BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2882
(1428 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|340786331|ref|YP_004751796.1| exodeoxyribonuclease I [Collimonas fungivorans Ter331]
gi|340551598|gb|AEK60973.1| Exodeoxyribonuclease I [Collimonas fungivorans Ter331]
Length = 477
Score = 513 bits (1322), Expect = e-142, Method: Compositional matrix adjust.
Identities = 228/471 (48%), Positives = 322/471 (68%), Gaps = 7/471 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFLW+DYETFG+ RRDRP QFAAIRTD LN I PIMLYC+PA DFLPDP++CLIT I
Sbjct: 5 TFLWHDYETFGVQPRRDRPAQFAAIRTDAELNEIGEPIMLYCQPANDFLPDPQSCLITGI 64
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ CL GIPEY+FA+ IEK F + GTI VGYNTI FDDE+TRF+FWRNLI+PY REW+
Sbjct: 65 TPQQCLERGIPEYQFAAQIEKAFSEAGTIGVGYNTIRFDDEVTRFLFWRNLIDPYAREWQ 124
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N C RWD+++V++ Y L P GI WP + G+PSF+LE L+ N LSH+ AHDALSDVRA
Sbjct: 125 NQCGRWDILDVVRTAYALRPEGIQWPVNDEGRPSFRLELLTKANGLSHEAAHDALSDVRA 184
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LARLIR + P+LF+F L+L KK AEIG P RPF +I+ MF ++ +++MWP+
Sbjct: 185 TIALARLIRQHQPKLFDFCLALHKKDRAGAEIGLPTPRPFLHISGMFPAEQGCLAVMWPL 244
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLNRSPI 608
+HP NKN ++ W+L DP + D + +R L K E + P+ +HLN+SP+
Sbjct: 245 GVHPTNKNEILAWDLAFDPSELFSLDADTVRTRLFSKSADLPEGVTRLPLKSVHLNKSPM 304
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
VI+ L+ LS+++ R+ D+ A ++ + A+ + + +W+++F + SD +DE
Sbjct: 305 VINKLQTLSADMTTRWGIDIPLALRHAEIAAQAPDLSGLWRQVFQRPEEAASD----VDE 360
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
+LY F+ D KL LR+M P+KL+ F++++LEEL F YRARNF +TL+ +E +
Sbjct: 361 DLYGGFVGNNDRRKLNDLRAMPPQKLAAARVSFDDQRLEELAFRYRARNFPDTLTPEEQE 420
Query: 729 RWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGKI 779
RW ++R +R ++ + ++M + EI+ L + A+E +IL AL Y ++
Sbjct: 421 RWDEHRAARLFDGEGKARTVDMLFEEIDQLSETADERGEEILGALYDYAEM 471
>gi|134093838|ref|YP_001098913.1| exonuclease I [Herminiimonas arsenicoxydans]
gi|133737741|emb|CAL60786.1| Exodeoxyribonuclease I (Exonuclease I) (DNA
deoxyribophosphodiesterase) (dRPase) [Herminiimonas
arsenicoxydans]
Length = 477
Score = 511 bits (1315), Expect = e-141, Method: Compositional matrix adjust.
Identities = 230/470 (48%), Positives = 313/470 (66%), Gaps = 7/470 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFLW+DYETFG+N RRDRP QFAAIRTD LN I PIMLYC+PA DFLPDP++CLIT I
Sbjct: 5 TFLWHDYETFGINTRRDRPAQFAAIRTDAELNEIGAPIMLYCQPANDFLPDPQSCLITGI 64
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ CL GIPEY+FA+ IE + GTI VGYNTI FDDE+TRFMFWRNLI+PY REW+
Sbjct: 65 TPQVCLERGIPEYQFAAKIESELAQTGTIGVGYNTIRFDDEVTRFMFWRNLIDPYAREWQ 124
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N C RWD+++V++ Y L P GI WP +G+ SF+LE L+ N ++H+ AHDALSDVRA
Sbjct: 125 NACGRWDILDVVRTAYALRPEGINWPQHPDGRSSFRLEQLTAANGIAHEAAHDALSDVRA 184
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LARLIR+ PRLF+F +L KK V EIG P+ RPF +IT MF ++ I ++WP+
Sbjct: 185 TIALARLIRDRQPRLFDFCFALHKKDRVATEIGLPLRRPFLHITGMFPAERGCIGIVWPL 244
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLNRSPI 608
+HP NKN +I W+L DP + D IR + K ++ E + PI IHLN+SP+
Sbjct: 245 AVHPTNKNEVIVWDLAADPSELATLDAETIRTRMFSKADALPEGVSRLPIKSIHLNKSPV 304
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
VI+NLK LS+ + ++ D+ A ++ + A++ + T IW+ +F + D +DE
Sbjct: 305 VINNLKTLSAEMTAQWGLDVATALRHAEIAATTPDMTAIWQDVFHRPQEGTPD----VDE 360
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
+LY F+ D L LR++SP+ L+ F + +LEEL + YRARNF +TLS +E +
Sbjct: 361 DLYGGFVGNNDRRLLQELRALSPEALAKATPGFSDARLEELFWRYRARNFPQTLSAEEAE 420
Query: 729 RWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGK 778
RW+++R +R +N I + EI+ L + A+E +IL AL Y +
Sbjct: 421 RWEEHRAARLFNGDGGARTIEGMFAEIDQLSETADERGEEILAALYDYAE 470
>gi|91788799|ref|YP_549751.1| exonuclease I [Polaromonas sp. JS666]
gi|91698024|gb|ABE44853.1| Exodeoxyribonuclease I subunit C [Polaromonas sp. JS666]
Length = 480
Score = 508 bits (1308), Expect = e-140, Method: Compositional matrix adjust.
Identities = 223/474 (47%), Positives = 316/474 (66%), Gaps = 11/474 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFLW+DYETFGLN RRDRP QFA IRTD LN + P+MLYC+PA D+LPDP +CLIT I
Sbjct: 5 TFLWHDYETFGLNTRRDRPSQFAGIRTDAELNEVGEPLMLYCQPANDYLPDPASCLITGI 64
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ CL GIPE+ FA+ IE++ +PGTI VGYNTI FDDE+TR++FWRNLI+PY REW+
Sbjct: 65 TPQLCLERGIPEHAFAAKIEQLLAEPGTIGVGYNTIRFDDEVTRYLFWRNLIDPYAREWQ 124
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N+C RWDL++V++ Y L P GI WP K +GKPSFKLE L+ N L H+ AHDALSDVRA
Sbjct: 125 NDCGRWDLLDVVRMAYALRPEGIVWPTKEDGKPSFKLEDLARANGLLHEAAHDALSDVRA 184
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIAR----PFFYITHMFSSKHSYISL 547
T+ LARLIR P+LF+F L L KK V AE+G P +R PF +++ MF + +++
Sbjct: 185 TIALARLIRKAQPKLFDFCLGLHKKDRVAAELGLPASRQSATPFLHVSGMFPPERGCLAV 244
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLN 604
MWP+ HP NKN L+ W+L HDP + L D+ +R L + E + P+ +HLN
Sbjct: 245 MWPLATHPTNKNELLAWDLAHDPSELPLLDVATLRQRLFTRSADLPEGVLRLPLKSVHLN 304
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL 664
+SP+V+ L+ L+ + ++ D++ A +N + A+ + + + IW ++F K D
Sbjct: 305 KSPMVVRKLQTLTPEMAVKWGVDMDAALRNAEKAAGLPDMSAIWPEVFQRPKEAAPD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
+DE+LY F+ D +L LR++SP +L++ F++ +L+EL+F YRARNF ETL+
Sbjct: 362 -VDEDLYGGFVGNADRRRLNQLRALSPAELAHSRTGFDDDRLQELLFRYRARNFAETLTP 420
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGK 778
+E +RW+ +R +R + N++ + EI++L + +E IL AL Y +
Sbjct: 421 EEAERWEAHRAARLLEGEGGARNVDALFAEIDTLSETTDERGQAILGALYDYAE 474
>gi|152980617|ref|YP_001352252.1| exonuclease I [Janthinobacterium sp. Marseille]
gi|151280694|gb|ABR89104.1| exodeoxyribonuclease I [Janthinobacterium sp. Marseille]
Length = 476
Score = 507 bits (1306), Expect = e-140, Method: Compositional matrix adjust.
Identities = 228/470 (48%), Positives = 317/470 (67%), Gaps = 7/470 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFLW+DYETFG+ RRDRP QFAAIRTD LN I PIMLYCKPA DFLPDP++CLIT I
Sbjct: 5 TFLWHDYETFGIQPRRDRPAQFAAIRTDAELNEIGEPIMLYCKPANDFLPDPQSCLITGI 64
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ CL G+PE++FA+ IEK + GTI VGYNTI FDDE+TRFMFWRNLI+PY REW+
Sbjct: 65 TPQTCLERGVPEHEFAAEIEKALSQTGTIGVGYNTIRFDDEVTRFMFWRNLIDPYAREWQ 124
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N+C RWD+++V++ Y L P GI WP +G+PSF+LE L+ N ++H+ AHDALSDVRA
Sbjct: 125 NSCGRWDILDVVRTAYALRPEGINWPKHPDGRPSFRLEQLTAENGIAHEAAHDALSDVRA 184
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LARLIR P+LF+F L L KK V AEIG P+ RPF +IT M ++ I+++WP+
Sbjct: 185 TIALARLIRERQPKLFDFCLGLHKKDKVAAEIGLPLRRPFLHITGMIPAERGCIAVVWPL 244
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLNRSPI 608
+HP NKN +I W+L DP + D IR + K ++ E + PI IHLN+SPI
Sbjct: 245 AVHPTNKNEVIVWDLSVDPSELATLDAETIRMRMFSKADALPEGVSRLPIKTIHLNKSPI 304
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
VI+NLK LS+ + ++ D+ A ++ + A++ + T IW+ +F + +D +DE
Sbjct: 305 VINNLKTLSAEMTEQWGIDIPTALRHAEVAAAAPDMTAIWQDVFYRPQEAAAD----VDE 360
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
+LY F+ D L LR++SP+ L+ F + +LEE+++ YRARNF TL+ +E +
Sbjct: 361 DLYGGFVGNNDRRTLQELRALSPEALAQAKPGFSDPRLEEIVWRYRARNFPHTLNEEEQQ 420
Query: 729 RWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGK 778
RW+ +R++R ++ + I + EI+ L + A+E +IL AL Y +
Sbjct: 421 RWEDHRVARLFDGEGGARTIETLFAEIDQLSETADERGEEILGALYDYAE 470
>gi|409407386|ref|ZP_11255837.1| exodeoxyribonuclease I [Herbaspirillum sp. GW103]
gi|386433137|gb|EIJ45963.1| exodeoxyribonuclease I [Herbaspirillum sp. GW103]
Length = 478
Score = 506 bits (1303), Expect = e-140, Method: Compositional matrix adjust.
Identities = 222/474 (46%), Positives = 322/474 (67%), Gaps = 8/474 (1%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
N TFLW+DYETFG RRDRP QFAA+RTD LN I PIM+YCKPAPD+LPDP +CLIT
Sbjct: 3 NHTFLWHDYETFGAVPRRDRPAQFAAVRTDAELNEIGEPIMIYCKPAPDYLPDPVSCLIT 62
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ CL +G+ E++FA+ IE+ +PGTI VGYNTI FDDE+TRFMFWRNLI+PY RE
Sbjct: 63 GITPQHCLEHGMAEHEFAARIEQALGEPGTIGVGYNTIRFDDEVTRFMFWRNLIDPYARE 122
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W N C RWDL++V++ Y L P GI WP K +G SFKLEHLS N L+H+ AHDALSDV
Sbjct: 123 WANGCGRWDLLDVVRLTYALRPEGIQWPTKEDGSVSFKLEHLSKANGLAHEAAHDALSDV 182
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR +NPRLF+F L+L KK AEIG P ARPF +++ MF + ++LMW
Sbjct: 183 RATIALARLIRQHNPRLFDFALALHKKDKAAAEIGLPAARPFLHVSGMFPVANGCLALMW 242
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ +HP NKN +I W+L HDP + D +R+ + +++ E +P+ IHLN+S
Sbjct: 243 PLGMHPTNKNEVIAWDLGHDPGELAGMDAATVRERMFTRRDELPEGMTRLPVKSIHLNKS 302
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNI 666
P+V+ +LK LS+ + D++ A ++ + A+++ + + +W++++ + +++
Sbjct: 303 PMVVGSLKTLSAERAGQLNIDVDAALRHAEKAAALPDLSPLWREVYQ----REQEGPVDV 358
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
DE+LY FI D +L LR++ + L+ + F++++L E++F YRARNF ETLS +E
Sbjct: 359 DEDLYGGFIGNADRRQLTQLRALPGQALAGASVAFDDRRLNEILFRYRARNFPETLSPEE 418
Query: 727 LKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK-ILNALLMYGKI 779
+ W+++R +R + + + +I+ L ++A++ T+ IL AL Y ++
Sbjct: 419 AQHWEEHRAARLFEGAGGARTVAQLFEQIDQLQEEADDERTQDILAALYDYAEM 472
>gi|399017419|ref|ZP_10719611.1| exonuclease I [Herbaspirillum sp. CF444]
gi|398103293|gb|EJL93464.1| exonuclease I [Herbaspirillum sp. CF444]
Length = 481
Score = 504 bits (1299), Expect = e-139, Method: Compositional matrix adjust.
Identities = 231/477 (48%), Positives = 320/477 (67%), Gaps = 11/477 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
N TFLW+DYETFG RRDRP QFAAIRTD LN I +PIM+YCKPAPDF+PDP++CLIT
Sbjct: 3 NHTFLWHDYETFGAQARRDRPAQFAAIRTDAELNEIGDPIMIYCKPAPDFVPDPQSCLIT 62
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ CL GIPEY+FA+ IE+ +PGTI VGYNTI FDDEITRFMFWRNLI+PY RE
Sbjct: 63 HITPQDCLERGIPEYQFAAQIEQAMSEPGTIGVGYNTIRFDDEITRFMFWRNLIDPYARE 122
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNG-KPSFKLEHLSFVNNLSHKKAHDALSD 488
W+NNC RWDL++V++ Y L P GI WP K +G PSFKLEHL+ N ++H+ AHDALSD
Sbjct: 123 WQNNCGRWDLLDVVRTTYALRPEGIAWPKKEDGVTPSFKLEHLTKQNGIAHEAAHDALSD 182
Query: 489 VRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLM 548
VRAT+ ARLI+ PRLF+F L+L KK V AEIG P +PF +++ MF + +++M
Sbjct: 183 VRATIAFARLIKEKQPRLFDFCLALHKKDRVAAEIGLPTPKPFLHVSGMFPAAQGCLAVM 242
Query: 549 WPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLNR 605
WP+ HP NKN +I W+L DP + D++ IR + K + E + P+ IHLN+
Sbjct: 243 WPLGTHPTNKNEIIAWDLSRDPGELTGLDVDTIRTRMFSKTDDLPEGVSRLPVKTIHLNK 302
Query: 606 SPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELN 665
SP+VIS+LK L++ + D++ A +N A+++ +W K+F K D
Sbjct: 303 SPMVISSLKTLTAARAAEFGLDIDAALQNAAAAAALPEMGAVWAKVFQRPKEAAPD---- 358
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNV---NFCFENKKLEELIFLYRARNFIETL 722
+DE+LY F+ D +L LR++SP++L+ F++ +LEEL+F YRARNF +TL
Sbjct: 359 VDEDLYGGFVGNNDRRQLTQLRALSPQQLAQAAQTRITFDDVRLEELLFRYRARNFPDTL 418
Query: 723 SYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGKI 779
S +E +RW+ +R +R ++ + ++ + +I+ L + +E +IL AL Y ++
Sbjct: 419 SAEETQRWEAHRAARLFDGEGGARTLDALFEQIDQLSESVDERGEEILGALYDYAEM 475
>gi|239815634|ref|YP_002944544.1| exonuclease I [Variovorax paradoxus S110]
gi|239802211|gb|ACS19278.1| Exodeoxyribonuclease I [Variovorax paradoxus S110]
Length = 479
Score = 503 bits (1296), Expect = e-139, Method: Compositional matrix adjust.
Identities = 229/476 (48%), Positives = 311/476 (65%), Gaps = 11/476 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
N TFLW+DYETFG RRDRP QFAAIRTD LN I P+M+YCKPAPD+LP P ACLIT
Sbjct: 2 NHTFLWHDYETFGAVPRRDRPSQFAAIRTDAELNEIGEPLMIYCKPAPDYLPSPEACLIT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ CL GIPE+ FA+ IEK F +PGTI VGYNTI FDDE+TRF+FWRNLI+PY RE
Sbjct: 62 GITPQLCLERGIPEHAFAAQIEKAFSQPGTIGVGYNTIRFDDEVTRFLFWRNLIDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+N+C RWDL++V++ Y L P GI WP K +GKPSFKLE L+ N L H+ AHDALSDV
Sbjct: 122 WQNDCGRWDLLDVVRLTYALRPDGIEWPKKEDGKPSFKLEDLARANGLLHESAHDALSDV 181
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWP----IARPFFYITHMFSSKHSYI 545
RAT+ LARLIR P+LF F L KK V +E+G P ARPF +++ MF + +
Sbjct: 182 RATIALARLIRERQPKLFEFAFGLHKKDRVASELGLPAMRETARPFLHVSGMFPVERGCL 241
Query: 546 SLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIH 602
+MWP+ HP NKN LI W+L HDP + D+ +R L + E + P+ IH
Sbjct: 242 GVMWPLASHPTNKNELIAWDLAHDPSELRDLDVETLRLRLFTRTADLPEGVVRLPVKGIH 301
Query: 603 LNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL 662
LN+SP+V+ NL+ L+ + R+ DL+ A ++ A + + + IW +++ K D
Sbjct: 302 LNKSPMVVGNLRTLAPAMAERWNVDLDAALRHAAIARDLPDMSAIWSQVYARPKEAVPD- 360
Query: 663 ELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
+DE+LY F+ D +L LR++SP++L+ F++ +LEE++F YRARN+ E L
Sbjct: 361 ---VDEDLYGGFVGNGDRRRLNQLRALSPEELAKDRTGFDDGRLEEILFRYRARNWPELL 417
Query: 723 SYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGK 778
S +E +RW+ R +R + + I M + E+++L + A+E +IL AL Y +
Sbjct: 418 SSEEAERWEALRAARLFKGEGGARTIEMLFSEVDALSETADERGEEILGALYEYAE 473
>gi|319793918|ref|YP_004155558.1| exodeoxyribonuclease i [Variovorax paradoxus EPS]
gi|315596381|gb|ADU37447.1| Exodeoxyribonuclease I [Variovorax paradoxus EPS]
Length = 479
Score = 501 bits (1290), Expect = e-138, Method: Compositional matrix adjust.
Identities = 225/476 (47%), Positives = 314/476 (65%), Gaps = 11/476 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
N TFLW+DYETFG RRDRP QFAAIRTD LN I P+M+YCKPAPD+LP P ACLIT
Sbjct: 2 NHTFLWHDYETFGAVPRRDRPSQFAAIRTDAELNEIGEPLMIYCKPAPDYLPSPEACLIT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ CL GIPE+ FA+ IE+ F +PGTI VGYNTI FDDE+TRF+FWRNLI+PY RE
Sbjct: 62 GITPQVCLERGIPEHDFAAQIERAFSQPGTIGVGYNTIRFDDEVTRFLFWRNLIDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+N+C RWDL++V++ Y L P GI WP K +GKPSFKLE L+ N L H+ AHDALSDV
Sbjct: 122 WQNDCGRWDLLDVVRLTYALRPEGIQWPKKEDGKPSFKLEDLARANGLLHESAHDALSDV 181
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWP----IARPFFYITHMFSSKHSYI 545
RAT+ LARLIR+ P+LF+F L KK V +E+G P A+PF +++ MFS + I
Sbjct: 182 RATIALARLIRDKQPKLFDFAFGLHKKDRVASELGLPAMRETAKPFLHVSGMFSVERGCI 241
Query: 546 SLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIH 602
++MWP+ HP NKN L+ W+L HDP + D+ +R L + E + P+ IH
Sbjct: 242 AVMWPLASHPTNKNELLAWDLAHDPSELRDLDVETLRLRLFTRTADLPEGVLRLPVKGIH 301
Query: 603 LNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL 662
LN+SP+V+ NL+ L+ + R+ DL+ A ++ A + + + IW +++ K D
Sbjct: 302 LNKSPMVVGNLRTLAPPMAERWGIDLDTAMRHAAIARDLPDMSAIWSQVYARPKEATPD- 360
Query: 663 ELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
+DE+LY F+ D +L LR +S +L+ F++ +LEE++F YRARN+ E+L
Sbjct: 361 ---VDEDLYGGFVGNADRRRLNQLRGLSAGELAKDRTGFDDGRLEEIVFRYRARNWPESL 417
Query: 723 SYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGK 778
+ +E +RW+ R++R ++ + I + E+++L + A+E +IL AL Y +
Sbjct: 418 APEETERWEALRVARLFHGEGGARTIEQLFSEVDALSETADERGEEILGALYEYAE 473
>gi|398832180|ref|ZP_10590344.1| exonuclease I [Herbaspirillum sp. YR522]
gi|398223717|gb|EJN10052.1| exonuclease I [Herbaspirillum sp. YR522]
Length = 478
Score = 500 bits (1288), Expect = e-138, Method: Compositional matrix adjust.
Identities = 219/474 (46%), Positives = 316/474 (66%), Gaps = 8/474 (1%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
N TFLW+DYETFG+ RRDRP QFAA+RTD LN I PIM+YCKPAPD+LPDP++CLIT
Sbjct: 3 NQTFLWHDYETFGIVPRRDRPAQFAAVRTDAELNEIGEPIMIYCKPAPDYLPDPQSCLIT 62
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ CL G+PE++FA IE+ +PGTI VGYNTI FDDE+TRF+FWRNLI+PY RE
Sbjct: 63 HITPQQCLQQGLPEHQFAQRIEQAMAEPGTIGVGYNTIRFDDEVTRFLFWRNLIDPYARE 122
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+N C RWDL++V++ Y L P GI WP K +G SFKLEHL+ N L H+ AHDALSDV
Sbjct: 123 WQNGCGRWDLLDVVRLCYALRPEGINWPTKEDGSVSFKLEHLTQANGLVHEAAHDALSDV 182
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARL+R +NPRLF+F L+L KK V EIG P RPF +++ MF + ++LMW
Sbjct: 183 RATIALARLLRQHNPRLFDFALALHKKDRVATEIGLPTPRPFLHVSGMFPAARGCLALMW 242
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ IHP NKN L+ W+L DP + D + R+ L + ++ E + + IHLN+S
Sbjct: 243 PLGIHPTNKNELLAWDLSVDPGELAGLDASTARERLFTRSDAMPEGMTRLALKSIHLNKS 302
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNI 666
P+V+ NLK LS+ + D++ A ++ + A+++ + ++W++++ + +D +
Sbjct: 303 PMVVGNLKTLSATRAAQLGIDVDLALRHAEVAAALPDLGHLWQQVYQREQQAAAD----V 358
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
DE+LY F+ D +L LR+M+P+ L+ + F + +L +++F YRARNF +TLS +E
Sbjct: 359 DEDLYGGFVGNDDRRQLTQLRAMTPQALAAASVSFADARLTQILFRYRARNFPDTLSAQE 418
Query: 727 LKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKA-NEHDTKILNALLMYGKI 779
W+ +R +R ++ I + +I+ L + +E ++L AL Y ++
Sbjct: 419 SADWEAHRAARLFDGAGGARTIAQLFEQIDQLQETTDDEQAQEVLGALYDYAEM 472
>gi|89900857|ref|YP_523328.1| exonuclease I [Rhodoferax ferrireducens T118]
gi|89345594|gb|ABD69797.1| Exodeoxyribonuclease I subunit C [Rhodoferax ferrireducens T118]
Length = 485
Score = 500 bits (1288), Expect = e-138, Method: Compositional matrix adjust.
Identities = 230/477 (48%), Positives = 309/477 (64%), Gaps = 11/477 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+ TFLW+DYETFG N RRDRP QFAAIRTD LN I P+MLYC+PA DFLPDP+ACLIT
Sbjct: 7 HHTFLWHDYETFGTNTRRDRPAQFAAIRTDAELNVIGAPLMLYCQPAGDFLPDPQACLIT 66
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ CL GIPEY+FA+ IE+ F PGT+ VGYNTI FDDEITRFMFWRNLI+PY RE
Sbjct: 67 GITPQLCLEKGIPEYQFAAQIEQAFSLPGTVGVGYNTIRFDDEITRFMFWRNLIDPYARE 126
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+N+C RWDL++V++ Y L P G+ WP GKPSFKL LS N L H+ AHDALSDV
Sbjct: 127 WQNDCGRWDLLDVVRTAYALRPDGMEWPLNAEGKPSFKLTDLSAANGLLHEAAHDALSDV 186
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPI----ARPFFYITHMFSSKHSYI 545
RAT+ LARLI+ P+LF+F L KK V+AE+G P ARPF +I+ MF+ + +
Sbjct: 187 RATIALARLIKTAQPKLFDFCFGLHKKDRVMAELGLPTTLTQARPFLHISGMFAPERGCL 246
Query: 546 SLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIH 602
+LMWP+ +HP NKN L+ W+L DP++ + +IR L K E + P+ IH
Sbjct: 247 ALMWPLAMHPANKNELLAWDLAFDPRELAQMNAEQIRLRLFTKTADLPEGVQRLPVKSIH 306
Query: 603 LNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL 662
LN+SP VI N K LSS + R+ +L+ N A ++ + + IW +F D
Sbjct: 307 LNKSPTVIGNYKTLSSAMAQRWGLNLDAQLANAAHAQALPDMSGIWPAVFKRPAAATPD- 365
Query: 663 ELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
+DE+LY F+ D +L LR + ++L++ F++ +L EL++ YRARNF ++L
Sbjct: 366 ---VDEDLYGGFVGNADRRRLNDLRQLKAQELASARPAFDDARLTELLWRYRARNFPQSL 422
Query: 723 SYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGKI 779
S EL RW+ +R +R ++ + I + E++SL + A+E IL AL Y ++
Sbjct: 423 SADELARWEAHRSARLFDGEGGALTIEQLFEELDSLAESADERGEAILGALYDYAEL 479
>gi|445495325|ref|ZP_21462369.1| exodeoxyribonuclease I [Janthinobacterium sp. HH01]
gi|444791486|gb|ELX13033.1| exodeoxyribonuclease I [Janthinobacterium sp. HH01]
Length = 480
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 235/474 (49%), Positives = 315/474 (66%), Gaps = 11/474 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
TFLW+DYETFG RRDRP QFAAIRTD LN I PIMLYCKPA DFLPDP++CLIT
Sbjct: 3 TQTFLWHDYETFGAQARRDRPAQFAAIRTDAELNEIGTPIMLYCKPANDFLPDPQSCLIT 62
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ CL G+PE++FA+ IE+ F KPGTI VGYNTI FDDEITRFMFWRNLI+PY RE
Sbjct: 63 GITPQQCLEWGVPEHQFANTIEQAFSKPGTIGVGYNTIRFDDEITRFMFWRNLIDPYARE 122
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+N C RWDL++V++ Y L P GI WP + +GKPSFKLEHL+ N L H+ AHDALSDV
Sbjct: 123 WQNQCGRWDLLDVVRMTYALRPEGIEWPMREDGKPSFKLEHLAKANGLLHEAAHDALSDV 182
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIA----RPFFYITHMFSSKHSYI 545
RAT+ LARLIR P+LF+F L+L KK V EIG +A PF +++ MF ++ I
Sbjct: 183 RATIALARLIRAKQPKLFDFCLALHKKDRVADEIGMHLAPALRAPFLHVSGMFPAERGCI 242
Query: 546 SLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIH 602
+L+WP+ HP NKN +I W+ +DP + D + IR + + ++ E + P+ IH
Sbjct: 243 ALVWPLATHPTNKNEVIVWDCTYDPTELFTLDADTIRTRIFSRADALPEGVTRLPVKSIH 302
Query: 603 LNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL 662
LN+SP+++SNLK LS + ++ DL + A++ N W+++F +
Sbjct: 303 LNKSPMLVSNLKTLSPAMAAKWGIDLEQGKAHAALAAAGRNMDIEWEQVFH----RPAGA 358
Query: 663 ELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
EL++DE+LYN F+ K+D L LR +P KL+ + F + +L EL+F YRARNF ETL
Sbjct: 359 ELDVDEDLYNGFVGKEDRRMLDTLRKETPAKLATASPSFSDPRLLELLFRYRARNFPETL 418
Query: 723 SYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMY 776
S E++ W+++R +RFY +I+ F+ EI+ L + A+E +IL L Y
Sbjct: 419 SEGEMEHWEQHRAARFYEGAGGARSIDQFFGEIDHLQQDADERAEQILAELYEY 472
>gi|121604837|ref|YP_982166.1| exonuclease I [Polaromonas naphthalenivorans CJ2]
gi|120593806|gb|ABM37245.1| Exodeoxyribonuclease I subunit C [Polaromonas naphthalenivorans
CJ2]
Length = 482
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 220/476 (46%), Positives = 317/476 (66%), Gaps = 11/476 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+ TFLW+DYETFGLN RRDRP QFA IRTD LN I P+M+YC+PA D+LPDP +C++T
Sbjct: 3 SHTFLWHDYETFGLNTRRDRPAQFAGIRTDAELNEIGEPLMIYCQPANDYLPDPESCVLT 62
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ CL +G+PE+ FA+ IE++ +PGTI VGYNTI FDDE+TR +FWRNLI+PY RE
Sbjct: 63 GITPQHCLQHGVPEHAFAARIEQVLAQPGTIGVGYNTIRFDDEVTRHLFWRNLIDPYGRE 122
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+N C RWDL++V++ Y L P GI WP K +GKPSFKLE L+ N L H+ AHDALSDV
Sbjct: 123 WQNECGRWDLLDVVRMAYALRPDGIVWPLKEDGKPSFKLEDLARANGLLHETAHDALSDV 182
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWP----IARPFFYITHMFSSKHSYI 545
RAT+ LARL+R PRLF+F L L KK V AE+G P +ARPF +++ MF ++ +
Sbjct: 183 RATIALARLVRTAQPRLFDFCLGLHKKARVSAELGLPATARMARPFLHVSGMFPAERGCL 242
Query: 546 SLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIH 602
++M+P+ HP NKN ++ W+L HDP + L D+ +R L K E + PI +H
Sbjct: 243 AVMFPLATHPANKNEVLAWDLAHDPSELPLLDVATLRLRLFSKSADLPEGVQRLPIKSVH 302
Query: 603 LNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL 662
LN+SP+V+ NL+ L+ + R+ D A ++ + A+ + + + +W ++F ++
Sbjct: 303 LNKSPMVVRNLQTLTPAMAARWGVDTEQALRHAEIAAGLPDMSAVWPEVFR----RAAEA 358
Query: 663 ELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
E ++DE LY FI D +L LR MS +L++ F++ +L+EL+F YRARNF ETL
Sbjct: 359 EPDVDENLYGGFIGNDDRRRLNQLREMSGAELAHSRMGFDDGRLKELVFRYRARNFPETL 418
Query: 723 SYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGK 778
+ ++ +RW+ +R +R + + N++ + I++L + A+E IL AL Y +
Sbjct: 419 NPEDTERWEAHRAARLLDGEGGARNVDALFAGIDALAQTADERGEAILGALYDYAE 474
>gi|241763393|ref|ZP_04761448.1| Exodeoxyribonuclease I [Acidovorax delafieldii 2AN]
gi|241367435|gb|EER61746.1| Exodeoxyribonuclease I [Acidovorax delafieldii 2AN]
Length = 481
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 226/475 (47%), Positives = 317/475 (66%), Gaps = 12/475 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFLW+DYETFG N RRDRP QFAAIRTD L + P+MLYC+PA D+LPDP++CLIT I
Sbjct: 5 TFLWHDYETFGANTRRDRPAQFAAIRTDAELREVGEPLMLYCQPANDYLPDPQSCLITGI 64
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ CL G+PE++FA+ IE F +PGTI VGYNTI FDDEITRFMFWRNLI+PY REW+
Sbjct: 65 TPQLCLEKGVPEHEFANRIEAEFAQPGTIGVGYNTIRFDDEITRFMFWRNLIDPYAREWQ 124
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N C RWDL++V++ Y L P GI WP K +G PSFKLEHLS N L+H+ AHDALSDVRA
Sbjct: 125 NQCGRWDLLDVVRMTYALRPDGIHWPRKEDGSPSFKLEHLSKANGLAHEAAHDALSDVRA 184
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWP----IARPFFYITHMFSSKHSYISL 547
T+ LARLIR +NPRLF+F LSL KK V AE+ P ARPF +++ MF ++ +++
Sbjct: 185 TIALARLIRQHNPRLFDFALSLHKKDRVAAELRLPATALTARPFLHVSGMFPAERGCLAV 244
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
MWP+ HP NKN +I W+L HDP++ ++IR + + E +P+ IHLN
Sbjct: 245 MWPLASHPTNKNEVIAWDLAHDPRELATLGTDEIRLRMFSRAADLPEGMTRLPVKTIHLN 304
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL 664
+SP+V+ N+ L+ L R+ DL A ++ + A S+ + + IW +F ++
Sbjct: 305 KSPMVVGNVNTLTPALAQRWGIDLVQAAQHAEVARSLPDMSGIWPAVF----ARPAEPAA 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
++D++LY F+ D +L LR+M +KL+ F++ +LEEL++ YRARNF TLS
Sbjct: 361 DVDQDLYGGFVGNSDRRRLNDLRAMDGQKLAAARTGFDDPRLEELVWRYRARNFPTTLSP 420
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK-ILNALLMYGK 778
+E +RW+ +R + ++ + ++ + EI+ + + A++ T+ IL AL Y +
Sbjct: 421 EEGERWEAHRAACLFDGQGGARTVDRLFTEIDQISETADDERTQEILGALYDYAE 475
>gi|398812595|ref|ZP_10571313.1| exonuclease I [Variovorax sp. CF313]
gi|398076890|gb|EJL67934.1| exonuclease I [Variovorax sp. CF313]
Length = 479
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 221/476 (46%), Positives = 316/476 (66%), Gaps = 11/476 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
N TFLW+DYETFG RRDRP QFAAIRTD LN + P+M+YCKPAPD+LP P ACLIT
Sbjct: 2 NHTFLWHDYETFGAVPRRDRPSQFAAIRTDAELNEVGEPLMIYCKPAPDYLPSPEACLIT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ CL GIPE++FA+ IE+ F +PGTI VGYNTI FDDE+TRF+FWRNLI+PY RE
Sbjct: 62 GITPQVCLKRGIPEHEFAAHIERAFSQPGTIGVGYNTIRFDDEVTRFLFWRNLIDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+N+C RWDL++V++ Y L P GI WP K +GKPSFKLE L+ N L H+ AHDALSDV
Sbjct: 122 WQNDCGRWDLLDVVRLTYALRPDGIEWPKKEDGKPSFKLEDLARANGLLHESAHDALSDV 181
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWP----IARPFFYITHMFSSKHSYI 545
RAT+ LARLIR+ P+LF+F L +K V +E+G P A+PF +++ MF + +
Sbjct: 182 RATIALARLIRDRQPKLFDFAFGLHRKDRVASELGLPAMRETAKPFLHVSGMFPVERGCL 241
Query: 546 SLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIH 602
++MWP+ HP NKN L+ W+L HDP + D+ +R L + E + P+ IH
Sbjct: 242 AVMWPLASHPTNKNELLAWDLAHDPSELRDIDVETLRLRLFTRTADLPEGVVRLPLKGIH 301
Query: 603 LNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL 662
LN+SP+V+ NL+ L+ + R+ DL+ A ++ A + + + IW +++ K D
Sbjct: 302 LNKSPMVVGNLRTLAPAMAGRWGVDLDTAMRHAAIARDLPDMSAIWSQVYARPK----DA 357
Query: 663 ELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
++DE+LY F+ D +L LR++SP++L+ F++ +L+E++F YRARN+ E L
Sbjct: 358 TPDVDEDLYGGFVGNADRRRLNQLRNLSPEELAKDRTGFDDGRLDEILFRYRARNWPELL 417
Query: 723 SYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGK 778
+ E +RW+ R+++ + + I M + E+++L + A+E +IL AL Y +
Sbjct: 418 NEDENERWEALRVAKLFKGEGGARTIEMLFSEVDALSENADERGEEILGALYEYAE 473
>gi|427403078|ref|ZP_18894075.1| hypothetical protein HMPREF9710_03671 [Massilia timonae CCUG 45783]
gi|425718089|gb|EKU81041.1| hypothetical protein HMPREF9710_03671 [Massilia timonae CCUG 45783]
Length = 495
Score = 491 bits (1263), Expect = e-135, Method: Compositional matrix adjust.
Identities = 224/479 (46%), Positives = 310/479 (64%), Gaps = 11/479 (2%)
Query: 307 HNGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRAC 366
H TFLW+DYETFG RRDRP QFAAIRTD LN I P+MLYC+PA DFLPDP++C
Sbjct: 14 HMSTHTFLWHDYETFGAVPRRDRPAQFAAIRTDADLNEIGEPVMLYCQPANDFLPDPQSC 73
Query: 367 LITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPY 426
LIT ITPQ CL G+PE++FA IE F +PGTI VGYNTI FDDE+TRF+FWRNLI+PY
Sbjct: 74 LITGITPQHCLERGVPEHEFARRIEAAFSEPGTIGVGYNTIRFDDEVTRFLFWRNLIDPY 133
Query: 427 EREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDAL 486
REW++NC RWDL++V++ Y L P GI WP + +GKPSFKLEHLS N L+H+ AHDAL
Sbjct: 134 AREWQHNCGRWDLLDVVRMVYALRPEGIEWPTREDGKPSFKLEHLSAANGLAHEAAHDAL 193
Query: 487 SDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGW---PIAR-PFFYITHMFSSKH 542
SDVRAT+ LARLIR+ PRLF+F L LR+K V EIG P R PF +++ MF ++
Sbjct: 194 SDVRATIALARLIRDRQPRLFDFCLELRRKDRVATEIGLHLDPGQRQPFLHVSGMFPVEY 253
Query: 543 SYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PIS 599
+ L++P+ HP NKN ++ W+ HDP + D + IR + + E + PI
Sbjct: 254 GCLGLVYPLAQHPTNKNEVLVWDCRHDPSELFALDADTIRTRMFTRAGDLPEGVTRLPIK 313
Query: 600 MIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINN 659
+HLN+SP+++ NLK L ++L R+ DL + A+ + IW ++
Sbjct: 314 SVHLNKSPMLVGNLKTLRADLATRWDIDLERGRAHAALAAGGPDMRAIWAQVLAKPGAGE 373
Query: 660 SDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFI 719
+ +++DE+LY F+S+ D +L LR P+ L+ FE+++L EL+F YRARNF
Sbjct: 374 T---VDVDEDLYGGFVSRDDRRQLESLRMQKPEALAR-RVSFEDERLNELLFRYRARNFP 429
Query: 720 ETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGK 778
TLS E++ W+ +R +R + + ++ + EI++L + A+E +IL AL Y +
Sbjct: 430 HTLSEDEMQLWEAHRAARLFEGAHGARTVDQLFTEIDALSETADERAEEILGALYDYAE 488
>gi|365091945|ref|ZP_09329196.1| exonuclease I [Acidovorax sp. NO-1]
gi|363415682|gb|EHL22808.1| exonuclease I [Acidovorax sp. NO-1]
Length = 481
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 228/475 (48%), Positives = 315/475 (66%), Gaps = 12/475 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFLW+DYETFG N RRDRP QFAAIRTD LN I P+MLYC+PA D+LPDP +CLIT I
Sbjct: 5 TFLWHDYETFGANTRRDRPAQFAAIRTDAELNEIGEPLMLYCQPANDYLPDPVSCLITGI 64
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ CL G+PE++FA+ IE F +PGTI VGYNTI FDDEITRFMFWRNLI+PY REW+
Sbjct: 65 TPQQCLEQGVPEHQFAARIESEFAQPGTIGVGYNTIRFDDEITRFMFWRNLIDPYAREWQ 124
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N C RWDL++V++ Y L P GITWP K++G PSFKLEHLS N L H+ AHDALSDVRA
Sbjct: 125 NQCGRWDLLDVVRMTYALRPDGITWPKKDDGTPSFKLEHLSKANGLVHEAAHDALSDVRA 184
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWP----IARPFFYITHMFSSKHSYISL 547
T+ LARLIR +N +LF+F LSL KK V AE+ P AR F +++ MF ++ +++
Sbjct: 185 TIALARLIRQHNTKLFDFALSLHKKDRVAAELRLPATTVTARAFLHVSGMFPTERGCLAV 244
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLN 604
MWP+ HP NKN LI W+L HDP++ ++ IR + K ++ E + PI IHLN
Sbjct: 245 MWPLASHPTNKNELIAWDLAHDPRELATLNVEDIRLRMFSKADALPEGVTRLPIKTIHLN 304
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL 664
+SP+V+ N+ L+ L R+ DL A ++ + A ++ + + IW +F + D
Sbjct: 305 KSPMVVGNVNTLTPALAQRWGIDLAQAAQHAEVACALPDMSGIWPAVFARPQEPAPD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
+D++LY F+ D L LR++S +L+ F++ +L EL++ YRARNF +TLS
Sbjct: 362 -VDQDLYGGFVGNNDRRLLNDLRTLSGDQLAKARANFDDPRLAELLWRYRARNFPQTLSP 420
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK-ILNALLMYGK 778
+E +RW+ +R + ++ + + + EI+ L + A++ T+ IL AL Y +
Sbjct: 421 EEQERWEAHRAACLFDGQGGARTVEQLFTEIDELSETADDERTQDILGALYDYAE 475
>gi|351732145|ref|ZP_08949836.1| exonuclease I [Acidovorax radicis N35]
Length = 480
Score = 487 bits (1254), Expect = e-134, Method: Compositional matrix adjust.
Identities = 224/477 (46%), Positives = 309/477 (64%), Gaps = 11/477 (2%)
Query: 309 GNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLI 368
+ TFLW+DYETFG N RRDRP QFAAIRTD LN I P+M YC+PA D+LPDP +CLI
Sbjct: 2 ASHTFLWHDYETFGANTRRDRPAQFAAIRTDAELNEIGEPLMFYCQPANDYLPDPVSCLI 61
Query: 369 TKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYER 428
T ITPQ CL G+PEY+FA+ IE F +PGTI VGYNTI FDDEITRFMFWRNLI+PY R
Sbjct: 62 TGITPQLCLEKGVPEYQFAARIEAEFAQPGTIGVGYNTIRFDDEITRFMFWRNLIDPYAR 121
Query: 429 EWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSD 488
EW+N C RWDL++V++ Y L P GITWP K +G PSFKLEHLS N L H+ AHDALSD
Sbjct: 122 EWQNQCGRWDLLDVVRMTYALRPDGITWPKKEDGSPSFKLEHLSKANGLLHEAAHDALSD 181
Query: 489 VRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWP----IARPFFYITHMFSSKHSY 544
VRAT+ LARLIR +N +LF+F LSL KK V AE+ P RPF +++ MF ++
Sbjct: 182 VRATIALARLIRQHNTKLFDFALSLHKKDRVAAELRLPATAITTRPFLHVSGMFPAERGC 241
Query: 545 ISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMI 601
+++MWP+ HP NKN LI W+L HDP ++IR + K ++ E + P+ I
Sbjct: 242 LAVMWPLASHPTNKNELIAWDLAHDPAPLATMGPDEIRLRMFSKADALPEGVTRLPVKTI 301
Query: 602 HLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSD 661
HLN+SP+V+ N+ L+ L R+ D+ A ++ + A ++ + + IW +F + D
Sbjct: 302 HLNKSPMVVGNVNTLTPALAQRWGIDMAQAAQHAEVAHALPDMSGIWPAVFARPQEPAPD 361
Query: 662 LELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
+D++LY F+ D L LR++ KL+ F++ +L EL++ YRARNF +T
Sbjct: 362 ----VDQDLYGGFVGNNDRRLLNDLRALGGDKLAKARANFDDPRLAELLWRYRARNFPQT 417
Query: 722 LSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGK 778
LS +E +RW+ +R + ++ + + + EI+ + + A++ IL AL Y +
Sbjct: 418 LSPEEAERWEAHRAACLFDGEGGARTVEQLFTEIDEMSETADDRAQDILGALYDYAE 474
>gi|332531005|ref|ZP_08406927.1| exonuclease I [Hylemonella gracilis ATCC 19624]
gi|332039566|gb|EGI75970.1| exonuclease I [Hylemonella gracilis ATCC 19624]
Length = 488
Score = 487 bits (1254), Expect = e-134, Method: Compositional matrix adjust.
Identities = 228/482 (47%), Positives = 314/482 (65%), Gaps = 18/482 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF W+DYETFG+N RRDRP QFA IRTD LN I P+MLYC+PA D+LPDP ACL+T I
Sbjct: 4 TFFWHDYETFGVNPRRDRPSQFAGIRTDADLNEIGEPVMLYCRPADDYLPDPGACLLTGI 63
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ CL +G+PE++FA+ IE +PGTI VGYNTI FDDE+TRF+FWRNLI+PY REW+
Sbjct: 64 TPQTCLEHGVPEHEFAARIEHELAQPGTIGVGYNTIRFDDEVTRFLFWRNLIDPYAREWQ 123
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNN----GKPSFKLEHLSFVNNLSHKKAHDALS 487
N CSRWDL++V++ L P GI WP GKPSFKLEHL+ N LSH+ AHDALS
Sbjct: 124 NECSRWDLLDVVRLCRALRPEGIEWPMHREGEMKGKPSFKLEHLTAANGLSHEAAHDALS 183
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPI----ARPFFYITHMFSSKHS 543
DVRAT+ LARLIR+ PRLF+F L+LRKK V AE+G P ARPF +++ MF ++
Sbjct: 184 DVRATIALARLIRDKQPRLFDFALALRKKDAVAAELGLPTSQAQARPFLHVSGMFPAERG 243
Query: 544 YISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISM 600
+SLMWP+ HP NKN LI W+L DP + ++ IR L + + E + PI
Sbjct: 244 CLSLMWPLATHPTNKNELIAWDLSADPAELAHLTVDDIRLRLYTRTDDLPEGVSRLPIKS 303
Query: 601 IHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS 660
+HLN+SP+V+SNLK L L R+ DL+ A +N A + + + +W ++F +
Sbjct: 304 VHLNKSPMVVSNLKTLRPELAQRWGLDLDAALRNAAVARELPDMSALWPQVFQRPAQAGT 363
Query: 661 DLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIE 720
++DE+LY F+ +D +LA LR++ P++L+ F++ +L +++F YRARNF +
Sbjct: 364 P---DVDEDLYGGFVGNEDRRRLARLRALPPQELATSRAGFDDARLGDILFRYRARNFPD 420
Query: 721 TLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK----ILNALLMY 776
TL+ E RW +R++R + N++ + E++ L + A E + IL AL Y
Sbjct: 421 TLNEDEQARWLAHRVARLVEGADGARNLDALFAELDRLGQDATEQGDERGEAILEALYAY 480
Query: 777 GK 778
+
Sbjct: 481 AE 482
>gi|395761160|ref|ZP_10441829.1| exonuclease I [Janthinobacterium lividum PAMC 25724]
Length = 482
Score = 484 bits (1246), Expect = e-133, Method: Compositional matrix adjust.
Identities = 225/477 (47%), Positives = 312/477 (65%), Gaps = 10/477 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
TFLW+DYETFG RRDRP QFAAIRTD L I PIMLYC+PA DFLPDP+ACLIT
Sbjct: 3 TQTFLWHDYETFGAQPRRDRPAQFAAIRTDAELKEIGEPIMLYCQPANDFLPDPQACLIT 62
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ CL G+PE++FA+ IE F +PGTI VGYNTI FDDE+TRF+FWRNLI+PY RE
Sbjct: 63 GITPQQCLQLGVPEHQFAATIEAAFSEPGTIGVGYNTIRFDDEVTRFLFWRNLIDPYARE 122
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
WKN+C RWD+++V++ + L P GI WP +++G+ SFKLEHLS N L H AHDALSDV
Sbjct: 123 WKNHCGRWDILDVVRMTHALRPEGIEWPKRDDGQTSFKLEHLSKANGLVHAAAHDALSDV 182
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIA----RPFFYITHMFSSKHSYI 545
RAT+ LARLIR P+LF F L+L KK V +E+G +A +PF +++ MF ++ +
Sbjct: 183 RATIALARLIREKQPKLFEFCLALHKKDRVASEMGMHLAASERQPFLHVSGMFPAERGCL 242
Query: 546 SLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIH 602
++WP+ HP NKN ++ W+ +DP++ D + IR + +K + E +P+ +H
Sbjct: 243 GVVWPLATHPSNKNEILVWDCAYDPRELFSLDADTIRARMFTRKEAMPEGMTRLPVKSVH 302
Query: 603 LNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL 662
LN+SP+++ NLK LS + + DL A N + A++ N IW +F +N +
Sbjct: 303 LNKSPMLVGNLKTLSPAMAAHWGIDLEAARANAQLAATAPNMETIWADVFQRPGVN---V 359
Query: 663 ELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
L++DE+LYN F+S D L LR +P KL+ F +++L+EL+F YRARNF +TL
Sbjct: 360 ALDVDEDLYNGFVSNDDRRLLESLRRDTPAKLAAARPSFADERLQELLFRYRARNFPQTL 419
Query: 723 SYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGKI 779
S E RW+++R +R ++ I M + EI+ L + +E +IL L Y +I
Sbjct: 420 SVAESLRWEQHRAARLFDGDAGARTIEMLFTEIDVLSESVDERGEEILGELYDYAEI 476
>gi|300312923|ref|YP_003777015.1| exodeoxyribonuclease I [Herbaspirillum seropedicae SmR1]
gi|300075708|gb|ADJ65107.1| exodeoxyribonuclease I (3'-> 5' specific) protein [Herbaspirillum
seropedicae SmR1]
Length = 467
Score = 483 bits (1243), Expect = e-133, Method: Composition-based stats.
Identities = 219/428 (51%), Positives = 297/428 (69%), Gaps = 7/428 (1%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
N TFLW+DYETFG RRDRP QFAA+RTD LN I PIM+YCKPAPD+LPDP +CLIT
Sbjct: 3 NHTFLWHDYETFGAVPRRDRPAQFAAVRTDAELNEIGAPIMIYCKPAPDYLPDPVSCLIT 62
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ CL +G+PE++FA+ IE+ +PGTI VGYNTI FDDE+TRFMFWRNLI+PY RE
Sbjct: 63 GITPQHCLAHGLPEHEFAARIEQALGEPGTIGVGYNTIRFDDEVTRFMFWRNLIDPYARE 122
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+N C RWDL++V++ Y L P GI WP K++G SFKLEHLS N L H+ AHDALSDV
Sbjct: 123 WQNGCGRWDLLDVVRLTYALRPQGIQWPKKDDGSISFKLEHLSKANGLVHEAAHDALSDV 182
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR NNPRLF+F L+L KK AEIG P+ RPF + + MF H ++LMW
Sbjct: 183 RATIALARLIRQNNPRLFDFALALYKKDKAAAEIGLPVPRPFLHASGMFPVAHGCLALMW 242
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLNRS 606
P+ +HP NKN +I W+L HDP + D +R+ L K++ E + P+ IHLN+S
Sbjct: 243 PLGMHPTNKNEVIAWDLRHDPSELATLDAATVRERLFSKRDQLPEGVERLPVKSIHLNKS 302
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNI 666
P+V+ +LK LS+ D+ A ++ A+++ + T +W +++ S+ ++
Sbjct: 303 PMVVGSLKTLSAERAAELDIDVEAALRHADKAAALPDLTRLWSEVYQ----RESEGPADV 358
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
DE+LY FI D +L LR++SP+ L+ + F++ +L E++F YRAR+F ETLS +E
Sbjct: 359 DEDLYGGFIGNGDRRQLNQLRALSPQALATASVAFDDARLNEILFRYRARSFPETLSPEE 418
Query: 727 LKRWKKYR 734
+ W+++R
Sbjct: 419 AQHWEEHR 426
>gi|329907300|ref|ZP_08274615.1| Exodeoxyribonuclease I [Oxalobacteraceae bacterium IMCC9480]
gi|327547025|gb|EGF31914.1| Exodeoxyribonuclease I [Oxalobacteraceae bacterium IMCC9480]
Length = 477
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 222/470 (47%), Positives = 311/470 (66%), Gaps = 7/470 (1%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+ TFLW+DYETFG+N R DRP QFAAIRTD LN I + IMLYC+PA D+LPDP++CLIT
Sbjct: 3 SHTFLWHDYETFGVNTRSDRPAQFAAIRTDAELNEIGDEIMLYCQPANDYLPDPQSCLIT 62
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ CL G+PEY+FA+ IE F GT+ VGYNTI FDDEITRF+FWRNLI+PY RE
Sbjct: 63 GITPQVCLQRGLPEYQFAAAIEAAFSASGTVGVGYNTIRFDDEITRFLFWRNLIDPYARE 122
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+N C RWDL++V++ Y L P GI WP + GKPSF+LE L+ N ++H AHDALSDV
Sbjct: 123 WQNQCGRWDLMDVVRMTYALRPEGIHWPMNDEGKPSFRLELLTKANGIAHAAAHDALSDV 182
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR P+LF+F +L KK V AEIG P +PF +++ MF ++ + +MW
Sbjct: 183 RATIALARLIRTQQPKLFDFCFALHKKDRVSAEIGLPARKPFLHVSGMFPAERGCLGVMW 242
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLNRS 606
P+ +P NKN +I W+L HDP + D + IR + + E + PI IHLN+S
Sbjct: 243 PLATYPTNKNEVIAWDLSHDPSELATLDADTIRLRMFTRSADLPEGVTRLPIKTIHLNKS 302
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNI 666
P+V+ NLK LS + +++ DL A ++ A+++++ +W+++F D +
Sbjct: 303 PMVVGNLKTLSPAMAEKWQIDLEQAHRHATIAATLVDMDALWQQVFQRPAQATPD----V 358
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
DE+LYN F+ D KL LR++SP L+ + F++ +LEEL+F YRARNF +TL E
Sbjct: 359 DEDLYNGFVGNGDRRKLTELRALSPTALAKTHPGFDDVRLEELLFRYRARNFPDTLDAAE 418
Query: 727 LKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMY 776
+RW+++R R + +++ + EI+ L ++A+ +IL AL Y
Sbjct: 419 AERWEQHRSDRLFEGSAGARTVDILFGEIDQLSEQADTRGEEILGALYDY 468
>gi|407939292|ref|YP_006854933.1| exonuclease I [Acidovorax sp. KKS102]
gi|407897086|gb|AFU46295.1| exonuclease I [Acidovorax sp. KKS102]
Length = 482
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/476 (47%), Positives = 312/476 (65%), Gaps = 13/476 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFLW+DYETFG N RRDRP QFAAIRTD LN I P+MLYC+PA D+LPDP +CLIT I
Sbjct: 5 TFLWHDYETFGANTRRDRPAQFAAIRTDAELNEIGEPLMLYCQPANDYLPDPVSCLITGI 64
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ CL G+PE++FA+ IE F +PGTI VGYNTI FDDEITRFMFWRNLI+PY REW+
Sbjct: 65 TPQQCLEQGVPEHQFAARIESEFAQPGTIGVGYNTIRFDDEITRFMFWRNLIDPYAREWQ 124
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNG-KPSFKLEHLSFVNNLSHKKAHDALSDVR 490
N C RWDL++V++ Y L P GI WP K +G PSFKLEHLS N L H AHDALSDVR
Sbjct: 125 NQCGRWDLLDVVRMTYALRPDGINWPKKEDGVTPSFKLEHLSKANGLQHDAAHDALSDVR 184
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWP----IARPFFYITHMFSSKHSYIS 546
AT+ LARLIR +N +LF+F LSL KK V AE+ P AR F +++ MF ++ ++
Sbjct: 185 ATIALARLIRQHNTKLFDFALSLHKKDRVAAELRLPATTATARAFLHVSGMFPTERGCLA 244
Query: 547 LMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHL 603
+MWP+ HP NKN LI W+L HDP++ ++ IR + K ++ E + PI IHL
Sbjct: 245 VMWPLASHPTNKNELIAWDLAHDPRELATLNVEDIRLRMFSKADALPEGVTRLPIKTIHL 304
Query: 604 NRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLE 663
N+SP+V+ N+ L+ L R+ DL A ++ + A ++ + + IW +F + D
Sbjct: 305 NKSPMVVGNVNTLTPALAQRWGIDLAQAAQHAEVARALPDMSGIWPAVFARPQEPAPD-- 362
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
+D++LY F+ D L LR++S KL+ F++ +L EL++ YRARNF +TLS
Sbjct: 363 --VDQDLYGGFLGNNDRRLLNDLRTLSGDKLAKARAHFDDPRLAELLWRYRARNFPQTLS 420
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK-ILNALLMYGK 778
+E +RW+ +R + ++ + + + EI+ L + A++ T+ IL AL Y +
Sbjct: 421 PEEQERWEAHRAACLFDGQGGARTVEQLFTEIDELSETADDERTQDILGALYDYAE 476
>gi|398805944|ref|ZP_10564899.1| exonuclease I [Polaromonas sp. CF318]
gi|398090122|gb|EJL80611.1| exonuclease I [Polaromonas sp. CF318]
Length = 489
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 218/486 (44%), Positives = 309/486 (63%), Gaps = 20/486 (4%)
Query: 309 GNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLI 368
+ TFLW+DYETFG+N RRDRP QFA IRTD LN I P+MLYCKPA D+LPDP +CL+
Sbjct: 2 ASHTFLWHDYETFGINPRRDRPAQFAGIRTDADLNEIGEPLMLYCKPASDYLPDPESCLL 61
Query: 369 TKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYER 428
T ITPQ CL G+ E++FA+ IE + +PGTI VGYNTI FDDE+TR +FWRNLI+PY R
Sbjct: 62 TGITPQLCLERGVAEHEFAAGIEAVLAQPGTIGVGYNTIRFDDEVTRHLFWRNLIDPYAR 121
Query: 429 EWKNNCSRWDLINVIKAFYVLSPYGITWPYKNN---------GKPSFKLEHLSFVNNLSH 479
EW+N+C RWDL++V++ Y L P GI WP K + +PSFKLE L+ N L H
Sbjct: 122 EWQNDCGRWDLLDVVRMCYALRPEGIVWPRKPDERFPDDPSVTRPSFKLEDLARANGLMH 181
Query: 480 KKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWP----IARPFFYIT 535
AHDALSDVRAT+ LARLIR P+LF+F LSL KK V E+G P A+PF +I+
Sbjct: 182 DAAHDALSDVRATIALARLIRQAQPKLFDFALSLHKKDRVATELGLPTSPQTAQPFLHIS 241
Query: 536 HMFSSKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED 595
MF + +++MWP+ HP NKN L+ W+L DP + L D+ +R L + E
Sbjct: 242 GMFPPERGCLAVMWPLATHPTNKNELLAWDLSQDPAELPLLDVATLRQRLFSRSADLPEG 301
Query: 596 I---PISMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF 652
+ PI +HLN+SP+V+ L L+ + ++ D+ A +N + A+++ + + IW ++F
Sbjct: 302 VQRLPIKSVHLNKSPMVVRKLATLTPEMAAQWGVDIPAALRNAEKAAALPDMSAIWPEVF 361
Query: 653 LDYKINNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFL 712
K D +DE+LY F+ D +L LR++SP +L++ F++ +LEE++F
Sbjct: 362 QRPKEAAPD----VDEDLYGGFVGNADRRRLNQLRALSPAELAHSRTGFDDDRLEEILFR 417
Query: 713 YRARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNA 772
YRARNF ETLS ++ +RW+ +R++ + N++ + I+ L + +E IL A
Sbjct: 418 YRARNFPETLSPEDTERWEAHRVAWLLEGEGGARNVDALFARIDVLSETTDERGEAILGA 477
Query: 773 LLMYGK 778
L Y +
Sbjct: 478 LYDYAE 483
>gi|395009189|ref|ZP_10392756.1| exonuclease I [Acidovorax sp. CF316]
gi|394312874|gb|EJE49984.1| exonuclease I [Acidovorax sp. CF316]
Length = 479
Score = 478 bits (1230), Expect = e-131, Method: Compositional matrix adjust.
Identities = 222/475 (46%), Positives = 310/475 (65%), Gaps = 12/475 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFLW+DYETFG N RRDRP QFAAIRTD LN I P+ ++C+PA D+LPDP +CLIT I
Sbjct: 3 TFLWHDYETFGANTRRDRPAQFAAIRTDADLNEIGEPLNIFCQPASDYLPDPVSCLITGI 62
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ CL G+PE+ FA+ IE +PGTI VGYNTI FDDEITRFMFWRNLI+PY REW+
Sbjct: 63 TPQQCLEQGMPEHAFAARIEAELARPGTIGVGYNTIRFDDEITRFMFWRNLIDPYAREWQ 122
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N C RWDL++V++ Y L P GITWP K +G PSFKLEHLS N L H+ AHDALSDVRA
Sbjct: 123 NQCGRWDLLDVVRMTYALRPDGITWPKKEDGAPSFKLEHLSKANGLLHEAAHDALSDVRA 182
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWP----IARPFFYITHMFSSKHSYISL 547
T+ LARLIR +N +LF+F LSL KK V AE+ P A+PF +++ MF + +++
Sbjct: 183 TIALARLIRQHNTKLFDFALSLHKKDRVAAELRLPATAITAKPFLHVSGMFPVERGCLAV 242
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLN 604
MWP+ HP NKN LI W+L HDP + +IR + + E + PI IHLN
Sbjct: 243 MWPLASHPTNKNELIAWDLAHDPTPLASMGVEEIRLRMFSRAADLPEGVTRLPIKTIHLN 302
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL 664
+SP+V+ N+ L++ + DL A ++ + A + + + IW ++F + D
Sbjct: 303 KSPMVVGNVNTLTAERARHWNMDLPQAAQHAEIARVLPDMSGIWPQVFARPEEPTPD--- 359
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
+D++LY F+ D +L +R+MS +KL+ F++ +L+EL++ YRARNF +TL+
Sbjct: 360 -VDQDLYGGFVGNGDRRQLTDMRAMSGEKLARTRLSFDDPRLKELVWRYRARNFPQTLTP 418
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK-ILNALLMYGK 778
+E +RW+K+R + ++ + + EI++L + A++ T+ IL AL Y +
Sbjct: 419 EEHERWEKHRAACLFDGAGGARTVEQLFTEIDNLSETADDDRTQDILGALYDYAE 473
>gi|326316823|ref|YP_004234495.1| exodeoxyribonuclease I [Acidovorax avenae subsp. avenae ATCC 19860]
gi|323373659|gb|ADX45928.1| Exodeoxyribonuclease I [Acidovorax avenae subsp. avenae ATCC 19860]
Length = 478
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 215/474 (45%), Positives = 304/474 (64%), Gaps = 11/474 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF W+DYETFG + RRDRP QFA IRTD LN I P+M+YC+PAPD+LPDP +CL+T I
Sbjct: 3 TFFWHDYETFGADPRRDRPAQFAGIRTDADLNEIGEPVMMYCRPAPDYLPDPESCLLTGI 62
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ CL G+PE++FA+ IE +PGTI VGYNTI FDDEITRFMFWRNLI+PY REW+
Sbjct: 63 TPQLCLERGLPEHEFAARIEAELARPGTIGVGYNTIRFDDEITRFMFWRNLIDPYAREWQ 122
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N C RWDL++V++ Y L P GI WP K +G PS KLEHLS N L H+ AHDALSDVRA
Sbjct: 123 NECGRWDLLDVVRLTYALRPDGIEWPRKEDGSPSLKLEHLSRANGLVHEAAHDALSDVRA 182
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWP----IARPFFYITHMFSSKHSYISL 547
T+ LARLIR P+LF F L LR+K V AE+ P ARPF + + MF + + +
Sbjct: 183 TIALARLIRQRQPKLFEFALGLRRKDRVAAELRLPATADTARPFLHASGMFPADRGCLGI 242
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLN 604
+WP+ HP N+N LI W+L HDP + D +IR+ L + E + P+ +HLN
Sbjct: 243 LWPLASHPTNRNELIAWDLAHDPSELAGLDAARIRERLFTRTADLPEGVARLPVKSVHLN 302
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL 664
+SP+V+ N+ L+ + R+ D+ A + + A ++ + + IW ++F K D
Sbjct: 303 KSPMVVGNVNTLTPAMAQRWGIDMERAAAHAEIARALPDMSAIWAEVFARPK----DAPA 358
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
++D++LY F+ +D +L LR++ P++L+ F++++LEEL + +RARNF ETL
Sbjct: 359 DVDQDLYGGFVGNEDRRRLQRLRTLPPQELALARPGFDDERLEELAWRFRARNFPETLDE 418
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGK 778
+ +RW+ R++R + + + +++L + A+E IL AL Y +
Sbjct: 419 ADRERWEALRVARLMEGEGGGLTFDALFARLDTLGETADERGEAILGALYEYAE 472
>gi|120611894|ref|YP_971572.1| exonuclease I [Acidovorax citrulli AAC00-1]
gi|120590358|gb|ABM33798.1| Exodeoxyribonuclease I subunit C [Acidovorax citrulli AAC00-1]
Length = 478
Score = 471 bits (1213), Expect = e-129, Method: Compositional matrix adjust.
Identities = 215/474 (45%), Positives = 305/474 (64%), Gaps = 11/474 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF W+DYETFG + RRDRP QFA IRTD LN I P+M+YC+PAPD+LPDP +CL+T I
Sbjct: 3 TFFWHDYETFGADPRRDRPAQFAGIRTDADLNEIGEPVMIYCRPAPDYLPDPESCLLTGI 62
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ CL G+PE++FA+ IE +PGTI VGYNTI FDDEITRFMFWRNLI+PY REW+
Sbjct: 63 TPQLCLERGLPEHEFAARIEAELARPGTIGVGYNTIRFDDEITRFMFWRNLIDPYAREWQ 122
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N C RWDL++V++ Y L P GI WP K +G PS KLEHLS N L H+ AHDALSDVRA
Sbjct: 123 NECGRWDLLDVVRLTYALRPDGIEWPRKEDGSPSLKLEHLSRANGLVHEAAHDALSDVRA 182
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWP----IARPFFYITHMFSSKHSYISL 547
T+ LARLIR PRLF F L LR+K V AE+ P ARPF +++ MF + + +
Sbjct: 183 TIALARLIRERQPRLFEFALGLRRKDRVAAELRLPATADTARPFLHVSGMFPADRGCLGI 242
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLN 604
+WP+ HP N+N LI W+L HDP + D +IR+ L + E + P+ +HLN
Sbjct: 243 LWPLASHPTNRNELIAWDLAHDPSELAGLDAARIRERLFTRTADLPEGVARLPVKSVHLN 302
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL 664
+SP+V+ N+ L+ + R+ D+ A + + A ++ + + IW ++F + +D
Sbjct: 303 KSPMVVGNVNTLTPAMAQRWGIDVERAAAHAELARALPDMSAIWAEVFARPREAPAD--- 359
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
+D++LY F+ +D +L LR++ P++L+ F++++LEEL + +RARNF ETL
Sbjct: 360 -VDQDLYGGFVGNEDRRRLQRLRTLPPQELALARPGFDDERLEELAWRFRARNFPETLDE 418
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGK 778
+ +RW+ R++R + + + +++L + A+E IL AL Y +
Sbjct: 419 ADRERWEALRVARLMEGEGGGLTFDALFARLDTLGETADERGEAILGALYEYAE 472
>gi|124266553|ref|YP_001020557.1| exonuclease I [Methylibium petroleiphilum PM1]
gi|124259328|gb|ABM94322.1| Exodeoxyribonuclease I subunit C [Methylibium petroleiphilum PM1]
Length = 479
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 216/472 (45%), Positives = 295/472 (62%), Gaps = 9/472 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F W+DYETFG RRDRP QFA +RTD LN I P+M YC+PAPDFLPDP +CL+T I
Sbjct: 5 SFYWHDYETFGRWPRRDRPAQFAGVRTDAELNEIGPPLMHYCQPAPDFLPDPESCLLTGI 64
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
PQ CL G+PE+ FA+ IE+ PGT+ VGYNTI FDDE+TR +FWRNL++PY REW+
Sbjct: 65 LPQTCLEQGLPEHAFAAAIERELAAPGTVGVGYNTIRFDDEVTRHLFWRNLMDPYAREWQ 124
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N C RWDL++V++ Y L P GI WP +G+ SFKLEHL+ N L+H+ AHDALSDVRA
Sbjct: 125 NGCGRWDLLDVVRCTYALRPEGIEWPRHEDGRASFKLEHLTAANGLAHEAAHDALSDVRA 184
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+GLARLIR + PRL++F L +K V+AEIG RPF +I+ M+ ++ ++ +WP+
Sbjct: 185 TIGLARLIRRHQPRLWDFCFRLHRKDAVMAEIGAGARRPFLHISGMYPAERGCLAAVWPL 244
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN LI W+L DP + D IR L K E +PI IH+N+SPI
Sbjct: 245 GAHPTNKNELIVWDLAADPSELYGLDAAAIRQRLFTKAEDLPEGTTRLPIKSIHINKSPI 304
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFK--NIKCASSILNNTYIWKKIFLDYKINNSDLELNI 666
VI NLK LS + R+ +D + +I A L +W +F + ++
Sbjct: 305 VIGNLKTLSPAMAERWGYDAARVQRHADIALAHDALPRA-LWADVFARPAPEQAP---DV 360
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
DE+LY F+S D L LR + P+ L+ FE+ +LEEL+F YRARNF +TL +E
Sbjct: 361 DEDLYGGFVSNADRRTLERLRGLPPEGLAGQRPSFEDGRLEELLFRYRARNFPDTLDAEE 420
Query: 727 LKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGK 778
+W+++R R + ++ F+ I++L + A+E IL AL Y +
Sbjct: 421 RAQWEQHRAERLHLGVGGGSSLAAFFERIDALSESADERGQDILGALYDYAE 472
>gi|347821590|ref|ZP_08875024.1| exonuclease I [Verminephrobacter aporrectodeae subsp. tuberculatae
At4]
Length = 484
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 220/478 (46%), Positives = 302/478 (63%), Gaps = 15/478 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFLW+DYETFG + RRDRP QFAAIRTD L+ I P+MLYC+PA D+LPDP+ACL+T I
Sbjct: 5 TFLWHDYETFGTDTRRDRPAQFAAIRTDAELHEIGAPLMLYCQPANDYLPDPQACLLTGI 64
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ CL G+PE++FA+ IE F +P TI VGYN+I FDDEITRFMFWRNLI+PY REW+
Sbjct: 65 TPQHCLEQGLPEHQFAARIEAEFARPATIGVGYNSIRFDDEITRFMFWRNLIDPYAREWQ 124
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N C RWDL++V++ + L P GITWP + +GKPSF+L LS N L H+ AHDALSDVRA
Sbjct: 125 NQCGRWDLLDVVRMTHALRPDGITWPRQEDGKPSFRLGDLSRANGLLHEAAHDALSDVRA 184
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWP----IARPFFYITHMFSSKHSYISL 547
T+ LARL+R +N +LF+F L L KK V AE+ P +ARPF +++ MF + +++
Sbjct: 185 TIALARLVREHNAKLFDFALGLHKKDRVAAELRLPTSAAVARPFLHVSGMFPVERGCLAV 244
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
MWP+ HP+NKN LI W+L DP L ++IR L K ++ E +PI I LN
Sbjct: 245 MWPLANHPVNKNELIAWDLSQDPAALLTLGADEIRLRLFTKADALPEGLTRLPIKTIRLN 304
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL 664
RSP+V+ N+ L+ L R+ DL A ++ + A ++ + + IW +F + D
Sbjct: 305 RSPMVVGNVNTLTPALAQRWGIDLAQAAQHAEGARALPDMSAIWPAVFARAPEPDPD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRS----MSPKKLSNVNFCFENKKLEELIFLYRARNFIE 720
+D++LY F+ D L LRS M + + F++ +L EL + YRARNF
Sbjct: 362 -VDQDLYGGFVGNNDRRLLNDLRSSAATMGGGQGAKPRAGFDDPRLAELFWRYRARNFPG 420
Query: 721 TLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGK 778
TLS +E RW +R + ++ + F+ EI++L A+E IL L Y +
Sbjct: 421 TLSPEETGRWDAHRAACLFHGAGGARTVEQFFAEIDALSDTADERAQGILGTLYDYAE 478
>gi|319762823|ref|YP_004126760.1| exodeoxyribonuclease I [Alicycliphilus denitrificans BC]
gi|330824902|ref|YP_004388205.1| exodeoxyribonuclease I [Alicycliphilus denitrificans K601]
gi|317117384|gb|ADU99872.1| Exodeoxyribonuclease I [Alicycliphilus denitrificans BC]
gi|329310274|gb|AEB84689.1| Exodeoxyribonuclease I [Alicycliphilus denitrificans K601]
Length = 478
Score = 461 bits (1187), Expect = e-126, Method: Compositional matrix adjust.
Identities = 214/475 (45%), Positives = 315/475 (66%), Gaps = 13/475 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFLW+DYETFG + RRDRP QFAAIRTD LN I P+MLYC+PA D+LPDP++CLIT I
Sbjct: 3 TFLWHDYETFGTDTRRDRPAQFAAIRTDAQLNEIGEPLMLYCRPANDYLPDPQSCLITGI 62
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ CL G+PE++FA+ IE PGTI VGYNTI FDDEITRFMFWRNL++PY REW+
Sbjct: 63 TPQLCLEKGVPEHQFAARIEAELALPGTIGVGYNTIRFDDEITRFMFWRNLMDPYAREWQ 122
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N C RWDL++V++ Y L P GI WP +GK SF+LE+L+ N L+H+ AHDALSDVRA
Sbjct: 123 NQCGRWDLLDVVRLAYALRPDGIEWPVA-DGKTSFRLENLTKANGLAHEAAHDALSDVRA 181
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWP----IARPFFYITHMFSSKHSYISL 547
T+ LARL+R NPRLF+F L LRKK V AE+ P ARPF +++ MF ++ +++
Sbjct: 182 TIALARLVRARNPRLFDFALGLRKKDRVAAELRLPATAQTARPFLHVSGMFGAERGCLAV 241
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLN 604
MWP+ HP NKN L+ W+L HDP + ++IR L + E + P+ +HLN
Sbjct: 242 MWPLASHPTNKNELLAWDLAHDPAELATLSADEIRQRLFTRAADLPEGVTRLPLKSVHLN 301
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL 664
+SP+V+ N+ L+ + R+ D+ A ++ + A + + + IW ++F + +
Sbjct: 302 KSPMVVGNVNTLTPAVAQRWGLDMAQAARHAEAARRLPDMSAIWAQVFQ----RPQEGPV 357
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
++D++LY F+ +D +L LR++SP++L+ F++++L EL++ YRARNF +TLS
Sbjct: 358 DVDQDLYGGFLGNEDRRRLNRLRALSPEELARERPGFDDERLAELVWRYRARNFPQTLSP 417
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK-ILNALLMYGK 778
+E +RW+ +R++ + + + ++ L ++A++ T+ IL A+ Y +
Sbjct: 418 EEHERWEAHRVAMLVEGEGGGLTFDALFERLDELGEQADDERTEAILGAIYDYAE 472
>gi|121594205|ref|YP_986101.1| exonuclease I [Acidovorax sp. JS42]
gi|120606285|gb|ABM42025.1| Exodeoxyribonuclease I subunit C [Acidovorax sp. JS42]
Length = 479
Score = 461 bits (1185), Expect = e-126, Method: Compositional matrix adjust.
Identities = 217/475 (45%), Positives = 314/475 (66%), Gaps = 13/475 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFLW+DYETFG N RRDRP QFAA+RTD LN I P+M+YC+PA D+LPDP++CLIT I
Sbjct: 3 TFLWHDYETFGANTRRDRPAQFAAVRTDAELNEIGEPLMIYCRPANDYLPDPQSCLITGI 62
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ CL G+PE +FA+ IE PGTI VGYNTI FDDEITRFMFWRNL++PY REW+
Sbjct: 63 TPQLCLEKGLPEREFAARIEAELALPGTIGVGYNTIRFDDEITRFMFWRNLMDPYAREWQ 122
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N C RWDL++V++ Y L P GI WP + +GKPSF+LEHLS N L+H+ AHDALSDVRA
Sbjct: 123 NQCGRWDLLDVVRLTYALRPEGIEWP-EVDGKPSFRLEHLSKANGLAHEAAHDALSDVRA 181
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPI----ARPFFYITHMFSSKHSYISL 547
T+ LARLIR+ NPRLF+F LSL KK V AE+ P ARPF +++ MF ++ +++
Sbjct: 182 TIALARLIRSRNPRLFDFALSLHKKDRVAAELRLPTTAQEARPFLHVSGMFPAERGCLAV 241
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLN 604
MWP+ HP NKN L+ W+L DP + ++IR L + E + P+ +HLN
Sbjct: 242 MWPLASHPTNKNELLAWDLAQDPSELARLSADEIRTRLFTRAADLPEGVTRLPLKSVHLN 301
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL 664
+SP+V+ NL L+ ++ R+ DL A + A ++ + T +W ++F ++ L
Sbjct: 302 KSPMVVGNLNTLTPDMAQRWGIDLPQAALHAAAARALPDLTAVWAQVFQ----RPAEGPL 357
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
++D++LY F+ +D +L LR++ ++L++ F++ +L EL++ YRARNF TLS
Sbjct: 358 DVDQDLYGGFVGNEDRRRLNRLRALPGEELAHERLGFDDARLAELVWRYRARNFPHTLSP 417
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK-ILNALLMYGK 778
+E +RW+ +R++ + + + +++L +A++ T+ IL A+ Y +
Sbjct: 418 EEQERWEAHRVAMLVEGEGGGLTFDALFERLDTLGAEADDERTEAILGAVYDYAE 472
>gi|171059394|ref|YP_001791743.1| exonuclease I [Leptothrix cholodnii SP-6]
gi|170776839|gb|ACB34978.1| Exodeoxyribonuclease I [Leptothrix cholodnii SP-6]
Length = 484
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 212/476 (44%), Positives = 301/476 (63%), Gaps = 12/476 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF W+DYETFG + R DRP QFA IRTD+ LN ID P+M +C+PAPD+LPDP +CL+T I
Sbjct: 5 TFFWHDYETFGRSPRSDRPAQFAGIRTDLDLNEIDAPLMQHCQPAPDYLPDPESCLLTGI 64
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
PQ CL G+PE+ FA IE +PGTI VGYN+I FDDE+TR +FWRNLI+PY REW+
Sbjct: 65 VPQTCLELGVPEHTFADAIEDQLARPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYAREWQ 124
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N C RWDL++V++ Y L P GI WP ++G+PSFKLEHL+ N +SH+ AHDALSDVRA
Sbjct: 125 NECGRWDLLDVVRCCYALRPDGIQWPRHDDGRPSFKLEHLTAANGISHEGAHDALSDVRA 184
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEI--GWPIARPFFYITHMFSSKHSYISLMW 549
T+ LARLI+N P+LF+F L LRKK VLAEI RPF +I+ M+ + ++++W
Sbjct: 185 TIALARLIKNARPKLFDFCLRLRKKDAVLAEIEGAQRQGRPFLHISGMYGPERGCLAIVW 244
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLNRS 606
P+ HP NKN +I W+L DP + D IR L K + E + PI IH+N+S
Sbjct: 245 PLAPHPTNKNEIIVWDLAEDPGELFTLDAEAIRARLFVKASELPEGVGRLPIKSIHINKS 304
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASS-ILNNTYIWKKIFLDYKINNSDLELN 665
P+VI+ LK L + + R+ D + A + + A+ IW ++F +
Sbjct: 305 PVVIAQLKTLGAEMAQRWGIDKDQALHHAELAARKGATMAGIWPEVFARPAAAEPP---D 361
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+DE+LY FI + D L +R+++P+KL++ F + +L+EL+ +RARNF +TL +
Sbjct: 362 VDEDLYGGFIGQDDRRTLQRVRALAPEKLADKLPTFNDPRLDELLLRWRARNFPQTLRDE 421
Query: 726 ELKRWKKYRISRFYNKKNNLYNINMFYLEIESL---LKKANEHDTKILNALLMYGK 778
E RW+++ R ++ + F+ I++L L + +E +IL AL Y +
Sbjct: 422 ERARWERHCARRLHDGAGGAMTLAAFFERIDTLGEALPEDDERGPEILGALYDYAE 477
>gi|222110882|ref|YP_002553146.1| exonuclease i [Acidovorax ebreus TPSY]
gi|221730326|gb|ACM33146.1| Exodeoxyribonuclease I [Acidovorax ebreus TPSY]
Length = 479
Score = 458 bits (1178), Expect = e-125, Method: Compositional matrix adjust.
Identities = 217/475 (45%), Positives = 312/475 (65%), Gaps = 13/475 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFLW+DYETFG N RRDRP QFAA+RTD LN I P+M+YC+PA D+LPDP++CLIT I
Sbjct: 3 TFLWHDYETFGANTRRDRPAQFAAVRTDAELNEIGEPLMIYCRPANDYLPDPQSCLITGI 62
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ CL G+PE +FA+ IE PGTI VGYNTI FDDEITRFMFWRNL++PY REW+
Sbjct: 63 TPQLCLEKGLPEREFAARIEAELALPGTIGVGYNTIRFDDEITRFMFWRNLMDPYAREWQ 122
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N C RWDL++V++ Y L P GI WP + +GKPSF+LEHLS N L+H AHDALSDVRA
Sbjct: 123 NQCGRWDLLDVVRLTYALRPEGIEWP-EVDGKPSFRLEHLSQANGLAHDAAHDALSDVRA 181
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPI----ARPFFYITHMFSSKHSYISL 547
T+ LARLIR+ NPRLF+F LSL KK V AE+ P ARPF +++ MF ++ +++
Sbjct: 182 TIALARLIRSRNPRLFDFALSLHKKDRVAAELRLPTTAQEARPFLHVSGMFPTERGCLAV 241
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLN 604
MWP+ HP NKN L+ W+L DP + ++IR L + E + P+ +HLN
Sbjct: 242 MWPLASHPTNKNELLAWDLAQDPSELARLSADEIRTRLFTRAADLPEGVTRLPLKSVHLN 301
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL 664
+SP+V+ NL L+ + R+ DL A + A ++ + T +W ++F ++ L
Sbjct: 302 KSPMVVGNLNTLTPAMAQRWGIDLPQAALHAAAARALPDLTAVWAQVFQ----RPAEGPL 357
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
++D++LY F+ +D +L LR++ ++L++ F++ +L EL++ YRARNF TLS
Sbjct: 358 DVDQDLYGGFVGNEDRRRLNRLRALPGEELAHERLGFDDARLAELVWRYRARNFPHTLSP 417
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK-ILNALLMYGK 778
+E +RW+ +R++ + + + +++L +A++ T+ IL A+ Y +
Sbjct: 418 EEQERWEAHRMAVLVEGEGGGLTFDALFERLDTLGAEADDERTEAILGAVYDYAE 472
>gi|333914934|ref|YP_004488666.1| exodeoxyribonuclease I [Delftia sp. Cs1-4]
gi|333745134|gb|AEF90311.1| Exodeoxyribonuclease I [Delftia sp. Cs1-4]
Length = 479
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 212/474 (44%), Positives = 295/474 (62%), Gaps = 11/474 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF W+DYETFG R DRP QFA IRTD LN I P+M YC+PA D+LPDP++CLIT I
Sbjct: 4 TFFWHDYETFGAQPRYDRPAQFAGIRTDAELNEIGEPVMWYCQPAGDYLPDPQSCLITGI 63
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ CL G+PE +FA+ IE + GT+ VGYNTI FDDEITRFMFWRNLI+PY REW+
Sbjct: 64 TPQQCLEQGMPEAQFAACIEAELAQAGTVGVGYNTIRFDDEITRFMFWRNLIDPYAREWQ 123
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N C RWDL++V++ Y L P GI WP K +G PSFKLE L+ N L H+KAHDALSDVRA
Sbjct: 124 NGCGRWDLLDVVRMVYALRPEGIVWPKKEDGSPSFKLEDLARANGLLHEKAHDALSDVRA 183
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPI----ARPFFYITHMFSSKHSYISL 547
T+GLARLIR PRLF+F SL KK VL E+G P ARPF +++ M + I++
Sbjct: 184 TIGLARLIRKVQPRLFDFAFSLHKKDRVLQEMGLPAEPAHARPFLHVSGMIRPERGCIAV 243
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
MWP+ HP NKN +I W+L DP + D++ +R L + E +PI IH+N
Sbjct: 244 MWPLATHPTNKNEIICWDLAQDPSELASIDVDTLRLRLFSRAADLPEGMQRLPIKSIHVN 303
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL 664
+SP+V+ +LK LS + ++ D+ + A + + + +W+ + + L
Sbjct: 304 KSPMVVGSLKTLSPAMAAQWGIDVEQCMGHAAIARDLPDMSALWRAVHQ----RPAQEGL 359
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
+ D++LY F+ +D +L LRS+S ++L+ F++ +L EL+F YRARNF +L+
Sbjct: 360 DADQDLYGGFVGNEDRRRLNHLRSLSAQELALDRTGFDDARLTELLFRYRARNFPASLNP 419
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGK 778
E +RW ++ + + K + ++ L + A+E +IL AL Y +
Sbjct: 420 AERQRWLQHCAACLIDGKGGARTAEQMFAMVDQLSETADERGEEILGALYDYAE 473
>gi|160898944|ref|YP_001564526.1| exonuclease I [Delftia acidovorans SPH-1]
gi|160364528|gb|ABX36141.1| Exodeoxyribonuclease I [Delftia acidovorans SPH-1]
Length = 479
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 212/474 (44%), Positives = 295/474 (62%), Gaps = 11/474 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF W+DYETFG R DRP QFA IRTD LN I P+M YC+PA D+LPDP++CLIT I
Sbjct: 4 TFFWHDYETFGAQPRYDRPAQFAGIRTDAELNEIGEPVMWYCQPAGDYLPDPQSCLITGI 63
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ CL G+PE +FA+ IE + GT+ VGYNTI FDDEITRFMFWRNLI+PY REW+
Sbjct: 64 TPQQCLEQGMPEAQFAARIEAELAQAGTVGVGYNTIRFDDEITRFMFWRNLIDPYAREWQ 123
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N C RWDL++V++ Y L P GI WP K +G PSFKLE L+ N L H+KAHDALSDVRA
Sbjct: 124 NGCGRWDLLDVVRMVYALRPEGIVWPKKEDGSPSFKLEDLARANGLLHEKAHDALSDVRA 183
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPI----ARPFFYITHMFSSKHSYISL 547
T+GLARLIR PRLF+F SL KK VL E+G P ARPF +++ M + I++
Sbjct: 184 TIGLARLIRKVQPRLFDFAFSLHKKDRVLQEMGLPAEPAHARPFLHVSGMIRPERGCIAV 243
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
MWP+ HP NKN +I W+L DP + D++ +R L + E +PI IH+N
Sbjct: 244 MWPLATHPTNKNEIICWDLAQDPSELASIDVDTLRLRLFSRAADLPEGMQRLPIKSIHVN 303
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL 664
+SP+V+ +LK LS+ + ++ D+ + A + + + +W+ + + L
Sbjct: 304 KSPMVVGSLKTLSAAMAAQWGIDVEQCMGHAAIARDLPDMSALWRAVHQ----RPAQEGL 359
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
+ D++LY F+ +D +L LRS+S ++L+ F++ +L EL+F YRARNF +L+
Sbjct: 360 DADQDLYGGFVGNEDRRRLNHLRSLSAQELALDRTGFDDARLTELLFRYRARNFPASLNP 419
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGK 778
E +RW ++ + K + ++ L + A+E +IL AL Y +
Sbjct: 420 AERQRWLQHCAACLIEGKGGARTAEQMFAMVDQLSETADERGEEILGALYDYAE 473
>gi|299529972|ref|ZP_07043399.1| exonuclease I [Comamonas testosteroni S44]
gi|298721952|gb|EFI62882.1| exonuclease I [Comamonas testosteroni S44]
Length = 479
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 207/473 (43%), Positives = 293/473 (61%), Gaps = 11/473 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF W+DYETFG R DRP QFA IRTD LN I P+M YC+PA D+LPDP++CLIT I
Sbjct: 4 TFFWHDYETFGAQPRYDRPAQFAGIRTDDQLNEIGEPVMWYCQPANDYLPDPQSCLITGI 63
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L G+ E++FA++IE + GT+ VGYNTI FDDEITRFMFWRNLI+PY REW+
Sbjct: 64 TPQRALEEGVAEHEFAALIEAELAQAGTVGVGYNTIRFDDEITRFMFWRNLIDPYAREWQ 123
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N C RWDL++V++ Y L P GI WP K +G PSF+LE L+ N L H++AHDALSDVRA
Sbjct: 124 NGCGRWDLLDVVRMVYALRPEGIQWPTKEDGTPSFRLEDLARANGLLHEQAHDALSDVRA 183
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPI----ARPFFYITHMFSSKHSYISL 547
T+ LARLIR PRLF+F L KK L E+G P ARPF ++T M S + +
Sbjct: 184 TIALARLIREKQPRLFDFAFGLHKKDGALREMGLPATQEHARPFLHVTGMISPARGCLGV 243
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLN 604
MWP+ HP NKN +I W+L DP + I ++R L ++ E + PI IH+N
Sbjct: 244 MWPLATHPTNKNEVICWDLAADPAELSGISIEELRLRLFTRQAELPEGVSRLPIKSIHVN 303
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL 664
+SP+V+ +LK LS + ++ D+ A ++ A + + + WK +F + L
Sbjct: 304 KSPMVVGSLKTLSPAMAEKWGVDMELAMQHAAIARDLPDMSAQWKSVF----TREAGEPL 359
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
+ D++LY F+ +D +L ++ +SP++L+ F++ +L EL++ YRARNF +TL
Sbjct: 360 DADQDLYGGFVGNEDRRRLERIKRLSPQELALDKTGFDDARLTELVWRYRARNFPQTLDA 419
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYG 777
E +RW+++R + + + I++L + +E +IL L YG
Sbjct: 420 DEQQRWEQHRAACLIEGQGGARTAEQMFSMIDALSESVDERGEEILGDLYDYG 472
>gi|221066347|ref|ZP_03542452.1| Exodeoxyribonuclease I [Comamonas testosteroni KF-1]
gi|220711370|gb|EED66738.1| Exodeoxyribonuclease I [Comamonas testosteroni KF-1]
Length = 479
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 208/473 (43%), Positives = 292/473 (61%), Gaps = 11/473 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF W+DYETFG R DRP QFA IRTD LN I P+M YC+PA D+LPDP++CLIT I
Sbjct: 4 TFFWHDYETFGAQPRYDRPAQFAGIRTDDQLNEIGEPVMWYCQPANDYLPDPQSCLITGI 63
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L G+ E++FA++IE + GT+ VGYNTI FDDEITRFMFWRNL +PY REW+
Sbjct: 64 TPQRALQEGVAEHEFAALIEAELAQAGTVGVGYNTIRFDDEITRFMFWRNLTDPYAREWQ 123
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N C RWDL++V++ Y L P GI WP K +G PSFKLE L+ N L H++AHDALSDVRA
Sbjct: 124 NGCGRWDLLDVVRMVYALRPDGIQWPTKEDGTPSFKLEDLARANGLLHEQAHDALSDVRA 183
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPI----ARPFFYITHMFSSKHSYISL 547
T+ LARLIR PRLF+F L KK L E+G P ARPF ++T M S +++
Sbjct: 184 TIALARLIREKQPRLFDFAFGLHKKDGALREMGLPATQEHARPFLHVTGMISPARGCLAV 243
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLN 604
MWP+ HP NKN +I W+L DP + I +R L ++ E + PI IH+N
Sbjct: 244 MWPLATHPTNKNEVICWDLAADPTELSGISIEDLRLRLFTRQAELPEGVSRLPIKSIHVN 303
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL 664
+SP+V+ +LK LS + ++ D+ A ++ A + + + WK +F + L
Sbjct: 304 KSPMVVGSLKTLSPAMAEKWGVDMELAMRHAAMARDLPDMSAQWKAVF----TREAGEPL 359
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
+ D++LY F+ +D +L ++ +SP++L+ F++ +L EL++ YRARNF +TL
Sbjct: 360 DADQDLYGGFVGNEDRRRLERIKRLSPQELALDKTGFDDARLTELVWRYRARNFPQTLDA 419
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYG 777
E +RW+++R + + + I+SL + A+E +IL L Y
Sbjct: 420 GEQQRWEQHRAACLIEGQGGARTAEQMFAMIDSLSEAADERAEEILGELYDYA 472
>gi|264679055|ref|YP_003278962.1| exonuclease-like protein [Comamonas testosteroni CNB-2]
gi|262209568|gb|ACY33666.1| Exonuclease-like protein [Comamonas testosteroni CNB-2]
Length = 479
Score = 454 bits (1169), Expect = e-124, Method: Compositional matrix adjust.
Identities = 208/473 (43%), Positives = 292/473 (61%), Gaps = 11/473 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF W+DYETFG R DRP QFA IRTD LN I P+M YC+PA D+LPDP++CLIT I
Sbjct: 4 TFFWHDYETFGAQPRYDRPAQFAGIRTDDQLNEIGEPVMWYCQPANDYLPDPQSCLITGI 63
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L G+ E++FA++IE + GT+ VGYNTI FDDEITRFMFWRNLI+PY REW+
Sbjct: 64 TPQRALEEGVAEHEFAALIEAELAQAGTVGVGYNTIRFDDEITRFMFWRNLIDPYAREWQ 123
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N C RWDL++V++ Y L P GI WP K +G PSF+LE L+ N L H++AHDALSDVRA
Sbjct: 124 NGCGRWDLLDVVRMVYALRPEGIQWPTKEDGTPSFRLEDLARANGLLHEQAHDALSDVRA 183
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPI----ARPFFYITHMFSSKHSYISL 547
T+ LARLIR PRLF+F L KK L E+G P ARPF ++T M S + +
Sbjct: 184 TIALARLIREKQPRLFDFAFGLHKKDGALREMGLPATQEHARPFLHVTGMISPARGCLGV 243
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLN 604
MWP+ HP NKN +I W+L DP + I ++R L ++ E + PI IH+N
Sbjct: 244 MWPLATHPTNKNEVICWDLAADPAELSGISIEELRLRLFTRQAELPEGVTRLPIKSIHVN 303
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL 664
+SP+V+ +LK LS + ++ D+ A ++ A + + + WK +F + L
Sbjct: 304 KSPMVVGSLKTLSPAMAEKWGVDMELAMQHAAIARDLPDMSAQWKAVF----TREAGEPL 359
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
+ D++LY F+ +D +L ++ +SP++L+ F++ +L EL + YRARNF +TL
Sbjct: 360 DADQDLYGGFVGNEDRRRLERIKRLSPQELALDKTGFDDARLTELAWRYRARNFPQTLDA 419
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYG 777
EL RW+++R + + + I++L + +E +IL L YG
Sbjct: 420 GELLRWEQHRAACLIEGQGGARTAEQMFTMIDALSESVDERGEEILGDLYDYG 472
>gi|418531163|ref|ZP_13097080.1| exonuclease I [Comamonas testosteroni ATCC 11996]
gi|371451665|gb|EHN64700.1| exonuclease I [Comamonas testosteroni ATCC 11996]
Length = 479
Score = 454 bits (1167), Expect = e-124, Method: Compositional matrix adjust.
Identities = 207/473 (43%), Positives = 292/473 (61%), Gaps = 11/473 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF W+DYETFG R DRP QFA IRTD LN I P+M YC+PA D+LPDP++CLIT I
Sbjct: 4 TFFWHDYETFGAQPRYDRPAQFAGIRTDDQLNEIGEPVMWYCQPANDYLPDPQSCLITGI 63
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L G+ E++FA++IE + GT+ VGYNTI FDDEITRFMFWRNL +PY REW+
Sbjct: 64 TPQRALQQGVAEHEFAALIEAELAQAGTVGVGYNTIRFDDEITRFMFWRNLTDPYAREWQ 123
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N C RWDL++V++ Y L P GI WP K +G PSFKLE L+ N L H++AHDALSDVRA
Sbjct: 124 NGCGRWDLLDVVRMVYALRPDGIHWPTKEDGTPSFKLEDLARANGLLHEQAHDALSDVRA 183
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPI----ARPFFYITHMFSSKHSYISL 547
T+ LARLIR PRLF+F L KK L E+G P ARPF ++T M S +++
Sbjct: 184 TIALARLIREKQPRLFDFAFGLHKKDGALREMGLPATQEHARPFLHVTGMISPARGCLAV 243
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLN 604
MWP+ HP NKN +I W+L DP + I +R L ++ E + PI IH+N
Sbjct: 244 MWPLATHPTNKNEVICWDLAADPSELSGISIEDLRLRLFTRQAELPEGVSRLPIKSIHVN 303
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL 664
+SP+V+ +LK LS + ++ D+ A ++ A + + + WK +F + L
Sbjct: 304 KSPMVVGSLKTLSPAMAEKWGVDMELAMQHAAIARDLPDMSAQWKAVF----TREAGEPL 359
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
+ D++LY F+ +D +L ++ +SP++L+ F++ +L EL++ YRARNF +TL
Sbjct: 360 DADQDLYGGFVGNEDRRRLERIKRLSPQELALDKTGFDDARLTELVWRYRARNFPQTLDA 419
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYG 777
E +RW+++R + + + I++L + A+E +IL L Y
Sbjct: 420 GEQQRWEQHRAACLIEGQGGARTAEQMFAMIDTLSETADERAEEILGELYDYA 472
>gi|187930471|ref|YP_001900958.1| exonuclease I [Ralstonia pickettii 12J]
gi|187727361|gb|ACD28526.1| Exodeoxyribonuclease I [Ralstonia pickettii 12J]
Length = 479
Score = 451 bits (1160), Expect = e-123, Method: Compositional matrix adjust.
Identities = 216/476 (45%), Positives = 299/476 (62%), Gaps = 16/476 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFLW+DYETFG RRDRP QFA IRTD LN I P+ L+C+P+ D+LPDP +CLIT I
Sbjct: 6 TFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPVSCLITGI 65
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C GIPEY+FA IE+ PGTI VGYNTI FDDE+TR +FWRNLI+PY REW+
Sbjct: 66 TPQQCARQGIPEYRFAQAIERELGTPGTIGVGYNTIRFDDEVTRHLFWRNLIDPYAREWQ 125
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N C RWDL++V++ + L P GI WP +G+PSFKLEHLS N L H+ AHDA+SDVRA
Sbjct: 126 NECGRWDLLDVVRTTWALRPEGIQWPTHEDGRPSFKLEHLSKANGLVHEAAHDAVSDVRA 185
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LARLIRN PRLF+F L+LRKK V+AEIG RP +I+ M+ + ++++WP+
Sbjct: 186 TIALARLIRNAQPRLFDFCLALRKKDRVVAEIG-DAPRPLLHISGMYGVERGCMAVVWPL 244
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN LI W+L DP + D+ IR+ + + E +PI IH+N+SPI
Sbjct: 245 GGHPANKNELIVWDLAFDPSELFHMDVATIRERMFTRTADLAEGTTRLPIKSIHINKSPI 304
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL--NI 666
VISN+K L R+ D ++ A + W++++ +LE ++
Sbjct: 305 VISNMKTLQPAQAERWGIDFAMIERHAAIAQGAPDMRETWRQVYA------RELEPIEDV 358
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
D+ LY F+ D L LR++S ++L+ ++ F + +L EL+F YRARNF +TL+ +E
Sbjct: 359 DQNLYGGFVGNDDRRLLNELRTLSGEQLARLHAEFADARLPELLFRYRARNFPDTLNEEE 418
Query: 727 LKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEH-DTK---ILNALLMYGK 778
+RW++ R R + ++ F ++ L +A E+ DT+ IL L Y +
Sbjct: 419 YERWEQLRAERLFEGRDGYMTFETFGERLQQLGAEAAENGDTRAQTILQDLYDYAQ 474
>gi|309780540|ref|ZP_07675287.1| exodeoxyribonuclease I [Ralstonia sp. 5_7_47FAA]
gi|404395139|ref|ZP_10986942.1| hypothetical protein HMPREF0989_01922 [Ralstonia sp. 5_2_56FAA]
gi|308920695|gb|EFP66345.1| exodeoxyribonuclease I [Ralstonia sp. 5_7_47FAA]
gi|348615436|gb|EGY64954.1| hypothetical protein HMPREF0989_01922 [Ralstonia sp. 5_2_56FAA]
Length = 479
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 215/476 (45%), Positives = 299/476 (62%), Gaps = 16/476 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFLW+DYETFG RRDRP QFA IRTD LN I P+ L+C+P+ D+LPDP +CLIT I
Sbjct: 6 TFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPVSCLITGI 65
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C GIPEY+FA IE+ PGTI VGYNTI FDDE+TR +FWRNLI+PY REW+
Sbjct: 66 TPQQCARQGIPEYRFAQAIERELGTPGTIGVGYNTIRFDDEVTRHLFWRNLIDPYAREWQ 125
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N C RWDL++V++ + L P GI WP +G+PSFKLEHLS N L H+ AHDA+SDVRA
Sbjct: 126 NECGRWDLLDVVRTTWALRPEGIQWPTHEDGRPSFKLEHLSKANGLVHEAAHDAVSDVRA 185
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LARLIRN PRLF+F L+LRKK V+AEIG RP +I+ M+ + ++++WP+
Sbjct: 186 TIALARLIRNAQPRLFDFCLALRKKDRVVAEIG-DAPRPLLHISGMYGVERGCMAVVWPL 244
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN LI W+L DP + D+ IR+ + + E +PI IH+N+SPI
Sbjct: 245 GGHPTNKNELIVWDLAFDPSELFDMDVATIRERMFTRTADLAEGTTRLPIKSIHINKSPI 304
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL--NI 666
VISN+K L R+ D ++ A + W++++ +LE ++
Sbjct: 305 VISNMKTLQPAQAERWGIDFATIERHAAIAQGAPDMRETWRQVYA------RELEAIEDV 358
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
D+ LY F+ +D L LR++S ++L+ ++ F + +L EL+F YRARNF +TL+ +E
Sbjct: 359 DQNLYGGFVGNEDRRLLNELRTLSGEQLARLHAEFADARLPELLFRYRARNFPDTLNEEE 418
Query: 727 LKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEH-DTK---ILNALLMYGK 778
+ W++ R R + ++ F ++ L +A E+ DT+ IL L Y +
Sbjct: 419 YELWEQLRAERLFEGRDGYMTFETFGERLQQLGAEAEENGDTRAQTILQDLYDYAQ 474
>gi|344172825|emb|CCA85482.1| exodeoxyribonuclease I [Ralstonia syzygii R24]
Length = 479
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 215/452 (47%), Positives = 286/452 (63%), Gaps = 12/452 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFLW+DYETFG RRDRP QFA IRTD LN I P+ L+C+P+ D+LPDP +CLIT I
Sbjct: 6 TFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGAPVELFCQPSNDWLPDPTSCLITGI 65
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ CL GIPEY+FA IE+ PGTI VGYNTI FDDEITR +FWRNLI+PY REW+
Sbjct: 66 TPQQCLKQGIPEYRFAQAIERELSTPGTIGVGYNTIRFDDEITRHLFWRNLIDPYAREWQ 125
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N C RWDL++V++ + L P GI WP GKPSFKLEHLS N L H+ AHDA+SDVRA
Sbjct: 126 NECGRWDLLDVVRTTWALRPEGIEWPVNGEGKPSFKLEHLSQANGLLHEAAHDAVSDVRA 185
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LARLIRN PRLF+F L+LRKK VLAEIG RP +I+ M+ ++++WP+
Sbjct: 186 TIALARLIRNAQPRLFDFCLTLRKKDRVLAEIG-DAPRPLIHISGMYGVDRGCMAVVWPL 244
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN LI W+L DP + D+ IR+ + + E +PI IH+N+SPI
Sbjct: 245 GWHPTNKNELIVWDLSFDPSELFHMDVAAIRERMFTRSADLAEGTTRLPIKSIHINKSPI 304
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL--NI 666
VI NLK L R+ DL + A + W++++ +LE ++
Sbjct: 305 VIGNLKTLQPAQAERWGVDLAVIEHHAGIAQGAPDLRETWRQVYA------RELEPIEDV 358
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
D+ LY F+S D L LR++S ++L+ ++ F + +L EL+F YRARNF +TL+ +E
Sbjct: 359 DQNLYGGFVSNDDRRTLNELRTLSGEQLARLHPDFADARLPELLFRYRARNFPDTLTEEE 418
Query: 727 LKRWKKYRISRFYNKKNNLYNINMFYLEIESL 758
++W++ R R + + + F IE L
Sbjct: 419 YEQWEQLRAERLFEGREGYLTFDAFGERIEQL 450
>gi|241664639|ref|YP_002982999.1| exonuclease I [Ralstonia pickettii 12D]
gi|240866666|gb|ACS64327.1| Exodeoxyribonuclease I [Ralstonia pickettii 12D]
Length = 479
Score = 448 bits (1153), Expect = e-122, Method: Compositional matrix adjust.
Identities = 214/479 (44%), Positives = 298/479 (62%), Gaps = 16/479 (3%)
Query: 309 GNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLI 368
+FLW+DYETFG RRDRP QFA IRTD LN I P+ L+C+P+ D+LPDP +CLI
Sbjct: 3 ATPSFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPVSCLI 62
Query: 369 TKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYER 428
T ITPQ C GIPEY+FA IE+ PGTI VGYNTI FDDE+TR +FWRNLI+PY R
Sbjct: 63 TGITPQQCARQGIPEYRFAQAIERELGTPGTIGVGYNTIRFDDEVTRHLFWRNLIDPYAR 122
Query: 429 EWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSD 488
EW+N C RWDL++V++ + L P GI WP +G+PSFKLEHLS N L H+ AHDA+SD
Sbjct: 123 EWQNECGRWDLLDVVRTTWALRPEGIQWPTHEDGRPSFKLEHLSKANGLVHEAAHDAVSD 182
Query: 489 VRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLM 548
VRAT+ LARLIRN PRLF+F L+LRKK V AEIG RP +I+ M+ + ++++
Sbjct: 183 VRATIALARLIRNAQPRLFDFCLALRKKDRVAAEIG-DAPRPLLHISGMYGVERGCMAVV 241
Query: 549 WPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNR 605
WP+ HP NKN LI W+L DP + D+ IR+ + + E +PI IH+N+
Sbjct: 242 WPLGGHPTNKNELIVWDLAFDPSELFDMDVATIRERMFTRAADLAEGTTRLPIKSIHINK 301
Query: 606 SPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL- 664
SPIVISN+K L R+ D ++ A + W++++ +LE
Sbjct: 302 SPIVISNMKTLQPGQAERWGIDFATIERHAAIAQGAPDMRETWRQVYA------RELEPI 355
Query: 665 -NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
++D+ LY F+ +D L LR++S ++L+ ++ F + +L EL+F YRARNF +TL+
Sbjct: 356 EDVDQNLYGGFVGNEDRRLLNELRTLSGEQLARLHAEFADARLPELLFRYRARNFPDTLN 415
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEH-DTK---ILNALLMYGK 778
+E + W++ R R + ++ F ++ L +A E+ DT+ IL L Y +
Sbjct: 416 EEEYELWEQLRAERLFEGRDGYMTFETFGERLQQLGAEAEENGDTRAQTILQDLYDYAQ 474
>gi|299065319|emb|CBJ36488.1| exodeoxyribonuclease I [Ralstonia solanacearum CMR15]
Length = 477
Score = 447 bits (1150), Expect = e-122, Method: Compositional matrix adjust.
Identities = 212/477 (44%), Positives = 299/477 (62%), Gaps = 16/477 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFLW+DYETFG RRDRP QFA IRTD LN I P+ L+C+P+ D+LPDP +CLIT I
Sbjct: 4 TFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCRPSNDWLPDPVSCLITGI 63
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ CL GIPE++FA IE+ PGTI VGYN+I FDDE+TR +FWRNLI+PY REW+
Sbjct: 64 TPQQCLKTGIPEHRFAQAIERELATPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYAREWQ 123
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N C RWDL++V++ + L P G+ WP ++GKPSFKLEHLS N L H+ AHDALSDVRA
Sbjct: 124 NTCGRWDLLDVVRTTWALRPDGVEWPKNDDGKPSFKLEHLSQANGLQHEAAHDALSDVRA 183
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LAR +R PRLF+F +LRKK+ VLAEIG RP +I+ M+ ++++WP+
Sbjct: 184 TIALARRVRTAQPRLFDFCFALRKKERVLAEIG-DAPRPLIHISGMYGVDRGCMAVVWPL 242
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN LI W+L DP + D+ IR+ L + E +PI IH+N+SPI
Sbjct: 243 GWHPTNKNELIAWDLSFDPSELFHMDVAAIRERLFTRSADLTEGTTRLPIKSIHINKSPI 302
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL--NI 666
VI NLK L R+ D ++ A + W++++ +LE ++
Sbjct: 303 VIGNLKTLQPAQAERWGVDFAAIERHAGIAQGAPDLRETWRQVYA------RELEPIEDV 356
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
D+ LY F+ D L LR++S ++L+ ++ F + +L EL+ YRARNF +TL+ E
Sbjct: 357 DQNLYGGFVGNDDRRTLNELRTLSGEQLAQLHPDFADARLPELLLRYRARNFPDTLTEDE 416
Query: 727 LKRWKKYRISRFYNKKNNLYNINMFYLEIESL-LKKANEHDTK---ILNALLMYGKI 779
++W++ R R + ++ ++ + IE L + A++ D + IL+AL Y ++
Sbjct: 417 HEQWEQLRAERLFEGRDGYLTLDAYAERIEQLAAEAADKGDARAEGILSALYDYAEM 473
>gi|344168306|emb|CCA80578.1| exodeoxyribonuclease I (modular protein) [blood disease bacterium
R229]
Length = 753
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 206/452 (45%), Positives = 284/452 (62%), Gaps = 12/452 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFLW+DYETFG RRDRP QFA IRTD LN I P+ L+C+P+ D+LPDP +CLIT I
Sbjct: 280 TFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSSDWLPDPVSCLITGI 339
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C GIPE +FA IE+ PGTI VGYN+I FDDE+TR +FWRNLI+PY REW+
Sbjct: 340 TPQQCRRQGIPENRFAQAIERELAMPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYAREWQ 399
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N C RWDL++V++ + L P GI WP +GKPSFKLEHLS N L H+ AHDALSDVRA
Sbjct: 400 NECGRWDLLDVVRTTWALRPDGIEWPKNGDGKPSFKLEHLSQANGLLHEAAHDALSDVRA 459
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LARLIRN PRLF+F +LRKK+ VLAEIG RP +++ M+ + ++++WP+
Sbjct: 460 TIALARLIRNAQPRLFDFCFALRKKERVLAEIG-DAPRPLLHVSGMYGVERGCLAVVWPL 518
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN L+ W+L DP + IR+ L + E +P+ IH+N++PI
Sbjct: 519 GWHPTNKNELLVWDLACDPAELFDLGAEAIRERLFTRSAELAEGTTRLPVKSIHINKAPI 578
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLE--LNI 666
VI NLK L R+ D ++ A + W++++ +LE ++
Sbjct: 579 VIGNLKTLQPAQAERWGVDFATIERHAAVAQGAPDMRETWRQVY------ARELEPIADV 632
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
D+ LY F+S D L LR++S ++L+ ++ F + +L EL+F YRARNF +TL+ +E
Sbjct: 633 DQNLYGGFVSNDDRRTLNELRTLSGEQLARLHPDFADARLPELLFRYRARNFPDTLTEEE 692
Query: 727 LKRWKKYRISRFYNKKNNLYNINMFYLEIESL 758
++W++ R R + + + F IE L
Sbjct: 693 YEQWEQLRAERLFEGREGYLTFDAFGERIEQL 724
>gi|383757070|ref|YP_005436055.1| exodeoxyribonuclease I SbcB [Rubrivivax gelatinosus IL144]
gi|381377739|dbj|BAL94556.1| exodeoxyribonuclease I SbcB [Rubrivivax gelatinosus IL144]
Length = 480
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 205/471 (43%), Positives = 286/471 (60%), Gaps = 11/471 (2%)
Query: 309 GNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLI 368
+TF W+DYETFG RRDRP QFA IRTD LN I P M +C+P D LPDP +CL+
Sbjct: 2 AETTFFWHDYETFGRVPRRDRPAQFAGIRTDAELNEIGAPAMWFCQPPTDALPDPESCLL 61
Query: 369 TKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYER 428
T I PQ L G+ E +FAS IE PGTI VGYN+I FDDE+TRF+FWRNLI+PY R
Sbjct: 62 TGILPQQALAEGVAEREFASRIEAALAAPGTIGVGYNSIRFDDEVTRFLFWRNLIDPYAR 121
Query: 429 EWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSD 488
EW+N C RWDL++V++ + L P GI WP +G+PSFKLEHL+ N L+H+ AHDALSD
Sbjct: 122 EWQNGCGRWDLLDVVRCCWALRPEGIEWPKHEDGRPSFKLEHLTAANGLAHEAAHDALSD 181
Query: 489 VRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLM 548
VRAT+ LARLIR PRL++F L LR K V AEIG + RPF +++ M+ ++ ++++
Sbjct: 182 VRATIALARLIRQRQPRLWDFCLKLRHKDAVRAEIG--VGRPFLHLSGMYGVENGCMAIV 239
Query: 549 WPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSF----KEDIPISMIHLN 604
WP+ HP N+N LI W+L DP + D +R L K + +PI IHLN
Sbjct: 240 WPLAPHPTNRNELIVWDLAQDPAELASLDAETVRRRLYTKTEELAAAGETRLPIKTIHLN 299
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNN-TYIWKKIFLDYKINNSDLE 663
+SP+VI NLK L R+ DL A + + A+++ +W +F
Sbjct: 300 KSPVVIGNLKTLGPA-RERWGLDLERALVHAERAAALGRTLEPLWSLVFAKPAAGAP--- 355
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
+++DE+LY F+ +D +L LR + L++ F++ +L+EL+F YRARNF +TL
Sbjct: 356 VDVDEDLYGGFLGDEDRRQLQRLRGLDGAALASRRPAFDDPRLDELLFRYRARNFADTLD 415
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALL 774
+E +RW +R +R + + + I+ L + A E D + +LL
Sbjct: 416 AEERERWAAHRHARLIDGAGGALTLQAYAERIDELAEAAAERDDERAQSLL 466
>gi|375105398|ref|ZP_09751659.1| exonuclease I [Burkholderiales bacterium JOSHI_001]
gi|374666129|gb|EHR70914.1| exonuclease I [Burkholderiales bacterium JOSHI_001]
Length = 475
Score = 442 bits (1137), Expect = e-121, Method: Composition-based stats.
Identities = 203/471 (43%), Positives = 302/471 (64%), Gaps = 9/471 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F W+DYETFG RRDRP QFA +RTD LN I P+MLYC+PAPDFLPDP +CL+T I
Sbjct: 5 SFFWHDYETFGRLPRRDRPAQFAGVRTDANLNEIGAPVMLYCQPAPDFLPDPESCLLTGI 64
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
PQ CL G+ E+ FA IE KPGT+ VGYN+I FDDE+TRF+FWRNL++PY REW+
Sbjct: 65 LPQHCLAQGVAEHAFADAIEAQLAKPGTVGVGYNSIRFDDEVTRFLFWRNLMDPYAREWQ 124
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N C RWDL++V++ + L P GI WP ++GKPSFKLEHL+ N LSH+ AHDALSDVRA
Sbjct: 125 NQCGRWDLLDVVRCTWALRPEGIEWPQHDDGKPSFKLEHLTAANGLSHEAAHDALSDVRA 184
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+L++ PRL++F L LR+K V+ E+G + RPF +I+ M+ ++ ++L+WP+
Sbjct: 185 TIALAKLVKTRQPRLWDFCLKLRQKNAVVDEMG--VGRPFLHISGMYGAERGCMALVWPL 242
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLNRSPI 608
HP N+N +I W+L DP+ + +R+ L + E + PI IH+N+SPI
Sbjct: 243 APHPTNRNEVIVWDLAQDPQVLFELNAATVRERLFTRAEDLPEGVTRLPIKTIHINKSPI 302
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTY-IWKKIFLDYKINNSDLELNID 667
V++NLK+++ R+ +L K + + +W ++F + ++D
Sbjct: 303 VVANLKIVTPQTAQRFNLNLEQGLLRAKALEARGHTLAGLWPEVF---DRPAAPTPPDVD 359
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
E+LY F+ +D L LRS+SP++L+ + F + +L+E++F +RARNF +TL+ E
Sbjct: 360 EDLYGEFVGNEDRRVLQRLRSLSPQELAERHPAFTDPRLDEMLFRFRARNFPDTLNGDEQ 419
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGK 778
+RW R +R + + ++ F+ I++L + A+E +L AL Y +
Sbjct: 420 QRWHALRHARLHEGAHGGLSLQAFFDGIDTLGENADERGQDLLGALYDYAE 470
>gi|421890248|ref|ZP_16321166.1| exodeoxyribonuclease I [Ralstonia solanacearum K60-1]
gi|378964403|emb|CCF97914.1| exodeoxyribonuclease I [Ralstonia solanacearum K60-1]
Length = 489
Score = 441 bits (1133), Expect = e-120, Method: Compositional matrix adjust.
Identities = 207/475 (43%), Positives = 298/475 (62%), Gaps = 12/475 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFLW+DYETFG RRDRP QFA IRTD LN I P+ L+C+P+ D+LPDP +CLIT I
Sbjct: 16 TFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSSDWLPDPVSCLITGI 75
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C GIPEY+FA IE+ PGTI VGYN+I FDDE+TR +FWRNLI+PY REW+
Sbjct: 76 TPQQCRRQGIPEYRFAQAIERELATPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYAREWQ 135
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N C RWDL++V++ + L P G+ WP +GKPSFKLEHLS N L H+ AHDALSDVRA
Sbjct: 136 NECGRWDLLDVVRTTWALRPDGVEWPKNGDGKPSFKLEHLSQANGLLHEAAHDALSDVRA 195
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LAR +R+ PRLF+F +LRKK+ VLAEIG RP +++ M+ + ++++WP+
Sbjct: 196 TIALARRVRDAQPRLFDFCFALRKKERVLAEIG-ETPRPLLHVSGMYGVERGCMAVVWPL 254
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN L+ W+L DP + ++ IR+ L + E +P+ IH+N++PI
Sbjct: 255 GWHPTNKNELLVWDLACDPAELFDLGVDTIRERLFTRSAELAEGTTRLPVKSIHINKAPI 314
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
VI NLK L R+ D ++ A + W++++ D ++D+
Sbjct: 315 VIGNLKTLQPAQAERWGVDFAAIERHAAAAQGAPDMRETWRQVY----ARELDPIEDVDQ 370
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
LY F++ D L LR++S ++L+ ++ F + +L EL+F YRARNF +TL+ E +
Sbjct: 371 NLYGGFVANGDRRTLNELRTLSGEQLARLHPDFADARLPELLFRYRARNFPDTLTEDESE 430
Query: 729 RWKKYRISRFYNKKNNLYNINMFYLEIESL-LKKANEHDTK---ILNALLMYGKI 779
+W++ R R + ++ ++ + IE L + A++ D + IL AL Y ++
Sbjct: 431 QWEQLRAERLFEGRDGYLTLDGYTERIEQLAAEAADKGDARAEGILAALYDYAEM 485
>gi|300690052|ref|YP_003751047.1| exodeoxyribonuclease I [Ralstonia solanacearum PSI07]
gi|299077112|emb|CBJ49735.1| exodeoxyribonuclease I [Ralstonia solanacearum PSI07]
Length = 489
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 206/452 (45%), Positives = 284/452 (62%), Gaps = 12/452 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFLW+DYETFG RRDRP QFA IRTD LN I P+ L+C+P+ D+LPDP +CLIT I
Sbjct: 16 TFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSSDWLPDPVSCLITGI 75
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C GIPE +FA IE+ PGTI VGYN+I FDDE+TR +FWRNLI+PY REW+
Sbjct: 76 TPQQCRRQGIPENRFAQAIERELAMPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYAREWQ 135
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N C RWDL++V++ + L P GI WP +GKPSFKLEHLS N L H+ AHDALSDVRA
Sbjct: 136 NECGRWDLLDVVRTTWALRPDGIEWPKNGDGKPSFKLEHLSQANGLLHEAAHDALSDVRA 195
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LARLIRN PRLF+F +LRKK+ VLAEIG RP +++ M+ + ++++WP+
Sbjct: 196 TIALARLIRNAQPRLFDFCFALRKKERVLAEIG-DAPRPLLHVSGMYGVERGCLAVVWPL 254
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN L+ W+L DP + IR+ L + E +P+ IH+N++PI
Sbjct: 255 GWHPTNKNELLVWDLACDPAELFDLGAEAIRERLFTRSAELAEGTARLPVKSIHINKAPI 314
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLE--LNI 666
VI NLK L R+ D ++ A + W++++ +LE ++
Sbjct: 315 VIGNLKTLQPAQAERWGVDFATIERHAAVAQGAPDMRETWRQVYA------RELEPIADV 368
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
D+ LY F+S D L LR++S ++L+ ++ F + +L EL+F YRARNF +TL+ +E
Sbjct: 369 DQNLYGGFVSNDDRRTLNELRTLSGEQLARLHPDFADARLPELLFRYRARNFPDTLTEEE 428
Query: 727 LKRWKKYRISRFYNKKNNLYNINMFYLEIESL 758
++W++ R R + + + F IE L
Sbjct: 429 YEQWEQLRAERLFEGREGYLTFDAFGERIEQL 460
>gi|421896006|ref|ZP_16326405.1| exodeoxyribonucleaseIprotein [Ralstonia solanacearum MolK2]
gi|206587171|emb|CAQ17755.1| exodeoxyribonucleaseIprotein [Ralstonia solanacearum MolK2]
Length = 489
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 205/466 (43%), Positives = 289/466 (62%), Gaps = 9/466 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFLW+DYETFG RRDRP QFA IRTD LN I P+ L+C+P+ D+LPDP +CLIT I
Sbjct: 16 TFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSSDWLPDPASCLITGI 75
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C GIPEY+FA IE+ PGTI VGYN+I FDDE+TR +FWRNLI+PY REW+
Sbjct: 76 TPQQCRRQGIPEYRFAQAIERELATPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYAREWQ 135
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N C RWDL++V++ + L P G+ WP +GKPSFKLEHLS N L H+ AHDALSDVRA
Sbjct: 136 NECGRWDLLDVVRTTWALRPDGVEWPKNGDGKPSFKLEHLSKANGLLHEAAHDALSDVRA 195
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LAR +R+ PRLF+F +LRKK+ VLAEIG RP +++ M+ + ++++WP+
Sbjct: 196 TIALARRVRDAQPRLFDFCFALRKKERVLAEIG-EAPRPLLHVSGMYGVERGCMAVVWPL 254
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN L+ W+L DP + ++ IR+ L + E +P+ IH+N++PI
Sbjct: 255 GWHPTNKNELLVWDLACDPAELFDLGVDTIRERLFTRSAELAEGTTRLPVKSIHINKAPI 314
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
VI NLK L R+ D ++ A + W++++ D ++D+
Sbjct: 315 VIGNLKTLQPAQAERWGVDFAAIERHAAAAQGAPDMRETWRQVY----ARELDPIEDVDQ 370
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
LY F++ D L LR++S ++L+ ++ F + +L EL+F YRARNF +TL+ E +
Sbjct: 371 NLYGGFVANGDRRTLNELRTLSGEQLARLHPDFADARLSELLFRYRARNFPDTLTEDEYE 430
Query: 729 RWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEH-DTKILNAL 773
+W++ R R + F ++ L +A E DT+ N L
Sbjct: 431 QWEQLRAERLFEGSGGYLTFEAFGERLQQLGAEAAESGDTRAQNIL 476
>gi|83746387|ref|ZP_00943439.1| Exodeoxyribonuclease I [Ralstonia solanacearum UW551]
gi|207744660|ref|YP_002261052.1| exodeoxyribonucleaseIprotein [Ralstonia solanacearum IPO1609]
gi|83726928|gb|EAP74054.1| Exodeoxyribonuclease I [Ralstonia solanacearum UW551]
gi|206596067|emb|CAQ62994.1| exodeoxyribonucleaseIprotein [Ralstonia solanacearum IPO1609]
Length = 489
Score = 438 bits (1127), Expect = e-119, Method: Compositional matrix adjust.
Identities = 204/466 (43%), Positives = 289/466 (62%), Gaps = 9/466 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFLW+DYETFG RRDRP QFA IRTD LN I P+ L+C+P+ D+LPDP +CLIT I
Sbjct: 16 TFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSSDWLPDPASCLITGI 75
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C GIPEY+FA IE+ PGTI VGYN+I FDDE+TR +FWRNLI+PY REW+
Sbjct: 76 TPQQCRRQGIPEYRFAQAIERELATPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYAREWQ 135
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N C RWDL++V++ + L P G+ WP +GKPSFKLEHLS N L H+ AHDALSDVRA
Sbjct: 136 NECGRWDLLDVVRTTWALRPDGVEWPKNGDGKPSFKLEHLSKANGLLHEAAHDALSDVRA 195
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LAR +R+ PRLF+F +LRKK+ VLAEIG RP +++ M+ + ++++WP+
Sbjct: 196 TIALARRVRDAQPRLFDFCFALRKKERVLAEIG-ETPRPLLHVSGMYGVERGCMAVVWPL 254
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN L+ W+L DP + ++ IR+ L + E +P+ IH+N++PI
Sbjct: 255 GWHPTNKNELLVWDLACDPAELFDLGVDTIRERLFTRSAELAEGTTRLPVKSIHINKAPI 314
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
VI NLK L R+ D ++ A + W++++ + D ++D+
Sbjct: 315 VIGNLKTLQPAQAERWGVDFAAIERHAAAAQGAPDMRETWRQVY----VRELDPIEDVDQ 370
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
LY F++ D L LR++S ++L+ ++ F + +L EL+F YRARNF +TL+ E +
Sbjct: 371 NLYGGFVANGDRRTLNELRTLSGEQLARLHPDFADARLPELLFRYRARNFPDTLTEDEYE 430
Query: 729 RWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEH-DTKILNAL 773
+W++ R R + F ++ L +A E D + N L
Sbjct: 431 QWEQLRAERLFEGSGGYLTFEAFGERLQQLGAEAAESGDARAQNIL 476
>gi|121607268|ref|YP_995075.1| exonuclease I [Verminephrobacter eiseniae EF01-2]
gi|121551908|gb|ABM56057.1| Exodeoxyribonuclease I subunit C [Verminephrobacter eiseniae
EF01-2]
Length = 481
Score = 438 bits (1126), Expect = e-119, Method: Compositional matrix adjust.
Identities = 210/475 (44%), Positives = 298/475 (62%), Gaps = 12/475 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFLW+DYETFG + R DRP QFAAIRTD L+ I P+ML+C+PA D+LPDP +CL+T I
Sbjct: 5 TFLWHDYETFGTDTRCDRPAQFAAIRTDAELHAIGEPLMLHCQPANDYLPDPASCLLTGI 64
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C +G+PE++FA+ IE +PGTI VGYNT+ FDDEITRFMFWRNLI+PY REWK
Sbjct: 65 TPQHCCAHGLPEHQFAARIEAELARPGTIGVGYNTLRFDDEITRFMFWRNLIDPYAREWK 124
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNG-KPSFKLEHLSFVNNLSHKKAHDALSDVR 490
N C RWDL++V++ Y L P GI WP +G PSF+LE L N L H+ AHDALSDVR
Sbjct: 125 NQCGRWDLLDVVRMTYALRPDGIHWPRHEDGAAPSFRLEDLCRANGLLHEAAHDALSDVR 184
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEI----GWPIARPFFYITHMFSSKHSYIS 546
AT+ LARLIR +N LF+F L L KK V AE+ G ARPF +++ MF ++ ++
Sbjct: 185 ATIALARLIRQHNRPLFDFALGLHKKDRVAAELRLSGGAGTARPFLHVSGMFPAERGCLA 244
Query: 547 LMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHL 603
+MWP+ HP+NKN LI W+L HDP ++++R + + ++ E + P+ IHL
Sbjct: 245 VMWPLAGHPVNKNELIAWDLAHDPAALATLGVDEMRLRMFTRTDALPEGVTRLPVKTIHL 304
Query: 604 NRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLE 663
NRSP+V+ N+ L+ L R+ DL A ++ + A ++ + +W +F S+
Sbjct: 305 NRSPMVVGNVNTLTPALARRWGIDLAQAAQHAQAARALPDMGRVWAAVF----ARPSEPA 360
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
++D++LY F+ +D L LR+ + F++ +L EL + YRARNF TL+
Sbjct: 361 PDVDQDLYCGFVGDRDRRLLDDLRASAAGMNGKARVHFDDPRLVELFWRYRARNFPATLA 420
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGK 778
+E RW+ + +R ++ + F+ I+ L + A+E IL AL Y +
Sbjct: 421 PEEAGRWQAHCAARLFHGAGGARTVGQFHARIDELSETADERGQGILGALYDYAE 475
>gi|161621731|ref|NP_521246.2| exonuclease I [Ralstonia solanacearum GMI1000]
Length = 477
Score = 437 bits (1124), Expect = e-119, Method: Compositional matrix adjust.
Identities = 203/452 (44%), Positives = 284/452 (62%), Gaps = 12/452 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF W+DYETFG RRDRP QFA IRTD LN I P+ L+C+P+ D+LPDP +CLIT I
Sbjct: 4 TFFWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPMSCLITGI 63
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C GIPE++FA IE+ PGTI VGYN+I FDDEITR +FWRNLI+PY REW+
Sbjct: 64 TPQQCRRQGIPEHRFAQAIERELATPGTIGVGYNSIRFDDEITRHLFWRNLIDPYAREWQ 123
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N C RWDL++V++ + L P G+ WP +GKPSFKLEHLS N L H+ AHDALSDVRA
Sbjct: 124 NTCGRWDLLDVVRTTWALRPDGVEWPKNGDGKPSFKLEHLSQANGLQHEAAHDALSDVRA 183
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LAR +R PRLF+F +LRKK+ VLAEIG +RP +++ M+ + ++++WP+
Sbjct: 184 TIALARRVRAAQPRLFDFCFALRKKERVLAEIG-DASRPLLHVSGMYGVERGCLAVVWPL 242
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN L+ W+L DP + ++ IR+ L + E +PI IH+N+SPI
Sbjct: 243 GWHPTNKNELLVWDLACDPAELFDLGVDTIRERLFTRSADLTEGTTRLPIKSIHINKSPI 302
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL--NI 666
VI NLK L R+ D ++ A + W++++ +LE ++
Sbjct: 303 VIGNLKTLQPAQAERWGIDFAVIERHAGIAQGAPDLRETWRQVYA------RELEPIEDV 356
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
D+ LY F+ D L LR++S ++L+ ++ F + +L EL+F YRARNF +TL+ +E
Sbjct: 357 DQNLYGGFVGNDDRRTLNELRTLSGEQLAQLHPDFADARLPELLFRYRARNFPDTLTEEE 416
Query: 727 LKRWKKYRISRFYNKKNNLYNINMFYLEIESL 758
++W++ R R + + + F IE L
Sbjct: 417 YEQWEQLRAERLFEGREGYLTFDAFGERIEQL 448
>gi|17430149|emb|CAD16834.1| putative exodeoxyribonucleaseIprotein [Ralstonia solanacearum
GMI1000]
Length = 489
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 203/452 (44%), Positives = 284/452 (62%), Gaps = 12/452 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF W+DYETFG RRDRP QFA IRTD LN I P+ L+C+P+ D+LPDP +CLIT I
Sbjct: 16 TFFWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSNDWLPDPMSCLITGI 75
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C GIPE++FA IE+ PGTI VGYN+I FDDEITR +FWRNLI+PY REW+
Sbjct: 76 TPQQCRRQGIPEHRFAQAIERELATPGTIGVGYNSIRFDDEITRHLFWRNLIDPYAREWQ 135
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N C RWDL++V++ + L P G+ WP +GKPSFKLEHLS N L H+ AHDALSDVRA
Sbjct: 136 NTCGRWDLLDVVRTTWALRPDGVEWPKNGDGKPSFKLEHLSQANGLQHEAAHDALSDVRA 195
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LAR +R PRLF+F +LRKK+ VLAEIG +RP +++ M+ + ++++WP+
Sbjct: 196 TIALARRVRAAQPRLFDFCFALRKKERVLAEIG-DASRPLLHVSGMYGVERGCLAVVWPL 254
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN L+ W+L DP + ++ IR+ L + E +PI IH+N+SPI
Sbjct: 255 GWHPTNKNELLVWDLACDPAELFDLGVDTIRERLFTRSADLTEGTTRLPIKSIHINKSPI 314
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL--NI 666
VI NLK L R+ D ++ A + W++++ +LE ++
Sbjct: 315 VIGNLKTLQPAQAERWGIDFAVIERHAGIAQGAPDLRETWRQVYA------RELEPIEDV 368
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
D+ LY F+ D L LR++S ++L+ ++ F + +L EL+F YRARNF +TL+ +E
Sbjct: 369 DQNLYGGFVGNDDRRTLNELRTLSGEQLAQLHPDFADARLPELLFRYRARNFPDTLTEEE 428
Query: 727 LKRWKKYRISRFYNKKNNLYNINMFYLEIESL 758
++W++ R R + + + F IE L
Sbjct: 429 YEQWEQLRAERLFEGREGYLTFDAFGERIEQL 460
>gi|300702669|ref|YP_003744269.1| exodeoxyribonuclease I [Ralstonia solanacearum CFBP2957]
gi|299070330|emb|CBJ41622.1| exodeoxyribonuclease I [Ralstonia solanacearum CFBP2957]
Length = 489
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 204/466 (43%), Positives = 288/466 (61%), Gaps = 9/466 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFLW+DYETFG RRDRP QFA IRTD LN I P+ L+C+P+ D+LPDP +CLIT I
Sbjct: 16 TFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSSDWLPDPVSCLITGI 75
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C GIPEY+FA IE+ PGTI VGYN+I FDDE+TR +FWRNLI+PY REW+
Sbjct: 76 TPQQCRRQGIPEYRFAQAIERELATPGTIGVGYNSIRFDDEVTRHLFWRNLIDPYAREWQ 135
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N C RWDL++V++ + L P G+ WP +GKPSFKLEHLS N L H+ AHDALSDVRA
Sbjct: 136 NECGRWDLLDVVRTTWALRPDGVEWPKNGDGKPSFKLEHLSQANGLLHEAAHDALSDVRA 195
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LAR +R+ PRLF+F +LRKK+ VLAEIG RP +++ M+ + ++++WP+
Sbjct: 196 TIALARRVRDAQPRLFDFCFALRKKERVLAEIG-ETPRPLLHVSGMYGVERGCMAVVWPL 254
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN L+ W+L DP + ++ IR+ L + E +P+ IH+N++PI
Sbjct: 255 GWHPTNKNELLVWDLACDPAELFDLGVDTIRERLFTRSAELAEGTTRLPVKSIHINKAPI 314
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
VI NLK L R+ D ++ A + W++++ D ++D+
Sbjct: 315 VIGNLKTLQPAQAERWGVDFAAIERHAAAAQGAPDMRETWRQVY----ARELDPIEDVDQ 370
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
LY F++ D L LR++S ++L+ ++ F + +L EL+F YRARNF +TL+ E +
Sbjct: 371 NLYGGFVANGDRRTLNELRTLSGEQLARLHPDFADARLPELLFRYRARNFPDTLAEDEYE 430
Query: 729 RWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEH-DTKILNAL 773
+W++ R R + F ++ L +A E D + N L
Sbjct: 431 QWEQLRAERLFEGGGGYLTFEAFGERLQQLGAEAAESGDARAQNIL 476
>gi|386332028|ref|YP_006028197.1| exodeoxyribonucleaseIprotein [Ralstonia solanacearum Po82]
gi|334194476|gb|AEG67661.1| exodeoxyribonucleaseIprotein [Ralstonia solanacearum Po82]
Length = 489
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 204/466 (43%), Positives = 287/466 (61%), Gaps = 9/466 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFLW+DYETFG RRDRP QFA IRTD LN I P+ L+C+P+ D+LPDP +CLIT I
Sbjct: 16 TFLWHDYETFGAVPRRDRPAQFAGIRTDAELNEIGEPVELFCQPSSDWLPDPTSCLITGI 75
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C GIPEY+FA IE+ PGTI VGYN+I FDDE+TR +FWRNLI PY REW+
Sbjct: 76 TPQQCRRQGIPEYRFAQAIERELATPGTIGVGYNSIRFDDEVTRHLFWRNLIGPYAREWQ 135
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N C RWDL++V++ + L P G+ WP +GKPSFKLEHLS N L H+ AHDALSDVRA
Sbjct: 136 NECGRWDLLDVVRTTWALRPDGVEWPKNGDGKPSFKLEHLSKANGLLHEAAHDALSDVRA 195
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LAR +R+ PRLF+F +LRKK+ VLAEIG RP +++ M+ + ++++WP+
Sbjct: 196 TIALARRVRDAQPRLFDFCFALRKKERVLAEIG-ETPRPLLHVSGMYGVERGCMAVVWPL 254
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN L+ W+L DP + ++ IR+ L + E +P+ IH+N++PI
Sbjct: 255 GWHPTNKNELLVWDLACDPAELFDLGVDTIRERLFTRSVELAEGTTRLPVKSIHINKAPI 314
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
VI NLK L R+ D ++ A + W++++ D ++D+
Sbjct: 315 VIGNLKTLQPAQAERWGVDFAAIERHAAAAQGAPDMRETWRQVY----ARELDPIEDVDQ 370
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
LY F++ D L LR++S ++L+ ++ F + +L EL+F YRARNF +TL+ E +
Sbjct: 371 NLYGGFVANGDRRTLNELRALSGEQLARLHPDFADARLPELLFRYRARNFPDTLTEDEYE 430
Query: 729 RWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEH-DTKILNAL 773
+W++ R R + F ++ L +A E D + N L
Sbjct: 431 QWEQLRAERLFEGSGGYLTFEAFGERLQQLGAEAAESGDARAQNIL 476
>gi|224826521|ref|ZP_03699622.1| Exodeoxyribonuclease I [Pseudogulbenkiania ferrooxidans 2002]
gi|224601122|gb|EEG07304.1| Exodeoxyribonuclease I [Pseudogulbenkiania ferrooxidans 2002]
Length = 475
Score = 436 bits (1120), Expect = e-119, Method: Composition-based stats.
Identities = 196/430 (45%), Positives = 280/430 (65%), Gaps = 7/430 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF W+DYETFG R+DRP QFA IRTD LN I P+MLYC+P+PD+LP P ACL+T I
Sbjct: 5 TFFWHDYETFGTVPRQDRPAQFAGIRTDAELNEIGEPVMLYCRPSPDYLPSPEACLLTGI 64
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C +G+ E++FA +IE+ PGTI VGYN++ FDDE+TRF+FWRNLI+PY REW+
Sbjct: 65 TPQLCQQHGVAEHEFAGVIERELATPGTIGVGYNSLRFDDEVTRFLFWRNLIDPYAREWQ 124
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N C RWDL+++++A Y L P GI WP + G PSFKLEHLS N L+H+ AHDALSDVRA
Sbjct: 125 NQCGRWDLLDLVRATYALRPEGIEWPKHDTGLPSFKLEHLSAANGLAHEAAHDALSDVRA 184
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LARLIR P+LF F L LRKK V ++ RP +++ M+ ++ ++++WP+
Sbjct: 185 TIALARLIRQRQPKLFEFYLGLRKKDAVRHQLSLHAPRPLLHVSGMYGAERGNLAVVWPL 244
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLNRSPI 608
HP NKN +I W+L +DP + + IR L + + + + PI IH+N+SP
Sbjct: 245 AEHPSNKNEVIVWDLAYDPAELRGLGPDTIRQRLFSRSDELPDGVSRLPIKTIHINKSPF 304
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
V+SNL+VLS + DL+ ++ + A ++ N T +W+K++ + ++DE
Sbjct: 305 VVSNLRVLSDERADHWGIDLDAVTRHAETAQALPNLTSVWRKVYQ----RETGAPADVDE 360
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
LY F+S D +L LR++S +L+ F++ +L E +F YRARNF +LS E +
Sbjct: 361 NLYGGFVSNNDRRELTRLRTLSAVQLAGERPAFDDAQLSEQLFRYRARNFPASLSAAEQE 420
Query: 729 RWKKYRISRF 738
RW+ + S+
Sbjct: 421 RWQSWCRSKL 430
>gi|347539106|ref|YP_004846531.1| exodeoxyribonuclease I [Pseudogulbenkiania sp. NH8B]
gi|345642284|dbj|BAK76117.1| exodeoxyribonuclease I [Pseudogulbenkiania sp. NH8B]
Length = 475
Score = 432 bits (1112), Expect = e-118, Method: Composition-based stats.
Identities = 196/430 (45%), Positives = 279/430 (64%), Gaps = 7/430 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF W+DYETFG R+DRP QFA IRTD LN I P+MLYC+P+PD+LP P ACL+T I
Sbjct: 5 TFFWHDYETFGTVPRQDRPAQFAGIRTDAELNEIGEPVMLYCRPSPDYLPSPEACLLTGI 64
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C +G+ E++FA +IE+ GTI VGYN++ FDDE+TRF+FWRNLI+PY REW+
Sbjct: 65 TPQLCQQHGVAEHEFAGVIERELATTGTIGVGYNSLRFDDEVTRFLFWRNLIDPYAREWQ 124
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N C RWDL+++++A Y L P GI WP + G PSFKLEHLS N L+H+ AHDALSDVRA
Sbjct: 125 NQCGRWDLLDLVRATYALRPEGIEWPKHDTGLPSFKLEHLSAANGLAHEAAHDALSDVRA 184
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LARLIR P+LF F L LRKK V ++ RP +++ M+ ++ ++++WP+
Sbjct: 185 TIALARLIRQRQPKLFEFYLGLRKKDAVRHQLSLHAPRPLLHVSGMYGAERGNLAVVWPL 244
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLNRSPI 608
HP NKN +I W+L +DP + + IR L + + E + PI IH+N+SP
Sbjct: 245 AEHPSNKNEVIVWDLAYDPAELRGLGPDTIRQRLFSRSDELPEGVSRLPIKTIHINKSPF 304
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
V+SNL+VLS + DL+ ++ + A ++ N T +W+K++ + ++DE
Sbjct: 305 VVSNLRVLSDERADHWGIDLDAINRHAETAQALPNLTSVWRKVYQ----RETGAPADVDE 360
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
LY F+S D +L LR++S +L+ F++ +L E +F YRARNF +LS E +
Sbjct: 361 NLYGGFVSNNDRRELTRLRTLSAVQLAGERPAFDDAQLSEQLFRYRARNFPASLSAAERE 420
Query: 729 RWKKYRISRF 738
RW+ + S+
Sbjct: 421 RWQNWCRSKL 430
>gi|332526171|ref|ZP_08402306.1| exonuclease I [Rubrivivax benzoatilyticus JA2]
gi|332110011|gb|EGJ10639.1| exonuclease I [Rubrivivax benzoatilyticus JA2]
Length = 492
Score = 431 bits (1108), Expect = e-117, Method: Compositional matrix adjust.
Identities = 200/471 (42%), Positives = 286/471 (60%), Gaps = 11/471 (2%)
Query: 309 GNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLI 368
+TF W+DYETFG RRDRP QFA IRTD LN I P M +C+P D LPDP +CL+
Sbjct: 15 AETTFFWHDYETFGRVPRRDRPAQFAGIRTDAELNEIGAPAMWFCQPPTDTLPDPESCLL 74
Query: 369 TKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYER 428
T I PQ L G+ E +FA+ IE PGTI VGYN+I FDDE+TRF+FWRNLI+PY R
Sbjct: 75 TGILPQQALAEGVAEREFAARIEAALAAPGTIGVGYNSIRFDDEVTRFLFWRNLIDPYAR 134
Query: 429 EWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSD 488
EW+N C RWDL++V++ + L P GI WP +G+PSFKLEHL+ N L+H+ AHDALSD
Sbjct: 135 EWQNGCGRWDLLDVVRCCWALRPEGIEWPKHEDGRPSFKLEHLTAANGLAHEAAHDALSD 194
Query: 489 VRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLM 548
VRAT+ LARLIR PRL++F L LR K V EIG + RPF +++ M+ ++ ++++
Sbjct: 195 VRATIALARLIRQRQPRLWDFCLKLRHKDAVRTEIG--VGRPFLHLSGMYGVENGCMAVV 252
Query: 549 WPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSF----KEDIPISMIHLN 604
WP+ HP N+N LI W+L DP + D +R + K + +PI +HLN
Sbjct: 253 WPLAPHPTNRNELIVWDLAQDPAELASLDAETVRRRMYTKTEELAAAGETRLPIKTVHLN 312
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNN-TYIWKKIFLDYKINNSDLE 663
+SP+VI NLK L R+ DL A + + A+++ +W ++F+
Sbjct: 313 KSPVVIGNLKTLGPARE-RWGLDLERALVHAERAAALGRTLEPLWAQVFVKPAAGGP--- 368
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
+++DE+LY F+ +D +L LR + L++ F++ +L+EL+F YRARNF +TL
Sbjct: 369 VDVDEDLYGGFLGDEDRRQLQRLRGLDGAALASRRPAFDDPRLDELLFRYRARNFADTLD 428
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALL 774
E +RW +R +R + + + I+ L + A E D + ++L
Sbjct: 429 ADERERWAAHRHARLIAGAGGVLTLQAYAERIDELAEAAAERDDERAQSIL 479
>gi|34496784|ref|NP_900999.1| exonuclease I [Chromobacterium violaceum ATCC 12472]
gi|34102639|gb|AAQ59004.1| exodeoxyribonuclease I [Chromobacterium violaceum ATCC 12472]
Length = 472
Score = 426 bits (1096), Expect = e-116, Method: Composition-based stats.
Identities = 192/432 (44%), Positives = 277/432 (64%), Gaps = 7/432 (1%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
N TF W+DYETFG R+DRP QFA IRTD LN I P+MLYC+PAPD+LP +ACL+T
Sbjct: 3 NHTFFWHDYETFGAVPRQDRPSQFAGIRTDAELNEIGEPVMLYCRPAPDYLPTLQACLLT 62
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ C G+ E++FA +IE+ P TI VGYN++ FDDE+TRF+FWRNLI+PY RE
Sbjct: 63 GITPQLCRQQGVAEHEFAGVIERELATPATIGVGYNSLRFDDEVTRFLFWRNLIDPYARE 122
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+N+C RWDL+++++A Y L P GI WP +G+ SFKLEHLS N L+H AHDALSDV
Sbjct: 123 WQNHCGRWDLLDLVRATYALRPDGIVWPKHEDGRTSFKLEHLSAANGLAHASAHDALSDV 182
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR P+LF++ L+LRKK V ++ +P +++ M+ + ++++W
Sbjct: 183 RATIALARLIRQRQPKLFDYYLTLRKKDAVKVQLSLHDPKPVLHVSGMYGVERGNLAVVW 242
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLNRS 606
P+ HP N N +I W+L HDP + + IR + + + E + P+ IH+N+S
Sbjct: 243 PLAAHPTNANEVIVWDLAHDPAELRGLSADDIRQRMFTRADELPEGVARLPVKTIHINKS 302
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNI 666
P V++NLK L + R+ DL ++ + A ++ + + +W++++ D +
Sbjct: 303 PFVVANLKALGDDNAARWGMDLAAIHRHAEAARALPDLSALWRRVYQREAGEPQD----V 358
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
D+ LY F+S D L +R +S +L+ FE+ +L EL+F YRARNF +TLS E
Sbjct: 359 DQNLYGGFVSNNDRKALQKMRRLSAAQLAGEMALFEDPQLAELLFRYRARNFPDTLSGDE 418
Query: 727 LKRWKKYRISRF 738
KRWK + +R
Sbjct: 419 QKRWKAWCQARL 430
>gi|319944538|ref|ZP_08018809.1| exodeoxyribonuclease I [Lautropia mirabilis ATCC 51599]
gi|319742251|gb|EFV94667.1| exodeoxyribonuclease I [Lautropia mirabilis ATCC 51599]
Length = 489
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 210/494 (42%), Positives = 295/494 (59%), Gaps = 35/494 (7%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
++F W+DYETFG + R DRP QFA IRTD+ LN + P+MLYCKPAPD+LPDP ACL+T
Sbjct: 3 ETSFFWHDYETFGRDPRLDRPAQFAGIRTDLDLNEVGEPVMLYCKPAPDYLPDPEACLLT 62
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
I PQ CL G+PEY+FA + GTI VGYN+I FDDE+TR + WR L PY+RE
Sbjct: 63 GILPQECLARGLPEYRFADAVLAELGASGTIGVGYNSIRFDDEVTRHLLWRTLRPPYDRE 122
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+N CSRWDL++V++A L P GI WP ++G+PSFKLEHLS N L+H +AHDALSDV
Sbjct: 123 WRNGCSRWDLLDVVRATAALRPEGIEWPRHDDGRPSFKLEHLSAANGLAHAQAHDALSDV 182
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LA LIRN PRL+NF L+LR+K+ VL EIG RPF +++ M+ ++ ++++W
Sbjct: 183 RATIALAALIRNRQPRLWNFCLALRQKQAVLTEIG--SDRPFIHVSAMYGAERGGMAVVW 240
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI W+L+HDP + D +IR L K E +PI + +N+S
Sbjct: 241 PLAQHPTNRNELIVWDLIHDPAELADLDAEQIRLRLFSKTEDLPEGMTRLPIRSLAINKS 300
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCA-------SSILNNTYIWKKIFLDYKINN 659
PIVI NLKVL+ ++ R+ D+ ++ + A +S ++ Y +
Sbjct: 301 PIVIGNLKVLTPAVIERWHIDMETIARHTETARRLTPQLASRMDEVY--------QRPRP 352
Query: 660 SDLELNIDEELYNNFISKKDNL----------KLAILRSMSP-KKLSNVNF-CFENKKLE 707
++D +LY FI D A + SP S++ FE+ +LE
Sbjct: 353 QGPAPDVDGDLYGGFIGNDDRRRLDDWRERLDATASQAAASPDADHSHIQIPSFEDPRLE 412
Query: 708 ELIFLYRARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESL---LKKANE 764
E+ F YRAR F + LS +E +RW + +R + N + F ++ L L +E
Sbjct: 413 EMSFRYRARQFPDMLSTEEKQRWVAHCHARLHQGAGNAMTLATFAHRLDELNQSLSPDDE 472
Query: 765 HDTKILNALLMYGK 778
H ++L AL YG+
Sbjct: 473 HGQRLLEALYDYGE 486
>gi|359785845|ref|ZP_09288991.1| exonuclease I [Halomonas sp. GFAJ-1]
gi|359296795|gb|EHK61037.1| exonuclease I [Halomonas sp. GFAJ-1]
Length = 497
Score = 394 bits (1011), Expect = e-106, Method: Compositional matrix adjust.
Identities = 190/479 (39%), Positives = 297/479 (62%), Gaps = 17/479 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+FLW+DYETFG + RRDRP QFAA+RTD LN I PI LYCKPA D+LP P ACLIT I
Sbjct: 10 SFLWHDYETFGADPRRDRPAQFAALRTDAELNEISEPIELYCKPADDYLPHPAACLITGI 69
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+PE +FA+ ++ +PGT VGYN++ FDDE++R +F+RNL++PY REW+
Sbjct: 70 TPQKAQRKGLPEAEFATQVQGHMSEPGTCVVGYNSLRFDDEVSRHLFYRNLLDPYAREWQ 129
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDLI+V++AFY L P GI WP +++G PSFKLEHL+ N ++H+ AHDA++DVRA
Sbjct: 130 NGNSRWDLIDVVRAFYALRPAGIEWPLRDDGAPSFKLEHLTAANGIAHEGAHDAVADVRA 189
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LARL++ NP+LF+++L LR K+ V ++ P A+P +I+ + + +L+ P+
Sbjct: 190 TIALARLLKARNPKLFDYLLGLRGKRAVANQLDLPSAKPLLHISRRYPASRGCSALVMPL 249
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N N +I ++L DP + L +IR+ + K E IP+ +IH+NR P+
Sbjct: 250 AEHPTNPNGVIVYDLSVDPSELLSMSAEQIRERVFVSKQDLSEGETRIPLKVIHINRCPV 309
Query: 609 VI--SNLKVLSSN-------LMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINN 659
V + LK + ++ R D++ ++ K ++ + + + K+ +
Sbjct: 310 VFPATALKDVEGPHKGEYGVIVERLGLDVDACRRHWK---TLRDASGVAHKVAEVFNSAY 366
Query: 660 SDLELNIDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNF 718
D + D LY+ +F S D ++ +R+M P L F F++ +LEE++F YRAR++
Sbjct: 367 EDTPHDPDLMLYSGSFFSAADRQQMERVRAMEPWDLVGQRFAFQDPRLEEMLFRYRARSY 426
Query: 719 IETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKA-NEHDTKILNALLMY 776
ETL +E ++W+ +R +R + + + F EIE +++ + + ++L L+MY
Sbjct: 427 PETLEGEEREQWEAFRWTRINDPVIAGFTLKAFAREIERYNQQSLTDRERQVLEELVMY 485
>gi|338999206|ref|ZP_08637857.1| exonuclease I [Halomonas sp. TD01]
gi|338763943|gb|EGP18924.1| exonuclease I [Halomonas sp. TD01]
Length = 497
Score = 384 bits (987), Expect = e-103, Method: Compositional matrix adjust.
Identities = 186/479 (38%), Positives = 291/479 (60%), Gaps = 17/479 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+FLW+DYETFG + RRDRP QFAA+RTD LN I PI LYCKPA D+LP P ACLIT I
Sbjct: 10 SFLWHDYETFGADPRRDRPAQFAALRTDAELNEIGEPIELYCKPADDYLPHPAACLITGI 69
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+PE +FA ++ +PGT VGYN++ FDDEI+R +F+RNL++PY REW+
Sbjct: 70 TPQKAQRKGLPEGEFARQVQGFMSEPGTCVVGYNSLRFDDEISRHLFYRNLLDPYSREWQ 129
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDLI+V++AFY L P GI WP + +G PSFKLEHL+ N ++H+ AHDA++DVRA
Sbjct: 130 NGNSRWDLIDVVRAFYALRPDGIEWPQREDGAPSFKLEHLTAANGIAHEGAHDAVADVRA 189
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LARL++ NP+LF+++L +R K+ V ++ P A+P +I+ + + +L+ P+
Sbjct: 190 TIALARLLKARNPKLFDYLLGMRGKRAVAKQLDLPSAKPLLHISRRYPASRGCSALVMPL 249
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N N +I ++L DP L +IR+ + + E IP+ +IH+NR P+
Sbjct: 250 AEHPTNPNGVIVYDLSVDPSDLLAMSAEQIRERVFVSQQDLSEGEVRIPLKVIHINRCPV 309
Query: 609 VI--SNLKVLS-------SNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINN 659
+ + LK + ++ R D++ + K ++ + +K+ +
Sbjct: 310 IFPATALKDVDGPRKGEYGTIVERLTIDIDACRGHWK---TLREANGVAQKVAEVFNAAY 366
Query: 660 SDLELNIDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNF 718
D+ + D LY+ +F S D ++ +M P L F F++ +LEE++F YRAR++
Sbjct: 367 EDVPQDPDLMLYSGSFFSAADRQQMERALAMDPWDLVGQRFAFQDPRLEEMLFRYRARSY 426
Query: 719 IETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKK-ANEHDTKILNALLMY 776
+TL +E ++W+ +R R + + + + F EIE ++ ++ + ++L L+MY
Sbjct: 427 PDTLEGEEREQWEAFRWMRINDPALSGFTLKAFAREIERYNQQILSDRERQVLEELVMY 485
>gi|352104652|ref|ZP_08960467.1| exonuclease I [Halomonas sp. HAL1]
gi|350598775|gb|EHA14883.1| exonuclease I [Halomonas sp. HAL1]
Length = 497
Score = 384 bits (986), Expect = e-103, Method: Compositional matrix adjust.
Identities = 187/480 (38%), Positives = 292/480 (60%), Gaps = 17/480 (3%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++FLW+DYETFG + RRDRP QFAA+RTD LN I PI LYCKPA D+LP P ACLIT
Sbjct: 9 ASFLWHDYETFGADPRRDRPAQFAALRTDAELNEIGEPIELYCKPADDYLPHPAACLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ +G+ E +FA I++ +PGT VGYN++ FDDE++R +F+RNL++PY REW
Sbjct: 69 ITPQKAQRHGLAEAEFAGEIQRHMSEPGTCVVGYNSLRFDDEVSRHLFYRNLLDPYSREW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+N SRWDLI+V++AFY L P GI WP + +G PSFKLEHL+ N ++H+ AHDA++DVR
Sbjct: 129 QNGNSRWDLIDVVRAFYALRPTGIEWPLREDGAPSFKLEHLTAANGIAHEGAHDAVADVR 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARL++ N +LF+++L LR K+ V ++ A+P +I+ + + +L+ P
Sbjct: 189 ATIALARLLKERNAKLFDYLLGLRGKRAVAKQLDLANAKPLLHISRRYPASRGCSALVMP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP N N +I ++L DP L + +IRD + + E IP+ +IH+NR P
Sbjct: 249 LAEHPTNPNGVIVYDLSIDPSDMLSMSVEQIRDRVFVSQQDLAEGDVRIPLKVIHINRCP 308
Query: 608 IVI--SNLKVLS-------SNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKIN 658
+V S LK + +++ R D+ ++ K ++ + + + +K+ +
Sbjct: 309 VVFPASALKDVDGPQKGEYGSIVERLGLDVTACRQHWK---TLRDASGVAEKVAEVFNAG 365
Query: 659 NSDLELNIDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARN 717
D + D LY+ +F S D ++ +R M P L F F++ +LEE++F +RAR+
Sbjct: 366 YEDAPQDPDLMLYSGSFFSAADRQQMERVREMEPWDLVGQRFAFQDPRLEEMLFRFRARS 425
Query: 718 FIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKA-NEHDTKILNALLMY 776
+ +TL +E ++W+ YR R + + + F EI ++ + + +IL L+M+
Sbjct: 426 YPDTLEGEEREQWEAYRWMRINDPALAGFTLKAFAREIAQYNQQTLTDRERQILEELVMF 485
>gi|359394147|ref|ZP_09187200.1| Exodeoxyribonuclease I [Halomonas boliviensis LC1]
gi|357971394|gb|EHJ93839.1| Exodeoxyribonuclease I [Halomonas boliviensis LC1]
Length = 497
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 186/479 (38%), Positives = 289/479 (60%), Gaps = 17/479 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+FLW+DYETFG + RRDRP QFAA+RTD LN I PI LYCKPA D+LP P ACLIT I
Sbjct: 10 SFLWHDYETFGADPRRDRPAQFAALRTDADLNEIGEPIELYCKPADDYLPHPAACLITGI 69
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ +G+PE +FA I++ +PGT VGYN++ FDDE++R +F+RNL++PY REW+
Sbjct: 70 TPQKAQRHGLPEAEFAGEIQRHMSEPGTCVVGYNSLRFDDEVSRHLFYRNLLDPYSREWQ 129
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDLI++++AFY L P GI WP + +G PSFKLEHL+ N ++H+ AHDA++DVRA
Sbjct: 130 NGNSRWDLIDIVRAFYALRPDGIEWPLREDGAPSFKLEHLTAANGIAHEGAHDAVADVRA 189
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LARL++ N +LF+++L LR K+ V ++ P A+P +I+ + + +L+ P+
Sbjct: 190 TIALARLLKARNAKLFDYLLGLRGKRAVAKQLDLPNAKPLLHISRRYPASRGCSALVMPL 249
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N N +I ++L DP L +IR+ + + E IP+ +IH+NR P+
Sbjct: 250 AEHPTNPNGVIVYDLSVDPSDMLGMSAEQIRERVFVSQQDLTEGEARIPLKVIHINRCPV 309
Query: 609 VI--SNLKVLS-------SNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINN 659
V S LK + ++ R D+ ++ K ++ + + K+ +
Sbjct: 310 VFPASALKDVEGPQQGEYGTIVARLGLDVAACRQHWK---TLRDANGVAAKVAEVFSAGY 366
Query: 660 SDLELNIDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNF 718
D + D LY+ +F S D ++ +R M P L F F++ +LEE++F +RAR++
Sbjct: 367 DDAPQDPDLMLYSGSFFSAADRQQMERVREMEPWDLVGQRFAFQDPRLEEMLFRFRARSY 426
Query: 719 IETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKA-NEHDTKILNALLMY 776
+TL +E ++W+ +R R + + + F EI ++ + + +IL L+M+
Sbjct: 427 PDTLEGEEREQWEAFRWMRINDPALAGFTLKAFAREIAQYNQQTLTDRERQILEELVMF 485
>gi|399912599|ref|ZP_10780913.1| exonuclease I [Halomonas sp. KM-1]
Length = 496
Score = 382 bits (980), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/479 (38%), Positives = 286/479 (59%), Gaps = 17/479 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFLW+DYETFG + RRDRP QFAA+RTD N + P+ L+CKPA D+LP P+ACLIT I
Sbjct: 10 TFLWHDYETFGADPRRDRPSQFAAVRTDSDFNELGEPVELFCKPADDYLPHPQACLITGI 69
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+PE +FA I + +PGT ++GYN++ FDDE++R +F+RNL++PY REW+
Sbjct: 70 TPQQARRRGLPEAEFAGRIHALMSEPGTCALGYNSLRFDDEVSRCLFYRNLLDPYSREWQ 129
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDLI+ ++AF+ L P GI WP + +G PSF+LE L+ N ++H+ AHDA++DVRA
Sbjct: 130 NGNSRWDLIDAVRAFHALRPAGIAWPKREDGSPSFRLEDLTAANGIAHEGAHDAVADVRA 189
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LARL+R N RLF+++L+LR K+ V + P +P +++ + + +L+ P+
Sbjct: 190 TIALARLLRQRNERLFDYLLALRSKREVAKRLDVPGRKPVLHVSRRYPASRGCSALVMPL 249
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N N +I ++L +P+ + +IR + + E IP+ +IH+NRSP+
Sbjct: 250 AEHPTNPNGVIVYDLSVEPQALIEMSAEQIRQRVFVSSDDLAEGEARIPLKVIHINRSPV 309
Query: 609 VI--SNLKVLS-------SNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINN 659
++ + LK + ++ R DL N K ++ + + K +
Sbjct: 310 ILPAAALKDVEGPRQGEYGEIVERLGLDLAACRANWK---RLMASPEVGGKAAEVFAQAP 366
Query: 660 SDLELNIDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNF 718
D + D LY+ F S D ++ +R SP L + F F++ +LEE++F YRAR++
Sbjct: 367 PDGPHDPDLMLYSGGFFSPADRQEMQRVRDASPWDLVDARFAFQDPRLEEMLFRYRARSY 426
Query: 719 IETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKA-NEHDTKILNALLMY 776
+TLS +E RW+ YR R + + + F EIE + A ++ D IL L+M+
Sbjct: 427 PDTLSSEEQARWEAYRWDRLNDAAVAGFTLRDFAREIERFNQVALSDRDRAILEELVMH 485
>gi|415923244|ref|ZP_11554755.1| Exodeoxyribonuclease I subunit C [Herbaspirillum frisingense GSF30]
gi|407760528|gb|EKF69794.1| Exodeoxyribonuclease I subunit C [Herbaspirillum frisingense GSF30]
Length = 282
Score = 380 bits (976), Expect = e-102, Method: Composition-based stats.
Identities = 166/264 (62%), Positives = 200/264 (75%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
N TFLW+DYETFG RRDRP QFAA+RTD LN I PIM+YCKPAPD+LPDP +CLIT
Sbjct: 3 NHTFLWHDYETFGAVPRRDRPAQFAAVRTDAELNEIGEPIMIYCKPAPDYLPDPVSCLIT 62
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ CL NGIPE+ FA+ IE+ +PGTI VGYNTI FDDE+TRFMFWRNLI+PY RE
Sbjct: 63 GITPQHCLENGIPEHAFAAQIEQALGEPGTIGVGYNTIRFDDEVTRFMFWRNLIDPYARE 122
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W N C RWDL++V++ Y L P GI WP K +G SFKLEHLS N L H+ AHDALSDV
Sbjct: 123 WANGCGRWDLLDVVRLTYALRPDGIQWPTKEDGSVSFKLEHLSKANGLLHEAAHDALSDV 182
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR +NPRLF+F L+L KK+ AEIG P A+PF +++ MF ++LMW
Sbjct: 183 RATIALARLIRQHNPRLFDFALALHKKEKAAAEIGLPAAKPFLHVSGMFPVAQGCLALMW 242
Query: 550 PICIHPMNKNILITWNLLHDPKKF 573
P+ +HP NKN +I W+L +DP +
Sbjct: 243 PLGMHPTNKNEVIAWDLGYDPAEL 266
>gi|307546461|ref|YP_003898940.1| exonuclease I [Halomonas elongata DSM 2581]
gi|307218485|emb|CBV43755.1| exonuclease I [Halomonas elongata DSM 2581]
Length = 506
Score = 374 bits (961), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/479 (39%), Positives = 284/479 (59%), Gaps = 17/479 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFLW+DYETFG + RRDRP QFAAIRTD N I PI L+CKPA D+LP P+ACLIT I
Sbjct: 20 TFLWHDYETFGADPRRDRPSQFAAIRTDADFNEIGEPIELFCKPADDYLPHPQACLITGI 79
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+PE +FA ++ +PGT ++GYN + FDDE+ R +F+RNLI+PY REW+
Sbjct: 80 TPQQAKRRGLPEAEFAGRVQAAMSEPGTCALGYNNLRFDDEVGRHLFYRNLIDPYAREWQ 139
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDLI+V++AF+ L P GITWP +++G PSFKLE L+ N + H AHDAL+DVRA
Sbjct: 140 NGNSRWDLIDVVRAFHALRPDGITWPTRDDGTPSFKLEDLTAANGIEHAGAHDALADVRA 199
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LARL+R +N LF+++L +R K+ V I +P +I+ + + +L+ P+
Sbjct: 200 TIELARLLRRSNANLFDYLLGMRGKRAVGRAIDVASRKPVLHISRRYPASRGCSALVMPL 259
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N N +I ++L DP+ L D +IRD + + E IP+ +IH+N+ P+
Sbjct: 260 AEHPTNPNGVIVYDLAVDPEPLLSLDAQQIRDRVFVSNDDLAEGESRIPLKVIHINKCPV 319
Query: 609 VIS--NLKVLS-------SNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINN 659
++ LK S ++ R D+ ++ K ++ + + ++F +
Sbjct: 320 IMPANALKDASGPHRGEYGEIVERLGVDVASCRRHWKALAASPDVSARVAEVFAGPPPES 379
Query: 660 SDLELNIDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNF 718
+ D LY+ F S D ++ +R P L F F++ +LEE++F YRAR++
Sbjct: 380 PH---DPDLMLYSGGFFSPSDRQQMQRVRDSDPWDLVGARFAFQDPRLEEMLFRYRARSY 436
Query: 719 IETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKA-NEHDTKILNALLMY 776
+TL+ +E RW+ +R R + + + F EIE L + + + + +IL L+M+
Sbjct: 437 PDTLTGEEQARWEAFRWERMNDPAVAGFTLTEFAREIERLNQVSLADRERQILEELVMH 495
>gi|409199857|ref|ZP_11228060.1| exonuclease I [Pseudoalteromonas flavipulchra JG1]
Length = 489
Score = 370 bits (951), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 188/473 (39%), Positives = 285/473 (60%), Gaps = 9/473 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
T W+DYE++G ++DRP QFA IRTD+ LN I P++ YC+PAPD+LP P+ACL+T I
Sbjct: 18 TIFWHDYESWGATPQKDRPSQFAGIRTDLDLNIIGEPLIEYCQPAPDYLPHPQACLVTGI 77
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L G+ E +F + I F KP T GYN+I FDDE+TR+ +RN +PYEREW+
Sbjct: 78 TPQLALKKGLTEAEFMARIHTEFAKPQTCVAGYNSIRFDDELTRYSLYRNFYDPYEREWQ 137
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD+I++++A Y L P GI WP + +G PSFKLEHL+ N + H AHDALSDV A
Sbjct: 138 NGNSRWDIIDLVRACYALRPEGIEWPTREDGNPSFKLEHLTVANGIEHGAAHDALSDVTA 197
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+LI+ P+L+ F + R KK V + I +P +++ MF ++ + + P+
Sbjct: 198 TIALAKLIKTKQPKLYEFYFNHRHKKAVSSLIDVFNMQPLVHVSSMFPAQQGCTTWIAPM 257
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED-IPIS--MIHLNRSPI 608
HP+N N +I ++L P+ D+ ++ L K++ +D +P+ ++H+N+ P+
Sbjct: 258 SFHPVNSNAVICFDLTQSPEVLNDLDVEALKQRLYTKRSELGDDELPVGLKLVHINKCPL 317
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
V +L N R D +N+K + ++F D K + N D
Sbjct: 318 VAPAKTLLPENAA-RLGIDREQCLENLKYLKARPELRDKVAEVFSDEK--GFEKPSNPDY 374
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
+LY+ F SK D K AI+R+ SP++L+ + FE+ K L+F YRARN+ +TLS EL
Sbjct: 375 QLYDGFTSKADKAKFAIIRNASPEELATIKLDFEDSKFNTLLFRYRARNWPQTLSPVELD 434
Query: 729 RWKKYRISRF-YNKKNNLYNINMFYLEIESLLK--KANEHDTKILNALLMYGK 778
+W+KY ++ +N+ N + F LE+E+L+ + NEH+ +IL AL Y +
Sbjct: 435 KWRKYCQNKLMHNEDNPSISAEDFMLELENLVAENEGNEHNMQILKALYHYAQ 487
>gi|325983472|ref|YP_004295874.1| exodeoxyribonuclease I [Nitrosomonas sp. AL212]
gi|325532991|gb|ADZ27712.1| Exodeoxyribonuclease I [Nitrosomonas sp. AL212]
Length = 478
Score = 368 bits (945), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 182/473 (38%), Positives = 277/473 (58%), Gaps = 12/473 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF W+DYETFG + RRDRP QFA +RTD LN I P+M+YCKP DFLP P ACL+T I
Sbjct: 4 TFYWHDYETFGADPRRDRPAQFAGVRTDEALNEIGEPLMIYCKPTRDFLPHPEACLLTGI 63
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+PE +F + I +PGT VGYN++ FDDE+TRF +RN +PY REW+
Sbjct: 64 TPQLADAQGLPEPEFIARIHAELAQPGTCGVGYNSLRFDDEVTRFTLYRNFYDPYAREWQ 123
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
SRWD+I++++ Y L P GITWP +G+PSFKLE L N + H+ AHDALSDVR
Sbjct: 124 QGNSRWDIIDLVRMTYALRPAGITWPQHEDGQPSFKLEDLVAANGIWHESAHDALSDVRV 183
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LARL+R PRLF+++L LR K+ A++ P + T M+ +K SL+ P+
Sbjct: 184 TIALARLLRMQQPRLFDWLLQLRDKRKAAAQLDLITHNPVLHTTRMYPAKTGCTSLIMPL 243
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
+ P N N ++ ++L HDP+ FL + + + L + + E +P+ I +N+ P
Sbjct: 244 IVEPGNNNSILVYDLRHDPEMFLPLNADDLAPLLFTRNDDLPEGMQRLPVKSIKINKCP- 302
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
++ L + R DL+ +++ + ++ + ++++ Y + ++D
Sbjct: 303 ALAPRNTLDNETAERIALDLDVCYRHWQTLCAMPD---FFQRVATAYTSRTFESSSDVDV 359
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
LY+ F+ D L +R+ SP++L + F F +K+L EL+F YRARN+ ETL E +
Sbjct: 360 ALYDGFLDNADAALLEQIRAASPQQLGEMQFNFHDKRLSELLFRYRARNWPETLKPAEAE 419
Query: 729 RWKKYRISRFYNKK-NNLYNINMFYLEIESLLKKANEHD---TKILNALLMYG 777
RW+ R+ R + F +I +LL++A + D +IL+A+ +G
Sbjct: 420 RWELLRLQRLTQADGGGSITFDEFSTQI-ALLREARKTDGQAEQILDAVEDWG 471
>gi|392548088|ref|ZP_10295225.1| exonuclease I [Pseudoalteromonas rubra ATCC 29570]
Length = 483
Score = 368 bits (945), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 194/473 (41%), Positives = 284/473 (60%), Gaps = 9/473 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
T W+DYET+G + ++DRP QFA IRTD+ LN I P++ YC+PA D+LP P ACL+T I
Sbjct: 12 TIYWHDYETWGASPQKDRPSQFAGIRTDLDLNIIGEPLIEYCRPAADYLPQPEACLVTGI 71
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L +G+PE +F + I F KP T GYN+I FDDE+TR+ +RN +PYEREW+
Sbjct: 72 TPQHALKHGLPESEFMAKIHAEFSKPNTCVAGYNSIRFDDEVTRYSLYRNFYDPYEREWQ 131
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD+I++++A Y L P GI WP K++G PSF+LE L+ N + H AHDALSDV A
Sbjct: 132 NGNSRWDIIDLVRACYALRPEGIVWPKKDDGTPSFRLEDLTKANGIEHADAHDALSDVTA 191
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+LI+ P+L+ F SLR KK + I +P + + + S + P+
Sbjct: 192 TIALAKLIKEKQPKLYQFFFSLRGKKALADLIDVFNMQPLVHTSSRIPATQGCTSWIAPM 251
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED-IPIS--MIHLNRSPI 608
HP+NKN ++ +NL +DP+ L + ++R L K + ED +P+ ++HLN+ PI
Sbjct: 252 SFHPVNKNAVVCFNLTNDPQVLLDLSVEELRARLYTKHSDLGEDELPVGLKLVHLNKCPI 311
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
+ +L N R D +N+K S ++F D + + SD N D
Sbjct: 312 LAPAKTLLPENAA-RLGIDREQCLENLKVLKSNPELRNKVAEVFND-QGDFSDT-TNPDY 368
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
+LYN FISK D KLAI+RS P +L ++ FE+ K L+F YRARN+ E+LS EL
Sbjct: 369 QLYNGFISKADKAKLAIVRSAPPHELGSLALEFEDPKFHTLLFRYRARNWPESLSENELD 428
Query: 729 RWKKYRISRFYNKKNNLY-NINMFYLEIESLL--KKANEHDTKILNALLMYGK 778
+W+KY ++ + ++N N F + +E+L+ + NE + +L AL Y +
Sbjct: 429 QWRKYCQNKLMHGEDNPSINAQDFMITLENLVYEHEGNEKNLAVLKALYHYAQ 481
>gi|392541778|ref|ZP_10288915.1| exonuclease I [Pseudoalteromonas piscicida JCM 20779]
Length = 489
Score = 367 bits (943), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 187/473 (39%), Positives = 285/473 (60%), Gaps = 9/473 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
T W+DYE++G ++DRP QFA IRTD+ LN I P++ YC+PAPD+LP P+ACL+T I
Sbjct: 18 TIYWHDYESWGATPQKDRPSQFAGIRTDLDLNIIGEPLIEYCQPAPDYLPHPQACLVTGI 77
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L G+ E +F + I F KP T GYN+I FDDE+TR+ +RN +PYEREW+
Sbjct: 78 TPQLALKKGLTEAEFMAKIHAEFAKPQTCVAGYNSIRFDDELTRYSLYRNFYDPYEREWQ 137
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD+I++++A Y L P GI WP + +G PSFKLEHL+ N + H AHDALSDV A
Sbjct: 138 NGNSRWDIIDLVRACYALRPEGIEWPTREDGNPSFKLEHLTVANGIEHGAAHDALSDVTA 197
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+LI+ P+L+ F + R KK V + I +P +++ MF ++ + + P+
Sbjct: 198 TIALAKLIKTKQPKLYEFYFNHRHKKAVSSLIDVFNMQPLVHVSSMFPAQQGCTTWIAPM 257
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED-IPIS--MIHLNRSPI 608
HP+N N +I ++L P+ D+ ++ L K++ ED +P+ ++H+N+ P+
Sbjct: 258 SFHPINSNAVICFDLTQSPEVLNDLDVEALKQRLYTKRSELGEDELPVGLKLVHINKCPL 317
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
V + K LS R D +N+K + ++F D + + N D
Sbjct: 318 V-APAKTLSPENAARLGIDREQCLENLKYLKARPELRDKVAEVFSDEQ--GFEKPSNPDY 374
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
+LY+ F SK D K AI+R+ SP++L+ + FE+ K L+F YRARN+ ++LS EL
Sbjct: 375 QLYDGFTSKADKAKFAIIRNASPEELATIELDFEDGKFNTLLFRYRARNWPQSLSPVELD 434
Query: 729 RWKKYRISRF-YNKKNNLYNINMFYLEIESLLK--KANEHDTKILNALLMYGK 778
+W+KY ++ +N+ N + F LE+E+L+ + NE + +IL AL Y +
Sbjct: 435 KWRKYCQNKLMHNEDNPSISAEDFMLELENLVAENEGNERNMQILKALYHYAQ 487
>gi|339484596|ref|YP_004696382.1| Exonuclease domain-containing protein [Nitrosomonas sp. Is79A3]
gi|338806741|gb|AEJ02983.1| Exonuclease domain protein [Nitrosomonas sp. Is79A3]
Length = 477
Score = 364 bits (935), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 179/469 (38%), Positives = 273/469 (58%), Gaps = 12/469 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
T W+DYETFG + RRDRP QFA +RTD LN I P+++YCKPA DFLP P ACL+T I
Sbjct: 4 TLYWHDYETFGADPRRDRPAQFAGVRTDEALNEIGEPLVIYCKPARDFLPHPEACLLTGI 63
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+PE +F + I F +P T VGYN++ FDDE+TRF +RN +PY REW+
Sbjct: 64 TPQLADEKGLPEPEFIARIHAEFAQPNTCGVGYNSLRFDDEVTRFTLYRNFYDPYAREWQ 123
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
SRWD+I++++ Y L P GI WP G+ SF+LE L N + H+ AHDALSDVRA
Sbjct: 124 QGNSRWDIIDLVRMTYALRPVGIVWPQHEEGQSSFRLEDLVAANGILHESAHDALSDVRA 183
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LARL+R PRL++++ LR K+ A++ P + T M+ +K SL+ P+
Sbjct: 184 TIALARLLRTQQPRLYDWLFQLRDKRTAAAQLDLATHNPVLHTTRMYPAKTGCTSLVMPM 243
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
P N N ++ ++L DP+ FL D +++ L + + E +P+ I +N+ P
Sbjct: 244 ITEPGNNNSVLVYDLRQDPELFLPLDADELSQLLFTRSDELPEGMQRLPVKSIKINKCP- 302
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
++ L + R DL+ ++ + ++ ++++ Y + ++D
Sbjct: 303 ALAPRNTLDNEAAERIALDLDACHRHWQ---ALCAQPDFFQRVATAYTSRAFEPSGDVDV 359
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
LY+ F+ D LA +R SPK+L+ + F F +++L EL+F YRARN+ ETL+ E +
Sbjct: 360 ALYDGFLDNADAASLAQIRRASPKQLAKMRFDFHDQRLPELLFRYRARNWPETLTTIESE 419
Query: 729 RWKKYRISRFYNKKNNLYNINMFYLEIESLL----KKANEHDTKILNAL 773
RW++ R+ R + N +I + +L +KA+E+ +ILNAL
Sbjct: 420 RWEQMRLQRL-TQGNGGGSITFAEFAAQIVLLREVQKADENAQQILNAL 467
>gi|88859960|ref|ZP_01134599.1| exodeoxyribonuclease I [Pseudoalteromonas tunicata D2]
gi|88817954|gb|EAR27770.1| exodeoxyribonuclease I [Pseudoalteromonas tunicata D2]
Length = 483
Score = 363 bits (931), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 185/479 (38%), Positives = 281/479 (58%), Gaps = 11/479 (2%)
Query: 307 HNGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRAC 366
H+ +T W+D+ETFG N ++DRP QFA +RTD LN I P+++YC+PAPD+LP P+AC
Sbjct: 7 HDSQATIYWHDFETFGANPQKDRPSQFAGVRTDFDLNIIGEPLIIYCQPAPDYLPHPQAC 66
Query: 367 LITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPY 426
LIT ITPQ L +G+ E +F + I + F KP T GYN+I FDDE++R+ F+RN +PY
Sbjct: 67 LITGITPQHALKHGMIEAEFIAKIHQEFAKPNTCVAGYNSIRFDDEVSRYAFYRNFYDPY 126
Query: 427 EREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDAL 486
REW+N SRWD+I++++A Y L P GI WP K +G PSF+LE L+ N + H AHDAL
Sbjct: 127 AREWQNGNSRWDIIDLVRACYALRPEGIQWPLKEDGTPSFRLEDLTKANGIEHAAAHDAL 186
Query: 487 SDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYIS 546
SDV AT+ LA+LI++ P+L++F LR KK V P + + + +
Sbjct: 187 SDVTATIALAKLIKDKQPKLYDFFFKLRFKKAVAELFDIYNMVPLVHTSSKIPASQGCTT 246
Query: 547 LMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHL 603
+ P+ HP+NKN +I +NL HDP+ L ++IR L K+ E+ I + ++HL
Sbjct: 247 WIAPMAFHPVNKNAVICFNLTHDPRPLLALSADEIRARLYTKRAELAENEQPIGLKLVHL 306
Query: 604 NRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DL 662
N+ PIV +L N + D N+ + + + + +K+ ++ N
Sbjct: 307 NKCPIVAPAKTLLPENAA-KIGIDREQCLANL---AILKAHPELREKVAEVFQSENEFAG 362
Query: 663 ELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
N D +LY F S D K I+R+ P +L+ + FE+KK + L+F YRARN+ TL
Sbjct: 363 SENCDYQLYAGFTSNADKHKFDIIRAAEPDQLATLGLDFEDKKFDTLLFRYRARNWPHTL 422
Query: 723 SYKELKRWKKYRISRF-YNKKNNLYNINMFYLEIESLLK--KANEHDTKILNALLMYGK 778
+ EL++W+KY ++ Y + + + F + +E+L+ + NE + IL AL Y +
Sbjct: 423 TTAELEKWRKYCQNKLMYGEDSPAIDAQEFMMTLENLVHENEGNERNMTILKALYHYAQ 481
>gi|358448778|ref|ZP_09159273.1| exonuclease I [Marinobacter manganoxydans MnI7-9]
gi|357226928|gb|EHJ05398.1| exonuclease I [Marinobacter manganoxydans MnI7-9]
Length = 481
Score = 359 bits (922), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 179/475 (37%), Positives = 276/475 (58%), Gaps = 11/475 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F W+DYETFG++ DRP QFA +RTD LN I++P++LYCKPA D+LP P ACLIT I
Sbjct: 4 SFYWHDYETFGVDPVHDRPSQFAGVRTDADLNIIEDPLVLYCKPADDYLPSPEACLITGI 63
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L +G+PE +F + I + F +PGT VGYN++ FDDE+TR +RNL +PY REW+
Sbjct: 64 TPQKALEDGLPEAQFIARINEAFSQPGTCVVGYNSLRFDDEVTRHTLYRNLRDPYAREWQ 123
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD+I++++ Y L P GI WP K +G PSFKLE L+ N ++H+ AHDA+SDV A
Sbjct: 124 NGNSRWDIIDMVRLTYALRPDGINWPRKEDGSPSFKLEALTVANGITHEAAHDAMSDVEA 183
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ PRLF+F+L + K A + +P F+I+ + + +L+ P+
Sbjct: 184 TIAVAKLIKEKQPRLFDFVLQNKDKHSARAMLDTATMKPVFHISAKYPATRGCCALVAPV 243
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLNRSPI 608
HP NKN++I ++L DP + + +IR+ + + E + P+ + LN+ P+
Sbjct: 244 AEHPTNKNLVIVYDLREDPSELIAASAEQIRERVFTSQAELGEGVSRFPLKGVQLNKCPV 303
Query: 609 VISN--LKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNI 666
+ L LS + D + N+ + + F + + S+L +
Sbjct: 304 LAPANMLSTLSPERLEELALDGDTLRANLAMLRKAPDLPARIAEAF--DQPHESEL-TDP 360
Query: 667 DEELY-NNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
DE+LY FISK D KL + + L + FE+ +L+EL+F YRARN+ +L +
Sbjct: 361 DEQLYAGGFISKTDREKLNWVLEQPVETLGELEVTFEDDRLQELLFRYRARNYPGSLMGE 420
Query: 726 ELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKAN--EHDTKILNALLMYGK 778
E++RW+++R R + K ++ F E++ L IL L +YG+
Sbjct: 421 EMERWEEFRSQRLMHPKKGWRSLEAFAQELQRLAADPELTPERRHILEDLHLYGE 475
>gi|92115139|ref|YP_575067.1| exonuclease I [Chromohalobacter salexigens DSM 3043]
gi|91798229|gb|ABE60368.1| Exodeoxyribonuclease I subunit C [Chromohalobacter salexigens DSM
3043]
Length = 495
Score = 358 bits (920), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 180/481 (37%), Positives = 278/481 (57%), Gaps = 17/481 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
TFLW+DYETFG + RRDRP QFAAIRTD N + P+ YCKPA DFLP P+ACLIT
Sbjct: 7 EPTFLWHDYETFGADPRRDRPAQFAAIRTDSDFNPVGEPMTFYCKPADDFLPHPQACLIT 66
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G+ E +FA+ I PGT S+GYNT+ FDDE++R +F+RN I+PY RE
Sbjct: 67 GITPQAARRRGLAEIEFAARIHAEMSVPGTCSLGYNTLRFDDEVSRHLFYRNFIDPYSRE 126
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+N SRWDLI+V++ ++ L P GI WP + +G PSF+LE L+ N + H AHDAL+DV
Sbjct: 127 WQNGNSRWDLIDVVRTYHALRPDGIEWPTREDGAPSFRLEDLTAANGIEHAGAHDALADV 186
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARL++ N +LF ++L LR K+ V + +P +++ + + +L+
Sbjct: 187 RATIELARLLKARNAQLFEYLLKLRDKRTVARMLDIQARKPMLHVSRRYPASRGCSALVV 246
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N N +I ++L DP L + +IR+ + + E IP+ +IH+N+S
Sbjct: 247 PLAEHPSNPNGVIVYDLSVDPSPLLSMEAAQIRERVFASADELAEGEARIPLKVIHINKS 306
Query: 607 PIVI--SNLKVLS-------SNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK- 656
P+++ ++LK + L+ R D+ ++ K + + ++F +
Sbjct: 307 PVIMPAASLKDVDGPQRGEYGALVARLGLDMAACRRHWKQLQAAPDVAAKAAEVFAEGPG 366
Query: 657 INNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRAR 716
SD +L + F S D ++ R M L+ +F F++ +LEE++F RAR
Sbjct: 367 APPSDPDLML---YSGGFFSPADRREMQRAREMPAWDLAEASFAFQDPRLEEMLFRLRAR 423
Query: 717 NFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLK-KANEHDTKILNALLM 775
N+ +TLS +E +W+ YR +R + + + F EIE L + ++ ++L L+M
Sbjct: 424 NYPDTLSSEEQAQWEAYRWARMNDAEVASLTLTGFAREIERLNQVPLDDAQRQVLEELVM 483
Query: 776 Y 776
+
Sbjct: 484 H 484
>gi|442611447|ref|ZP_21026153.1| Exodeoxyribonuclease I [Pseudoalteromonas luteoviolacea B = ATCC
29581]
gi|441747375|emb|CCQ12215.1| Exodeoxyribonuclease I [Pseudoalteromonas luteoviolacea B = ATCC
29581]
Length = 479
Score = 358 bits (919), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 186/478 (38%), Positives = 283/478 (59%), Gaps = 11/478 (2%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
+ +T+ WYD+E+FG N ++DRP QFA +RTD N I P+++YC+ APD+LP P ACL
Sbjct: 4 DNQATYYWYDFESFGANPQKDRPSQFAGVRTDANFNIIGEPLIIYCRQAPDYLPHPEACL 63
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
IT ITPQ G+ E +F I + F K T VGYN I FDDE+TR+ +RN +PYE
Sbjct: 64 ITGITPQLANRKGLIEAEFMQRIHEEFSKANTCVVGYNNIRFDDELTRYSLYRNFYDPYE 123
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
REW+N SRWDLI+V++A Y L P G+ WP K++G PSFKLE L+ N+++H +AHDALS
Sbjct: 124 REWQNGNSRWDLIDVVRACYALRPDGMQWPLKDDGSPSFKLEQLTVANDIAHGQAHDALS 183
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ LA+ ++ P+LF F L+ R KK + + I P + + ++ +
Sbjct: 184 DVLATIELAKKLKACQPKLFEFFLNHRHKKALSSLIDVFNMTPLVHTSSKINASQGCTTW 243
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
+ P+ HP NKN LIT++L DP L ++IR+ + K+ ED I + ++H+N
Sbjct: 244 IAPMSFHPQNKNALITFDLTQDPSPLLTLSADEIRERMYTKRTELSEDETPIGLKLVHIN 303
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLE 663
+ PI+ +L N R + D +++ S N + +K+ Y N + +
Sbjct: 304 KCPILAPAKTLLPENAK-RLEIDREACLRHLAILKS---NPNLREKVSEVYADNRAFEAS 359
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
N D +LY F S D K +++R SP++L +++ F++ + L+F YRARN+ ETLS
Sbjct: 360 TNADYQLYQGFASNGDKAKFSVIRDCSPQQLGSLDLQFDDPRYTTLLFRYRARNWPETLS 419
Query: 724 YKELKRWKKYRISRFYNKKNNLY-NINMFYLEIESLL--KKANEHDTKILNALLMYGK 778
+EL++W+KY + N +N N + F L +E+L+ + NE+ IL AL Y +
Sbjct: 420 PQELEKWRKYCQDKLLNDLDNPSINASDFMLTLENLVHEHEGNENKLSILKALYHYAQ 477
>gi|385332116|ref|YP_005886067.1| exonuclease I [Marinobacter adhaerens HP15]
gi|311695266|gb|ADP98139.1| exonuclease I [Marinobacter adhaerens HP15]
Length = 481
Score = 358 bits (919), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 179/475 (37%), Positives = 276/475 (58%), Gaps = 11/475 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F W+DYETFG++ DRP QFA +RTD LN I++P+++YCKPA D+LP P ACLIT I
Sbjct: 4 SFYWHDYETFGVDPVHDRPSQFAGVRTDADLNIIEDPLVIYCKPADDYLPSPEACLITGI 63
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L +G PE +F + I + F +PGT VGYN++ FDDE+TR +RNL +PY REW+
Sbjct: 64 TPQKALEDGFPEAEFIAQINEAFSQPGTCVVGYNSLRFDDEVTRHTLYRNLRDPYAREWQ 123
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD+I++++ Y L P GI WP K +G PSFKLE L+ N ++H+ AHDA+SDV A
Sbjct: 124 NGNSRWDIIDMVRLTYALRPEGINWPRKEDGSPSFKLEELTVANGIAHEAAHDAMSDVEA 183
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF+F+L + K A + +P F+I+ + + +L+ P+
Sbjct: 184 TIAMAKLIKEKQPKLFDFVLQNKDKHSARAMLDTAAMKPVFHISAKYPASRGCCALVAPV 243
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLNRSPI 608
HP NKN++I ++L DP + + +IR+ + + E + P+ + LN+ P+
Sbjct: 244 AEHPSNKNLVIVYDLREDPTELINASAEQIRERVFTSQAELGEGVSRFPLKGVQLNKCPV 303
Query: 609 VISN--LKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNI 666
+ L LS + D + N+ + + F + + SDL +
Sbjct: 304 LAPANMLSTLSPERLEELALDGDTLRANLAMLRKAPDLPSRIAEAF--DQPHESDL-TDP 360
Query: 667 DEELY-NNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
DE+LY FISK D KL + + L + FE+ +L+EL+F YRARN+ +L +
Sbjct: 361 DEQLYAGGFISKADREKLNWVLEQPVETLGELEVTFEDDRLQELLFRYRARNYPGSLVGE 420
Query: 726 ELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK--ILNALLMYGK 778
E++RW+++R R + K ++ F E++ L K IL L +YG+
Sbjct: 421 EMERWEEFRSQRLMHPKKGWRSLEAFAQELQRLAADPELTPQKRHILEDLHLYGE 475
>gi|119476956|ref|ZP_01617237.1| Exonuclease I [marine gamma proteobacterium HTCC2143]
gi|119449763|gb|EAW31000.1| Exonuclease I [marine gamma proteobacterium HTCC2143]
Length = 478
Score = 358 bits (918), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 179/473 (37%), Positives = 282/473 (59%), Gaps = 11/473 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F W+DYETFG + RDRP QFA +RTD N I P++++CKPA D LP P ACLIT I
Sbjct: 5 SFYWHDYETFGADPARDRPSQFAGVRTDSDFNIIGEPLVIFCKPAADILPQPEACLITGI 64
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L G+ E +F I F +PGT +VGYN++ FDDE++R+ +RN +PY REW+
Sbjct: 65 TPQQALEQGVCEAEFIRQIHAEFSQPGTCAVGYNSVRFDDEVSRYTLYRNFYDPYAREWQ 124
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD+I++++ L P GI WP +NG PSFKLE L+ N +SH+ AHDALSDV A
Sbjct: 125 NGNSRWDIIDMVRVCCALRPEGINWPTHDNGMPSFKLEQLTAANGISHESAHDALSDVHA 184
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF+++L LR K V A + P + + M+ + +L+ P+
Sbjct: 185 TIAMAKLIKQKQPKLFDYLLKLRSKHEVSAMLNVAEKLPVLHTSAMYPAHRFCTTLIMPV 244
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
+HP NKN +I ++L DP L + +I + L + E IP+ IH+NR P+
Sbjct: 245 AVHPTNKNGVICYDLSVDPAPLLSLNAGQITERLYTPASELPEGAARIPLKTIHINRCPV 304
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
V+++ K++ + R + DL A K+ + +++ + +K+ + + + D
Sbjct: 305 VVTS-KLMDEAVAERIQLDLPKARKHYQ---ALVKTQGLAEKLSEVFAERSFPERTDPDV 360
Query: 669 ELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY+ F S+ D +A +R SP +L +F FE+ +L++++F YRARNF E+LS +EL
Sbjct: 361 MLYSGGFFSQNDKAVMAQVRCSSPDELREHSFVFEDARLDDMLFRYRARNFPESLSAEEL 420
Query: 728 KRWKKYRISRFYNKKNNLY-NINMFYLEIESLL--KKANEHDTKILNALLMYG 777
++W ++R R + + ++ ++ F ++LL + ++ D IL L Y
Sbjct: 421 QQWHEFRYYRLTDPEADVSISMEEFLETTQALLNDEACSDRDRAILEELQDYS 473
>gi|373949080|ref|ZP_09609041.1| Exodeoxyribonuclease I [Shewanella baltica OS183]
gi|386325081|ref|YP_006021198.1| Exodeoxyribonuclease I [Shewanella baltica BA175]
gi|333819226|gb|AEG11892.1| Exodeoxyribonuclease I [Shewanella baltica BA175]
gi|373885680|gb|EHQ14572.1| Exodeoxyribonuclease I [Shewanella baltica OS183]
Length = 472
Score = 357 bits (917), Expect = 2e-95, Method: Composition-based stats.
Identities = 187/474 (39%), Positives = 283/474 (59%), Gaps = 24/474 (5%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+ W+DYETFG N +DRP QFA IRTD+ LN I P YCK APD+LP P A LIT I
Sbjct: 10 SIFWHDYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKQAPDYLPSPEAILITGI 69
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ GIPE +F I+ +F +P T GYN++ FDDE+TR+ F+RN I+PY REW+
Sbjct: 70 TPQLANLKGIPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQ 129
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD+I++++A Y P GI WP K +G PSFKLEHL+ N LSH+KAHDA+SDV A
Sbjct: 130 NGNSRWDIIDLVRACYAFRPEGINWPTKEDGSPSFKLEHLTHANGLSHEKAHDAMSDVYA 189
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LIR P+L+ + LR+K+ V +I +P +++ S+++ +L+ P+
Sbjct: 190 TIAMAKLIREKQPKLYQYYFDLRRKQAVSDQIDVLNMQPLVHVSSKISARNGCTTLISPV 249
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN +I NL D DI +I+ + + ED I + IHLN+ P
Sbjct: 250 AHHPTNKNAVICVNLAMDLTPLFELDIEQIKTRMYTPRADLAEDELPIAVKQIHLNKCPF 309
Query: 609 VISNLKVLSSNLMFRYKFDLNCA---FKNIKCASSILNNTYIWKKIFLDYKINNSDLELN 665
I++ K+LS R D A +K +K + +K+ L ++ ++S ++
Sbjct: 310 -ITSAKILSDEHAARLGIDKEFAREQYKRLKLHPELR------EKLALLFEHDDSRTTID 362
Query: 666 IDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
D LY+ F S+ D K+ I+R P+ L+ ++ F++ ++ E++F YRARN+ E L Y
Sbjct: 363 PDLMLYSGGFFSQADKAKMEIIRHTLPQNLAALDLQFDDPRIPEMLFRYRARNYPELLDY 422
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLK--KANEHDTKILNALLMY 776
+E +RW+++ +R ++ + L++E+LL+ +A+E K+L AL Y
Sbjct: 423 EESQRWREFCQNRLADQD--------YVLKLENLLQDTQADETKQKLLAALCHY 468
>gi|153000207|ref|YP_001365888.1| exonuclease I [Shewanella baltica OS185]
gi|151364825|gb|ABS07825.1| Exodeoxyribonuclease I [Shewanella baltica OS185]
Length = 472
Score = 357 bits (917), Expect = 2e-95, Method: Composition-based stats.
Identities = 188/474 (39%), Positives = 282/474 (59%), Gaps = 24/474 (5%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+ W+DYETFG N +DRP QFA IRTD+ LN I P YCK APD+LP P A LIT I
Sbjct: 10 SIFWHDYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKQAPDYLPSPEAILITGI 69
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ GIPE +F I+ +F +P T GYN++ FDDE+TR+ F+RN I+PY REW+
Sbjct: 70 TPQLANLKGIPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYVREWQ 129
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD+I++++A Y P GI WP K +G PSFKLEHL+ N LSH+KAHDA+SDV A
Sbjct: 130 NGNSRWDIIDLVRACYAFRPEGINWPTKEDGSPSFKLEHLTQANGLSHEKAHDAMSDVYA 189
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LIR P+L+ + LR+K+ V +I +P +++ S+++ +L+ P+
Sbjct: 190 TIAMAKLIREKQPKLYQYYFDLRRKQAVSDQIDVLNMQPLVHVSSKISARNGCTTLISPV 249
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN +I NL D DI +I+ + + ED I + IHLN+ P
Sbjct: 250 AHHPTNKNAVICVNLAMDLTPLFELDIEQIKTRMYTPRADLAEDELPIAVKQIHLNKCPF 309
Query: 609 VISNLKVLSSNLMFRYKFDLNCA---FKNIKCASSILNNTYIWKKIFLDYKINNSDLELN 665
I++ K+LS R D A +K +K + +K+ L ++ ++S +
Sbjct: 310 -ITSAKILSDEHAARLGIDKAFAREQYKRLKLHPELR------EKLALLFEHDDSRATTD 362
Query: 666 IDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
D LY+ F S+ D K+ I+R P+ L+ ++ F++ ++ E++F YRARN+ E L Y
Sbjct: 363 PDLMLYSGGFFSQADKAKMEIIRHTLPQNLAALDLQFDDPRIPEMLFRYRARNYPELLDY 422
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLK--KANEHDTKILNALLMY 776
+E +RW+++ SR ++ + L++E+LL+ +A+E K+L AL Y
Sbjct: 423 EESQRWREFCQSRLADQD--------YVLKLENLLQDTQADETKQKLLAALCHY 468
>gi|217973824|ref|YP_002358575.1| exonuclease I [Shewanella baltica OS223]
gi|217498959|gb|ACK47152.1| Exodeoxyribonuclease I [Shewanella baltica OS223]
Length = 470
Score = 357 bits (916), Expect = 3e-95, Method: Composition-based stats.
Identities = 190/479 (39%), Positives = 284/479 (59%), Gaps = 25/479 (5%)
Query: 307 HNGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRAC 366
H+ S F W+DYETFG N +DRP QFA IRTD+ LN I P YCK PD+LP P A
Sbjct: 4 HSQPSIF-WHDYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKQTPDYLPSPEAI 62
Query: 367 LITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPY 426
LIT ITPQ GIPE +F I+ +F +P T GYN++ FDDE+TR+ F+RN I+PY
Sbjct: 63 LITGITPQLANLKGIPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPY 122
Query: 427 EREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDAL 486
REW+N SRWD+I++++A Y P GI WP K +G PSFKLEHL+ N LSH+KAHDA+
Sbjct: 123 AREWQNGNSRWDIIDLVRACYAFRPEGINWPTKEDGSPSFKLEHLTQANGLSHEKAHDAM 182
Query: 487 SDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYIS 546
SDV AT+ +A+LIR P+L+ + LR+K+ V +I +P +++ S+++ +
Sbjct: 183 SDVYATIAMAKLIREKQPKLYQYYFDLRRKQAVSDQIDVLNMQPLVHVSSKISARNGCTT 242
Query: 547 LMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHL 603
L+ P+ HP NKN +I NL D DI +I+ + + ED I + IHL
Sbjct: 243 LISPVAHHPTNKNAVICVNLAMDLTPLFELDIEQIKTRMYTPRADLAEDELPIAVKQIHL 302
Query: 604 NRSPIVISNLKVLSSNLMFRYKFDLNCA---FKNIKCASSILNNTYIWKKIFLDYKINNS 660
N+ P I++ K+LS R D A +K +K + +K+ L ++ ++S
Sbjct: 303 NKCPF-ITSAKILSDEHAARLGIDKEFAREQYKRLKLHPELR------EKLALLFEHDDS 355
Query: 661 DLELNIDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFI 719
+ D LY+ F S+ D K+ I+R P+ L+ ++ F++ ++ E++F YRARN+
Sbjct: 356 RATTDPDLMLYSGGFFSQADKAKMEIIRHTLPQNLAALDLQFDDPRIPEMLFRYRARNYP 415
Query: 720 ETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLK--KANEHDTKILNALLMY 776
E L Y+E +RW+++ SR ++ + L++E+LL+ +A+E K+L AL Y
Sbjct: 416 ELLDYEESQRWREFCQSRLADQD--------YVLKLENLLQDTQADETKQKLLAALCHY 466
>gi|126173926|ref|YP_001050075.1| exonuclease I [Shewanella baltica OS155]
gi|386340686|ref|YP_006037052.1| Exodeoxyribonuclease I [Shewanella baltica OS117]
gi|125997131|gb|ABN61206.1| Exodeoxyribonuclease I subunit C [Shewanella baltica OS155]
gi|334863087|gb|AEH13558.1| Exodeoxyribonuclease I [Shewanella baltica OS117]
Length = 472
Score = 357 bits (915), Expect = 3e-95, Method: Composition-based stats.
Identities = 187/474 (39%), Positives = 281/474 (59%), Gaps = 24/474 (5%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+ W+DYETFG N +DRP QFA IRTD+ LN I P YCK APD+LP P A LIT I
Sbjct: 10 SIFWHDYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKQAPDYLPSPEAILITGI 69
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ GIPE +F I+ +F +P T GYN++ FDDE+TR+ F+RN I+PY REW+
Sbjct: 70 TPQLANLKGIPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQ 129
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD+I++++A Y P GI WP K +G PSFKLEHL+ N LSH+KAHDA+SDV A
Sbjct: 130 NGNSRWDIIDLVRACYAFRPEGINWPTKEDGSPSFKLEHLTQANGLSHEKAHDAMSDVYA 189
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LIR P+L+ + LR+K+ V +I +P +++ S+++ +L+ P+
Sbjct: 190 TIAMAKLIREKQPKLYQYYFDLRRKQAVSDQIDVLNMQPLVHVSSKISARNGCTTLISPV 249
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN +I NL D DI +I+ + + ED I + IHLN+ P
Sbjct: 250 AHHPTNKNAVICVNLAMDLTPLFELDIEQIKTRMYTPRADLAEDELPIAVKQIHLNKCPF 309
Query: 609 VISNLKVLSSNLMFRYKFDLNCA---FKNIKCASSILNNTYIWKKIFLDYKINNSDLELN 665
I++ K+LS R D A +K +K + +K+ L ++ ++S +
Sbjct: 310 -ITSAKILSDEHAARLGIDKEFAREQYKRLKLHPELR------EKLALLFEHDDSRATTD 362
Query: 666 IDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
D LY+ F S+ D K+ I+R P+ L+ ++ F++ ++ E++F YRARN+ E L Y
Sbjct: 363 PDLMLYSGGFFSQADKAKMEIIRHTLPQNLAALDLQFDDPRIPEMLFRYRARNYPELLDY 422
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLK--KANEHDTKILNALLMY 776
+E +RW+++ SR ++ + L++E+LL+ + +E K+L AL Y
Sbjct: 423 EESQRWREFCQSRLADQD--------YVLKLENLLQDTQVDETKQKLLAALCHY 468
>gi|392308613|ref|ZP_10271147.1| exonuclease I [Pseudoalteromonas citrea NCIMB 1889]
Length = 489
Score = 356 bits (913), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 186/473 (39%), Positives = 273/473 (57%), Gaps = 9/473 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+ W+DYETFG ++DRP QFA IRTD LN I P++ YCKPAPD+LP P ACLIT I
Sbjct: 18 SIYWHDYETFGATPQKDRPSQFAGIRTDYDLNIIGEPLIEYCKPAPDYLPHPEACLITGI 77
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ +G+ E +F + I F +PGT GYN+I FDDE+TR+ +RN +PYEREW+
Sbjct: 78 TPQHAQKHGLIEAEFMAKIHAQFSRPGTCVAGYNSIRFDDEVTRYSLYRNFYDPYEREWQ 137
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD+I++++A Y L P GI WP K +G PSFKLEHL+ N + H AHDALSDV A
Sbjct: 138 NGNSRWDIIDLVRACYALRPDGIEWPLKEDGTPSFKLEHLTVANGIEHGAAHDALSDVTA 197
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+LI+ P+LF+F +LR KK +L I +P + + + + + P+
Sbjct: 198 TIDLAKLIKTKQPKLFDFFFNLRNKKALLDIIDVFNMQPLVHTSSRIPATQGCTTWVAPM 257
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE-DIPIS--MIHLNRSPI 608
HP NKN ++ +NL +P+ L + ++R+ L K+ E D+P+ ++H+N+ PI
Sbjct: 258 SFHPSNKNAVVCFNLTENPQVLLDLSVAELRERLYTKRVDMAEGDLPVGLKLVHVNKCPI 317
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
+ +L N R D ++K ++F + + N D
Sbjct: 318 LAPAKTLLPENAA-RLGIDREQCLTHLKVLKEHPELRDKVAEVFNEQ--GDFSATTNPDY 374
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
+LYN FISK D K A++R P L +N FE+ K ++F YRARN+ E LS EL
Sbjct: 375 QLYNGFISKSDKAKFAVVRDAQPSALGALNLEFEDAKFTTMLFRYRARNWPELLSPSELD 434
Query: 729 RWKKYRISRFYNKKNNLY-NINMFYLEIESLLKK--ANEHDTKILNALLMYGK 778
W+KY ++ + ++N + F L +E+L+ + NE + +L +L Y +
Sbjct: 435 SWRKYCQNKLMHGEDNPSISAEDFMLTLENLVHENDGNEKNLNVLKSLYHYAQ 487
>gi|418026136|ref|ZP_12665109.1| Exodeoxyribonuclease I [Shewanella baltica OS625]
gi|353534569|gb|EHC04138.1| Exodeoxyribonuclease I [Shewanella baltica OS625]
Length = 472
Score = 355 bits (910), Expect = 2e-94, Method: Composition-based stats.
Identities = 186/474 (39%), Positives = 282/474 (59%), Gaps = 24/474 (5%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+ W+DYETFG N +DRP QFA IRTD+ LN I P YCK APD+LP P A LIT I
Sbjct: 10 SIFWHDYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKQAPDYLPSPEAILITGI 69
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+PE +F I+ +F +P T GYN++ FDDE+TR+ F+RN I+PY REW+
Sbjct: 70 TPQLANLKGVPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQ 129
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD+I++++A Y P GI WP K +G PSFKLEHL+ N LSH+KAHDA+SDV A
Sbjct: 130 NGNSRWDIIDLVRACYAFRPEGINWPTKEDGSPSFKLEHLTQANGLSHEKAHDAMSDVYA 189
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LIR P+L+ + LR+K+ V +I +P +++ S+++ +L+ P+
Sbjct: 190 TIAMAKLIREKQPKLYQYYFDLRRKQAVSDQIDVLNMQPLVHVSSKISARNGCTTLISPV 249
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN +I NL D DI +I+ + + ED I + IHLN+ P
Sbjct: 250 AHHPNNKNAVICVNLAMDLTPLFELDIEQIKTRMYTPRADLAEDELPIAVKQIHLNKCPF 309
Query: 609 VISNLKVLSSNLMFRYKFDLNCA---FKNIKCASSILNNTYIWKKIFLDYKINNSDLELN 665
I++ K+LS R D A +K +K + +K+ L ++ ++S +
Sbjct: 310 -ITSAKILSDEHAARLGIDKEFAREQYKRLKLHPELR------EKLALLFEHDDSRATTD 362
Query: 666 IDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
D LY+ F S+ D K+ I+R P+ L+ ++ F++ ++ E++F YRARN+ E L Y
Sbjct: 363 PDLMLYSGGFFSQADKAKMEIIRHTLPQNLAALDLQFDDPRIPEMLFRYRARNYPELLDY 422
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLK--KANEHDTKILNALLMY 776
+E +RW+++ +R ++ + L++E+LL+ +A+E K+L AL Y
Sbjct: 423 EESQRWREFCQNRLADQD--------YVLKLENLLQDTQADETKQKLLAALCHY 468
>gi|386288507|ref|ZP_10065648.1| exonuclease I [gamma proteobacterium BDW918]
gi|385278523|gb|EIF42494.1| exonuclease I [gamma proteobacterium BDW918]
Length = 479
Score = 355 bits (910), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 184/474 (38%), Positives = 271/474 (57%), Gaps = 9/474 (1%)
Query: 309 GNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLI 368
N TF W+DYET+G N RDRP QFA +RTD LN ID P+M++ +P+PD+LP P ACLI
Sbjct: 2 ANQTFYWHDYETWGANPARDRPVQFAGVRTDADLNIIDEPLMVFSRPSPDYLPHPEACLI 61
Query: 369 TKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYER 428
T ITPQ L +G+ E +F +I+ +PGT VGYN+I FDDE+TR+ +RN +PY R
Sbjct: 62 TGITPQQALQDGVSEAEFIAIVHAELSQPGTCGVGYNSIRFDDEVTRYTLYRNFFDPYAR 121
Query: 429 EWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSD 488
EW+N SRWDLI+V + L P GI WP + +G PSF+LE LS N LSH+ AHDALSD
Sbjct: 122 EWQNGNSRWDLIDVARLCRALRPEGIEWPVREDGTPSFRLEELSAANGLSHESAHDALSD 181
Query: 489 VRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLM 548
V AT+ LA+L++ P+LF++ LSLR K+ V A + P +++ + +LM
Sbjct: 182 VYATIDLAKLLKARQPKLFDYALSLRDKRTVAAMLDTVTQVPVLHVSGRLPASKFCSALM 241
Query: 549 WPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNR 605
P+ +HP NKN +I ++L DP+ + + +I + E IP+ IH+NR
Sbjct: 242 MPLALHPDNKNSVIVYDLSVDPQPLIDLSVEEISARVFSATADLPEGAERIPLKEIHINR 301
Query: 606 SPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELN 665
+PIV + K+L + R + D+ +N + + T +K+F K S +
Sbjct: 302 APIV-ATAKLLDDAVCERLQLDMAQCRRNWQRIRKSGDLTAKLQKLFGGRKFAESS---D 357
Query: 666 IDEELY-NNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
D LY F S +D + +RS P+ L+ +F F +++L EL++ YRARN+ TL+
Sbjct: 358 PDVMLYGGGFFSGEDRHLMDSVRSSDPESLAGQSFPFRDQRLPELLWRYRARNYPATLTG 417
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESL-LKKANEHDTKILNALLMYG 777
E ++W ++ R + F + L L++ + D ILN L Y
Sbjct: 418 AERQQWLEFCRRRLRQPEPGQLGFAEFRQRLGELALERNSSTDAMILNELSEYA 471
>gi|294141308|ref|YP_003557286.1| exodeoxyribonuclease I [Shewanella violacea DSS12]
gi|293327777|dbj|BAJ02508.1| exodeoxyribonuclease I [Shewanella violacea DSS12]
Length = 470
Score = 354 bits (909), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 183/478 (38%), Positives = 282/478 (58%), Gaps = 18/478 (3%)
Query: 305 LLHNGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPR 364
+ H+ N T W+DYETFG N +DRP QFA IRTD+ LN + P+ YCK A D+LP P
Sbjct: 1 MAHSSNHTIFWHDYETFGANPSKDRPSQFAGIRTDMDLNIVSEPVTFYCKVANDYLPSPE 60
Query: 365 ACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLIN 424
A LIT ITPQ G+PE +F + + + F +P T GYN+I FDDE+TRF F+RN I+
Sbjct: 61 AILITGITPQLANLKGMPETEFMAKVNEQFSQPNTCVAGYNSIRFDDEVTRFGFYRNFID 120
Query: 425 PYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHD 484
PY REW+ SRWD+I++++A Y P GI WP K +G PSFKLEHL+ N LSH+KAHD
Sbjct: 121 PYAREWQKGNSRWDIIDLVRACYAFRPEGIEWPLKEDGTPSFKLEHLTKANGLSHEKAHD 180
Query: 485 ALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSY 544
A+SDV AT+ +A+LI+ P+LF++ LR+K+ V ++ +P +++ S++H
Sbjct: 181 AMSDVYATIDMAKLIKQKQPKLFDYYFQLRRKQEVSKQLDVLNMQPLVHVSSKISAEHGC 240
Query: 545 ISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED-IPISM--I 601
+L+ P+ H NKN +I NL D + D +IRD + +++ D +PIS+ I
Sbjct: 241 TTLIAPVAHHSTNKNAIICVNLAMDISPLIELDAEQIRDRMYTRRDDLAADELPISVKQI 300
Query: 602 HLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSD 661
H+N+ P V S K+L+ L R D A + K + + + +K+ + + + +
Sbjct: 301 HINKCPFVTSP-KILTDELAQRLNIDKAFAREQYKL---LKQHPELREKLVAVFDVEHDN 356
Query: 662 LELNIDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIE 720
+ D +LY+ F S D K+ I+R P+ L+ + F F++++L+E++F YRARN+
Sbjct: 357 ASQDPDFQLYSGGFFSSADKEKMEIIRHTLPQNLAALEFNFDDQRLKEMLFRYRARNYPA 416
Query: 721 TLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKA--NEHDTKILNALLMY 776
TL E +W+ + +R + + + + +E+L+ NE K+L AL Y
Sbjct: 417 TLDESESMKWRDFCQTRLDDPE--------YMIRLENLVNDTTDNEDKQKLLTALCHY 466
>gi|399545711|ref|YP_006559019.1| Exodeoxyribonuclease I [Marinobacter sp. BSs20148]
gi|399161043|gb|AFP31606.1| Exodeoxyribonuclease I [Marinobacter sp. BSs20148]
Length = 507
Score = 354 bits (909), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 173/477 (36%), Positives = 281/477 (58%), Gaps = 14/477 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF W+DYETFG++ DRP QFA +RTD LN I+ P++++C+PA D+LP P ACLIT I
Sbjct: 29 TFYWHDYETFGVDPLHDRPCQFAGVRTDSELNIIEEPLVIFCRPADDYLPAPEACLITGI 88
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G PE +F ++I F +PGT VGYN++ FDDE+TR +RNL++PY REW+
Sbjct: 89 TPQQATQEGYPEAEFITMINSAFSQPGTCVVGYNSLRFDDEVTRNTLYRNLLDPYGREWQ 148
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDLI+V++ + L P GI WP K +G PSF+LE L+ N L H +AHDA+SDV A
Sbjct: 149 NGNSRWDLIDVVRLAHTLRPDGIEWPLKPDGSPSFRLEDLARANGLEHGQAHDAMSDVTA 208
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
TL LARLI+ PRLF F L+ + K+ + +P F+++ + + +L+ P+
Sbjct: 209 TLALARLIKERQPRLFEFALANKSKQAARKMLDTSTRKPVFHVSGKYPASQGSCALVAPV 268
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLNRSPI 608
H NKN +I ++L +P + + + KIR+ + +++ E + P+ I LN+ P+
Sbjct: 269 AEHASNKNQVIVYDLRENPDELINASVEKIRERVFTAQSALPEGVRRFPLKAIQLNKCPV 328
Query: 609 V--ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTY--IWKKIFLDYKINNSDLEL 664
+ + L LS + + LN + ++ +IL +++ ++ ++ +
Sbjct: 329 LAPATMLAALSPERLQQ----LNLDGEQMRRHLAILRQAGPDFGQRVAAAFERDHDNKLT 384
Query: 665 NIDEELY-NNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
+ DE++Y F S D ++ +++P++L+ F F + +L E++F YRARN+ +TLS
Sbjct: 385 DPDEQIYAGGFFSPSDRSQMDRALAITPQQLAESEFQFTDPRLAEMLFRYRARNYPDTLS 444
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKAN--EHDTKILNALLMYGK 778
E++RW+++R R ++ + E++ L+ K + IL L +YG+
Sbjct: 445 ADEMERWEQFREQRLTQPAKGWLSLAEYGAELQRLMAKPDVTRQQLHILEELHLYGE 501
>gi|104780361|ref|YP_606859.1| exonuclease I [Pseudomonas entomophila L48]
gi|95109348|emb|CAK14048.1| exonuclease I [Pseudomonas entomophila L48]
Length = 476
Score = 354 bits (908), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 174/471 (36%), Positives = 273/471 (57%), Gaps = 18/471 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+S+ W+DYET G+N R DRP Q A +RTD+ LN I+ PI LYC+P+ D LP P ACL+T
Sbjct: 2 SSSIFWHDYETTGINPRCDRPLQMAGVRTDLDLNEIEAPINLYCRPSDDILPHPAACLVT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ + G+ E +F + + +PGT GYNT+ FDDE+TR+ +RN +PY RE
Sbjct: 62 GITPQQLASQGLCEAEFMTRVHTELARPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI+V++ Y L P GI WP + +G+ S +LE LS N + H AH+ALSDV
Sbjct: 122 WQGGNSRWDLIDVVRTAYALRPEGIVWP-QQDGRTSLRLELLSKANGIDHGHAHEALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+GLARLIR+ P+L++++ LR K V+ ++ + +P +++ FS++ +YI ++
Sbjct: 181 RATIGLARLIRDRQPKLYDWLFQLRSKHKVMEQVR--LLQPLVHVSGRFSAERNYIGVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L D L +R L ++ E +P+ ++H+NR
Sbjct: 239 PLAWHPRNRNALIVCDLGQDSAPLLKESAQVLRQRLYTRREDMAEGELPVPLKLVHINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK----IFLDYKINNSDL 662
P V++ L V+ + R D++ + A + N W+ IF + ++
Sbjct: 299 P-VVAPLSVIRAQDQQRLGIDMSTLQSH---ADHLANQQATWRDKLDIIFEEEAFAPTE- 353
Query: 663 ELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
+ +++LY+ FI +D +R + P +L ++ F++ +L EL+F YRARNF +TL
Sbjct: 354 --DPEQQLYDGFIGDRDRRLCEQVRGVDPAQLGQGHWMFDDPRLPELLFRYRARNFADTL 411
Query: 723 SYKELKRWKKYRISRFYNKKNNLYN-INMFYLEIESLLKKANEHDTKILNA 772
+EL RW + R + K N + F + +S L A+E ++L A
Sbjct: 412 DEQELARWHGFCRERLSDPKWGAPNTLGDFEVACQSSLANADEAGRRVLEA 462
>gi|126667153|ref|ZP_01738127.1| exonuclease I [Marinobacter sp. ELB17]
gi|126628309|gb|EAZ98932.1| exonuclease I [Marinobacter sp. ELB17]
Length = 507
Score = 353 bits (907), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 172/477 (36%), Positives = 281/477 (58%), Gaps = 14/477 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF W+DYETFG++ DRP QFA +RTD LN I+ P++++C+PA D+LP P ACLIT I
Sbjct: 29 TFYWHDYETFGVDPLHDRPCQFAGVRTDSELNIIEEPLVIFCRPADDYLPAPEACLITGI 88
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G PE +F ++I F +PGT VGYN++ FDDE+TR +RNL +PY REW+
Sbjct: 89 TPQQATQEGYPEAEFITMINSAFSQPGTCVVGYNSLRFDDEVTRNTLYRNLRDPYGREWQ 148
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDLI+V++ Y L P GI WP K +G PSF+LE L+ N L H +AHDA+SDV A
Sbjct: 149 NGNSRWDLIDVVRLAYTLRPEGIEWPLKPDGSPSFRLEDLARANGLEHGQAHDAMSDVTA 208
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
TL LARLI+ PRLF F + + K+ + +P F+++ + + +L+ P+
Sbjct: 209 TLALARLIKERQPRLFEFARANKSKQAARKMLDTSTRKPVFHVSGKYPASQGSCALVAPV 268
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLNRSPI 608
H NKN +I ++L +P + + +++IR+ + +++ E + P+ I LN+ P+
Sbjct: 269 AEHASNKNQVIVYDLRENPDELINASVDQIRERVFTAQSALPEGVRRFPLKAIQLNKCPV 328
Query: 609 V--ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTY--IWKKIFLDYKINNSDLEL 664
+ + L LS + + LN + ++ +IL +++ ++ +
Sbjct: 329 LAPATMLAALSPERLQQ----LNLDGEQMRRHLAILRQAGPDFGQRVAAAFERDYDTKLT 384
Query: 665 NIDEELY-NNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
+ DE++Y F S D +L +++P++L+ F F +++L E++F YRARN+ +TLS
Sbjct: 385 DPDEQIYAGGFFSPSDRTQLDRALAITPQQLAESEFQFTDQRLAEMLFRYRARNYPDTLS 444
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKAN--EHDTKILNALLMYGK 778
++++RW+++R R ++ + E++ L+ K + + IL L +YG+
Sbjct: 445 GEDMERWEQFREQRLTQPAKGWLSLAEYGAELQRLMAKPDVTQQQRHILEELHLYGE 501
>gi|407802964|ref|ZP_11149803.1| exonuclease I [Alcanivorax sp. W11-5]
gi|407023124|gb|EKE34872.1| exonuclease I [Alcanivorax sp. W11-5]
Length = 482
Score = 352 bits (904), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 176/475 (37%), Positives = 271/475 (57%), Gaps = 15/475 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF W+DYET+G N DRP QFA +RTD LN I P+MLY +P PD+LP P ACLIT +
Sbjct: 5 TFFWHDYETWGANPSVDRPSQFAGVRTDADLNVIGEPLMLYSRPTPDYLPHPEACLITGL 64
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L GIPE F + I + +PGT VGYN+I FDDE+TRF +RN +PY REW+
Sbjct: 65 TPQHVLEEGIPEAAFIARIHQELSQPGTCGVGYNSIRFDDEVTRFTLYRNFHDPYAREWQ 124
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDLI+V++ + L P GI WP + +G PSFKLE L+ N LSH+ AHDALSDV A
Sbjct: 125 NGNSRWDLIDVVRLCHALRPDGIQWPQREDGTPSFKLELLTQANGLSHEAAHDALSDVYA 184
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+L+R+ P+LF + L LR K+ V ++ P +++ + +L+ P+
Sbjct: 185 TIALAKLLRDRQPKLFEYALGLRFKQAVAEQLNLVTQAPVLHVSGRIPAARFCSALVMPL 244
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED----IPISMIHLNRSP 607
HP N+N +I ++L DP L + I+ + + + IP+ IH+NR+P
Sbjct: 245 MAHPTNRNSVIVYDLATDPTPLLEGSVEDIQRQVFSSAAALEAQDEARIPLKEIHINRAP 304
Query: 608 IVISNLKVLSSNLMFRYKFDLNCA---FKNIKCASSILNNTYIWKKIFLDYKINNSDLEL 664
V++ +K++ + R + D++ ++ ++ L K++F +
Sbjct: 305 -VVATVKLVDDAVAARLQLDMDACRRHWQRLRQGGDALRARL--KEVFGARDFTE---QT 358
Query: 665 NIDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
+ D LY+ F S D + +R P +L+ +F FE+++L E+++ YRARN+ ETLS
Sbjct: 359 DPDSMLYSGGFFSDADRQLMHRIRETPPSELARQSFPFEDRRLPEMLWRYRARNYPETLS 418
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK-ILNALLMYG 777
+EL W+++ R + +++ F + +L + + + IL+ L Y
Sbjct: 419 PQELADWRQFCAERLRDADPARLSLSAFRERLGALAAEVEDDKGRFILHELSEYA 473
>gi|77360198|ref|YP_339773.1| exonuclease I [Pseudoalteromonas haloplanktis TAC125]
gi|76875109|emb|CAI86330.1| exodeoxyribonuclease I [Pseudoalteromonas haloplanktis TAC125]
Length = 481
Score = 351 bits (901), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 184/479 (38%), Positives = 278/479 (58%), Gaps = 17/479 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+T W+DYET+G + ++D+P QFA +RTD+ LN I P++ YCKP D+LP P ACLIT
Sbjct: 8 QATIYWHDYETWGASPQKDKPSQFAGVRTDLDLNIIGEPLIEYCKPQADYLPHPEACLIT 67
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ + G+ E +F + I F P T GYN+I FDDE++R+ F+RN +PYERE
Sbjct: 68 GITPQVAMKKGLVEAEFIAKIHAQFSVPNTCVAGYNSIRFDDEVSRYSFYRNFYDPYERE 127
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
+KNN SRWD+I++++A Y L P GI WP K +G PSFKLEHL+ N + H AHDALSDV
Sbjct: 128 YKNNNSRWDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIEHAAAHDALSDV 187
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ LA+LI++ P+L+NF SLR KK + + P + + + S +
Sbjct: 188 TATIALAKLIKDKQPKLYNFFFSLRGKKALAELVDVFNMTPLVHTSSRIPATQGCTSWVA 247
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP+NKN +I ++L P+ + + ++R L K+ ED + + ++HLN+
Sbjct: 248 PMSFHPVNKNAVICFDLTQSPQVLIDLSVEQLRKRLYTKRIDLAEDELPVGLKLVHLNKC 307
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDLELN 665
PI+ +L N R D KN+ + N+ + K+ + + + N
Sbjct: 308 PILAPAKTLLPENAA-RLGIDREQCLKNLAVLKA---NSELRDKVTEVFNEQGDYSATTN 363
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D LY+ F S D K AI+R P+ L+++ FENKK L+F YRARN+ +TL+ +
Sbjct: 364 VDYLLYDGFTSHADKAKFAIIRDAKPEDLADLKLDFENKKFNTLLFRYRARNWPQTLNQQ 423
Query: 726 ELKRWKKYRISRFYNKKNNLY-NINMFYLEIESLLKKANEHDTK-----ILNALLMYGK 778
EL +W++Y ++ + ++ N F + +E+L A+EHD IL AL Y +
Sbjct: 424 ELDQWRQYCQNKLMHGEDQPSINAQDFMITLENL---AHEHDDSEKNLTILKALYNYAQ 479
>gi|160874834|ref|YP_001554150.1| exonuclease I [Shewanella baltica OS195]
gi|378708084|ref|YP_005272978.1| Exodeoxyribonuclease I [Shewanella baltica OS678]
gi|160860356|gb|ABX48890.1| Exodeoxyribonuclease I [Shewanella baltica OS195]
gi|315267073|gb|ADT93926.1| Exodeoxyribonuclease I [Shewanella baltica OS678]
Length = 472
Score = 351 bits (900), Expect = 2e-93, Method: Composition-based stats.
Identities = 185/474 (39%), Positives = 281/474 (59%), Gaps = 24/474 (5%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+ W+DYETFG N +DRP QFA IRTD+ LN I P YCK APD+LP P A LIT I
Sbjct: 10 SIFWHDYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKQAPDYLPSPEAILITGI 69
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+PE +F I+ +F +P T GYN++ FDDE+TR+ F+RN I+PY REW+
Sbjct: 70 TPQLANLKGVPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQ 129
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD+I++++A Y P GI WP K +G PSFKLEHL+ N LSH+KAHDA+SDV A
Sbjct: 130 NGNSRWDIIDLVRACYAFRPEGINWPTKEDGSPSFKLEHLTQANGLSHEKAHDAMSDVYA 189
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LIR P+L+ + LR+K+ V +I +P +++ S+++ +L+ +
Sbjct: 190 TIAMAKLIREKQPKLYQYYFDLRRKQAVSDQIDVLNMQPLVHVSSKISARNGCTTLISTV 249
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN +I NL D DI +I+ + + ED I + IHLN+ P
Sbjct: 250 AHHPNNKNAVICVNLAMDLTPLFELDIEQIKTRMYTPRADLAEDELPIAVKQIHLNKCPF 309
Query: 609 VISNLKVLSSNLMFRYKFDLNCA---FKNIKCASSILNNTYIWKKIFLDYKINNSDLELN 665
I++ K+LS R D A +K +K + +K+ L ++ ++S +
Sbjct: 310 -ITSAKILSDEHAARLGIDKEFAREQYKRLKLHPELR------EKLALLFEHDDSRATTD 362
Query: 666 IDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
D LY+ F S+ D K+ I+R P+ L+ ++ F++ ++ E++F YRARN+ E L Y
Sbjct: 363 PDLMLYSGGFFSQADKAKMEIIRHTLPQNLAALDLQFDDPRIPEMLFRYRARNYPELLDY 422
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLK--KANEHDTKILNALLMY 776
+E +RW+++ +R ++ + L++E+LL+ +A+E K+L AL Y
Sbjct: 423 EESQRWREFCQNRLADQD--------YVLKLENLLQDTQADETKQKLLAALCHY 468
>gi|392533607|ref|ZP_10280744.1| exonuclease I [Pseudoalteromonas arctica A 37-1-2]
Length = 483
Score = 350 bits (899), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 187/482 (38%), Positives = 277/482 (57%), Gaps = 17/482 (3%)
Query: 307 HNGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRAC 366
H T W+DYET+G + ++D+P QFA IRTD+ LN I P++ YCKP D+LP P AC
Sbjct: 7 HETQPTIYWHDYETWGASPQKDKPSQFAGIRTDLDLNIIGEPLIEYCKPQADYLPHPEAC 66
Query: 367 LITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPY 426
LIT ITPQ + G+ E +F + I F P T GYN+I FDDE++R+ F+RN +PY
Sbjct: 67 LITGITPQVAMKKGLVEAEFIAKIHAEFSVPNTCVAGYNSIRFDDEVSRYSFYRNFYDPY 126
Query: 427 EREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDAL 486
ERE+KNN SRWD+I++++A Y L P GI WP K +G PSFKLEHL+ N + H AHDAL
Sbjct: 127 EREYKNNNSRWDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIEHAAAHDAL 186
Query: 487 SDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYIS 546
SDV AT+ LA+LI+ P+L+NF LR KK + + P + T + S
Sbjct: 187 SDVTATIALAKLIKEKQPKLYNFFFGLRNKKALAELVDVFNMTPLVHTTSRIPATQGCTS 246
Query: 547 LMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE-DIPIS--MIHL 603
+ P+ HP+NKN +I ++L +P+ + ++ ++R L K+ E D+P+ ++HL
Sbjct: 247 WVAPMSFHPVNKNAVICFDLTQNPQVLIDLNVEELRKRLYTKRVDLAEDDLPVGLKLVHL 306
Query: 604 NRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDL 662
N+ PI+ +L N R D N+ + NT + K+ + + +
Sbjct: 307 NKCPILAPAKTLLPENAA-RLGIDREQCLANLAILKA---NTDLRDKVTEVFNEQGDYSA 362
Query: 663 ELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
N+D LY+ F S D K AI+R P +L+ + FE+KK L+F YRARN+ ETL
Sbjct: 363 TTNVDYLLYDGFTSHADKAKFAIIRDAKPDELAGLKLDFEDKKFNTLLFRYRARNWPETL 422
Query: 723 SYKELKRWKKYRISRFYNKKNNLY-NINMFYLEIESLLKKANEHDTK-----ILNALLMY 776
+ +EL +W++Y ++ + ++ N F + +E+L A+EHD IL AL Y
Sbjct: 423 NQQELDQWRQYCQNKLMHGEDQPSINAQDFMITLENL---AHEHDDSEKNLTILKALYNY 479
Query: 777 GK 778
+
Sbjct: 480 AQ 481
>gi|119775108|ref|YP_927848.1| exonuclease I [Shewanella amazonensis SB2B]
gi|119767608|gb|ABM00179.1| Exodeoxyribonuclease I subunit C [Shewanella amazonensis SB2B]
Length = 470
Score = 350 bits (899), Expect = 3e-93, Method: Composition-based stats.
Identities = 183/471 (38%), Positives = 273/471 (57%), Gaps = 18/471 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
T W+DYETFG + +DRP QFA +RTD+ LN ID P+ YC+ +PD+LP P A LIT I
Sbjct: 8 TIFWHDYETFGASPAKDRPAQFAGVRTDLDLNIIDEPVTFYCRLSPDYLPAPEAILITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+PE +F I+ IF +P T GYN++ FDDE++R+ F+RN I+PY REW+
Sbjct: 68 TPQLANRQGLPETEFMGRIQAIFSRPNTCVAGYNSLRFDDEVSRYGFYRNFIDPYAREWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
SRWD+I++++A Y L P GI WP K +G PSFKLEHL+ N L H KAHDA+SDV A
Sbjct: 128 QGNSRWDIIDLVRACYALRPEGINWPEKEDGSPSFKLEHLTAANGLGHDKAHDAMSDVYA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LARLI+ P+LF++ LR+K+ V +I +P +I+ + +L+ P+
Sbjct: 188 TIALARLIKEKQPKLFDYYFRLRRKQAVAEQIDVLAMQPLVHISSKIPATQGCATLIAPV 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
H NKN +I NL D + + D++ +R L K+ D +P+ IHLN+ P
Sbjct: 248 AHHMRNKNAVICVNLAMDIQPLIDLDVDALRTRLYTKREDLANDELPVPVKQIHLNKCPF 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
V +N K L R D A + + + + I +K+ ++ + + D
Sbjct: 308 V-ANAKTLDDANAERLGIDKAFAREQYRL---LKQHPEIREKLTALFEEEPQGMSNDPDY 363
Query: 669 ELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY+ F S D K+ I+R+ SP+ L+ + F++ +L E++F YRARN+ TLSY E
Sbjct: 364 SLYSGGFFSPADRAKMDIIRNTSPEHLAALELQFDDTRLPEMLFRYRARNYPLTLSYDES 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKA--NEHDTKILNALLMY 776
RW+++ +R N + + +E+LL++ +E K+L AL Y
Sbjct: 424 LRWREFCQARL--------NDPDYVIRLENLLEETTKDEKKQKLLGALCQY 466
>gi|398973779|ref|ZP_10684621.1| exonuclease I [Pseudomonas sp. GM25]
gi|398142731|gb|EJM31624.1| exonuclease I [Pseudomonas sp. GM25]
Length = 476
Score = 350 bits (899), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 178/465 (38%), Positives = 269/465 (57%), Gaps = 11/465 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ WYDYET G+N R DRP Q A IRTD LN ID P+ LYC+P+ D LP P AC IT
Sbjct: 2 TSIFWYDYETTGINPRCDRPLQVAGIRTDHELNEIDAPVNLYCQPSEDILPHPAACAITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPSRLAEQGLSEADFMTRVHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+V++A Y L P G+ WP + GK + KLE L+ NN+ H AH+ALSDVR
Sbjct: 122 QGGNSRWDLIDVVRAAYALRPDGLVWPTDDEGKVTLKLERLTAANNIDHGNAHEALSDVR 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARLIR P+L++++ LR K+ V+ +I + +P +I+ FS+ SY+ ++ P
Sbjct: 182 ATIALARLIREKQPKLYDWLFQLRSKQKVMDQIR--LLQPMVHISGRFSAARSYVGVVLP 239
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP NKN LI +L DP+ L D +R L +++ E +P+ +IH+N+ P
Sbjct: 240 LAWHPRNKNALIVCDLHLDPQGLLDLDAETLRQRLYTRRDDLAEGELPVPLKLIHINKCP 299
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELNI 666
V++ L VL + R D+ A + A + + +WK K+ Y + +
Sbjct: 300 -VVAPLSVLRAEDQQRLGLDM--ALYQAR-ALRLSDAQQVWKDKVSAIYASEDFTSSEDP 355
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+++LY+ FI +D +R+ P +L+ ++ F++++L EL+F YRARNF +TL+++E
Sbjct: 356 EQQLYDGFIGDRDRRLCEQVRTTDPAQLAREHWPFDDERLPELLFRYRARNFPDTLNFEE 415
Query: 727 LKRWKKYRISRFYNKKNNLYN-INMFYLEIESLLKKANEHDTKIL 770
+RWK + R + N + F +E L A ++L
Sbjct: 416 QERWKTFCRQRLSAPEWGAPNTLQSFAEAMEQWLLSAAPMQAEVL 460
>gi|359453712|ref|ZP_09243020.1| exodeoxyribonuclease I [Pseudoalteromonas sp. BSi20495]
gi|358049286|dbj|GAA79269.1| exodeoxyribonuclease I [Pseudoalteromonas sp. BSi20495]
Length = 483
Score = 350 bits (898), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 186/479 (38%), Positives = 278/479 (58%), Gaps = 17/479 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+T W+DYET+G + ++D+P QFA IRTD+ LN I P++ YCKP D+LP P ACLIT
Sbjct: 10 QATIYWHDYETWGASPQKDKPSQFAGIRTDLDLNIIGEPLIEYCKPQADYLPHPEACLIT 69
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ + G+ E +F + I F P T GYN+I FDDE++R+ F+RN +PYERE
Sbjct: 70 GITPQVAMKKGLVEAEFIAKIHAEFSVPNTCVAGYNSIRFDDEVSRYSFYRNFYDPYERE 129
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
+KNN SRWD+I++++A Y L P GI WP K +G PSFKLEHL+ N + H AHDALSDV
Sbjct: 130 YKNNNSRWDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIEHAAAHDALSDV 189
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ LA+LI+ P+L+NF LR KK + + P + T + S +
Sbjct: 190 TATIALAKLIKEKQPKLYNFFFGLRNKKALAELVDVFNMTPLVHTTSRIPATQGCTSWVA 249
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE-DIPIS--MIHLNRS 606
P+ HP+NKN +I ++L +P+ + ++ ++R L K+ E D+P+ ++HLN+
Sbjct: 250 PMSFHPVNKNAVICFDLTQNPQVLIDLNVEELRKRLYTKRVDLAEGDLPVGLKLVHLNKC 309
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDLELN 665
PI+ +L N R D N+ + NT + K+ + + + N
Sbjct: 310 PILAPAKTLLPENAA-RLGIDREQCLANLAILKA---NTNLRDKVTEVFNEKGDYSATTN 365
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D LY+ F S D K AI+R P +L+ + FE+KK + L+F YRARN+ ETL+ +
Sbjct: 366 VDYLLYDGFTSHADKAKFAIIRDAEPDELAGLKLDFEDKKFDTLLFRYRARNWPETLNQQ 425
Query: 726 ELKRWKKYRISRFYNKKNNLY-NINMFYLEIESLLKKANEHDTK-----ILNALLMYGK 778
EL +W++Y ++ + ++ N F + +E+L A+EHD IL AL Y +
Sbjct: 426 ELDQWRQYCQNKLMHGEDQPSINAQDFMITLENL---AHEHDDSEKNLTILKALYNYAQ 481
>gi|398983978|ref|ZP_10690329.1| exonuclease I [Pseudomonas sp. GM24]
gi|399013232|ref|ZP_10715543.1| exonuclease I [Pseudomonas sp. GM16]
gi|398114356|gb|EJM04183.1| exonuclease I [Pseudomonas sp. GM16]
gi|398156319|gb|EJM44740.1| exonuclease I [Pseudomonas sp. GM24]
Length = 476
Score = 350 bits (897), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 169/425 (39%), Positives = 255/425 (60%), Gaps = 10/425 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ WYDYET G+N R DRP Q A IRTD LN ID P+ LYC+P+ D LP P AC IT
Sbjct: 2 TSIFWYDYETTGINPRNDRPLQVAGIRTDHALNEIDEPVNLYCQPSEDILPHPAACAITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPSQLAEKGLSEADFMTRVHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+V++A Y L P G+ WP + G+ + KLE L+ NN+ H AH+ALSDVR
Sbjct: 122 QGGNSRWDLIDVVRAAYALRPDGLVWPTDDEGRVTLKLERLTAANNIDHGHAHEALSDVR 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARLIR P+L++++ LR K+ V+ +I + +P +++ FS+ SY+ ++ P
Sbjct: 182 ATIALARLIREKQPKLYDWLFQLRSKQKVMDQIR--LLQPLVHVSGRFSAARSYVGVVLP 239
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP N+N LI +L DP+ L D +R+ L +++ E +P+ +IH+NR P
Sbjct: 240 LAWHPKNRNALIVCDLHLDPQGLLDLDAQTLRERLYTRRDDLLEGELPVPLKLIHINRCP 299
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELNI 666
V++ L VL + R D+ + A + + +WK K+ Y + +
Sbjct: 300 -VVAPLAVLRAQDQQRLGLDMALYQQR---ALRLTDAQQVWKDKVAEIYVSEDFIPSEDP 355
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+++LY+ FI +D +RS P +L+ + F++++L EL+F YRARNF ETL+++E
Sbjct: 356 EQQLYDGFIGDRDRRLCEQVRSADPSQLAQEQWPFDDERLPELLFRYRARNFPETLNFEE 415
Query: 727 LKRWK 731
+RW+
Sbjct: 416 QERWR 420
>gi|251789913|ref|YP_003004634.1| exonuclease I [Dickeya zeae Ech1591]
gi|247538534|gb|ACT07155.1| Exodeoxyribonuclease I [Dickeya zeae Ech1591]
Length = 476
Score = 349 bits (896), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 177/472 (37%), Positives = 272/472 (57%), Gaps = 13/472 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF +DYETFG + +DRP QFA +RTD+ N I P+++YC+PA D+LPDP+A +IT I
Sbjct: 9 TFFVHDYETFGKHPAKDRPAQFAGVRTDLNFNVIGEPVVIYCQPADDYLPDPQAVMITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + GI E +FA I + F PGT +GYN I FDDE++R +F+RN I+PY W+
Sbjct: 69 TPQIAQSRGIRETEFARHIHEAFSVPGTCIMGYNNIRFDDEVSRNLFYRNFIDPYAYSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI WP ++G PSF+LEHL+ N + H +AHDA+SDV A
Sbjct: 129 NGNSRWDLLDMLRACYALRPDGIVWPENDDGFPSFRLEHLTRANGVEHTQAHDAMSDVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +ARL++ P+LF+++ LR K V A I P +P +++ MF + S + P+
Sbjct: 189 TIAMARLLKQAQPKLFDYLYGLRNKNKVSALIDIPQMKPLVHVSGMFGAARGNTSWIVPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L D + L D +++R L +++ ED +PI ++H+N+ P
Sbjct: 249 AWHPDNRNAVIVCDLAGDIQPLLSLDADELRTRLYTRRDLLAEDESPVPIKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
V++ L R D N++ N++ K + L + ++D
Sbjct: 308 VLAPASTLRPEDAERLGIDRQHCLNNLQLLRQ--NSSVREKVVALFADAPPFEAAKDVDL 365
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
+LY+ F S D +AI+R + L +N F ++++EEL+F YRARNF TL +E +
Sbjct: 366 QLYDGFFSDADRAAMAIIRKTDAQHLPALNLQFADRRVEELLFRYRARNFPGTLDEQEQQ 425
Query: 729 RWKKYRISRFYNKKNNLY--NINMFYLEIESLLKKANEHDTKILNALLMYGK 778
RW +R + F ++ Y +N Y L +E +L AL Y +
Sbjct: 426 RWLAHRRAMFTTERVQDYFDTLNQLY-----QLHDGDEKKAALLKALFAYAQ 472
>gi|344943501|ref|ZP_08782788.1| Exodeoxyribonuclease I [Methylobacter tundripaludum SV96]
gi|344260788|gb|EGW21060.1| Exodeoxyribonuclease I [Methylobacter tundripaludum SV96]
Length = 501
Score = 349 bits (896), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 176/483 (36%), Positives = 279/483 (57%), Gaps = 10/483 (2%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
+G TF W+DYETFG + +RD+P QFA IRTD N +D+P+++YCKPA D LP P ACL
Sbjct: 2 SGTQTFYWHDYETFGTDPQRDKPVQFAGIRTDFDFNVVDDPLVVYCKPAEDCLPHPEACL 61
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
IT ITPQ G+ E +F +I + +P T ++GYN++ FDDE+TR +RN +PY
Sbjct: 62 ITGITPQLAEQKGVCEAEFIRLIHEQLAQPNTCTLGYNSLRFDDEVTRNCLYRNFYDPYA 121
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
REW+N SRWDLI+V++A L P GI WP G PSF+L+ L+ VNN++H+ AHDALS
Sbjct: 122 REWQNGNSRWDLIDVVRATRALRPDGIVWPVNEEGGPSFRLDQLTRVNNIAHEAAHDALS 181
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV ATL + +L++ P+L+ F+L R K L + +P +++ + + + +++
Sbjct: 182 DVYATLAITKLVKQAQPKLYQFLLRHRVKGEALNLLQLGSFKPVVHVSGKYPAVKNCLAV 241
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
+ PIC HP N N +I ++L DP+ L + +I+ + E IP+ +H+N
Sbjct: 242 VLPICKHPTNANGIIVYDLSVDPEPMLGLAVEEIQQRIFTATADLPEGVARIPLKTVHIN 301
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLD--YKINNSDL 662
+ P V++ + V+ R + DL NI + + + +F Y + +SD
Sbjct: 302 KCP-VLAPVSVIRPEDAQRLEIDLALCHANIDKIKAAVGLSENLAAVFSGQAYVVQDSDP 360
Query: 663 ELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
+L I F S+ D ++ +RSM P++L+ F F + +L E++F YRARN+ ETL
Sbjct: 361 DLEI---YSGGFFSENDKKQMIKIRSMQPEQLTKSVFKFTDSRLSEMLFRYRARNYPETL 417
Query: 723 SYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGKIDGS 782
+ EL+RW ++ ++R ++ + Y + L + +TKI++AL Y +D
Sbjct: 418 NTDELRRWNEFCVNRLTGRQAGGGIVLDDYFSRLAELSRDENKNTKIIDALEDYA-LDKM 476
Query: 783 SCI 785
C+
Sbjct: 477 QCL 479
>gi|332535945|ref|ZP_08411647.1| exodeoxyribonuclease I [Pseudoalteromonas haloplanktis ANT/505]
gi|332034679|gb|EGI71232.1| exodeoxyribonuclease I [Pseudoalteromonas haloplanktis ANT/505]
Length = 481
Score = 349 bits (896), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 185/479 (38%), Positives = 276/479 (57%), Gaps = 17/479 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+T W+DYET+G + ++D+P QFA IRTD+ LN I P++ YCKP D+LP P ACLIT
Sbjct: 8 QATIYWHDYETWGASPQKDKPSQFAGIRTDLDLNIIGEPLIEYCKPQADYLPHPEACLIT 67
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ + G+ E +F + I F P T GYN+I FDDE++R+ F+RN +PYERE
Sbjct: 68 GITPQVAMKKGLVEAEFIAKIHAEFSVPNTCVAGYNSIRFDDEVSRYSFYRNFYDPYERE 127
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
+KNN SRWD+I++++A Y L P GI WP K +G PSFKLEHL+ N + H AHDALSDV
Sbjct: 128 YKNNNSRWDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIEHAAAHDALSDV 187
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ LA+LI+ P+L+NF LR KK + + P + T + S +
Sbjct: 188 TATIALAKLIKEKQPKLYNFFFGLRNKKALAELVDVFNMTPLVHTTSRIPATQGCTSWVA 247
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP+NKN +I ++L +P+ + ++ ++R L K+ ED + + ++HLN+
Sbjct: 248 PMSFHPVNKNAVICFDLTQNPQVLIDLNVEELRKRLYTKRVDLAEDDLPVGLKLVHLNKC 307
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDLELN 665
PI+ +L N R D N+ + NT + K+ + + + N
Sbjct: 308 PILAPAKTLLPENAA-RLGIDREQCLANLAILKA---NTDLRDKVTEVFNEQGDYSATTN 363
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D LY+ F S D K AI+R P +L+ + FE+KK L+F YRARN+ ETL+ +
Sbjct: 364 VDYLLYDGFTSHADKAKFAIIRDAKPDELAGLKLDFEDKKFNTLLFRYRARNWPETLNQQ 423
Query: 726 ELKRWKKYRISRFYNKKNNLY-NINMFYLEIESLLKKANEHDTK-----ILNALLMYGK 778
EL +W++Y ++ + ++ N F + +E+L A+EHD IL AL Y +
Sbjct: 424 ELDQWRQYCQNKLMHGEDQPSINAQDFMITLENL---AHEHDDSEKNLTILKALYNYAQ 479
>gi|359440957|ref|ZP_09230866.1| exodeoxyribonuclease I [Pseudoalteromonas sp. BSi20429]
gi|358037218|dbj|GAA67115.1| exodeoxyribonuclease I [Pseudoalteromonas sp. BSi20429]
Length = 481
Score = 349 bits (896), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 185/479 (38%), Positives = 276/479 (57%), Gaps = 17/479 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+T W+DYET+G + ++D+P QFA IRTD+ LN I P++ YCKP D+LP P ACLIT
Sbjct: 8 QATIYWHDYETWGASPQKDKPSQFAGIRTDLDLNIIGEPLIEYCKPQADYLPHPEACLIT 67
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ + G+ E +F + I F P T GYN+I FDDE++R+ F+RN +PYERE
Sbjct: 68 GITPQVAMKKGLVEAEFIAKIHAEFSVPNTCVAGYNSIRFDDEVSRYSFYRNFYDPYERE 127
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
+KNN SRWD+I++++A Y L P GI WP K +G PSFKLEHL+ N + H AHDALSDV
Sbjct: 128 YKNNNSRWDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIEHAAAHDALSDV 187
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ LA+LI+ P+L+NF LR KK + + P + T + S +
Sbjct: 188 TATIALAKLIKEKQPKLYNFFFGLRGKKALAELVDVFNMTPLVHTTSRIPATQGCTSWVA 247
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP+NKN +I ++L +P+ + ++ ++R L K+ ED + + ++HLN+
Sbjct: 248 PMSFHPVNKNAVICFDLTQNPQVLIDLNVEELRKRLYTKRVDLAEDDLPVGLKLVHLNKC 307
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDLELN 665
PI+ +L N R D N+ + NT + K+ + + + N
Sbjct: 308 PILAPAKTLLPENAA-RLGIDREQCLANLAILKA---NTDLRDKVTEVFNEQGDYSATTN 363
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D LY+ F S D K AI+R P +L+ + FE+KK L+F YRARN+ ETL+ +
Sbjct: 364 VDYLLYDGFTSHADKAKFAIIRDAKPDELAGLKLDFEDKKFNTLLFRYRARNWPETLNQQ 423
Query: 726 ELKRWKKYRISRFYNKKNNLY-NINMFYLEIESLLKKANEHDTK-----ILNALLMYGK 778
EL +W++Y ++ + ++ N F + +E+L A+EHD IL AL Y +
Sbjct: 424 ELDQWRQYCQNKLMHGEDQPSINAQDFMITLENL---AHEHDDSEKNLTILKALYNYAQ 479
>gi|359435815|ref|ZP_09225965.1| exodeoxyribonuclease I [Pseudoalteromonas sp. BSi20652]
gi|357917530|dbj|GAA62214.1| exodeoxyribonuclease I [Pseudoalteromonas sp. BSi20652]
Length = 483
Score = 349 bits (895), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 186/479 (38%), Positives = 277/479 (57%), Gaps = 17/479 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+T W+DYET+G + ++D+P QFA IRTD+ LN I P++ YCKP D+LP P ACLIT
Sbjct: 10 QATIYWHDYETWGASPQKDKPSQFAGIRTDLDLNIIGEPLIEYCKPQADYLPHPEACLIT 69
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ + G+ E +F + I F P T GYN+I FDDE++R+ F+RN +PYERE
Sbjct: 70 GITPQVAMKKGLVEAEFIAKIHAEFSVPNTCVAGYNSIRFDDEVSRYSFYRNFYDPYERE 129
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
+KNN SRWD+I++++A Y L P GI WP K +G PSFKLEHL+ N + H AHDALSDV
Sbjct: 130 YKNNNSRWDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIEHAAAHDALSDV 189
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ LA+LI+ P+L+NF LR KK + + P + T + S +
Sbjct: 190 TATIALAKLIKEKQPKLYNFFFGLRGKKALAELVDVFNMTPLVHTTSRIPATQGCTSWVA 249
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE-DIPIS--MIHLNRS 606
P+ HP+NKN +I ++L +P+ + ++ ++R L K+ E D+P+ ++HLN+
Sbjct: 250 PMSFHPVNKNAVICFDLTQNPQVLIDLNVEELRKRLYTKRVDLAEGDLPVGLKLVHLNKC 309
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDLELN 665
PI+ +L N R D N+ + NT + K+ + + + N
Sbjct: 310 PILAPAKTLLPENAA-RLGIDREQCLANLAILKA---NTDLRDKVTEVFNEQGDYSATTN 365
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D LY+ F S D K AI+R P +L+ + FE+KK L+F YRARN+ ETL+ +
Sbjct: 366 VDYLLYDGFTSHADKAKFAIIRDAKPDELAGLKLDFEDKKFNTLLFRYRARNWPETLNQQ 425
Query: 726 ELKRWKKYRISRFYNKKNNLY-NINMFYLEIESLLKKANEHDTK-----ILNALLMYGK 778
EL +W++Y ++ + ++ N F + +E+L A+EHD IL AL Y +
Sbjct: 426 ELDQWRQYCQNKLMHSEDQPSINAQDFMITLENL---AHEHDDSEKNLTILKALYNYAQ 481
>gi|77460659|ref|YP_350166.1| exonuclease I [Pseudomonas fluorescens Pf0-1]
gi|77384662|gb|ABA76175.1| exodeoxyribonuclease I [Pseudomonas fluorescens Pf0-1]
Length = 476
Score = 349 bits (895), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 177/465 (38%), Positives = 269/465 (57%), Gaps = 11/465 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ WYDYET G+N R DRP Q A IRTD LN ID P+ LYC+P+ D LP P AC IT
Sbjct: 2 TSIFWYDYETTGINPRCDRPLQVAGIRTDHELNEIDAPVNLYCQPSEDILPHPAACAITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPSRLAEQGLSEADFMTRVHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+V++A Y L P G+ WP + GK + KLE L+ NN+ H AH+ALSDVR
Sbjct: 122 QGGNSRWDLIDVVRAAYALRPDGLVWPTDDEGKVTLKLERLTAANNIDHGNAHEALSDVR 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARLIR P+L++++ LR K+ V+ +I + +P +I+ FS+ SY+ ++ P
Sbjct: 182 ATIALARLIREKQPKLYDWLFQLRSKQKVMDQIR--LLQPMVHISGRFSAARSYVGVVLP 239
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP NKN LI +L DP+ L D +R L +++ E +P+ +IH+N+ P
Sbjct: 240 LAWHPRNKNALIVCDLHLDPQGLLDLDAETLRQRLYTRRDDLAEGELPVPLKLIHINKCP 299
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELNI 666
V++ L VL ++ R D+ A + A + + +WK K+ Y + +
Sbjct: 300 -VVAPLSVLRADDQQRLGLDM--ALYQAR-ALRLSDAQQVWKDKVSAIYASEDFTSNEDP 355
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+++LY+ FI +D +R+ P +L+ + F++++L EL+F YRARNF +TL+++E
Sbjct: 356 EQQLYDGFIGDRDRRLCEQVRATDPGQLAREQWPFDDERLPELLFRYRARNFPDTLNFEE 415
Query: 727 LKRWKKYRISRFYNKKNNLYN-INMFYLEIESLLKKANEHDTKIL 770
+RW+ + R + N + F +E L A ++L
Sbjct: 416 QERWRIFCRQRLSAPEWGAPNTLQSFAEAMEQWLLSAAPMQAEVL 460
>gi|393762045|ref|ZP_10350674.1| exonuclease I [Alishewanella agri BL06]
gi|392607077|gb|EIW89959.1| exonuclease I [Alishewanella agri BL06]
Length = 477
Score = 349 bits (895), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 186/479 (38%), Positives = 277/479 (57%), Gaps = 13/479 (2%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
N +F +YD+ET+G + ++DRP QFA IRTD LN I P M YC+ A D+LP P+A L
Sbjct: 2 NQAPSFYFYDFETWGADPKKDRPAQFAGIRTDSELNIIGEPDMWYCQLANDYLPHPQAAL 61
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
IT +TPQ C G+ E +F I ++F P T +GYN++ FDDE+TR+ +RN + Y
Sbjct: 62 ITGLTPQLCNKKGLVETEFMRRILQVFSTPNTCVLGYNSLRFDDEVTRYSLYRNFFDVYG 121
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
REW+ SRWDLI++++A Y L P GI WP + +G PSFKLEHL+ NNL H AHDALS
Sbjct: 122 REWQQGNSRWDLIDLVRACYALRPEGINWPLREDGSPSFKLEHLTKANNLEHSSAHDALS 181
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ +A+LI+ P+LF ++ LRKK+ V I P +++ F + S
Sbjct: 182 DVYATIAIAKLIKQQQPKLFQYLFELRKKQKVSELIDVAGLTPLVHVSSKFPAAQGCASW 241
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED----IPISMIHL 603
+ P+ HP NKN +I +NL DP L +D+ ++ L +KK S D + + +IHL
Sbjct: 242 VVPLAYHPTNKNAVICYNLQLDPSPLLNDDLATLQQKL-YKKTSDLADGEQRLGLKLIHL 300
Query: 604 NRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DL 662
N+ P V++N K LS+ D N ++++ + + + +K+ Y+
Sbjct: 301 NKCP-VLANAKTLSAERATELGIDRNLCLQHLEW---LRQHRELQQKVVELYQTPTEYSA 356
Query: 663 ELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
E N D +LY FIS D K+ +L + P L+ + F ++L L FLYRARN+ TL
Sbjct: 357 ETNPDYQLYQGFISDADKQKMQLLHQLDPANLTADSVLFNEERLNRLYFLYRARNYPLTL 416
Query: 723 SYKELKRWKKYRISRFYNKKNNL-YNINMFYLEIESLLKK--ANEHDTKILNALLMYGK 778
+ EL++W++YR + + +N + F L +E+L + A+E T IL AL Y +
Sbjct: 417 TDSELQKWQRYRTDKLMHGLDNPNLTLEQFSLALENLAHEHSADEQKTAILKALYRYAE 475
>gi|120555513|ref|YP_959864.1| exonuclease I [Marinobacter aquaeolei VT8]
gi|120325362|gb|ABM19677.1| Exodeoxyribonuclease I subunit C [Marinobacter aquaeolei VT8]
Length = 482
Score = 348 bits (894), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 174/475 (36%), Positives = 274/475 (57%), Gaps = 10/475 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F W+DYETFG++ DRP QFA +RTD LN I++P+++YCKPA D+LP P ACLIT I
Sbjct: 4 SFYWHDYETFGVDPVHDRPSQFAGVRTDADLNIIEDPLVIYCKPADDYLPSPEACLITGI 63
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L +G PE +F + I F +PGT +VGYN++ FDDE+TR +RNL +PY REW+
Sbjct: 64 TPQKALEDGFPEAEFIAQINAAFSQPGTCAVGYNSLRFDDEVTRHTLYRNLRDPYAREWQ 123
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD+I++++ Y L P GI WP K +G PSF+LE L+ N ++H+ AHDA+SDV A
Sbjct: 124 NGNSRWDIIDMVRLTYALRPEGINWPRKEDGSPSFRLEELTVANGIAHEAAHDAMSDVLA 183
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF+F+L+ + K + +P F+I+ + + +L+ P+
Sbjct: 184 TIAVAKLIKEKQPKLFDFVLNNKDKHSARQMLDTASMKPVFHISAKYPAARGCCALVAPL 243
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLNRSPI 608
NKN +I ++L DP+ + + +IR+ + + E + P+ + LN+ P+
Sbjct: 244 AESLSNKNQVIVYDLREDPEALINASVEEIRERVFTSQAELGEGVSRFPLKGVQLNKCPV 303
Query: 609 V--ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNI 666
+ + L LS + + D + N+ + + F + SDL +
Sbjct: 304 LAPATMLSTLSQERLAELELDGDVLRANLAKLRKAPDLPARVAQAF-EQDFQGSDL-TDP 361
Query: 667 DEELY-NNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
DE+LY FISK D KL L + L+ FE+ +L E++F YRARN+ +TL +
Sbjct: 362 DEQLYAGGFISKTDREKLNWLLTQPVDTLAEQEMSFEDPRLPEMLFRYRARNYPDTLIGE 421
Query: 726 ELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKAN--EHDTKILNALLMYGK 778
E++RW+++R R K ++ + E++ L +IL L +YG+
Sbjct: 422 EMERWEQFRTERLMQPKKGWRSLEAYGQELQRLAADTELTPRKQQILEDLHLYGE 476
>gi|398879265|ref|ZP_10634363.1| exonuclease I [Pseudomonas sp. GM67]
gi|398196849|gb|EJM83840.1| exonuclease I [Pseudomonas sp. GM67]
Length = 476
Score = 348 bits (893), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 174/467 (37%), Positives = 270/467 (57%), Gaps = 13/467 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ WYDYET G+N R DRP Q A +RTD LN ID P+ LYC+P+ D LP P AC IT
Sbjct: 2 TSIFWYDYETTGINPRCDRPLQVAGLRTDFDLNVIDEPVNLYCQPSEDILPHPAACAITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP +G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPGQLTEHGLSEADFMTRVHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+V++A Y L P G+ WP + G+ + KLE L+ N + H AH+ALSDVR
Sbjct: 122 QGGNSRWDLIDVVRAAYALRPDGLVWPTDDEGRVTLKLERLTAANGIDHGNAHEALSDVR 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARLIR P+L++++ LR K+ V+ +I + +P +I+ FS+ SY+ ++ P
Sbjct: 182 ATIALARLIREKQPKLYDWLFQLRSKQKVMDQIR--LLQPMVHISGRFSAARSYVGVVLP 239
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP NKN LI +L DP+ L D +R L +++ E +P+ +IH+N+ P
Sbjct: 240 LAWHPRNKNALIVCDLHLDPQGLLDLDAETLRQRLYTRRDELAEGELPVPLKLIHINKCP 299
Query: 608 IVISNLKVLSSNLMFRYKFDLNC-AFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELN 665
V++ L VL + R D+ + ++ +++ IW+ K+ Y + +
Sbjct: 300 -VVAPLSVLRPDDQQRLGLDMALYQERTLRLSAA----QTIWRDKVQAIYAREDFAQSQD 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY+ FI +D +R+ P +L+ + F++++L EL+F YRARNF ETLS++
Sbjct: 355 PEQQLYDGFIGDRDRRLCEQVRAADPAQLAQEQWPFDDERLPELLFRYRARNFPETLSFE 414
Query: 726 ELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLK-KANEHDTKILN 771
E +RW+ + R + N ++E + L A ++LN
Sbjct: 415 EQERWRVFCQQRLSAPECGAPNTLEAFVEAAAQLNITATPFQQEVLN 461
>gi|398885368|ref|ZP_10640282.1| exonuclease I [Pseudomonas sp. GM60]
gi|398192610|gb|EJM79755.1| exonuclease I [Pseudomonas sp. GM60]
Length = 476
Score = 348 bits (893), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 174/467 (37%), Positives = 270/467 (57%), Gaps = 13/467 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ WYDYET G+N R DRP Q A +RTD LN ID P+ LYC+P+ D LP P AC IT
Sbjct: 2 TSIFWYDYETTGINPRCDRPLQVAGLRTDFDLNVIDEPVNLYCQPSEDILPHPAACAITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP +G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPGQLAEHGLSEADFMTRVHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+V++A Y L P G+ WP + G+ + KLE L+ N + H AH+ALSDVR
Sbjct: 122 QGGNSRWDLIDVVRAAYALRPDGLVWPTDDEGRVTLKLERLTAANGIDHGNAHEALSDVR 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARLIR P+L++++ LR K+ V+ +I + +P +I+ FS+ SY+ ++ P
Sbjct: 182 ATIALARLIREKQPKLYDWLFQLRSKQKVMDQIR--LLQPMVHISGRFSAARSYVGVVLP 239
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP NKN LI +L DP+ L D +R L +++ E +P+ +IH+N+ P
Sbjct: 240 LAWHPRNKNALIVCDLHLDPQGLLDLDAETLRQRLYTRRDELAEGELPVPLKLIHINKCP 299
Query: 608 IVISNLKVLSSNLMFRYKFDLNC-AFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELN 665
V++ L VL + R D+ + ++ +++ IW+ K+ Y + +
Sbjct: 300 -VVAPLSVLRPDDQQRLGLDMALYQERTLRLSAA----QTIWRDKVQAIYAREDFAQSQD 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY+ FI +D +R+ P +L+ + F++++L EL+F YRARNF ETLS++
Sbjct: 355 PEQQLYDGFIGDRDRRLCEQVRAADPAQLAQEQWPFDDERLPELLFRYRARNFPETLSFE 414
Query: 726 ELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLK-KANEHDTKILN 771
E +RW+ + R + N ++E + L A ++LN
Sbjct: 415 EQERWRVFCQQRLSAPECGAPNTLEAFVEAAAQLNITATPFQQEVLN 461
>gi|119469387|ref|ZP_01612326.1| exonuclease I [Alteromonadales bacterium TW-7]
gi|119447251|gb|EAW28520.1| exonuclease I [Alteromonadales bacterium TW-7]
Length = 481
Score = 348 bits (893), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 185/479 (38%), Positives = 277/479 (57%), Gaps = 17/479 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+T W+DYET+G + ++D+P QFA IRTD+ LN I P++ YCKP D+LP P ACLIT
Sbjct: 8 QATIYWHDYETWGASPQKDKPSQFAGIRTDLDLNIIGEPLIEYCKPQADYLPHPEACLIT 67
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ + G+ E +F + I F P T GYN+I FDDE++R+ F+RN +PYERE
Sbjct: 68 GITPQVAMKKGLVEAEFIAKIHAEFSAPNTCVAGYNSIRFDDEVSRYSFYRNFYDPYERE 127
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
+KNN SRWD+I++++A Y L P GI WP K +G PSFKLEHL+ N + H AHDALSDV
Sbjct: 128 YKNNNSRWDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIEHAAAHDALSDV 187
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ LA+LI+ P+L+NF LR KK + + P + + + + +
Sbjct: 188 TATIALAKLIKEKQPKLYNFFFGLRNKKALGDLVDVFNMTPLVHTSSRIPATQGCTTWVA 247
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE-DIPIS--MIHLNRS 606
P+ HP+NKN +I ++L P+ L ++ ++R L K+ E D+P+ ++HLN+
Sbjct: 248 PMSFHPVNKNAVICFDLTQSPQVLLDLNVEELRKRLYTKRVDLAEGDLPVGLKLVHLNKC 307
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDLELN 665
PI+ +L N R D N+ + NT + K+ + + + N
Sbjct: 308 PILAPAKTLLPENAA-RLGIDREQCLANLAILKA---NTDLRDKVTEVFNEQGDYSATTN 363
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D LY+ F S D K AI+R P +L+ +N FE+KK L+F YRARN+ ETL+ +
Sbjct: 364 VDYLLYDGFTSHADKAKFAIIRDAKPDELAGLNLDFEDKKFNTLLFRYRARNWPETLNQQ 423
Query: 726 ELKRWKKYRISRFYNKKNNLY-NINMFYLEIESLLKKANEHDTK-----ILNALLMYGK 778
EL +W++Y ++ + ++ + F + +E+L A+EHD IL AL Y +
Sbjct: 424 ELDQWRQYCQNKLMHGEDQPSISAQDFMITLENL---AHEHDDSEKNLTILKALYNYAQ 479
>gi|398937584|ref|ZP_10667329.1| exonuclease I [Pseudomonas sp. GM41(2012)]
gi|398166865|gb|EJM54953.1| exonuclease I [Pseudomonas sp. GM41(2012)]
Length = 476
Score = 348 bits (892), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 168/425 (39%), Positives = 256/425 (60%), Gaps = 10/425 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ WYDYET G+N R DRP Q A IRTD LN ID P+ LYC+P+ D LP P AC IT
Sbjct: 2 TSIFWYDYETTGINPRCDRPLQMAGIRTDFDLNEIDEPVNLYCQPSEDILPHPAACAITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPGRLAEQGLSEADFMTRVHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+V++A Y L P G+ WP + G+ + KLE L+ VN + H AH+ALSDVR
Sbjct: 122 QGGNSRWDLIDVVRAAYALRPDGLVWPTDDEGRITLKLERLTAVNGIDHGNAHEALSDVR 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARLIR P+L++++ LR K+ V+ +I + +P +I+ FS+ +Y+ ++ P
Sbjct: 182 ATIALARLIREKQPKLYDWLFQLRGKQKVMDQIR--LLQPMVHISGRFSAARNYVGVVLP 239
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP NKN LI +L DP+ L D + +R L +++ E +P+ +IH+N+ P
Sbjct: 240 LAWHPRNKNALIVCDLHLDPQGLLDLDADTLRQRLYTRRDDLAEGELPVPLKLIHINKCP 299
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELNI 666
V++ L VL S R + D++ + A + + +W+ K+ Y +
Sbjct: 300 -VVAPLSVLRSEDQQRLELDMSLYQER---ALRLSDAQTVWRDKVQAMYASEAFTSSQDP 355
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+++LY+ FI +D +RS P +L+ + F++++L EL+F YRARNF +TL+++E
Sbjct: 356 EQQLYDGFIGDRDRRLCEQVRSADPAQLAQQQWPFDDERLPELLFRYRARNFPDTLNFEE 415
Query: 727 LKRWK 731
+RW+
Sbjct: 416 QERWR 420
>gi|372269884|ref|ZP_09505932.1| exonuclease I [Marinobacterium stanieri S30]
Length = 484
Score = 348 bits (892), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 165/475 (34%), Positives = 271/475 (57%), Gaps = 10/475 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
N T+ W+DYET G + RDRP QFA +RTD LN I P+MLYC+P+ D LP P+ACL+T
Sbjct: 6 NLTYFWHDYETTGTDPARDRPLQFAGVRTDAELNIIGEPLMLYCRPSEDVLPHPQACLVT 65
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ + G+ E +F + I PGT VGYN+I FDDE+TR+ +RN +PY RE
Sbjct: 66 GITPQTAMTEGVCEAEFIARIHAELAAPGTCGVGYNSIRFDDEVTRYTLYRNFYDPYARE 125
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+N CSRWD+I++++ L P GITWP +G PS +LE L+ N + H AHDALSDV
Sbjct: 126 WQNGCSRWDIIDMMRLTRALRPDGITWPEYEDGTPSMRLEDLTQANGVDHGNAHDALSDV 185
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +ARL++ P+LF+++++ R K+ V A++ +P +++ + ++ +++
Sbjct: 186 YATIAMARLVKERQPKLFDYVVNNRGKRAVQAQLDVARMKPVLHVSSKYPAEWGNAAIVA 245
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N + W+L DP + ++R+ + + + D IP+ + N+
Sbjct: 246 PVASHPTNRNSTLVWDLREDPTPLFELSVEQLRELIFTRHDQLPADAPRIPLKQVLANKC 305
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNI 666
PI I+ +L+ R K D + ++++ + N T + K+ + + + +
Sbjct: 306 PI-IAPAGMLTKVEADRLKIDGDICRQHLQL---LRNETGLAAKVADIFSDKGFESDGDP 361
Query: 667 DEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
D LY+ F S D + +R+ P+ L + F++ +LEE++ Y+ARNF TLS
Sbjct: 362 DHMLYSGGFFSDHDRALIEQVRNTEPEGLFELELAFQDPRLEEMLLRYKARNFPHTLSED 421
Query: 726 ELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKAN--EHDTKILNALLMYGK 778
E++RW++YR + + Y+ E+ + +K + + D IL L +Y +
Sbjct: 422 EIQRWEEYRSRKLLQGEAGCYSFPQLSQELNEMAQKPDLSDRDRHILEELALYAE 476
>gi|387814925|ref|YP_005430412.1| Exodeoxyribonuclease I, Exonuclease I, DNA
deoxyribophosphodiesterase, dRPase [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|302608296|emb|CBW44754.1| Exodeoxyribonuclease I, Exonuclease I, DNA
deoxyribophosphodiesterase, dRPase [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381339942|emb|CCG95989.1| Exodeoxyribonuclease I, Exonuclease I, DNA
deoxyribophosphodiesterase, dRPase [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 482
Score = 348 bits (892), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 173/475 (36%), Positives = 276/475 (58%), Gaps = 10/475 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F W+DYETFG++ DRP QFA +RTD LN I++P+++YCKPA D+LP P ACLIT I
Sbjct: 4 SFYWHDYETFGVDPVHDRPSQFAGVRTDADLNIIEDPLVIYCKPADDYLPSPEACLITGI 63
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L +G PE +F + I + F +PGT +VGYN++ FDDE+TR +RNL +PY REW+
Sbjct: 64 TPQKALEDGFPEAEFIAQINEAFSQPGTCAVGYNSLRFDDEVTRHTLYRNLRDPYAREWQ 123
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD+I++++ Y L P GI WP K +G PSF+LE L+ N ++H+ AHDA+SDV A
Sbjct: 124 NGNSRWDIIDMVRLTYALRPEGIHWPRKEDGSPSFRLEELTVANGIAHEAAHDAMSDVLA 183
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF+F+L+ + K + +P F+I+ + + +L+ P+
Sbjct: 184 TIAVAKLIKEKQPKLFDFVLNNKDKHSARQMLDTAAMKPVFHISAKYPATRGCCALVAPL 243
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLNRSPI 608
NKN +I ++L DP+ + + +IR+ + + E + P+ + LN+ P+
Sbjct: 244 AESLSNKNQVIVYDLREDPEALINASVEEIRERVFTSQAELGEGVSRFPLKGVQLNKCPV 303
Query: 609 V--ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNI 666
+ + L LS + + D + N+ + + F + SDL +
Sbjct: 304 LAPATMLSTLSQERLAELELDGDVLRANLAKLRKAPDLPARIAQAF-EQDFQGSDL-TDP 361
Query: 667 DEELY-NNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
DE+LY FISK D KL L + + L+ FE+ +L E++F YRARN+ +TL +
Sbjct: 362 DEQLYAGGFISKTDREKLNWLLTQPVETLAEQEVRFEDARLPEMLFRYRARNYPDTLIGE 421
Query: 726 ELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKAN--EHDTKILNALLMYGK 778
E++RW+++R R K ++ + E++ L ++L L +YG+
Sbjct: 422 EMERWEQFRTERLMQPKKGWRSLEAYGRELQRLASDPELTPKKQQVLEDLHLYGE 476
>gi|452750085|ref|ZP_21949840.1| exonuclease I [Pseudomonas stutzeri NF13]
gi|452006087|gb|EMD98364.1| exonuclease I [Pseudomonas stutzeri NF13]
Length = 478
Score = 347 bits (891), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 172/477 (36%), Positives = 276/477 (57%), Gaps = 18/477 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
NS+ WYD+ET G++ RDRP Q A IRT+ L I P+ +YC+P+ D LP P ACL+T
Sbjct: 2 NSSIFWYDFETTGISPSRDRPLQVAGIRTNEALEEIGEPLNIYCRPSDDILPHPAACLVT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITP G+ E +F + + PGT GYN++ FDDE+TR+ +RN +PY RE
Sbjct: 62 GITPATLEQRGVCEAEFIHRLHQQLSMPGTCGAGYNSLRFDDEVTRYSLYRNFYDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI++I+ Y L P G+ WP + G+ + KLE LS N L H AHDALSDV
Sbjct: 122 WQGGNSRWDLIDLIRTAYALRPEGLIWP-EEEGRVTLKLERLSVANGLEHLNAHDALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR+ PRL++++ +LR+K+ VL +I + P +++ FS+ ++S++
Sbjct: 181 RATIALARLIRDRQPRLYDYLYNLRRKQAVLEQIR--LLEPMVHVSGRFSAARHFLSVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L P+ L +R L +++ + +P+ ++H+N+
Sbjct: 239 PLGWHPRNRNALIVCDLQAGPEPLLQETAETLRQRLYTRRDQLADGELPVPLKLVHVNKC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIW----KKIFLDYKINNSDL 662
P V++ LKVL + + R D++ + A+ + IW + I+ + + +D
Sbjct: 299 P-VVAPLKVLRAEDIQRLALDMSLCHER---AAMLREQRQIWSTKLEDIYREERFAGTD- 353
Query: 663 ELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
+ +++LY+ F+ ++D +RS+SP +L+ F F++ +LEEL+F YRARNF E L
Sbjct: 354 --DPEQQLYDGFLGERDRRLCDQVRSLSPAELAKQPFRFDDARLEELLFRYRARNFPEAL 411
Query: 723 SYKELKRWKKYRISRFYNKKNNLYN-INMFYLEIESLLKKANEHDTKILNALLMYGK 778
S E +W+++ R + N + F L+IE + A ++L +G+
Sbjct: 412 SVDEQAQWRQFCQQRLSDGAYGAPNTLAQFELDIEQFMVGATPAQRQLLQQWREHGQ 468
>gi|149376775|ref|ZP_01894532.1| Exonuclease I [Marinobacter algicola DG893]
gi|149358896|gb|EDM47363.1| Exonuclease I [Marinobacter algicola DG893]
Length = 481
Score = 347 bits (891), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 172/475 (36%), Positives = 274/475 (57%), Gaps = 11/475 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F W+DYETFG++ DRP QFA +RTD LN I++P+++YC PA D++P P ACLIT I
Sbjct: 4 SFYWHDYETFGVDPIHDRPSQFAGVRTDADLNIIEDPLIIYCAPADDYVPSPEACLITGI 63
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L G PE +F + I + F +PGT +VGYN++ FDDE++R +RNL +PY REW+
Sbjct: 64 TPQKALEEGFPEAEFIAQINEAFSQPGTCAVGYNSLRFDDEVSRHTLYRNLRDPYAREWQ 123
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD+I++++ Y L P GI WP K +G PSF+LE L+ N ++H+ AHDA+SDV A
Sbjct: 124 NGNSRWDIIDMVRLTYALRPEGIQWPKKEDGSPSFRLEELTVANGIAHEAAHDAMSDVEA 183
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF F+L + K A + +P F+I+ + + +++ P+
Sbjct: 184 TIAVAKLIKEKQPKLFEFVLQNKDKHSARAMLDTASMKPVFHISAKYPATRGCCAMVAPL 243
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLNRSPI 608
HP NKN++I ++L DP + + +IR+ + + E P+ + LN+ P+
Sbjct: 244 ADHPTNKNLVIVYDLREDPSELIHATPEQIRERVFTSQAELGEGTSRFPLKGVQLNKCPV 303
Query: 609 V--ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNI 666
+ + LK LS + + D + +++ + + F + + DL +
Sbjct: 304 LAPATMLKSLSGERLAELELDGDRLREHLTMLRKAPDLPARIAEAF--DQPHEGDL-TDP 360
Query: 667 DEELY-NNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
DE+LY FI K D KL L + L FE+ +L+E++F YRARN+ TL +
Sbjct: 361 DEQLYAGGFIGKTDREKLNWLLQQPVETLGEQEVQFEDGRLQEMLFRYRARNYPSTLIGE 420
Query: 726 ELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK--ILNALLMYGK 778
E++RW+++R R + K ++ F E++ L K +L L +YG+
Sbjct: 421 EMERWEEFRSQRLMSPKKGWRSLEAFGRELQRLAADPELTPEKRHVLEELHLYGE 475
>gi|410090338|ref|ZP_11286934.1| exonuclease I [Pseudomonas viridiflava UASWS0038]
gi|409762386|gb|EKN47407.1| exonuclease I [Pseudomonas viridiflava UASWS0038]
Length = 476
Score = 347 bits (891), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 172/458 (37%), Positives = 263/458 (57%), Gaps = 23/458 (5%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ WYDYET G+N R DR Q A IRTD LN I+ P+ LYC+P+ D LP P AC+IT
Sbjct: 2 TSSIFWYDYETTGINPRNDRALQMAGIRTDAELNEIEPPVNLYCQPSDDILPHPAACVIT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITP G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY RE
Sbjct: 62 GITPATLAEKGLCEADFMTRVHAQLSAPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI+V++A Y L P GI WP + G+ + KLE L+ N + H +AHDALSDV
Sbjct: 122 WQGGNSRWDLIDVVRAAYALRPDGIVWP-EEEGRVTLKLERLTAANGIEHGQAHDALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR PRL++++ +LR K+ V +I + +P +I+ FS+ Y+ ++
Sbjct: 181 RATIALARLIREKQPRLYDYLFALRSKQKVQDQIR--LMQPLVHISGRFSAARHYLGVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI ++L DP L D+ ++ L + ++ E +P+ ++H+NR
Sbjct: 239 PLAWHPHNRNALIVYDLHQDPSPLLEMDVETLKQRLYTRHDALGEGELPVPLKLLHINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFL-----DYKINNSD 661
P V++ + VL + R + D+ + +S+ +W++ D+ I + D
Sbjct: 299 P-VVAPMSVLRAQDQERLQLDMTGYEARV---ASVTEGLEVWQEKLRALYGKDHFIASED 354
Query: 662 LELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
E ++LY+ FI +D +R P++L+ + F++ +L EL+F YRARNF ET
Sbjct: 355 PE----QQLYDGFIGDRDRRLCEQVRVSEPEQLARDAWPFDDARLPELLFRYRARNFPET 410
Query: 722 LSYKELKRWKKYRISRF----YNKKNNLYNINMFYLEI 755
L+ +E RW ++ +R Y N L + +E+
Sbjct: 411 LTAEEQLRWHQFCQARLSHAEYGAPNTLQDFTKALVEL 448
>gi|30248680|ref|NP_840750.1| exonuclease I [Nitrosomonas europaea ATCC 19718]
gi|30180275|emb|CAD84582.1| exodeoxyribonuclease I [Nitrosomonas europaea ATCC 19718]
Length = 496
Score = 347 bits (891), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 178/479 (37%), Positives = 273/479 (56%), Gaps = 9/479 (1%)
Query: 306 LHNGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRA 365
+ GNST W+DYET G R DRPFQFA +RTD LN I +P+++YC+PA D LP P A
Sbjct: 1 MQTGNSTLYWHDYETSGATPRWDRPFQFAGLRTDEALNEIGDPLVIYCQPARDRLPHPEA 60
Query: 366 CLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINP 425
CL+T ITPQ G+PE +F ++I +PGT VGYNT+ FDDE+TRF +RN +P
Sbjct: 61 CLLTGITPQMAEARGLPEPEFIALIHAQLAQPGTCGVGYNTLRFDDEVTRFTLYRNFYDP 120
Query: 426 YEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDA 485
Y REW++ SRWD+I++ + + L P GI WP GKPSF+LE ++ N L H AHDA
Sbjct: 121 YAREWQSGNSRWDVIDLARMTFALRPEGINWPINGEGKPSFRLEDITTANGLVHDSAHDA 180
Query: 486 LSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYI 545
LSDVRAT+ LARL+R PRL++++ LR K+ + P + + M+SS++
Sbjct: 181 LSDVRATIALARLLRAQQPRLYDWLFRLRDKRAAGNLLDMKTHAPVLHTSRMYSSEYGCT 240
Query: 546 SLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIH 602
+L+ P+ N N ++ ++L HDP +F+L DI+ + + L K E +P+ +
Sbjct: 241 TLVMPLLPETGNANSVLVYDLRHDPAEFVLLDIDALAERLFTPKEELAEGLQRLPVKAVR 300
Query: 603 LNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL 662
LN+ P ++ KVL+ + R ++ ++ + +L + ++I Y N
Sbjct: 301 LNKCP-ALAPQKVLNDEVANRIGLNVEQCQQHWQL---LLQHPDFMQRIKQAYSGNKVFA 356
Query: 663 ELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
E + D LY+ F S D ++R P KL+++ F++++ EL+F YRARNF +TL
Sbjct: 357 ENDADLALYDGFASDHDRNLFPLVRDAEPGKLADLAGKFQDERYIELLFRYRARNFPDTL 416
Query: 723 SYKELKRWKKY-RISRFYNKKNNLYNINMFYLEIESLLKKANEH-DTKILNALLMYGKI 779
S +E W+ + R N N +N ++ ++ L + ILN L +G++
Sbjct: 417 SVQEEHHWQMHCRRQLGENAINGSLTLNEYHQKLLQLRTDCPQQAQLDILNELEAWGRV 475
>gi|163752570|ref|ZP_02159753.1| exodeoxyribonuclease I [Shewanella benthica KT99]
gi|161327543|gb|EDP98744.1| exodeoxyribonuclease I [Shewanella benthica KT99]
Length = 470
Score = 347 bits (891), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 181/478 (37%), Positives = 282/478 (58%), Gaps = 18/478 (3%)
Query: 305 LLHNGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPR 364
+ H+ N T W+DYETFG N +DRP QFA IRTD+ LN + P+ YCK A D+LP P
Sbjct: 1 MAHSSNHTIFWHDYETFGANPSKDRPSQFAGIRTDMDLNIVSEPVTFYCKLATDYLPSPE 60
Query: 365 ACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLIN 424
A LIT ITPQ G+PE +F + + + F +P T GYN+I FDDE+TR+ F+RN I+
Sbjct: 61 AILITGITPQLVNLKGMPETEFMAKVNEQFSQPNTCVAGYNSIRFDDEVTRYGFYRNFID 120
Query: 425 PYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHD 484
PY REW+ SRWD+I++++A Y P GI WP K +G PSFKLEHL+ N LSH+KAHD
Sbjct: 121 PYAREWQKGNSRWDIIDLVRACYAFRPEGIEWPLKEDGTPSFKLEHLTKANGLSHEKAHD 180
Query: 485 ALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSY 544
A+SDV AT+ +A+LI+ P+LF++ LR+K+ V ++ P +++ S++H
Sbjct: 181 AMSDVYATIDMAKLIKQKQPKLFDYYFQLRRKQEVSKQLDVLNMLPLVHVSSKISAEHGC 240
Query: 545 ISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED-IPISM--I 601
+L+ P+ H NKN +I NL D + D +IR+ + +++ +D +PIS+ I
Sbjct: 241 TTLIAPVAHHSSNKNAIICVNLAMDISPLIELDAEQIRERMYTRRDDLADDELPISVKQI 300
Query: 602 HLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSD 661
H+N+ P + S K+L+ L R D A + K + + + +K+ + + + +
Sbjct: 301 HINKCPFITSP-KILTDELAQRLNIDKAFAREQYKL---LKQHPELREKLVAVFDVEHDN 356
Query: 662 LELNIDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIE 720
+ D +LY+ F D K+ I+R P+ L+ + F++++L+E++F YRARN+
Sbjct: 357 GSQDPDLQLYSGGFFGSADKEKMEIIRHTLPQNLAALELNFDDQRLKEMLFRYRARNYPA 416
Query: 721 TLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLL-KKANEHD-TKILNALLMY 776
TL E +W+ + SR N + +++E+L+ AN+ D K+L AL Y
Sbjct: 417 TLDESESMKWRDFCQSRL--------NDPEYMMQLENLVNDTANDEDKQKLLTALCHY 466
>gi|359448549|ref|ZP_09238080.1| exodeoxyribonuclease I [Pseudoalteromonas sp. BSi20480]
gi|358045640|dbj|GAA74329.1| exodeoxyribonuclease I [Pseudoalteromonas sp. BSi20480]
Length = 481
Score = 347 bits (890), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 185/479 (38%), Positives = 277/479 (57%), Gaps = 17/479 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+T W+DYET+G + ++D+P QFA IRTD+ LN I P++ YCKP D+LP P ACLIT
Sbjct: 8 QATIYWHDYETWGASPQKDKPSQFAGIRTDLDLNIIGEPLIEYCKPQADYLPHPEACLIT 67
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ + G+ E +F + I F P T GYN+I FDDE++R+ F+RN +PYERE
Sbjct: 68 GITPQVAMKKGLVEAEFIAKIHAEFSAPNTCVAGYNSIRFDDEVSRYSFYRNFYDPYERE 127
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
+KNN SRWD+I++++A Y L P GI WP K +G PSFKLEHL+ N + H AHDALSDV
Sbjct: 128 YKNNNSRWDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIEHAAAHDALSDV 187
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ LA+LI+ P+L+NF LR KK + + P + + + + +
Sbjct: 188 TATIALAKLIKEKQPKLYNFFFGLRNKKALGELVDVFNMTPLVHTSSRIPATQGCTTWVA 247
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE-DIPIS--MIHLNRS 606
P+ HP+NKN +I ++L P+ L ++ ++R L K+ E D+P+ ++HLN+
Sbjct: 248 PMSFHPVNKNAVICFDLTQSPQVLLDLNVEELRKRLYTKRIDLAEGDLPVGLKLVHLNKC 307
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDLELN 665
PI+ +L N R D N+ + NT + K+ + + + N
Sbjct: 308 PILAPAKTLLPENAA-RLGIDREQCLANLAILKA---NTELRDKVTEVFNEQGDYSATTN 363
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D LY+ F S D K AI+R P +L+ +N FE+KK L+F YRARN+ ETL+
Sbjct: 364 VDYLLYDGFTSHADRAKFAIIRDAKPDELAGLNLDFEDKKFNILLFRYRARNWPETLNQH 423
Query: 726 ELKRWKKYRISRFYNKKNNLY-NINMFYLEIESLLKKANEHDTK-----ILNALLMYGK 778
EL++W++Y ++ + ++ + F + +E+L A+EHD IL AL Y +
Sbjct: 424 ELEQWRQYCQNKLMHGEDQPSISAQDFMITLENL---AHEHDDSEKNLTILKALYNYAQ 479
>gi|120599334|ref|YP_963908.1| exonuclease I [Shewanella sp. W3-18-1]
gi|120559427|gb|ABM25354.1| Exodeoxyribonuclease I subunit C [Shewanella sp. W3-18-1]
Length = 472
Score = 347 bits (890), Expect = 3e-92, Method: Composition-based stats.
Identities = 184/476 (38%), Positives = 279/476 (58%), Gaps = 18/476 (3%)
Query: 307 HNGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRAC 366
HN + W+DYETFG N RDRP QFA IRTD+ LN I P YCK A D+LP P A
Sbjct: 5 HNKIESIFWHDYETFGANPARDRPAQFAGIRTDLDLNIIGEPETFYCKQATDYLPSPEAI 64
Query: 367 LITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPY 426
LIT ITPQ GIPE +F I+ +F +P T GYN++ FDDE+TR+ F+RN I+PY
Sbjct: 65 LITGITPQLANLKGIPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPY 124
Query: 427 EREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDAL 486
REW+N SRWD+I++++A Y P GI WP K++G PSFKLEHL+ N LSH+KAHDA+
Sbjct: 125 AREWQNGNSRWDIIDLVRACYAFRPDGINWPLKDDGSPSFKLEHLTQANGLSHEKAHDAM 184
Query: 487 SDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYIS 546
SDV AT+ +A+LIR P+L+++ LR+K+ V +I +P +++ S+++ +
Sbjct: 185 SDVYATIAMAKLIREKQPKLYHYYFELRRKQAVSDQIDVLNMQPLAHVSSKISARNGCTT 244
Query: 547 LMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHL 603
L+ P+ HP NKN +I NL D +I +I+ + + ED IP+ IHL
Sbjct: 245 LISPVAHHPTNKNAVICVNLAMDLSPLFDLNIEQIKTRMYTARAELAEDELPIPVKQIHL 304
Query: 604 NRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLE 663
N+ P I++ K+L R D A + K + N+ + +K+ ++ +
Sbjct: 305 NKCPF-ITSAKILDDAQASRLNIDKAFAREQYK---RLRNHPELREKLAQLFEHDGESTT 360
Query: 664 LNIDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
++ D LY+ F S D K+ I+R P+ L+ + F++ ++ E++F YRARN+ E L
Sbjct: 361 VDPDLMLYSGGFFSSADKAKMEIIRHTLPQNLAALELQFDDVRMPEMLFRYRARNYPELL 420
Query: 723 SYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKA--NEHDTKILNALLMY 776
+E RW+++ +R ++ + L++E+LL+ +E+ K+L AL Y
Sbjct: 421 DDQESHRWREFCQNRLADQD--------YLLKLENLLQNTVDDENKQKLLAALCHY 468
>gi|429211722|ref|ZP_19202887.1| exonuclease I [Pseudomonas sp. M1]
gi|428156204|gb|EKX02752.1| exonuclease I [Pseudomonas sp. M1]
Length = 477
Score = 347 bits (889), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 175/453 (38%), Positives = 258/453 (56%), Gaps = 14/453 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
++ WYDYET G++ RRDRP Q A IRTD LN I+ P+ YC+P+ D LP P ACLIT
Sbjct: 2 TASIFWYDYETTGIDPRRDRPLQVAGIRTDEALNEIEAPLNFYCRPSDDILPHPAACLIT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G+ E +F + + +PGT GYNT+ FDDE+TR+ +RN +PY RE
Sbjct: 62 GITPQRLEEQGLGEAEFMTRLHAELSRPGTCVAGYNTLRFDDEVTRYSLYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI++++ Y L P GI WP + G + KLE L+ N L H +AHDALSDV
Sbjct: 122 WQGGNSRWDLIDLVRTAYALRPEGIQWPLNDEGVVTLKLERLTEANGLEHGQAHDALSDV 181
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ +ARL+R P+L++F+ LR K VL ++ + +P +++ FS+ S++SL+
Sbjct: 182 RATIAMARLLRQRQPKLYDFLYRLRGKHAVLDQVQ--LLKPLVHVSGRFSAARSFLSLVL 239
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L DP L D +R L ++ E +P+ ++H+NR
Sbjct: 240 PLAWHPRNRNALIVCDLGLDPAPLLELDAETLRQRLYTRREELGEGELPVPLKLVHVNRC 299
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELN 665
P V++ L VL R DL A + A ++ W+ K+ Y+ N +
Sbjct: 300 P-VLAPLAVLREQDQARLGIDL--AVWQAR-AQVLVEGKPQWQDKLAAIYEQENFPGVAD 355
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY+ FI +D +R P +L + F++ +L EL+F YRARNF ETLS
Sbjct: 356 PEQQLYDGFIGDRDRRLCEQVRQADPVRLGREQWPFDDPRLVELLFRYRARNFPETLSTA 415
Query: 726 ELKRWKKYRISRF----YNKKNNLYNINMFYLE 754
E ++W+++ R Y N L N + E
Sbjct: 416 EQEQWREFCRCRLMLDEYGAPNTLANFEVALAE 448
>gi|392554518|ref|ZP_10301655.1| exonuclease I [Pseudoalteromonas undina NCIMB 2128]
Length = 483
Score = 346 bits (888), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 182/482 (37%), Positives = 279/482 (57%), Gaps = 17/482 (3%)
Query: 307 HNGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRAC 366
+ +T W+DYET+G + ++D+P QFA +RTD+ LN I P++ YCKP D+LP P AC
Sbjct: 7 YENQATIYWHDYETWGASPQKDKPSQFAGVRTDLDLNIIGEPLIEYCKPQADYLPHPEAC 66
Query: 367 LITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPY 426
LIT ITPQ + G+ E +F + I F P T GYN+I FDDE++R+ F+RN +PY
Sbjct: 67 LITGITPQVAMQKGLVEAEFIAKIHAEFSVPNTCVAGYNSIRFDDEVSRYSFYRNFYDPY 126
Query: 427 EREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDAL 486
ERE+KNN SRWD+I++++A Y L P GI WP K +G PSFKLEHL+ N + H AHDAL
Sbjct: 127 EREYKNNNSRWDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIEHAAAHDAL 186
Query: 487 SDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYIS 546
SDV AT+ LA+LI+ P+L+ F SLR KK + + P + + ++ +
Sbjct: 187 SDVTATIALAKLIKEKQPKLYQFFFSLRGKKALAEMVDVFNMTPLVHTSSRITATQGCTT 246
Query: 547 LMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE-DIPIS--MIHL 603
+ P+ HP+NKN +I ++L +P+ L ++ ++R L K+ E D+P+ ++HL
Sbjct: 247 WVAPMSFHPVNKNAVICFDLTQNPQVLLDLNVEELRKRLYTKRIDLAEGDLPVGLKLVHL 306
Query: 604 NRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDL 662
N+ PI+ +L N R D N+ + NT + K+ + + +
Sbjct: 307 NKCPILAPAKTLLPENAA-RLGIDREQCLTNLAILKA---NTELRDKVTEVFNEQGDYSA 362
Query: 663 ELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
N+D LY+ F S D K AI+R P+ L+++ FE+ K L+F YRARN+ +TL
Sbjct: 363 TTNVDYLLYDGFTSHADKAKFAIIRDAKPEDLASLKLEFEDPKFNTLLFRYRARNWPQTL 422
Query: 723 SYKELKRWKKYRISRFYNKKNNLY-NINMFYLEIESLLKKANEHDTK-----ILNALLMY 776
+ +EL +W++Y S+ + ++ + F + +E+L A+EHD IL AL Y
Sbjct: 423 NQQELDQWRQYCQSKLMHGEDQPSISAQDFMITLENL---AHEHDDSEKNLTILKALYNY 479
Query: 777 GK 778
+
Sbjct: 480 AQ 481
>gi|359436348|ref|ZP_09226459.1| exodeoxyribonuclease I [Pseudoalteromonas sp. BSi20311]
gi|359444050|ref|ZP_09233854.1| exodeoxyribonuclease I [Pseudoalteromonas sp. BSi20439]
gi|358028989|dbj|GAA62708.1| exodeoxyribonuclease I [Pseudoalteromonas sp. BSi20311]
gi|358041999|dbj|GAA70103.1| exodeoxyribonuclease I [Pseudoalteromonas sp. BSi20439]
Length = 481
Score = 346 bits (887), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 182/479 (37%), Positives = 277/479 (57%), Gaps = 17/479 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+T W+DYET+G + ++D+P QFA +RTD+ LN I P++ YCKP D+LP P ACLIT
Sbjct: 8 QATIYWHDYETWGASPQKDKPSQFAGVRTDLDLNIIGEPLIEYCKPQADYLPHPEACLIT 67
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ + G+ E +F + I F P T GYN+I FDDE++R+ F+RN +PYERE
Sbjct: 68 GITPQVAMQKGLVEAEFIAKIHAEFSVPNTCVAGYNSIRFDDEVSRYSFYRNFYDPYERE 127
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
+KNN SRWD+I++++A Y L P GI WP K +G PSFKLEHL+ N + H AHDALSDV
Sbjct: 128 YKNNNSRWDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIEHAAAHDALSDV 187
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ LA+LI+ P+L+ F SLR KK + + P + + + + +
Sbjct: 188 TATIALAKLIKEKQPKLYQFFFSLRGKKALAEMVDVFNMTPLVHTSSRIPATQGCTTWVA 247
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE-DIPIS--MIHLNRS 606
P+ HP+NKN +I ++L +P+ L ++ ++R L K+ E D+P+ ++HLN+
Sbjct: 248 PMSFHPVNKNAVICFDLTQNPQVLLDLNVEQLRKRLYTKRIDLAEGDLPVGLKLVHLNKC 307
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDLELN 665
PI+ +L N R D N+ + NT + K+ + + + N
Sbjct: 308 PILAPAKTLLPENAA-RLGIDREQCLANLAILKA---NTELRDKVTEVFNEQGDYSATTN 363
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D LY+ F S D K AI+R P+ L+++ FE+ K L+F YRARN+ +TL+ +
Sbjct: 364 VDYLLYDGFTSHADKAKFAIIRDAKPEDLASLKLEFEDPKFNTLLFRYRARNWPQTLNQQ 423
Query: 726 ELKRWKKYRISRFYNKKNNLY-NINMFYLEIESLLKKANEHDTK-----ILNALLMYGK 778
EL +W++Y S+ + ++ + F + +E+L A+EHD IL AL Y +
Sbjct: 424 ELDQWRQYCQSKLMHGEDQPSISAQDFMITLENL---AHEHDDSEKNLTILKALYNYAQ 479
>gi|392538995|ref|ZP_10286132.1| exonuclease I [Pseudoalteromonas marina mano4]
Length = 481
Score = 346 bits (887), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 185/479 (38%), Positives = 276/479 (57%), Gaps = 17/479 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+T W+DYET+G + ++D+P QFA IRTD+ LN I P++ YCKP D+LP P ACLIT
Sbjct: 8 QATVYWHDYETWGASPQKDKPSQFAGIRTDLDLNIIGEPLIEYCKPQADYLPHPEACLIT 67
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ + G+ E +F + I F P T GYN+I FDDE++R+ F+RN +PYERE
Sbjct: 68 GITPQVAMKKGLVEAEFIAKIHAEFSMPNTCVAGYNSIRFDDEVSRYSFYRNFYDPYERE 127
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
+KNN SRWD+I++++A Y L P GI WP K +G PSFKLEHL+ N + H AHDALSDV
Sbjct: 128 YKNNNSRWDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIEHAAAHDALSDV 187
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ LA+LI+ P+L+NF LR KK + + P + + + + +
Sbjct: 188 TATIALAKLIKEKQPKLYNFFFGLRNKKALGDLVDVFNMTPLVHTSSRIPATQGCTTWVA 247
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE-DIPIS--MIHLNRS 606
P+ HP+NKN +I ++L P+ L ++ ++R L K+ E D+P+ ++HLN+
Sbjct: 248 PMSFHPVNKNAVICFDLTQSPQVLLDLNVEELRKRLYTKRVDLAEGDLPVGLKLVHLNKC 307
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDLELN 665
PI+ +L N R D N+ + NT + K+ + K + N
Sbjct: 308 PILAPAKTLLPENAA-RLGIDREQCLANLAILKA---NTELRDKVTEVFNKQGDYSATTN 363
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D LY+ F S D K AI+R +L+ +N FE+KK L+F YRARN+ ETL+ +
Sbjct: 364 VDYLLYDGFTSHADKAKFAIIRDAKADELAGLNLDFEDKKFNTLLFRYRARNWPETLNQQ 423
Query: 726 ELKRWKKYRISRFYNKKNNLY-NINMFYLEIESLLKKANEHDTK-----ILNALLMYGK 778
EL +W++Y ++ + ++ + F + +E+L A+EHD IL AL Y +
Sbjct: 424 ELDQWRQYCQNKLMHGEDQPSISAQDFMITLENL---AHEHDDSEKNLTILKALYNYAQ 479
>gi|83647678|ref|YP_436113.1| exonuclease I [Hahella chejuensis KCTC 2396]
gi|83635721|gb|ABC31688.1| Exonuclease I [Hahella chejuensis KCTC 2396]
Length = 483
Score = 346 bits (887), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 172/476 (36%), Positives = 276/476 (57%), Gaps = 12/476 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF WYD+ET+G + RRDRP QFA +RTD+ LN I+ P+++YC PA D LP P ACLIT I
Sbjct: 4 TFYWYDFETWGADPRRDRPSQFAGVRTDLDLNPIEKPLVMYCMPAEDVLPQPEACLITGI 63
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L+ G+ E +F +I + F +PGT VGYN+I FDDE+TR +RN +PY REW+
Sbjct: 64 TPQKALSEGVSEAEFIRLIHEQFSRPGTCVVGYNSIRFDDEVTRNTLYRNFYDPYSREWR 123
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD+I++++ Y + P GI WP G PSF+LE L+ N ++H+ AHDA+SDV A
Sbjct: 124 NGNSRWDVIDMVRLTYAMRPDGINWPMNAEGVPSFRLEELTKANGVTHEAAHDAMSDVYA 183
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +ARLI+ P+L++++L R KK + + +P F+++ F + +++ PI
Sbjct: 184 TIAVARLIKTAQPKLYDYVLGHRNKKVLEGLVDIERMKPLFHVSSKFPAALGCCAMVAPI 243
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N N +I ++L DP + + KIR+ + E IP+ ++HLN+ PI
Sbjct: 244 ARHPTNPNGVIVYDLRADPSTWTHLPVEKIRERIFTSNEDLPEGAERIPLKVVHLNKCPI 303
Query: 609 VISN--LKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNI 666
++ + LK + + ++ D + +++ N I +++ + D E +
Sbjct: 304 LVESKILKTMDPERLRGFQLDGDKLRSHLQALRQAEN---IQQRVAEVFNEPMDDSETDP 360
Query: 667 DEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
D LY+ F S D + + SP+ L + FE+ +L+E++F YRARNF TL+ +
Sbjct: 361 DLMLYSGGFFSNNDRELMTFIHEQSPEVLGELELPFEDPRLQEMLFRYRARNFPGTLNEE 420
Query: 726 ELKRWKKYRISRFYNKKNNLY-NINMFYLEIESLLKKAN--EHDTKILNALLMYGK 778
E+++W++YR R + + + ++ ++E L + IL L +YG+
Sbjct: 421 EMEKWERYRYHRLAGESSGASISFQAYFKKLEQLAANPDITPFQLSILQDLHLYGE 476
>gi|404401521|ref|ZP_10993105.1| exonuclease I [Pseudomonas fuscovaginae UPB0736]
Length = 478
Score = 346 bits (887), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 173/474 (36%), Positives = 269/474 (56%), Gaps = 14/474 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ WYDYET G+N R DR Q A IRTD+ LN ID PI LYC+P+ D LP P AC+IT
Sbjct: 2 TSLFWYDYETTGINPRSDRALQVAGIRTDVELNEIDEPINLYCRPSEDILPHPAACMITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP + G+ E F + + +PGT GYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPGLLASQGLDEADFMTRVHAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+V++A Y L P GI WP + +G+ + +LE L+ N + H AH+ALSDVR
Sbjct: 122 QGGNSRWDLIDVVRAAYALRPEGIVWP-EEDGRVTLRLERLTAANGIDHGHAHEALSDVR 180
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARLIR PRL+ ++ LR K+ VL +I + +P +I+ FS+ Y+ ++ P
Sbjct: 181 ATIALARLIRERQPRLYEWLFQLRSKQRVLDQIR--LLQPMVHISGRFSAARHYLGVVLP 238
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP N+N LI +L DP+ L D +R +L ++ + +P+ +IH+NR P
Sbjct: 239 LAWHPSNRNALIVCDLHEDPQPLLELDAESLRRHLYTRREDMADGQLPVPLKLIHVNRCP 298
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTY-IWK-KIFLDYKINNSDLELN 665
V++ + VL R D+ + LN+ +W+ K+ Y + +
Sbjct: 299 -VVAPMNVLREPDQQRLHLDMAL----YEARRLRLNDAQEVWRDKVQAIYAAQDFIPSED 353
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY+ F+ +D +R+ P++L+ + F++++L EL+F YRARNF E+LS +
Sbjct: 354 PEQQLYDGFLGDRDRRLCEQVRNCGPEQLAREPWPFDDERLPELLFRYRARNFPESLSEE 413
Query: 726 ELKRWKKYRISRFYNKKNNLYN-INMFYLEIESLLKKANEHDTKILNALLMYGK 778
E +RW+K+ R N + F+ + S A ++L + +
Sbjct: 414 EQERWRKFCRQRLSEASWGAPNTLAQFHEALASSFPNATPEQAQVLGEWQQHAQ 467
>gi|424924580|ref|ZP_18347941.1| Exonuclease I [Pseudomonas fluorescens R124]
gi|404305740|gb|EJZ59702.1| Exonuclease I [Pseudomonas fluorescens R124]
Length = 476
Score = 345 bits (886), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 171/448 (38%), Positives = 262/448 (58%), Gaps = 10/448 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ WYDYET G+N R DRP Q A IRTD LN ID P+ LYC+P+ D LP P AC IT
Sbjct: 2 TSIFWYDYETTGINPRYDRPLQVAGIRTDHDLNEIDEPVNLYCQPSEDILPHPAACAITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP +G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPGQLAEHGLSEADFMTRVHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+V++A Y L P G+ WP + GK + KLE L+ N++ H AH+ALSDVR
Sbjct: 122 QGGNSRWDLIDVVRAAYALRPDGLVWPTDDEGKVTLKLERLTAANHIDHGHAHEALSDVR 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARLIR P+L++++ LR K+ V+ +I + +P +I+ FS+ Y+ ++ P
Sbjct: 182 ATIALARLIREKQPKLYDWLFQLRSKQKVMDQIR--LLQPLVHISGRFSAARHYVGVVLP 239
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP N+N LI +L DP+ L D +R L +++ E +P+ +IH+NR P
Sbjct: 240 LAWHPRNRNALIVCDLHLDPQGLLDLDAETLRQRLYTRRDDLAEGELPVPLKLIHINRCP 299
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELNI 666
V++ L VL ++ R D+ A + A + + +WK K+ Y + +
Sbjct: 300 -VVAPLSVLRADDQQRLGLDM--ALYQAR-ALRLSDAQQVWKDKVAAIYASEDFTPSEDP 355
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+++LY+ FI +D +R+ P +L+ ++ F++++L EL+F YRARNF +TL+ +E
Sbjct: 356 EQQLYDGFIGDRDRRLCEQVRTADPAQLAQEHWPFDDERLPELLFRYRARNFPDTLNSEE 415
Query: 727 LKRWKKYRISRFYNKKNNLYNINMFYLE 754
+RW+ + R + N + E
Sbjct: 416 QERWRIFCQQRLSEPQMGAPNTLQSFAE 443
>gi|146292669|ref|YP_001183093.1| exonuclease I [Shewanella putrefaciens CN-32]
gi|145564359|gb|ABP75294.1| Exodeoxyribonuclease I subunit C [Shewanella putrefaciens CN-32]
Length = 470
Score = 345 bits (886), Expect = 7e-92, Method: Composition-based stats.
Identities = 182/471 (38%), Positives = 277/471 (58%), Gaps = 18/471 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+ W+DYETFG N RDRP QFA IRTD+ LN I P YCK A D+LP P A LIT I
Sbjct: 8 SIFWHDYETFGANPARDRPAQFAGIRTDLDLNIIGEPETFYCKQATDYLPSPEAILITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ GIPE +F I+ +F +P T GYN++ FDDE+TR+ F+RN I+PY REW+
Sbjct: 68 TPQLANLKGIPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD+I++++A Y P GI WP K++G PSFKLEHL+ N LSH+KAHDA+SDV A
Sbjct: 128 NGNSRWDIIDLVRACYAFRPDGINWPLKDDGSPSFKLEHLTQANGLSHEKAHDAMSDVYA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LIR P+L+++ LR+K+ V +I +P +++ S+++ +L+ P+
Sbjct: 188 TIAMAKLIREKQPKLYHYYFELRRKQAVSDQIDVLNMQPLAHVSSKISARNGCTTLISPV 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN +I NL D +I +I+ + + ED IP+ IHLN+ P
Sbjct: 248 AHHPTNKNAVICVNLAMDLSPLFDLNIEQIKTRMYTARAELAEDELPIPVKQIHLNKCPF 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
I++ K+L R D A + K + N+ + +K+ ++ + ++ D
Sbjct: 308 -ITSAKILDDAQASRLNIDKAFAREQYK---RLRNHPELREKLAQLFEHDGESTTVDPDL 363
Query: 669 ELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY+ F S D K+ I+R P+ L+ + F++ ++ E++F YRARN+ E L +E
Sbjct: 364 MLYSGGFFSSADKAKMEIIRHTLPQNLAALELQFDDVRMPEMLFRYRARNYPELLDDQES 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKA--NEHDTKILNALLMY 776
RW+++ +R ++ + L++E+LL+ +E+ K+L AL Y
Sbjct: 424 HRWREFCQNRLADQD--------YLLKLENLLQNTVDDENKQKLLAALCHY 466
>gi|398873738|ref|ZP_10628990.1| exonuclease I [Pseudomonas sp. GM74]
gi|398198583|gb|EJM85538.1| exonuclease I [Pseudomonas sp. GM74]
Length = 476
Score = 345 bits (886), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 167/429 (38%), Positives = 256/429 (59%), Gaps = 18/429 (4%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ WYDYET G+N R DRP Q A +RTD LN ID P+ LYC+P+ D LP P AC IT
Sbjct: 2 TSIFWYDYETTGINPRCDRPLQMAGLRTDFDLNEIDEPVNLYCQPSDDILPHPAACTITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPGQLQAQGLSEADFMTRVHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+V++A Y L P G+ WP + G+ + KLE L+ N + H AH+ALSDVR
Sbjct: 122 QGGNSRWDLIDVVRAAYALRPDGLVWPTDDEGRVTLKLERLTAANGIDHGNAHEALSDVR 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARLIR P+L++++ LR K+ V+ +I + +P +++ FS+ +Y+ ++ P
Sbjct: 182 ATIALARLIREKQPKLYDWLFQLRSKQKVMDQIR--LMQPLVHVSGRFSAARNYVGVVLP 239
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP NKN LI +L DP+ L D +R L +++ E +P+ +IH+N+ P
Sbjct: 240 LAWHPRNKNALIVCDLHLDPQGLLGLDAESLRQRLYTRRDELAEGELPVPLKLIHINKCP 299
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLD-----YKINNSDL 662
V++ L VL R D+ + + S LN+T +K++LD Y +
Sbjct: 300 -VVAPLSVLRQEDQQRLGLDMALYQQRV----SQLNDT---RKVWLDKILAIYAREDFSQ 351
Query: 663 ELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
+ +++LY+ FI +D +R++ P +L+ + F++++L EL+F YRARNF +TL
Sbjct: 352 SQDPEQQLYDGFIGDRDRRLCEQVRTVDPMQLAQEQWPFDDERLPELLFRYRARNFPDTL 411
Query: 723 SYKELKRWK 731
+ +E +RW+
Sbjct: 412 NSEEQERWR 420
>gi|414071977|ref|ZP_11407934.1| exodeoxyribonuclease I [Pseudoalteromonas sp. Bsw20308]
gi|410805648|gb|EKS11657.1| exodeoxyribonuclease I [Pseudoalteromonas sp. Bsw20308]
Length = 483
Score = 345 bits (886), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 185/478 (38%), Positives = 277/478 (57%), Gaps = 17/478 (3%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
+T W+DYET+G + ++D+P QFA IRTD+ LN I P++ YCKP D+LP P ACLIT
Sbjct: 11 ATIYWHDYETWGASPQKDKPSQFAGIRTDLDLNIIGEPLIEYCKPQADYLPHPEACLITG 70
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ + G+ E +F + I F P T GYN+I FDDE++R+ F+RN +PYERE+
Sbjct: 71 ITPQVAMKKGLVEAEFIAKIHAEFSVPNTCVAGYNSIRFDDEVSRYSFYRNFYDPYEREY 130
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
KNN SRWD+I++++A Y L P GI WP K +G PSFKLEHL+ N + H AHDALSDV
Sbjct: 131 KNNNSRWDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIEHAAAHDALSDVT 190
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LA+LI+ P+L+NF LR KK + + P + T + S + P
Sbjct: 191 ATIALAKLIKEKQPKLYNFFFGLRNKKALAELVDVFNMTPLVHTTSRIPATQGCTSWVAP 250
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE-DIPIS--MIHLNRSP 607
+ HP+NKN +I ++L +P+ + +I ++R L K+ E ++P+ ++HLN+ P
Sbjct: 251 MSFHPVNKNAVICFDLTQNPQVLIDLNIEELRKRLYTKRVDLAEGELPVGLKLVHLNKCP 310
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDLELNI 666
I+ +L N R + N+ + NT + K+ + + + N+
Sbjct: 311 ILAPAKTLLPENAA-RLGINREQCLTNLAILKA---NTDLRDKVTEVFNEQGDYSATTNV 366
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
D LY+ F S D K AI+R P +L+ + FE+KK L+F YRARN+ ETL+ +E
Sbjct: 367 DYLLYDGFTSHADKAKFAIIRDAKPDELAGLKLDFEDKKFNTLLFRYRARNWPETLNQQE 426
Query: 727 LKRWKKYRISRFYNKKNNLY-NINMFYLEIESLLKKANEHDTK-----ILNALLMYGK 778
L +W++Y ++ + ++ N F + +E+L A+EHD IL AL Y +
Sbjct: 427 LDQWRQYCQNKLMHGEDQPSINAQDFMITLENL---AHEHDDSEKNLTILKALYNYAQ 481
>gi|330504554|ref|YP_004381423.1| exonuclease I [Pseudomonas mendocina NK-01]
gi|328918840|gb|AEB59671.1| exonuclease I [Pseudomonas mendocina NK-01]
Length = 481
Score = 345 bits (886), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 173/459 (37%), Positives = 264/459 (57%), Gaps = 12/459 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ WYDYET G+N R DRP Q A IRTD LN I P+ +YC+P+ D LP P ACL+T
Sbjct: 2 TSSIFWYDYETTGINPRCDRPLQVAGIRTDEALNEIGEPLNIYCRPSDDILPHPAACLVT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
I PQ G+ E +F + + PGT GYN++ FDDE+TR+ +RN +PY RE
Sbjct: 62 GIDPQRLQQLGLDEGEFMTRVHAALSTPGTCGAGYNSLRFDDEVTRYSLYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI++++ Y L P GI WP + +G+ S KLE L+ N + H +AHDALSDV
Sbjct: 122 WQGGNSRWDLIDLVRTAYALRPEGIEWP-EEDGRVSLKLERLTQANGIDHGQAHDALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+GLARL+R PRL++F+ LR K+ V+ +I + +P +I+ FS+ Y++ +
Sbjct: 181 RATIGLARLLRERQPRLYDFLYQLRSKQRVMDQIR--LLQPMLHISGRFSAARHYLAPVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L DP L D +R L ++ E +P+ ++H+NR
Sbjct: 239 PLAWHPRNRNALIVCDLQADPTPLLDLDAEVLRSRLYTRREDLAEGEVPVPLKLLHINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLD-YKINNSDLELN 665
P V++ L VL R + D + +N++ + + +W+ D Y+ + +
Sbjct: 299 P-VVAPLSVLRDTDRQRLQLDWSHCERNVE---MLRDAQPLWQDKLTDIYREESFAASSD 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY+ FI +D +RS P+ L+N + F++ +L EL+F YRARNF ++LS
Sbjct: 355 PEQQLYDGFIGDRDRRLCEQVRSAQPQSLANDKWPFDDARLPELLFRYRARNFPDSLSPD 414
Query: 726 ELKRWKKYRISRFYNKKNNLYN-INMFYLEIESLLKKAN 763
E +RW + R + + N + F+ +E L N
Sbjct: 415 EGQRWVDFCRQRLSDPQFGAPNTLAQFHAALEQLRADCN 453
>gi|90416366|ref|ZP_01224298.1| exodeoxyribonuclease I [gamma proteobacterium HTCC2207]
gi|90332091|gb|EAS47305.1| exodeoxyribonuclease I [marine gamma proteobacterium HTCC2207]
Length = 478
Score = 345 bits (886), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 174/469 (37%), Positives = 275/469 (58%), Gaps = 10/469 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
++TF W+DYETFG+N DRP QFA +RTD LN I P+++YC+P PD LP P+ACL+T
Sbjct: 2 DNTFYWHDYETFGINPSIDRPSQFAGLRTDFDLNPIGEPLVIYCQPQPDLLPAPQACLVT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ L G+ E F I + + T SVGYN+I FDDE+TR+ +RN +PY+RE
Sbjct: 62 GITPQHALKEGLAEPAFIEAIHQQMSRANTCSVGYNSIRFDDEVTRYTLYRNFYDPYQRE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
WKN SRWD+I++++ L P GI WP G+PSF+LE L+ N L+H+ AHDALSDV
Sbjct: 122 WKNGNSRWDIIDMLRLCRALRPEGIEWPDHEPGRPSFRLEDLTAANGLAHEAAHDALSDV 181
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+L+++ PRLF++ L R KK V A + +PFF+I+ M + + Y +LM
Sbjct: 182 TATIAMAKLVKDKQPRLFDYALQNRGKKQVAAMLDLKARKPFFHISGMLAKEQLYGALMM 241
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N N +I ++L DP+ + + ++IRD + E IP+ +IH+N++
Sbjct: 242 PLAQHPTNSNGIICFDLSADPEALVSLNEHQIRDRVFTASADLPEGAERIPLKVIHINKA 301
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNI 666
P+V ++ K++ + R DL +N + SS+ + K+ L ++ + +
Sbjct: 302 PVVTTH-KLVDTATAKRLDIDLERCERNWQRLSSM----DLSDKLQLVFREQKFPPKSDA 356
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+++LY F+ +D L +R + S F F +++ +L+F YRAR F E+LS +E
Sbjct: 357 EQQLYGGFLPNQDKGLLDDVRRATASDFSQQQFYFADQRYNQLLFSYRARYFPESLSAEE 416
Query: 727 LKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKA--NEHDTKILNAL 773
+ W + R ++++ + ++ LL ++H +L AL
Sbjct: 417 QQTWLESCRWRLTDEQSGYLTLQQNRRTLDQLLADTSLSDHKRGVLQAL 465
>gi|56460478|ref|YP_155759.1| exonuclease I [Idiomarina loihiensis L2TR]
gi|56179488|gb|AAV82210.1| Exonuclease I [Idiomarina loihiensis L2TR]
Length = 479
Score = 345 bits (886), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 173/479 (36%), Positives = 264/479 (55%), Gaps = 9/479 (1%)
Query: 305 LLHNGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPR 364
+ N TF W+DYET+G N DRP QFA +RTD N I P+ LY +P PDFLP+P
Sbjct: 1 MAQNEQETFYWHDYETWGANPLVDRPAQFAGLRTDTDFNVIGRPLTLYAQPTPDFLPNPE 60
Query: 365 ACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLIN 424
A LIT ITPQ G+ E +F+ I F KP T +GYN I FDDE+TR +F+RN +
Sbjct: 61 ATLITGITPQLAAKQGVGEAEFSKAIANEFQKPNTTIIGYNNIRFDDEVTRLLFYRNFYD 120
Query: 425 PYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHD 484
PYE W+N SRWDLI+V++A + L P GI WP ++G+PS KLEHLS NN+ H +AHD
Sbjct: 121 PYEYSWQNGNSRWDLIDVVRACFALRPDGINWPENSDGQPSLKLEHLSVANNIEHGQAHD 180
Query: 485 ALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSY 544
A+SDV AT+GLA+LI P+L+ + S+R+K+ +L W P +++ + + + Y
Sbjct: 181 AMSDVYATIGLAKLISEKQPKLWQWAYSIRRKQKLLNLFNWQAPEPLAHVSGFYGTANRY 240
Query: 545 ISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED----IPISM 600
+S + P+ HP + ++ W+L P F + ++ + + +E I
Sbjct: 241 LSAILPLGFHPKQNSNVVAWDLRVPPMDFADKSVEELTELTYTSRRELEEQGLQKSGIQN 300
Query: 601 IHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS 660
IHL R P ++ +K +S+ D N K N+ + K + + +
Sbjct: 301 IHLGRCPF-LAPIKTISAEAADSAALDTAALETNAKWLQE--NSDFRDKLMQVFEQTKEF 357
Query: 661 DLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIE 720
++D ++Y+ F S +D + I+RS P +L+ + F++K++ L+F YRARN+
Sbjct: 358 APRTDVDHQIYDGFFSPQDKKHMEIIRSSEPHQLAGLELDFQDKRMPALLFRYRARNYPS 417
Query: 721 TLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANE--HDTKILNALLMYG 777
TLS KEL +W+ + R L + F L++E L + E H ++L +L Y
Sbjct: 418 TLSDKELNKWRLFCQQRLIEPPEGLLSAEGFALKLEDLANQHQEDAHKLRLLKSLYDYA 476
>gi|315126831|ref|YP_004068834.1| exonuclease I [Pseudoalteromonas sp. SM9913]
gi|315015345|gb|ADT68683.1| exonuclease I [Pseudoalteromonas sp. SM9913]
Length = 481
Score = 345 bits (886), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 182/479 (37%), Positives = 278/479 (58%), Gaps = 17/479 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+T W+DYET+G + ++D+P QFA +RTD+ LN I P++ YCKP D+LP P ACLIT
Sbjct: 8 QATIYWHDYETWGASPQKDKPSQFAGVRTDLDLNIIGEPLIEYCKPQADYLPHPEACLIT 67
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ + G+ E +F + I F P T GYN+I FDDE++R+ F+RN +PYERE
Sbjct: 68 GITPQVAMQKGLVEAEFIAKIHAEFSVPNTCVAGYNSIRFDDEVSRYSFYRNFYDPYERE 127
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
+KNN SRWD+I++++A Y L P GI WP K +G PSFKLEHL+ N + H AHDALSDV
Sbjct: 128 YKNNNSRWDIIDLVRACYALRPEGIEWPLKEDGSPSFKLEHLTVANGIEHAAAHDALSDV 187
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ LA+LI+ P+L++F SLR KK + + P + + + + +
Sbjct: 188 TATIALAKLIKEKQPKLYHFFFSLRNKKALAELVDVFNMTPLVHTSSRIPATQGCTTWVA 247
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE-DIPIS--MIHLNRS 606
P+ HP+NKN +I ++L +P+ L ++ ++R L K+ E D+P+ ++HLN+
Sbjct: 248 PMSFHPVNKNAVICFDLTQNPQVLLDLNVEQLRKRLYTKRIDLAEGDLPVGLKLVHLNKC 307
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDLELN 665
PI+ +L N R D N+ + NT + K+ + + + N
Sbjct: 308 PILAPAKTLLPENAA-RLGIDREQCLANLAILKA---NTELRDKVTEVFNEQGDYSATTN 363
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D LY+ F S D K AI+R P+ L+++ FE+ K L+F YRARN+ +TL+ +
Sbjct: 364 VDYLLYDGFTSHADKAKFAIIRDAKPEDLASLKLEFEDPKFNTLLFRYRARNWPQTLNQQ 423
Query: 726 ELKRWKKYRISRFYNKKNNLY-NINMFYLEIESLLKKANEHDTK-----ILNALLMYGK 778
EL +W++Y S+ + ++ + F + +E+L A+EHD IL AL Y +
Sbjct: 424 ELDQWRQYCQSKLMHGEDQPSISAQDFMITLENL---AHEHDDSEKNLTILKALYNYAQ 479
>gi|398851219|ref|ZP_10607907.1| exonuclease I [Pseudomonas sp. GM80]
gi|398247040|gb|EJN32505.1| exonuclease I [Pseudomonas sp. GM80]
Length = 476
Score = 345 bits (885), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 168/425 (39%), Positives = 254/425 (59%), Gaps = 10/425 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ WYDYET G+N R DRP Q A IRTD LN ID P+ LYC+P+ D LP P AC IT
Sbjct: 2 TSIFWYDYETTGINPRNDRPLQVAGIRTDHELNEIDAPVNLYCQPSEDILPHPAACAITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPSQLAEKGLSEADFMTRVHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+V++A Y L P G+ WP + G+ + KLE L+ N++ H AH+ALSDVR
Sbjct: 122 QGGNSRWDLIDVVRAAYALRPDGLVWPTDDEGRVTLKLERLTAANHIDHGHAHEALSDVR 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARLIR P+L++++ LR K+ V+ +I + +P +I+ FS+ SY+ ++ P
Sbjct: 182 ATIALARLIREKQPKLYDWLFQLRSKQKVMDQIR--LLQPLVHISGRFSAARSYVGVVMP 239
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP N+N LI +L DP+ L D +R L +++ E +P+ +IH+NR P
Sbjct: 240 LAWHPKNRNALIVCDLHLDPQGLLDLDAQTLRQRLYTRRDDLLEGELPVPLKLIHINRCP 299
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELNI 666
V++ L VL + R D+ A + A + + +WK K+ Y + +
Sbjct: 300 -VVAPLSVLRAEDQQRLGLDM--ALYQAR-ALRLTDAQQVWKDKVAAIYASEDFTPSEDP 355
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+++LY+ FI +D +R+ P +L+ + F++++L EL+F YRARNF +TL+ +E
Sbjct: 356 EQQLYDGFIGDRDRRLCEQVRASDPAQLAQEQWPFDDERLPELLFRYRARNFPDTLNSEE 415
Query: 727 LKRWK 731
+RW+
Sbjct: 416 QERWR 420
>gi|254449147|ref|ZP_05062598.1| exodeoxyribonuclease I [gamma proteobacterium HTCC5015]
gi|198261261|gb|EDY85555.1| exodeoxyribonuclease I [gamma proteobacterium HTCC5015]
Length = 474
Score = 345 bits (885), Expect = 1e-91, Method: Composition-based stats.
Identities = 171/463 (36%), Positives = 269/463 (58%), Gaps = 7/463 (1%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+ TF WYD ETFG + + R QFA RTD LN I +P+++YC+P+PDFLPDP ACLIT
Sbjct: 2 SQTFYWYDLETFGTDPKTTRIAQFAGQRTDADLNPIGDPLVIYCQPSPDFLPDPEACLIT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G+PE +F I + F +P T +GYN++ FDDE R+ F+RN I+PY RE
Sbjct: 62 GITPQVAAREGLPESEFIQRIHREFSQPNTCVLGYNSLRFDDEFMRYGFYRNFIDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+N CSRWDLI+V++ L P GI WP+ +G PS KLE L+ N L H KAHDA SD+
Sbjct: 122 WQNGCSRWDLIDVVRLTRALRPEGIEWPFHEDGTPSNKLEDLTQANGLVHSKAHDAYSDI 181
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+ I+ P+L+ F L R K+ + ++ P +I+ M+ ++ + +++
Sbjct: 182 EATIAVAKRIKEKQPKLWQFCLHNRDKRKLAGQLKVAAKEPVVHISGMYGNERASTAIVV 241
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSF--KEDIPISMIHLNRSP 607
P+ HP NKN +I ++L HDP + + D I + + ++ KE +P+ +HLN+ P
Sbjct: 242 PVARHPSNKNGIIVYDLAHDPAELIALDSAAIAERVFTRREDLGDKERLPLKTVHLNKCP 301
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
VI+ L LS R D+ I+ I + + +++ + D + D
Sbjct: 302 -VIAPLSTLSEEAAQRLGIDIEEQVARIETLKPIDD---LEQRVQAAFGQQQFDPITDPD 357
Query: 668 EELY-NNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+ LY FI D + + S SP++LSN++ F++K+L EL+F +RARN+ +L E
Sbjct: 358 QSLYGGGFIGDSDKALMRQIHSASPEQLSNLDLPFQDKRLPELLFRFRARNYPMSLDSDE 417
Query: 727 LKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI 769
+RW + ++ K+ N++ F ++ +L ++ D+K+
Sbjct: 418 QQRWAELCREHIHDGKSGYLNLDQFQNKLMALAQEYEHDDSKL 460
>gi|425901158|ref|ZP_18877749.1| exodeoxyribonuclease I [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|397883538|gb|EJL00025.1| exodeoxyribonuclease I [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
Length = 476
Score = 345 bits (885), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 172/453 (37%), Positives = 258/453 (56%), Gaps = 14/453 (3%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ WYDYET G+N R DRP Q A IRTD LN I P+ LYC+P+ D LP P AC+IT
Sbjct: 2 TSIFWYDYETTGINPRCDRPLQVAGIRTDFELNEIGEPVNLYCQPSDDILPHPAACMITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPGRLAEQGLSEADFMTRVHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+V++ Y L P GI WP G+ + KLE L+ N + H AH+ALSDVR
Sbjct: 122 QGGNSRWDLIDVVRTAYALRPEGIVWPRDEEGRVTLKLERLTAANGIDHGHAHEALSDVR 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARLIR+ P+L+ ++ LR K+ V+ ++ + +P +I+ FS+ SY+ ++ P
Sbjct: 182 ATIALARLIRDKQPKLYEWLFQLRSKQKVMDQVR--LLQPLVHISGRFSAARSYVGVVLP 239
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP N+N LI +L DP+ L D +R L ++ E +P+ +IH+NR P
Sbjct: 240 LAWHPRNRNALIVCDLHLDPQGLLELDAETLRQRLYTRREDLAEGELPVPLKLIHINRCP 299
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELNI 666
V++ L VL R + D+ +K A + + +W+ K+ Y + ++
Sbjct: 300 -VVAPLNVLRGEDQQRLQLDM-AEYKAR--ALRLSDAQEVWRDKLAAIYASEDFAPSVDP 355
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+++LY+ FI +D +R+ P L + F++++L EL+F YRARNF ETL+ +E
Sbjct: 356 EQQLYDGFIGDRDRRLCEQVRNAEPLHLGQEQWPFDDERLPELLFRYRARNFPETLNGEE 415
Query: 727 LKRWKKYRISRF----YNKKNNLYNINMFYLEI 755
+RWK + R + N L + N E+
Sbjct: 416 QERWKSFCQQRLCDPQWGAPNTLESFNQAAAEL 448
>gi|398995466|ref|ZP_10698349.1| exonuclease I [Pseudomonas sp. GM21]
gi|398129840|gb|EJM19194.1| exonuclease I [Pseudomonas sp. GM21]
Length = 476
Score = 345 bits (885), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 174/468 (37%), Positives = 268/468 (57%), Gaps = 13/468 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ WYDYET G+N R DRP Q A IRTD LN ID P+ LYC+P+ D LP P AC IT
Sbjct: 2 TSIFWYDYETTGINPRCDRPLQVAGIRTDFDLNEIDEPVNLYCQPSDDILPHPAACAITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPGQLAGQGLSEADFMTRVHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+V++A Y L P G+ WP + G+ + KLE L+ N + H AH+ALSDVR
Sbjct: 122 QGGNSRWDLIDVVRAAYALRPDGLVWPTDDEGRVTLKLERLTAANGIDHGNAHEALSDVR 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARLIR P+L++++ LR K+ V+ +I + +P +I+ FS+ SY+ ++ P
Sbjct: 182 ATIALARLIREKQPKLYDWLFKLRSKQKVMDQIR--LLQPMVHISGRFSAARSYVGVVLP 239
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP NKN LI +L DP+ L D +R L +++ E +P+ +IH+N+ P
Sbjct: 240 LAWHPRNKNALIVCDLHLDPQGLLDLDAETLRQRLYIRRDDLAEGELPVPLKLIHINKCP 299
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELNI 666
V++ L VL + R D+ + A +++ +W+ K+ Y + +
Sbjct: 300 -VVAPLSVLRPDDQQRLGLDMALYQER---ALRLIDAQQVWRDKVQAIYTSEDFTPSQDP 355
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+++LY+ FI +D +R+ P +L+ + F++++L EL+F YRARNF +TL+ +E
Sbjct: 356 EQQLYDGFIGDRDRRLCEQVRAADPAQLAQEQWPFDDERLPELLFRYRARNFPDTLNSEE 415
Query: 727 LKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALL 774
+RW+ + R + + + E + L NE T + A+L
Sbjct: 416 QERWRLFCQKRLSAPEWGAPHTLKSFTEAAAQL---NETATPLQRAVL 460
>gi|422590676|ref|ZP_16665329.1| exonuclease I [Pseudomonas syringae pv. morsprunorum str. M302280]
gi|330877835|gb|EGH11984.1| exonuclease I [Pseudomonas syringae pv. morsprunorum str. M302280]
Length = 476
Score = 345 bits (884), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 174/437 (39%), Positives = 259/437 (59%), Gaps = 11/437 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ WYDYET G+N R DR Q A IRTD LN I P+ LYC+P+ D LP P AC+IT
Sbjct: 2 TSSIFWYDYETTGINPRNDRALQMAGIRTDAELNEIAPPVNLYCQPSDDILPHPAACVIT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITP G+ E F + + PGT GYNT+ FDDE+TR+ F+RN +PY RE
Sbjct: 62 GITPATLAEKGLCEADFMTRVHAELAAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI+V++A Y L P GI WP + +G+ + KLE L+ N + H +AHDALSDV
Sbjct: 122 WQGGNSRWDLIDVVRAAYALRPEGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR PRL++++ +LR K+ V I + +P +I+ FS+ SY+ ++
Sbjct: 181 RATIALARLIREKQPRLYDYLFTLRTKQKVQEHIH--LMKPLVHISGRFSAARSYLGVVV 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L D L D ++ L + ++ KE +P+ ++H+NR
Sbjct: 239 PLAWHPHNRNALIVCDLHLDHSPLLQCDAETLKQRLYTRLDALKEGELPVPLKLLHINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELN 665
P VI+ L VL S R K D+ A + A+ + N +W+ K+ + Y ++ +
Sbjct: 299 P-VIAPLGVLRSEDQQRLKLDM--AGYQAR-AAQLSENREVWQDKLQVLYGKDDFVASED 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY+ FI +D +R P++L+ + F++ +L +L+F YRARNF ETLS +
Sbjct: 355 PEQQLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPDLLFRYRARNFPETLSAE 414
Query: 726 ELKRWKKYRISRFYNKK 742
E RW+ + R + +
Sbjct: 415 EQHRWQDFCRQRLSSPE 431
>gi|333899170|ref|YP_004473043.1| exodeoxyribonuclease I [Pseudomonas fulva 12-X]
gi|333114435|gb|AEF20949.1| Exodeoxyribonuclease I [Pseudomonas fulva 12-X]
Length = 480
Score = 345 bits (884), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 176/472 (37%), Positives = 267/472 (56%), Gaps = 11/472 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
S+ WYDYET G++ RRDRP Q A IRTD LN ID PI LYC+P D LP P AC+IT
Sbjct: 3 SSLFWYDYETTGIDPRRDRPLQVAGIRTDEQLNEIDTPINLYCQPGDDILPHPAACMITG 62
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
I P G+ E +F + + +PGT VGYN++ FDDE+TR+ +RN +PY REW
Sbjct: 63 IGPDRLAREGLSEAEFMTRVHAELARPGTCGVGYNSLRFDDEVTRYSLYRNFFDPYAREW 122
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI++++ Y L P GI WP +G S KLE L+ N + H +AHDALSDVR
Sbjct: 123 QGGNSRWDLIDMVRTAYALRPEGIEWPQDEHGV-SLKLERLTAANGIDHGQAHDALSDVR 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARLIR P+L++++ LR K+ VL +I + +P +++ FS Y++++ P
Sbjct: 182 ATIALARLIRERQPKLYDYLYGLRSKQQVLDQIR--LLQPLVHVSGRFSGARHYLAVVLP 239
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDIPIS--MIHLNRSPI 608
+ HP N+N LI +L D D + +R L +++ ++P+ +IH+NR P
Sbjct: 240 LAWHPRNRNALIVCDLHLDTAPLHDEDADTLRQRLYTRRDELGGELPVPLKLIHINRCP- 298
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELNID 667
V++ L VL R + D K + +N W+ K+ Y + ++ +
Sbjct: 299 VVAPLGVLRDEDCQRLQLDKTELQARAK---RLADNQEQWRDKLPQVYTEESFASVMDPE 355
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
++LY+ FI +D +R+ P +L+ ++ F++ +L EL+F YRARNF TLS ++
Sbjct: 356 QQLYDGFIGDRDRRLCEQVRNCDPSQLAAQSWPFDDARLPELLFRYRARNFATTLSSEDQ 415
Query: 728 KRWKKYRISRFYNKKNNLYN-INMFYLEIESLLKKANEHDTKILNALLMYGK 778
+RW + R + N + F E+ L +ANE L+A L + +
Sbjct: 416 QRWHAFCRQRLTLPELGAPNTLVSFETEMARYLTEANESQQATLHAWLAHAQ 467
>gi|226945876|ref|YP_002800949.1| exonuclease I [Azotobacter vinelandii DJ]
gi|226720803|gb|ACO79974.1| Exodeoxyribonuclease I [Azotobacter vinelandii DJ]
Length = 476
Score = 345 bits (884), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 172/475 (36%), Positives = 274/475 (57%), Gaps = 14/475 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ WYDYET G+N R DRP Q A IRTD LN I P+ LYC+PA D LP P ACL+T
Sbjct: 2 TSSIFWYDYETTGINPRCDRPLQVAGIRTDEALNEIGAPLNLYCRPADDILPHPAACLVT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITP+ G+ E +F + + PGT + GYN++ FDDEI+R +RN +PY RE
Sbjct: 62 GITPRLLAERGLCEAEFVTRLHAELALPGTCTAGYNSLRFDDEISRHALYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI++++ Y L P GI WP + G+ S +LE L+ N + H +AHDAL+DV
Sbjct: 122 WQAGNSRWDLIDLLRTAYALRPEGIHWP-QEEGRVSLRLERLTAANGIEHGQAHDALADV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARL+R P+L+ ++ LR K+ VL +I + RP +++ F+++ Y++++
Sbjct: 181 RATIALARLLRERQPKLYGYLYQLRSKQRVLDQIR--LLRPLVHVSGRFAAERGYLAVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L DP L D +R L ++ ++ +P+ ++H+NR
Sbjct: 239 PLAWHPSNRNALIVCDLQADPSPLLDLDAEILRRRLYMRREELADNESPVPLKLVHINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIK--CASSILNNTYIWKKIFLDYKINNSDLEL 664
P V++ L VL + R + D+ + ++ CA+ + +I++ + S+
Sbjct: 299 P-VLAPLSVLREEDIGRLRVDMAECQRRVELLCAAQGQWQEKL-ARIYMGDEFPASE--- 353
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
+ +++LY F ++D +R P+ L N+ F++++L EL+F YRARNF ETL+
Sbjct: 354 DPEQQLYGGFFGERDRRLCEQVRRAEPESLGRQNWGFDDERLPELLFRYRARNFPETLTA 413
Query: 725 KELKRWKKYRISRFYNKK-NNLYNINMFYLEIESLLKKANEHDTKILNALLMYGK 778
E + W+++ R + + F +++E LL +A+E IL A Y +
Sbjct: 414 AEGECWQEFCRRRLSDAAWGAPCTLGDFNVQLEQLLAQADEEHRPILVAWREYAR 468
>gi|409417708|ref|ZP_11257734.1| exonuclease I [Pseudomonas sp. HYS]
Length = 476
Score = 344 bits (883), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 167/467 (35%), Positives = 274/467 (58%), Gaps = 12/467 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+S+ W+DYET G+N R DRP Q A +RTD+ LN I+ PI YC+P+ D LP P+ACL+T
Sbjct: 2 SSSIFWHDYETTGINPRNDRPLQVAGVRTDLELNEIEAPINFYCQPSDDILPHPKACLVT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ + G+ E +F + + +PGT GYN++ FDDE+TR+ +RN +PY RE
Sbjct: 62 GITPQQLASQGLSEAEFMTRVHAELARPGTCGAGYNSLRFDDEVTRYSLYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
+ SRWDLI++++A Y L P GI WP + +G+ S +LE L+ N + H +AH+ALSDV
Sbjct: 122 GRGATSRWDLIDIVRAAYALRPDGIEWP-QQDGRTSLRLELLTAANGIDHGQAHEALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR P+L++++ LR K+ VL +I + +P +I+ FS+ +Y+ ++
Sbjct: 181 RATIALARLIRQKQPKLYDWLFQLRSKQKVLDQIR--LLQPLVHISGRFSAARNYLGVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L D + + D + +R L ++ + +P+ +IH+NR
Sbjct: 239 PLAWHPRNRNALIVCDLHLDAQPLIDEDADSLRQRLYTRREEMPDGQLPVPLKLIHINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELN 665
P V++ L VL R + D++ A+S++ W+ K+ + Y +
Sbjct: 299 P-VVAPLSVLRGEDQQRLELDMSVYQAR---AASLIATAGQWQDKLPVIYSAEEFAPSED 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY+ F+ +D +RS+ P++L + F++++L EL+F YRARNF ETL+ +
Sbjct: 355 PEQQLYDGFLGDRDRRLCEQVRSVDPQQLGQGQWMFDDERLPELLFRYRARNFNETLNAE 414
Query: 726 ELKRWKKYRISRFYNKKNNLYN-INMFYLEIESLLKKANEHDTKILN 771
E +RW+ + R + N + F ++ +A+ +L
Sbjct: 415 ERQRWQTFCQQRLSDPLMGAPNTLGDFERALQDCWAEADAQQQALLG 461
>gi|375108578|ref|ZP_09754833.1| exonuclease I [Alishewanella jeotgali KCTC 22429]
gi|374571369|gb|EHR42497.1| exonuclease I [Alishewanella jeotgali KCTC 22429]
Length = 477
Score = 344 bits (883), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 183/474 (38%), Positives = 272/474 (57%), Gaps = 11/474 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F +YD+ET+G + ++DRP QFA IRTD LN I P M YC+ A D+LP P A LIT +
Sbjct: 6 SFYFYDFETWGADPKKDRPAQFAGIRTDHELNIIGEPEMWYCQLANDYLPHPAAALITGL 65
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C G+ E +F I F P T +GYN++ FDDE+TR+ +RN + Y REW+
Sbjct: 66 TPQLCNKKGLVETEFMQRILNAFSTPNTCVLGYNSLRFDDEVTRYGLYRNFYDVYGREWQ 125
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
SRWDLI++++A Y L P GI WP +++G PSFKLE L+ NNL H AHDALSDV A
Sbjct: 126 QGNSRWDLIDLVRACYALRPEGINWPLRDDGSPSFKLEQLTKANNLEHSAAHDALSDVYA 185
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF+++ LRKK+ V I P +I+ F + S + P+
Sbjct: 186 TIAIAKLIKQQQPKLFHYLFELRKKQKVAELIDVAGLTPLVHISSKFPATQGCASWIVPL 245
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN +I +NL DP+ L +D+ ++ L K + E + + +IHLN+ P
Sbjct: 246 AYHPSNKNAVICYNLQLDPRALLDDDLATLQQKLYRKSSELAEGEQRLGLKLIHLNKCP- 304
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDLELNID 667
V++N K LS+ D N +++ + N + +K+ Y + + E N D
Sbjct: 305 VLANAKTLSAERATELGIDRNQCLHHLEW---LRQNRQLQQKVVELYQQAGDYGAETNPD 361
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LYN FIS D K+ L + P L+ + F ++L L FLYRARN+ +L+ EL
Sbjct: 362 YQLYNGFISDADKQKMQQLHQLDPASLTADSLIFSEERLNRLYFLYRARNYPLSLTDSEL 421
Query: 728 KRWKKYRISRFYNKKNNL-YNINMFYLEIESLLKK--ANEHDTKILNALLMYGK 778
++W++YR + + +N + F L +E+L + A+E IL AL Y +
Sbjct: 422 QKWQRYRTDKLMHGLDNPNLTLEQFSLALENLAHEHSADEQKMAILKALYRYAE 475
>gi|152988725|ref|YP_001350220.1| exonuclease I [Pseudomonas aeruginosa PA7]
gi|452881037|ref|ZP_21957903.1| exonuclease I [Pseudomonas aeruginosa VRFPA01]
gi|150963883|gb|ABR85908.1| exodeoxyribonuclease I [Pseudomonas aeruginosa PA7]
gi|452182642|gb|EME09660.1| exonuclease I [Pseudomonas aeruginosa VRFPA01]
Length = 478
Score = 344 bits (882), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 176/473 (37%), Positives = 267/473 (56%), Gaps = 12/473 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
N++ WYDYET G++ RRDRP Q A IRTD LN I P+ LYC+P+ D LP P ACLIT
Sbjct: 2 NASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLIT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G+ E F + + P T GYN++ FDDE+TR+ +RN +PY RE
Sbjct: 62 GITPQRLAERGLSEADFMTRVHAQLAHPATCVAGYNSLRFDDEVTRYSLYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI++++ Y L P GI WP + +G+ S KLE L+ N L H +AHDALSDV
Sbjct: 122 WQGGNSRWDLIDMVRTAYALRPEGIQWP-EADGRVSLKLELLTAANGLEHGQAHDALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR PRL++++ LR K VL +I + +P +++ FS++ ++S++
Sbjct: 181 RATIALARLIRQRQPRLYDYLYQLRSKHRVLDQIH--LLQPLVHVSGRFSAERHFLSVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L DP L ++R L +++ E +P+ I +NR
Sbjct: 239 PLAWHPRNRNALIVCDLRADPAPLLELSAEELRRRLYTRRDELAEGELPVPLKQIQVNRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIW-KKIFLDYKINNSDLELN 665
P V++ L VL + R D+ + A + W +K+ L Y + +
Sbjct: 299 P-VVAPLSVLRAEDRLRTGIDVEACQRR---AELLRQRQAAWTEKLALAYSEESFAASED 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY+ FI +D LR P++L+ + F++ +L+EL F YRARNF ETLS
Sbjct: 355 PEQQLYDGFIGDRDRRLCEQLRRAEPEQLAREQWPFDDIRLQELFFRYRARNFPETLSPS 414
Query: 726 ELKRWKKYRISRFYNKKNNLYN-INMFYLEIESLLKKANEHDTKILNALLMYG 777
E ++W+ + +R +++ N + F +E+ ++ +L A Y
Sbjct: 415 ERQQWEAFCRNRLSHEEFGAPNTLPAFEAAMEACRQEQGGTLPAVLAAWRDYA 467
>gi|398841731|ref|ZP_10598940.1| exonuclease I [Pseudomonas sp. GM102]
gi|398107659|gb|EJL97654.1| exonuclease I [Pseudomonas sp. GM102]
Length = 476
Score = 344 bits (882), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 170/453 (37%), Positives = 264/453 (58%), Gaps = 10/453 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ WYDYET G+N R DRP Q A IRTD LN ID P+ LYC+P+ D LP P AC IT
Sbjct: 2 TSIFWYDYETTGINPRCDRPLQVAGIRTDFDLNEIDEPVNLYCQPSDDILPHPAACAITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPGRLAEQGLSEADFMTRVHGQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+V++A Y L P G+ WP + G+ + KLE L+ N + H AH+ALSDVR
Sbjct: 122 QGGNSRWDLIDVVRAAYALRPDGLVWPKDDEGRVTLKLERLTAANGIDHGHAHEALSDVR 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARLIR P+L++++ LR K+ V+ +I + +P +I+ FS+ +Y+ ++ P
Sbjct: 182 ATIALARLIREKQPKLYDWLFQLRSKQKVMDQIR--LLQPMVHISGRFSAARNYVGVVLP 239
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP N+N LI +L DP+ L D +R L +++ E +P+ +IH+N+ P
Sbjct: 240 LAWHPRNRNALIVCDLHLDPQGLLDLDAEALRQRLYTRRDDLAEGELPVPLKLIHINKCP 299
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLD-YKINNSDLELNI 666
V++ L VL + + + L+ A + A + + +W+ D Y ++ +
Sbjct: 300 -VVAPLSVLRP--LDQQRLGLDMALYQER-ALRLSDAQQVWRDKVSDIYSSDDFSPSQDP 355
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+++LY+ FI +D +R+ P +L+ + F++++L EL+F YRARNF +TLS +E
Sbjct: 356 EQQLYDGFIGDRDRRLCEQVRAADPAQLAQEQWPFDDERLPELLFRYRARNFPDTLSLEE 415
Query: 727 LKRWKKYRISRFYNKKNNLYNINMFYLEIESLL 759
+RW+ + R + N +LE+ + L
Sbjct: 416 QERWRIFCQKRLCAPEWGAPNTLDSFLEVAAQL 448
>gi|389682140|ref|ZP_10173483.1| exodeoxyribonuclease I [Pseudomonas chlororaphis O6]
gi|388554014|gb|EIM17264.1| exodeoxyribonuclease I [Pseudomonas chlororaphis O6]
Length = 476
Score = 344 bits (882), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 177/476 (37%), Positives = 266/476 (55%), Gaps = 17/476 (3%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ WYDYET G+N R DRP Q A IRTD LN I P+ LYC+P+ D LP P AC+IT
Sbjct: 2 TSIFWYDYETTGINPRCDRPLQVAGIRTDFELNEIGEPVNLYCQPSDDILPHPAACMITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPGRLAEQGLSEADFMTRVHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+V++ Y L P GI WP G+ + KLE L+ N + H AH+ALSDVR
Sbjct: 122 QGGNSRWDLIDVVRTAYALRPEGIVWPRDEEGRVTLKLERLTAANGIDHGHAHEALSDVR 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LA+LIR+ P+L+ ++ LR K+ V+ +I + +P +I+ FS+ SY+ ++ P
Sbjct: 182 ATIALAKLIRDKQPKLYEWLFQLRSKQKVMDQIR--LLQPLVHISGRFSAARSYVGVVLP 239
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP N+N LI +L DP+ L D +R L ++ E +P+ +IH+NR P
Sbjct: 240 LAWHPRNRNALIVCDLHLDPQGLLDLDAETLRQRLYTRREDLAEGELPVPLKLIHINRCP 299
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELNI 666
V++ L VL R + D+ +K A + + +W+ K+ Y + L+
Sbjct: 300 -VVAPLNVLRGEDQQRLQLDM-AEYKAR--ALRLSDAQEVWRDKLAAIYASEDFAPSLDP 355
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+++LY+ FI +D +R+ P L + F++++L EL+F YRARNF +TL+ +E
Sbjct: 356 EQQLYDGFIGDRDRRLCEQVRNAEPVHLGQEQWPFDDERLPELLFRYRARNFPDTLNGEE 415
Query: 727 LKRWKKYRISRF----YNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGK 778
+RWK + R + N L + N E LL A ++L+ Y +
Sbjct: 416 QERWKTFCQQRLCDPQWGAPNTLESFNQAAAE---LLASATSIQRQVLDEWQDYSR 468
>gi|167035442|ref|YP_001670673.1| exonuclease I [Pseudomonas putida GB-1]
gi|166861930|gb|ABZ00338.1| Exodeoxyribonuclease I [Pseudomonas putida GB-1]
Length = 477
Score = 343 bits (881), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 173/474 (36%), Positives = 267/474 (56%), Gaps = 12/474 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+S+ W+DYET G+N R DRP Q A +RTD LN ID PI LYC+P+ D LP P ACL+T
Sbjct: 2 SSSIFWHDYETTGINPRCDRPLQVAGVRTDFDLNEIDEPISLYCRPSDDILPHPAACLVT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G+ E +F + + +PGT GYNT+ FDDE+TR+ +RN +PY RE
Sbjct: 62 GITPQLLAEQGLCEAEFMTQVYAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI++++ Y L P GI WP + +G+ S +LE LS N + H AH+ALSDV
Sbjct: 122 WQGGNSRWDLIDIVRTAYALRPDGIQWP-QQDGRTSLRLELLSKANGIDHGHAHEALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR P+L++++ LR K V+ +I + +P +I+ FS+ +Y+ ++
Sbjct: 181 RATIALARLIRQKQPKLYDWLFQLRSKHKVMEQIR--LLQPLVHISGRFSAARNYLGVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L H+ L +R L + + E +P+ ++ +NR
Sbjct: 239 PLAWHPRNRNALIVCDLHHETLPLLRESAEILRQRLYTRHDELAEGELPVPLKLVQINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELN 665
P V++ L VL R DL + N W+ K+ Y + +
Sbjct: 299 P-VLAPLSVLRPADQQRLGLDLTLLQSR---GEQLANQQAQWQDKLEHIYGKDEFAPSED 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY FI +D +R++ P +LS ++ F++ +L EL+F YRARNF ETL+ +
Sbjct: 355 PEQQLYEGFIGDRDRRLCEQVRALEPAQLSRGHWMFDDPRLPELLFRYRARNFPETLTSE 414
Query: 726 ELKRWKKYRISRFYNKKNNLYN-INMFYLEIESLLKKANEHDTKILNALLMYGK 778
EL+RW + R + + N + F + + A+E ++L A ++ +
Sbjct: 415 ELQRWYGFCQQRLSDPQWGAPNTLGDFEQARQQAWQGADEAGRRVLEAWQVHAR 468
>gi|300309795|ref|YP_003773887.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1]
gi|300072580|gb|ADJ61979.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1]
Length = 920
Score = 343 bits (881), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 155/270 (57%), Positives = 209/270 (77%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRAF+ALPD+RN + P GALYG I MLR+L +Y A+Y+AC+FDAKGK FR+
Sbjct: 8 VDGSSYLYRAFHALPDMRNAEGAPTGALYGIINMLRRLRNDYPASYVACVFDAKGKTFRD 67
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LYP YKATRK MP +L LQI IH V+A+GWPIL+++G+EADDVIGTL+ QA T L
Sbjct: 68 DLYPDYKATRKSMPEDLALQIEPIHAAVRALGWPILMVEGIEADDVIGTLSVQA-TAAGL 126
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
I+ST DKDMAQLV+ + L+N +N++ D + ++FGV PE+IVDY SLIGD DN+
Sbjct: 127 DTIVSTGDKDMAQLVNEHVTLVNTMSNEVLDIAGVTAKFGVPPERIVDYLSLIGDTVDNV 186
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L Y +L+ ++ NA+ I GV+G+NLR AL+WLP+ + ++T+KTDCD
Sbjct: 187 PGVEKCGPKTAVKWLTAYGTLDGVMANADKISGVVGENLRRALDWLPQGRVLVTVKTDCD 246
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L+ ++ SI ESL +QP+D+ +L +LF +YN
Sbjct: 247 LSAHMSSILESLTMQPQDKDVLKELFTRYN 276
>gi|212557300|gb|ACJ29754.1| Exodeoxyribonuclease I [Shewanella piezotolerans WP3]
Length = 470
Score = 343 bits (881), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 181/475 (38%), Positives = 276/475 (58%), Gaps = 22/475 (4%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+T W+DYETFG N +DRP QFA +RTD+ LN ID P+ YCK A D+LP P A LIT
Sbjct: 6 QNTLFWHDYETFGANPAKDRPSQFAGVRTDMELNIIDEPVTFYCKLANDYLPSPEAILIT 65
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G PE +F + + + F + T VGYN+I FDDE++R+ F+RN +PY RE
Sbjct: 66 GITPQLANQKGTPEAEFMAKVHQQFSQENTCVVGYNSIRFDDEVSRYGFYRNFFDPYARE 125
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+N SRWD+I++++A Y P GI WP K +G PSFKLE L+ N LSH+KAHDA+SDV
Sbjct: 126 WQNGNSRWDIIDLVRACYAFRPDGINWPQKEDGSPSFKLEQLTVANGLSHEKAHDAMSDV 185
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+G+A+LI++ P+LF++ SLRKK+ V I +P +++ S+ + +L+
Sbjct: 186 YATIGMAKLIKSVQPKLFDYYFSLRKKQEVSKLIDVLAMKPLVHVSSKISALNGCTTLIA 245
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED-IPISM--IHLNRS 606
P+ H NKN +I NL D + +IR+ + ++ ED +PI + IH+N+S
Sbjct: 246 PLAYHSTNKNAVICVNLAMDVTPLIELTAEQIRERMYTRREDLAEDELPIGLKQIHINKS 305
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCA---FKNIKCASSILNNTYIWKKIFLDYKINNSDLE 663
P ++ K L+ + R D A +K ++ I + D +I + DL+
Sbjct: 306 PF-LAGAKTLTDDNAARLDIDKAFAREQYKKLRLHPEIREKLVAVFDLQSDREIADPDLQ 364
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
L F S+ D K+ ++R+ P L+ + F++++L E++F YRARN+ ETL+
Sbjct: 365 L-----YSGGFFSQADKAKMEMIRNTKPMNLAALELTFDDERLPEMLFRYRARNYPETLN 419
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKA--NEHDTKILNALLMY 776
EL RW+++ R N + + +E+++++ NE K+L AL Y
Sbjct: 420 DSELLRWREFCQPRL--------NDPDYMIRLENIIEETEQNESKQKLLQALCHY 466
>gi|423093831|ref|ZP_17081627.1| exodeoxyribonuclease I [Pseudomonas fluorescens Q2-87]
gi|397887274|gb|EJL03757.1| exodeoxyribonuclease I [Pseudomonas fluorescens Q2-87]
Length = 478
Score = 343 bits (881), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 173/461 (37%), Positives = 265/461 (57%), Gaps = 15/461 (3%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ WYDYET G+N R DRP Q A IRTD LN ID P+ LYC+P+ D LP P AC IT
Sbjct: 2 TSIFWYDYETTGINPRCDRPLQVAGIRTDFELNEIDEPVNLYCRPSDDILPHPAACAITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPACLAEKGLSEADFMTRVHGHLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI++++A Y L P GI WP + G+ + KLE L+ N + H +AHDALSDVR
Sbjct: 122 QGGNSRWDLIDLVRAAYALRPQGIVWP-QEEGRVTLKLERLTAANGIDHGQAHDALSDVR 180
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARLIR PRL++++ LR K+ V+ ++ + +P +I+ FS++ +YI ++ P
Sbjct: 181 ATIALARLIRQKQPRLYDWLFQLRSKQKVMDQVR--LLQPMVHISGRFSAERNYIGVVLP 238
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP N+N LI +L DP+ L +D + +R L ++++ E +P+ +IH+N+ P
Sbjct: 239 LAWHPKNRNALIVCDLHLDPQGLLDHDADHLRQRLYTRRDALLEGELPVPLKLIHINKCP 298
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELNI 666
VI+ L VL + R + D+ + A + + +W+ K+ Y + +
Sbjct: 299 -VIAPLTVLRAEDQERLQLDMEGYRER---ALRLTDAQKVWQDKLEAIYGHEDFTASEDP 354
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+++LY F+ +D +R P +L+ + F++++L EL+F YRARNF +TLS +E
Sbjct: 355 EQQLYAGFMGDRDRRLCEQVRLADPAQLARERWPFDDERLPELLFRYRARNFADTLSPEE 414
Query: 727 LKRWKKYRISRF----YNKKNNLYNINMFYLEIESLLKKAN 763
RW+ + R + N L + + E L A
Sbjct: 415 QARWRVFCQQRLTAPQWGAPNTLQSFDEAMAEWTVLATPAQ 455
>gi|383936309|ref|ZP_09989737.1| exodeoxyribonuclease I [Rheinheimera nanhaiensis E407-8]
gi|383702689|dbj|GAB59828.1| exodeoxyribonuclease I [Rheinheimera nanhaiensis E407-8]
Length = 477
Score = 343 bits (880), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 182/476 (38%), Positives = 278/476 (58%), Gaps = 11/476 (2%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
N TF ++DYET+G + +RDRP QFA IRTD+ LN I P + YC+ A D+LP P+A L
Sbjct: 2 NQQPTFYFHDYETWGADPKRDRPAQFAGIRTDLDLNIIGEPDVWYCQLANDYLPHPQAAL 61
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
IT +TPQ C G+ E +F I F +P + +GYN + FDDE+TR+ +RN PY
Sbjct: 62 ITGLTPQLCNKKGLSETEFMQRILSRFSEPNSCVLGYNNLRFDDEVTRYSLYRNFYEPYG 121
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
REW+N SRWDLI++++A Y L P GI WP + +G PSFKLE L+ N L+H+ AHDALS
Sbjct: 122 REWQNGNSRWDLIDMVRACYALRPDGINWPRREDGSPSFKLEELTKANGLAHENAHDALS 181
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ +A+LI+ P+LF+++ LRKK V I P +++ F + +S
Sbjct: 182 DVYATIAIAKLIKQKQPKLFSYLFELRKKAKVAELIDVAGMTPLVHVSSKFPATQGCVSW 241
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSF---KEDIPISMIHLN 604
+ P+ HP NKN +I +NL DP L +D ++ L K ++ + + +IHLN
Sbjct: 242 VVPLAFHPTNKNAVICYNLQADPTPLLEDDSTTLQQKLYTKTADLADGEQRLGLKLIHLN 301
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL 664
+ P V++ K L+ ++ D K++ + K I L ++N +E
Sbjct: 302 KCP-VLAPAKTLTEERAAQFGIDRAQCLKHLDFLRQ--HRATQAKAIELYQQLNEFPVET 358
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N D +LY+ FIS D K+A L ++P++L+ F +++L L+FLYRARN+ L+
Sbjct: 359 NPDYQLYSGFISDGDKQKMAQLHQLTPEQLAVNAPVFSDERLNGLLFLYRARNYPYCLTD 418
Query: 725 KELKRWKKYRISRFYNKKNNLYNINM--FYLEIESLLKK--ANEHDTKILNALLMY 776
E ++W++YR + + +N N+ M F L +E+L + ++E KIL +L +Y
Sbjct: 419 SEQQKWQRYRTDKLMHGLDNP-NLTMEDFSLALENLAHEHASDEQKMKILKSLYLY 473
>gi|329895211|ref|ZP_08270875.1| Exodeoxyribonuclease I [gamma proteobacterium IMCC3088]
gi|328922449|gb|EGG29791.1| Exodeoxyribonuclease I [gamma proteobacterium IMCC3088]
Length = 480
Score = 343 bits (880), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 176/482 (36%), Positives = 280/482 (58%), Gaps = 26/482 (5%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+ TF W+DYETFG + +DRP QFA +RTD LN I +P+++Y +P PD+LP+P A L+T
Sbjct: 2 SDTFYWHDYETFGASPAKDRPCQFAGLRTDANLNVIGDPLVVYSRPTPDYLPNPMAVLVT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ L G+ E +F + I +P T VGYN++ FDDE+TR+ +RN +PY RE
Sbjct: 62 GITPQEALQKGLSEREFITRIHAELSQPLTCGVGYNSLRFDDEVTRYTLYRNFFDPYGRE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
+++ SRWDLI++++A Y L P GI WP ++G S KLE L+ N + H AHDAL DV
Sbjct: 122 YQDGNSRWDLIDLVRASYALRPEGIEWPMSDDGFMSAKLERLTAANGIEHAGAHDALVDV 181
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
+AT+ LA+LI+ P+LF + L LR K+ ++ RP +++ MF ++H+ I L+
Sbjct: 182 KATIELAKLIKTKQPKLFEYYLGLRFKRAAQDQLALGQWRPILHVSGMFGARHANIGLVV 241
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDIP-ISMIHLNRSPI 608
P HP NKN +IT +L P+K L +++R L + + P + IH+NR+P
Sbjct: 242 PAIQHPTNKNEIITIDLSQSPEKLLDYSADELRQRLYTPADQLDGERPALKSIHINRAPF 301
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCAS-----------SILNNTYIWKKIFLDYKI 657
V + K+++ + R DL +N+K ++L + Y K++
Sbjct: 302 V-APAKMMTDEVAARANLDLVALRENMKALQALMKERGNELLALLRDVYAHKRV-----A 355
Query: 658 NNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARN 717
+D E + LY F+S D ++S SP+ L+ +F FE+++L EL+F YRARN
Sbjct: 356 EPTDPEWD----LYGGFLSDGDRRLCDQIKSASPQILARSSFPFEDRRLGELLFRYRARN 411
Query: 718 FIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK---ILNALL 774
F +TLS E +W++Y R + L ++ + EI +++++ ++ D + +++AL
Sbjct: 412 FPDTLSLDEKMQWQEYCFERITREDQGLMHMERLFEEI-AVIRQVSDDDPRAMQLMDALE 470
Query: 775 MY 776
Y
Sbjct: 471 SY 472
>gi|407363426|ref|ZP_11109958.1| exonuclease I [Pseudomonas mandelii JR-1]
Length = 476
Score = 343 bits (879), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 169/453 (37%), Positives = 261/453 (57%), Gaps = 10/453 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ WYDYET G+N R DRP Q A IRTD LN ID P+ L+C+P+ D LP P AC IT
Sbjct: 2 TSIFWYDYETTGINPRCDRPLQVAGIRTDFDLNEIDEPVNLFCQPSDDILPHPAACAITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP +G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPSQLAEHGLSEADFMTRVHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+V++A Y L P G+ WP + G+ + KLE L+ N + H AH+ALSDVR
Sbjct: 122 QGGNSRWDLIDVVRAAYALRPDGLVWPTDDEGRVTLKLERLTAANGIDHGNAHEALSDVR 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARLIR P+L++++ LR K+ V+ +I + +P +I+ FS+ SY+ ++ P
Sbjct: 182 ATIALARLIREKQPKLYDWLFQLRGKQKVMDQIR--LLQPMVHISGRFSAARSYVGVVLP 239
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP NKN LI +L DP+ L D +R L +++ + +P+ +IH+N+ P
Sbjct: 240 LAWHPRNKNALIVCDLHLDPQGLLDLDAETLRQRLYTRRDDLADGELPVPLKLIHINKCP 299
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELNI 666
V++ L VL + R D+ + S + +W+ K+ Y + +
Sbjct: 300 -VVAPLSVLRPDDQQRLGLDMALYQDRVLRLS---DAQQVWRDKVLAIYASEDFTPSRDP 355
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+++LY+ FI +D +R+ P +LS + F++++L EL+F YRARNF +TL+ +E
Sbjct: 356 EQQLYDGFIGDRDRRLCEQVRAADPAQLSQQQWPFDDERLPELLFRYRARNFPDTLNSEE 415
Query: 727 LKRWKKYRISRFYNKKNNLYNINMFYLEIESLL 759
+RW+ + R + N ++E + L
Sbjct: 416 QERWQTFCQQRLSTPEWGAPNTLESFVEAAAQL 448
>gi|383816606|ref|ZP_09972000.1| exonuclease I [Serratia sp. M24T3]
gi|383294508|gb|EIC82848.1| exonuclease I [Serratia sp. M24T3]
Length = 476
Score = 343 bits (879), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 173/475 (36%), Positives = 274/475 (57%), Gaps = 15/475 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
TF ++DYETFG + DRP QFA +RTD N I+ P+++YC+P D+LP P A +IT
Sbjct: 7 QPTFYFHDYETFGTHPALDRPAQFAGVRTDADFNIIEEPLVIYCRPCDDYLPQPEAVMIT 66
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ L+ G+ E +FA+ I + F PGT VGYN I FDDE++R +F+RN +PY
Sbjct: 67 GITPQLALSRGLSEAEFAAQIHEAFSVPGTCIVGYNNIRFDDEVSRNIFYRNFYDPYAYS 126
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+N SRWDL++V++A Y L P GI WP + G PSF+LEHL+ N + H+ AHDA+SDV
Sbjct: 127 WQNGNSRWDLLDVMRACYALRPDGINWPENDEGFPSFRLEHLTRANGVEHENAHDAMSDV 186
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+L++ PRLF ++L R K + A I P P +++ MF + S +
Sbjct: 187 YATIAMAKLVKQAQPRLFEYLLEHRSKHKINALIDIPTMAPLVHVSGMFGAARGNTSWVA 246
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSF---KEDIPISMIHLNRS 606
P+ HP NKN +I +L D L D +++R+ L ++ + +PI ++H+N+
Sbjct: 247 PMAWHPENKNAVIVCDLAGDMAPLLELDSDQMRERLYSRREDLLPGQSPLPIKLLHINKC 306
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF-LDYKINNSDLELN 665
P++ +L N + R D +N++ + N+ + +K+ L + +
Sbjct: 307 PVLAPAKTLLPENAL-RLDIDRERCLQNLQL---LRQNSQVREKVVALFAEAEPYTPSED 362
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LYN F D + I++ +P+ L ++ F++ +LEEL+F +RARN+ TL+
Sbjct: 363 VDAQLYNGFFGDADRATMRIIQQTAPENLPALDLKFQDSRLEELLFRFRARNYPLTLTDA 422
Query: 726 ELKRWKKYRISRFYNKKNNLYNINMFYLEIESL--LKKANEHDTKILNALLMYGK 778
E +RW +R +K + + L++E+L L + + T +L AL YGK
Sbjct: 423 EQRRWLTHRQEALSPEK-----VQDYVLQLEALYNLHEEDAEKTALLKALFDYGK 472
>gi|399010047|ref|ZP_10712426.1| exonuclease I [Pseudomonas sp. GM17]
gi|398108071|gb|EJL98058.1| exonuclease I [Pseudomonas sp. GM17]
Length = 476
Score = 343 bits (879), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 173/459 (37%), Positives = 261/459 (56%), Gaps = 18/459 (3%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ WYDYET G+N R DRP Q A IRTD LN I P+ LYC+P+ D LP P AC+IT
Sbjct: 2 TSIFWYDYETTGINPRCDRPLQVAGIRTDFELNEIGEPVNLYCQPSDDILPHPAACMITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPGRLAEQGLSEADFMTRVHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+V++ Y L P GI WP G+ + KLE L+ N + H AH+ALSDVR
Sbjct: 122 QGGNSRWDLIDVVRTAYALRPEGIVWPRDEEGRVTLKLERLTAANGIDHGHAHEALSDVR 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARLIR+ P+L+ ++ LR K+ V+ ++ + +P +I+ FS+ SY+ ++ P
Sbjct: 182 ATIALARLIRDKQPKLYEWLFQLRTKQKVMDQVR--LLQPLVHISGRFSAARSYVGVVLP 239
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP N+N LI +L DP+ L D +R L ++ E +P+ +IH+NR P
Sbjct: 240 LAWHPRNRNALIVCDLHLDPQGLLDLDAETLRQRLYTRREDLAEGELPVPLKLIHINRCP 299
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTY-IWK-KIFLDYKINNSDLELN 665
V++ L VL R + D+ K + L++ +W+ K+ Y + ++
Sbjct: 300 -VVAPLNVLRGEDQQRLQLDM----AEYKARTLRLSDAQEVWRDKLAAIYASEDFAPSVD 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY+ FI +D +R+ P L + F++++L EL+F YRARNF ETL+ +
Sbjct: 355 PEQQLYDGFIGDRDRRLCEQVRNAEPLHLGQEQWPFDDERLPELLFRYRARNFPETLNGE 414
Query: 726 ELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANE 764
E +RWK + R + + N +ES + A+E
Sbjct: 415 EQERWKSFCQQRLCDPQWGAPNT------LESFNQAADE 447
>gi|157375752|ref|YP_001474352.1| exonuclease I [Shewanella sediminis HAW-EB3]
gi|157318126|gb|ABV37224.1| Exodeoxyribonuclease I [Shewanella sediminis HAW-EB3]
Length = 470
Score = 343 bits (879), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 181/475 (38%), Positives = 278/475 (58%), Gaps = 18/475 (3%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
+ N + W+DYETFG N +DRP QFA IRTD+ LN I +P+ YCK A D+LP P A L
Sbjct: 4 SNNPSIFWHDYETFGANPAKDRPSQFAGIRTDMDLNIIGDPVTFYCKVANDYLPSPEAIL 63
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
IT ITPQ GIPE +F + + +F +P T GYN+I FDDE++R+ F+RN +PY
Sbjct: 64 ITGITPQLANLKGIPEAEFMAKVHDLFSQPNTCVAGYNSIRFDDEVSRYGFYRNFYDPYA 123
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
REW+ SRWD+I++++A Y P GI WP K +G PSFKLEHL+ N+LSH+KAHDA+S
Sbjct: 124 REWQQGNSRWDIIDLVRACYAFRPDGIEWPVKEDGSPSFKLEHLTQANDLSHEKAHDAMS 183
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ +A+LI+ P+LF++ +LR+K+ V I +P +++ SS H ++
Sbjct: 184 DVYATIDMAKLIKQKQPKLFDYYFTLRRKQEVSKLIDVLNMQPLVHVSSKISSLHGCTTI 243
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED-IPISM--IHLN 604
+ P+ H NKN +I NL D + +++IR+ + ++ ED +PIS+ IH+N
Sbjct: 244 IAPVAHHSTNKNAIICVNLAMDISPLIELSVDQIRERMYTRRADLAEDELPISVKQIHIN 303
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL 664
+ P I++ K LS R D A + K + + + +K+ + +
Sbjct: 304 KCPF-IASAKTLSDENAERLNIDKAFAREQFKL---LKQHPELREKLVAVFDVEYESGST 359
Query: 665 NIDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
+ D +LY+ F S D K+ I+R SP+ L+ + F++ +L+E++F YR RN+ ET
Sbjct: 360 DPDLQLYSGGFFSSADKEKMEIIRHTSPQNLAALELEFDDSRLKEMLFRYRGRNYPETFD 419
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKA--NEHDTKILNALLMY 776
E RW+++ +R N + L++E+L+ + NE K+L AL Y
Sbjct: 420 EMESMRWREFCQARL--------NDPDYMLKLENLMNETAQNEDKQKLLTALCHY 466
>gi|28871453|ref|NP_794072.1| exodeoxyribonuclease I [Pseudomonas syringae pv. tomato str.
DC3000]
gi|28854704|gb|AAO57767.1| exodeoxyribonuclease I [Pseudomonas syringae pv. tomato str.
DC3000]
Length = 476
Score = 343 bits (879), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 173/437 (39%), Positives = 258/437 (59%), Gaps = 11/437 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ WYDYET G+N R DR Q A IRTD LN I P+ LYC+P+ D LP P AC+IT
Sbjct: 2 TSSIFWYDYETTGINPRNDRALQMAGIRTDAELNEIAPPVNLYCQPSDDILPHPAACVIT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITP G+ E F + + PGT GYNT+ FDDE+TR+ F+RN +PY RE
Sbjct: 62 GITPATLAEKGLCEADFMTRVHAELAAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI+V++A Y L P GI WP + +G+ + KLE L+ N + H +AHDALSDV
Sbjct: 122 WQGGNSRWDLIDVVRAAYALRPEGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR PRL++++ +LR K+ V I + +P +I+ FS+ SY+ ++
Sbjct: 181 RATIALARLIREKQPRLYDYLFTLRTKQKVQEHIH--LMKPLVHISGRFSAARSYLGVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L D L D ++ L + ++ KE +P+ ++H+NR
Sbjct: 239 PLAWHPHNRNALIVCDLHLDHSPLLQCDAETLKQRLYTRLDALKEGELPVPLKLLHINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELN 665
P VI+ L VL S R K D+ A + A+ + + +W+ K+ + Y ++ +
Sbjct: 299 P-VIAPLGVLRSEDQQRLKLDM--AGYQAR-AAQLSESLEVWQDKLQVLYGKDDFVASED 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY+ FI +D +R P++L+ + F++ +L +L+F YRARNF ETLS
Sbjct: 355 PEQQLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPDLLFRYRARNFPETLSAD 414
Query: 726 ELKRWKKYRISRFYNKK 742
E RW+ + R + +
Sbjct: 415 EQHRWQDFCRQRLSSPE 431
>gi|390952498|ref|YP_006416257.1| exonuclease I [Thiocystis violascens DSM 198]
gi|390429067|gb|AFL76132.1| exonuclease I [Thiocystis violascens DSM 198]
Length = 479
Score = 342 bits (878), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 162/442 (36%), Positives = 261/442 (59%), Gaps = 15/442 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+ TF W+DYET+G + RRDR QFA +RTD LN + +P++L+C+PA D LP P ACLIT
Sbjct: 2 SPTFYWHDYETWGADPRRDRACQFAGLRTDTDLNEVGDPLVLFCRPATDLLPQPEACLIT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G+ E +FA+ I +PGT VGYN++ FDDE+TR + +RNL +PY RE
Sbjct: 62 GITPQLAEREGLVEAEFAARIHAALSEPGTCGVGYNSLRFDDEVTRHLLYRNLYDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+N SRWDLI+ ++ + L P G+ WP +G SFKLE L+ N + H +AHDAL+DV
Sbjct: 122 WRNGNSRWDLIDTLRLAHALRPDGLEWPTHEDGTVSFKLEQLTAANAIGHAQAHDALADV 181
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKY---VLAEIGWPIARPFFYITHMFSSKHSYIS 546
RATL LAR +R PRLF++ L+LR K+ +LA+ P +++ + + ++
Sbjct: 182 RATLALARRLRQAQPRLFDYTLTLRDKRRGRDLLAK-----GEPLLHVSARYPAALGCLA 236
Query: 547 LMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHL 603
++P+ HP N N +I ++L DP + L + ++R L E +P+ +H+
Sbjct: 237 PVFPVAQHPTNGNGVICFDLRADPAQLLDLSVEELRARLFTPSAHLPEGVERVPLKTVHV 296
Query: 604 NRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLE 663
NR+P V++ LK L++ R++ D + + + ++ + I +++ +++ E
Sbjct: 297 NRAP-VLATLKTLTAQTAERWRIDPDQVVERARWIAASAAD--IQRRVQAAHQLPEGPAE 353
Query: 664 LNIDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
+ D LY+ F S +D L + +SP +L+ + FE+ +L ++F YRARN+ E+L
Sbjct: 354 TDPDLMLYSGGFFSDQDRRILDGMHRLSPAELAQASPVFEDARLPRMLFRYRARNWPESL 413
Query: 723 SYKELKRWKKYRISRFYNKKNN 744
+ +E + W R++R +
Sbjct: 414 TPEEREDWDAERLTRLTDPDGG 435
>gi|340785918|ref|YP_004751383.1| DNA polymerase I [Collimonas fungivorans Ter331]
gi|340551185|gb|AEK60560.1| DNA polymerase I [Collimonas fungivorans Ter331]
Length = 1165
Score = 342 bits (878), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 153/270 (56%), Positives = 211/270 (78%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRAF+ALPD+RN N P GA+YG I MLR+L +Y + Y+AC+FDAKGK FR+
Sbjct: 248 VDGSSYLYRAFHALPDMRNAANEPTGAMYGIINMLRRLRLDYPSAYLACVFDAKGKTFRD 307
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
+Y YKATR MP +L+ QI IH V+A+GWPIL+++GVEADDVIGTL QAVT H +
Sbjct: 308 DMYADYKATRASMPEDLVKQITPIHAAVRAMGWPILMVEGVEADDVIGTLTVQAVT-HGM 366
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
+ I+ST DKD+AQLV++ + LIN +N+ DR +I++FGV PE+IVDY +LIGD DN+
Sbjct: 367 QAIVSTGDKDLAQLVNDNVTLINTMSNETLDRAGVIAKFGVPPERIVDYLTLIGDTVDNI 426
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV K+GPKTAVK L QY++++ +I +A +I G +G+NLR L+WLPK K+++T+KTDCD
Sbjct: 427 PGVAKVGPKTAVKWLAQYDTVDQVIAHAADIGGAVGENLRQVLDWLPKAKELVTVKTDCD 486
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L+ ++VSIPESL +D++ L++LF +YN
Sbjct: 487 LSAHMVSIPESLKAPEQDKETLIELFTRYN 516
>gi|213970280|ref|ZP_03398410.1| exodeoxyribonuclease I [Pseudomonas syringae pv. tomato T1]
gi|301382938|ref|ZP_07231356.1| exonuclease I [Pseudomonas syringae pv. tomato Max13]
gi|302063791|ref|ZP_07255332.1| exonuclease I [Pseudomonas syringae pv. tomato K40]
gi|302133521|ref|ZP_07259511.1| exonuclease I [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|422659395|ref|ZP_16721821.1| exonuclease I [Pseudomonas syringae pv. lachrymans str. M302278]
gi|213924952|gb|EEB58517.1| exodeoxyribonuclease I [Pseudomonas syringae pv. tomato T1]
gi|331018014|gb|EGH98070.1| exonuclease I [Pseudomonas syringae pv. lachrymans str. M302278]
Length = 476
Score = 342 bits (878), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 172/428 (40%), Positives = 255/428 (59%), Gaps = 11/428 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ WYDYET G+N R DR Q A IRTD LN I P+ LYC+P+ D LP P AC+IT
Sbjct: 2 TSSIFWYDYETTGINPRNDRALQMAGIRTDAELNEIAPPVNLYCQPSDDILPHPAACVIT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITP G+ E F + + PGT GYNT+ FDDE+TR+ F+RN +PY RE
Sbjct: 62 GITPATLAEKGLCEADFMTRVHAELAAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI+V++A Y L P GI WP + +G+ + KLE L+ N + H +AHDALSDV
Sbjct: 122 WQGGNSRWDLIDVVRAAYALRPEGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR PRL++++ +LR K+ V I + +P +I+ FS+ SY+ ++
Sbjct: 181 RATIALARLIREKQPRLYDYLFTLRTKQKVQEHIH--LMKPLVHISGRFSAARSYLGVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L D L D ++ L + ++ KE +P+ ++H+NR
Sbjct: 239 PLAWHPHNRNALIVCDLHLDHSPLLQCDAETLKQRLYTRLDALKEGELPVPLKLLHINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELN 665
P VI+ L VL S R K D+ A + A+ + + +W+ K+ + Y ++ +
Sbjct: 299 P-VIAPLGVLRSEDQQRLKLDM--AGYQAR-AAQLSESLEVWQDKLQVLYGKDDFVASED 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY+ FI +D +R P++L+ + F++ +L +L+F YRARNF ETLS
Sbjct: 355 PEQQLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPDLLFRYRARNFPETLSAD 414
Query: 726 ELKRWKKY 733
E RW+ +
Sbjct: 415 EQHRWQDF 422
>gi|409409025|ref|ZP_11257460.1| DNA polymerase I protein [Herbaspirillum sp. GW103]
gi|386432347|gb|EIJ45175.1| DNA polymerase I protein [Herbaspirillum sp. GW103]
Length = 920
Score = 342 bits (878), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 155/270 (57%), Positives = 209/270 (77%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRAF+ALPD+RN + P GALYG I MLR+L +Y A+Y+AC+FDAKGK FR+
Sbjct: 8 VDGSSYLYRAFHALPDMRNAEGAPTGALYGIINMLRRLRNDYPASYVACVFDAKGKTFRD 67
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LYP YKATRK MP +L LQI IH V+A+GWPIL+++G+EADDVIGTL+ QA T L
Sbjct: 68 DLYPDYKATRKSMPEDLALQIEPIHAAVRALGWPILMVEGIEADDVIGTLSVQA-TAAGL 126
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
I+ST DKDMAQLV+ + L+N +N++ D + ++FGV PE+IVDY SLIGD DN+
Sbjct: 127 DTIVSTGDKDMAQLVNEHVTLVNTMSNEVLDIAGVTAKFGVPPERIVDYLSLIGDTVDNV 186
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L Y SL+ ++ NA+ I GV+G+NLR AL+WLP+ + ++T+KTDCD
Sbjct: 187 PGVEKCGPKTAVKWLTAYGSLDGVMANADKITGVVGENLRKALDWLPQGRVLVTVKTDCD 246
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L++++ SI ESL +QP+D+ +L +F +YN
Sbjct: 247 LSQHMQSILESLTMQPQDKDVLKDIFTRYN 276
>gi|426411224|ref|YP_007031323.1| exonuclease I [Pseudomonas sp. UW4]
gi|426269441|gb|AFY21518.1| exonuclease I [Pseudomonas sp. UW4]
Length = 476
Score = 342 bits (878), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 171/457 (37%), Positives = 263/457 (57%), Gaps = 18/457 (3%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ WYDYET G+N R DRP Q A +RTD LN ID P+ LYC+P+ D LP P AC IT
Sbjct: 2 TSIFWYDYETTGINPRCDRPLQMAGLRTDFDLNEIDEPVNLYCQPSDDILPHPAACAITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPGQLQAQGLSEADFMTRVHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+V++A Y L P G+ WP + G+ + KLE L+ N + H AH+ALSDVR
Sbjct: 122 QGGNSRWDLIDVVRAAYALRPDGLQWPTDDEGRVTLKLERLTAANGIDHGNAHEALSDVR 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARLIR P+L+ ++ LR K+ V+ +I + +P +++ FS+ SY+ ++ P
Sbjct: 182 ATIALARLIREKQPKLYAWLFQLRSKQKVMDQIR--LLQPLVHVSGRFSAARSYVGVVLP 239
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP NKN LI +L DP+ L D +R L + + E +P+ +IH+N+ P
Sbjct: 240 LAWHPRNKNALIVCDLHLDPQGLLDLDAESLRQRLYTRHDELAEGELPVPLKLIHINKCP 299
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLD-----YKINNSDL 662
V++ L VL + R D+ + + LN+T +K++LD Y +
Sbjct: 300 -VVAPLSVLRQDDQQRLGLDMALYQQRVL----QLNDT---RKVWLDKVLAIYAREDFSQ 351
Query: 663 ELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
+ +++LY+ FI +D +R++ P +L+ + F++++L EL+F YRARNF +TL
Sbjct: 352 SQDPEQQLYDGFIGDRDRRLCEQVRTVDPMQLAQEQWPFDDERLPELLFRYRARNFPDTL 411
Query: 723 SYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLL 759
+ +E +RW+ + R + N ++E + L
Sbjct: 412 NAEEQERWRIFCQKRLSDPGWGAPNTLESFVEAAAQL 448
>gi|386313348|ref|YP_006009513.1| Exodeoxyribonuclease I [Shewanella putrefaciens 200]
gi|319425973|gb|ADV54047.1| Exodeoxyribonuclease I [Shewanella putrefaciens 200]
Length = 470
Score = 342 bits (878), Expect = 8e-91, Method: Composition-based stats.
Identities = 181/471 (38%), Positives = 276/471 (58%), Gaps = 18/471 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+ W+DYETFG N RDRP QFA IRTD+ LN I P YCK A D+LP P A LIT I
Sbjct: 8 SIFWHDYETFGANPARDRPAQFAGIRTDLDLNIIGEPETFYCKQATDYLPSPEAILITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ GIPE +F I+ +F +P T GYN++ FDDE+TR+ F+RN I+PY REW+
Sbjct: 68 TPQLANLKGIPETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD+I++++A Y P GI W K++G PSFKLEHL+ N LSH+KAHDA+SDV A
Sbjct: 128 NGNSRWDIIDLVRACYAFRPDGINWSLKDDGSPSFKLEHLTQANGLSHEKAHDAMSDVYA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LIR P+L+++ LR+K+ V +I +P +++ S+++ +L+ P+
Sbjct: 188 TIAMAKLIREKQPKLYHYYFELRRKQAVSDQIDVLNMQPLAHVSSKISARNGCTTLISPV 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN +I NL D +I +I+ + + ED IP+ IHLN+ P
Sbjct: 248 AHHPTNKNAVICVNLAMDLSPLFDLNIEQIKTRMYTARAELAEDELPIPVKQIHLNKCPF 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
I++ K+L R D A + K + N+ + +K+ ++ + ++ D
Sbjct: 308 -ITSAKILDDAQASRLNIDKAFAREQYK---RLRNHPELREKLAQLFEHDGESTTVDPDL 363
Query: 669 ELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY+ F S D K+ I+R P+ L+ + F++ ++ E++F YRARN+ E L +E
Sbjct: 364 MLYSGGFFSSADKAKMEIIRHTLPQNLAALELQFDDVRMPEMLFRYRARNYPELLDDQES 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKA--NEHDTKILNALLMY 776
RW+++ +R ++ + L++E+LL+ +E+ K+L AL Y
Sbjct: 424 HRWREFCQNRLADQD--------YLLKLENLLQNTVDDENKQKLLAALCHY 466
>gi|398902735|ref|ZP_10651224.1| exonuclease I [Pseudomonas sp. GM50]
gi|398178085|gb|EJM65742.1| exonuclease I [Pseudomonas sp. GM50]
Length = 476
Score = 342 bits (878), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 172/466 (36%), Positives = 269/466 (57%), Gaps = 11/466 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ WYDYET G+N R DRP Q A IRTD LN ID P+ LYC+P+ D LP P AC IT
Sbjct: 2 TSIFWYDYETTGINPRCDRPLQVAGIRTDFDLNEIDEPVNLYCQPSDDILPHPAACAITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPGRLAELGLSEADFMTRVHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+V++A Y L P G+ WP + G+ + KLE L+ N + H AH+ALSDVR
Sbjct: 122 QGGNSRWDLIDVVRAAYALRPDGLVWPKDDEGRVTLKLERLTAANGIDHGHAHEALSDVR 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARLIR P+L++++ LR K+ V+ +I + +P +I+ FS+ Y+ ++ P
Sbjct: 182 ATIALARLIREKQPKLYDWLFQLRSKQKVMDQIR--LLQPMVHISGRFSAARHYVGVVLP 239
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP N+N LI +L DP+ L D +R L +++ E +P+ +IH+N+ P
Sbjct: 240 LAWHPRNRNALIVCDLHLDPQGLLDLDAETLRQRLYTRRDDLAEGELPVPLKLIHINKCP 299
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLD-YKINNSDLELNI 666
V++ L VL + + + L+ A + A + + +W+ D Y ++ +
Sbjct: 300 -VVAPLSVLRP--LDQQRLGLDMALYQER-ALRLSDAQQVWRDKVSDIYARDDFSPSQDP 355
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+++LY+ FI +D +R+ P +L+ + F++++L EL+F YRARNF +TLS +E
Sbjct: 356 EQQLYDGFIGDRDRRLCEQVRAADPAQLAQEQWPFDDERLPELLFRYRARNFPDTLSLEE 415
Query: 727 LKRWKKYRISRFYNKKNNLYNINMFYLEIES-LLKKANEHDTKILN 771
+RW+ + R + N +LE+ + L+ A ++L+
Sbjct: 416 QERWRIFCQKRLCAPEWGAPNTLDSFLEVAAQLMTSATSFQREVLD 461
>gi|127512540|ref|YP_001093737.1| exonuclease I [Shewanella loihica PV-4]
gi|126637835|gb|ABO23478.1| Exodeoxyribonuclease I subunit C [Shewanella loihica PV-4]
Length = 482
Score = 342 bits (878), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 183/475 (38%), Positives = 275/475 (57%), Gaps = 18/475 (3%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
N + W+DYETFG N +DRP QFA IRTD+ LN I P+ YCK A D+LP P A L
Sbjct: 16 NNLPSIFWHDYETFGANPAKDRPSQFAGIRTDMDLNIISEPVTFYCKQASDYLPSPEAIL 75
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
IT ITPQ G+PE +F + I F +P T GYN++ FDDE+TR+ F+RN +PY
Sbjct: 76 ITGITPQLANLKGMPEAEFMARINSEFSQPNTCVAGYNSLRFDDEVTRYGFYRNFFDPYA 135
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
REW+N SRWD+I++++A Y L P GI WP K +G PSFKLEHL+ NNLSH KAHDA+S
Sbjct: 136 REWQNGNSRWDIIDLVRACYALRPEGINWPEKEDGSPSFKLEHLTQANNLSHDKAHDAMS 195
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ +A+LI+ P+LF++ +LRKK V +I +P +++ S+ H +L
Sbjct: 196 DVYATIAMAKLIKERQPKLFDYYFNLRKKNEVSKQIDVLNMQPLIHVSSKISALHGCTTL 255
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED-IPISM--IHLN 604
+ P+ H NKN +I NL D + ++IR+ + + D +PI + +H+N
Sbjct: 256 IAPVAHHSTNKNAIICVNLAMDVTPLIELSADEIRERMYTPRVDLASDELPIGLKQLHIN 315
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL 664
+ P I+ K L+ R + D A K + + I +K+ + + +
Sbjct: 316 KCPF-IATAKTLTDGNAQRLEIDKEFARAQYK---RLRQHPEIREKLVAVFDTEHGNEIS 371
Query: 665 NIDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
+ D +LY+ F S D K+ I+R +P+ L+ + F++++L E++F YRARN+ ETL
Sbjct: 372 DPDLQLYSGGFFSHADKSKMEIIRHTAPQHLAALELDFDDERLPEMLFRYRARNYPETLD 431
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLL--KKANEHDTKILNALLMY 776
E +RW+ + SR N + +++E+L+ +A+E K+L AL Y
Sbjct: 432 DTEQQRWRTFCQSRL--------NDPDYMIKLETLVNDTEADEEKQKLLTALCHY 478
>gi|386019750|ref|YP_005937774.1| exonuclease I [Pseudomonas stutzeri DSM 4166]
gi|327479722|gb|AEA83032.1| exonuclease I [Pseudomonas stutzeri DSM 4166]
Length = 477
Score = 342 bits (878), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 168/479 (35%), Positives = 270/479 (56%), Gaps = 18/479 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+ WYD+ET G++ RDRP Q A IRT+ L I P+ +YC+P D LP P ACL+T I
Sbjct: 4 SIFWYDFETTGISPSRDRPLQVAGIRTNEALEEIGEPLNIYCRPGDDILPHPAACLVTGI 63
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TP G+ E +F + + PGT GYN++ FDDE+TR+ +RN +PY REW+
Sbjct: 64 TPAVLQQKGMCEAQFVHHLHRELSTPGTCGAGYNSLRFDDEVTRYSLYRNFYDPYAREWQ 123
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
SRWDLI++++ Y L P GI WP +++G+ + KLE LS N L H AHDALSDVRA
Sbjct: 124 GGNSRWDLIDLVRTAYALRPEGIGWP-EDDGRVTLKLERLSAANGLEHLNAHDALSDVRA 182
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+GLARLIR PRL+ ++ +LR+K VL ++ + P +++ FS+ ++S++ P+
Sbjct: 183 TIGLARLIRERQPRLYEYLFNLRRKHAVLEQVT--LLEPLVHVSGRFSAARHFLSVVLPL 240
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N LI +L + + L +R L +++ E +P+ ++H+N+ P
Sbjct: 241 AWHPRNRNALIVCDLQAEARPLWLESAETLRQRLYTRRDELAEGELPVPLKLVHINKCP- 299
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK----KIFLDYKINNSDLEL 664
V++ LKVL + R + DL + A ++ ++W +++ + D
Sbjct: 300 VLAPLKVLREADIQRLELDLPACHER---ADALREQRHVWSPKLDEVYREEGFIGVD--- 353
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
+ +++LY+ F+ ++D +R M+P +L+ F++ +LEEL+F YRARNF E LS
Sbjct: 354 DPEQQLYDGFLGERDRRLCDRIREMAPAELARQQCHFDDVRLEELLFRYRARNFPEALSA 413
Query: 725 KELKRWKKYRISRFYNKKNNLYN-INMFYLEIESLLKKANEHDTKILNALLMYGKIDGS 782
+E RW+++ R + N + F +I+ + A ++L YG+ G
Sbjct: 414 EERVRWQRFCQQRLSGEIAGAPNTLAQFEADIQQFMLTATPAQQQLLQQWREYGRALGE 472
>gi|374703634|ref|ZP_09710504.1| exonuclease I [Pseudomonas sp. S9]
Length = 477
Score = 342 bits (877), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 167/431 (38%), Positives = 258/431 (59%), Gaps = 17/431 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ WYDYET G++ RRDRP Q A IRTD LN I P+ +YCKP+ D LP P AC+IT
Sbjct: 2 TSSIFWYDYETTGIDPRRDRPLQVAGIRTDEQLNEIGEPLNIYCKPSDDILPHPAACMIT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G+ E +F + + +PGT GYN+I FDDE+TR+ +RN +PY RE
Sbjct: 62 GITPQVLAERGLDEAQFMAQVHAQLSQPGTCGAGYNSIRFDDEVTRYSLYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI++++ Y L P GI WP + G+ S KLE L+ N + H +AHDALSDV
Sbjct: 122 WQGGNSRWDLIDLVRTAYALRPEGIVWP-ELEGRVSLKLELLTAANGIEHGQAHDALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARL+R+ P+L++++ LR K VL ++ + +P +++ F+ + Y+S++
Sbjct: 181 RATIALARLLRDKQPKLYSYLYELRSKSRVLDQVK--LLQPMVHVSGRFAGDNHYLSVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L DP L + +R+ L + ++ E +P+ ++H+NR
Sbjct: 239 PLAWHPRNRNALIVCDLQRDPSVLLDETADSLRERLYTRHDALGEGQLPVPLKLLHINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK----KIFLDYKINNSDL 662
P V++ L VL + R + DL+ K A ++ W+ +I+ D SD
Sbjct: 299 P-VVAPLSVLRDADIQRLQLDLS---KLQGRADQLIAAQSQWQAKMPEIYRDEAFAGSD- 353
Query: 663 ELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
+ +++LY+ FI +D +RS P++L+ ++ F++ +L EL+F YRARN +L
Sbjct: 354 --DPEQQLYDGFIGNRDRNLCERVRSCEPEQLATESWPFDDGRLPELLFRYRARNLPSSL 411
Query: 723 SYKELKRWKKY 733
S +E RW+ +
Sbjct: 412 SAEEQVRWQVF 422
>gi|237798642|ref|ZP_04587103.1| exonuclease I [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331021495|gb|EGI01552.1| exonuclease I [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 476
Score = 342 bits (877), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 169/443 (38%), Positives = 263/443 (59%), Gaps = 13/443 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ WYDYET G+N R DR Q A IRTD LN I P+ LYC+P D LP P AC+IT
Sbjct: 2 TSSIFWYDYETTGINPRNDRALQMAGIRTDAELNEIAPPVNLYCQPGDDILPHPAACVIT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITP G+ E F + + PGT GYNT+ FDDE+TR+ F+RN +PY RE
Sbjct: 62 GITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI+V++A Y L P GI WP + +G+ + KLE L+ N + H +AHDALSDV
Sbjct: 122 WQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR P+L++++ +LR K+ V ++ + +P +I+ FS+ +Y+ ++
Sbjct: 181 RATIALARLIREKQPKLYDYLFALRTKQKVQDQVR--LLQPLVHISGRFSAARNYLGVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L D L D ++ +L + ++ +E +P+ ++H+NR
Sbjct: 239 PLAWHPHNRNALIVCDLHLDHSPLLQYDAETLKQHLYTRHDALEEGQLPVPLKLLHINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTY-IWK-KIFLDYKINNSDLEL 664
P V++ L VL S R + DL + ++ LN++ +W+ K+ + Y ++
Sbjct: 299 P-VVAPLGVLRSEDQQRLQLDLTA----YQARAAQLNDSREVWQDKLQVLYGKDDFVASE 353
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
+ +++LY+ FI +D +R P++L+ + F++ +L EL+F YRARNF +TLS
Sbjct: 354 DPEQQLYDGFIGDRDRRLCEQVRQAEPEQLARDGWPFDDARLPELLFRYRARNFPDTLST 413
Query: 725 KELKRWKKYRISRFYNKKNNLYN 747
+E +RW + R + ++ N
Sbjct: 414 EEQQRWLAFCQQRLRSPESGAPN 436
>gi|336311176|ref|ZP_08566143.1| exodeoxyribonuclease I [Shewanella sp. HN-41]
gi|335865392|gb|EGM70418.1| exodeoxyribonuclease I [Shewanella sp. HN-41]
Length = 470
Score = 342 bits (876), Expect = 1e-90, Method: Composition-based stats.
Identities = 178/471 (37%), Positives = 274/471 (58%), Gaps = 18/471 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+ W+DYETFG + +DRP QFA IRTD+ LN I P YCK A D+LP P A LIT I
Sbjct: 8 SIFWHDYETFGTHPAKDRPAQFAGIRTDLELNIISEPETFYCKQASDYLPSPEAILITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ GI E +F I+ +F +P T GYN++ FDDE+TR+ F+RN I+PY REW+
Sbjct: 68 TPQLANLRGIAETEFMGRIQALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD+I++++A Y P GI WP K +G PSFKLEHL+ N LSH+KAHDA+SDV A
Sbjct: 128 NGNSRWDIIDLVRACYAFRPDGINWPLKEDGSPSFKLEHLTQANGLSHEKAHDAMSDVYA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+L+ + LR+K+ V +I +P +++ S+ + +L+ P+
Sbjct: 188 TIAMAKLIKEKQPKLYQYYFDLRRKQAVADQIDVLNMQPLAHVSSKISALNGCTTLIAPV 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN +I NL D D+ +I+ + + ED IP+ IHLN+ P
Sbjct: 248 AHHPSNKNAVICVNLAMDLTPLFELDVEQIKTRMYTARADLAEDELPIPVKQIHLNKCPF 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
I++ K+L R D A + K + ++ + +K+ ++++ + D
Sbjct: 308 -ITSAKILDDVQAARLNIDKAFAREQYK---RLKSHPELREKLAQLFELDGESSTTDPDL 363
Query: 669 ELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY+ F S D K+ I+R P+ L+ + F++ ++ E++F YRARN+ E L Y+E
Sbjct: 364 MLYSGGFFSPADKAKMEIIRHTLPQNLAALELQFDDARIPEMLFRYRARNYPELLDYQES 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLK--KANEHDTKILNALLMY 776
+RW+++ R ++ + L++E+LL+ + +E K+L AL Y
Sbjct: 424 QRWREFCQGRLADQD--------YLLKLENLLQDTETDEIKQKLLTALCHY 466
>gi|192360953|ref|YP_001983097.1| exonuclease I [Cellvibrio japonicus Ueda107]
gi|190687118|gb|ACE84796.1| exodeoxyribonuclease I [Cellvibrio japonicus Ueda107]
Length = 497
Score = 342 bits (876), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 167/432 (38%), Positives = 248/432 (57%), Gaps = 6/432 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
T W+DYET+G + DRP QFA +RTD+ LN + P+ +Y +PAPD LP P ACLIT I
Sbjct: 8 TLYWHDYETWGESPAIDRPVQFAGVRTDLDLNILGEPLTIYARPAPDVLPKPEACLITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+ E F + I + +PGT VGYN+I FDDE+TR+ +RN +PYEREW+
Sbjct: 68 TPQEAEAKGVSEADFIAAIHRELARPGTCGVGYNSIRFDDEVTRYTLYRNFYDPYEREWR 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDLI+V++ L P GI WP +G P FKLE L+ VN +SH+ AHDALSDV A
Sbjct: 128 NGNSRWDLIDVLRMTRALRPEGIHWPDYEDGTPCFKLERLTEVNRISHEAAHDALSDVHA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +ARL+++ P+L+++ LR K++ + I +P +I+ F + +L+ P+
Sbjct: 188 TIAMARLLKSRQPKLYDYAFRLRDKRFAASLIDIDGQKPLLHISSRFPGQQGNAALVLPL 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLNRSPI 608
HP NKN +I +NL DP L ++++R L E + P+ IHLN++P+
Sbjct: 248 AYHPANKNSVIAFNLAFDPSPLLNLPVDELRIRLFTASADLPEGVERLPLKEIHLNKTPM 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
+++ V L R + D+ ++++ + + LD + D D
Sbjct: 308 LVTTAMV-DETLARRLQLDMAICEQHLRAWTQLTRTEREALAEKLDELYSAQDFTGRTDP 366
Query: 669 E--LYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
E LY F S D ++ +R++SP L+ + FE+ +L EL+F YRARNF E+L E
Sbjct: 367 EQQLYAGFFSDADKRLMSRVRTLSPDALAKTEWTFEDSRLPELLFRYRARNFPESLDPAE 426
Query: 727 LKRWKKYRISRF 738
+RW + R
Sbjct: 427 QQRWFDFCCGRL 438
>gi|378952541|ref|YP_005210029.1| Exodeoxyribonuclease I [Pseudomonas fluorescens F113]
gi|359762555|gb|AEV64634.1| Exodeoxyribonuclease I [Pseudomonas fluorescens F113]
Length = 478
Score = 342 bits (876), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 169/436 (38%), Positives = 259/436 (59%), Gaps = 11/436 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ WYDYET G+N R DRP Q A IRTD LN ID P+ LYC+P+ D LP P AC IT
Sbjct: 2 TSIFWYDYETTGINPRCDRPLQVAGIRTDFELNEIDEPVNLYCRPSDDILPHPAACAITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPVCLAEKGLSEADFMTRVHGHLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI++++A Y L P GI WP + +G+ + KLE L+ N + H +AHDALSDVR
Sbjct: 122 QGGNSRWDLIDLVRAAYALRPQGIVWP-QEDGRVTLKLERLTAANGIDHGQAHDALSDVR 180
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARLIR PRL++++ LR K+ V+ +I + +P +I+ FS+ +YI ++ P
Sbjct: 181 ATIALARLIRQQQPRLYDWLFQLRSKQKVMDQIR--LLQPMVHISGRFSAARNYIGVVLP 238
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP N+N LI +L DP+ L +D +R L ++ E +P+ +IH+N+ P
Sbjct: 239 LAWHPKNRNALIVCDLHLDPQGLLDDDAESLRQRLYTRREELLEGELPVPLKLIHINKCP 298
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELNI 666
VI+ L VL + + R + D+ F+ + A + + +W+ K+ Y + +
Sbjct: 299 -VIAPLSVLRAEDLQRLELDME-GFQ--QRALRLTDAQKVWQDKLQAIYGREDFTASEDP 354
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+++LY F+ +D +R P +L+ + F++++L EL+F YRARNF +TL+ +E
Sbjct: 355 EQQLYAGFLGDRDRRLCEQVRLADPAQLAQERWPFDDERLPELLFRYRARNFPDTLNPEE 414
Query: 727 LKRWKKYRISRFYNKK 742
RW+ + R + +
Sbjct: 415 QARWRLFCQQRLSSPE 430
>gi|339493141|ref|YP_004713434.1| exonuclease I [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
gi|338800513|gb|AEJ04345.1| exonuclease I [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
Length = 477
Score = 341 bits (875), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 168/479 (35%), Positives = 270/479 (56%), Gaps = 18/479 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+ WYD+ET G++ RDRP Q A IRT+ L I P+ +YC+P D LP P ACL+T I
Sbjct: 4 SIFWYDFETTGISPSRDRPLQVAGIRTNEALEEIGEPLNIYCRPGDDILPHPAACLVTGI 63
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TP G+ E +F + + PGT GYN++ FDDE+TR+ +RN +PY REW+
Sbjct: 64 TPAVLQQKGMCEAQFVHHLHRELSTPGTCGAGYNSLRFDDEVTRYSLYRNFYDPYAREWQ 123
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
SRWDLI++++ Y L P GI WP +++G+ + KLE LS N L H AHDALSDVRA
Sbjct: 124 GGNSRWDLIDLVRTAYALRPEGIGWP-EDDGRVTLKLERLSAANGLEHLNAHDALSDVRA 182
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+GLARLIR PRL+ ++ +LR+K VL ++ + P +++ FS+ ++S++ P+
Sbjct: 183 TIGLARLIRERQPRLYEYLFNLRRKHAVLEQVT--LLEPLVHVSGRFSAARHFLSVVLPL 240
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N LI +L + + L +R L +++ E +P+ ++H+N+ P
Sbjct: 241 AWHPRNRNALIVCDLQAEVRPLWLESAETLRQRLYTRRDELAEGELPVPLKLVHINKCP- 299
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK----KIFLDYKINNSDLEL 664
V++ LKVL + R + DL + A ++ ++W +++ + D
Sbjct: 300 VLAPLKVLREADIQRLELDLPACHER---ADALREQRHVWSPKLDEVYREEGFIGVD--- 353
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
+ +++LY+ F+ ++D +R M+P +L+ F++ +LEEL+F YRARNF E LS
Sbjct: 354 DPEQQLYDGFLGERDRRLCDRIREMAPAELARQQCHFDDVRLEELLFRYRARNFPEALSA 413
Query: 725 KELKRWKKYRISRFYNKKNNLYN-INMFYLEIESLLKKANEHDTKILNALLMYGKIDGS 782
+E RW+++ R + N + F +I+ + A ++L YG+ G
Sbjct: 414 EERVRWQRFCQQRLSGEIAGAPNTLAQFEADIQQFMLTATPAQQQLLQQWREYGRALGE 472
>gi|421504980|ref|ZP_15951920.1| exonuclease I [Pseudomonas mendocina DLHK]
gi|400344203|gb|EJO92573.1| exonuclease I [Pseudomonas mendocina DLHK]
Length = 481
Score = 341 bits (874), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 166/428 (38%), Positives = 252/428 (58%), Gaps = 11/428 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ WYDYET G+N R DRP Q A IRTD LN I P+ +YC+P+ D LP P ACL+T
Sbjct: 2 TSSIFWYDYETTGINPRCDRPLQVAGIRTDEALNEIGEPLNIYCRPSDDILPHPAACLVT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
I PQ G+ E +F + + PGT GYN++ FDDE+TR+ +RN +PY RE
Sbjct: 62 GIDPQRLQQLGLDEGEFVTRVHAELSAPGTCGAGYNSLRFDDEVTRYSLYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI++++ Y L P GI WP + G+ S KLE L+ N + H +AHDALSDV
Sbjct: 122 WQGGNSRWDLIDLVRTAYALRPEGIEWP-QEEGRVSLKLERLTQANGIDHGQAHDALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+GLARL+R PRL++F+ LR K+ V+ +I + +P +++ FS+ Y++ +
Sbjct: 181 RATIGLARLLRERQPRLYDFLYQLRSKQRVMDQIR--LLQPLLHVSGRFSAARHYLAPVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE---DIPISMIHLNRS 606
P+ HP N+N LI +L DP L D + +R L ++ E +P+ ++H+NR
Sbjct: 239 PLAWHPRNRNALIVCDLQADPAPLLELDADTLRARLYTRREDLAEHEAPVPLKLLHINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELN 665
P V++ L VL R + D + +N A + +W+ K+ Y+ +
Sbjct: 299 P-VVAPLSVLRDADRQRLQLDWSVCERN---AERLKAAQTLWQDKLSAIYREEAFAASAD 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY FI +D +R+ P+ L++ N+ F++ +L EL+F YRARNF ++LS
Sbjct: 355 PEQQLYEGFIGDRDRRLCEQVRNAQPQALASQNWPFDDARLPELLFRYRARNFPDSLSPT 414
Query: 726 ELKRWKKY 733
E +RW ++
Sbjct: 415 EQQRWMEF 422
>gi|422644331|ref|ZP_16707469.1| exonuclease I [Pseudomonas syringae pv. maculicola str. ES4326]
gi|330957883|gb|EGH58143.1| exonuclease I [Pseudomonas syringae pv. maculicola str. ES4326]
Length = 476
Score = 341 bits (874), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 170/438 (38%), Positives = 257/438 (58%), Gaps = 13/438 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ WYDYET G+N R DR Q A IRTD LN I P+ LYC+P+ D LP P ACLIT
Sbjct: 2 TSSIFWYDYETTGINPRNDRALQMAGIRTDADLNEIAPPVNLYCQPSDDILPHPAACLIT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITP G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY RE
Sbjct: 62 GITPTLLAEKGLSEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI+V++A Y L P GI WP + +G+ + KLE L+ N + H +AHDALSDV
Sbjct: 122 WQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR PRL++++ +LR K+ V +I + +P +I+ FS+ +Y+ ++
Sbjct: 181 RATIALARLIREKQPRLYDYLFALRSKQKVQDQIR--LMQPLVHISGRFSAARNYLGVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L D L D + ++ L + + E +P+ ++H+NR
Sbjct: 239 PLAWHPHNRNALIVCDLHLDHSPLLDQDASTLKQRLYTRHEALSEGELPVPLKLLHINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTY-IWK-KIFLDYKINNSDLEL 664
P VI+ + VL S R + D+ + ++ LN + +W+ K+ Y +
Sbjct: 299 P-VIAPMGVLRSEDQERLQLDM----AGYESRAAALNESREVWQDKVLALYGKEDFTASE 353
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
+ +++LY+ FI+ +D +R P++L+ + F++ +L EL+F YRARNF TLS
Sbjct: 354 DPEQQLYDGFIADRDRRLCEQVRLADPERLAGDAWPFDDTRLPELLFRYRARNFPHTLSR 413
Query: 725 KELKRWKKYRISRFYNKK 742
+E +RW+ + R N +
Sbjct: 414 EEQQRWQHFCQERLRNPE 431
>gi|161501966|ref|YP_261869.2| exonuclease I [Pseudomonas protegens Pf-5]
gi|341580333|gb|AAY94018.2| exodeoxyribonuclease I [Pseudomonas protegens Pf-5]
Length = 475
Score = 341 bits (874), Expect = 2e-90, Method: Composition-based stats.
Identities = 170/424 (40%), Positives = 253/424 (59%), Gaps = 11/424 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ WYDYET G+N R DRP Q A IRTD+ LN ID P+ LYC+P+ D LP P AC+IT
Sbjct: 2 TSLFWYDYETTGINPRCDRPLQVAGIRTDLALNEIDEPVNLYCQPSDDILPHPMACMITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP G+ E F + + + +PGT VGYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPGRLAEQGLGEADFMTRVHEQLARPGTCGVGYNTLRFDDEMTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+V++ Y L P GI WP + G+ S KLE L+ N + H +AHDALSDVR
Sbjct: 122 QGGNSRWDLIDVVRTAYALRPQGIVWP-EEQGQVSLKLERLTAANGIDHGQAHDALSDVR 180
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARL+R+ PRL++++ LR K+ V+ ++ + +P +I+ FS+ YI ++ P
Sbjct: 181 ATIALARLVRDKQPRLYDWLFQLRSKQRVMDQV--RLLQPMVHISGRFSAARHYIGVVLP 238
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP N+N LI +L DP+ L D +R L ++ E +P+ +IH+NR P
Sbjct: 239 LAWHPRNRNALIVCDLHLDPQGLLELDAETLRQRLYTRREDLLEGELPVPLKLIHINRCP 298
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELNI 666
V++ L VL S R D+ + A ++ +W+ K+ + Y + +
Sbjct: 299 -VVAPLSVLRSEDQQRLHLDMELYQRR---AVALSEAQEVWRDKLSVIYGPDEFAASDDP 354
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+++LY+ FI +D +R P L+ + F++++L EL+F YRARNF ETL+ E
Sbjct: 355 EQQLYDGFIGDRDRRLCEQVREADPLHLAQQQWPFDDERLPELLFRYRARNFPETLNKAE 414
Query: 727 LKRW 730
+RW
Sbjct: 415 QERW 418
>gi|421784562|ref|ZP_16221001.1| exodeoxyribonuclease I [Serratia plymuthica A30]
gi|407753404|gb|EKF63548.1| exodeoxyribonuclease I [Serratia plymuthica A30]
Length = 476
Score = 341 bits (874), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 175/479 (36%), Positives = 272/479 (56%), Gaps = 23/479 (4%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+TF +DYETFG + DRP QFA +RTD+ N ID P+++YCKPA D+LPDP A +IT
Sbjct: 7 QNTFYIHDYETFGKSPSMDRPAQFAGVRTDMDFNIIDEPLVIYCKPADDYLPDPEAVMIT 66
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ L GI E FA I + F PGT +GYN I FDDE++R +F+R+ +PY
Sbjct: 67 GITPQLALAKGINEADFAREIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRSFHDPYAYS 126
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+N SRWDL++V++A Y L P GI WP +G PSF+LEHL+ N + H+ AHDA+SDV
Sbjct: 127 WQNGNSRWDLLDVMRACYALRPEGIVWPENEDGFPSFRLEHLTRANGVEHEHAHDAMSDV 186
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+L++ PRLF+F+L R K + A I P +++ MF + S +
Sbjct: 187 YATIAMAKLVKQAQPRLFDFLLQHRNKHKLNALIDIAEMTPLVHVSGMFGAARGNTSWVS 246
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP NKN +I +L D L +++R+ L ++ D +PI ++H+N+
Sbjct: 247 PLAWHPDNKNAVIMCDLAGDMTPLLTLSADELRERLYTRREDLAADQSPVPIKLVHINKC 306
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL-- 664
P++ +L N R D +N++ + N + +K+ + +D E
Sbjct: 307 PVLAPAKTLLPENAE-RLGIDRQACLQNLQL---LRQNPQVREKVVALF----ADAEPFK 358
Query: 665 ---NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
++D LY+ F S D + I++ P+ L ++ F + +++EL+F +RARN+ T
Sbjct: 359 AVDDVDARLYDGFFSDADKAAMRIIQQTKPQNLPALDLTFSDGRMKELLFRFRARNYPNT 418
Query: 722 LSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESL--LKKANEHDTKILNALLMYGK 778
L E +RW ++R ++ + + L++ESL L + ++ T +L AL YGK
Sbjct: 419 LDDAEQRRWLQHRQEALSAER-----VQSYVLQLESLYNLHEGDKEKTALLKALFEYGK 472
>gi|402698952|ref|ZP_10846931.1| exonuclease I [Pseudomonas fragi A22]
Length = 481
Score = 341 bits (874), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 172/473 (36%), Positives = 272/473 (57%), Gaps = 12/473 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ WYDYET G+N R DR Q A IRTD+ LN ID P+ LYC+P+ D LP P ACLIT
Sbjct: 2 TSIFWYDYETTGINPRCDRAVQVAGIRTDVDLNEIDQPLNLYCQPSDDILPHPMACLITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP + G+ E +F + PGT GYN++ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPGRLEDKGLGEAEFMTRTHAQLALPGTCGAGYNSLRFDDEVTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+V++ Y L P GI WP ++ G+ + KLE L+ N + H +AHDALSDVR
Sbjct: 122 QGGNSRWDLIDVVRTAYALRPEGIVWP-EDEGRVTLKLERLTAANGIDHGQAHDALSDVR 180
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARLIR+ P+L+ ++ LR K+ VL ++ + +P +I+ FS+ Y ++ P
Sbjct: 181 ATIALARLIRDKQPKLYEWLFKLRTKQRVLDQVR--LLQPMLHISGRFSAARHYAGVVLP 238
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP N+N LI ++L DP+ L D +R L ++ E + + +IH+NR P
Sbjct: 239 LAWHPKNRNALIVYDLHFDPQPLLDMDAESLRQMLYTRREDLAEGQQPVALKLIHVNRCP 298
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELNI 666
V++ L V+ + R + D+ A + A++++ +W+ K+ Y + +
Sbjct: 299 -VVAPLNVVRAQDQQRLQLDM--ALYQAR-AATLIEAQQVWQDKLSAIYASEDFVPAADP 354
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+++LY+ F+ ++D +R P++L+ + F++++L EL+F YRARNF TLS +E
Sbjct: 355 EQQLYDGFLGERDRRLCEQVRLSDPEQLAGTTWPFDDERLPELLFRYRARNFPHTLSAEE 414
Query: 727 LKRWKKYRISRFYNKKNNL-YNINMFYLEIESLLKKANEHDTKILNALLMYGK 778
L+RW+ + R + ++ F L + A K+L+ Y +
Sbjct: 415 LERWQLFCRQRLTDPAMGAPLTLDDFTRAALELSRSAKPAQLKLLSEWQRYAQ 467
>gi|431928271|ref|YP_007241305.1| exonuclease I [Pseudomonas stutzeri RCH2]
gi|431826558|gb|AGA87675.1| exonuclease I [Pseudomonas stutzeri RCH2]
Length = 486
Score = 341 bits (874), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 170/475 (35%), Positives = 271/475 (57%), Gaps = 20/475 (4%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+ WYD+ET G++ RDRP Q A IRT+ L I P+ +YC+P+ D LP P ACL+T I
Sbjct: 12 SIFWYDFETTGISPSRDRPLQVAGIRTNEALEEIGEPLNIYCRPSDDILPHPAACLVTGI 71
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TP G+ E +F + + PGT GYN++ FDDE+TR+ +RN +PY REW+
Sbjct: 72 TPAILQQKGLCEAEFIQRLHQQLSAPGTCGAGYNSLRFDDEVTRYSLYRNFYDPYAREWQ 131
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
SRWDLI++++ Y L P GI WP + +G+ + KLE LS N L H AHDALSDVRA
Sbjct: 132 GGNSRWDLIDLVRTAYALRPEGIVWP-EEDGRVTLKLERLSVANGLEHLNAHDALSDVRA 190
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+GLARLIR+ PRL++++ +LR+K+ VL +I + P +++ FS+ ++S++ P+
Sbjct: 191 TIGLARLIRDRQPRLYDYLYNLRRKQAVLEQIT--LLEPLVHVSGRFSAARHFLSVVLPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N LI +L +P+ L +R L +++ E +P+ ++H+N+ P
Sbjct: 249 GWHPRNRNALIVCDLQAEPQPLLQERAETLRQRLYTRRDQLAEGELPVPLKLVHVNKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLN-CAFKNIKCASSILNNTYIWK----KIFLDYKINNSDLE 663
V++ LKVL + R D+ C + A+++ +W +I+ + SD
Sbjct: 308 VLTPLKVLREADIQRLGLDMPLCQAR----AAALREQRQLWSHKLDEIYREEGFAGSD-- 361
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
+ +++LY+ F+ ++D +R ++P +L+ F++ +LEEL+F YRARNF E LS
Sbjct: 362 -DPEQQLYDGFLGERDRRLCDEIRGLAPAELARHPSRFDDVRLEELLFRYRARNFPEALS 420
Query: 724 YKELKRWKKYRISRFYNKKNNLYN-INMFYLEIESLLKKANEHDTKILNALLMYG 777
E +W+++ R + N + F IE + A ++L YG
Sbjct: 421 AAEQAQWRRFCQQRLSDDACGAPNTLAQFEAGIEQSMVTATPAQQQLLQQWRDYG 475
>gi|146308334|ref|YP_001188799.1| exonuclease I [Pseudomonas mendocina ymp]
gi|145576535|gb|ABP86067.1| Exodeoxyribonuclease I subunit C [Pseudomonas mendocina ymp]
Length = 481
Score = 341 bits (874), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 166/428 (38%), Positives = 253/428 (59%), Gaps = 11/428 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ WYDYET G+N R DRP Q A IRTD LN I P+ +YC+P+ D LP P ACL+T
Sbjct: 2 TSSIFWYDYETTGINPRCDRPLQVAGIRTDEALNEIGEPLNIYCRPSDDILPHPAACLVT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
I PQ G+ E +F + + PGT GYN++ FDDE+TR+ +RN +PY RE
Sbjct: 62 GIDPQRLQQLGLDEGEFVTRVHAELSAPGTCGAGYNSLRFDDEVTRYSLYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI++++ Y L P GI WP + G+ S KLE L+ N + H +AHDALSDV
Sbjct: 122 WQGGNSRWDLIDLVRTAYALRPEGIEWP-QEEGRVSLKLERLTQANGIDHGQAHDALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+GLARL+R PRL++F+ LR K+ V+ +I + +P +++ FS+ Y++ +
Sbjct: 181 RATIGLARLLRERQPRLYDFLYQLRSKQRVMDQIR--LLQPLLHVSGRFSAARHYLAPVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE---DIPISMIHLNRS 606
P+ HP N+N LI +L DP L D + +R L ++ E +P+ ++H+NR
Sbjct: 239 PLAWHPRNRNALIVCDLQADPAPLLELDADTLRARLYTRREDLAEHEAPVPLKLLHINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELN 665
P V++ L VL R + D + +N A + +W+ K+ Y+ +
Sbjct: 299 P-VVAPLSVLRDADRQRLQLDWSVCERN---AERLKAAQALWQDKLPTIYREEAFAASTD 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY+ FI +D +R+ P+ L++ N+ F++ +L EL+F YRARNF ++LS
Sbjct: 355 PEQQLYDGFIGDRDRRLCEQVRNAQPQALASQNWPFDDARLPELLFRYRARNFPDSLSPT 414
Query: 726 ELKRWKKY 733
E +RW ++
Sbjct: 415 EQQRWMEF 422
>gi|170720191|ref|YP_001747879.1| exonuclease I [Pseudomonas putida W619]
gi|169758194|gb|ACA71510.1| Exodeoxyribonuclease I [Pseudomonas putida W619]
Length = 478
Score = 340 bits (873), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 175/475 (36%), Positives = 265/475 (55%), Gaps = 14/475 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ W+DYET G+N R DRP Q A +RTD LN ID PI LYC+P+ D LP P ACL+T
Sbjct: 2 TSSIFWHDYETTGINPRCDRPLQVAGVRTDFELNEIDEPISLYCRPSDDILPHPAACLVT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ + G+ E +F + + PGT GYNT+ FDDE+TR+ +RN +PY RE
Sbjct: 62 GITPQQLASQGLGEAEFMTRVHAQLALPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI+V++ Y L P GI WP + +G+ S +LE LS N + H AH+ALSDV
Sbjct: 122 WQGGNSRWDLIDVVRTAYALRPEGIVWP-QQDGRTSLRLELLSKANGIDHGHAHEALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR+ P+L+ ++ LR K V+ +I + +P +I+ FS+ SY+ ++
Sbjct: 181 RATIALARLIRHKQPKLYEWLFQLRSKHKVMEQIR--LLQPLVHISGRFSAARSYLGVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L + L IR+ L ++ + IP+ ++ +NR
Sbjct: 239 PLAWHPRNRNALIVCDLQQETLPLLRESAEVIRERLYTRREELSDGQLPIPLKLVQINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNI 666
P V++ L VL + R DL A + N W+ L++ D +
Sbjct: 299 P-VVAPLSVLRAADQQRLGIDLALVQSR---AEELANQQNAWQHK-LEHIYGKEDFVPSE 353
Query: 667 DEE--LYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
D E LY F+ +D +R++ P +L ++ F++ ++ EL+F YRARNF ETL+
Sbjct: 354 DPEQQLYEGFLGDRDRRLCEQVRTLDPAQLGQGHWMFDDPRMPELLFRYRARNFPETLNS 413
Query: 725 KELKRWKKYRISRFYNKKNNLYN-INMFYLEIESLLKKANEHDTKILNALLMYGK 778
+E +RW + R + + N + F +S A+E ++L+A + +
Sbjct: 414 EERQRWYGFCQQRLSDPQWGAPNTLGDFEQARQSAWANADEAGRQVLDAWQAHAR 468
>gi|392422234|ref|YP_006458838.1| exonuclease I [Pseudomonas stutzeri CCUG 29243]
gi|390984422|gb|AFM34415.1| exonuclease I [Pseudomonas stutzeri CCUG 29243]
Length = 478
Score = 340 bits (873), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 169/477 (35%), Positives = 273/477 (57%), Gaps = 18/477 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
NS+ WYD+ET G++ RDRP Q A IRT+ L I P+ +YC+P+ D LP P ACL+T
Sbjct: 2 NSSIFWYDFETTGISPSRDRPLQVAGIRTNEALEEIGEPLNIYCRPSDDILPHPAACLVT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITP G+ E +F + + PGT GYN++ FDDE+TR+ +RN +PY RE
Sbjct: 62 GITPATLEQKGLCEAEFIHRLHQQLSLPGTCGAGYNSLRFDDEVTRYSLYRNFYDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI++++ Y L P G+ WP + G+ + KLE LS N L H AHDALSDV
Sbjct: 122 WQGGNSRWDLIDLVRTAYALRPEGLVWP-EEEGRVTLKLERLSVANGLEHLNAHDALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARL+R+ PRL++++ +LR+K+ VL +I + P +++ FS+ ++S++
Sbjct: 181 RATIALARLVRDRQPRLYDYLYNLRRKQAVLEQIR--LLEPMVHVSGRFSAARHFLSVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L P+ L +R L +++ + +P+ ++H+N+
Sbjct: 239 PLGWHPRNRNALIVCDLQAGPEPLLQETAETLRQRLYTRRDQLADGGLPVPLKLVHVNKC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIW----KKIFLDYKINNSDL 662
P V++ LKVL + + R D+ + A+ + IW + I+ + + +D
Sbjct: 299 P-VVAPLKVLRTQDIQRLGLDMPICHER---AAMLRGQRQIWSTKLEDIYREDRFAGTD- 353
Query: 663 ELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
+ +++LY+ F+ +D +RS+SP +L+ F F++ +L+EL+F YRARNF E L
Sbjct: 354 --DPEQQLYDGFLGDRDRRLCDQVRSLSPAELAKQPFRFDDARLDELLFRYRARNFPEAL 411
Query: 723 SYKELKRWKKYRISRFYNKKNNLYN-INMFYLEIESLLKKANEHDTKILNALLMYGK 778
S E +W+++ R + N + F +IE + A ++L YG+
Sbjct: 412 SVDEQAQWRQFCQQRLSDGACGAPNTLVQFESDIEQFMIGATPAQRQLLQQWREYGQ 468
>gi|24374325|ref|NP_718368.1| exodeoxyribonuclease I SbcB [Shewanella oneidensis MR-1]
gi|24348874|gb|AAN55812.1| exodeoxyribonuclease I SbcB [Shewanella oneidensis MR-1]
Length = 470
Score = 340 bits (873), Expect = 3e-90, Method: Composition-based stats.
Identities = 177/474 (37%), Positives = 271/474 (57%), Gaps = 24/474 (5%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+ W+DYETFG N +DRP QFA IRTD+ LN I P YCK + D+LP P A LIT I
Sbjct: 8 SIFWHDYETFGANPAKDRPAQFAGIRTDLDLNIISEPETFYCKQSTDYLPSPEAILITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+PE +F I +F + T GYN++ FDDE+TR+ F+RN I+PY REW+
Sbjct: 68 TPQLANLKGLPETEFMGRIHTLFSQANTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N +RWD+I++++A Y P GI WP K +G PSFKLEHL+ N LSH+KAHDA+SDV A
Sbjct: 128 NGNTRWDIIDLVRACYAFRPDGIHWPLKEDGSPSFKLEHLTQANGLSHEKAHDAMSDVYA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+L+ + LR+K+ V A+I +P +++ S+ H +L+ P+
Sbjct: 188 TIAMAKLIKEKQPKLYQYYFELRRKQAVSAQIDVLNMQPLAHVSSKISAMHGCTTLIAPV 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN +I NL D D+ +I+ + + +D IP+ +HLN+ P
Sbjct: 248 AHHPSNKNAIICVNLAMDLSPLFELDVEQIKTRMYTPRAELADDELPIPVKQVHLNKCPF 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCA---FKNIKCASSILNNTYIWKKIFLDYKINNSDLELN 665
I++ K+L R D A +K +K + +K+ ++ + +
Sbjct: 308 -ITSAKILDDAQAERLSIDKAFARGQYKRLKAHPELR------EKLAQLFEHDGEATTTD 360
Query: 666 IDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
D LY+ F S D K+ I+R P+ L+ ++ F++ ++ E++F YRARN+ E L
Sbjct: 361 PDLMLYSGGFFSPADKAKMEIIRHTLPQNLAALDLQFDDGRIPEMLFRYRARNYPELLDD 420
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLK--KANEHDTKILNALLMY 776
+E RW+ + R ++ + L++E+LL+ + +EH K+L AL Y
Sbjct: 421 QESHRWRTFCQQRLADQD--------YLLKLENLLQDTEGDEHKQKLLAALCHY 466
>gi|344344254|ref|ZP_08775118.1| Exodeoxyribonuclease I [Marichromatium purpuratum 984]
gi|343804211|gb|EGV22113.1| Exodeoxyribonuclease I [Marichromatium purpuratum 984]
Length = 477
Score = 340 bits (872), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 176/475 (37%), Positives = 266/475 (56%), Gaps = 12/475 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+ TFLW+DYET+G + RRDR QFAA+RT+ L I +P++LYC+PA D LP P ACLIT
Sbjct: 2 SRTFLWHDYETWGADPRRDRACQFAAVRTNAELEEIGDPLVLYCRPATDLLPHPDACLIT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G+ E +FA+ I PGT VGYN++ FDDE+TR + +RNL +PY RE
Sbjct: 62 GITPQLAAREGVCEAEFAAAIHAELATPGTCGVGYNSLRFDDEVTRHLLYRNLFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+N SRWDLI+ ++ + L P GI WP +G SF+LE LS N + H +AHDAL+DV
Sbjct: 122 WRNGNSRWDLIDTLRLAHALRPEGIAWPRHEDGSTSFRLEALSAANGIEHGQAHDALADV 181
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARL++ PRLF++ L+LR K+ A I +P + + + + I+ +
Sbjct: 182 RATIALARLLKRAQPRLFDYALTLRDKRQARALID--RGQPLLHASARYPAALGCIAPIA 239
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLNRS 606
+ HP N N ++ ++L H P L ++++R L + D+ P+ +HLNR+
Sbjct: 240 ALAPHPGNPNGVLCFDLRHHPALLLDTPVDELRARLFTPAAARGADVQRPPLKTVHLNRA 299
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNI 666
P V++ LK L + R++ D ++ + A+ + D E +
Sbjct: 300 P-VLAPLKTLGAEAAARWQIDPAAVEQHARFAAEHAAELAKRARALFD---TPPAAETDP 355
Query: 667 DEELY-NNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
D LY F+ +D L LR + P +L + FE+ +L E++F YRARN+ ETLS +
Sbjct: 356 DLMLYGGGFLGDRDRRLLDELRRLPPAQLVGLAPAFEDPRLPEMLFRYRARNWPETLSPE 415
Query: 726 ELKRWKKYRISRFYNKKNNL-YNINMFYLEIESLLKKA-NEHDTKILNALLMYGK 778
E +RW YR++R I+ F + L + + ++L AL + +
Sbjct: 416 ERERWDGYRLARLTEPDGGASLTIDDFEQRLAELDAEGLDPARARVLEALADWAE 470
>gi|307130832|ref|YP_003882848.1| exonuclease I [Dickeya dadantii 3937]
gi|306528361|gb|ADM98291.1| exonuclease I [Dickeya dadantii 3937]
Length = 476
Score = 340 bits (872), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 172/472 (36%), Positives = 268/472 (56%), Gaps = 13/472 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF +DYETFG + +DRP QFA +RTD+ N I P+++YC+P D+LPDP A +IT I
Sbjct: 9 TFFIHDYETFGKHPAKDRPAQFAGVRTDLNFNVIGEPVVIYCQPTDDYLPDPEAVMITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G E +FA I + F PGT +GYN I FDDE++R +F+RN +PY W+
Sbjct: 69 TPQVAQSRGTREAEFARHIHEAFSAPGTCIMGYNNIRFDDEVSRNLFYRNFYDPYAYSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI WP ++G PSF+LEHL+ N + H +AHDA+SDV A
Sbjct: 129 NGNSRWDLLDMLRACYALRPDGIVWPENDDGFPSFRLEHLTRANGVEHTQAHDAMSDVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +ARL++ + P+LF+++ +LR K V A I P +P +++ MF + S + P+
Sbjct: 189 TIAMARLLKQSQPKLFDYLYALRNKNKVSALIDIPQMKPLVHVSGMFGAARGNTSWIVPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L D + L D +++R L ++ ED +PI ++H+N+ P
Sbjct: 249 AWHPDNRNAVIVCDLAGDIQPLLELDADELRTRLYTRRALLAEDESPVPIKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
V++ L R D N++ + + K + L ++ ++D
Sbjct: 308 VLAPASTLRPEDAERLGIDRQRCLNNLQLLRQ--HGSVREKVVALFADAPPFEVSTDVDL 365
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
+LY+ F S D + I+R + L +N F ++++EEL+F YRARNF TL +E +
Sbjct: 366 QLYDGFFSDADRAAMDIIRKTDSQHLPALNLQFADRRVEELLFRYRARNFPGTLDEQEQQ 425
Query: 729 RWKKYRISRFYNKKNNLY--NINMFYLEIESLLKKANEHDTKILNALLMYGK 778
RW +R + F + Y +N Y + +E T +L AL Y +
Sbjct: 426 RWLAHRRAVFTTDRVQDYFDALNQLYQQ-----HDGDEKKTALLKALFAYAQ 472
>gi|271500784|ref|YP_003333809.1| exodeoxyribonuclease I [Dickeya dadantii Ech586]
gi|270344339|gb|ACZ77104.1| Exodeoxyribonuclease I [Dickeya dadantii Ech586]
Length = 476
Score = 340 bits (872), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 172/472 (36%), Positives = 270/472 (57%), Gaps = 13/472 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF +DYETFG + +DRP QFA +RTD+ I P+++YC+PA D+LPDP A +IT I
Sbjct: 9 TFFIHDYETFGKHPAKDRPAQFAGVRTDLNFTVIGEPVVIYCQPADDYLPDPEAVMITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+ E +FA+ I + F PGT +GYN I FDDE++R +F+RN +PY W+
Sbjct: 69 TPQVAQKRGVREAEFANHIHEAFSVPGTCIMGYNNIRFDDEVSRNLFYRNFFDPYAYSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
SRWDL+++++A Y L P GI WP ++G PSFKLEHL+ N + H +AHDA+SDV A
Sbjct: 129 QGNSRWDLLDMLRACYALRPDGIVWPENDDGFPSFKLEHLTRANGVEHTQAHDAMSDVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +ARL++ P+LF+++ +LR K V A I P +P +++ MF + S + P+
Sbjct: 189 TIAMARLLKQAQPKLFDYLYALRNKNKVSALIDIPQMKPLVHVSGMFGAARGNTSWIVPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L D + L D +++R L ++ ED +PI ++H+N+ P
Sbjct: 249 AWHPDNRNAVIVCDLAGDIQPLLALDADELRTRLYTRRELLAEDESPVPIKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
V++ L R D N++ N++ K + L + ++D
Sbjct: 308 VLAPASTLRPEDAERLGIDRQHCLNNLQLLRQ--NSSVREKVVALFADAPPFEAAKDVDL 365
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
+LY+ F S D +AI+R + L +N F ++++EEL+F YRARNF TL +E +
Sbjct: 366 QLYDGFFSDADRAAMAIIRKTDAQHLPALNLQFADRRVEELLFRYRARNFPGTLDEQEQQ 425
Query: 729 RWKKYRISRFYNKKNNLYNINMFYLEIESLLKK--ANEHDTKILNALLMYGK 778
RW +R F ++ + ++ ++ L ++ +E T L AL Y +
Sbjct: 426 RWLAHRREVFTAER-----LQNYFDTLDQLYQQHDGDEKKTTQLKALFAYAQ 472
>gi|423698981|ref|ZP_17673471.1| exodeoxyribonuclease I [Pseudomonas fluorescens Q8r1-96]
gi|387996303|gb|EIK57633.1| exodeoxyribonuclease I [Pseudomonas fluorescens Q8r1-96]
Length = 477
Score = 340 bits (872), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 168/425 (39%), Positives = 252/425 (59%), Gaps = 11/425 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ WYDYET G+N R DRP Q A IRTD LN ID P+ LYC+P+ D LP P AC IT
Sbjct: 2 TSIFWYDYETTGINPRCDRPLQVAGIRTDFELNEIDEPVNLYCRPSDDILPHPAACAITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPTCLAEKGLSEADFMTRVHGQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI++++A Y L P GI WP + +G+ + KLE L+ N + H +AHDALSDVR
Sbjct: 122 QGGNSRWDLIDLVRAAYALRPQGIVWP-QEDGRVTLKLERLTAANGIDHGQAHDALSDVR 180
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARLIR PRL++++ LR K+ V+ +I + +P +I+ FS+ +YI L+ P
Sbjct: 181 ATIALARLIRQQQPRLYDWLFQLRSKQKVMDQIR--LLQPMVHISGRFSAARNYIGLVLP 238
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP N+N LI +L DP+ L +D +R L ++ E +P+ +IH+N+ P
Sbjct: 239 LAWHPKNRNALIVCDLHLDPQGLLDHDAESLRQRLYTRREELLEGELPVPLKLIHINKCP 298
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELNI 666
VI+ L VL + R + D+ + A + + +W+ K+ Y + +
Sbjct: 299 -VIAPLSVLRAEDQQRLELDMEGYQQR---ALRLTDAQKVWQDKLQAIYGREDFTASEDP 354
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+++LY F+ +D +R P +L+ + F++++L EL+F YRARNF +TL+ +E
Sbjct: 355 EQQLYAGFLGDRDRRLCEQVRMADPLQLTQERWPFDDERLPELLFRYRARNFPDTLNPEE 414
Query: 727 LKRWK 731
RW+
Sbjct: 415 HGRWR 419
>gi|421522820|ref|ZP_15969460.1| exonuclease I [Pseudomonas putida LS46]
gi|402753313|gb|EJX13807.1| exonuclease I [Pseudomonas putida LS46]
Length = 477
Score = 340 bits (871), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 171/474 (36%), Positives = 265/474 (55%), Gaps = 12/474 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ W+DYET G+N R DRP Q A +RTD LN ID PI LYC+P+ D LP P ACL+T
Sbjct: 2 TSSIFWHDYETTGINPRCDRPLQVAGVRTDFDLNEIDEPISLYCRPSDDILPHPAACLVT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G+ E +F + + +PGT GYNT+ FDDE+TR+ +RN +PY RE
Sbjct: 62 GITPQLLAEQGLCEAEFMTRVHAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI++++ Y L P GI WP + +G+ S +LE LS N + H AH+ALSDV
Sbjct: 122 WQGGNSRWDLIDIVRTAYALRPEGIEWP-QQDGRTSLRLELLSKANGIDHGHAHEALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR P+L++++ LR K V+ +I + +P +I+ FS+ +Y+ ++
Sbjct: 181 RATIALARLIRQKQPKLYDWLFQLRSKHKVMEQIR--LLQPLVHISGRFSAARNYLGVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L + L +R L + + E +P+ ++ +NR
Sbjct: 239 PLAWHPRNRNALIVCDLHQETLPLLRESAEVLRQRLYTRHDELAEGELPVPLKLVQINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELN 665
P V++ L VL R DL + N W+ K+ Y + +
Sbjct: 299 P-VVAPLSVLRPVDQQRLGLDLTLLQSR---GEQLANQQAQWQEKLEHIYGKDEFAPSED 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY FI +D +R++ P +LS+ ++ F++ +L EL+F YRARNF ETL+ +
Sbjct: 355 PEQQLYEGFIGDRDRRLCEQVRALEPAQLSHGHWMFDDPRLPELLFRYRARNFPETLTPE 414
Query: 726 ELKRWKKYRISRFYNKKNNLYN-INMFYLEIESLLKKANEHDTKILNALLMYGK 778
E +RW + R + + N + F + + A+E ++L A ++ +
Sbjct: 415 ERQRWYGFCQQRLSDPQWGAPNTLGDFEQARQQAWEGADEAGRRVLEAWQLHAR 468
>gi|398909586|ref|ZP_10654627.1| exonuclease I [Pseudomonas sp. GM49]
gi|398187822|gb|EJM75149.1| exonuclease I [Pseudomonas sp. GM49]
Length = 476
Score = 340 bits (871), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 165/426 (38%), Positives = 252/426 (59%), Gaps = 12/426 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ WYDYET G+N R DRP Q A +RTD LN ID P+ LYC+P+ D LP P AC IT
Sbjct: 2 TSIFWYDYETTGINPRCDRPLQMAGLRTDFDLNEIDEPVNLYCQPSDDILPHPAACAITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPGQLQAQGLSEADFMTRVHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+V++A Y L P G+ WP + G+ + KLE L+ N + H AH+ALSDVR
Sbjct: 122 QGGNSRWDLIDVVRAAYALRPDGMVWPTDDEGRVTLKLERLTAANGIDHGNAHEALSDVR 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARLIR P+L++++ LR K+ V+ +I + +P +++ FS+ SY+ ++ P
Sbjct: 182 ATIALARLIREKQPKLYDWLFQLRSKQKVMDQIR--LLQPLVHVSGRFSAARSYVGVVLP 239
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP NKN LI +L DP+ + D +R L +++ E +P+ +IH+N+ P
Sbjct: 240 LAWHPRNKNALIVCDLHLDPQGLIDLDAESLRQRLYTRRDELAEGELPVPLKLIHINKCP 299
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTY-IW-KKIFLDYKINNSDLELN 665
V++ L VL R D+ + + LN+ +W KI Y + +
Sbjct: 300 -VVAPLSVLRQEDQQRLGLDMTLYQQRVL----RLNDAQKVWLDKILAIYAREDFSPSQD 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY+ FI +D +R++ P +L+ + F++++L EL+F YRARNF +TL+ +
Sbjct: 355 PEQQLYDGFIGDRDRRLCEQVRTVDPMQLAQEQWPFDDERLPELLFRYRARNFPDTLNPE 414
Query: 726 ELKRWK 731
E +RW+
Sbjct: 415 EQERWR 420
>gi|398955957|ref|ZP_10676704.1| exonuclease I [Pseudomonas sp. GM33]
gi|398150423|gb|EJM39016.1| exonuclease I [Pseudomonas sp. GM33]
Length = 476
Score = 340 bits (871), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 170/457 (37%), Positives = 261/457 (57%), Gaps = 18/457 (3%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ WYDYET G+N R DRP Q A +RTD LN ID P+ LYC+P+ D LP P AC IT
Sbjct: 2 TSIFWYDYETTGINPRCDRPLQMAGLRTDFDLNEIDEPVNLYCQPSDDILPHPAACAITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPGQLQAQGLSEADFMTRVHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+V++A Y L P G+ WP + G+ + KLE L+ N + H AH+ALSDVR
Sbjct: 122 QGGNSRWDLIDVVRAAYALRPDGLQWPTDDEGRVTLKLERLTAANGIDHGNAHEALSDVR 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARLIR P+L+ ++ LR K+ V+ +I + +P +++ FS+ SY+ ++ P
Sbjct: 182 ATIALARLIREKQPKLYAWLFQLRSKQKVMDQIR--LLQPLVHVSGRFSAARSYVGVVLP 239
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP NKN LI +L DP+ L D +R L + + E +P+ +IH+N+ P
Sbjct: 240 LAWHPRNKNALIVCDLHLDPQGLLDLDAESLRQRLYTRHDELAEGELPVPLKLIHINKCP 299
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLD-----YKINNSDL 662
V++ L VL R D+ + + LN+ +K++LD Y +
Sbjct: 300 -VVAPLSVLRQEDQQRLGLDMALYQQRVL----RLNDA---RKVWLDKVLAIYAREDFSQ 351
Query: 663 ELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
+ +++LY+ FI +D +R++ P +L+ + F++++L EL+F YRARNF +TL
Sbjct: 352 SQDPEQQLYDGFIGDRDRRLCEQVRTVDPMQLAQEQWPFDDERLPELLFRYRARNFPDTL 411
Query: 723 SYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLL 759
+ +E +RW+ + R + N ++E + L
Sbjct: 412 NAEEQERWRIFCQKRLSDPGWGAPNTLESFVEAAAQL 448
>gi|386013703|ref|YP_005931980.1| SbcB [Pseudomonas putida BIRD-1]
gi|313500409|gb|ADR61775.1| SbcB [Pseudomonas putida BIRD-1]
Length = 477
Score = 340 bits (871), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 171/474 (36%), Positives = 265/474 (55%), Gaps = 12/474 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ W+DYET G+N R DRP Q A +RTD LN ID PI LYC+P+ D LP P ACL+T
Sbjct: 2 TSSIFWHDYETTGINPRCDRPLQVAGLRTDFDLNEIDEPISLYCRPSDDILPHPAACLVT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G+ E +F + + +PGT GYNT+ FDDE+TR+ +RN +PY RE
Sbjct: 62 GITPQLLAEQGLCEAEFMTRVHAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI++++ Y L P GI WP + +G+ S +LE LS N + H AH+ALSDV
Sbjct: 122 WQGGNSRWDLIDIVRTAYALRPEGIQWP-QQDGRTSLRLELLSKANGIDHGHAHEALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR P+L++++ LR K V+ +I + +P +I+ FS+ +Y+ ++
Sbjct: 181 RATIALARLIRQKQPKLYDWLFQLRSKHKVMEQIR--LLQPLVHISGRFSAARNYLGVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L + L +R L + + E +P+ ++ +NR
Sbjct: 239 PLAWHPRNRNALIVCDLHQETLPLLRESAEVLRQRLYTRHDELAEGELPVPLKLVQINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELN 665
P V++ L VL R DL + N W+ K+ Y + +
Sbjct: 299 P-VVAPLSVLRPVDQQRLGLDLTLLQSR---GEQLANQQAQWQEKLEHIYGKDEFSPSED 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY FI +D +R++ P +LS+ ++ F++ +L EL+F YRARNF ETL+ +
Sbjct: 355 PEQQLYEGFIGDRDRRLCEQVRALEPAQLSHGHWMFDDPRLPELLFRYRARNFPETLTGE 414
Query: 726 ELKRWKKYRISRFYNKKNNLYN-INMFYLEIESLLKKANEHDTKILNALLMYGK 778
E +RW + R + + N + F + + A+E ++L A ++ +
Sbjct: 415 ERQRWYGFCQQRLSDPQWGAPNTLGDFEKARQQAWEGADEAGRRVLEAWQLHAR 468
>gi|227357738|ref|ZP_03842087.1| exodeoxyribonuclease I [Proteus mirabilis ATCC 29906]
gi|227162067|gb|EEI47081.1| exodeoxyribonuclease I [Proteus mirabilis ATCC 29906]
Length = 476
Score = 339 bits (870), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 179/471 (38%), Positives = 266/471 (56%), Gaps = 11/471 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF YDYETFG + DRP QFA +RTD+ N I++P+++YCKP D+LP P A +IT I
Sbjct: 9 TFYIYDYETFGTHPAMDRPAQFAGVRTDMDFNIIEDPLVIYCKPNDDYLPQPEAVMITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L NG+ E +F I + F +P + +GYN + FDDE+TR + +RN +PY W+
Sbjct: 69 TPQIALKNGVSEAEFTRQIHQAFSQPNSCIMGYNNLRFDDEVTRNILYRNFYDPYAYSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
SRWDL++V++A Y L P GI WP ++G PSF+LE L+ N +SH+ AHDA+SDV A
Sbjct: 129 KGNSRWDLLDVLRACYALRPEGINWPENDDGFPSFRLELLTKANGISHENAHDAMSDVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+ ++ PR+F++ +LR K+ V A I P P +++ MF + S +SL+ P+
Sbjct: 189 TIAMAKKLKQAQPRMFDYFFNLRDKRKVQALIDIPTMTPLVHVSGMFGAARSNLSLVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L D L ++R+ L ++ D +PI ++H+N+ PI
Sbjct: 249 AWHPDNRNAVIVCDLAADISPLLTLTSEQLRERLYTPRSELSADEPPVPIKLLHINKCPI 308
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL-NID 667
V L S R D++ N + +L+N I K+ + ++D
Sbjct: 309 VAPK-NTLRSQDADRIGLDIDNCLNN---QAILLSNPEIRNKVVEIFAQQTPFTPADDVD 364
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LYN F S D + I+RS P+ L +N FE+ ++E L F YRARNF TL+Y E
Sbjct: 365 AQLYNGFFSDNDRSAMEIIRSTQPQNLPALNLTFEDPRMEPLFFRYRARNFPATLTYDEQ 424
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGK 778
+RW +R + +K Y IN L E NE K L L +Y +
Sbjct: 425 QRWLAHRKEQLTPEKLTEY-INTIQLLAEE--HSDNEEKLKQLQELYLYAQ 472
>gi|107100101|ref|ZP_01364019.1| hypothetical protein PaerPA_01001122 [Pseudomonas aeruginosa PACS2]
Length = 480
Score = 339 bits (870), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 175/473 (36%), Positives = 269/473 (56%), Gaps = 22/473 (4%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
N++ WYDYET G++ RRDRP Q A IRTD LN I P+ LYC+P+ D LP P ACLIT
Sbjct: 4 NASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLIT 63
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G+ E F + + +P T GYN++ FDDE+TR+ +RN +PY RE
Sbjct: 64 GITPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYARE 123
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI++++ Y L P GI WP + +G+ S KLE L+ N L H +AHDALSDV
Sbjct: 124 WQGGNSRWDLIDMVRTAYALRPEGIQWP-QLDGRLSLKLEMLTAANGLEHGQAHDALSDV 182
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR PRL++++ LR K VL ++ + +P +++ FS++ ++S++
Sbjct: 183 RATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVR--LLQPLVHVSGRFSAERHFLSVVL 240
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L DP L +R L +++ E +P+ I +NR
Sbjct: 241 PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRC 300
Query: 607 PIVISNLKVLSSNLMFRYKFDLN-CAFKNIKCASSILNNTYIWK----KIFLDYKINNSD 661
P V++ L VL + R +L+ C K A + + +W ++ + + SD
Sbjct: 301 P-VVAPLSVLRAEDRQRTGIELDECQQK----AELLRQHQTVWADKLTALYGEESFSASD 355
Query: 662 LELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
+ +++LY+ FI +D LR P++L+ + F++ +L+EL F YRARNF ET
Sbjct: 356 ---DPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPET 412
Query: 722 LSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALL 774
L+ E ++W+ + +R +++ Y E+ L+ + L A+L
Sbjct: 413 LNAAERQQWESFCRNRLSHEE---YGAPNTLPAFEAALEACRQEQGGTLPAVL 462
>gi|397170469|ref|ZP_10493882.1| exonuclease I [Alishewanella aestuarii B11]
gi|396087712|gb|EJI85309.1| exonuclease I [Alishewanella aestuarii B11]
Length = 477
Score = 339 bits (870), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 182/474 (38%), Positives = 271/474 (57%), Gaps = 11/474 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F +YD+ET+G + ++DRP QFA IRTD LN I P M YC+ A D+LP P A LIT +
Sbjct: 6 SFYFYDFETWGADPKKDRPAQFAGIRTDHELNIIGEPEMWYCQLANDYLPHPAAALITGL 65
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C G+ E +F I F P T +GYN++ FDDE+TR+ +RN + Y REW+
Sbjct: 66 TPQLCNKKGLVETEFMQRILNAFSTPNTCVLGYNSLRFDDEVTRYGLYRNFYDVYGREWQ 125
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
SRWDLI++++ Y L P GI WP +++G PSFKLE L+ NNL H AHDALSDV A
Sbjct: 126 QGNSRWDLIDLVRTCYALRPEGINWPLRDDGSPSFKLELLTKANNLEHSAAHDALSDVYA 185
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF+++ LRKK+ V I P +I+ F + S + P+
Sbjct: 186 TIAIAKLIKQQQPKLFHYLFELRKKQKVAELIDVAGLTPLVHISSKFPAIQGCASWIVPL 245
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN +I +NL DP+ L +D+ ++ L K + E + + +IHLN+ P
Sbjct: 246 AYHPSNKNAVICYNLQLDPRALLDDDLATLQQKLYRKSSELAEGEQRLGLKLIHLNKCP- 304
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDLELNID 667
V++N K LS+ D N +++ + N + +K+ Y + + E N D
Sbjct: 305 VLANAKTLSAERATELGIDRNQCLHHLEW---LRQNRQLQQKVVELYQQAGDYGAETNPD 361
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LYN FIS D K+ L + P L+ + F ++L L FLYRARN+ +L+ EL
Sbjct: 362 YQLYNGFISDADKQKMQQLHQLDPASLTADSLIFSEERLNRLYFLYRARNYPLSLTDSEL 421
Query: 728 KRWKKYRISRFYNKKNNL-YNINMFYLEIESLLKK--ANEHDTKILNALLMYGK 778
++W++YR + + +N + F L +E+L + A+E IL AL Y +
Sbjct: 422 QKWQRYRTDKLMHGLDNPNLTLEQFSLALENLAHEHSADEQKMAILKALYRYAE 475
>gi|377577431|ref|ZP_09806413.1| exodeoxyribonuclease I [Escherichia hermannii NBRC 105704]
gi|377541169|dbj|GAB51578.1| exodeoxyribonuclease I [Escherichia hermannii NBRC 105704]
Length = 474
Score = 339 bits (870), Expect = 6e-90, Method: Composition-based stats.
Identities = 180/474 (37%), Positives = 266/474 (56%), Gaps = 22/474 (4%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG DRP QFAAIRTD+ N I P + YCKPA D+LP P A LIT I
Sbjct: 9 TFLFHDYETFGTRPALDRPAQFAAIRTDLDFNIIGEPEVFYCKPADDYLPQPEAVLITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G E +FA I +F P T VGYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQIAAARGTSEAEFAKRIHDLFTVPNTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
NN SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 NNNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTVANGIEHANAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF ++ S R K+ + I P +P +++ MF + S + P+
Sbjct: 189 TIAMAKLVKAQQPRLFGYLYSHRTKQKLATLIDIPQMKPLVHVSGMFGAWRGNTSWIAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R+ L K +D +PI ++HLN+ PI
Sbjct: 249 AWHPDNRNAVIMVDLAGDMTPLLELDADALRERLYTAKTDLGDDAAVPIKLVHLNKCPI- 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLE-----L 664
++ L R D N+K + ++ + +K+ Y +D E
Sbjct: 308 LAQANTLRPEDADRLGIDRQRCLDNLKI---LRDHPDVREKVVALY----ADAEPFTPSE 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
++D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL +
Sbjct: 361 DVDTQLYNGFFSDADRAGMRIILQTDPQNLPALDISFVDKRIEKLLFNYRARNFPGTLDH 420
Query: 725 KELKRWKKYRISRFYNKKNNLY--NINMFYLEIESLLKKANEHDTKILNALLMY 776
+E +RW ++R +RF + Y + M Y + E ++ +L AL Y
Sbjct: 421 EEQQRWLRHRQARFTPEFLQAYAQELEMLYGQYE-----GDKEKIGLLRALYQY 469
>gi|440740822|ref|ZP_20920295.1| exonuclease I [Pseudomonas fluorescens BRIP34879]
gi|447918108|ref|YP_007398676.1| exonuclease I [Pseudomonas poae RE*1-1-14]
gi|440375701|gb|ELQ12402.1| exonuclease I [Pseudomonas fluorescens BRIP34879]
gi|445201971|gb|AGE27180.1| exonuclease I [Pseudomonas poae RE*1-1-14]
Length = 475
Score = 339 bits (869), Expect = 7e-90, Method: Composition-based stats.
Identities = 171/453 (37%), Positives = 265/453 (58%), Gaps = 15/453 (3%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ WYDYET G+N R DRP Q A IRTD LN ID P+ L+C P+ D LP P AC IT
Sbjct: 2 TSIFWYDYETTGINPRSDRPLQVAGIRTDHDLNEIDAPVNLFCLPSDDILPHPAACAITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPAILAQKGLAEADFMTRVHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+V++ Y L P GITWP + +G+ + KL+ L+ N + H +AHDALSDVR
Sbjct: 122 QGGNSRWDLIDVVRTAYALRPEGITWP-EQDGRVTLKLDRLTQANGIDHGQAHDALSDVR 180
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARL+R P+LF+++ LR K+ V+ ++ + +P +I+ FS++ Y+ ++ P
Sbjct: 181 ATIALARLVRKKQPKLFDWLFQLRSKQRVMDQV--RLLQPMVHISGRFSAERHYLGVVLP 238
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP N+N LI +L DP+ L D +R L +++ E +P+ ++H+NR P
Sbjct: 239 LAWHPRNRNALIVCDLGLDPQGLLALDAETLRQRLYTRRDELAEGELPVPLKLVHINRCP 298
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELNI 666
V++ L VL + R + D++ A + + +W+ K+ Y ++ +
Sbjct: 299 -VVAPLSVLRAQDCERLQLDMDSYQAR---ALRLTDAQDVWRDKLMAIYAEDDFAANEDP 354
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+++LY FI +D +R+ P +L+ + F++ +L EL+F YRARNF ETLS++E
Sbjct: 355 EQQLYAGFIGDRDRRLCEQVRAAEPAQLARQQWPFDDHRLPELLFRYRARNFAETLSHEE 414
Query: 727 LKRWKKYRISRFYNKK----NNLYNINMFYLEI 755
+RWK + R + + N L + N+ E+
Sbjct: 415 QQRWKLFCQQRLSDAQWGAPNTLESFNLARREL 447
>gi|54308882|ref|YP_129902.1| exonuclease I [Photobacterium profundum SS9]
gi|46913312|emb|CAG20100.1| putative exonuclease I [Photobacterium profundum SS9]
Length = 474
Score = 339 bits (869), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 177/469 (37%), Positives = 266/469 (56%), Gaps = 12/469 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
T W DYETFG DR QFA +RTD+ N I P+++YCKP D+LP P ACLIT I
Sbjct: 8 TLYWIDYETFGATPATDRACQFAGVRTDMDFNIIGKPLVIYCKPPVDYLPSPEACLITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+PE +F + I KP T +GYN + FDDE+TR+ +RN +PY W+
Sbjct: 68 TPQEAQEKGLPEPEFIAQIHAELSKPNTCVIGYNNVRFDDEVTRYTLYRNFYDPYAWGWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++ Y L P G+ WP + G PSFKLEHLS N + H AHDA++DV A
Sbjct: 128 NGNSRWDLLDIMRTCYALRPEGVNWPNNDEGLPSFKLEHLSVANGIEHANAHDAMADVYA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA++++ N P+LFN++ LR K+ + I P +++ MF S + P+
Sbjct: 188 TIELAKILKTNQPKLFNYLFDLRHKRKLQELIDIVNLTPLVHVSGMFGVGCGNTSWIVPM 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN +IT NL DP + D ++IR+ + K++ K D IP+ ++HLN+ P
Sbjct: 248 AWHPDNKNAVITVNLAQDPTPLIELDADQIRERMYTKRSELKPDELPIPVKLVHLNKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLE-LNID 667
V++ K L + R D KN++ + + + +K+ + + E ++D
Sbjct: 307 VLAPAKTLKAEDADRIGIDRAQCLKNLQI---LKEHPEVREKLVAIFAVQREYKENTDVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY+ F S D + I+R +P+ L+ + E+K+++ L+F YRARNF TL+Y+E
Sbjct: 364 SMLYDGFFSTSDRSSIDIIRESTPEALAEIKLNVEDKRIKPLLFRYRARNFPMTLNYEEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMY 776
++W K+ F+ Y N + E+ ++NEH KIL AL Y
Sbjct: 424 QKW-KHHCQDFFQDNLPAYMENFEAVATEN---QSNEHKMKILKALYDY 468
>gi|418584047|ref|ZP_13148113.1| exonuclease I [Pseudomonas aeruginosa MPAO1/P1]
gi|418589579|ref|ZP_13153500.1| exonuclease I [Pseudomonas aeruginosa MPAO1/P2]
gi|421518868|ref|ZP_15965541.1| exonuclease I [Pseudomonas aeruginosa PAO579]
gi|375046526|gb|EHS39087.1| exonuclease I [Pseudomonas aeruginosa MPAO1/P1]
gi|375051435|gb|EHS43902.1| exonuclease I [Pseudomonas aeruginosa MPAO1/P2]
gi|404346273|gb|EJZ72623.1| exonuclease I [Pseudomonas aeruginosa PAO579]
Length = 478
Score = 339 bits (869), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 175/473 (36%), Positives = 269/473 (56%), Gaps = 22/473 (4%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
N++ WYDYET G++ RRDRP Q A IRTD LN I P+ LYC+P+ D LP P ACLIT
Sbjct: 2 NASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLIT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G+ E F + + +P T GYN++ FDDE+TR+ +RN +PY RE
Sbjct: 62 GITPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI++++ Y L P GI WP + +G+ S KLE L+ N L H +AHDALSDV
Sbjct: 122 WQGGNSRWDLIDMVRTAYALRPEGIQWP-QLDGRLSLKLEMLTAANGLEHGQAHDALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR PRL++++ LR K VL ++ + +P +++ FS++ ++S++
Sbjct: 181 RATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVR--LLQPLVHVSGRFSAERHFLSVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L DP L +R L +++ E +P+ I +NR
Sbjct: 239 PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLN-CAFKNIKCASSILNNTYIWK----KIFLDYKINNSD 661
P V++ L VL + R +L+ C K A + + +W ++ + + SD
Sbjct: 299 P-VVAPLSVLRAEDRQRTGIELDECQQK----AELLRQHQTVWADKLTALYGEESFSASD 353
Query: 662 LELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
+ +++LY+ FI +D LR P++L+ + F++ +L+EL F YRARNF ET
Sbjct: 354 ---DPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPET 410
Query: 722 LSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALL 774
L+ E ++W+ + +R +++ Y E+ L+ + L A+L
Sbjct: 411 LNVAERQQWESFCRNRLSHEE---YGAPNTLPAFEAALEACRQEQGGTLPAVL 460
>gi|15599512|ref|NP_253006.1| exonuclease I [Pseudomonas aeruginosa PAO1]
gi|421155680|ref|ZP_15615146.1| exonuclease I [Pseudomonas aeruginosa ATCC 14886]
gi|9950540|gb|AAG07704.1|AE004848_3 exodeoxyribonuclease I [Pseudomonas aeruginosa PAO1]
gi|404519857|gb|EKA30566.1| exonuclease I [Pseudomonas aeruginosa ATCC 14886]
Length = 480
Score = 339 bits (869), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 175/473 (36%), Positives = 269/473 (56%), Gaps = 22/473 (4%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
N++ WYDYET G++ RRDRP Q A IRTD LN I P+ LYC+P+ D LP P ACLIT
Sbjct: 4 NASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLIT 63
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G+ E F + + +P T GYN++ FDDE+TR+ +RN +PY RE
Sbjct: 64 GITPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYARE 123
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI++++ Y L P GI WP + +G+ S KLE L+ N L H +AHDALSDV
Sbjct: 124 WQGGNSRWDLIDMVRTAYALRPEGIQWP-QLDGRLSLKLEMLTAANGLEHGQAHDALSDV 182
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR PRL++++ LR K VL ++ + +P +++ FS++ ++S++
Sbjct: 183 RATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVR--LLQPLVHVSGRFSAERHFLSVVL 240
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L DP L +R L +++ E +P+ I +NR
Sbjct: 241 PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRC 300
Query: 607 PIVISNLKVLSSNLMFRYKFDLN-CAFKNIKCASSILNNTYIWK----KIFLDYKINNSD 661
P V++ L VL + R +L+ C K A + + +W ++ + + SD
Sbjct: 301 P-VVAPLSVLRAEDRQRTGIELDECQQK----AELLRQHQTVWADKLTALYGEESFSASD 355
Query: 662 LELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
+ +++LY+ FI +D LR P++L+ + F++ +L+EL F YRARNF ET
Sbjct: 356 ---DPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPET 412
Query: 722 LSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALL 774
L+ E ++W+ + +R +++ Y E+ L+ + L A+L
Sbjct: 413 LNVAERQQWESFCRNRLSHEE---YGAPNTLPAFEAALEACRQEQGGTLPAVL 462
>gi|218893406|ref|YP_002442275.1| exonuclease I [Pseudomonas aeruginosa LESB58]
gi|218773634|emb|CAW29448.1| exodeoxyribonuclease I [Pseudomonas aeruginosa LESB58]
Length = 480
Score = 339 bits (869), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 175/473 (36%), Positives = 268/473 (56%), Gaps = 22/473 (4%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
N++ WYDYET G++ RRDRP Q A IRTD LN I P+ LYC+P+ D LP P ACLIT
Sbjct: 4 NASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLIT 63
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G+ E F + + +P T GYN++ FDDE+TR+ +RN +PY RE
Sbjct: 64 GITPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYARE 123
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI++++ Y L P GI WP + +G+ S KLE L+ N L H +AHDALSDV
Sbjct: 124 WQGGNSRWDLIDMVRTAYALRPEGIQWP-QLDGRLSLKLEMLTAANGLEHGQAHDALSDV 182
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR PRL++++ LR K VL ++ + +P +++ FS++ ++S+
Sbjct: 183 RATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVR--LLQPLVHVSGRFSAERHFLSVAL 240
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L DP L +R L +++ E +P+ I +NR
Sbjct: 241 PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRC 300
Query: 607 PIVISNLKVLSSNLMFRYKFDLN-CAFKNIKCASSILNNTYIWK----KIFLDYKINNSD 661
P V++ L VL + R +L+ C K A + + +W ++ + + SD
Sbjct: 301 P-VVAPLSVLRAEDRQRTGIELDECQQK----AELLRQHQTVWADKLTALYGEESFSASD 355
Query: 662 LELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
+ +++LY+ FI +D LR P++L+ + F++ +L+EL F YRARNF ET
Sbjct: 356 ---DPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPET 412
Query: 722 LSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALL 774
L+ E ++W+ + +R +++ Y E+ L+ + L A+L
Sbjct: 413 LNVAERQQWESFCRNRLSHEE---YGAPNTLPAFEAALEACRQEQGGTLPAVL 462
>gi|398927180|ref|ZP_10662863.1| exonuclease I [Pseudomonas sp. GM48]
gi|398170155|gb|EJM58110.1| exonuclease I [Pseudomonas sp. GM48]
Length = 476
Score = 339 bits (869), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 170/454 (37%), Positives = 260/454 (57%), Gaps = 12/454 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ WYDYET G+N R DRP Q A +RTD LN ID P+ LYC+P+ D LP P AC IT
Sbjct: 2 TSIFWYDYETTGINPRCDRPLQMAGLRTDFDLNEIDEPVNLYCQPSDDILPHPAACTITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPGQLQAQGLSEADFMTRVHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+V++A Y L P G+ WP + G+ + KLE L+ N + H AH+ALSDVR
Sbjct: 122 QGGNSRWDLIDVVRAAYALRPDGMQWPTDDEGRVTLKLERLTAANGIDHGNAHEALSDVR 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARLIR P+L++++ LR K+ V+ +I + +P +++ FS+ SY+ ++ P
Sbjct: 182 ATIALARLIREKQPKLYDWLFQLRSKQKVMDQIR--LLQPLVHVSGRFSAARSYVGVVLP 239
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP NKN LI +L DP+ L D +R L ++ E +P+ +IH+N+ P
Sbjct: 240 LAWHPRNKNALIVCDLHLDPQSLLDLDAESLRQRLYCRREELAEGELPVPLKLIHINKCP 299
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTY-IW-KKIFLDYKINNSDLELN 665
V++ L VL R D+ + + LN+ +W KI Y + +
Sbjct: 300 -VVAPLSVLRKEDQQRLGLDMALYQQRV----LRLNDAQKVWLDKILAIYAREDFSPNQD 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY+ FI +D +R++ P +L+ + F++++L EL+F YRARNF +TL+ +
Sbjct: 355 PEQQLYDGFIGDRDRRLCEQVRTVDPMQLAQEQWPFDDERLPELLFRYRARNFPDTLNSE 414
Query: 726 ELKRWKKYRISRFYNKKNNLYNINMFYLEIESLL 759
E +RW+ + R + N ++E + L
Sbjct: 415 EHERWRIFCQKRLSEPEWGAPNTLESFVETAAQL 448
>gi|330811421|ref|YP_004355883.1| exodeoxyribonuclease I [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327379529|gb|AEA70879.1| Exodeoxyribonuclease I [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 477
Score = 339 bits (869), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 167/425 (39%), Positives = 252/425 (59%), Gaps = 11/425 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ WYDYET G+N R DRP Q A IRTD LN ID P+ LYC+P+ D LP P AC IT
Sbjct: 2 TSIFWYDYETTGINPRCDRPLQVAGIRTDFELNEIDEPVNLYCRPSDDILPHPAACAITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPTCLAEKGLSEADFMTRVHGQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI++++A Y L P GI WP + +G+ + KLE L+ N + H +AHDALSDVR
Sbjct: 122 QGGNSRWDLIDLVRAAYALRPQGIVWP-QEDGRVTLKLERLTAANGIDHGQAHDALSDVR 180
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARLIR PRL++++ LR K+ V+ +I + +P +I+ FS+ +YI ++ P
Sbjct: 181 ATIALARLIRQQQPRLYDWLFQLRSKQKVMDQIR--LLQPMVHISGRFSAARNYIGVVLP 238
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP N+N LI +L DP+ L +D +R L ++ E +P+ +IH+N+ P
Sbjct: 239 LAWHPKNRNALIVCDLHLDPQGLLDHDAESLRQRLYTRREELLEGELPVPLKLIHINKCP 298
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELNI 666
VI+ L VL + R + D+ + A + + +W+ K+ Y + +
Sbjct: 299 -VIAPLSVLRAEDQQRLELDMEGYQQR---ALRLTDAQKVWQDKLQAIYGREDFTASEDP 354
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+++LY F+ +D +R P +L+ + F++++L EL+F YRARNF +TL+ +E
Sbjct: 355 EQQLYAGFLGDRDRRLCEQVRMADPLQLTQERWPFDDERLPELLFRYRARNFPDTLNPEE 414
Query: 727 LKRWK 731
RW+
Sbjct: 415 HGRWR 419
>gi|117921013|ref|YP_870205.1| exonuclease I [Shewanella sp. ANA-3]
gi|117613345|gb|ABK48799.1| Exodeoxyribonuclease I subunit C [Shewanella sp. ANA-3]
Length = 470
Score = 339 bits (869), Expect = 8e-90, Method: Composition-based stats.
Identities = 176/471 (37%), Positives = 271/471 (57%), Gaps = 18/471 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+ W+DYETFG N +DRP QFA IRTD+ LN I P YCK + D+LP P A LIT I
Sbjct: 8 SIFWHDYETFGANPAKDRPAQFAGIRTDLDLNIISEPETFYCKQSTDYLPSPEAILITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+PE +F I +F +P T GYN++ FDDE+TR+ F+RN I+PY REW+
Sbjct: 68 TPQLANLKGLPETEFMGRIHALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N +RWD+I++++A Y P GI WP K +G PSFKLEHL+ N LSH+KAHDA+SDV A
Sbjct: 128 NGNTRWDIIDLVRACYAFRPDGIHWPLKEDGSPSFKLEHLTQANGLSHEKAHDAMSDVYA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+L+ + LR+K+ V A+I +P +++ S+ +L+ P+
Sbjct: 188 TIAMAKLIKEKQPKLYQYYFELRRKQAVSAQIDVLNMQPLAHVSSKISALQGCTTLIAPV 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN +I NL D D+ +I+ + + D IP+ +HLN+ P
Sbjct: 248 AHHPSNKNAIICVNLAMDLSPLFELDVEQIKTRMYTPRAELAADELPIPVKQVHLNKCPF 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
I++ K+L R D A + K + + + +K+ ++ + D
Sbjct: 308 -ITSAKILDDAQAERLNIDKAFAREQYK---RLKAHPELREKLAQLFEHEGEVTTTDPDL 363
Query: 669 ELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY+ F S D K+ I+R P+ L+ ++ F++ ++ E++F YRARN+ E L+ +E
Sbjct: 364 MLYSGGFFSPADKAKMEIIRHTLPQNLAALDLQFDDGRIPEMLFRYRARNYPELLNDQEA 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLK--KANEHDTKILNALLMY 776
+RW+ + R ++ + L++E+LL+ + +EH K+L AL Y
Sbjct: 424 QRWRTFCQQRLSDQD--------YLLKLENLLQDTEGDEHKQKLLAALCHY 466
>gi|254239017|ref|ZP_04932340.1| exodeoxyribonuclease I [Pseudomonas aeruginosa C3719]
gi|355650493|ref|ZP_09056128.1| hypothetical protein HMPREF1030_05214 [Pseudomonas sp. 2_1_26]
gi|420141452|ref|ZP_14649131.1| exonuclease I [Pseudomonas aeruginosa CIG1]
gi|421162655|ref|ZP_15621466.1| exonuclease I [Pseudomonas aeruginosa ATCC 25324]
gi|421170061|ref|ZP_15628037.1| exonuclease I [Pseudomonas aeruginosa ATCC 700888]
gi|421182375|ref|ZP_15639851.1| exonuclease I [Pseudomonas aeruginosa E2]
gi|126170948|gb|EAZ56459.1| exodeoxyribonuclease I [Pseudomonas aeruginosa C3719]
gi|354826773|gb|EHF10979.1| hypothetical protein HMPREF1030_05214 [Pseudomonas sp. 2_1_26]
gi|403245786|gb|EJY59563.1| exonuclease I [Pseudomonas aeruginosa CIG1]
gi|404524462|gb|EKA34805.1| exonuclease I [Pseudomonas aeruginosa ATCC 700888]
gi|404533511|gb|EKA43327.1| exonuclease I [Pseudomonas aeruginosa ATCC 25324]
gi|404541962|gb|EKA51301.1| exonuclease I [Pseudomonas aeruginosa E2]
Length = 480
Score = 339 bits (869), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 175/473 (36%), Positives = 268/473 (56%), Gaps = 22/473 (4%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
N++ WYDYET G++ RRDRP Q A IRTD LN I P+ LYC+P+ D LP P ACLIT
Sbjct: 4 NASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLIT 63
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G+ E F + + +P T GYN++ FDDE+TR+ +RN +PY RE
Sbjct: 64 GITPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYARE 123
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI++++ Y L P GI WP + +G+ S KLE L+ N L H +AHDALSDV
Sbjct: 124 WQGGNSRWDLIDMVRTAYALRPEGIQWP-QLDGRLSLKLEMLTAANGLEHGQAHDALSDV 182
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR PRL++++ LR K VL ++ + +P +++ FS++ ++S++
Sbjct: 183 RATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVR--LLQPLVHVSGRFSAERHFLSVVL 240
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L DP L +R L +++ E +P+ I +NR
Sbjct: 241 PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRC 300
Query: 607 PIVISNLKVLSSNLMFRYKFDL-NCAFKNIKCASSILNNTYIWK----KIFLDYKINNSD 661
P V++ L VL + R +L C K A + + +W ++ + + SD
Sbjct: 301 P-VVAPLSVLRAEDRQRTGIELEECQRK----AELLRQHQTVWADKLTALYGEESFSASD 355
Query: 662 LELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
+ +++LY+ FI +D LR P++L+ + F++ +L+EL F YRARNF ET
Sbjct: 356 ---DPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPET 412
Query: 722 LSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALL 774
L+ E ++W+ + +R +++ Y E+ L+ + L A+L
Sbjct: 413 LNVAERQQWESFCRNRLSHEE---YGAPNTLPAFEAALEACRQEQGGTLPAVL 462
>gi|94500901|ref|ZP_01307427.1| exodeoxyribonuclease I [Bermanella marisrubri]
gi|94427020|gb|EAT12002.1| exodeoxyribonuclease I [Oceanobacter sp. RED65]
Length = 478
Score = 339 bits (869), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 170/479 (35%), Positives = 271/479 (56%), Gaps = 15/479 (3%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
+ + WYD+ETFG + DRP QFA +RTD+ LN I P M YC+ A D+LP P AC+
Sbjct: 2 SATESIYWYDFETFGASPIWDRPAQFAGVRTDLDLNIIAEPDMFYCRQADDYLPHPIACM 61
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
IT I+PQ C + G+PE +F I +F++P T GYN+I FDDE+TR +RN +PY+
Sbjct: 62 ITGISPQTCQDKGLPEAEFIKRIHDLFMQPQTCVAGYNSIRFDDEVTRNTLYRNFFDPYQ 121
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
REW+N SRWD++++++ Y L P GI WP +GK SFKLE+LS N + H+ AHDALS
Sbjct: 122 REWQNGNSRWDILDMMRCAYSLRPDGIEWPKGEDGKVSFKLENLSAANGIIHENAHDALS 181
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+GLA+L++ P+L+ ++ LR+K+ V + RP +I+ MF + ++
Sbjct: 182 DVYATIGLAKLVKEKQPKLYQYLFELRRKEAVAPLLDVVNKRPVLHISGMFPVEKGCAAV 241
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFK----EDIPISMIHL 603
M P+ + P NKN +I ++L+ DP +I+ L K + E +P+ IH+
Sbjct: 242 MVPLAMEPKNKNAIICFDLMSDPTPLFELTAEQIQARLYTPKAELEAQGIERLPLKSIHI 301
Query: 604 NRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLE 663
N+ P+V+ K++ + ++ + N+ + I N + +K+ + + D E
Sbjct: 302 NKCPVVLP-AKMVQPEIAKKWGLSGDQIRSNL---AKIKNGPDLTEKL---QNVMSRDFE 354
Query: 664 LNIDEELY---NNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIE 720
+ D + F D + +R P+ L ++N F++++LEE++F YRARN+ E
Sbjct: 355 AHSDPDAMIYSGGFFGPTDKQAMETIRQSHPEALDDLNISFQDRRLEEMLFRYRARNYPE 414
Query: 721 TLSYKELKRWKKYRISRFYNKKNNLY-NINMFYLEIESLLKKANEHDTKILNALLMYGK 778
TL+ E ++W+ +R R N Y N +F ++ + A E +L L MY +
Sbjct: 415 TLTGDEFEQWETFRKQRLLGPTNGSYLNYELFAKALQEAAQTAPESQYPLLQDLQMYAE 473
>gi|402305279|ref|ZP_10824338.1| exodeoxyribonuclease I [Haemophilus sputorum HK 2154]
gi|400376392|gb|EJP29279.1| exodeoxyribonuclease I [Haemophilus sputorum HK 2154]
Length = 513
Score = 339 bits (869), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 178/473 (37%), Positives = 267/473 (56%), Gaps = 15/473 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F +YDYE+FG+N DRP QFA IRTD N I P+M YCK PD+LP P A ++T I
Sbjct: 5 SFFFYDYESFGVNPATDRPAQFAGIRTDHQFNIIGEPVMFYCKQTPDYLPTPEAVMVTGI 64
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C GI E +FA+ I + F +P T +GYN I +DDE+TR+ F+RN +PYE WK
Sbjct: 65 TPQLCNQEGISEPEFAARIHEQFSQPNTCIIGYNNIRYDDEMTRYTFFRNFFDPYEYSWK 124
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
SRWDL++V++A Y L P GI W + NG PSFKL+ L+ N ++H+ AHDA+SDV A
Sbjct: 125 QGNSRWDLLDVVRACYALRPEGIEWVHDENGLPSFKLDQLTKANGIAHENAHDAMSDVYA 184
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF+F + R KK I P +++ MF + S IS + P+
Sbjct: 185 TIAMAKLIQTKQPKLFDFFFTHRGKKETEKLIDTAEMTPLVHVSGMFGNARSNISWIAPL 244
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L D + L + +R+ L K+ + E +P+ +H+N+ PI
Sbjct: 245 AWHPTNQNEVICCDLTGDIQPLLTESADVLRERLYTKREALAEGVNPVPLKGVHINKCPI 304
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF-LDYKINNSDLELNID 667
++ KVL R D N+K + N + I +K+ + + N++
Sbjct: 305 -LAPAKVLLPENAARLGIDREACLANLKQLKA--NKSLIREKVTDIFTQTREFSASENVE 361
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY F S D +AILRS+ P++L++ F ++++E L+F YRAR+F ETLS E
Sbjct: 362 TTLYQGFFSAADKNNMAILRSLKPEELAHHGLKFADERVEPLLFHYRARHFPETLSRAEQ 421
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK--ILNALLMYGK 778
+W+KY + K + N + +L + E K +L +L Y +
Sbjct: 422 IKWQKYCHQKIDEKTESFTN------SLAALFTQYQEQPEKLALLESLAAYAE 468
>gi|289628502|ref|ZP_06461456.1| exonuclease I [Pseudomonas syringae pv. aesculi str. NCPPB 3681]
gi|289648244|ref|ZP_06479587.1| exonuclease I [Pseudomonas syringae pv. aesculi str. 2250]
gi|416014823|ref|ZP_11562540.1| exonuclease I [Pseudomonas syringae pv. glycinea str. B076]
gi|416028954|ref|ZP_11571843.1| exonuclease I [Pseudomonas syringae pv. glycinea str. race 4]
gi|422405708|ref|ZP_16482748.1| exonuclease I [Pseudomonas syringae pv. glycinea str. race 4]
gi|422583944|ref|ZP_16659061.1| exonuclease I [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|422597490|ref|ZP_16671762.1| exonuclease I [Pseudomonas syringae pv. lachrymans str. M301315]
gi|320325491|gb|EFW81553.1| exonuclease I [Pseudomonas syringae pv. glycinea str. B076]
gi|320327221|gb|EFW83235.1| exonuclease I [Pseudomonas syringae pv. glycinea str. race 4]
gi|330868768|gb|EGH03477.1| exonuclease I [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|330880763|gb|EGH14912.1| exonuclease I [Pseudomonas syringae pv. glycinea str. race 4]
gi|330987779|gb|EGH85882.1| exonuclease I [Pseudomonas syringae pv. lachrymans str. M301315]
Length = 476
Score = 338 bits (868), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 168/442 (38%), Positives = 260/442 (58%), Gaps = 11/442 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ WYDYET G+N R DR Q A IRTD LN I P+ L+C+ + D LP P AC+IT
Sbjct: 2 TSSIFWYDYETTGINPRNDRALQMAGIRTDTELNEIAPPVNLHCQLSDDILPHPVACMIT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITP G+ E F + + PGT GYNT+ FDDE+TR+ F+RN +PY RE
Sbjct: 62 GITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI+V++A Y L P GI WP + +G+ + KLE L+ N + H +AHDALSDV
Sbjct: 122 WQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR P+L++++ +LR K+ V ++ + +P +I+ FS+ +Y+ ++
Sbjct: 181 RATIALARLIREKQPKLYDYLFALRSKQKVQEQVR--LMQPLVHISGRFSAARNYLGVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L DP L +D ++ L + + E +P+ ++H+NR
Sbjct: 239 PLAWHPHNRNALIVCDLHLDPSPLLQDDAEILKQRLYTRHEALGEGELPVPLKLLHINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELN 665
P VI+ L VL S R + D+ A + A+ + + +W+ K+ + Y + +
Sbjct: 299 P-VIAPLGVLRSEDQQRLQLDM--AGYQAR-ATQLSESREVWQDKLSVLYGKEDFAASED 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY+ FI +D +R P++L+ + F++ +L EL+F YRARNF +TLS +
Sbjct: 355 PEQQLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSSE 414
Query: 726 ELKRWKKYRISRFYNKKNNLYN 747
E +RW+ + R + + N
Sbjct: 415 EQQRWQDFCQQRLSDPERGAPN 436
>gi|395445221|ref|YP_006385474.1| exonuclease I [Pseudomonas putida ND6]
gi|388559218|gb|AFK68359.1| exonuclease I [Pseudomonas putida ND6]
Length = 477
Score = 338 bits (868), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 171/474 (36%), Positives = 264/474 (55%), Gaps = 12/474 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ W+DYET G+N R DRP Q A +RTD LN ID PI LYC+P+ D LP P ACL+T
Sbjct: 2 TSSIFWHDYETTGINPRCDRPLQVAGLRTDFDLNEIDEPISLYCRPSDDILPHPAACLVT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G+ E +F + + +PGT GYNT+ FDDE+TR+ +RN +PY RE
Sbjct: 62 GITPQLLAEQGLCEAEFMTRVHAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI++++ Y L P GI WP + +G+ S +LE LS N + H AH+ALSDV
Sbjct: 122 WQGGNSRWDLIDIVRTAYALRPEGIEWP-QQDGRTSLRLELLSKANGIDHGHAHEALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR P+L++++ LR K V+ +I + +P +I+ FS+ +Y+ ++
Sbjct: 181 RATIALARLIRQKQPKLYDWLFQLRSKHKVMEQIR--LLQPLVHISGRFSAARNYLGVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L + L +R L + + E +P+ ++ +NR
Sbjct: 239 PLAWHPRNRNALIVCDLHQETLPLLRESAEVLRQRLYTRHDELAEGELPVPLKLVQINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELN 665
P V++ L VL R DL + N W+ K+ Y + +
Sbjct: 299 P-VVAPLSVLRPVDQQRLGLDLTLLQSR---GEQLANQQAQWQEKLEHIYGKDEFAPSED 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY FI +D +R++ P +LS+ + F++ +L EL+F YRARNF ETL+ +
Sbjct: 355 PEQQLYEGFIGDRDRRLCEQVRALEPAQLSHGQWMFDDPRLPELLFRYRARNFPETLTPE 414
Query: 726 ELKRWKKYRISRFYNKKNNLYN-INMFYLEIESLLKKANEHDTKILNALLMYGK 778
E +RW + R + + N + F + + A+E ++L A ++ +
Sbjct: 415 ERQRWYDFCQQRLSDPQWGAPNTLGDFEQARQQAWEGADEAGRRVLEAWQLHAR 468
>gi|386060467|ref|YP_005976989.1| exonuclease I [Pseudomonas aeruginosa M18]
gi|347306773|gb|AEO76887.1| exonuclease I [Pseudomonas aeruginosa M18]
Length = 478
Score = 338 bits (868), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 175/473 (36%), Positives = 268/473 (56%), Gaps = 22/473 (4%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
N++ WYDYET G++ RRDRP Q A IRTD LN I P+ LYC+P+ D LP P ACLIT
Sbjct: 2 NASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLIT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G+ E F + + +P T GYN++ FDDE+TR+ +RN +PY RE
Sbjct: 62 GITPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI++++ Y L P GI WP + +G+ S KLE L+ N L H +AHDALSDV
Sbjct: 122 WQGGNSRWDLIDMVRTAYALRPEGIQWP-QLDGRLSLKLEMLTAANGLEHGQAHDALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR PRL++++ LR K VL ++ + +P +++ FS++ ++S+
Sbjct: 181 RATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVR--LLQPLVHVSGRFSAERHFLSVAL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L DP L +R L +++ E +P+ I +NR
Sbjct: 239 PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLN-CAFKNIKCASSILNNTYIWK----KIFLDYKINNSD 661
P V++ L VL + R +L+ C K A + + +W ++ + + SD
Sbjct: 299 P-VVAPLSVLRAEDRQRTGIELDECQQK----AELLRQHQTVWADKLTALYGEESFSASD 353
Query: 662 LELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
+ +++LY+ FI +D LR P++L+ + F++ +L+EL F YRARNF ET
Sbjct: 354 ---DPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPET 410
Query: 722 LSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALL 774
L+ E ++W+ + +R +++ Y E+ L+ + L A+L
Sbjct: 411 LNVAERQQWESFCRNRLSHEE---YGAPNTLPAFEAALEACRQEQGGTLPAVL 460
>gi|313106840|ref|ZP_07793049.1| exodeoxyribonuclease I [Pseudomonas aeruginosa 39016]
gi|386064240|ref|YP_005979544.1| exonuclease I [Pseudomonas aeruginosa NCGM2.S1]
gi|416857472|ref|ZP_11912764.1| exonuclease I [Pseudomonas aeruginosa 138244]
gi|424944921|ref|ZP_18360684.1| exodeoxyribonuclease I [Pseudomonas aeruginosa NCMG1179]
gi|451986860|ref|ZP_21935027.1| Exodeoxyribonuclease I [Pseudomonas aeruginosa 18A]
gi|310879551|gb|EFQ38145.1| exodeoxyribonuclease I [Pseudomonas aeruginosa 39016]
gi|334840633|gb|EGM19282.1| exonuclease I [Pseudomonas aeruginosa 138244]
gi|346061367|dbj|GAA21250.1| exodeoxyribonuclease I [Pseudomonas aeruginosa NCMG1179]
gi|348032799|dbj|BAK88159.1| exonuclease I [Pseudomonas aeruginosa NCGM2.S1]
gi|451755537|emb|CCQ87550.1| Exodeoxyribonuclease I [Pseudomonas aeruginosa 18A]
gi|453046348|gb|EME94065.1| exonuclease I [Pseudomonas aeruginosa PA21_ST175]
Length = 478
Score = 338 bits (868), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 175/473 (36%), Positives = 268/473 (56%), Gaps = 22/473 (4%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
N++ WYDYET G++ RRDRP Q A IRTD LN I P+ LYC+P+ D LP P ACLIT
Sbjct: 2 NASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLIT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G+ E F + + +P T GYN++ FDDE+TR+ +RN +PY RE
Sbjct: 62 GITPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI++++ Y L P GI WP + +G+ S KLE L+ N L H +AHDALSDV
Sbjct: 122 WQGGNSRWDLIDMVRTAYALRPEGIQWP-QLDGRLSLKLEMLTAANGLEHGQAHDALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR PRL++++ LR K VL ++ + +P +++ FS++ ++S++
Sbjct: 181 RATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVR--LLQPLVHVSGRFSAERHFLSVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L DP L +R L +++ E +P+ I +NR
Sbjct: 239 PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDL-NCAFKNIKCASSILNNTYIWK----KIFLDYKINNSD 661
P V++ L VL + R +L C K A + + +W ++ + + SD
Sbjct: 299 P-VVAPLSVLRAEDRQRTGIELEECQRK----AELLRQHQTVWADKLTALYGEESFSASD 353
Query: 662 LELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
+ +++LY+ FI +D LR P++L+ + F++ +L+EL F YRARNF ET
Sbjct: 354 ---DPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPET 410
Query: 722 LSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALL 774
L+ E ++W+ + +R +++ Y E+ L+ + L A+L
Sbjct: 411 LNVAERQQWESFCRNRLSHEE---YGAPNTLPAFEAALEACRQEQGGTLPAVL 460
>gi|359299999|ref|ZP_09185838.1| exonuclease I [Haemophilus [parainfluenzae] CCUG 13788]
Length = 513
Score = 338 bits (868), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 179/474 (37%), Positives = 268/474 (56%), Gaps = 17/474 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F +YDYE+FG+N DRP QFA IRTD N I P+M YCK PD+LP P A ++T I
Sbjct: 5 SFFFYDYESFGVNPATDRPAQFAGIRTDYQFNIIGEPVMFYCKQTPDYLPTPEAVMVTGI 64
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C GI E +FA+ I + F +P T +GYN I +DDE+TR+ F+RN +PYE WK
Sbjct: 65 TPQLCNQEGISEPEFAARIHEQFSQPNTCIIGYNNIRYDDEMTRYTFFRNFFDPYEYSWK 124
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
SRWDL++V++A Y L P GI W + NG PSFKL+ L+ N ++H+ AHDA+SDV A
Sbjct: 125 QGNSRWDLLDVVRACYALRPEGIEWVHDENGLPSFKLDQLTKANGIAHENAHDAMSDVYA 184
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF+F + R KK I P +++ MF + S IS + P+
Sbjct: 185 TIAMAKLIQTKQPKLFDFFFTHRGKKETEKLIDTAEMTPLVHVSGMFGNARSNISWIAPL 244
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L D + L + +R+ L K+ + E +P+ +H+N+ PI
Sbjct: 245 AWHPTNQNEVICCDLTGDIQPLLTESADVLRERLYTKREALAEGVNPVPLKGVHINKCPI 304
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL--NI 666
++ KVL R D N+K + N + I +K+ D + + N+
Sbjct: 305 -LAPAKVLLPENAERLGIDREACLANLKQLKA--NKSLIREKV-TDIFTQTREFSVSDNV 360
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+ LY F S D +AILRS+ P++L++ F ++++E L+F YRAR+F ETLS E
Sbjct: 361 ETTLYQGFFSAADKNNMAILRSLKPEELAHHGLKFADERVEPLLFHYRARHFPETLSRAE 420
Query: 727 LKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK--ILNALLMYGK 778
+W+KY + K + F + +L + E K +L +L Y +
Sbjct: 421 QIKWQKYCHQKIDEKTES------FASSLATLFTQYQEQPEKLALLESLAAYAE 468
>gi|388258690|ref|ZP_10135865.1| exonuclease I [Cellvibrio sp. BR]
gi|387937449|gb|EIK44005.1| exonuclease I [Cellvibrio sp. BR]
Length = 487
Score = 338 bits (868), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 171/475 (36%), Positives = 275/475 (57%), Gaps = 9/475 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+ W+DYET+G DRP QFA +RTD LN ID P+M+YC+PAPD LP P ACLIT +
Sbjct: 8 SLYWHDYETWGEVPAIDRPSQFAGVRTDESLNVIDEPLMIYCQPAPDVLPKPEACLITGL 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
PQ + G+PE +F + I + +PGT VGYN+I FDDE+TR+ +RN +PYEREW+
Sbjct: 68 LPQVAQSKGLPECEFIAAIHRQLARPGTCGVGYNSIRFDDEVTRYTLYRNFYDPYEREWR 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD+I++++ L P GI WP +G+P FKLE LS NNL H+ AHDALSDV A
Sbjct: 128 NGNSRWDIIDMVRMTRALRPEGIEWPNYEDGRPCFKLEMLSQANNLKHEAAHDALSDVYA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+L+++ LR K++ + I A+P +I+ F ++ +L+ P+
Sbjct: 188 TIAVAKLIKTRQPKLYDYAYRLRDKRFAASMIDIDAAKPLLHISSRFPGENGNAALIVPL 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLNRSPI 608
+HP NKN +I +NL DP+ L + +++ L + E + + +H+N++P+
Sbjct: 248 AMHPTNKNSVIAYNLSADPQALLSLPVEELQLRLYTRTEDLPEGVERLALKEVHMNKTPM 307
Query: 609 VISNLKVLSSNLMFRYKFD-LNC-AFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNI 666
++ +L R D C A + ++ + ++++ Y N+ + +
Sbjct: 308 LLP-AAMLDDATAQRLHIDKQRCEAHWQVLRNLTLSERESLLQRLYQLYSSNSFAEKTDP 366
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
++ LY+ F D + +R+ P+ L+N F F + +L E++F YRARNF +LS +E
Sbjct: 367 EQLLYSGFFDDHDKRLMTRVRNADPETLANTAFPFNDPRLGEILFRYRARNFPASLSAEE 426
Query: 727 LKRWKKYRISRFYN-KKNNLYNINMFYLEIESL--LKKANEHDTKILNALLMYGK 778
L+RW+++ R + + + + F L I++L + + +L L YGK
Sbjct: 427 LQRWQEFCRWRLTSPEAQSSLTLMEFDLRIKTLSEAESTSAEQRLLLQQLAAYGK 481
>gi|296391019|ref|ZP_06880494.1| exonuclease I [Pseudomonas aeruginosa PAb1]
Length = 480
Score = 338 bits (868), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 175/473 (36%), Positives = 268/473 (56%), Gaps = 22/473 (4%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
N++ WYDYET G++ RRDRP Q A IRTD LN I P+ LYC+P+ D LP P ACLIT
Sbjct: 4 NASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLIT 63
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G+ E F + + +P T GYN++ FDDE+TR+ +RN +PY RE
Sbjct: 64 GITPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYARE 123
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI++++ Y L P GI WP + +G+ S KLE L+ N L H +AHDALSDV
Sbjct: 124 WQGGNSRWDLIDMVRTAYALRPEGIQWP-QLDGRLSLKLEMLTAANGLEHGQAHDALSDV 182
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR PRL++++ LR K VL ++ + +P +++ FS++ ++S++
Sbjct: 183 RATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVR--LLQPLVHVSGRFSAERHFLSVVL 240
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L DP L +R L +++ E +P+ I +NR
Sbjct: 241 PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRC 300
Query: 607 PIVISNLKVLSSNLMFRYKFDL-NCAFKNIKCASSILNNTYIWK----KIFLDYKINNSD 661
P V++ L VL + R +L C K A + + +W ++ + + SD
Sbjct: 301 P-VVAPLSVLRAEDRQRTGIELEECQRK----AELLRQHQTVWADKLTALYGEESFSASD 355
Query: 662 LELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
+ +++LY+ FI +D LR P++L+ + F++ +L+EL F YRARNF ET
Sbjct: 356 ---DPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPET 412
Query: 722 LSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALL 774
L+ E ++W+ + +R +++ Y E+ L+ + L A+L
Sbjct: 413 LNVDERQQWESFCRNRLSHEE---YGAPNTLPAFEAALEACRQEQGGTLPAVL 462
>gi|116052350|ref|YP_792661.1| exonuclease I [Pseudomonas aeruginosa UCBPP-PA14]
gi|421176458|ref|ZP_15634121.1| exonuclease I [Pseudomonas aeruginosa CI27]
gi|115587571|gb|ABJ13586.1| exodeoxyribonuclease I [Pseudomonas aeruginosa UCBPP-PA14]
gi|404530792|gb|EKA40775.1| exonuclease I [Pseudomonas aeruginosa CI27]
Length = 480
Score = 338 bits (868), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 175/473 (36%), Positives = 267/473 (56%), Gaps = 22/473 (4%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
N++ WYDYET G++ RRDRP Q A IRTD LN I P+ LYC+P+ D LP P ACLIT
Sbjct: 4 NASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLIT 63
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G+ E F + + +P T GYN++ FDDE+TR+ +RN +PY RE
Sbjct: 64 GITPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYARE 123
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI++++ Y L P GI WP + +G+ S KLE L+ N L H +AHDALSDV
Sbjct: 124 WQGGNSRWDLIDMVRTAYALRPEGIQWP-QLDGRLSLKLEMLTAANGLEHGQAHDALSDV 182
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR PRL++++ LR K VL ++ + +P +++ FS++ ++S++
Sbjct: 183 RATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVR--LLQPLVHVSGRFSAERHFLSVVL 240
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L DP L +R L +++ E +P+ I +NR
Sbjct: 241 PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRC 300
Query: 607 PIVISNLKVLSSNLMFRYKFDL-NCAFKNIKCASSILNNTYIWK----KIFLDYKINNSD 661
P V++ L VL R +L C K A + + +W ++ + + SD
Sbjct: 301 P-VVAPLSVLRGEDRQRTGIELEECQRK----AELLRQHQTVWADKLTALYGEESFSASD 355
Query: 662 LELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
+ +++LY+ FI +D LR P++L+ + F++ +L+EL F YRARNF ET
Sbjct: 356 ---DPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPET 412
Query: 722 LSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALL 774
L+ E ++W+ + +R +++ Y E+ L+ + L A+L
Sbjct: 413 LNVAERQQWESFCRNRLSHEE---YGAPNTLPAFEAALEACRQEQGGTLPAVL 462
>gi|416876102|ref|ZP_11919053.1| exonuclease I [Pseudomonas aeruginosa 152504]
gi|334841228|gb|EGM19862.1| exonuclease I [Pseudomonas aeruginosa 152504]
Length = 478
Score = 338 bits (867), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 175/473 (36%), Positives = 268/473 (56%), Gaps = 22/473 (4%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
N++ WYDYET G++ RRDRP Q A IRTD LN I P+ LYC+P+ D LP P ACLIT
Sbjct: 2 NASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLIT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G+ E F + + +P T GYN++ FDDE+TR+ +RN +PY RE
Sbjct: 62 GITPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI++++ Y L P GI WP + +G+ S KLE L+ N L H +AHDALSDV
Sbjct: 122 WQGGNSRWDLIDMVRTAYALRPEGIQWP-QLDGRLSLKLEMLTAANGLEHGQAHDALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR PRL++++ LR K VL ++ + +P +++ FS++ ++S++
Sbjct: 181 RATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVR--LLQPLVHVSGRFSAERHFLSVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L DP L +R L +++ E +P+ I +NR
Sbjct: 239 PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDL-NCAFKNIKCASSILNNTYIWK----KIFLDYKINNSD 661
P V++ L VL + R +L C K A + + +W ++ + + SD
Sbjct: 299 P-VVAPLSVLRAEDRQRTGIELEECQRK----AELLRQHQTVWADKLTALYGEESFSASD 353
Query: 662 LELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
+ +++LY+ FI +D LR P++L+ + F++ +L+EL F YRARNF ET
Sbjct: 354 ---DPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPET 410
Query: 722 LSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALL 774
L+ E ++W+ + +R +++ Y E+ L+ + L A+L
Sbjct: 411 LNVDERQQWESFCRNRLSHEE---YGAPNTLPAFEAALEACRQEQGGTLPAVL 460
>gi|254244874|ref|ZP_04938196.1| exodeoxyribonuclease I [Pseudomonas aeruginosa 2192]
gi|126198252|gb|EAZ62315.1| exodeoxyribonuclease I [Pseudomonas aeruginosa 2192]
Length = 480
Score = 338 bits (867), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 175/473 (36%), Positives = 268/473 (56%), Gaps = 22/473 (4%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
N++ WYDYET G++ RRDRP Q A IRTD LN I P+ LYC+P+ D LP P ACLIT
Sbjct: 4 NASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLIT 63
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G+ E F + + +P T GYN++ FDDE+TR+ +RN +PY RE
Sbjct: 64 GITPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYARE 123
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI++++ Y L P GI WP + +G+ S KLE L+ N L H +AHDALSDV
Sbjct: 124 WQGGNSRWDLIDMVRTAYALRPEGIQWP-QLDGRLSLKLEMLTAANGLEHGQAHDALSDV 182
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR PRL++++ LR K VL ++ + +P +++ FS++ ++S++
Sbjct: 183 RATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVR--LLQPLVHVSGRFSAERHFLSVVL 240
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L DP L +R L +++ E +P+ I +NR
Sbjct: 241 PLVWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRC 300
Query: 607 PIVISNLKVLSSNLMFRYKFDL-NCAFKNIKCASSILNNTYIWK----KIFLDYKINNSD 661
P V++ L VL + R +L C K A + + +W ++ + + SD
Sbjct: 301 P-VVAPLSVLRAEDRQRTGIELEECQRK----AELLRQHQTVWADKLTALYGEESFSASD 355
Query: 662 LELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
+ +++LY+ FI +D LR P++L+ + F++ +L+EL F YRARNF ET
Sbjct: 356 ---DPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPET 412
Query: 722 LSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALL 774
L+ E ++W+ + +R +++ Y E+ L+ + L A+L
Sbjct: 413 LNVAERQQWESFCRNRLSHEE---YGAPNTLPAFEAALEACRQEQGGTLPAVL 462
>gi|399521636|ref|ZP_10762376.1| exodeoxyribonuclease I [Pseudomonas pseudoalcaligenes CECT 5344]
gi|399110874|emb|CCH38936.1| exodeoxyribonuclease I [Pseudomonas pseudoalcaligenes CECT 5344]
Length = 482
Score = 338 bits (867), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 171/475 (36%), Positives = 267/475 (56%), Gaps = 13/475 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ WYDYET G+N R DRP Q A IRTD LN I P+ +YC+P+ D LP P ACL+T
Sbjct: 2 TSSIFWYDYETTGINPRCDRPLQVAGIRTDEALNEIGEPLNIYCRPSDDILPHPAACLVT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
I PQ G+ E +F + + PGT GYN++ FDDE+TR+ +RN +PY RE
Sbjct: 62 GIDPQRLQQQGLDEGEFMTRVHAALSAPGTCGAGYNSLRFDDEVTRYSLYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI++++ Y L P GI WP + G+ S KLE L+ N + H +AHDALSDV
Sbjct: 122 WQGGNSRWDLIDLVRTAYALRPEGIEWP-EEEGRVSLKLERLTQANGIDHGQAHDALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+GLARL+R +L++F+ LR K+ V+ ++ + +P +++ FS+ Y++ +
Sbjct: 181 RATIGLARLLRERQTKLYDFLYQLRSKQRVMDQVR--LLQPVLHVSGRFSAARHYLAPVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L DP L D + +R L ++ + E +P+ ++H+NR
Sbjct: 239 PLAWHPRNRNALIVCDLQADPSPLLNLDADTLRSRLYTRREALAEGELPVPLKLLHINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIW-KKIFLDYKINNSDLELN 665
P V++ L VL R + D + ++I + N +W K+ Y+ +
Sbjct: 299 P-VVAPLSVLREADRQRLQLDWSVCQRHIDV---LKNEQPLWLGKLASVYREEAFAGSHD 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLS-NVNFCFENKKLEELIFLYRARNFIETLSY 724
+++LY+ FI +D +R+ P L+ N + F++ +L EL+F YRARNF +LS
Sbjct: 355 PEQQLYDGFIGDRDRRLCEQVRAAQPDALANNKKWPFDDARLPELLFRYRARNFPASLSV 414
Query: 725 KELKRWKKYRISRFYNKKNNLYN-INMFYLEIESLLKKANEHDTKILNALLMYGK 778
E +RW+ + R + + N + FY +ESL + ++L + +
Sbjct: 415 AESQRWEAFCRQRLSDPEFGAPNTLAQFYAAMESLRANCSPEQLQVLQQWQAHAQ 469
>gi|392985877|ref|YP_006484464.1| exonuclease I [Pseudomonas aeruginosa DK2]
gi|419751860|ref|ZP_14278269.1| exonuclease I [Pseudomonas aeruginosa PADK2_CF510]
gi|384401437|gb|EIE47791.1| exonuclease I [Pseudomonas aeruginosa PADK2_CF510]
gi|392321382|gb|AFM66762.1| exonuclease I [Pseudomonas aeruginosa DK2]
Length = 478
Score = 338 bits (867), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 175/473 (36%), Positives = 267/473 (56%), Gaps = 22/473 (4%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
N++ WYDYET G++ RRDRP Q A IRTD LN I P+ LYC+P+ D LP P ACLIT
Sbjct: 2 NASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLIT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G+ E F + + +P T GYN++ FDDE+TR+ +RN +PY RE
Sbjct: 62 GITPQRLAERGLSEADFMTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI++++ Y L P GI WP + +G+ S KLE L+ N L H +AHDALSDV
Sbjct: 122 WQGGNSRWDLIDMVRTAYALRPEGIQWP-QLDGRLSLKLEMLTAANGLEHGQAHDALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR PRL++++ LR K VL ++ + +P +++ FS++ ++S+
Sbjct: 181 RATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVR--LLQPLVHVSGRFSAERHFLSVAL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L DP L +R L +++ E +P+ I +NR
Sbjct: 239 PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDL-NCAFKNIKCASSILNNTYIWK----KIFLDYKINNSD 661
P V++ L VL + R +L C K A + + +W ++ + + SD
Sbjct: 299 P-VVAPLSVLRAEDRQRTGIELEECQRK----AELLRQHQTVWADKLTALYGEESFSASD 353
Query: 662 LELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
+ +++LY+ FI +D LR P++L+ + F++ +L+EL F YRARNF ET
Sbjct: 354 ---DPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQELFFRYRARNFPET 410
Query: 722 LSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALL 774
L+ E ++W+ + +R +++ Y E+ L+ + L A+L
Sbjct: 411 LNVAERQQWESFCRNRLSHEE---YGAPNTLPAFEAALEACRQEQGGTLPAVL 460
>gi|148549564|ref|YP_001269666.1| exonuclease I [Pseudomonas putida F1]
gi|148513622|gb|ABQ80482.1| Exodeoxyribonuclease I subunit C [Pseudomonas putida F1]
Length = 477
Score = 338 bits (867), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 171/474 (36%), Positives = 263/474 (55%), Gaps = 12/474 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ W+DYET G+N R DRP Q A +RTD LN ID PI LYC+P+ D LP P ACL+T
Sbjct: 2 TSSIFWHDYETTGINPRCDRPLQVAGLRTDFDLNEIDEPISLYCRPSDDILPHPAACLVT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G+ E +F + + +PGT GYNT+ FDDE+TR+ +RN +PY RE
Sbjct: 62 GITPQLLAEQGLCEAEFMTRVHAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI++++ Y L P GI WP + +G+ S +LE LS N + H AH+ALSDV
Sbjct: 122 WQGGNSRWDLIDIVRTAYALRPEGIEWP-QQDGRTSLRLELLSKANGIDHGHAHEALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR P+L++++ LR K V+ +I + +P +I+ FS+ +Y+ ++
Sbjct: 181 RATIALARLIRQKQPKLYDWLFQLRSKHKVMEQIR--LLQPLVHISGRFSAARNYLGVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L + L +R L + + E +P+ ++ +NR
Sbjct: 239 PLAWHPRNRNALIVCDLHQETLPLLRESAEVLRQRLYTRHDELAEGELPVPLKLVQINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELN 665
P V++ L VL R DL + N W+ K+ Y + +
Sbjct: 299 P-VVAPLSVLRPVDQQRLGLDLTLLQSR---GEQLANQQAQWQEKLEHIYGKDEFAPSED 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY FI +D +R++ P +LS+ + F++ +L EL+F YRARNF ETL+ +
Sbjct: 355 PEQQLYEGFIGDRDRRLCEQVRALEPAQLSHGQWMFDDPRLPELLFRYRARNFPETLTPE 414
Query: 726 ELKRWKKYRISRFYNKKNNLYN-INMFYLEIESLLKKANEHDTKILNALLMYGK 778
E +RW + R + N + F + + A+E ++L A ++ +
Sbjct: 415 ERQRWYDFCQQRLSEPQWGAPNTLGDFEQARQQAWEGADEAGRRVLEAWQLHAR 468
>gi|26988099|ref|NP_743524.1| exonuclease I [Pseudomonas putida KT2440]
gi|24982826|gb|AAN66988.1|AE016327_3 exodeoxyribonuclease I [Pseudomonas putida KT2440]
Length = 477
Score = 338 bits (867), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 171/474 (36%), Positives = 263/474 (55%), Gaps = 12/474 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ W+DYET G+N R DRP Q A +RTD LN ID PI LYC+P+ D LP P ACL+T
Sbjct: 2 TSSIFWHDYETTGINPRCDRPLQVAGLRTDFDLNEIDEPISLYCRPSDDILPHPAACLVT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G+ E +F + + +PGT GYNT+ FDDE+TR+ +RN +PY RE
Sbjct: 62 GITPQLLAEQGLCEAEFMTRVHAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI++++ Y L P GI WP + +G+ S +LE LS N + H AH+ALSDV
Sbjct: 122 WQGGNSRWDLIDIVRTAYALRPEGIEWP-QQDGRTSLRLELLSKANGIDHGHAHEALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR P+L++++ LR K V+ +I + +P +I+ FS+ +Y+ ++
Sbjct: 181 RATIALARLIRQKQPKLYDWLFQLRSKHKVMEQIR--LLQPLVHISGRFSAARNYLGVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L + L +R L + + E +P+ ++ +NR
Sbjct: 239 PLAWHPRNRNALIVCDLHQETLPLLRESAEVLRQRLYTRHDELAEGELPVPLKLVQINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELN 665
P V++ L VL R DL + N W+ K+ Y + +
Sbjct: 299 P-VVAPLSVLRPVDQQRLGLDLTLLQSR---GEQLANQQAQWQEKLEHIYGKDEFAPSED 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY FI +D +R++ P +LS+ + F++ +L EL+F YRARNF ETL+ +
Sbjct: 355 PEQQLYEGFIGDRDRRLCEQVRALEPAQLSHGQWMFDDPRLPELLFRYRARNFPETLTGE 414
Query: 726 ELKRWKKYRISRFYNKKNNLYN-INMFYLEIESLLKKANEHDTKILNALLMYGK 778
E +RW + R + N + F + + A+E ++L A ++ +
Sbjct: 415 ERQRWYGFCQQRLSEPQWGAPNTLGDFEKARQQAWEGADEAGRRVLEAWQLHAR 468
>gi|270262717|ref|ZP_06190988.1| exonuclease I [Serratia odorifera 4Rx13]
gi|270043401|gb|EFA16494.1| exonuclease I [Serratia odorifera 4Rx13]
Length = 475
Score = 338 bits (867), Expect = 1e-89, Method: Composition-based stats.
Identities = 174/478 (36%), Positives = 272/478 (56%), Gaps = 23/478 (4%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
+TF +DYETFG + DRP QFA +RTD+ N I+ P+++YCKPA D+LPDP A +IT
Sbjct: 7 ATFYIHDYETFGKSPSMDRPAQFAGVRTDMDFNIIEEPLVIYCKPADDYLPDPEAVMITG 66
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ L GI E FA I + F PGT +GYN I FDDE++R +F+R+ +PY W
Sbjct: 67 ITPQLALAKGINEADFAREIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRSFYDPYAYSW 126
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+N SRWDL++V++A Y L P GI WP +G PSF+LEHL+ N + H+ AHDA+SDV
Sbjct: 127 QNGNSRWDLLDVMRACYALRPEGIVWPENEDGFPSFRLEHLTRANGVEHEHAHDAMSDVY 186
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+F+L R K + A I P +++ MF + S + P
Sbjct: 187 ATIAMAKLVKQAQPRLFDFLLQHRNKHKLNALIDIAEMTPLVHVSGMFGAARGNTSWVSP 246
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP NKN +I +L D L +++R+ L ++ D +PI ++H+N+ P
Sbjct: 247 LAWHPDNKNAVIMCDLAGDMTPLLTLSADELRERLYTRREDLAADQSPVPIKLVHINKCP 306
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL--- 664
++ +L N R D +N++ + N + +K+ + +D E
Sbjct: 307 VLAPAKTLLPENAE-RLGIDRQACLQNLQL---LRQNPQVREKVVALF----ADAEPFKA 358
Query: 665 --NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
++D LY+ F S D + I++ P+ L ++ F + +++EL+F +RARN+ TL
Sbjct: 359 VDDVDARLYDGFFSDADKAAMRIIQQTKPQNLPALDLTFSDGRMKELLFRFRARNYPNTL 418
Query: 723 SYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESL--LKKANEHDTKILNALLMYGK 778
E +RW ++R ++ + + L++ESL L + ++ T +L AL YGK
Sbjct: 419 DDAEQRRWLQHRQEALSAER-----VQSYVLQLESLYNLHEGDKEKTALLKALFEYGK 471
>gi|398966954|ref|ZP_10681720.1| exonuclease I [Pseudomonas sp. GM30]
gi|398145265|gb|EJM34056.1| exonuclease I [Pseudomonas sp. GM30]
Length = 476
Score = 338 bits (867), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 175/471 (37%), Positives = 269/471 (57%), Gaps = 11/471 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ WYDYET G+N R DRP Q A IRTD LN ID P+ LYC+P+ D LP P AC IT
Sbjct: 2 TSIFWYDYETTGINPRNDRPLQVAGIRTDHDLNEIDEPVNLYCQPSEDILPHPAACAITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPSRLAEQGLSEADFMTRVHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+V++A Y L P G+ WP + GK + KLE L+ N++ H AH+ALSDVR
Sbjct: 122 QGGNSRWDLIDVVRAAYALRPEGLVWPTDDQGKVTLKLERLTAANHIDHGHAHEALSDVR 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARLIR P+L++++ LR K+ V+ +I + +P +I+ FS+ Y+ ++ P
Sbjct: 182 ATIALARLIREKQPKLYDWLFQLRSKQKVMDQIR--LLQPLVHISGRFSAARHYVGVVLP 239
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP N+N LI +L DP+ L D +R L +++ E +P+ +IH+NR P
Sbjct: 240 LAWHPRNRNALIVCDLHLDPQGLLDLDAETLRRRLYTRRDDLAEGELPVPLKLIHINRCP 299
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELNI 666
V++ L VL ++ R D+ A + A + + +WK K+ Y + +
Sbjct: 300 -VVAPLSVLRADDQQRLGLDM--ALYQAR-ALRLSDAQQVWKDKVAAIYASEDFTPSEDP 355
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+++LY+ FI +D +R+ P +L+ ++ F++++L EL+F YRARNF +TL+ +E
Sbjct: 356 EQQLYDGFIGDRDRRLCEQVRTADPAQLAQEHWPFDDERLPELLFRYRARNFPDTLNSEE 415
Query: 727 LKRWKKYRISRFYNKKNNLYN-INMFYLEIESLLKKANEHDTKILNALLMY 776
+RW+ + R + N + F + + A ++LN Y
Sbjct: 416 QERWRIFCQQRLSEPQMGAPNTLQSFAEAAQQWVLSATPIQNQVLNEWQNY 466
>gi|71737440|ref|YP_276156.1| exonuclease I [Pseudomonas syringae pv. phaseolicola 1448A]
gi|71557993|gb|AAZ37204.1| exodeoxyribonuclease I [Pseudomonas syringae pv. phaseolicola
1448A]
Length = 476
Score = 338 bits (866), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 168/442 (38%), Positives = 260/442 (58%), Gaps = 11/442 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ WYDYET G+N R DR Q A IRTD LN I P+ L+C+ + D LP P AC+IT
Sbjct: 2 TSSIFWYDYETTGINPRNDRALQMAGIRTDTELNEIAPPVNLHCQLSDDILPHPVACMIT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITP G+ E F + + PGT GYNT+ FDDE+TR+ F+RN +PY RE
Sbjct: 62 GITPATLSEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI+V++A Y L P GI WP + +G+ + KLE L+ N + H +AHDALSDV
Sbjct: 122 WQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR P+L++++ +LR K+ V ++ + +P +I+ FS+ +Y+ ++
Sbjct: 181 RATIALARLIREKQPKLYDYLFALRSKQKVQEQVR--LMQPLVHISGRFSAARNYLGVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L DP L +D ++ L + + E +P+ ++H+NR
Sbjct: 239 PLAWHPHNRNALIVCDLHLDPSPLLQDDAEILKQRLYTRHEALGEGELPVPLKLLHINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELN 665
P VI+ L VL S R + D+ A + A+ + + +W+ K+ + Y + +
Sbjct: 299 P-VIAPLGVLRSEDQQRLQLDM--AGYQAR-ATQLSESREVWQDKLSVLYGKEDFAASED 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY+ FI +D +R P++L+ + F++ +L EL+F YRARNF +TLS +
Sbjct: 355 PEQQLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSSE 414
Query: 726 ELKRWKKYRISRFYNKKNNLYN 747
E +RW+ + R + + N
Sbjct: 415 EQQRWQDFCQQRLSDPERGAPN 436
>gi|422299874|ref|ZP_16387423.1| exodeoxyribonuclease I [Pseudomonas avellanae BPIC 631]
gi|407988089|gb|EKG30719.1| exodeoxyribonuclease I [Pseudomonas avellanae BPIC 631]
Length = 476
Score = 338 bits (866), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 172/437 (39%), Positives = 257/437 (58%), Gaps = 11/437 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ WYDYET G+N R DR Q A IRTD LN I + LYC+P+ D LP P AC+IT
Sbjct: 2 TSSIFWYDYETTGINPRNDRALQMAGIRTDAELNEIAPVVNLYCQPSDDILPHPAACVIT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITP G+ E F + + PGT GYNT+ FDDE+TR+ F+RN +PY RE
Sbjct: 62 GITPATLAEKGLCEADFMTRVHAELAAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI+V++A Y L P GI WP + +G+ + KLE L+ N + H +AHDALSDV
Sbjct: 122 WQGGNSRWDLIDVVRAAYALRPEGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR PRL++++ +LR K+ V I + +P +I+ FS+ SY+ ++
Sbjct: 181 RATIALARLIREKQPRLYDYLFTLRTKQKVQEHIH--LMKPLVHISGRFSAARSYLGVVV 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L D L D ++ L + ++ KE +P+ ++H+NR
Sbjct: 239 PLAWHPHNRNALIVCDLHLDHSPLLQCDAETLKQRLYTRLDALKEGELPVPLKLLHINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELN 665
P VI+ L VL S R K D+ A + A+ + + +W+ K+ + Y ++ +
Sbjct: 299 P-VIAPLGVLRSEDQQRLKLDM--AGYQAR-AAQLSESREVWQDKLQVLYGKDDFVASED 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY+ FI +D +R P++L+ + F++ +L +L+F YRARNF ETLS
Sbjct: 355 PEQQLYDGFIGDRDRRLSEQVRQAEPEQLARDAWPFDDARLPDLLFRYRARNFPETLSTA 414
Query: 726 ELKRWKKYRISRFYNKK 742
E RW+ + R + +
Sbjct: 415 EQHRWQDFCRQRLSSPE 431
>gi|37526737|ref|NP_930081.1| exonuclease I [Photorhabdus luminescens subsp. laumondii TTO1]
gi|36786169|emb|CAE15221.1| exodeoxyribonuclease I (exonuclease I) (DNA
deoxyribophosphodiesterase) [Photorhabdus luminescens
subsp. laumondii TTO1]
Length = 476
Score = 338 bits (866), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 175/472 (37%), Positives = 269/472 (56%), Gaps = 15/472 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF +DYETFG + DRP QFA +RTD+ N I+ P+++YC PA D+LP P A +IT I
Sbjct: 9 TFYIHDYETFGQHPALDRPAQFAGVRTDMDFNIIEEPLVIYCSPADDYLPQPEAVMITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L G+ E +FA I F P + +GYN I FDDE++R +F+RN +PY W+
Sbjct: 69 TPQIALEKGVNEAEFARQIHNAFSVPNSCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
SRWDL++V++A Y L P GI WP G PSFKLEHL+ N + H AHDA+SDV A
Sbjct: 129 KGNSRWDLLDVLRACYALRPEGIIWPENEEGLPSFKLEHLTKANGVEHSHAHDAMSDVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PR+FN+ LR K+ + A I P +P +++ MF + S +SL+ P+
Sbjct: 189 TIAMAKLLKEVQPRMFNYFFQLRNKQKINALIDIPQMKPLVHVSGMFGAARSNLSLVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L D L D + +R+ L + + + D +PI ++H+N+ PI
Sbjct: 249 AWHPANQNAVIVCDLAGDISPLLELDADALRERLYTRHDELQPDQPPVPIKLVHINKCPI 308
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL-NID 667
V + L + R D + +N+ + + NN I +K+ + E N+D
Sbjct: 309 VAPD-NTLRTEDAERIGLDRDYCGRNL---AILQNNPQIREKVVELFAEAEPFPESNNVD 364
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LY+ F S D + I+R P+ L ++ F++ +++ L+F YRARN+ TL+Y E
Sbjct: 365 TKLYDGFFSSADKAAMNIIRETLPQNLPALDLTFQDSRIKTLLFRYRARNYPTTLTYDEQ 424
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLK--KANEHDTKILNALLMYG 777
+ W ++R F K ++ ++ IE L + NE + L AL+ Y
Sbjct: 425 QHWLRHRQEIFTQDK-----LSEYFFIIEQLFTEYQGNEEKCRQLKALMEYA 471
>gi|425072940|ref|ZP_18476046.1| hypothetical protein HMPREF1310_02379 [Proteus mirabilis WGLW4]
gi|404596714|gb|EKA97234.1| hypothetical protein HMPREF1310_02379 [Proteus mirabilis WGLW4]
Length = 476
Score = 338 bits (866), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 178/471 (37%), Positives = 266/471 (56%), Gaps = 11/471 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF +DYETFG + DRP QFA +RTD+ N I++P+++YCKP D+LP P A +IT I
Sbjct: 9 TFYIHDYETFGTHPAMDRPAQFAGVRTDMDFNIIEDPLVIYCKPNDDYLPQPEAVMITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L NG+ E +F I + F +P + +GYN + FDDE+TR + +RN +PY W+
Sbjct: 69 TPQIALKNGVSEAEFTRQIHQAFSQPNSCIMGYNNLRFDDEVTRNILYRNFYDPYAYSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
SRWDL++V++A Y L P GI WP ++G PSF+LE L+ N +SH+ AHDA+SDV A
Sbjct: 129 KGNSRWDLLDVLRACYALRPEGINWPENDDGFPSFRLELLTKANGISHENAHDAMSDVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+ ++ PR+F++ +LR K+ V A I P P +++ MF + S +SL+ P+
Sbjct: 189 TIAMAKKLKQAQPRMFDYFFNLRDKRKVQALIDIPTMTPLVHVSGMFGAARSNLSLIAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L D L ++R+ L ++ D +PI ++H+N+ PI
Sbjct: 249 AWHPDNRNAVIVCDLAADISPLLTLTSEQLRERLYTPRSELSADEPPVPIKLLHINKCPI 308
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL-NID 667
V L S R D++ N + +L+N I K+ + ++D
Sbjct: 309 VAPK-NTLRSQDADRIGLDIDNCLNN---QAILLSNPEIRNKVVEIFAQQTPFTPADDVD 364
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LYN F S D + I+RS P+ L +N FE+ ++E L F YRARNF TL+Y E
Sbjct: 365 AQLYNGFFSDNDRSAMEIIRSTQPQNLPALNLTFEDPRMEPLFFRYRARNFPATLTYDEQ 424
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGK 778
+RW +R + +K Y IN L E NE K L L +Y +
Sbjct: 425 QRWLAHRKEQLTPEKLTEY-INTIQLLAEE--HSDNEEKLKQLQELYLYAQ 472
>gi|157371451|ref|YP_001479440.1| exonuclease I [Serratia proteamaculans 568]
gi|157323215|gb|ABV42312.1| Exodeoxyribonuclease I [Serratia proteamaculans 568]
Length = 475
Score = 338 bits (866), Expect = 2e-89, Method: Composition-based stats.
Identities = 173/477 (36%), Positives = 273/477 (57%), Gaps = 21/477 (4%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
+TF +DYETFG++ DRP QFA +RTD+ N I+ P+++YC PA D+LPDP A +IT
Sbjct: 7 ATFYIHDYETFGISPSMDRPAQFAGVRTDMDFNIIEEPLVIYCTPADDYLPDPEAVMITG 66
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ L G+ E +F I + F PGT +GYN I FDDE++R +F+RN +PY W
Sbjct: 67 ITPQLALAKGVNEAEFTRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSW 126
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+N SRWDL++V++A Y L P GI WP +G PSF+LEHL+ N + H+ AHDA+SDV
Sbjct: 127 QNGNSRWDLLDVMRACYALRPDGIVWPENEDGFPSFRLEHLTRANGVEHEHAHDAMSDVY 186
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+F+L R K + A I P +++ MF + S + P
Sbjct: 187 ATIAMAKLVKQAQPRLFDFLLQHRNKHKLNALIDIAEMTPLVHVSGMFGAARGNTSWVSP 246
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSF---KEDIPISMIHLNRSP 607
+ HP NKN +I +L D L +++R+ L ++ + +PI ++H+N+ P
Sbjct: 247 LAWHPDNKNAVIMCDLAGDMTPLLTLSADELRERLYTRREDLAPGQSPVPIKLVHINKCP 306
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKI---FLDYK-INNSDLE 663
++ +L N R D +N++ + + + +K+ F D + SD
Sbjct: 307 VLAPAKTLLPENAE-RLGIDRQACLQNLQL---LRQHPQVREKVVALFADAEPFKGSD-- 360
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
++D LY+ F S D + I++ P+ L ++ F + +L+EL+F +RARN+ TL
Sbjct: 361 -DVDARLYDGFFSDADKATMKIIQQTKPQNLPALDLTFNDGRLKELLFRFRARNYPNTLD 419
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESL--LKKANEHDTKILNALLMYGK 778
E +RW ++R ++ + + L++ESL L + ++ T +L AL YGK
Sbjct: 420 DTEQRRWLQHRQEALSAER-----VQSYVLQLESLYNLHEGDQEKTALLKALFEYGK 471
>gi|157962308|ref|YP_001502342.1| exonuclease I [Shewanella pealeana ATCC 700345]
gi|157847308|gb|ABV87807.1| Exodeoxyribonuclease I [Shewanella pealeana ATCC 700345]
Length = 470
Score = 337 bits (865), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 175/475 (36%), Positives = 277/475 (58%), Gaps = 18/475 (3%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
N T W+DYETFG N +DRP QFA +RTD+ LN I P YCK A D+LP P A L
Sbjct: 4 NNQPTLFWHDYETFGANPAKDRPSQFAGVRTDMDLNIIGEPETFYCKLANDYLPSPEAIL 63
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
IT ITPQ G+PE +F I +F +P T VGYN++ FDDE++R+ F+RN I+PY
Sbjct: 64 ITGITPQLANLKGMPEAEFMDKINSLFSQPKTCVVGYNSLRFDDEVSRYGFYRNFIDPYA 123
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
REW+N SRWD+I++++A Y P GI WP K +G PSFKLE L+ N LSH+KAHDA+S
Sbjct: 124 REWQNGNSRWDIIDLVRACYAFRPEGINWPEKEDGSPSFKLEQLTVANGLSHEKAHDAMS 183
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ +A+LI++ P+LF++ SLR K+ V I +P +++ S+ + ++
Sbjct: 184 DVYATIDMAKLIKSVQPKLFDYYFSLRLKQQVSKLIDVLEMKPLVHVSSKISALNGCTTI 243
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED-IPISM--IHLN 604
+ P+ H NKN +I NL D + + +IR+ + +++ D +PI + IH+N
Sbjct: 244 IAPVAYHSTNKNAVICVNLAMDVTPLIELSVEEIRERMYTRRSDLAPDELPIGLKQIHIN 303
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL 664
+SP + + + N + D + AF + + + + +K+ + + + +
Sbjct: 304 KSPFIAAANTLTDENAA---RLDFDKAFARAQ-YKKLKQHPELREKLVAVFDVEHEGKTV 359
Query: 665 NIDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
+ D+ LY+ F S D K+ I+R P+ L+ + F++++L E++F YRARN+ ETL
Sbjct: 360 DPDQALYSGGFFSSADKAKIEIIRHTQPRNLAALELDFDDQRLSEMLFRYRARNYPETLD 419
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDT--KILNALLMY 776
E RW+++ +R N + + +E+LL++ + ++ K+L AL Y
Sbjct: 420 DSEQYRWREFCQTRL--------NDPDYIIRLENLLEETEQDESKQKLLQALCHY 466
>gi|114562814|ref|YP_750327.1| exonuclease I [Shewanella frigidimarina NCIMB 400]
gi|114334107|gb|ABI71489.1| Exodeoxyribonuclease I subunit C [Shewanella frigidimarina NCIMB
400]
Length = 473
Score = 337 bits (865), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 180/478 (37%), Positives = 276/478 (57%), Gaps = 21/478 (4%)
Query: 307 HNGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRAC 366
H + W+DYETFG N +DRP QFA IRTD+ LN I P YCK APD+LP P A
Sbjct: 5 HEETPSLYWHDYETFGANPSKDRPSQFAGIRTDLELNIIGEPETFYCKLAPDYLPSPEAI 64
Query: 367 LITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPY 426
LIT ITPQ G+PE +F I +F +P T VGYN++ FDDE++R+ F+RN I+PY
Sbjct: 65 LITGITPQLANLKGVPEAEFMKRINTLFSQPNTCVVGYNSLRFDDEVSRYGFYRNFIDPY 124
Query: 427 EREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDAL 486
REW+N SRWD+I++++A Y P GI WP K +G PSFKLE L+ N LSH+KAHDA+
Sbjct: 125 GREWQNGNSRWDIIDLVRACYAFRPDGINWPKKEDGSPSFKLELLTQANGLSHEKAHDAM 184
Query: 487 SDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYIS 546
SDV AT+ +A+LI+ +P+L+ + +LR+K+ V I +P +++ S+ +
Sbjct: 185 SDVYATIAMAKLIKQTHPKLYEYYFNLRRKQAVADHIDVLKMQPLVHVSSKISALQGCTT 244
Query: 547 LMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHL 603
L+ P+ HP NKN +I NL D L +I D + + + E+ IP+ IHL
Sbjct: 245 LIAPVAYHPTNKNAVICINLAMDISPLLELSAQEINDRMYTSRQNLAENELAIPLKQIHL 304
Query: 604 NRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLE 663
N+ P I + K+L + + +FD A + K + N+ + +K+ +++ SD +
Sbjct: 305 NKCPF-IGSPKLLDDEVAEKLQFDKAFAREQYK---RLKNHPELREKLNQVFEL-ESDRK 359
Query: 664 LNIDEELY---NNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIE 720
D +L F S D K+ I+ +P L+ + F++ ++ E++F +RARN+ E
Sbjct: 360 AITDPDLMLYSGGFFSHADKTKIDIICHTAPHNLAALALQFDDPRINEMLFRFRARNYPE 419
Query: 721 TLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKA--NEHDTKILNALLMY 776
TLS E ++W+ + R + + +++E+L+++ NEH K+L AL Y
Sbjct: 420 TLSDSEARKWRDFCQQRLSDAD--------YVIKLENLVEETSENEHKQKLLKALYQY 469
>gi|333928192|ref|YP_004501771.1| exodeoxyribonuclease I [Serratia sp. AS12]
gi|333933145|ref|YP_004506723.1| exodeoxyribonuclease I [Serratia plymuthica AS9]
gi|386330016|ref|YP_006026186.1| Exodeoxyribonuclease I [Serratia sp. AS13]
gi|333474752|gb|AEF46462.1| Exodeoxyribonuclease I [Serratia plymuthica AS9]
gi|333492252|gb|AEF51414.1| Exodeoxyribonuclease I [Serratia sp. AS12]
gi|333962349|gb|AEG29122.1| Exodeoxyribonuclease I [Serratia sp. AS13]
Length = 475
Score = 337 bits (865), Expect = 2e-89, Method: Composition-based stats.
Identities = 173/478 (36%), Positives = 272/478 (56%), Gaps = 23/478 (4%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
+TF +DYETFG + DRP QFA +RTD+ N I+ P+++YCKPA D+LPDP A +IT
Sbjct: 7 ATFYIHDYETFGKSPSMDRPAQFAGVRTDMDFNIIEEPLVIYCKPADDYLPDPEAVMITG 66
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ L G+ E FA I + F PGT +GYN I FDDE++R +F+R+ +PY W
Sbjct: 67 ITPQLALAKGVNEADFAREIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRSFYDPYAYSW 126
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+N SRWDL++V++A Y L P GI WP +G PSF+LEHL+ N + H+ AHDA+SDV
Sbjct: 127 QNGNSRWDLLDVMRACYALRPEGIVWPENEDGFPSFRLEHLTRANGVEHEHAHDAMSDVY 186
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+F+L R K + A I P +++ MF + S + P
Sbjct: 187 ATIAMAKLVKQAQPRLFDFLLQHRNKHKLNALIDIAEMTPLVHVSGMFGAARGNTSWVSP 246
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP NKN +I +L D L +++R+ L ++ D +PI ++H+N+ P
Sbjct: 247 LAWHPDNKNAVIMCDLAGDMTPLLTLSADELRERLYTRREDLAADQSPVPIKLVHINKCP 306
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL--- 664
++ +L N R D +N++ + N + +K+ + +D E
Sbjct: 307 VLAPAKTLLPENAE-RLGIDRQACLQNLQL---LRQNPQVREKVVALF----ADAEPFKA 358
Query: 665 --NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
++D LY+ F S D + I++ P+ L ++ F + +++EL+F +RARN+ TL
Sbjct: 359 VDDVDARLYDGFFSDADKAAMRIIQQTKPQNLPALDLTFSDGRMKELLFRFRARNYPNTL 418
Query: 723 SYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESL--LKKANEHDTKILNALLMYGK 778
E +RW ++R ++ + + L++ESL L + ++ T +L AL YGK
Sbjct: 419 DDAEQRRWLQHRQEALSAER-----VQSYVLQLESLYNLHEGDKEKTALLKALFEYGK 471
>gi|419953297|ref|ZP_14469442.1| exonuclease I [Pseudomonas stutzeri TS44]
gi|387969889|gb|EIK54169.1| exonuclease I [Pseudomonas stutzeri TS44]
Length = 478
Score = 337 bits (865), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 166/467 (35%), Positives = 269/467 (57%), Gaps = 12/467 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+ + WYDYET G++ RRDRP Q A IRT+ L I P+ LYC+PA D LP P ACL+T
Sbjct: 2 SPSIFWYDYETTGISPRRDRPLQVAGIRTNEALEEIGEPLNLYCRPADDILPHPAACLVT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITP G+ E +F + + + PGT GYN + FDDE+TR+ +RN +PY RE
Sbjct: 62 GITPGILQERGLGEAEFITRLHQELALPGTCGAGYNNLRFDDEMTRYSLYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI++++ Y L P GI WP + NG+ + KL+ L+ N L H AHDALSDV
Sbjct: 122 WQGGNSRWDLIDLVRTAYALRPEGIEWP-QENGRVTLKLDRLTVANGLEHLHAHDALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARL+R+ PRL++++ LR+K+ VL +I + +P +++ FS++ Y++++
Sbjct: 181 RATIALARLLRDRQPRLYDYLYQLRRKQAVLDQI--ELLKPLVHVSGRFSAERHYLAVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP+N+N LI +L +P +R+ L +++ +P+ ++H+NR
Sbjct: 239 PLAWHPLNRNALIVCDLQAEPGVLCDESAQTLRERLYTRRDELAAGALPVPLKLVHVNRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIW-KKIFLDYKINNSDLELN 665
P V++ L VL + R + D + ++ A + W K+ Y+ + L+
Sbjct: 299 P-VLAPLSVLREGDLTRLQLD---RAQCLQRARWLCETRETWLPKLAQIYQQEAFEECLD 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY+ F+ ++D +RS+S + + N+ F++ +L EL+F YRARNF ETLS
Sbjct: 355 PEQQLYDGFLGERDRRLCEQVRSLSASECAARNWTFDDPRLAELLFRYRARNFPETLSTA 414
Query: 726 ELKRWKKYRISRFYNKKNNLYN-INMFYLEIESLLKKANEHDTKILN 771
E ++WK + R + + N + F + + A +++L
Sbjct: 415 EREQWKSFCRQRLIDAQYGAPNTLQQFDEGVRQSVATATAAQSEVLE 461
>gi|300723649|ref|YP_003712954.1| exonuclease I [Xenorhabdus nematophila ATCC 19061]
gi|297630171|emb|CBJ90808.1| exonuclease I, 3'-> 5'-specific; deoxyribophosphodiesterase
[Xenorhabdus nematophila ATCC 19061]
Length = 476
Score = 337 bits (865), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 171/477 (35%), Positives = 280/477 (58%), Gaps = 16/477 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+F ++DYETFG + DRP QFA +RTD N I+ P+++YC PA D+LPDP A +IT
Sbjct: 7 QQSFYFHDYETFGKHPALDRPAQFAGVRTDSDFNIIEEPLVVYCAPADDYLPDPEAVMIT 66
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ L G+ E +FA I ++ KP T +GYN I FDDE++R +F+RN +PY
Sbjct: 67 GITPQQALTKGVNEVEFARQIHEVLSKPNTCILGYNNIRFDDEVSRNIFYRNFYDPYAYS 126
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDL++V++A Y L P GI WP ++G PSFKLEHL+ N + H AHDA+SDV
Sbjct: 127 WQKGNSRWDLLDVLRACYALRPEGIIWPENDDGLPSFKLEHLTKANGIEHTHAHDAMSDV 186
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+L++ PRLF++ LR K+ ++ +I P +P +++ MF + S ISL+
Sbjct: 187 YATIAMAKLVKKAQPRLFDYFFQLRNKQKIINQIDIPQMKPLVHVSGMFGALRSNISLIA 246
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N +I +L D L +++++R L +++ + + +PI ++H+N+
Sbjct: 247 PLAWHPTNRNAVIMCDLAGDISPLLEPNVDELRKRLYTRRDELQPNQSPVPIKLVHINKC 306
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL-- 664
PI I+ L R + D N N+ + + N+ I +++ ++ +S E
Sbjct: 307 PI-IAPENTLRPEDAERVELDRNQCEYNL---AILRNHPQIRERVV---ELFSSPEEFPE 359
Query: 665 --NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
N+D +LY+ F D + I+R +P+ L ++ F++++++ L+F YRARN+ TL
Sbjct: 360 SDNVDAKLYSGFFGDADKTAMEIIRKTAPQNLPALDLTFQDERIKALLFRYRARNYPATL 419
Query: 723 SYKELKRWKKYRISRFYNKKNNLY--NINMFYLEIESLLKKANEHDTKILNALLMYG 777
Y E +RW ++R + + Y I ++E +S +K + T + A+ + G
Sbjct: 420 DYDEQQRWLRHRQDILTQESISQYLATIEALFVEYQSDEEKCRQLKTLVEYAVQLAG 476
>gi|326795181|ref|YP_004313001.1| exodeoxyribonuclease I [Marinomonas mediterranea MMB-1]
gi|326545945|gb|ADZ91165.1| Exodeoxyribonuclease I [Marinomonas mediterranea MMB-1]
Length = 482
Score = 337 bits (865), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 168/482 (34%), Positives = 274/482 (56%), Gaps = 10/482 (2%)
Query: 309 GNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLI 368
G S++ W+D+ET G++ +DRP QFA IRTD+ N I +PIMLYCK A D LP+P ACL+
Sbjct: 5 GPSSYFWFDFETTGVDPAKDRPMQFAGIRTDLEFNPIGDPIMLYCKLAEDVLPNPDACLL 64
Query: 369 TKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYER 428
T ITPQ G+ E +F + IEK +PGT ++GYNT+ FDDE+ R+ F+RN I+PY R
Sbjct: 65 TGITPQDANREGLCEAEFMAEIEKELSQPGTCALGYNTLRFDDEVVRYGFYRNFIDPYAR 124
Query: 429 EWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSD 488
EW+N CSRWD+I++++ Y + P GI WP + GK S KLE L+ N L+H++AHDALSD
Sbjct: 125 EWQNKCSRWDVIDLVRMTYAMRPDGIKWPKNDEGKVSLKLELLTKANGLAHEQAHDALSD 184
Query: 489 VRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLM 548
V T+ +A+LIR+ P+LF++ +R K + I +PF +I+ MF + + +
Sbjct: 185 VYGTIAIAKLIRDTQPKLFDYYAKMRHKSELQQFIDPYRMKPFLHISGMFGLDKKFAAFV 244
Query: 549 WPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRS 606
P+ HP NKN +I ++L+ D + + +IR + E +P+ +IHLNR+
Sbjct: 245 APLAPHPSNKNGIIVYDLMEDATPLVTLTVEEIRQRVFSTTEELGELTRLPLKVIHLNRA 304
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNI 666
P V + +++++ R D + N+ S K+F + ++ +
Sbjct: 305 PAVAPATFLKAADVVERLALDGDVCRTNLSILKSTQELVAKLSKVF---EQEERRIDKDP 361
Query: 667 DEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
D LY+ F S++D ++ +RS + L + F++++L E+ Y RN+ + LS +
Sbjct: 362 DTMLYSGGFFSREDKQRMEEIRSTPIEALGEIEMAFDDRRLPEMFMRYLGRNYPDQLSEQ 421
Query: 726 ELKRWKKYRISRFYNKK-NNLYNINMFYLEIESLLKKANEHDTKILNALLMYGKIDGSSC 784
+ + W++YR +R N +++ F+ + L A + + L++ D +
Sbjct: 422 QREEWEEYRQTRLLNADGGGTIHMDAFFARLNEL---AQDEELTASKRLMLQDLSDYAQS 478
Query: 785 IY 786
IY
Sbjct: 479 IY 480
>gi|398865413|ref|ZP_10620931.1| exonuclease I [Pseudomonas sp. GM78]
gi|398243269|gb|EJN28861.1| exonuclease I [Pseudomonas sp. GM78]
Length = 476
Score = 337 bits (864), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 164/425 (38%), Positives = 249/425 (58%), Gaps = 10/425 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ WYDYET G+N R DRP Q A +RTD LN ID P+ L+C P+ D LP P AC IT
Sbjct: 2 TSIFWYDYETTGINPRCDRPLQMAGLRTDFELNEIDEPVNLFCLPSDDILPHPAACAITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP +G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPARLTEDGLSEADFMTRVHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+V++A Y L P G+ WP + G+ + KLE L+ N L H AH+ALSDVR
Sbjct: 122 QGGNSRWDLIDVVRAAYALRPDGLVWPTDDEGRVTLKLERLTAANGLDHGNAHEALSDVR 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARLIR P+L++++ LR K+ VL ++ + +P +++ FS+ +Y+ ++ P
Sbjct: 182 ATIALARLIREKQPKLYDWLFQLRSKQKVLDQVR--LLQPMVHVSGRFSAARNYVGVVLP 239
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP NKN LI +L DP+ L D +R L ++ E +P+ +IH+N+ P
Sbjct: 240 LAWHPRNKNALIVCDLHLDPQGLLDLDAETLRQRLYTRREDLAEGELPVPLKLIHINKCP 299
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELNI 666
V++ L VL R D+ + A + + W+ K+ Y + +
Sbjct: 300 -VVAPLSVLRPEDQLRLGMDVALYQQR---ALRLSDAQQDWQAKVLAIYAREDFSSSEDP 355
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+++LY+ FI +D +R++ P +L+ + F++++L EL+F YRARNF +TLS E
Sbjct: 356 EQQLYDGFIGDRDRRLCEQVRTVDPLQLAQEQWPFDDERLPELLFRYRARNFPDTLSLDE 415
Query: 727 LKRWK 731
+RW+
Sbjct: 416 QERWR 420
>gi|114047972|ref|YP_738522.1| exonuclease I [Shewanella sp. MR-7]
gi|113889414|gb|ABI43465.1| Exodeoxyribonuclease I subunit C [Shewanella sp. MR-7]
Length = 470
Score = 337 bits (864), Expect = 3e-89, Method: Composition-based stats.
Identities = 176/471 (37%), Positives = 272/471 (57%), Gaps = 18/471 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+ W+DYETFG +DRP QFA IRTD+ LN I P YCK + D+LP P A LIT I
Sbjct: 8 SIFWHDYETFGATPAKDRPAQFAGIRTDLDLNIISEPETFYCKQSTDYLPSPEAILITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+PE +F I +F +P T GYN++ FDDE+TR+ F+RN I+PY REW+
Sbjct: 68 TPQLANLKGLPETEFMGRIHALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N +RWD+I++++A Y P GI WP K +G PSFKLEHL+ N LSH+KAHDA+SDV A
Sbjct: 128 NGNTRWDIIDLVRACYAFRPDGIHWPLKEDGSPSFKLEHLTQANGLSHEKAHDAMSDVYA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+L+ + LR+K+ V A+I +P +++ S+ +L+ P+
Sbjct: 188 TIAMAKLIKEKQPKLYQYYFELRRKQAVSAQIDVLNMQPLAHVSSKISALQGCTTLIAPV 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN +I NL D D+ +I+ + + ED IP+ +HLN+ P
Sbjct: 248 AHHPSNKNAIICVNLAMDLSPLFELDVEQIKTRMYTPRAELAEDELPIPVKQVHLNKCPF 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
I++ K+L R D A + K + + + +K+ ++ + D
Sbjct: 308 -ITSAKILDDAQAERLNIDKAFAREQYK---RLKAHPELREKLAQLFEHEGEVTTTDPDL 363
Query: 669 ELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY+ F S D K+ I+R P+ L+ ++ F++ ++ E++F YRARN+ E L+ +E
Sbjct: 364 MLYSGGFFSPADKAKMEIIRHTLPQNLAALDLQFDDGRIPEMLFRYRARNYPELLNDQEA 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLK--KANEHDTKILNALLMY 776
+RW+ + R ++ + L++E+LL+ +A+E+ K+L AL Y
Sbjct: 424 QRWRIFCQQRLSDQD--------YLLKLENLLQDTEADEYKQKLLAALCHY 466
>gi|113970745|ref|YP_734538.1| exonuclease I [Shewanella sp. MR-4]
gi|113885429|gb|ABI39481.1| Exodeoxyribonuclease I subunit C [Shewanella sp. MR-4]
Length = 470
Score = 337 bits (863), Expect = 4e-89, Method: Composition-based stats.
Identities = 176/471 (37%), Positives = 272/471 (57%), Gaps = 18/471 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+ W+DYETFG +DRP QFA IRTD+ LN I P YCK + D+LP P A LIT I
Sbjct: 8 SIFWHDYETFGATPAKDRPAQFAGIRTDLDLNIISEPETFYCKQSTDYLPSPEAILITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+PE +F I +F +P T GYN++ FDDE+TR+ F+RN I+PY REW+
Sbjct: 68 TPQLANLKGLPETEFMGRIHALFSQPNTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N +RWD+I++++A Y P GI WP K +G PSFKLEHL+ N LSH+KAHDA+SDV A
Sbjct: 128 NGNTRWDIIDLVRACYAFRPDGIHWPLKEDGSPSFKLEHLTQANGLSHEKAHDAMSDVYA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+L+ + LR+K+ V A+I +P +++ S+ +L+ P+
Sbjct: 188 TIAMAKLIKEKQPKLYQYYFELRRKQAVSAQIDVLNMQPLAHVSSKISALQGCTTLIAPV 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN +I NL D D+ +I+ + + ED IP+ +HLN+ P
Sbjct: 248 THHPSNKNAIICVNLAMDLSPLFELDVEQIKTRMYTPRAELAEDELPIPVKQVHLNKCPF 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
I++ K+L R D A + K + + + +K+ ++ + D
Sbjct: 308 -ITSAKILDDAQAERLNIDKAFAREQYK---RLKAHPELREKLAQLFEHEGEVTTTDPDL 363
Query: 669 ELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY+ F S D K+ I+R P+ L+ ++ F++ ++ E++F YRARN+ E L+ +E
Sbjct: 364 MLYSGGFFSPADKAKMEIIRHTLPQNLAALDLQFDDGRIPEMLFRYRARNYPELLNDQEA 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLK--KANEHDTKILNALLMY 776
+RW+ + R ++ + L++E+LL+ +A+E+ K+L AL Y
Sbjct: 424 QRWRIFCQQRLSDQD--------YLLKLENLLQDTEADEYKQKLLAALCHY 466
>gi|383317223|ref|YP_005378065.1| exonuclease I [Frateuria aurantia DSM 6220]
gi|379044327|gb|AFC86383.1| exonuclease I [Frateuria aurantia DSM 6220]
Length = 484
Score = 337 bits (863), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 177/484 (36%), Positives = 276/484 (57%), Gaps = 20/484 (4%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
TF W+DYETFG + RRDRP QFA IRTD+ LN I+ P+M Y P D P P ACLIT
Sbjct: 3 EPTFFWHDYETFGADPRRDRPVQFAGIRTDMELNIIEEPVMFYGLPPKDMPPHPEACLIT 62
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
+ITPQ GI E +FA+ +++ +PGT VGYN++ FDDE+TR + +RN +PY RE
Sbjct: 63 RITPQLAAREGIREAEFAARVQEQLGRPGTCGVGYNSLRFDDEVTRQLLYRNFFDPYARE 122
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W++ +RWDLI++++ L P GI WP + +G PSFKLE L+ N L +AHDALSDV
Sbjct: 123 WEHGNARWDLIDLVRMCEALRPDGIQWPSREDGAPSFKLEQLATANALEQAQAHDALSDV 182
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIA-RPFFYITHMFSSKHSYISLM 548
RA +GLA+LIR PRL+++ LR+K+ V + + PIA P +I+ + + ++++
Sbjct: 183 RALIGLAQLIRQRQPRLWDWYYQLRRKQQVQSLLD-PIAMTPLVHISSRYPASRHCLAII 241
Query: 549 WPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLNR 605
P+ HP +I ++L HDP +L D I D + + E I P+ + NR
Sbjct: 242 VPLAEHPSRPGEMIIYDLDHDPDDWLALDAQSIADRVFVARADLPEGIERVPLRTLRSNR 301
Query: 606 SPIVISNLKVLSSNLMFRYKF--DLNCA-FKNIKCASSILNNTYIWKKIFLDYKINNSDL 662
+P ++ + VL + R + D+ A + ++ A +++ + IF + SD
Sbjct: 302 AP-ALAPMSVLRPVDLERLQLNPDIQLAHLEKLRRAPDLVSKV---RDIF----GHASDF 353
Query: 663 ELNIDEE--LYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIE 720
D E LY+ F ++ D L +R+ P+ L+ + F++ + EL+F YRARN+ E
Sbjct: 354 PPAGDPELALYDGFAARADKPLLVKVRTSPPEALAGLASAFKDPRYPELLFRYRARNWPE 413
Query: 721 TLSYKELKRWKKYRISRFYNKKNNL-YNINMFYLEIESLL-KKANEHDTKILNALLMYGK 778
TLS +E RW+ + R + + ++ ++ I SL ++ D +L+ L ++G+
Sbjct: 414 TLSAEETARWRAFLQDRLSGRSPTVELSLAEYFQRIASLREERTAPADQLLLDQLQVWGE 473
Query: 779 IDGS 782
G
Sbjct: 474 SLGE 477
>gi|339056138|ref|ZP_08648672.1| Exodeoxyribonuclease I [gamma proteobacterium IMCC2047]
gi|330720654|gb|EGG98904.1| Exodeoxyribonuclease I [gamma proteobacterium IMCC2047]
Length = 478
Score = 337 bits (863), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 175/476 (36%), Positives = 269/476 (56%), Gaps = 17/476 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F WYD+ETFG + RDRP QFA IRTD N I +P + +CKPA D LP P ACLIT I
Sbjct: 2 SFYWYDFETFGADPFRDRPCQFAGIRTDEQFNIIGDPDVFFCKPADDVLPHPEACLITGI 61
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L G+ E +F + I + F +PGT GYN+I FDDE+TR +RN +PY REW+
Sbjct: 62 TPQQALKEGVSEAEFIARIHEQFAEPGTCVAGYNSIRFDDEVTRNALYRNFYDPYAREWQ 121
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
+ SRWD+I++++ L P GI WP +G PSFKLE L+ N +SH+ AHDALSDV A
Sbjct: 122 HGNSRWDIIDMVRLTRALRPEGINWPEHEDGSPSFKLEQLTAANGISHEAAHDALSDVWA 181
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+LI+ P+L++++ R K+ V ++ +P +I+ MF + +++ P+
Sbjct: 182 TIELAKLIKTKQPKLYDYVYKHRDKRLVDQQLNVVAQKPVLHISSMFPADRGCAAIVVPL 241
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
+NKN + ++L DP+ L +I + + ++ E +PI +H+N+ PI
Sbjct: 242 ARDVVNKNAVYVYDLSVDPEPLLRLSAEQIAERIFTRREDMPEGVERVPIKAVHINKCPI 301
Query: 609 VISNLKVLSSNLMFRYKFDLNCA---FKNIKCASSILNNTYIWKKIFLDYKINNSDLELN 665
V + + V+S+ R DL ++IK A+ I + +F + D +
Sbjct: 302 V-APVNVVSAEAAERLGIDLTACRANLEHIKAAAGIAEKV---QAVFSSREFETPD---D 354
Query: 666 IDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
D+ LY+ F S D + LR M+P++LS F + +L +++F YRARN+ TLS
Sbjct: 355 PDQALYSGGFFSSHDRQLMEELRQMTPEQLSAAKLPFRDARLPDMLFRYRARNYPATLSD 414
Query: 725 KELKRWKKYRISRFYNKK-NNLYNINMFYLEIESLLKKANE--HDTKILNALLMYG 777
E +W+ +R S F ++K + ++ +Y I+ L+ +IL L YG
Sbjct: 415 DERAQWQVFRRSCFDDEKIGSRLTLDSYYQRIDELMNAPQTTLEQKQILIQLQAYG 470
>gi|407789424|ref|ZP_11136525.1| exonuclease I [Gallaecimonas xiamenensis 3-C-1]
gi|407206782|gb|EKE76732.1| exonuclease I [Gallaecimonas xiamenensis 3-C-1]
Length = 471
Score = 337 bits (863), Expect = 4e-89, Method: Composition-based stats.
Identities = 180/474 (37%), Positives = 276/474 (58%), Gaps = 13/474 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ L++D+ETFG + ++DRP QFAAIRTD LN ID+P + + +P D+LP P ACLIT
Sbjct: 3 ASLLFHDFETFGTDPKKDRPCQFAAIRTDEQLNPIDSPKVWFSQPTDDYLPHPMACLITG 62
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ + G+ E +F +I + +P T S+GYNT+ FDDE+TRF +RN +PYEREW
Sbjct: 63 ITPQQAMAKGVAEPEFIRLIHQEMSQPQTCSLGYNTLRFDDEVTRFTLYRNFYDPYEREW 122
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+N SRWDLI++++A Y L P GI WPY +G P FKLE LS N L H +AHDALSDV
Sbjct: 123 QNGNSRWDLIDMVRATYALRPEGIEWPYYEDGSPCFKLEELSKANALVHARAHDALSDVE 182
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+GLA+LIR+ P+L+++ LR+K+ V A I +P + + F + + P
Sbjct: 183 ATIGLAKLIRDRQPKLYDYFFKLRRKQAVTALIDVINLQPLVHTSSRFPGLQGCSTYVVP 242
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP+NKN +I +L D L D +R L + +E +P+ ++HLN+ P
Sbjct: 243 LAWHPVNKNAVIVVDLNGDLAPLLDLDGQALRQRLYTRSADLEEGQSRLPVKLVHLNKCP 302
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
I ++ K L D N +N+ ++ + + K+ + + E + +
Sbjct: 303 I-LAPAKTLGPERADELGIDRNRCRQNL---DTLKAHPELRDKLVELFSDSGDFAEQDAE 358
Query: 668 EELYNNFISKKDNLKLAILRS-MSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
E LY FIS D +A++R+ P +L+ ++ F++ +L L+F YRAR F +TL+ KE
Sbjct: 359 EALYGGFISDADKASMALVRANQDPNRLTQIH--FKDPRLNTLLFRYRARYFAQTLTEKE 416
Query: 727 LKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKA--NEHDTKILNALLMYGK 778
RW++YR + + + + F LE+E L ++ +E IL L +Y +
Sbjct: 417 QLRWRQYR-EEVLVQGSRGFGMQDFMLELEVLAEERADDEKAMAILKQLYLYAQ 469
>gi|388466407|ref|ZP_10140617.1| exodeoxyribonuclease I [Pseudomonas synxantha BG33R]
gi|388009987|gb|EIK71174.1| exodeoxyribonuclease I [Pseudomonas synxantha BG33R]
Length = 475
Score = 336 bits (862), Expect = 5e-89, Method: Composition-based stats.
Identities = 173/472 (36%), Positives = 270/472 (57%), Gaps = 12/472 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ WYDYET G+N R DRP Q A IRTD+ LN + PI LYC+P D LP P AC IT
Sbjct: 2 TSIFWYDYETTGINPRNDRPLQVAGIRTDLELNEVGEPINLYCQPGDDILPHPAACAITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPGVLAQKGLAEADFMTRVHAELAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+V++ Y L P GI WP + +G+ + KLE L+ N + H +AHDALSDVR
Sbjct: 122 QGGNSRWDLIDVMRTAYALRPEGIIWP-EQDGRVTLKLERLTHANGIDHGQAHDALSDVR 180
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARL+R PRL+ ++ LR K+ V+ E+ + +P +I+ FS++ Y+ ++ P
Sbjct: 181 ATIALARLVRQKQPRLYEWLFQLRSKQRVMDEV--RLLQPMVHISGRFSAERHYLGVVLP 238
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP N+N LI +L DP+ L D +R+ L +++ + +P+ ++H+NR P
Sbjct: 239 LAWHPRNRNALIVCDLGLDPQGLLELDAQTLRERLYTRRDELADGELPVPLKLLHINRCP 298
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELNI 666
V++ LKVL + R + D++ A + + +W+ K+ Y + +
Sbjct: 299 -VVAPLKVLRAQDRERLQLDMSTYQAR---ALRLTDAQEVWRDKLAAIYAEEDFASNADP 354
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+++LY+ FI +D +R P +L++ ++ F++ +L EL+F YRARNF ETL+ +E
Sbjct: 355 EQQLYDGFIGDRDRRLCEQVRMAEPAQLAHQSWPFDDHRLPELLFRYRARNFPETLNTEE 414
Query: 727 LKRWKKYRISRFYNKKNNLYNINMFYLEI-ESLLKKANEHDTKILNALLMYG 777
+RW+ + R + + N M + + E L A ++L+ Y
Sbjct: 415 QQRWRLFCQQRLSDPQWGAPNTLMAFKQAREELALSATSFQCQVLDQWQEYA 466
>gi|431931463|ref|YP_007244509.1| exonuclease I [Thioflavicoccus mobilis 8321]
gi|431829766|gb|AGA90879.1| exonuclease I [Thioflavicoccus mobilis 8321]
Length = 478
Score = 336 bits (862), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 165/438 (37%), Positives = 255/438 (58%), Gaps = 10/438 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
TF W+DYET+G + RDRP QFA RTD+ LN ID P++LYC+PA D LP P ACLIT
Sbjct: 3 ETFYWHDYETWGADPWRDRPAQFAGQRTDVDLNPIDEPLVLYCRPATDLLPQPEACLITG 62
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ +G+ E +FA+ IE++ ++PGT GYN++ FDDE+TR + +RNL +PY REW
Sbjct: 63 ITPQLAWRDGLIEAEFAAAIERVLVQPGTCGAGYNSLRFDDEVTRHLLYRNLFDPYAREW 122
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+N SRWDLI+V++A + L P GI WP +++G SF+LE L+ N + H AHDAL+DVR
Sbjct: 123 RNGNSRWDLIDVLRAAHALRPAGIEWPKRDDGTASFRLEDLTAANGIEHGAAHDALADVR 182
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ L R ++ P+LF++ L LR K+ L + RP +++ + ++ I+ + P
Sbjct: 183 ATIALVRRLKQAQPKLFDYALRLRDKRVALRMLA--EGRPLLHVSARYPAERGCIAPVLP 240
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
I HP N N +I ++L DP F + +R+ L D IP+ + +N +P
Sbjct: 241 IAHHPTNANGVIVFDLREDPAAFADLSVEALRERLFTPAAERAGDVAPIPVKTVRVNHAP 300
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
++ L L+ R+ DL+ ++ ++ + +++ Y + D
Sbjct: 301 F-LAPLATLTPEAAERWAADLDRVRRHAGATDAL---KALGERLVQVYGRPMRGPPSDPD 356
Query: 668 EELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
LY+ FI D L LR ++P+ L+ FE+ +L E+++ YRARN+ ETL+ E
Sbjct: 357 LMLYSGGFIGDADRRVLDRLRRLAPEDLAVERPTFEDPRLPEMLWRYRARNWPETLTDAE 416
Query: 727 LKRWKKYRISRFYNKKNN 744
+ W YR++R + +
Sbjct: 417 REDWDAYRLARLADPEAG 434
>gi|397692989|ref|YP_006530869.1| exonuclease I [Pseudomonas putida DOT-T1E]
gi|397329719|gb|AFO46078.1| exonuclease I [Pseudomonas putida DOT-T1E]
Length = 477
Score = 336 bits (862), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 170/474 (35%), Positives = 264/474 (55%), Gaps = 12/474 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ W+DYET G+N R DRP Q A +RTD LN ID PI LYC+P+ D LP P ACL+T
Sbjct: 2 TSSIFWHDYETTGINPRCDRPLQVAGVRTDFDLNEIDEPISLYCRPSDDILPHPAACLVT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
IT Q G+ E +F + + +PGT GYNT+ FDDE+TR+ +RN +PY RE
Sbjct: 62 GITSQLLAEQGLCEAEFMTRVHAQLAQPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI++++ Y L P GI WP + +G+ S +LE LS N + H AH+ALSDV
Sbjct: 122 WQGGNSRWDLIDIVRTAYALRPEGIEWP-QQDGRTSLRLELLSKANGIDHGHAHEALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR P+L++++ LR K V+ +I + +P +I+ FS+ +Y+ ++
Sbjct: 181 RATIALARLIRQKQPKLYDWLFQLRSKHKVMEQIR--LLQPLVHISGRFSAARNYLGVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L + L +R L + + E +P+ ++ +NR
Sbjct: 239 PLAWHPRNRNALIVCDLHQETLPLLRESAEVLRQRLYTRHDELAEGELPVPLKLVQINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELN 665
P V++ L VL R DL + N W+ K+ Y + +
Sbjct: 299 P-VVAPLSVLRPVDQQRLGLDLTLLQSR---GEQLANQQAQWQEKLEHIYGKDEFAPSED 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY FI +D +R++ P +LS+ ++ F++ +L EL+F YRARNF ETL+ +
Sbjct: 355 PEQQLYEGFIGDRDRRLCEQVRALEPAQLSHGHWMFDDPRLPELLFRYRARNFPETLTPE 414
Query: 726 ELKRWKKYRISRFYNKKNNLYN-INMFYLEIESLLKKANEHDTKILNALLMYGK 778
E +RW + R + + N + F + + A+E ++L A ++ +
Sbjct: 415 ERQRWYGFCQQRLSDPQWGAPNTLGDFEQARQQAWEGADEAGRRVLEAWQLHAR 468
>gi|410087395|ref|ZP_11284099.1| Exodeoxyribonuclease I [Morganella morganii SC01]
gi|409766130|gb|EKN50226.1| Exodeoxyribonuclease I [Morganella morganii SC01]
Length = 472
Score = 336 bits (862), Expect = 5e-89, Method: Composition-based stats.
Identities = 172/476 (36%), Positives = 271/476 (56%), Gaps = 17/476 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
++ F ++DYETFG + DRP QFA +RTD N I +P++ YC PA D+LP P A +IT
Sbjct: 3 SAQFFFHDYETFGQDPAGDRPAQFAGVRTDSEFNIIADPVIAYCAPADDYLPQPAAVMIT 62
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ L G+ E +FA +I F +P T +GYN+I FDDE+TR +F+RN +PY
Sbjct: 63 GITPQEALQKGVNEAQFAKLIHDTFTQPDTCILGYNSIRFDDEVTRNIFYRNFYDPYAYS 122
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W N SRWDLI++ +A Y L P G WP + G PSFKLEHL+ N ++H+ AHDA++DV
Sbjct: 123 WMNRNSRWDLIDITRACYALRPDGTNWPENDEGLPSFKLEHLTAANGIAHENAHDAMADV 182
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+ +R PRLF++ +LR K+ + A I P +P +I+ MF + + SL+
Sbjct: 183 YATIAMAKQLRGAQPRLFDYFFTLRDKRKLAALIDIPSMKPLVHISGMFGAVRANTSLVA 242
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N +I +L D L D + +R++L +++ ED +P+ ++H+N+
Sbjct: 243 PLAWHPDNRNAVIMCDLAGDLTPLLTLDADTLREHLYTRRDELPEDASPVPLKLVHINKC 302
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDLELN 665
PI+ L R D + +N A + + I +K+ + + + +
Sbjct: 303 PILAPE-NTLRPQDAQRIGLDKDLCARN---AELLHQHPEIREKVVAVFAQPREFPPQND 358
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +Y F S D + I+R PK L + +++ +L EL+F YRARNF TL
Sbjct: 359 VDRMIYQGFFSDSDKAAMTIIRETDPKNLPALTLSYQDARLPELLFRYRARNFPGTLDEH 418
Query: 726 ELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHD---TKILNALLMYGK 778
E +RW +R F N N+ ++ +I ++++ +HD T++L L+ Y +
Sbjct: 419 EQQRWLAHRREVF-----NQDNLTRYFEQIGEMMQEY-QHDANKTELLKKLVQYAQ 468
>gi|398835989|ref|ZP_10593339.1| DNA polymerase I [Herbaspirillum sp. YR522]
gi|398214311|gb|EJN00893.1| DNA polymerase I [Herbaspirillum sp. YR522]
Length = 917
Score = 336 bits (862), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 155/270 (57%), Positives = 205/270 (75%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRAF+ALPD+RN + P GALYG I MLR+L +Y A+Y+AC+FDAKGK FR+
Sbjct: 8 VDGSSYLYRAFHALPDMRNAEGAPTGALYGIINMLRRLRNDYPASYVACVFDAKGKTFRD 67
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKATRK MP +L LQI IH V+A+GWPIL+++G+EADDVIGTL+ QA T L
Sbjct: 68 DLYADYKATRKAMPDDLALQIEPIHAAVRALGWPILMVEGIEADDVIGTLSVQA-TAAGL 126
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
I+ST DKDMAQLV+ ++ L+N +N+I D + +FGV PE+IVDY SLIGD DN+
Sbjct: 127 DTIVSTGDKDMAQLVNERVTLVNTMSNEILDPKGVNEKFGVPPERIVDYLSLIGDTVDNV 186
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK LN Y SL+ ++ NA I GV+G+NLR AL WLP+ + ++T+KTDCD
Sbjct: 187 PGVEKCGPKTAVKWLNTYGSLDGVMENAAKITGVVGENLRKALGWLPQARVLVTVKTDCD 246
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L+ ++ +I +SL +QP+D +L LF +YN
Sbjct: 247 LSAHMGTILDSLTMQPQDNAVLKDLFARYN 276
>gi|399018904|ref|ZP_10721060.1| 5'-3' exonuclease (including N-terminal domain of PolI), partial
[Herbaspirillum sp. CF444]
gi|398099216|gb|EJL89485.1| 5'-3' exonuclease (including N-terminal domain of PolI), partial
[Herbaspirillum sp. CF444]
Length = 293
Score = 336 bits (861), Expect = 6e-89, Method: Composition-based stats.
Identities = 156/270 (57%), Positives = 208/270 (77%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRAF+ALPD+RN + P GALYG I MLR+L +Y A+YIACIFDAKGK FR+
Sbjct: 8 VDGSSYLYRAFHALPDMRNAEGAPTGALYGIINMLRRLRNDYPASYIACIFDAKGKTFRD 67
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKATRK MP +L LQI IH V+A+GWPIL+++G+EADDVIGTL +A + L
Sbjct: 68 DLYTEYKATRKSMPEDLALQIEPIHAAVRALGWPILMVEGIEADDVIGTLGVRA-AEEGL 126
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
K I+ST DKDMAQLV++ + L+N +N+ DR +I++FGV PE+IVDY SLIGD DN+
Sbjct: 127 KTIVSTGDKDMAQLVNDHVTLVNTMSNETMDRAGVIAKFGVPPERIVDYLSLIGDTVDNV 186
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L QY+SL+ ++ NA+ I GV+G+NLR AL WLP+ + ++T+KTDCD
Sbjct: 187 PGVEKCGPKTAVKWLTQYDSLDGVMANADKITGVVGENLRKALPWLPQARVLVTVKTDCD 246
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L+ ++ +I +SL +QP D L ++F +YN
Sbjct: 247 LSAHMSTILDSLTVQPNDNVALREIFTRYN 276
>gi|197284734|ref|YP_002150606.1| exonuclease I [Proteus mirabilis HI4320]
gi|425067711|ref|ZP_18470827.1| hypothetical protein HMPREF1311_00867 [Proteus mirabilis WGLW6]
gi|194682221|emb|CAR41929.1| exodeoxyribonuclease I [Proteus mirabilis HI4320]
gi|404600911|gb|EKB01336.1| hypothetical protein HMPREF1311_00867 [Proteus mirabilis WGLW6]
Length = 476
Score = 336 bits (861), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 177/471 (37%), Positives = 266/471 (56%), Gaps = 11/471 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF +DYETFG + DRP QFA +RTD+ N I++P+++YCKP D+LP P A +IT I
Sbjct: 9 TFYIHDYETFGTHPAMDRPAQFAGVRTDMDFNIIEDPLVIYCKPNDDYLPQPEAVMITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L +G+ E +F I + F +P + +GYN + FDDE+TR + +RN +PY W+
Sbjct: 69 TPQIALKHGVSEAEFTRQIHQAFSQPNSCIMGYNNLRFDDEVTRNILYRNFYDPYAYSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
SRWDL++V++A Y L P GI WP ++G PSF+LE L+ N +SH+ AHDA+SDV A
Sbjct: 129 KGNSRWDLLDVLRACYALRPEGINWPENDDGFPSFRLELLTKANGISHENAHDAMSDVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+ ++ PR+F++ +LR K+ V A I P P +++ MF + S +SL+ P+
Sbjct: 189 TIAMAKKLKQAQPRMFDYFFNLRDKRKVQALIDIPTMTPLVHVSGMFGAARSNLSLVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L D L ++R+ L ++ D +PI ++H+N+ PI
Sbjct: 249 AWHPDNRNAVIVCDLAADISPLLTLTSEQLRERLYTPRSELSADEPPVPIKLLHINKCPI 308
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL-NID 667
V L S R D++ N + +L+N I K+ + ++D
Sbjct: 309 VAPK-NTLRSQDADRIGLDIDNCLNN---QAILLSNPEIRNKVVEIFAQQTPFTPADDVD 364
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LYN F S D + I+RS P+ L +N FE+ ++E L F YRARNF TL+Y E
Sbjct: 365 AQLYNGFFSDNDRSAMEIIRSTQPQNLPALNLTFEDPRMEPLFFRYRARNFPATLTYDEQ 424
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGK 778
+RW +R + +K Y IN L E NE K L L +Y +
Sbjct: 425 QRWLAHRKEQLTPEKLTEY-INTIQLLAEE--HSDNEEKLKQLQELYLYAQ 472
>gi|90415078|ref|ZP_01223036.1| putative exonuclease I [Photobacterium profundum 3TCK]
gi|90323813|gb|EAS40426.1| putative exonuclease I [Photobacterium profundum 3TCK]
Length = 474
Score = 336 bits (861), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 176/473 (37%), Positives = 266/473 (56%), Gaps = 12/473 (2%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
+ T W DYETFG DR QFA +RTD+ N I P+++YCKP D+LP P ACL
Sbjct: 4 DNTPTLYWIDYETFGATPATDRACQFAGVRTDMDFNIIGEPLVIYCKPPVDYLPSPEACL 63
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
IT ITPQ G+ E +F + I KP T +GYN + FDDE+TR+ +RN +PY
Sbjct: 64 ITGITPQEAQEKGLSEPEFIAQIHAELSKPNTCVIGYNNVRFDDEVTRYTLYRNFYDPYA 123
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
W+N SRWDL+++++ Y L P G+ WP + G PSFKLEHLS N + H AHDA++
Sbjct: 124 WGWQNGNSRWDLLDIMRTCYALRPEGVNWPNNDEGLPSFKLEHLSVANGIEHANAHDAMA 183
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ LA++++ N P+LFN++ LR K+ + + P +++ MF S
Sbjct: 184 DVYATIELAKILKTNQPKLFNYLFDLRHKRKLQELVDIVNLTPLVHVSGMFGVGCGNTSW 243
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
+ P+ HP NKN +IT NL DP + D ++IR+ + K++ K D IP+ ++HLN
Sbjct: 244 IVPMAWHPDNKNAVITVNLAQDPTPLIELDADQIRERMYTKRSELKPDELPIPVKLVHLN 303
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLE- 663
+ P V++ K L + R D KN++ + + I +K+ + + E
Sbjct: 304 KCP-VLAPAKTLKAEDANRIGIDRAQCLKNLQI---LKEHPEIREKLVAIFAVQREYKEN 359
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
++D LY+ F S D + I+R +P+ L+ + E+K+++ L+F YRARNF TL+
Sbjct: 360 TDVDSMLYDGFFSNSDRSSIDIIRESTPEALAEIQLNVEDKRIKPLLFRYRARNFPLTLN 419
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMY 776
Y+E ++W K+ F+ Y N + E+ ++NEH KIL AL Y
Sbjct: 420 YEEQQKW-KHHCQDFFQDNLPAYMENFEAVATEN---QSNEHKMKILKALYDY 468
>gi|416891752|ref|ZP_11923299.1| exodeoxyribonuclease I [Aggregatibacter aphrophilus ATCC 33389]
gi|347815300|gb|EGY31940.1| exodeoxyribonuclease I [Aggregatibacter aphrophilus ATCC 33389]
Length = 475
Score = 336 bits (861), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 182/481 (37%), Positives = 268/481 (55%), Gaps = 22/481 (4%)
Query: 305 LLHNGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPR 364
++ + +F YDYE+FG+N DRP QF IRTD N I P++LYCK D+LP P
Sbjct: 1 MMAKNDFSFFIYDYESFGVNPATDRPAQFGGIRTDANFNIIGEPVVLYCKQTNDYLPAPE 60
Query: 365 ACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLIN 424
A L+T ITPQ C G+PE FA+ I + F +P T +G+N I +DDE+TR+ F+RN I+
Sbjct: 61 AVLVTGITPQECNEKGLPEPDFAARILQEFSQPNTCVMGFNNIRYDDEMTRYTFYRNFID 120
Query: 425 PYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHD 484
PYE WKN SRWDL+++++A Y L P GI WP + G PSF+LE L+ N + H AHD
Sbjct: 121 PYEYSWKNGNSRWDLLDLVRACYALRPDGIEWPLDDEGMPSFRLEKLTEANGIEHTNAHD 180
Query: 485 ALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSY 544
A+SDV AT+ +A+LI+ P+LF + R KK + I P +++ M +
Sbjct: 181 AMSDVYATIEMAKLIKQKQPKLFQYFFENRGKKEIEKLINTAEMTPLVHVSGMLGNYRGN 240
Query: 545 ISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISM 600
+L+ P+ HP NKN +I +L + L ++R+ L KK + E +P+ +
Sbjct: 241 TTLIAPLAWHPTNKNAVIVCDLTANIDDLLTKSAEELREKLYTKKETLLEARVLPVPLKL 300
Query: 601 IHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF----LDYK 656
IH+N+ PIV +LS N R D +N +L + I +K+ D +
Sbjct: 301 IHINKCPIVAPEKTLLSQNAE-RLGIDRELCAQN---QQRLLASKDIRQKVMDIFQQDRE 356
Query: 657 INNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRAR 716
SD N++ ELYN F S D +AILR++ P+KL+ N F++ ++ +L+F YRAR
Sbjct: 357 FEPSD---NVETELYNGFFSDADKNNIAILRTLEPEKLAEHNLSFQDPRIPQLLFHYRAR 413
Query: 717 NFIETLSYKELKRWKKYR-------ISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI 769
+F TL+ E +W+KYR + RF L N E +LL+K E+ KI
Sbjct: 414 HFYRTLNRAEQIKWQKYRQKKLEAEVLRFEQSLQELATQNEHNEEKLTLLRKVYEYGNKI 473
Query: 770 L 770
+
Sbjct: 474 I 474
>gi|398847793|ref|ZP_10604677.1| exonuclease I [Pseudomonas sp. GM84]
gi|398251208|gb|EJN36482.1| exonuclease I [Pseudomonas sp. GM84]
Length = 478
Score = 336 bits (861), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 172/474 (36%), Positives = 266/474 (56%), Gaps = 12/474 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ W+DYET G+N R DRP Q A +RTD+ LN I+ PI LYC+P+ D LP P ACL+T
Sbjct: 2 TSSIFWHDYETTGINPRCDRPLQVAGVRTDLELNEIEPPISLYCRPSDDILPHPAACLVT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G+ E +F + + + +PGT GYNT+ FDDE+TR+ +RN +PY RE
Sbjct: 62 GITPQQLATQGLCEAEFMTRVHEQLARPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI+V++ Y L P GI WP + +G+ S +LE LS N + H AH+ALSDV
Sbjct: 122 WQGGNSRWDLIDVVRTAYALRPEGINWP-QQDGRTSLRLELLSQANGIDHGHAHEALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR PRL+ ++ LR K VL +I + +P +I+ FS+ +Y+ ++
Sbjct: 181 RATIALARLIRQKQPRLYEWLFQLRSKHKVLEQIR--LLQPLVHISGRFSAARNYLGVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L + L +R+ L + E +P+ ++ +NR
Sbjct: 239 PLAWHPRNRNALIVCDLHQETLPLLRESAEVLRERLYTRHEELSEGQLPVPLKLVQINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELN 665
P V++ L VL R DL A + ++ N W+ K+ Y + +
Sbjct: 299 P-VLAPLSVLRPADQQRLGIDL--ALLQTR-GEALANQQAQWQDKLEPIYGKDEFAPNED 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY+ F+ +D +R++ P L ++ F++ ++ EL+F YRARNF ETL+
Sbjct: 355 PEQQLYDGFLGDRDRRLCEQVRTLDPAALGGGHWMFDDPRMPELLFRYRARNFPETLNSD 414
Query: 726 ELKRWKKYRISRFYNKKNNLYN-INMFYLEIESLLKKANEHDTKILNALLMYGK 778
E +RW + R + N + F +S A+E ++L+A ++ +
Sbjct: 415 ERQRWYAFCQQRLSDPLWGAPNTLGDFEQARQSAWANADEAGRRVLDAWQVHAR 468
>gi|441502061|ref|ZP_20984074.1| Exodeoxyribonuclease I [Photobacterium sp. AK15]
gi|441430500|gb|ELR67950.1| Exodeoxyribonuclease I [Photobacterium sp. AK15]
Length = 473
Score = 336 bits (861), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 175/474 (36%), Positives = 265/474 (55%), Gaps = 12/474 (2%)
Query: 307 HNGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRAC 366
H + W DYETFG N DRP QFA +RTD+ LN + P+++YCKP D+LP P AC
Sbjct: 3 HENEPSLFWLDYETFGANPATDRPCQFAGVRTDMDLNIVGEPLVIYCKPPVDYLPSPEAC 62
Query: 367 LITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPY 426
LIT ITPQ G+PE +F + I KP T +GYN + FDDE+TR+ +RN +PY
Sbjct: 63 LITGITPQEAFEKGLPEPEFIAQIHAELSKPNTCVIGYNNVRFDDEVTRYTLYRNFYDPY 122
Query: 427 EREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDAL 486
W+N SRWD++++++ Y L P GI WP + G PSFKLEHLS N + H AHDA+
Sbjct: 123 AWSWQNGNSRWDMLDIMRTCYALRPDGINWPNNDEGLPSFKLEHLSVANGIEHANAHDAM 182
Query: 487 SDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYIS 546
+DV AT+ LA++I+ N P+LFN++ +LR K+ + I P +++ MF + S
Sbjct: 183 ADVYATIELAKIIKKNQPKLFNYLFNLRNKRKLQELIDIVELTPLVHVSGMFGVECGNTS 242
Query: 547 LMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHL 603
+ P+ HP NKN +IT NL DP + D + +R+ L K+ D +P+ ++HL
Sbjct: 243 WIVPVGWHPTNKNAVITVNLAMDPTPLIELDADTLRERLYTKRVDLAPDELPVPVKLVHL 302
Query: 604 NRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DL 662
N+ P V++ K L + R D K+++ S + I +K+ Y +
Sbjct: 303 NKCP-VLAPAKTLKAEDAERIGIDREQCLKHLQILKS---HPEIREKLVALYSAEREYEP 358
Query: 663 ELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
N+D LY+ F S D + I+R + L ++ ++K+++ L+F YRARNF TL
Sbjct: 359 NTNVDAMLYDGFFSNSDRSTIDIIRETQSEDLGKLDLKVDDKRIKPLLFRYRARNFPNTL 418
Query: 723 SYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMY 776
+K+ ++W KY ++ Y M LE ++ +++E KIL A+ Y
Sbjct: 419 DFKDQQQW-KYHCQDYFESNLPAY---MENLEATAMEHQSDEKKMKILKAVYDY 468
>gi|407792824|ref|ZP_11139860.1| exonuclease I [Idiomarina xiamenensis 10-D-4]
gi|407217082|gb|EKE86918.1| exonuclease I [Idiomarina xiamenensis 10-D-4]
Length = 486
Score = 335 bits (860), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 171/479 (35%), Positives = 268/479 (55%), Gaps = 14/479 (2%)
Query: 309 GNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLI 368
++ W+DYET+G+N DRP QFA +RTD+ L I P+ L+ +P DFLP P A LI
Sbjct: 11 ATASLYWHDYETWGVNPLVDRPAQFAGLRTDLSLQPIGKPMTLFNQPTADFLPHPEAALI 70
Query: 369 TKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYER 428
T ITPQ LN G+ E F+ I + F +P T+ VGYN I FDDE+TR +F+RN I+PY
Sbjct: 71 TGITPQQALNQGMNECSFSGKIAEQFTQPQTVIVGYNNIRFDDEVTRALFYRNFIDPYAH 130
Query: 429 EWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSD 488
W+ SRWDLI++++A Y L P GI WP +G+ S KLE L+ N + H +AHDA++D
Sbjct: 131 TWQQGNSRWDLIDLVRACYALRPDGIQWPRHEDGRVSMKLEDLTAANGIDHGQAHDAMAD 190
Query: 489 VRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLM 548
V AT+ +ARLIR P+L+++ +LR KK V +I +P +++ + + Y+S +
Sbjct: 191 VYATIAIARLIREQQPKLWDYAFNLRTKKAVQQQIDLLQRKPLVHVSGHYGAAQGYVSYL 250
Query: 549 WPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED----IPISMIHLN 604
P+ HP N+L+ W+L HDP+ I+++R+ K ++ + + + +N
Sbjct: 251 MPLAYHPQQANVLLGWDLRHDPRAIANLSIDQLRERFYLPKAEREQQQLASVALHKVAIN 310
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIK--CASSILNNTYIWKKIFLDYKINNSDL 662
R P + + VLS + D ++ + A + L I DY D
Sbjct: 311 RCPFIAPS-NVLSDERGAHFGLDKAQCLQHYQQLQADAELRERLIDALSENDYPAPADDP 369
Query: 663 ELNIDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
EL +LY+ +F ++D + ++R P++L+ + F F + +L L+F YRARNF T
Sbjct: 370 EL----QLYSGDFFGEQDKSNMRLIREADPEQLAGMQFNFVDARLPTLLFRYRARNFPAT 425
Query: 722 LSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK--ILNALLMYGK 778
LS +EL+RW+++ R +I + L++E L ++ + K IL AL Y +
Sbjct: 426 LSEQELQRWQRFCQQRLMEPLAGALSIEEYALKLEHLAEQHSGDANKLAILRALYQYAQ 484
>gi|344339416|ref|ZP_08770345.1| Exodeoxyribonuclease I [Thiocapsa marina 5811]
gi|343800720|gb|EGV18665.1| Exodeoxyribonuclease I [Thiocapsa marina 5811]
Length = 484
Score = 335 bits (860), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 166/437 (37%), Positives = 254/437 (58%), Gaps = 17/437 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFLW+DYET+G + RRDRP QFAA+RTD LN I P M +C P+ D LP P ACLIT I
Sbjct: 9 TFLWHDYETWGSDPRRDRPCQFAAVRTDADLNEIGEPSMFFCCPSTDLLPHPEACLITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+ E +FA+ + PGT VGYN+I FDDEITR + +RNL++PY REW+
Sbjct: 69 TPQLAERTGLIEAEFAAAVNAQLSVPGTCGVGYNSIRFDDEITRNLLYRNLLDPYAREWR 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDLI+ ++ + L P G+ WP + +G SFKLEHL+ N + H +AHDAL+DVRA
Sbjct: 129 NGNSRWDLIDALRLAHALRPGGLEWPTREDGTTSFKLEHLTAANGIDHGQAHDALADVRA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LAR +R+ P+LF++ L+LR K+ V + + P + + + + I+ + P+
Sbjct: 189 TIALARRLRHAQPKLFDYALTLRDKRRVRELLDRGV--PLLHASARYPAAQGCIAPVLPL 246
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
C HP+N N +I +L P+ + +++R L S E IP+ IH+NR+P
Sbjct: 247 CAHPLNGNGVICVDLRAPPELLIDLSADELRTRLFSPAKSLPEGVERIPLKTIHVNRAP- 305
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIK----CASSILNNTYIWKKIFLDYKINNSDLEL 664
V++ +K L + R+ D + + CA++I K+ + + E
Sbjct: 306 VLAPMKTLEPDAAARWSIDPGAVAAHARRLRECAAAIE------MKVREVHSAPDGPTET 359
Query: 665 NIDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
+ D +Y+ F S D + + + P +L + F++ +L E++ YRARN+ ETL+
Sbjct: 360 DPDLMIYSGGFFSDADRRAMDGIHRLDPAELGDHAPSFQDPRLGEMLLRYRARNWPETLT 419
Query: 724 YKELKRWKKYRISRFYN 740
+E + W +R++R +
Sbjct: 420 PEEREDWDLFRLARLTD 436
>gi|418295834|ref|ZP_12907680.1| exonuclease I [Pseudomonas stutzeri ATCC 14405 = CCUG 16156]
gi|379067163|gb|EHY79906.1| exonuclease I [Pseudomonas stutzeri ATCC 14405 = CCUG 16156]
Length = 478
Score = 335 bits (860), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 165/476 (34%), Positives = 269/476 (56%), Gaps = 18/476 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ WYD+ET G++ RDRP Q A IRT+ L I P+ +YC+P D LP P ACL+T
Sbjct: 2 TSSIFWYDFETTGVSPSRDRPLQVAGIRTNEALEEIGEPLNIYCRPGDDILPHPAACLVT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITP G+ E +F + + PGT GYN++ FDDE+TR+ +RN +PY RE
Sbjct: 62 GITPATLRQKGLCEAEFIQRLHQQLSMPGTCGAGYNSLRFDDEVTRYSLYRNFYDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI++++ Y L P G+ WP + G+ + KLE LS N L H AHDALSDV
Sbjct: 122 WQGGNSRWDLIDLVRTAYALRPEGLVWP-EEEGRVTLKLERLSVANGLEHLNAHDALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARL+R+ P+L++++ +LR+K+ VL +I + P +++ FS+ ++S++
Sbjct: 181 RATIALARLVRSYQPKLYDYLFNLRRKQAVLEQIN--LLEPLVHVSGRFSAARHFLSVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSF---KEDIPISMIHLNRS 606
P+ HP N+N LI +L + L +R L + + + +P+ +IH+NR
Sbjct: 239 PLAWHPRNRNALIVCDLQAETGPLLQESAETLRRRLYTRHDQLAVGELPVPLKLIHVNRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIW----KKIFLDYKINNSDL 662
P V++ LKVL + + R D++ A+++ + ++W ++ + SD
Sbjct: 299 P-VVAPLKVLRAQDIQRLGVDMSVCLGR---AAALRDQKHVWGGKLDDVYREEGFVGSD- 353
Query: 663 ELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
+ +++LY+ F+ ++D +R+++P +L+ + F++ +LEEL+F YRARNF E L
Sbjct: 354 --DPEQQLYDGFLGERDRRLCDQIRNLTPAELARQQYHFDDARLEELLFRYRARNFPEAL 411
Query: 723 SYKELKRWKKYRISRFYNKKNNLYN-INMFYLEIESLLKKANEHDTKILNALLMYG 777
S +E W ++ R + N + F EI+ + A ++L YG
Sbjct: 412 SVEEKSHWYRFCQQRLSEEACGAPNTLGQFDTEIQRFMATATPAQQQLLQQWHAYG 467
>gi|303252408|ref|ZP_07338574.1| exonuclease I [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
gi|307247643|ref|ZP_07529685.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 2 str.
S1536]
gi|302648867|gb|EFL79057.1| exonuclease I [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
gi|306855855|gb|EFM88016.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 2 str.
S1536]
Length = 514
Score = 335 bits (860), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 170/432 (39%), Positives = 256/432 (59%), Gaps = 11/432 (2%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
N N TF +YDYE+FG++ DRP QFA IRTD N I P+M YCK PD+LP P A +
Sbjct: 2 NKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVM 61
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
+T ITPQ C G+PE +FA+ I F +P T +GYN I +DDE+TR+ F+RN +PYE
Sbjct: 62 VTGITPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYE 121
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
WKN SRWDL+++++A Y L P GI W NG P+FKLE+L+ N ++H+ AHDA++
Sbjct: 122 YSWKNGNSRWDLLDLVRACYALRPDGIEWVIDENGMPNFKLENLTKANGIAHENAHDAMA 181
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ +A+LI+ P+LF F R KK + I P +++ MF + + +
Sbjct: 182 DVYATIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTAW 241
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
+ PI HP N+N ++ +L D L + ++R L KK E +P+ +H+N
Sbjct: 242 IAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHIN 301
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYKINNSD 661
R PI I+ KVL R D +N+K + N + + +K IF++ + + +
Sbjct: 302 RCPI-IAPAKVLLPENAARLGIDRERCLENLKLLKA--NKSLVREKVTEIFMEER--SFE 356
Query: 662 LELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
N++ LY+ F S D +AILR++ P++L++ F ++++E L+F YRAR++ ET
Sbjct: 357 PSANVETTLYDGFFSPADKNNMAILRTLPPRELAHHGLQFADERVEALLFHYRARHYPET 416
Query: 722 LSYKELKRWKKY 733
LS E +W+KY
Sbjct: 417 LSRAEQIKWQKY 428
>gi|386823447|ref|ZP_10110596.1| exonuclease I [Serratia plymuthica PRI-2C]
gi|386379658|gb|EIJ20446.1| exonuclease I [Serratia plymuthica PRI-2C]
Length = 475
Score = 335 bits (859), Expect = 1e-88, Method: Composition-based stats.
Identities = 172/478 (35%), Positives = 272/478 (56%), Gaps = 23/478 (4%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
+TF +DYETFG + DRP QFA +RTD+ N I+ P+++YCKPA D+LPDP A +IT
Sbjct: 7 ATFYIHDYETFGKSPSMDRPAQFAGVRTDMDFNIIEEPLVIYCKPADDYLPDPEAVMITG 66
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ L GI E FA I + F PGT +GYN I FDDE++R +F+R+ +PY W
Sbjct: 67 ITPQLALAKGINEADFARQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRSFYDPYAYSW 126
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+N SRWDL++V++A Y L P GI WP +G PSF+LEHL+ N + H+ AHDA+SDV
Sbjct: 127 QNGNSRWDLLDVMRACYALRPEGILWPENEDGFPSFRLEHLTRANGVEHEHAHDAMSDVY 186
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+F+L R K + A I P +++ MF + S + P
Sbjct: 187 ATIAMAKLVKQAQPRLFDFLLQHRNKHKLNALIDIAEMTPLVHVSGMFGAARGNTSWVSP 246
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSF---KEDIPISMIHLNRSP 607
+ HP NKN +I +L D L +++R+ L ++ + +P+ ++H+N+ P
Sbjct: 247 LAWHPDNKNAVIMCDLAGDMTPLLTLSADELRERLYTRREDLAAGQSPVPLKLVHINKCP 306
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL--- 664
++ +L N R D +N++ + N + +K+ + +D E
Sbjct: 307 VLAPAKTLLPENAE-RLGIDRQACLQNLQL---LRQNPQVREKVVALF----ADAEPFKA 358
Query: 665 --NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
++D LY+ F S D + I++ P+ L ++ F + +++EL+F +RARN+ TL
Sbjct: 359 VDDVDARLYDGFFSDADKAAMKIIQQTKPQNLPALDLTFSDGRMKELLFRFRARNYPNTL 418
Query: 723 SYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESL--LKKANEHDTKILNALLMYGK 778
E +RW ++R ++ + + L++ESL L + ++ T +L AL YGK
Sbjct: 419 DDAEQRRWLQHRQEMLSAER-----VQSYVLQLESLYNLHEGDKEKTALLKALFEYGK 471
>gi|253688149|ref|YP_003017339.1| Exodeoxyribonuclease I [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251754727|gb|ACT12803.1| Exodeoxyribonuclease I [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 475
Score = 335 bits (859), Expect = 1e-88, Method: Composition-based stats.
Identities = 168/453 (37%), Positives = 265/453 (58%), Gaps = 22/453 (4%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF +DYETFG + RDRP QFA +RTD+ N I P+++YC+P+ D+LP+P A +IT I
Sbjct: 8 TFFIHDYETFGKHPARDRPAQFAGVRTDMDFNIIGEPLVIYCRPSDDYLPEPEAVMITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L G+ E +FA I F PGT +GYN I FDDE++R +F+RN +PY W+
Sbjct: 68 TPQVALAKGVNEAEFARQIHDAFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYDPYAYSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++ ++A Y L P GI WP N+G PSF+LEHL+ N +SH++AHDA+SDV A
Sbjct: 128 NGNSRWDLLDALRACYALRPEGIIWPENNDGLPSFRLEHLTKANGISHEQAHDAMSDVYA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L + P+LF ++ +LR K + A I P +P +++ MF + S S + P+
Sbjct: 188 TIAMAKLFKQAQPKLFEYLFTLRNKNKISALIDIPQMKPLVHVSGMFGAARSNTSWVVPL 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L D L D +R+ L ++++ + D +P+ ++H+N+ P
Sbjct: 248 AWHPDNRNAVIMCDLAGDMTPLLELDSETLRERLYTRRDALEPDQSAVPLKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY----KINNSDLEL 664
V++ L R D N+ + + NNT + +K+ + SD
Sbjct: 307 VLAPANTLRPEDAERLSIDRQRCLDNL---ALLRNNTSVREKVVELFAEAPAFAASD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
++D LY+ F D + + I++ +P+ L ++ F + +LE L+F YRARNF TL
Sbjct: 361 DVDLRLYDGFFGDADRMAMKIIQETAPQNLPALDLTFADNRLEPLLFRYRARNFPGTLDD 420
Query: 725 KELKRWKKYRISRFYNKK--------NNLYNIN 749
+E +RW ++R + F ++ +NLY ++
Sbjct: 421 REQQRWLQHRRAVFTPERLQDYLSELSNLYQLH 453
>gi|335420257|ref|ZP_08551295.1| exonuclease I [Salinisphaera shabanensis E1L3A]
gi|334894616|gb|EGM32801.1| exonuclease I [Salinisphaera shabanensis E1L3A]
Length = 484
Score = 335 bits (859), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 167/455 (36%), Positives = 255/455 (56%), Gaps = 6/455 (1%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
T+ W+DYETFG + RRD+P QFA IRTD+ N + P++LYC+P D L P A LIT
Sbjct: 8 QPTYFWHDYETFGADPRRDKPAQFAGIRTDLDFNIVGEPVVLYCQPPVDMLGHPEATLIT 67
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ L G+PE +F I P T SVGYN++ FDDE+TR+ WRN +PY RE
Sbjct: 68 GITPQVALERGVPEPEFIETIVAEMAVPNTCSVGYNSLQFDDEVTRYTLWRNFFDPYARE 127
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+N CSRWD+IN+++ Y L P GI WP + +G PSFKLEHL+ N+L+ ++AHDALSDV
Sbjct: 128 WQNGCSRWDIINMVRLAYALRPEGIEWPKREDGTPSFKLEHLASANDLAQERAHDALSDV 187
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+GLA+LIR+ P+LF+++++ R K + +P +++ F + + +S +
Sbjct: 188 HATIGLAKLIRDKQPKLFDYVVNNRDKHSARKMLDMGTRKPALHVSSKFPASNGCLSPVM 247
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDIP---ISMIHLNRS 606
PI HP NKN +I ++L DP L ++I + + ED P + +HLN+
Sbjct: 248 PIASHPNNKNCVIVYDLRVDPTPLLELPPDEIFERIFTPTADLPEDTPRVALKGVHLNKC 307
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNI 666
P V++ +++ + R D+N +N K L + K + + + + +
Sbjct: 308 P-VLAPFEMMRESEAARLDLDINQCRRNWKAIHDHL--AEVEAKAVAVFDAHAFEPDGDA 364
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+ LY+ F+S D +R S L++ F + +L EL+F YRAR+F ETL E
Sbjct: 365 EAALYDGFVSDDDRKLADQVRRTSAADLADGPIVFADNRLNELLFRYRARHFPETLVDAE 424
Query: 727 LKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKK 761
W + R + ++ + I L+++
Sbjct: 425 RDDWNNWLSKRLEFAPDGGLTLDDYDEVIAQLMQR 459
>gi|167623714|ref|YP_001674008.1| exonuclease I [Shewanella halifaxensis HAW-EB4]
gi|167353736|gb|ABZ76349.1| Exodeoxyribonuclease I [Shewanella halifaxensis HAW-EB4]
Length = 493
Score = 335 bits (858), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 174/473 (36%), Positives = 276/473 (58%), Gaps = 18/473 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+ T W+DYETFG N +DRP QFA +RTD+ LN I P YCK A D+LP P A LIT
Sbjct: 29 HPTIFWHDYETFGANPAKDRPSQFAGVRTDLDLNIIGEPETFYCKLANDYLPSPEAILIT 88
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G+PE +F I +F +P T VGYN++ FDDE++R+ F+RN I+PY RE
Sbjct: 89 GITPQLANLKGMPEAEFMDKINGLFSQPKTCVVGYNSLRFDDEVSRYGFYRNFIDPYARE 148
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+N +RWD+I++++A Y P GI WP K +G PSFKLE L+ N LSH+KAHDA+SDV
Sbjct: 149 WQNGNTRWDIIDLVRACYAFRPEGINWPEKEDGSPSFKLEQLTVANGLSHEKAHDAMSDV 208
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+LI+ P+LF++ SLR+K+ V I +P +++ S+ + +++
Sbjct: 209 YATIDMAKLIKTVQPKLFDYYFSLRQKQQVSKLIDVLEMKPLVHVSSKISALNGCTTIIA 268
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED-IPISM--IHLNRS 606
P+ H NKN +I NL D + + +IR+ + +++ D +PI + +H+N+S
Sbjct: 269 PVAYHSTNKNAVICVNLAMDVTPLIELSVEEIRERMYTRRSDLAPDELPIGLKQVHINKS 328
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNI 666
P I+ L+ R FD A + + + + + +K+ + + + ++
Sbjct: 329 PF-IAAANTLTDENAARLDFDKAFAREQFR---KLKQHPELREKLVAVFDVEHDSKAVDP 384
Query: 667 DEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
D+ LY+ F S D K+ I+R+ P L+ + F++ +L E++F YRARN+ ETL
Sbjct: 385 DQALYSGGFFSSADKAKIEIIRNTKPSNLAALELDFDDSRLAEMLFRYRARNYPETLDDS 444
Query: 726 ELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDT--KILNALLMY 776
E RW+++ +R N + + +E+LL++ + ++ K+L AL Y
Sbjct: 445 EQYRWREFCQTRL--------NDPDYIIRLENLLEETEQDESKQKLLQALCHY 489
>gi|165976088|ref|YP_001651681.1| exonuclease I [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
gi|307256692|ref|ZP_07538471.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
gi|165876189|gb|ABY69237.1| exonuclease I [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
gi|306864740|gb|EFM96644.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
Length = 514
Score = 335 bits (858), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 170/432 (39%), Positives = 256/432 (59%), Gaps = 11/432 (2%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
N N TF +YDYE+FG++ DRP QFA IRTD N I P+M YCK PD+LP P A +
Sbjct: 2 NKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVM 61
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
+T ITPQ C G+PE +FA+ I F +P T +GYN I +DDE+TR+ F+RN +PYE
Sbjct: 62 VTGITPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYE 121
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
WKN SRWDL+++++A Y L P GI W NG P+FKLE+L+ N ++H+ AHDA++
Sbjct: 122 YSWKNGNSRWDLLDLVRACYALRPDGIEWVIDENGMPNFKLENLTKANGIAHENAHDAMA 181
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ +A+LI+ P+LF F R KK + I P +++ MF + + +
Sbjct: 182 DVYATIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTAW 241
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
+ PI HP N+N ++ +L D L + ++R L KK E +P+ +H+N
Sbjct: 242 IAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHIN 301
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYKINNSD 661
R PI I+ KVL R D +N+K + N + + +K IF++ + + +
Sbjct: 302 RCPI-IAPAKVLLPENAARLGIDRERCLENLKLLKA--NKSLVREKVTEIFMEER--SFE 356
Query: 662 LELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
N++ LY+ F S D +AILR++ P++L++ F ++++E L+F YRAR++ ET
Sbjct: 357 PSANVETTLYDGFFSPADKNNMAILRTLPPQELAHHGLQFADERVEALLFHYRARHYPET 416
Query: 722 LSYKELKRWKKY 733
LS E +W+KY
Sbjct: 417 LSRAEQIKWQKY 428
>gi|307261134|ref|ZP_07542811.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 12 str.
1096]
gi|306869164|gb|EFN00964.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 12 str.
1096]
Length = 514
Score = 335 bits (858), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 170/432 (39%), Positives = 255/432 (59%), Gaps = 11/432 (2%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
N N TF +YDYE+FG++ DRP QFA IRTD N I P+M YCK PD+LP P A +
Sbjct: 2 NKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVM 61
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
+T ITPQ C G+PE +FA+ I F +P T +GYN I +DDE+TR+ F+RN +PYE
Sbjct: 62 VTDITPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYE 121
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
WKN SRWDL+++++A Y L P GI W NG P+FKLE+L+ N ++H+ AHDA++
Sbjct: 122 YSWKNGNSRWDLLDLVRACYALRPDGIEWVTDENGVPNFKLENLTKANGIAHENAHDAMA 181
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ +A+LI+ P+LF F R KK + I P +++ MF + + +
Sbjct: 182 DVYATIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTAW 241
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
+ PI HP N+N ++ +L D L + ++R L KK E +P+ +H+N
Sbjct: 242 IAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHIN 301
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYKINNSD 661
R PI I+ KVL R D +N+K + N + + +K IF++ + +
Sbjct: 302 RCPI-IAPAKVLLPENAARLGIDRERCLENLKLLKA--NKSLVREKVTEIFMEER--RFE 356
Query: 662 LELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
N++ LY+ F S D +AILR++ P++L++ F ++++E L+F YRAR++ ET
Sbjct: 357 PSANVETTLYDGFFSPADKNNMAILRTLPPRELAHHGLQFADERVEALLFHYRARHYPET 416
Query: 722 LSYKELKRWKKY 733
LS E +W+KY
Sbjct: 417 LSRAEQIKWQKY 428
>gi|307249878|ref|ZP_07531852.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 4 str. M62]
gi|306858067|gb|EFM90149.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 4 str. M62]
Length = 514
Score = 334 bits (857), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 170/432 (39%), Positives = 255/432 (59%), Gaps = 11/432 (2%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
N N TF +YDYE+FG++ DRP QFA IRTD N I P+M YCK PD+LP P A +
Sbjct: 2 NKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVM 61
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
+T ITPQ C G+PE +FA+ I F +P T +GYN I +DDE+TR+ F+RN +PYE
Sbjct: 62 VTGITPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYE 121
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
WKN SRWDL+++++A Y L P GI W NG P+FKLE+L+ N ++H+ AHDA++
Sbjct: 122 YSWKNGNSRWDLLDLVRACYALRPDGIEWVTDENGVPNFKLENLTKANGIAHENAHDAMA 181
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ +A+LI+ P+LF F R KK + I P +++ MF + + +
Sbjct: 182 DVYATIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTAW 241
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
+ PI HP N+N ++ +L D L + ++R L KK E +P+ +H+N
Sbjct: 242 IAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHIN 301
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYKINNSD 661
R PI I+ KVL R D +N+K + N + + +K IF++ + + +
Sbjct: 302 RCPI-IAPAKVLLPENAARLGIDRERCLENLKLLKA--NKSLVREKVTEIFMEER--SFE 356
Query: 662 LELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
N++ LY+ F S D +AILR++ P++L++ F +++E L+F YRAR++ ET
Sbjct: 357 PSANVETTLYDGFFSPADKNNMAILRTLPPQELAHHGLQFAGERVEALLFHYRARHYPET 416
Query: 722 LSYKELKRWKKY 733
LS E +W+KY
Sbjct: 417 LSRAEQIKWQKY 428
>gi|242239639|ref|YP_002987820.1| exonuclease I [Dickeya dadantii Ech703]
gi|242131696|gb|ACS85998.1| Exodeoxyribonuclease I [Dickeya dadantii Ech703]
Length = 476
Score = 334 bits (857), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 175/475 (36%), Positives = 265/475 (55%), Gaps = 15/475 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
STF +DYETFG + +DRP QFA IRTD N I P+++YC+PA D+LPDP A +IT
Sbjct: 7 ESTFFIHDYETFGKHPAKDRPAQFAGIRTDQDFNVIGEPVVIYCQPADDYLPDPEAVMIT 66
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ + GI E FA I F PGT +GYN I FDDE++R +F+RN I+PY
Sbjct: 67 GITPQLASSKGIGEVDFARQIHDAFSTPGTCIMGYNNIRFDDEVSRNLFYRNFIDPYAYS 126
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+N SRWDL++ ++A Y L P GI WP G PSF+LEHL+ N + H+ AHDA+SDV
Sbjct: 127 WQNGNSRWDLLDALRACYALRPEGIVWPENEEGFPSFRLEHLTRANGIEHEHAHDAMSDV 186
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +ARL + PRLF+++ LR K V A I +P +++ MF + S +
Sbjct: 187 YATIAMARLFKQTQPRLFDYLYQLRNKNKVNALIDIAEMKPLVHVSGMFGAARGNTSWIV 246
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N +I +L D L + +R L +++ E+ +PI ++H+N+
Sbjct: 247 PLAWHPENRNAVIVCDLAGDIDPLLNLSADALRTRLYTRRDLLGENESPVPIKLVHINKC 306
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELN 665
P V++ L R D N+K + + + +K+ + + + +
Sbjct: 307 P-VLAPAATLRPEDAARLGVDRQRCLDNLKL---LRQHPLVREKVVALFADAPAFEPAAD 362
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LY+ F D + I+R +P+ L + F ++++EEL+F YRARNF TL +
Sbjct: 363 VDLQLYDGFFGDADRAAMTIIRETAPQHLPALKLQFADRRMEELLFRYRARNFPGTLDDQ 422
Query: 726 ELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI--LNALLMYGK 778
E +RW ++R F ++ Y+ + ESL + + + KI L AL Y +
Sbjct: 423 EQQRWLRHRREIFTPERLQSYSETL-----ESLYQIHADDEKKIALLKALFTYAQ 472
>gi|419801602|ref|ZP_14326826.1| exodeoxyribonuclease I [Haemophilus parainfluenzae HK262]
gi|385193518|gb|EIF40880.1| exodeoxyribonuclease I [Haemophilus parainfluenzae HK262]
Length = 473
Score = 334 bits (857), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 173/428 (40%), Positives = 247/428 (57%), Gaps = 9/428 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YDYE+FG+N DRP QFA IRTD N I P+MLYCK D+LP P A ++T I
Sbjct: 6 SFFIYDYESFGINPASDRPAQFAGIRTDADFNIIGEPVMLYCKQTNDYLPAPEAVMVTGI 65
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C GIPE KFA+ I F +P T +GYN I +DDE+TR+ F+RN I+PYE WK
Sbjct: 66 TPQECNEKGIPEPKFAAKILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI W Y ++G PSF+LE L+ N + HK AHDA++DV A
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHKNAHDAMADVYA 185
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF F R KK + I P +++ M + + + P+
Sbjct: 186 TIAMAKLIKEKQPKLFQFFFEHRGKKEIEKLIDTAEMTPLVHVSGMLGNYRGNCAWVAPL 245
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLNRSP 607
HP N+N +I +L D L +R L KK+ +E +P+ ++H+N+ P
Sbjct: 246 AWHPTNQNAVIVCDLSGDIDNLLSKSAVDLRQDLYTKKSELEERGVSSVPLKLVHINKCP 305
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK-INNSDLELNI 666
I+ +L N R D N+ L+ +IF + + SD N+
Sbjct: 306 ILAPAKTLLPENAA-RLGIDRQQCLDNLAKLRQSLDIREKVIEIFSEEREFEPSD---NV 361
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+ ELYN F S D +AILR + P+KL+ FE+K++ EL+F YRAR+F +TL+ E
Sbjct: 362 ETELYNGFFSNADKNNMAILRDLPPEKLAEHGLAFEDKRIPELLFHYRARHFYKTLNRAE 421
Query: 727 LKRWKKYR 734
+W+KYR
Sbjct: 422 QIKWQKYR 429
>gi|53729178|ref|ZP_00134021.2| COG2925: Exonuclease I [Actinobacillus pleuropneumoniae serovar 1
str. 4074]
gi|126208153|ref|YP_001053378.1| exonuclease I [Actinobacillus pleuropneumoniae serovar 5b str. L20]
gi|126096945|gb|ABN73773.1| exodeoxyribonuclease I [Actinobacillus pleuropneumoniae serovar 5b
str. L20]
Length = 514
Score = 334 bits (856), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 170/432 (39%), Positives = 256/432 (59%), Gaps = 11/432 (2%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
N N TF +YDYE+FG++ DRP QFA IRTD N I P+M YCK PD+LP P A +
Sbjct: 2 NKNLTFFFYDYESFGVSPALDRPAQFACIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVM 61
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
+T ITPQ C G+PE +FA+ I F +P T +GYN I +DDE+TR+ F+RN +PYE
Sbjct: 62 VTGITPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYE 121
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
WKN SRWDL+++++A Y L P GI W NG P+FKLE+L+ N ++H+ AHDA++
Sbjct: 122 YSWKNGNSRWDLLDLVRACYALRPDGIEWVIDENGVPNFKLENLTKANGIAHENAHDAMA 181
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ +A+LI+ P+LF F R KK + I P +++ MF + + +
Sbjct: 182 DVYATIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTAW 241
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE---DIPISMIHLN 604
+ PI HP N+N ++ +L D L + ++R L KK E +P+ +H+N
Sbjct: 242 IAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEAVAPVPLKGVHIN 301
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYKINNSD 661
R PI I+ KVL R D +N+K + N + + +K IF++ + + +
Sbjct: 302 RCPI-IAPAKVLLPENAARLGIDRERCLENLKLLKA--NKSLVREKVTEIFMEER--SFE 356
Query: 662 LELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
N++ LY+ F S D +AILR++ P++L++ F ++++E L+F YRAR++ ET
Sbjct: 357 PSANVETTLYDGFFSPADKNNMAILRTLPPQELAHHGLQFADERVEALLFHYRARHYPET 416
Query: 722 LSYKELKRWKKY 733
LS E +W+KY
Sbjct: 417 LSRAEQIKWQKY 428
>gi|395496765|ref|ZP_10428344.1| exonuclease I [Pseudomonas sp. PAMC 25886]
Length = 475
Score = 334 bits (856), Expect = 2e-88, Method: Composition-based stats.
Identities = 168/453 (37%), Positives = 265/453 (58%), Gaps = 15/453 (3%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
+T WYDYET G+N R DRP Q A IRTD+ LN + P+ LYC+P+ D LP P AC IT
Sbjct: 2 TTIFWYDYETTGINPRTDRPLQVAGIRTDLELNEVGPPVNLYCQPSDDILPHPAACAITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPGVLAEKGLAEADFMTRVHAELAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+V++ Y L P GI WP + +G+ + KLE L+ N + H +AHDALSDVR
Sbjct: 122 QGGNSRWDLIDVVRTAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSDVR 180
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARL+R P+L++++ LR K+ V+ ++ + +P +I+ FS++ Y+ ++ P
Sbjct: 181 ATIALARLVREKQPKLYDWLFQLRSKQRVMDQV--RLLQPMVHISGRFSAERHYLGVVLP 238
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP N+N LI +L DP+ L D + +R L +++ E +P+ ++H+NR P
Sbjct: 239 LAWHPRNRNALIVCDLGLDPQGLLDEDADTLRKRLYTRRDDLAEGELPVPLKLLHINRCP 298
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELNI 666
V++ L VL + R + D++ + A + + +W+ K+ Y + +
Sbjct: 299 -VVAPLSVLRAQDRERLQLDMD---EYAARALRLSDAQELWRDKLAAIYAEEDFASSADP 354
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+++LY+ FI +D +R P++L+ + F++++L EL+F YRARNF ETL+ +E
Sbjct: 355 EQQLYDGFIGDRDRRLCEQVRVAEPEQLARQQWPFDDERLPELLFRYRARNFPETLNSEE 414
Query: 727 LKRWKKYRISRF----YNKKNNLYNINMFYLEI 755
+RW+ + R + N L + LE+
Sbjct: 415 QQRWRVFCQQRLSDPQWGAPNTLEDFKQARLEL 447
>gi|329912725|ref|ZP_08275792.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480]
gi|327545555|gb|EGF30735.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480]
Length = 914
Score = 334 bits (856), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 152/278 (54%), Positives = 210/278 (75%), Gaps = 6/278 (2%)
Query: 771 NALLMYGKIDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFD 830
N LL+ +DGSS +YRAF+ALPD+RN + P GALYG I MLR+L ++ A YIAC+FD
Sbjct: 3 NTLLL---VDGSSYLYRAFHALPDLRNKEGAPTGALYGIINMLRRLRSDFPAAYIACVFD 59
Query: 831 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 890
AKGK FR+ LY YKA R MP +L Q+ IH+ V+A+GWP+++++GVEADDVIGTLA
Sbjct: 60 AKGKTFRDDLYAEYKAQRASMPEDLARQVEPIHEAVRAMGWPLIMVEGVEADDVIGTLAV 119
Query: 891 QAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSL 948
AV +H +K +IST DKD+AQLV++ + LIN +N+ DR ++++FGV PE+IVDY +L
Sbjct: 120 DAV-RHGMKAVISTGDKDLAQLVNDDVMLINTMSNERLDRDGVLAKFGVPPERIVDYLTL 178
Query: 949 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI 1008
IGD DN+PGV K+GPKTAVK L QY +L+ I+ NA NI G +G+NLR AL+WLP+ K +
Sbjct: 179 IGDTVDNVPGVSKVGPKTAVKWLTQYGTLDGIVENAANIGGAVGENLRKALDWLPQAKVL 238
Query: 1009 LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
+T+KTDCDL ++VSIPESL+ + +D ++ L+ ++
Sbjct: 239 ITVKTDCDLVDHMVSIPESLMAKEQDPAKMIDLYARFG 276
>gi|422653566|ref|ZP_16716329.1| exonuclease I, partial [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|330966612|gb|EGH66872.1| exonuclease I [Pseudomonas syringae pv. actinidiae str. M302091]
Length = 431
Score = 334 bits (856), Expect = 2e-88, Method: Composition-based stats.
Identities = 171/427 (40%), Positives = 253/427 (59%), Gaps = 11/427 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
S+ WYDYET G+N R DR Q A IRTD LN I P+ LYC+P+ D LP P AC+IT
Sbjct: 3 SSIFWYDYETTGINPRNDRALQMAGIRTDAELNEIAPPVNLYCQPSDDILPHPAACVITG 62
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP G+ E F + + PGT GYNT+ FDDE+TR+ F+RN +PY REW
Sbjct: 63 ITPATLAEKGLCEADFMTRVHAELAAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAREW 122
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+V++A Y L P GI WP + +G+ + KLE L+ N + H +AHDALSDVR
Sbjct: 123 QGGNSRWDLIDVVRAAYALRPEGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSDVR 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARLIR PRL++++ +LR K+ V I + +P +I+ FS+ SY+ ++ P
Sbjct: 182 ATIALARLIREKQPRLYDYLFTLRTKQKVQKHIH--LMKPLVHISGRFSAARSYLGVVVP 239
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP N+N LI +L D L D ++ L + ++ KE +P+ ++H+NR P
Sbjct: 240 LAWHPHNRNALIVCDLHLDHSPLLQCDAETLKQRLYTRLDALKEGELPVPLKLLHINRCP 299
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELNI 666
VI+ L VL S R K D+ A+ + + +W+ K+ + Y ++ +
Sbjct: 300 -VIAPLGVLRSEDQQRLKLDMAGYQAR---AAQLSESREVWQDKLQVLYGKDDFVASEDP 355
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+++LY+ FI +D +R P++L+ + F++ +L +L+F YRARNF ETLS E
Sbjct: 356 EQQLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPDLLFRYRARNFPETLSTAE 415
Query: 727 LKRWKKY 733
RW+ +
Sbjct: 416 QHRWQDF 422
>gi|345879060|ref|ZP_08830741.1| 50S ribosomal protein L10 [endosymbiont of Riftia pachyptila (vent
Ph05)]
gi|344223913|gb|EGV50335.1| 50S ribosomal protein L10 [endosymbiont of Riftia pachyptila (vent
Ph05)]
Length = 486
Score = 334 bits (856), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 159/439 (36%), Positives = 256/439 (58%), Gaps = 9/439 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
TF W+DYET+G + +RDRP QF +RTD L I P+++Y +P+ D LP P AC++T
Sbjct: 9 QTFYWHDYETWGADPKRDRPAQFGGLRTDAELEPIGEPLVIYSRPSDDMLPQPEACMVTG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
I+PQ G+PE +F + I + +PGT VGYN+I FDDE TRF +RNL +PY REW
Sbjct: 69 ISPQLAYAKGVPEAEFIAQIHRELAQPGTCGVGYNSIRFDDEFTRFTLYRNLFDPYAREW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+N SRWD+I++++ + L P GI WP G+PSF+LE L+ N ++H+ AHDALSDV
Sbjct: 129 QNGNSRWDIIDMVRLTHALRPEGIEWPSDAAGRPSFRLELLTAANGIAHQAAHDALSDVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARP-FFYITHMFSSKHSYISLMW 549
AT+ LARLI+ PRL+ ++LS R K + + P +++ M+ + I+ +
Sbjct: 189 ATIALARLIKQRQPRLYGYLLSHRNKHQLRDLLNLKATPPILLHVSSMYPVELGCIAPVV 248
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
+ HP N N +I ++L DP L D +I L E IP+ +HLN+
Sbjct: 249 ALAQHPTNSNGVIVFDLRQDPAPLLELDDEQIHQRLFTPTADLPEGVERIPLKTVHLNKC 308
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNI 666
P+++ L++ R++ +L A ++ + +L+ + KI +++ + + +
Sbjct: 309 PVLVPT-NTLTAEAAERWQINLEQAERHRQ---QLLSAPELQAKISRVHQMKQFEPQTDP 364
Query: 667 DEELYNN-FISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
D LY+ F S+ D ++ +R +L+ ++F F++ +L E++F YRARN+ ETL+
Sbjct: 365 DLSLYSGPFFSEDDRRRMQQIRETPVDQLAGLHFAFDDARLPEMLFRYRARNWPETLNET 424
Query: 726 ELKRWKKYRISRFYNKKNN 744
E +RW +YR +R ++
Sbjct: 425 ERQRWDEYRQTRLFDADGG 443
>gi|66047247|ref|YP_237088.1| exonuclease I [Pseudomonas syringae pv. syringae B728a]
gi|63257954|gb|AAY39050.1| Exodeoxyribonuclease I subunit C [Pseudomonas syringae pv. syringae
B728a]
Length = 476
Score = 334 bits (856), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 170/453 (37%), Positives = 263/453 (58%), Gaps = 15/453 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ WYDYET G+N R DR Q A IRTD LN I P+ L+C+ + D LP P AC+IT
Sbjct: 2 TSSIFWYDYETTGINPRNDRALQMAGIRTDTELNEIAPPVNLHCQLSDDILPHPAACMIT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITP G+ E F + + PGT GYNT+ FDDE+TR+ F+RN +PY RE
Sbjct: 62 GITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI+V++A Y L P GI WP + +G+ + KLE L+ N + H +AHDALSDV
Sbjct: 122 WQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR P+L++++ +LR K+ V ++ + +P +I+ FS+ +Y+ ++
Sbjct: 181 RATIALARLIREKQPKLYDYLFALRSKQKVQEQVR--LMQPLVHISGRFSAARNYLGVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L D L D ++ L + ++ + +P+ ++H+NR
Sbjct: 239 PLAWHPHNRNALIVCDLHLDHAPLLHEDAEILKRRLYTRHDALSDGELPVPLKLLHINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELN 665
P VI+ L VL S R + D+ A + A+ + N +W K+ Y ++ +
Sbjct: 299 P-VIAPLGVLRSEDQQRLQLDM--AGYQAR-ATQLSENREVWHGKLAAIYGKDDFAASED 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY+ FI +D +R P++L+ + F++ +L EL+F YRARNF +TLS +
Sbjct: 355 PEQQLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSGE 414
Query: 726 ELKRWKKYRISRFYNKK----NNLYNINMFYLE 754
E RW+ + R N + N L++ ++E
Sbjct: 415 EQTRWRDFCQQRLRNPEWGAPNTLHDFTAAWVE 447
>gi|423693330|ref|ZP_17667850.1| exodeoxyribonuclease I [Pseudomonas fluorescens SS101]
gi|388001892|gb|EIK63221.1| exodeoxyribonuclease I [Pseudomonas fluorescens SS101]
Length = 475
Score = 333 bits (855), Expect = 3e-88, Method: Composition-based stats.
Identities = 166/427 (38%), Positives = 250/427 (58%), Gaps = 11/427 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ WYDYET G+N R DRP Q A IRTD+ LN + PI LYC+P+ D LP P AC IT
Sbjct: 2 TSIFWYDYETTGINPRNDRPLQVAGIRTDLELNEVGAPINLYCQPSDDILPHPAACAITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPGILAEKGLAEADFMTRVHAELAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+V++ Y L P GI WP + G+ + KLE L+ N + H +AHDALSDVR
Sbjct: 122 QGGNSRWDLIDVMRTAYALRPEGINWP-EQEGRVTLKLERLTEANGIDHGQAHDALSDVR 180
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARL+R+ P+L+ ++ LR K+ V+ E+ + +P +I+ FS++ Y+ ++ P
Sbjct: 181 ATIALARLVRDKQPKLYEWLFQLRSKQRVMDEV--RLLQPMVHISGRFSAERHYLGVVLP 238
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP N+N LI +L DP+ L D +R L +++ E +P+ ++H+NR P
Sbjct: 239 LAWHPRNRNALIVCDLGLDPQGLLDLDAATLRQRLYTRRDELAEGELPVPLKLLHINRCP 298
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELNI 666
V++ LKVL + R + D A + + +W+ K+ Y + +
Sbjct: 299 -VVAPLKVLRPQDLERLQLDKEACLAR---ALRLTDAQEVWRDKLAAIYAEEDFAPNADP 354
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+++LY+ FI +D +R P +L+ + F++ +L EL+F YRARNF ETL+ +E
Sbjct: 355 EQQLYDGFIGDRDRRLCEQVRMAEPAQLARQQWPFDDHRLPELLFRYRARNFPETLNNEE 414
Query: 727 LKRWKKY 733
RWK +
Sbjct: 415 QHRWKLF 421
>gi|253989171|ref|YP_003040527.1| exodeoxyribonuclease i (exonuclease i) (dn
deoxyribophosphodiesterase) [Photorhabdus asymbiotica]
gi|253780621|emb|CAQ83783.1| exodeoxyribonuclease i (exonuclease i) (dn
deoxyribophosphodiesterase) [Photorhabdus asymbiotica]
Length = 476
Score = 333 bits (855), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 173/474 (36%), Positives = 270/474 (56%), Gaps = 11/474 (2%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
N TF +DYETFG + DRP QFA +RTD+ N I++P+++YC PA D+LP P A +
Sbjct: 5 NEQPTFYIHDYETFGKHPALDRPAQFAGVRTDMDFNIIEDPLVIYCSPADDYLPQPEAVM 64
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
IT ITPQ L GI E +FA I +F P +GYN I FDDE++R +F+RN +PY
Sbjct: 65 ITGITPQVALEKGINEAEFARKIHNVFSVPNCCILGYNNIRFDDEVSRNIFYRNFYDPYA 124
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
W+ SRWDL++V++A Y L P GI WP ++G PSFKLEHL+ N + H AHDA+S
Sbjct: 125 YSWQKGNSRWDLLDVLRACYALRPEGIIWPENDDGLPSFKLEHLTKANGVEHSHAHDAMS 184
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ +A+L++ PR+F++ LR K+ + I P +P +++ MF + S SL
Sbjct: 185 DVYATIAMAKLLKKAQPRMFDYFFQLRNKQKISNLIDIPQMKPLVHVSGMFGAARSNTSL 244
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
+ P+ HP+N+N +I +L D L D + +R+ L + + D P+ ++H+N
Sbjct: 245 VAPLAWHPINRNAVIMCDLAGDISPLLELDADALRERLYTRHDELLPDQPPAPVKLVHIN 304
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL 664
+ PI+ + L + R D + KN+ + + NN I +K+ + E
Sbjct: 305 KCPIIAPD-NTLRAEDAERLGLDRDHCEKNL---AILRNNPQIREKVVELFAQAEPFPES 360
Query: 665 -NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
N+D +LY+ F S D + I+R P+ L ++ F++ +++ L+F YRARN+ TL+
Sbjct: 361 DNVDAKLYDGFFSDADKTAMNIIRETLPQNLPALDLTFQDPRIKTLLFRYRARNYPSTLT 420
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYG 777
Y E +RW ++R K + Y +F +E + ++NE + L L+ Y
Sbjct: 421 YDEQQRWLRHRQDVLTQDKLSEY---IFIIEQLFIEHQSNEEKCRQLKTLMEYA 471
>gi|392551346|ref|ZP_10298483.1| exonuclease I [Pseudoalteromonas spongiae UST010723-006]
Length = 479
Score = 333 bits (855), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 180/480 (37%), Positives = 275/480 (57%), Gaps = 23/480 (4%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
T W+DYET+G ++DRP QFA IRTD LN I P+++YCKP D+LP P A L+T I
Sbjct: 8 TIYWHDYETWGATPQKDRPSQFAGIRTDFDLNIIGEPLVIYCKPQADYLPHPMAALVTGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + +G+ E +F + I F K T GYN+I FDDE++R+ F+RN +PY REW+
Sbjct: 68 TPQHAMKHGLCEAEFINKIHVEFAKEQTCVAGYNSIRFDDEVSRYTFYRNFYDPYAREWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD+I++++A Y L P GI WP K +G PSFKLE L+ N + H AHDALSDV A
Sbjct: 128 NGNSRWDIIDLVRATYALRPEGINWPEKEDGTPSFKLEDLTAANGIDHSNAHDALSDVTA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+LI++ P+++++ +LR KK + P +++ + + + P+
Sbjct: 188 TIALAKLIKDKQPKMYHYYFNLRFKKAAQDLVDVFNMTPLVHVSSKIPASQGCTTWIAPM 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKK-NSFKEDIPISM--IHLNRSPI 608
H NKN +I +NL DP + + +IR+ L K+ N E +PI + +H+N+ P
Sbjct: 248 AFHHQNKNAVICFNLALDPTPLIELSVEEIRERLYTKRENLTDEQLPIGLKQVHVNKCPF 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL---- 664
+ +L N R D N+K + + + +K+ ++ N D L
Sbjct: 308 IAPAKTLLPENAE-RLGIDREACLANLKL---LRAHPELREKVV---EVFNDDSHLTPIT 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N D LY F S D K I+R+ P +L+ + F++ K EL+F YRARN+ E+LS+
Sbjct: 361 NPDYALYQGFASSGDKSKFDIIRTTEPSQLAGLQLEFDDAKYNELLFRYRARNWPESLSH 420
Query: 725 KELKRWKKYRISRFYNKKNNLY-NINMFYLEIESLLKKANEHDT-----KILNALLMYGK 778
+EL++W+KY + + ++N + N F L +E+L A+EH++ IL AL Y +
Sbjct: 421 QELEKWRKYCQGKLMHGEDNPSIDANEFMLSLENL---AHEHESDEKKMAILKALYHYAQ 477
>gi|238919203|ref|YP_002932718.1| exonuclease, putative [Edwardsiella ictaluri 93-146]
gi|238868772|gb|ACR68483.1| exonuclease, putative [Edwardsiella ictaluri 93-146]
Length = 473
Score = 333 bits (855), Expect = 4e-88, Method: Composition-based stats.
Identities = 175/475 (36%), Positives = 267/475 (56%), Gaps = 20/475 (4%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + RDRP QFA +RTD N I+ P + YC+PA D+LP P A +IT I
Sbjct: 7 TFLFHDYETFGQHPARDRPAQFAGVRTDADFNIIEEPQVFYCRPADDYLPQPDAVMITGI 66
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L G+ E +FA I ++F PGT +GYN I FDDE++R +F+RN +PY W+
Sbjct: 67 TPQTALAQGVCEAEFAGRIHRLFSVPGTCVLGYNNIRFDDEVSRNLFYRNFFDPYAYSWQ 126
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++ Y L P GI WP G PSFKLEHLS N + H AHDA++DV A
Sbjct: 127 NGNSRWDLLDVVRTCYALRPEGIVWPENEQGLPSFKLEHLSQANGIEHSNAHDAMADVYA 186
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+ ++ PRLF+++ LR K V I P +++ MF + SL+ P+
Sbjct: 187 TIALAQRVKQAQPRLFDYLFQLRNKNRVAQLIDIAAMTPLVHVSGMFGALRGNTSLIAPL 246
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIV 609
HP NKN +I +L D L D + +R+ L +N + +PI ++H+N+ P++
Sbjct: 247 AWHPENKNAVIVCDLDSDITPLLTLDADALRERLYTPRNELGDAAPVPIKLVHINKCPVL 306
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKI---FLDY-KINNSDLELN 665
+L+ N + R D N+ + + ++ I K+ F D SD +
Sbjct: 307 APEKTLLADNAV-RLGLDRQRCRDNL---ALLQQHSEIRDKVVSLFADAPPFPPSD---D 359
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LY+ F S D + I+R+ P+ L ++ F ++++ L+F YRARN+ TL
Sbjct: 360 VDSQLYDGFFSDADRQAMQIIRATLPQNLPALDLRFNDRRITPLLFRYRARNYPATLDES 419
Query: 726 ELKRWKKYRISRFYNK--KNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGK 778
E++RW+++R S + ++ L + M Y E ++ +L AL Y +
Sbjct: 420 EMRRWQQHRQSMLTPQHVQDYLQTLEMLYNRYEDQPQRLT-----LLQALFDYAR 469
>gi|455739892|ref|YP_007506158.1| Exodeoxyribonuclease I [Morganella morganii subsp. morganii KT]
gi|455421455|gb|AGG31785.1| Exodeoxyribonuclease I [Morganella morganii subsp. morganii KT]
Length = 472
Score = 333 bits (855), Expect = 4e-88, Method: Composition-based stats.
Identities = 171/476 (35%), Positives = 270/476 (56%), Gaps = 17/476 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
++ F ++DYETFG + DRP QFA +RTD N I +P++ YC PA D+LP P A +IT
Sbjct: 3 SAQFFFHDYETFGQDPAGDRPAQFAGVRTDSEFNIIADPVIAYCAPADDYLPQPAAVMIT 62
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ L G+ E +FA +I F +P T +GYN+I FDDE+TR +F+RN +PY
Sbjct: 63 GITPQEALQKGVNEAQFAKLIHDTFTQPDTCILGYNSIRFDDEVTRNIFYRNFYDPYAYS 122
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W N SRWDLI++ +A Y L P G WP + G PSFKLEHL+ N ++H+ AHDA++DV
Sbjct: 123 WMNRNSRWDLIDITRACYALRPDGTNWPENDEGLPSFKLEHLTAANGIAHENAHDAMADV 182
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+ +R PRLF++ SLR K+ + A I P +P +++ MF + + SL+
Sbjct: 183 YATIAMAKQLRGAQPRLFDYFFSLRDKRKLAALIDIPSMKPLVHVSGMFGAVRANTSLVA 242
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N +I +L D L D + +R++L +++ E +P+ ++H+N+
Sbjct: 243 PLAWHPDNRNAVIMCDLAGDLTPLLTLDADTLREHLYTRRDELPEGASPVPLKLVHINKC 302
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDLELN 665
PI+ L R D + +N A + + I +K+ + + + +
Sbjct: 303 PILAPE-NTLRPQDAQRIGLDKDLCARN---AELLHQHPEIREKVVAVFAQPREFPPQND 358
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +Y F S D + I+R PK L + +++ +L EL+F YRARNF TL
Sbjct: 359 VDHMIYQGFFSDSDKAAMTIIRETDPKNLPALALSYQDARLPELLFRYRARNFPGTLDEH 418
Query: 726 ELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHD---TKILNALLMYGK 778
E +RW +R F N N+ ++ +I ++++ +HD T++L L+ Y +
Sbjct: 419 EQQRWLAHRREVF-----NQDNLTRYFEQIGEMMQEY-QHDANKTELLKKLVQYAQ 468
>gi|312962787|ref|ZP_07777274.1| exodeoxyribonuclease I [Pseudomonas fluorescens WH6]
gi|311282814|gb|EFQ61408.1| exodeoxyribonuclease I [Pseudomonas fluorescens WH6]
Length = 475
Score = 333 bits (855), Expect = 4e-88, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 253/434 (58%), Gaps = 11/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ WYDYET G+N R DRP Q A IRTD+ LN I P+ LYC+P D LP P AC IT
Sbjct: 2 TSIFWYDYETTGINPRNDRPLQVAGIRTDLELNEIGPPVNLYCRPGDDILPHPAACAITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPGVLDEKGLAEADFMTRVHAELAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+V++ Y L P GI WP + +G+ + KLE L+ N + H +AHDALSDVR
Sbjct: 122 QGGNSRWDLIDVVRTAYALRPEGIEWP-QQDGRVTLKLERLTAANAIDHGQAHDALSDVR 180
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARL+R PRL++++ LR K+ V+ ++ + +P +I+ FS++ Y+ ++ P
Sbjct: 181 ATIALARLVREKQPRLYDWLFQLRSKQRVMDQV--RLLQPMVHISGRFSAERHYLGVVLP 238
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP N+N LI +L DP+ L D +R L +++ E +P+ ++H+NR P
Sbjct: 239 LAWHPRNRNALIVCDLGLDPQGLLDTDAETLRQRLYTRRDDLAEGELPVPLKLVHVNRCP 298
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELNI 666
V++ L VL + R + L+ A + A + + +W+ K+ Y +
Sbjct: 299 -VVAPLSVLRAE--DRERLQLDMAVYQAR-ALRLTDAQELWRDKLAAIYAQEEFAANADP 354
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+++LY+ FI +D +R P +L+ + F++ +L EL+F YRARNF +TL +E
Sbjct: 355 EQQLYDGFIGDRDRRLCEQVRMAEPSQLARAQWPFDDHRLPELLFRYRARNFPDTLDSEE 414
Query: 727 LKRWKKYRISRFYN 740
+RWK + R N
Sbjct: 415 QQRWKLFCQQRLSN 428
>gi|291618007|ref|YP_003520749.1| SbcB [Pantoea ananatis LMG 20103]
gi|378766600|ref|YP_005195062.1| exodeoxyribonuclease I [Pantoea ananatis LMG 5342]
gi|386078795|ref|YP_005992320.1| exodeoxyribonuclease I SbcB [Pantoea ananatis PA13]
gi|291153037|gb|ADD77621.1| SbcB [Pantoea ananatis LMG 20103]
gi|354987976|gb|AER32100.1| exodeoxyribonuclease I SbcB [Pantoea ananatis PA13]
gi|365186075|emb|CCF09025.1| exodeoxyribonuclease I [Pantoea ananatis LMG 5342]
Length = 473
Score = 333 bits (855), Expect = 4e-88, Method: Composition-based stats.
Identities = 174/475 (36%), Positives = 270/475 (56%), Gaps = 20/475 (4%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + RDRP QFA +RTD N + P + YC+P D+LP P A +IT I
Sbjct: 7 TFLFHDYETFGTSPSRDRPAQFAGLRTDSNFNPVGEPEVFYCRPPDDYLPQPEAVMITGI 66
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G+ E +FA+ I +F T VGYN + FDDE+TR +F+RN +PY W+
Sbjct: 67 TPQIAASRGVSEAEFAARIHALFTAEQTCVVGYNNVRFDDEVTRNIFYRNFYDPYGWSWQ 126
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++A Y L P GI WP +G PSF+LEHL+ N ++H+ AHDA+SDV A
Sbjct: 127 NGNSRWDLLDVMRACYALRPEGINWPENEDGFPSFRLEHLTKANGVAHENAHDAMSDVYA 186
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
TL +A+L++ P+LF F+ + R K ++ I P +P +++ MF + S + P+
Sbjct: 187 TLAMAKLVKEKQPKLFEFLFTHRNKNKLMTLIDIPQMKPLVHVSGMFGAARGNTSWVVPL 246
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N LI +L D L D + +R+ L +K+ + IP+ ++H+N+ P V
Sbjct: 247 AWHPDNRNALIVVDLAGDMTPLLTLDADSLRERLYTRKSELGDQSAIPVKLVHINKCP-V 305
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYK-INNSDLELN 665
++ L R D N+ +++ + I +K IF D + SD +
Sbjct: 306 LAPANTLRPEDAGRLGIDRKSCLDNL---ATLRQHPEIREKLVAIFADAEPFTPSD---D 359
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LY+ F S D + I+R +P L ++ F++ ++ +L+F YRARNF TL
Sbjct: 360 VDTQLYDGFFSDADRAGMNIIRQTAPANLPALDLTFDSPRVAKLLFRYRARNFPGTLDDA 419
Query: 726 ELKRWKKYRISRFYNKKNNLYNINMFYLEIESL--LKKANEHDTKILNALLMYGK 778
E +RW ++R K + F +E+ESL L ++++ L AL +Y +
Sbjct: 420 EQQRWLQHRREVLNPDK-----VQSFLMELESLASLHESDQEKLAQLKALYLYAQ 469
>gi|451945801|ref|YP_007466396.1| exonuclease I [Desulfocapsa sulfexigens DSM 10523]
gi|451905149|gb|AGF76743.1| exonuclease I [Desulfocapsa sulfexigens DSM 10523]
Length = 478
Score = 333 bits (854), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 180/480 (37%), Positives = 270/480 (56%), Gaps = 11/480 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
+T W+DYET+G + RRDRP QFA IRTDI LN I P+M YCKPA D LP P ACLIT
Sbjct: 3 TTLYWHDYETWGADPRRDRPAQFAGIRTDINLNIIGKPMMNYCKPALDMLPQPEACLITG 62
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ + G+ E +F + I F++PGT VGYN+I FDDE TR+ +RN +PY REW
Sbjct: 63 ITPQTAMEEGLCEAEFMAEIYHEFIQPGTCGVGYNSIRFDDEFTRYGLYRNFYDPYAREW 122
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+N SRWD+I++++ L P GI WP G SF+LE L+ N++SH+ AHDALSDV
Sbjct: 123 RNGNSRWDIIDMLRLTRALRPEGIEWPTNEEGVTSFRLEDLTRANSISHEGAHDALSDVH 182
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARLIR P+L+N++ +R K+ V + + +++ M+ +K IS + P
Sbjct: 183 ATIELARLIRTRQPKLYNYLFDMRDKRKVGSNLNIQEQLVVLHVSSMYPAKQGCISPVIP 242
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP+NKN +I ++L HDP L +++I+ L + E IP+ IHLN+SP
Sbjct: 243 LAAHPINKNGIIVYDLRHDPSPLLTLAVDEIKKRLFTRSEDLPEGVERIPLKTIHLNKSP 302
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
+V+ + L+ + +L + K + + + +++ D + + D
Sbjct: 303 VVVP-MSTLTPEAAECWGINLKNIETHAKQLRGLPDLSRKLQQVHGDQQFPPI---TDPD 358
Query: 668 EELYNN-FISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+ LY F S +D + + MS L+ FE+ +L E++F YRARN+ +LS +E
Sbjct: 359 QNLYGGGFFSDRDRALMEDIHDMSINDLAKTRMKFEDPRLSEMLFRYRARNWPHSLSQEE 418
Query: 727 LKRWKKYRISRFYNKKNNLYNINMFY---LEIESLLKKANEHDTKILNALLMYGKIDGSS 783
RW +R +R N + Y L + + E + KI++AL + + G S
Sbjct: 419 RVRWNTFRHNRVTNPDADCGITLSEYRKQLAKKVMQPDVKERERKIISALADWPTLLGLS 478
>gi|303250424|ref|ZP_07336622.1| exonuclease I [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|307252223|ref|ZP_07534120.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|302650750|gb|EFL80908.1| exonuclease I [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|306860145|gb|EFM92161.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
Length = 514
Score = 333 bits (854), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 169/432 (39%), Positives = 256/432 (59%), Gaps = 11/432 (2%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
N N TF +YDYE+FG++ DRP QFA IRTD N I P+M YCK PD+LP P A +
Sbjct: 2 NKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVM 61
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
+T ITPQ C G+PE +FA+ I F +P T +GYN I +DDE+TR+ F+RN +PYE
Sbjct: 62 VTGITPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYE 121
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
WKN SRWDL+++++A Y L P GI W NG P+FKLE+L+ N ++H+ AHDA++
Sbjct: 122 YSWKNGNSRWDLLDLVRACYALRPDGIEWVIDENGVPNFKLENLTKANGIAHENAHDAMA 181
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ +A+LI+ P+LF F R KK + I P +++ MF + + +
Sbjct: 182 DVYATIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTAW 241
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
+ PI HP N+N ++ +L D L + ++R L KK E +P+ +H+N
Sbjct: 242 IAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHIN 301
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYKINNSD 661
R PI I+ KVL R D +N+K + N + + +K IF++ + + +
Sbjct: 302 RCPI-IAPAKVLLPENAARLGIDRERCLENLKLLKA--NKSLVREKVTEIFMEER--SFE 356
Query: 662 LELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
N++ LY+ F S D ++ILR++ P++L++ F ++++E L+F YRAR++ ET
Sbjct: 357 PSANVETTLYDGFFSPADKNNMSILRTLPPQELAHHGLQFADERVEALLFHYRARHYPET 416
Query: 722 LSYKELKRWKKY 733
LS E +W+KY
Sbjct: 417 LSRAEQIKWQKY 428
>gi|307245526|ref|ZP_07527613.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|307254482|ref|ZP_07536318.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|307258940|ref|ZP_07540671.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 11 str.
56153]
gi|306853585|gb|EFM85803.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|306862532|gb|EFM94490.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|306866964|gb|EFM98821.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 11 str.
56153]
Length = 514
Score = 333 bits (854), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 169/432 (39%), Positives = 255/432 (59%), Gaps = 11/432 (2%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
N N TF +YDYE+FG+ DRP QFA IRTD N I P+M YCK PD+LP P A +
Sbjct: 2 NKNLTFFFYDYESFGVGPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVM 61
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
+T ITPQ C G+PE +FA+ I F +P T +GYN I +DDE+TR+ F+RN +PYE
Sbjct: 62 VTGITPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYE 121
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
WKN SRWDL+++++A Y L P GI W NG P+FKLE+L+ N ++H+ AHDA++
Sbjct: 122 YSWKNGNSRWDLLDLVRACYALRPDGIEWVIDENGVPNFKLENLTKANGIAHENAHDAMA 181
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ +A+LI+ P+LF F R KK + I P +++ MF + + +
Sbjct: 182 DVYATIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTAW 241
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
+ PI HP N+N ++ +L D L + ++R L KK E +P+ +H+N
Sbjct: 242 IAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHIN 301
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYKINNSD 661
R PI I+ KVL R D +N+K + N + + +K IF++ + + +
Sbjct: 302 RCPI-IAPAKVLLPENAARLGIDRERCLENLKLLKA--NKSLVREKVTEIFMEER--SFE 356
Query: 662 LELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
N++ LY+ F S D ++ILR++ P++L++ F ++++E L+F YRAR++ ET
Sbjct: 357 PSANVETTLYDGFFSPADKNNMSILRTLPPQELAHHGLQFADERVEALLFHYRARHYPET 416
Query: 722 LSYKELKRWKKY 733
LS E +W+KY
Sbjct: 417 LSRAEQIKWQKY 428
>gi|407692328|ref|YP_006817117.1| exonuclease I [Actinobacillus suis H91-0380]
gi|407388385|gb|AFU18878.1| exonuclease I [Actinobacillus suis H91-0380]
Length = 514
Score = 333 bits (854), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 175/455 (38%), Positives = 265/455 (58%), Gaps = 18/455 (3%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
N N TF +YDYE+FG++ DRP QFA IRTD N I P+M YCK PD+LP P A +
Sbjct: 2 NKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVM 61
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
+T ITPQ C G+ E +FA+ I F +P T +GYN I +DDE+TR+ F+RN +PYE
Sbjct: 62 VTGITPQQCNAEGVSEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYE 121
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
WKN SRWDL+++++A Y L P GI W NG P+FKLE+L+ N ++H+ AHDA++
Sbjct: 122 YSWKNGNSRWDLLDLVRACYALRPDGIEWVTDENGVPNFKLENLTKANGIAHENAHDAMA 181
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ +A+LI+ P+LF F R KK + I P +++ MF + +
Sbjct: 182 DVYATIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGDMTPLVHVSGMFGNARGNTAW 241
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI-PISM--IHLN 604
+ PI HP N+N ++ +L D L + ++R L KK E + P+S+ +H+N
Sbjct: 242 IAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVSLKGVHIN 301
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYKINNSD 661
R PI I+ KVL R D +N+K + N + + +K IF++ + S
Sbjct: 302 RCPI-IAPAKVLLPENAARLGIDRERCLENLKLLKA--NKSLVREKVTEIFMEERRFESS 358
Query: 662 LELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
N++ LY+ F S D +AILR++ P++L++ F ++++E L+F YRAR++ ET
Sbjct: 359 --ANVETTLYDGFFSPADKNNMAILRTLPPQELAHHGLQFADERVEALLFHYRARHYPET 416
Query: 722 LSYKELKRWKKY-------RISRFYNKKNNLYNIN 749
LS E +W+KY + ++F +NL+ I+
Sbjct: 417 LSRAEQIKWQKYCHQQIDAKSAQFAEAIDNLFQIH 451
>gi|91793639|ref|YP_563290.1| exonuclease I [Shewanella denitrificans OS217]
gi|91715641|gb|ABE55567.1| Exodeoxyribonuclease I subunit C [Shewanella denitrificans OS217]
Length = 470
Score = 333 bits (853), Expect = 5e-88, Method: Composition-based stats.
Identities = 184/475 (38%), Positives = 272/475 (57%), Gaps = 26/475 (5%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
T W+DYETFG N +DRP QFA IRTD+ LN I P YCK A D+LP P A LIT I
Sbjct: 8 TLFWHDYETFGANPAKDRPSQFAGIRTDLDLNIIGEPETFYCKLATDYLPSPEAILITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ GIPE +F I +F + T VGYN++ FDDE++R+ F+RN I+PY REW+
Sbjct: 68 TPQLANMKGIPETEFMGRINALFSQENTCVVGYNSLRFDDEVSRYGFYRNFIDPYAREWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD+I++++A Y P GI WP K +G SFKLE L+ N LSH+KAHDA+SDV A
Sbjct: 128 NGNSRWDIIDLVRACYAFRPDGINWPRKEDGTVSFKLELLTQANGLSHEKAHDAMSDVYA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+L+++ SLR+K+ V A+I +P +++ S+ ++ +L+ P+
Sbjct: 188 TIAMAKLIKQVQPKLYDYYFSLRRKQAVAAQIDVLKMQPLVHVSSKISALNACTTLIAPM 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN ++ NL D L +I + + D IP+ IHLN+ P
Sbjct: 248 AYHPTNKNAVLCVNLAMDISPLLELSAEEIAARMYTSRADLAPDELPIPLKQIHLNKCPF 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCA---FKNIKCASSILNNTYIWKKIFLDYK-INNSDLEL 664
+ S K+L +L R FD A +K +K + +F K N+SD +L
Sbjct: 308 IASP-KLLDDDLTSRLNFDKAFAREQYKRLKQHPELREKLV---GVFEQTKEFNHSDPDL 363
Query: 665 NIDEELY-NNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
LY F S D K+ I+R P+ L+ ++ F++ ++ E++F YR RN+ E L
Sbjct: 364 ----MLYGGGFFSHADKAKMDIIRQTQPQNLAALDLKFDDNRIAEMLFRYRGRNYPELLD 419
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKA--NEHDTKILNALLMY 776
+ E RW+++ SR + + +++E+LL+ + +EH K+L AL Y
Sbjct: 420 HDESVRWREFCQSRLADAD--------YVIKLENLLEASAQDEHKQKLLRALCQY 466
>gi|345862818|ref|ZP_08815032.1| exodeoxyribonuclease I [endosymbiont of Tevnia jerichonana (vent
Tica)]
gi|345126160|gb|EGW56026.1| exodeoxyribonuclease I [endosymbiont of Tevnia jerichonana (vent
Tica)]
Length = 480
Score = 333 bits (853), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 159/439 (36%), Positives = 256/439 (58%), Gaps = 9/439 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
TF W+DYET+G + +RDRP QF +RTD L I P+++Y +P+ D LP P AC++T
Sbjct: 3 QTFYWHDYETWGADPKRDRPAQFGGLRTDAELEPIGEPLVIYSRPSDDMLPQPEACMVTG 62
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
I+PQ G+PE +F + I + +PGT VGYN+I FDDE TRF +RNL +PY REW
Sbjct: 63 ISPQLAYAKGVPEAEFIAQIHRELAQPGTCGVGYNSIRFDDEFTRFTLYRNLFDPYAREW 122
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+N SRWD+I++++ + L P GI WP G+PSF+LE L+ N ++H+ AHDALSDV
Sbjct: 123 QNGNSRWDIIDMVRLTHALRPEGIEWPSDAAGRPSFRLELLTAANGIAHQAAHDALSDVY 182
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARP-FFYITHMFSSKHSYISLMW 549
AT+ LARLI+ PRL+ ++LS R K + + P +++ M+ + I+ +
Sbjct: 183 ATIALARLIKQRQPRLYGYLLSHRNKHQLRDLLNLKATPPILLHVSSMYPVELGCIAPVV 242
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
+ HP N N +I ++L DP L D +I L E IP+ +HLN+
Sbjct: 243 ALAQHPTNSNGVIVFDLRQDPAPLLELDDEQIHQRLFTPTADLPEGVERIPLKTVHLNKC 302
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNI 666
P+++ L++ R++ +L A ++ + +L+ + KI +++ + + +
Sbjct: 303 PVLVPT-NTLTAEAAERWQINLEQAERHRQ---QLLSALELQAKISRVHQMKQFEPQTDP 358
Query: 667 DEELYNN-FISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
D LY+ F S+ D ++ +R +L+ ++F F++ +L E++F YRARN+ ETL+
Sbjct: 359 DLSLYSGPFFSEDDRRRMQQIRETPVDQLAGLHFAFDDARLPEMLFRYRARNWPETLNET 418
Query: 726 ELKRWKKYRISRFYNKKNN 744
E +RW +YR +R ++
Sbjct: 419 ERQRWDEYRQTRLFDADGG 437
>gi|387895371|ref|YP_006325668.1| exodeoxyribonuclease I [Pseudomonas fluorescens A506]
gi|387164255|gb|AFJ59454.1| exodeoxyribonuclease I [Pseudomonas fluorescens A506]
Length = 475
Score = 333 bits (853), Expect = 6e-88, Method: Composition-based stats.
Identities = 165/427 (38%), Positives = 249/427 (58%), Gaps = 11/427 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ WYDYET G+N R DRP Q A IRTD+ LN + PI LYC+P+ D LP P AC IT
Sbjct: 2 TSIFWYDYETTGINPRNDRPLQVAGIRTDLELNEVGAPINLYCQPSDDILPHPAACAITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPSILAEKGLAEADFMTRVHAELAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+V++ Y L P GI WP + +G+ + KLE L+ N + H +AHDALSDVR
Sbjct: 122 QGGNSRWDLIDVMRTAYALRPEGINWP-EQDGRVTLKLERLTEANGIDHGQAHDALSDVR 180
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARL+R P+L+ ++ LR K+ V+ ++ + +P +I+ FS++ Y+ ++ P
Sbjct: 181 ATIALARLVREKQPKLYEWLFQLRSKQRVMDQV--RLLQPMVHISGRFSAERHYLGVVLP 238
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP N+N LI +L DP+ L D +R L +++ E +P+ ++H+NR P
Sbjct: 239 LAWHPRNRNALIVCDLGLDPQGLLDLDAATLRQRLYTRRDELAEGELPVPLKLLHINRCP 298
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELNI 666
V++ LKVL + R + D A + + +W+ K+ Y + +
Sbjct: 299 -VVAPLKVLRPQDLERLQLDKEACLAR---ALRLTDAQEVWRDKLAAIYAEEDFASNADP 354
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+++LY FI +D +R P +L+ + F++ +L EL+F YRARNF ETL+ E
Sbjct: 355 EQQLYEGFIGDRDRRLCEQVRMAEPAQLARQQWPFDDHRLPELLFRYRARNFPETLNNDE 414
Query: 727 LKRWKKY 733
+RWK +
Sbjct: 415 QQRWKLF 421
>gi|229592327|ref|YP_002874446.1| exonuclease I [Pseudomonas fluorescens SBW25]
gi|229364193|emb|CAY51862.1| exodeoxyribonuclease I [Pseudomonas fluorescens SBW25]
Length = 475
Score = 332 bits (852), Expect = 6e-88, Method: Composition-based stats.
Identities = 164/427 (38%), Positives = 253/427 (59%), Gaps = 11/427 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ WYDYET G+N R DRP Q A IRTD+ LN I P+ LYC+P+ D LP P AC IT
Sbjct: 2 TSIFWYDYETTGINPRSDRPLQVAGIRTDLELNEIGAPVNLYCQPSDDILPHPVACAITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPAILAEKGLAEADFMTRVHAELAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+V++ Y L P GI WP + +G+ + KLE L+ N + H +AHDALSDVR
Sbjct: 122 QGGNSRWDLIDVVRTAYALRPEGIEWP-QQDGRVTLKLERLTEANGIDHGQAHDALSDVR 180
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LAR IR P+L+ ++ LR K+ V+ ++ + +P +I+ FS++ Y+ ++ P
Sbjct: 181 ATIALARRIREKQPKLYEWLFQLRSKQRVMDQV--RLLQPMVHISGRFSAERHYLGVVLP 238
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP N+N LI +L DP+ L D + +R L ++ + E +P+ ++H+NR P
Sbjct: 239 LAWHPRNRNALIVCDLGLDPQGLLDLDADTLRQRLYTRREALAEGELPVPLKLVHINRCP 298
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELNI 666
V++ L VL + R D+N + A + + +W+ K+ Y + +
Sbjct: 299 -VVAPLNVLRAEDRERLHLDMNIYQER---ALRLTDAQEVWRDKLAAIYAEEDFAASADP 354
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+++LY+ FI +D +R+ P +L+ + F++ +L EL+F YRARNF +TL+ +E
Sbjct: 355 EQQLYDGFIGDRDRRLCEQVRTAEPAQLARQQWPFDDHRLPELLFRYRARNFPDTLNSEE 414
Query: 727 LKRWKKY 733
+RWK +
Sbjct: 415 QQRWKLF 421
>gi|85711607|ref|ZP_01042664.1| Exonuclease I [Idiomarina baltica OS145]
gi|85694467|gb|EAQ32408.1| Exonuclease I [Idiomarina baltica OS145]
Length = 486
Score = 332 bits (852), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 169/479 (35%), Positives = 267/479 (55%), Gaps = 19/479 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF W+DYET+G DRP QFA +RT + + P+ +Y +P PDFLPDP A LIT I
Sbjct: 13 TFYWHDYETWGARPLIDRPAQFAGMRTTLDFQPVGRPLTIYAQPTPDFLPDPEAVLITGI 72
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ+ LN G+ E FA I + +P TI +GYN I FDDE+TR + +RN +PY W+
Sbjct: 73 TPQYALNQGVNEANFAQAIVQEMSQPNTIIIGYNNIRFDDEVTRSLCYRNFYDPYAHTWQ 132
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDLI+V++A Y L P GI WP +G+ + +LE L+ N + H +AHDA+SDVRA
Sbjct: 133 NGNSRWDLIDVVRACYALRPEGIHWPEDEDGRVTLRLEKLTQANRIDHGQAHDAMSDVRA 192
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L+ P+L+ F L R K ++ I W +P +++ ++ + + ++S + PI
Sbjct: 193 TIAMAQLLAEKQPKLWQFALQHRHKNDLMNLINWQQIKPLVHVSGLYGADNFFVSAVLPI 252
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFK----EDIPISMIHLNRSP 607
H N LI W+L +P F ++RD L + + + + I LNR P
Sbjct: 253 GFHAQRANALIAWDLRINPADFADYSTEQLRDLLFASRQQHETNGTQRPGATQITLNRCP 312
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLE---- 663
++ L L++ R + DL + + + N+ +I I +S LE
Sbjct: 313 F-LAPLATLTAEAQQRTQIDLATLRERTRW---LAENSDFRDRIM---AIFDSALEHGEQ 365
Query: 664 --LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
L++D+ LY+ F +D L ++R+M P++L+ + ++ +L EL+F YRARN+ T
Sbjct: 366 PPLDVDQRLYDGFFDAQDKQNLQMIRAMRPEQLAGIELNTQDNRLPELLFRYRARNYPAT 425
Query: 722 LSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLK--KANEHDTKILNALLMYGK 778
L EL+RW+++ R N +I F ++E L + + N+H ++L +L Y +
Sbjct: 426 LDQSELQRWQQFCRQRLTEPTNGQLSITEFAEKLEGLAQQYQDNKHRMQLLKSLYDYAQ 484
>gi|389756378|ref|ZP_10191488.1| exonuclease I [Rhodanobacter sp. 115]
gi|388431626|gb|EIL88684.1| exonuclease I [Rhodanobacter sp. 115]
Length = 481
Score = 332 bits (852), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 170/434 (39%), Positives = 247/434 (56%), Gaps = 14/434 (3%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
TF W+DYETFG + RRDRP QFA IRT + L I P+M + +P D LP P ACLIT
Sbjct: 2 QTFFWHDYETFGADTRRDRPVQFAGIRTTMELEIIGEPVMFFGQPPRDSLPHPEACLITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G+ E +FA+ + + +PGT VGYN++ FDDE+TR + +RN PY REW
Sbjct: 62 ITPQQAEREGVSEAEFAARVHEQLAEPGTCGVGYNSLRFDDEVTRQLLYRNFYEPYGREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
N SRWDLI++++ L P GI WP + +G PSFKLEHL+ N+L ++AHDALSDV
Sbjct: 122 ANGNSRWDLIDLVRMCEALRPEGIHWPTREDGSPSFKLEHLATANHLLQERAHDALSDVH 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
A + LARLIR PRL+++ +LR+K+ V + P +I+ + + ++++ P
Sbjct: 182 ALIDLARLIRVRQPRLWDWHFALRRKQRVFELLDVANMTPLVHISSRYPASRHCLAIIAP 241
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ +HP +I ++L DP + L D ++I D + + E IP+ + NR+P
Sbjct: 242 LALHPSRPGEIIVYDLATDPAELLALDEDEIADRVFTSRADLPEGIERIPLRTVRANRTP 301
Query: 608 IVISNLKVLSSNLMFRYKFDL--NCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELN 665
++ L L + R + DL N A ++ A++ L + ++IF SDL
Sbjct: 302 -ALAPLSTLKGTDLGRLQLDLERNLAHRDTLHAATGLADKV--RRIF----ARASDLPPP 354
Query: 666 IDEE--LYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
D E LY F+ D LA +R+ P +L F F + + EL+F YRARN+ ETL
Sbjct: 355 EDPELALYAGFLPDGDKRLLAEVRATPPAQLGTRTFPFRDPRYPELLFRYRARNWPETLD 414
Query: 724 YKELKRWKKYRISR 737
E +RW +R R
Sbjct: 415 AAERERWGHFRRER 428
>gi|440231594|ref|YP_007345387.1| exonuclease I [Serratia marcescens FGI94]
gi|440053299|gb|AGB83202.1| exonuclease I [Serratia marcescens FGI94]
Length = 476
Score = 332 bits (852), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 173/478 (36%), Positives = 269/478 (56%), Gaps = 21/478 (4%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+TF +DYETFG + DRP QFA +RTD+ N I+ P+++YC PA D+LPDP A +IT
Sbjct: 7 QNTFYIHDYETFGKSPSLDRPAQFAGVRTDMDFNIIEEPLVIYCTPADDYLPDPEAVMIT 66
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ L G+ E +FA I + F PGT +GYN I FDDE++R +F+RN +PY
Sbjct: 67 GITPQEALAKGVCEAEFARQINEAFSVPGTCILGYNNIRFDDEVSRNIFYRNFHDPYAYS 126
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+N SRWDL++V++A Y L P GI WP + G PSF+LEHL+ N + H++AHDA+SDV
Sbjct: 127 WQNGNSRWDLLDVMRACYALRPEGIVWPENDEGFPSFRLEHLTRANGVEHEQAHDAMSDV 186
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+L++ PRLF+++L R K + A I P +++ MF + S S +
Sbjct: 187 YATIAMAKLVKQAQPRLFDYLLQHRNKHKLNALIDIAEMTPLVHVSGMFGAARSNTSWVA 246
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP NKN +I +L D L D +++R+ L +++ D PI ++H+N+
Sbjct: 247 PLAWHPENKNAVIVCDLAGDISPLLELDADQLRERLYTRRDQLAADQPPAPIKLVHINKC 306
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDL 662
P++ +L N R D N++ + + + +K+ Y +D
Sbjct: 307 PVLAPAKTLLPENAE-RLGIDRQACLNNLQI---LRQHPEVREKVVALYAEAEPFTPAD- 361
Query: 663 ELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
++D +LY+ F S D + I+ P+ L ++ F + +++EL+F YRARN+ TL
Sbjct: 362 --DVDAKLYDGFFSDADKAAMKIILQTKPQNLPALDLAFGDGRMKELLFRYRARNYPNTL 419
Query: 723 SYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI--LNALLMYGK 778
E +RW ++R N + + L++E+L + K+ L AL YGK
Sbjct: 420 DDAEQRRWLQHRREAL-----NAERVQAYILQLEALYNQHEGDKAKMAQLKALFDYGK 472
>gi|422675821|ref|ZP_16735161.1| exonuclease I [Pseudomonas syringae pv. aceris str. M302273]
gi|330973535|gb|EGH73601.1| exonuclease I [Pseudomonas syringae pv. aceris str. M302273]
Length = 476
Score = 332 bits (852), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 170/453 (37%), Positives = 263/453 (58%), Gaps = 15/453 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ WYDYET G+N R DR Q A IRTD LN I P+ L+C+ + D LP P AC+IT
Sbjct: 2 TSSIFWYDYETTGINPRNDRALQMAGIRTDTDLNEIAPPVNLHCQLSDDILPHPVACMIT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITP G+ E F + + PGT GYNT+ FDDE+TR+ F+RN +PY RE
Sbjct: 62 GITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI+V++A Y L P GI WP + +G+ + KLE L+ N + H +AHDALSDV
Sbjct: 122 WQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR P+L++++ +LR K+ V ++ + +P +I+ FS+ +Y+ ++
Sbjct: 181 RATIALARLIREKQPKLYDYLFALRSKQKVQEQVR--LMQPLVHISGRFSAARNYLGVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L D L D ++ L + ++ + +P+ ++H+NR
Sbjct: 239 PLAWHPHNRNALIVCDLHLDHAPLLHEDAEILKRRLYTRHDALGDGELPVPLKLLHINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELN 665
P VI+ L VL S R + D+ A + A+ + N +W K+ Y ++ +
Sbjct: 299 P-VIAPLGVLRSEDQQRLQLDM--AGYQAR-ATQLSENREVWHGKLAAIYGKDDFAASED 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY+ FI +D +R P++L+ + F++ +L EL+F YRARNF +TLS +
Sbjct: 355 PEQQLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSGE 414
Query: 726 ELKRWKKYRISRFYNKK----NNLYNINMFYLE 754
E RW+ + R N + N L++ ++E
Sbjct: 415 EQTRWRDFCQQRLRNPEWGAPNTLHDFTAAWVE 447
>gi|424073580|ref|ZP_17810996.1| exodeoxyribonuclease I [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|407995874|gb|EKG36380.1| exodeoxyribonuclease I [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
Length = 476
Score = 332 bits (852), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 168/453 (37%), Positives = 259/453 (57%), Gaps = 15/453 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ WYDYET G+N R DR Q A IRTD LN I P+ L+C+ + D LP P AC+IT
Sbjct: 2 TSSIFWYDYETTGINPRNDRALQMAGIRTDTDLNEIAPPVNLHCQLSDDILPHPAACMIT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITP G+ E F + + PGT GYNT+ FDDE+TR+ F+RN +PY RE
Sbjct: 62 GITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI+V++A Y L P GI WP + +G+ + KLE L+ N + H +AHDALSDV
Sbjct: 122 WQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR P+L++++ +LR K+ V ++ + +P +I+ FS+ Y+ ++
Sbjct: 181 RATIALARLIREKQPKLYDYLFALRSKQKVQEQVR--LMQPLVHISGRFSAARHYLGVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L D L D ++ L + ++ + +P+ ++H+NR
Sbjct: 239 PLAWHPHNRNALIVCDLHLDHSPLLHEDAETLKRRLYTRHDALGDGELPVPLKLLHINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIW-KKIFLDYKINNSDLELN 665
P VI+ L VL S R + D+ A+ + +W K+ Y ++ +
Sbjct: 299 P-VIAPLGVLRSEDQQRLQLDMTGYQAR---ATQLSERREVWHDKLAAVYGKDDFAASED 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY+ FI +D +R P++L+ + F++ +L EL+F YRARNF +TLS +
Sbjct: 355 PEQQLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSGE 414
Query: 726 ELKRWKKYRISRFYNKK----NNLYNINMFYLE 754
E RW+ + R N + N L++ ++E
Sbjct: 415 EQTRWRDFCQQRLRNPEWGAPNTLHDFTAAWVE 447
>gi|424069200|ref|ZP_17806648.1| exodeoxyribonuclease I [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|407995265|gb|EKG35800.1| exodeoxyribonuclease I [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
Length = 476
Score = 332 bits (852), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 170/453 (37%), Positives = 260/453 (57%), Gaps = 15/453 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ WYDYET G+N R DR Q A IRTD LN I P+ L+C+ + D LP P AC+IT
Sbjct: 2 TSSIFWYDYETTGINPRNDRALQMAGIRTDTDLNEIAPPVNLHCQLSDDILPHPAACMIT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITP G+ E F + + PGT GYNT+ FDDE+TR+ F+RN +PY RE
Sbjct: 62 GITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI+V++A Y L P GI WP + +G+ + KLE L+ N + H +AHDALSDV
Sbjct: 122 WQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR P+L++F+ +LR K+ V ++ + +P +I+ FS+ Y+ ++
Sbjct: 181 RATIALARLIREKQPKLYDFLFALRSKQKVQEQVR--LMQPLVHISGRFSAARHYLGVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L D L D ++ L + ++ + +P+ ++H+NR
Sbjct: 239 PLAWHPHNRNALIVCDLHLDHSPLLHEDAETLKRRLYTRHDALGDGELPVPLKLLHINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIW-KKIFLDYKINNSDLELN 665
P VI+ L VL S R + D+ A + A+ + +W K+ Y ++ +
Sbjct: 299 P-VIAPLGVLRSEDQQRLQLDM--AGYQAR-ATQLSERREVWHDKLAAVYGKDDFAASED 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY+ FI +D +R P++L+ + F++ +L EL+F YRARNF +TLS +
Sbjct: 355 PEQQLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSGE 414
Query: 726 ELKRWKKYRISRFYNKK----NNLYNINMFYLE 754
E RW+ + R N + N L + ++E
Sbjct: 415 EQTRWRDFCQQRLRNPEWGAPNTLQDFTAAWVE 447
>gi|227329384|ref|ZP_03833408.1| exonuclease I [Pectobacterium carotovorum subsp. carotovorum WPP14]
Length = 475
Score = 332 bits (851), Expect = 9e-88, Method: Composition-based stats.
Identities = 163/450 (36%), Positives = 263/450 (58%), Gaps = 16/450 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF +DYETFG + RDRP QFA +RTD+ N I P+++YC+P+ D+LP+P A +IT I
Sbjct: 8 TFFIHDYETFGKHPARDRPAQFAGVRTDMDFNIIGEPLVIYCRPSDDYLPEPEAVMITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L G+ E +FA I + F PGT +GYN I FDDE++R +F+RN +PY W+
Sbjct: 68 TPQVALAKGVNEAEFARQIHEAFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYDPYAYSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++ ++A Y L P GI WP ++G PSF+LEHL+ N ++H++AHDA+SDV A
Sbjct: 128 NGNSRWDLLDALRACYALRPEGIVWPENDDGLPSFRLEHLTKANGIAHEQAHDAMSDVYA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L + P+LF+++ LR K + A I P +P +++ MF + S S + P+
Sbjct: 188 TIAMAKLFKQAQPKLFDYLFPLRNKNKISALIDIPQMKPLVHVSGMFGAARSNTSWVVPL 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L D L D +R+ L ++++ + + +P+ ++H+N+ P
Sbjct: 248 AWHPDNRNAVIMCDLAGDMTPLLELDSEALRERLYTRRDALEANQSAVPLKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF-LDYKINNSDLELNID 667
V++ L R D N+ + + NN + +K+ L + ++D
Sbjct: 307 VLAPANTLRPEDAERLGIDRQRCLDNL---AVLRNNASVREKVVELFADASAFAASDDVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY+ F D + + I++ +P+ L ++ F + +LE L F YRARNF TL +E
Sbjct: 364 LRLYDGFFGDADRMAMKIIQETAPQNLPALDLTFADNRLEPLFFRYRARNFPGTLDDREQ 423
Query: 728 KRWKKYR--------ISRFYNKKNNLYNIN 749
+RW ++R + + ++ NNLY ++
Sbjct: 424 QRWLQHRRAVFTPEHLQSYLSELNNLYQLH 453
>gi|212712795|ref|ZP_03320923.1| hypothetical protein PROVALCAL_03892 [Providencia alcalifaciens DSM
30120]
gi|212684487|gb|EEB44015.1| hypothetical protein PROVALCAL_03892 [Providencia alcalifaciens DSM
30120]
Length = 479
Score = 332 bits (851), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 181/486 (37%), Positives = 279/486 (57%), Gaps = 22/486 (4%)
Query: 302 IDILLHNGNS--TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDF 359
+D++L N ++ TF +DYETFG + DRP QFA +RTD+ N I P + YCKP D+
Sbjct: 1 MDLILKNNHNQPTFFIHDYETFGKHPALDRPAQFAGVRTDLDFNIIGEPEVFYCKPTDDY 60
Query: 360 LPDPRACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFW 419
LP P A +IT ITPQ + NG+ E +FA I + F P T +GYN I FDDE+TR +F+
Sbjct: 61 LPQPEAVMITGITPQIAMANGVNEAEFAKRIHQAFSVPNTCIMGYNNIRFDDEVTRNIFY 120
Query: 420 RNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSH 479
RN +PY W+ SRWDL++ ++A + L P GI WP ++G PS +LEHL+ N +SH
Sbjct: 121 RNFYDPYAYSWQQGNSRWDLLDALRACFALRPEGINWPENDDGLPSLRLEHLTKANGVSH 180
Query: 480 KKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFS 539
+ AHDA+SDV AT+ +A+L++ PR+F++ LR K V I P +++ MF
Sbjct: 181 ENAHDAMSDVLATINMAKLLKQAQPRMFDYFYQLRNKNKVNQLIDIVDMTPLVHVSGMFG 240
Query: 540 SKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IP 597
+ SY+SL+ P+ HP NKN +I +L D L +++R+ L K +D +P
Sbjct: 241 ALRSYVSLVTPLAWHPENKNAVIMCDLSGDMSPLLTLSADELRERLYTPKAELGDDLPVP 300
Query: 598 ISMIHLNRSPIV--ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY 655
I ++H+N+ PI+ I+ L+ + + R D + +N++ + N + K+ +
Sbjct: 301 IKLVHINKCPILAPINTLRTVDAE---RTGLDRDLCMRNLEL---LRKNPDVRNKLIELF 354
Query: 656 KINNSDLELN-IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYR 714
+ E N +D ++YN F S D + I+R +P+ L ++ FE+K+++EL F Y+
Sbjct: 355 SVGQQFEESNDVDSQIYNGFFSPSDRSTMDIIRETAPQNLPALDLSFEDKRMKELFFRYK 414
Query: 715 ARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK---ILN 771
ARN+ TLSY E +RW ++R R Y + L + YL+ LL + D K L
Sbjct: 415 ARNYPSTLSYDEQQRWLQHR--RDYFTEARLTD----YLQQIQLLMGVHHEDEKRCQQLK 468
Query: 772 ALLMYG 777
AL+ Y
Sbjct: 469 ALVNYA 474
>gi|227111961|ref|ZP_03825617.1| exonuclease I [Pectobacterium carotovorum subsp. brasiliensis
PBR1692]
Length = 475
Score = 332 bits (851), Expect = 9e-88, Method: Composition-based stats.
Identities = 171/476 (35%), Positives = 271/476 (56%), Gaps = 21/476 (4%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF +DYETFG + RDRP QFA +RTD+ N I P+++YC+PA D+LP+P A +IT I
Sbjct: 8 TFFIHDYETFGKHPARDRPAQFAGVRTDMDFNIIGEPLVIYCRPADDYLPEPEAVMITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L G+ E +FA I F PGT +GYN I FDDE++R +F+RN +PY W+
Sbjct: 68 TPQVALAKGVNEAEFARQIHDAFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYDPYAYSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++ ++A Y L P GI WP ++G PSF+LEHL+ N +SH++AHDA+SDV A
Sbjct: 128 NGNSRWDLLDALRACYALRPEGIVWPENDDGLPSFRLEHLTKANGISHEQAHDAMSDVYA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L + P+LF ++ LR K + A I P +P +++ MF + S S + P+
Sbjct: 188 TIAMAKLFKQAQPKLFEYLFPLRNKNKISALIDIPQMKPLVHVSGMFGAARSNTSWVVPL 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L D L D +R+ L ++++ + D +P+ ++H+N+ P
Sbjct: 248 AWHPDNRNAVIMCDLAGDMTPLLELDSAALRERLYTRRDALEADQSAVPLKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY----KINNSDLEL 664
V++ L R D N+ S N + +K+ + SD
Sbjct: 307 VLAPANTLRPEDAERLGIDRQRCLDNLALLRS---NASVREKVVELFAEAPAFTASD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
++D LY+ F D + + I++ +P+ L ++ F + +LE L+F YRARNF TL
Sbjct: 361 DVDLRLYDGFFGYADRMAMKIIQETAPQNLPALDLTFADNRLEPLLFRYRARNFPGTLDD 420
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI--LNALLMYGK 778
+E +RW ++R + F ++ + + E+ +L ++ + K+ L AL Y +
Sbjct: 421 REQQRWLQHRRAVFTPER-----LQDYLSELSNLYQQHEDDKEKMAQLKALYAYAQ 471
>gi|290475866|ref|YP_003468758.1| exonuclease I [Xenorhabdus bovienii SS-2004]
gi|289175191|emb|CBJ81994.1| exonuclease I, 3'--> 5'-specific; deoxyribophosphodiesterase
[Xenorhabdus bovienii SS-2004]
Length = 475
Score = 332 bits (851), Expect = 1e-87, Method: Composition-based stats.
Identities = 180/477 (37%), Positives = 276/477 (57%), Gaps = 25/477 (5%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF +DYETFG + DRP QFA IRTD N I++P+++YC PA D+LPDP A +IT I
Sbjct: 8 TFYVHDYETFGKHPALDRPAQFAGIRTDSDFNIIEDPLVVYCLPADDYLPDPEAVMITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L G+ E +FA I + F KP T +GYN I FDDE++R +F+RN +PY W+
Sbjct: 68 TPQLALKKGVNEAEFARQIHEAFSKPNTCIIGYNNIRFDDEVSRNIFYRNFYDPYAYSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
SRWDL++V++A Y L P GI WP +G PSFKLE+L+ N + H +AHDA+SDV A
Sbjct: 128 KGNSRWDLLDVLRACYALRPEGIIWPENEDGLPSFKLENLTKANGVEHTQAHDAMSDVYA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+ ++ PRLF++ LR K+ V +I P +P +++ MF + S ISL+ P+
Sbjct: 188 TIAMAKRVKKAQPRLFDYFFQLRNKQKVSNQIDIPQMKPLVHVSGMFGTLRSNISLIAPL 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSF---KEDIPISMIHLNRSPI 608
HP N+N +I +L D L +++R+ L ++N + +PI ++H+N+ PI
Sbjct: 248 AWHPTNRNAVIMCDLAGDISPLLELSADELRERLYTRRNELQPGQAPVPIKLMHINKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY----KINNSDLEL 664
I+ L + R + + KN+ S N I +K+ + + SD
Sbjct: 308 -IAPENTLRTEDAERVGLNRDQCAKNLAILRS---NPQIREKVVELFSQPEEFPESD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LY+ F S D + I+R +PK L ++ F++ +++ L+F YRARN+ TL+Y
Sbjct: 361 NVDTKLYSGFFSDADKTAMEIIRETAPKNLPALDLTFQDPRIKTLLFRYRARNYPATLNY 420
Query: 725 KELKRWKKYRISRFYNKKNNLY--NINMFYLEIESLL--KKANEHDTKILNALLMYG 777
E +RW Y+++ L NI+ + IE L +++E + L AL+ Y
Sbjct: 421 DEQQRW-------LYHRREILTQENISQYLAAIEQLFVEYQSDEEKCRQLKALVDYA 470
>gi|71280482|ref|YP_268744.1| exonuclease I [Colwellia psychrerythraea 34H]
gi|71146222|gb|AAZ26695.1| exodeoxyribonuclease I [Colwellia psychrerythraea 34H]
Length = 487
Score = 332 bits (850), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 173/463 (37%), Positives = 270/463 (58%), Gaps = 13/463 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+ LW+DYET+G+N + D+P QFA IRTD+ LN I P M YC P D+LP P ACL+T I
Sbjct: 14 SILWHDYETWGINPKFDKPSQFAGIRTDLDLNIIGEPEMFYCTPPVDYLPHPEACLVTGI 73
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+ E +FA+ I +F +P T GYN+I FDDE+TR++ +RN +PY REW+
Sbjct: 74 TPQKAQREGLSEAEFAARIHTLFTQPNTCVAGYNSIRFDDEVTRYLLYRNFYDPYAREWQ 133
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWP-YKNNGKP--SFKLEHLSFVNNLSHKKAHDALSD 488
N SRWD+I++++A Y L P GI WP K +G+ SF+LE L+ N++SH+ AHDA+SD
Sbjct: 134 NGNSRWDIIDMVRACYALRPEGINWPTVKRDGEEVISFRLELLTAANDISHEAAHDAMSD 193
Query: 489 VRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLM 548
V AT+ +A+LI+ P+L++FI +L+ K V I P + + SS H S
Sbjct: 194 VYATIAMAKLIKEKQPKLYDFIFNLKNKNQVKDLINTAEMTPIVHTSSKVSSAHGCTSWF 253
Query: 549 WPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNR 605
P+ HP+NKN +I +L D L +I+ L + + D IP+ +IH+N+
Sbjct: 254 APVSYHPVNKNAVICVDLARDISPLLTLSSEEIKARLYTRYDDLAPDELPIPVKLIHVNK 313
Query: 606 SPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELN 665
P++ +L N R + N+ +F +N D+ +
Sbjct: 314 CPVIAPAKTLLPENAE-RLAIPRDVCLDNLALLRKHAELRDKLSDVFATSDFDNDDV--D 370
Query: 666 IDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
++ LY +F S D ++ ILR +SP++L+N F F++++L L+F YRARN+ TLS
Sbjct: 371 AEQALYGGSFFSHSDKAQMDILRGLSPEQLANHPFQFQDERLSVLLFRYRARNYPYTLST 430
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDT 767
+E ++W++Y ++ + +++ F ++IE+L A+EH+T
Sbjct: 431 EEQQKWQQYCQNKLQYGGKGILSLDEFMMKIENL---AHEHET 470
>gi|282600282|ref|ZP_05973706.2| exodeoxyribonuclease I [Providencia rustigianii DSM 4541]
gi|282565948|gb|EFB71483.1| exodeoxyribonuclease I [Providencia rustigianii DSM 4541]
Length = 479
Score = 332 bits (850), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 174/481 (36%), Positives = 273/481 (56%), Gaps = 12/481 (2%)
Query: 302 IDILLHN--GNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDF 359
+D++L N TF +DYETFG + DRP QFA +RTD+ N ID P + YCKP D+
Sbjct: 1 MDLILKNKHNQPTFFIHDYETFGKHPALDRPAQFAGVRTDLDFNIIDEPEVFYCKPTDDY 60
Query: 360 LPDPRACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFW 419
LP P A +IT ITPQ NG+ E +FA I + F P T +GYN I FDDE+TR +F+
Sbjct: 61 LPQPEAVMITGITPQIAQANGVNEAEFAKRIHQSFSTPNTCIMGYNNIRFDDEVTRNIFY 120
Query: 420 RNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSH 479
RN +PY W+ SRWDL++ ++A + L P GI WP ++G PS +LEHL+ N ++H
Sbjct: 121 RNFYDPYAYSWQQGNSRWDLLDALRACFALRPEGINWPENDDGLPSLRLEHLTKANGVAH 180
Query: 480 KKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFS 539
+ AHDA+SDV AT+ +A+L++ PR+F++ LR K V I P +++ MF
Sbjct: 181 ENAHDAMSDVLATINMAKLLKQAQPRMFDYFYQLRNKNKVSQLIDIVEMTPLVHVSGMFG 240
Query: 540 SKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIP 597
+ SY+SL+ P+ HP NKN +I +L D L + +++R+ L K + +P
Sbjct: 241 ALRSYVSLVAPLAWHPDNKNAVIMCDLSADMSPLLTLNADELRERLYTPKAELGDALPVP 300
Query: 598 ISMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKI 657
I ++H+N+ PI+ K L + R D + +N++ + N + K+ + +
Sbjct: 301 IKLVHINKCPILAPE-KTLRTVDAERTGIDRDLCLRNLEI---LRKNPDVRNKLIEIFSV 356
Query: 658 NNSDLELN-IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRAR 716
+ E N +D ++Y+ F S D + I+R +P+ L ++ FE+K+++EL F Y+AR
Sbjct: 357 DQQFEESNDVDRQIYSGFFSPSDRSTMDIIRETAPQNLPGLDLSFEDKRMKELFFRYKAR 416
Query: 717 NFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMY 776
N+ TLSY E +RW ++R F + Y M +++ + +E + L AL+ Y
Sbjct: 417 NYPATLSYDEQQRWLQHRRDYFTEARLTEY---MQQIQLLMDIHHEDEKRCQQLKALVSY 473
Query: 777 G 777
Sbjct: 474 A 474
>gi|403058208|ref|YP_006646425.1| hypothetical protein PCC21_017690 [Pectobacterium carotovorum
subsp. carotovorum PCC21]
gi|402805534|gb|AFR03172.1| hypothetical protein PCC21_017690 [Pectobacterium carotovorum
subsp. carotovorum PCC21]
Length = 475
Score = 332 bits (850), Expect = 1e-87, Method: Composition-based stats.
Identities = 167/453 (36%), Positives = 261/453 (57%), Gaps = 22/453 (4%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF +DYETFG + RDRP QFA +RTD+ N I P+++YC+PA D+LP+P A +IT I
Sbjct: 8 TFFIHDYETFGKHPARDRPAQFAGVRTDMDFNIIGEPLVIYCRPADDYLPEPEAVMITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L G+ E +FA I F PGT +GYN I FDDE++R +F+RN +PY W+
Sbjct: 68 TPQVALAKGVNEAEFARQIHDAFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYDPYAYSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++ ++A Y L P GI WP ++G PSF+LEHL+ N +SH++AHDA+SDV A
Sbjct: 128 NGNSRWDLLDALRACYALRPEGIVWPENDDGLPSFRLEHLTKANGISHEQAHDAMSDVYA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L + P+LF ++ LR K + A I P +P +++ MF + S S + P+
Sbjct: 188 TIAMAKLFKQAQPKLFEYLFPLRNKNKISALIDIPQMKPLVHVSGMFGAARSNTSWVVPL 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L D L D +R+ L ++++ + D +P+ ++H+N+ P
Sbjct: 248 AWHPDNRNAVIMCDLAGDMTPLLELDSAALRERLYTRRDALEADQSAVPLKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY----KINNSDLEL 664
V++ L R D N+ S N + +K+ + SD
Sbjct: 307 VLAPANTLRPEDAERLGIDRQRCLDNLALLRS---NASVREKVVELFAEAPAFTASD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
++D LY+ F D + + I++ +P+ L ++ F + +LE L+F YRARNF TL
Sbjct: 361 DVDLRLYDGFFGDADRMAMKIIQETAPQNLPALDLTFADNRLEPLLFRYRARNFPGTLDD 420
Query: 725 KELKRWKKYRISRFYNKK--------NNLYNIN 749
+E +RW ++R + F ++ +NLY ++
Sbjct: 421 REQQRWLQHRRAVFTPERLQDYLSELSNLYQLH 453
>gi|322514439|ref|ZP_08067481.1| exodeoxyribonuclease I [Actinobacillus ureae ATCC 25976]
gi|322119646|gb|EFX91708.1| exodeoxyribonuclease I [Actinobacillus ureae ATCC 25976]
Length = 515
Score = 332 bits (850), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 171/455 (37%), Positives = 265/455 (58%), Gaps = 18/455 (3%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
N N TF +YDYE+FG++ DRP QFA IRTD N I +P+M YCK PD+LP P A +
Sbjct: 2 NKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGDPVMFYCKQTPDYLPSPEAVM 61
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
+T ITPQ C G+ E +FA+ F +P T +GYN I +DDE+TR+ F+RN ++PYE
Sbjct: 62 VTGITPQQCNAEGVSEPEFAARTHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFVDPYE 121
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
WKN SRWDL+++++A Y L P GI W NG P+FKLE+L+ N ++H+ AHDA++
Sbjct: 122 YSWKNGNSRWDLLDLVRACYALRPDGIEWVTDENGVPNFKLENLTKANGIAHENAHDAMA 181
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ +A+LI+ P+LF F R KK + I P +++ MF + +
Sbjct: 182 DVYATIAMAKLIKQKQPKLFQFFFENRGKKEIKKMIDTGEMTPLVHVSGMFGNARGNTAW 241
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
+ PI HP N+N ++ +L L + ++R +L KK E+ +P+ +H+N
Sbjct: 242 IAPIAWHPTNQNQVLCCDLSGYVSALLTDSAEELRTHLYTKKEELPENVAPVPLKGVHIN 301
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYKINNSD 661
R PI I+ KVL R D +N+K + N + + +K IF++ + + +
Sbjct: 302 RCPI-IAPAKVLLPENAARLGIDRERCLENLKLLKA--NKSLVREKVTEIFMEER--SFE 356
Query: 662 LELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
N++ LY+ F S D +AILR++ P++L + F ++++E L+F YRAR++ ET
Sbjct: 357 ASANVETTLYDGFFSPADKNNMAILRTLQPQELEHHGLQFADERVEALLFHYRARHYPET 416
Query: 722 LSYKELKRWKKY-------RISRFYNKKNNLYNIN 749
LS E +W+KY + ++F +NL+ I+
Sbjct: 417 LSRAEQIKWQKYCHQQIDAKSAQFAESIDNLFQIH 451
>gi|89095382|ref|ZP_01168297.1| exodeoxyribonuclease I [Neptuniibacter caesariensis]
gi|89080350|gb|EAR59607.1| exodeoxyribonuclease I [Oceanospirillum sp. MED92]
Length = 488
Score = 332 bits (850), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 166/479 (34%), Positives = 274/479 (57%), Gaps = 10/479 (2%)
Query: 306 LHNGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRA 365
+ N TF W+DYETFG + +RD P QFA IRTD LN I+ P+M+YCKP+ D LP P A
Sbjct: 1 MANQPLTFYWHDYETFGADPKRDWPVQFAGIRTDEHLNVIEEPLMVYCKPSDDQLPYPEA 60
Query: 366 CLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINP 425
CLIT ITPQ ++ G+ E F + I + +PGT VGYN+I FDDE+TR+ +RN +P
Sbjct: 61 CLITGITPQKAMDEGLCEADFFAKIHEQLARPGTCGVGYNSIRFDDEVTRYGLYRNFFDP 120
Query: 426 YEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDA 485
Y REW+N CSRWD+I++++ L P GI WP +G PS +LE L+ N + H AHDA
Sbjct: 121 YAREWQNGCSRWDIIDMLRLTRTLRPEGIVWPKYEDGTPSLRLEDLTVANGIDHGHAHDA 180
Query: 486 LSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYI 545
LSDV AT+ +A+L+R P+LFN++L+ R K+ + + + +P +I+ ++ ++
Sbjct: 181 LSDVYATIEMAKLVREKQPKLFNYVLNNRSKQSIQSLLDTQSFKPVLHISSRYAIEYGNT 240
Query: 546 SLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDIP---ISMIH 602
+++ PI HP+NKN +I W+L +P+ + ++R L + + P + +H
Sbjct: 241 AVVAPIATHPVNKNGVIVWDLRFNPEPLMQLSAEELRQLLYTPRAELDDSDPRIALKQVH 300
Query: 603 LNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL 662
+N+ PI I+ ++SS R + + + +++ S T +K+ Y + D
Sbjct: 301 INKCPI-IAPAGMISSEEAARLQINGDQCRAHLQMLRSY---TGFREKLADIYSESPFDT 356
Query: 663 ELNIDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
+ + D+ LY+ F + D + +R P +L+ ++ F++ +LEE++ Y+ARN
Sbjct: 357 DSDPDQMLYSGGFFTPSDRQLMDQVRESGPDQLAELDLPFQDPRLEEMLLRYKARNCPHV 416
Query: 722 LSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKA--NEHDTKILNALLMYGK 778
L++++ +W+ YR + + + FY + L +A +E IL L +Y +
Sbjct: 417 LNHEDQMQWETYRQRKLLKGEGGHLTMEKFYQRLNELYAEAETDEKRKHILEELAVYAE 475
>gi|190149982|ref|YP_001968507.1| exodeoxyribonuclease I [Actinobacillus pleuropneumoniae serovar 7
str. AP76]
gi|307263310|ref|ZP_07544928.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 13 str.
N273]
gi|189915113|gb|ACE61365.1| exodeoxyribonuclease I [Actinobacillus pleuropneumoniae serovar 7
str. AP76]
gi|306871372|gb|EFN03098.1| Exonuclease I [Actinobacillus pleuropneumoniae serovar 13 str.
N273]
Length = 514
Score = 332 bits (850), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 168/432 (38%), Positives = 255/432 (59%), Gaps = 11/432 (2%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
N N TF +YDYE+FG++ DRP QFA IRTD N I P+M YCK PD+LP P A +
Sbjct: 2 NKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVM 61
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
+T ITPQ C G+PE +FA+ I F +P T +GYN I +DDE+TR+ F+RN +PYE
Sbjct: 62 VTGITPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYE 121
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
WKN SRWDL+++++A Y L P GI W NG P+FKLE+L+ N ++H+ AHDA++
Sbjct: 122 YSWKNGNSRWDLLDLVRACYALRPDGIEWVIDENGVPNFKLENLTKANGIAHENAHDAMA 181
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ + +LI+ P+LF F R KK + I P +++ MF + + +
Sbjct: 182 DVYATIAMVKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTAW 241
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
+ PI HP N+N ++ +L D L + ++R L KK E +P+ +H+N
Sbjct: 242 IAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHIN 301
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYKINNSD 661
R PI I+ KVL R D +N+K + N + + +K IF++ + + +
Sbjct: 302 RCPI-IAPAKVLLPENAARLGIDRERCLENLKLLKA--NKSLVREKVTEIFMEER--SFE 356
Query: 662 LELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
N++ LY+ F S D ++ILR++ P++L++ F ++++E L+F YRAR++ ET
Sbjct: 357 PSANVETTLYDGFFSPADKNNMSILRTLPPQELAHHGLQFADERVEALLFHYRARHYPET 416
Query: 722 LSYKELKRWKKY 733
LS E +W+KY
Sbjct: 417 LSRAEQIKWQKY 428
>gi|333908312|ref|YP_004481898.1| exodeoxyribonuclease I [Marinomonas posidonica IVIA-Po-181]
gi|333478318|gb|AEF54979.1| Exodeoxyribonuclease I [Marinomonas posidonica IVIA-Po-181]
Length = 484
Score = 331 bits (849), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 156/433 (36%), Positives = 257/433 (59%), Gaps = 6/433 (1%)
Query: 309 GNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLI 368
G ++F W+D+ET G + RDRP QFA IRTD+ N I P+M YC+ A D LP P ACL+
Sbjct: 5 GPTSFFWFDFETTGTDPARDRPMQFAGIRTDLNFNPIGEPVMFYCRLAEDTLPQPEACLL 64
Query: 369 TKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYER 428
T I+PQ +G+ E +F +E PGT ++GYNTI FDDE+ R F+RN I+PY R
Sbjct: 65 TGISPQEANRDGLCEAEFMQAVEAELSVPGTCALGYNTIRFDDEVVRHGFYRNFIDPYAR 124
Query: 429 EWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSD 488
EW+NNCSRWD+I++++ Y + P GI WP K +G+ S KLE L+ NN++H++AHDALSD
Sbjct: 125 EWQNNCSRWDMIDLVRMTYAMRPDGIVWPKKEDGQVSMKLEDLTKANNIAHEQAHDALSD 184
Query: 489 VRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLM 548
V T+ +A+LI++ P+LF + +R+K + I +PF +I+ MF Y + +
Sbjct: 185 VYGTIEIAKLIQDKQPKLFAYYFKMRQKHELQQFIDPVRMKPFLHISGMFGQARHYAAFV 244
Query: 549 WPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRS 606
P+ HP NKN +I W+L+ D + L + +I+ + +++ + +P+ +IH NR+
Sbjct: 245 VPVAPHPTNKNGIIVWDLMEDAQPLLELSVKEIQHRVFTRQDELGDISRLPLKVIHYNRA 304
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNI 666
P V + ++ R D + N+ + I +T + K+ + ++ +
Sbjct: 305 PAVAPATFLKDEQIVNRLGLDGDKCRHNL---AMIKQHTGLAAKLSDVFVQEERTIDKDP 361
Query: 667 DEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
D LY+ F S++D ++ +RS + L+ ++ F++++L E++ Y RN+ E L+ +
Sbjct: 362 DLMLYSGGFFSREDKTRMDTIRSTPAEHLTELSLSFDDRRLPEMLTRYIGRNYPEQLTEQ 421
Query: 726 ELKRWKKYRISRF 738
+ + W++YR R
Sbjct: 422 QRQEWEEYRQIRL 434
>gi|429330496|ref|ZP_19211286.1| exonuclease I [Pseudomonas putida CSV86]
gi|428764843|gb|EKX86968.1| exonuclease I [Pseudomonas putida CSV86]
Length = 476
Score = 331 bits (849), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 166/468 (35%), Positives = 262/468 (55%), Gaps = 12/468 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ W+DYET G++ R DRP Q A +RTD+ LN I+ P+ L+C+P+ D LP P ACLIT
Sbjct: 2 TSSIFWHDYETTGIDPRCDRPLQVAGVRTDLELNEIEAPVNLFCQPSDDILPHPAACLIT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITP +G+ E F + + +PGT GYNT+ FDDE+TR+ +RN +PY RE
Sbjct: 62 GITPAQLARDGLAEAGFMTRVHAELARPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI+ ++ Y L P GI WP + NG+ S +LE LS N + H +AH+ALSDV
Sbjct: 122 WQGGNSRWDLIDTVRTAYALRPEGIEWP-QVNGQVSLRLELLSAANGIHHGQAHEALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR PRL+ ++ LR K VL +I + +P +I+ FS+ +Y+ ++
Sbjct: 181 RATIALARLIRQKQPRLYEWLFELRSKHKVLDQIR--LLQPLVHISGRFSAARNYLGVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L D L D +R L ++ E +P+ ++H+NR
Sbjct: 239 PLAWHPANRNALIVCDLHQDIAPLLKEDSEVLRQRLYMRREEMPEGQLPVPLKLLHINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELN 665
P V++ L VL R D++ + ++ ++ W+ K+ Y+ +
Sbjct: 299 P-VVAPLAVLRKQDQLRLGLDMS---ELLRRGEQLIAVQEQWENKLTSIYEGREFAPGED 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY+ F +D +R P++L++ + F++ +L EL+F YRARNF +LS
Sbjct: 355 PEQQLYDGFFGDRDRRLCEQVRMADPQQLASGQWMFDDPRLTELLFRYRARNFPASLSET 414
Query: 726 ELKRWKKYRISRFYNKKNNL-YNINMFYLEIESLLKKANEHDTKILNA 772
E +W+ + R ++ + + F ++ L A+ +L A
Sbjct: 415 EQVQWRTFCQQRLNDEAMGAPHTLAAFETALQEALATADGAQRALLEA 462
>gi|50121489|ref|YP_050656.1| exonuclease I [Pectobacterium atrosepticum SCRI1043]
gi|49612015|emb|CAG75464.1| exodeoxyribonuclease I [Pectobacterium atrosepticum SCRI1043]
Length = 475
Score = 331 bits (849), Expect = 2e-87, Method: Composition-based stats.
Identities = 163/439 (37%), Positives = 257/439 (58%), Gaps = 8/439 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF +DYETFG + RDRP QFA +RTD+ N I P+++YC+P D+LP+P A +IT I
Sbjct: 8 TFFIHDYETFGKHPARDRPAQFAGVRTDMDFNIIGEPLVIYCRPTDDYLPEPEAVMITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L G+ E +FA I F PGT +GYN I FDDE++R +F+RN +PY W+
Sbjct: 68 TPQIALAKGVNEAEFARQIHDAFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYDPYAYSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N+ SRWDL++ ++A Y L P GI WP ++G PSF+LEHL+ N ++H++AHDA+SDV A
Sbjct: 128 NSNSRWDLLDALRACYALRPEGIVWPENDDGLPSFRLEHLTKANGIAHEQAHDAMSDVYA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L + P+LF ++ LR K + A I P +P +++ MF + S S + P+
Sbjct: 188 TIAMAKLFKQAQPKLFEYLFPLRNKNKISALIDIPQMKPLVHVSGMFGAARSNTSWIVPL 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L D L D + +R+ L ++++ D +P+ ++H+N+ P
Sbjct: 248 AWHPDNRNAVIMCDLAGDMTPLLELDSDALRERLYTRRDALTADQSAVPLKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF-LDYKINNSDLELNID 667
V++ L R D N+ + + NN I +K+ L ++ ++D
Sbjct: 307 VLAPANTLRPEDAARLGIDRQRCLDNL---ALLRNNADIREKVVALFAEVPAFAASDDVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY+ F D + + I++ +P+ L ++ F + +LE L F YRARNF TL +E
Sbjct: 364 LRLYDGFFGDADRMAMKIIQETAPQNLPALDLTFADNRLEPLFFRYRARNFPGTLDDREQ 423
Query: 728 KRWKKYRISRFYNKKNNLY 746
+RW ++R + F ++ Y
Sbjct: 424 QRWLQHRRAVFTPERLQSY 442
>gi|383189532|ref|YP_005199660.1| exonuclease I [Rahnella aquatilis CIP 78.65 = ATCC 33071]
gi|371587790|gb|AEX51520.1| exonuclease I [Rahnella aquatilis CIP 78.65 = ATCC 33071]
Length = 526
Score = 331 bits (849), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 170/476 (35%), Positives = 272/476 (57%), Gaps = 21/476 (4%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYETFG N DRP QFA +RTD N I+ P+++YC+P+ D+LP+P A +IT I
Sbjct: 59 TFYFHDYETFGKNPALDRPAQFAGVRTDEDFNIIEEPLVIYCRPSDDYLPEPEAVMITGI 118
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L G+ E +F + I + F PGT VGYN I FDDE++R + +RN +PY W+
Sbjct: 119 TPQIALERGVIEAEFTAQIHQAFSVPGTCIVGYNNIRFDDEVSRNILYRNFYDPYAYSWQ 178
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H+ AHDA++DV A
Sbjct: 179 NGNSRWDLLDVMRACYALRPEGINWPENDDGFPSFRLEHLTKANGIEHENAHDAMADVYA 238
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF+F+L R K + I P P +++ MF + + + P+
Sbjct: 239 TIAMAKLVKQAQPRLFSFLLEHRSKHKLNILIDIPAMGPLVHVSGMFGAARGNTAWVAPL 298
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN +I +L D L + +++R+ L ++++ + +PI ++H+N+ P+
Sbjct: 299 AWHPENKNAVIMCDLAGDMTTLLDLNPDEMRERLYSRRDTLQSGQSPLPIKLVHINKCPV 358
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
+ +L N R D +N++ + N + +K+ + SD
Sbjct: 359 LAPAKTLLPENAE-RLGIDRQRCLENLQL---LRQNPQVREKVVTLFAEAEPFTPSD--- 411
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
++D LY+ F S D + I+ P+ L ++ F + ++E L+F +RARN+ TL+
Sbjct: 412 DVDARLYDGFFSDADRAAMRIILETRPENLPALDLTFNDSRIEPLLFRFRARNYPATLTD 471
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESL--LKKANEHDTKILNALLMYGK 778
E KRW +R ++ +++ + LE+ESL L + N +L AL YGK
Sbjct: 472 AEQKRWMAHRQTKLTDER-----FQNYALELESLYNLHEGNVEKMALLKALFEYGK 522
>gi|416288609|ref|ZP_11649284.1| Exodeoxyribonuclease I [Shigella boydii ATCC 9905]
gi|320177928|gb|EFW52912.1| Exodeoxyribonuclease I [Shigella boydii ATCC 9905]
Length = 475
Score = 331 bits (848), Expect = 2e-87, Method: Composition-based stats.
Identities = 169/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R++L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLREHLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R D N+K + N + K+ + SD
Sbjct: 308 VLAQANTLRPEDAERLGIDRQHCLDNLKV---LRENPQVRDKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW +YR F
Sbjct: 422 AEQQRWLEYRRQVF 435
>gi|304413420|ref|ZP_07394893.1| exonuclease I [Candidatus Regiella insecticola LSR1]
gi|304284263|gb|EFL92656.1| exonuclease I [Candidatus Regiella insecticola LSR1]
Length = 475
Score = 331 bits (848), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 183/472 (38%), Positives = 272/472 (57%), Gaps = 16/472 (3%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STF +DYETFG N DRP QFA +RTD N ID+P+++YC PA D+LP P A LIT
Sbjct: 8 STFYVHDYETFGQNPALDRPVQFAGVRTDDDFNIIDDPLVIYCAPANDYLPQPEAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ+ L +G+ E +F I + F GT ++GYN I FDDE++R +F+RN +PY W
Sbjct: 68 ITPQYALKHGVNEAEFCQKIHQQFSVAGTCTLGYNNIRFDDEVSRNIFYRNFYDPYAYNW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+N SRWDL++V++A Y L P GI WP +G PSFKLEHL+ N + H KAHDA+SDV
Sbjct: 128 QNGNSRWDLLDVVRACYALRPEGINWPKNADGLPSFKLEHLAKANGIQHLKAHDAMSDVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LA+L++ PRLF + R K + A I P +++ MF + S ISL+ P
Sbjct: 188 ATIELAKLVKQAQPRLFKYFYHHRSKHKIKALIDIENMTPLVHVSGMFGVRRSNISLVAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP NKN +I +L D L D+N +R++L K+ IP+ ++H+N+ P
Sbjct: 248 LAWHPENKNAVIVCDLAADISPLSL-DVNTLREHLYTPKDPLNPQQITIPLKLVHINKCP 306
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL-NI 666
I ++ + R K DL ++ S+ N I +K+ +K + ++ N+
Sbjct: 307 I-LAPVNTWREKETKRLKIDLQYCLNQLE---SLRQNPQIKEKVNALFKQMTARPKVNNV 362
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
D +LY F + D+ + ++ SP+ L +NFCF++ +LE L+F +RARN+ TL E
Sbjct: 363 DAQLYCGFFNDTDHNTIKKIQQTSPQNLPALNFCFQDPRLETLLFRFRARNYHNTLDDTE 422
Query: 727 LKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKA--NEHDTKILNALLMY 776
+R +YR +K I + L++ L + NE + +L +LL Y
Sbjct: 423 QRRLLEYRKEVLSPEK-----IKEYILQLNQLCYQYQNNEEKSSLLKSLLDY 469
>gi|395760857|ref|ZP_10441526.1| DNA polymerase I [Janthinobacterium lividum PAMC 25724]
Length = 916
Score = 331 bits (848), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 148/278 (53%), Positives = 209/278 (75%), Gaps = 6/278 (2%)
Query: 771 NALLMYGKIDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFD 830
N LL+ +DGSS +YRAF+ALPD+R+ D +P GA++G + MLR+L +Y A YIAC+FD
Sbjct: 3 NTLLL---VDGSSYLYRAFHALPDLRSPDGYPTGAMHGMVNMLRRLRADYPAAYIACVFD 59
Query: 831 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 890
AKGK FR+ +YP YKATR MP +L LQI IH+ V+A+GWPIL++ GVEADDVIGTLA
Sbjct: 60 AKGKTFRDDMYPEYKATRASMPDDLRLQIEPIHEAVRAMGWPILMVDGVEADDVIGTLAV 119
Query: 891 QAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSL 948
QA + V++ST DKD+AQLV++++ LIN +N+ D ++++FGV P++I+DY SL
Sbjct: 120 QAAAA-GMNVVVSTGDKDLAQLVNSQVTLINTMSNEKLDEAAVLAKFGVPPQRIIDYLSL 178
Query: 949 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI 1008
IGD DN+PGV K GPKTAVK L Y+SLE +I NA + G +G+NLR AL WLP+ + +
Sbjct: 179 IGDTVDNVPGVSKCGPKTAVKWLTLYDSLEGVIENAAQVGGAVGENLRTALPWLPQARAL 238
Query: 1009 LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
+T+KTDCDL++++ +I +SL + +D++ L+ FN+Y
Sbjct: 239 ITVKTDCDLSQHMTTIADSLAAKHEDKEALLAFFNRYG 276
>gi|90022039|ref|YP_527866.1| exonuclease I [Saccharophagus degradans 2-40]
gi|89951639|gb|ABD81654.1| Exodeoxyribonuclease I subunit C [Saccharophagus degradans 2-40]
Length = 485
Score = 331 bits (848), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 167/443 (37%), Positives = 254/443 (57%), Gaps = 13/443 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF W+DYET+G N DRP QFA +RTD+ LN I P+++YCKP D P+P ACL+T +
Sbjct: 4 TFYWHDYETWGANPAVDRPSQFAGVRTDMDLNIIGEPLVIYCKPPEDIWPNPEACLVTGL 63
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L G+ E +F I + KPGT VGYN+I FDDE+TR+ +RN +PYEREW+
Sbjct: 64 TPQETLAKGVTEREFIKQIHRELAKPGTCGVGYNSIRFDDEVTRYTLYRNYFDPYEREWR 123
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD+I++++ Y L P GI WP +GKPSF+LE+L+ VN + H AHDA SDV A
Sbjct: 124 NGNSRWDIIDMVRLCYALRPEGIEWPVV-DGKPSFRLENLTKVNGIVHASAHDAYSDVEA 182
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LARL+R P L+ +++ R K+ + +P +I+ FSS++ L+ P+
Sbjct: 183 TIKLARLVREKQPALYEHVVNNRGKREATKLLDVASKKPMLHISSKFSSENGCAGLIAPL 242
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLNRSPI 608
HP+NKN +I NL DPK ++IR + E + P+ +IHLN+ PI
Sbjct: 243 AYHPVNKNAVIVINLNADPKPLFDLSADEIRARIFTATKDLPEGVERLPVKLIHLNKCPI 302
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCAS--SILNNTYIWKKIFLDYKINNSDLELNI 666
+++ K+L R D +C S L I +K+ + N + L+
Sbjct: 303 LLTP-KILDEQAQARLGID------KAQCEKHWSQLQRMDITEKLQQVFATNEFEGSLDP 355
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+ LY+ F+ D +A +R + +LS NF F +K+L +++ Y+ARNF + L+ E
Sbjct: 356 ERMLYDGFVGDTDKYVMADVRKANGAELSKHNFVFSDKRLNDMLLRYKARNFPDDLTDSE 415
Query: 727 LKRWKKYRISRFYNKKNNLYNIN 749
W+++ R + + + +++
Sbjct: 416 RAEWREFVSQRLKDGGDGVLSLS 438
>gi|146281544|ref|YP_001171697.1| exonuclease I [Pseudomonas stutzeri A1501]
gi|145569749|gb|ABP78855.1| exodeoxyribonuclease I [Pseudomonas stutzeri A1501]
Length = 477
Score = 331 bits (848), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 167/479 (34%), Positives = 268/479 (55%), Gaps = 18/479 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+ WYD+ET G++ RDRP Q A IRT+ L I P+ +YC+P D LP P ACL+T I
Sbjct: 4 SIFWYDFETTGISPSRDRPLQVAGIRTNEALEEIGEPLNIYCRPGDDILPHPAACLVTGI 63
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TP G+ E +F + + PGT GYN++ FDDE+TR+ +RN +PY REW+
Sbjct: 64 TPAVLQQKGMCEAQFVHHLHRELSTPGTCGAGYNSLRFDDEVTRYSLYRNFYDPYAREWQ 123
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
SRWDLI++++ Y L P GI WP +++G+ + KLE LS N L H AHDALSDVRA
Sbjct: 124 GGNSRWDLIDLVRTAYALRPEGIGWP-EDDGRVTLKLERLSAANGLEHLNAHDALSDVRA 182
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LARLIR PRL+ ++ +LR+K VL ++ + P +++ FS+ ++S++ P+
Sbjct: 183 TISLARLIRERQPRLYEYLFNLRRKHAVLEQVT--LLEPLVHVSGRFSAARHFLSVVLPL 240
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N LI +L + + L +R L +++ E +P+ ++H+N+ P
Sbjct: 241 AWHPRNRNALIVCDLQAEVRPLWLESAETLRQRLYTRRDELAEGELPVPLKLVHINKCP- 299
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK----KIFLDYKINNSDLEL 664
V++ LKVL + R + DL + A ++ ++W +++ + D
Sbjct: 300 VLAPLKVLREADIQRLELDLPACHER---ADALREQRHVWSPKLDEVYREEGFIGVD--- 353
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
+ +++LY+ F+ ++D +R M+P +L+ F++ +LEEL+F YRARNF E LS
Sbjct: 354 DPEQQLYDGFLGERDRRLCDRIREMAPAELARQQCHFDDVRLEELLFRYRARNFPEALSA 413
Query: 725 KELKRWKKYRISRFYNKKNNLYN-INMFYLEIESLLKKANEHDTKILNALLMYGKIDGS 782
E RW+++ R + N + F +I+ + A ++L YG+ G
Sbjct: 414 VERVRWQRFCQQRLSGEIAGAPNTLAQFEADIQQFMLTAAPAQQQLLQQWREYGRALGE 472
>gi|357405578|ref|YP_004917502.1| exodeoxyribonuclease I [Methylomicrobium alcaliphilum 20Z]
gi|351718243|emb|CCE23910.1| Exodeoxyribonuclease I [Methylomicrobium alcaliphilum 20Z]
Length = 484
Score = 330 bits (846), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 172/473 (36%), Positives = 270/473 (57%), Gaps = 9/473 (1%)
Query: 309 GNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLI 368
TF W+DYETFG++ R DRP QFA IRTD N + +P+++YCKPA D LPDP ACLI
Sbjct: 2 AGRTFYWHDYETFGIDPRLDRPVQFAGIRTDYDFNVLGDPLVIYCKPALDCLPDPVACLI 61
Query: 369 TKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYER 428
T ITPQ GI E +F I + +P T ++GYN I FDDE+TR +RNL +PY+R
Sbjct: 62 TGITPQIAEAKGICEAEFIEAISREISQPNTCTLGYNNIRFDDEVTRNTLYRNLYDPYQR 121
Query: 429 EWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSD 488
EW+N SRWDLI+V++A Y L P GI WP G +F+LE L+ N + H AHDALSD
Sbjct: 122 EWQNGNSRWDLIDVVRAAYALRPGGIEWPVNEEGLVTFRLEELTKANGIEHAMAHDALSD 181
Query: 489 VRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLM 548
V AT+ +A+L+R+ P+L+ F+ R K + +P +I+ ++ ++ ++++
Sbjct: 182 VYATIAVAKLVRDTQPKLYKFLFDNRVKSAANRLLQTGSFKPVVHISGKYAVRNHCMAVV 241
Query: 549 WPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNR 605
PIC HP N N ++ ++L DP+ L +++I+ + E IP+ +H+N+
Sbjct: 242 LPICRHPSNSNGVVVYDLSSDPEILLNLSVDEIKQRIFTATKDLPEGVERIPLKTVHVNK 301
Query: 606 SPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELN 665
P V++ + V+ + R D++ ++ I I N++ I KI ++ + + + +
Sbjct: 302 CP-VLAPIAVIRPDDAARLNLDIDRCYRYI---DKIRNDSNILDKIAQVFETDFPESDAD 357
Query: 666 IDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
D +Y+ F S D + + P+ L+N+ F + +L E+ F YRARN+ ETL+
Sbjct: 358 PDLMIYSGGFFSDSDKKAMEKVHKTLPENLANLRLNFSDPRLPEMFFRYRARNYPETLNE 417
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYG 777
+E RW K R +N IN ++ +++ L+ + D IL+AL Y
Sbjct: 418 EERTRWMKDCAERLTGAVSNCMTINEYFSKVQE-LQSDSSADPTILSALREYA 469
>gi|422017688|ref|ZP_16364251.1| exonuclease I [Providencia alcalifaciens Dmel2]
gi|414105281|gb|EKT66840.1| exonuclease I [Providencia alcalifaciens Dmel2]
Length = 475
Score = 330 bits (846), Expect = 4e-87, Method: Composition-based stats.
Identities = 180/479 (37%), Positives = 273/479 (56%), Gaps = 21/479 (4%)
Query: 307 HNGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRAC 366
HN TF +DYETFG + DRP QFA +RTD+ N I P + YCKP D+LP P A
Sbjct: 5 HN-QPTFFIHDYETFGKHPALDRPAQFAGVRTDLDFNIIGEPEVFYCKPTDDYLPQPEAV 63
Query: 367 LITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPY 426
+IT ITPQ + NG+ E +FA I + F P T +GYN I FDDE+TR +F+RN +PY
Sbjct: 64 MITGITPQIAMANGVNEAEFAKRIHQAFSVPNTCIMGYNNIRFDDEVTRNIFYRNFYDPY 123
Query: 427 EREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDAL 486
W+ SRWDL++ ++A + L P GI WP ++G PS +LEHL+ N +SH+ AHDA+
Sbjct: 124 AYSWQQGNSRWDLLDALRACFALRPEGINWPENDDGLPSLRLEHLTKANGVSHENAHDAM 183
Query: 487 SDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYIS 546
SDV AT+ +A+L++ PR+F++ LR K V I P +++ MF + SY+S
Sbjct: 184 SDVLATINMAKLLKQAQPRMFDYFYQLRNKNKVNQLIDIVDMTPLVHVSGMFGALRSYVS 243
Query: 547 LMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLN 604
L+ P+ HP NKN +I +L D L +++R+ L K +D +PI ++H+N
Sbjct: 244 LVTPLAWHPENKNAVIMCDLSGDMSPLLTLSADELRERLYTPKAELGDDLPVPIKLVHIN 303
Query: 605 RSPIV--ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL 662
+ PI+ I+ L+ + + R D + +N++ + N + K+ + +
Sbjct: 304 KCPILAPINTLRTVDAE---RTGLDRDLCMRNLEL---LRKNPDVRNKLIELFSVGQQFE 357
Query: 663 ELN-IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
E N +D ++YN F S D + I+R +P+ L ++ FE+K+++EL F Y+ARN+ T
Sbjct: 358 ESNDVDSQIYNGFFSPSDRSTMDIIRETAPQNLPALDLSFEDKRMKELFFRYKARNYPST 417
Query: 722 LSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK---ILNALLMYG 777
LSY E +RW ++R R Y + L + YL+ LL + D K L AL+ Y
Sbjct: 418 LSYDEQQRWLQHR--RDYFTEARLTD----YLQQIQLLMDVHHEDEKRCQQLKALVNYA 470
>gi|410623341|ref|ZP_11334158.1| exodeoxyribonuclease I [Glaciecola pallidula DSM 14239 = ACAM 615]
gi|410157263|dbj|GAC29532.1| exodeoxyribonuclease I [Glaciecola pallidula DSM 14239 = ACAM 615]
Length = 506
Score = 330 bits (846), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 191/487 (39%), Positives = 276/487 (56%), Gaps = 14/487 (2%)
Query: 293 SIKKIGNYYIDILLHNGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLY 352
S+KK N D + ++G T LW+DYET+G++ + D P QFAAIRTD+ LN I NP+ +
Sbjct: 18 SVKK--NNQDDYVKYSG-PTLLWHDYETWGVDPKHDFPCQFAAIRTDLELNIISNPVSYF 74
Query: 353 CKPAPDFLPDPRACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDE 412
C+ D++P+P ACL+T ITPQ L G E +FA+ + ++ KP T VGYN+I FDDE
Sbjct: 75 CQIPNDYVPNPVACLVTGITPQQSLREGYLEAEFAAKVAQVMDKPDTCVVGYNSIRFDDE 134
Query: 413 ITRFMFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLS 472
+TRF+ +RN +PYEREWKN SRWD+I++ +A Y L P GI WP NG PSFKLE LS
Sbjct: 135 VTRFLRYRNFYDPYEREWKNGNSRWDIIDLARACYALRPEGIKWPLNENGFPSFKLEDLS 194
Query: 473 FVNNLSHKKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFF 532
N ++H+ AHDA+SDV+AT+ ARLI+ + P+LF+F SLR K V+ I +PF
Sbjct: 195 AANGIAHESAHDAVSDVKATIAFARLIKASQPKLFDFYFSLRNKNTVMQNIDIANQKPFL 254
Query: 533 YITHMFSSKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSF 592
+I+ M + S PI IHP NKN +I +L D D +++ L K++
Sbjct: 255 HISGMLPAAQGCCSWFMPITIHPTNKNAIICVDLSSDLSAIEHMDPIDLKEILYTKQDEL 314
Query: 593 KEDIP---ISMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK 649
+ I ++H+N+SP V + K L+ R +N + I+ T
Sbjct: 315 PASVKKPGIKLLHINKSPFV-APAKTLTPEHAKRLTISRETCLQNHEFVKGIVGITEKLA 373
Query: 650 KIFLDYKINNSDLELNIDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEE 708
+F D N E++ID LY F S D + ++ P++L+ + E
Sbjct: 374 AVFDDK--NRQYDEVDIDASLYTRGFASSADKQWMTEVKMADPEQLAVWQDKAPDALYAE 431
Query: 709 LIFLYRARNFIETLSYKELKRWKKYRISRFY--NKKNNLYNINMFYLEIESLLKKANEHD 766
+ YRARNF+ TL EL +W+ +R +RF NKK L +I ++IE L +K + D
Sbjct: 432 QLMRYRARNFLNTLDQSELDKWQAHRKARFTTDNKKTCL-SIAECQMQIEELAEKYAD-D 489
Query: 767 TKILNAL 773
K +N L
Sbjct: 490 VKKINLL 496
>gi|440742240|ref|ZP_20921566.1| exonuclease I [Pseudomonas syringae BRIP39023]
gi|440377563|gb|ELQ14208.1| exonuclease I [Pseudomonas syringae BRIP39023]
Length = 476
Score = 330 bits (845), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 167/453 (36%), Positives = 262/453 (57%), Gaps = 15/453 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ WYDYET G+N R DR Q A IRTD LN I P+ L+C+ + D LP P AC+IT
Sbjct: 2 TSSIFWYDYETTGINPRNDRALQMAGIRTDTDLNEIAAPVNLHCQLSDDILPHPAACMIT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITP + G+ E F + + PGT GYNT+ FDDE+TR+ F+RN +PY RE
Sbjct: 62 GITPATLVEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI+V++A Y L P GI WP + +G+ + KLE L+ N + H +AHDALSDV
Sbjct: 122 WQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR P+L++++ +LR K+ V ++ + +P +I+ FS+ +Y+ ++
Sbjct: 181 RATIALARLIREKQPKLYDYLFALRSKQKVQEQVR--LMQPLVHISGRFSAARNYLGVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L D L D ++ L + ++ + +P+ ++H+NR
Sbjct: 239 PLAWHPHNRNALIVCDLHLDHSPLLHEDAEILKRRLYTRHDALGDGELPVPLKLLHINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIW-KKIFLDYKINNSDLELN 665
P VI+ L VL S R + D+ A + A+ + + +W K+ Y ++ +
Sbjct: 299 P-VIAPLGVLRSEDQQRLQLDM--AGYQAR-ATQLSEHREVWHDKLAAVYGKDDFAASED 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY+ F+ +D +R P++L+ + F++ +L EL+F YRARNF +TLS +
Sbjct: 355 PEQQLYDGFMGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSGE 414
Query: 726 ELKRWKKYRISRF----YNKKNNLYNINMFYLE 754
E RW+ + R + N L++ +E
Sbjct: 415 EQTRWRDFCQQRLRSPEWGAPNTLHDFTAALIE 447
>gi|388543224|ref|ZP_10146515.1| exonuclease I [Pseudomonas sp. M47T1]
gi|388278536|gb|EIK98107.1| exonuclease I [Pseudomonas sp. M47T1]
Length = 476
Score = 330 bits (845), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 169/449 (37%), Positives = 258/449 (57%), Gaps = 11/449 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
NS+ WYDYET G+N R DR Q A IRTD LN I+ PI LYC+P D LP P AC+IT
Sbjct: 2 NSSIFWYDYETTGINPRNDRALQVAGIRTDADLNEIEAPINLYCQPGDDILPHPAACVIT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G+ E +F + + + GT S GYNT+ FDDE+TR+ +RN +PY RE
Sbjct: 62 GITPQRLDERGLCEAEFMTRVNAQMARAGTCSAGYNTLRFDDEVTRYSLYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ +RWDLI+V++ Y L P GI WP + +G+ S KLE L+ N + H +AHDALSDV
Sbjct: 122 WQGGNTRWDLIDVVRTAYALRPDGIAWP-QVDGRVSMKLELLTAANGIDHGQAHDALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR P+L+N++ LR K+ VL ++ + +P +I+ FS++ +Y+ ++
Sbjct: 181 RATIALARLIRERQPKLYNWLYQLRSKQKVLDQVR--LFQPLVHISGRFSAERNYLGVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L DP+ L + +R+ L ++ +P+ ++H+NR
Sbjct: 239 PVGWHPRNRNALIVCDLHFDPQVLLDEPVEVLRERLYTRRQELAAGQLPVPLKLVHVNRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELN 665
P V++ L VL R + D+ + A + W+ K+ Y +
Sbjct: 299 P-VLAPLSVLRDEDRQRLQLDMTLYQQR---ADQLQQAHGQWRDKLPALYGEEAFAAVDD 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY+ FI +D +R++ P +L + F++++L EL+F YRARNF +TL+ +
Sbjct: 355 PEQQLYDGFIGDRDRRLCEQVRTLDPHQLGLETWMFDDERLPELLFRYRARNFPDTLNEE 414
Query: 726 ELKRWKKYRISRFYNKKNNLYNINMFYLE 754
E RW ++ R + N + E
Sbjct: 415 ESSRWLEFCRQRLTDPAAGAPNTLAGFAE 443
>gi|378580216|ref|ZP_09828874.1| exonuclease I [Pantoea stewartii subsp. stewartii DC283]
gi|377817025|gb|EHU00123.1| exonuclease I [Pantoea stewartii subsp. stewartii DC283]
Length = 475
Score = 330 bits (845), Expect = 4e-87, Method: Composition-based stats.
Identities = 170/472 (36%), Positives = 266/472 (56%), Gaps = 14/472 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + +RDRP QFA +RTD N I P + YC+P D+LP P A +IT I
Sbjct: 9 TFLFHDYETFGTSPQRDRPAQFAGLRTDSEFNPIGEPEVFYCRPPDDYLPQPEAVMITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G+ E +FA+ I +F T VGYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQLAASRGVNEAEFAARIHALFTTEQTCVVGYNNVRFDDEVTRNIFYRNFYDPYGWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N ++H+ AHDA+SDV
Sbjct: 129 NGNSRWDLLDVMRACYALRPEGINWPENDDGFPSFRLEHLTKANGVAHENAHDAMSDVYV 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
TL +ARL++ P+LF F+ + R K ++ I P +P +++ MF + S + P+
Sbjct: 189 TLAMARLVKEKQPKLFEFLFTHRNKNKLMTLIDIPQMKPLVHVSGMFGAARGNTSWVVPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N LI +L D L D + +R+ L K+ + +P+ ++H+N+ P V
Sbjct: 249 AWHPDNRNALIVVDLAGDIAPLLTLDADSLRERLYTPKSELGDQPAVPVKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDLELNIDE 668
++ L R D N+ +++ + + +K+ + + ++D
Sbjct: 308 LAPANTLRPEDAGRLGIDRQFCLDNL---ATLRQHPDVREKLVAIFAEAEPFAPSEDVDT 364
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
+LY+ F S D + I+R +P L +N F++ ++E+L+F YRARNF TL E +
Sbjct: 365 QLYDGFFSDADRAGMNIIRQTAPANLPALNLTFDSPRVEKLLFRYRARNFPGTLDDAEQQ 424
Query: 729 RWKKYRISRFYNKKNNLYNINMFYLEIESL--LKKANEHDTKILNALLMYGK 778
RW ++R +K + F +E+ESL L + + L AL Y +
Sbjct: 425 RWLQHRREVLNPEK-----VQAFLMELESLASLHEGDAEKLSQLKALYRYAQ 471
>gi|421530220|ref|ZP_15976720.1| exonuclease I [Pseudomonas putida S11]
gi|402212338|gb|EJT83735.1| exonuclease I [Pseudomonas putida S11]
Length = 477
Score = 330 bits (845), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 170/475 (35%), Positives = 261/475 (54%), Gaps = 14/475 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ W+DYET G+N R DRP Q A +RTD LN ID PI LYC+P+ D LP P ACL+T
Sbjct: 2 TSSIFWHDYETTGINPRCDRPLQVAGVRTDFDLNEIDEPISLYCRPSDDILPHPAACLVT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G+ E +F + + PGT GYNT+ FDDE+TR+ +RN +PY RE
Sbjct: 62 GITPQLLAEQGLCEAEFMTRVHAQLAHPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI++++ Y L P GI WP + +G+ S +LE LS N + H AH+ALSDV
Sbjct: 122 WQGGNSRWDLIDIVRTAYALRPDGIEWP-QQDGRTSLRLELLSKANGIDHGHAHEALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR P+L++++ LR K V+ +I + +P +I+ FS+ +Y+ ++
Sbjct: 181 RATIALARLIRQKQPKLYDWLFQLRSKHKVMEQIS--LLQPLVHISGRFSAARNYLGVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L + L +R L + E +P+ ++ +NR
Sbjct: 239 PLAWHPRNRNALIVCDLHQETLPLLRESAEVLRQRLYTRHEELAEGELPVPLKLVQINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNI 666
P V++ L VL R DL + W+ L++ D +
Sbjct: 299 P-VLAPLSVLRPADQQRLGLDLTLLQLR---GEELAEQQAQWQDK-LEHIYGKEDFAPSE 353
Query: 667 DEE--LYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
D E LY+ F+ +D +R++ P +LS + F++ +L EL+F YRARNF ETL+
Sbjct: 354 DPEQQLYDGFLGDRDRRLCEQVRALEPAQLSRGQWMFDDPRLPELLFRYRARNFPETLTG 413
Query: 725 KELKRWKKYRISRFYNKKNNLYN-INMFYLEIESLLKKANEHDTKILNALLMYGK 778
+E +RW + R + + N + F + + A++ ++L+A ++ +
Sbjct: 414 EERQRWFSFCQQRLSDPQWGAPNTLGDFEHARQQAWEGADDAGRRVLDAWQVHAR 468
>gi|384257405|ref|YP_005401339.1| exonuclease I [Rahnella aquatilis HX2]
gi|380753381|gb|AFE57772.1| exonuclease I [Rahnella aquatilis HX2]
Length = 475
Score = 330 bits (845), Expect = 5e-87, Method: Composition-based stats.
Identities = 169/476 (35%), Positives = 271/476 (56%), Gaps = 21/476 (4%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYETFG N DRP QFA +RTD N I+ P+++YC+P+ D+LP+P A +IT I
Sbjct: 8 TFYFHDYETFGKNPALDRPAQFAGVRTDEDFNIIEEPLVIYCRPSDDYLPEPEAVMITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L G+ E +F + I K F PGT VGYN I FDDE++R + +RN +PY W+
Sbjct: 68 TPQVALERGLIEAEFTAQIHKAFSVPGTCIVGYNNIRFDDEVSRNILYRNFYDPYAYSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H+ AHDA++DV A
Sbjct: 128 NGNSRWDLLDVMRACYALRPEGINWPENDDGFPSFRLEHLTKANGIEHENAHDAMADVYA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF+F+L R K + I P P +++ MF + + + P+
Sbjct: 188 TIAMAKLVKQAQPRLFSFLLEHRSKHKLNTLIDIPAMAPLVHVSGMFGAARGNTAWVAPL 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSF---KEDIPISMIHLNRSPI 608
HP NKN +I +L D L + +++R+ L ++ + + +P+ ++H+N+ P+
Sbjct: 248 AWHPENKNAVIMCDLAGDMSTLLDLNPDEMRERLYSRREALQAGQSPLPVKLVHINKCPV 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
+ +L N R D +N++ + N + +K+ + SD
Sbjct: 308 LAPAKTLLPENAE-RLGIDRQRCLENLQL---LRQNPQVREKVVTMFAEAEPFTPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
++D LY+ F S D + I+ P+ L ++ F + ++E L+F +RARN+ TL+
Sbjct: 361 DVDARLYDGFFSDADRAAMRIIVETRPENLPALDLTFNDSRIEPLLFRFRARNYPATLTD 420
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESL--LKKANEHDTKILNALLMYGK 778
E KRW +R + +++ + + LE+ESL L + + +L AL YGK
Sbjct: 421 AEQKRWMLHRQEKLTDER-----VQAYILELESLYNLHEGDVEKMALLKALFEYGK 471
>gi|152979065|ref|YP_001344694.1| exonuclease I [Actinobacillus succinogenes 130Z]
gi|150840788|gb|ABR74759.1| Exodeoxyribonuclease I [Actinobacillus succinogenes 130Z]
Length = 471
Score = 329 bits (844), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 176/485 (36%), Positives = 268/485 (55%), Gaps = 29/485 (5%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YDYE+FG+N DRP QFA IRTD N I P+MLYCK D+LP P A L+T I
Sbjct: 5 SFFIYDYESFGINPATDRPAQFAGIRTDADFNVIGEPVMLYCKQTNDYLPSPEAVLVTGI 64
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C G+PE +FA+ + F +P T +GYN I +DDE+TR+ F+RN I+PYE WK
Sbjct: 65 TPQECNEKGLPEPEFAASVLAEFSRPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 124
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI W Y ++G PSF+LE L+ N ++H+ AHDA+SDV A
Sbjct: 125 NGNSRWDLLDIVRACYALRPEGIEWAYDDDGMPSFRLERLTEANGIAHENAHDAMSDVYA 184
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF + R K+ + I P +++ M + +L+ P+
Sbjct: 185 TIAMAKLIKRKQPKLFQYFFENRGKREIEHLINVADMTPLVHVSGMLGNYRGNCTLVAPV 244
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED----IPISMIHLNRSP 607
HP+N+N +I +L + L I ++R L KK +P+ ++H+N+ P
Sbjct: 245 GWHPVNQNAVIVCDLSQNIDDLLTKSIEELRTALYTKKTDLAAQGQLPVPLKLVHINKCP 304
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNI-KCASSILNNTYIWKKIFLDYKINNSDLELNI 666
I+ +L N R D +N+ K S + I + +++ SD N+
Sbjct: 305 ILAPANTLLPENAE-RLGIDRQFCSENLQKLRQSFEVRSKIEEIFREEHRFEPSD---NV 360
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+ ELY+ F S D LAILR + +KL+ FE+K++ +LIF YRAR+F +TL+ E
Sbjct: 361 EIELYSGFFSNNDKNNLAILRQLPIEKLAEHGLTFEDKRIPDLIFHYRARHFFKTLTRTE 420
Query: 727 LKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGKIDGSSCIY 786
+W+KYR + L K+A + + ++ N ++ YG + +
Sbjct: 421 QLQWEKYRRRK--------------------LEKEATDFEQRMQNLVMEYGDFEDKLNLL 460
Query: 787 RAFYA 791
YA
Sbjct: 461 HQVYA 465
>gi|419958290|ref|ZP_14474354.1| exonuclease I [Enterobacter cloacae subsp. cloacae GS1]
gi|388606548|gb|EIM35754.1| exonuclease I [Enterobacter cloacae subsp. cloacae GS1]
Length = 474
Score = 329 bits (844), Expect = 6e-87, Method: Composition-based stats.
Identities = 174/472 (36%), Positives = 265/472 (56%), Gaps = 14/472 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A ++T I
Sbjct: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVMVTGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G+ E +FA I +F P T VGYN I FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQEARDKGVSEAEFARRIHDLFTVPNTCVVGYNNIRFDDEVTRNIFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 NRNSRWDLLDIMRACYALRPEGINWPENDDGLPSFRLEHLTRANGIEHSNAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF ++LS R K+ ++ I P +P +I+ MF + S + P+
Sbjct: 189 TIAMAKLVKTAQPRLFEYLLSHRSKQKLMTLIDVPQMKPLVHISGMFGAWRGNTSWVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R+ L K + + +P+ ++H+N+ P V
Sbjct: 249 AWHPDNRNAVIMVDLAGDISPLLELDSDPLRERLYTPKEALGDLPAVPVKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL-ELNIDE 668
++ L R + N+K + +N + +K+ + + N+D
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKV---LRDNPQVREKVVAIFAEAEPFVPSENVDA 364
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
+LYN F S D + I+ P+ L ++ F +K++E+L+F YRARN+ TL E +
Sbjct: 365 QLYNGFFSDADRAAMNIVLQTDPRNLPALDITFADKRIEKLMFNYRARNYPGTLDEAEQE 424
Query: 729 RWKKYRISRFYNKKNNLY--NINMFYLEIESLLKKANEHDTKILNALLMYGK 778
RW ++R + F + N Y + M Y + E N +L AL Y +
Sbjct: 425 RWLQHRRNVFTPEFLNSYAQELEMLYGQYE-----GNAEKQALLKALFQYAQ 471
>gi|381158743|ref|ZP_09867976.1| exonuclease I [Thiorhodovibrio sp. 970]
gi|380880101|gb|EIC22192.1| exonuclease I [Thiorhodovibrio sp. 970]
Length = 492
Score = 329 bits (844), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 168/480 (35%), Positives = 273/480 (56%), Gaps = 28/480 (5%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTI---DNPIMLYCKPAPDFLPDPRACLI 368
TF W+DYET+G + RRDRP QFA +RTD LN + + P++ YC+PA DFLP P ACL+
Sbjct: 6 TFYWHDYETWGSDPRRDRPCQFAGLRTDAQLNELGPAEPPLVRYCQPADDFLPAPDACLV 65
Query: 369 TKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYER 428
T ITPQ G+ E FA+ I++ F +PGT SVGYN+I FD+E+TR +F+RN ++PY
Sbjct: 66 TGITPQLAAQQGVSETAFAADIQQQFARPGTCSVGYNSIRFDEEVTRSLFYRNFLDPYGH 125
Query: 429 EWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSD 488
W++ SRWDLI++++ + L P GI WP G SF+LEHL+ N ++H+ AHDAL+D
Sbjct: 126 SWRDGTSRWDLIDLVRLAHALRPEGIEWPRHPGGATSFRLEHLTAANGIAHQGAHDALAD 185
Query: 489 VRATLGLARLIRNNNPRLFNFILSLRKKKYV--LAEIGWPIARPFFYITHMFSSKHSYIS 546
VRATL LARL+R+ PRLF++ L LR K+ V L + G P+ +++ + ++ I+
Sbjct: 186 VRATLALARLLRDAQPRLFHYGLELRDKERVRELLKPGQPV----LHVSSRYPAERGCIA 241
Query: 547 LMWPICIHPM---NKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISM 600
+ + + P +++ +I W+L DP + ++ +IR+ + + I P+
Sbjct: 242 PV--MVVAPTSAEDRSGVILWDLREDPAELFALEVAEIRERVFTRAEDLPPGIRRLPLKK 299
Query: 601 IHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKC----ASSILNNTYIWKKIFLDYK 656
+ LN SP+V + L L ++ R+ D + + A ++ + +++ +
Sbjct: 300 LRLNASPMV-APLSTLRADAAERWLIDPTQVKQRWQAFHANAEAVAR---VAERVRAAFA 355
Query: 657 INNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRAR 716
+ D + D LY F D + +R+MSP +L+ F++ +L L+F YRAR
Sbjct: 356 RHGLDAAQDPDHALYAGFFPPADQRLMGRVRAMSPAELAGARLKFQDPRLPVLLFRYRAR 415
Query: 717 NFIETLSYKELKRWKKYRISRFYNKKNNL-YNINMFYLEIESLLK--KANEHDTKILNAL 773
N+ ++LS E W +RI + ++ + ++ + I L + N ++LNAL
Sbjct: 416 NWPDSLSPTERATWDAWRIRQLADESSGCGPSLRQYRQRIRELRDEHRGNAATEQLLNAL 475
>gi|194431379|ref|ZP_03063671.1| exodeoxyribonuclease I [Shigella dysenteriae 1012]
gi|417672666|ref|ZP_12322128.1| exodeoxyribonuclease I [Shigella dysenteriae 155-74]
gi|194420204|gb|EDX36281.1| exodeoxyribonuclease I [Shigella dysenteriae 1012]
gi|332091578|gb|EGI96659.1| exodeoxyribonuclease I [Shigella dysenteriae 155-74]
Length = 475
Score = 329 bits (844), Expect = 6e-87, Method: Composition-based stats.
Identities = 169/434 (38%), Positives = 249/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R D N+K + N + K+ + SD
Sbjct: 308 VLAQANTLRPEDAERLGIDRQHCLDNLKV---LRENPQVRDKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW +YR F
Sbjct: 422 AEQQRWLEYRRQVF 435
>gi|254786919|ref|YP_003074348.1| exonuclease I [Teredinibacter turnerae T7901]
gi|237686146|gb|ACR13410.1| exodeoxyribonuclease I [Teredinibacter turnerae T7901]
Length = 478
Score = 329 bits (844), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 158/453 (34%), Positives = 262/453 (57%), Gaps = 15/453 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF W+DYET+G N DRP QFA +RTD LN I +P+++YC+P D P P+A ++T I
Sbjct: 3 TFYWHDYETWGANPAVDRPSQFAGVRTDENLNIISDPLVIYCQPPEDIWPQPQAVMVTGI 62
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
+PQ + G+PE++F + I + +P T +VGYN++ FDDE+TR+ +RN +PYEREW+
Sbjct: 63 SPQIARDKGLPEHEFIARIHREMAEPQTCTVGYNSLRFDDEVTRYALFRNYFDPYEREWR 122
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD+I++++ Y L P GI WP G+PSFKLE+L+ N ++H+ AHDA SDV A
Sbjct: 123 NGNSRWDIIDMVRLTYALRPEGIEWPLV-EGRPSFKLENLTQANGIAHQAAHDAFSDVEA 181
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+LI+ P+L+ ++ K+ + I +P +++ FS++H +L+ P+
Sbjct: 182 TIALAKLIKEKQPQLYQYVRDYSGKRKLAELIDVQSRKPLLHVSSRFSAEHGCSALVAPL 241
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
+HP+NKN +I ++L DP+ + ++ L + E IP+ ++HLN+ PI
Sbjct: 242 AMHPVNKNAVIVFDLSVDPQPLIDASAEEVLQRLYVAADDLPEGVERIPLKLVHLNKCPI 301
Query: 609 VISNLKVLSSNLMFRYKFDLNCA---FKNIKCASSILNNTYIWKKIFLDYKINNSDLELN 665
++ K+L R K D + + ++ ++CA + K+ + N+ +
Sbjct: 302 -LATPKLLDETAATRLKIDKSLSEQHWQKLQCAD-------LKSKLTAVFSQNDFPPRQD 353
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LYN FI D LR+ + ++ NF FE+ +L ++ Y+ARNF ETLS +
Sbjct: 354 PEQQLYNGFIGDADKRTSVQLRTATAAQIQQHNFVFEDARLSAMVLRYKARNFPETLSDE 413
Query: 726 ELKRWKKYRISRFYNKKNNLYNINMFYLEIESL 758
E W ++ R + + + F + +L
Sbjct: 414 EAAEWSEHVRLRLMDGGDGCLSYAEFQSTVANL 446
>gi|295098241|emb|CBK87331.1| Exodeoxyribonuclease I subunit C [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 478
Score = 329 bits (844), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 174/475 (36%), Positives = 265/475 (55%), Gaps = 14/475 (2%)
Query: 309 GNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLI 368
TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A ++
Sbjct: 10 ARPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVMV 69
Query: 369 TKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYER 428
T ITPQ + G+ E +FA I +F P T VGYN I FDDE+TR +F+RN +PY
Sbjct: 70 TGITPQEARDKGVSEAEFARRIHDLFTVPNTCVVGYNNIRFDDEVTRNIFYRNFYDPYAW 129
Query: 429 EWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSD 488
W+N SRWDL+++++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++D
Sbjct: 130 SWQNRNSRWDLLDIMRACYALRPEGINWPENDDGLPSFRLEHLTRANGIEHSNAHDAMAD 189
Query: 489 VRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLM 548
V AT+ +A+L++ PRLF ++LS R K+ ++ I P +P +I+ MF + S +
Sbjct: 190 VYATIAMAKLVKTAQPRLFEYLLSHRSKQKLMTLIDVPQMKPLVHISGMFGAWRGNTSWV 249
Query: 549 WPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRS 606
P+ HP N+N +I +L D L D + +R+ L K + + +P+ ++H+N+
Sbjct: 250 APLAWHPDNRNAVIMVDLAGDISPLLELDSDTLRERLYTPKEALGDLPAVPVKLVHINKC 309
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL-ELN 665
P V++ L R + N+K + +N + +K+ + + N
Sbjct: 310 P-VLAQANTLRPEDADRLGINRQHCLDNLKV---LRDNPQVREKVVAIFAEAEPFVPSEN 365
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARN+ TL
Sbjct: 366 VDAQLYNGFFSDADRAAMNIVLQTDPRNLPALDITFADKRIEKLMFNYRARNYPGTLDEA 425
Query: 726 ELKRWKKYRISRFYNKKNNLY--NINMFYLEIESLLKKANEHDTKILNALLMYGK 778
E +RW ++R + F + N Y + M Y + E N +L AL Y +
Sbjct: 426 EQERWLQHRRNVFTPEFLNSYAQELEMLYGQYE-----GNAEKQALLKALFQYAQ 475
>gi|269102608|ref|ZP_06155305.1| exodeoxyribonuclease I [Photobacterium damselae subsp. damselae CIP
102761]
gi|268162506|gb|EEZ41002.1| exodeoxyribonuclease I [Photobacterium damselae subsp. damselae CIP
102761]
Length = 473
Score = 329 bits (844), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 171/433 (39%), Positives = 248/433 (57%), Gaps = 8/433 (1%)
Query: 305 LLHNGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPR 364
++ + W DYETFG + DRP QFA IRTD+ LN I P+++YCKP D+LP P
Sbjct: 1 MIKKNEPSLYWIDYETFGASPATDRPCQFAGIRTDMDLNIIGEPLVIYCKPPHDYLPSPE 60
Query: 365 ACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLIN 424
ACLIT ITPQ G+ E +F + I + KP T VGYN + FDDE+TR+ +RN +
Sbjct: 61 ACLITGITPQEANEKGLSEPEFIARIHEELSKPNTCVVGYNNVRFDDEVTRYTLYRNFYD 120
Query: 425 PYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHD 484
PY W+ SRWDL+++++ Y L P GI WP + G PSFKLE LS N + H AHD
Sbjct: 121 PYGWSWQQGNSRWDLLDIMRTCYALRPDGINWPTDDEGLPSFKLEKLSVANGIEHSNAHD 180
Query: 485 ALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSY 544
A++DV AT+ +A+L++ N P+LF+++ + R K + I P ++T MF +
Sbjct: 181 AMADVYATIEMAKLVKQNQPKLFDYLFNNRHKNKLQQLIDVVNLTPLVHVTGMFGTVCGN 240
Query: 545 ISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMI 601
S + PI HP NKN +IT NL DP + D IR L K+ D IP+ +
Sbjct: 241 TSWIVPIAWHPDNKNAVITINLAQDPTPLIELDSETIRTRLYTKRADLAADELPIPLKEV 300
Query: 602 HLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS- 660
HLN+ PI ++ K L++N R D KN+ + I + I +K+ + +
Sbjct: 301 HLNKCPI-LAPAKTLTANDADRLDIDREQCLKNL---ALIKQHPEIREKVLEVFSVKREF 356
Query: 661 DLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIE 720
D N+D LY+ F S D + + I+R +P++L+N+ +K+++ L+F YRARNF
Sbjct: 357 DNHDNVDAMLYDGFFSHADRVAMDIIRETAPEELANLQLEVADKRIKPLLFRYRARNFPM 416
Query: 721 TLSYKELKRWKKY 733
TLSY+E RWK +
Sbjct: 417 TLSYEEQTRWKHH 429
>gi|114331862|ref|YP_748084.1| exonuclease I [Nitrosomonas eutropha C91]
gi|114308876|gb|ABI60119.1| Exodeoxyribonuclease I subunit C [Nitrosomonas eutropha C91]
Length = 486
Score = 329 bits (843), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 172/476 (36%), Positives = 266/476 (55%), Gaps = 15/476 (3%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
ST W+DYET G N R+DRP QFA +RTD LN I +P+++YCKPA D LP P ACL+T
Sbjct: 6 STLYWHDYETSGANPRQDRPVQFAGLRTDEALNEIGDPLVIYCKPARDRLPHPEACLLTG 65
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G+PE +F ++I +PGT VGYNT+ FDDE+TRF +RN +PY REW
Sbjct: 66 ITPQMAATRGLPEPEFIALIHAQLAQPGTCGVGYNTLRFDDEVTRFALYRNFYDPYAREW 125
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
++ SRWD+I++ + + L P GI WP GKPSF+LE ++ N L H AHDALSDVR
Sbjct: 126 QSGNSRWDVIDLARMTFALRPEGINWPVNGEGKPSFRLEDITAANGLMHDSAHDALSDVR 185
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARL+R+ PRL++++ LR K+ + P + + M+ S+ +L+ P
Sbjct: 186 ATIALARLLRDRQPRLYDWLFRLRDKREASHLLDLTAHTPVLHTSRMYPSEQGCTTLVMP 245
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ N N ++ ++L HDP +F+ +++ + + L K E +P+ I LN+ P
Sbjct: 246 LLPETGNTNSILVYDLRHDPAEFMQLNVDALVERLFTPKLELAEGQQRLPVKTIRLNKCP 305
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASS---ILNNTYIWKKIFLDYKINNSDLEL 664
++ KVL+ + R + +C +L + ++I Y E
Sbjct: 306 -ALAPQKVLNDEIAKR------IGLNDEQCQQHWQLLLQHPDFMQRIRQAYSNGKIFPEN 358
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
+ D LY+ F + D ++R P++L +++ F++ + EL+F YRARNF +TLS
Sbjct: 359 DADLALYDGFANDHDRNLFPLVRDSEPERLIDLSEEFQDGRYAELLFRYRARNFPDTLSA 418
Query: 725 KELKRWKKY-RISRFYNKKNNLYNINMFYLEIESLLKKANEH-DTKILNALLMYGK 778
+E RW+ + R + N +N + ++ L + +ILN L +G+
Sbjct: 419 QEKHRWQVHCRRQLGEDAINGSLTLNKYRQKLIQLRTDCPQQAQQEILNELEAWGR 474
>gi|322832303|ref|YP_004212330.1| Exodeoxyribonuclease I [Rahnella sp. Y9602]
gi|321167504|gb|ADW73203.1| Exodeoxyribonuclease I [Rahnella sp. Y9602]
Length = 475
Score = 329 bits (843), Expect = 8e-87, Method: Composition-based stats.
Identities = 169/476 (35%), Positives = 271/476 (56%), Gaps = 21/476 (4%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYETFG N DRP QFA +RTD N I+ P+++YC+P+ D+LP+P A +IT I
Sbjct: 8 TFYFHDYETFGKNPALDRPAQFAGVRTDEDFNIIEEPLVIYCRPSDDYLPEPEAVMITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L G+ E +F + I K F PGT VGYN I FDDE++R + +RN +PY W+
Sbjct: 68 TPQVALERGLIEAEFTAQIHKAFSVPGTCIVGYNNIRFDDEVSRNILYRNFHDPYAYSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H+ AHDA++DV A
Sbjct: 128 NGNSRWDLLDVMRACYALRPEGINWPENDDGFPSFRLEHLTKANGIEHENAHDAMADVYA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF+F+L R K + I P P +++ MF + + + P+
Sbjct: 188 TIAMAKLVKQAQPRLFSFLLEHRSKHKLNTLIDIPAMAPLVHVSGMFGAARGNTAWVAPL 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSF---KEDIPISMIHLNRSPI 608
HP NKN +I +L D L + +++R+ L ++ + + +P+ ++H+N+ P+
Sbjct: 248 AWHPENKNAVIMCDLAGDMSTLLDLNPDEMRERLYSRREALQAGQSPLPVKLVHINKCPV 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
+ +L N R D +N++ + N + +K+ + SD
Sbjct: 308 LAPAKTLLPENAE-RLGIDRQRCLENLQL---LRQNPQVREKVVTMFAEAEPFTPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
++D LY+ F S D + I+ P+ L ++ F + ++E L+F +RARN+ TL+
Sbjct: 361 DVDARLYDGFFSDADRAAMRIIVETRPENLPALDLTFNDSRIEPLLFRFRARNYPATLTD 420
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESL--LKKANEHDTKILNALLMYGK 778
E KRW +R + +++ + + LE+ESL L + + +L AL YGK
Sbjct: 421 AEQKRWMLHRQEKLTDER-----VQAYILELESLYNLHEGDVEKMALLKALFEYGK 471
>gi|339489177|ref|YP_004703705.1| exonuclease I [Pseudomonas putida S16]
gi|338840020|gb|AEJ14825.1| exonuclease I [Pseudomonas putida S16]
Length = 477
Score = 329 bits (843), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 170/475 (35%), Positives = 260/475 (54%), Gaps = 14/475 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ W+DYET G+N R DRP Q A +RTD LN ID PI LYC+P+ D LP P ACL+T
Sbjct: 2 TSSIFWHDYETTGINPRCDRPLQVAGVRTDFDLNEIDEPISLYCRPSDDILPHPAACLVT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITP G+ E +F + + PGT GYNT+ FDDE+TR+ +RN +PY RE
Sbjct: 62 GITPHLLAEQGLCEAEFMTRVHAQLAHPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI++++ Y L P GI WP + +G+ S +LE LS N + H AH+ALSDV
Sbjct: 122 WQGGNSRWDLIDIVRTAYALRPDGIEWP-QQDGRTSLRLELLSKANGIDHGHAHEALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR P+L++++ LR K V+ +I + +P +I+ FS+ +Y+ ++
Sbjct: 181 RATIALARLIRQKQPKLYDWLFQLRSKHKVMEQIS--LLQPLVHISGRFSAARNYLGVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L + L +R L + E +P+ ++ +NR
Sbjct: 239 PLAWHPRNRNALIVCDLHQETLPLLRESAEVLRQRLYTRHEELAEGELPVPLKLVQINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNI 666
P V++ L VL R DL + W+ L++ D +
Sbjct: 299 P-VLAPLSVLRPADQQRLGLDLTLLQLR---GEELAEQQAQWQDK-LEHIYGKEDFAPSE 353
Query: 667 DEE--LYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
D E LY+ F+ +D +R++ P +LS + F++ +L EL+F YRARNF ETLS
Sbjct: 354 DPEQQLYDGFLGDRDRRLCEQVRALEPAQLSRGQWMFDDPRLPELLFRYRARNFPETLSG 413
Query: 725 KELKRWKKYRISRFYNKKNNLYN-INMFYLEIESLLKKANEHDTKILNALLMYGK 778
+E +RW + R + + N + F + + A++ ++L+A ++ +
Sbjct: 414 EERQRWFSFCQQRLSDPQWGAPNTLGDFEQARQQAWEGADDAGRRVLDAWQVHAR 468
>gi|387769533|ref|ZP_10125796.1| exonuclease C-terminal domain protein [Pasteurella bettyae CCUG
2042]
gi|386906842|gb|EIJ71567.1| exonuclease C-terminal domain protein [Pasteurella bettyae CCUG
2042]
Length = 474
Score = 328 bits (842), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 169/434 (38%), Positives = 257/434 (59%), Gaps = 9/434 (2%)
Query: 306 LHNGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRA 365
+ N + +F YDYE+FG+N DRP QFA IRTD N I +P+M YCK D+LP P A
Sbjct: 1 MANNDFSFFIYDYESFGVNPASDRPAQFAGIRTDADFNIISDPVMFYCKQTNDYLPSPEA 60
Query: 366 CLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINP 425
++T ITPQ C GI E +FA+ I F KP T +GYN I +DDE+TR+ F+RN I+P
Sbjct: 61 VMVTGITPQECNEKGISEPEFAAKILAEFSKPNTCIMGYNNIRYDDEMTRYTFYRNFIDP 120
Query: 426 YEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDA 485
YE WKN SRWDL+++++A Y L P GI WP G P+F+LE+L+ N+++H+ AHDA
Sbjct: 121 YEYSWKNGNSRWDLLDLVRATYALRPEGINWPVDEEGVPNFRLENLTKENDIAHENAHDA 180
Query: 486 LSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYI 545
++DV AT+ +A+LI+ P+LF F R KK V I P +++ M +
Sbjct: 181 MADVYATIAMAKLIKQKQPKLFQFFFENRGKKEVEKLINTGEMTPIVHVSGMLGNYRGNT 240
Query: 546 SLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED----IPISMI 601
+ M PI HP N+N +I +L + L +++ L KK +E+ +P+ +I
Sbjct: 241 AWMAPIAWHPTNQNAVIACDLSANIDDLLSKSAVELQKNLYTKKAELEENGVLPVPLKLI 300
Query: 602 HLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS- 660
H+N+ PIV +L N + +N A+ ++ + + N+ I +K+ +
Sbjct: 301 HINKCPIVAPAKTLLPENAQ---RLGINRAY-CLENLAKLRNSLDIREKVLETFTEERQF 356
Query: 661 DLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIE 720
++ N++ ELYN F + D +AILR + +KL+N FE+K+++EL+F YRAR+F +
Sbjct: 357 EISDNVETELYNGFFNTADKNNMAILRDLPSEKLANSGLSFEDKRIDELLFHYRARHFYK 416
Query: 721 TLSYKELKRWKKYR 734
TL+ E +W+KYR
Sbjct: 417 TLTRAEQIKWQKYR 430
>gi|288934485|ref|YP_003438544.1| exodeoxyribonuclease I [Klebsiella variicola At-22]
gi|288889194|gb|ADC57512.1| Exodeoxyribonuclease I [Klebsiella variicola At-22]
Length = 474
Score = 328 bits (842), Expect = 1e-86, Method: Composition-based stats.
Identities = 169/429 (39%), Positives = 246/429 (57%), Gaps = 7/429 (1%)
Query: 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKIT 372
FL++DYETFG + DRP QFAAIRTD LN I P + YCKPA D+LP P+A +IT IT
Sbjct: 10 FLFHDYETFGTSPSLDRPAQFAAIRTDAELNVIGEPEVFYCKPADDYLPQPQAVMITGIT 69
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
PQ L G E FA I +F P T VGYN + FDDE+TR +F+RN +PY W++
Sbjct: 70 PQEALAKGDNEAAFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRAT 492
+ SRWDL++V++A Y L P GITWP + G PSF+LEHL+ N + H+ AHDA++DV AT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGITWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVYAT 189
Query: 493 LGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPIC 552
+ +A+L++ PRLF+++ S R K+ + I P +P +I+ MF + SL+ P+
Sbjct: 190 IAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHISGMFGAARGNTSLVAPLA 249
Query: 553 IHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIVI 610
HP N+N +I +L D L D + +R+ L + + PI ++HLN+ P V+
Sbjct: 250 WHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDLPAAPIKLVHLNKCP-VL 308
Query: 611 SNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL-ELNIDEE 669
+ L R + +N A + N + +K+ Y + N+D +
Sbjct: 309 AQANTLRPQDAERLGISIQRCLEN---AQLLRANPQVREKVVAVYAEAEPFVPSENVDAQ 365
Query: 670 LYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKR 729
LYN F S D + I+ P+ L ++ F +K++E L+F YRARNF TL E +R
Sbjct: 366 LYNGFFSDADRAAMKIVLETEPRNLPALDITFADKRIERLLFNYRARNFPGTLDEHEQQR 425
Query: 730 WKKYRISRF 738
W ++R F
Sbjct: 426 WLEHRRQVF 434
>gi|170726402|ref|YP_001760428.1| exonuclease I [Shewanella woodyi ATCC 51908]
gi|169811749|gb|ACA86333.1| Exodeoxyribonuclease I [Shewanella woodyi ATCC 51908]
Length = 470
Score = 328 bits (842), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 177/477 (37%), Positives = 266/477 (55%), Gaps = 22/477 (4%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
+ ST W+DYETFG N +DRP QFA IRTD LN I P YCK A D+LP P A L
Sbjct: 4 SATSTIFWHDYETFGANPAKDRPSQFAGIRTDFDLNIIGEPETFYCKVANDYLPSPEAIL 63
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
IT ITPQ G+PE +F + +F +P T GYN+I FDDE++R+ F+RN +PY
Sbjct: 64 ITGITPQLANLKGVPEAEFMGKVHALFSQPNTCVAGYNSIRFDDEVSRYGFYRNFYDPYA 123
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
REW+ SRWD+I++++A Y P GI WP K +G PSFKLEHL+ N LSH+KAHDA+S
Sbjct: 124 REWQQGNSRWDIIDLVRACYAFRPEGIEWPLKEDGSPSFKLEHLTQANGLSHEKAHDAMS 183
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ +A+LI+ P+LF++ +LRKK+ V I +P +++ SS H S+
Sbjct: 184 DVYATIDMAKLIKEKQPKLFDYFFNLRKKQEVSKLIDVLNMQPLIHVSSKISSLHGCASI 243
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED-IPISM--IHLN 604
+ P+ H NKN +I NL D + D+ +IR+ + ++ D +PIS+ +H+N
Sbjct: 244 IAPVAHHSSNKNAIICVNLAMDISPLIELDVEQIRERMYTRRADLAPDELPISVKQVHIN 303
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCA---FKNIKCASSILNNTYIWKKIFLDYKINNSD 661
+ P + S K+L+ R D A +K +K + + + N+ D
Sbjct: 304 KCPFIAST-KILTDENAARLDIDKAFAREQYKRLKQHPELREKLVSVFDVEYESDSNDPD 362
Query: 662 LELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
L+L F S D K+ ++R P+ L+ + F++ +L+E++F YR RN+ E
Sbjct: 363 LQL-----YSGGFFSSADKAKMEMIRHTLPQNLAALELHFDDSRLKEMLFRYRGRNYPEF 417
Query: 722 LSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKA--NEHDTKILNALLMY 776
E +W+++ SR N + ++E+L+ + +E K+L AL Y
Sbjct: 418 FDDSESMKWREFCQSRL--------NDPDYMFKLENLVNETSQSEDKQKLLTALCHY 466
>gi|51595906|ref|YP_070097.1| exonuclease I [Yersinia pseudotuberculosis IP 32953]
gi|170024741|ref|YP_001721246.1| exonuclease I [Yersinia pseudotuberculosis YPIII]
gi|186894995|ref|YP_001872107.1| exonuclease I [Yersinia pseudotuberculosis PB1/+]
gi|51589188|emb|CAH20808.1| exodeoxyribonuclease I [Yersinia pseudotuberculosis IP 32953]
gi|169751275|gb|ACA68793.1| Exodeoxyribonuclease I [Yersinia pseudotuberculosis YPIII]
gi|186698021|gb|ACC88650.1| Exonuclease domain protein [Yersinia pseudotuberculosis PB1/+]
Length = 476
Score = 328 bits (842), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 170/477 (35%), Positives = 267/477 (55%), Gaps = 15/477 (3%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
N TF +DYETFG DRP QFA +RTD+ N ++ P+++YCKPA D+LP P A +
Sbjct: 5 NKQPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVM 64
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
IT ITPQ L NG+ E +F+ I + F PGT +GYN I FDDE++R +F+RN +PY
Sbjct: 65 ITGITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYA 124
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
W+ SRWDL++V++A Y L P GI WP ++G PSFKLEHL+ N + H +AHDA+S
Sbjct: 125 YSWQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMS 184
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ +A+L++ PRLF+++ R K + A I P +++ MF + S
Sbjct: 185 DVYATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSW 244
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
+ P+ HP NKN +I +L D L D + +R+ L +++ + IPI ++H+N
Sbjct: 245 VAPLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHIN 304
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF-LDYKINNSDLE 663
+ P++ +L N R D +N++ + N + +K+ L + +
Sbjct: 305 KCPVLAPAKTLLPEN-ADRLGIDRQRCLQNLQL---LRQNPQVREKVVALFAQAEPFAVT 360
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
++D +LYN F S D + I++ P+ L ++ F++ +LE L+F +RARN+ TL+
Sbjct: 361 DDVDTQLYNGFFSDADRATMKIIQQTEPQNLPALDLTFQDPRLEALLFRFRARNYPNTLN 420
Query: 724 YKELKRWKKYRISRFYNKKNNLY--NINMFYLEIESLLKKANEHDTKILNALLMYGK 778
E +RW ++R ++ Y + FY + E ++ +L AL Y K
Sbjct: 421 NSEQQRWLQHRREALSPERVQDYVLQLEQFYNQYED-----DKEKLALLKALFEYAK 472
>gi|390435102|ref|ZP_10223640.1| exonuclease I [Pantoea agglomerans IG1]
Length = 475
Score = 328 bits (842), Expect = 1e-86, Method: Composition-based stats.
Identities = 172/472 (36%), Positives = 260/472 (55%), Gaps = 14/472 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + RDRP QFA +RTD N + P + YC+P D+LP P A +IT I
Sbjct: 9 TFLFHDYETFGTSPSRDRPAQFAGLRTDSEFNPVGEPEVFYCRPPDDYLPQPEAVMITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ ++ G+ E +FA I +F T VGYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQIAMSRGVIEAEFAERIHALFTTEQTCVVGYNNVRFDDEVTRNIFYRNFYDPYGWAWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++A Y L P GI WP G PSF+LEHL+ N +SH+ AHDA+SDV A
Sbjct: 129 NGNSRWDLLDVMRACYALRPEGINWPENEEGFPSFRLEHLTKANGVSHENAHDAMSDVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
TL +A+L++ P+LF F+ + R K ++ I P +P +++ MF + S + P+
Sbjct: 189 TLAMAKLVKEKQPKLFEFLFTHRNKNKLMNLIDIPQMKPLVHVSGMFGAARGNTSWIVPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIV 609
HP N+N LI +L D L D + +R+ L KN + +P+ ++H+N+ P V
Sbjct: 249 AWHPDNRNALIVVDLAGDMSPLLQLDADTLRERLYTPKNDLGDLPAVPVKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK-INNSDLELNIDE 668
++ L R D N+ + +F + + SD ++D
Sbjct: 308 LAPASTLRPEDAARLNIDRQHCLANLALLRQQPDVREKLVTLFAEAEPFTPSD---DVDT 364
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
+LY+ F S D + I+R +P L ++ FE+ ++ +L+F YRARNF TL E +
Sbjct: 365 QLYDGFFSDADRAGMNIIRQTAPANLPALDLSFESARVAKLLFRYRARNFPGTLDDTEQQ 424
Query: 729 RWKKYRISRFYNKKNNLYNINMFYLEIESL--LKKANEHDTKILNALLMYGK 778
RW ++R N + F E+E+L L +A+ L AL +Y +
Sbjct: 425 RWLQHRREVL-----NAERVQAFMQELEALANLHEADAERVGQLKALYLYAQ 471
>gi|422336074|ref|ZP_16417047.1| exodeoxyribonuclease I [Aggregatibacter aphrophilus F0387]
gi|353346260|gb|EHB90545.1| exodeoxyribonuclease I [Aggregatibacter aphrophilus F0387]
Length = 474
Score = 328 bits (842), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 180/475 (37%), Positives = 264/475 (55%), Gaps = 22/475 (4%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YDYE+FG+N DRP QF IRTD N I ++LYCK D+LP P A L+T I
Sbjct: 7 SFFIYDYESFGVNPATDRPAQFGGIRTDANFNIIGESVVLYCKQTNDYLPAPEAVLVTGI 66
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C G+PE FA+ I + F +P T +G+N I +DDE+TR+ F+RN I+PYE WK
Sbjct: 67 TPQECNEKGLPEPDFAARILQEFSQPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWK 126
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P G+ WP + G PSF+LE L+ N + H AHDA+SDV A
Sbjct: 127 NGNSRWDLLDLVRACYALRPDGVEWPLDDEGMPSFRLEKLTEANGIEHTNAHDAMSDVYA 186
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF + R KK + I P +++ M + +L+ P+
Sbjct: 187 TIEMAKLIKQKQPKLFQYFFENRGKKEIEKLINTAEMTPLVHVSGMLGNYRGNTTLIAPL 246
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED----IPISMIHLNRSP 607
HP NKN +I +L + L ++R+ L KK + E +P+ +IH+N+ P
Sbjct: 247 AWHPTNKNAVIVCDLTANIDDLLTKSAEELRENLYTKKETLLEAGVLLVPLKLIHINKCP 306
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF----LDYKINNSDLE 663
IV +LS N R D +N +L + I +K+ D + SD
Sbjct: 307 IVAPEKTLLSQNAE-RLGIDRELCAQN---QQRLLASKDIRQKVMDIFQQDREFEASD-- 360
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
N++ ELYN F S D +AILR++ P+KL+ N F++ ++ +L+F YRAR+F TL+
Sbjct: 361 -NVETELYNGFFSDADKNNMAILRTLEPEKLAEHNLRFQDPRIPQLLFHYRARHFYRTLN 419
Query: 724 YKELKRWKKY-------RISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILN 771
E +W+KY I RF L N E +LL+K E+ KI++
Sbjct: 420 RAEQIKWQKYCRKKLDAEILRFEQSLQELAAQNEHNEENLTLLQKVYEYGNKIIS 474
>gi|431804244|ref|YP_007231147.1| exonuclease I [Pseudomonas putida HB3267]
gi|430795009|gb|AGA75204.1| exonuclease I [Pseudomonas putida HB3267]
Length = 477
Score = 328 bits (842), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 170/475 (35%), Positives = 262/475 (55%), Gaps = 14/475 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ W+DYET G+N R DRP Q A +RTD LN ID PI LYC+P+ D LP P ACL+T
Sbjct: 2 TSSIFWHDYETTGINPRCDRPLQVAGVRTDFDLNEIDEPISLYCRPSDDILPHPAACLVT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G+ E +F + + PGT GYNT+ FDDE+TR+ +RN +PY RE
Sbjct: 62 GITPQLLAEQGLCEAEFMTRVHAQLAHPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI++++ Y L P GI WP + +G+ S +LE LS N + H AH+ALSDV
Sbjct: 122 WQGGNSRWDLIDIVRTAYALRPDGIEWP-QQDGRTSLRLELLSKANGIDHGHAHEALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR P+L++++ LR K V+ +I + +P +I+ FS+ +Y+ ++
Sbjct: 181 RATIALARLIRQKQPKLYDWLFQLRSKHKVMEQIR--LLQPLVHISGRFSAARNYLGVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L + L +R L + E +P+ ++ +NR
Sbjct: 239 PLAWHPRNRNALIVCDLHQETLPLLRESAEVLRRRLYTRHEELAEGELPVPLKLVQVNRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNI 666
P V++ L VL R DL + W+ L++ D +
Sbjct: 299 P-VVAPLSVLRPADQQRLGLDLTLLQLR---GEELAEQQAQWQDK-LEHIYGKEDFAPSE 353
Query: 667 DEE--LYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
D E LY+ F+ +D +R++ P +LS+ + F++ +L EL+F YRARNF ETL+
Sbjct: 354 DPEQQLYDGFLGDRDRRLCEQVRALEPAQLSHGQWMFDDLRLPELLFRYRARNFPETLTG 413
Query: 725 KELKRWKKYRISRFYNKKNNLYN-INMFYLEIESLLKKANEHDTKILNALLMYGK 778
+E +RW + R + + N + F + + A++ ++L+A ++ +
Sbjct: 414 EERQRWFSFCQQRLSDPQWGAPNTLGDFEQARQQAWEGADDAGRRVLDAWQVHAR 468
>gi|153949389|ref|YP_001401389.1| exonuclease I [Yersinia pseudotuberculosis IP 31758]
gi|152960884|gb|ABS48345.1| exodeoxyribonuclease I [Yersinia pseudotuberculosis IP 31758]
Length = 476
Score = 328 bits (842), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 170/477 (35%), Positives = 267/477 (55%), Gaps = 15/477 (3%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
N TF +DYETFG DRP QFA +RTD+ N ++ P+++YCKPA D+LP P A +
Sbjct: 5 NKQPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVM 64
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
IT ITPQ L NG+ E +F+ I + F PGT +GYN I FDDE++R +F+RN +PY
Sbjct: 65 ITGITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYA 124
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
W+ SRWDL++V++A Y L P GI WP ++G PSFKLEHL+ N + H +AHDA+S
Sbjct: 125 YSWQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMS 184
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ +A+L++ PRLF+++ R K + A I P +++ MF + S
Sbjct: 185 DVYATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSW 244
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
+ P+ HP NKN +I +L D L D + +R+ L +++ + IPI ++H+N
Sbjct: 245 VAPLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHIN 304
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF-LDYKINNSDLE 663
+ P++ +L N R D +N++ + N + +K+ L + +
Sbjct: 305 KCPVLAPAKTLLPEN-ADRLGIDRQRCLQNLQL---LRQNPQVREKVVALFAQAEPFAVA 360
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
++D +LYN F S D + I++ P+ L ++ F++ +LE L+F +RARN+ TL+
Sbjct: 361 DDVDTQLYNGFFSDADRATMKIIQQTEPQNLPALDLTFQDPRLEALLFRFRARNYPNTLN 420
Query: 724 YKELKRWKKYRISRFYNKKNNLY--NINMFYLEIESLLKKANEHDTKILNALLMYGK 778
E +RW ++R ++ Y + FY + E ++ +L AL Y K
Sbjct: 421 DSEQQRWLQHRREALSPERVQDYVLQLEQFYNQYED-----DKEKLALLKALFEYAK 472
>gi|288942185|ref|YP_003444425.1| Exodeoxyribonuclease I [Allochromatium vinosum DSM 180]
gi|288897557|gb|ADC63393.1| Exodeoxyribonuclease I [Allochromatium vinosum DSM 180]
Length = 477
Score = 328 bits (842), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 174/481 (36%), Positives = 263/481 (54%), Gaps = 33/481 (6%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+ TF W+DYET+G + RRDRP QFA +RTD LN + +P++L+C+P+ D LP P ACL+T
Sbjct: 2 SDTFYWHDYETWGADPRRDRPCQFAGVRTDADLNEVGDPLVLFCRPSDDLLPHPDACLVT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
+TPQ G+ E +FA I +PGT VGYN++ FDDE+TR +F+RN +PY RE
Sbjct: 62 GLTPQRVAREGVVEAEFARAIHAELSRPGTCGVGYNSLRFDDEVTRHLFYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W++ SRWDLI+V++ + L P GI WP + G SF+LE L+ N + H +AHDAL+DV
Sbjct: 122 WRSGNSRWDLIDVLRLAHALRPEGIEWPLNDEGTTSFRLEQLTVANGIDHGQAHDALADV 181
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LAR +R+ PRLF++ L+LR K+ V A + RP +++ F + I+ +
Sbjct: 182 RATIALARRLRDIQPRLFSYALTLRDKRRVRALLD--ERRPLLHVSARFPAALGCIAPIC 239
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFK---EDIPISMIHLNRS 606
P+ HP N N +I ++L DP + L + +IR L E +P+ +H+N
Sbjct: 240 PVAAHPTNSNGVICFDLRADPSQLLELSVEEIRRRLFTPSEDLPAGVERVPLKTVHVNHV 299
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIK--CASSILNNTYIWKKIFLDYKINNSDLEL 664
P+ ++ L L+ R+ D ++ + ASSI + + ++ L +
Sbjct: 300 PM-LAPLATLTPERAERWSIDPARVVRHAQWIAASSIAIESRV-------RAVHERPLPV 351
Query: 665 NIDEELY---NNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
D EL F+S D + +P +L+ F + +L L+F YRARN+ ET
Sbjct: 352 ETDPELMLYSGGFLSDADRRACDQVVRSNPAELATAPPRFSDPRLGTLLFRYRARNWPET 411
Query: 722 LSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIES----LLKKANEHDT-----KILNA 772
L+ +E + W YR R + L+IE L + A HD IL+A
Sbjct: 412 LTPEEREDWDAYRFMRLTDPDGGA------SLQIEGYEARLAELAGVHDDDPARLAILDA 465
Query: 773 L 773
L
Sbjct: 466 L 466
>gi|145631376|ref|ZP_01787147.1| exodeoxyribonuclease I [Haemophilus influenzae R3021]
gi|144983035|gb|EDJ90539.1| exodeoxyribonuclease I [Haemophilus influenzae R3021]
Length = 473
Score = 328 bits (842), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 176/461 (38%), Positives = 259/461 (56%), Gaps = 18/461 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
N +F YDYE+FG+N DRP QFA IRTD N I PIM YCK D+LP P A ++T
Sbjct: 4 NFSFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVT 63
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ C G+ E +FA+ I F +P T +GYN I +DDE+TR+ F+RN I+PYE
Sbjct: 64 GITPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYS 123
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
WKN SRWDL+++++A Y L P GI W Y ++G PSF+LE L+ N + H+ AHDA++DV
Sbjct: 124 WKNGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADV 183
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+LI+ P+LF + R KK + + P +++ M + + +
Sbjct: 184 YATIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVA 243
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLNR 605
P+ HP N+N LI +L D L +++R L KK+ +E +P+ ++H+N+
Sbjct: 244 PLAWHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSELEERGVSSVPLKLVHINK 303
Query: 606 SPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELN 665
PI ++ K L R D N+ + + IF + + S+ N
Sbjct: 304 CPI-LAPAKTLLPETADRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASN--DN 360
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
++ ELYN F S D +AILRS+ +KLS FE+K++ EL+F YRAR+F +TL+
Sbjct: 361 VETELYNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRA 420
Query: 726 ELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKK-ANEH 765
E +WKKYR ++ +E ES L++ A EH
Sbjct: 421 EQIKWKKYRQNKLEKSA----------VEFESSLQRLAEEH 451
>gi|443642519|ref|ZP_21126369.1| Exoribonuclease I [Pseudomonas syringae pv. syringae B64]
gi|443282536|gb|ELS41541.1| Exoribonuclease I [Pseudomonas syringae pv. syringae B64]
Length = 476
Score = 328 bits (842), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 167/453 (36%), Positives = 260/453 (57%), Gaps = 15/453 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ WYDYET G+N R DR Q A IRTD LN I P+ L+C+ + D LP P AC+IT
Sbjct: 2 TSSIFWYDYETTGINPRNDRALQMAGIRTDTDLNEIAPPVNLHCQLSDDILPHPAACMIT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITP G+ E F + + PGT GYNT+ FDDE+TR+ F+RN +PY RE
Sbjct: 62 GITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI+V++A Y L P GI WP + +G+ + KLE L+ N + H +AHDALSDV
Sbjct: 122 WQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR P+L++++ +LR K+ V ++ + +P +I+ FS+ +Y+ ++
Sbjct: 181 RATIALARLIREKQPKLYDYLFALRSKQKVQEQVR--LMQPLVHISGRFSAARNYLGVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L D L ++ L + ++ + +P+ ++H+NR
Sbjct: 239 PLAWHPHNRNALIVCDLHLDHSPLLHEGAETLKRRLYTRHDALGDGELPVPLKLLHINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIW-KKIFLDYKINNSDLELN 665
P VI+ L VL S R + D+ A + A+ + +W K+ Y ++ +
Sbjct: 299 P-VIAPLGVLRSEDQQRLQLDM--AGYQAR-AAQLSERREVWHDKLAAVYGKDDFVASED 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY+ FI +D +R P++L+ + F++ +L EL+F YRARNF +TLS +
Sbjct: 355 PEQQLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSGE 414
Query: 726 ELKRWKKYRISRF----YNKKNNLYNINMFYLE 754
E RW+ + R + N L++ ++E
Sbjct: 415 EQTRWRDFCQQRLRSPEWGAPNTLHDFTAAWVE 447
>gi|345430217|ref|YP_004823337.1| exonuclease I [Haemophilus parainfluenzae T3T1]
gi|301156280|emb|CBW15751.1| exonuclease I [Haemophilus parainfluenzae T3T1]
Length = 473
Score = 328 bits (842), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 172/433 (39%), Positives = 249/433 (57%), Gaps = 15/433 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
N +F YDYE+FG+N DRP QFA IRTD N I P+MLYCK D+LP P A ++T
Sbjct: 4 NFSFFIYDYESFGINPASDRPAQFAGIRTDADFNIIGEPVMLYCKQTNDYLPAPEAVMVT 63
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ C GIPE +FA+ I F +P T +GYN I +DDE+TR+ F+RN I+PYE
Sbjct: 64 GITPQECNEKGIPEPEFAAKILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYS 123
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
WKN SRWDL+++++A Y L P GI W Y ++G PSF+LE L+ N + H+ AHDA++DV
Sbjct: 124 WKNGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADV 183
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+LI+ P+LF F R KK + I P +++ M + + +
Sbjct: 184 YATIAMAKLIKEKQPKLFQFFFEHRGKKEIEKLIDTAEMTPLVHVSGMLGNYRGNCAWVA 243
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLNR 605
P+ HP N+N +I +L D L +R L KK+ +E IP+ ++H+N+
Sbjct: 244 PLAWHPTNQNAVIVCDLSGDINNLLSKSAVDLRQDLYTKKSELEERGVSSIPLKLVHINK 303
Query: 606 SPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL- 664
PI+ +L N R D N+ L+ I +K+ +I + + E
Sbjct: 304 CPILAPAKTLLPENAA-RLGIDRQHCLDNLAKLRQSLD---IREKVI---EIFSGEREFE 356
Query: 665 ---NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
N++ ELYN F S D +AILR + +KL+ FE+K++ EL+F YRAR+F +T
Sbjct: 357 PSNNVETELYNGFFSNADKNNMAILRDLPAEKLAEHGLAFEDKRIPELLFHYRARHFYKT 416
Query: 722 LSYKELKRWKKYR 734
L+ E +W+KYR
Sbjct: 417 LNRAEQIKWQKYR 429
>gi|90578663|ref|ZP_01234473.1| putative exonuclease I [Photobacterium angustum S14]
gi|90439496|gb|EAS64677.1| putative exonuclease I [Photobacterium angustum S14]
Length = 473
Score = 328 bits (842), Expect = 1e-86, Method: Composition-based stats.
Identities = 177/473 (37%), Positives = 261/473 (55%), Gaps = 18/473 (3%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
+T W DYETFG + DRP QFA +RTD+ +N I P+++YCKP D+LP P ACLIT
Sbjct: 7 ATLYWIDYETFGASPANDRPCQFAGVRTDMDMNIIGEPLVIYCKPPADYLPSPEACLITG 66
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ + G+ E +F I KP T +GYN + FDDE+TR+ +RN +PY W
Sbjct: 67 ITPQEAMEKGLSEPEFIEAIHAELSKPNTCVIGYNNVRFDDEVTRYTLYRNFFDPYGWAW 126
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+N SRWDL+++++ Y L P G+ WP + +PSFKLE LS N + H AHDA++DV
Sbjct: 127 QNGNSRWDLLDIMRTCYALRPEGVNWPLDDEDRPSFKLEKLSIANGIEHANAHDAMADVY 186
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LA++I+ N P+LF+++ LR K+ + I P +I+ MF + S + P
Sbjct: 187 ATIELAKIIKTNQPKLFDYLFDLRHKRKLQELIDIVNLTPLVHISGMFGTDCGNTSWIVP 246
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP NKN +IT NL DP + D +++R+ L K+ D +P+ +HLN+ P
Sbjct: 247 VAWHPDNKNAVITVNLALDPTPLIELDTDQLRERLYTKRVDLAPDELPVPVKEVHLNKCP 306
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKN---IKCASSILNNTYIWKKIFLDYKINNSDLEL 664
V++ K L + R D KN IK I + +Y N+
Sbjct: 307 -VLAPAKTLKAEDAARLGIDREQCLKNLALIKQHPEIREKLIEMFSVKREYAAND----- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D LY+ F S D + I+R +P +L+++ ++K+++ L+F YRARNF TLSY
Sbjct: 361 NVDAMLYDGFFSTADRSTMDIIRETAPDQLASLEINVDDKRIKPLLFRYRARNFPMTLSY 420
Query: 725 KELKRWKKYRISRF-YNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMY 776
+E RWK + F N + N E ES +E+ K+L +L Y
Sbjct: 421 EEQVRWKHHCQDFFEMNMPKYMENFEAVAYEHES-----DENKMKVLQSLYDY 468
>gi|88707066|ref|ZP_01104762.1| exodeoxyribonuclease I [Congregibacter litoralis KT71]
gi|88698716|gb|EAQ95839.1| exodeoxyribonuclease I [Congregibacter litoralis KT71]
Length = 482
Score = 328 bits (841), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 171/478 (35%), Positives = 271/478 (56%), Gaps = 10/478 (2%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
+ + TF W+DYETFG++ DRP QFA +RTD+ LN I P+++Y +P D++P P ACL
Sbjct: 2 SSSETFYWHDYETFGVDPAYDRPSQFAGLRTDLDLNLIGEPLVIYAQPPRDYVPHPDACL 61
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
IT ITPQ L G+ E +F S I F+KPGT +VGYN++ FDD +TR +RNL +PY
Sbjct: 62 ITGITPQTALAEGVVEAQFMSTILDEFMKPGTCAVGYNSLRFDDTVTRATLYRNLRDPYA 121
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
RE+ + SRWDLI+V++ Y L P G+ WP +++G PSF+LE L N L +AHDAL
Sbjct: 122 REYGDGRSRWDLIDVVRTAYALRPEGLNWPTRDDGLPSFRLEDLCKANGLEQGQAHDALV 181
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV+AT+ LAR I++ PRLF+++ R K+ V + P+A+P +++ MF ++ + + L
Sbjct: 182 DVKATIALARAIKDKQPRLFDWLFRQRFKQAVKPLLD-PMAQPVLHVSGMFGARRANLGL 240
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
+ P+ +H N+N +I +L D + ++ L E I +H+N
Sbjct: 241 ILPLAVHYQNRNEVICADLSVDAALIIDLPAEELHRRLYTSNADLGEGEVRPGIKSVHIN 300
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNN--TYIWKKIFLDYKINNSDL 662
R P+++ K+ + + R DL N++ + + K+ +++ +
Sbjct: 301 RCPVLLPE-KMADAAVAERSGLDLAVCHGNLQRLRAYDERMPGALRDKLRAVSELSGREP 359
Query: 663 ELNIDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
E + D LY+ FI K+D L + +++P+ L+ FE+ +LEE++F YRARN+ ET
Sbjct: 360 ETDPDRMLYSGGFIPKEDRRTLDRVLALTPEDLATTTVAFEDTRLEEMLFRYRARNYPET 419
Query: 722 LSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKAN--EHDTKILNALLMYG 777
L+ +E RW++YR +R N+ IE L A + D +L L +G
Sbjct: 420 LNDEERARWEEYRFARISEGDGRSLNLEDLNGIIEERLIAAQITDRDRHVLEELQRWG 477
>gi|325578381|ref|ZP_08148516.1| exodeoxyribonuclease I [Haemophilus parainfluenzae ATCC 33392]
gi|325160117|gb|EGC72246.1| exodeoxyribonuclease I [Haemophilus parainfluenzae ATCC 33392]
Length = 473
Score = 328 bits (841), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 169/428 (39%), Positives = 246/428 (57%), Gaps = 9/428 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YDYE+FG+N DRP QFA IRTD N I P+MLYCK D+LP P A ++T I
Sbjct: 6 SFFIYDYESFGINPASDRPAQFAGIRTDANFNIIGEPVMLYCKQTNDYLPAPEAVMVTGI 65
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C GIPE +FA+ I F +P T +GYN I +DDE+TR+ F+RN I+PYE WK
Sbjct: 66 TPQECNEKGIPEPEFAAKILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI W Y ++G PSF+LE L+ N + H+ AHDA++DV A
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF F R KK + + P +++ M + + + P+
Sbjct: 186 TIAMAKLIKEKQPKLFQFFFEHRGKKEIEKLLDTAEMTPLVHVSGMLGNYRGNCAWVAPL 245
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLNRSP 607
HP N+N +I +L D L +R L KK+ +E +P+ ++H+N+ P
Sbjct: 246 AWHPTNQNAVIVCDLSGDIDNLLSKSAVDLRQDLYTKKSELEERGVSSVPLKLVHINKCP 305
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK-INNSDLELNI 666
I+ +L N R D N+ L+ +IF + + SD N+
Sbjct: 306 ILAPAKTLLPENAA-RLGIDRQHCLDNLAKLRQSLDIREKVIEIFSEEREFEPSD---NV 361
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+ ELYN F S D +AILR + +KL+ FE+K++ EL+F YRAR+F +TL+ E
Sbjct: 362 ETELYNGFFSSADKNNMAILRDLPAEKLAGHGLAFEDKRIPELLFHYRARHFYKTLNRAE 421
Query: 727 LKRWKKYR 734
+W+KYR
Sbjct: 422 QIKWQKYR 429
>gi|421079066|ref|ZP_15540011.1| Exodeoxyribonuclease I subunit C [Pectobacterium wasabiae CFBP
3304]
gi|401706253|gb|EJS96431.1| Exodeoxyribonuclease I subunit C [Pectobacterium wasabiae CFBP
3304]
Length = 475
Score = 328 bits (841), Expect = 1e-86, Method: Composition-based stats.
Identities = 168/476 (35%), Positives = 271/476 (56%), Gaps = 21/476 (4%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF +DYETFG + RDRP QFA +RTD+ N I P+++YC+P D+LP+P A +IT I
Sbjct: 8 TFFIHDYETFGKHPARDRPAQFAGVRTDMDFNIIGEPLVIYCRPTDDYLPEPEAVMITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L G+ E +FA I + F PGT +GYN I FDDE++R +F+RN +PY W+
Sbjct: 68 TPQVALARGVNEAEFARQIHEAFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYDPYAYSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
+ SRWDL++ ++A Y L P GI WP ++G PSF+LEHL+ N ++H++AHDA+SDV A
Sbjct: 128 HGNSRWDLLDALRACYALRPEGIVWPENDDGLPSFRLEHLTKANGIAHEQAHDAMSDVYA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L + P+LF ++ LR K + A I P +P +++ MF + S S + P+
Sbjct: 188 TIAMAKLFKQAQPKLFEYLFPLRNKNKLSALIDIPQMKPLVHVSGMFGAARSNTSWVAPL 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L D L D +R+ L ++++ D +P+ ++H+N+ P
Sbjct: 248 AWHPDNRNAVIMCDLAGDMTPLLELDSQALRERLYTRRDALTADQSAVPLKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY----KINNSDLEL 664
V++ L R D N+ + + NN+ + +K+ + SD
Sbjct: 307 VLAPANTLRPEDAERLGIDRQRCLDNL---ALLRNNSDVREKVVELFAEAPAFAASD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
++D LY+ F D + + I++ +P+ L ++ F + +LE L F YRARNF TL
Sbjct: 361 DVDLRLYDGFFGDADRMAMKIIQETAPQNLPALDLTFADNRLEPLFFRYRARNFPGTLDD 420
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI--LNALLMYGK 778
+E +RW ++R + F ++ + + E+ L ++ + K+ L AL Y +
Sbjct: 421 REQQRWLQHRRAVFTPER-----LQNYLSELSDLYQRHEDDKEKMTQLKALYAYAQ 471
>gi|290508687|ref|ZP_06548058.1| exodeoxyribonuclease I [Klebsiella sp. 1_1_55]
gi|289778081|gb|EFD86078.1| exodeoxyribonuclease I [Klebsiella sp. 1_1_55]
Length = 474
Score = 328 bits (841), Expect = 1e-86, Method: Composition-based stats.
Identities = 168/429 (39%), Positives = 246/429 (57%), Gaps = 7/429 (1%)
Query: 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKIT 372
FL++DYETFG + DRP QFAAIRTD LN I P + YCKPA D+LP P+A +IT IT
Sbjct: 10 FLFHDYETFGTSPSLDRPAQFAAIRTDAELNVIGEPEVFYCKPADDYLPQPQAVMITGIT 69
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
PQ L G E FA I +F P T VGYN + FDDE+TR +F+RN +PY W++
Sbjct: 70 PQEALAKGDNEAAFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRAT 492
+ SRWDL++V++A Y L P GITWP + G PSF+LEHL+ N + H+ AHDA++DV AT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGITWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVYAT 189
Query: 493 LGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPIC 552
+ +A+L++ PRLF+++ S R K+ + I P +P +++ MF + SL+ P+
Sbjct: 190 IAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAPLA 249
Query: 553 IHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIVI 610
HP N+N +I +L D L D + +R+ L + + PI ++HLN+ P V+
Sbjct: 250 WHPENRNAVIMVDLAGDMAPLLELDADALRERLYTSRAELGDLPAAPIKLVHLNKCP-VL 308
Query: 611 SNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL-ELNIDEE 669
+ L R + +N A + N + +K+ Y + N+D +
Sbjct: 309 AQANTLRPQDADRLGISIQRCLEN---AQLLRANPQVREKVVAVYAEAEPFVPSENVDAQ 365
Query: 670 LYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKR 729
LYN F S D + I+ P+ L ++ F +K++E L+F YRARNF TL E +R
Sbjct: 366 LYNGFFSDADRAAMKIVLETEPRNLPALDITFADKRIERLLFNYRARNFPGTLDEHEQQR 425
Query: 730 WKKYRISRF 738
W ++R F
Sbjct: 426 WLEHRRQVF 434
>gi|365850248|ref|ZP_09390714.1| exodeoxyribonuclease I [Yokenella regensburgei ATCC 43003]
gi|364567662|gb|EHM45317.1| exodeoxyribonuclease I [Yokenella regensburgei ATCC 43003]
Length = 489
Score = 328 bits (841), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 179/476 (37%), Positives = 263/476 (55%), Gaps = 22/476 (4%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG++ DRP QFAAIRTD N I P + YCKPA D+LP P+A ++T I
Sbjct: 24 TFLFHDYETFGISPSLDRPAQFAAIRTDADFNIIGEPEVFYCKPADDYLPQPQAVMVTGI 83
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L G E FA I +F P T VGYN + FDDE+TR +F+RN +PY W+
Sbjct: 84 TPQEALAKGENEAAFARRIHDLFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 143
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N+ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 144 NDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 203
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF+++ S R K + A I P +P +I+ MF + S + P+
Sbjct: 204 TIAMAKLVKTQQPRLFDYLWSHRGKHKLAALIDVPQMKPLVHISGMFGAWRGNTSWVAPL 263
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R+ L K +D +P+ ++HLN+ P V
Sbjct: 264 AWHPENRNAVIMVDLAGDVTPLLELDSDALRERLYTAKADLGDDAAVPVKLVHLNKCP-V 322
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL----- 664
++ L R + N+K + +N + K+ + +D E
Sbjct: 323 LAQGNTLRPEDADRLGINRQHCLDNLKL---LRDNPQVRDKVVAIF----ADAEPFVPSE 375
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E L+F YRARNF TL
Sbjct: 376 NVDAQLYNGFFSDADRAAMRIVLETEPRNLPALDITFADKRIERLLFNYRARNFPGTLDE 435
Query: 725 KELKRWKKYRISRFYNKKNNLY--NINMFYLEIESLLKKANEHDTKILNALLMYGK 778
E +RW ++R + F + Y + M Y + E N L AL Y +
Sbjct: 436 AEQQRWLEHRRNVFTPEFLQAYAQELEMLYGQYE-----GNNEKLGQLKALWQYAQ 486
>gi|308187438|ref|YP_003931569.1| exodeoxyribonuclease I [Pantoea vagans C9-1]
gi|308057948|gb|ADO10120.1| exodeoxyribonuclease I [Pantoea vagans C9-1]
Length = 475
Score = 328 bits (841), Expect = 1e-86, Method: Composition-based stats.
Identities = 171/472 (36%), Positives = 262/472 (55%), Gaps = 14/472 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + RDRP QFA +RTD N + P + YC+P D+LP P A +IT I
Sbjct: 9 TFLFHDYETFGTSPSRDRPAQFAGLRTDSEFNPVGEPEVFYCRPPDDYLPQPEAVMITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ ++ G+ E +FA I K+F T VGYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQIAMSRGVIEAEFAERIHKLFTTEQTCVVGYNNVRFDDEVTRNIFYRNFYDPYGWAWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++A Y L P GI WP G PSF+LEHL+ N ++H+ AHDA+SDV A
Sbjct: 129 NGNSRWDLLDVMRACYALRPDGINWPENEEGFPSFRLEHLTKANGVAHENAHDAMSDVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
TL +A+L++ P+LF+F+ + R K ++ I P +P +++ MF + S + P+
Sbjct: 189 TLAMAKLVKEKQPKLFDFLFTHRNKNKLMNLIDIPQMKPLVHVSGMFGAARGNTSWIVPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIV 609
HP N+N LI +L D L D + +R+ L KN + +P+ ++H+N+ P V
Sbjct: 249 AWHPDNRNALIVVDLAGDMSPLLQLDADTLRERLYTPKNDLGDLPAVPVKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK-INNSDLELNIDE 668
++ L R D N+ + +F + + SD ++D
Sbjct: 308 LAPASTLRPEDAARLGIDRQHCLANLALLRQQPDVREKLVTLFAEAEPFTPSD---DVDT 364
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
+LY+ F S D + I+R +P L ++ FE+ ++ +L+F YRARNF TL E +
Sbjct: 365 QLYDGFFSDADRAGMNIIRQTAPANLPALDLSFESARVAKLLFRYRARNFPGTLDDAEQQ 424
Query: 729 RWKKYRISRFYNKKNNLYNINMFYLEIESL--LKKANEHDTKILNALLMYGK 778
RW ++R + + + F E+E L L +A+ L AL +Y +
Sbjct: 425 RWLQHRREVLNSDR-----VQAFMQELEGLANLHEADAEKVGQLKALYLYAQ 471
>gi|302188463|ref|ZP_07265136.1| exonuclease I [Pseudomonas syringae pv. syringae 642]
Length = 476
Score = 328 bits (841), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 167/453 (36%), Positives = 260/453 (57%), Gaps = 15/453 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ WYDYET G+N R DR Q A IRTD LN I P+ L+C+ + D LP P AC+IT
Sbjct: 2 TSSIFWYDYETTGINPRNDRALQMAGIRTDTDLNEIAPPVNLHCQLSDDILPHPVACMIT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITP G+ E F + + PGT GYNT+ FDDE+TR+ F+RN +PY RE
Sbjct: 62 GITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI+V++A Y L P GI WP + +G+ + KLE L+ N + H +AHDALSDV
Sbjct: 122 WQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR P+L++++ +LR K+ V ++ + +P +I+ FS+ +Y+ ++
Sbjct: 181 RATIALARLIREKQPKLYDYLFALRSKQKVQEQVR--LMQPLVHISGRFSAARNYLGVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L D L D ++ L + ++ + +P+ ++H+NR
Sbjct: 239 PLAWHPHNRNALIVCDLHLDHSPLLHEDAEILKRRLYTRHDALGDGELPVPLKLLHINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIW-KKIFLDYKINNSDLELN 665
P VI+ L VL S R + D+ A + A+ + +W K+ Y ++ +
Sbjct: 299 P-VIAPLGVLRSEDQQRLQLDM--AGYQAR-ATQLSERREVWHDKLATVYGKDDFAASED 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY+ F+ +D +R P++L+ + F++ +L EL+F YRARNF +TLS +
Sbjct: 355 PEQQLYDGFMGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSGE 414
Query: 726 ELKRWKKYRISRF----YNKKNNLYNINMFYLE 754
E RW+ + R + N L++ +E
Sbjct: 415 EQTRWRDFCQQRLRSPEWGAPNTLHDFTAALIE 447
>gi|152996402|ref|YP_001341237.1| exodeoxyribonuclease I [Marinomonas sp. MWYL1]
gi|150837326|gb|ABR71302.1| Exodeoxyribonuclease I [Marinomonas sp. MWYL1]
Length = 484
Score = 328 bits (840), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 169/486 (34%), Positives = 276/486 (56%), Gaps = 10/486 (2%)
Query: 305 LLHNGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPR 364
+ +G ++F W+D+ET G + RDRP QFA IRTD+ N I PIM YC+ A D LP P
Sbjct: 1 MTSSGPTSFFWFDFETTGTDPARDRPMQFAGIRTDLDFNPIGEPIMFYCRLAEDVLPQPE 60
Query: 365 ACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLIN 424
ACL+T I+PQ G+ E +F +E +PGT ++GYNTI FDDE+ R+ F+RN I+
Sbjct: 61 ACLLTGISPQDANREGLCEAEFMQAVEAELSQPGTCALGYNTIRFDDEVVRYGFYRNFID 120
Query: 425 PYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHD 484
PY REW+NNCSRWD+I++++ Y + P GI WP +G+ S KLE L+ N ++H++AHD
Sbjct: 121 PYTREWQNNCSRWDMIDLVRMTYAMRPEGIVWPKNEDGQVSMKLEALTKANGIAHEQAHD 180
Query: 485 ALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSY 544
ALSDV T+ +A+LIR+ P+LF + +R+K + I +PF +I+ MF +Y
Sbjct: 181 ALSDVYGTIEIAKLIRSKQPKLFAYYFKMRQKHELQQFIDVVRLKPFLHISGMFGQAKNY 240
Query: 545 ISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFK--EDIPISMIH 602
+ + PI HP NKN +I ++L+ D + + + +IR + ++ E +P+ +IH
Sbjct: 241 AAFVVPIAPHPTNKNGVIIFDLMADAQPLIDLSVEEIRHRVFTRQEELGDLERLPLKVIH 300
Query: 603 LNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL 662
N+SP V + +++ R D + N+ + I + + K+ + + +
Sbjct: 301 YNKSPAVAPATFLKDVDVVKRLALDGSVCRHNL---AIIKGHAGLAAKLSDVFMQEDRPI 357
Query: 663 ELNIDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
+ D LY+ F S++D +++ +RS +LS + F++++L E++ Y RN+ +
Sbjct: 358 HKDPDVMLYSGGFFSREDRVRMEKIRSTPANQLSELAMSFDDRRLPEMLMRYIGRNYPDQ 417
Query: 722 LSYKELKRWKKYRISRFYNKKNNLYNINM-FYLEIESLLKKANEHDTKILNALLMYGKID 780
LS ++ W++YR R K +INM Y E +L+ A D +++ D
Sbjct: 418 LSEQQQFEWEEYRQVRLLEKDGG-GSINMEQYFERLNLI--AQTPDLSPAEQVMLQDLAD 474
Query: 781 GSSCIY 786
+ IY
Sbjct: 475 YAQSIY 480
>gi|422680580|ref|ZP_16738851.1| exonuclease I [Pseudomonas syringae pv. tabaci ATCC 11528]
gi|331009925|gb|EGH89981.1| exonuclease I [Pseudomonas syringae pv. tabaci str. ATCC 11528]
Length = 434
Score = 328 bits (840), Expect = 2e-86, Method: Composition-based stats.
Identities = 165/427 (38%), Positives = 254/427 (59%), Gaps = 11/427 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
S+ WYDYET G+N R DR Q A IRTD LN I P+ L+C+ + D LP P AC+IT
Sbjct: 3 SSIFWYDYETTGINPRNDRALQMAGIRTDTELNEIAPPVNLHCQLSDDILPHPVACMITG 62
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP G+ E F + + PGT GYNT+ FDDE+TR+ F+RN +PY REW
Sbjct: 63 ITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAREW 122
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+V++A Y L P GI WP + +G+ + KLE L+ N + H +AHDALSDVR
Sbjct: 123 QGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSDVR 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARLIR P+L++++ +LR K+ V ++ + +P +I+ FS+ +Y+ ++ P
Sbjct: 182 ATIALARLIREKQPKLYDYLFALRSKQKVQEQV--RLMQPLVHISGRFSAARNYLGVVLP 239
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP N+N LI +L DP L +D ++ L + + E +P+ ++H+NR P
Sbjct: 240 LAWHPHNRNALIVCDLHLDPSPLLQDDAEILKQRLYTRHEALGEGELPVPLKLLHINRCP 299
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELNI 666
VI+ L VL S R + D+ A+ + + +W+ K+ + Y + +
Sbjct: 300 -VIAPLGVLRSEDQQRLQLDMEGYQAR---ATQLSESREVWQDKLSVLYGKEDFAASEDP 355
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+++LY+ FI +D +R P++L+ + F++ +L EL+F YRARNF +TLS +E
Sbjct: 356 EQQLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSSEE 415
Query: 727 LKRWKKY 733
+RW+ +
Sbjct: 416 QQRWQDF 422
>gi|358410652|gb|AEU10041.1| exonuclease I [Photobacterium damselae subsp. piscicida]
Length = 473
Score = 328 bits (840), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 171/426 (40%), Positives = 245/426 (57%), Gaps = 8/426 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+ W DYETFG + DRP QFA IRTD+ LN I P+++YCKP D+LP P ACLIT I
Sbjct: 8 SLYWIDYETFGASPATDRPCQFAGIRTDMDLNIIGEPLVIYCKPPHDYLPSPEACLITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+ E +F + I + KP T VGYN + FDDE+TR+ +RN +PY W+
Sbjct: 68 TPQEANEKGLSEPEFIARIHEELSKPNTCVVGYNNVRFDDEVTRYTLYRNFYDPYGWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
SRWDL+++++ Y L P GI WP + G PSFKLE LS N + H AHDA++D+ A
Sbjct: 128 QGNSRWDLLDIMRTCYALRPDGINWPTDDEGLPSFKLEKLSVANGIEHSNAHDAMADMYA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ N P+LF+++ + R K + I P ++T MF + S + PI
Sbjct: 188 TIEMAKLVKQNQPKLFDYLFNNRHKNKLQQLIDVVNLTPLVHVTGMFGTVCGNTSWIVPI 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN +IT NL DP + D IR L K+ D IP+ +HLN+ PI
Sbjct: 248 AWHPDNKNAVITINLAQDPTPLIELDSETIRTRLYTKRTDLAADELPIPLKEVHLNKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++N R D KN+ + I + I +K+ + + D N+D
Sbjct: 308 -LAPAKTLTANDADRLDIDREQCLKNL---ALIKQHPEIREKVLEVFSVKREFDNHDNVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY+ F S D L I+R +P++L+N+ +K+++ L+F YRARNF TLSY+E
Sbjct: 364 AMLYDGFFSHADRAALDIIRETAPEELANLQLEVADKRIKPLLFRYRARNFPMTLSYEEQ 423
Query: 728 KRWKKY 733
RWK +
Sbjct: 424 TRWKHH 429
>gi|443468901|ref|ZP_21059107.1| Exodeoxyribonuclease I [Pseudomonas pseudoalcaligenes KF707]
gi|442898150|gb|ELS24936.1| Exodeoxyribonuclease I [Pseudomonas pseudoalcaligenes KF707]
Length = 476
Score = 328 bits (840), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 168/466 (36%), Positives = 261/466 (56%), Gaps = 12/466 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ W+DYET G+N R DRP Q A IRTD LN I PI LYC+P+ D LP P ACL+T
Sbjct: 2 TSSIFWHDYETTGINPRCDRPLQVAGIRTDEALNEIGEPINLYCRPSDDILPHPAACLVT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
I P G+ E +F + PGT GYN++ FDDE+TR+ +RN +PY RE
Sbjct: 62 GILPGTLAEKGLGEAEFMHRVHAELSLPGTCGAGYNSLRFDDEVTRYSLYRNFYDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI++++ Y L P GI WP + +G+ S +LE L+ N + H +AHDALSDV
Sbjct: 122 WQGGNSRWDLIDLMRTAYALRPEGIEWP-QQDGRVSLRLELLTAANGIDHGQAHDALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARL+R P+LF+++ LR K V ++ + +P +I+ FS++ ++S+
Sbjct: 181 RATIALARLVRQRQPKLFDYLFQLRSKHKVQDQVR--LLQPLVHISGRFSAERHFLSVSL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N L+ +L DP L ++R L +++ E +P+ ++H+NR
Sbjct: 239 PLAWHPRNRNALVVLDLQADPAPLLELSAEQLRQRLYTRRDELAEGELPVPLKLLHINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELN 665
P V++ L VL R DL + A+ ++ +W+ K+ + Y +
Sbjct: 299 P-VVAPLNVLREGDRQRLGVDLELCQRR---AALLVEEAPLWQPKLPILYAEEAFTALDD 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY+ F+ +D +R P++L N+ F++ +L EL+F YRARNF ETLS
Sbjct: 355 PEQQLYDGFLGDRDRRLCEQVRRADPQRLGLENWPFDDPRLPELLFRYRARNFPETLSEV 414
Query: 726 ELKRWKKYRISRFYNKKNNLYN-INMFYLEIESLLKKANEHDTKIL 770
+ RW ++ +R + + N + F+ +E KA +L
Sbjct: 415 DRSRWVEFCRNRLKSPEFGAPNTLESFFQALEEFQSKAEPAQQAVL 460
>gi|440722683|ref|ZP_20903059.1| exonuclease I [Pseudomonas syringae BRIP34876]
gi|440725747|ref|ZP_20906009.1| exonuclease I [Pseudomonas syringae BRIP34881]
gi|440360936|gb|ELP98187.1| exonuclease I [Pseudomonas syringae BRIP34876]
gi|440367890|gb|ELQ04936.1| exonuclease I [Pseudomonas syringae BRIP34881]
Length = 476
Score = 328 bits (840), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 167/453 (36%), Positives = 260/453 (57%), Gaps = 15/453 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ WYDYET G+N R DR Q A IRTD LN I P+ L+C+ + D LP P AC+IT
Sbjct: 2 TSSIFWYDYETTGINPRNDRALQMAGIRTDTDLNEIAPPVNLHCQLSDDILPHPVACMIT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITP G+ E F + + PGT GYNT+ FDDE+TR+ F+RN +PY RE
Sbjct: 62 GITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI+V++A Y L P GI WP + +G+ + KLE L+ N + H +AHDALSDV
Sbjct: 122 WQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR P+L++++ +LR K+ V ++ + +P +I+ FS+ +Y+ ++
Sbjct: 181 RATIALARLIREKQPKLYDYLFALRSKQKVQEQVR--LMQPLVHISGRFSAARNYLGVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L D L ++ L + ++ + +P+ ++H+NR
Sbjct: 239 PLAWHPHNRNALIVCDLHLDHSPLLHEGAETLKRRLYTRHDALGDGELPVPLKLLHINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIW-KKIFLDYKINNSDLELN 665
P VI+ L VL S R + D+ A + A+ + +W K+ Y ++ +
Sbjct: 299 P-VIAPLGVLRSEDQQRLQLDM--AGYQAR-AAQLSERREVWHDKLAAVYGKDDFVASED 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY+ FI +D +R P++L+ + F++ +L EL+F YRARNF +TLS +
Sbjct: 355 PEQQLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSGE 414
Query: 726 ELKRWKKYRISRF----YNKKNNLYNINMFYLE 754
E RW+ + R + N L++ ++E
Sbjct: 415 EQTRWRDFCQQRLRSPEWGAPNTLHDFTAAWVE 447
>gi|53803521|ref|YP_114798.1| exonuclease I [Methylococcus capsulatus str. Bath]
gi|53757282|gb|AAU91573.1| exodeoxyribonuclease I [Methylococcus capsulatus str. Bath]
Length = 478
Score = 327 bits (839), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 177/481 (36%), Positives = 261/481 (54%), Gaps = 18/481 (3%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
G +F WYD ETFG + RDR QFA +RTD+ N I P +LYC+P+ D +P P ACL
Sbjct: 2 GGAPSFYWYDLETFGTDPARDRIAQFAGLRTDLEFNPIGPPDVLYCRPSDDMVPYPDACL 61
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
+T ITPQ+ G+PE F + I +IF++PGT +GYNT+ FDDE+ R F+RNL +PY
Sbjct: 62 VTGITPQYAAELGVPESAFIATIHRIFMRPGTCVLGYNTLRFDDEMLRHAFYRNLYDPYA 121
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
REWK SRWD+I++ + L P GI WP + G P FKLE L+ N + H+ AHDALS
Sbjct: 122 REWKGGNSRWDVIDLARLTQALRPDGIEWPRDSLGSPVFKLERLAAANGIRHESAHDALS 181
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYV---LAEIGWPIARPFFYITHMFSSKHSY 544
DVRAT+ ARLI PRLF F L R K V LA W +P +++ FS+
Sbjct: 182 DVRATVAFARLIAERQPRLFQFALESRAKGAVERLLALGAW---QPVLHVSEKFSASRHC 238
Query: 545 ISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMI 601
I+ + P+C HP +I ++L DP + +++IR L +P+ +
Sbjct: 239 IACVLPLCRHPRIATRVIVFDLASDPAQLSDLSVDEIRRRLFTPSAELPAATGRLPLKGV 298
Query: 602 HLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSD 661
H NR P+V+ + L R D + + + I KI ++++ S
Sbjct: 299 HTNRCPVVVP-MSALRPADGERLGIDAVLCRRRARWLQDHAED--IIPKISAAFEVDAS- 354
Query: 662 LELNIDEELY---NNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNF 718
E D EL FI D L + ++P +L++ F + + +EL+F +RARNF
Sbjct: 355 FEAASDPELMLYRGGFIPDADRRALDQVHRLTPDQLAHYRPRFVDGRFDELLFRFRARNF 414
Query: 719 IETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK-ILNALLMYG 777
ETL+ +E +RW +R +R L ++ F+ I+ L + ++ + IL+AL +YG
Sbjct: 415 PETLNAEERERWTAFRRARLAGIGGGL-SLAEFFSRIDRLRSQESDAGKRAILDALEVYG 473
Query: 778 K 778
+
Sbjct: 474 R 474
>gi|422637736|ref|ZP_16701168.1| exonuclease I [Pseudomonas syringae Cit 7]
gi|330950132|gb|EGH50392.1| exonuclease I [Pseudomonas syringae Cit 7]
Length = 476
Score = 327 bits (839), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 166/446 (37%), Positives = 258/446 (57%), Gaps = 15/446 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ WYDYET G+N R DR Q A IRTD LN I P+ L+C+ + D LP P AC+IT
Sbjct: 2 TSSIFWYDYETTGINPRSDRALQMAGIRTDTDLNEIAAPVNLHCQLSDDILPHPAACMIT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITP G+ E F + + PGT GYNT+ FDDE+TR+ F+RN +PY RE
Sbjct: 62 GITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI+V++A Y L P GI WP + +G+ + KLE L+ N + H +AHDALSDV
Sbjct: 122 WQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR P+L+++ +LR K+ V ++ + +P +I+ FS+ +Y+ ++
Sbjct: 181 RATIALARLIREKQPKLYDYFFALRSKQKVQEQVR--LMQPLVHISGRFSAARNYLGVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L D L D ++ L + ++ + +P+ ++H+NR
Sbjct: 239 PLAWHPHNRNALIVCDLHLDHSPLLHEDAEILKRRLYTRHDALGDGELPVPLKLLHINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIW-KKIFLDYKINNSDLELN 665
P VI+ L VL S R + D+ A + A+ + + +W K+ Y ++ +
Sbjct: 299 P-VIAPLGVLRSEDQQRLQLDM--AGYQAR-ATQLSEHREVWHDKLAAVYGKDDFAASED 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY+ F+ +D +R P++L+ + F++ +L EL+F YRARNF +TLS +
Sbjct: 355 PEQQLYDGFMGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSGE 414
Query: 726 ELKRWKKYRISRF----YNKKNNLYN 747
E RW+ + R + N L++
Sbjct: 415 EQTRWRDFCQQRLRSPEWGAPNTLHD 440
>gi|395232854|ref|ZP_10411101.1| exonuclease I [Enterobacter sp. Ag1]
gi|394732634|gb|EJF32291.1| exonuclease I [Enterobacter sp. Ag1]
Length = 475
Score = 327 bits (839), Expect = 2e-86, Method: Composition-based stats.
Identities = 178/476 (37%), Positives = 264/476 (55%), Gaps = 20/476 (4%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
+TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A +IT
Sbjct: 8 ATFLFHDYETFGKSPSLDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPEAVMITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ L +G E FA I IF P T VGYN + FDDE+TR +F+RN +PY W
Sbjct: 68 ITPQQALAHGENEAAFAKRIHDIFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+N+ SRWDL++V++A Y L P GI WP +G PSF+LEHL+ N + H AHDA+SDV
Sbjct: 128 QNDNSRWDLLDVMRACYALRPEGIVWPENEDGLPSFRLEHLTKANGIEHANAHDAMSDVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF ++ S R K+ + I P +P +++ MF ++ S + P
Sbjct: 188 ATIAMAQLVKTRQPRLFEYLYSHRSKQKLQTLIDIPQMKPLVHVSGMFGAQRGNTSWIAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D +R+ L K ++ +PI ++HLN+ P
Sbjct: 248 LAWHPDNRNAVIMVDLAGDISPLLALDAATLRERLYTPKAELGDNAAVPIKLVHLNKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINN----SDLEL 664
V++ L R + N+K + + + +K+ + SD
Sbjct: 307 VLAVANTLRPEDAERLGINRQQCLDNLKV---LREHPEVREKVVALFAEAEPFVPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARN+ TLS
Sbjct: 361 NVDAQLYNGFFSDADRAAMRIVLQTDPQNLPALDITFADKRIEKLLFNYRARNWPGTLSE 420
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKK--ANEHDTKILNALLMYGK 778
E RW +YR + + + LE+ESL + ++ +L +L Y +
Sbjct: 421 DEQNRWLQYRRDVLSQEA-----LQAYALELESLYNQHEGDKEKMALLKSLFEYAQ 471
>gi|408480152|ref|ZP_11186371.1| exonuclease I [Pseudomonas sp. R81]
Length = 475
Score = 327 bits (839), Expect = 2e-86, Method: Composition-based stats.
Identities = 162/427 (37%), Positives = 251/427 (58%), Gaps = 11/427 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ WYDYET G+N R DRP Q A IRTD+ LN I P+ LYC+P+ D LP P AC IT
Sbjct: 2 TSIFWYDYETTGINPRSDRPLQVAGIRTDLELNEIGEPVNLYCQPSDDILPHPVACAITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPAILAEKGLAEADFMTRVHAQLAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+VI+ Y L P GI WP + +G+ + KLE L+ N + H +AHDALSDVR
Sbjct: 122 QGGNSRWDLIDVIRTAYALRPEGIEWP-QQDGRVTLKLERLTEANGIDHGQAHDALSDVR 180
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LAR +R P+L+ ++ LR K+ V+ ++ + +P +I+ FS++ Y+ ++ P
Sbjct: 181 ATIALARRVREKQPKLYEWLFQLRSKQRVMDQV--RLLQPMVHISGRFSAERHYLGVVLP 238
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP N+N LI +L DP+ L D + +R L ++ E +P+ ++++NR P
Sbjct: 239 LAWHPRNRNALIVCDLGLDPQGLLDLDADTLRQRLYTRREDLAEGELPVPLKLVYINRCP 298
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELNI 666
V++ L VL + R D+N + A + + +W+ K+ Y +
Sbjct: 299 -VVAPLNVLRTEDRERLHLDMNIYQER---ALRLTDAQEVWRDKLAAVYAEEGFASSSDP 354
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+++LY+ FI +D +R+ P +L+ + F++ +L EL+F YRARNF +TL+ +E
Sbjct: 355 EQQLYDGFIGDRDRRLCEQVRTAEPAQLARQQWPFDDHRLPELLFRYRARNFPDTLNSEE 414
Query: 727 LKRWKKY 733
+RW+ +
Sbjct: 415 QQRWQLF 421
>gi|417712973|ref|ZP_12361945.1| exodeoxyribonuclease I [Shigella flexneri K-272]
gi|417717791|ref|ZP_12366695.1| exodeoxyribonuclease I [Shigella flexneri K-227]
gi|420320845|ref|ZP_14822676.1| exodeoxyribonuclease I [Shigella flexneri 2850-71]
gi|333003504|gb|EGK23045.1| exodeoxyribonuclease I [Shigella flexneri K-272]
gi|333017330|gb|EGK36648.1| exodeoxyribonuclease I [Shigella flexneri K-227]
gi|391248519|gb|EIQ07758.1| exodeoxyribonuclease I [Shigella flexneri 2850-71]
Length = 474
Score = 327 bits (839), Expect = 2e-86, Method: Composition-based stats.
Identities = 168/433 (38%), Positives = 251/433 (57%), Gaps = 13/433 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP PRA LIT I
Sbjct: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPRPRAVLITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P+
Sbjct: 189 TIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLAHVSGMFGAWRGNTSWVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N +I +L D L DI+ +R+ L K ++ +P+ ++H+N+ P V
Sbjct: 249 AWHPENRNAVIMADLAGDISPLLELDIDTLRERLYTAKADLGDNAAVPVKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLELN 665
++ L R + N+K + N + +K+ + SD N
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD---N 361
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 VDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYA 421
Query: 726 ELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 EQQRWLEHRHQVF 434
>gi|298156950|gb|EFH98040.1| Exodeoxyribonuclease I [Pseudomonas savastanoi pv. savastanoi NCPPB
3335]
Length = 437
Score = 327 bits (839), Expect = 2e-86, Method: Composition-based stats.
Identities = 165/427 (38%), Positives = 254/427 (59%), Gaps = 11/427 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
S+ WYDYET G+N R DR Q A IRTD LN I P+ L+C+ + D LP P AC+IT
Sbjct: 3 SSIFWYDYETTGINPRNDRALQMAGIRTDTELNEIAPPVNLHCQLSDDILPHPVACMITG 62
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP G+ E F + + PGT GYNT+ FDDE+TR+ F+RN +PY REW
Sbjct: 63 ITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYAREW 122
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+V++A Y L P GI WP + +G+ + KLE L+ N + H +AHDALSDVR
Sbjct: 123 QGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSDVR 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARLIR P+L++++ +LR K+ V ++ + +P +I+ FS+ +Y+ ++ P
Sbjct: 182 ATIALARLIREKQPKLYDYLFALRSKQKVQEQV--RLMQPLVHISGRFSAARNYLGVVLP 239
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP N+N LI +L DP L +D ++ L + + E +P+ ++H+NR P
Sbjct: 240 LAWHPHNRNALIVCDLHLDPSPLLQDDAEILKQRLYTRHEALGEGELPVPLKLLHINRCP 299
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELNI 666
VI+ L VL S R + D+ A+ + + +W+ K+ + Y + +
Sbjct: 300 -VIAPLGVLRSEDQQRLQLDMAGYQAR---ATQLSESREVWQDKLSVLYGKEDFAASEDP 355
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+++LY+ FI +D +R P++L+ + F++ +L EL+F YRARNF +TLS +E
Sbjct: 356 EQQLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSSEE 415
Query: 727 LKRWKKY 733
+RW+ +
Sbjct: 416 QQRWQDF 422
>gi|372274884|ref|ZP_09510920.1| exonuclease I [Pantoea sp. SL1_M5]
Length = 475
Score = 327 bits (839), Expect = 3e-86, Method: Composition-based stats.
Identities = 172/472 (36%), Positives = 259/472 (54%), Gaps = 14/472 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + RDRP QFA +RTD N + P + YC+P D+LP P A +IT I
Sbjct: 9 TFLFHDYETFGTSPSRDRPAQFAGLRTDSEFNPVGEPEVFYCRPPDDYLPQPEAVMITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ ++ G+ E +FA I +F T VGYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQIAMSRGVIEAEFAERIHALFTTEQTCVVGYNNVRFDDEVTRNIFYRNFYDPYGWAWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++A Y L P GI WP G PSF+LEHL+ N +SH+ AHDA+SDV A
Sbjct: 129 NGNSRWDLLDVMRACYALRPEGINWPENEEGFPSFRLEHLTKANGVSHENAHDAMSDVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
TL +A+L++ P+LF F+ + R K ++ I P +P +++ MF + S + P+
Sbjct: 189 TLAMAKLVKEKQPKLFEFLFTHRNKNKLMNLIDIPQMKPLVHVSGMFGAARGNTSWIVPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIV 609
HP N+N LI +L D L D + +R+ L KN + +P+ ++H+N+ P V
Sbjct: 249 AWHPDNRNALIVVDLAGDMSPLLQLDADTLRERLYTPKNDLGDLPAVPVKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK-INNSDLELNIDE 668
++ L R D N+ + +F + + SD ++D
Sbjct: 308 LAPASTLRPEDAARLNIDRQHCLANLALLRQQPDVREKLVTLFAEAEPFTPSD---DVDT 364
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
+LY+ F S D + I+R +P L ++ FE+ ++ +L+F YRARNF TL E +
Sbjct: 365 QLYDGFFSDADRAGMNIIRQTAPANLPALDLSFESARVAKLLFRYRARNFPGTLDDTEQQ 424
Query: 729 RWKKYRISRFYNKKNNLYNINMFYLEIESL--LKKANEHDTKILNALLMYGK 778
RW ++R N + F E+E L L +A+ L AL +Y +
Sbjct: 425 RWLQHRRDVL-----NADRVQAFMQELEGLANLHEADAEKVGQLKALYLYAQ 471
>gi|145632876|ref|ZP_01788609.1| exodeoxyribonuclease I [Haemophilus influenzae 3655]
gi|145634313|ref|ZP_01790023.1| exodeoxyribonuclease I [Haemophilus influenzae PittAA]
gi|229844163|ref|ZP_04464304.1| exonuclease I [Haemophilus influenzae 6P18H1]
gi|319776340|ref|YP_004138828.1| exonuclease I [Haemophilus influenzae F3047]
gi|329123492|ref|ZP_08252056.1| exodeoxyribonuclease I [Haemophilus aegyptius ATCC 11116]
gi|144986532|gb|EDJ93098.1| exodeoxyribonuclease I [Haemophilus influenzae 3655]
gi|145268293|gb|EDK08287.1| exodeoxyribonuclease I [Haemophilus influenzae PittAA]
gi|229813157|gb|EEP48845.1| exonuclease I [Haemophilus influenzae 6P18H1]
gi|317450931|emb|CBY87157.1| exonuclease I [Haemophilus influenzae F3047]
gi|327471074|gb|EGF16529.1| exodeoxyribonuclease I [Haemophilus aegyptius ATCC 11116]
Length = 473
Score = 327 bits (839), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 175/459 (38%), Positives = 258/459 (56%), Gaps = 18/459 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YDYE+FG+N DRP QFA IRTD N I PIM YCK D+LP P A ++T I
Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C G+ E +FA+ I F +P T +GYN I +DDE+TR+ F+RN I+PYE WK
Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI W Y ++G PSF+LE L+ N + H+ AHDA++DV A
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF + R KK + + P +++ M + + + P+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPL 245
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLNRSP 607
HP N+N LI +L D L +++R L KK+ +E +P+ ++H+N+ P
Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSKLEERGVSSVPLKLVHINKCP 305
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
I ++ K L R D N+ + + IF + + S+ N++
Sbjct: 306 I-LAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASN--DNVE 362
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
ELYN F S D +AILRS+ +KLS FE+K++ EL+F YRAR+F +TL+ E
Sbjct: 363 TELYNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQ 422
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLKK-ANEH 765
+WKKYR ++ +E ES L++ A EH
Sbjct: 423 IKWKKYRQNKLEKSA----------VEFESSLQRLAEEH 451
>gi|440758354|ref|ZP_20937524.1| Exodeoxyribonuclease I [Pantoea agglomerans 299R]
gi|436427963|gb|ELP25630.1| Exodeoxyribonuclease I [Pantoea agglomerans 299R]
Length = 475
Score = 327 bits (839), Expect = 3e-86, Method: Composition-based stats.
Identities = 171/472 (36%), Positives = 261/472 (55%), Gaps = 14/472 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + RDRP QFA +RTD N + P + YC+P D+LP P A +IT I
Sbjct: 9 TFLFHDYETFGTSPSRDRPAQFAGLRTDSEFNPVGEPDVFYCRPPDDYLPQPEAVMITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ ++ G+ E +FA I +F T VGYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQIAMSRGMIEAEFAERIHTLFTTEQTCVVGYNNVRFDDEVTRNIFYRNFYDPYGWAWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++A Y L P GI WP G PSF+LEHL+ N ++H+ AHDA+SDV A
Sbjct: 129 NGNSRWDLLDVMRACYALRPDGIIWPENEEGFPSFRLEHLTKANGVAHENAHDAMSDVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
TL +A+L++ P+LF F+ + R K ++ I P +P +++ MF + S + P+
Sbjct: 189 TLAMAKLVKEKQPKLFEFLFTHRNKNKLMNLIDIPQMKPLVHVSGMFGAARGNTSWIVPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIV 609
HP N+N LI +L D L D++ +R+ L KN + +P+ ++H+N+ P V
Sbjct: 249 AWHPDNRNALIVVDLAGDMSPLLQLDVDTLRERLFTPKNDLGDLPPVPVKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK-INNSDLELNIDE 668
++ L R D N+ + +F + + SD ++D
Sbjct: 308 LAPASTLRPEDAARLGIDRQHCLANLALLRQQPDVREKLVTLFAEAEPFTPSD---DVDT 364
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
+LY+ F S D + I+R +P L ++ FE+ ++ +L+F YRARNF TL E +
Sbjct: 365 QLYDGFFSDADRAGMNIIRQTAPANLPALDLSFESARVAKLLFRYRARNFPGTLDDAEQQ 424
Query: 729 RWKKYRISRFYNKKNNLYNINMFYLEIESL--LKKANEHDTKILNALLMYGK 778
RW ++R N ++ F E+E L L +A+ L AL +Y +
Sbjct: 425 RWLQHRREVL-----NAERVSAFMQELEGLANLHEADAEKVGQLKALYLYAQ 471
>gi|410664159|ref|YP_006916530.1| exonuclease I [Simiduia agarivorans SA1 = DSM 21679]
gi|409026516|gb|AFU98800.1| exonuclease I [Simiduia agarivorans SA1 = DSM 21679]
Length = 474
Score = 327 bits (839), Expect = 3e-86, Method: Composition-based stats.
Identities = 164/437 (37%), Positives = 253/437 (57%), Gaps = 14/437 (3%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ W+DYET+G +D+P QFA +RTD LN I P+M+Y KP D LP P ACLIT
Sbjct: 2 TSLYWHDYETWGATPAKDKPAQFAGVRTDEALNIIGEPLMIYAKPTADLLPQPEACLITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ L G+PE F + I F PGT +VGYN++ FD E+TR+ +RN +PY EW
Sbjct: 62 ITPQKALAEGLPEPAFMARIHAEFAVPGTCAVGYNSLRFDGEVTRYGLYRNFYDPYRTEW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI++ + Y L P GI WP + +G PSFKLEHLS N H AHDALSDV
Sbjct: 122 ADGNSRWDLIDLARMTYALRPDGIEWPLREDGSPSFKLEHLSAANGFEHANAHDALSDVY 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARLIR P+L+++ +LR K++ W P + + F + +L+ P
Sbjct: 182 ATIDLARLIRARQPKLYDYAFALRDKRHAGQMFDWVKRTPVLHTSSRFPAARGCTALVMP 241
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFK----EDIPISMIHLNRS 606
+ HP NKN +I ++L DP L D +R+ L + + I + ++HLN+S
Sbjct: 242 LATHPTNKNAVIVYDLSVDPSALLTLDAETVRERLYTAGDVLAAQGLDSIALKLVHLNKS 301
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCA---FKNIKCASSILNNTYIWKKIFLDYKINNSDLE 663
P+ +S + VL+ L R + D+ A +K + A ++ + K++ + +
Sbjct: 302 PM-LSPVSVLTPALEQRLQLDMATARQHWKQLATADAVALQAKL-AKVYGESGFAEPN-- 357
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
+ +++LY FI +D +A + ++ P +L++++ F++++L +L+ YRAR+F ETL+
Sbjct: 358 -DPEQQLYGGFIPDQDKNAMARVHTVEPHQLASIH--FDDRRLSKLLSRYRARHFPETLT 414
Query: 724 YKELKRWKKYRISRFYN 740
E W+++R R N
Sbjct: 415 PDEQLAWEEWRYERLTN 431
>gi|410861335|ref|YP_006976569.1| exodeoxyribonuclease I [Alteromonas macleodii AltDE1]
gi|410818597|gb|AFV85214.1| exodeoxyribonuclease I [Alteromonas macleodii AltDE1]
Length = 495
Score = 327 bits (838), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 178/482 (36%), Positives = 274/482 (56%), Gaps = 11/482 (2%)
Query: 304 ILLHNGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDP 363
I HN N TFLW+D+ETFG + ++D P QFAA+RTD+ LN + PI + A D+LP P
Sbjct: 16 ISEHNYNETFLWHDFETFGTSPQKDLPCQFAAVRTDMDLNVVGKPINIMSAIANDYLPHP 75
Query: 364 RACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLI 423
ACL+T ITPQ + +G E FA+ I P T SVG+N+I FDDE++R++F+RN
Sbjct: 76 EACLVTGITPQQTIRDGSNEADFAAKIYHEMSTPNTCSVGFNSIRFDDEVSRYLFYRNFY 135
Query: 424 NPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAH 483
+PY REW+N SRWD+I+V +A Y L P GI WP + +G PSF+LE L+ NN+ H AH
Sbjct: 136 DPYSREWRNGNSRWDIIDVARACYALRPDGINWPLREDGSPSFRLEALTAANNIGHDNAH 195
Query: 484 DALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHS 543
DAL+DV AT+ LA+LI+ PRLF++ LSLR K V+ +I +I+ +
Sbjct: 196 DALNDVYATISLAKLIKEKQPRLFDYALSLRNKHTVMQQIDLSKPSVLLHISSKLPASQG 255
Query: 544 YISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSF---KEDIPISM 600
+ + PI HP N N I +L HD L + ++I+ L +++ +E + +
Sbjct: 256 CCTWVMPIAKHPTNSNAFIVIDLSHDIDSVLNDSADEIKQALYAPSDTYDDARERPGLKL 315
Query: 601 IHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS 660
IH+NRSP I+ K ++ + R D N K +S + + KI Y+
Sbjct: 316 IHVNRSPF-ITTAKAMTEDNAQRLGLDRERCLDNYKKLASTPD---LVSKIVAIYEEERH 371
Query: 661 DLELNIDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFI 719
EL+ID LY+ F+S +D + + P+ L+ +++ L++L+F YRARN+
Sbjct: 372 SSELDIDHALYSGGFLSDEDRRWCENVINAKPEDLATFGDKTQHEGLKKLLFRYRARNYP 431
Query: 720 ETLSYKELKRWKKYRISRFYNKK-NNLYNINMFYLEIESLLKKANEHDTK--ILNALLMY 776
TL+ E+ +W+ +R +R + + + + + +ESL + +++ K IL AL Y
Sbjct: 432 NTLTADEMAKWQYHRQARLTDPDFHGSITLENYMMRLESLAHEHSDNPEKQAILRALYQY 491
Query: 777 GK 778
+
Sbjct: 492 AE 493
>gi|417828341|ref|ZP_12474897.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Shigella flexneri J1713]
gi|335575332|gb|EGM61628.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Shigella flexneri J1713]
Length = 474
Score = 327 bits (838), Expect = 3e-86, Method: Composition-based stats.
Identities = 168/433 (38%), Positives = 251/433 (57%), Gaps = 13/433 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP PRA LIT I
Sbjct: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPRPRAVLITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P+
Sbjct: 189 TIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLAHVSGMFGAWRGNTSWVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N +I +L D L DI+ +R+ L K ++ +P+ ++H+N+ P V
Sbjct: 249 AWHPENRNAVIMADLAGDISPLLELDIDTLRERLYTAKADLGDNAAVPVKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLELN 665
++ L R + N+K + N + +K+ + SD N
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLNNLKI---LRENPQVREKVVAIFAEAEPFTPSD---N 361
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 VDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYA 421
Query: 726 ELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 EQQRWLEHRHQVF 434
>gi|291326156|ref|ZP_06123420.2| exodeoxyribonuclease I [Providencia rettgeri DSM 1131]
gi|291315456|gb|EFE55909.1| exodeoxyribonuclease I [Providencia rettgeri DSM 1131]
Length = 479
Score = 327 bits (838), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 172/473 (36%), Positives = 266/473 (56%), Gaps = 16/473 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF +DYETFG DRP QFA +RTD+ N I+ P + YC PA D+LP P A +IT I
Sbjct: 13 TFFIHDYETFGKRPALDRPAQFAGVRTDLDFNIIEEPEVFYCAPADDYLPQPEAVMITGI 72
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L+ G+ E +FA I F P T +GYN I FDDE+TR +F+RN +PY W+
Sbjct: 73 TPQVALSQGVNEAEFAKRIHAAFSVPNTCIMGYNNIRFDDEVTRNIFYRNFYDPYAYSWQ 132
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
SRWDL++ ++A + L P G+ WP +G PS +LEHL+ N ++H+ AHDA+SDV A
Sbjct: 133 QGNSRWDLLDTLRACFALRPEGLQWPENEDGLPSMRLEHLTKANGVAHENAHDAMSDVLA 192
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PR+F++ LR K + I P +++ MF + SY+SL+ P+
Sbjct: 193 TINMAKLLKAAQPRMFDYFYQLRNKNKISQLIDIVEITPLVHVSGMFGALRSYVSLVAPL 252
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSF--KEDIPISMIHLNRSPIV 609
HP NKN +I +L D + D+ ++R L K +P+ ++H+N+ PI+
Sbjct: 253 AWHPDNKNAVIMCDLSADISPLVELDVQQLRTRLYTPKAELAGASPVPVKLVHINKCPIL 312
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYKI-NNSDLELN 665
K L R D + +N++ ++ N I K +F + ++ SD +
Sbjct: 313 APE-KTLRPEDAERTGVDRDLCMRNLE---TLRKNPEIRNKLIELFSEPQVFTESD---D 365
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D ++YN F S D + I+R SP+ L + FE+K+++EL F Y+ARN+ TLSY
Sbjct: 366 VDTQIYNGFFSPSDRSTMDIIRETSPQNLPALELSFEDKRMKELFFRYKARNYPATLSYD 425
Query: 726 ELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGK 778
E +RW ++R F ++ Y + L +E + +E + L AL+ Y +
Sbjct: 426 EQQRWLQHRRDYFSEERLTEYMQQIQLLLVE---HQHDEKRCQQLKALISYAR 475
>gi|229846770|ref|ZP_04466877.1| exonuclease I [Haemophilus influenzae 7P49H1]
gi|229810259|gb|EEP45978.1| exonuclease I [Haemophilus influenzae 7P49H1]
Length = 473
Score = 327 bits (838), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 175/459 (38%), Positives = 258/459 (56%), Gaps = 18/459 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YDYE+FG+N DRP QFA IRTD N I PIM YCK D+LP P A ++T I
Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGKPIMFYCKQTNDYLPAPEAVMVTGI 65
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C G+ E +FA+ I F +P T +GYN I +DDE+TR+ F+RN I+PYE WK
Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI W Y ++G PSF+LE L+ N + H+ AHDA++DV A
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF + R KK + + P +++ M + + + P+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPL 245
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLNRSP 607
HP N+N LI +L D L +++R L KK+ +E +P+ ++H+N+ P
Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSKLEERGVSSVPLKLVHINKCP 305
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
I ++ K L R D N+ + + IF + + S+ N++
Sbjct: 306 I-LAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASN--DNVE 362
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
ELYN F S D +AILRS+ +KLS FE+K++ EL+F YRAR+F +TL+ E
Sbjct: 363 TELYNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQ 422
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLKK-ANEH 765
+WKKYR ++ +E ES L++ A EH
Sbjct: 423 IKWKKYRQNKLEKSA----------VEFESSLQRLAEEH 451
>gi|261821314|ref|YP_003259420.1| exonuclease I [Pectobacterium wasabiae WPP163]
gi|261605327|gb|ACX87813.1| Exodeoxyribonuclease I [Pectobacterium wasabiae WPP163]
Length = 475
Score = 327 bits (838), Expect = 3e-86, Method: Composition-based stats.
Identities = 168/476 (35%), Positives = 269/476 (56%), Gaps = 21/476 (4%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF +DYETFG + RDRP QFA +RTD+ N I P+++YC+P D+LP+P A +IT I
Sbjct: 8 TFFIHDYETFGKHPARDRPAQFAGVRTDMDFNIIGEPLVIYCRPTDDYLPEPEAVMITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L G+ E +FA I + F PGT +GYN I FDDE++R +F+RN +PY W+
Sbjct: 68 TPQIALAKGVNEAEFARQIHEAFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYDPYAYSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
+ SRWDL++ ++A Y L P GI WP ++G PSF+LEHL+ N ++H++AHDA+SDV A
Sbjct: 128 HGNSRWDLLDALRACYALRPEGIVWPENDDGLPSFRLEHLTKANGIAHEQAHDAMSDVYA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L + P+LF ++ LR K + A I P +P +++ MF + S S + P+
Sbjct: 188 TIAMAKLFKQAQPKLFEYLFPLRNKNKLSALIDIPQMKPLVHVSGMFGAARSNTSWIVPL 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L D L D +R+ L ++++ D +P+ ++H+N+ P
Sbjct: 248 AWHPDNRNAVIMCDLAGDMTPLLELDSQALRERLYTRRDALTADQSAVPLKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY----KINNSDLEL 664
V++ L R D N+ S N+ + +K+ + SD
Sbjct: 307 VLAPANTLRPEDAERLGIDRQRCLDNLALLRS---NSDVREKVVELFAEAPAFAASD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
++D LY+ F D + + I++ +P+ L ++ F + +LE L F YRARNF TL
Sbjct: 361 DVDLRLYDGFFGDADRMAMKIIQETAPQNLPALDLTFADNRLEPLFFRYRARNFPGTLDD 420
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI--LNALLMYGK 778
+E +RW ++R + F ++ + + E+ L ++ + K+ L AL Y +
Sbjct: 421 REQQRWLQHRRAVFTPER-----LQNYLSELSELYQRHEDDKEKMTQLKALYAYAQ 471
>gi|329120482|ref|ZP_08249147.1| exodeoxyribonuclease I [Neisseria bacilliformis ATCC BAA-1200]
gi|327461940|gb|EGF08270.1| exodeoxyribonuclease I [Neisseria bacilliformis ATCC BAA-1200]
Length = 521
Score = 327 bits (838), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 178/463 (38%), Positives = 256/463 (55%), Gaps = 18/463 (3%)
Query: 277 KKGLKIEKNKIKLPNNSIKKIGNYYIDILLHNGNSTFLWYDYETFGLNVRRDRPFQFAAI 336
K LK + + +LPN+ + TF YDYETFG++ RDRP QFA I
Sbjct: 28 KSSLKTQSSVFRLPNHHQPQKTM---------PQPTFFIYDYETFGIHPARDRPAQFAGI 78
Query: 337 RTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKITPQFCLNNGIPEYKFASIIEKIFLK 396
RTD N + +PI LYCK D+LP P + LIT ITPQ C G+PE +FA+ I F +
Sbjct: 79 RTDPDFNPVADPITLYCKQTNDYLPSPESVLITSITPQECNQKGVPEPEFAARICAEFSQ 138
Query: 397 PGTISVGYNTILFDDEITRFMFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITW 456
P T +GYN I +DDEITR F+RN ++PYE ++N SRWDL++V++A + L P GI W
Sbjct: 139 PNTCIMGYNNIRYDDEITRHTFYRNFLDPYEYSYQNGNSRWDLLDVVRACHALRPEGIEW 198
Query: 457 PYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKK 516
P NG P F+LE L+ N + H AHDALSDV AT+ LA+LI+ PRLF F R K
Sbjct: 199 PRDENGLPVFRLEQLTAANGIEHAHAHDALSDVYATIALAKLIKQKQPRLFRFFFENRGK 258
Query: 517 KYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLN 576
+ A I P +I+ MF + +L+ P+ HP NKN +I +L D + L
Sbjct: 259 APLAAMIDIRRHTPLVHISGMFGNARRNTALIAPLSWHPSNKNAVIACDLSADLRDLLNL 318
Query: 577 DINKIRDYLCFKKNSFKED----IPISMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAF 632
+ + +R+ L K + +P+ ++H+N+ PI+ VL R D
Sbjct: 319 NADTLRERLYTPKETLLAQGALPVPLKLVHINKCPILTPR-NVLRDEDAERLGIDNTICQ 377
Query: 633 KNIKCASSILNNTYIWKKIFLDYK-INNSDLELNIDEELYNNFISKKDNLKLAILRSMSP 691
N+ + ++IF + + SD N++ ELYN F S D LA LR++ P
Sbjct: 378 NNLAALQNAPEIRQKVQQIFRETRQFAPSD---NVETELYNGFFSPADKQNLATLRTLPP 434
Query: 692 KKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKRWKKYR 734
++L+N F++ ++ +L+F YRAR+F TL+ E +W+KYR
Sbjct: 435 EQLANHGLPFQDPRIPQLLFHYRARHFYPTLTRAEQIQWQKYR 477
>gi|392979841|ref|YP_006478429.1| exonuclease I [Enterobacter cloacae subsp. dissolvens SDM]
gi|392325774|gb|AFM60727.1| exonuclease I [Enterobacter cloacae subsp. dissolvens SDM]
Length = 474
Score = 327 bits (838), Expect = 3e-86, Method: Composition-based stats.
Identities = 174/470 (37%), Positives = 263/470 (55%), Gaps = 14/470 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A ++T I
Sbjct: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDDEFNIIGEPEVFYCKPADDYLPQPGAVMVTGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+ E +FA I +F P T VGYN I FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQEAREKGVNEAEFARRIHDLFTVPHTCVVGYNNIRFDDEVTRNIFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI WP +G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 NRNSRWDLLDIMRACYALRPEGINWPENEDGLPSFRLEHLTRANGIEHSNAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF ++LS R K+ ++ I P +P +I+ MF + S + P+
Sbjct: 189 TIAMAKLVKTAQPRLFEYLLSHRSKQKLMTLIDVPQMKPLVHISGMFGAWRGNTSWVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R+ L K++ + +P+ ++H+N+ P V
Sbjct: 249 AWHPDNRNAVIMVDLAGDISPLLELDSDTLRERLYTPKDALGDLPAVPVKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL-ELNIDE 668
++ L R + N+K + N + +K+ + + N+D
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKV---LRENPQVREKVVAIFAEAEPFMPSENVDA 364
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
+LYN F S D + I+ P+ L ++ F +K++E+L+F YRARN+ TL E +
Sbjct: 365 QLYNGFFSDADRAAMNIVLQTEPRNLPALDITFADKRIEKLMFNYRARNYPGTLDEAEQE 424
Query: 729 RWKKYRISRFYNKKNNLY--NINMFYLEIESLLKKANEHDTKILNALLMY 776
RW ++R + F + + Y + M Y + E NE +L AL Y
Sbjct: 425 RWLQHRRNVFTPEYLHGYAQELEMLYGQYE-----GNEEKQALLKALFKY 469
>gi|421616921|ref|ZP_16057922.1| exonuclease I [Pseudomonas stutzeri KOS6]
gi|409781151|gb|EKN60755.1| exonuclease I [Pseudomonas stutzeri KOS6]
Length = 478
Score = 327 bits (838), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 164/475 (34%), Positives = 266/475 (56%), Gaps = 18/475 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+ WYD+ET G++ RDRP Q A IRT+ L I P+ +YC+P D LP P ACL+T I
Sbjct: 4 SIFWYDFETTGVSPSRDRPLQVAGIRTNEALEEIGEPLNIYCQPGDDILPHPAACLVTGI 63
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
P G+ E +F + + PGT GYN++ FDDE+TR+ +RN +PY REW+
Sbjct: 64 APATLQQKGLCEAEFIHRLHQELAAPGTCVAGYNSLRFDDEVTRYSLYRNFYDPYAREWQ 123
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
SRWDLI++++ Y L P G+ WP + +G+ + KLE LS N L H AHDALSDVRA
Sbjct: 124 GGNSRWDLIDLVRTAYALRPEGLAWP-EEDGRVTLKLERLSVANGLEHLNAHDALSDVRA 182
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LARL+R+ PRL++++ +LR+K+ VL +I + P +++ FS+ ++S++ P+
Sbjct: 183 TIALARLVRDRQPRLYDYLYNLRRKQAVLEQIN--LFEPLVHVSGRFSAARHFLSVVLPL 240
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N LI +L +P +R L + + + +P+ ++H+NR P
Sbjct: 241 AWHPGNRNALIVCDLQAEPDLLWSESAEALRKRLYTRHDQLADGELPVPLKLVHVNRCP- 299
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK----KIFLDYKINNSDLEL 664
V++ LKVL + + R D+ A+ + + + W I+ + SD
Sbjct: 300 VLAPLKVLRAADIQRLGLDMPACHAR---AALLREHRHAWSDKLADIYREEGFRGSD--- 353
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
+ +++LY+ F+ ++D +R+++P +L+ F++ +LE L+F YRARNF TLS
Sbjct: 354 DPEQQLYDGFLGERDRRLCEQIRNLAPAELARHPCRFDDVRLEALLFRYRARNFPATLSG 413
Query: 725 KELKRWKKYRISRFYNKKNNLYN-INMFYLEIESLLKKANEHDTKILNALLMYGK 778
E +W+++ R + N + F EI+ L+ A ++L YG+
Sbjct: 414 PEQLQWREFCQQRLSDPACGAPNTLVQFEAEIQRLMSTAAPEQQRLLQQWREYGQ 468
>gi|378697614|ref|YP_005179572.1| exonuclease I [Haemophilus influenzae 10810]
gi|301170130|emb|CBW29734.1| exonuclease I [Haemophilus influenzae 10810]
Length = 473
Score = 327 bits (837), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 175/459 (38%), Positives = 257/459 (55%), Gaps = 18/459 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YDYE+FG+N DRP QFA IRTD N I PIM YCK D+LP P A ++T I
Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C G+ E +FA+ I F +P T +GYN I +DDE+TR+ F+RN I+PYE WK
Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI W Y ++G PSF+LE L+ N + H+ AHDA+ DV A
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMEDVYA 185
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF + R KK + + P +++ M + + + P+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPL 245
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLNRSP 607
HP N+N LI +L D L +++R L KK+ +E +P+ ++H+N+ P
Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLTKSADELRTDLYTKKSELEERGVSSVPLKLVHINKCP 305
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
I ++ K L R D N+ + + IF + + S+ N++
Sbjct: 306 I-LAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASN--DNVE 362
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
ELYN F S D +AILRS+ +KLS FE+K++ EL+F YRAR+F +TL+ E
Sbjct: 363 TELYNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQ 422
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLKK-ANEH 765
+WKKYR ++ +E ES L++ A EH
Sbjct: 423 IKWKKYRQNKLEKSA----------VEFESSLQRLAEEH 451
>gi|315634266|ref|ZP_07889553.1| exodeoxyribonuclease I [Aggregatibacter segnis ATCC 33393]
gi|315476856|gb|EFU67601.1| exodeoxyribonuclease I [Aggregatibacter segnis ATCC 33393]
Length = 475
Score = 327 bits (837), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 178/482 (36%), Positives = 268/482 (55%), Gaps = 22/482 (4%)
Query: 305 LLHNGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPR 364
++ + +F YDYE+FG+N DRP QF IRTD N I P++LYCK D+LP P
Sbjct: 1 MMAKNDFSFFIYDYESFGVNPATDRPAQFGGIRTDADFNIIGEPVVLYCKQTNDYLPAPE 60
Query: 365 ACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLIN 424
A L+T ITPQ C G+PE FA+ I + F +P T +G+N I +DDE+TR+ F+RN I+
Sbjct: 61 AVLVTGITPQECNEKGLPEPDFAARILQEFSQPNTCVMGFNNIRYDDEMTRYTFYRNFID 120
Query: 425 PYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHD 484
PYE WKN SRWDL+++++A Y L P GI WP ++G PSF LE L+ N + H AHD
Sbjct: 121 PYEYSWKNGNSRWDLLDLVRACYALRPNGIEWPLDDDGMPSFHLEKLTKANGIEHTNAHD 180
Query: 485 ALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSY 544
A+SDV AT+ +A+LI+ P+LF + R KK + I P +++ M +
Sbjct: 181 AMSDVYATIEMAKLIKQKQPKLFQYFFENRGKKEIEKLINTAEMTPLVHVSGMLGNYRGN 240
Query: 545 ISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISM 600
+L+ P+ HP NKN +I +L + L ++R+ L KK + E +P+ +
Sbjct: 241 TTLIAPLAWHPTNKNAVIVCDLTANIDDLLTKSAEELRENLYTKKETLLEAGVLPVPLKL 300
Query: 601 IHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF----LDYK 656
IH+N+ I+ +L N + +N A K +L + + +K+ D +
Sbjct: 301 IHINKCSILAPEKTLLPQNAE---RLGINRALCE-KNQQRLLASKDVRQKVMDIFQQDRE 356
Query: 657 INNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRAR 716
SD N++ ELYN F S D +AILR++ P+KL+ N F++ ++ +L+F YRAR
Sbjct: 357 FEASD---NVETELYNGFFSDADKNNMAILRTLEPEKLAEHNLSFQDPRIPQLLFHYRAR 413
Query: 717 NFIETLSYKELKRWKKYR-------ISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI 769
+F TL+ E +W+KYR + RF L N E +LL+K E+ KI
Sbjct: 414 HFYRTLNRAEQIKWQKYRRKKLEAEVLRFEQSLQELATQNENDEEKLTLLQKVYEYGNKI 473
Query: 770 LN 771
++
Sbjct: 474 ID 475
>gi|145639026|ref|ZP_01794634.1| exodeoxyribonuclease I [Haemophilus influenzae PittII]
gi|145271998|gb|EDK11907.1| exodeoxyribonuclease I [Haemophilus influenzae PittII]
gi|309750985|gb|ADO80969.1| Exodeoxyribonuclease I [Haemophilus influenzae R2866]
Length = 473
Score = 327 bits (837), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 175/459 (38%), Positives = 258/459 (56%), Gaps = 18/459 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YDYE+FG+N DRP QFA IRTD N I PIM YCK D+LP P A ++T I
Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C G+ E +FA+ I F +P T +GYN I +DDE+TR+ F+RN I+PYE WK
Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI W Y ++G PSF+LE L+ N + H+ AHDA++DV A
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF + R KK + + P +++ M + + + P+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGSMTPLVHVSGMLGNYRGNCTWVAPL 245
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLNRSP 607
HP N+N LI +L D L +++R L KK+ +E +P+ ++H+N+ P
Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLTKSADELRTDLYTKKSELEERGVSSVPLKLVHINKCP 305
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
I ++ K L R D N+ + + IF + + S+ N++
Sbjct: 306 I-LAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASN--DNVE 362
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
ELYN F S D +AILRS+ +KLS FE+K++ EL+F YRAR+F +TL+ E
Sbjct: 363 TELYNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQ 422
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLKK-ANEH 765
+WKKYR ++ +E ES L++ A EH
Sbjct: 423 IKWKKYRQNKLEKSA----------VEFESSLQRLAEEH 451
>gi|385871550|gb|AFI90070.1| Exodeoxyribonuclease I [Pectobacterium sp. SCC3193]
Length = 475
Score = 327 bits (837), Expect = 4e-86, Method: Composition-based stats.
Identities = 168/476 (35%), Positives = 269/476 (56%), Gaps = 21/476 (4%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF +DYETFG + RDRP QFA +RTD+ N I P+++YC+P D+LP+P A +IT I
Sbjct: 8 TFFIHDYETFGKHPARDRPAQFAGVRTDMDFNIIGEPLVIYCRPTDDYLPEPEAVMITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L G+ E +FA I + F PGT +GYN I FDDE++R +F+RN +PY W+
Sbjct: 68 TPQIALAKGVNEAEFARQIHEAFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYDPYAYSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
+ SRWDL++ ++A Y L P GI WP ++G PSF+LEHL+ N ++H++AHDA+SDV A
Sbjct: 128 HGNSRWDLLDALRACYALRPEGIVWPENDDGLPSFRLEHLTKANGIAHEQAHDAMSDVYA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L + P+LF ++ LR K + A I P +P +++ MF + S S + P+
Sbjct: 188 TIAMAKLFKQAQPKLFEYLFPLRNKNKLSALIDIPQMKPLVHVSGMFGAARSNTSWIVPL 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L D L D +R+ L ++++ D +P+ ++H+N+ P
Sbjct: 248 AWHPDNRNAVIMCDLAGDMTPLLELDSQALRERLYTRQDALTADQSAVPLKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY----KINNSDLEL 664
V++ L R D N+ S N+ + +K+ + SD
Sbjct: 307 VLAPANTLRPEDAERLGIDRQRCLDNLALLRS---NSDVREKVVELFAEAPAFAASD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
++D LY+ F D + + I++ +P+ L ++ F + +LE L F YRARNF TL
Sbjct: 361 DVDLRLYDGFFGDADRMAMKIIQETAPQNLPALDLTFADNRLEPLFFRYRARNFPGTLDD 420
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI--LNALLMYGK 778
+E +RW ++R + F ++ + + E+ L ++ + K+ L AL Y +
Sbjct: 421 REQQRWLQHRRAVFTPER-----LQNYLSELSELYQRHEDDKEKMTQLKALYAYAQ 471
>gi|365837983|ref|ZP_09379339.1| exodeoxyribonuclease I [Hafnia alvei ATCC 51873]
gi|364560783|gb|EHM38703.1| exodeoxyribonuclease I [Hafnia alvei ATCC 51873]
Length = 474
Score = 327 bits (837), Expect = 4e-86, Method: Composition-based stats.
Identities = 170/475 (35%), Positives = 270/475 (56%), Gaps = 22/475 (4%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL +DYETFG + DRP QFA +RTD N I+ P+++YC+PA D+LP P A +IT I
Sbjct: 7 TFLIHDYETFGQHPALDRPAQFAGVRTDADFNIIEEPLVIYCRPADDYLPQPEAVMITGI 66
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L+ G+ E +F+ I ++F PGT +GYN I FDDE++R +F+RN +PY W+
Sbjct: 67 TPQVALSRGVSEAEFSRQINQMFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYDPYAYSWQ 126
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++ Y L P GI WP G PSFKLEHLS N + H+ AHDA++DV A
Sbjct: 127 NGNSRWDLLDVLRTCYALRPEGINWPENEEGLPSFKLEHLSKANGIEHENAHDAMADVYA 186
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+L++ P+LF+++ LR K V A + +P +I+ MF + SL+ P+
Sbjct: 187 TIALAKLVKQAQPKLFDYLFQLRNKHKVSALLDIANMKPLVHISGMFGALRGNTSLVAPL 246
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN +I +L D L D + +R+ L +++ + D P+ ++H+N+ P+
Sbjct: 247 AWHPENKNAVIMCDLAGDMSPLLDLDTDALRERLYTRRSELRSDQPTAPLKLVHINKCPV 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
+ + + N R D N++ + ++ + K+ + SD
Sbjct: 307 LAPDQTLRPENAE-RLGLDRQRCMDNLQL---LRDHPELRDKVVAVFAEAEPFKASD--- 359
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
++D +LY+ F S D + I+R P+ L ++ F +K++ L+F YRARNF TL+
Sbjct: 360 DVDAQLYDGFFSDADRSAMQIIRETLPQNLPALDLTFSDKRVLPLLFRYRARNFPTTLTD 419
Query: 725 KELKRWKKY--------RISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILN 771
E +RW+ + R+ + ++ LYN + E + LK+ E+ +++N
Sbjct: 420 DEQRRWQLHRQAVLTPERVQAYIHQLEELYNRHEEEPEKLAQLKELFEYARQLVN 474
>gi|206578810|ref|YP_002237569.1| exonuclease I [Klebsiella pneumoniae 342]
gi|206567868|gb|ACI09644.1| exodeoxyribonuclease I [Klebsiella pneumoniae 342]
Length = 474
Score = 327 bits (837), Expect = 4e-86, Method: Composition-based stats.
Identities = 167/431 (38%), Positives = 250/431 (58%), Gaps = 11/431 (2%)
Query: 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKIT 372
FL++DYETFG + DRP QFAAIRTD LN + P + YCKPA D+LP P+A +IT IT
Sbjct: 10 FLFHDYETFGTSPSLDRPAQFAAIRTDAELNVLGEPEVFYCKPADDYLPQPQAVMITGIT 69
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
PQ L G E FA I +F P T VGYN + FDDE+TR +F+RN +PY W++
Sbjct: 70 PQEALAKGDNEAAFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRAT 492
+ SRWDL++V++A Y L P GITWP + G PSF+LEHL+ N + H+ AHDA++DV AT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGITWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVYAT 189
Query: 493 LGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPIC 552
+ +A+L++ PRLF+++ S R K+ + I P +P +++ MF + SL+ P+
Sbjct: 190 IAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAPLA 249
Query: 553 IHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIV- 609
HP N+N +I +L D L D + +R+ L + + PI ++HLN+ P++
Sbjct: 250 WHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDLPAAPIKLVHLNKCPVLA 309
Query: 610 -ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL-ELNID 667
+ L+ L ++ R + +N A + N + +K+ Y + N+D
Sbjct: 310 QANTLRPLDAD---RLGISIQRCLEN---AQLLRANPQVREKVVAVYAEAEPFVPSENVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LYN F S D + I+ P+ L ++ F +K++E L+F YRARNF TL E
Sbjct: 364 AQLYNGFFSDADRAAMKIVLETEPRNLPALDITFADKRIERLLFNYRARNFPGTLDEHEQ 423
Query: 728 KRWKKYRISRF 738
+RW ++R F
Sbjct: 424 QRWLEHRRQVF 434
>gi|238784349|ref|ZP_04628360.1| Exodeoxyribonuclease I [Yersinia bercovieri ATCC 43970]
gi|238714777|gb|EEQ06778.1| Exodeoxyribonuclease I [Yersinia bercovieri ATCC 43970]
Length = 476
Score = 326 bits (836), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 171/477 (35%), Positives = 263/477 (55%), Gaps = 15/477 (3%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
N TF +DYETFG DRP QFA +RTD+ N I+ P+++YC PA D+LP P A +
Sbjct: 5 NKQPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVIYCAPADDYLPQPEAVM 64
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
IT ITPQ L NG+ E +FA I + F PGT +GYN I FDDE++R +F+RN +PY
Sbjct: 65 ITGITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYA 124
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
W+ SRWDL++V++A Y L P GI WP +G PSFKLEHL+ N + H AHDA+S
Sbjct: 125 YSWQGGNSRWDLLDVMRACYALRPEGIIWPENEDGLPSFKLEHLTRANGVEHLHAHDAMS 184
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ +A+L++ PRLF+++ R K + A I P +++ MF + S
Sbjct: 185 DVHATIAMAKLVKQVQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSW 244
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
+ P+ HP NKN +I +L D L D + +R+ L +++ +P+ ++H+N
Sbjct: 245 VAPLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDRLSAQDAAVPLKLVHIN 304
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF-LDYKINNSDLE 663
+ P++ +L N R D +N++ + N + +K+ L + +
Sbjct: 305 KCPVLAPAKTLLPENAE-RLGIDRQHCLRNLQL---LRQNPQVREKVVALFAEAEPFAVS 360
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
++D +LYN F S D + I+ P+ L ++ F++ +LE L+F +RARN+ TL+
Sbjct: 361 DDVDAQLYNGFFSDADRATMKIILQTEPQNLPALDLTFQDPRLEPLLFRFRARNYPNTLT 420
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK--ILNALLMYGK 778
Y E KRW ++R N + + L++E + + K +L AL Y K
Sbjct: 421 YSEQKRWLEHRREAL-----NPELVQDYVLQLEQFYNQYEDDKEKLALLKALFDYAK 472
>gi|417707954|ref|ZP_12356990.1| exodeoxyribonuclease I [Shigella flexneri VA-6]
gi|420331815|ref|ZP_14833473.1| exodeoxyribonuclease I [Shigella flexneri K-1770]
gi|333002524|gb|EGK22085.1| exodeoxyribonuclease I [Shigella flexneri VA-6]
gi|391251611|gb|EIQ10823.1| exodeoxyribonuclease I [Shigella flexneri K-1770]
Length = 474
Score = 326 bits (836), Expect = 5e-86, Method: Composition-based stats.
Identities = 167/433 (38%), Positives = 251/433 (57%), Gaps = 13/433 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT I
Sbjct: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPRPGAVLITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P+
Sbjct: 189 TIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLAHVSGMFGAWRGNTSWVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N +I +L D L DI+ +R+ L K ++ +P+ ++H+N+ P V
Sbjct: 249 AWHPENRNAVIMADLAGDISPLLELDIDTLRERLYTAKADLGDNAAVPVKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLELN 665
++ L R + N+K + N + +K+ + SD N
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD---N 361
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 VDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYA 421
Query: 726 ELKRWKKYRISRF 738
E +RW+++R F
Sbjct: 422 EQQRWQEHRHQVF 434
>gi|309787899|ref|ZP_07682509.1| exodeoxyribonuclease I [Shigella dysenteriae 1617]
gi|308924298|gb|EFP69795.1| exodeoxyribonuclease I [Shigella dysenteriae 1617]
Length = 475
Score = 326 bits (836), Expect = 5e-86, Method: Composition-based stats.
Identities = 168/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNLIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYTLRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMNPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF ETL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPETLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|429096851|ref|ZP_19158957.1| Exodeoxyribonuclease I [Cronobacter dublinensis 582]
gi|426283191|emb|CCJ85070.1| Exodeoxyribonuclease I [Cronobacter dublinensis 582]
Length = 475
Score = 326 bits (836), Expect = 6e-86, Method: Composition-based stats.
Identities = 175/472 (37%), Positives = 264/472 (55%), Gaps = 14/472 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAA+RTD N I P + YCKPA D+LP P A LIT I
Sbjct: 9 TFLFHDYETFGKSPSLDRPAQFAALRTDENFNVIGEPEVFYCKPADDYLPQPEAVLITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L G E +FA I +F P T VGYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQVALARGENEAEFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 HDNSRWDLLDVMRACYALRPEGIVWPENSDGLPSFRLEHLTVANGIEHANAHDAMADVHA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PR+F+++ + R K+ + I +P +++ MF + S + PI
Sbjct: 189 TIAMAQLVKTRQPRMFDYLYTYRSKQKLATLIDIVQMKPLVHVSGMFGAWRGNTSWIAPI 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R+ L K + +D +P+ ++HLN+ P V
Sbjct: 249 AWHPDNRNAVIVVDLAGDISPLLELDADALRERLYTPKAALGDDSAVPVKLVHLNKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF-LDYKINNSDLELNIDE 668
++ L R D N+K + + + +K+ L + N+D
Sbjct: 308 LAQANTLRPEDAERLGIDRQHCLNNLKV---LRDAPQVREKLVALFAEAQPFPPTSNVDA 364
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
+LY+ F S D + I+ P+ L ++ F +K++E+L+F YRARNF TLS E +
Sbjct: 365 QLYDGFFSDADRAAMRIVLQTPPQNLPALDITFVDKRIEKLLFNYRARNFPGTLSEPEQQ 424
Query: 729 RWKKYRISRFYNKKNNLY--NINMFYLEIESLLKKANEHDTKILNALLMYGK 778
RW +R F + Y + M Y + ES ++ T +L AL Y +
Sbjct: 425 RWLNHRRDVFTPEFLQAYAQELEMLYNQYES-----DKEKTALLKALYQYAQ 471
>gi|432607896|ref|ZP_19844082.1| exodeoxyribonuclease I [Escherichia coli KTE67]
gi|431138414|gb|ELE40249.1| exodeoxyribonuclease I [Escherichia coli KTE67]
Length = 475
Score = 326 bits (836), Expect = 6e-86, Method: Composition-based stats.
Identities = 168/434 (38%), Positives = 251/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPRPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L DI+ +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDIDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|387130341|ref|YP_006293231.1| Exodeoxyribonuclease I [Methylophaga sp. JAM7]
gi|386271630|gb|AFJ02544.1| Exodeoxyribonuclease I [Methylophaga sp. JAM7]
Length = 481
Score = 326 bits (836), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 170/474 (35%), Positives = 262/474 (55%), Gaps = 10/474 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
T W+DYET G + R DRP QFA IRTD LN I P+M+YCKP+ DFLP P+A LIT
Sbjct: 2 ETLYWHDYETSGTDPRFDRPMQFAGIRTDTDLNVIGEPLMIYCKPSDDFLPHPQASLITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
+TPQ G+ E F I + +PGT VGYN++ FDDE TRF +RN + Y REW
Sbjct: 62 LTPQKAAELGVNEAAFIERIHQELSQPGTCGVGYNSLRFDDEFTRFTLFRNFHDAYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+N SRWD+I++++ L P GI WP GKPSF+LE L+ N + H AHDAL+DV
Sbjct: 122 QNGNSRWDIIDMVRLTRALRPEGINWPDNEQGKPSFRLEALTAANQIEHTGAHDALADVY 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+ I+ P+L++F+ R+K V + W +P +++ M+ +++ +++ P
Sbjct: 182 ATIEIAKKIKFAQPKLYHFVFQHRRKHQVAPLLNWQDQKPVIHVSRMYPAEYCSTAMVVP 241
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDIP---ISMIHLNRSP 607
+ P NKN +I ++L +DP+ + D + +R+ L + D P + IHLN+ P
Sbjct: 242 LAPDPTNKNAIIVYDLRYDPEHVIQLDADTLRERLFTSTHELSADQPRPALKTIHLNKCP 301
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINN-SDLELNI 666
IV+ +K L R + DL N++ + N +IF + +D E ++
Sbjct: 302 IVVP-VKTLDDAAAQRLQIDLKVHQANLQKLQATPNLRAKLSQIFTPPEFAPVTDPEASL 360
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
F S +D +A +R +P +L + FE+ +L EL+F YRARN+ +TL+ +E
Sbjct: 361 ---YSGGFFSDRDKQHMATIRQSTPAQLQGLTLPFEDVRLAELLFRYRARNWPDTLTSEE 417
Query: 727 LKRWKKYRISRF-YNKKNNLYNINMFYLEIESLLKKANE-HDTKILNALLMYGK 778
+ W YR R ++ + N F I ++ + +IL+AL Y +
Sbjct: 418 QEVWLTYRQQRLAHHTHPAILNFERFDEAIAVCRQQIDAIEQHQILDALADYAE 471
>gi|419845085|ref|ZP_14368372.1| exodeoxyribonuclease I [Haemophilus parainfluenzae HK2019]
gi|386417011|gb|EIJ31503.1| exodeoxyribonuclease I [Haemophilus parainfluenzae HK2019]
Length = 473
Score = 326 bits (836), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 170/430 (39%), Positives = 246/430 (57%), Gaps = 9/430 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
N +F YDYE+FG+N DRP QFA IRTD N I P+MLYCK D+LP P A ++T
Sbjct: 4 NFSFFIYDYESFGINPASDRPAQFAGIRTDADFNIIGEPVMLYCKQTNDYLPAPEAVMVT 63
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ C GIPE +FA+ I F +P T +GYN I +DDE+TR+ F+RN I+PYE
Sbjct: 64 GITPQECNEKGIPEPEFAAKILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYS 123
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
WKN SRWDL+++++A Y L P GI W Y ++G PSF+LE L+ N + H+ AHDA++DV
Sbjct: 124 WKNGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADV 183
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+LI+ P+LF F R KK + I +++ M + +
Sbjct: 184 YATIAMAKLIKEKQPKLFQFFFVHRGKKEIEKLIDTAEMTALVHVSGMLGNYRGNCVWVA 243
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLNR 605
P+ HP N+N +I +L D + +R L KK+ +E +P+ ++H+N+
Sbjct: 244 PLAWHPTNQNAVIVCDLSGDIDNLISKSAVDLRQDLYTKKSELEERGVSSVPLKLVHINK 303
Query: 606 SPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK-INNSDLEL 664
PI+ +L N R D N+ L+ +IF + + SD
Sbjct: 304 CPILAPAKTLLPENAA-RLGIDRQHCLDNLAKLRQSLDIREKVIEIFSEEREFEPSD--- 359
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N++ ELYN F S D +AILR + P+KL+ FE+K++ EL+F YRAR+F +TL+
Sbjct: 360 NVETELYNGFFSNADKNNMAILRDLPPEKLAEHGLAFEDKRIPELLFHYRARHFYKTLNR 419
Query: 725 KELKRWKKYR 734
E +W+KYR
Sbjct: 420 AEQIKWQKYR 429
>gi|416079244|ref|ZP_11586170.1| exodeoxyribonuclease I [Aggregatibacter actinomycetemcomitans
serotype b str. SCC1398]
gi|444337543|ref|ZP_21151497.1| exodeoxyribonuclease I [Aggregatibacter actinomycetemcomitans
serotype b str. SCC4092]
gi|348003208|gb|EGY43859.1| exodeoxyribonuclease I [Aggregatibacter actinomycetemcomitans
serotype b str. SCC1398]
gi|443546776|gb|ELT56382.1| exodeoxyribonuclease I [Aggregatibacter actinomycetemcomitans
serotype b str. SCC4092]
Length = 474
Score = 326 bits (836), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 169/426 (39%), Positives = 244/426 (57%), Gaps = 7/426 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YDYE+FG+N DRP QF IRTD N I PI+LYCK D+LP P A L+T I
Sbjct: 7 SFFIYDYESFGVNPATDRPAQFGGIRTDEDFNIIGEPIVLYCKQTNDYLPAPEAVLVTGI 66
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C G+ E +FA+ I + F +P T +G+N I +DDE+TR+ F+RN I+PYE WK
Sbjct: 67 TPQECNEKGLSEPEFAAKILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWK 126
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI WP + G PSF+LE L+ N ++H AHDA+SDV A
Sbjct: 127 NGNSRWDLLDLVRACYALRPDGIEWPLDDEGMPSFRLEKLTEANGIAHDSAHDAMSDVYA 186
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF + R KK V I P +++ M + +L+ P+
Sbjct: 187 TIEMAKLIKRKQPKLFQYFFENRGKKEVEKLIDTAEMMPLVHVSGMLGNYRGNTTLIAPL 246
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLNRSP 607
HP NKN +I +L D L + ++R+ L KK + +P+ +IH+N+ P
Sbjct: 247 AWHPTNKNAVIVCDLTADIDDLLTKSVGELRENLYTKKETLLAAGALPVPLKLIHINKCP 306
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
IV +L N R D +N + + IF ++ D N++
Sbjct: 307 IVAPAKTLLPQNAE-RLGIDQELCAQNRQRLQEAKDIRQKVMDIF--HQEREFDASDNVE 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
ELYN F S D +AILRS+ P+KL+ N F++ ++ EL+F YRAR+F TL+ E
Sbjct: 364 TELYNGFFSDADKNNMAILRSLEPEKLAKHNLSFQDPRIPELLFHYRARHFYRTLNRAEQ 423
Query: 728 KRWKKY 733
+W+KY
Sbjct: 424 IKWQKY 429
>gi|317491333|ref|ZP_07949769.1| exonuclease [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316920880|gb|EFV42203.1| exonuclease [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 474
Score = 326 bits (836), Expect = 6e-86, Method: Composition-based stats.
Identities = 171/475 (36%), Positives = 269/475 (56%), Gaps = 22/475 (4%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL +DYETFG + DRP QFA +RTD N I+ P+++YC+P+ D+LP P A +IT I
Sbjct: 7 TFLIHDYETFGQHPALDRPAQFAGVRTDADFNIIEEPLVIYCRPSDDYLPQPEAVMITGI 66
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L G+ E +F+ I +IF PGT +GYN I FDDE++R +F+RN +PY W+
Sbjct: 67 TPQVALTRGVSEAEFSRQINQIFSVPGTCIMGYNNIRFDDEVSRNIFYRNFYDPYAYSWQ 126
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++ Y L P GI WP G PSFKLEHLS N + H+ AHDA++DV A
Sbjct: 127 NGNSRWDLLDVLRTCYALRPEGINWPENEEGLPSFKLEHLSKANGIEHENAHDAMADVYA 186
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+L++ P+LF+++ LR K V A + +P +I+ MF + SL+ P+
Sbjct: 187 TIALAKLVKQAQPKLFDYLFQLRNKHKVSALLDIANMKPLVHISGMFGALRGNTSLVAPL 246
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN +I +L D L D + +R+ L +++ + D P+ ++H+N+ P+
Sbjct: 247 AWHPDNKNAVIMCDLAGDMSPLLELDTDALRERLYTRRSELRSDQPPAPLKLVHINKCPV 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
+ + + N R D N++ + N+ + K+ + SD
Sbjct: 307 LAPDQTLRPENAE-RLGLDRQRCMDNLQL---LRNHPELRDKVVAVFAEAEPFKASD--- 359
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
++D +LY+ F S D + I+R P+ L ++ F +K++ L+F YRARNF TL+
Sbjct: 360 DVDAQLYDGFFSDADRSAMQIIRETLPQNLPALDLTFNDKRVLPLLFRYRARNFPTTLTD 419
Query: 725 KELKRWKKY--------RISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILN 771
E +RW+ + R+ + ++ LYN + E + LK+ E+ +++N
Sbjct: 420 DEQRRWQLHRQAVLTPERLQAYIHQLEELYNRHEDEPEKLAQLKELFEYARQLVN 474
>gi|319897029|ref|YP_004135224.1| exonuclease I [Haemophilus influenzae F3031]
gi|317432533|emb|CBY80893.1| exonuclease I [Haemophilus influenzae F3031]
Length = 473
Score = 326 bits (835), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 175/461 (37%), Positives = 257/461 (55%), Gaps = 18/461 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
N +F YDYE+FG+N DRP QFA IRTD N I PIM YCK D+LP P A ++T
Sbjct: 4 NFSFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGKPIMFYCKQTNDYLPAPEAVMVT 63
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ C G+ E +FA+ I F +P T +GYN I +DDE+TR+ F+RN I+PYE
Sbjct: 64 GITPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYS 123
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
WKN SRWDL+++++A Y L P GI W Y + G PSF+LE L+ N + H+ AHDA++DV
Sbjct: 124 WKNGNSRWDLLDLVRACYALRPEGINWAYDDAGMPSFRLEKLTKANGIEHENAHDAMADV 183
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ + +LI+ P+LF + R KK + + P +++ M + + +
Sbjct: 184 YATIAMGKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVA 243
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLNR 605
P+ HP N+N LI +L D L +++R L KK+ +E +P+ ++H+N+
Sbjct: 244 PLAWHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSELEERGVSSVPLKLVHINK 303
Query: 606 SPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELN 665
PI ++ K L R D N+ + + IF + + S+ N
Sbjct: 304 CPI-LAPAKTLLPETADRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASN--DN 360
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
++ ELYN F S D +AILRS+ +KLS FE+K++ EL+F YRAR+F +TL+
Sbjct: 361 VETELYNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRA 420
Query: 726 ELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKK-ANEH 765
E +WKKYR ++ +E ES L++ A EH
Sbjct: 421 EQIKWKKYRQNKLEKSA----------VEFESSLQRLAEEH 451
>gi|238749982|ref|ZP_04611486.1| Exodeoxyribonuclease I [Yersinia rohdei ATCC 43380]
gi|238711911|gb|EEQ04125.1| Exodeoxyribonuclease I [Yersinia rohdei ATCC 43380]
Length = 476
Score = 326 bits (835), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 170/477 (35%), Positives = 266/477 (55%), Gaps = 15/477 (3%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
N TF +DYETFG DRP QFA +RTD+ N I+ P+++YC PA D+LP P A +
Sbjct: 5 NKQPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVIYCTPADDYLPQPEAVM 64
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
IT ITPQ L NG+ E +FA I + F PGT +GYN I FDDE++R +F+RN +PY
Sbjct: 65 ITGITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYA 124
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
W+ SRWDL++V++A Y L P GI WP +G PSFKLEHL+ N + H +AHDA+S
Sbjct: 125 YSWQGGNSRWDLLDVMRACYALRPAGIVWPENEDGLPSFKLEHLTKANGVEHLQAHDAMS 184
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ +A+L++ PRLF+++ R K + A I P +++ MF + S
Sbjct: 185 DVHATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIANMTPLVHVSGMFGAARGNTSW 244
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKK---NSFKEDIPISMIHLN 604
+ P+ HP NKN +I +L D L D + +R+ L ++ N+ + +P+ ++H+N
Sbjct: 245 VAPLAWHPDNKNAVIMCDLAGDMSPLLELDSDALRERLYTRRDKLNAQEAAVPLKLVHIN 304
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF-LDYKINNSDLE 663
+ P++ +L+ N R D +N++ + N I +K+ L + +
Sbjct: 305 KCPVLAPAKTLLAENAE-RLGIDRQRCLENLQL---LRQNPQIREKVVALFAEAEPFAVS 360
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
++D +LYN F S D + I+ P+ L ++ F++ +LE L+F +RARN+ TL+
Sbjct: 361 DDVDAQLYNGFFSDADRATMKIILQTEPQNLPALDLTFQDPRLEPLLFRFRARNYPNTLT 420
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK--ILNALLMYGK 778
E +RW ++R N + + L++E + + K +L AL Y +
Sbjct: 421 DSEQQRWLEHRREAL-----NPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAR 472
>gi|148826847|ref|YP_001291600.1| exonuclease I [Haemophilus influenzae PittGG]
gi|148718089|gb|ABQ99216.1| exodeoxyribonuclease I [Haemophilus influenzae PittGG]
Length = 473
Score = 326 bits (835), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 174/459 (37%), Positives = 258/459 (56%), Gaps = 18/459 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YDYE+FG+N DRP QFA IRTD N I PIM YCK D+LP P A ++T I
Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C G+ E +F++ I F +P T +GYN I +DDE+TR+ F+RN I+PYE WK
Sbjct: 66 TPQECNEKGLSEPEFSANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI W Y ++G PSF+LE L+ N + H+ AHDA++DV A
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF + R KK + + P +++ M + + + P+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGTMTPLVHVSGMLGNYRGNCTWVAPL 245
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLNRSP 607
HP N+N LI +L D L +++R L KK+ +E +P+ ++H+N+ P
Sbjct: 246 SWHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSELEERGVSSVPLKLVHINKCP 305
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
I ++ K L R D N+ + + IF + + S+ N++
Sbjct: 306 I-LAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASN--DNVE 362
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
ELYN F S D +AILRS+ +KLS FE+K++ EL+F YRAR+F +TL+ E
Sbjct: 363 TELYNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQ 422
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLKK-ANEH 765
+WKKYR ++ +E ES L++ A EH
Sbjct: 423 IKWKKYRQNKLEKSA----------VEFESSLQRLAEEH 451
>gi|89074290|ref|ZP_01160780.1| putative exonuclease I [Photobacterium sp. SKA34]
gi|89049994|gb|EAR55528.1| putative exonuclease I [Photobacterium sp. SKA34]
Length = 473
Score = 326 bits (835), Expect = 8e-86, Method: Composition-based stats.
Identities = 175/472 (37%), Positives = 261/472 (55%), Gaps = 16/472 (3%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
+T W DYETFG + DRP QFA +RTD+ +N I P+++YCKP D+LP P ACLIT
Sbjct: 7 ATLYWIDYETFGASPANDRPCQFAGVRTDMDMNIIGEPLVIYCKPPADYLPSPEACLITG 66
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ + G+ E +F I KP T +GYN + FDDE+TR+ +RN +PY W
Sbjct: 67 ITPQEAMEKGLSEPEFIEAIHAELSKPNTCVIGYNNVRFDDEVTRYTLYRNFFDPYGWAW 126
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+N SRWDL+++++ Y L P GI WP + +PSFKLE LS N + H AHDA++DV
Sbjct: 127 QNGNSRWDLLDIMRTCYALRPEGINWPLDDEDRPSFKLEKLSVANGIEHANAHDAMADVY 186
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LA++I+ N P+LF+++ LR K+ + I P +I+ MF + S + P
Sbjct: 187 ATIELAKIIKTNQPKLFDYLFDLRHKRKLQELIDIVNLTPLVHISGMFGTDCGNTSWIVP 246
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP NKN +IT NL DP + + +++R+ L K+ D +P+ +HLN+ P
Sbjct: 247 MAWHPDNKNTVITVNLALDPTPLIELNADQLRNRLYTKRVDLAPDELPVPVKEVHLNKCP 306
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKN---IKCASSILNNTYIWKKIFLDYKINNSDLEL 664
V++ K L + R D KN IK I + +Y N+
Sbjct: 307 -VLAPAKTLKAEDAARLGIDREQCLKNLALIKQHPEIREKLIEMVSVKREYAAND----- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D LY+ F S D + I+R +P +L+++ ++K+++ L+F YRARNF TLSY
Sbjct: 361 NVDAMLYDGFFSTADRSTMDIIRETTPDQLASLEINVDDKRIKPLLFRYRARNFPMTLSY 420
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMY 776
+E RW K+ F+ Y N E + +++E K+L +L Y
Sbjct: 421 EEQVRW-KHHCQDFFEMNMTKYMEN---FEAVAYEHESDESKMKVLQSLYDY 468
>gi|419210164|ref|ZP_13753246.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC8C]
gi|419877142|ref|ZP_14398778.1| exonuclease I [Escherichia coli O111:H11 str. CVM9534]
gi|419882016|ref|ZP_14403292.1| exonuclease I [Escherichia coli O111:H11 str. CVM9545]
gi|420105348|ref|ZP_14615873.1| exonuclease I [Escherichia coli O111:H11 str. CVM9455]
gi|420111128|ref|ZP_14620994.1| exonuclease I [Escherichia coli O111:H11 str. CVM9553]
gi|424761744|ref|ZP_18189288.1| exonuclease I [Escherichia coli O111:H11 str. CFSAN001630]
gi|378054218|gb|EHW16499.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC8C]
gi|388341020|gb|EIL07165.1| exonuclease I [Escherichia coli O111:H11 str. CVM9534]
gi|388363230|gb|EIL27168.1| exonuclease I [Escherichia coli O111:H11 str. CVM9545]
gi|394398599|gb|EJE74761.1| exonuclease I [Escherichia coli O111:H11 str. CVM9455]
gi|394399342|gb|EJE75389.1| exonuclease I [Escherichia coli O111:H11 str. CVM9553]
gi|421942352|gb|EKT99695.1| exonuclease I [Escherichia coli O111:H11 str. CFSAN001630]
Length = 474
Score = 325 bits (834), Expect = 8e-86, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 307 VLAQANTLRPEDAARLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 361 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 420
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 421 AEQQRWLEHRRQVF 434
>gi|334124739|ref|ZP_08498737.1| exodeoxyribonuclease I [Enterobacter hormaechei ATCC 49162]
gi|333388110|gb|EGK59295.1| exodeoxyribonuclease I [Enterobacter hormaechei ATCC 49162]
Length = 478
Score = 325 bits (834), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 173/475 (36%), Positives = 264/475 (55%), Gaps = 14/475 (2%)
Query: 309 GNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLI 368
TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A ++
Sbjct: 10 ARPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNIIGEPEVFYCKPADDYLPQPGAVMV 69
Query: 369 TKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYER 428
T ITPQ + G+ E +FA I +F P T VGYN I FDDE+TR +F+RN +PY
Sbjct: 70 TGITPQEARDKGVSEAEFARRIHDLFTVPNTCVVGYNNIRFDDEVTRNIFYRNFYDPYAW 129
Query: 429 EWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSD 488
W+N SRWDL+++++A Y L P GI WP +G PSF+LEHL+ N + H AHDA++D
Sbjct: 130 SWQNRNSRWDLLDIMRACYALRPEGIHWPENEDGLPSFRLEHLTRANGIEHSNAHDAMAD 189
Query: 489 VRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLM 548
V AT+ +A+L++ PRLF ++LS R K+ ++ I P +P +I+ MF + S +
Sbjct: 190 VYATIAMAKLVKTAQPRLFEYLLSHRSKQKLMTLIDVPQMKPLVHISGMFGAWRGNTSWV 249
Query: 549 WPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRS 606
P+ HP N+N +I +L D L D + +R+ L K + + +P+ ++H+N+
Sbjct: 250 APLAWHPDNRNAVIMVDLAGDISPLLELDSDTLRERLYTPKEALGDLPAVPVKLVHINKC 309
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL-ELN 665
P V++ L R + N+K + +N + +K+ + + N
Sbjct: 310 P-VLAQANTLRPEDADRLGINRQHCLDNLKV---LRDNPQVREKVVAIFAEAEPFVPSEN 365
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARN+ TL
Sbjct: 366 VDAQLYNGFFSDADRAAMNIVLQTDPRNLPALDITFADKRIEKLMFNYRARNYPGTLDEA 425
Query: 726 ELKRWKKYRISRFYNKKNNLY--NINMFYLEIESLLKKANEHDTKILNALLMYGK 778
E +RW ++R + F + + Y + M Y + E N +L AL Y +
Sbjct: 426 EQERWLQHRRNVFTPEFLSSYAQELEMLYGQYE-----GNAEKQALLKALYQYAQ 475
>gi|309797270|ref|ZP_07691665.1| exonuclease [Escherichia coli MS 145-7]
gi|308119145|gb|EFO56407.1| exonuclease [Escherichia coli MS 145-7]
Length = 475
Score = 325 bits (834), Expect = 9e-86, Method: Composition-based stats.
Identities = 168/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ IP+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAIPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|170717586|ref|YP_001784670.1| exonuclease I [Haemophilus somnus 2336]
gi|168825715|gb|ACA31086.1| Exodeoxyribonuclease I [Haemophilus somnus 2336]
Length = 476
Score = 325 bits (834), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 171/430 (39%), Positives = 250/430 (58%), Gaps = 13/430 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YDYE+FG+N DRP QFA IRTD N I P+M YCK D+LP P + L+T I
Sbjct: 6 SFFIYDYESFGINPATDRPAQFAGIRTDQDFNIIGEPVMFYCKQTDDYLPSPESVLVTGI 65
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C GIPE +FA I F P T +GYN + +DDE+TR+ F+RN I+PYE WK
Sbjct: 66 TPQICNEKGIPEPEFAEKILAEFSHPNTCIMGYNNVRYDDEMTRYTFYRNFIDPYEYSWK 125
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDLI+V++A Y L P GI W Y ++G PSF+LE L+ VN + H AHDA++DV A
Sbjct: 126 NGNSRWDLIDVVRACYALRPDGINWAYDDDGMPSFRLEKLTQVNGIEHGNAHDAMADVYA 185
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF F R K+ V I +P +++ M + S + P+
Sbjct: 186 TIAMAKLIKQKQPKLFQFFFENRGKREVEKLIDIANMKPLVHVSGMLGNYRGNTSWVVPL 245
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED----IPISMIHLNRSP 607
HP+N+N +I +L D L ++R L K ++ +P+ ++H+N+ P
Sbjct: 246 AWHPINQNAVIVCDLAKDIDDLLAKSAVELRQNLYTPKVELEQHNILPVPLKLVHINKCP 305
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIK--CASSILNNTYIWKKIFLDYK-INNSDLEL 664
I+ +L N + D +N++ S + + I +IF D + + +SD
Sbjct: 306 ILAPAKTLLPENAT-KLGIDREFCLQNLQKLRQSPDIRDKVI--EIFHDEREVIHSD--- 359
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N++ ELYN F S D + ILR +SP+KL+ N F +K++ +L+F YRAR+F +TL
Sbjct: 360 NVETELYNQFFSNNDKNNMTILRQLSPEKLNEHNLSFSDKRIPDLLFHYRARHFYKTLDR 419
Query: 725 KELKRWKKYR 734
E +W+KYR
Sbjct: 420 SEQIKWQKYR 429
>gi|410636524|ref|ZP_11347118.1| exodeoxyribonuclease I [Glaciecola lipolytica E3]
gi|410144136|dbj|GAC14323.1| exodeoxyribonuclease I [Glaciecola lipolytica E3]
Length = 480
Score = 325 bits (834), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 174/436 (39%), Positives = 263/436 (60%), Gaps = 9/436 (2%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
N + + LW+DYET+G+N ++D P QFA IRTD+ LN I+ P+ Y + D+LP+P A L
Sbjct: 4 NKHQSILWHDYETWGVNPQKDFPCQFAGIRTDLDLNIIEKPVKWYSQIPNDYLPNPYAAL 63
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
+T ITPQ L +G+ E +F I + KPGT S GYN+I FDDE+TR +RNL +PY
Sbjct: 64 VTGITPQLTLRDGLVEAEFIKKILEQMAKPGTCSAGYNSIRFDDEVTRNTLYRNLHDPYA 123
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
REW+N SRWD+I++++A Y L P GI W YK++G PSFKLE L+ N +SH AHDALS
Sbjct: 124 REWQNGNSRWDIIDLVRACYALRPEGINWVYKDDGTPSFKLEDLTQANQISHADAHDALS 183
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ +A+L++ P+L+++I +LR K+ V +I P +I+ + + +
Sbjct: 184 DVYATIAIAKLVKQTQPKLYDYIFNLRTKRNVAEQINLESQIPLVHISSKLPAINGCCTW 243
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED----IPISMIHL 603
+ PI HP+NKN +I NL DP+ DI +I+ L ++ NS E+ +PI ++HL
Sbjct: 244 ILPIAYHPINKNAVICLNLALDPQPLFDLDIEQIKTRL-YQPNSELEEGQQRLPIKLLHL 302
Query: 604 NRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLE 663
N+ PIV + K L+ R D N +N+ S + + K I L + S+
Sbjct: 303 NKCPIV-APAKTLTEENAQRLGIDRNQCLQNLALLKSQV--SLADKLISLYSQERKSEDS 359
Query: 664 LNIDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
++ D LY+ F+S D KL + M P L + ++ F + +L L+F YRARN+ +L
Sbjct: 360 IDPDYALYSGGFLSDSDRSKLTQIHQMDPTNLGSKDWGFSDPRLNTLLFRYRARNYPLSL 419
Query: 723 SYKELKRWKKYRISRF 738
S +E+ +W+++R R
Sbjct: 420 SEEEVIKWQRHRQYRL 435
>gi|419922306|ref|ZP_14440327.1| exonuclease I [Escherichia coli 541-15]
gi|388396674|gb|EIL57755.1| exonuclease I [Escherichia coli 541-15]
Length = 475
Score = 325 bits (834), Expect = 9e-86, Method: Composition-based stats.
Identities = 168/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L +N F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALNITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|254491492|ref|ZP_05104671.1| Exonuclease C-terminal domain family [Methylophaga thiooxidans
DMS010]
gi|224462970|gb|EEF79240.1| Exonuclease C-terminal domain family [Methylophaga thiooxydans
DMS010]
Length = 479
Score = 325 bits (834), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 165/474 (34%), Positives = 262/474 (55%), Gaps = 10/474 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
+T W+DYET G++ R DRP QFA +RTD LN I P+M+YCKP+ D+LP P+A L+T
Sbjct: 2 TTLYWHDYETSGIDPRFDRPMQFAGVRTDEDLNIIGEPLMIYCKPSGDYLPHPQAALVTG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
+TPQ G+ E +F I PGT VGYN++ FDDE TRF +RN + Y REW
Sbjct: 62 LTPQLAEKEGLNEAEFIKQIHDELAAPGTCGVGYNSLRFDDEFTRFTLFRNFYDAYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
++ SRWD+I++++ L P GI WP + +GKPSF+LE L+ N + H AHDAL+DV
Sbjct: 122 QSGNSRWDIIDMVRLTRALRPEGIHWPNREDGKPSFRLEDLTAANGIEHSGAHDALADVY 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +ARLI+N P+L++++ R+K+ + + +P +++ M+ ++ +L+ P
Sbjct: 182 ATIEMARLIKNAQPKLYDYVFERRRKQTLAPLLNLNERKPVVHVSRMYPGEYCGTALVVP 241
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLNRSP 607
+ P N N +I ++L HDPK + D +R+ L E + +H+N+ P
Sbjct: 242 LAKDPNNNNGIIVYDLRHDPKDLIELDAETLRERLFTPTADLPEGATRPALKTLHINKCP 301
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
+V+ L R + D ++++ ++ T IF + D + D
Sbjct: 302 VVVPE-NTLDDAAAERLQIDRTAHYQHLDMLNTAQGLTEKLNAIFTAPTYDEID---DPD 357
Query: 668 EELY-NNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
LY F S D K+ ++R+ P L ++ FE+ +L EL+F YRARN+ E+L+ +E
Sbjct: 358 ASLYGGGFFSDNDKRKMDVIRNADPAMLPTLSVPFEDPRLPELLFRYRARNWPESLNQEE 417
Query: 727 LKRWKKYRISRFYNK-KNNLYNINMFYLEI-ESLLKKANEHDTKILNALLMYGK 778
++W YR R N+ + + N+ F + ES + NE +L L Y +
Sbjct: 418 QEQWVLYRQHRLGNQAADKVLNVERFETALAESRQQDLNEEQKAVLEQLEQYAQ 471
>gi|419164806|ref|ZP_13709263.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC6E]
gi|378010888|gb|EHV73833.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC6E]
Length = 474
Score = 325 bits (834), Expect = 9e-86, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 251/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 68 ITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D +++R+ L K ++ +P+ ++H+N+ P
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDRLRERLYTAKTDLGDNAAVPVKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 361 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 420
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 421 AEQQRWLEHRRQVF 434
>gi|419159670|ref|ZP_13704177.1| exodeoxyribonuclease I [Escherichia coli DEC6D]
gi|378007815|gb|EHV70779.1| exodeoxyribonuclease I [Escherichia coli DEC6D]
Length = 475
Score = 325 bits (834), Expect = 9e-86, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 251/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D +++R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDRLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|68250106|ref|YP_249218.1| exonuclease I [Haemophilus influenzae 86-028NP]
gi|148825915|ref|YP_001290668.1| exonuclease I [Haemophilus influenzae PittEE]
gi|68058305|gb|AAX88558.1| exodeoxyribonuclease I [Haemophilus influenzae 86-028NP]
gi|148716075|gb|ABQ98285.1| exodeoxyribonuclease I [Haemophilus influenzae PittEE]
Length = 473
Score = 325 bits (834), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 167/427 (39%), Positives = 246/427 (57%), Gaps = 7/427 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YDYE+FG+N DRP QFA IRTD N I PIM YCK D+LP P A ++T I
Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGKPIMFYCKQTNDYLPAPEAVMVTGI 65
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C G+ E +FA+ I F +P T +GYN I +DDE+TR+ F+RN I+PYE WK
Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI W Y ++G PSF+LE L+ N + H+ AHDA++DV A
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF + R KK + + P +++ M + + + P+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPL 245
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLNRSP 607
HP N+N LI +L D L +++R L KK+ +E +P+ ++H+N+ P
Sbjct: 246 SWHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSELEERGVSSVPLKLVHINKCP 305
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
I ++ K L R D N+ + + IF + + S+ N++
Sbjct: 306 I-LAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASN--DNVE 362
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
ELYN F S D +AILRS+ +KLS FE+K++ EL+F YRAR+F +TL+ E
Sbjct: 363 TELYNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQ 422
Query: 728 KRWKKYR 734
+W+KYR
Sbjct: 423 IKWQKYR 429
>gi|332288227|ref|YP_004419079.1| exonuclease I [Gallibacterium anatis UMN179]
gi|330431123|gb|AEC16182.1| exonuclease I [Gallibacterium anatis UMN179]
Length = 471
Score = 325 bits (834), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 172/426 (40%), Positives = 249/426 (58%), Gaps = 8/426 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YDYE+FG++ RDRP QFA IRTD N I PI+LYCK D+LP P A +T I
Sbjct: 5 SFFIYDYESFGVDPARDRPAQFAGIRTDKDFNIIGEPIVLYCKQTNDYLPHPAAVALTGI 64
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C GI E +FA+ I + F +P T +GYN I FDDE+TR+ F+RN I+PY +
Sbjct: 65 TPQLCNQQGISEPEFAAKILEEFSQPNTCIMGYNNIRFDDEMTRYTFYRNFIDPYAYSYS 124
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
SRWDL++VI+A Y L P GI W Y + G PSF+LE L+ NN+ H AHDA+SDV A
Sbjct: 125 QGNSRWDLLDVIRATYALRPEGINWVYDDEGMPSFRLELLTKANNIEHSHAHDAMSDVYA 184
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF++ + R KK + I + P +++ M + S IS M P+
Sbjct: 185 TIEMAKLIKQQQPKLFDYFFTHRSKKEIEELIDYVNMTPLVHVSGMLGNYRSNISWMVPL 244
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSF----KEDIPISMIHLNRSP 607
HP NKN +I +L D L + +++ L KK K+ +P+ ++H N+ P
Sbjct: 245 APHPTNKNAVIFCDLAADIDDLLTLSVEELKQNLYTKKAELELQGKKSVPLKLVHCNKCP 304
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
I ++ K L R D N+ ++ +IFL+ N+ D +++
Sbjct: 305 I-LAPAKTLRPQDAERVGIDRQQCLTNLAKLQAMPEIREKVHQIFLEEYDNDYD---DVE 360
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY F S D LAILR++SP++L+N F++K++ EL+F YRAR+F +TLS E
Sbjct: 361 TALYKVFFSYSDKNNLAILRTLSPEQLANHGLTFQDKRIPELLFRYRARHFYKTLSRAEQ 420
Query: 728 KRWKKY 733
+W+KY
Sbjct: 421 IKWQKY 426
>gi|422833928|ref|ZP_16881992.1| exodeoxyribonuclease I [Escherichia coli E101]
gi|371603355|gb|EHN92010.1| exodeoxyribonuclease I [Escherichia coli E101]
Length = 475
Score = 325 bits (834), Expect = 9e-86, Method: Composition-based stats.
Identities = 168/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ IP+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAIPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|432531436|ref|ZP_19768464.1| exodeoxyribonuclease I [Escherichia coli KTE233]
gi|431054122|gb|ELD63704.1| exodeoxyribonuclease I [Escherichia coli KTE233]
Length = 475
Score = 325 bits (834), Expect = 1e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 251/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P ++YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVVYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|386265826|ref|YP_005829318.1| Exodeoxyribonuclease I [Haemophilus influenzae R2846]
gi|309973062|gb|ADO96263.1| Exodeoxyribonuclease I [Haemophilus influenzae R2846]
Length = 473
Score = 325 bits (834), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 170/429 (39%), Positives = 249/429 (58%), Gaps = 11/429 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YDYE+FG+N DRP QFA IRTD N I PIM YCK D+LP P A ++T I
Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGKPIMFYCKQTNDYLPAPEAVMVTGI 65
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C G+ E +FA+ I F +P T +GYN I +DDE+TR+ F+RN I+PYE WK
Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI W Y ++G PSF+LE L+ N + H+ AHDA++DV A
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYV--LAEIGWPIARPFFYITHMFSSKHSYISLMW 549
T+ +A+LI+ P+LF + R KK + L +IG P +++ M + + +
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDIG--AMTPLVHVSGMLGNYRGNCTWVA 243
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLNR 605
P+ HP N+N LI +L D L +++R L KK+ +E +P+ ++H+N+
Sbjct: 244 PLSWHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSELEERGVSSVPLKLVHINK 303
Query: 606 SPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELN 665
PI ++ K L R D N+ + + IF + + S+ N
Sbjct: 304 CPI-LAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASN--DN 360
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
++ ELYN F S D +AILRS+ +KLS FE+K++ EL+F YRAR+F +TL+
Sbjct: 361 VETELYNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRA 420
Query: 726 ELKRWKKYR 734
E +W+KYR
Sbjct: 421 EQIKWQKYR 429
>gi|300956271|ref|ZP_07168577.1| exonuclease [Escherichia coli MS 175-1]
gi|300316894|gb|EFJ66678.1| exonuclease [Escherichia coli MS 175-1]
Length = 491
Score = 325 bits (834), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 178/486 (36%), Positives = 277/486 (56%), Gaps = 22/486 (4%)
Query: 303 DILLHNG--NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFL 360
++++++G STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+L
Sbjct: 15 NLMMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYL 74
Query: 361 PDPRACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWR 420
P P A LIT ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+R
Sbjct: 75 PQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYR 134
Query: 421 NLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHK 480
N +PY W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H
Sbjct: 135 NFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHS 194
Query: 481 KAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSS 540
AHDA++DV AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF +
Sbjct: 195 NAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGA 254
Query: 541 KHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPI 598
S + P+ HP N+N +I +L D L D + +R+ L K ++ +P+
Sbjct: 255 WRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPV 314
Query: 599 SMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDY 655
++H+N+ P V++ L R + N+K + N + +K IF++
Sbjct: 315 KLVHINKCP-VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFVEA 370
Query: 656 K-INNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYR 714
+ SD N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YR
Sbjct: 371 EPFTPSD---NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYR 427
Query: 715 ARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI--LNA 772
ARNF TL Y E +RW ++R F + + + EI+ L ++ + K+ L A
Sbjct: 428 ARNFPGTLDYAEQQRWLEHRRQVFTPEF-----LQGYAEEIQMLAQQYADDKEKVALLKA 482
Query: 773 LLMYGK 778
L Y +
Sbjct: 483 LWQYAE 488
>gi|304397387|ref|ZP_07379265.1| Exodeoxyribonuclease I [Pantoea sp. aB]
gi|304355005|gb|EFM19374.1| Exodeoxyribonuclease I [Pantoea sp. aB]
Length = 475
Score = 325 bits (834), Expect = 1e-85, Method: Composition-based stats.
Identities = 171/472 (36%), Positives = 259/472 (54%), Gaps = 14/472 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + RDRP QFA +RTD N + P + YC+P D+LP P A +IT I
Sbjct: 9 TFLFHDYETFGTSPSRDRPAQFAGLRTDSEFNPVGEPDVFYCRPPDDYLPQPEAVMITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ ++ G+ E +FA I +F T VGYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQIAMSRGMIEAEFAERIHTLFTTEQTCVVGYNNVRFDDEVTRNIFYRNFYDPYGWAWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++A Y L P GI WP G PSF+LEHL+ N ++H+ AHDA+SDV A
Sbjct: 129 NGNSRWDLLDVMRACYALRPDGIIWPENEEGFPSFRLEHLTKANGVAHENAHDAMSDVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
TL +A+L++ P+LF F+ + R K ++ I P +P +++ MF + S + P+
Sbjct: 189 TLAMAKLVKEKQPKLFEFLFTHRNKNKLMNLIDIPQMKPLVHVSGMFGAARGNTSWIVPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIV 609
HP N+N LI +L D L D + +R+ L KN + +P+ ++H+N+ P V
Sbjct: 249 AWHPDNRNALIVVDLAGDMSPLLQLDADTLRERLYTPKNDLGDLPPVPVKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK-INNSDLELNIDE 668
++ L R D N+ + +F + + SD ++D
Sbjct: 308 LAPASTLRPEDAARLGIDRQHCLANLALLRQQPDVREKLVTLFAEAEPFTPSD---DVDT 364
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
+LY+ F S D + I+R +P L ++ FE+ ++ +L+F YRARNF TL E +
Sbjct: 365 QLYDGFFSDADRAGMNIIRQTAPANLPALDLSFESARVAKLLFRYRARNFPGTLDDAEQQ 424
Query: 729 RWKKYRISRFYNKKNNLYNINMFYLEIESL--LKKANEHDTKILNALLMYGK 778
RW ++R N + F E+E L L +A+ L AL +Y +
Sbjct: 425 RWLQHRREVL-----NAERVQAFMQELEGLANLHEADAEKVGQLKALYLYAQ 471
>gi|162419714|ref|YP_001607449.1| exonuclease I [Yersinia pestis Angola]
gi|166009382|ref|ZP_02230280.1| exodeoxyribonuclease I [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166211647|ref|ZP_02237682.1| exodeoxyribonuclease I [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167424322|ref|ZP_02316075.1| exodeoxyribonuclease I [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|270486761|ref|ZP_06203835.1| exonuclease C-terminal domain protein [Yersinia pestis KIM D27]
gi|294503532|ref|YP_003567594.1| exodeoxyribonuclease I [Yersinia pestis Z176003]
gi|384121979|ref|YP_005504599.1| exodeoxyribonuclease I [Yersinia pestis D106004]
gi|384126021|ref|YP_005508635.1| exodeoxyribonuclease I [Yersinia pestis D182038]
gi|162352529|gb|ABX86477.1| exodeoxyribonuclease I [Yersinia pestis Angola]
gi|165991937|gb|EDR44238.1| exodeoxyribonuclease I [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166207418|gb|EDR51898.1| exodeoxyribonuclease I [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167057171|gb|EDR66934.1| exodeoxyribonuclease I [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|262361575|gb|ACY58296.1| exodeoxyribonuclease I [Yersinia pestis D106004]
gi|262365685|gb|ACY62242.1| exodeoxyribonuclease I [Yersinia pestis D182038]
gi|270335265|gb|EFA46042.1| exonuclease C-terminal domain protein [Yersinia pestis KIM D27]
gi|294353991|gb|ADE64332.1| exodeoxyribonuclease I [Yersinia pestis Z176003]
Length = 487
Score = 325 bits (834), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 168/477 (35%), Positives = 267/477 (55%), Gaps = 15/477 (3%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
N TF +DYETFG DRP QFA +RTD+ N ++ P+++YCKPA D+LP P A +
Sbjct: 16 NKQPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVM 75
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
IT ITPQ L NG+ E +F+ I + F PGT +GYN I FDDE++R +F+RN +PY
Sbjct: 76 ITGITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYA 135
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
W+ SRWDL++V++A Y L P GI WP ++G PSFKLEHL+ N + H +AHDA+S
Sbjct: 136 YSWQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMS 195
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ +A+L++ PRLF+++ R K + A I P +++ MF + S
Sbjct: 196 DVYATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSW 255
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
+ P+ HP NKN +I +L D L D + +R+ L +++ + IPI ++H+N
Sbjct: 256 VAPLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHIN 315
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF-LDYKINNSDLE 663
+ P++ +L N R D +N++ + N + +K+ L + +
Sbjct: 316 KCPVLAPAKTLLPEN-ADRLGIDRQRCLQNLQL---LRQNPQVREKVVALFAQAEPFAVT 371
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
++D +LYN F S D + I++ + L ++ F++ +LE L+F +RARN+ TL+
Sbjct: 372 DDVDTQLYNGFFSDADRATIKIIQQTESQNLPALDLTFQDPRLEALLFRFRARNYPNTLN 431
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK--ILNALLMYGK 778
E +RW ++R ++ + + L++E + + K +L AL Y K
Sbjct: 432 DSEQQRWLQHRREALSPER-----VQDYVLQLEQFYNQYEDDKEKLALLKALFEYAK 483
>gi|422766587|ref|ZP_16820314.1| exonuclease [Escherichia coli E1520]
gi|323936909|gb|EGB33192.1| exonuclease [Escherichia coli E1520]
Length = 474
Score = 325 bits (834), Expect = 1e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFAHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 361 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 420
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 421 AEQQRWLEHRRQVF 434
>gi|300824755|ref|ZP_07104860.1| exonuclease [Escherichia coli MS 119-7]
gi|300522742|gb|EFK43811.1| exonuclease [Escherichia coli MS 119-7]
Length = 499
Score = 325 bits (834), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 170/444 (38%), Positives = 259/444 (58%), Gaps = 15/444 (3%)
Query: 303 DILLHNG--NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFL 360
++++++G STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+L
Sbjct: 23 NLMMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYL 82
Query: 361 PDPRACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWR 420
P P A LIT ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+R
Sbjct: 83 PQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYR 142
Query: 421 NLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHK 480
N +PY W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H
Sbjct: 143 NFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHS 202
Query: 481 KAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSS 540
AHDA++DV AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF +
Sbjct: 203 NAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGA 262
Query: 541 KHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPI 598
S + P+ HP N+N +I +L D L D + +R+ L K ++ +P+
Sbjct: 263 WRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPV 322
Query: 599 SMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDY 655
++H+N+ P V++ L R + N+K + N + +K IF +
Sbjct: 323 KLVHINKCP-VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEA 378
Query: 656 K-INNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYR 714
+ SD N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YR
Sbjct: 379 EPFTPSD---NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYR 435
Query: 715 ARNFIETLSYKELKRWKKYRISRF 738
ARNF TL Y E +RW ++R F
Sbjct: 436 ARNFPGTLDYAEQQRWLEHRRQVF 459
>gi|443618073|ref|YP_007381929.1| exonuclease I [Escherichia coli APEC O78]
gi|443422581|gb|AGC87485.1| exonuclease I [Escherichia coli APEC O78]
Length = 474
Score = 325 bits (833), Expect = 1e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 361 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 420
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 421 AEQQRWLEHRRQVF 434
>gi|427805130|ref|ZP_18972197.1| exonuclease I, 3'--> 5' specific; deoxyribophosphodiesterase
[Escherichia coli chi7122]
gi|427809688|ref|ZP_18976753.1| exonuclease I, 3'--> 5' specific; deoxyribophosphodiesterase
[Escherichia coli]
gi|412963312|emb|CCK47234.1| exonuclease I, 3'--> 5' specific; deoxyribophosphodiesterase
[Escherichia coli chi7122]
gi|412969867|emb|CCJ44508.1| exonuclease I, 3'--> 5' specific; deoxyribophosphodiesterase
[Escherichia coli]
Length = 475
Score = 325 bits (833), Expect = 1e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|419863692|ref|ZP_14386198.1| exonuclease I [Escherichia coli O103:H25 str. CVM9340]
gi|422761227|ref|ZP_16814986.1| exonuclease [Escherichia coli E1167]
gi|324119041|gb|EGC12930.1| exonuclease [Escherichia coli E1167]
gi|388341587|gb|EIL07682.1| exonuclease I [Escherichia coli O103:H25 str. CVM9340]
Length = 474
Score = 325 bits (833), Expect = 1e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 361 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 420
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 421 AEQQRWLEHRRQVF 434
>gi|191167705|ref|ZP_03029513.1| exodeoxyribonuclease I [Escherichia coli B7A]
gi|209919475|ref|YP_002293559.1| exonuclease I [Escherichia coli SE11]
gi|416345632|ref|ZP_11679114.1| Exodeoxyribonuclease I [Escherichia coli EC4100B]
gi|417155076|ref|ZP_11993205.1| exodeoxyribonuclease I [Escherichia coli 96.0497]
gi|417159576|ref|ZP_11996604.1| exodeoxyribonuclease I [Escherichia coli 99.0741]
gi|417581529|ref|ZP_12232331.1| exodeoxyribonuclease I [Escherichia coli STEC_B2F1]
gi|417667439|ref|ZP_12316984.1| exodeoxyribonuclease I [Escherichia coli STEC_O31]
gi|432675121|ref|ZP_19910584.1| exodeoxyribonuclease I [Escherichia coli KTE142]
gi|432750454|ref|ZP_19985061.1| exodeoxyribonuclease I [Escherichia coli KTE29]
gi|190902218|gb|EDV61959.1| exodeoxyribonuclease I [Escherichia coli B7A]
gi|209912734|dbj|BAG77808.1| exonuclease I [Escherichia coli SE11]
gi|320198703|gb|EFW73303.1| Exodeoxyribonuclease I [Escherichia coli EC4100B]
gi|345337300|gb|EGW69732.1| exodeoxyribonuclease I [Escherichia coli STEC_B2F1]
gi|386168165|gb|EIH34681.1| exodeoxyribonuclease I [Escherichia coli 96.0497]
gi|386175027|gb|EIH47019.1| exodeoxyribonuclease I [Escherichia coli 99.0741]
gi|397784585|gb|EJK95438.1| exodeoxyribonuclease I [Escherichia coli STEC_O31]
gi|431214516|gb|ELF12274.1| exodeoxyribonuclease I [Escherichia coli KTE142]
gi|431297371|gb|ELF87029.1| exodeoxyribonuclease I [Escherichia coli KTE29]
Length = 475
Score = 325 bits (833), Expect = 1e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|432489656|ref|ZP_19731531.1| exodeoxyribonuclease I [Escherichia coli KTE213]
gi|432839664|ref|ZP_20073151.1| exodeoxyribonuclease I [Escherichia coli KTE140]
gi|433203597|ref|ZP_20387374.1| exodeoxyribonuclease I [Escherichia coli KTE95]
gi|431020632|gb|ELD33973.1| exodeoxyribonuclease I [Escherichia coli KTE213]
gi|431389816|gb|ELG73527.1| exodeoxyribonuclease I [Escherichia coli KTE140]
gi|431721659|gb|ELJ85652.1| exodeoxyribonuclease I [Escherichia coli KTE95]
Length = 475
Score = 325 bits (833), Expect = 1e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|422790726|ref|ZP_16843430.1| exonuclease [Escherichia coli TA007]
gi|323972839|gb|EGB68038.1| exonuclease [Escherichia coli TA007]
Length = 474
Score = 325 bits (833), Expect = 1e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 361 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 420
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 421 AEQQRWLEHRRQVF 434
>gi|170019660|ref|YP_001724614.1| exonuclease I [Escherichia coli ATCC 8739]
gi|194436340|ref|ZP_03068442.1| exodeoxyribonuclease I [Escherichia coli 101-1]
gi|432627626|ref|ZP_19863604.1| exodeoxyribonuclease I [Escherichia coli KTE77]
gi|432835004|ref|ZP_20068543.1| exodeoxyribonuclease I [Escherichia coli KTE136]
gi|169754588|gb|ACA77287.1| Exodeoxyribonuclease I [Escherichia coli ATCC 8739]
gi|194425068|gb|EDX41053.1| exodeoxyribonuclease I [Escherichia coli 101-1]
gi|431163455|gb|ELE63876.1| exodeoxyribonuclease I [Escherichia coli KTE77]
gi|431385364|gb|ELG69351.1| exodeoxyribonuclease I [Escherichia coli KTE136]
Length = 475
Score = 325 bits (833), Expect = 1e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|417608586|ref|ZP_12259092.1| exodeoxyribonuclease I [Escherichia coli STEC_DG131-3]
gi|345359176|gb|EGW91355.1| exodeoxyribonuclease I [Escherichia coli STEC_DG131-3]
Length = 475
Score = 325 bits (833), Expect = 1e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|21959485|gb|AAM86164.1|AE013862_9 exonuclease I [Yersinia pestis KIM10+]
Length = 497
Score = 325 bits (833), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 168/477 (35%), Positives = 267/477 (55%), Gaps = 15/477 (3%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
N TF +DYETFG DRP QFA +RTD+ N ++ P+++YCKPA D+LP P A +
Sbjct: 26 NKQPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVM 85
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
IT ITPQ L NG+ E +F+ I + F PGT +GYN I FDDE++R +F+RN +PY
Sbjct: 86 ITGITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYA 145
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
W+ SRWDL++V++A Y L P GI WP ++G PSFKLEHL+ N + H +AHDA+S
Sbjct: 146 YSWQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMS 205
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ +A+L++ PRLF+++ R K + A I P +++ MF + S
Sbjct: 206 DVYATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSW 265
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
+ P+ HP NKN +I +L D L D + +R+ L +++ + IPI ++H+N
Sbjct: 266 VAPLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHIN 325
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF-LDYKINNSDLE 663
+ P++ +L N R D +N++ + N + +K+ L + +
Sbjct: 326 KCPVLAPAKTLLPEN-ADRLGIDRQRCLQNLQL---LRQNPQVREKVVALFAQAEPFAVT 381
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
++D +LYN F S D + I++ + L ++ F++ +LE L+F +RARN+ TL+
Sbjct: 382 DDVDTQLYNGFFSDADRATIKIIQQTESQNLPALDLTFQDPRLEALLFRFRARNYPNTLN 441
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK--ILNALLMYGK 778
E +RW ++R ++ + + L++E + + K +L AL Y K
Sbjct: 442 DSEQQRWLQHRREALSPER-----VQDYVLQLEQFYNQYEDDKEKLALLKALFEYAK 493
>gi|448243069|ref|YP_007407122.1| exonuclease I [Serratia marcescens WW4]
gi|445213433|gb|AGE19103.1| exonuclease I [Serratia marcescens WW4]
Length = 475
Score = 325 bits (833), Expect = 1e-85, Method: Composition-based stats.
Identities = 167/479 (34%), Positives = 268/479 (55%), Gaps = 21/479 (4%)
Query: 309 GNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLI 368
+TF +DYETFG + DRP QFA +RTD+ N I+ P+++YC PA D+LP+P A +I
Sbjct: 5 ATATFYIHDYETFGKSPSLDRPAQFAGVRTDMDFNIIEEPLVIYCAPADDYLPEPEAVMI 64
Query: 369 TKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYER 428
T ITPQ G+ E +F I + F GT +GYN I FDDE++R +F+RN +PY
Sbjct: 65 TGITPQVARAKGVNEAEFTRQIHQAFSVAGTCILGYNNIRFDDEVSRNIFYRNFYDPYAY 124
Query: 429 EWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSD 488
W+N SRWDL++V++A Y L P GI WP +G PSF+LEHL+ N + H +AHDA+SD
Sbjct: 125 SWQNGNSRWDLLDVMRACYALRPDGIVWPENEDGFPSFRLEHLTHANGVEHTQAHDAMSD 184
Query: 489 VRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLM 548
V AT+ +A+L++ PRLF+F+L R K + A I P +++ MF + S +
Sbjct: 185 VYATIAMAKLVKQAQPRLFDFLLQHRNKHKLNALIDVAEMTPLVHVSGMFGAARGNTSWV 244
Query: 549 WPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNR 605
P+ HP NKN +I +L D L ++R+ L +++ D +PI ++H+N+
Sbjct: 245 SPLAWHPDNKNAVIMCDLAGDMTPLLTLSAEQLRERLYTRRDDLAPDQTPVPIKLVHINK 304
Query: 606 SPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSD 661
P++ +L N R D +N++ + + + +K+ + S+
Sbjct: 305 CPVLAPAKTLLPENAE-RLGIDRQACLQNLQL---LKQHPEVREKVVALFAEAEPFKGSE 360
Query: 662 LELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
++D LY+ F S D + I++ P+ L ++ F + +++EL+F +RARN+ T
Sbjct: 361 ---DVDARLYDGFFSDADKAAMRIIQQTKPQNLPALDLAFSDGRMKELLFRFRARNYPNT 417
Query: 722 LSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESL--LKKANEHDTKILNALLMYGK 778
L E +RW ++R ++ + + L++ESL L + ++ T +L AL YGK
Sbjct: 418 LDDAEQRRWLQHRQETLSAER-----VQSYLLQLESLYNLHEGDKEKTALLKALFDYGK 471
>gi|432719131|ref|ZP_19954100.1| exodeoxyribonuclease I [Escherichia coli KTE9]
gi|431262943|gb|ELF54932.1| exodeoxyribonuclease I [Escherichia coli KTE9]
Length = 475
Score = 325 bits (833), Expect = 1e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|406596489|ref|YP_006747619.1| exodeoxyribonuclease I [Alteromonas macleodii ATCC 27126]
gi|407683441|ref|YP_006798615.1| exodeoxyribonuclease I [Alteromonas macleodii str. 'English Channel
673']
gi|406373810|gb|AFS37065.1| exodeoxyribonuclease I [Alteromonas macleodii ATCC 27126]
gi|407245052|gb|AFT74238.1| exodeoxyribonuclease I [Alteromonas macleodii str. 'English Channel
673']
Length = 476
Score = 325 bits (833), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 174/474 (36%), Positives = 270/474 (56%), Gaps = 11/474 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFLW+D+ETFG + ++D P QFAA+RTD+ LN I PI + A D+LP P ACL+T I
Sbjct: 5 TFLWHDFETFGTSPQKDLPCQFAAVRTDMDLNVIGKPINIMSAIANDYLPHPEACLVTGI 64
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + +G E FA+ I + P T SVG+N+I FDDE++R++F+RN +PY REW+
Sbjct: 65 TPQQTIRDGSNEADFAARIYQEMSTPNTCSVGFNSIRFDDEVSRYLFYRNFYDPYSREWR 124
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD+I++ +A Y L P GI WP + +G PSFKLE L+ NN+ H+ AHDALSDV A
Sbjct: 125 NGNSRWDIIDLARACYALRPDGINWPRREDGAPSFKLEALTAANNIGHENAHDALSDVYA 184
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+LI+ PRLF++ LSLR K+ V+ +I +I+ + + + P+
Sbjct: 185 TIALAKLIKEKQPRLFDYALSLRSKQTVMQQIDLTKPSVLLHISSKLPASQGCCTWVMPV 244
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDIP---ISMIHLNRSPI 608
HP N N I +L HD + + +IR L ++F + + + +IH+NRSP
Sbjct: 245 AKHPTNNNAFIAIDLSHDIDSLVNDTPEEIRQALYAPSDTFDDALERPGLKLIHVNRSPF 304
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
I+ K ++ + R D N K +S+ + KI Y + EL+ID
Sbjct: 305 -ITTAKAMTEDNAARLGLDRERCLDNYKVLASMPE---LATKIVDVYDDDIQSGELDIDH 360
Query: 669 ELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY+ F++ +D + P L+ ++ +++ L + +F YRARN+ TL+ E+
Sbjct: 361 ALYSGGFLNDEDRRWCERVIEAQPDDLATLSEKTQHEGLRKQLFRYRARNYPNTLTADEM 420
Query: 728 KRWKKYRISRFYNKK-NNLYNINMFYLEIESLLKKANEHDTK--ILNALLMYGK 778
RW+ +R +R + + + + + +ESL + +++ K IL AL Y +
Sbjct: 421 TRWQHHRQARLTDSAFHGSITLENYMMRLESLAHEHSDNPEKQAILRALYQYAE 474
>gi|354723919|ref|ZP_09038134.1| exonuclease I [Enterobacter mori LMG 25706]
Length = 474
Score = 325 bits (833), Expect = 1e-85, Method: Composition-based stats.
Identities = 173/472 (36%), Positives = 262/472 (55%), Gaps = 14/472 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAAIRTD N I P + YC+PA D+LP P A ++T I
Sbjct: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDDEFNIIGEPEVFYCRPADDYLPQPGAVMVTGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+ E +FA I +F P T VGYN I FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQEAREKGVSEAEFARRIHDLFTVPHTCVVGYNNIRFDDEVTRNIFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI WP +G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 NRNSRWDLLDIMRACYALRPEGINWPENEDGLPSFRLEHLTRANGIEHSNAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF ++LS R K+ + I P +P +I+ MF + S + P+
Sbjct: 189 TIAMAKLVKTAQPRLFEYLLSHRSKQKLTTLIDVPQMKPLVHISGMFGAWRGNTSWVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R+ L KN + +P+ ++H+N+ P V
Sbjct: 249 AWHPDNRNAVIMVDLAGDISPLLELDSDTLRERLYTPKNELGDLPAVPVKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL-ELNIDE 668
++ L R + N+K + +N + +K+ + + N+D
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKV---LRDNPQVREKVVAIFAEAEPFVPSENVDA 364
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
+LYN F S D + I+ P+ L ++ F +K++E+L+F YRARN+ TL E +
Sbjct: 365 QLYNGFFSDADRAAMNIVLQTEPRNLPALDITFADKRIEKLMFNYRARNYPGTLDEVEQE 424
Query: 729 RWKKYRISRFYNKKNNLY--NINMFYLEIESLLKKANEHDTKILNALLMYGK 778
RW ++R + F + N Y + M Y + E N +L +L Y +
Sbjct: 425 RWLQHRRNVFTPEFLNSYAQELEMLYGQYE-----GNAEKQALLKSLFQYAQ 471
>gi|345870462|ref|ZP_08822414.1| Exodeoxyribonuclease I [Thiorhodococcus drewsii AZ1]
gi|343921665|gb|EGV32378.1| Exodeoxyribonuclease I [Thiorhodococcus drewsii AZ1]
Length = 491
Score = 325 bits (833), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 168/433 (38%), Positives = 262/433 (60%), Gaps = 9/433 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F W+DYET+G + +RDR QFA +RTD L + P++LYC+PA D LP P AC +T I
Sbjct: 16 SFYWHDYETWGADPQRDRACQFAGVRTDFDLVEVGEPLVLYCRPAADILPHPDACFVTGI 75
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+ E +FA+ I + +PGT VGYN++ FDDE+TR +F+RNL +PY REW+
Sbjct: 76 TPQDAEREGLCEAEFAAAIHSVLSEPGTCGVGYNSMRFDDEVTRNLFYRNLYDPYAREWQ 135
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDLI+V++ + L P GI WP +G SFKLE L+ N + H AHDAL+DVRA
Sbjct: 136 NGNSRWDLIDVLRLAHALRPDGIDWPLHEDGSVSFKLEQLTEANGIPHVGAHDALADVRA 195
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+G+ARL+R P+LF++ L+LR K+ V +G +P + + + + I+ ++P+
Sbjct: 196 TIGMARLLRRVQPKLFDYGLTLRDKRRVREMLG--KRQPLLHASARYPAALGCIAPVFPL 253
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
P N N +I ++L DP++ L + IR L E +P+ IH+NRSP+
Sbjct: 254 ASRPGNANGVIAFDLRADPRQLLDLSEDAIRRRLFTPVAELPEGVDRVPLKTIHVNRSPM 313
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
++ +K LSS+ R+ D + + + + + T I K+ ++ + + D
Sbjct: 314 -LAPMKTLSSDAAERWGIDPHLVAERSRFL--VEHATEIQAKVEAVHRPPEASDMRDPDL 370
Query: 669 ELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+Y+ F+S +D L LR+++P +L+ + FE+ +L E++F YRARN+ ETLS +E
Sbjct: 371 MIYSGGFLSDRDRRSLDRLRALTPSELAEESPRFEDGRLREMLFRYRARNWPETLSPEET 430
Query: 728 KRWKKYRISRFYN 740
+ W YR++R +
Sbjct: 431 EDWDAYRLARLTD 443
>gi|300898614|ref|ZP_07116941.1| exonuclease [Escherichia coli MS 198-1]
gi|418957628|ref|ZP_13509551.1| exonuclease [Escherichia coli J53]
gi|300357710|gb|EFJ73580.1| exonuclease [Escherichia coli MS 198-1]
gi|384379237|gb|EIE37105.1| exonuclease [Escherichia coli J53]
Length = 499
Score = 325 bits (833), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 177/486 (36%), Positives = 277/486 (56%), Gaps = 22/486 (4%)
Query: 303 DILLHNG--NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFL 360
++++++G STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+L
Sbjct: 23 NLMMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYL 82
Query: 361 PDPRACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWR 420
P P A LIT ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+R
Sbjct: 83 PQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYR 142
Query: 421 NLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHK 480
N +PY W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H
Sbjct: 143 NFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHS 202
Query: 481 KAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSS 540
AHDA++DV AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF +
Sbjct: 203 NAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGA 262
Query: 541 KHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPI 598
S + P+ HP N+N +I +L D L D + +R+ L K ++ +P+
Sbjct: 263 WRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPV 322
Query: 599 SMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDY 655
++H+N+ P V++ L R + N+K + N + +K IF +
Sbjct: 323 KLVHINKCP-VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEA 378
Query: 656 K-INNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYR 714
+ SD N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YR
Sbjct: 379 EPFTPSD---NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYR 435
Query: 715 ARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI--LNA 772
ARNF TL Y E +RW ++R F + + + E++ L+++ + K+ L A
Sbjct: 436 ARNFPGTLDYAEQQRWLEHRRQVFTPEF-----LQGYADELQMLVQQYADDKEKVALLKA 490
Query: 773 LLMYGK 778
L Y +
Sbjct: 491 LWQYAE 496
>gi|432793214|ref|ZP_20027299.1| exodeoxyribonuclease I [Escherichia coli KTE78]
gi|432799171|ref|ZP_20033194.1| exodeoxyribonuclease I [Escherichia coli KTE79]
gi|431339958|gb|ELG27012.1| exodeoxyribonuclease I [Escherichia coli KTE78]
gi|431344038|gb|ELG30994.1| exodeoxyribonuclease I [Escherichia coli KTE79]
Length = 475
Score = 325 bits (833), Expect = 1e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|417132167|ref|ZP_11976952.1| exodeoxyribonuclease I [Escherichia coli 5.0588]
gi|386150021|gb|EIH01310.1| exodeoxyribonuclease I [Escherichia coli 5.0588]
Length = 475
Score = 325 bits (833), Expect = 1e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEAWAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|422774111|ref|ZP_16827767.1| exonuclease [Escherichia coli H120]
gi|323948385|gb|EGB44370.1| exonuclease [Escherichia coli H120]
Length = 474
Score = 325 bits (833), Expect = 1e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDALRERLYTAKADLGDNAAVPVKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 361 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 420
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 421 AEQQRWLEHRRQVF 434
>gi|188495966|ref|ZP_03003236.1| exodeoxyribonuclease I [Escherichia coli 53638]
gi|432377186|ref|ZP_19620177.1| exodeoxyribonuclease I [Escherichia coli KTE12]
gi|432576291|ref|ZP_19812752.1| exodeoxyribonuclease I [Escherichia coli KTE56]
gi|433135269|ref|ZP_20320619.1| exodeoxyribonuclease I [Escherichia coli KTE166]
gi|188491165|gb|EDU66268.1| exodeoxyribonuclease I [Escherichia coli 53638]
gi|430898485|gb|ELC20618.1| exodeoxyribonuclease I [Escherichia coli KTE12]
gi|431115210|gb|ELE18734.1| exodeoxyribonuclease I [Escherichia coli KTE56]
gi|431656948|gb|ELJ23921.1| exodeoxyribonuclease I [Escherichia coli KTE166]
Length = 475
Score = 325 bits (833), Expect = 1e-85, Method: Composition-based stats.
Identities = 169/434 (38%), Positives = 253/434 (58%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYK-INNSDLEL 664
V++ L R + N+K + N + +K IF++ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFVEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|293410372|ref|ZP_06653948.1| sbcB [Escherichia coli B354]
gi|291470840|gb|EFF13324.1| sbcB [Escherichia coli B354]
Length = 475
Score = 325 bits (833), Expect = 1e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATISMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|16129952|ref|NP_416515.1| exonuclease I [Escherichia coli str. K-12 substr. MG1655]
gi|170081641|ref|YP_001730961.1| exonuclease I [Escherichia coli str. K-12 substr. DH10B]
gi|238901201|ref|YP_002926997.1| exonuclease I [Escherichia coli BW2952]
gi|386595199|ref|YP_006091599.1| Exodeoxyribonuclease I [Escherichia coli DH1]
gi|387621721|ref|YP_006129348.1| exonuclease I [Escherichia coli DH1]
gi|388478065|ref|YP_490253.1| exonuclease I [Escherichia coli str. K-12 substr. W3110]
gi|415774679|ref|ZP_11487026.1| exodeoxyribonuclease I [Escherichia coli 3431]
gi|423702247|ref|ZP_17676706.1| exodeoxyribonuclease I [Escherichia coli H730]
gi|432461033|ref|ZP_19703183.1| exodeoxyribonuclease I [Escherichia coli KTE204]
gi|432671088|ref|ZP_19906618.1| exodeoxyribonuclease I [Escherichia coli KTE119]
gi|433048366|ref|ZP_20235722.1| exodeoxyribonuclease I [Escherichia coli KTE120]
gi|433068304|ref|ZP_20255098.1| exodeoxyribonuclease I [Escherichia coli KTE128]
gi|442594523|ref|ZP_21012419.1| Exodeoxyribonuclease I [Escherichia coli O10:K5(L):H4 str. ATCC
23506]
gi|462029|sp|P04995.2|EX1_ECOLI RecName: Full=Exodeoxyribonuclease I; Short=Exonuclease I; AltName:
Full=DNA deoxyribophosphodiesterase; Short=dRPase
gi|405954|gb|AAA16417.1| exonuclease I [Escherichia coli]
gi|1736685|dbj|BAA15839.1| exonuclease I [Escherichia coli str. K12 substr. W3110]
gi|1788321|gb|AAC75072.1| exonuclease I [Escherichia coli str. K-12 substr. MG1655]
gi|89330228|emb|CAJ84171.1| exodeoxyribonuclease I [Escherichia coli str. K-12 substr. MG1655]
gi|169889476|gb|ACB03183.1| exonuclease I [Escherichia coli str. K-12 substr. DH10B]
gi|238861050|gb|ACR63048.1| exonuclease I [Escherichia coli BW2952]
gi|260448888|gb|ACX39310.1| Exodeoxyribonuclease I [Escherichia coli DH1]
gi|315136644|dbj|BAJ43803.1| exonuclease I [Escherichia coli DH1]
gi|315618014|gb|EFU98606.1| exodeoxyribonuclease I [Escherichia coli 3431]
gi|359332408|dbj|BAL38855.1| exonuclease I [Escherichia coli str. K-12 substr. MDS42]
gi|385710809|gb|EIG47785.1| exodeoxyribonuclease I [Escherichia coli H730]
gi|430989162|gb|ELD05623.1| exodeoxyribonuclease I [Escherichia coli KTE204]
gi|431210403|gb|ELF08458.1| exodeoxyribonuclease I [Escherichia coli KTE119]
gi|431565025|gb|ELI38169.1| exodeoxyribonuclease I [Escherichia coli KTE120]
gi|431584474|gb|ELI56453.1| exodeoxyribonuclease I [Escherichia coli KTE128]
gi|441605515|emb|CCP97699.1| Exodeoxyribonuclease I [Escherichia coli O10:K5(L):H4 str. ATCC
23506]
Length = 475
Score = 325 bits (833), Expect = 1e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|417146152|ref|ZP_11987110.1| exodeoxyribonuclease I [Escherichia coli 1.2264]
gi|417629223|ref|ZP_12279461.1| exodeoxyribonuclease I [Escherichia coli STEC_MHI813]
gi|345373191|gb|EGX05152.1| exodeoxyribonuclease I [Escherichia coli STEC_MHI813]
gi|386163604|gb|EIH25399.1| exodeoxyribonuclease I [Escherichia coli 1.2264]
Length = 475
Score = 325 bits (833), Expect = 1e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|417947067|ref|ZP_12590269.1| exonuclease I [Escherichia coli XH140A]
gi|417978629|ref|ZP_12619390.1| exonuclease I [Escherichia coli XH001]
gi|450244838|ref|ZP_21900506.1| exonuclease I [Escherichia coli S17]
gi|342361195|gb|EGU25340.1| exonuclease I [Escherichia coli XH140A]
gi|344191718|gb|EGV45827.1| exonuclease I [Escherichia coli XH001]
gi|449320875|gb|EMD10897.1| exonuclease I [Escherichia coli S17]
Length = 474
Score = 325 bits (833), Expect = 1e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 361 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 420
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 421 AEQQRWLEHRRQVF 434
>gi|218558892|ref|YP_002391805.1| exonuclease I [Escherichia coli S88]
gi|432363047|ref|ZP_19606214.1| exodeoxyribonuclease I [Escherichia coli KTE5]
gi|218365661|emb|CAR03398.1| exonuclease I [Escherichia coli S88]
gi|430886266|gb|ELC09121.1| exodeoxyribonuclease I [Escherichia coli KTE5]
Length = 475
Score = 325 bits (833), Expect = 1e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGIHWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|260580789|ref|ZP_05848615.1| exonuclease I [Haemophilus influenzae RdAW]
gi|260092606|gb|EEW76543.1| exonuclease I [Haemophilus influenzae RdAW]
Length = 473
Score = 325 bits (833), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 168/427 (39%), Positives = 246/427 (57%), Gaps = 7/427 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YDYE+FG+N DRP QFA IRTD N I PIM YCK D+LP P A ++T I
Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C G+ E +FA+ I F +P T +GYN I +DDE+TR+ F+RN I+PYE WK
Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI W Y ++G PSF+LE L+ N++ H+ AHDA++DV A
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANSIEHENAHDAMADVYA 185
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF + R KK + + P +++ M + + + P+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPL 245
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLNRSP 607
HP N+N LI +L D L +++R L KK +E +P+ ++H+N+ P
Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLAKSADELRADLYTKKLELEERGVSSVPLKLVHINKCP 305
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
I ++ K L R D N+ + + IF + + S+ N++
Sbjct: 306 I-LAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASN--DNVE 362
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
ELYN F S D +AILRS+ +KLS FE+K++ EL+F YRAR+F +TL+ E
Sbjct: 363 TELYNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQ 422
Query: 728 KRWKKYR 734
+WKKYR
Sbjct: 423 IKWKKYR 429
>gi|372269176|ref|ZP_09505224.1| exonuclease I [Alteromonas sp. S89]
Length = 483
Score = 325 bits (833), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 174/480 (36%), Positives = 268/480 (55%), Gaps = 20/480 (4%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+T W+DYET+G++ D+P QFA IRTD LN + +P+M+Y KP D LP P A L+T
Sbjct: 7 GTTLYWHDYETWGVDPGADKPSQFAGIRTDEDLNIVGDPLMIYAKPTSDCLPQPMAALVT 66
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
+ PQ G+PE +F I PGT VGYN++ FDDE+TR +RNL++PYERE
Sbjct: 67 GLAPQKAFAEGLPEIEFIQKILDELGAPGTCGVGYNSLRFDDEVTRHTLYRNLLDPYERE 126
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGK----PSFKLEHLSFVNNLSHKKAHDA 485
WK+ SRWD+I++++ Y L P GI WP ++ PSF+LE L+ N +SH+ AHDA
Sbjct: 127 WKSGNSRWDIIDMVRLTYALRPEGIVWPERDGADGTRVPSFRLEELTAANGISHEGAHDA 186
Query: 486 LSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIAR-PFFYITHMFSSKHSY 544
LSDV AT+ +ARLIR P+L++++ LR+K+ V A+I P R P +I+ + H +
Sbjct: 187 LSDVHATIDMARLIREKQPKLYDYVYKLRRKQEV-AKILNPRERKPLLHISGKVPASHGH 245
Query: 545 ISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE-DIP--ISMI 601
++ + P+ +HP+N+N +I NL DP+ L D +R+ L ++ E ++P + +I
Sbjct: 246 LTYVLPLAMHPVNRNAVICANLAMDPQPILDLDAEALRERLYTARDQLAEGELPAGLKLI 305
Query: 602 HLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSD 661
H+NR P V++ +LS K D N + L+ T ++FLD + D
Sbjct: 306 HMNRCP-VLAPANMLSDERAAELKIDKEACRANWQALQG-LDLTEKLHQVFLDGEFPKKD 363
Query: 662 LELNIDEELYNNFISKKDNLKLA----ILRSMSPKKLSNVNFCFENKKLEELIFLYRARN 717
+E LY+ F++ D L P+ L+ F + +L EL+F RARN
Sbjct: 364 VEAR----LYDGFMNDADRDTCRQLHNALAGRGPEALA-AEVPFSDSRLPELLFRLRARN 418
Query: 718 FIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYG 777
F +TLS E +RW+++R R + + Y E + L++ +L+ L +G
Sbjct: 419 FPQTLSEDEQERWEEWRYQRLTDPQFGASITMEPYFEEIARLREEYPERIALLDQLEAWG 478
>gi|424932665|ref|ZP_18351037.1| Exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KpQ3]
gi|407806852|gb|EKF78103.1| Exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KpQ3]
Length = 474
Score = 325 bits (833), Expect = 1e-85, Method: Composition-based stats.
Identities = 166/429 (38%), Positives = 245/429 (57%), Gaps = 7/429 (1%)
Query: 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKIT 372
FL++DYETFG + DRP QFAAIRTD LN + P + YCKPA D+LP P+A +IT IT
Sbjct: 10 FLFHDYETFGTSPSLDRPAQFAAIRTDAELNVLGEPEVFYCKPADDYLPQPQAVMITGIT 69
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
PQ L G E FA I +F P T VGYN + FDDE+TR +F+RN +PY W++
Sbjct: 70 PQEALAKGDNEATFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRAT 492
+ SRWDL++V++A Y L P GI WP + G PSF+LEHL+ N + H+ AHDA++DV AT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGIAWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVYAT 189
Query: 493 LGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPIC 552
+ +A+L++ PRLF+++ S R K+ + I P +P +++ MF + SL+ P+
Sbjct: 190 IAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAPLA 249
Query: 553 IHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIVI 610
HP N+N +I +L D L D + +R+ L + + PI ++HLN+ P V+
Sbjct: 250 WHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDLPAAPIKLVHLNKCP-VL 308
Query: 611 SNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL-ELNIDEE 669
+ L R + +N A + N + +K+ Y + N+D +
Sbjct: 309 AQANTLRPQDADRLGISIQRCLEN---AQLLRANPQVREKVVAVYAEAEPFVPSENVDAQ 365
Query: 670 LYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKR 729
LYN F S D + I+ P+ L ++ F +K++E L+F YRARNF TL E +R
Sbjct: 366 LYNGFFSDADRAAMKIVLETEPRNLPALDITFADKRIERLLFNYRARNFPGTLDEHEQQR 425
Query: 730 WKKYRISRF 738
W ++R F
Sbjct: 426 WLEHRRQVF 434
>gi|425075880|ref|ZP_18478983.1| exodeoxyribonuclease I [Klebsiella pneumoniae subsp. pneumoniae
WGLW1]
gi|425086516|ref|ZP_18489609.1| exodeoxyribonuclease I [Klebsiella pneumoniae subsp. pneumoniae
WGLW3]
gi|425092393|ref|ZP_18495478.1| exodeoxyribonuclease I [Klebsiella pneumoniae subsp. pneumoniae
WGLW5]
gi|405593860|gb|EKB67296.1| exodeoxyribonuclease I [Klebsiella pneumoniae subsp. pneumoniae
WGLW1]
gi|405605431|gb|EKB78497.1| exodeoxyribonuclease I [Klebsiella pneumoniae subsp. pneumoniae
WGLW3]
gi|405611619|gb|EKB84385.1| exodeoxyribonuclease I [Klebsiella pneumoniae subsp. pneumoniae
WGLW5]
Length = 474
Score = 325 bits (833), Expect = 1e-85, Method: Composition-based stats.
Identities = 166/429 (38%), Positives = 245/429 (57%), Gaps = 7/429 (1%)
Query: 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKIT 372
FL++DYETFG + DRP QFAAIRTD LN + P + YCKPA D+LP P+A +IT IT
Sbjct: 10 FLFHDYETFGTSPSLDRPAQFAAIRTDAELNVLGEPEVFYCKPADDYLPQPQAVMITGIT 69
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
PQ L G E FA I +F P T VGYN + FDDE+TR +F+RN +PY W++
Sbjct: 70 PQEALAKGDNEATFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRAT 492
+ SRWDL++V++A Y L P GI WP + G PSF+LEHL+ N + H+ AHDA++DV AT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGIAWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVYAT 189
Query: 493 LGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPIC 552
+ +A+L++ PRLF+++ S R K+ + I P +P +++ MF + SL+ P+
Sbjct: 190 IAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAPLA 249
Query: 553 IHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIVI 610
HP N+N +I +L D L D + +R+ L + + PI ++HLN+ P V+
Sbjct: 250 WHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDLPAAPIKLVHLNKCP-VL 308
Query: 611 SNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL-ELNIDEE 669
+ L R + +N A + N + +K+ Y + N+D +
Sbjct: 309 AQANTLRPQDADRLGISIQRCLEN---AQLLRANPQVREKVVAVYAEAEPFVPSENVDAQ 365
Query: 670 LYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKR 729
LYN F S D + I+ P+ L ++ F +K++E L+F YRARNF TL E +R
Sbjct: 366 LYNGFFSDADRAAMKIVLETEPRNLPALDITFADKRIERLLFNYRARNFPGTLDEHEQQR 425
Query: 730 WKKYRISRF 738
W ++R F
Sbjct: 426 WLEHRRQVF 434
>gi|427402574|ref|ZP_18893571.1| DNA polymerase I [Massilia timonae CCUG 45783]
gi|425718380|gb|EKU81327.1| DNA polymerase I [Massilia timonae CCUG 45783]
Length = 944
Score = 325 bits (833), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 147/278 (52%), Positives = 205/278 (73%), Gaps = 6/278 (2%)
Query: 771 NALLMYGKIDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFD 830
N LL+ +DGSS +YRA++ALPD+R+ D FP GA++G + MLR+L ++ A YIAC+FD
Sbjct: 24 NTLLL---VDGSSYLYRAYHALPDLRSPDGFPTGAMHGMVNMLRRLRADFPAAYIACVFD 80
Query: 831 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 890
AKGK FR+ LYP YKATR MP +L QI IH++V+ +GWPIL++ GVEADDVIGTLA
Sbjct: 81 AKGKTFRDDLYPEYKATRASMPEDLGKQIEPIHEVVRYMGWPILMVDGVEADDVIGTLAV 140
Query: 891 QAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSL 948
QA T +K ++ST DKD+AQLV++K+ LIN N+ D ++++FGV P +I+DY +L
Sbjct: 141 QA-TARGMKTVVSTGDKDLAQLVNDKVMLINTMTNERMDEAGVLAKFGVPPNRIIDYLTL 199
Query: 949 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI 1008
+GD DN+PGV K GPKTAVK L + SL+ +I NA +I G +G NL+ AL WLPK +++
Sbjct: 200 VGDTVDNVPGVAKCGPKTAVKWLTLHGSLDGVIENAASIGGAVGANLQAALEWLPKGREL 259
Query: 1009 LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
+T+KTDCDL K+++S ESL+ +P+D + L F +Y
Sbjct: 260 ITVKTDCDLVKHVISFEESLVGRPEDAEALRDFFQRYG 297
>gi|419181308|ref|ZP_13724923.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC7C]
gi|419186757|ref|ZP_13730272.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC7D]
gi|420386049|ref|ZP_14885403.1| exodeoxyribonuclease I [Escherichia coli EPECa12]
gi|378023874|gb|EHV86542.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC7C]
gi|378029329|gb|EHV91942.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC7D]
gi|391305534|gb|EIQ63315.1| exodeoxyribonuclease I [Escherichia coli EPECa12]
Length = 474
Score = 325 bits (833), Expect = 1e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 248 LAWHPENRNTVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 361 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 420
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 421 AEQQRWLEHRRQVF 434
>gi|417259970|ref|ZP_12047490.1| exodeoxyribonuclease I [Escherichia coli 2.3916]
gi|417639731|ref|ZP_12289876.1| exodeoxyribonuclease I [Escherichia coli TX1999]
gi|418303361|ref|ZP_12915155.1| exodeoxyribonuclease I [Escherichia coli UMNF18]
gi|419170662|ref|ZP_13714550.1| exodeoxyribonuclease I [Escherichia coli DEC7A]
gi|419192045|ref|ZP_13735501.1| exodeoxyribonuclease I [Escherichia coli DEC7E]
gi|339415459|gb|AEJ57131.1| exodeoxyribonuclease I [Escherichia coli UMNF18]
gi|345393460|gb|EGX23234.1| exodeoxyribonuclease I [Escherichia coli TX1999]
gi|378015704|gb|EHV78596.1| exodeoxyribonuclease I [Escherichia coli DEC7A]
gi|378039104|gb|EHW01607.1| exodeoxyribonuclease I [Escherichia coli DEC7E]
gi|386226287|gb|EII48592.1| exodeoxyribonuclease I [Escherichia coli 2.3916]
Length = 475
Score = 325 bits (833), Expect = 1e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNTVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|300920252|ref|ZP_07136698.1| exonuclease [Escherichia coli MS 115-1]
gi|301018905|ref|ZP_07183135.1| exonuclease [Escherichia coli MS 196-1]
gi|299882459|gb|EFI90670.1| exonuclease [Escherichia coli MS 196-1]
gi|300412754|gb|EFJ96064.1| exonuclease [Escherichia coli MS 115-1]
Length = 499
Score = 325 bits (833), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 170/444 (38%), Positives = 259/444 (58%), Gaps = 15/444 (3%)
Query: 303 DILLHNG--NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFL 360
++++++G STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+L
Sbjct: 23 NLMMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYL 82
Query: 361 PDPRACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWR 420
P P A LIT ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+R
Sbjct: 83 PQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYR 142
Query: 421 NLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHK 480
N +PY W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H
Sbjct: 143 NFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHS 202
Query: 481 KAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSS 540
AHDA++DV AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF +
Sbjct: 203 NAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGA 262
Query: 541 KHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPI 598
S + P+ HP N+N +I +L D L D + +R+ L K ++ +P+
Sbjct: 263 WRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPV 322
Query: 599 SMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDY 655
++H+N+ P V++ L R + N+K + N + +K IF +
Sbjct: 323 KLVHINKCP-VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEA 378
Query: 656 K-INNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYR 714
+ SD N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YR
Sbjct: 379 EPFTPSD---NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYR 435
Query: 715 ARNFIETLSYKELKRWKKYRISRF 738
ARNF TL Y E +RW ++R F
Sbjct: 436 ARNFPGTLDYAEQQRWLEHRRQVF 459
>gi|284919774|emb|CAX65551.1| putative exonuclease I [Enterobacter hormaechei]
Length = 502
Score = 325 bits (833), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 172/475 (36%), Positives = 264/475 (55%), Gaps = 14/475 (2%)
Query: 309 GNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLI 368
TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A ++
Sbjct: 34 ARPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVMV 93
Query: 369 TKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYER 428
T ITPQ + G+ E +FA I +F P T VGYN I FDDE+TR +F+RN +PY
Sbjct: 94 TGITPQEARDKGVSEAEFARRIHDLFTVPNTCVVGYNNIRFDDEVTRNIFYRNFYDPYAW 153
Query: 429 EWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSD 488
W+N SRWDL+++++ Y L P GI WP ++G PSF+LEHL+ N + H AHDA++D
Sbjct: 154 SWQNRNSRWDLLDIMRVCYALRPEGINWPENDDGLPSFRLEHLTRANGIEHSNAHDAMAD 213
Query: 489 VRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLM 548
V AT+ +A+L++ PRLF ++LS R K+ ++ I P +P +I+ MF + S +
Sbjct: 214 VYATIAMAKLVKTAQPRLFEYLLSHRSKQKLMTLIDVPQMKPLVHISGMFGAWRGNTSWV 273
Query: 549 WPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRS 606
P+ HP N+N +I +L D L + + +R+ L K + + +P+ ++H+N+
Sbjct: 274 APLAWHPDNRNAVIMVDLAGDISPLLELNSDTLRERLYTPKEALGDLPAVPVKLVHINKC 333
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL-ELN 665
P V++ L R + N+K + +N + +K+ + + N
Sbjct: 334 P-VLAQANTLRPEDADRLGINRQHCLDNLKV---LRDNPQVREKVVAIFAEAEPFVPSEN 389
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARN+ TL
Sbjct: 390 VDAQLYNGFFSDADRAAMNIVLQTDPRNLPALDITFADKRIEKLMFNYRARNYPGTLDEA 449
Query: 726 ELKRWKKYRISRFYNKKNNLY--NINMFYLEIESLLKKANEHDTKILNALLMYGK 778
E +RW ++R + F + N Y + M Y + E N +L AL Y +
Sbjct: 450 EQERWLQHRRNVFTPEFLNSYAQELEMLYGQYE-----GNAEKQALLKALFQYAQ 499
>gi|262040031|ref|ZP_06013293.1| exodeoxyribonuclease I [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259042608|gb|EEW43617.1| exodeoxyribonuclease I [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 474
Score = 325 bits (833), Expect = 1e-85, Method: Composition-based stats.
Identities = 166/429 (38%), Positives = 245/429 (57%), Gaps = 7/429 (1%)
Query: 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKIT 372
FL++DYETFG + DRP QFAAIRTD LN + P + YCKPA D+LP P+A +IT IT
Sbjct: 10 FLFHDYETFGTSPSLDRPAQFAAIRTDAELNVLGEPEVFYCKPADDYLPQPQAVMITGIT 69
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
PQ L G E FA I +F P T VGYN + FDDE+TR +F+RN +PY W++
Sbjct: 70 PQEALAKGDNEAAFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRAT 492
+ SRWDL++V++A Y L P GI WP + G PSF+LEHL+ N + H+ AHDA++DV AT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGIAWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVYAT 189
Query: 493 LGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPIC 552
+ +A+L++ PRLF+++ S R K+ + I P +P +++ MF + SL+ P+
Sbjct: 190 IAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAPLA 249
Query: 553 IHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIVI 610
HP N+N +I +L D L D + +R+ L + + PI ++HLN+ P V+
Sbjct: 250 WHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDLPAAPIKLVHLNKCP-VL 308
Query: 611 SNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL-ELNIDEE 669
+ L R + +N A + N + +K+ Y + N+D +
Sbjct: 309 AQANTLRPQDADRLGISIQRCLEN---AQLLRANPQVREKVVAVYAEAEPFVPSENVDAQ 365
Query: 670 LYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKR 729
LYN F S D + I+ P+ L ++ F +K++E L+F YRARNF TL E +R
Sbjct: 366 LYNGFFSDADRAAMKIVLETEPRNLPALDITFADKRIERLLFNYRARNFPGTLDEHEQQR 425
Query: 730 WKKYRISRF 738
W ++R F
Sbjct: 426 WLEHRRQVF 434
>gi|425422852|ref|ZP_18804020.1| exonuclease [Escherichia coli 0.1288]
gi|408344169|gb|EKJ58557.1| exonuclease [Escherichia coli 0.1288]
Length = 474
Score = 325 bits (833), Expect = 1e-85, Method: Composition-based stats.
Identities = 168/434 (38%), Positives = 249/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF ++ + R K ++A I P +P +++ MF + S + P
Sbjct: 188 ATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ IP+ ++H+N+ P
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAIPVKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 361 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 420
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 421 AEQQRWLEHRRQVF 434
>gi|387507315|ref|YP_006159571.1| exonuclease I [Escherichia coli O55:H7 str. RM12579]
gi|419045999|ref|ZP_13592941.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC3A]
gi|419051640|ref|ZP_13598518.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC3B]
gi|419057646|ref|ZP_13604457.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC3C]
gi|419063141|ref|ZP_13609875.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC3D]
gi|419076041|ref|ZP_13621566.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC3F]
gi|419092962|ref|ZP_13638252.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC4C]
gi|419109979|ref|ZP_13655041.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC4F]
gi|419115306|ref|ZP_13660325.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC5A]
gi|419120941|ref|ZP_13665901.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC5B]
gi|419126507|ref|ZP_13671394.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC5C]
gi|419131996|ref|ZP_13676835.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC5D]
gi|420281047|ref|ZP_14783286.1| exonuclease [Escherichia coli TW06591]
gi|420315780|ref|ZP_14817658.1| exonuclease [Escherichia coli EC1734]
gi|421831399|ref|ZP_16266692.1| exonuclease [Escherichia coli PA7]
gi|423721734|ref|ZP_17695913.1| exonuclease [Escherichia coli PA31]
gi|424077994|ref|ZP_17815011.1| exonuclease [Escherichia coli FDA505]
gi|424110409|ref|ZP_17844681.1| exonuclease [Escherichia coli 93-001]
gi|424122511|ref|ZP_17855873.1| exonuclease [Escherichia coli PA5]
gi|424128588|ref|ZP_17861526.1| exonuclease [Escherichia coli PA9]
gi|424141434|ref|ZP_17873364.1| exonuclease [Escherichia coli PA14]
gi|424147867|ref|ZP_17879280.1| exonuclease [Escherichia coli PA15]
gi|424153733|ref|ZP_17884725.1| exonuclease [Escherichia coli PA24]
gi|424450208|ref|ZP_17901946.1| exonuclease [Escherichia coli PA32]
gi|424456377|ref|ZP_17907558.1| exonuclease [Escherichia coli PA33]
gi|424475672|ref|ZP_17925029.1| exonuclease [Escherichia coli PA42]
gi|424481356|ref|ZP_17930372.1| exonuclease [Escherichia coli TW07945]
gi|424487527|ref|ZP_17936129.1| exonuclease [Escherichia coli TW09098]
gi|424514434|ref|ZP_17959181.1| exonuclease [Escherichia coli TW14313]
gi|424526661|ref|ZP_17970407.1| exonuclease [Escherichia coli EC4421]
gi|424532828|ref|ZP_17976199.1| exonuclease [Escherichia coli EC4422]
gi|424538858|ref|ZP_17981836.1| exonuclease [Escherichia coli EC4013]
gi|424557279|ref|ZP_17998731.1| exonuclease [Escherichia coli EC4436]
gi|424563620|ref|ZP_18004655.1| exonuclease [Escherichia coli EC4437]
gi|425156483|ref|ZP_18555779.1| exonuclease [Escherichia coli PA34]
gi|425163032|ref|ZP_18561927.1| exonuclease [Escherichia coli FDA506]
gi|425168636|ref|ZP_18567148.1| exonuclease [Escherichia coli FDA507]
gi|425174716|ref|ZP_18572855.1| exonuclease [Escherichia coli FDA504]
gi|425186982|ref|ZP_18584299.1| exonuclease [Escherichia coli FRIK1997]
gi|425218503|ref|ZP_18613509.1| exonuclease [Escherichia coli PA23]
gi|425225028|ref|ZP_18619543.1| exonuclease [Escherichia coli PA49]
gi|425231319|ref|ZP_18625399.1| exonuclease [Escherichia coli PA45]
gi|425237355|ref|ZP_18631090.1| exonuclease [Escherichia coli TT12B]
gi|425249612|ref|ZP_18642576.1| exonuclease [Escherichia coli 5905]
gi|425267785|ref|ZP_18659434.1| exonuclease [Escherichia coli 5412]
gi|425311829|ref|ZP_18701044.1| exonuclease [Escherichia coli EC1735]
gi|425317783|ref|ZP_18706605.1| exonuclease [Escherichia coli EC1736]
gi|425323877|ref|ZP_18712281.1| exonuclease [Escherichia coli EC1737]
gi|425411561|ref|ZP_18793365.1| exonuclease [Escherichia coli NE098]
gi|425417860|ref|ZP_18799168.1| exonuclease [Escherichia coli FRIK523]
gi|425429181|ref|ZP_18809831.1| exonuclease [Escherichia coli 0.1304]
gi|429078917|ref|ZP_19142070.1| exodeoxyribonuclease I [Escherichia coli 99.0713]
gi|374359309|gb|AEZ41016.1| exonuclease I [Escherichia coli O55:H7 str. RM12579]
gi|377894318|gb|EHU58742.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC3A]
gi|377894493|gb|EHU58913.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC3B]
gi|377905730|gb|EHU69990.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC3C]
gi|377910868|gb|EHU75052.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC3D]
gi|377922392|gb|EHU86379.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC3F]
gi|377943152|gb|EHV06874.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC4C]
gi|377957900|gb|EHV21425.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC4F]
gi|377961101|gb|EHV24575.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC5A]
gi|377967803|gb|EHV31205.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC5B]
gi|377975641|gb|EHV38960.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC5C]
gi|377975878|gb|EHV39190.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC5D]
gi|390644564|gb|EIN23811.1| exonuclease [Escherichia coli FDA505]
gi|390661922|gb|EIN39567.1| exonuclease [Escherichia coli 93-001]
gi|390682437|gb|EIN58200.1| exonuclease [Escherichia coli PA5]
gi|390684697|gb|EIN60303.1| exonuclease [Escherichia coli PA9]
gi|390702179|gb|EIN76390.1| exonuclease [Escherichia coli PA15]
gi|390702509|gb|EIN76661.1| exonuclease [Escherichia coli PA14]
gi|390725659|gb|EIN98153.1| exonuclease [Escherichia coli PA24]
gi|390744081|gb|EIO15013.1| exonuclease [Escherichia coli PA32]
gi|390744098|gb|EIO15029.1| exonuclease [Escherichia coli PA31]
gi|390746555|gb|EIO17263.1| exonuclease [Escherichia coli PA33]
gi|390770405|gb|EIO39261.1| exonuclease [Escherichia coli PA42]
gi|390781879|gb|EIO49548.1| exonuclease [Escherichia coli TW06591]
gi|390793034|gb|EIO60380.1| exonuclease [Escherichia coli TW07945]
gi|390808020|gb|EIO74868.1| exonuclease [Escherichia coli TW09098]
gi|390849066|gb|EIP12513.1| exonuclease [Escherichia coli TW14313]
gi|390851346|gb|EIP14638.1| exonuclease [Escherichia coli EC4421]
gi|390861814|gb|EIP24043.1| exonuclease [Escherichia coli EC4422]
gi|390866640|gb|EIP28588.1| exonuclease [Escherichia coli EC4013]
gi|390884356|gb|EIP44685.1| exonuclease [Escherichia coli EC4436]
gi|390895332|gb|EIP54804.1| exonuclease [Escherichia coli EC4437]
gi|390908285|gb|EIP67115.1| exonuclease [Escherichia coli EC1734]
gi|408066160|gb|EKH00623.1| exonuclease [Escherichia coli PA7]
gi|408072887|gb|EKH07199.1| exonuclease [Escherichia coli PA34]
gi|408078620|gb|EKH12748.1| exonuclease [Escherichia coli FDA506]
gi|408083339|gb|EKH17205.1| exonuclease [Escherichia coli FDA507]
gi|408092540|gb|EKH25726.1| exonuclease [Escherichia coli FDA504]
gi|408104957|gb|EKH37176.1| exonuclease [Escherichia coli FRIK1997]
gi|408139362|gb|EKH68973.1| exonuclease [Escherichia coli PA23]
gi|408141342|gb|EKH70811.1| exonuclease [Escherichia coli PA49]
gi|408147001|gb|EKH76046.1| exonuclease [Escherichia coli PA45]
gi|408155521|gb|EKH83829.1| exonuclease [Escherichia coli TT12B]
gi|408164578|gb|EKH92370.1| exonuclease [Escherichia coli 5905]
gi|408183279|gb|EKI09731.1| exonuclease [Escherichia coli 5412]
gi|408228812|gb|EKI52332.1| exonuclease [Escherichia coli EC1735]
gi|408239565|gb|EKI62312.1| exonuclease [Escherichia coli EC1736]
gi|408243863|gb|EKI66356.1| exonuclease [Escherichia coli EC1737]
gi|408327315|gb|EKJ43041.1| exonuclease [Escherichia coli NE098]
gi|408337601|gb|EKJ52301.1| exonuclease [Escherichia coli FRIK523]
gi|408347339|gb|EKJ61552.1| exonuclease [Escherichia coli 0.1304]
gi|427329819|gb|EKW91124.1| exodeoxyribonuclease I [Escherichia coli 99.0713]
Length = 474
Score = 325 bits (833), Expect = 1e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 361 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 420
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 421 AEQQRWLEHRRQVF 434
>gi|331642634|ref|ZP_08343769.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli H736]
gi|331039432|gb|EGI11652.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli H736]
Length = 491
Score = 325 bits (833), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 178/486 (36%), Positives = 277/486 (56%), Gaps = 22/486 (4%)
Query: 303 DILLHNG--NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFL 360
++++++G STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+L
Sbjct: 15 NLMMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYL 74
Query: 361 PDPRACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWR 420
P P A LIT ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+R
Sbjct: 75 PQPGAVLITGITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYR 134
Query: 421 NLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHK 480
N +PY W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H
Sbjct: 135 NFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHS 194
Query: 481 KAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSS 540
AHDA++DV AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF +
Sbjct: 195 NAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGA 254
Query: 541 KHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPI 598
S + P+ HP N+N +I +L D L D + +R+ L K ++ +P+
Sbjct: 255 WRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPV 314
Query: 599 SMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDY 655
++H+N+ P V++ L R + N+K + N + +K IF +
Sbjct: 315 KLVHINKCP-VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEA 370
Query: 656 K-INNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYR 714
+ SD N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YR
Sbjct: 371 EPFTPSD---NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYR 427
Query: 715 ARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI--LNA 772
ARNF TL Y E +RW ++R F ++ + + EI+ L ++ + K+ L A
Sbjct: 428 ARNFPGTLDYAEQQRWLEHRRQIFTSEF-----LQGYAEEIQMLAQQYADDKEKVALLKA 482
Query: 773 LLMYGK 778
L Y +
Sbjct: 483 LWQYAE 488
>gi|415829738|ref|ZP_11515811.1| exodeoxyribonuclease I [Escherichia coli OK1357]
gi|417597215|ref|ZP_12247861.1| exodeoxyribonuclease I [Escherichia coli 3030-1]
gi|417688893|ref|ZP_12338130.1| exodeoxyribonuclease I [Shigella boydii 5216-82]
gi|419930709|ref|ZP_14448305.1| exonuclease I [Escherichia coli 541-1]
gi|323183799|gb|EFZ69190.1| exodeoxyribonuclease I [Escherichia coli OK1357]
gi|332092391|gb|EGI97464.1| exodeoxyribonuclease I [Shigella boydii 5216-82]
gi|345354783|gb|EGW87000.1| exodeoxyribonuclease I [Escherichia coli 3030-1]
gi|388399727|gb|EIL60510.1| exonuclease I [Escherichia coli 541-1]
Length = 475
Score = 325 bits (833), Expect = 1e-85, Method: Composition-based stats.
Identities = 168/434 (38%), Positives = 249/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF ++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ IP+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAIPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|260582707|ref|ZP_05850495.1| exodeoxyribonuclease I [Haemophilus influenzae NT127]
gi|260094273|gb|EEW78173.1| exodeoxyribonuclease I [Haemophilus influenzae NT127]
Length = 473
Score = 325 bits (833), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 174/459 (37%), Positives = 258/459 (56%), Gaps = 18/459 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YDYE+FG+N DRP QFA IRTD N I PIM YCK D+LP P A ++T I
Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C G+ E +FA+ I F +P T +GYN I +DDE+TR+ F+RN I+PYE WK
Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI W Y ++G PSF+LE L+ N + H+ AHDA++DV A
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF + R KK + I P +++ M + + + P+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLIDTGAMTPLVHVSGMLGNYRGNCTWVAPL 245
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLNRSP 607
HP N+N LI +L D L +++R L KK +E +P+ ++H+N+ P
Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKLELEERGVSSVPLKLVHINKCP 305
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
I ++ K L R D N+ + + IF + + S+ N++
Sbjct: 306 I-LAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASN--DNVE 362
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
ELYN F S D +AILRS+ +KLS + FE++++ EL+F YRAR+F +TL+ E
Sbjct: 363 TELYNGFFSNADKNNMAILRSLPAEKLSEHSLAFEDRRIPELLFHYRARHFYKTLTRAEQ 422
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLKK-ANEH 765
+W+KYR ++ +E ES L++ A EH
Sbjct: 423 IKWQKYRQNKLEKSA----------VEFESSLQRLAEEH 451
>gi|157267360|ref|NP_288516.2| exonuclease I [Escherichia coli O157:H7 str. EDL933]
gi|169822936|gb|AAG57070.2|AE005426_12 exonuclease I, 3' --> 5' specific; deoxyribophosphodiesterase
[Escherichia coli O157:H7 str. EDL933]
Length = 475
Score = 325 bits (833), Expect = 1e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|15832067|ref|NP_310840.1| exonuclease I [Escherichia coli O157:H7 str. Sakai]
gi|168764097|ref|ZP_02789104.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4501]
gi|217329517|ref|ZP_03445596.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. TW14588]
gi|291283248|ref|YP_003500066.1| Exonuclease I [Escherichia coli O55:H7 str. CB9615]
gi|387883162|ref|YP_006313464.1| exonuclease I [Escherichia coli Xuzhou21]
gi|416315090|ref|ZP_11659098.1| Exodeoxyribonuclease I [Escherichia coli O157:H7 str. 1044]
gi|416324821|ref|ZP_11665485.1| Exodeoxyribonuclease I [Escherichia coli O157:H7 str. 1125]
gi|416786525|ref|ZP_11879044.1| exonuclease I [Escherichia coli O157:H- str. 493-89]
gi|416797963|ref|ZP_11883965.1| exonuclease I [Escherichia coli O157:H- str. H 2687]
gi|416808941|ref|ZP_11888628.1| exonuclease I [Escherichia coli O55:H7 str. 3256-97]
gi|416819366|ref|ZP_11893187.1| exonuclease I [Escherichia coli O55:H7 str. USDA 5905]
gi|416829905|ref|ZP_11898500.1| exonuclease I [Escherichia coli O157:H7 str. LSU-61]
gi|419137007|ref|ZP_13681804.1| exodeoxyribonuclease I [Escherichia coli DEC5E]
gi|421818780|ref|ZP_16254282.1| exodeoxyribonuclease I [Escherichia coli 10.0821]
gi|425098554|ref|ZP_18501317.1| exodeoxyribonuclease I [Escherichia coli 3.4870]
gi|425104689|ref|ZP_18507026.1| exodeoxyribonuclease I [Escherichia coli 5.2239]
gi|425110568|ref|ZP_18512528.1| exonuclease [Escherichia coli 6.0172]
gi|425126388|ref|ZP_18527601.1| exodeoxyribonuclease I [Escherichia coli 8.0586]
gi|425132225|ref|ZP_18533098.1| exodeoxyribonuclease I [Escherichia coli 8.2524]
gi|425144598|ref|ZP_18544617.1| exodeoxyribonuclease I [Escherichia coli 10.0869]
gi|425150596|ref|ZP_18550247.1| exodeoxyribonuclease I [Escherichia coli 88.0221]
gi|425212397|ref|ZP_18607833.1| exonuclease [Escherichia coli PA4]
gi|428953676|ref|ZP_19025500.1| exodeoxyribonuclease I [Escherichia coli 88.1042]
gi|428959603|ref|ZP_19030951.1| exodeoxyribonuclease I [Escherichia coli 89.0511]
gi|428978539|ref|ZP_19048391.1| exodeoxyribonuclease I [Escherichia coli 90.2281]
gi|428984371|ref|ZP_19053791.1| exodeoxyribonuclease I [Escherichia coli 93.0055]
gi|428990436|ref|ZP_19059453.1| exodeoxyribonuclease I [Escherichia coli 93.0056]
gi|428996232|ref|ZP_19064874.1| exodeoxyribonuclease I [Escherichia coli 94.0618]
gi|429008543|ref|ZP_19076112.1| exodeoxyribonuclease I [Escherichia coli 95.1288]
gi|429015067|ref|ZP_19082001.1| exodeoxyribonuclease I [Escherichia coli 95.0943]
gi|429020962|ref|ZP_19087510.1| exodeoxyribonuclease I [Escherichia coli 96.0428]
gi|429045286|ref|ZP_19110025.1| exodeoxyribonuclease I [Escherichia coli 96.0107]
gi|429049247|ref|ZP_19113889.1| exodeoxyribonuclease I [Escherichia coli 97.0003]
gi|429055901|ref|ZP_19120271.1| exodeoxyribonuclease I [Escherichia coli 97.1742]
gi|429060342|ref|ZP_19124450.1| exodeoxyribonuclease I [Escherichia coli 97.0007]
gi|429067711|ref|ZP_19131215.1| exodeoxyribonuclease I [Escherichia coli 99.0672]
gi|429826911|ref|ZP_19358003.1| exodeoxyribonuclease I [Escherichia coli 96.0109]
gi|429833216|ref|ZP_19363645.1| exodeoxyribonuclease I [Escherichia coli 97.0010]
gi|444958806|ref|ZP_21276686.1| exodeoxyribonuclease I [Escherichia coli 99.1753]
gi|444963979|ref|ZP_21281623.1| exodeoxyribonuclease I [Escherichia coli 99.1775]
gi|444986049|ref|ZP_21302846.1| exodeoxyribonuclease I [Escherichia coli PA11]
gi|445000906|ref|ZP_21317348.1| exodeoxyribonuclease I [Escherichia coli PA2]
gi|445017162|ref|ZP_21333194.1| exodeoxyribonuclease I [Escherichia coli PA8]
gi|445029342|ref|ZP_21345040.1| exodeoxyribonuclease I [Escherichia coli 99.1781]
gi|445033478|ref|ZP_21349078.1| exodeoxyribonuclease I [Escherichia coli 99.1762]
gi|445051224|ref|ZP_21366299.1| exodeoxyribonuclease I [Escherichia coli 95.0083]
gi|445055613|ref|ZP_21370541.1| exodeoxyribonuclease I [Escherichia coli 99.0670]
gi|13362281|dbj|BAB36236.1| exonuclease I [Escherichia coli O157:H7 str. Sakai]
gi|189365832|gb|EDU84248.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4501]
gi|217317285|gb|EEC25714.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. TW14588]
gi|226237418|dbj|BAH46940.1| exonuclease I [Escherichia coli O55:H7]
gi|290763121|gb|ADD57082.1| Exonuclease I [Escherichia coli O55:H7 str. CB9615]
gi|320646788|gb|EFX15665.1| exonuclease I [Escherichia coli O157:H- str. 493-89]
gi|320652067|gb|EFX20410.1| exonuclease I [Escherichia coli O157:H- str. H 2687]
gi|320657429|gb|EFX25227.1| exonuclease I [Escherichia coli O55:H7 str. 3256-97 TW 07815]
gi|320663245|gb|EFX30550.1| exonuclease I [Escherichia coli O55:H7 str. USDA 5905]
gi|320668145|gb|EFX35014.1| exonuclease I [Escherichia coli O157:H7 str. LSU-61]
gi|326338368|gb|EGD62196.1| Exodeoxyribonuclease I [Escherichia coli O157:H7 str. 1044]
gi|326347111|gb|EGD70844.1| Exodeoxyribonuclease I [Escherichia coli O157:H7 str. 1125]
gi|377984496|gb|EHV47727.1| exodeoxyribonuclease I [Escherichia coli DEC5E]
gi|386796620|gb|AFJ29654.1| exonuclease I [Escherichia coli Xuzhou21]
gi|408128240|gb|EKH58622.1| exonuclease [Escherichia coli PA4]
gi|408550684|gb|EKK28005.1| exodeoxyribonuclease I [Escherichia coli 5.2239]
gi|408551504|gb|EKK28777.1| exodeoxyribonuclease I [Escherichia coli 3.4870]
gi|408552094|gb|EKK29325.1| exonuclease [Escherichia coli 6.0172]
gi|408572180|gb|EKK48103.1| exodeoxyribonuclease I [Escherichia coli 8.0586]
gi|408581907|gb|EKK57196.1| exodeoxyribonuclease I [Escherichia coli 8.2524]
gi|408592432|gb|EKK66822.1| exodeoxyribonuclease I [Escherichia coli 10.0869]
gi|408597343|gb|EKK71402.1| exodeoxyribonuclease I [Escherichia coli 88.0221]
gi|408613196|gb|EKK86517.1| exodeoxyribonuclease I [Escherichia coli 10.0821]
gi|427205752|gb|EKV75988.1| exodeoxyribonuclease I [Escherichia coli 88.1042]
gi|427208402|gb|EKV78532.1| exodeoxyribonuclease I [Escherichia coli 89.0511]
gi|427224906|gb|EKV93579.1| exodeoxyribonuclease I [Escherichia coli 90.2281]
gi|427243058|gb|EKW10450.1| exodeoxyribonuclease I [Escherichia coli 93.0056]
gi|427243498|gb|EKW10872.1| exodeoxyribonuclease I [Escherichia coli 93.0055]
gi|427246842|gb|EKW14009.1| exodeoxyribonuclease I [Escherichia coli 94.0618]
gi|427262644|gb|EKW28507.1| exodeoxyribonuclease I [Escherichia coli 95.0943]
gi|427265576|gb|EKW31124.1| exodeoxyribonuclease I [Escherichia coli 95.1288]
gi|427277457|gb|EKW41991.1| exodeoxyribonuclease I [Escherichia coli 96.0428]
gi|427300355|gb|EKW63304.1| exodeoxyribonuclease I [Escherichia coli 96.0107]
gi|427303697|gb|EKW66405.1| exodeoxyribonuclease I [Escherichia coli 97.0003]
gi|427314464|gb|EKW76513.1| exodeoxyribonuclease I [Escherichia coli 97.1742]
gi|427320350|gb|EKW82118.1| exodeoxyribonuclease I [Escherichia coli 97.0007]
gi|427320648|gb|EKW82395.1| exodeoxyribonuclease I [Escherichia coli 99.0672]
gi|429254501|gb|EKY38913.1| exodeoxyribonuclease I [Escherichia coli 96.0109]
gi|429256247|gb|EKY40454.1| exodeoxyribonuclease I [Escherichia coli 97.0010]
gi|444574199|gb|ELV50520.1| exodeoxyribonuclease I [Escherichia coli 99.1753]
gi|444578630|gb|ELV54679.1| exodeoxyribonuclease I [Escherichia coli 99.1775]
gi|444594347|gb|ELV69531.1| exodeoxyribonuclease I [Escherichia coli PA11]
gi|444620023|gb|ELV94040.1| exodeoxyribonuclease I [Escherichia coli PA2]
gi|444635066|gb|ELW08506.1| exodeoxyribonuclease I [Escherichia coli PA8]
gi|444642756|gb|ELW15930.1| exodeoxyribonuclease I [Escherichia coli 99.1781]
gi|444650959|gb|ELW23770.1| exodeoxyribonuclease I [Escherichia coli 99.1762]
gi|444665705|gb|ELW37809.1| exodeoxyribonuclease I [Escherichia coli 95.0083]
gi|444673323|gb|ELW44967.1| exodeoxyribonuclease I [Escherichia coli 99.0670]
Length = 475
Score = 325 bits (833), Expect = 1e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|432381753|ref|ZP_19624697.1| exodeoxyribonuclease I [Escherichia coli KTE15]
gi|432611824|ref|ZP_19847986.1| exodeoxyribonuclease I [Escherichia coli KTE72]
gi|432646586|ref|ZP_19882376.1| exodeoxyribonuclease I [Escherichia coli KTE86]
gi|432656167|ref|ZP_19891872.1| exodeoxyribonuclease I [Escherichia coli KTE93]
gi|432938366|ref|ZP_20136644.1| exodeoxyribonuclease I [Escherichia coli KTE183]
gi|432985772|ref|ZP_20174496.1| exodeoxyribonuclease I [Escherichia coli KTE215]
gi|433101561|ref|ZP_20287647.1| exodeoxyribonuclease I [Escherichia coli KTE145]
gi|433188798|ref|ZP_20372896.1| exodeoxyribonuclease I [Escherichia coli KTE88]
gi|430907952|gb|ELC29447.1| exodeoxyribonuclease I [Escherichia coli KTE15]
gi|431147998|gb|ELE49289.1| exodeoxyribonuclease I [Escherichia coli KTE72]
gi|431180623|gb|ELE80510.1| exodeoxyribonuclease I [Escherichia coli KTE86]
gi|431191495|gb|ELE90878.1| exodeoxyribonuclease I [Escherichia coli KTE93]
gi|431463101|gb|ELH43294.1| exodeoxyribonuclease I [Escherichia coli KTE183]
gi|431501209|gb|ELH80195.1| exodeoxyribonuclease I [Escherichia coli KTE215]
gi|431619155|gb|ELI88079.1| exodeoxyribonuclease I [Escherichia coli KTE145]
gi|431705504|gb|ELJ70094.1| exodeoxyribonuclease I [Escherichia coli KTE88]
Length = 475
Score = 325 bits (832), Expect = 1e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|421775646|ref|ZP_16212254.1| exonuclease [Escherichia coli AD30]
gi|422820297|ref|ZP_16868505.1| exodeoxyribonuclease I [Escherichia coli M919]
gi|432534286|ref|ZP_19771262.1| exodeoxyribonuclease I [Escherichia coli KTE234]
gi|432564230|ref|ZP_19800817.1| exodeoxyribonuclease I [Escherichia coli KTE51]
gi|432850971|ref|ZP_20081666.1| exodeoxyribonuclease I [Escherichia coli KTE144]
gi|385536154|gb|EIF83062.1| exodeoxyribonuclease I [Escherichia coli M919]
gi|408459115|gb|EKJ82898.1| exonuclease [Escherichia coli AD30]
gi|431060513|gb|ELD69839.1| exodeoxyribonuclease I [Escherichia coli KTE234]
gi|431093979|gb|ELD99630.1| exodeoxyribonuclease I [Escherichia coli KTE51]
gi|431400293|gb|ELG83675.1| exodeoxyribonuclease I [Escherichia coli KTE144]
Length = 475
Score = 325 bits (832), Expect = 1e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|422786596|ref|ZP_16839335.1| exonuclease [Escherichia coli H489]
gi|323961779|gb|EGB57380.1| exonuclease [Escherichia coli H489]
Length = 474
Score = 325 bits (832), Expect = 1e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 361 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 420
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 421 AEQQRWLEHRRQVF 434
>gi|453064009|gb|EMF04983.1| exonuclease I [Serratia marcescens VGH107]
Length = 475
Score = 325 bits (832), Expect = 1e-85, Method: Composition-based stats.
Identities = 167/479 (34%), Positives = 268/479 (55%), Gaps = 21/479 (4%)
Query: 309 GNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLI 368
+TF +DYETFG + DRP QFA +RTD+ N I+ P+++YC PA D+LP+P A +I
Sbjct: 5 ATATFYIHDYETFGKSPSLDRPAQFAGVRTDMDFNIIEEPLVIYCAPADDYLPEPEAVMI 64
Query: 369 TKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYER 428
T ITPQ G+ E +F I + F GT +GYN I FDDE++R +F+RN +PY
Sbjct: 65 TGITPQVARAKGVNEAEFTRQIHQAFSVAGTCILGYNNIRFDDEVSRNIFYRNFYDPYAY 124
Query: 429 EWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSD 488
W+N SRWDL++V++A Y L P GI WP +G PSF+LEHL+ N + H +AHDA+SD
Sbjct: 125 SWQNGNSRWDLLDVMRACYALRPDGIVWPENEDGFPSFRLEHLTRANGVEHTQAHDAMSD 184
Query: 489 VRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLM 548
V AT+ +A+L++ PRLF+F+L R K + A I P +++ MF + S +
Sbjct: 185 VYATIAMAKLVKQAQPRLFDFLLQHRNKHKLNALIDVAEMTPLVHVSGMFGAARGNTSWV 244
Query: 549 WPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNR 605
P+ HP NKN +I +L D L ++R+ L +++ D +PI ++H+N+
Sbjct: 245 SPLAWHPENKNAVIMCDLAGDMTPLLTLSAEQLRERLYTRRDDLAPDQAPVPIKLVHINK 304
Query: 606 SPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSD 661
P++ +L N R D +N++ + + + +K+ + S+
Sbjct: 305 CPVLAPAKTLLPENAE-RLGIDRQACLQNLQL---LKQHPEVREKVVALFAEAEPFKGSE 360
Query: 662 LELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
++D LY+ F S D + I++ P+ L ++ F + +++EL+F +RARN+ T
Sbjct: 361 ---DVDARLYDGFFSDADKAAMRIIQQTKPQNLPALDLAFSDGRMKELLFRFRARNYPNT 417
Query: 722 LSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESL--LKKANEHDTKILNALLMYGK 778
L E +RW ++R ++ + + L++ESL L + ++ T +L AL YGK
Sbjct: 418 LDDAEQRRWLQHRQEALSAER-----VQSYLLQLESLYNLHEGDKEKTALLKALFDYGK 471
>gi|432518089|ref|ZP_19755279.1| exodeoxyribonuclease I [Escherichia coli KTE228]
gi|432631762|ref|ZP_19867690.1| exodeoxyribonuclease I [Escherichia coli KTE80]
gi|432770982|ref|ZP_20005323.1| exodeoxyribonuclease I [Escherichia coli KTE50]
gi|433159042|ref|ZP_20343884.1| exodeoxyribonuclease I [Escherichia coli KTE177]
gi|431051280|gb|ELD60952.1| exodeoxyribonuclease I [Escherichia coli KTE228]
gi|431170623|gb|ELE70813.1| exodeoxyribonuclease I [Escherichia coli KTE80]
gi|431315221|gb|ELG03146.1| exodeoxyribonuclease I [Escherichia coli KTE50]
gi|431678415|gb|ELJ44413.1| exodeoxyribonuclease I [Escherichia coli KTE177]
Length = 475
Score = 325 bits (832), Expect = 1e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWSGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|395794882|ref|ZP_10474197.1| exonuclease I [Pseudomonas sp. Ag1]
gi|421141170|ref|ZP_15601162.1| exonuclease I [Pseudomonas fluorescens BBc6R8]
gi|395340931|gb|EJF72757.1| exonuclease I [Pseudomonas sp. Ag1]
gi|404507684|gb|EKA21662.1| exonuclease I [Pseudomonas fluorescens BBc6R8]
Length = 475
Score = 325 bits (832), Expect = 1e-85, Method: Composition-based stats.
Identities = 163/428 (38%), Positives = 256/428 (59%), Gaps = 13/428 (3%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
+T WYDYET G+N R DRP Q A IRTD+ LN + P+ LYC P+ D LP P AC IT
Sbjct: 2 TTIFWYDYETTGINPRTDRPLQVAGIRTDLELNEVGPPVNLYCHPSDDILPHPAACAITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPGVLAEKGLAEADFMTRVHAELATPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+V++ Y L P GI WP + +G+ + KLE L+ N + H +AHDALSDVR
Sbjct: 122 QGGNSRWDLIDVVRTAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAHDALSDVR 180
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARLIR P+L++++ LR K+ V+ ++ + +P +I+ FS++ Y+ ++ P
Sbjct: 181 ATIALARLIREKQPKLYDWLFQLRSKQRVMDQV--RLLQPMVHISGRFSAERHYLGVVLP 238
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP N+N LI +L DP+ L D + +R L +++ E +P+ ++H+NR P
Sbjct: 239 LAWHPRNRNALIVCDLGLDPQGLLDEDADTLRRRLYTRRDELAEGELPVPLKLLHINRCP 298
Query: 608 IVISNLKVLSSNLMFRYKFDLN-CAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELN 665
V++ L VL R + D++ C + ++ + + +W+ K+ Y + +
Sbjct: 299 -VVAPLSVLRPQDRERLQLDMDECDARALRLSDA----QELWRDKLAAIYAEEDFAPSAD 353
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY+ FI +D +R P +L+ + F++++L EL+F YRARNF +TL+ +
Sbjct: 354 PEQQLYDGFIGDRDRRLCEQVRVAEPAQLARQQWPFDDERLPELLFRYRARNFPDTLNSE 413
Query: 726 ELKRWKKY 733
E +RW+ +
Sbjct: 414 EQQRWRVF 421
>gi|432358354|ref|ZP_19601580.1| exodeoxyribonuclease I [Escherichia coli KTE4]
gi|432392524|ref|ZP_19635355.1| exodeoxyribonuclease I [Escherichia coli KTE21]
gi|430877009|gb|ELC00465.1| exodeoxyribonuclease I [Escherichia coli KTE4]
gi|430918286|gb|ELC39316.1| exodeoxyribonuclease I [Escherichia coli KTE21]
Length = 475
Score = 325 bits (832), Expect = 1e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|89330232|emb|CAJ84173.1| exodeoxyribonuclease I [Escherichia coli K-12]
Length = 467
Score = 325 bits (832), Expect = 1e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|433130572|ref|ZP_20316012.1| exodeoxyribonuclease I [Escherichia coli KTE163]
gi|431646352|gb|ELJ13849.1| exodeoxyribonuclease I [Escherichia coli KTE163]
Length = 475
Score = 325 bits (832), Expect = 1e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVHFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|108812583|ref|YP_648350.1| exonuclease I [Yersinia pestis Nepal516]
gi|229902976|ref|ZP_04518092.1| exonuclease I [Yersinia pestis Nepal516]
gi|108776231|gb|ABG18750.1| Exodeoxyribonuclease I subunit C [Yersinia pestis Nepal516]
gi|229679886|gb|EEO75986.1| exonuclease I [Yersinia pestis Nepal516]
Length = 476
Score = 325 bits (832), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 168/477 (35%), Positives = 267/477 (55%), Gaps = 15/477 (3%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
N TF +DYETFG DRP QFA +RTD+ N ++ P+++YCKPA D+LP P A +
Sbjct: 5 NKQPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVM 64
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
IT ITPQ L NG+ E +F+ I + F PGT +GYN I FDDE++R +F+RN +PY
Sbjct: 65 ITGITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYA 124
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
W+ SRWDL++V++A Y L P GI WP ++G PSFKLEHL+ N + H +AHDA+S
Sbjct: 125 YSWQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMS 184
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ +A+L++ PRLF+++ R K + A I P +++ MF + S
Sbjct: 185 DVYATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSW 244
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
+ P+ HP NKN +I +L D L D + +R+ L +++ + IPI ++H+N
Sbjct: 245 VAPLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHIN 304
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF-LDYKINNSDLE 663
+ P++ +L N R D +N++ + N + +K+ L + +
Sbjct: 305 KCPVLAPAKTLLPEN-ADRLGIDRQRCLQNLQL---LRQNPQVREKVVALFAQAEPFAVT 360
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
++D +LYN F S D + I++ + L ++ F++ +LE L+F +RARN+ TL+
Sbjct: 361 DDVDTQLYNGFFSDADRATIKIIQQTESQNLPALDLTFQDPRLEALLFRFRARNYPNTLN 420
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK--ILNALLMYGK 778
E +RW ++R ++ + + L++E + + K +L AL Y K
Sbjct: 421 DSEQQRWLQHRREALSPER-----VQDYVLQLEQFYNQYEDDKEKLTLLKALFEYAK 472
>gi|45441270|ref|NP_992809.1| exonuclease I [Yersinia pestis biovar Microtus str. 91001]
gi|108806850|ref|YP_650766.1| exonuclease I [Yersinia pestis Antiqua]
gi|149366477|ref|ZP_01888511.1| exodeoxyribonuclease I [Yersinia pestis CA88-4125]
gi|161484780|ref|NP_669913.2| exonuclease I [Yersinia pestis KIM10+]
gi|165924676|ref|ZP_02220508.1| exodeoxyribonuclease I [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165939554|ref|ZP_02228099.1| exodeoxyribonuclease I [Yersinia pestis biovar Orientalis str.
IP275]
gi|167400240|ref|ZP_02305753.1| exodeoxyribonuclease I [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167421764|ref|ZP_02313517.1| exodeoxyribonuclease I [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167470369|ref|ZP_02335073.1| exodeoxyribonuclease I [Yersinia pestis FV-1]
gi|218928697|ref|YP_002346572.1| exonuclease I [Yersinia pestis CO92]
gi|229841541|ref|ZP_04461700.1| exonuclease I [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229843652|ref|ZP_04463795.1| exonuclease I [Yersinia pestis biovar Orientalis str. India 195]
gi|229894245|ref|ZP_04509428.1| exonuclease I [Yersinia pestis Pestoides A]
gi|384140557|ref|YP_005523259.1| exonuclease I [Yersinia pestis A1122]
gi|384415069|ref|YP_005624431.1| exonuclease I [Yersinia pestis biovar Medievalis str. Harbin 35]
gi|420546300|ref|ZP_15044304.1| exodeoxyribonuclease I [Yersinia pestis PY-01]
gi|420551616|ref|ZP_15049059.1| exodeoxyribonuclease I [Yersinia pestis PY-02]
gi|420557164|ref|ZP_15053952.1| exodeoxyribonuclease I [Yersinia pestis PY-03]
gi|420562708|ref|ZP_15058833.1| exodeoxyribonuclease I [Yersinia pestis PY-04]
gi|420567719|ref|ZP_15063373.1| exodeoxyribonuclease I [Yersinia pestis PY-05]
gi|420573425|ref|ZP_15068545.1| exodeoxyribonuclease I [Yersinia pestis PY-06]
gi|420578694|ref|ZP_15073322.1| exodeoxyribonuclease I [Yersinia pestis PY-07]
gi|420584068|ref|ZP_15078203.1| exodeoxyribonuclease I [Yersinia pestis PY-08]
gi|420589225|ref|ZP_15082848.1| exodeoxyribonuclease I [Yersinia pestis PY-09]
gi|420594545|ref|ZP_15087637.1| exodeoxyribonuclease I [Yersinia pestis PY-10]
gi|420600232|ref|ZP_15092718.1| exodeoxyribonuclease I [Yersinia pestis PY-11]
gi|420605692|ref|ZP_15097608.1| exodeoxyribonuclease I [Yersinia pestis PY-12]
gi|420611046|ref|ZP_15102444.1| exodeoxyribonuclease I [Yersinia pestis PY-13]
gi|420616373|ref|ZP_15107144.1| exonuclease family protein [Yersinia pestis PY-14]
gi|420621754|ref|ZP_15111911.1| exodeoxyribonuclease I [Yersinia pestis PY-15]
gi|420626789|ref|ZP_15116479.1| exodeoxyribonuclease I [Yersinia pestis PY-16]
gi|420632001|ref|ZP_15121177.1| exodeoxyribonuclease I [Yersinia pestis PY-19]
gi|420637110|ref|ZP_15125759.1| exodeoxyribonuclease I [Yersinia pestis PY-25]
gi|420642656|ref|ZP_15130782.1| exodeoxyribonuclease I [Yersinia pestis PY-29]
gi|420647845|ref|ZP_15135513.1| exodeoxyribonuclease I [Yersinia pestis PY-32]
gi|420653476|ref|ZP_15140570.1| exodeoxyribonuclease I [Yersinia pestis PY-34]
gi|420658997|ref|ZP_15145536.1| exodeoxyribonuclease I [Yersinia pestis PY-36]
gi|420664308|ref|ZP_15150284.1| exodeoxyribonuclease I [Yersinia pestis PY-42]
gi|420669252|ref|ZP_15154774.1| exonuclease family protein [Yersinia pestis PY-45]
gi|420674573|ref|ZP_15159619.1| exodeoxyribonuclease I [Yersinia pestis PY-46]
gi|420680138|ref|ZP_15164654.1| exodeoxyribonuclease I [Yersinia pestis PY-47]
gi|420685405|ref|ZP_15169370.1| exodeoxyribonuclease I [Yersinia pestis PY-48]
gi|420690587|ref|ZP_15173949.1| exodeoxyribonuclease I [Yersinia pestis PY-52]
gi|420696391|ref|ZP_15179035.1| exodeoxyribonuclease I [Yersinia pestis PY-53]
gi|420701864|ref|ZP_15183643.1| exonuclease family protein [Yersinia pestis PY-54]
gi|420707722|ref|ZP_15188492.1| exodeoxyribonuclease I [Yersinia pestis PY-55]
gi|420713086|ref|ZP_15193298.1| exodeoxyribonuclease I [Yersinia pestis PY-56]
gi|420718508|ref|ZP_15198036.1| exodeoxyribonuclease I [Yersinia pestis PY-58]
gi|420724072|ref|ZP_15202844.1| exodeoxyribonuclease I [Yersinia pestis PY-59]
gi|420729676|ref|ZP_15207857.1| exodeoxyribonuclease I [Yersinia pestis PY-60]
gi|420734726|ref|ZP_15212420.1| exodeoxyribonuclease I [Yersinia pestis PY-61]
gi|420740194|ref|ZP_15217343.1| exodeoxyribonuclease I [Yersinia pestis PY-63]
gi|420745652|ref|ZP_15222091.1| exodeoxyribonuclease I [Yersinia pestis PY-64]
gi|420751333|ref|ZP_15227004.1| exodeoxyribonuclease I [Yersinia pestis PY-65]
gi|420756722|ref|ZP_15231600.1| exodeoxyribonuclease I [Yersinia pestis PY-66]
gi|420762458|ref|ZP_15236355.1| exodeoxyribonuclease I [Yersinia pestis PY-71]
gi|420767704|ref|ZP_15241086.1| exodeoxyribonuclease I [Yersinia pestis PY-72]
gi|420772685|ref|ZP_15245565.1| exodeoxyribonuclease I [Yersinia pestis PY-76]
gi|420778126|ref|ZP_15250407.1| exodeoxyribonuclease I [Yersinia pestis PY-88]
gi|420783683|ref|ZP_15255272.1| exodeoxyribonuclease I [Yersinia pestis PY-89]
gi|420788977|ref|ZP_15259960.1| exonuclease family protein [Yersinia pestis PY-90]
gi|420794451|ref|ZP_15264897.1| exodeoxyribonuclease I [Yersinia pestis PY-91]
gi|420799565|ref|ZP_15269496.1| exodeoxyribonuclease I [Yersinia pestis PY-92]
gi|420804917|ref|ZP_15274317.1| exodeoxyribonuclease I [Yersinia pestis PY-93]
gi|420810197|ref|ZP_15279089.1| exonuclease family protein [Yersinia pestis PY-94]
gi|420815868|ref|ZP_15284183.1| exodeoxyribonuclease I [Yersinia pestis PY-95]
gi|420821064|ref|ZP_15288873.1| exodeoxyribonuclease I [Yersinia pestis PY-96]
gi|420826153|ref|ZP_15293430.1| exodeoxyribonuclease I [Yersinia pestis PY-98]
gi|420831904|ref|ZP_15298635.1| exodeoxyribonuclease I [Yersinia pestis PY-99]
gi|420836747|ref|ZP_15302997.1| exodeoxyribonuclease I [Yersinia pestis PY-100]
gi|420841906|ref|ZP_15307672.1| exodeoxyribonuclease I [Yersinia pestis PY-101]
gi|420847543|ref|ZP_15312754.1| exodeoxyribonuclease I [Yersinia pestis PY-102]
gi|420852982|ref|ZP_15317503.1| exodeoxyribonuclease I [Yersinia pestis PY-103]
gi|420858464|ref|ZP_15322200.1| exodeoxyribonuclease I [Yersinia pestis PY-113]
gi|421763022|ref|ZP_16199819.1| exonuclease I [Yersinia pestis INS]
gi|45436130|gb|AAS61686.1| exodeoxyribonuclease I [Yersinia pestis biovar Microtus str. 91001]
gi|108778763|gb|ABG12821.1| Exodeoxyribonuclease I subunit C [Yersinia pestis Antiqua]
gi|115347308|emb|CAL20203.1| exodeoxyribonuclease I [Yersinia pestis CO92]
gi|149290851|gb|EDM40926.1| exodeoxyribonuclease I [Yersinia pestis CA88-4125]
gi|165912470|gb|EDR31102.1| exodeoxyribonuclease I [Yersinia pestis biovar Orientalis str.
IP275]
gi|165923736|gb|EDR40868.1| exodeoxyribonuclease I [Yersinia pestis biovar Orientalis str.
F1991016]
gi|166960249|gb|EDR56270.1| exodeoxyribonuclease I [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167050189|gb|EDR61597.1| exodeoxyribonuclease I [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|229689260|gb|EEO81323.1| exonuclease I [Yersinia pestis biovar Orientalis str. India 195]
gi|229697907|gb|EEO87954.1| exonuclease I [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229703643|gb|EEO90659.1| exonuclease I [Yersinia pestis Pestoides A]
gi|320015573|gb|ADV99144.1| exonuclease I [Yersinia pestis biovar Medievalis str. Harbin 35]
gi|342855686|gb|AEL74239.1| exonuclease I [Yersinia pestis A1122]
gi|391428254|gb|EIQ90254.1| exodeoxyribonuclease I [Yersinia pestis PY-01]
gi|391429677|gb|EIQ91502.1| exodeoxyribonuclease I [Yersinia pestis PY-02]
gi|391431036|gb|EIQ92664.1| exodeoxyribonuclease I [Yersinia pestis PY-03]
gi|391443880|gb|EIR04157.1| exodeoxyribonuclease I [Yersinia pestis PY-04]
gi|391445146|gb|EIR05303.1| exodeoxyribonuclease I [Yersinia pestis PY-05]
gi|391448130|gb|EIR07974.1| exodeoxyribonuclease I [Yersinia pestis PY-06]
gi|391460638|gb|EIR19321.1| exodeoxyribonuclease I [Yersinia pestis PY-07]
gi|391461641|gb|EIR20234.1| exodeoxyribonuclease I [Yersinia pestis PY-08]
gi|391463743|gb|EIR22114.1| exodeoxyribonuclease I [Yersinia pestis PY-09]
gi|391476955|gb|EIR34032.1| exodeoxyribonuclease I [Yersinia pestis PY-10]
gi|391478425|gb|EIR35345.1| exodeoxyribonuclease I [Yersinia pestis PY-11]
gi|391478521|gb|EIR35429.1| exodeoxyribonuclease I [Yersinia pestis PY-12]
gi|391492543|gb|EIR47992.1| exodeoxyribonuclease I [Yersinia pestis PY-13]
gi|391493510|gb|EIR48854.1| exodeoxyribonuclease I [Yersinia pestis PY-15]
gi|391495782|gb|EIR50826.1| exonuclease family protein [Yersinia pestis PY-14]
gi|391508568|gb|EIR62290.1| exodeoxyribonuclease I [Yersinia pestis PY-16]
gi|391508577|gb|EIR62298.1| exodeoxyribonuclease I [Yersinia pestis PY-19]
gi|391513362|gb|EIR66583.1| exodeoxyribonuclease I [Yersinia pestis PY-25]
gi|391523931|gb|EIR76206.1| exodeoxyribonuclease I [Yersinia pestis PY-29]
gi|391526494|gb|EIR78512.1| exodeoxyribonuclease I [Yersinia pestis PY-34]
gi|391527389|gb|EIR79308.1| exodeoxyribonuclease I [Yersinia pestis PY-32]
gi|391539816|gb|EIR90506.1| exodeoxyribonuclease I [Yersinia pestis PY-36]
gi|391542203|gb|EIR92682.1| exodeoxyribonuclease I [Yersinia pestis PY-42]
gi|391543466|gb|EIR93790.1| exonuclease family protein [Yersinia pestis PY-45]
gi|391557431|gb|EIS06425.1| exodeoxyribonuclease I [Yersinia pestis PY-46]
gi|391557795|gb|EIS06749.1| exodeoxyribonuclease I [Yersinia pestis PY-47]
gi|391559176|gb|EIS07983.1| exodeoxyribonuclease I [Yersinia pestis PY-48]
gi|391572613|gb|EIS19817.1| exodeoxyribonuclease I [Yersinia pestis PY-52]
gi|391573120|gb|EIS20237.1| exodeoxyribonuclease I [Yersinia pestis PY-53]
gi|391583233|gb|EIS28911.1| exonuclease family protein [Yersinia pestis PY-54]
gi|391585024|gb|EIS30473.1| exodeoxyribonuclease I [Yersinia pestis PY-55]
gi|391588308|gb|EIS33360.1| exodeoxyribonuclease I [Yersinia pestis PY-56]
gi|391601442|gb|EIS44868.1| exodeoxyribonuclease I [Yersinia pestis PY-58]
gi|391601834|gb|EIS45204.1| exodeoxyribonuclease I [Yersinia pestis PY-60]
gi|391603584|gb|EIS46750.1| exodeoxyribonuclease I [Yersinia pestis PY-59]
gi|391616246|gb|EIS57925.1| exodeoxyribonuclease I [Yersinia pestis PY-61]
gi|391617000|gb|EIS58591.1| exodeoxyribonuclease I [Yersinia pestis PY-63]
gi|391622971|gb|EIS63834.1| exodeoxyribonuclease I [Yersinia pestis PY-64]
gi|391628193|gb|EIS68301.1| exodeoxyribonuclease I [Yersinia pestis PY-65]
gi|391639436|gb|EIS78117.1| exodeoxyribonuclease I [Yersinia pestis PY-71]
gi|391640001|gb|EIS78605.1| exodeoxyribonuclease I [Yersinia pestis PY-66]
gi|391641668|gb|EIS80034.1| exodeoxyribonuclease I [Yersinia pestis PY-72]
gi|391651517|gb|EIS88679.1| exodeoxyribonuclease I [Yersinia pestis PY-76]
gi|391656770|gb|EIS93354.1| exodeoxyribonuclease I [Yersinia pestis PY-88]
gi|391661401|gb|EIS97449.1| exodeoxyribonuclease I [Yersinia pestis PY-89]
gi|391664640|gb|EIT00335.1| exonuclease family protein [Yersinia pestis PY-90]
gi|391671396|gb|EIT06344.1| exodeoxyribonuclease I [Yersinia pestis PY-91]
gi|391682444|gb|EIT16324.1| exodeoxyribonuclease I [Yersinia pestis PY-93]
gi|391683962|gb|EIT17690.1| exodeoxyribonuclease I [Yersinia pestis PY-92]
gi|391684625|gb|EIT18270.1| exonuclease family protein [Yersinia pestis PY-94]
gi|391696281|gb|EIT28780.1| exodeoxyribonuclease I [Yersinia pestis PY-95]
gi|391699673|gb|EIT31841.1| exodeoxyribonuclease I [Yersinia pestis PY-96]
gi|391701047|gb|EIT33087.1| exodeoxyribonuclease I [Yersinia pestis PY-98]
gi|391709925|gb|EIT41049.1| exodeoxyribonuclease I [Yersinia pestis PY-99]
gi|391717106|gb|EIT47503.1| exodeoxyribonuclease I [Yersinia pestis PY-100]
gi|391717620|gb|EIT47952.1| exodeoxyribonuclease I [Yersinia pestis PY-101]
gi|391728357|gb|EIT57477.1| exodeoxyribonuclease I [Yersinia pestis PY-102]
gi|391731370|gb|EIT60086.1| exodeoxyribonuclease I [Yersinia pestis PY-103]
gi|391735847|gb|EIT63944.1| exodeoxyribonuclease I [Yersinia pestis PY-113]
gi|411177228|gb|EKS47243.1| exonuclease I [Yersinia pestis INS]
Length = 476
Score = 325 bits (832), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 169/477 (35%), Positives = 266/477 (55%), Gaps = 15/477 (3%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
N TF +DYETFG DRP QFA +RTD+ N ++ P+++YCKPA D+LP P A +
Sbjct: 5 NKQPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVM 64
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
IT ITPQ L NG+ E +F+ I + F PGT +GYN I FDDE++R +F+RN +PY
Sbjct: 65 ITGITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYA 124
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
W+ SRWDL++V++A Y L P GI WP ++G PSFKLEHL+ N + H +AHDA+S
Sbjct: 125 YSWQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMS 184
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ +A+L++ PRLF+++ R K + A I P +++ MF + S
Sbjct: 185 DVYATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSW 244
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
+ P+ HP NKN +I +L D L D + +R+ L +++ + IPI ++H+N
Sbjct: 245 VAPLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHIN 304
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF-LDYKINNSDLE 663
+ P++ +L N R D +N++ + N + +K+ L + +
Sbjct: 305 KCPVLAPAKTLLPEN-ADRLGIDRQRCLQNLQL---LRQNPQVREKVVALFAQAEPFAVT 360
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
++D +LYN F S D + I++ + L ++ F++ +LE L+F +RARN+ TL+
Sbjct: 361 DDVDTQLYNGFFSDADRATIKIIQQTESQNLPALDLTFQDPRLEALLFRFRARNYPNTLN 420
Query: 724 YKELKRWKKYRISRFYNKKNNLY--NINMFYLEIESLLKKANEHDTKILNALLMYGK 778
E +RW ++R ++ Y + FY + E ++ +L AL Y K
Sbjct: 421 DSEQQRWLQHRREALSPERVQDYVLQLEQFYNQYED-----DKEKLALLKALFEYAK 472
>gi|420346320|ref|ZP_14847740.1| exodeoxyribonuclease I [Shigella boydii 965-58]
gi|391273992|gb|EIQ32808.1| exodeoxyribonuclease I [Shigella boydii 965-58]
Length = 475
Score = 325 bits (832), Expect = 2e-85, Method: Composition-based stats.
Identities = 166/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N++ + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLRI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|432602568|ref|ZP_19838812.1| exodeoxyribonuclease I [Escherichia coli KTE66]
gi|431141142|gb|ELE42907.1| exodeoxyribonuclease I [Escherichia coli KTE66]
Length = 475
Score = 325 bits (832), Expect = 2e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 251/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P ++YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVIYCKPADDYLPQPGAVLITS 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKMRQPRLFDYLFTHRNKHKLIALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLTQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|348029126|ref|YP_004871812.1| exodeoxyribonuclease I [Glaciecola nitratireducens FR1064]
gi|347946469|gb|AEP29819.1| exodeoxyribonuclease I [Glaciecola nitratireducens FR1064]
Length = 521
Score = 325 bits (832), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 183/477 (38%), Positives = 269/477 (56%), Gaps = 20/477 (4%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
T LW+DYET+G++ + D P QFAAIRTD+ LN I NP+ +C+ D++P P ACL+T I
Sbjct: 49 TLLWHDYETWGVDPKYDFPCQFAAIRTDLDLNIIGNPVSYFCQIPNDYIPHPIACLVTGI 108
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L +G E +FA I +I KP T VGYN+I FDDE+TRF+ +RN +PYEREWK
Sbjct: 109 TPQQSLRDGYIEAEFAEKIAQIMDKPDTCVVGYNSIRFDDEVTRFLRYRNFYDPYEREWK 168
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD+I++ +A Y L P GI WP +GKPSFKLE L+ N + H+ AHDA+SDV+A
Sbjct: 169 NGNSRWDIIDLARACYALRPEGIEWPIHEDGKPSFKLEELTAANGIDHESAHDAVSDVKA 228
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ A+L++ P+LF++ SLR K V+ I +PF +I+ M + S PI
Sbjct: 229 TIAFAQLMKAKQPKLFDYYFSLRNKNTVMQNIDVANQKPFLHISGMLPATQGCCSWFMPI 288
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDIP-------ISMIHLN 604
+HP NKN +I +L D D + ++ L K++ D+P I ++H+N
Sbjct: 289 AMHPSNKNAVICVDLASDLSSIESMDSDDLKALLYTKQD----DLPLGTKKPGIKLVHIN 344
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL 664
+SP V + K L+ R + KN I++ T IF + ++ E
Sbjct: 345 KSPFV-APAKTLTPEHAVRLNISRDDCLKNHAYIKRIIDITDKLSAIFEEDGRQHT--ET 401
Query: 665 NIDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
+ID LY F S D + +++ P++L+ N + E + YRARNF TL
Sbjct: 402 DIDASLYTRGFASAADKHWMTEVKACPPEQLTVWQDRAPNLQYAEQLMRYRARNFPHTLD 461
Query: 724 YKELKRWKKYRISRFY--NKKNNLYNINMFYLEIESLLKKANEHD--TKILNALLMY 776
EL +W+ +R +RF NKK L +I+ ++ L +K E K+L+ + +Y
Sbjct: 462 QSELDKWQAHRKARFTADNKKTCL-SISECQAQVAELAEKHAEDGKKMKLLSTITLY 517
>gi|117624215|ref|YP_853128.1| exonuclease I [Escherichia coli APEC O1]
gi|115513339|gb|ABJ01414.1| exonuclease I [Escherichia coli APEC O1]
Length = 491
Score = 325 bits (832), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 178/486 (36%), Positives = 276/486 (56%), Gaps = 22/486 (4%)
Query: 303 DILLHNG--NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFL 360
++++++G STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+L
Sbjct: 15 NLMMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYL 74
Query: 361 PDPRACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWR 420
P P A LIT ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+R
Sbjct: 75 PQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYR 134
Query: 421 NLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHK 480
N +PY W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H
Sbjct: 135 NFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHS 194
Query: 481 KAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSS 540
AHDA++DV AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF +
Sbjct: 195 NAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGA 254
Query: 541 KHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPI 598
S + P+ HP N+N +I +L D L D + +R+ L K ++ +P+
Sbjct: 255 WRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPV 314
Query: 599 SMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDY 655
++H+N+ P V++ L R + N+K + N + +K IF +
Sbjct: 315 KLVHINKCP-VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEA 370
Query: 656 K-INNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYR 714
+ SD N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YR
Sbjct: 371 EPFTPSD---NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYR 427
Query: 715 ARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI--LNA 772
ARNF TL Y E +RW ++R F + + + E++ L ++ + K+ L A
Sbjct: 428 ARNFPGTLDYAEQQRWLEHRRQVFTPEF-----LQGYADELQMLAQQYADDKEKVALLKA 482
Query: 773 LLMYGK 778
L Y K
Sbjct: 483 LWQYAK 488
>gi|432616967|ref|ZP_19853088.1| exodeoxyribonuclease I [Escherichia coli KTE75]
gi|431155207|gb|ELE55968.1| exodeoxyribonuclease I [Escherichia coli KTE75]
Length = 475
Score = 325 bits (832), Expect = 2e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSKFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|429093986|ref|ZP_19156547.1| Exodeoxyribonuclease I [Cronobacter dublinensis 1210]
gi|426741020|emb|CCJ82660.1| Exodeoxyribonuclease I [Cronobacter dublinensis 1210]
Length = 475
Score = 325 bits (832), Expect = 2e-85, Method: Composition-based stats.
Identities = 175/471 (37%), Positives = 260/471 (55%), Gaps = 12/471 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAA+RTD N I P + YCKPA D+LP P A LIT I
Sbjct: 9 TFLFHDYETFGKSPSLDRPAQFAALRTDENFNVIGEPEVFYCKPADDYLPQPEAVLITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L G E +FA I +F P T VGYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQVALARGENEAEFAGRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 HDNSRWDLLDVMRACYALRPEGIVWPENSDGLPSFRLEHLTVANGIEHANAHDAMADVHA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PR+F+++ + R K+ + I +P +++ MF + S + PI
Sbjct: 189 TIAMAQLVKTRQPRMFDYLYTYRSKQKLATLIDIVQMKPLVHVSGMFGAWRGNTSWIAPI 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R+ L K +D +P+ ++HLN+ P V
Sbjct: 249 AWHPDNRNAVIVVDLAGDISPLLELDADALRERLYTPKAVLGDDSAVPVKLVHLNKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDEE 669
++ L R D N+K + K + L + N+D +
Sbjct: 308 LAQANTLRPEDAERLGIDRQHCLNNLKVLRAAPQVRE--KLVALFAEAPPFPPTSNVDAQ 365
Query: 670 LYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKR 729
LY+ F S D + I+ P+ L ++ F +K++E+L+F YRARNF TLS E +R
Sbjct: 366 LYDGFFSDADRAAMRIVLQTPPQNLPALDITFVDKRIEKLLFNYRARNFPGTLSEPEQQR 425
Query: 730 WKKYRISRFYNKKNNLY--NINMFYLEIESLLKKANEHDTKILNALLMYGK 778
W +R F + Y + M Y + ES ++ T +L AL Y +
Sbjct: 426 WLNHRRDVFTPEFLQAYAQELEMLYNQYES-----DKEKTALLKALYQYAQ 471
>gi|365137516|ref|ZP_09344233.1| exodeoxyribonuclease I [Klebsiella sp. 4_1_44FAA]
gi|363656074|gb|EHL94848.1| exodeoxyribonuclease I [Klebsiella sp. 4_1_44FAA]
Length = 474
Score = 325 bits (832), Expect = 2e-85, Method: Composition-based stats.
Identities = 166/429 (38%), Positives = 245/429 (57%), Gaps = 7/429 (1%)
Query: 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKIT 372
FL++DYETFG + DRP QFAAIRTD LN I P + YCKPA D+LP P+A +IT IT
Sbjct: 10 FLFHDYETFGTSPSLDRPAQFAAIRTDAELNVIGEPEVFYCKPADDYLPQPQAVMITGIT 69
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
PQ L G E FA I +F P T VGYN + FDDE+TR +F+RN +PY W++
Sbjct: 70 PQEALAKGDNEATFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRAT 492
+ SRWDL++V++A Y L P GI WP + G PSF+LEHL+ N + H+ AHDA++DV AT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGIAWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVYAT 189
Query: 493 LGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPIC 552
+ +A+L++ PRLF+++ S R K+ + I P +P +++ MF + SL+ P+
Sbjct: 190 IAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAPLA 249
Query: 553 IHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIVI 610
HP N+N +I +L D L D + +R+ L + + PI ++HLN+ P V+
Sbjct: 250 WHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDLPAAPIKLVHLNKCP-VL 308
Query: 611 SNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL-ELNIDEE 669
+ L R + +N A + N + +K+ Y + N+D +
Sbjct: 309 AQANTLRPQDADRLGISIQRCLEN---AQLLRANPQVREKVVAVYAEAEPFVPSENVDAQ 365
Query: 670 LYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKR 729
LYN F S D + I+ P+ L ++ F ++++E L+F YRARNF TL E +R
Sbjct: 366 LYNGFFSDADRAAMKIVLETEPRNLPALDITFADQRIERLLFNYRARNFPGTLDEHEQQR 425
Query: 730 WKKYRISRF 738
W ++R F
Sbjct: 426 WLEHRRQVF 434
>gi|331668711|ref|ZP_08369559.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli TA271]
gi|450190178|ref|ZP_21890743.1| exonuclease I [Escherichia coli SEPT362]
gi|331063905|gb|EGI35816.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli TA271]
gi|449320823|gb|EMD10847.1| exonuclease I [Escherichia coli SEPT362]
Length = 474
Score = 325 bits (832), Expect = 2e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 248 LAWHPENRNAVIMVDLAGDISLLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 361 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 420
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 421 AEQQRWLEHRRQVF 434
>gi|422781101|ref|ZP_16833886.1| exonuclease [Escherichia coli TW10509]
gi|323977819|gb|EGB72905.1| exonuclease [Escherichia coli TW10509]
Length = 474
Score = 325 bits (832), Expect = 2e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPEAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 361 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 420
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 421 AEQQRWLEHRRQVF 434
>gi|307312423|ref|ZP_07592057.1| Exodeoxyribonuclease I [Escherichia coli W]
gi|378712573|ref|YP_005277466.1| Exodeoxyribonuclease I [Escherichia coli KO11FL]
gi|386609369|ref|YP_006124855.1| exonuclease I [Escherichia coli W]
gi|386701038|ref|YP_006164875.1| exonuclease I [Escherichia coli KO11FL]
gi|386709849|ref|YP_006173570.1| exonuclease I [Escherichia coli W]
gi|417220744|ref|ZP_12024184.1| exodeoxyribonuclease I [Escherichia coli 96.154]
gi|419950317|ref|ZP_14466533.1| exonuclease I [Escherichia coli CUMT8]
gi|306907594|gb|EFN38097.1| Exodeoxyribonuclease I [Escherichia coli W]
gi|315061286|gb|ADT75613.1| exonuclease I [Escherichia coli W]
gi|323378134|gb|ADX50402.1| Exodeoxyribonuclease I [Escherichia coli KO11FL]
gi|383392565|gb|AFH17523.1| exonuclease I [Escherichia coli KO11FL]
gi|383405541|gb|AFH11784.1| exonuclease I [Escherichia coli W]
gi|386200546|gb|EIH99536.1| exodeoxyribonuclease I [Escherichia coli 96.154]
gi|388417055|gb|EIL76921.1| exonuclease I [Escherichia coli CUMT8]
Length = 475
Score = 325 bits (832), Expect = 2e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISLLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|419289957|ref|ZP_13832050.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC11A]
gi|419295284|ref|ZP_13837330.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC11B]
gi|419869148|ref|ZP_14391363.1| exonuclease I [Escherichia coli O103:H2 str. CVM9450]
gi|420391736|ref|ZP_14890989.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli EPEC C342-62]
gi|378130365|gb|EHW91730.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC11A]
gi|378142371|gb|EHX03573.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC11B]
gi|388343039|gb|EIL09038.1| exonuclease I [Escherichia coli O103:H2 str. CVM9450]
gi|391312417|gb|EIQ70025.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli EPEC C342-62]
Length = 474
Score = 325 bits (832), Expect = 2e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 361 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 420
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 421 AEQQRWLEHRRQVF 434
>gi|193071491|ref|ZP_03052403.1| exodeoxyribonuclease I [Escherichia coli E110019]
gi|192955213|gb|EDV85704.1| exodeoxyribonuclease I [Escherichia coli E110019]
Length = 475
Score = 325 bits (832), Expect = 2e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|157161503|ref|YP_001458821.1| exonuclease I [Escherichia coli HS]
gi|419938664|ref|ZP_14455488.1| exonuclease I [Escherichia coli 75]
gi|432637258|ref|ZP_19873133.1| exodeoxyribonuclease I [Escherichia coli KTE81]
gi|432737531|ref|ZP_19972292.1| exodeoxyribonuclease I [Escherichia coli KTE42]
gi|157067183|gb|ABV06438.1| exodeoxyribonuclease I [Escherichia coli HS]
gi|388409774|gb|EIL70040.1| exonuclease I [Escherichia coli 75]
gi|431171793|gb|ELE71953.1| exodeoxyribonuclease I [Escherichia coli KTE81]
gi|431282894|gb|ELF73767.1| exodeoxyribonuclease I [Escherichia coli KTE42]
Length = 475
Score = 325 bits (832), Expect = 2e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|193062859|ref|ZP_03043952.1| exodeoxyribonuclease I [Escherichia coli E22]
gi|194428755|ref|ZP_03061291.1| exodeoxyribonuclease I [Escherichia coli B171]
gi|260844621|ref|YP_003222399.1| exonuclease I [Escherichia coli O103:H2 str. 12009]
gi|415797800|ref|ZP_11498205.1| exodeoxyribonuclease I [Escherichia coli E128010]
gi|417176569|ref|ZP_12006365.1| exodeoxyribonuclease I [Escherichia coli 3.2608]
gi|417182725|ref|ZP_12009282.1| exodeoxyribonuclease I [Escherichia coli 93.0624]
gi|417238027|ref|ZP_12035758.1| exodeoxyribonuclease I [Escherichia coli 9.0111]
gi|417249092|ref|ZP_12040877.1| exodeoxyribonuclease I [Escherichia coli 4.0967]
gi|417623908|ref|ZP_12274207.1| exodeoxyribonuclease I [Escherichia coli STEC_H.1.8]
gi|419300704|ref|ZP_13842703.1| exodeoxyribonuclease I [Escherichia coli DEC11C]
gi|419317131|ref|ZP_13858941.1| exodeoxyribonuclease I [Escherichia coli DEC12A]
gi|419329354|ref|ZP_13870960.1| exodeoxyribonuclease I [Escherichia coli DEC12C]
gi|192931502|gb|EDV84103.1| exodeoxyribonuclease I [Escherichia coli E22]
gi|194413202|gb|EDX29488.1| exodeoxyribonuclease I [Escherichia coli B171]
gi|257759768|dbj|BAI31265.1| exonuclease I [Escherichia coli O103:H2 str. 12009]
gi|323161928|gb|EFZ47802.1| exodeoxyribonuclease I [Escherichia coli E128010]
gi|345376869|gb|EGX08801.1| exodeoxyribonuclease I [Escherichia coli STEC_H.1.8]
gi|378150320|gb|EHX11435.1| exodeoxyribonuclease I [Escherichia coli DEC11C]
gi|378170394|gb|EHX31277.1| exodeoxyribonuclease I [Escherichia coli DEC12A]
gi|378170713|gb|EHX31591.1| exodeoxyribonuclease I [Escherichia coli DEC12C]
gi|386179261|gb|EIH56740.1| exodeoxyribonuclease I [Escherichia coli 3.2608]
gi|386184578|gb|EIH67317.1| exodeoxyribonuclease I [Escherichia coli 93.0624]
gi|386213805|gb|EII24230.1| exodeoxyribonuclease I [Escherichia coli 9.0111]
gi|386221075|gb|EII37538.1| exodeoxyribonuclease I [Escherichia coli 4.0967]
Length = 475
Score = 325 bits (832), Expect = 2e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|419977269|ref|ZP_14492627.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH1]
gi|419983018|ref|ZP_14498242.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH2]
gi|419988792|ref|ZP_14503850.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH4]
gi|419994593|ref|ZP_14509477.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH5]
gi|420000388|ref|ZP_14515112.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH6]
gi|420006128|ref|ZP_14520705.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH7]
gi|420011907|ref|ZP_14526319.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH8]
gi|420017749|ref|ZP_14531997.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH9]
gi|420023419|ref|ZP_14537533.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH10]
gi|420029187|ref|ZP_14543113.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH11]
gi|420034944|ref|ZP_14548692.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH12]
gi|420040653|ref|ZP_14554228.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH14]
gi|420046325|ref|ZP_14559746.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH16]
gi|420052122|ref|ZP_14565369.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH17]
gi|420057879|ref|ZP_14570979.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH18]
gi|420063517|ref|ZP_14576427.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH19]
gi|420069266|ref|ZP_14581998.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH20]
gi|420075084|ref|ZP_14587644.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH21]
gi|420080895|ref|ZP_14593284.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH22]
gi|420086659|ref|ZP_14598784.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH23]
gi|421912146|ref|ZP_16341888.1| Exodeoxyribonuclease I [Klebsiella pneumoniae subsp. pneumoniae
ST258-K26BO]
gi|421913886|ref|ZP_16343549.1| Exodeoxyribonuclease I [Klebsiella pneumoniae subsp. pneumoniae
ST258-K28BO]
gi|428151223|ref|ZP_18998964.1| Exodeoxyribonuclease I [Klebsiella pneumoniae subsp. pneumoniae
ST512-K30BO]
gi|428941917|ref|ZP_19014941.1| exonuclease I [Klebsiella pneumoniae VA360]
gi|397338649|gb|EJJ31982.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH1]
gi|397338786|gb|EJJ32093.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH2]
gi|397338972|gb|EJJ32255.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH4]
gi|397355886|gb|EJJ48801.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH5]
gi|397355957|gb|EJJ48855.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH6]
gi|397357406|gb|EJJ50165.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH7]
gi|397372782|gb|EJJ65255.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH9]
gi|397373756|gb|EJJ66146.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH8]
gi|397377539|gb|EJJ69769.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH10]
gi|397388713|gb|EJJ80678.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH11]
gi|397390965|gb|EJJ82858.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH12]
gi|397394901|gb|EJJ86618.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH14]
gi|397406295|gb|EJJ97723.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH17]
gi|397406309|gb|EJJ97734.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH16]
gi|397413743|gb|EJK04950.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH18]
gi|397422976|gb|EJK13922.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH20]
gi|397423490|gb|EJK14415.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH19]
gi|397429986|gb|EJK20688.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH21]
gi|397438841|gb|EJK29315.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH22]
gi|397444749|gb|EJK35015.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae KPNIH23]
gi|410113965|emb|CCM84513.1| Exodeoxyribonuclease I [Klebsiella pneumoniae subsp. pneumoniae
ST258-K26BO]
gi|410123811|emb|CCM86174.1| Exodeoxyribonuclease I [Klebsiella pneumoniae subsp. pneumoniae
ST258-K28BO]
gi|426299622|gb|EKV61949.1| exonuclease I [Klebsiella pneumoniae VA360]
gi|427538819|emb|CCM95102.1| Exodeoxyribonuclease I [Klebsiella pneumoniae subsp. pneumoniae
ST512-K30BO]
Length = 474
Score = 325 bits (832), Expect = 2e-85, Method: Composition-based stats.
Identities = 166/429 (38%), Positives = 245/429 (57%), Gaps = 7/429 (1%)
Query: 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKIT 372
FL++DYETFG + DRP QFAAIRTD LN I P + YCKPA D+LP P+A +IT IT
Sbjct: 10 FLFHDYETFGTSPSLDRPAQFAAIRTDAELNVIGEPEVFYCKPADDYLPQPQAVMITGIT 69
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
PQ L G E FA I +F P T VGYN + FDDE+TR +F+RN +PY W++
Sbjct: 70 PQEALAKGDNEAAFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRAT 492
+ SRWDL++V++A Y L P GI WP + G PSF+LEHL+ N + H+ AHDA++DV AT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGIAWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVYAT 189
Query: 493 LGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPIC 552
+ +A+L++ PRLF+++ S R K+ + I P +P +++ MF + SL+ P+
Sbjct: 190 IAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAPLA 249
Query: 553 IHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIVI 610
HP N+N +I +L D L D + +R+ L + + PI ++HLN+ P V+
Sbjct: 250 WHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDLPAAPIKLVHLNKCP-VL 308
Query: 611 SNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL-ELNIDEE 669
+ L R + +N A + N + +K+ Y + N+D +
Sbjct: 309 AQANTLRPQDADRLGISIQRCLEN---AQLLRANPQVREKVVAVYAEAEPFVPSENVDAQ 365
Query: 670 LYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKR 729
LYN F S D + I+ P+ L ++ F ++++E L+F YRARNF TL E +R
Sbjct: 366 LYNGFFSDADRAAMKIVLETEPRNLPALDITFADQRIERLLFNYRARNFPGTLDEHEQQR 425
Query: 730 WKKYRISRF 738
W ++R F
Sbjct: 426 WLEHRRQVF 434
>gi|432481343|ref|ZP_19723301.1| exodeoxyribonuclease I [Escherichia coli KTE210]
gi|433092407|ref|ZP_20278678.1| exodeoxyribonuclease I [Escherichia coli KTE138]
gi|431008000|gb|ELD22811.1| exodeoxyribonuclease I [Escherichia coli KTE210]
gi|431610415|gb|ELI79708.1| exodeoxyribonuclease I [Escherichia coli KTE138]
Length = 475
Score = 325 bits (832), Expect = 2e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 249/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF ++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|417602593|ref|ZP_12253163.1| exodeoxyribonuclease I [Escherichia coli STEC_94C]
gi|345350259|gb|EGW82534.1| exodeoxyribonuclease I [Escherichia coli STEC_94C]
Length = 475
Score = 325 bits (832), Expect = 2e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 249/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF ++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|419227201|ref|ZP_13770059.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC9A]
gi|419232988|ref|ZP_13775765.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC9B]
gi|419238263|ref|ZP_13780986.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC9C]
gi|419243731|ref|ZP_13786370.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC9D]
gi|419249558|ref|ZP_13792143.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC9E]
gi|419261567|ref|ZP_13803989.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC10B]
gi|419273069|ref|ZP_13815369.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC10D]
gi|419904468|ref|ZP_14423465.1| exonuclease I [Escherichia coli O26:H11 str. CVM9942]
gi|420114784|ref|ZP_14624405.1| exonuclease I [Escherichia coli O26:H11 str. CVM10021]
gi|378074714|gb|EHW36743.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC9A]
gi|378077515|gb|EHW39509.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC9B]
gi|378084465|gb|EHW46373.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC9C]
gi|378090809|gb|EHW52644.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC9D]
gi|378095604|gb|EHW57389.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC9E]
gi|378106616|gb|EHW68244.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC10B]
gi|378117010|gb|EHW78527.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC10D]
gi|388367505|gb|EIL31181.1| exonuclease I [Escherichia coli O26:H11 str. CVM9942]
gi|394408265|gb|EJE82953.1| exonuclease I [Escherichia coli O26:H11 str. CVM10021]
Length = 474
Score = 325 bits (832), Expect = 2e-85, Method: Composition-based stats.
Identities = 169/434 (38%), Positives = 253/434 (58%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 68 ITPQETRAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYK-INNSDLEL 664
V++ L R + N+K + N + +K IF++ + SD
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFVEAEPFTPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 361 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 420
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 421 AEQQRWLEHRRQVF 434
>gi|300816639|ref|ZP_07096860.1| exonuclease [Escherichia coli MS 107-1]
gi|415874828|ref|ZP_11541737.1| exodeoxyribonuclease I [Escherichia coli MS 79-10]
gi|432809673|ref|ZP_20043566.1| exodeoxyribonuclease I [Escherichia coli KTE101]
gi|432968110|ref|ZP_20157025.1| exodeoxyribonuclease I [Escherichia coli KTE203]
gi|300530869|gb|EFK51931.1| exonuclease [Escherichia coli MS 107-1]
gi|342929759|gb|EGU98481.1| exodeoxyribonuclease I [Escherichia coli MS 79-10]
gi|431362441|gb|ELG49019.1| exodeoxyribonuclease I [Escherichia coli KTE101]
gi|431471227|gb|ELH51120.1| exodeoxyribonuclease I [Escherichia coli KTE203]
Length = 475
Score = 325 bits (832), Expect = 2e-85, Method: Composition-based stats.
Identities = 169/434 (38%), Positives = 253/434 (58%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQETRAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYK-INNSDLEL 664
V++ L R + N+K + N + +K IF++ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFVEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|187733588|ref|YP_001879865.1| exonuclease I [Shigella boydii CDC 3083-94]
gi|386614625|ref|YP_006134291.1| exodeoxyribonuclease [Escherichia coli UMNK88]
gi|187430580|gb|ACD09854.1| exodeoxyribonuclease I [Shigella boydii CDC 3083-94]
gi|332343794|gb|AEE57128.1| exodeoxyribonuclease [Escherichia coli UMNK88]
Length = 475
Score = 325 bits (832), Expect = 2e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|432802161|ref|ZP_20036142.1| exodeoxyribonuclease I [Escherichia coli KTE84]
gi|431349138|gb|ELG35980.1| exodeoxyribonuclease I [Escherichia coli KTE84]
Length = 475
Score = 325 bits (832), Expect = 2e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 251/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRVAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|417137854|ref|ZP_11981619.1| exodeoxyribonuclease I [Escherichia coli 97.0259]
gi|417308476|ref|ZP_12095324.1| Exodeoxyribonuclease I [Escherichia coli PCN033]
gi|432869300|ref|ZP_20089985.1| exodeoxyribonuclease I [Escherichia coli KTE147]
gi|338769912|gb|EGP24684.1| Exodeoxyribonuclease I [Escherichia coli PCN033]
gi|386158600|gb|EIH14935.1| exodeoxyribonuclease I [Escherichia coli 97.0259]
gi|431410581|gb|ELG93738.1| exodeoxyribonuclease I [Escherichia coli KTE147]
Length = 475
Score = 325 bits (832), Expect = 2e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|209695175|ref|YP_002263104.1| exonuclease I [Aliivibrio salmonicida LFI1238]
gi|208009127|emb|CAQ79365.1| exodeoxyribonuclease I [Aliivibrio salmonicida LFI1238]
Length = 474
Score = 325 bits (832), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 172/469 (36%), Positives = 263/469 (56%), Gaps = 12/469 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F ++DYET+G + DRP QFA +RTD N I P+++YC+P D+LP P ACLIT I
Sbjct: 8 SFFFFDYETWGTSPSLDRPCQFAGVRTDEDFNIIGEPLVIYCRPPIDYLPSPEACLITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ ++ G+ E +F + I KP T S+GYN I FDDE++R+ +RN PY W+
Sbjct: 68 TPQMAVSKGLSEPEFIAQIHNELSKPNTCSLGYNNIRFDDEVSRYTLYRNFFEPYGWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++A Y L P GI WP GKPSF+LE LS N + H+ AHDA++DV A
Sbjct: 128 NGNSRWDLLDVMRAVYALRPEGIEWPKDEEGKPSFRLEKLSQANGIEHENAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA++++ P++FN++LS+R KK I P +++ MF IS + P+
Sbjct: 188 TIELAKVVKKAQPKMFNYLLSMRHKKKAATLIDIIEMTPLMHVSGMFGVDRGNISWIVPV 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N N +IT +L DP FL D ++ + K++ D +P+ ++HLN+ PI
Sbjct: 248 AWHPTNNNAVITIDLALDPAVFLELDAEQLHQRMYTKRSELGPDELPVPVKLVHLNKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++ D +N+K I N I +K+ Y I + N+D
Sbjct: 308 -LAPAKTLTAENAIALNVDREACLRNLKV---IRENPEIRQKLIDLYNIEPGYEKSSNVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY+ F S D + ++R +P++L + + +++ L+F YRARNF TL+ E
Sbjct: 364 TLLYDGFFSHADKTAIDMIRQSTPEQLIDFEPNVSDPRIKPLLFRYRARNFPHTLNESEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMY 776
RW+ + + ++ + Y L +ES + NE T IL A+ Y
Sbjct: 424 LRWQAH-LQDYFETHMSDYETRFESLYLES---EGNEKKTAILRAVYNY 468
>gi|445494914|ref|ZP_21461958.1| DNA polymerase I [Janthinobacterium sp. HH01]
gi|444791075|gb|ELX12622.1| DNA polymerase I [Janthinobacterium sp. HH01]
Length = 924
Score = 324 bits (831), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 146/278 (52%), Positives = 210/278 (75%), Gaps = 6/278 (2%)
Query: 771 NALLMYGKIDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFD 830
N LL+ +DGSS +YRAF+ALPD+R+ D P GA++G + MLR+L ++ A YIAC+FD
Sbjct: 3 NTLLL---VDGSSYLYRAFHALPDLRSADGHPTGAMHGMVNMLRRLRADFPAAYIACVFD 59
Query: 831 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 890
AKGK FR+ +YP YKATR MP +L LQI IH+ VKA+GWPIL+++GVEADDVIGTL+
Sbjct: 60 AKGKTFRDDMYPEYKATRASMPDDLRLQIEPIHEAVKAMGWPILMVEGVEADDVIGTLSV 119
Query: 891 QAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSL 948
QA + + V++ST DKD+AQLV++K+ LIN N+ D ++++FGV P +I+DY +L
Sbjct: 120 QAA-QAGMNVVVSTGDKDLAQLVNDKVMLINTMTNEKMDEAGVLAKFGVPPNRIIDYLTL 178
Query: 949 IGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKI 1008
IGD DN+PGV K GPKTA+K L Y++L+ +I NA I G +G+NLR AL+WLPK +++
Sbjct: 179 IGDTVDNVPGVSKCGPKTALKWLTAYDTLDGVIANAAQIGGAVGENLRNALDWLPKGREL 238
Query: 1009 LTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
+T+K DCDL++++ +I ESL+ + +D++ L+ F+KY
Sbjct: 239 ITVKLDCDLSEHMTTIAESLVARGEDKETLLAFFSKYG 276
>gi|432417365|ref|ZP_19659972.1| exodeoxyribonuclease I [Escherichia coli KTE44]
gi|430939745|gb|ELC59955.1| exodeoxyribonuclease I [Escherichia coli KTE44]
Length = 475
Score = 324 bits (831), Expect = 2e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKTNGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATISMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|24113393|ref|NP_707903.1| exonuclease I [Shigella flexneri 2a str. 301]
gi|30063460|ref|NP_837631.1| exonuclease I [Shigella flexneri 2a str. 2457T]
gi|384543675|ref|YP_005727738.1| deoxyribophosphodiesterase [Shigella flexneri 2002017]
gi|415855347|ref|ZP_11530751.1| exodeoxyribonuclease I [Shigella flexneri 2a str. 2457T]
gi|417702692|ref|ZP_12351804.1| exodeoxyribonuclease I [Shigella flexneri K-218]
gi|417723551|ref|ZP_12372360.1| exodeoxyribonuclease I [Shigella flexneri K-304]
gi|417728865|ref|ZP_12377569.1| exodeoxyribonuclease I [Shigella flexneri K-671]
gi|417734025|ref|ZP_12382678.1| exodeoxyribonuclease I [Shigella flexneri 2747-71]
gi|417743846|ref|ZP_12392373.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Shigella flexneri 2930-71]
gi|418256911|ref|ZP_12880620.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Shigella flexneri 6603-63]
gi|420342316|ref|ZP_14843796.1| exodeoxyribonuclease I [Shigella flexneri K-404]
gi|424838390|ref|ZP_18263027.1| exonuclease I [Shigella flexneri 5a str. M90T]
gi|24052413|gb|AAN43610.1| exonuclease I, 3 --> 5 specific; deoxyribophosphodiesterase
[Shigella flexneri 2a str. 301]
gi|30041713|gb|AAP17440.1| exonuclease I, 3 --> 5 specific; deoxyribophosphodiesterase
[Shigella flexneri 2a str. 2457T]
gi|281601461|gb|ADA74445.1| deoxyribophosphodiesterase [Shigella flexneri 2002017]
gi|313649951|gb|EFS14371.1| exodeoxyribonuclease I [Shigella flexneri 2a str. 2457T]
gi|332756645|gb|EGJ86994.1| exodeoxyribonuclease I [Shigella flexneri K-671]
gi|332756922|gb|EGJ87267.1| exodeoxyribonuclease I [Shigella flexneri 2747-71]
gi|332766358|gb|EGJ96567.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Shigella flexneri 2930-71]
gi|333002384|gb|EGK21946.1| exodeoxyribonuclease I [Shigella flexneri K-218]
gi|333017067|gb|EGK36388.1| exodeoxyribonuclease I [Shigella flexneri K-304]
gi|383467442|gb|EID62463.1| exonuclease I [Shigella flexneri 5a str. M90T]
gi|391266735|gb|EIQ25682.1| exodeoxyribonuclease I [Shigella flexneri K-404]
gi|397897381|gb|EJL13788.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Shigella flexneri 6603-63]
Length = 474
Score = 324 bits (831), Expect = 2e-85, Method: Composition-based stats.
Identities = 167/433 (38%), Positives = 250/433 (57%), Gaps = 13/433 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT I
Sbjct: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPRPGAVLITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P+
Sbjct: 189 TIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLAHVSGMFGAWRGNTSWVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N +I +L D L DI+ +R+ L K ++ +P+ ++H+N+ P V
Sbjct: 249 AWHPENRNAVIMADLAGDISPLLELDIDTLRERLYTAKADLGDNAAVPVKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLELN 665
++ L R + N+K + N + +K+ + SD N
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD---N 361
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 VDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYA 421
Query: 726 ELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 EQQRWLEHRHQVF 434
>gi|16273288|ref|NP_439529.1| exonuclease I [Haemophilus influenzae Rd KW20]
gi|1169569|sp|P45188.1|EX1_HAEIN RecName: Full=Exodeoxyribonuclease I; Short=Exonuclease I; AltName:
Full=DNA deoxyribophosphodiesterase; Short=dRPase
gi|1574211|gb|AAC23023.1| exodeoxyribonuclease I (sbcB) [Haemophilus influenzae Rd KW20]
Length = 473
Score = 324 bits (831), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 168/427 (39%), Positives = 245/427 (57%), Gaps = 7/427 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YDYE+FG+N DRP QFA IRTD N I PIM YCK D+LP P A ++T I
Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C G+ E +FA+ I F +P T +GYN I +DDE+TR+ F+RN I PYE WK
Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIEPYEYSWK 125
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI W Y ++G PSF+LE L+ N++ H+ AHDA++DV A
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANSIEHENAHDAMADVYA 185
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF + R KK + + P +++ M + + + P+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPL 245
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLNRSP 607
HP N+N LI +L D L +++R L KK +E +P+ ++H+N+ P
Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLAKSADELRADLYTKKLELEERGVSSVPLKLVHINKCP 305
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
I ++ K L R D N+ + + IF + + S+ N++
Sbjct: 306 I-LAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASN--DNVE 362
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
ELYN F S D +AILRS+ +KLS FE+K++ EL+F YRAR+F +TL+ E
Sbjct: 363 TELYNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQ 422
Query: 728 KRWKKYR 734
+WKKYR
Sbjct: 423 IKWKKYR 429
>gi|238755403|ref|ZP_04616744.1| Exodeoxyribonuclease I [Yersinia ruckeri ATCC 29473]
gi|238706340|gb|EEP98716.1| Exodeoxyribonuclease I [Yersinia ruckeri ATCC 29473]
Length = 476
Score = 324 bits (831), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 159/430 (36%), Positives = 248/430 (57%), Gaps = 8/430 (1%)
Query: 309 GNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLI 368
+ TF +DYETFG + DRP QFA +RTD+ N I+ P+++YC PA D+LP P A +I
Sbjct: 6 SSPTFYVHDYETFGQHPALDRPAQFAGVRTDLDFNIIEEPLVVYCSPADDYLPQPEAVMI 65
Query: 369 TKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYER 428
T ITPQ L GI E +F+ I + F GT +GYN I FDDE++R +F+RN +PY
Sbjct: 66 TGITPQTALAKGINEAEFSQQIHQAFSVAGTCILGYNNIRFDDEVSRNIFYRNFYDPYAY 125
Query: 429 EWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSD 488
W+N SRWDL++V++A Y L P GI WP ++G PSFKLEHL+ N + H +AHDA+SD
Sbjct: 126 SWQNGNSRWDLLDVMRACYALRPEGIIWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSD 185
Query: 489 VRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLM 548
V AT+ LA+L++ PRLF+++ R K + A I P +++ MF + S +
Sbjct: 186 VHATIALAKLVKQAQPRLFDYLYQHRSKHKISALIDIAEMTPLVHVSGMFGAARGNTSWV 245
Query: 549 WPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNR 605
P+ HP NKN +I +L D L D +R+ L +++ D +PI ++H+N+
Sbjct: 246 APLAWHPENKNAVIMCDLAGDISPLLELDAETLRERLYTRRDKLSADQAAVPIKLVHINK 305
Query: 606 SPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLEL 664
P++ +L+ N R D +N++ + N I +K+ + +
Sbjct: 306 CPVLAPAKTLLAENAE-RLAIDRQRCLQNLQV---LRQNPQIREKVVTLFAESPPFAASS 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
++D +LY+ F D + I++ +P+ L ++ F++ +L EL+F +RARN+ TL
Sbjct: 362 DVDAQLYDGFFGDADRATMKIIQQTAPQNLPALDLSFQDPRLTELLFRFRARNYPNTLDD 421
Query: 725 KELKRWKKYR 734
E +RW+ +R
Sbjct: 422 SEQRRWQNHR 431
>gi|218705553|ref|YP_002413072.1| exonuclease I [Escherichia coli UMN026]
gi|293405493|ref|ZP_06649485.1| sbcB [Escherichia coli FVEC1412]
gi|298381181|ref|ZP_06990780.1| exodeoxyribonuclease I [Escherichia coli FVEC1302]
gi|417587016|ref|ZP_12237787.1| exodeoxyribonuclease I [Escherichia coli STEC_C165-02]
gi|419932647|ref|ZP_14449942.1| exonuclease I [Escherichia coli 576-1]
gi|422334072|ref|ZP_16415080.1| exodeoxyribonuclease I [Escherichia coli 4_1_47FAA]
gi|432353962|ref|ZP_19597236.1| exodeoxyribonuclease I [Escherichia coli KTE2]
gi|432402314|ref|ZP_19645067.1| exodeoxyribonuclease I [Escherichia coli KTE26]
gi|432426537|ref|ZP_19669039.1| exodeoxyribonuclease I [Escherichia coli KTE181]
gi|432538214|ref|ZP_19775117.1| exodeoxyribonuclease I [Escherichia coli KTE235]
gi|432641482|ref|ZP_19877317.1| exodeoxyribonuclease I [Escherichia coli KTE83]
gi|432666418|ref|ZP_19902000.1| exodeoxyribonuclease I [Escherichia coli KTE116]
gi|432775105|ref|ZP_20009387.1| exodeoxyribonuclease I [Escherichia coli KTE54]
gi|432886945|ref|ZP_20101034.1| exodeoxyribonuclease I [Escherichia coli KTE158]
gi|432913046|ref|ZP_20118856.1| exodeoxyribonuclease I [Escherichia coli KTE190]
gi|433019042|ref|ZP_20207270.1| exodeoxyribonuclease I [Escherichia coli KTE105]
gi|433053630|ref|ZP_20240812.1| exodeoxyribonuclease I [Escherichia coli KTE122]
gi|433178837|ref|ZP_20363238.1| exodeoxyribonuclease I [Escherichia coli KTE82]
gi|218432650|emb|CAR13545.1| exonuclease I [Escherichia coli UMN026]
gi|291427701|gb|EFF00728.1| sbcB [Escherichia coli FVEC1412]
gi|298278623|gb|EFI20137.1| exodeoxyribonuclease I [Escherichia coli FVEC1302]
gi|345336644|gb|EGW69078.1| exodeoxyribonuclease I [Escherichia coli STEC_C165-02]
gi|373244894|gb|EHP64371.1| exodeoxyribonuclease I [Escherichia coli 4_1_47FAA]
gi|388416314|gb|EIL76206.1| exonuclease I [Escherichia coli 576-1]
gi|430876203|gb|ELB99724.1| exodeoxyribonuclease I [Escherichia coli KTE2]
gi|430927144|gb|ELC47731.1| exodeoxyribonuclease I [Escherichia coli KTE26]
gi|430955990|gb|ELC74672.1| exodeoxyribonuclease I [Escherichia coli KTE181]
gi|431070128|gb|ELD78448.1| exodeoxyribonuclease I [Escherichia coli KTE235]
gi|431182098|gb|ELE81925.1| exodeoxyribonuclease I [Escherichia coli KTE83]
gi|431201793|gb|ELF00490.1| exodeoxyribonuclease I [Escherichia coli KTE116]
gi|431318820|gb|ELG06515.1| exodeoxyribonuclease I [Escherichia coli KTE54]
gi|431416990|gb|ELG99461.1| exodeoxyribonuclease I [Escherichia coli KTE158]
gi|431440475|gb|ELH21804.1| exodeoxyribonuclease I [Escherichia coli KTE190]
gi|431531420|gb|ELI08084.1| exodeoxyribonuclease I [Escherichia coli KTE105]
gi|431570566|gb|ELI43477.1| exodeoxyribonuclease I [Escherichia coli KTE122]
gi|431701679|gb|ELJ66593.1| exodeoxyribonuclease I [Escherichia coli KTE82]
Length = 475
Score = 324 bits (831), Expect = 2e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATISMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|423706059|ref|ZP_17680442.1| exodeoxyribonuclease I [Escherichia coli B799]
gi|432806124|ref|ZP_20040062.1| exodeoxyribonuclease I [Escherichia coli KTE91]
gi|432934789|ref|ZP_20134226.1| exodeoxyribonuclease I [Escherichia coli KTE184]
gi|433194044|ref|ZP_20378038.1| exodeoxyribonuclease I [Escherichia coli KTE90]
gi|385712526|gb|EIG49477.1| exodeoxyribonuclease I [Escherichia coli B799]
gi|431355245|gb|ELG41959.1| exodeoxyribonuclease I [Escherichia coli KTE91]
gi|431452957|gb|ELH33367.1| exodeoxyribonuclease I [Escherichia coli KTE184]
gi|431716289|gb|ELJ80423.1| exodeoxyribonuclease I [Escherichia coli KTE90]
Length = 475
Score = 324 bits (831), Expect = 2e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +I+ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHISGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + +D
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPTD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|293395284|ref|ZP_06639569.1| exodeoxyribonuclease I [Serratia odorifera DSM 4582]
gi|291422241|gb|EFE95485.1| exodeoxyribonuclease I [Serratia odorifera DSM 4582]
Length = 453
Score = 324 bits (831), Expect = 2e-85, Method: Composition-based stats.
Identities = 166/460 (36%), Positives = 265/460 (57%), Gaps = 21/460 (4%)
Query: 328 DRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKITPQFCLNNGIPEYKFA 387
DRP QFA +RTD+ N I+ P+++YC PA D+LPDP A +IT ITPQ L G+ E +FA
Sbjct: 2 DRPAQFAGVRTDMDFNIIEEPLVIYCAPADDYLPDPEAVMITGITPQEALAKGVCEAEFA 61
Query: 388 SIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKNNCSRWDLINVIKAFY 447
I + F PGT VGYN I FDDE++R +F+R+ +PY W+N SRWDL++V++A Y
Sbjct: 62 RQIHQAFSVPGTCIVGYNNIRFDDEVSRNIFYRSFYDPYAYSWQNGNSRWDLLDVMRACY 121
Query: 448 VLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRATLGLARLIRNNNPRLF 507
L P GI WP ++G PSF+LEHL+ N ++H++AHDA+SDV AT+ +A+L+R PRLF
Sbjct: 122 ALRPEGIVWPENDDGFPSFRLEHLTRANGVAHEQAHDAMSDVHATIAMAKLVRQAQPRLF 181
Query: 508 NFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPICIHPMNKNILITWNLL 567
+++L R K + A + P +++ MF + S S + P+ HP NKN LI +L
Sbjct: 182 DYLLQHRNKHKLNALVDIAEMTPLVHVSGMFGAARSNTSWVAPLAWHPDNKNALIVCDLA 241
Query: 568 HDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPIVISNLKVLSSNLMFRY 624
D L D +++R+ L +++ D +PI ++H+N+ P++ +L N R
Sbjct: 242 GDMTPLLELDADQLRERLYTRRDRLSADRPPVPIKLVHINKCPVLAPAKTLLPEN-ADRL 300
Query: 625 KFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLELNIDEELYNNFISKKDN 680
D N++ + + + +K+ Y SD ++D LY+ F S D
Sbjct: 301 GIDRQACLNNLQI---LRQHPQVREKVVALYADAEPFAASD---DVDARLYDGFFSDADK 354
Query: 681 LKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKRWKKYRISRFYN 740
+ I++ P+ L ++ F + +++EL+F +RARN+ TL E +RW ++R +
Sbjct: 355 AAMKIIQQTKPQNLPALDLTFNDDRMQELLFRFRARNYPNTLDDGEQRRWLQHRQTALSA 414
Query: 741 KKNNLYNINMFYLEIESL--LKKANEHDTKILNALLMYGK 778
+K + + L++E+L L +A+ +L +L YGK
Sbjct: 415 EK-----VQSYVLQLEALYNLHEADSAKLALLKSLFDYGK 449
>gi|449061165|ref|ZP_21738607.1| exonuclease I [Klebsiella pneumoniae hvKP1]
gi|448873293|gb|EMB08393.1| exonuclease I [Klebsiella pneumoniae hvKP1]
Length = 474
Score = 324 bits (831), Expect = 2e-85, Method: Composition-based stats.
Identities = 166/429 (38%), Positives = 245/429 (57%), Gaps = 7/429 (1%)
Query: 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKIT 372
FL++DYETFG + DRP QFAAIRTD LN + P + YCKPA D+LP P+A +IT IT
Sbjct: 10 FLFHDYETFGTSPSLDRPAQFAAIRTDAELNVLGEPEVFYCKPADDYLPQPQAVMITGIT 69
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
PQ L G E FA I +F P T VGYN + FDDE+TR +F+RN +PY W++
Sbjct: 70 PQEALAKGDNEAAFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRAT 492
+ SRWDL++V++A Y L P GI WP + G PSF+LEHL+ N + H+ AHDA++DV AT
Sbjct: 130 DNSRWDLLDVMRACYSLRPEGIAWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVYAT 189
Query: 493 LGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPIC 552
+ +A+L++ PRLF+++ S R K+ + I P +P +++ MF + SL+ P+
Sbjct: 190 IAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAPLA 249
Query: 553 IHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIVI 610
HP N+N +I +L D L D + +R+ L + + PI ++HLN+ P V+
Sbjct: 250 WHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDLPAAPIKLVHLNKCP-VL 308
Query: 611 SNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL-ELNIDEE 669
+ L R + +N A + N + +K+ Y + N+D +
Sbjct: 309 AQANTLRPQDADRLGISIQRCLEN---AQLLRANPQVREKVVAVYAEAEPFVPSENVDAQ 365
Query: 670 LYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKR 729
LYN F S D + I+ P+ L ++ F +K++E L+F YRARNF TL E +R
Sbjct: 366 LYNGFFSDADRAAMKIVLETEPRNLPALDITFADKRIERLLFNYRARNFPGTLDEHEQQR 425
Query: 730 WKKYRISRF 738
W ++R F
Sbjct: 426 WLEHRRQVF 434
>gi|422669167|ref|ZP_16729017.1| exonuclease I [Pseudomonas syringae pv. aptata str. DSM 50252]
gi|330981526|gb|EGH79629.1| exonuclease I [Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 476
Score = 324 bits (831), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 166/453 (36%), Positives = 259/453 (57%), Gaps = 15/453 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ WYDYET G+N R DR Q A IRTD LN I P+ L+C+ + D LP P AC+IT
Sbjct: 2 TSSIFWYDYETTGINPRNDRALQMAGIRTDTDLNEIAPPVNLHCQLSDDILPHPAACMIT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITP G+ E F + + PGT GYNT+ FDDE+TR+ F+RN +PY RE
Sbjct: 62 GITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSFYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI+V++A Y L P GI WP + +G+ + KLE L+ N + H +A DALSDV
Sbjct: 122 WQGGNSRWDLIDVVRAAYALRPDGIVWP-EQDGRVTLKLERLTAANGIDHGQAPDALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+ LARLIR P+L++++ +LR K+ V ++ + +P +I+ FS+ +Y+ ++
Sbjct: 181 RATIALARLIREKQPKLYDYLFALRSKQKVQEQVR--LMQPLVHISGRFSAARNYLGVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N+N LI +L D L ++ L + ++ + +P+ ++H+NR
Sbjct: 239 PLAWHPHNRNALIVCDLHLDHSPLLHEGAETLKRRLYTRHDALGDGELPVPLKLLHINRC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIW-KKIFLDYKINNSDLELN 665
P VI+ L VL S R + D+ A + A+ + +W K+ Y ++ +
Sbjct: 299 P-VIAPLGVLRSEDQQRLQLDM--AGYQAR-AAQLSERREVWHDKLAAVYGKDDFVASED 354
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+++LY+ FI +D +R P++L+ + F++ +L EL+F YRARNF +TLS +
Sbjct: 355 PEQQLYDGFIGDRDRRLCEQVRQAEPEQLARDAWPFDDARLPELLFRYRARNFPDTLSGE 414
Query: 726 ELKRWKKYRISRF----YNKKNNLYNINMFYLE 754
E RW+ + R + N L++ ++E
Sbjct: 415 EQTRWRDFCQQRLRSPEWGAPNTLHDFTTAWVE 447
>gi|432947896|ref|ZP_20143052.1| exodeoxyribonuclease I [Escherichia coli KTE196]
gi|433043598|ref|ZP_20231094.1| exodeoxyribonuclease I [Escherichia coli KTE117]
gi|431457874|gb|ELH38211.1| exodeoxyribonuclease I [Escherichia coli KTE196]
gi|431555919|gb|ELI29754.1| exodeoxyribonuclease I [Escherichia coli KTE117]
Length = 475
Score = 324 bits (831), Expect = 2e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 249/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF ++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDTQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|386705286|ref|YP_006169133.1| Exodeoxyribonuclease I [Escherichia coli P12b]
gi|417206415|ref|ZP_12019390.1| exodeoxyribonuclease I [Escherichia coli JB1-95]
gi|419142940|ref|ZP_13687681.1| exodeoxyribonuclease I [Escherichia coli DEC6A]
gi|419154381|ref|ZP_13698944.1| exodeoxyribonuclease I [Escherichia coli DEC6C]
gi|419197474|ref|ZP_13740863.1| exodeoxyribonuclease I [Escherichia coli DEC8A]
gi|432685815|ref|ZP_19921117.1| exodeoxyribonuclease I [Escherichia coli KTE156]
gi|377994719|gb|EHV57844.1| exodeoxyribonuclease I [Escherichia coli DEC6A]
gi|377996963|gb|EHV60070.1| exodeoxyribonuclease I [Escherichia coli DEC6C]
gi|378047296|gb|EHW09664.1| exodeoxyribonuclease I [Escherichia coli DEC8A]
gi|383103454|gb|AFG40963.1| Exodeoxyribonuclease I [Escherichia coli P12b]
gi|386197580|gb|EIH91780.1| exodeoxyribonuclease I [Escherichia coli JB1-95]
gi|431222850|gb|ELF20126.1| exodeoxyribonuclease I [Escherichia coli KTE156]
Length = 475
Score = 324 bits (831), Expect = 2e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|419148917|ref|ZP_13693572.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC6B]
gi|419203926|ref|ZP_13747114.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC8B]
gi|419216060|ref|ZP_13759062.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC8D]
gi|419221934|ref|ZP_13764859.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC8E]
gi|419392112|ref|ZP_13932924.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC15A]
gi|419397151|ref|ZP_13937919.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC15B]
gi|419402495|ref|ZP_13943219.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC15C]
gi|419407614|ref|ZP_13948303.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC15D]
gi|420089509|ref|ZP_14601302.1| exonuclease I [Escherichia coli O111:H8 str. CVM9602]
gi|420095902|ref|ZP_14607370.1| exonuclease I [Escherichia coli O111:H8 str. CVM9634]
gi|377992869|gb|EHV56010.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC6B]
gi|378049304|gb|EHW11647.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC8B]
gi|378062544|gb|EHW24721.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC8D]
gi|378065960|gb|EHW28099.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC8E]
gi|378237312|gb|EHX97335.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC15A]
gi|378243272|gb|EHY03218.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC15B]
gi|378247029|gb|EHY06948.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC15C]
gi|378253993|gb|EHY13857.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC15D]
gi|394387575|gb|EJE64991.1| exonuclease I [Escherichia coli O111:H8 str. CVM9602]
gi|394391345|gb|EJE68223.1| exonuclease I [Escherichia coli O111:H8 str. CVM9634]
Length = 474
Score = 324 bits (831), Expect = 2e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 68 ITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 361 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 420
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 421 AEQQRWLEHRRQVF 434
>gi|417085167|ref|ZP_11952657.1| exonuclease I [Escherichia coli cloneA_i1]
gi|419946883|ref|ZP_14463259.1| exonuclease I [Escherichia coli HM605]
gi|432598001|ref|ZP_19834277.1| exodeoxyribonuclease I [Escherichia coli KTE62]
gi|433005472|ref|ZP_20193901.1| exodeoxyribonuclease I [Escherichia coli KTE227]
gi|433154134|ref|ZP_20339077.1| exodeoxyribonuclease I [Escherichia coli KTE176]
gi|355351395|gb|EHG00585.1| exonuclease I [Escherichia coli cloneA_i1]
gi|388411920|gb|EIL72044.1| exonuclease I [Escherichia coli HM605]
gi|431130868|gb|ELE32951.1| exodeoxyribonuclease I [Escherichia coli KTE62]
gi|431514459|gb|ELH92300.1| exodeoxyribonuclease I [Escherichia coli KTE227]
gi|431674024|gb|ELJ40207.1| exodeoxyribonuclease I [Escherichia coli KTE176]
Length = 475
Score = 324 bits (831), Expect = 2e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|422749250|ref|ZP_16803162.1| exonuclease [Escherichia coli H252]
gi|323951765|gb|EGB47639.1| exonuclease [Escherichia coli H252]
Length = 474
Score = 324 bits (831), Expect = 2e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 361 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 420
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 421 AEQQRWLEHRRQVF 434
>gi|12084680|pdb|1FXX|A Chain A, The Structure Of Exonuclease I Suggests How Processivity
Is Achieved
gi|166007143|pdb|2QXF|A Chain A, Product Bound Structure Of Exonuclease I At 1.5 Angstrom
Resolution
gi|193885301|pdb|3C94|A Chain A, ExoiSSB-Ct Complex
gi|193885304|pdb|3C95|A Chain A, Exonuclease I (Apo)
gi|284055587|pdb|3HL8|A Chain A, Crystal Structure Of Exonuclease I In Complex With
Inhibitor Bcbp
gi|284055600|pdb|3HP9|A Chain A, Crystal Structure Of SsbEXONUCLEASE I IN COMPLEX WITH
INHIBITOR CFAM
Length = 482
Score = 324 bits (831), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 169/435 (38%), Positives = 252/435 (57%), Gaps = 13/435 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 67
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY
Sbjct: 68 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 127
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S +
Sbjct: 188 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 247
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSP 607
P+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 248 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP 307
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYK-INNSDLE 663
V++ L R + N+K + N + +K IF + + SD
Sbjct: 308 -VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD-- 361
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL
Sbjct: 362 -NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420
Query: 724 YKELKRWKKYRISRF 738
Y E +RW ++R F
Sbjct: 421 YAEQQRWLEHRRQVF 435
>gi|422832003|ref|ZP_16880131.1| exodeoxyribonuclease I [Escherichia coli B093]
gi|371615860|gb|EHO04242.1| exodeoxyribonuclease I [Escherichia coli B093]
Length = 475
Score = 324 bits (831), Expect = 2e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|251785384|ref|YP_002999688.1| exonuclease I, 3'--> 5' specific; deoxyribophosphodiesterase
[Escherichia coli BL21(DE3)]
gi|253773058|ref|YP_003035889.1| exonuclease I [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|254162000|ref|YP_003045108.1| exonuclease I [Escherichia coli B str. REL606]
gi|254288788|ref|YP_003054536.1| exonuclease I [Escherichia coli BL21(DE3)]
gi|300930717|ref|ZP_07146095.1| exonuclease [Escherichia coli MS 187-1]
gi|432815753|ref|ZP_20049537.1| exodeoxyribonuclease I [Escherichia coli KTE115]
gi|242377657|emb|CAQ32417.1| exonuclease I, 3'--> 5' specific; deoxyribophosphodiesterase
[Escherichia coli BL21(DE3)]
gi|253324102|gb|ACT28704.1| Exodeoxyribonuclease I [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253973901|gb|ACT39572.1| exonuclease I [Escherichia coli B str. REL606]
gi|253978095|gb|ACT43765.1| exonuclease I [Escherichia coli BL21(DE3)]
gi|300461438|gb|EFK24931.1| exonuclease [Escherichia coli MS 187-1]
gi|431363977|gb|ELG50521.1| exodeoxyribonuclease I [Escherichia coli KTE115]
Length = 475
Score = 324 bits (831), Expect = 2e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|417265581|ref|ZP_12052951.1| exodeoxyribonuclease I [Escherichia coli 3.3884]
gi|386232255|gb|EII59601.1| exodeoxyribonuclease I [Escherichia coli 3.3884]
Length = 475
Score = 324 bits (831), Expect = 2e-85, Method: Composition-based stats.
Identities = 169/434 (38%), Positives = 253/434 (58%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQETRAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAIAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYK-INNSDLEL 664
V++ L R + N+K + N + +K IF++ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFVEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|383178977|ref|YP_005456982.1| exonuclease I [Shigella sonnei 53G]
gi|418266339|ref|ZP_12885887.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Shigella sonnei str. Moseley]
gi|397899961|gb|EJL16330.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Shigella sonnei str. Moseley]
Length = 474
Score = 324 bits (831), Expect = 2e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 361 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 420
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 421 AEQQRWLEHRRQVF 434
>gi|414576580|ref|ZP_11433764.1| exodeoxyribonuclease I [Shigella sonnei 3233-85]
gi|415844742|ref|ZP_11524484.1| exodeoxyribonuclease I [Shigella sonnei 53G]
gi|420359078|ref|ZP_14860054.1| exodeoxyribonuclease I [Shigella sonnei 3226-85]
gi|323168854|gb|EFZ54534.1| exodeoxyribonuclease I [Shigella sonnei 53G]
gi|391282679|gb|EIQ41309.1| exodeoxyribonuclease I [Shigella sonnei 3226-85]
gi|391284998|gb|EIQ43585.1| exodeoxyribonuclease I [Shigella sonnei 3233-85]
Length = 475
Score = 324 bits (831), Expect = 2e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|417618609|ref|ZP_12269023.1| exodeoxyribonuclease I [Escherichia coli G58-1]
gi|422772128|ref|ZP_16825817.1| exonuclease [Escherichia coli E482]
gi|323940907|gb|EGB37095.1| exonuclease [Escherichia coli E482]
gi|345375323|gb|EGX07270.1| exodeoxyribonuclease I [Escherichia coli G58-1]
Length = 474
Score = 324 bits (831), Expect = 2e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 248 LAWHPENRNAVIMVDLSGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 361 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 420
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 421 AEQQRWLEHRRQVF 434
>gi|145598704|ref|YP_001162780.1| exonuclease I [Yersinia pestis Pestoides F]
gi|145210400|gb|ABP39807.1| Exodeoxyribonuclease I subunit C [Yersinia pestis Pestoides F]
Length = 476
Score = 324 bits (831), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 168/477 (35%), Positives = 267/477 (55%), Gaps = 15/477 (3%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
N TF +DYETFG DRP QFA +RTD+ N ++ P+++YCKPA D+LP P A +
Sbjct: 5 NKQPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVM 64
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
IT ITPQ L NG+ E +F+ I + F PGT +GYN I FDDE++R +F+RN +PY
Sbjct: 65 ITGITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYA 124
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
W+ SRWDL++V++A Y L P GI WP ++G PSFKLEHL+ N + H +AHDA+S
Sbjct: 125 YSWQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMS 184
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ +A+L++ PRLF+++ R K + A I P +++ MF + S
Sbjct: 185 DVYATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSW 244
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
+ P+ HP NKN +I +L D L D + +R+ L +++ + IPI ++H+N
Sbjct: 245 VAPLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHIN 304
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF-LDYKINNSDLE 663
+ P++ +L N R D +N++ + N + +K+ L + +
Sbjct: 305 KCPVLAPAKTLLPEN-SDRLGIDRQRCLQNLQL---LRQNPQVREKVVALFAQAEPFAVT 360
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
++D +LYN F S D + I++ + L ++ F++ +LE L+F +RARN+ TL+
Sbjct: 361 DDVDTQLYNGFFSDADRATIKIIQQTESQNLPALDLTFQDPRLEALLFRFRARNYPNTLN 420
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK--ILNALLMYGK 778
E +RW ++R ++ + + L++E + + K +L AL Y K
Sbjct: 421 DSEQQRWLQHRREALSPER-----VQDYVLQLEQFYNQYEDDKEKLALLKALFEYAK 472
>gi|419805844|ref|ZP_14330969.1| exonuclease [Escherichia coli AI27]
gi|384471155|gb|EIE55241.1| exonuclease [Escherichia coli AI27]
Length = 499
Score = 324 bits (831), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 170/444 (38%), Positives = 259/444 (58%), Gaps = 15/444 (3%)
Query: 303 DILLHNG--NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFL 360
++++++G STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+L
Sbjct: 23 NLMMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYL 82
Query: 361 PDPRACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWR 420
P P A LIT ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+R
Sbjct: 83 PQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYR 142
Query: 421 NLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHK 480
N +PY W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H
Sbjct: 143 NFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHS 202
Query: 481 KAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSS 540
AHDA++DV AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF +
Sbjct: 203 NAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGA 262
Query: 541 KHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPI 598
S + P+ HP N+N +I +L D L D + +R+ L K ++ +P+
Sbjct: 263 WRGNTSWVAPLAWHPENRNAVIMVDLAGDISLLLELDSDTLRERLYTAKTDLGDNAAVPV 322
Query: 599 SMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDY 655
++H+N+ P V++ L R + N+K + N + +K IF +
Sbjct: 323 KLVHINKCP-VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEA 378
Query: 656 K-INNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYR 714
+ SD N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YR
Sbjct: 379 EPFTPSD---NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYR 435
Query: 715 ARNFIETLSYKELKRWKKYRISRF 738
ARNF TL Y E +RW ++R F
Sbjct: 436 ARNFPGTLDYAEQQRWLEHRRQVF 459
>gi|404375363|ref|ZP_10980547.1| exodeoxyribonuclease I [Escherichia sp. 1_1_43]
gi|404290845|gb|EJZ47743.1| exodeoxyribonuclease I [Escherichia sp. 1_1_43]
Length = 475
Score = 324 bits (831), Expect = 2e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAPVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|415812183|ref|ZP_11504409.1| exodeoxyribonuclease I [Escherichia coli LT-68]
gi|323172599|gb|EFZ58233.1| exodeoxyribonuclease I [Escherichia coli LT-68]
Length = 475
Score = 324 bits (831), Expect = 2e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFMPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|419255361|ref|ZP_13797880.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC10A]
gi|419267644|ref|ZP_13809999.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC10C]
gi|420121838|ref|ZP_14630892.1| exonuclease I [Escherichia coli O26:H11 str. CVM10030]
gi|420128040|ref|ZP_14636603.1| exonuclease I [Escherichia coli O26:H11 str. CVM10224]
gi|420136103|ref|ZP_14644169.1| exonuclease I [Escherichia coli O26:H11 str. CVM9952]
gi|424752656|ref|ZP_18180649.1| exonuclease I [Escherichia coli O26:H11 str. CFSAN001629]
gi|425379991|ref|ZP_18764041.1| exonuclease [Escherichia coli EC1865]
gi|378100347|gb|EHW62043.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC10A]
gi|378111472|gb|EHW73056.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC10C]
gi|394386535|gb|EJE64033.1| exonuclease I [Escherichia coli O26:H11 str. CVM10224]
gi|394418956|gb|EJE92594.1| exonuclease I [Escherichia coli O26:H11 str. CVM9952]
gi|394424715|gb|EJE97799.1| exonuclease I [Escherichia coli O26:H11 str. CVM10030]
gi|408297042|gb|EKJ15207.1| exonuclease [Escherichia coli EC1865]
gi|421937563|gb|EKT95173.1| exonuclease I [Escherichia coli O26:H11 str. CFSAN001629]
Length = 474
Score = 324 bits (831), Expect = 2e-85, Method: Composition-based stats.
Identities = 169/434 (38%), Positives = 252/434 (58%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 68 ITPQETRAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K + +P+ ++H+N+ P
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDTAAVPVKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYK-INNSDLEL 664
V++ L R + N+K + N + +K IF++ + SD
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFVEAEPFTPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 361 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 420
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 421 AEQQRWLEHRRQVF 434
>gi|330000618|ref|ZP_08303759.1| exodeoxyribonuclease I [Klebsiella sp. MS 92-3]
gi|328537942|gb|EGF64123.1| exodeoxyribonuclease I [Klebsiella sp. MS 92-3]
Length = 474
Score = 324 bits (831), Expect = 2e-85, Method: Composition-based stats.
Identities = 165/429 (38%), Positives = 245/429 (57%), Gaps = 7/429 (1%)
Query: 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKIT 372
FL++DYETFG + DRP QFAAIRTD LN + P + YCKPA D+LP P+A +IT IT
Sbjct: 10 FLFHDYETFGTSPSLDRPAQFAAIRTDAELNVLGEPEVFYCKPADDYLPQPQAVMITGIT 69
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
PQ L G E FA I +F P T VGYN + FDDE+TR +F+RN +PY W++
Sbjct: 70 PQEALAKGDNEAAFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRAT 492
+ SRWDL++V++A Y L P GI WP + G PSF+LEHL+ N + H+ AHDA++DV AT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGIAWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVYAT 189
Query: 493 LGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPIC 552
+ +A+L++ PRLF+++ S R K+ + I P +P +++ MF + SL+ P+
Sbjct: 190 IAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAPLA 249
Query: 553 IHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIVI 610
HP N+N +I +L D L D + +R+ L + + PI ++HLN+ P V+
Sbjct: 250 WHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDQPAAPIKLVHLNKCP-VL 308
Query: 611 SNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL-ELNIDEE 669
+ L R + +N A + N + +K+ Y + N+D +
Sbjct: 309 AQANTLRPQDADRLGISIQRCLEN---AQLLRANPQVREKVVAVYAEAEPFVPSENVDAQ 365
Query: 670 LYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKR 729
LYN F S D + I+ P+ L ++ F ++++E L+F YRARNF TL E +R
Sbjct: 366 LYNGFFSDADRAAMKIVLETEPRNLPALDITFADQRIERLLFNYRARNFPGTLDEHEQQR 425
Query: 730 WKKYRISRF 738
W ++R F
Sbjct: 426 WLEHRRQVF 434
>gi|260855993|ref|YP_003229884.1| exonuclease I [Escherichia coli O26:H11 str. 11368]
gi|415793274|ref|ZP_11495994.1| exodeoxyribonuclease I [Escherichia coli EPECa14]
gi|417298473|ref|ZP_12085712.1| exodeoxyribonuclease I [Escherichia coli 900105 (10e)]
gi|257754642|dbj|BAI26144.1| exonuclease I [Escherichia coli O26:H11 str. 11368]
gi|323152400|gb|EFZ38688.1| exodeoxyribonuclease I [Escherichia coli EPECa14]
gi|386258153|gb|EIJ13635.1| exodeoxyribonuclease I [Escherichia coli 900105 (10e)]
Length = 475
Score = 324 bits (831), Expect = 2e-85, Method: Composition-based stats.
Identities = 169/434 (38%), Positives = 252/434 (58%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQETRAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K + +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDTAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYK-INNSDLEL 664
V++ L R + N+K + N + +K IF++ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFVEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|395650801|ref|ZP_10438651.1| exonuclease I [Pseudomonas extremaustralis 14-3 substr. 14-3b]
Length = 475
Score = 324 bits (831), Expect = 2e-85, Method: Composition-based stats.
Identities = 170/465 (36%), Positives = 264/465 (56%), Gaps = 12/465 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++ WYDYET G+N R DRP Q A IRTD LN I + L+C+PA D LP P AC IT
Sbjct: 2 TSIFWYDYETTGINPRSDRPLQVAGIRTDFDLNEIGTAVNLFCRPADDILPHPAACAITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP G+ E F + + PGT GYNT+ FDDE+TR+ +RN +PY REW
Sbjct: 62 ITPGILAEKGLAEADFMTRVHAELAAPGTCGAGYNTLRFDDEMTRYSLYRNFFDPYAREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDLI+V++ Y L P GI WP + +G+ + KLE L+ N + H +AHDALSDVR
Sbjct: 122 QGGNSRWDLIDVVRTAYALRPEGIEWP-QQDGRVTLKLERLTEANGIDHGQAHDALSDVR 180
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LAR IR P+L+ ++ LR K+ V+ ++ + +P +I+ FS++ Y+ ++ P
Sbjct: 181 ATIALARRIRERQPKLYAWLFQLRTKQKVMDQV--RLLQPMVHISGRFSAERHYLGVVLP 238
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP N+N LI +L DP+ L D +R L +++ E +P+ ++H+NR P
Sbjct: 239 LAWHPRNRNALIVCDLGLDPQGLLDLDAQVLRQRLYTRRDELAEGELPVPLKLVHINRCP 298
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWK-KIFLDYKINNSDLELNI 666
V++ L VL + R D+ + A + + +W+ K+ Y + +
Sbjct: 299 -VVAPLNVLRAEDCERLHLDMGIFQER---ALRLSDAQELWRDKLAAIYAEEDFVPSTDP 354
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+++LY+ FI +D +R++ P +L+ + F++ +L EL+F YRARNF +TLS +E
Sbjct: 355 EQQLYDGFIGDRDRRLCEQVRTVEPAQLARQQWPFDDHRLPELLFRYRARNFPDTLSSEE 414
Query: 727 LKRWKKYRISRFYNKKNNLYN-INMFYLEIESLLKKANEHDTKIL 770
+RWK + R + + N + +F L + L A ++L
Sbjct: 415 QQRWKLFCQQRLSDPEWGAPNTLQVFNLARQELAVSATPFQCEVL 459
>gi|397164335|ref|ZP_10487790.1| exodeoxyribonuclease I [Enterobacter radicincitans DSM 16656]
gi|396093483|gb|EJI91038.1| exodeoxyribonuclease I [Enterobacter radicincitans DSM 16656]
Length = 474
Score = 324 bits (831), Expect = 2e-85, Method: Composition-based stats.
Identities = 171/472 (36%), Positives = 263/472 (55%), Gaps = 14/472 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAA+RTD N I P + YCKPA D+LP P A LIT I
Sbjct: 9 TFLFHDYETFGTSPALDRPAQFAALRTDADFNVIGEPEVFYCKPADDYLPQPEAVLITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G E FA I +F P T +GYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQIARAKGENEAAFARRIHDLFTVPKTCVLGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
NN SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 NNNSRWDLLDVMRACYALRPDGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ P+LF+++ S R K+ + A I P +P +++ MF + S + P+
Sbjct: 189 TIAMAQLVKAKQPKLFDYLYSHRNKQKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R+ L K E +P+ ++HLN+ P V
Sbjct: 249 AWHPENRNAVIMVDLAGDMSPLLELDADALRERLYTPKADLGESAAVPVKLVHLNKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL-ELNIDE 668
++ L R + N++ + +N + +K+ + + N+D
Sbjct: 308 LAQANTLRQQDAERLGINRQQCLDNLQI---LRDNPQVREKVLAIFAEAEPFVPSENVDA 364
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
++YN F S D + IL P+ L ++ F + ++E+L+F YRARNF TL E +
Sbjct: 365 QIYNGFFSDADRAAMKILLETEPRNLPALDITFADGRIEKLLFNYRARNFPGTLDENEQQ 424
Query: 729 RWKKYRISRFYNKKNNLYNINMFYLEIESLLKK--ANEHDTKILNALLMYGK 778
RW ++R + F + + + +I++L ++ N +L AL Y +
Sbjct: 425 RWLQHRRNVFTPEY-----LQQYAEQIQALFQQHDGNSEKQALLKALWQYAE 471
>gi|422971994|ref|ZP_16975046.1| exodeoxyribonuclease I [Escherichia coli TA124]
gi|371598302|gb|EHN87109.1| exodeoxyribonuclease I [Escherichia coli TA124]
Length = 475
Score = 324 bits (830), Expect = 2e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITS 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKMRQPRLFDYLFTHRNKHKLIALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|417232270|ref|ZP_12033668.1| exodeoxyribonuclease I [Escherichia coli 5.0959]
gi|418042127|ref|ZP_12680336.1| exonuclease [Escherichia coli W26]
gi|383475072|gb|EID67042.1| exonuclease [Escherichia coli W26]
gi|386205269|gb|EII09780.1| exodeoxyribonuclease I [Escherichia coli 5.0959]
Length = 475
Score = 324 bits (830), Expect = 2e-85, Method: Composition-based stats.
Identities = 166/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + +D
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPTD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|331677916|ref|ZP_08378591.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli H591]
gi|331074376|gb|EGI45696.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli H591]
Length = 491
Score = 324 bits (830), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 177/486 (36%), Positives = 278/486 (57%), Gaps = 22/486 (4%)
Query: 303 DILLHNG--NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFL 360
++++++G STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+L
Sbjct: 15 NLMMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYL 74
Query: 361 PDPRACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWR 420
P P A LIT ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+R
Sbjct: 75 PQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYR 134
Query: 421 NLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHK 480
N +PY W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H
Sbjct: 135 NFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHS 194
Query: 481 KAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSS 540
AHDA++DV AT+ +A+L++ PRLF+++ + R K ++A I P +P +I+ MF +
Sbjct: 195 NAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHISGMFGA 254
Query: 541 KHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPI 598
S + P+ HP N+N +I +L D L D + +R+ L K + ++ +P+
Sbjct: 255 WRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTNLGDNAAVPV 314
Query: 599 SMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDY 655
++H+N+ P V++ L R + N+K + N + +K IF +
Sbjct: 315 KLVHINKCP-VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEA 370
Query: 656 K-INNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYR 714
+ +D N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YR
Sbjct: 371 EPFTPTD---NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYR 427
Query: 715 ARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI--LNA 772
ARNF TL Y E +RW ++R F + + + E++ L+++ + K+ L A
Sbjct: 428 ARNFPGTLDYAEQQRWLEHRRQVFTPEF-----LQGYADELQMLVQQYADDKEKVALLKA 482
Query: 773 LLMYGK 778
L Y +
Sbjct: 483 LWQYAE 488
>gi|261868004|ref|YP_003255926.1| exonuclease I [Aggregatibacter actinomycetemcomitans D11S-1]
gi|261413336|gb|ACX82707.1| exodeoxyribonuclease I [Aggregatibacter actinomycetemcomitans
D11S-1]
Length = 475
Score = 324 bits (830), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 169/433 (39%), Positives = 247/433 (57%), Gaps = 7/433 (1%)
Query: 305 LLHNGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPR 364
++ + +F YDYE+FG+N DRP QF IRTD N I PI+LYCK D+LP P
Sbjct: 1 MMAKNDFSFFIYDYESFGVNPATDRPAQFGGIRTDEDFNIIGEPIVLYCKQTNDYLPAPE 60
Query: 365 ACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLIN 424
A L+T ITPQ C G+ E +FA+ I + F +P T +G+N I +DDE+TR+ F+RN I+
Sbjct: 61 AVLVTGITPQECNEKGLWEPEFAAKILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFID 120
Query: 425 PYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHD 484
PYE WKN SRWDL+++++A Y L P GI WP + G PSF+LE L+ N ++H AHD
Sbjct: 121 PYEYSWKNGNSRWDLLDLVRACYALRPDGIEWPLDDEGMPSFRLEKLTEANGIAHDSAHD 180
Query: 485 ALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSY 544
A+SDV AT+ +A+LI+ P+LF + R KK V I P +++ M +
Sbjct: 181 AMSDVYATIEMAKLIKRKQPKLFQYFFENRGKKEVEKLIDTAEMMPLVHVSGMLGNYRGN 240
Query: 545 ISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISM 600
+L+ P+ HP NKN +I +L D L + ++R+ L KK + +P+ +
Sbjct: 241 TTLIAPLTWHPTNKNAVIVCDLTADIDDLLTKSVGELRENLYTKKETLLAAGALPVPLKL 300
Query: 601 IHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS 660
IH+N+ PIV +L N R D +N + + IF ++
Sbjct: 301 IHINKCPIVAPAKTLLPQNAE-RLGIDQELCAQNRQRLQEAKDIRQKVMDIF--HQEREF 357
Query: 661 DLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIE 720
D N++ ELYN F S D +AILRS+ P+KL+ N F++ ++ EL+F YRAR+F
Sbjct: 358 DASDNVETELYNGFFSDADKNNMAILRSLEPEKLAKHNLSFQDPRIPELLFHYRARHFYR 417
Query: 721 TLSYKELKRWKKY 733
TL+ E +W+KY
Sbjct: 418 TLNRAEQIKWQKY 430
>gi|162138417|ref|YP_541284.2| exonuclease I [Escherichia coli UTI89]
gi|386603957|ref|YP_006110257.1| exonuclease I [Escherichia coli UM146]
gi|432574095|ref|ZP_19810576.1| exodeoxyribonuclease I [Escherichia coli KTE55]
gi|307626441|gb|ADN70745.1| exonuclease I [Escherichia coli UM146]
gi|431108163|gb|ELE12320.1| exodeoxyribonuclease I [Escherichia coli KTE55]
Length = 475
Score = 324 bits (830), Expect = 2e-85, Method: Composition-based stats.
Identities = 165/431 (38%), Positives = 249/431 (57%), Gaps = 7/431 (1%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSRMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDLELNID 667
V++ L R + N+K + N + +K+ + + N+D
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSENVD 364
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y E
Sbjct: 365 AQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQ 424
Query: 728 KRWKKYRISRF 738
+RW ++R F
Sbjct: 425 QRWLEHRRQVF 435
>gi|432446621|ref|ZP_19688920.1| exodeoxyribonuclease I [Escherichia coli KTE191]
gi|432593277|ref|ZP_19829594.1| exodeoxyribonuclease I [Escherichia coli KTE60]
gi|432680591|ref|ZP_19915968.1| exodeoxyribonuclease I [Escherichia coli KTE143]
gi|433023894|ref|ZP_20211882.1| exodeoxyribonuclease I [Escherichia coli KTE106]
gi|430972894|gb|ELC89862.1| exodeoxyribonuclease I [Escherichia coli KTE191]
gi|431127377|gb|ELE29677.1| exodeoxyribonuclease I [Escherichia coli KTE60]
gi|431221521|gb|ELF18842.1| exodeoxyribonuclease I [Escherichia coli KTE143]
gi|431535587|gb|ELI11926.1| exodeoxyribonuclease I [Escherichia coli KTE106]
Length = 475
Score = 324 bits (830), Expect = 2e-85, Method: Composition-based stats.
Identities = 166/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L + ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTARADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|419306846|ref|ZP_13848746.1| exodeoxyribonuclease I [Escherichia coli DEC11D]
gi|419311844|ref|ZP_13853706.1| exodeoxyribonuclease I [Escherichia coli DEC11E]
gi|378148833|gb|EHX09966.1| exodeoxyribonuclease I [Escherichia coli DEC11D]
gi|378157472|gb|EHX18503.1| exodeoxyribonuclease I [Escherichia coli DEC11E]
Length = 475
Score = 324 bits (830), Expect = 2e-85, Method: Composition-based stats.
Identities = 166/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A++++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKMVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|387612599|ref|YP_006115715.1| exodeoxyribonuclease I [Escherichia coli ETEC H10407]
gi|309702335|emb|CBJ01657.1| exodeoxyribonuclease I [Escherichia coli ETEC H10407]
Length = 475
Score = 324 bits (830), Expect = 2e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ + PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTHQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRGRLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|432875543|ref|ZP_20093816.1| exodeoxyribonuclease I [Escherichia coli KTE154]
gi|431420489|gb|ELH02773.1| exodeoxyribonuclease I [Escherichia coli KTE154]
Length = 475
Score = 324 bits (830), Expect = 3e-85, Method: Composition-based stats.
Identities = 166/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + +D
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPTD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|419839199|ref|ZP_14362617.1| exonuclease C-terminal domain protein [Haemophilus haemolyticus
HK386]
gi|386909910|gb|EIJ74574.1| exonuclease C-terminal domain protein [Haemophilus haemolyticus
HK386]
Length = 473
Score = 324 bits (830), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 165/427 (38%), Positives = 246/427 (57%), Gaps = 7/427 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YDYE+FG+N DRP QFA IRTD N I PIM YCK D+LP P A ++T I
Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C G+ E +FA+ I F +P T +GYN I +DDE+TR+ F+RN I+PYE WK
Sbjct: 66 TPQECNEKGLAEPEFAANILVEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI W Y ++G PSF+LE L+ N + H+ AHDA++DV A
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF + R KK + + P +++ M + + + P+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMSPLVHVSGMLGNYRGNCTWVAPL 245
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLNRSP 607
HP N+N LI +L D L +++R L KK+ +E +P+ ++H+N+ P
Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLAKSADELRADLYTKKSELEERGVSSVPLKLVHINKCP 305
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
I ++ K L R D N+ + + IF + + S+ N++
Sbjct: 306 I-LAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVSDIFNEERQFESN--DNVE 362
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
ELYN F S D ++ILRS+ +KL+ FE+K++ EL+F YRAR+F +TL+ E
Sbjct: 363 TELYNGFFSNADKNNMSILRSLPAEKLAEHGLAFEDKRIPELLFHYRARHFYKTLTRAEQ 422
Query: 728 KRWKKYR 734
+W+KYR
Sbjct: 423 IKWRKYR 429
>gi|91072872|gb|ABE07753.1| exodeoxyribonuclease I [Escherichia coli UTI89]
Length = 491
Score = 324 bits (830), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 167/452 (36%), Positives = 260/452 (57%), Gaps = 9/452 (1%)
Query: 292 NSIKKIGNYYIDILLHNG--NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPI 349
+++ N ++++++G STFL++DYETFG + DRP QFAAIRTD N I P
Sbjct: 4 DTLADSRNNGFNLMMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPE 63
Query: 350 MLYCKPAPDFLPDPRACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILF 409
+ YCKPA D+LP P A LIT ITPQ G E FA+ I +F P T +GYN + F
Sbjct: 64 VFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRF 123
Query: 410 DDEITRFMFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLE 469
DDE+TR +F+RN +PY W+++ SRWDL++V++A Y L P GI WP ++G PSF+LE
Sbjct: 124 DDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLE 183
Query: 470 HLSFVNNLSHKKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIAR 529
HL+ N + H AHDA++DV AT+ +A+L++ PRLF+++ + R K ++A I P +
Sbjct: 184 HLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMK 243
Query: 530 PFFYITHMFSSKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKK 589
P +++ MF + S + P+ HP N+N +I +L D L D + +R+ L K
Sbjct: 244 PLVHVSRMFGAWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAK 303
Query: 590 NSFKED--IPISMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYI 647
++ +P+ ++H+N+ P V++ L R + N+K + N +
Sbjct: 304 ADLGDNAAVPVKLVHINKCP-VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQV 359
Query: 648 WKKIFLDY-KINNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKL 706
+K+ + + N+D +LYN F S D + I+ P+ L ++ F +K++
Sbjct: 360 REKVVAIFAEAEPFTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRI 419
Query: 707 EELIFLYRARNFIETLSYKELKRWKKYRISRF 738
E+L+F YRARNF TL Y E +RW ++R F
Sbjct: 420 EKLLFNYRARNFPGTLDYAEQQRWLEHRRQVF 451
>gi|238789860|ref|ZP_04633641.1| Exodeoxyribonuclease I [Yersinia frederiksenii ATCC 33641]
gi|238722056|gb|EEQ13715.1| Exodeoxyribonuclease I [Yersinia frederiksenii ATCC 33641]
Length = 476
Score = 324 bits (830), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 168/473 (35%), Positives = 265/473 (56%), Gaps = 15/473 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF +DYETFG DRP QFA +RTD+ N I+ P+++YCKPA D+LP P A +IT I
Sbjct: 9 TFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVIYCKPADDYLPQPEAVMITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L NG+ E +FA I + F PGT +GYN I FDDE++R +F+RN +PY W+
Sbjct: 69 TPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
SRWDL++V++A Y L P GI WP +G PSFKLEHL+ N + H AHDA+SDV A
Sbjct: 129 GGNSRWDLLDVMRACYALRPEGIVWPENEDGLPSFKLEHLTKANGVEHLHAHDAMSDVHA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF+++ R K + A I P +++ MF + S + P+
Sbjct: 189 TIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIVNMTPLVHVSGMFGAARGNTSWVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKK---NSFKEDIPISMIHLNRSPI 608
HP NKN +I +L D L D + +R+ L ++ N+ +P+ ++H+N+ P+
Sbjct: 249 AWHPDNKNAVIMCDLAGDMSPLLSLDSDTLRERLYTRRDKLNAGDAAVPLKLVHINKCPV 308
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
+ +L+ N R D +N++ + N I +K+ + + + ++D
Sbjct: 309 LAPAKTLLAENAE-RLGIDRQRCLENLQL---LRQNPQIREKVVALFAQAEAFAVSDDVD 364
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LYN F S D + I+ P+ L ++ F++ +LE L F +RARN+ TL+ E
Sbjct: 365 AQLYNGFFSDADRATMKIILQTEPQNLPALDLTFQDSRLEPLFFRFRARNYPNTLTDSEQ 424
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK--ILNALLMYGK 778
+RW ++R + ++ + + L++E + + K +L AL Y +
Sbjct: 425 QRWLEHRRAALSPER-----VQDYVLQLEQFYNQYEDDKEKLALLKALFEYAR 472
>gi|432862212|ref|ZP_20086897.1| exodeoxyribonuclease I [Escherichia coli KTE146]
gi|431405431|gb|ELG88673.1| exodeoxyribonuclease I [Escherichia coli KTE146]
Length = 475
Score = 324 bits (830), Expect = 3e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 249/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP +G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENEDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|419700860|ref|ZP_14228463.1| exonuclease I [Escherichia coli SCI-07]
gi|425278299|ref|ZP_18669551.1| exonuclease [Escherichia coli ARS4.2123]
gi|425300707|ref|ZP_18690646.1| exonuclease [Escherichia coli 07798]
gi|380348109|gb|EIA36394.1| exonuclease I [Escherichia coli SCI-07]
gi|408202418|gb|EKI27530.1| exonuclease [Escherichia coli ARS4.2123]
gi|408216142|gb|EKI40476.1| exonuclease [Escherichia coli 07798]
Length = 474
Score = 324 bits (830), Expect = 3e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 361 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 420
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 421 AEQQRWLEHRRQVF 434
>gi|218699399|ref|YP_002407028.1| exonuclease I [Escherichia coli IAI39]
gi|306814865|ref|ZP_07449027.1| exonuclease I [Escherichia coli NC101]
gi|386624659|ref|YP_006144387.1| exonuclease I [Escherichia coli O7:K1 str. CE10]
gi|415841023|ref|ZP_11522245.1| exodeoxyribonuclease I [Escherichia coli RN587/1]
gi|417281098|ref|ZP_12068398.1| exodeoxyribonuclease I [Escherichia coli 3003]
gi|422379855|ref|ZP_16460039.1| exonuclease [Escherichia coli MS 57-2]
gi|432387569|ref|ZP_19630459.1| exodeoxyribonuclease I [Escherichia coli KTE16]
gi|432397850|ref|ZP_19640631.1| exodeoxyribonuclease I [Escherichia coli KTE25]
gi|432407078|ref|ZP_19649787.1| exodeoxyribonuclease I [Escherichia coli KTE28]
gi|432514319|ref|ZP_19751544.1| exodeoxyribonuclease I [Escherichia coli KTE224]
gi|432699447|ref|ZP_19934602.1| exodeoxyribonuclease I [Escherichia coli KTE169]
gi|432723474|ref|ZP_19958394.1| exodeoxyribonuclease I [Escherichia coli KTE17]
gi|432728061|ref|ZP_19962940.1| exodeoxyribonuclease I [Escherichia coli KTE18]
gi|432732755|ref|ZP_19967588.1| exodeoxyribonuclease I [Escherichia coli KTE45]
gi|432741755|ref|ZP_19976474.1| exodeoxyribonuclease I [Escherichia coli KTE23]
gi|432746060|ref|ZP_19980727.1| exodeoxyribonuclease I [Escherichia coli KTE43]
gi|432759839|ref|ZP_19994334.1| exodeoxyribonuclease I [Escherichia coli KTE46]
gi|432894898|ref|ZP_20106719.1| exodeoxyribonuclease I [Escherichia coli KTE165]
gi|432905237|ref|ZP_20114143.1| exodeoxyribonuclease I [Escherichia coli KTE194]
gi|432972220|ref|ZP_20161088.1| exodeoxyribonuclease I [Escherichia coli KTE207]
gi|432991062|ref|ZP_20179726.1| exodeoxyribonuclease I [Escherichia coli KTE217]
gi|433039015|ref|ZP_20226616.1| exodeoxyribonuclease I [Escherichia coli KTE113]
gi|433082975|ref|ZP_20269432.1| exodeoxyribonuclease I [Escherichia coli KTE133]
gi|433111273|ref|ZP_20297138.1| exodeoxyribonuclease I [Escherichia coli KTE150]
gi|433144607|ref|ZP_20329752.1| exodeoxyribonuclease I [Escherichia coli KTE168]
gi|218369385|emb|CAR17142.1| exonuclease I [Escherichia coli IAI39]
gi|305852259|gb|EFM52711.1| exonuclease I [Escherichia coli NC101]
gi|323187688|gb|EFZ72989.1| exodeoxyribonuclease I [Escherichia coli RN587/1]
gi|324008954|gb|EGB78173.1| exonuclease [Escherichia coli MS 57-2]
gi|345432621|dbj|BAK68952.1| exonuclease I [Escherichia coli O157:H45]
gi|349738397|gb|AEQ13103.1| exonuclease I [Escherichia coli O7:K1 str. CE10]
gi|386245427|gb|EII87157.1| exodeoxyribonuclease I [Escherichia coli 3003]
gi|430906962|gb|ELC28467.1| exodeoxyribonuclease I [Escherichia coli KTE16]
gi|430915954|gb|ELC37032.1| exodeoxyribonuclease I [Escherichia coli KTE25]
gi|430929837|gb|ELC50346.1| exodeoxyribonuclease I [Escherichia coli KTE28]
gi|431042020|gb|ELD52513.1| exodeoxyribonuclease I [Escherichia coli KTE224]
gi|431243596|gb|ELF37979.1| exodeoxyribonuclease I [Escherichia coli KTE169]
gi|431266028|gb|ELF57590.1| exodeoxyribonuclease I [Escherichia coli KTE17]
gi|431273750|gb|ELF64824.1| exodeoxyribonuclease I [Escherichia coli KTE18]
gi|431275942|gb|ELF66969.1| exodeoxyribonuclease I [Escherichia coli KTE45]
gi|431283446|gb|ELF74305.1| exodeoxyribonuclease I [Escherichia coli KTE23]
gi|431291405|gb|ELF81913.1| exodeoxyribonuclease I [Escherichia coli KTE43]
gi|431309012|gb|ELF97291.1| exodeoxyribonuclease I [Escherichia coli KTE46]
gi|431422811|gb|ELH05003.1| exodeoxyribonuclease I [Escherichia coli KTE165]
gi|431433537|gb|ELH15209.1| exodeoxyribonuclease I [Escherichia coli KTE194]
gi|431482921|gb|ELH62623.1| exodeoxyribonuclease I [Escherichia coli KTE207]
gi|431495144|gb|ELH74730.1| exodeoxyribonuclease I [Escherichia coli KTE217]
gi|431551713|gb|ELI25685.1| exodeoxyribonuclease I [Escherichia coli KTE113]
gi|431601867|gb|ELI71376.1| exodeoxyribonuclease I [Escherichia coli KTE133]
gi|431628577|gb|ELI96953.1| exodeoxyribonuclease I [Escherichia coli KTE150]
gi|431661955|gb|ELJ28766.1| exodeoxyribonuclease I [Escherichia coli KTE168]
Length = 475
Score = 324 bits (830), Expect = 3e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|417634934|ref|ZP_12285148.1| exodeoxyribonuclease I [Escherichia coli STEC_S1191]
gi|345388425|gb|EGX18236.1| exodeoxyribonuclease I [Escherichia coli STEC_S1191]
Length = 475
Score = 324 bits (830), Expect = 3e-85, Method: Composition-based stats.
Identities = 166/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVSFDDEVTRNIFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + +D
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPTD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|444347149|ref|ZP_21155097.1| exodeoxyribonuclease I [Aggregatibacter actinomycetemcomitans
serotype c str. AAS4A]
gi|443540872|gb|ELT51388.1| exodeoxyribonuclease I [Aggregatibacter actinomycetemcomitans
serotype c str. AAS4A]
Length = 474
Score = 324 bits (830), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 169/426 (39%), Positives = 244/426 (57%), Gaps = 7/426 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YDYE+FG+N DRP QF IRTD N I PI+LYCK D+LP P A L+T I
Sbjct: 7 SFFIYDYESFGVNPATDRPAQFGGIRTDEDFNIIGEPIVLYCKQTNDYLPAPEAVLVTGI 66
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C G+ E +FA+ I + F +P T +G+N I +DDE+TR+ F+RN I+PYE WK
Sbjct: 67 TPQECNEKGLWEPEFAAKILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWK 126
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI WP + G PSF+LE L+ N ++H AHDA+SDV A
Sbjct: 127 NGNSRWDLLDLVRACYALRPDGIEWPLDDEGMPSFRLEKLTEANGIAHDSAHDAMSDVYA 186
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF + R KK V I P +++ M + +L+ P+
Sbjct: 187 TIEMAKLIKRKQPKLFQYFFENRGKKEVEKLIDTAEMMPLVHVSGMLGNYRGNTTLIAPL 246
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLNRSP 607
HP NKN +I +L D L + ++R+ L KK + +P+ +IH+N+ P
Sbjct: 247 TWHPTNKNAVIVCDLTADIDDLLTKSVGELRENLYTKKETLLAAGALPVPLKLIHINKCP 306
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
IV +L N R D +N + + IF ++ D N++
Sbjct: 307 IVAPAKTLLPQNAE-RLGIDQELCAQNRQRLQEAKDIRQKVMDIF--HQEREFDASDNVE 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
ELYN F S D +AILRS+ P+KL+ N F++ ++ EL+F YRAR+F TL+ E
Sbjct: 364 TELYNGFFSDADKNNMAILRSLEPEKLAKHNLSFQDPRIPELLFHYRARHFYRTLNRAEQ 423
Query: 728 KRWKKY 733
+W+KY
Sbjct: 424 IKWQKY 429
>gi|145636088|ref|ZP_01791758.1| exonuclease I [Haemophilus influenzae PittHH]
gi|145270610|gb|EDK10543.1| exonuclease I [Haemophilus influenzae PittHH]
Length = 440
Score = 324 bits (830), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 168/427 (39%), Positives = 245/427 (57%), Gaps = 7/427 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YDYE+FG+N DRP QFA IRTD N I PIM YCK D+LP P A ++T I
Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C G+ E +FA+ I F +P T +GYN I +DDE+TR+ F+RN I+PYE WK
Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI W Y ++G PSF+LE L+ N + H+ AHDA++DV A
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF + R KK + + P +++ M + + + P+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPL 245
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLNRSP 607
HP N+N LI +L D L +++R L KK +E +P+ ++H+N+ P
Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLAKSADELRADLYTKKLELEERGVSSVPLKLVHINKCP 305
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
I ++ K L R D N+ + + IF + + S+ N++
Sbjct: 306 I-LAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASN--DNVE 362
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
ELYN F S D +AILRS+ +KLS FE+K++ EL+F YRAR+F +TL+ E
Sbjct: 363 TELYNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKRILELLFHYRARHFYKTLTRAEQ 422
Query: 728 KRWKKYR 734
+WKKYR
Sbjct: 423 IKWKKYR 429
>gi|432661246|ref|ZP_19896892.1| exodeoxyribonuclease I [Escherichia coli KTE111]
gi|431200362|gb|ELE99088.1| exodeoxyribonuclease I [Escherichia coli KTE111]
Length = 475
Score = 324 bits (830), Expect = 3e-85, Method: Composition-based stats.
Identities = 166/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + +D
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPTD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDTQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|332278835|ref|ZP_08391248.1| exonuclease I [Shigella sp. D9]
gi|332101187|gb|EGJ04533.1| exonuclease I [Shigella sp. D9]
Length = 491
Score = 324 bits (830), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 170/444 (38%), Positives = 258/444 (58%), Gaps = 15/444 (3%)
Query: 303 DILLHNG--NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFL 360
++++++G STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+L
Sbjct: 15 NLMMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYL 74
Query: 361 PDPRACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWR 420
P P A LIT ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+R
Sbjct: 75 PQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYR 134
Query: 421 NLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHK 480
N +PY W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H
Sbjct: 135 NFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHS 194
Query: 481 KAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSS 540
AHDA++DV AT+ +A+L++ PRLF ++ + R K ++A I P +P +++ MF +
Sbjct: 195 NAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGA 254
Query: 541 KHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPI 598
S + P+ HP N+N +I +L D L D + +R+ L K ++ +P+
Sbjct: 255 WRGNTSWVVPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPV 314
Query: 599 SMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDY 655
++H+N+ P V++ L R + N+K + N + +K IF +
Sbjct: 315 KLVHINKCP-VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEA 370
Query: 656 K-INNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYR 714
+ SD N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YR
Sbjct: 371 EPFTPSD---NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYR 427
Query: 715 ARNFIETLSYKELKRWKKYRISRF 738
ARNF TL Y E +RW ++R F
Sbjct: 428 ARNFPGTLDYAEQQRWLEHRRQVF 451
>gi|407687434|ref|YP_006802607.1| exodeoxyribonuclease I [Alteromonas macleodii str. 'Balearic Sea
AD45']
gi|407290814|gb|AFT95126.1| exodeoxyribonuclease I [Alteromonas macleodii str. 'Balearic Sea
AD45']
Length = 476
Score = 324 bits (830), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 174/474 (36%), Positives = 270/474 (56%), Gaps = 11/474 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFLW+D+ETFG + ++D P QFAA+RTD+ LN I PI + A D+LP P ACL+T I
Sbjct: 5 TFLWHDFETFGTSPQKDLPCQFAAVRTDMDLNVIGKPINIMSAIANDYLPHPEACLVTGI 64
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + +G E FA+ I + P T SVG+N+I FDDE++R++F+RN +PY REW+
Sbjct: 65 TPQQTIRDGSNEADFAARIYQEMSTPNTCSVGFNSIRFDDEVSRYLFYRNFYDPYSREWR 124
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD+I++ +A Y L P GI WP + +G PSFKLE L+ NN+ H+ AHDALSDV A
Sbjct: 125 NGNSRWDIIDLARACYALRPDGINWPRREDGAPSFKLEALTAANNIGHENAHDALSDVYA 184
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+LI+ PRLF++ LSLR K V+ +I +I+ + + + P+
Sbjct: 185 TIALAKLIKEKQPRLFDYALSLRSKHTVMQQIELTKPSVLLHISSKLPASQGCCTWVMPV 244
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDIP---ISMIHLNRSPI 608
HP N N I +L HD + + +IR L ++F + + + +IH+NRSP
Sbjct: 245 AKHPTNSNAFIAIDLSHDIDSLVNDTPEEIRQALYAPSDTFDDALERPGLKLIHVNRSPF 304
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
I+ K ++ + R D N K +S+ + KI Y + EL+ID
Sbjct: 305 -ITTAKAMTEDNAGRLGLDRERCLDNYKVLASMPE---LATKIVDVYDDDIQSGELDIDH 360
Query: 669 ELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY+ F++++D + P L+ ++ +++ L + +F YRARN+ TL+ E+
Sbjct: 361 ALYSGGFLNEEDRRWCERVIEAQPDDLATLSEKTQHEGLRKQLFRYRARNYPNTLTADEM 420
Query: 728 KRWKKYRISRFYNKK-NNLYNINMFYLEIESLLKKANEHDTK--ILNALLMYGK 778
RW+ +R +R + + + + + +ESL + +++ K IL AL Y +
Sbjct: 421 TRWQHHRQARLTDSAFHGSITLENYMMRLESLAHEYSDNPEKQAILRALYQYAE 474
>gi|331647660|ref|ZP_08348752.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli M605]
gi|331043384|gb|EGI15522.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli M605]
Length = 491
Score = 324 bits (830), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 171/455 (37%), Positives = 263/455 (57%), Gaps = 15/455 (3%)
Query: 292 NSIKKIGNYYIDILLHNG--NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPI 349
+++ N ++++++G STFL++DYETFG + DRP QFAAIRTD N I P
Sbjct: 4 DTLADSRNNGFNLMMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPE 63
Query: 350 MLYCKPAPDFLPDPRACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILF 409
+ YCKPA D+LP P A LIT ITPQ G E FA+ I +F P T +GYN + F
Sbjct: 64 VFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRF 123
Query: 410 DDEITRFMFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLE 469
DDE+TR +F+RN +PY W+++ SRWDL++V++A Y L P GI WP ++G PSF+LE
Sbjct: 124 DDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLE 183
Query: 470 HLSFVNNLSHKKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIAR 529
HL+ N + H AHDA++DV AT+ +A+L++ PRLF+++ + R K ++A I P +
Sbjct: 184 HLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMK 243
Query: 530 PFFYITHMFSSKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKK 589
P +++ MF + S + P+ HP N+N +I +L D L D + +R+ L K
Sbjct: 244 PLVHVSGMFGAWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAK 303
Query: 590 NSFKED--IPISMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYI 647
++ +P+ ++H+N+ P V++ L R + N+K + N +
Sbjct: 304 ADLGDNAAVPVKLVHINKCP-VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQV 359
Query: 648 WKK---IFLDYK-INNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFEN 703
+K IF + + SD N+D +LYN F S D + I+ P+ L ++ F +
Sbjct: 360 REKVVAIFAEAEPFTPSD---NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD 416
Query: 704 KKLEELIFLYRARNFIETLSYKELKRWKKYRISRF 738
K++E+L+F YRARNF TL Y E +RW ++R F
Sbjct: 417 KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVF 451
>gi|425082298|ref|ZP_18485395.1| exodeoxyribonuclease I [Klebsiella pneumoniae subsp. pneumoniae
WGLW2]
gi|428935569|ref|ZP_19009036.1| exonuclease I [Klebsiella pneumoniae JHCK1]
gi|405600550|gb|EKB73715.1| exodeoxyribonuclease I [Klebsiella pneumoniae subsp. pneumoniae
WGLW2]
gi|426300239|gb|EKV62533.1| exonuclease I [Klebsiella pneumoniae JHCK1]
Length = 474
Score = 324 bits (830), Expect = 3e-85, Method: Composition-based stats.
Identities = 167/432 (38%), Positives = 246/432 (56%), Gaps = 13/432 (3%)
Query: 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKIT 372
FL++DYETFG + DRP QFAAIRTD LN + P + YCKPA D+LP P+A +IT IT
Sbjct: 10 FLFHDYETFGTSPSLDRPAQFAAIRTDAELNVLGEPEVFYCKPADDYLPQPQAVMITGIT 69
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
PQ L G E FA I +F P T VGYN + FDDE+TR +F+RN +PY W++
Sbjct: 70 PQEALAKGDNEATFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRAT 492
+ SRWDL++V++A Y L P GI WP + G PSF+LEHL+ N + H+ AHDA++DV AT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGIAWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVYAT 189
Query: 493 LGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPIC 552
+ +A+L++ PRLF+++ S R K+ + I P +P +++ MF + SL+ P+
Sbjct: 190 IAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAPLA 249
Query: 553 IHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIVI 610
HP N+N +I +L D L D + +R+ L + + PI ++HLN+ P V+
Sbjct: 250 WHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDLPAAPIKLVHLNKCP-VL 308
Query: 611 SNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINN----SDLELNI 666
+ L R + +N A + N + +K+ Y SD N+
Sbjct: 309 AQANTLRPQDADRLGISIQRCLEN---AQLLRANPQVREKVVAVYAEAEPFVPSD---NV 362
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
D +LYN F S D + I+ P+ L ++ F +K++E L+F YRARNF TL +
Sbjct: 363 DAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFADKRIERLLFNYRARNFPGTLDEAD 422
Query: 727 LKRWKKYRISRF 738
+RW ++R F
Sbjct: 423 QQRWLEHRRQVF 434
>gi|417843296|ref|ZP_12489372.1| Exodeoxyribonuclease I [Haemophilus haemolyticus M21127]
gi|341950057|gb|EGT76652.1| Exodeoxyribonuclease I [Haemophilus haemolyticus M21127]
Length = 473
Score = 323 bits (829), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 164/427 (38%), Positives = 248/427 (58%), Gaps = 7/427 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YDYE+FG+N DRP QFA IRTD N I PIM YCK D+LP P A ++T I
Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C G+ E +FA+ I F +P T +GYN I +DDE+TR+ F+RN I+PYE WK
Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI W Y ++G PSF+LE L+ N + H+ AHDA++DV A
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYNDDGMPSFRLEKLTKANGIKHENAHDAMADVYA 185
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF + R KK + + P +++ M + + + P+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGTMAPLVHVSGMLGNYRGNCTWVAPL 245
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLNRSP 607
HP N+N LI +L D L+ ++++R L KK+ +E +P+ ++H+N+ P
Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLVKSVDELRTDLYTKKSELEERGVSSVPLKLVHVNKCP 305
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
I ++ K L R + N+ + + IF + + S+ N++
Sbjct: 306 I-LAPAKTLLPETANRLGINRQLCLDNLAKLRASFDIREKVADIFNEERQFESN--DNVE 362
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
ELYN F S D ++ILRS+ +KL+ FE+K++ EL+F YRAR+F +TL+ E
Sbjct: 363 TELYNGFFSNADKNNMSILRSLPAEKLAEHGLAFEDKRIPELLFHYRARHFYKTLTRAEQ 422
Query: 728 KRWKKYR 734
+W+KYR
Sbjct: 423 IKWQKYR 429
>gi|433198589|ref|ZP_20382501.1| exodeoxyribonuclease I [Escherichia coli KTE94]
gi|431723255|gb|ELJ87217.1| exodeoxyribonuclease I [Escherichia coli KTE94]
Length = 475
Score = 323 bits (829), Expect = 3e-85, Method: Composition-based stats.
Identities = 168/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF++I + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYIFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|442597483|ref|ZP_21015274.1| Exodeoxyribonuclease I [Escherichia coli O5:K4(L):H4 str. ATCC
23502]
gi|441653963|emb|CCQ01164.1| Exodeoxyribonuclease I [Escherichia coli O5:K4(L):H4 str. ATCC
23502]
Length = 475
Score = 323 bits (829), Expect = 3e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|74312553|ref|YP_310972.1| exonuclease I [Shigella sonnei Ss046]
gi|73856030|gb|AAZ88737.1| deoxyribophosphodiesterase [Shigella sonnei Ss046]
Length = 475
Score = 323 bits (829), Expect = 3e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|331653435|ref|ZP_08354436.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli M718]
gi|331048284|gb|EGI20360.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli M718]
Length = 491
Score = 323 bits (829), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 178/486 (36%), Positives = 276/486 (56%), Gaps = 22/486 (4%)
Query: 303 DILLHNG--NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFL 360
++++++G STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+L
Sbjct: 15 NLMMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYL 74
Query: 361 PDPRACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWR 420
P P A LIT ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+R
Sbjct: 75 PQPGAVLITGITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYR 134
Query: 421 NLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHK 480
N +PY W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H
Sbjct: 135 NFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHS 194
Query: 481 KAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSS 540
AHDA++DV AT+ +A+L++ PRLF+++ + R K ++A I P P +++ MF +
Sbjct: 195 NAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMNPLVHVSGMFGA 254
Query: 541 KHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPI 598
S + P+ HP N+N +I +L D L D + +R+ L K ++ +P+
Sbjct: 255 WRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPV 314
Query: 599 SMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDY 655
++H+N+ P V++ L R + N+K + N + +K IF +
Sbjct: 315 KLVHINKCP-VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEA 370
Query: 656 K-INNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYR 714
+ SD N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YR
Sbjct: 371 EPFTPSD---NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYR 427
Query: 715 ARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI--LNA 772
ARNF TL Y E +RW ++R F ++ + + EI+ L ++ + K+ L A
Sbjct: 428 ARNFPGTLDYAEQQRWLEHRRQIFTSEF-----LQGYAEEIQMLAQQYADDKEKVALLKA 482
Query: 773 LLMYGK 778
L Y +
Sbjct: 483 LWQYAE 488
>gi|407469909|ref|YP_006783648.1| exonuclease I [Escherichia coli O104:H4 str. 2009EL-2071]
gi|407481426|ref|YP_006778575.1| exonuclease I [Escherichia coli O104:H4 str. 2011C-3493]
gi|410481976|ref|YP_006769522.1| exonuclease I [Escherichia coli O104:H4 str. 2009EL-2050]
gi|417805581|ref|ZP_12452531.1| exonuclease I [Escherichia coli O104:H4 str. LB226692]
gi|340739949|gb|EGR74180.1| exonuclease I [Escherichia coli O104:H4 str. LB226692]
gi|406777138|gb|AFS56562.1| exonuclease I [Escherichia coli O104:H4 str. 2009EL-2050]
gi|407053723|gb|AFS73774.1| exonuclease I [Escherichia coli O104:H4 str. 2011C-3493]
gi|407065944|gb|AFS86991.1| exonuclease I [Escherichia coli O104:H4 str. 2009EL-2071]
Length = 474
Score = 323 bits (829), Expect = 3e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 68 ITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 361 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 420
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 421 AEQQRWLEHRRQVF 434
>gi|416266661|ref|ZP_11641679.1| Exodeoxyribonuclease I [Shigella dysenteriae CDC 74-1112]
gi|420380750|ref|ZP_14880209.1| exodeoxyribonuclease I [Shigella dysenteriae 225-75]
gi|320175604|gb|EFW50697.1| Exodeoxyribonuclease I [Shigella dysenteriae CDC 74-1112]
gi|391301386|gb|EIQ59276.1| exodeoxyribonuclease I [Shigella dysenteriae 225-75]
Length = 475
Score = 323 bits (829), Expect = 3e-85, Method: Composition-based stats.
Identities = 169/434 (38%), Positives = 252/434 (58%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMNPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYK-INNSDLEL 664
V++ L R + N+K + N + +K IF++ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFVEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|218690073|ref|YP_002398285.1| exonuclease I [Escherichia coli ED1a]
gi|432370151|ref|ZP_19613239.1| exodeoxyribonuclease I [Escherichia coli KTE10]
gi|432622225|ref|ZP_19858256.1| exodeoxyribonuclease I [Escherichia coli KTE76]
gi|218427637|emb|CAR08548.2| exonuclease I [Escherichia coli ED1a]
gi|430885284|gb|ELC08210.1| exodeoxyribonuclease I [Escherichia coli KTE10]
gi|431159025|gb|ELE59582.1| exodeoxyribonuclease I [Escherichia coli KTE76]
Length = 475
Score = 323 bits (829), Expect = 3e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|218695636|ref|YP_002403303.1| exonuclease I [Escherichia coli 55989]
gi|417613450|ref|ZP_12263911.1| exodeoxyribonuclease I [Escherichia coli STEC_EH250]
gi|417863672|ref|ZP_12508720.1| hypothetical protein C22711_0605 [Escherichia coli O104:H4 str.
C227-11]
gi|422988143|ref|ZP_16978916.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. C227-11]
gi|422995034|ref|ZP_16985798.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. C236-11]
gi|423000109|ref|ZP_16990863.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 09-7901]
gi|423003778|ref|ZP_16994524.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 04-8351]
gi|423010351|ref|ZP_17001085.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-3677]
gi|423019578|ref|ZP_17010287.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-4404]
gi|423024744|ref|ZP_17015441.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-4522]
gi|423030565|ref|ZP_17021253.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-4623]
gi|423038392|ref|ZP_17029066.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-4632 C1]
gi|423043511|ref|ZP_17034178.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-4632 C2]
gi|423045240|ref|ZP_17035900.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-4632 C3]
gi|423053779|ref|ZP_17042586.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-4632 C4]
gi|423060754|ref|ZP_17049550.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-4632 C5]
gi|429719619|ref|ZP_19254551.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. Ec11-9450]
gi|429771505|ref|ZP_19303528.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-02030]
gi|429781437|ref|ZP_19313366.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-02033-1]
gi|429785085|ref|ZP_19316990.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-02092]
gi|429791066|ref|ZP_19322923.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-02093]
gi|429796892|ref|ZP_19328701.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-02281]
gi|429798491|ref|ZP_19330292.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-02318]
gi|429807004|ref|ZP_19338731.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-02913]
gi|429811837|ref|ZP_19343527.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-03439]
gi|429817424|ref|ZP_19349065.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-04080]
gi|429822635|ref|ZP_19354233.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-03943]
gi|429904015|ref|ZP_19369994.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. Ec11-9990]
gi|429908151|ref|ZP_19374115.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. Ec11-9941]
gi|429914023|ref|ZP_19379971.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. Ec11-4984]
gi|429919054|ref|ZP_19384986.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. Ec11-5604]
gi|429924873|ref|ZP_19390787.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. Ec11-4986]
gi|429928810|ref|ZP_19394712.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. Ec11-4987]
gi|429935349|ref|ZP_19401235.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. Ec11-4988]
gi|429941029|ref|ZP_19406903.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. Ec11-5603]
gi|429943709|ref|ZP_19409572.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. Ec11-6006]
gi|429951306|ref|ZP_19417152.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. Ec12-0465]
gi|429954620|ref|ZP_19420452.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. Ec12-0466]
gi|218352368|emb|CAU98142.1| exonuclease I [Escherichia coli 55989]
gi|341916961|gb|EGT66578.1| hypothetical protein C22711_0605 [Escherichia coli O104:H4 str.
C227-11]
gi|345362961|gb|EGW95106.1| exodeoxyribonuclease I [Escherichia coli STEC_EH250]
gi|354861869|gb|EHF22307.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. C236-11]
gi|354867154|gb|EHF27576.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. C227-11]
gi|354869225|gb|EHF29635.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 04-8351]
gi|354873080|gb|EHF33457.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 09-7901]
gi|354879834|gb|EHF40170.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-3677]
gi|354890079|gb|EHF50324.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-4404]
gi|354892852|gb|EHF53056.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-4522]
gi|354895551|gb|EHF55737.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-4632 C1]
gi|354897263|gb|EHF57421.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-4623]
gi|354899475|gb|EHF59623.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-4632 C2]
gi|354912676|gb|EHF72674.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-4632 C5]
gi|354915681|gb|EHF75657.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-4632 C3]
gi|354918187|gb|EHF78144.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-4632 C4]
gi|429346014|gb|EKY82795.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-02033-1]
gi|429349862|gb|EKY86598.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-02092]
gi|429360988|gb|EKY97645.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-02030]
gi|429362419|gb|EKY99066.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-02093]
gi|429363378|gb|EKZ00020.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-02281]
gi|429365808|gb|EKZ02420.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-02318]
gi|429376663|gb|EKZ13191.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-02913]
gi|429380705|gb|EKZ17194.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-03943]
gi|429381151|gb|EKZ17639.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-03439]
gi|429392926|gb|EKZ29325.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. 11-04080]
gi|429405956|gb|EKZ42218.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. Ec11-4984]
gi|429407571|gb|EKZ43823.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. Ec11-9990]
gi|429410987|gb|EKZ47203.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. Ec11-9450]
gi|429414253|gb|EKZ50428.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. Ec11-4987]
gi|429422432|gb|EKZ58551.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. Ec11-4986]
gi|429429196|gb|EKZ65265.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. Ec11-5604]
gi|429432865|gb|EKZ68901.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. Ec11-4988]
gi|429436089|gb|EKZ72105.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. Ec11-5603]
gi|429438294|gb|EKZ74287.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. Ec11-6006]
gi|429447913|gb|EKZ83830.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. Ec12-0465]
gi|429451633|gb|EKZ87521.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. Ec11-9941]
gi|429457577|gb|EKZ93415.1| exodeoxyribonuclease I [Escherichia coli O104:H4 str. Ec12-0466]
Length = 475
Score = 323 bits (829), Expect = 3e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|386618414|ref|YP_006137994.1| Exonuclease I [Escherichia coli NA114]
gi|432422366|ref|ZP_19664912.1| exodeoxyribonuclease I [Escherichia coli KTE178]
gi|432476235|ref|ZP_19718235.1| exodeoxyribonuclease I [Escherichia coli KTE208]
gi|432559268|ref|ZP_19795938.1| exodeoxyribonuclease I [Escherichia coli KTE49]
gi|333968915|gb|AEG35720.1| Exonuclease I [Escherichia coli NA114]
gi|430944479|gb|ELC64575.1| exodeoxyribonuclease I [Escherichia coli KTE178]
gi|431006176|gb|ELD21183.1| exodeoxyribonuclease I [Escherichia coli KTE208]
gi|431091119|gb|ELD96867.1| exodeoxyribonuclease I [Escherichia coli KTE49]
Length = 475
Score = 323 bits (829), Expect = 3e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVILVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|238895590|ref|YP_002920325.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
gi|386035623|ref|YP_005955536.1| exonuclease I [Klebsiella pneumoniae KCTC 2242]
gi|402779901|ref|YP_006635447.1| exodeoxyribonuclease I [Klebsiella pneumoniae subsp. pneumoniae
1084]
gi|424831415|ref|ZP_18256143.1| exodeoxyribonuclease I [Klebsiella pneumoniae subsp. pneumoniae
Ecl8]
gi|238547907|dbj|BAH64258.1| exodeoxyribonuclease I [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|339762751|gb|AEJ98971.1| exonuclease I [Klebsiella pneumoniae KCTC 2242]
gi|402540831|gb|AFQ64980.1| Exodeoxyribonuclease I [Klebsiella pneumoniae subsp. pneumoniae
1084]
gi|414708849|emb|CCN30553.1| exodeoxyribonuclease I [Klebsiella pneumoniae subsp. pneumoniae
Ecl8]
Length = 474
Score = 323 bits (829), Expect = 3e-85, Method: Composition-based stats.
Identities = 165/429 (38%), Positives = 245/429 (57%), Gaps = 7/429 (1%)
Query: 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKIT 372
FL++DYETFG + DRP QFAAIRTD LN + P + YCKPA D+LP P+A +IT IT
Sbjct: 10 FLFHDYETFGTSPSLDRPAQFAAIRTDAELNVLGEPEVFYCKPADDYLPQPQAVMITGIT 69
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
PQ L G E FA I +F P T VGYN + FDDE+TR +F+RN +PY W++
Sbjct: 70 PQEALAKGDNEATFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRAT 492
+ SRWDL++V++A Y L P GI WP + G PSF+LEHL+ N + H+ AHDA++DV AT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGIAWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVYAT 189
Query: 493 LGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPIC 552
+ +A+L++ PRLF+++ S R K+ + I P +P +++ MF + SL+ P+
Sbjct: 190 IAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAPLA 249
Query: 553 IHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIVI 610
HP N+N +I +L D L D + +R+ L + + PI ++HLN+ P V+
Sbjct: 250 WHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDLPAAPIKLVHLNKCP-VL 308
Query: 611 SNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL-ELNIDEE 669
+ L R + +N A + N + +K+ Y + N+D +
Sbjct: 309 AQANTLRPQDADRLGISIQRCLEN---AQLLRANPQVREKVVAVYAEAEPFVPSENVDAQ 365
Query: 670 LYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKR 729
LYN F S D + I+ P+ L ++ F ++++E L+F YRARNF TL E +R
Sbjct: 366 LYNGFFSDADRAAMKIVLETEPRNLPALDITFADQRIERLLFNYRARNFPGTLDEHEQQR 425
Query: 730 WKKYRISRF 738
W ++R F
Sbjct: 426 WLEHRRQVF 434
>gi|152971008|ref|YP_001336117.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
gi|150955857|gb|ABR77887.1| 3' --> 5' specific exonuclease I [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
Length = 474
Score = 323 bits (829), Expect = 3e-85, Method: Composition-based stats.
Identities = 165/429 (38%), Positives = 245/429 (57%), Gaps = 7/429 (1%)
Query: 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKIT 372
FL++DYETFG + DRP QFAAIRTD LN + P + YCKPA D+LP P+A +IT IT
Sbjct: 10 FLFHDYETFGTSPSLDRPAQFAAIRTDAELNVLGEPEVFYCKPADDYLPQPQAVMITGIT 69
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
PQ L G E FA I +F P T VGYN + FDDE+TR +F+RN +PY W++
Sbjct: 70 PQEALAKGDNEATFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRAT 492
+ SRWDL++V++A Y L P GI WP + G PSF+LEHL+ N + H+ AHDA++DV AT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGIAWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVYAT 189
Query: 493 LGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPIC 552
+ +A+L++ PRLF+++ S R K+ + I P +P +++ MF + SL+ P+
Sbjct: 190 IAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAPLA 249
Query: 553 IHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIVI 610
HP N+N +I +L D L D + +R+ L + + PI ++HLN+ P V+
Sbjct: 250 WHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDLPAAPIKLVHLNKCP-VL 308
Query: 611 SNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL-ELNIDEE 669
+ L R + +N A + N + +K+ Y + N+D +
Sbjct: 309 AQANTLRPQDADRLGISIQRCLEN---AQLLRANPQVREKVVAVYAEAEPFVPSENVDAQ 365
Query: 670 LYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKR 729
LYN F S D + I+ P+ L ++ F ++++E L+F YRARNF TL E +R
Sbjct: 366 LYNGFFSDADRAAMKIVLETEPRNLPALDITFADQRIERLLFNYRARNFPGTLDEHEQQR 425
Query: 730 WKKYRISRF 738
W ++R F
Sbjct: 426 WLEHRRQVF 434
>gi|422755428|ref|ZP_16809252.1| exonuclease [Escherichia coli H263]
gi|323956180|gb|EGB51931.1| exonuclease [Escherichia coli H263]
Length = 474
Score = 323 bits (829), Expect = 3e-85, Method: Composition-based stats.
Identities = 165/431 (38%), Positives = 249/431 (57%), Gaps = 7/431 (1%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDLELNID 667
V++ L R + N+K + N + +K+ + + N+D
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSENVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y E
Sbjct: 364 AQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQ 423
Query: 728 KRWKKYRISRF 738
+RW ++R F
Sbjct: 424 QRWLEHRRQVF 434
>gi|110642225|ref|YP_669955.1| exonuclease I [Escherichia coli 536]
gi|161486193|ref|NP_754426.2| exonuclease I [Escherichia coli CFT073]
gi|191170056|ref|ZP_03031610.1| exodeoxyribonuclease I [Escherichia coli F11]
gi|227887062|ref|ZP_04004867.1| exodeoxyribonuclease I [Escherichia coli 83972]
gi|386599890|ref|YP_006101396.1| exodeoxyribonuclease I [Escherichia coli IHE3034]
gi|386639589|ref|YP_006106387.1| C-terminal part of exodeoxyribonuclease I, partial [Escherichia
coli ABU 83972]
gi|422837993|ref|ZP_16885966.1| exodeoxyribonuclease I [Escherichia coli H397]
gi|432412225|ref|ZP_19654888.1| exodeoxyribonuclease I [Escherichia coli KTE39]
gi|432457123|ref|ZP_19699308.1| exodeoxyribonuclease I [Escherichia coli KTE201]
gi|432471384|ref|ZP_19713431.1| exodeoxyribonuclease I [Escherichia coli KTE206]
gi|432496119|ref|ZP_19737915.1| exodeoxyribonuclease I [Escherichia coli KTE214]
gi|432504846|ref|ZP_19746571.1| exodeoxyribonuclease I [Escherichia coli KTE220]
gi|432569096|ref|ZP_19805609.1| exodeoxyribonuclease I [Escherichia coli KTE53]
gi|432588344|ref|ZP_19824700.1| exodeoxyribonuclease I [Escherichia coli KTE58]
gi|432651572|ref|ZP_19887327.1| exodeoxyribonuclease I [Escherichia coli KTE87]
gi|432713796|ref|ZP_19948837.1| exodeoxyribonuclease I [Escherichia coli KTE8]
gi|432754825|ref|ZP_19989375.1| exodeoxyribonuclease I [Escherichia coli KTE22]
gi|432778956|ref|ZP_20013199.1| exodeoxyribonuclease I [Escherichia coli KTE59]
gi|432783965|ref|ZP_20018145.1| exodeoxyribonuclease I [Escherichia coli KTE63]
gi|432787902|ref|ZP_20022034.1| exodeoxyribonuclease I [Escherichia coli KTE65]
gi|432821339|ref|ZP_20055031.1| exodeoxyribonuclease I [Escherichia coli KTE118]
gi|432827484|ref|ZP_20061136.1| exodeoxyribonuclease I [Escherichia coli KTE123]
gi|432974161|ref|ZP_20163000.1| exodeoxyribonuclease I [Escherichia coli KTE209]
gi|432995753|ref|ZP_20184359.1| exodeoxyribonuclease I [Escherichia coli KTE218]
gi|433000322|ref|ZP_20188848.1| exodeoxyribonuclease I [Escherichia coli KTE223]
gi|433008008|ref|ZP_20196425.1| exodeoxyribonuclease I [Escherichia coli KTE229]
gi|433058535|ref|ZP_20245581.1| exodeoxyribonuclease I [Escherichia coli KTE124]
gi|433078190|ref|ZP_20264731.1| exodeoxyribonuclease I [Escherichia coli KTE131]
gi|433087693|ref|ZP_20274065.1| exodeoxyribonuclease I [Escherichia coli KTE137]
gi|433115946|ref|ZP_20301740.1| exodeoxyribonuclease I [Escherichia coli KTE153]
gi|433125597|ref|ZP_20311159.1| exodeoxyribonuclease I [Escherichia coli KTE160]
gi|433139686|ref|ZP_20324942.1| exodeoxyribonuclease I [Escherichia coli KTE167]
gi|433149583|ref|ZP_20334607.1| exodeoxyribonuclease I [Escherichia coli KTE174]
gi|433163842|ref|ZP_20348581.1| exodeoxyribonuclease I [Escherichia coli KTE179]
gi|433168954|ref|ZP_20353582.1| exodeoxyribonuclease I [Escherichia coli KTE180]
gi|442607782|ref|ZP_21022542.1| Exodeoxyribonuclease I [Escherichia coli Nissle 1917]
gi|110343817|gb|ABG70054.1| exodeoxyribonuclease I [Escherichia coli 536]
gi|190909572|gb|EDV69157.1| exodeoxyribonuclease I [Escherichia coli F11]
gi|227835412|gb|EEJ45878.1| exodeoxyribonuclease I [Escherichia coli 83972]
gi|294493683|gb|ADE92439.1| exodeoxyribonuclease I [Escherichia coli IHE3034]
gi|307554081|gb|ADN46856.1| C-terminal part of exodeoxyribonuclease I [Escherichia coli ABU
83972]
gi|371602418|gb|EHN91121.1| exodeoxyribonuclease I [Escherichia coli H397]
gi|430934632|gb|ELC54979.1| exodeoxyribonuclease I [Escherichia coli KTE39]
gi|430982223|gb|ELC98927.1| exodeoxyribonuclease I [Escherichia coli KTE201]
gi|430998602|gb|ELD14843.1| exodeoxyribonuclease I [Escherichia coli KTE206]
gi|431023377|gb|ELD36572.1| exodeoxyribonuclease I [Escherichia coli KTE214]
gi|431038333|gb|ELD49231.1| exodeoxyribonuclease I [Escherichia coli KTE220]
gi|431100131|gb|ELE05143.1| exodeoxyribonuclease I [Escherichia coli KTE53]
gi|431120677|gb|ELE23675.1| exodeoxyribonuclease I [Escherichia coli KTE58]
gi|431190632|gb|ELE90029.1| exodeoxyribonuclease I [Escherichia coli KTE87]
gi|431257599|gb|ELF50523.1| exodeoxyribonuclease I [Escherichia coli KTE8]
gi|431302034|gb|ELF91222.1| exodeoxyribonuclease I [Escherichia coli KTE22]
gi|431327109|gb|ELG14454.1| exodeoxyribonuclease I [Escherichia coli KTE59]
gi|431329170|gb|ELG16470.1| exodeoxyribonuclease I [Escherichia coli KTE63]
gi|431337619|gb|ELG24707.1| exodeoxyribonuclease I [Escherichia coli KTE65]
gi|431368186|gb|ELG54654.1| exodeoxyribonuclease I [Escherichia coli KTE118]
gi|431372733|gb|ELG58395.1| exodeoxyribonuclease I [Escherichia coli KTE123]
gi|431489022|gb|ELH68650.1| exodeoxyribonuclease I [Escherichia coli KTE209]
gi|431506134|gb|ELH84737.1| exodeoxyribonuclease I [Escherichia coli KTE218]
gi|431509337|gb|ELH87607.1| exodeoxyribonuclease I [Escherichia coli KTE223]
gi|431523338|gb|ELI00475.1| exodeoxyribonuclease I [Escherichia coli KTE229]
gi|431568790|gb|ELI41752.1| exodeoxyribonuclease I [Escherichia coli KTE124]
gi|431596821|gb|ELI66763.1| exodeoxyribonuclease I [Escherichia coli KTE131]
gi|431604711|gb|ELI74113.1| exodeoxyribonuclease I [Escherichia coli KTE137]
gi|431634159|gb|ELJ02413.1| exodeoxyribonuclease I [Escherichia coli KTE153]
gi|431645470|gb|ELJ13024.1| exodeoxyribonuclease I [Escherichia coli KTE160]
gi|431659999|gb|ELJ26887.1| exodeoxyribonuclease I [Escherichia coli KTE167]
gi|431670863|gb|ELJ37158.1| exodeoxyribonuclease I [Escherichia coli KTE174]
gi|431687704|gb|ELJ53247.1| exodeoxyribonuclease I [Escherichia coli KTE179]
gi|431687806|gb|ELJ53347.1| exodeoxyribonuclease I [Escherichia coli KTE180]
gi|441710387|emb|CCQ08519.1| Exodeoxyribonuclease I [Escherichia coli Nissle 1917]
Length = 475
Score = 323 bits (829), Expect = 3e-85, Method: Composition-based stats.
Identities = 165/431 (38%), Positives = 249/431 (57%), Gaps = 7/431 (1%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDLELNID 667
V++ L R + N+K + N + +K+ + + N+D
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSENVD 364
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y E
Sbjct: 365 AQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQ 424
Query: 728 KRWKKYRISRF 738
+RW ++R F
Sbjct: 425 QRWLEHRRQVF 435
>gi|331673547|ref|ZP_08374310.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli TA280]
gi|331068820|gb|EGI40212.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli TA280]
Length = 491
Score = 323 bits (829), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 171/455 (37%), Positives = 262/455 (57%), Gaps = 15/455 (3%)
Query: 292 NSIKKIGNYYIDILLHNG--NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPI 349
+++ N ++++++G STFL++DYETFG + DRP QFAAIRTD N I P
Sbjct: 4 DTLADSRNNGFNLMMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPE 63
Query: 350 MLYCKPAPDFLPDPRACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILF 409
+ YCKPA D+LP P A LIT ITPQ G E FA+ I +F P T +GYN + F
Sbjct: 64 VFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRF 123
Query: 410 DDEITRFMFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLE 469
DDE+TR +F+RN +PY W+++ SRWDL++V++A Y L P GI WP ++G PSF+LE
Sbjct: 124 DDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLE 183
Query: 470 HLSFVNNLSHKKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIAR 529
HL+ N + H AHDA++DV AT+ +A+L++ PRLF+++ + R K ++A I P
Sbjct: 184 HLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMN 243
Query: 530 PFFYITHMFSSKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKK 589
P +++ MF + S + P+ HP N+N +I +L D L D + +R+ L K
Sbjct: 244 PLVHVSGMFGAWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAK 303
Query: 590 NSFKED--IPISMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYI 647
++ +P+ ++H+N+ P V++ L R + N+K + N +
Sbjct: 304 TDLGDNAAVPVKLVHINKCP-VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQV 359
Query: 648 WKK---IFLDYK-INNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFEN 703
+K IF + + SD N+D +LYN F S D + I+ P+ L ++ F +
Sbjct: 360 REKVVAIFAEAEPFTPSD---NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD 416
Query: 704 KKLEELIFLYRARNFIETLSYKELKRWKKYRISRF 738
K++E+L+F YRARNF TL Y E +RW ++R F
Sbjct: 417 KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVF 451
>gi|389808058|ref|ZP_10204468.1| exonuclease I [Rhodanobacter thiooxydans LCS2]
gi|388442936|gb|EIL99095.1| exonuclease I [Rhodanobacter thiooxydans LCS2]
Length = 484
Score = 323 bits (829), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 170/484 (35%), Positives = 261/484 (53%), Gaps = 18/484 (3%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
TF W+DYET G + RRDRP QFA IRT L + P+M Y +P+ + P P ACLIT
Sbjct: 2 QTFFWHDYETSGADPRRDRPLQFAGIRTTPELEIVGEPVMFYGQPSREMPPHPDACLITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G+ E +FA+ + + PGT VGYN++ FDDE TR M +RN PY REW
Sbjct: 62 ITPQQAEREGLGEAEFAARVHEQLAAPGTCGVGYNSLRFDDEFTRQMLYRNFHEPYGREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+N SRWDLI++++ L P GI WP + +G PSFKLEHL+ N L+ ++AHDALSDVR
Sbjct: 122 ENGNSRWDLIDLVRMCQALRPEGIVWPTREDGSPSFKLEHLASANGLTQERAHDALSDVR 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
A + LARLIR PRL+++ +LR+K+ V + P +++ + + ++++ P
Sbjct: 182 ALIELARLIRVRQPRLWDWYYALRRKQKVFELLDVVNMTPLVHVSSRYPASRHCLAVIAP 241
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP +I ++L DP +L D ++I D + + ED IP+ + NR+P
Sbjct: 242 LAAHPSRPGEVIVYDLATDPAAWLALDEDEIADRIFTARADLPEDVERIPLRTVRANRAP 301
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
++ L VL + R + DL + ++ +++F ++L D
Sbjct: 302 -ALAPLSVLQGVDLDRLQLDLARCQAHHDVLHAVDGLAEKLRRVFQ----RAAELPPPED 356
Query: 668 EELY---NNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
EL F+ D LA +R+ P++L +F F + + EL+F YRARN+ ETL
Sbjct: 357 PELALYGGGFLPDADKRLLAQVRATPPRELGTRSFPFRDPRYPELLFRYRARNWPETLDA 416
Query: 725 KELKRWKKYRISRFYNKKN-NLYNINMFYLEIESLLKKANEHDT-KILNALLMYGK---- 778
+E RW+ +R +R + ++ ++ + L D +L+ L +G+
Sbjct: 417 EEYARWENFRRARLTTRTPLTGLTLDDYFARLAELRHAPQAQDKLPLLDQLQAWGEQLAA 476
Query: 779 -IDG 781
IDG
Sbjct: 477 SIDG 480
>gi|378979689|ref|YP_005227830.1| exodeoxyribonuclease I [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|364519100|gb|AEW62228.1| exodeoxyribonuclease I [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
Length = 474
Score = 323 bits (829), Expect = 3e-85, Method: Composition-based stats.
Identities = 165/429 (38%), Positives = 245/429 (57%), Gaps = 7/429 (1%)
Query: 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKIT 372
FL++DYETFG + DRP QFAAIRTD LN + P + YCKPA D+LP P+A +IT IT
Sbjct: 10 FLFHDYETFGTSPSLDRPAQFAAIRTDAELNVLGEPEVFYCKPADDYLPQPQAVMITGIT 69
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
PQ L G E FA I +F P T VGYN + FDDE+TR +F+RN +PY W++
Sbjct: 70 PQEALAKGDNEAAFARRIHDLFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRAT 492
+ SRWDL++V++A Y L P GI WP + G PSF+LEHL+ N + H+ AHDA++DV AT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGIAWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVYAT 189
Query: 493 LGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPIC 552
+ +A+L++ PRLF+++ S R K+ + I P +P +++ MF + SL+ P+
Sbjct: 190 IAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAPLA 249
Query: 553 IHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIVI 610
HP N+N +I +L D L D + +R+ L + + PI ++HLN+ P V+
Sbjct: 250 WHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDLPAAPIKLVHLNKCP-VL 308
Query: 611 SNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL-ELNIDEE 669
+ L R + +N A + N + +K+ Y + N+D +
Sbjct: 309 AQANTLRPQDADRLGISIQRCLEN---AQLLRANPQVREKVVAVYAEAEPFVPSENVDAQ 365
Query: 670 LYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKR 729
LYN F S D + I+ P+ L ++ F ++++E L+F YRARNF TL E +R
Sbjct: 366 LYNGFFSDADRAAMKIVLETEPRNLPALDITFADQRIERLLFNYRARNFPGTLDEHEQQR 425
Query: 730 WKKYRISRF 738
W ++R F
Sbjct: 426 WLEHRRQVF 434
>gi|336316617|ref|ZP_08571509.1| exonuclease I [Rheinheimera sp. A13L]
gi|335879082|gb|EGM76989.1| exonuclease I [Rheinheimera sp. A13L]
Length = 469
Score = 323 bits (829), Expect = 3e-85, Method: Composition-based stats.
Identities = 179/463 (38%), Positives = 266/463 (57%), Gaps = 12/463 (2%)
Query: 322 GLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKITPQFCLNNGI 381
GL +++RP QF IRTD+ LN I P M YC+ A D+LP P A LIT +TPQ C G+
Sbjct: 7 GLIQKKNRPAQFGGIRTDLDLNPIGEPDMWYCQLANDYLPHPVAALITGLTPQLCNQKGL 66
Query: 382 PEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKNNCSRWDLIN 441
PE +F I + F +P T +GYN++ FDDE+TR+ +RN PY RE ++ SRWDLI+
Sbjct: 67 PETEFCRRILEKFSQPNTCVLGYNSLRFDDEVTRYSLYRNFYEPYGRESQHGNSRWDLID 126
Query: 442 VIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRATLGLARLIRN 501
+++A Y L P GI WP K +G PSFKLE L+ N LSH++AHDALSDV AT+ +A+L++
Sbjct: 127 IVRACYALRPEGIVWPEKADGSPSFKLEDLTKANGLSHQRAHDALSDVYATIAIAKLVKE 186
Query: 502 NNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPICIHPMNKNIL 561
P+LF ++L LRKK V P +++ F + +S + P+ HP NKN +
Sbjct: 187 KQPKLFQYLLDLRKKTEVSKLFDLVNLTPLVHVSGRFPAIQGCVSWIVPLAPHPTNKNAV 246
Query: 562 ITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPIVISNLKVLSS 618
I +NL DPK L D+ ++ L K ED + + +IH+N+ P V+S K LS
Sbjct: 247 ICYNLQADPKPLLELDLACLQQLLYTKTADLDEDQQRLGLKLIHINKCP-VLSPAKTLSE 305
Query: 619 NLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKI-NNSDLELNIDEELYNNFISK 677
D +++ N + I K+ Y++ + +E N D +LYN F+S
Sbjct: 306 QRAADLGIDRAACLQHLDWLRQ--NRSAIQPKVMELYQLPTDYTVETNPDYQLYNGFVSN 363
Query: 678 KDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKRWKKYRISR 737
+D ++ L MS +L++ F +L +L+FLYRARN+ ++L+ +E +RW++YR +
Sbjct: 364 EDKQRMEQLHLMSADQLASNPVLFSEDRLNQLLFLYRARNYPQSLTDQEQQRWQRYRSDK 423
Query: 738 FYN--KKNNLYNINMFYLEIESLLKKANEHDTK--ILNALLMY 776
+ K NL F L +E+L +A + K IL AL Y
Sbjct: 424 LTHGLDKPNL-TFEEFGLALENLAHEAGDDVKKMNILKALFQY 465
>gi|387607712|ref|YP_006096568.1| exodeoxyribonuclease I [Escherichia coli 042]
gi|284922012|emb|CBG35090.1| exodeoxyribonuclease I [Escherichia coli 042]
Length = 491
Score = 323 bits (829), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 178/497 (35%), Positives = 281/497 (56%), Gaps = 22/497 (4%)
Query: 292 NSIKKIGNYYIDILLHNG--NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPI 349
+++ N ++++++G STFL++DYETFG + DRP QFAAIRTD N I P
Sbjct: 4 DTLADSRNNGFNLMMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGKPE 63
Query: 350 MLYCKPAPDFLPDPRACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILF 409
+ YCKPA D+LP P A LIT ITPQ G E FA+ I +F P T +GYN + F
Sbjct: 64 VFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRF 123
Query: 410 DDEITRFMFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLE 469
DDE+TR +F+RN +PY W+++ SRWDL++V++A Y L P GI WP ++G PSF+LE
Sbjct: 124 DDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLE 183
Query: 470 HLSFVNNLSHKKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIAR 529
HL+ N + H AHDA++DV AT+ +A+L++ PRLF+++ + R K ++A I P +
Sbjct: 184 HLTKANGIEHSNAHDAMADVYATISMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMK 243
Query: 530 PFFYITHMFSSKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKK 589
P +++ MF + S + P+ HP N+N +I +L D L D + +R+ L K
Sbjct: 244 PLVHVSGMFGAWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAK 303
Query: 590 NSFKED--IPISMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYI 647
++ +P+ ++H+N+ P V++ L R + N+K + N +
Sbjct: 304 TDLGDNAAVPVKLVHINKCP-VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQV 359
Query: 648 WKK---IFLDYK-INNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFEN 703
+K IF + + SD N+D +LYN F S D + I+ P+ L ++ F +
Sbjct: 360 REKVVAIFAEAEPFTPSD---NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD 416
Query: 704 KKLEELIFLYRARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKAN 763
K++E+L+F YRARNF TL Y E +RW ++R F + + + E++ L+++
Sbjct: 417 KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEF-----LQGYADELQMLVQQYA 471
Query: 764 EHDTKI--LNALLMYGK 778
+ K+ L AL Y +
Sbjct: 472 DDKEKVTLLKALWQYAE 488
>gi|425288959|ref|ZP_18679815.1| exonuclease [Escherichia coli 3006]
gi|408214253|gb|EKI38702.1| exonuclease [Escherichia coli 3006]
Length = 474
Score = 323 bits (829), Expect = 3e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNLIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 188 ATIAMAKLVKMRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 361 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 420
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 421 AEQQRWLEHRRQVF 434
>gi|237704470|ref|ZP_04534951.1| exodeoxyribonuclease I [Escherichia sp. 3_2_53FAA]
gi|300974061|ref|ZP_07172435.1| exonuclease [Escherichia coli MS 200-1]
gi|300986935|ref|ZP_07177911.1| exonuclease [Escherichia coli MS 45-1]
gi|386629804|ref|YP_006149524.1| exonuclease I [Escherichia coli str. 'clone D i2']
gi|386634724|ref|YP_006154443.1| exonuclease I [Escherichia coli str. 'clone D i14']
gi|422360570|ref|ZP_16441204.1| exonuclease [Escherichia coli MS 110-3]
gi|422361998|ref|ZP_16442579.1| exonuclease [Escherichia coli MS 153-1]
gi|422372862|ref|ZP_16453202.1| exonuclease [Escherichia coli MS 60-1]
gi|26108790|gb|AAN80993.1|AE016762_246 Exodeoxyribonuclease I [Escherichia coli CFT073]
gi|226900836|gb|EEH87095.1| exodeoxyribonuclease I [Escherichia sp. 3_2_53FAA]
gi|300308958|gb|EFJ63478.1| exonuclease [Escherichia coli MS 200-1]
gi|300407821|gb|EFJ91359.1| exonuclease [Escherichia coli MS 45-1]
gi|315285605|gb|EFU45047.1| exonuclease [Escherichia coli MS 110-3]
gi|315295233|gb|EFU54568.1| exonuclease [Escherichia coli MS 153-1]
gi|324015752|gb|EGB84971.1| exonuclease [Escherichia coli MS 60-1]
gi|355420703|gb|AER84900.1| exonuclease I [Escherichia coli str. 'clone D i2']
gi|355425623|gb|AER89819.1| exonuclease I [Escherichia coli str. 'clone D i14']
Length = 491
Score = 323 bits (829), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 166/441 (37%), Positives = 256/441 (58%), Gaps = 9/441 (2%)
Query: 303 DILLHNG--NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFL 360
++++++G STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+L
Sbjct: 15 NLMMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYL 74
Query: 361 PDPRACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWR 420
P P A LIT ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+R
Sbjct: 75 PQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYR 134
Query: 421 NLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHK 480
N +PY W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H
Sbjct: 135 NFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHS 194
Query: 481 KAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSS 540
AHDA++DV AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF +
Sbjct: 195 NAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGA 254
Query: 541 KHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPI 598
S + P+ HP N+N +I +L D L D + +R+ L K ++ +P+
Sbjct: 255 WRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPV 314
Query: 599 SMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KI 657
++H+N+ P V++ L R + N+K + N + +K+ + +
Sbjct: 315 KLVHINKCP-VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEA 370
Query: 658 NNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARN 717
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARN
Sbjct: 371 EPFTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARN 430
Query: 718 FIETLSYKELKRWKKYRISRF 738
F TL Y E +RW ++R F
Sbjct: 431 FPGTLDYAEQQRWLEHRRQVF 451
>gi|387126759|ref|YP_006295364.1| Exodeoxyribonuclease I [Methylophaga sp. JAM1]
gi|386273821|gb|AFI83719.1| Exodeoxyribonuclease I [Methylophaga sp. JAM1]
Length = 480
Score = 323 bits (829), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 156/426 (36%), Positives = 245/426 (57%), Gaps = 7/426 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
T W+DYET G + R DRP QFA +RTD LN I P+M+YCKPA D LP P A LIT I
Sbjct: 3 TLYWHDYETTGTDPRFDRPLQFAGVRTDEDLNIIGEPLMIYCKPAADVLPHPMASLITGI 62
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L +G+ E +F +I + KPGT VGYN++ FDDE TRF +RN + Y REW+
Sbjct: 63 TPQKALQDGLTEAEFIKVIHQELSKPGTCGVGYNSLRFDDEFTRFALFRNFYDAYAREWQ 122
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD+I++++ L P GI WP + +G PSF+LE L+ N + H+ AHDAL DV A
Sbjct: 123 NGNSRWDIIDMVRLTRALRPEGIEWPNREDGLPSFRLEALTAANGIEHQGAHDALVDVHA 182
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+LI++ P+L+++I LR+K+ + + A P + + M+ S++ +L+ PI
Sbjct: 183 TIALAKLIKDRQPKLYDYIYQLRRKQQLAPLLNLHHADPVLHTSRMYPSEYCNTALVMPI 242
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLNRSPI 608
P N N ++ ++L HDP L D + IR +L E + +H+N+ P+
Sbjct: 243 AKEPNNNNGVVVYDLRHDPSALLEQDADTIRQWLFTPTRDLPEGASRPALKTVHINKCPV 302
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
++ L R + D + K+++ + +K+ + + D ++D
Sbjct: 303 IVP-AATLDDAAAERLQIDRELSHKHLQLLREA--GESLQQKLQTVFSQKSFDEIDDVDA 359
Query: 669 ELY-NNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY F D K+ ++R +P +L ++ F + +L E++F YRARN+ E+L+ E
Sbjct: 360 SLYGGGFFDDGDKNKMTLIREAAPDQLGTLSIPFNDPRLPEMLFRYRARNWPESLNESEA 419
Query: 728 KRWKKY 733
++W+++
Sbjct: 420 EQWQQF 425
>gi|336251136|ref|YP_004594846.1| exonuclease I [Enterobacter aerogenes KCTC 2190]
gi|334737192|gb|AEG99567.1| exonuclease I [Enterobacter aerogenes KCTC 2190]
Length = 473
Score = 323 bits (829), Expect = 4e-85, Method: Composition-based stats.
Identities = 170/440 (38%), Positives = 252/440 (57%), Gaps = 14/440 (3%)
Query: 306 LHNG-NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPR 364
+ NG +FL++DYETFG + DRP QFAAIRTD LN I P + YCKPA D+LP P+
Sbjct: 1 MKNGEQQSFLFHDYETFGTSPSLDRPAQFAAIRTDSDLNVIGEPEVFYCKPADDYLPQPQ 60
Query: 365 ACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLIN 424
A +IT ITPQ L G E FA I +F P T VGYN + FDDE++R +F+RN +
Sbjct: 61 AVMITGITPQEALAKGDNEAAFARRINDLFTVPKTCIVGYNNVRFDDEVSRNIFYRNFYD 120
Query: 425 PYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHD 484
PY W+++ SRWDL++V++A Y L P GI WP +G PSF+LEHL+ N + H AHD
Sbjct: 121 PYAWSWQHDNSRWDLLDVMRACYALRPEGINWPQNEDGLPSFRLEHLTVANGIEHSNAHD 180
Query: 485 ALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSY 544
A++DV AT+ +A+L++ + PRLF+++ S R K+ + I P +P +++ MF +
Sbjct: 181 AMADVYATIAMAKLVKTHQPRLFDYLYSHRNKRKLATLIDVPQLKPLVHVSGMFGAARGN 240
Query: 545 ISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNS--FKEDIPISMIH 602
SL+ P+ HP N+N +I +L D L D + +R+ L ++ + PI ++H
Sbjct: 241 TSLVAPLAWHPDNRNAVIMVDLAGDMSPLLELDADTLRERLYTPRDELGYLPAAPIKLVH 300
Query: 603 LNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINN--- 659
LN+ P V++ L R + +N A + N + +K+ Y
Sbjct: 301 LNKCP-VLAQANTLRPQDADRLGINTQRCLEN---AQLLRANPQVREKVVALYAEAEPFV 356
Query: 660 -SDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNF 718
SD N+D +LYN F S D + I+ P+ L ++ F +K++E L+F YRARNF
Sbjct: 357 PSD---NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFADKRIERLLFNYRARNF 413
Query: 719 IETLSYKELKRWKKYRISRF 738
TL E +RW ++R + F
Sbjct: 414 PGTLDENEQQRWLEHRRNVF 433
>gi|432450124|ref|ZP_19692390.1| exodeoxyribonuclease I [Escherichia coli KTE193]
gi|433033802|ref|ZP_20221521.1| exodeoxyribonuclease I [Escherichia coli KTE112]
gi|430980247|gb|ELC97009.1| exodeoxyribonuclease I [Escherichia coli KTE193]
gi|431551779|gb|ELI25749.1| exodeoxyribonuclease I [Escherichia coli KTE112]
Length = 475
Score = 323 bits (829), Expect = 4e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 249/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNLIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K + +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGNNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|301648514|ref|ZP_07248238.1| exonuclease [Escherichia coli MS 146-1]
gi|301073417|gb|EFK88223.1| exonuclease [Escherichia coli MS 146-1]
Length = 491
Score = 323 bits (829), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 171/444 (38%), Positives = 259/444 (58%), Gaps = 15/444 (3%)
Query: 303 DILLHNG--NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFL 360
++++++G STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+L
Sbjct: 15 NLMMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYL 74
Query: 361 PDPRACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWR 420
P P A LIT ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+R
Sbjct: 75 PQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYR 134
Query: 421 NLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHK 480
N +PY W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H
Sbjct: 135 NFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHS 194
Query: 481 KAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSS 540
AHDA++DV AT+ LA+L++ PRLF+++ + R K ++A I P +P +++ MF +
Sbjct: 195 NAHDAMADVYATIALAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGA 254
Query: 541 KHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPI 598
S + P+ HP N+N +I +L D L D + +R+ L K ++ +P+
Sbjct: 255 WRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTVKADLGDNAAVPV 314
Query: 599 SMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDY 655
++H+N+ P V++ L R + N+K + N + +K IF +
Sbjct: 315 KLVHINKCP-VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEA 370
Query: 656 K-INNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYR 714
+ SD N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YR
Sbjct: 371 EPFTPSD---NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYR 427
Query: 715 ARNFIETLSYKELKRWKKYRISRF 738
ARNF TL Y E +RW ++R F
Sbjct: 428 ARNFPGTLDYAEQQRWLEHRRQVF 451
>gi|432436737|ref|ZP_19679125.1| exodeoxyribonuclease I [Escherichia coli KTE188]
gi|432524209|ref|ZP_19761337.1| exodeoxyribonuclease I [Escherichia coli KTE230]
gi|433212922|ref|ZP_20396513.1| exodeoxyribonuclease I [Escherichia coli KTE99]
gi|430962068|gb|ELC79925.1| exodeoxyribonuclease I [Escherichia coli KTE188]
gi|431051325|gb|ELD60988.1| exodeoxyribonuclease I [Escherichia coli KTE230]
gi|431734530|gb|ELJ97929.1| exodeoxyribonuclease I [Escherichia coli KTE99]
Length = 475
Score = 323 bits (829), Expect = 4e-85, Method: Composition-based stats.
Identities = 165/431 (38%), Positives = 249/431 (57%), Gaps = 7/431 (1%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDIPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDLELNID 667
V++ L R + N+K + N + +K+ + + N+D
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSENVD 364
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y E
Sbjct: 365 AQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQ 424
Query: 728 KRWKKYRISRF 738
+RW ++R F
Sbjct: 425 QRWLEHRRQVF 435
>gi|417126550|ref|ZP_11974104.1| exodeoxyribonuclease I [Escherichia coli 97.0246]
gi|386144800|gb|EIG91264.1| exodeoxyribonuclease I [Escherichia coli 97.0246]
Length = 474
Score = 323 bits (829), Expect = 4e-85, Method: Composition-based stats.
Identities = 168/433 (38%), Positives = 252/433 (58%), Gaps = 13/433 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT I
Sbjct: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P+
Sbjct: 189 TIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P V
Sbjct: 249 AWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYK-INNSDLELN 665
++ L R + N+K + N + +K IF++ + SD N
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFVEAEPFTPSD---N 361
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 VDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYA 421
Query: 726 ELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 EQQRWLEHRRQVF 434
>gi|417662633|ref|ZP_12312214.1| exodeoxyribonuclease 1 [Escherichia coli AA86]
gi|330911851|gb|EGH40361.1| exodeoxyribonuclease 1 [Escherichia coli AA86]
Length = 475
Score = 323 bits (829), Expect = 4e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLIALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|113461015|ref|YP_719082.1| exonuclease I [Haemophilus somnus 129PT]
gi|112823058|gb|ABI25147.1| Exodeoxyribonuclease I subunit C [Haemophilus somnus 129PT]
Length = 486
Score = 323 bits (829), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 171/441 (38%), Positives = 253/441 (57%), Gaps = 13/441 (2%)
Query: 301 YIDILLHNGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFL 360
++ L + +F YDYE+FG+N DRP QFA IRTD N I P+M YCK D+L
Sbjct: 5 FLRFLYMQNDFSFFIYDYESFGINPATDRPAQFAGIRTDQNFNIIGEPVMFYCKQTDDYL 64
Query: 361 PDPRACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWR 420
P P + L+T ITPQ C GIPE +FA I F P T +GYN + +DDE+TR+ F+R
Sbjct: 65 PSPESVLVTGITPQICNEKGIPEPEFAEKILAEFSHPNTCIMGYNNVRYDDEMTRYTFYR 124
Query: 421 NLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHK 480
N I+PYE WKN SRWDLI+V++A Y L P GI W Y ++G PSF+LE L+ VN + H
Sbjct: 125 NFIDPYEYSWKNGNSRWDLIDVVRACYALRPDGINWAYDDDGMPSFRLEKLTQVNGIEHG 184
Query: 481 KAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSS 540
AHDA++DV AT+ +A+LI+ P+LF F R K+ V I +P +++ M +
Sbjct: 185 NAHDAMADVYATIAMAKLIKQKQPKLFQFFFENRGKREVEKLIDIANMKPLVHVSGMLGN 244
Query: 541 KHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED----I 596
S + P+ HP+N+N +I +L D L ++R L K ++ +
Sbjct: 245 YRGNTSWVVPLAWHPINQNAVIVCDLAKDIDDLLAKSAVELRQNLYTPKVELEQHNILPV 304
Query: 597 PISMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIK--CASSILNNTYIWKKIFLD 654
P+ ++H+N+ PI+ +L N + D +N++ S + + I +IF D
Sbjct: 305 PLKLVHINKCPILAPAKTLLPENAT-KLGIDREFCLQNLQKLRQSPDIRDKVI--EIFHD 361
Query: 655 YK-INNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLY 713
+ + +SD N++ ELY F S D + ILR +SP+KL+ N F +K++ +L+F Y
Sbjct: 362 EREVIHSD---NVETELYKQFFSNNDKNNMTILRQLSPEKLNEHNLSFSDKRISDLLFHY 418
Query: 714 RARNFIETLSYKELKRWKKYR 734
RAR+F +TL E +W+KYR
Sbjct: 419 RARHFYKTLDRSEQIKWQKYR 439
>gi|342904223|ref|ZP_08726024.1| Exodeoxyribonuclease I [Haemophilus haemolyticus M21621]
gi|341953463|gb|EGT79967.1| Exodeoxyribonuclease I [Haemophilus haemolyticus M21621]
Length = 473
Score = 323 bits (829), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 165/427 (38%), Positives = 246/427 (57%), Gaps = 7/427 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YDYE+FG+N DRP QFA IRTD N I PIM YCK D+LP P A ++T I
Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C G+ E +FA+ I F +P T +GYN I +DDE+TR+ F+RN I+PYE WK
Sbjct: 66 TPQECNEKGLAEPEFAANILVEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI W Y ++G PSF+LE L+ N + H+ AHDA++DV A
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANAIEHENAHDAMADVYA 185
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF + R KK + + P +++ M + + + P+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMSPLVHVSGMLGNYRGNCTWVAPL 245
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLNRSP 607
HP N+N LI +L D L +++R L KK+ +E +P+ ++H+N+ P
Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLAKSADELRADLYTKKSELEERGVSSVPLKLVHINKCP 305
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
I ++ K L R D N+ + + IF + + S+ N++
Sbjct: 306 I-LAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVSDIFNEERQFESN--DNVE 362
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
ELYN F S D ++ILRS+ +KL+ FE+K++ EL+F YRAR+F +TL+ E
Sbjct: 363 TELYNGFFSNADKNNMSILRSLPAEKLAEHGLAFEDKRIPELLFHYRARHFYKTLTRAEQ 422
Query: 728 KRWKKYR 734
+W+KYR
Sbjct: 423 IKWRKYR 429
>gi|82777457|ref|YP_403806.1| exonuclease I [Shigella dysenteriae Sd197]
gi|81241605|gb|ABB62315.1| exonuclease I [Shigella dysenteriae Sd197]
Length = 475
Score = 323 bits (829), Expect = 4e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 249/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNLIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYTLRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMNPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|422355061|ref|ZP_16435782.1| exonuclease [Escherichia coli MS 117-3]
gi|324016993|gb|EGB86212.1| exonuclease [Escherichia coli MS 117-3]
Length = 499
Score = 323 bits (829), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 170/444 (38%), Positives = 259/444 (58%), Gaps = 15/444 (3%)
Query: 303 DILLHNG--NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFL 360
++++++G STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+L
Sbjct: 23 NLMMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYL 82
Query: 361 PDPRACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWR 420
P P A LIT ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+R
Sbjct: 83 PQPGAVLITGITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYR 142
Query: 421 NLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHK 480
N +PY W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H
Sbjct: 143 NFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHS 202
Query: 481 KAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSS 540
AHDA++DV AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF +
Sbjct: 203 NAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGA 262
Query: 541 KHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPI 598
S + P+ HP N+N +I +L D L D + +R+ L K ++ +P+
Sbjct: 263 WRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPV 322
Query: 599 SMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDY 655
++H+N+ P V++ L R + N+K + N + +K IF +
Sbjct: 323 KLVHINKCP-VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEA 378
Query: 656 K-INNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYR 714
+ SD N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YR
Sbjct: 379 EPFTPSD---NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYR 435
Query: 715 ARNFIETLSYKELKRWKKYRISRF 738
ARNF TL Y E +RW ++R F
Sbjct: 436 ARNFPGTLDYAEQQRWLEHRRQVF 459
>gi|238757180|ref|ZP_04618367.1| Exodeoxyribonuclease I [Yersinia aldovae ATCC 35236]
gi|238704558|gb|EEP97088.1| Exodeoxyribonuclease I [Yersinia aldovae ATCC 35236]
Length = 476
Score = 323 bits (829), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 169/477 (35%), Positives = 261/477 (54%), Gaps = 15/477 (3%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
N + TF +DYETFG DRP QFA +RTD+ N I+ P+++YC PA D+LP P A +
Sbjct: 5 NKSPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQPEAVM 64
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
IT ITPQ L NG+ E +FA I + F PGT +GYN I FDDE++R +F+RN +PY
Sbjct: 65 ITGITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYA 124
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
W+ SRWDL++V++A Y L P GI WP G PSFKLEHL+ N + H AHDA+S
Sbjct: 125 YSWQGGNSRWDLLDVMRACYALRPEGIVWPENEEGLPSFKLEHLTKANGVEHLHAHDAMS 184
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ +A+ ++ PRLF+++ R K + A I P +++ MF + S
Sbjct: 185 DVYATIAMAKRVKQAQPRLFDYLYQHRSKHKINALIDIADMTPLVHVSGMFGAARGNTSW 244
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
+ P+ HP NKN +I +L D L D N +R+ L +++ +P+ ++H+N
Sbjct: 245 VAPLAWHPENKNAVIMCDLAGDMSPLLELDSNTLRERLYTRRDKLGAQDAAVPLKLVHIN 304
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF-LDYKINNSDLE 663
+ P++ +L N R D +N++ + N + +K+ L + +
Sbjct: 305 KCPVLAPAKTLLPENAE-RLGIDRQRCLQNLQL---LRQNPQVREKVVALFAEAEPFAVS 360
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
++D +LYN F S D + I+ PK L ++ F++ +LE L+F +RARN+ TL+
Sbjct: 361 DDVDAQLYNGFFSDADRATMKIILQTEPKNLPALDLTFQDPRLEALLFRFRARNYPNTLT 420
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK--ILNALLMYGK 778
E +RW ++R N + + L++E + + K +L AL Y +
Sbjct: 421 DSEQQRWLEHRREAL-----NAEKVQAYMLQLEQFYNQYEDDKEKLALLKALFDYAR 472
>gi|444350603|ref|YP_007386747.1| Exodeoxyribonuclease I (EC 3.1.11.1) [Enterobacter aerogenes
EA1509E]
gi|443901433|emb|CCG29207.1| Exodeoxyribonuclease I (EC 3.1.11.1) [Enterobacter aerogenes
EA1509E]
Length = 480
Score = 323 bits (828), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 168/432 (38%), Positives = 249/432 (57%), Gaps = 13/432 (3%)
Query: 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKIT 372
FL++DYETFG + DRP QFAAIRTD LN I P + YCKPA D+LP P+A +IT IT
Sbjct: 16 FLFHDYETFGTSPSLDRPAQFAAIRTDSDLNVIGEPEVFYCKPADDYLPQPQAVMITGIT 75
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
PQ L G E FA I +F P T VGYN + FDDE++R +F+RN +PY W++
Sbjct: 76 PQEALAKGDNEAAFARRINDLFTVPKTCIVGYNNVRFDDEVSRNIFYRNFYDPYAWSWQH 135
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRAT 492
+ SRWDL++V++A Y L P GI WP +G PSF+LEHL+ N + H AHDA++DV AT
Sbjct: 136 DNSRWDLLDVMRACYALRPEGINWPENEDGLPSFRLEHLTVANGIEHSNAHDAMADVYAT 195
Query: 493 LGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPIC 552
+ +A+L++ + PRLF+++ S R K+ + I P +P +++ MF + SL+ P+
Sbjct: 196 IAMAKLVKTHQPRLFDYLYSHRNKRKLATLIDVPQLKPLVHVSGMFGAARGNTSLVAPLA 255
Query: 553 IHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIVI 610
HP N+N +I +L D L D + +R+ L ++ + PI ++HLN+ P V+
Sbjct: 256 WHPDNRNAVIMVDLAGDMSPLLELDADTLRERLYTPRDELGDLPAAPIKLVHLNKCP-VL 314
Query: 611 SNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINN----SDLELNI 666
+ L R ++ +N A + N + +K+ Y SD N+
Sbjct: 315 AQANTLRPQDADRLGINIQRCLEN---AQLLRANPQVREKVVALYAEAEPFVPSD---NV 368
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
D +LYN F S D + I+ P+ L ++ F +K++E L+F YRARNF TL E
Sbjct: 369 DAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFADKRIERLLFNYRARNFPGTLDENE 428
Query: 727 LKRWKKYRISRF 738
+RW ++R + F
Sbjct: 429 QQRWLEHRRNVF 440
>gi|110805983|ref|YP_689503.1| exonuclease I [Shigella flexneri 5 str. 8401]
gi|110615531|gb|ABF04198.1| Exodeoxyribonuclease I [Shigella flexneri 5 str. 8401]
Length = 474
Score = 323 bits (828), Expect = 4e-85, Method: Composition-based stats.
Identities = 166/433 (38%), Positives = 250/433 (57%), Gaps = 13/433 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT I
Sbjct: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPRPGAVLITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P+
Sbjct: 189 TIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLAHVSGMFGAWRGNTSWVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N +I +L D L DI+ +R+ L K ++ +P+ ++H+++ P V
Sbjct: 249 AWHPENRNAVIMADLAGDISPLLELDIDTLRELLYTAKADLGDNAAVPVKLVHIDKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLELN 665
++ L R + N+K + N + +K+ + SD N
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD---N 361
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 VDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYA 421
Query: 726 ELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 EQQRWLEHRHQVF 434
>gi|331663511|ref|ZP_08364421.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli TA143]
gi|331059310|gb|EGI31287.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli TA143]
Length = 474
Score = 323 bits (828), Expect = 4e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 249/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 188 ATISMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ P+ ++H+N+ P
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAFPVKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 361 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 420
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 421 AEQQRWLEHRRQVF 434
>gi|418464238|ref|ZP_13035178.1| exonuclease I [Aggregatibacter actinomycetemcomitans RhAA1]
gi|359757034|gb|EHK91190.1| exonuclease I [Aggregatibacter actinomycetemcomitans RhAA1]
Length = 474
Score = 323 bits (828), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 168/426 (39%), Positives = 243/426 (57%), Gaps = 7/426 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YDYE+FG+N DRP QF IRTD N I PI+LYCK D+LP P A L+T I
Sbjct: 7 SFFIYDYESFGVNPATDRPAQFGGIRTDADFNIIGEPIVLYCKQTNDYLPAPEAVLVTGI 66
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C G+PE +FA+ I + F +P T +G+N I +DDE+TR+ F+RN I+PYE WK
Sbjct: 67 TPQECNEKGLPEPEFAARILQEFSQPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWK 126
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI WP + G PSF+LE L+ N + H AHDA+SDV A
Sbjct: 127 NGNSRWDLLDLVRACYALRPDGIEWPLDDEGMPSFRLEKLTEANGIVHDNAHDAMSDVYA 186
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF + R KK V I P +++ M + +L+ P+
Sbjct: 187 TIEMAKLIKQKQPKLFQYFFENRGKKEVEKLIDTAEMTPLVHVSGMLGNYRGNTTLIAPL 246
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLNRSP 607
HP NKN +I +L + L ++R+ L KK + +P+ +IH+N+ P
Sbjct: 247 AWHPTNKNAVIVCDLTANIDDLLTKSAEELRENLYTKKETLLAAGTLPVPLKLIHINKCP 306
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
IV +L N D +N + + IF ++ D+ N++
Sbjct: 307 IVAPAKTLLPQNAEC-LGIDQELCARNRQRLQEARDIRQKVMDIF--HQEREFDVSDNVE 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
ELYN F S D +AILRS+ P+KL+ N F++ ++ EL+F YRAR+F TL+ E
Sbjct: 364 TELYNGFFSDADKNNMAILRSLEPEKLAEHNLSFQDPRIPELLFHYRARHFYHTLNRAEQ 423
Query: 728 KRWKKY 733
+W+KY
Sbjct: 424 IKWQKY 429
>gi|416774927|ref|ZP_11874140.1| exonuclease I [Escherichia coli O157:H7 str. G5101]
gi|320641419|gb|EFX10863.1| exonuclease I [Escherichia coli O157:H7 str. G5101]
Length = 475
Score = 323 bits (828), Expect = 4e-85, Method: Composition-based stats.
Identities = 166/433 (38%), Positives = 249/433 (57%), Gaps = 13/433 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT I
Sbjct: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W+
Sbjct: 70 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQ 129
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 189
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P+
Sbjct: 190 TIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPL 249
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P V
Sbjct: 250 AWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP-V 308
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLELN 665
++ L R + N+K + N + +K+ + SD N
Sbjct: 309 LAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD---N 362
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 363 VDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYA 422
Query: 726 ELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 423 EQQRWLEHRRQVF 435
>gi|300947322|ref|ZP_07161523.1| exonuclease [Escherichia coli MS 116-1]
gi|300453074|gb|EFK16694.1| exonuclease [Escherichia coli MS 116-1]
Length = 475
Score = 323 bits (828), Expect = 4e-85, Method: Composition-based stats.
Identities = 166/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +++ + SD
Sbjct: 308 VLAQANTLRPEDANRLGINRQHCLDNLKI---LRENPQVREEVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|168751661|ref|ZP_02776683.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4113]
gi|168757555|ref|ZP_02782562.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4401]
gi|168769762|ref|ZP_02794769.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4486]
gi|168775542|ref|ZP_02800549.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4196]
gi|168782293|ref|ZP_02807300.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4076]
gi|168788678|ref|ZP_02813685.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC869]
gi|168799108|ref|ZP_02824115.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC508]
gi|195939352|ref|ZP_03084734.1| exonuclease I [Escherichia coli O157:H7 str. EC4024]
gi|208807658|ref|ZP_03249995.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4206]
gi|208817101|ref|ZP_03258193.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4045]
gi|208818353|ref|ZP_03258673.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4042]
gi|209398513|ref|YP_002271254.1| exonuclease I [Escherichia coli O157:H7 str. EC4115]
gi|254793793|ref|YP_003078630.1| exonuclease I [Escherichia coli O157:H7 str. TW14359]
gi|261225144|ref|ZP_05939425.1| exonuclease I [Escherichia coli O157:H7 str. FRIK2000]
gi|261257512|ref|ZP_05950045.1| exonuclease I [Escherichia coli O157:H7 str. FRIK966]
gi|416318645|ref|ZP_11661289.1| Exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC1212]
gi|419069979|ref|ZP_13615609.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC3E]
gi|419081169|ref|ZP_13626621.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC4A]
gi|419086828|ref|ZP_13632193.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC4B]
gi|419098703|ref|ZP_13643908.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC4D]
gi|419104418|ref|ZP_13649553.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC4E]
gi|420270079|ref|ZP_14772443.1| exonuclease I [Escherichia coli PA22]
gi|420275916|ref|ZP_14778210.1| exonuclease I [Escherichia coli PA40]
gi|420287322|ref|ZP_14789514.1| exonuclease I [Escherichia coli TW10246]
gi|420292897|ref|ZP_14795024.1| exonuclease I [Escherichia coli TW11039]
gi|420298777|ref|ZP_14800828.1| exonuclease I [Escherichia coli TW09109]
gi|420304679|ref|ZP_14806679.1| exonuclease I [Escherichia coli TW10119]
gi|420310168|ref|ZP_14812104.1| exonuclease I [Escherichia coli EC1738]
gi|421812752|ref|ZP_16248487.1| exonuclease I [Escherichia coli 8.0416]
gi|421824481|ref|ZP_16259863.1| exonuclease I [Escherichia coli FRIK920]
gi|424084386|ref|ZP_17820913.1| exonuclease I [Escherichia coli FDA517]
gi|424090851|ref|ZP_17826818.1| exonuclease I [Escherichia coli FRIK1996]
gi|424097407|ref|ZP_17832775.1| exonuclease I [Escherichia coli FRIK1985]
gi|424103660|ref|ZP_17838493.1| exonuclease I [Escherichia coli FRIK1990]
gi|424116116|ref|ZP_17850002.1| exonuclease I [Escherichia coli PA3]
gi|424134801|ref|ZP_17867310.1| exonuclease I [Escherichia coli PA10]
gi|424244579|ref|ZP_17890224.1| exonuclease I [Escherichia coli PA25]
gi|424323894|ref|ZP_17896139.1| exonuclease I [Escherichia coli PA28]
gi|424462697|ref|ZP_17913212.1| exonuclease I [Escherichia coli PA39]
gi|424469103|ref|ZP_17918965.1| exonuclease I [Escherichia coli PA41]
gi|424494072|ref|ZP_17941889.1| exonuclease I [Escherichia coli TW09195]
gi|424500868|ref|ZP_17947821.1| exonuclease I [Escherichia coli EC4203]
gi|424507053|ref|ZP_17953511.1| exonuclease I [Escherichia coli EC4196]
gi|424520774|ref|ZP_17964933.1| exonuclease I [Escherichia coli TW14301]
gi|424544830|ref|ZP_17987305.1| exonuclease I [Escherichia coli EC4402]
gi|424551101|ref|ZP_17993003.1| exonuclease I [Escherichia coli EC4439]
gi|424569745|ref|ZP_18010352.1| exonuclease I [Escherichia coli EC4448]
gi|424575916|ref|ZP_18016039.1| exonuclease I [Escherichia coli EC1845]
gi|424581773|ref|ZP_18021454.1| exonuclease I [Escherichia coli EC1863]
gi|425138637|ref|ZP_18539072.1| exonuclease I [Escherichia coli 10.0833]
gi|425180737|ref|ZP_18578461.1| exonuclease I [Escherichia coli FRIK1999]
gi|425193826|ref|ZP_18590626.1| exonuclease I [Escherichia coli NE1487]
gi|425200208|ref|ZP_18596473.1| exonuclease I [Escherichia coli NE037]
gi|425206674|ref|ZP_18602503.1| exonuclease I [Escherichia coli FRIK2001]
gi|425243521|ref|ZP_18636860.1| exonuclease I [Escherichia coli MA6]
gi|425255420|ref|ZP_18647975.1| exonuclease I [Escherichia coli CB7326]
gi|425261719|ref|ZP_18653764.1| exonuclease I [Escherichia coli EC96038]
gi|425295200|ref|ZP_18685442.1| exonuclease I [Escherichia coli PA38]
gi|425330143|ref|ZP_18718053.1| exonuclease I [Escherichia coli EC1846]
gi|425336284|ref|ZP_18723721.1| exonuclease I [Escherichia coli EC1847]
gi|425342719|ref|ZP_18729653.1| exonuclease I [Escherichia coli EC1848]
gi|425348518|ref|ZP_18735036.1| exonuclease I [Escherichia coli EC1849]
gi|425354814|ref|ZP_18740919.1| exonuclease I [Escherichia coli EC1850]
gi|425360790|ref|ZP_18746474.1| exonuclease I [Escherichia coli EC1856]
gi|425366923|ref|ZP_18752157.1| exonuclease I [Escherichia coli EC1862]
gi|425373336|ref|ZP_18758021.1| exonuclease I [Escherichia coli EC1864]
gi|425386154|ref|ZP_18769753.1| exonuclease I [Escherichia coli EC1866]
gi|425392874|ref|ZP_18776026.1| exonuclease I [Escherichia coli EC1868]
gi|425398997|ref|ZP_18781740.1| exonuclease I [Escherichia coli EC1869]
gi|425405048|ref|ZP_18787326.1| exonuclease I [Escherichia coli EC1870]
gi|428947519|ref|ZP_19019839.1| exodeoxyribonuclease I [Escherichia coli 88.1467]
gi|428966139|ref|ZP_19036943.1| exodeoxyribonuclease I [Escherichia coli 90.0091]
gi|428971945|ref|ZP_19042315.1| exodeoxyribonuclease I [Escherichia coli 90.0039]
gi|429002418|ref|ZP_19070591.1| exodeoxyribonuclease I [Escherichia coli 95.0183]
gi|429033100|ref|ZP_19098661.1| exodeoxyribonuclease I [Escherichia coli 96.0939]
gi|429039258|ref|ZP_19104402.1| exodeoxyribonuclease I [Escherichia coli 96.0932]
gi|429073657|ref|ZP_19136931.1| exonuclease I [Escherichia coli 99.0678]
gi|444925446|ref|ZP_21244779.1| exodeoxyribonuclease I [Escherichia coli 09BKT078844]
gi|444931175|ref|ZP_21250243.1| exodeoxyribonuclease I [Escherichia coli 99.0814]
gi|444936501|ref|ZP_21255313.1| exodeoxyribonuclease I [Escherichia coli 99.0815]
gi|444942193|ref|ZP_21260740.1| exodeoxyribonuclease I [Escherichia coli 99.0816]
gi|444947764|ref|ZP_21266098.1| exodeoxyribonuclease I [Escherichia coli 99.0839]
gi|444953278|ref|ZP_21271401.1| exodeoxyribonuclease I [Escherichia coli 99.0848]
gi|444969864|ref|ZP_21287255.1| exodeoxyribonuclease I [Escherichia coli 99.1793]
gi|444975180|ref|ZP_21292340.1| exodeoxyribonuclease I [Escherichia coli 99.1805]
gi|444980626|ref|ZP_21297556.1| exodeoxyribonuclease I [Escherichia coli ATCC 700728]
gi|444991272|ref|ZP_21307937.1| exodeoxyribonuclease I [Escherichia coli PA19]
gi|444996520|ref|ZP_21313039.1| exodeoxyribonuclease I [Escherichia coli PA13]
gi|445007621|ref|ZP_21323885.1| exodeoxyribonuclease I [Escherichia coli PA47]
gi|445012753|ref|ZP_21328874.1| exodeoxyribonuclease I [Escherichia coli PA48]
gi|445024117|ref|ZP_21339959.1| exodeoxyribonuclease I [Escherichia coli 7.1982]
gi|445040436|ref|ZP_21355832.1| exodeoxyribonuclease I [Escherichia coli PA35]
gi|445045658|ref|ZP_21360933.1| exodeoxyribonuclease I [Escherichia coli 3.4880]
gi|452967094|ref|ZP_21965321.1| exonuclease I [Escherichia coli O157:H7 str. EC4009]
gi|187768997|gb|EDU32841.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4196]
gi|188014326|gb|EDU52448.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4113]
gi|189000162|gb|EDU69148.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4076]
gi|189355495|gb|EDU73914.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4401]
gi|189361232|gb|EDU79651.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4486]
gi|189371612|gb|EDU90028.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC869]
gi|189378492|gb|EDU96908.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC508]
gi|208727459|gb|EDZ77060.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4206]
gi|208730720|gb|EDZ79410.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4045]
gi|208738476|gb|EDZ86158.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4042]
gi|209159913|gb|ACI37346.1| exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC4115]
gi|254593193|gb|ACT72554.1| exonuclease I [Escherichia coli O157:H7 str. TW14359]
gi|320191824|gb|EFW66472.1| Exodeoxyribonuclease I [Escherichia coli O157:H7 str. EC1212]
gi|377913341|gb|EHU77483.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC3E]
gi|377927064|gb|EHU90988.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC4A]
gi|377931561|gb|EHU95422.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC4B]
gi|377943250|gb|EHV06971.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC4D]
gi|377948579|gb|EHV12229.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC4E]
gi|390643331|gb|EIN22693.1| exonuclease I [Escherichia coli FRIK1996]
gi|390643921|gb|EIN23232.1| exonuclease I [Escherichia coli FDA517]
gi|390663449|gb|EIN40950.1| exonuclease I [Escherichia coli FRIK1985]
gi|390664633|gb|EIN41994.1| exonuclease I [Escherichia coli FRIK1990]
gi|390679135|gb|EIN55061.1| exonuclease I [Escherichia coli PA3]
gi|390699053|gb|EIN73414.1| exonuclease I [Escherichia coli PA10]
gi|390714735|gb|EIN87620.1| exonuclease I [Escherichia coli PA22]
gi|390724084|gb|EIN96656.1| exonuclease I [Escherichia coli PA25]
gi|390728283|gb|EIO00606.1| exonuclease I [Escherichia coli PA28]
gi|390758589|gb|EIO28024.1| exonuclease I [Escherichia coli PA40]
gi|390768625|gb|EIO37651.1| exonuclease I [Escherichia coli PA41]
gi|390770470|gb|EIO39324.1| exonuclease I [Escherichia coli PA39]
gi|390790532|gb|EIO57953.1| exonuclease I [Escherichia coli TW10246]
gi|390797548|gb|EIO64788.1| exonuclease I [Escherichia coli TW11039]
gi|390807348|gb|EIO74236.1| exonuclease I [Escherichia coli TW09109]
gi|390816269|gb|EIO82765.1| exonuclease I [Escherichia coli TW10119]
gi|390827595|gb|EIO93350.1| exonuclease I [Escherichia coli EC4203]
gi|390831247|gb|EIO96663.1| exonuclease I [Escherichia coli TW09195]
gi|390832766|gb|EIO97977.1| exonuclease I [Escherichia coli EC4196]
gi|390847162|gb|EIP10712.1| exonuclease I [Escherichia coli TW14301]
gi|390872206|gb|EIP33553.1| exonuclease I [Escherichia coli EC4402]
gi|390879316|gb|EIP40089.1| exonuclease I [Escherichia coli EC4439]
gi|390897141|gb|EIP56482.1| exonuclease I [Escherichia coli EC4448]
gi|390900307|gb|EIP59527.1| exonuclease I [Escherichia coli EC1738]
gi|390920121|gb|EIP78438.1| exonuclease I [Escherichia coli EC1863]
gi|390920974|gb|EIP79198.1| exonuclease I [Escherichia coli EC1845]
gi|408069363|gb|EKH03749.1| exonuclease I [Escherichia coli FRIK920]
gi|408098083|gb|EKH30909.1| exonuclease I [Escherichia coli FRIK1999]
gi|408108890|gb|EKH40827.1| exonuclease I [Escherichia coli NE1487]
gi|408116139|gb|EKH47477.1| exonuclease I [Escherichia coli NE037]
gi|408121975|gb|EKH52860.1| exonuclease I [Escherichia coli FRIK2001]
gi|408160996|gb|EKH88985.1| exonuclease I [Escherichia coli MA6]
gi|408175247|gb|EKI02187.1| exonuclease I [Escherichia coli CB7326]
gi|408181615|gb|EKI08163.1| exonuclease I [Escherichia coli EC96038]
gi|408218834|gb|EKI43020.1| exonuclease I [Escherichia coli PA38]
gi|408247888|gb|EKI70015.1| exonuclease I [Escherichia coli EC1846]
gi|408257857|gb|EKI79153.1| exonuclease I [Escherichia coli EC1847]
gi|408260499|gb|EKI81605.1| exonuclease I [Escherichia coli EC1848]
gi|408266391|gb|EKI87010.1| exonuclease I [Escherichia coli EC1849]
gi|408276010|gb|EKI95945.1| exonuclease I [Escherichia coli EC1850]
gi|408278044|gb|EKI97815.1| exonuclease I [Escherichia coli EC1856]
gi|408288863|gb|EKJ07659.1| exonuclease I [Escherichia coli EC1862]
gi|408292168|gb|EKJ10736.1| exonuclease I [Escherichia coli EC1864]
gi|408309209|gb|EKJ26407.1| exonuclease I [Escherichia coli EC1868]
gi|408309404|gb|EKJ26587.1| exonuclease I [Escherichia coli EC1866]
gi|408320646|gb|EKJ36734.1| exonuclease I [Escherichia coli EC1869]
gi|408327184|gb|EKJ42939.1| exonuclease I [Escherichia coli EC1870]
gi|408581351|gb|EKK56696.1| exonuclease I [Escherichia coli 10.0833]
gi|408601990|gb|EKK75754.1| exonuclease I [Escherichia coli 8.0416]
gi|427209240|gb|EKV79283.1| exodeoxyribonuclease I [Escherichia coli 88.1467]
gi|427223751|gb|EKV92478.1| exodeoxyribonuclease I [Escherichia coli 90.0091]
gi|427228427|gb|EKV96873.1| exodeoxyribonuclease I [Escherichia coli 90.0039]
gi|427262520|gb|EKW28401.1| exodeoxyribonuclease I [Escherichia coli 95.0183]
gi|427283957|gb|EKW48100.1| exodeoxyribonuclease I [Escherichia coli 96.0939]
gi|427292826|gb|EKW56147.1| exodeoxyribonuclease I [Escherichia coli 96.0932]
gi|427329167|gb|EKW90499.1| exonuclease I [Escherichia coli 99.0678]
gi|444539115|gb|ELV18912.1| exodeoxyribonuclease I [Escherichia coli 99.0814]
gi|444540826|gb|ELV20453.1| exodeoxyribonuclease I [Escherichia coli 09BKT078844]
gi|444548242|gb|ELV26718.1| exodeoxyribonuclease I [Escherichia coli 99.0815]
gi|444558459|gb|ELV35743.1| exodeoxyribonuclease I [Escherichia coli 99.0839]
gi|444559574|gb|ELV36787.1| exodeoxyribonuclease I [Escherichia coli 99.0816]
gi|444564757|gb|ELV41679.1| exodeoxyribonuclease I [Escherichia coli 99.0848]
gi|444580554|gb|ELV56468.1| exodeoxyribonuclease I [Escherichia coli 99.1793]
gi|444594616|gb|ELV69778.1| exodeoxyribonuclease I [Escherichia coli ATCC 700728]
gi|444597172|gb|ELV72197.1| exodeoxyribonuclease I [Escherichia coli 99.1805]
gi|444608206|gb|ELV82750.1| exodeoxyribonuclease I [Escherichia coli PA13]
gi|444608469|gb|ELV82999.1| exodeoxyribonuclease I [Escherichia coli PA19]
gi|444625263|gb|ELV99131.1| exodeoxyribonuclease I [Escherichia coli PA48]
gi|444625313|gb|ELV99175.1| exodeoxyribonuclease I [Escherichia coli PA47]
gi|444640031|gb|ELW13325.1| exodeoxyribonuclease I [Escherichia coli 7.1982]
gi|444655408|gb|ELW28025.1| exodeoxyribonuclease I [Escherichia coli PA35]
gi|444661189|gb|ELW33519.1| exodeoxyribonuclease I [Escherichia coli 3.4880]
Length = 474
Score = 323 bits (828), Expect = 4e-85, Method: Composition-based stats.
Identities = 166/433 (38%), Positives = 249/433 (57%), Gaps = 13/433 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT I
Sbjct: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P+
Sbjct: 189 TIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P V
Sbjct: 249 AWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLELN 665
++ L R + N+K + N + +K+ + SD N
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD---N 361
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 VDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYA 421
Query: 726 ELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 EQQRWLEHRRQVF 434
>gi|331683697|ref|ZP_08384293.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli H299]
gi|419284564|ref|ZP_13826742.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC10F]
gi|450218018|ref|ZP_21895734.1| exonuclease I [Escherichia coli O08]
gi|331078649|gb|EGI49851.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli H299]
gi|378133306|gb|EHW94652.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC10F]
gi|449318051|gb|EMD08127.1| exonuclease I [Escherichia coli O08]
Length = 474
Score = 323 bits (828), Expect = 4e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 249/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF ++ + R K ++A I P +P +++ MF + S + P
Sbjct: 188 ATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLNNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 361 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 420
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 421 AEQQRWLEHRRQVF 434
>gi|422956618|ref|ZP_16969092.1| exodeoxyribonuclease I [Escherichia coli H494]
gi|371599534|gb|EHN88319.1| exodeoxyribonuclease I [Escherichia coli H494]
Length = 475
Score = 323 bits (828), Expect = 4e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 249/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF ++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLNNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|301329562|ref|ZP_07222343.1| exonuclease [Escherichia coli MS 78-1]
gi|386281092|ref|ZP_10058755.1| exodeoxyribonuclease I [Escherichia sp. 4_1_40B]
gi|419370518|ref|ZP_13911638.1| exodeoxyribonuclease I [Escherichia coli DEC14A]
gi|432543620|ref|ZP_19780464.1| exodeoxyribonuclease I [Escherichia coli KTE236]
gi|432549111|ref|ZP_19785879.1| exodeoxyribonuclease I [Escherichia coli KTE237]
gi|432691989|ref|ZP_19927220.1| exodeoxyribonuclease I [Escherichia coli KTE161]
gi|432962138|ref|ZP_20151836.1| exodeoxyribonuclease I [Escherichia coli KTE202]
gi|433063474|ref|ZP_20250401.1| exodeoxyribonuclease I [Escherichia coli KTE125]
gi|300844319|gb|EFK72079.1| exonuclease [Escherichia coli MS 78-1]
gi|378217903|gb|EHX78178.1| exodeoxyribonuclease I [Escherichia coli DEC14A]
gi|386121802|gb|EIG70416.1| exodeoxyribonuclease I [Escherichia sp. 4_1_40B]
gi|431074477|gb|ELD82036.1| exodeoxyribonuclease I [Escherichia coli KTE236]
gi|431079389|gb|ELD86343.1| exodeoxyribonuclease I [Escherichia coli KTE237]
gi|431227464|gb|ELF24601.1| exodeoxyribonuclease I [Escherichia coli KTE161]
gi|431474369|gb|ELH54187.1| exodeoxyribonuclease I [Escherichia coli KTE202]
gi|431581946|gb|ELI54386.1| exodeoxyribonuclease I [Escherichia coli KTE125]
Length = 474
Score = 323 bits (828), Expect = 4e-85, Method: Composition-based stats.
Identities = 166/433 (38%), Positives = 249/433 (57%), Gaps = 13/433 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT I
Sbjct: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P+
Sbjct: 189 TIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P V
Sbjct: 249 AWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLELN 665
++ L R + N+K + N + +K+ + SD N
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD---N 361
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 VDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYA 421
Query: 726 ELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 EQQRWLEHRRQVF 434
>gi|332141096|ref|YP_004426834.1| exodeoxyribonuclease I [Alteromonas macleodii str. 'Deep ecotype']
gi|327551118|gb|AEA97836.1| exodeoxyribonuclease I [Alteromonas macleodii str. 'Deep ecotype']
Length = 478
Score = 323 bits (828), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 175/474 (36%), Positives = 270/474 (56%), Gaps = 11/474 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFLW+D+ETFG + ++D P QFAA+RTD+ LN + PI + A D+LP P ACL+T I
Sbjct: 7 TFLWHDFETFGTSPQKDLPCQFAAVRTDMDLNVVGKPINIMSAIANDYLPHPEACLVTGI 66
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + +G E FA+ I P T SVG+N+I FDDE++R++F+RN +PY REW+
Sbjct: 67 TPQQTIRDGSNEADFAAKIYHEMSTPNTCSVGFNSIRFDDEVSRYLFYRNFYDPYSREWR 126
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD+I+V +A Y L P GI WP + +G PSF+LE L+ NN+ H AHDAL+DV A
Sbjct: 127 NGNSRWDIIDVARACYALRPDGINWPLREDGSPSFRLEALTAANNIGHDNAHDALNDVYA 186
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+LI+ PRLF++ LSLR K V+ +I +I+ + + + PI
Sbjct: 187 TISLAKLIKEKQPRLFDYALSLRNKHSVMQQIDLSKPSVLLHISSKLPASQGCCTWVMPI 246
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSF---KEDIPISMIHLNRSPI 608
HP N N I +L HD L + ++I+ L +++ +E + +IH+NRSP
Sbjct: 247 AKHPTNSNAFIVIDLSHDIDSVLNDSADEIKQALYAPSDTYDDARERPGLKLIHVNRSPF 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
I+ K ++ + R D N K +S + + KI Y+ EL+ID
Sbjct: 307 -ITTAKAMTEDNAERLGLDRERCLDNYKKLASTPD---LVSKIVAIYEEERHSSELDIDH 362
Query: 669 ELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY+ F+S +D + + P+ L+ +++ L++L+F YRARN+ TLS E+
Sbjct: 363 ALYSGGFLSDEDRRWCENVINAKPEDLATFGDKTQHEGLKKLLFRYRARNYPNTLSADEM 422
Query: 728 KRWKKYRISRFYNKK-NNLYNINMFYLEIESLLKKANEHDTK--ILNALLMYGK 778
+W+ +R +R + + + + + +ESL + +++ K IL AL Y +
Sbjct: 423 TKWQYHRQARLTDSDFHGSITLETYMMRLESLAHEHSDNPEKQAILRALYQYAE 476
>gi|432832013|ref|ZP_20065587.1| exodeoxyribonuclease I [Escherichia coli KTE135]
gi|431375983|gb|ELG61306.1| exodeoxyribonuclease I [Escherichia coli KTE135]
Length = 474
Score = 323 bits (828), Expect = 4e-85, Method: Composition-based stats.
Identities = 166/433 (38%), Positives = 248/433 (57%), Gaps = 13/433 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT I
Sbjct: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF ++ + R K ++A I P +P +++ MF + S + P+
Sbjct: 189 TIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P V
Sbjct: 249 AWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLELN 665
++ L R + N+K + N + +K+ + SD N
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD---N 361
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 VDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYA 421
Query: 726 ELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 EQQRWLEHRRQVF 434
>gi|419323390|ref|ZP_13865088.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC12B]
gi|378166003|gb|EHX26932.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC12B]
Length = 474
Score = 323 bits (828), Expect = 4e-85, Method: Composition-based stats.
Identities = 166/433 (38%), Positives = 249/433 (57%), Gaps = 13/433 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT I
Sbjct: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P+
Sbjct: 189 TIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P V
Sbjct: 249 AWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLELN 665
++ L R + N+K + N + +K+ + SD N
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD---N 361
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 VDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYA 421
Query: 726 ELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 EQQRWLEHRRQVF 434
>gi|381404031|ref|ZP_09928715.1| exonuclease I [Pantoea sp. Sc1]
gi|380737230|gb|EIB98293.1| exonuclease I [Pantoea sp. Sc1]
Length = 475
Score = 323 bits (828), Expect = 4e-85, Method: Composition-based stats.
Identities = 171/475 (36%), Positives = 259/475 (54%), Gaps = 14/475 (2%)
Query: 309 GNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLI 368
G TFL++DYETFG + RDRP QFA +RTD N + P + YC+ D+LP P A +I
Sbjct: 6 GQPTFLFHDYETFGTSPSRDRPAQFAGLRTDSDFNPVGEPEVFYCRLPDDYLPQPEAVMI 65
Query: 369 TKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYER 428
T ITPQ + G+ E +FA I +F T VGYN + FDDE+TR +F+RN +PY
Sbjct: 66 TGITPQVAMTRGVNEAEFAERIHSLFTTEQTCVVGYNNVRFDDEVTRNIFYRNFYDPYGW 125
Query: 429 EWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSD 488
W+N SRWDL++V++A Y L P GI WP G PSF+LEHL+ N ++H+ AHDA+SD
Sbjct: 126 SWQNGNSRWDLLDVMRACYALRPDGINWPENEEGFPSFRLEHLTKANGVAHENAHDAMSD 185
Query: 489 VRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLM 548
V ATL +A+L++ P+LF F+ + R K ++ I P +P +++ MF + S +
Sbjct: 186 VYATLAMAKLVKEKQPKLFEFLFTHRNKNKLMTLIDIPQMKPLVHVSGMFGAARGNTSWI 245
Query: 549 WPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRS 606
P+ HP N+N LI +L D L D +R+ L KN + +P+ ++H+N+
Sbjct: 246 VPLAWHPDNRNALIVVDLAGDMSPLLELDAAALRERLYTPKNDLGDLPAVPVKLVHINKC 305
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK-INNSDLELN 665
P V++ L R D N+ + +F + + SD +
Sbjct: 306 P-VLAPASTLRPEDAARLGIDRQHCLANLALLRQQPDVREKLVTLFAEAEPFTPSD---D 361
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LY+ F S D + I+R +P L ++ FE+ ++ +L+F YRARNF TL
Sbjct: 362 VDTQLYDGFFSDADRAGMNIIRQTAPANLPALDLTFESARVAKLLFRYRARNFPGTLDDA 421
Query: 726 ELKRWKKYRISRFYNKKNNLYNINMFYLEIESL--LKKANEHDTKILNALLMYGK 778
E +RW ++R + + + F E+ESL L +A+ L AL +Y +
Sbjct: 422 EQQRWLQHRREVLNSDR-----VQAFMQELESLASLHEADAEKLGQLKALYLYAQ 471
>gi|354597934|ref|ZP_09015951.1| Exodeoxyribonuclease I [Brenneria sp. EniD312]
gi|353675869|gb|EHD21902.1| Exodeoxyribonuclease I [Brenneria sp. EniD312]
Length = 475
Score = 323 bits (828), Expect = 4e-85, Method: Composition-based stats.
Identities = 166/471 (35%), Positives = 271/471 (57%), Gaps = 15/471 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF +DYETFG + RDRP QFA +RTD N I +P+++YCKP D+LP+P A LIT I
Sbjct: 8 TFFIHDYETFGKHPARDRPAQFAGVRTDADFNIIGDPLVIYCKPTDDYLPEPEAVLITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+ E +FA I + F PGT +GYN I FDDE++R +F+RN +PY W+
Sbjct: 68 TPQLAATKGVNEAEFARRIYEAFSVPGTCIMGYNNIRFDDEVSRNLFYRNFYDPYAYSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
+ SRWDL++ ++A + L P GI WP + G PSF+LEHL+ N ++H+ AHDA+SDV A
Sbjct: 128 HGNSRWDLLDALRACHALRPEGIVWPENDEGLPSFRLEHLTRANGIAHEHAHDAMSDVYA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF+++ LR K V A I +P +++ MF + SL+ P+
Sbjct: 188 TIAMAQLLKQAQPRLFDYLFQLRNKNKVNALIDIAQMKPLVHVSGMFGAARGNTSLVAPL 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSF---KEDIPISMIHLNRSPI 608
HP N+N +I +L D L D + +R+ L +++ + +PI ++H+N+ P
Sbjct: 248 AWHPDNRNAVIMCDLAGDMTPLLELDADTLRERLYTRRDRLSAGQSAVPIKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
V++ + L R D N+ + + + I +K+ + + + E ++D
Sbjct: 307 VLAPVNTLRPEDADRLGIDRQRCRDNL---ALLRQYSQIREKVVALFAESPAFAAESDVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+Y+ F D + + I++ +P+ L ++ F + +LE L+F YRARNF TL E
Sbjct: 364 LRIYDGFFGDADRMTMKIIQQTAPQNLPALDVKFVDDRLEPLLFRYRARNFPNTLDDGEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLKK--ANEHDTKILNALLMY 776
+RW ++R F ++ + + E+++L ++ ++ T ++ ALL Y
Sbjct: 424 QRWLQHRQEVFTTER-----LQQYVTELDALYQRYEGDKPKTDLIKALLAY 469
>gi|419175591|ref|ZP_13719431.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC7B]
gi|378033557|gb|EHV96133.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC7B]
Length = 474
Score = 323 bits (828), Expect = 4e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 249/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF ++ + R K ++A I P +P +++ MF + S + P
Sbjct: 188 ATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLNNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 361 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 420
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 421 AEQQRWLEHRRQVF 434
>gi|419763847|ref|ZP_14290087.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae DSM 30104]
gi|397742430|gb|EJK89648.1| exonuclease I [Klebsiella pneumoniae subsp. pneumoniae DSM 30104]
Length = 474
Score = 323 bits (828), Expect = 4e-85, Method: Composition-based stats.
Identities = 165/429 (38%), Positives = 245/429 (57%), Gaps = 7/429 (1%)
Query: 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKIT 372
FL++DYETFG + DRP QFAAIRTD LN + P + YCKPA D+LP P+A +IT IT
Sbjct: 10 FLFHDYETFGTSPSLDRPAQFAAIRTDAELNVLGEPEVFYCKPADDYLPQPQAVMITGIT 69
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
PQ L G E FA I +F P T VGYN + FDDE+TR +F+RN +PY W++
Sbjct: 70 PQEALAKGDNEATFARRIHALFTVPQTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRAT 492
+ SRWDL++V++A Y L P GI WP + G PSF+LEHL+ N + H+ AHDA++DV AT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGIAWPENDEGLPSFRLEHLTVANGIEHQNAHDAMADVYAT 189
Query: 493 LGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPIC 552
+ +A+L++ PRLF+++ S R K+ + I P +P +++ MF + SL+ P+
Sbjct: 190 IAMAKLVKTRQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAPLA 249
Query: 553 IHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIVI 610
HP N+N +I +L D L D + +R+ L + + PI ++HLN+ P V+
Sbjct: 250 WHPENRNAVIMVDLAGDMAPLLELDADALRERLYTPRAELGDLPAAPIKLVHLNKCP-VL 308
Query: 611 SNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL-ELNIDEE 669
+ L R + +N A + N + +K+ Y + N+D +
Sbjct: 309 AQANTLRPQDADRLGISIQRCLEN---AQLLRANPQVREKVVAVYAEAEPFVPSENVDAQ 365
Query: 670 LYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKR 729
LYN F S D + I+ P+ L ++ F ++++E L+F YRARNF TL E +R
Sbjct: 366 LYNGFFSDADRSAMKIVLETEPRNLPALDITFADQRIERLLFNYRARNFPGTLDEHEQQR 425
Query: 730 WKKYRISRF 738
W ++R F
Sbjct: 426 WLEHRRQVF 434
>gi|157155858|ref|YP_001463362.1| exonuclease I [Escherichia coli E24377A]
gi|432765414|ref|ZP_19999852.1| exodeoxyribonuclease I [Escherichia coli KTE48]
gi|157077888|gb|ABV17596.1| exodeoxyribonuclease I [Escherichia coli E24377A]
gi|431309589|gb|ELF97782.1| exodeoxyribonuclease I [Escherichia coli KTE48]
Length = 475
Score = 323 bits (828), Expect = 4e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLIALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|89330230|emb|CAJ84172.1| exodeoxyribonuclease I [Escherichia coli K-12]
Length = 475
Score = 323 bits (828), Expect = 5e-85, Method: Composition-based stats.
Identities = 166/434 (38%), Positives = 249/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHD ++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDVMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|419334934|ref|ZP_13876469.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC12D]
gi|378183021|gb|EHX43668.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC12D]
Length = 474
Score = 323 bits (828), Expect = 5e-85, Method: Composition-based stats.
Identities = 166/433 (38%), Positives = 249/433 (57%), Gaps = 13/433 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT I
Sbjct: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P+
Sbjct: 189 TIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P V
Sbjct: 249 AWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLELN 665
++ L R + N+K + N + +K+ + SD N
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD---N 361
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 VDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYA 421
Query: 726 ELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 EQQRWLEHRRQVF 434
>gi|416897941|ref|ZP_11927589.1| exodeoxyribonuclease I [Escherichia coli STEC_7v]
gi|417114956|ref|ZP_11966092.1| exodeoxyribonuclease I [Escherichia coli 1.2741]
gi|327253143|gb|EGE64797.1| exodeoxyribonuclease I [Escherichia coli STEC_7v]
gi|386140375|gb|EIG81527.1| exodeoxyribonuclease I [Escherichia coli 1.2741]
Length = 475
Score = 323 bits (828), Expect = 5e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKMRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|422799288|ref|ZP_16847787.1| exonuclease [Escherichia coli M863]
gi|323968146|gb|EGB63555.1| exonuclease [Escherichia coli M863]
Length = 474
Score = 323 bits (828), Expect = 5e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 188 ATIAMAKLVKMRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 361 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 420
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 421 AEQQRWLEHRRQVF 434
>gi|417844252|ref|ZP_12490299.1| Exodeoxyribonuclease I [Haemophilus haemolyticus M21639]
gi|341956934|gb|EGT83347.1| Exodeoxyribonuclease I [Haemophilus haemolyticus M21639]
Length = 473
Score = 323 bits (828), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 164/427 (38%), Positives = 247/427 (57%), Gaps = 7/427 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YDYE+FG+N DRP QFA IRTD N I PIM YCK D+LP P A ++T I
Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C G+ E +FA+ I F +P T +GYN I +DDE+TR+ F+RN I+PYE WK
Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI W Y ++G PSF+LE L+ N ++H+ AHDA++DV A
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIAHENAHDAMADVYA 185
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF + R KK + + P +++ M + + + P+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMAPLVHVSGMLGNYRGNCTWVAPL 245
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLNRSP 607
HP N+N LI +L + L +++R L KK+ +E +P+ ++H+N+ P
Sbjct: 246 AWHPTNQNALIVCDLTGNIDNLLAKSADELRTDLYTKKSELEERGVSSVPLKLVHINKCP 305
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
I ++ K L R D N+ + + IF + + S+ N++
Sbjct: 306 I-LAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFESN--DNVE 362
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
ELYN F S D ++ILRS+ +KL+ FE+K++ EL+F YRAR+F +TL+ E
Sbjct: 363 TELYNGFFSNADKNNMSILRSLPAEKLAEHGLAFEDKRIPELLFHYRARHFYKTLTRAEQ 422
Query: 728 KRWKKYR 734
+W+KYR
Sbjct: 423 IKWQKYR 429
>gi|330446032|ref|ZP_08309684.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328490223|dbj|GAA04181.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 473
Score = 323 bits (827), Expect = 5e-85, Method: Composition-based stats.
Identities = 174/471 (36%), Positives = 261/471 (55%), Gaps = 14/471 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
+T W DYETFG + DRP QFA +RTD+ +N I P+++YCKP D+LP P ACLIT
Sbjct: 7 ATLYWIDYETFGASPANDRPCQFAGVRTDMDMNIIGEPLVIYCKPPADYLPSPEACLITG 66
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ + G+ E +F I KP T +GYN + FDDE+TR+ +RN +PY W
Sbjct: 67 ITPQEAMEKGLSEPEFIEAIHAELSKPNTCVIGYNNVRFDDEVTRYTLYRNFFDPYGWAW 126
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+N SRWDL+++++ Y L P G+ WP + +PSFKLE LS N + H AHDA++DV
Sbjct: 127 QNGNSRWDLLDIMRTCYALRPDGLNWPLDDEDRPSFKLEKLSVANGIEHANAHDAMADVY 186
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LA++++ N P+LF+++ LR K+ + + P +I+ MF + S + P
Sbjct: 187 ATIELAKIVKTNQPKLFDYLFDLRHKRKLQDLVDIVNLTPLVHISGMFGTDCGNTSWIVP 246
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP NKN +IT NL DP + D +++R+ L K+ D +PI +HLN+ P
Sbjct: 247 LAWHPDNKNAVITVNLALDPTPLIELDADQLRERLYTKRIDLAPDELPVPIKEVHLNKCP 306
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNI 666
V++ K L + R D K++ + I + I +K+ + + D N+
Sbjct: 307 -VLAPAKTLKAEDAARLGIDREQCLKHL---ALIKQHPEIREKVLEMFSVKREYDANDNV 362
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
D LY+ F S D + I+R +L ++ ++K+++ L+F YRARNF TLSY+E
Sbjct: 363 DAMLYDGFFSTADRSTMDIIRETPADQLGSLEINVDDKRIKPLLFRYRARNFPMTLSYEE 422
Query: 727 LKRWKKYRISRF-YNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMY 776
RWK + F N + N E ES +E+ KIL +L Y
Sbjct: 423 QVRWKHHCQDFFEANMPKYMENFEAVAYEYES-----DENKMKILKSLYDY 468
>gi|296103672|ref|YP_003613818.1| exonuclease I [Enterobacter cloacae subsp. cloacae ATCC 13047]
gi|295058131|gb|ADF62869.1| exonuclease I [Enterobacter cloacae subsp. cloacae ATCC 13047]
Length = 474
Score = 323 bits (827), Expect = 5e-85, Method: Composition-based stats.
Identities = 173/470 (36%), Positives = 262/470 (55%), Gaps = 14/470 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A ++T I
Sbjct: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDDEFNIIGEPEVFYCKPADDYLPQPGAVMVTGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+ E +FA I +F P T VGYN I FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQEAREKGVNEAEFARRIHDLFTVPHTCVVGYNNIRFDDEVTRNIFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI WP +G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 NRNSRWDLLDIMRACYALRPEGINWPENEDGLPSFRLEHLTRANGIEHSNAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF ++LS R K+ ++ I P +P +I+ MF + S + P+
Sbjct: 189 TIAMAKLVKTAQPRLFEYLLSHRSKQKLMTLIDVPQMKPLVHISGMFGAWRGNTSWVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R+ L K++ + +P+ ++H+N+ P V
Sbjct: 249 AWHPDNRNAVIMVDLAGDISPLLELDSDTLRERLYTPKDALGDLPAVPVKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL-ELNIDE 668
++ L R + N+K + N + +K+ + + N+D
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFVPSENVDA 364
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
+LYN F S D + I+ P+ L ++ F +K++E+L+F YRARN+ TL E +
Sbjct: 365 QLYNGFFSDADRAAMNIVLQTEPRNLPALDITFADKRIEKLMFNYRARNYPGTLDEAEQE 424
Query: 729 RWKKYRISRFYNKKNNLY--NINMFYLEIESLLKKANEHDTKILNALLMY 776
W ++R + F + + Y + M Y + E NE +L AL Y
Sbjct: 425 CWLQHRRNVFTPEYLHGYAQELEMLYGQYE-----GNEEKQALLKALFRY 469
>gi|167855672|ref|ZP_02478429.1| exodeoxyribonuclease I [Haemophilus parasuis 29755]
gi|167853190|gb|EDS24447.1| exodeoxyribonuclease I [Haemophilus parasuis 29755]
Length = 516
Score = 323 bits (827), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 163/429 (37%), Positives = 247/429 (57%), Gaps = 8/429 (1%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+TF YDYE+FG++ DRP QFA IRTD N I P+M YC+ D+LP P A ++T
Sbjct: 3 QTTFFIYDYESFGVDPATDRPAQFAGIRTDSDFNIIGEPVMFYCQQTEDYLPSPEAVMVT 62
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ C G+PE +FA+ I F +P T +GYN I +DDE+TR+ F+RN +PYE
Sbjct: 63 GITPQLCNQQGLPEPEFAARIHAEFSQPNTCVMGYNNIRYDDEMTRYTFFRNFFDPYEYS 122
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
WKN SRWDL++V++A Y L P GI W Y + G PSFKLE+L+ N ++H AHDA++DV
Sbjct: 123 WKNGNSRWDLLDVVRACYALRPEGIEWAYDDEGMPSFKLENLTKANGIAHDNAHDAMADV 182
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+LI+ P+LF+F L R KK + I P +++ M + + +
Sbjct: 183 YATIAMAKLIKQKQPKLFDFFLQNRGKKALEEMIDVGEMTPLVHVSGMLGNYRGNTAWVV 242
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED----IPISMIHLNR 605
P+ HP N+N +I +L + L +R+ L KK + +P+ ++H+N+
Sbjct: 243 PLAWHPTNRNAVIVCDLSGNINDLLNEPSEILRERLYTKKVELEAQGLYAVPLKLVHINK 302
Query: 606 SPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF-LDYKINNSDLEL 664
PI+ +LS N R D +N+K S + + +K+ + + N
Sbjct: 303 CPILAPAKTLLSENAT-RLGIDRQACLENLKLLKS--QKSLVREKVIDILSEERNYPASN 359
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
NI+ LY+ F D +AILR++ P++L++ F + ++E L+F YRAR++ ETL+
Sbjct: 360 NIETTLYDGFFEPADKNNMAILRNLKPEELAHHGLKFSDPRIEPLLFHYRARHYSETLTR 419
Query: 725 KELKRWKKY 733
E RW+KY
Sbjct: 420 AEQVRWQKY 428
>gi|301050038|ref|ZP_07196952.1| exonuclease [Escherichia coli MS 185-1]
gi|300298222|gb|EFJ54607.1| exonuclease [Escherichia coli MS 185-1]
Length = 491
Score = 323 bits (827), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 166/441 (37%), Positives = 256/441 (58%), Gaps = 9/441 (2%)
Query: 303 DILLHNG--NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFL 360
++++++G STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+L
Sbjct: 15 NLMMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYL 74
Query: 361 PDPRACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWR 420
P P A LIT ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+R
Sbjct: 75 PQPGAVLITGITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYR 134
Query: 421 NLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHK 480
N +PY W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H
Sbjct: 135 NFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHS 194
Query: 481 KAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSS 540
AHDA++DV AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF +
Sbjct: 195 NAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGA 254
Query: 541 KHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPI 598
S + P+ HP N+N +I +L D L D + +R+ L K ++ +P+
Sbjct: 255 WRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPV 314
Query: 599 SMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KI 657
++H+N+ P V++ L R + N+K + N + +K+ + +
Sbjct: 315 KLVHINKCP-VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEA 370
Query: 658 NNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARN 717
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARN
Sbjct: 371 EPFTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARN 430
Query: 718 FIETLSYKELKRWKKYRISRF 738
F TL Y E +RW ++R F
Sbjct: 431 FPGTLDYAEQQRWLEHRRQVF 451
>gi|345432674|dbj|BAK69004.1| exonuclease I [Escherichia coli O157:HNM]
Length = 475
Score = 323 bits (827), Expect = 6e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 249/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNLIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKMRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPSNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|422371864|ref|ZP_16452235.1| exonuclease [Escherichia coli MS 16-3]
gi|433326579|ref|ZP_20403384.1| exonuclease I [Escherichia coli J96]
gi|315296392|gb|EFU55692.1| exonuclease [Escherichia coli MS 16-3]
gi|432345393|gb|ELL39899.1| exonuclease I [Escherichia coli J96]
Length = 474
Score = 323 bits (827), Expect = 6e-85, Method: Composition-based stats.
Identities = 165/429 (38%), Positives = 248/429 (57%), Gaps = 13/429 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT I
Sbjct: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P+
Sbjct: 189 TIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P V
Sbjct: 249 AWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLELN 665
++ L R + N+K + N + +K+ + SD N
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD---N 361
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 VDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYA 421
Query: 726 ELKRWKKYR 734
E +RW ++R
Sbjct: 422 EQQRWLEHR 430
>gi|345299936|ref|YP_004829294.1| Exonuclease domain-containing protein [Enterobacter asburiae LF7a]
gi|345093873|gb|AEN65509.1| Exonuclease domain protein [Enterobacter asburiae LF7a]
Length = 474
Score = 323 bits (827), Expect = 6e-85, Method: Composition-based stats.
Identities = 174/472 (36%), Positives = 263/472 (55%), Gaps = 14/472 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A ++T I
Sbjct: 9 TFLFHDYETFGTHPALDRPSQFAAIRTDEDFNIIGEPEVFYCKPADDYLPQPGAVMVTGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G+ E FA I +F P T VGYN I FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQEARDKGVNEAGFARRIHDLFTVPNTCVVGYNNIRFDDEVTRNIFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 NRNSRWDLLDIMRACYALRPEGINWPENDDGLPSFRLEHLTRANGIEHSNAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF ++LS R K + I P +P +I+ MF + S + P+
Sbjct: 189 TIAMAKLVKAAQPRLFEYLLSHRSKHKLTTLIDVPQMKPLVHISGMFGAWRGNTSWVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R+ L KN + +P+ ++H+N+ P V
Sbjct: 249 AWHPDNRNAVIMVDLAGDISPLLELDSDTLRERLYTPKNELGDLPAVPVKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL-ELNIDE 668
++ L R + N+K + N + +K+ + + N+D
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKV---LRENPEVREKVVAIFAEAEPFVASENVDA 364
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
+LYN F S D + I+ + P+ L ++ F +K++E+L+F YRARN+ TL E +
Sbjct: 365 QLYNGFFSDADRTAMNIILNTEPRNLPALDITFADKRIEKLMFNYRARNYPGTLDEVEQE 424
Query: 729 RWKKYRISRFYNKKNNLYNINMFYLEIESLLKK--ANEHDTKILNALLMYGK 778
RW ++R + F + + + E+ESL + N +L AL Y +
Sbjct: 425 RWLQHRRNVFTPEY-----LQHYAQELESLYNQYEGNAEKQALLKALFQYAQ 471
>gi|419914251|ref|ZP_14432655.1| exonuclease I [Escherichia coli KD1]
gi|388387299|gb|EIL48922.1| exonuclease I [Escherichia coli KD1]
Length = 475
Score = 323 bits (827), Expect = 6e-85, Method: Composition-based stats.
Identities = 165/431 (38%), Positives = 249/431 (57%), Gaps = 7/431 (1%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSFFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + + + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTTWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDLELNID 667
V++ L R + N+K + N + +K+ + + N+D
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSENVD 364
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LYN F S D + I+ P+ LS ++ F +K++E+L+F YRARNF TL Y E
Sbjct: 365 AQLYNGFFSDADRAAMKIVLETEPRNLSALDITFVDKRIEKLLFNYRARNFPGTLDYAEQ 424
Query: 728 KRWKKYRISRF 738
+RW ++R F
Sbjct: 425 QRWLEHRRQVF 435
>gi|373467234|ref|ZP_09558534.1| exodeoxyribonuclease I [Haemophilus sp. oral taxon 851 str. F0397]
gi|371759032|gb|EHO47783.1| exodeoxyribonuclease I [Haemophilus sp. oral taxon 851 str. F0397]
Length = 473
Score = 323 bits (827), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 165/427 (38%), Positives = 246/427 (57%), Gaps = 7/427 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YDYE+FG+N DRP QFA IRTD N I PIM YCK D+LP P A ++T I
Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C G+ E +FA+ I F +P T +GYN I +DDE+TR+ F+RN I+PYE WK
Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI W Y ++G PSF+LE L+ N ++H+ AHDA++DV A
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANAIAHENAHDAMADVYA 185
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF + R KK + + P +++ M + + + P+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMSPLVHVSGMLGNYRGNCTWVAPL 245
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLNRSP 607
HP N+N LI +L D L +++R L KK +E +P+ ++H+N+ P
Sbjct: 246 AWHPTNQNALIVCDLTGDIDNLLAKSADELRADLYTKKLELEERGVSSVPLKLVHINKCP 305
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
I ++ K L R D N+ + + IF + + S+ N++
Sbjct: 306 I-LAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIRAKVADIFNEERQFESN--DNVE 362
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
ELYN F S D ++ILRS+ +KL+ FE+K++ EL+F YRAR+F +TL+ E
Sbjct: 363 TELYNGFFSNADKNNMSILRSLPAEKLAEHGLAFEDKRIPELLFHYRARHFYKTLTRAEQ 422
Query: 728 KRWKKYR 734
+W+KYR
Sbjct: 423 IKWQKYR 429
>gi|333984013|ref|YP_004513223.1| exodeoxyribonuclease I [Methylomonas methanica MC09]
gi|333808054|gb|AEG00724.1| Exodeoxyribonuclease I [Methylomonas methanica MC09]
Length = 480
Score = 323 bits (827), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 176/472 (37%), Positives = 273/472 (57%), Gaps = 15/472 (3%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
+T+ W+DYETFG + +RDR QFA IRTD N I P+MLYCK A D+LP+P ACLIT
Sbjct: 4 TTYYWHDYETFGTDPQRDRACQFAGIRTDPDFNVIGEPLMLYCKTADDYLPNPEACLITG 63
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G+ E +F +II + + GT +GYN+I FDDE+TR + +RN +PY REW
Sbjct: 64 ITPQLASEKGVCEAEFIAIIHEELSQAGTCGIGYNSIRFDDEVTRNLLYRNFYDPYAREW 123
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+N SRWDLI+V +A L P GI WP ++G SF+LE L+ N +SH+ AHDALSDV
Sbjct: 124 QNGNSRWDLIDVARATRALRPDGIHWPVNDDGTASFRLEVLTQANGISHQAAHDALSDVY 183
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LARLI+ P+L++++ + R K VL + P +++ F ++ + ++++ P
Sbjct: 184 ATIALARLIKQKQPKLYDYLYANRHKPAVLNLLQLGSFTPLVHVSGRFPARTNCLAIVVP 243
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP N N +I ++L DP L +I+ + + E IP+ +H+N+SP
Sbjct: 244 LYAHPRNSNEVIVYDLSVDPAPLLELSAEEIQQRVFVANDDLPEGVARIPLKTVHINKSP 303
Query: 608 IVISNLKVLSSNLMFRYKFDL-NCA--FKNIKCASSILNNTYIWKKIFLDYKINNSDLEL 664
V++ LKV+ N R + DL C + IK A+ + +K+ + +D
Sbjct: 304 -VLAPLKVIRQNDAQRLELDLAQCRLHLERIKSAAG----KSLEQKLATVFTREYADTPD 358
Query: 665 NIDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
+ D +Y+ F S KD + +R P++L+ + F++ +L E++F YR RN+ TL+
Sbjct: 359 DPDVMIYSGGFFSHKDKNAMQKIRQTPPERLAILGADFDDARLPEMLFRYRGRNYPHTLN 418
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKK--ANEHDTKILNAL 773
E +RW+++ R + N+ N+ F +++L K AN+ K L A
Sbjct: 419 QDENQRWQQFCRDRLIDPANSC-NLTWFNEYLQTLQSKPDANQQLLKELQAF 469
>gi|300926502|ref|ZP_07142295.1| exonuclease [Escherichia coli MS 182-1]
gi|300417463|gb|EFK00774.1| exonuclease [Escherichia coli MS 182-1]
Length = 499
Score = 323 bits (827), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 170/444 (38%), Positives = 258/444 (58%), Gaps = 15/444 (3%)
Query: 303 DILLHNG--NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFL 360
++++++G STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+L
Sbjct: 23 NLMMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYL 82
Query: 361 PDPRACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWR 420
P P A LIT ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+R
Sbjct: 83 PQPGAVLITGITPQEARAKGENEAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYR 142
Query: 421 NLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHK 480
N +PY W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H
Sbjct: 143 NFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHS 202
Query: 481 KAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSS 540
AHDA++DV AT+ +A+L++ PRLF ++ + R K ++A I P +P +++ MF +
Sbjct: 203 NAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGA 262
Query: 541 KHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPI 598
S + P+ HP N+N +I +L D L D + +R+ L K ++ +P+
Sbjct: 263 WRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPV 322
Query: 599 SMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDY 655
++H+N+ P V++ L R + N+K + N + +K IF +
Sbjct: 323 KLVHINKCP-VLAQANTLRPEDADRLGINRQHCLNNLKI---LRENPQVREKVVAIFAEA 378
Query: 656 K-INNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYR 714
+ SD N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YR
Sbjct: 379 EPFTPSD---NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYR 435
Query: 715 ARNFIETLSYKELKRWKKYRISRF 738
ARNF TL Y E +RW ++R F
Sbjct: 436 ARNFPGTLDYAEQQRWLEHRRQVF 459
>gi|261494569|ref|ZP_05991051.1| exodeoxyribonuclease I [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261309760|gb|EEY10981.1| exodeoxyribonuclease I [Mannheimia haemolytica serotype A2 str.
OVINE]
Length = 515
Score = 323 bits (827), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 180/520 (34%), Positives = 283/520 (54%), Gaps = 23/520 (4%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F +YDYE+FG++ DRP QFA IRTD N I P+M +CK PD+LP P A ++T I
Sbjct: 6 SFFFYDYESFGVSPALDRPAQFAGIRTDADFNIIGEPVMFFCKQTPDYLPSPEAVMVTGI 65
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C G+ E +FA+ I F + T ++GYN I +DDE+TR+ F+RN +PYE WK
Sbjct: 66 TPQQCNAEGVSEPEFAARIHAEFSRANTCTIGYNNIRYDDEMTRYTFFRNFYDPYEYSWK 125
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI WP G PSFKLE+L+ N ++H+ AHDA+SDV A
Sbjct: 126 NGNSRWDLLDLVRACYALRPDGIEWPTDETGMPSFKLENLTKANGIAHENAHDAMSDVYA 185
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF+F +LR KK V I P +++ M + + + P+
Sbjct: 186 TIAMAKLIKQKQPKLFDFFFNLRSKKEVEKLIDTGEMTPLVHVSGMLGNYRGNTAWVVPL 245
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
H N+N +I +L D L + +R L K++ E+ +P+ ++H+N+ PI
Sbjct: 246 AWHSTNQNAVIVCDLSGDMNGLLTENAEVLRQRLYTKRDELAENELSVPLKLVHINKCPI 305
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
+ +L N R D +N+K + + I +K+ + + + N++
Sbjct: 306 LAPAKTLLPENAE-RLGIDRALCLENLKTLKA--QKSLIREKVIEIFNEERTFEPSTNVE 362
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY+ F S D +AILR++ P+ L+N FE+ ++E L+F YRAR++ +TLS E
Sbjct: 363 TTLYDGFFSPADKNNMAILRTLPPEDLANHGLKFEDPRVEALLFHYRARHYPQTLSRAEQ 422
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKA--NEHDTKILNALLMYGK--IDGSS 783
+W+K+ + K F I+ L ++ N K+L L Y + +
Sbjct: 423 IKWQKHCNQQIEAK------AEQFAQSIDDLFQQHHDNPEKVKLLENLTAYAEQISQQQA 476
Query: 784 CIYRAFYA-----LPDIRNIDNFPVGALYGTIKMLRKLYK 818
IYR A L ++ + P+ +KML++L K
Sbjct: 477 VIYRQNVAKDEKLLSELNRVAEQPLDKT-EKLKMLKELIK 515
>gi|260868731|ref|YP_003235133.1| exonuclease I [Escherichia coli O111:H- str. 11128]
gi|415823133|ref|ZP_11511652.1| exodeoxyribonuclease I [Escherichia coli OK1180]
gi|417192210|ref|ZP_12014310.1| exodeoxyribonuclease I [Escherichia coli 4.0522]
gi|417592274|ref|ZP_12242971.1| exodeoxyribonuclease I [Escherichia coli 2534-86]
gi|419896480|ref|ZP_14416165.1| exonuclease I [Escherichia coli O111:H8 str. CVM9574]
gi|257765087|dbj|BAI36582.1| exonuclease I [Escherichia coli O111:H- str. 11128]
gi|323177088|gb|EFZ62678.1| exodeoxyribonuclease I [Escherichia coli OK1180]
gi|345338611|gb|EGW71038.1| exodeoxyribonuclease I [Escherichia coli 2534-86]
gi|386191092|gb|EIH79838.1| exodeoxyribonuclease I [Escherichia coli 4.0522]
gi|388357633|gb|EIL22175.1| exonuclease I [Escherichia coli O111:H8 str. CVM9574]
Length = 474
Score = 323 bits (827), Expect = 6e-85, Method: Composition-based stats.
Identities = 166/433 (38%), Positives = 249/433 (57%), Gaps = 13/433 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT I
Sbjct: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P+
Sbjct: 189 TIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P V
Sbjct: 249 AWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLELN 665
++ L R + N+K + N + +K+ + SD N
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD---N 361
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 VDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYA 421
Query: 726 ELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 EQQRWLEHRRQVF 434
>gi|432955454|ref|ZP_20147394.1| exodeoxyribonuclease I [Escherichia coli KTE197]
gi|431468125|gb|ELH48131.1| exodeoxyribonuclease I [Escherichia coli KTE197]
Length = 475
Score = 323 bits (827), Expect = 6e-85, Method: Composition-based stats.
Identities = 175/476 (36%), Positives = 267/476 (56%), Gaps = 20/476 (4%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMNPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI--LNALLMYGK 778
E +RW ++R F ++ + + EI+ L ++ + K+ L AL Y +
Sbjct: 422 AEQQRWLEHRRQIFTSE-----FLQGYAEEIQMLAQQYADDKEKVALLKALWQYAE 472
>gi|419809136|ref|ZP_14334022.1| exonuclease I [Escherichia coli O32:H37 str. P4]
gi|385158066|gb|EIF20056.1| exonuclease I [Escherichia coli O32:H37 str. P4]
Length = 474
Score = 323 bits (827), Expect = 6e-85, Method: Composition-based stats.
Identities = 166/434 (38%), Positives = 249/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ M + S + P
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMLGAWRGNTSWVAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 361 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 420
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 421 AEQQRWLEHRRQVF 434
>gi|312973748|ref|ZP_07787920.1| exodeoxyribonuclease I [Escherichia coli 1827-70]
gi|417272110|ref|ZP_12059459.1| exodeoxyribonuclease I [Escherichia coli 2.4168]
gi|425115402|ref|ZP_18517207.1| exonuclease [Escherichia coli 8.0566]
gi|425120121|ref|ZP_18521824.1| exodeoxyribonuclease I [Escherichia coli 8.0569]
gi|310332343|gb|EFP99578.1| exodeoxyribonuclease I [Escherichia coli 1827-70]
gi|345432835|dbj|BAK69162.1| exonuclease I [Escherichia coli O157:H43]
gi|386235810|gb|EII67786.1| exodeoxyribonuclease I [Escherichia coli 2.4168]
gi|408568920|gb|EKK44934.1| exonuclease [Escherichia coli 8.0566]
gi|408570373|gb|EKK46352.1| exodeoxyribonuclease I [Escherichia coli 8.0569]
Length = 475
Score = 323 bits (827), Expect = 6e-85, Method: Composition-based stats.
Identities = 166/434 (38%), Positives = 249/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ M + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMLGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|417756141|ref|ZP_12404219.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC2B]
gi|418997208|ref|ZP_13544805.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC1A]
gi|419002509|ref|ZP_13550041.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC1B]
gi|419008135|ref|ZP_13555570.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC1C]
gi|419018711|ref|ZP_13566021.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC1E]
gi|419029399|ref|ZP_13576569.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC2C]
gi|419035046|ref|ZP_13582134.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC2D]
gi|419040036|ref|ZP_13587070.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC2E]
gi|377844747|gb|EHU09781.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC1A]
gi|377845103|gb|EHU10128.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC1C]
gi|377848579|gb|EHU13562.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC1B]
gi|377861572|gb|EHU26390.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC1E]
gi|377874978|gb|EHU39599.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC2B]
gi|377878961|gb|EHU43536.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC2C]
gi|377880605|gb|EHU45172.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC2D]
gi|377892631|gb|EHU57076.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC2E]
Length = 474
Score = 323 bits (827), Expect = 6e-85, Method: Composition-based stats.
Identities = 165/431 (38%), Positives = 249/431 (57%), Gaps = 7/431 (1%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDLELNID 667
V++ L R + N+K + N + +K+ + + N+D
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSENVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y E
Sbjct: 364 AQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQ 423
Query: 728 KRWKKYRISRF 738
+RW ++R F
Sbjct: 424 QRWLEHRRQVF 434
>gi|215487234|ref|YP_002329665.1| exonuclease I [Escherichia coli O127:H6 str. E2348/69]
gi|312967244|ref|ZP_07781460.1| exodeoxyribonuclease I [Escherichia coli 2362-75]
gi|419024385|ref|ZP_13571613.1| exodeoxyribonuclease I [Escherichia coli DEC2A]
gi|215265306|emb|CAS09701.1| exonuclease I [Escherichia coli O127:H6 str. E2348/69]
gi|312288052|gb|EFR15956.1| exodeoxyribonuclease I [Escherichia coli 2362-75]
gi|377864005|gb|EHU28804.1| exodeoxyribonuclease I [Escherichia coli DEC2A]
Length = 475
Score = 323 bits (827), Expect = 6e-85, Method: Composition-based stats.
Identities = 165/431 (38%), Positives = 249/431 (57%), Gaps = 7/431 (1%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDLELNID 667
V++ L R + N+K + N + +K+ + + N+D
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSENVD 364
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y E
Sbjct: 365 AQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQ 424
Query: 728 KRWKKYRISRF 738
+RW ++R F
Sbjct: 425 QRWLEHRRQVF 435
>gi|300936684|ref|ZP_07151588.1| exonuclease [Escherichia coli MS 21-1]
gi|300458265|gb|EFK21758.1| exonuclease [Escherichia coli MS 21-1]
Length = 474
Score = 323 bits (827), Expect = 6e-85, Method: Composition-based stats.
Identities = 165/433 (38%), Positives = 249/433 (57%), Gaps = 13/433 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT I
Sbjct: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P+
Sbjct: 189 TIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R+ L + ++ +P+ ++H+N+ P V
Sbjct: 249 AWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTARADLGDNAAVPVKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLELN 665
++ L R + N+K + N + +K+ + SD N
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD---N 361
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 VDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYA 421
Query: 726 ELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 EQQRWLEHRRQVF 434
>gi|152980489|ref|YP_001352013.1| DNA polymerase I [Janthinobacterium sp. Marseille]
gi|151280566|gb|ABR88976.1| DNA polymerase I [Janthinobacterium sp. Marseille]
Length = 912
Score = 323 bits (827), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 146/269 (54%), Positives = 206/269 (76%), Gaps = 4/269 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNY-RATYIACIFDAKGKNFR 837
+DGSS +YRAF+A+PD+R + P GA+YG I MLR+L K+Y A Y+AC+FDAKGK FR
Sbjct: 3 VDGSSYLYRAFHAMPDLRGPNGAPTGAIYGMINMLRRLRKDYPDAEYMACVFDAKGKTFR 62
Query: 838 NILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHN 897
+ LY YKA R MP +L+ QI IH+ V+A+GWPIL+++G+EADDVIGTLA +AV KH
Sbjct: 63 DDLYAEYKAQRASMPDDLVKQIEPIHEAVRAMGWPILMVEGIEADDVIGTLAVEAV-KHG 121
Query: 898 LKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDN 955
+ +IST DKD+AQLV++++ LIN +N+ DR +I++FGV PE+I+DY +LIGD DN
Sbjct: 122 MDTVISTGDKDLAQLVNDRVMLINTMSNEKLDRDGVIAKFGVPPERIIDYLTLIGDTVDN 181
Query: 956 LPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDC 1015
+PGV K+GPKTAVK L QY +L+ I+ +A +IKG +G NLR AL+WLP+ K ++T+KTDC
Sbjct: 182 VPGVDKVGPKTAVKWLTQYGTLDGIVEHAADIKGAVGDNLRRALDWLPQAKTLITVKTDC 241
Query: 1016 DLTKNIVSIPESLILQPKDEKLLMQLFNK 1044
DL+ ++ +I ESL +P+D+ ++ F +
Sbjct: 242 DLSGHMDTIVESLTQRPEDKDAMIDFFTR 270
>gi|432485825|ref|ZP_19727741.1| exodeoxyribonuclease I [Escherichia coli KTE212]
gi|433173934|ref|ZP_20358464.1| exodeoxyribonuclease I [Escherichia coli KTE232]
gi|431016222|gb|ELD29769.1| exodeoxyribonuclease I [Escherichia coli KTE212]
gi|431692692|gb|ELJ58117.1| exodeoxyribonuclease I [Escherichia coli KTE232]
Length = 474
Score = 322 bits (826), Expect = 7e-85, Method: Composition-based stats.
Identities = 166/433 (38%), Positives = 249/433 (57%), Gaps = 13/433 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT I
Sbjct: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P+
Sbjct: 189 TIAMAKLVKTRQPRLFDYLYTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P V
Sbjct: 249 AWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNTAVPVKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLELN 665
++ L R + N+K + N + +K+ + SD N
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD---N 361
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 VDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYA 421
Query: 726 ELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 EQQRWLEHRRQVF 434
>gi|331658092|ref|ZP_08359054.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli TA206]
gi|331056340|gb|EGI28349.1| exodeoxyribonuclease I (Exonuclease I)
(DNAdeoxyribophosphodiesterase) (dRPase) [Escherichia
coli TA206]
Length = 474
Score = 322 bits (826), Expect = 7e-85, Method: Composition-based stats.
Identities = 165/431 (38%), Positives = 249/431 (57%), Gaps = 7/431 (1%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 68 ITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDLELNID 667
V++ L R + N+K + N + +K+ + + N+D
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSENVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y E
Sbjct: 364 AQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQ 423
Query: 728 KRWKKYRISRF 738
+RW ++R F
Sbjct: 424 QRWLEHRRQVF 434
>gi|222156778|ref|YP_002556917.1| exodeoxyribonuclease I [Escherichia coli LF82]
gi|387617380|ref|YP_006120402.1| exonuclease I [Escherichia coli O83:H1 str. NRG 857C]
gi|387829955|ref|YP_003349892.1| exonuclease I [Escherichia coli SE15]
gi|416339107|ref|ZP_11675045.1| Exodeoxyribonuclease I [Escherichia coli WV_060327]
gi|417286897|ref|ZP_12074184.1| exodeoxyribonuclease I [Escherichia coli TW07793]
gi|432432306|ref|ZP_19674735.1| exodeoxyribonuclease I [Escherichia coli KTE187]
gi|432500508|ref|ZP_19742265.1| exodeoxyribonuclease I [Escherichia coli KTE216]
gi|432554105|ref|ZP_19790829.1| exodeoxyribonuclease I [Escherichia coli KTE47]
gi|432694877|ref|ZP_19930078.1| exodeoxyribonuclease I [Escherichia coli KTE162]
gi|432844988|ref|ZP_20077821.1| exodeoxyribonuclease I [Escherichia coli KTE141]
gi|432899042|ref|ZP_20109734.1| exodeoxyribonuclease I [Escherichia coli KTE192]
gi|432919466|ref|ZP_20123597.1| exodeoxyribonuclease I [Escherichia coli KTE173]
gi|432927274|ref|ZP_20128814.1| exodeoxyribonuclease I [Escherichia coli KTE175]
gi|432981449|ref|ZP_20170225.1| exodeoxyribonuclease I [Escherichia coli KTE211]
gi|433028998|ref|ZP_20216858.1| exodeoxyribonuclease I [Escherichia coli KTE109]
gi|433096892|ref|ZP_20283077.1| exodeoxyribonuclease I [Escherichia coli KTE139]
gi|433106313|ref|ZP_20292289.1| exodeoxyribonuclease I [Escherichia coli KTE148]
gi|433208193|ref|ZP_20391867.1| exodeoxyribonuclease I [Escherichia coli KTE97]
gi|222033783|emb|CAP76524.1| exodeoxyribonuclease I [Escherichia coli LF82]
gi|281179112|dbj|BAI55442.1| exonuclease I [Escherichia coli SE15]
gi|312946641|gb|ADR27468.1| exonuclease I [Escherichia coli O83:H1 str. NRG 857C]
gi|320193300|gb|EFW67938.1| Exodeoxyribonuclease I [Escherichia coli WV_060327]
gi|345432781|dbj|BAK69109.1| exonuclease I [Escherichia coli O157:H39]
gi|386249230|gb|EII95401.1| exodeoxyribonuclease I [Escherichia coli TW07793]
gi|430952731|gb|ELC71645.1| exodeoxyribonuclease I [Escherichia coli KTE187]
gi|431028085|gb|ELD41129.1| exodeoxyribonuclease I [Escherichia coli KTE216]
gi|431084292|gb|ELD90458.1| exodeoxyribonuclease I [Escherichia coli KTE47]
gi|431233911|gb|ELF29489.1| exodeoxyribonuclease I [Escherichia coli KTE162]
gi|431394410|gb|ELG77943.1| exodeoxyribonuclease I [Escherichia coli KTE141]
gi|431426694|gb|ELH08738.1| exodeoxyribonuclease I [Escherichia coli KTE192]
gi|431444780|gb|ELH25802.1| exodeoxyribonuclease I [Escherichia coli KTE173]
gi|431445501|gb|ELH26428.1| exodeoxyribonuclease I [Escherichia coli KTE175]
gi|431492204|gb|ELH71807.1| exodeoxyribonuclease I [Escherichia coli KTE211]
gi|431543214|gb|ELI18203.1| exodeoxyribonuclease I [Escherichia coli KTE109]
gi|431615627|gb|ELI84752.1| exodeoxyribonuclease I [Escherichia coli KTE139]
gi|431627340|gb|ELI95748.1| exodeoxyribonuclease I [Escherichia coli KTE148]
gi|431729478|gb|ELJ93097.1| exodeoxyribonuclease I [Escherichia coli KTE97]
Length = 475
Score = 322 bits (826), Expect = 7e-85, Method: Composition-based stats.
Identities = 165/431 (38%), Positives = 249/431 (57%), Gaps = 7/431 (1%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDLELNID 667
V++ L R + N+K + N + +K+ + + N+D
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSENVD 364
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y E
Sbjct: 365 AQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQ 424
Query: 728 KRWKKYRISRF 738
+RW ++R F
Sbjct: 425 QRWLEHRRQVF 435
>gi|332306455|ref|YP_004434306.1| Exodeoxyribonuclease I [Glaciecola sp. 4H-3-7+YE-5]
gi|332173784|gb|AEE23038.1| Exodeoxyribonuclease I [Glaciecola sp. 4H-3-7+YE-5]
Length = 476
Score = 322 bits (826), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 174/474 (36%), Positives = 271/474 (57%), Gaps = 11/474 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+ W+DYET+G+N ++D QFA IRTD+ LN I P+M++ + D+LP P+ACLIT I
Sbjct: 5 SIYWHDYETWGVNPQKDPACQFAGIRTDLDLNIISQPLMIFNQIPNDYLPHPQACLITGI 64
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L +G+ E +F I F + T GYN I FDDE+TR+ +RN +PYEREW+
Sbjct: 65 TPQHSLRDGMIEPEFIEKIHHEFSQAETCVAGYNNIRFDDEVTRYTLYRNFYDPYEREWR 124
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD+I+V++A Y L P GI WP K +G PSFKLE LS NN+ H AHDA+SDV A
Sbjct: 125 NGNSRWDIIDVVRACYALRPDGIEWPLKEDGSPSFKLEDLSKANNIEHSAAHDAMSDVYA 184
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+G+A+L++ P+L++++ +LR KK V+A I P +I+ + + + + PI
Sbjct: 185 TIGVAKLVKTAQPKLYDYLFNLRLKKNVIALIDTQAHTPLVHISSKLPAINGCCTWVAPI 244
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN I NL D + L + +I L N +E +PI ++H+N+SP
Sbjct: 245 AQHPTNKNAFIMLNLSLDIQPLLALSVEEIIQKLYTASNMLEEGEQRLPIKLVHVNKSP- 303
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
V++ K L+ R D +N++ + + + +K+ + N + D
Sbjct: 304 VLAPAKTLNEENAARLGIDRQACLQNLQL---LKQHPELVEKLIKVHHSNTEHVPQEADH 360
Query: 669 ELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY+ F S KD + +R +P++L+++ FE+ +L+ L+F Y+ARNF +L+ +E+
Sbjct: 361 SLYSGGFFSPKDRALMDQVRQSTPEQLADLALPFEDSRLDNLLFYYKARNFPTSLNDQEM 420
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLKK---ANEHDTKILNALLMYGK 778
+RW+ +R R + + Y++ LL + +N IL AL Y +
Sbjct: 421 QRWQNHRKFRLLDDSSPSSITMSDYVQTLELLCEQYHSNSDKLAILKALYTYAE 474
>gi|261492018|ref|ZP_05988593.1| exodeoxyribonuclease I [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261312301|gb|EEY13429.1| exodeoxyribonuclease I [Mannheimia haemolytica serotype A2 str.
BOVINE]
Length = 515
Score = 322 bits (826), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 180/520 (34%), Positives = 283/520 (54%), Gaps = 23/520 (4%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F +YDYE+FG++ DRP QFA IRTD N I P+M +CK PD+LP P A ++T I
Sbjct: 6 SFFFYDYESFGVSPALDRPAQFAGIRTDADFNIIGEPVMFFCKQTPDYLPSPEAVMVTGI 65
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C G+ E +FA+ I F + T ++GYN I +DDE+TR+ F+RN +PYE WK
Sbjct: 66 TPQQCNAEGVSEPEFAARIHAEFSRANTCTIGYNNIRYDDEMTRYTFFRNFYDPYEYSWK 125
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI WP G PSFKLE+L+ N ++H+ AHDA+SDV A
Sbjct: 126 NGNSRWDLLDLVRACYALRPDGIEWPTDETGMPSFKLENLTKANGIAHENAHDAMSDVYA 185
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF+F +LR KK V I P +++ M + + + P+
Sbjct: 186 TIAMAKLIKQKQPKLFDFFFNLRSKKEVEKLIDTGEMTPLVHVSGMLGNYRGNTAWVVPL 245
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
H N+N +I +L D L + +R L K++ E+ +P+ ++H+N+ PI
Sbjct: 246 AWHSTNQNAVIVCDLSGDMNGLLTENAEVLRQRLYTKRDELAENELSVPLKLVHINKCPI 305
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
+ +L N R D +N+K + + I +K+ + + + N++
Sbjct: 306 LAPAKTLLPENAE-RLGIDRALCLENLKTLKA--QKSLIREKVIEIFNEERTFEPSTNVE 362
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY+ F S D +AILR++ P+ L+N FE+ ++E L+F YRAR++ +TLS E
Sbjct: 363 NTLYDGFFSPADKNNMAILRTLPPEDLANHGLKFEDPRVEALLFHYRARHYPQTLSRAEQ 422
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKA--NEHDTKILNALLMYGK--IDGSS 783
+W+K+ + K F I+ L ++ N K+L L Y + +
Sbjct: 423 IKWQKHCNQQIEAK------AEQFAQSIDDLFQQHHDNPEKVKLLENLTAYAEQISQQQA 476
Query: 784 CIYRAFYA-----LPDIRNIDNFPVGALYGTIKMLRKLYK 818
IYR A L ++ + P+ +KML++L K
Sbjct: 477 VIYRQNVAKDEKLLSELNRVAEQPLDKT-EKLKMLKELIK 515
>gi|244539165|dbj|BAH83208.1| exonuclease I [Candidatus Ishikawaella capsulata Mpkobe]
Length = 479
Score = 322 bits (826), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 180/432 (41%), Positives = 251/432 (58%), Gaps = 6/432 (1%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
+ FL+YDYETFG N DRP QFA++RTDI N I+ P +CK A D+LP P A ++T
Sbjct: 13 TNFLFYDYETFGKNTSLDRPAQFASLRTDINFNIIEKPQKFFCKLADDYLPQPEAVMVTG 72
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ N G+PE +FA I I K T +GYN I FDDE+TR +F+RN +PY W
Sbjct: 73 ITPQIVQNQGVPEVEFAKRIHSILTKSNTCIIGYNNIHFDDEMTRNIFYRNFYDPYAWTW 132
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
KNN SRWDL+NV++ Y L P GI WP + NG PSF+LEHL+ N ++H KAHDA+SDV
Sbjct: 133 KNNNSRWDLLNVMRTCYALRPNGIIWPKRENGLPSFRLEHLTKANGITHNKAHDAISDVH 192
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LA+L++ P LF+F+ + R+K+ + I P +P Y+++ S+ SL+ P
Sbjct: 193 ATVELAKLVKKKQPNLFDFLFNHRQKQQLRMLIDLPHMQPLVYVSNTISTLQRNTSLVAP 252
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDIPISMIHLNRSPIVI 610
IC HP N N LI +L D L DI +R + +K + F E IP +I+LN+ PI +
Sbjct: 253 ICWHPHNFNYLIIIDLTKDVSVLLDIDIKTLRKNI-YKSSLFNEIIPTQVINLNKCPI-L 310
Query: 611 SNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF-LDYKINNSDLELNIDEE 669
+ L R D N+ N I KI + + L N+D +
Sbjct: 311 APANTLRIEDTIRLNIDRQQCIDNLLLLRKSPN---IRNKILEIHSQFKPKILSNNVDTQ 367
Query: 670 LYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKR 729
LY F + D + + I+ P L +N F +K+L++L+F YRARNF +TLS KE K
Sbjct: 368 LYKGFFNNFDQVNMKIIHKTEPINLRLLNIQFNDKRLDKLLFRYRARNFPKTLSNKEKKL 427
Query: 730 WKKYRISRFYNK 741
W +++ F+ K
Sbjct: 428 WFQHKKKIFHPK 439
>gi|417841602|ref|ZP_12487705.1| Exodeoxyribonuclease I [Haemophilus haemolyticus M19501]
gi|341948823|gb|EGT75438.1| Exodeoxyribonuclease I [Haemophilus haemolyticus M19501]
Length = 473
Score = 322 bits (826), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 165/427 (38%), Positives = 245/427 (57%), Gaps = 7/427 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YDYE+FG+N DRP QFA IRTD N I PIM YCK D+LP P A ++T I
Sbjct: 6 SFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGI 65
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C G+ E +FA+ I F +P T +GYN I +DDE+TR+ F+RN I+PYE WK
Sbjct: 66 TPQECNEKGLSEPEFAANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWK 125
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI W Y ++G PSF+LE L+ N + H+ AHDA++DV A
Sbjct: 126 NGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSFRLEKLTKANGIEHENAHDAMADVYA 185
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF + R KK + + P +++ M + + + P+
Sbjct: 186 TIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGAMTPLVHVSGMLGNYRGNCTWVAPL 245
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLNRSP 607
HP N+N LI +L D L +++R L KK +E +P+ ++H+N+ P
Sbjct: 246 AWHPTNQNALIVCDLTGDINNLLAKSADELRADLYTKKLELEERGVSSVPLKLVHINKCP 305
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
I ++ K L R D N+ + + IF + + S+ N++
Sbjct: 306 I-LAPAKTLLPETANRLGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFESN--DNVE 362
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
ELYN F S D ++ILRS+ +KL+ FE+K++ EL+F YRAR+F +TL+ E
Sbjct: 363 TELYNGFFSNADKNNMSILRSLPAEKLAEHGLAFEDKRIPELLFHYRARHFYKTLTRAEQ 422
Query: 728 KRWKKYR 734
+W+KYR
Sbjct: 423 IKWQKYR 429
>gi|387888784|ref|YP_006319082.1| exodeoxyribonuclease I [Escherichia blattae DSM 4481]
gi|414592850|ref|ZP_11442499.1| exodeoxyribonuclease I [Escherichia blattae NBRC 105725]
gi|386923617|gb|AFJ46571.1| exodeoxyribonuclease I [Escherichia blattae DSM 4481]
gi|403196331|dbj|GAB80151.1| exodeoxyribonuclease I [Escherichia blattae NBRC 105725]
Length = 475
Score = 322 bits (826), Expect = 7e-85, Method: Composition-based stats.
Identities = 174/476 (36%), Positives = 260/476 (54%), Gaps = 15/476 (3%)
Query: 307 HNGNS-TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRA 365
H N TFL++DYETFG + DRP QF A+RTD+ N I P + +C+PA D+LP P A
Sbjct: 3 HQDNPPTFLFHDYETFGTSPSLDRPAQFGALRTDMDFNIIGEPEVFFCRPADDYLPQPGA 62
Query: 366 CLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINP 425
++T ITPQ L G E FA I IF PGT VGYN + FDDE+TR +F+RN +P
Sbjct: 63 VMVTGITPQQALAQGENEAHFARRIHDIFTVPGTCVVGYNNVRFDDEVTRNIFYRNFYDP 122
Query: 426 YEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDA 485
Y W+N SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA
Sbjct: 123 YAWSWQNGNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTAANGIEHANAHDA 182
Query: 486 LSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYI 545
++DV AT+ +AR I+ + PRLF+++L+ R K+ + I +P +++ MF +
Sbjct: 183 MADVYATIAMARKIKASQPRLFDYLLNYRGKQKLATLIDIVQMQPLVHVSGMFGAWRGNT 242
Query: 546 SLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHL 603
SL+ P+ HP N+N +I +L D D + +R+ L K+ + +P+ ++HL
Sbjct: 243 SLIAPLAWHPDNRNAVIVVDLAADISPLFDLDADALRERLYTPKSELGDALPVPVKLVHL 302
Query: 604 NRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDL 662
N+ P++ + L R D N+ + N + +KI Y + +
Sbjct: 303 NKCPVLAKD-NALRPQDAQRLGIDRQHCMDNLALLRA---NPQLREKIVALYARAEPFAV 358
Query: 663 ELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
N+D +LYN F D + I+ P+ L ++ F +K++E+L+F YRARNF TL
Sbjct: 359 PDNVDSQLYNGFFGDADKTAMKIILETEPQNLPALDITFADKRIEKLLFNYRARNFPGTL 418
Query: 723 SYKELKRWKKYRISRFYNKKNNLY--NINMFYLEIESLLKKANEHDTKILNALLMY 776
S E +RW ++R F Y + M Y + E + +L AL Y
Sbjct: 419 SEAEQQRWLEHRREVFSPGALEAYARELEMLYTQYE-----GDGEKIALLKALYQY 469
>gi|300903879|ref|ZP_07121780.1| exonuclease [Escherichia coli MS 84-1]
gi|301307139|ref|ZP_07213168.1| exonuclease [Escherichia coli MS 124-1]
gi|415866496|ref|ZP_11539005.1| exonuclease [Escherichia coli MS 85-1]
gi|300404137|gb|EFJ87675.1| exonuclease [Escherichia coli MS 84-1]
gi|300837654|gb|EFK65414.1| exonuclease [Escherichia coli MS 124-1]
gi|315253362|gb|EFU33330.1| exonuclease [Escherichia coli MS 85-1]
Length = 499
Score = 322 bits (826), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 176/486 (36%), Positives = 276/486 (56%), Gaps = 22/486 (4%)
Query: 303 DILLHNG--NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFL 360
++++++G STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+L
Sbjct: 23 NLMMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYL 82
Query: 361 PDPRACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWR 420
P P A LIT ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+R
Sbjct: 83 PQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYR 142
Query: 421 NLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHK 480
N +PY W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H
Sbjct: 143 NFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHS 202
Query: 481 KAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSS 540
AHDA++DV AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF +
Sbjct: 203 NAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGA 262
Query: 541 KHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPI 598
S + P+ HP N+N +I +L D L D + +R+ L K ++ +P+
Sbjct: 263 WRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPV 322
Query: 599 SMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDY 655
++H+N+ P V++ L R + N+K + N + ++ IF +
Sbjct: 323 KLVHINKCP-VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREEVVAIFAEA 378
Query: 656 K-INNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYR 714
+ SD N+D +LY+ F S D + I+ P+ L ++ F +K++E+L+F YR
Sbjct: 379 EPFTPSD---NVDAQLYSGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYR 435
Query: 715 ARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI--LNA 772
ARNF TL Y E +RW ++R F + + + EI+ L ++ + K+ L A
Sbjct: 436 ARNFPGTLDYAEQQRWLEHRRQVFTPEF-----LQGYAEEIQMLAQQYADDKEKVALLKA 490
Query: 773 LLMYGK 778
L Y +
Sbjct: 491 LWQYAE 496
>gi|254362095|ref|ZP_04978217.1| exodeoxyribonuclease I [Mannheimia haemolytica PHL213]
gi|452744577|ref|ZP_21944420.1| exonuclease I [Mannheimia haemolytica serotype 6 str. H23]
gi|153093654|gb|EDN74613.1| exodeoxyribonuclease I [Mannheimia haemolytica PHL213]
gi|452087353|gb|EME03733.1| exonuclease I [Mannheimia haemolytica serotype 6 str. H23]
Length = 515
Score = 322 bits (826), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 180/520 (34%), Positives = 283/520 (54%), Gaps = 23/520 (4%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F +YDYE+FG++ DRP QFA IRTD N I P+M +CK PD+LP P A ++T I
Sbjct: 6 SFFFYDYESFGVSPALDRPAQFAGIRTDADFNIIGEPVMFFCKQTPDYLPSPEAVMVTGI 65
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C G+ E +FA+ I F + T ++GYN I +DDE+TR+ F+RN +PYE WK
Sbjct: 66 TPQQCNAEGVSEPEFAARIHAEFSRANTCTIGYNNIRYDDEMTRYTFFRNFYDPYEYSWK 125
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI WP G PSFKLE+L+ N ++H+ AHDA+SDV A
Sbjct: 126 NGNSRWDLLDLVRACYALRPDGIEWPTDETGMPSFKLENLTKANGIAHENAHDAMSDVYA 185
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF+F +LR KK V I P +++ M + + + P+
Sbjct: 186 TIAMAKLIKQKQPKLFDFFFNLRSKKEVEKLIDTGEMTPLVHVSGMLGNYRGNTAWVVPL 245
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
H N+N +I +L D L + +R L K++ E+ +P+ ++H+N+ PI
Sbjct: 246 AWHSTNQNAVIVCDLSGDMNGLLTENAEVLRQRLYTKRDELAENELPVPLKLVHINKCPI 305
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
+ +L N R D +N+K + + I +K+ + + + N++
Sbjct: 306 LAPAKTLLPENAE-RLGIDRALCLENLKTLKA--QKSLIREKVIEIFNEERTFEPSTNVE 362
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY+ F S D +AILR++ P+ L+N FE+ ++E L+F YRAR++ +TLS E
Sbjct: 363 TTLYDGFFSPADKNNMAILRTLPPEDLANHGLKFEDPRVEALLFHYRARHYPQTLSRAEQ 422
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKA--NEHDTKILNALLMYGK--IDGSS 783
+W+K+ + K F I+ L ++ N K+L L Y + +
Sbjct: 423 IKWQKHCNQQIEAK------AAQFAQSIDDLFQQHHDNPEKVKLLENLTAYAEQISQQQA 476
Query: 784 CIYRAFYA-----LPDIRNIDNFPVGALYGTIKMLRKLYK 818
IYR A L ++ + P+ +KML++L K
Sbjct: 477 VIYRQNVAKDEKLLSELNRVAEQPLDKT-EKLKMLKELIK 515
>gi|418943655|ref|ZP_13496822.1| exonuclease I, partial [Escherichia coli O157:H43 str. T22]
gi|375321050|gb|EHS66928.1| exonuclease I, partial [Escherichia coli O157:H43 str. T22]
Length = 437
Score = 322 bits (826), Expect = 8e-85, Method: Composition-based stats.
Identities = 166/434 (38%), Positives = 249/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ M + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMLGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|425305600|ref|ZP_18695321.1| exonuclease [Escherichia coli N1]
gi|408228991|gb|EKI52483.1| exonuclease [Escherichia coli N1]
Length = 474
Score = 322 bits (826), Expect = 8e-85, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 249/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF ++ + R K ++A I P +P +++ MF + S + P
Sbjct: 188 ATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLNNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 361 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 420
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 421 AEQQRWLEHRRQVF 434
>gi|387119898|ref|YP_006285781.1| exodeoxyribonuclease I [Aggregatibacter actinomycetemcomitans
D7S-1]
gi|385874390|gb|AFI85949.1| exodeoxyribonuclease I [Aggregatibacter actinomycetemcomitans
D7S-1]
Length = 474
Score = 322 bits (826), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 167/426 (39%), Positives = 244/426 (57%), Gaps = 7/426 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YDYE+FG+N +DRP QF IRTD N I PI+LYCK D+LP P A L+T I
Sbjct: 7 SFFIYDYESFGVNPAKDRPAQFGGIRTDADFNIIGEPIVLYCKQTNDYLPAPEAVLVTGI 66
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C G+ E +FA+ I + F +P T +G+N I +DDE+TR+ F+RN I+PYE WK
Sbjct: 67 TPQECNEKGLSEPEFAAKILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWK 126
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI WP + G PSF+LE L+ N ++H AHDA+SDV A
Sbjct: 127 NGNSRWDLLDLVRACYALRPDGIEWPLDDEGMPSFRLEKLTEANGIAHDNAHDAMSDVYA 186
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF + R KK V I P +++ M + +L+ +
Sbjct: 187 TIEMAKLIKQKQPKLFQYFFENRGKKEVEKLIDTAEMTPLVHVSGMLGNYRGNTTLIASL 246
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLNRSP 607
HP NKN +I +L + L + ++R+ L KK + +P+ +IH+N+ P
Sbjct: 247 AWHPTNKNAVIVCDLTANIDDLLTKSVEELRENLYTKKETLLAAGALPVPLKLIHINKCP 306
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
IV +L N R D KN + + IF ++ D N++
Sbjct: 307 IVAPAKTLLPQNAE-RLGIDQELCAKNRQRLQEARDIRQKVMDIF--HQEREFDASDNVE 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LYN F S D +AILRS+ P+KL+ N F++ ++ EL+F YRAR+F TL+ E
Sbjct: 364 TKLYNGFFSDADKNNMAILRSLEPEKLAKHNLSFQDPRIPELLFHYRARHFYRTLNRAEQ 423
Query: 728 KRWKKY 733
+W+KY
Sbjct: 424 IKWQKY 429
>gi|417291312|ref|ZP_12078593.1| exodeoxyribonuclease I [Escherichia coli B41]
gi|386253634|gb|EIJ03324.1| exodeoxyribonuclease I [Escherichia coli B41]
Length = 475
Score = 322 bits (825), Expect = 9e-85, Method: Composition-based stats.
Identities = 166/434 (38%), Positives = 248/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E F + I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFTARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF ++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|308049114|ref|YP_003912680.1| exodeoxyribonuclease I subunit C [Ferrimonas balearica DSM 9799]
gi|307631304|gb|ADN75606.1| Exodeoxyribonuclease I subunit C [Ferrimonas balearica DSM 9799]
Length = 470
Score = 322 bits (825), Expect = 9e-85, Method: Composition-based stats.
Identities = 169/473 (35%), Positives = 268/473 (56%), Gaps = 16/473 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+ T LW+DYET+G +V RDRP QFA IRTD+ LN I+ P+ YC+ D+LP P A L+T
Sbjct: 4 DETLLWHDYETWGADVARDRPAQFAGIRTDLDLNIIEEPVEYYCRLPADYLPKPEAMLVT 63
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G E +F + + + +P T +VGYN+I FDDEITR+ +RN +PY RE
Sbjct: 64 GITPQKANRLGEVEAQFIARVHEQMARPNTCTVGYNSIRFDDEITRYALYRNFFDPYARE 123
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+N SRWD+I++++A Y L P GI WP + +G PSFKLEHL+ N + H AHDA+SDV
Sbjct: 124 WQNGNSRWDIIDLVRACYALRPEGIVWPEREDGAPSFKLEHLTAANGIGHDSAHDAVSDV 183
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
+AT+ LA+LI+ P+L+ + LR K++ ++I +P +++ F + SL+
Sbjct: 184 KATIALAKLIKTTQPKLYEWAFRLRNKRFAASQIDILALKPLLHVSSRFPASQGCASLVL 243
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFK---KNSFKEDIPISMIHLNRS 606
P+ HP NKN + +L DP L DI ++ L K + + +P+ ++H+N+S
Sbjct: 244 PMAWHPENKNAVACVDLAMDPTPLLEWDIETLKAKLYQKAVDRTEGEPRVPVKLVHMNKS 303
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYKINNSDLE 663
P + + +N R D ++ K ++ + +K +F D + +
Sbjct: 304 PFIAPASSLEDANAE-RLGLDKAACREHYKLLRQ--HHAEVREKLHGLFSDDAPPQREPD 360
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
N D +LY F S+ D ++ ++RS +P+ L+ + F + +L +L F YRARN+ TLS
Sbjct: 361 -NPDVQLYGGFFSEADRAQMELVRSTAPEHLAALEPQFVDPRLPKLFFRYRARNYPNTLS 419
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMY 776
E +RW ++ + + ++N+ + + S +E K+L AL Y
Sbjct: 420 EAEQRRWVQH-CQQSLADADYVHNLEQLFEQHSS-----DEEKMKLLTALGHY 466
>gi|429732538|ref|ZP_19267147.1| exodeoxyribonuclease I [Aggregatibacter actinomycetemcomitans Y4]
gi|429155877|gb|EKX98523.1| exodeoxyribonuclease I [Aggregatibacter actinomycetemcomitans Y4]
Length = 475
Score = 322 bits (825), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 167/433 (38%), Positives = 247/433 (57%), Gaps = 7/433 (1%)
Query: 305 LLHNGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPR 364
++ + +F YDYE+FG+N +DRP QF IRTD N I PI+LYCK D+LP P
Sbjct: 1 MMAKNDFSFFIYDYESFGVNPAKDRPAQFGGIRTDADFNIIGEPIVLYCKQTNDYLPAPE 60
Query: 365 ACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLIN 424
A L+T ITPQ C G+ E +FA+ I + F +P T +G+N I +DDE+TR+ F+RN I+
Sbjct: 61 AVLVTGITPQECNEKGLSEPEFAAKILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFID 120
Query: 425 PYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHD 484
PYE WKN SRWDL+++++A Y L P GI WP + G PSF+LE L+ N ++H AHD
Sbjct: 121 PYEYSWKNGNSRWDLLDLVRACYALRPDGIEWPLDDEGMPSFRLEKLTEANGIAHDNAHD 180
Query: 485 ALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSY 544
A+SDV AT+ +A+LI+ P+LF + R KK V I P +++ M +
Sbjct: 181 AMSDVYATIEMAKLIKQKQPKLFQYFFENRGKKEVEKLIDTAEMTPLVHVSGMLGNYRGN 240
Query: 545 ISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISM 600
+L+ + HP NKN +I +L + L + ++R+ L KK + +P+ +
Sbjct: 241 TTLIASLAWHPTNKNAVIVCDLTANIDDLLTKSVEELRENLYTKKETLLAAGALPVPLKL 300
Query: 601 IHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS 660
IH+N+ PIV +L N R D KN + + IF ++
Sbjct: 301 IHINKCPIVAPAKTLLPQNAE-RLGIDQELCAKNRQRLQEARDIRQKVMDIF--HQEREF 357
Query: 661 DLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIE 720
D N++ +LYN F S D +AILRS+ P+KL+ N F++ ++ EL+F YRAR+F
Sbjct: 358 DASDNVETKLYNGFFSDADKNNMAILRSLEPEKLAKHNLSFQDPRIPELLFHYRARHFYR 417
Query: 721 TLSYKELKRWKKY 733
TL+ E +W+KY
Sbjct: 418 TLNRAEQIKWQKY 430
>gi|432711070|ref|ZP_19946131.1| exodeoxyribonuclease I [Escherichia coli KTE6]
gi|431249123|gb|ELF43294.1| exodeoxyribonuclease I [Escherichia coli KTE6]
Length = 474
Score = 322 bits (825), Expect = 9e-85, Method: Composition-based stats.
Identities = 166/433 (38%), Positives = 249/433 (57%), Gaps = 13/433 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT I
Sbjct: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P+
Sbjct: 189 TIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P V
Sbjct: 249 AWHPENRNAVILVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLELN 665
++ L R + N+K + N + +K+ + SD N
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD---N 361
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 VDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYA 421
Query: 726 ELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 EQQRWLEHRRQVF 434
>gi|52425136|ref|YP_088273.1| exonuclease I [Mannheimia succiniciproducens MBEL55E]
gi|52307188|gb|AAU37688.1| SbcB protein [Mannheimia succiniciproducens MBEL55E]
Length = 472
Score = 322 bits (825), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 164/428 (38%), Positives = 251/428 (58%), Gaps = 9/428 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YD+E+FG+N DRP QFA IRTD N I +P+M YCK D+LP P A ++T I
Sbjct: 5 SFFIYDFESFGVNPADDRPAQFAGIRTDKDFNIISDPVMFYCKQTNDYLPAPEAVMVTGI 64
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C GI E +FA+ I F +P T +G+N I +DDE+TR+ F+RN I+PYE WK
Sbjct: 65 TPQECNEKGISEPEFAARILAEFSQPNTCIMGFNNIRYDDEMTRYTFYRNFIDPYEYSWK 124
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI WP G PSF+LE L+ N + H+ AHDA++DV A
Sbjct: 125 NGNSRWDLLDLVRACYALRPEGINWPLDEEGMPSFRLEKLTKANGIEHENAHDAMADVYA 184
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF F R KK + I P +++ M + + + P+
Sbjct: 185 TIAMAKLIKEKQPKLFQFFFENRGKKEIEKWIDTAEMTPLVHVSGMLGNYRGNCTWIAPL 244
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED----IPISMIHLNRSP 607
HP+N+N +I +L + L ++R+ L +K + D +P+ ++H+N+ P
Sbjct: 245 AWHPINQNAVIACDLAQNIDDLLNKSAVELRENLYTQKTELENDGVLPVPLKLVHINKCP 304
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF-LDYKINNSDLELNI 666
I+ +L N R D N+K L+ ++F + K ++SD N+
Sbjct: 305 IIAPAKTLLPENAQ-RLGIDRQFCLDNLKKLQKSLDIRDKVIEVFNEERKFDDSD---NV 360
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+ ELY+ F SK D + ILR++ P+KL++ FE+K++ +L+F YRAR+F +TL+ E
Sbjct: 361 ETELYSGFFSKADKNNMTILRTLEPEKLADSGLQFEDKRIPDLLFHYRARHFYKTLNRGE 420
Query: 727 LKRWKKYR 734
+W+KYR
Sbjct: 421 QIKWQKYR 428
>gi|293446370|ref|ZP_06662792.1| exodeoxyribonuclease I [Escherichia coli B088]
gi|291323200|gb|EFE62628.1| exodeoxyribonuclease I [Escherichia coli B088]
Length = 475
Score = 322 bits (825), Expect = 1e-84, Method: Composition-based stats.
Identities = 166/434 (38%), Positives = 249/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E + W ++R F
Sbjct: 422 AEQQCWLEHRRQVF 435
>gi|418021273|ref|ZP_12660389.1| Exonuclease I [Candidatus Regiella insecticola R5.15]
gi|347603375|gb|EGY28224.1| Exonuclease I [Candidatus Regiella insecticola R5.15]
Length = 471
Score = 322 bits (825), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 179/472 (37%), Positives = 271/472 (57%), Gaps = 20/472 (4%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STF +DYETFG N DRP QFA +RTD N ID+P+++YC PA D+LP P A LIT
Sbjct: 8 STFYIHDYETFGQNPALDRPVQFAGVRTDHDFNIIDDPLVIYCAPANDYLPQPEAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ+ L +G+ E +F I + F GT ++GYN I FDDE++R +F+RN +PY W
Sbjct: 68 ITPQYALKHGMNEAEFCQKIHQQFSVAGTCTLGYNNIRFDDEVSRNIFYRNFYDPYAYNW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+N SRWDL++V++A Y L P GI WP PSFKLEHL+ N + H KAHDA+SDV
Sbjct: 128 QNGNSRWDLLDVVRACYALRPEGINWP----EIPSFKLEHLAKANGIQHLKAHDAMSDVY 183
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LA+L++ PRLF + R K + A I P +++ MF + S ISL+ P
Sbjct: 184 ATIELAKLVKQAQPRLFKYFYHHRSKHKIKALIDIENMTPLVHVSGMFGVRRSNISLVAP 243
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP NKN +I +L D L D++ +R++L K+ IP+ ++H+N+ P
Sbjct: 244 LAWHPENKNAVIVCDLTADISPLSL-DVSTLREHLYTPKDPLNPQQITIPLKLVHINKCP 302
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL-NI 666
I ++ + R K DL ++ S+ N I +K+ +K + ++ N+
Sbjct: 303 I-LALVNTWREKETKRLKIDLQYCLNQLE---SLRQNPQIKEKVNALFKQMTARPKVNNV 358
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
D +LY F + D + ++ SP+ L +NFCF++ +LE L+F +RARN+ TL E
Sbjct: 359 DAQLYCGFFNDTDRNTIKKIQQTSPQNLPALNFCFQDPRLETLLFRFRARNYHNTLDDAE 418
Query: 727 LKRWKKYRISRFYNKKNNLYNINMFYLEIESLLK--KANEHDTKILNALLMY 776
+RW +YR ++ + + L+++ L + +E + +L +LL Y
Sbjct: 419 QRRWLEYRKEVLSPER-----LKEYILQLDQLCHQYQDDEEKSSLLKSLLNY 465
>gi|238761111|ref|ZP_04622088.1| Exodeoxyribonuclease I [Yersinia kristensenii ATCC 33638]
gi|238761364|ref|ZP_04622340.1| Exodeoxyribonuclease I [Yersinia kristensenii ATCC 33638]
gi|238700338|gb|EEP93079.1| Exodeoxyribonuclease I [Yersinia kristensenii ATCC 33638]
gi|238700591|gb|EEP93331.1| Exodeoxyribonuclease I [Yersinia kristensenii ATCC 33638]
Length = 476
Score = 322 bits (825), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 170/477 (35%), Positives = 263/477 (55%), Gaps = 15/477 (3%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
N + TF +DYETFG DRP QFA +RTD+ N I+ P+++YC PA D+LP P A +
Sbjct: 5 NKSPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQPEAVM 64
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
IT ITPQ L G+ E +FA I + F PGT +GYN I FDDE++R +F+RN +PY
Sbjct: 65 ITGITPQQALAKGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYA 124
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
W+ SRWDL++V++A Y L P GI WP +G PSFKLEHL+ N + H AHDA+S
Sbjct: 125 YSWQGGNSRWDLLDVMRACYALRPEGIVWPENEDGLPSFKLEHLTKANGVEHLHAHDAMS 184
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ +A+L++ PRLF+++ R K + A I P +++ MF + S
Sbjct: 185 DVHATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDISDMTPLVHVSGMFGAARGNTSW 244
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKK---NSFKEDIPISMIHLN 604
+ P+ HP NKN +I +L D L D + +R+ L ++ N+ IP+ ++H+N
Sbjct: 245 VAPLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLNAQDAAIPLKLVHIN 304
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF-LDYKINNSDLE 663
+ P++ +L+ N R D +N++ + N I +K+ L + +
Sbjct: 305 KCPVLAPAKTLLAENAE-RLGIDRQRCLRNLQL---LRQNPQIREKVVALFAEAEPFAVS 360
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
++D +LYN F S D + I+ P+ L ++ F++ +LE L+F +RARN+ TL+
Sbjct: 361 DDVDAQLYNGFFSDADRATMKIILQTDPQNLPALDLTFQDPRLEALLFRFRARNYPNTLT 420
Query: 724 YKELKRWKKYRISRFYNKKNNLY--NINMFYLEIESLLKKANEHDTKILNALLMYGK 778
E +RW +R ++ Y + FY + E ++ +L AL Y +
Sbjct: 421 DSEQQRWLAHRREALNPERVQEYVLQLEQFYNQYE-----GDKEKLALLKALFDYAR 472
>gi|401764359|ref|YP_006579366.1| exonuclease I [Enterobacter cloacae subsp. cloacae ENHKU01]
gi|400175893|gb|AFP70742.1| exonuclease I [Enterobacter cloacae subsp. cloacae ENHKU01]
Length = 474
Score = 322 bits (825), Expect = 1e-84, Method: Composition-based stats.
Identities = 173/472 (36%), Positives = 259/472 (54%), Gaps = 14/472 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A ++T I
Sbjct: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDDEFNIIGEPEVFYCKPADDYLPQPGAVMVTGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+ E +FA I +F P T VGYN I FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQEAREKGVNEAEFARRIHDLFTVPNTCVVGYNNIRFDDEVTRNVFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI WP G SF+LEHL+ N + H AHDA++DV A
Sbjct: 129 NRNSRWDLLDIMRACYALRPEGINWPENEEGLTSFRLEHLTRANGIEHSNAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF ++LS R K+ ++ I P +P +I+ MF + S + P+
Sbjct: 189 TIAMAKLVKAAQPRLFEYLLSHRSKQKLMTLIDVPQMKPLVHISGMFGAWRGNTSWVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R+ L KN + +P+ ++H+N+ P V
Sbjct: 249 AWHPDNRNAVIMVDLAGDISPLLELDSDTLRERLYTPKNELGDLPAVPVKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL-ELNIDE 668
++ L R + N+K + N + +K+ + + N+D
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKV---LRENPQVREKVVAIFAEAEPFVPSENVDA 364
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
+LYN F S D + I+ P+ L ++ F +K++E+L+F YRARN+ TL E +
Sbjct: 365 QLYNGFFSDADRAAMNIVLQTEPRNLPALDITFADKRIEKLMFNYRARNYPGTLDETEQE 424
Query: 729 RWKKYRISRFYNK--KNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGK 778
RW ++R + F + N + M Y + E N +L AL Y +
Sbjct: 425 RWLQHRRNVFTPEYLHNYAQELEMLYGQYE-----GNAEKQALLKALFQYAQ 471
>gi|432372664|ref|ZP_19615709.1| exodeoxyribonuclease I [Escherichia coli KTE11]
gi|430897157|gb|ELC19384.1| exodeoxyribonuclease I [Escherichia coli KTE11]
Length = 475
Score = 322 bits (825), Expect = 1e-84, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 249/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNIIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K + +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDMLRERLYTAKADLGNNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFMPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|415755919|ref|ZP_11480945.1| exodeoxyribonuclease I [Aggregatibacter actinomycetemcomitans
D17P-3]
gi|348655923|gb|EGY71346.1| exodeoxyribonuclease I [Aggregatibacter actinomycetemcomitans
D17P-3]
Length = 474
Score = 322 bits (825), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 167/426 (39%), Positives = 244/426 (57%), Gaps = 7/426 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YDYE+FG+N +DRP QF IRTD N I PI+LYCK D+LP P A L+T I
Sbjct: 7 SFFIYDYESFGVNPAKDRPAQFGGIRTDADFNIIGEPIVLYCKQTNDYLPAPEAVLVTGI 66
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C G+ E +FA+ I + F +P T +G+N I +DDE+TR+ F+RN I+PYE WK
Sbjct: 67 TPQECNEKGLSEPEFAAKILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWK 126
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI WP + G PSF+LE L+ N ++H AHDA+SDV A
Sbjct: 127 NGNSRWDLLDLVRACYALRPDGIEWPLDDEGMPSFRLEKLTEANGIAHDNAHDAMSDVYA 186
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF + R KK V I P +++ M + +L+ +
Sbjct: 187 TIEMAKLIKQKQPKLFQYFFENRGKKEVEKLIDTAEMTPLVHVSGMLGNYRGNTTLIASL 246
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLNRSP 607
HP NKN +I +L + L + ++R+ L KK + +P+ +IH+N+ P
Sbjct: 247 AWHPTNKNAVIVCDLTANIDDLLTKSVEELRENLYTKKETLLAAGALPVPLKLIHINKCP 306
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
IV +L N R D KN + + IF ++ D N++
Sbjct: 307 IVAPAKTLLPQNAE-RLGIDQELCAKNRQRLQEARDIRQKVMNIF--HQEREFDASDNVE 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LYN F S D +AILRS+ P+KL+ N F++ ++ EL+F YRAR+F TL+ E
Sbjct: 364 TKLYNGFFSDADKNNMAILRSLEPEKLAKHNLSFQDPRIPELLFHYRARHFYRTLNRAEQ 423
Query: 728 KRWKKY 733
+W+KY
Sbjct: 424 IKWQKY 429
>gi|398799020|ref|ZP_10558314.1| exonuclease I [Pantoea sp. GM01]
gi|398099303|gb|EJL89567.1| exonuclease I [Pantoea sp. GM01]
Length = 473
Score = 322 bits (824), Expect = 1e-84, Method: Composition-based stats.
Identities = 174/475 (36%), Positives = 264/475 (55%), Gaps = 20/475 (4%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFA +RTD N + P + YC+PA D+LP P A +IT I
Sbjct: 7 TFLFHDYETFGKSPSLDRPAQFAGLRTDKEFNAVGEPQVFYCQPADDYLPQPEAVMITGI 66
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+ E FA I +F +P T +GYN + FDDE+TR +F+RN +PY W+
Sbjct: 67 TPQTAKARGVTEAAFAERIHGLFSEPQTCVIGYNNVRFDDEVTRNIFYRNFFDPYGWSWQ 126
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++A Y L P GI WP ++G PSFKLEHL+ N+++H++AHDA+SDV A
Sbjct: 127 NGNSRWDLLDVMRACYALRPEGIVWPENDDGFPSFKLEHLTKANSVAHEQAHDAMSDVYA 186
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
TL +A+L++ P+LF F+ + R K+ ++ I P +P +++ MF + S + P+
Sbjct: 187 TLAMAKLVKEKQPKLFEFLFTHRNKQKLMTLIDIPQMKPLVHVSGMFGAARGNTSWIVPL 246
Query: 552 CIHPMNKNILITWNLLHD--PKKFLLNDINKIRDYLCFKKNSFKEDIPISMIHLNRSPIV 609
HP N+N LI +L D P L ++ + R Y +PI ++H+N+ P V
Sbjct: 247 AWHPDNRNALIVADLAGDMSPLLELESEELRERLYTRHSDLGDLAAVPIKLVHINKCP-V 305
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLELN 665
++ L R D N+K + + + +K+ + +D +
Sbjct: 306 LAPASTLRPEDAARLGIDRQRCLANLKV---LREHAEVREKVVALFAEAEPFKPTD---D 359
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LY+ F S D + ILR P+ L ++ FE+K++ +L+F YRARNF TL
Sbjct: 360 VDAQLYDGFFSDADRAGMNILRQTPPQNLPALDLTFEDKRIGKLLFRYRARNFPGTLDDA 419
Query: 726 ELKRWKKYRISRFYNKKNNLYNINMFYLEIESL--LKKANEHDTKILNALLMYGK 778
E +RW ++R N + F E+ESL L + N L AL +Y +
Sbjct: 420 EQQRWLQHRREVL-----NADRVQAFLQELESLASLHEDNSEKMAQLKALYLYAQ 469
>gi|410616923|ref|ZP_11327907.1| exodeoxyribonuclease I [Glaciecola polaris LMG 21857]
gi|410163546|dbj|GAC32045.1| exodeoxyribonuclease I [Glaciecola polaris LMG 21857]
Length = 476
Score = 322 bits (824), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 180/477 (37%), Positives = 274/477 (57%), Gaps = 11/477 (2%)
Query: 309 GNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLI 368
+ + W+DYET+G+N ++D QFA IRTD+ LN I P+M++ + D+LP+P+ACLI
Sbjct: 2 SSPSIFWHDYETWGVNPQKDPACQFAGIRTDLDLNIISKPLMIFNQIPNDYLPNPQACLI 61
Query: 369 TKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYER 428
T ITPQ L +G+ E +F + I F +P T GYN I FDDE+TR+ +RN +PY R
Sbjct: 62 TGITPQRSLRDGMIEPEFIAKIHHEFSQPNTCVAGYNNIRFDDEVTRYALYRNFYDPYAR 121
Query: 429 EWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSD 488
EW+N SRWD+I+V++A Y L P GI WP K +G PSFKLE LS NN+ H AHDA+SD
Sbjct: 122 EWRNGNSRWDIIDVVRACYALRPDGIEWPLKEDGSPSFKLEDLSQANNIEHSAAHDAMSD 181
Query: 489 VRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLM 548
V AT+GLA+L++ P+L++++ +LR KK V+A P +I+ + H + +
Sbjct: 182 VYATIGLAKLVKTVQPKLYDYLFNLRLKKNVIALFDLNNHTPLVHISSKLPALHGCCTWI 241
Query: 549 WPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNR 605
PI HP+NKN I NL D + L +++I L N +E +PI +IH+N+
Sbjct: 242 APIAQHPINKNAYIVVNLALDIRPLLSLTVDEIIAKLYTPSNMLEEGEQRLPIKLIHVNK 301
Query: 606 SPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELN 665
SP V++ K LS + R + +N++ + + + +K+ + N E
Sbjct: 302 SP-VLAPAKSLSEDNAERLGINRATCLQNLQL---LKQHPELVEKLITVHSENKPKAEHE 357
Query: 666 IDEELYNN-FISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
D LY+ F S +D + + SP +L+++ FE+ +L+ L+F Y+ARNF TL+
Sbjct: 358 ADHALYSGAFFSPRDRDLMNQVIGCSPAQLADLTLPFEDPRLDTLLFYYKARNFPTTLNE 417
Query: 725 KELKRWKKYRISRFYNK---KNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGK 778
EL+RW+ +R R ++ N + M LE+ S + N IL AL Y +
Sbjct: 418 LELQRWQNHRKFRLLDEGSPSNITMSDYMQSLELLSQEHQTNNDKLAILKALYRYAE 474
>gi|218554573|ref|YP_002387486.1| exonuclease I [Escherichia coli IAI1]
gi|218361341|emb|CAQ98929.1| exonuclease I [Escherichia coli IAI1]
Length = 475
Score = 322 bits (824), Expect = 1e-84, Method: Composition-based stats.
Identities = 166/434 (38%), Positives = 249/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKP D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPVDDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|238793487|ref|ZP_04637112.1| Exodeoxyribonuclease I [Yersinia intermedia ATCC 29909]
gi|238727260|gb|EEQ18789.1| Exodeoxyribonuclease I [Yersinia intermedia ATCC 29909]
Length = 476
Score = 322 bits (824), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 168/477 (35%), Positives = 261/477 (54%), Gaps = 15/477 (3%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
N TF +DYETFG DRP QFA +RTD+ N I+ P+++YC PA D+LP P A +
Sbjct: 5 NKQPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVIYCAPADDYLPQPEAVM 64
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
IT ITPQ L NG+ E +F+ I + F PGT +GYN I FDDE++R +F+RN +PY
Sbjct: 65 ITGITPQHALANGVNEAEFSRQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYA 124
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
W+ SRWDL++V++A Y L P GI WP +G PSFKLEHL+ N + H AHDA+S
Sbjct: 125 YSWQGGNSRWDLLDVMRACYALRPEGIVWPENEDGLPSFKLEHLTKANGVEHLHAHDAMS 184
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ +A+L++ PRLF+++ R K + A I P +++ MF + S
Sbjct: 185 DVHATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSW 244
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKK---NSFKEDIPISMIHLN 604
+ P+ HP NKN +I +L D L D + +R+ L ++ N+ +P+ ++H+N
Sbjct: 245 VAPLAWHPENKNAVIMCDLAGDMSPLLALDSDTLRERLYTRRDKLNTQDAAVPLKLVHIN 304
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF-LDYKINNSDLE 663
+ P++ +L N R D +N++ + N + +K+ L + +
Sbjct: 305 KCPVLAPAKTLLPENAE-RLGIDRQRCLQNLQL---LRQNPQVREKVVALFAEAEPFAVS 360
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
++D +LYN F S D + I+ P+ L ++ F++ +LE L F +RARN+ TL+
Sbjct: 361 DDVDAQLYNGFFSDADRATMKIILQTEPQNLPALDLTFQDPRLETLFFRFRARNYPNTLT 420
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK--ILNALLMYGK 778
E +RW +R N + + L++E + + K +L AL Y +
Sbjct: 421 DSEQQRWLAHRREAL-----NPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAR 472
>gi|421682956|ref|ZP_16122758.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Shigella flexneri 1485-80]
gi|404339300|gb|EJZ65732.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Shigella flexneri 1485-80]
Length = 474
Score = 322 bits (824), Expect = 1e-84, Method: Composition-based stats.
Identities = 165/433 (38%), Positives = 248/433 (57%), Gaps = 13/433 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT I
Sbjct: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF+++ + R K ++A I P P +++ MF + S + P+
Sbjct: 189 TIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMTPLVHVSGMFGAWRGNTSWVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P V
Sbjct: 249 AWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLELN 665
++ L R + N+K + N + +K+ + +D N
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPTD---N 361
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 VDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYA 421
Query: 726 ELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 EQQRWLEHRRQVF 434
>gi|238795750|ref|ZP_04639264.1| Exodeoxyribonuclease I [Yersinia mollaretii ATCC 43969]
gi|238720476|gb|EEQ12278.1| Exodeoxyribonuclease I [Yersinia mollaretii ATCC 43969]
Length = 476
Score = 322 bits (824), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 170/477 (35%), Positives = 261/477 (54%), Gaps = 15/477 (3%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
N TF +DYETFG DRP QFA +RTD+ N I+ P+++YC PA D+LP P A +
Sbjct: 5 NKQPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVIYCAPADDYLPQPEAVM 64
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
IT ITPQ L NG+ E +FA I + F PGT +GYN I FDDE++R +F+RN +PY
Sbjct: 65 ITGITPQHALANGVNEAEFARQINQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYA 124
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
W+ SRWDL++V++A Y L P GI WP +G PSFKLEHL+ N + H AHDA+S
Sbjct: 125 YSWQGGNSRWDLLDVMRACYALRPEGIIWPENEDGLPSFKLEHLTKANGVEHLHAHDAMS 184
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ +A+L++ PRLF+++ R K + A I P +++ MF + S
Sbjct: 185 DVHATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSW 244
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
+ P+ HP NKN +I +L D L D + +R+ L +++ IP+ ++H+N
Sbjct: 245 VAPLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLSAQDAAIPLKLVHIN 304
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF-LDYKINNSDLE 663
+ P++ +L N R D +N++ + N + +K+ L + +
Sbjct: 305 KCPVLAPAKTLLPENAE-RLGIDRQRCLQNLQL---LRQNPQVREKVVALFAEAEPFAVS 360
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
++D +LYN F S D + I+ + L ++ F++ +LE L+F +RARN+ TL+
Sbjct: 361 DDVDAQLYNGFFSDADRATMKIILQTEAQNLPALDLTFQDPRLEPLLFRFRARNYPNTLT 420
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK--ILNALLMYGK 778
E KRW ++R N + + L++E + + K +L AL Y K
Sbjct: 421 DSEQKRWLEHRREAL-----NPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAK 472
>gi|432466131|ref|ZP_19708220.1| exodeoxyribonuclease I [Escherichia coli KTE205]
gi|433073230|ref|ZP_20259885.1| exodeoxyribonuclease I [Escherichia coli KTE129]
gi|433120618|ref|ZP_20306293.1| exodeoxyribonuclease I [Escherichia coli KTE157]
gi|433183680|ref|ZP_20367935.1| exodeoxyribonuclease I [Escherichia coli KTE85]
gi|430993715|gb|ELD10059.1| exodeoxyribonuclease I [Escherichia coli KTE205]
gi|431587941|gb|ELI59289.1| exodeoxyribonuclease I [Escherichia coli KTE129]
gi|431643176|gb|ELJ10879.1| exodeoxyribonuclease I [Escherichia coli KTE157]
gi|431706862|gb|ELJ71426.1| exodeoxyribonuclease I [Escherichia coli KTE85]
Length = 475
Score = 322 bits (824), Expect = 1e-84, Method: Composition-based stats.
Identities = 164/431 (38%), Positives = 249/431 (57%), Gaps = 7/431 (1%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + + + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTTWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDLELNID 667
V++ L R + N+K + N + +K+ + + N+D
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSENVD 364
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y E
Sbjct: 365 AQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQ 424
Query: 728 KRWKKYRISRF 738
+RW ++R F
Sbjct: 425 QRWLEHRRQVF 435
>gi|293415305|ref|ZP_06657948.1| exodeoxyribonuclease I [Escherichia coli B185]
gi|291432953|gb|EFF05932.1| exodeoxyribonuclease I [Escherichia coli B185]
Length = 475
Score = 322 bits (824), Expect = 1e-84, Method: Composition-based stats.
Identities = 166/434 (38%), Positives = 249/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DR QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRSAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|257464641|ref|ZP_05629012.1| exonuclease I [Actinobacillus minor 202]
gi|257450301|gb|EEV24344.1| exonuclease I [Actinobacillus minor 202]
Length = 514
Score = 322 bits (824), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 172/472 (36%), Positives = 261/472 (55%), Gaps = 17/472 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF +YDYE+FG+N DRP QFA IRTD N I P+M YCK D+LP P A ++T I
Sbjct: 6 TFFFYDYESFGVNPAIDRPAQFAGIRTDEQFNIIGEPVMFYCKQTSDYLPSPEAVMVTGI 65
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
PQ C G+ E +FA+ I F +P T +GYN I +DDE+TR+ F+RN +PYE WK
Sbjct: 66 LPQQCNAEGLSEPEFAARIHAEFSQPNTCVIGYNNIRYDDEMTRYTFFRNFFDPYEYSWK 125
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++A Y L P GI W G P+FKLE+L+ N +SH+ AHDA+SDV A
Sbjct: 126 NGNSRWDLLDVVRACYALRPEGIEWVTDEEGIPNFKLENLTKANGISHENAHDAMSDVYA 185
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF F R KK + I P +++ M + + + P+
Sbjct: 186 TIAMAKLIKEKQPKLFQFFFEHRGKKEIEKLIDTAEMTPLVHVSGMLGNYRGNTAWVVPL 245
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L D + L +++ L K+ E +P+ ++H+N+ PI
Sbjct: 246 AWHPTNQNAVIVCDLSGDIQGLLNESSEVLKNRLYTKRTELSEQEKPVPLKLVHINKCPI 305
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKC--ASSILNNTYIWKKIFLDYKINNSDLELNI 666
++ KVL R D +N+K A L + + D SD N+
Sbjct: 306 -LAPAKVLLPENAARLGIDREQCLENLKALKAQKSLVREKVIEIFTEDRTFAPSD---NV 361
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+ LY+ F S+ D ++ILRS++P++L++ F + ++E+L+F YRAR++ ETL+ E
Sbjct: 362 ETSLYDGFFSQADKNNMSILRSLAPEELAHHGLQFADPRVEKLLFHYRARHYPETLTRAE 421
Query: 727 LKRWKKYRISRFYNKKNNLYNINMFYLEIESLLK--KANEHDTKILNALLMY 776
+W+KY + ++ F IE+L + +E K+L L Y
Sbjct: 422 QIKWQKYCHQQLDSRAEQ------FAQSIETLFQIHHDDEEKVKLLEELTAY 467
>gi|197335521|ref|YP_002156294.1| exonuclease I [Vibrio fischeri MJ11]
gi|197317011|gb|ACH66458.1| exodeoxyribonuclease I [Vibrio fischeri MJ11]
Length = 474
Score = 322 bits (824), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 172/476 (36%), Positives = 264/476 (55%), Gaps = 12/476 (2%)
Query: 305 LLHNGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPR 364
+ N +F ++DYET+G + DRP QFA +RTD N I P+++YC+P D+LP P
Sbjct: 1 MQQNNAPSFFFFDYETWGTSPSLDRPCQFAGVRTDEDFNIIGEPLVIYCRPPVDYLPSPE 60
Query: 365 ACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLIN 424
ACLIT ITPQ +N G+ E +F + I +P T S+GYN I FDDE++R+ +RN
Sbjct: 61 ACLITGITPQTAVNKGLSEPEFIAKIHHELSQPNTCSLGYNNIRFDDEVSRYTLYRNFFE 120
Query: 425 PYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHD 484
PY W+N SRWDL++V++A Y L P GI WP G+PSFKLE+LS N + H AHD
Sbjct: 121 PYGWSWQNGNSRWDLLDVMRAVYALRPEGINWPKDEEGRPSFKLENLSVANGIEHANAHD 180
Query: 485 ALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSY 544
A++DV AT+ LA+ ++ P++FN++LS+R KK I P +++ MF
Sbjct: 181 AMADVIATIELAKKVKEAQPKMFNYLLSMRNKKKAATLIDIVEMTPLMHVSGMFGVDRGN 240
Query: 545 ISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMI 601
IS + P+ HP N N +IT +L DP FL ++ ++ + K++ D +P+ ++
Sbjct: 241 ISWIVPVAWHPTNNNAVITIDLALDPSVFLKLNVEELHQRMYTKRSDLGPDELPVPVKLV 300
Query: 602 HLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKIN-NS 660
HLN+ P V++ K L++ D +N+K I N I +K+ Y I N
Sbjct: 301 HLNKCP-VLAPAKTLTAENAANLNVDREACLRNLKV---IRENPEIRQKLIELYSIEPNY 356
Query: 661 DLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIE 720
+ N+D LY+ F S D + I+R +P++L + + +++ L+F YRARNF
Sbjct: 357 EKSTNVDTLLYDGFFSHADKATIDIIRQSTPEQLIDFEPNVTDPRIKPLLFRYRARNFPH 416
Query: 721 TLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMY 776
TL+ E RW + + ++ Y + L +ES + N+ IL A+ Y
Sbjct: 417 TLNEAEQLRWHAH-LQDYFQTHLPDYEASFENLYLES---EGNDKKVAILKAVYNY 468
>gi|432441507|ref|ZP_19683847.1| exodeoxyribonuclease I [Escherichia coli KTE189]
gi|433014274|ref|ZP_20202623.1| exodeoxyribonuclease I [Escherichia coli KTE104]
gi|430965961|gb|ELC83369.1| exodeoxyribonuclease I [Escherichia coli KTE189]
gi|431530783|gb|ELI07460.1| exodeoxyribonuclease I [Escherichia coli KTE104]
Length = 474
Score = 322 bits (824), Expect = 1e-84, Method: Composition-based stats.
Identities = 163/426 (38%), Positives = 247/426 (57%), Gaps = 7/426 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT I
Sbjct: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P+
Sbjct: 189 TIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P V
Sbjct: 249 AWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDLELNIDE 668
++ L R + N+K + N + +K+ + + N+D
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSHNVDA 364
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
+LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y E +
Sbjct: 365 QLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQ 424
Query: 729 RWKKYR 734
RW ++R
Sbjct: 425 RWLEHR 430
>gi|419278463|ref|ZP_13820712.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC10E]
gi|419345676|ref|ZP_13887051.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC13A]
gi|419350082|ref|ZP_13891423.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC13B]
gi|419355498|ref|ZP_13896756.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC13C]
gi|419360590|ref|ZP_13901809.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC13D]
gi|419365690|ref|ZP_13906852.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC13E]
gi|419375911|ref|ZP_13916937.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC14B]
gi|419381242|ref|ZP_13922196.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC14C]
gi|419386498|ref|ZP_13927377.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC14D]
gi|378128679|gb|EHW90060.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC10E]
gi|378186789|gb|EHX47410.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC13A]
gi|378200828|gb|EHX61281.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC13C]
gi|378201232|gb|EHX61680.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC13B]
gi|378203731|gb|EHX64151.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC13D]
gi|378212925|gb|EHX73244.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC13E]
gi|378220294|gb|EHX80556.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC14B]
gi|378228313|gb|EHX88472.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC14C]
gi|378231717|gb|EHX91825.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC14D]
Length = 474
Score = 322 bits (824), Expect = 1e-84, Method: Composition-based stats.
Identities = 166/434 (38%), Positives = 249/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP A LIT
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQSGAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDIPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 361 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 420
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 421 AEQQRWLEHRRQVF 434
>gi|419013877|ref|ZP_13561231.1| exodeoxyribonuclease I [Escherichia coli DEC1D]
gi|377858185|gb|EHU23029.1| exodeoxyribonuclease I [Escherichia coli DEC1D]
Length = 475
Score = 322 bits (824), Expect = 1e-84, Method: Composition-based stats.
Identities = 165/431 (38%), Positives = 248/431 (57%), Gaps = 7/431 (1%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMNPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDLELNID 667
V++ L R + N+K + N + +K+ + + N+D
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSENVD 364
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y E
Sbjct: 365 AQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQ 424
Query: 728 KRWKKYRISRF 738
+RW ++R F
Sbjct: 425 QRWLEHRRQVF 435
>gi|365971229|ref|YP_004952790.1| exodeoxyribonuclease I [Enterobacter cloacae EcWSU1]
gi|365750142|gb|AEW74369.1| Exodeoxyribonuclease I [Enterobacter cloacae EcWSU1]
Length = 478
Score = 322 bits (824), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 173/478 (36%), Positives = 261/478 (54%), Gaps = 20/478 (4%)
Query: 309 GNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLI 368
TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A ++
Sbjct: 10 ARPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNIIGEPEVFYCKPADDYLPQPGAVMV 69
Query: 369 TKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYER 428
T ITPQ + G+ E FA I +F P T VGYN I FDDE+TR +F+RN +PY
Sbjct: 70 TGITPQEARDKGVNEAAFARRIHDLFTVPNTCVVGYNNIRFDDEVTRNIFYRNFYDPYAW 129
Query: 429 EWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSD 488
W+N SRWDL+++++A Y L P GI WP + G PSF+LEHL+ N + H AHDA++D
Sbjct: 130 SWQNRNSRWDLLDIMRACYALRPEGINWPENDEGLPSFRLEHLTRANGIEHSNAHDAMAD 189
Query: 489 VRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLM 548
V AT+ +A+L++ PRLF+++LS R K+ + I P +P +I+ MF + S +
Sbjct: 190 VYATIAMAKLVKTAQPRLFDYLLSHRSKQKLTTLIDVPQMKPLVHISGMFGAWRGNTSWV 249
Query: 549 WPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRS 606
P+ HP N+N +I +L D L D + +R+ L K+ + +P+ ++H+N+
Sbjct: 250 APLAWHPDNRNAVIMVDLAGDITPLLDLDSDTLRERLYTPKDELGDLPAVPVKLVHINKC 309
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINN----SDL 662
P V++ L + R + N+K + N + +K+ + SD
Sbjct: 310 P-VLAQANTLRAEDADRLGINRQRCLDNLKV---LRENPQVREKVVAIFAEAEPFVPSD- 364
Query: 663 ELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
N+D +LYN F S D + I+ P+ L ++ F + ++E+L+F YRARN+ TL
Sbjct: 365 --NVDAQLYNGFFSDADRAAMNIVLQTEPRNLPALDITFADARIEKLMFNYRARNYPGTL 422
Query: 723 SYKELKRWKKYRISRFYNK--KNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGK 778
E RW ++R F + ++ + M Y + E N +L AL Y +
Sbjct: 423 DETEQARWLQHRRHVFTPEFLQSYAQELEMLYSQYE-----GNAEKQALLKALYQYAQ 475
>gi|117619062|ref|YP_856430.1| exodeoxyribonuclease I [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
gi|117560469|gb|ABK37417.1| exodeoxyribonuclease I [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 564
Score = 322 bits (824), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 177/501 (35%), Positives = 274/501 (54%), Gaps = 19/501 (3%)
Query: 279 GLKIEKNKIKLPNNSIKKIGNYYIDILLHNGNS-TFLWYDYETFGLNVRRDRPFQFAAIR 337
G + +++I L +N K H G+ TF ++DYETFG++ +DRP QFA IR
Sbjct: 76 GARRHRHRISLSSNMSKTA---------HAGSEPTFYFHDYETFGISPAKDRPAQFAGIR 126
Query: 338 TDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKITPQFCLNNGIPEYKFASIIEKIFLKP 397
TD N I P+++YCKP D+LP+P ACLIT ITPQ + +G+ E F I + F P
Sbjct: 127 TDGDFNLIGEPLVIYCKPPADYLPEPEACLITGITPQKAMKDGLCEADFIRQIHEQFATP 186
Query: 398 GTISVGYNTILFDDEITRFMFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWP 457
GT +GYN+I FDDE+TR+ +RN +PY W+N SRWD++++++A Y L P GI W
Sbjct: 187 GTCVLGYNSIRFDDEVTRYTLYRNFYDPYAYAWQNGNSRWDILDMLRACYALRPEGIEWA 246
Query: 458 YKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKK 517
+ GKPSFKLE L+ N ++H AHDALSDV AT+ +A+L++ P+LF ++ LR K
Sbjct: 247 FDEEGKPSFKLEKLTVANGVAHANAHDALSDVLATIEMAKLVKKAQPKLFGYLFDLRNKN 306
Query: 518 YVLAEIGWPIARPFFYITHMFSSKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLND 577
V A I +P +++ MFS S + P+ HP N+N +I +L DP +
Sbjct: 307 KVKALIDVVTMKPLVHVSGMFSPWQGCASWVSPLAWHPSNQNAVIMVDLTRDPTPLIELT 366
Query: 578 INKIRDYLCFKKNSFKE--DIPISMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNI 635
+IR+ L KK + IP+ ++H+N+ P V++ L++ + D K++
Sbjct: 367 SEEIRERLYTKKEELGDLAGIPVKLVHINKCP-VLAPAATLTAERADQLGIDREQCRKSL 425
Query: 636 KCASSILNNTYIWKKIFLDYKINNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLS 695
+ ++F N+D + D +LY F D + ++R+ L
Sbjct: 426 DLLRAHPEVREKLVEVFNQEFAGNND--GDPDTQLYAGFFGHGDKSTMDLVRATPADLLG 483
Query: 696 NVNFCFENKKLEELIFLYRARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEI 755
F F + +L E++F YRARN+ TLS E KRW+ + S +++++ Y + LE
Sbjct: 484 EREFAFTDSRLPEMLFRYRARNWPHTLSEAEQKRWRLH-CSDYFSRRLPDY---VPRLEE 539
Query: 756 ESLLKKANEHDTKILNALLMY 776
+ + NE + IL +L Y
Sbjct: 540 LAEQNQGNERNFAILKSLYHY 560
>gi|410641208|ref|ZP_11351731.1| exodeoxyribonuclease I [Glaciecola chathamensis S18K6]
gi|410646436|ref|ZP_11356887.1| exodeoxyribonuclease I [Glaciecola agarilytica NO2]
gi|410134042|dbj|GAC05286.1| exodeoxyribonuclease I [Glaciecola agarilytica NO2]
gi|410139335|dbj|GAC09918.1| exodeoxyribonuclease I [Glaciecola chathamensis S18K6]
Length = 476
Score = 322 bits (824), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 174/474 (36%), Positives = 270/474 (56%), Gaps = 11/474 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+ W+DYET+G+N ++D QFA IRTD+ LN I P+M++ + D+LP P+ACLIT I
Sbjct: 5 SIYWHDYETWGVNPQKDPACQFAGIRTDLDLNIISQPLMIFNQIPNDYLPHPQACLITGI 64
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L +G+ E +F I F + T GYN I FDDE+TR+ +RN +PYEREW+
Sbjct: 65 TPQHSLRDGMIEPEFIEKIHHEFSQAETCVAGYNNIRFDDEVTRYTLYRNFYDPYEREWR 124
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD+I+V++A Y L P GI WP K +G PSFKLE LS NN+ H AHDA+SDV A
Sbjct: 125 NGNSRWDIIDVVRACYALRPDGIEWPLKEDGSPSFKLEDLSKANNIEHSAAHDAMSDVHA 184
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+G+A+L++ P+L++++ +LR KK V+A I P +I+ + + + + PI
Sbjct: 185 TIGVAKLVKTAQPKLYDYLFNLRLKKNVIALIDTQAHTPLVHISSKLPAINGCCTWVAPI 244
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN I NL D + L + +I L N E +PI ++H+N+SP
Sbjct: 245 AQHPTNKNAFIMLNLSLDIQPLLDLSVEEIIQKLYTPSNMLDEGEQRLPIKLVHVNKSP- 303
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
V++ K L+ R D +N++ + + + +K+ + N + D
Sbjct: 304 VLAPAKTLNEENAARLGIDRQACLQNLQL---LKQHPELVEKLIKVHHSNTEHVPQEADH 360
Query: 669 ELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY+ F S KD + +R +P++L+++ FE+ +L+ L+F Y+ARNF +L+ +E+
Sbjct: 361 SLYSGGFFSPKDRALMDQVRQSTPEQLADLALPFEDSRLDNLLFYYKARNFPTSLNDQEM 420
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLKK---ANEHDTKILNALLMYGK 778
+RW+ +R R + + Y++ LL + +N IL AL Y +
Sbjct: 421 QRWQNHRKFRLLDDSSPSSITMSDYVQTLELLCEQYHSNSDKLAILKALYTYAE 474
>gi|410627683|ref|ZP_11338420.1| exodeoxyribonuclease I [Glaciecola mesophila KMM 241]
gi|410152757|dbj|GAC25189.1| exodeoxyribonuclease I [Glaciecola mesophila KMM 241]
Length = 476
Score = 321 bits (823), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 175/477 (36%), Positives = 266/477 (55%), Gaps = 11/477 (2%)
Query: 309 GNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLI 368
+ W+DYET+G+N ++D QFA IRTD+ LN I P+M++ + D+LP P ACLI
Sbjct: 2 STPSIYWHDYETWGVNPQKDPACQFAGIRTDLDLNIITQPLMIFNQIPNDYLPHPEACLI 61
Query: 369 TKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYER 428
T ITPQ L +G+ E F I K F P T GYN I FDDE+TR+ +RN +PY R
Sbjct: 62 TGITPQHSLRDGMIEPDFIQKIHKEFSTPETCVAGYNNIRFDDEVTRYTLYRNFYDPYGR 121
Query: 429 EWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSD 488
EW+N SRWD+I+V++A Y L P GI WP K +G PSFKLE LS NN+ H AHDA+SD
Sbjct: 122 EWRNGNSRWDIIDVVRACYALRPEGIEWPLKGDGTPSFKLEDLSKANNIEHAAAHDAMSD 181
Query: 489 VRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLM 548
V AT+ +A+L++ P+L++++ +LR KK V+A + P +I+ + + + +
Sbjct: 182 VHATIAMAKLVKTAQPKLYDYLFNLRFKKNVIALLDITAHTPLVHISSKLPALNGCCTWI 241
Query: 549 WPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNR 605
P+ HP NKN I NL D + + + +I L N +E +PI +IH+N+
Sbjct: 242 APVAQHPTNKNAFIVVNLALDIQPLIDLSVEEIIHKLYTPSNMLEEGEQRLPIKLIHINK 301
Query: 606 SPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELN 665
SP VI+ K L R D +N+K + + + K+ + + +E +
Sbjct: 302 SP-VIAPAKTLDEANAVRLGIDREACLRNLKV---LKQHPELVDKLIAVHSTSREKIEQD 357
Query: 666 IDEELYNN-FISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
D LY+ F S KD + + SP++L ++ FE+ +L+ L+F Y+ARNF +L+
Sbjct: 358 ADHALYSGAFFSPKDRALMDQVLQSSPEQLVDLTLPFEDPRLDNLLFYYKARNFPTSLNE 417
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLK---KANEHDTKILNALLMYGK 778
+EL+RW+ +R R + + Y++ LL ++N IL AL Y +
Sbjct: 418 QELQRWQNHRKFRLLDDTSPSSITMTDYVQTLELLSEQYQSNNDKLAILKALYTYAE 474
>gi|59712089|ref|YP_204865.1| exonuclease I [Vibrio fischeri ES114]
gi|59480190|gb|AAW85977.1| exonuclease I [Vibrio fischeri ES114]
Length = 474
Score = 321 bits (823), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 172/476 (36%), Positives = 264/476 (55%), Gaps = 12/476 (2%)
Query: 305 LLHNGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPR 364
+ N +F ++DYET+G + DRP QFA +RTD N I P+++YC+P D+LP P
Sbjct: 1 MPQNNAPSFFFFDYETWGTSPSLDRPCQFAGVRTDEDFNIIGEPLVIYCRPPVDYLPSPE 60
Query: 365 ACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLIN 424
ACLIT ITPQ +N G+ E +F + I +P T S+GYN I FDDE++R+ +RN
Sbjct: 61 ACLITGITPQTAVNKGLSEPEFIAKIHHELSQPNTCSLGYNNIRFDDEVSRYTLYRNFFE 120
Query: 425 PYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHD 484
PY W+N SRWDL++V++A Y L P GI WP G+PSFKLE+LS N + H AHD
Sbjct: 121 PYGWSWQNGNSRWDLLDVMRAVYALRPEGINWPKDEEGRPSFKLENLSVANGIEHANAHD 180
Query: 485 ALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSY 544
A++DV AT+ LA+ ++ P++FN++LS+R KK I P +++ MF
Sbjct: 181 AMADVIATIELAKKVKQAQPKMFNYLLSMRNKKKAATLIDIVEMTPLMHVSGMFGVDRGN 240
Query: 545 ISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMI 601
IS + P+ HP N N +IT +L DP FL ++ ++ + K++ D +P+ ++
Sbjct: 241 ISWIVPVAWHPTNNNAVITIDLALDPSVFLELNVEELHQRMYTKRSELGPDELPVPVKLV 300
Query: 602 HLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKIN-NS 660
HLN+ P V++ K L++ D +N+K I N I +K+ Y I N
Sbjct: 301 HLNKCP-VLAPAKTLTAENAANLNVDREACLRNLKV---IRENPEIRQKLIELYSIEPNY 356
Query: 661 DLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIE 720
+ N+D LY+ F S D + I+R +P++L + + +++ L+F YRARNF
Sbjct: 357 EKSTNVDTLLYDGFFSHADKATIDIIRQSTPEQLIDFEPNVTDPRIKPLLFRYRARNFPH 416
Query: 721 TLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMY 776
TL+ E RW + + ++ Y + L +ES + N+ IL A+ Y
Sbjct: 417 TLNEAEQLRWHAH-LQDYFQTHLPDYEASFENLYLES---EGNDKKVAILKAVYNY 468
>gi|82543387|ref|YP_407334.1| exonuclease I [Shigella boydii Sb227]
gi|416297048|ref|ZP_11651553.1| Exodeoxyribonuclease I [Shigella flexneri CDC 796-83]
gi|417681157|ref|ZP_12330535.1| exodeoxyribonuclease I [Shigella boydii 3594-74]
gi|420353388|ref|ZP_14854505.1| exodeoxyribonuclease I [Shigella boydii 4444-74]
gi|81244798|gb|ABB65506.1| deoxyribophosphodiesterase [Shigella boydii Sb227]
gi|320185776|gb|EFW60530.1| Exodeoxyribonuclease I [Shigella flexneri CDC 796-83]
gi|332097090|gb|EGJ02073.1| exodeoxyribonuclease I [Shigella boydii 3594-74]
gi|391278877|gb|EIQ37573.1| exodeoxyribonuclease I [Shigella boydii 4444-74]
Length = 474
Score = 321 bits (823), Expect = 2e-84, Method: Composition-based stats.
Identities = 165/433 (38%), Positives = 248/433 (57%), Gaps = 13/433 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT I
Sbjct: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF+++ + R K ++A I P P +++ MF + S + P+
Sbjct: 189 TIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMPPLVHVSGMFGAWRGNTSWVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P V
Sbjct: 249 AWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLELN 665
++ L R + N+K + N + +K+ + +D N
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPTD---N 361
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 VDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYA 421
Query: 726 ELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 EQQRWLEHRRQVF 434
>gi|422009063|ref|ZP_16356046.1| exonuclease I [Providencia rettgeri Dmel1]
gi|414092881|gb|EKT54553.1| exonuclease I [Providencia rettgeri Dmel1]
Length = 475
Score = 321 bits (823), Expect = 2e-84, Method: Composition-based stats.
Identities = 177/475 (37%), Positives = 266/475 (56%), Gaps = 20/475 (4%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF +DYETFG DRP QFA +RTD+ N I+ P + YC PA D+LP P A +IT I
Sbjct: 9 TFFIHDYETFGKRPALDRPAQFAGVRTDLDFNIIEEPEVFYCAPADDYLPQPEAVMITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L+ GI E +FA I F P T +GYN I FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQVALSQGINEAEFAKRIHAAFSVPNTCIMGYNNIRFDDEVTRNIFYRNFYDPYAYSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
SRWDL++ ++A + L P GI WP + PS +LEHL+ N ++H+ AHDA+SDV A
Sbjct: 129 QGNSRWDLLDTLRACFALRPEGIQWPENEDSLPSMRLEHLTKANGVAHENAHDAMSDVLA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PR+F++ LR K + I P +++ MF + SY+SL+ P+
Sbjct: 189 TINMAKLLKAAQPRMFDYFYQLRNKNKISQLIDIVEITPLVHVSGMFGALRSYVSLVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSF--KEDIPISMIHLNRSPIV 609
HP NKN +I +L D + D+ ++R L K +P+ ++H+N+ PI+
Sbjct: 249 AWHPDNKNAVIMCDLSADISPLIELDVQQLRTRLYTPKAELAGASPVPVKLVHINKCPIL 308
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKC--ASSILNNTYIWKKIFLDYKI-NNSDLELNI 666
K L R D + +N++ + N I ++F + +I SD ++
Sbjct: 309 APE-KTLRPEDAQRTGVDRDLCMRNLETLRKHPEIRNKLI--ELFSEPQIFAESD---DV 362
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
D ++YN F S D + I+R SP+ L + FE+K+++EL F Y+ARN+ TLSY E
Sbjct: 363 DTQIYNGFFSPSDRSTMDIIRETSPQNLPALELSFEDKRMKELFFRYKARNYPATLSYDE 422
Query: 727 LKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK---ILNALLMYGK 778
+RW ++R R Y + L Y++ LL ++HD K L AL+ Y +
Sbjct: 423 QQRWLQHR--RDYFNEERLTE----YMQQIQLLLVEHQHDEKRCQQLKALINYAR 471
>gi|419340292|ref|ZP_13881765.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC12E]
gi|378189624|gb|EHX50215.1| exonuclease I, 3' -- 5' specific deoxyribophosphodiesterase
[Escherichia coli DEC12E]
Length = 474
Score = 321 bits (823), Expect = 2e-84, Method: Composition-based stats.
Identities = 166/434 (38%), Positives = 249/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I +P +++ MF + S + P
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVTQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 361 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 420
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 421 AEQQRWLEHRRQVF 434
>gi|420325945|ref|ZP_14827701.1| exodeoxyribonuclease I [Shigella flexneri CCH060]
gi|391251687|gb|EIQ10897.1| exodeoxyribonuclease I [Shigella flexneri CCH060]
Length = 474
Score = 321 bits (822), Expect = 2e-84, Method: Composition-based stats.
Identities = 165/433 (38%), Positives = 248/433 (57%), Gaps = 13/433 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT I
Sbjct: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF+++ + R K ++A I P P +++ MF + S + P+
Sbjct: 189 TIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMPPLVHVSGMFGAWSGNTSWVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P V
Sbjct: 249 AWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLELN 665
++ L R + N+K + N + +K+ + +D N
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPTD---N 361
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 VDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYA 421
Query: 726 ELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 EQQRWLEHRRQVF 434
>gi|423686248|ref|ZP_17661056.1| exonuclease I [Vibrio fischeri SR5]
gi|371494316|gb|EHN69914.1| exonuclease I [Vibrio fischeri SR5]
Length = 474
Score = 321 bits (822), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 172/476 (36%), Positives = 264/476 (55%), Gaps = 12/476 (2%)
Query: 305 LLHNGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPR 364
+ N +F ++DYET+G + DRP QFA +RTD N I P+++YC+P D+LP P
Sbjct: 1 MPQNNAPSFFFFDYETWGTSPSLDRPCQFAGVRTDEDFNIIGEPLVIYCRPPVDYLPSPE 60
Query: 365 ACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLIN 424
ACLIT ITPQ +N G+ E +F + I +P T S+GYN I FDDE++R+ +RN
Sbjct: 61 ACLITGITPQTAVNKGLSEPEFIAKIHHELSQPNTCSLGYNNIRFDDEVSRYTLYRNFFE 120
Query: 425 PYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHD 484
PY W+N SRWDL++V++A Y L P GI WP G+PSFKLE+LS N + H AHD
Sbjct: 121 PYGWSWQNGNSRWDLLDVMRAVYALRPEGINWPKDEEGRPSFKLENLSVANGIEHANAHD 180
Query: 485 ALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSY 544
A++DV AT+ LA+ ++ P++FN++LS+R KK I P +++ MF
Sbjct: 181 AMADVIATIELAKKVKQAQPKMFNYLLSMRNKKKAATLIDIVEMTPLMHVSGMFGVDRGN 240
Query: 545 ISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMI 601
IS + P+ HP N N +IT +L DP FL ++ ++ + K++ D +P+ ++
Sbjct: 241 ISWIVPVAWHPTNNNAVITIDLALDPSVFLELNVEELHQRMYTKRSELGPDELPVPVKLV 300
Query: 602 HLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKIN-NS 660
HLN+ P V++ K L++ D +N+K I N I +K+ Y I N
Sbjct: 301 HLNKCP-VLAPAKTLTAENAANLNVDREACLRNLKV---IRENPEIRQKLIDLYSIEPNY 356
Query: 661 DLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIE 720
+ N+D LY+ F S D + I+R +P++L + + +++ L+F YRARNF
Sbjct: 357 EKSTNVDTLLYDGFFSHADKATIDIIRQSTPEQLIDFEPNVTDPRIKPLLFRYRARNFPH 416
Query: 721 TLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMY 776
TL+ E RW + + ++ Y + L +ES + N+ IL A+ Y
Sbjct: 417 TLNEAEQLRWHAH-LQDYFQTHLPDYEASFENLYLES---EGNDKKVAILKAVYNY 468
>gi|420336564|ref|ZP_14838141.1| exodeoxyribonuclease I [Shigella flexneri K-315]
gi|391262304|gb|EIQ21334.1| exodeoxyribonuclease I [Shigella flexneri K-315]
Length = 474
Score = 321 bits (822), Expect = 2e-84, Method: Composition-based stats.
Identities = 165/433 (38%), Positives = 248/433 (57%), Gaps = 13/433 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT I
Sbjct: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF+++ + R K ++A I P P +++ MF + S + P+
Sbjct: 189 TIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMPPLVHVSGMFGAWRGNTSWVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P V
Sbjct: 249 AWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLELN 665
++ L R + N+K + N + +K+ + +D N
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPTD---N 361
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 VDAQLYNGFFSDADRAAMKIVVETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYA 421
Query: 726 ELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 EQQRWLEHRRQVF 434
>gi|269138522|ref|YP_003295222.1| exonuclease I [Edwardsiella tarda EIB202]
gi|267984182|gb|ACY84011.1| exonuclease I [Edwardsiella tarda EIB202]
Length = 477
Score = 321 bits (822), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 173/477 (36%), Positives = 260/477 (54%), Gaps = 20/477 (4%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+TFL++DYETFG + RDRP QFA +RTD N I+ P + YC+ A D+LP P A +IT
Sbjct: 9 QNTFLFHDYETFGQHPARDRPAQFAGVRTDADFNIIEEPQVFYCRLADDYLPQPDAVMIT 68
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ L G E +FA I ++F PGT VGYN I FDDE++R +F+RN +PY
Sbjct: 69 GITPQTALAQGGCEAEFAERIHQMFSVPGTCVVGYNNIRFDDEVSRNLFYRNFFDPYAYS 128
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+N SRWDL++V++ Y L GI WP G PSFKLEHLS N + H AHDA++DV
Sbjct: 129 WQNGNSRWDLLDVVRTCYALRHEGIVWPENEQGLPSFKLEHLSQANGIEHSNAHDAMADV 188
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ LA+ ++ PRLF+++ LR K V I P +++ MF + SL+
Sbjct: 189 YATIALAKRVKQAQPRLFDYLFQLRNKNRVAQLIDIAAMTPLVHVSGMFGALRGNTSLIA 248
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSP 607
P+ HP NKN +I +L D L D +R+ L ++ + +PI ++H+N+ P
Sbjct: 249 PLAWHPENKNAVIVCDLDSDITPLLTLDATALRERLYTPRSELGDAAPVPIKLVHINKCP 308
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKI---FLDYK-INNSDLE 663
++ +L N R D N+ + + ++ I K+ F D SD
Sbjct: 309 VLAPEKTLLVDNAA-RLGLDRQRCRDNL---ALLQQHSEIRDKVVSLFADAPPFPPSD-- 362
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
++D +LY+ F S D + I+R+ P+ L ++ F + ++ L+F YRARN+ TL
Sbjct: 363 -DVDSQLYDGFFSDADRQAMQIIRATQPQNLPALDLRFSDPRITPLLFRYRARNYPATLD 421
Query: 724 YKELKRWKKYRISRFYNKK--NNLYNINMFYLEIESLLKKANEHDTKILNALLMYGK 778
E +RW+++R + ++ + L + M Y E +K +L AL Y +
Sbjct: 422 ENERRRWQQHRQAMLTPQRVQDYLQTLEMLYNRYEDQPQK-----LTLLRALFDYAR 473
>gi|425273168|ref|ZP_18664590.1| exonuclease [Escherichia coli TW15901]
gi|425283667|ref|ZP_18674716.1| exonuclease [Escherichia coli TW00353]
gi|408193584|gb|EKI19103.1| exonuclease [Escherichia coli TW15901]
gi|408202358|gb|EKI27471.1| exonuclease [Escherichia coli TW00353]
Length = 474
Score = 321 bits (822), Expect = 2e-84, Method: Composition-based stats.
Identities = 166/434 (38%), Positives = 249/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 8 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 68 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++ PSF+LEHL+ N + H AHDA++DV
Sbjct: 128 QHDNSRWDLLDVMRACYALRPEGINWPENDDDLPSFRLEHLTKANGIEHSNAHDAMADVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 188 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 248 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 307 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 361 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 420
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 421 AEQQRWLEHRRQVF 434
>gi|417275788|ref|ZP_12063121.1| exodeoxyribonuclease I [Escherichia coli 3.2303]
gi|345432728|dbj|BAK69057.1| exonuclease I [Escherichia coli O157:H16]
gi|386241624|gb|EII78541.1| exodeoxyribonuclease I [Escherichia coli 3.2303]
Length = 475
Score = 321 bits (822), Expect = 2e-84, Method: Composition-based stats.
Identities = 166/434 (38%), Positives = 249/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++ PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDDLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|385788735|ref|YP_005819844.1| exonuclease I [Erwinia sp. Ejp617]
gi|310768007|gb|ADP12957.1| exonuclease I [Erwinia sp. Ejp617]
Length = 475
Score = 321 bits (822), Expect = 2e-84, Method: Composition-based stats.
Identities = 163/430 (37%), Positives = 252/430 (58%), Gaps = 13/430 (3%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD+ N I P + YC+PA D+LP P A +IT
Sbjct: 8 STFLFHDYETFGKSPSLDRPAQFAAIRTDMDFNLIGEPEVFYCRPADDYLPQPEAVMITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G+ E +F I ++F P T VGYN + FDDE++R +F+RN +PY W
Sbjct: 68 ITPQIARARGLSEAEFTCRIHQLFSVPNTCVVGYNNVRFDDEVSRHLFYRNFYDPYAWSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
++ SRWDL++V++A Y L P GITWP ++G PSF+LEHL+ N ++H+ AHDA+SDV
Sbjct: 128 QHGNSRWDLLDVMRACYALRPDGITWPENDDGFPSFRLEHLTKANGVAHENAHDAMSDVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+ ++ PRL++F+ S R K+ + I P +P +I+ MF + S + P
Sbjct: 188 ATIAMAKRVKEKQPRLYDFLFSHRNKQKISTLIDIPQMKPLVHISGMFGAARGNTSWIAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFK--EDIPISMIHLNRSPI 608
+ HP N+N LIT +L D L D + +R L ++ +P+ ++H+N+ P
Sbjct: 248 LAWHPDNRNALITCDLDGDMAPLLELDADALRARLYTRREELDGASPVPLKLVHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKI---FLDYK-INNSDLEL 664
V++ L + R D N+ + + + + +K+ F D + SD
Sbjct: 307 VVAPANTLRAEDAERIGIDRQRCLDNL---ALLRQHPEVREKVVTLFADAQPFTPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
++D +LYN F S D + I+R + + L ++ F + ++E+L+F +RARNF TL
Sbjct: 361 DVDAQLYNGFFSDADRNAMNIVRQTAAENLPALDLTFNDARIEKLLFRFRARNFPGTLDD 420
Query: 725 KELKRWKKYR 734
E +RW ++R
Sbjct: 421 MEQQRWLQHR 430
>gi|407072323|ref|ZP_11103161.1| exonuclease I [Vibrio cyclitrophicus ZF14]
Length = 474
Score = 321 bits (822), Expect = 2e-84, Method: Composition-based stats.
Identities = 169/476 (35%), Positives = 271/476 (56%), Gaps = 18/476 (3%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
+ T+ ++DYET+G++ +DRP QFA +RTD N I P+++YC+P D+LP P A L
Sbjct: 4 DNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAAL 63
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
IT+ITPQ ++ G+PE +F + I KP T S+GYN+I FDDE+TR+ +RN I+PY
Sbjct: 64 ITRITPQKAMSQGLPEPEFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYA 123
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
W+N SRWDL++V++A + L P GI WP G PSFKLEHLS N + H+ AHDA++
Sbjct: 124 WSWQNGNSRWDLLDVMRAVHALRPEGIVWPENEEGYPSFKLEHLSVANGIEHENAHDAMA 183
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ LA+ ++ P++F+++ S+R K+ + + P +++ MF +Y S
Sbjct: 184 DVIATIELAKKLKAAQPKMFDYLYSMRHKRKLNELVDIVNMTPLMHVSGMFGRDCNYTSW 243
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
+ P+ HP N+N +I +L DP L D + +R+ L K++ ED +PI ++ LN
Sbjct: 244 IVPMAWHPTNQNAVIVVDLAKDPSPLLELDSDALRERLYTKRSELGEDELPVPIKLVQLN 303
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY----KINNS 660
+ PI ++ K L++ D KN+ + + + I +K+ Y + S
Sbjct: 304 KCPI-LAPAKTLTAENAETIGIDRQQCLKNL---ALLREHPEIREKLIGLYSQEREYEKS 359
Query: 661 DLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIE 720
D ++D LY+ F S D + I+R P L+ ++ F +++++ L+F YRAR+F
Sbjct: 360 D---DVDTHLYDGFFSPGDKTAMDIIRQTDPNNLAALDITFGDERIKPLLFRYRARHFPW 416
Query: 721 TLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMY 776
TL E +W + FY + Y +N+ L E +++E IL A+ Y
Sbjct: 417 TLDEAEQLKWANH-CREFYESRLEEYMLNLENLAHE---HESDEKKMAILKAVYQY 468
>gi|317048759|ref|YP_004116407.1| exodeoxyribonuclease I [Pantoea sp. At-9b]
gi|316950376|gb|ADU69851.1| Exodeoxyribonuclease I [Pantoea sp. At-9b]
Length = 473
Score = 321 bits (822), Expect = 2e-84, Method: Composition-based stats.
Identities = 163/429 (37%), Positives = 247/429 (57%), Gaps = 13/429 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFA +RTD N I P + YC+PA D+LP P A +IT I
Sbjct: 7 TFLFHDYETFGKSPSLDRPAQFAGLRTDKDFNAIGEPQVFYCQPADDYLPQPEAVMITGI 66
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+ E FA I +F +P T VGYN + FDDE+TR +F+RN +PY W+
Sbjct: 67 TPQTAQARGVTEAAFAERIHGLFSEPQTCVVGYNNVRFDDEVTRNIFYRNFFDPYGWSWQ 126
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++A Y L P GI WP ++G PSFKLEHL+ N ++H++AHDA+SDV A
Sbjct: 127 NGNSRWDLLDVMRACYALRPEGIVWPENDDGFPSFKLEHLTKANGVAHEQAHDAMSDVYA 186
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
TL +A+L++ P+LF F+ S R K+ ++ I P +P +++ MF + S + P+
Sbjct: 187 TLAMAKLVKEKQPKLFEFLFSHRNKQKLMTLIDIPQMKPLVHVSGMFGAARGNTSWVVPL 246
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N LI +L D L +++R+ L + + + +PI ++H+N+ P V
Sbjct: 247 AWHPDNRNALIVADLAGDMSPLLTLSPDELRERLYTRHSELGDQAAVPIKLVHINKCP-V 305
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNI---KCASSILNNTYIWKKIFLDYK-INNSDLELN 665
++ L R D N+ + + + N +F + + SD +
Sbjct: 306 LAPANTLRPEDAERLNIDRQHCLANLALLRQHAEVRENVV---TLFAEAEPFTPSD---D 359
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LYN F S D + I+R + L ++ F++K++ L+F YRARNF TL
Sbjct: 360 VDAQLYNGFFSDADRAAMNIVRQTPAQNLPALDLTFDDKRIARLLFRYRARNFPGTLDDA 419
Query: 726 ELKRWKKYR 734
E +RW ++R
Sbjct: 420 EQQRWLQHR 428
>gi|170769782|ref|ZP_02904235.1| exodeoxyribonuclease I [Escherichia albertii TW07627]
gi|170121396|gb|EDS90327.1| exodeoxyribonuclease I [Escherichia albertii TW07627]
Length = 475
Score = 320 bits (821), Expect = 3e-84, Method: Composition-based stats.
Identities = 166/439 (37%), Positives = 251/439 (57%), Gaps = 9/439 (2%)
Query: 305 LLHNG--NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPD 362
+++NG TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP
Sbjct: 1 MMNNGKHQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEIFYCKPADDYLPQ 60
Query: 363 PRACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNL 422
P A LIT ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN
Sbjct: 61 PGAVLITGITPQEARAKGENEAAFATRIHSLFTVPNTCILGYNNVRFDDEVTRNIFYRNF 120
Query: 423 INPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKA 482
+PY W+++ SRWDL++V++A Y L P GI WP G PSF+LEHL+ N + H A
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENEEGLPSFRLEHLTKANGIEHSNA 180
Query: 483 HDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKH 542
HDA++DV AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF +
Sbjct: 181 HDAMADVYATIAIAKLVKTRQPRLFDYLYTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240
Query: 543 SYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISM 600
S + P+ HP N+N +I +L D L D + +R+ L K ++ +P+ +
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKL 300
Query: 601 IHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINN 659
+H+N+ P V++ L R + N+K + N + +K+ + +
Sbjct: 301 VHINKCP-VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEP 356
Query: 660 SDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFI 719
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF
Sbjct: 357 FTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFP 416
Query: 720 ETLSYKELKRWKKYRISRF 738
TL Y E +RW ++R F
Sbjct: 417 GTLDYAEQQRWLEHRRQVF 435
>gi|416051639|ref|ZP_11577687.1| exodeoxyribonuclease I [Aggregatibacter actinomycetemcomitans
serotype e str. SC1083]
gi|347993072|gb|EGY34449.1| exodeoxyribonuclease I [Aggregatibacter actinomycetemcomitans
serotype e str. SC1083]
Length = 475
Score = 320 bits (821), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 167/433 (38%), Positives = 245/433 (56%), Gaps = 7/433 (1%)
Query: 305 LLHNGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPR 364
++ + +F YDYE+FG+N DRP QF IRTD N I PI+LYCK D+LP P
Sbjct: 1 MMAKNDFSFFIYDYESFGVNPATDRPAQFGGIRTDADFNIIGEPIVLYCKQTNDYLPAPE 60
Query: 365 ACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLIN 424
A L+T ITPQ C G+PE +FA+ I + F +P T +G+N I +DDE+TR+ F+RN I+
Sbjct: 61 AVLVTGITPQECNEKGLPEPEFAARILQEFSQPNTCVMGFNNIRYDDEMTRYTFYRNFID 120
Query: 425 PYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHD 484
PYE WKN SRWDL+++++A Y L P GI WP + G PSF+LE L+ N + H AHD
Sbjct: 121 PYEYSWKNGNSRWDLLDLVRACYALRPDGIEWPLDDEGMPSFRLEKLTEANGIVHDNAHD 180
Query: 485 ALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSY 544
A+SDV AT+ +A+LI+ P+LF + R KK V I P +++ M +
Sbjct: 181 AMSDVYATIEMAKLIKQKQPKLFQYFFENRGKKEVEKLIDTAEMTPLVHVSGMLGNYRGN 240
Query: 545 ISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISM 600
+L+ P+ HP NKN +I +L + L ++R+ L KK + +P+ +
Sbjct: 241 TTLIAPLAWHPTNKNAVIVCDLTANIDDLLTKSAEELRENLYTKKETLLAAGTLPVPLKL 300
Query: 601 IHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS 660
IH+N+ PIV +L N D +N + + IF ++
Sbjct: 301 IHINKCPIVAPAKTLLPQNAEC-LGIDQELCARNRQRLQEARDIRQKVMNIF--HQEREF 357
Query: 661 DLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIE 720
D+ N++ ELYN F S D +AILR + P+KL+ N F++ ++ EL+F YRAR+F
Sbjct: 358 DVSDNVETELYNGFFSDADKNNMAILRILEPEKLAEHNLSFQDPRIPELLFHYRARHFYH 417
Query: 721 TLSYKELKRWKKY 733
TL+ E +W+KY
Sbjct: 418 TLNRAEQIKWQKY 430
>gi|429105225|ref|ZP_19167094.1| Exodeoxyribonuclease I [Cronobacter malonaticus 681]
gi|426291948|emb|CCJ93207.1| Exodeoxyribonuclease I [Cronobacter malonaticus 681]
Length = 491
Score = 320 bits (821), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 174/475 (36%), Positives = 258/475 (54%), Gaps = 14/475 (2%)
Query: 309 GNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLI 368
TFL++DYETFG + DRP QFAA+RTD I P + YCKPA D+LP P A LI
Sbjct: 22 AQPTFLFHDYETFGKSPSLDRPAQFAALRTDENFTVIGEPDVFYCKPADDYLPQPEAVLI 81
Query: 369 TKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYER 428
T ITPQ G E FA I +F P T VGYN + FDDE+TR +F+RN +PY
Sbjct: 82 TGITPQVARARGENEADFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAW 141
Query: 429 EWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSD 488
W+N+ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++D
Sbjct: 142 SWQNDNSRWDLLDVMRACYALRPEGIVWPENSDGLPSFRLEHLTVANGIEHANAHDAMAD 201
Query: 489 VRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLM 548
V AT+ +A+L++ PR+F+++ + R K+ + I +P +++ MF + S +
Sbjct: 202 VYATIAMAQLVKTRQPRMFDYLYTYRSKQKLATLIDTVQMKPLVHVSGMFGAWRGNTSWI 261
Query: 549 WPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRS 606
PI HP N+N +I +L D L + + +R+ L K + E +P+ ++HLN+
Sbjct: 262 APIAWHPENRNAVIVVDLAGDISPLLELNADDLRERLYTPKAALGEASAVPVKLVHLNKC 321
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDLELN 665
P V++ L R D N+K +F D +D N
Sbjct: 322 P-VLAQANTLRPEDAERLGIDRQHCLNNLKVLRDSPQVREKLVALFADAPPFPPTD---N 377
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LY+ F S D + I+ P+ L ++ F +K++E+L+F YRARNF TLS +
Sbjct: 378 VDAQLYDGFFSDADRAAMRIVLETPPQNLPALDITFVDKRIEKLLFNYRARNFPGTLSEQ 437
Query: 726 ELKRWKKYRISRFYNKKNNLY--NINMFYLEIESLLKKANEHDTKILNALLMYGK 778
E +RW +R F + Y + M Y + ES ++ T +L AL Y +
Sbjct: 438 EQERWLTHRRDVFTPEFLQAYAQELEMLYNQYES-----DKEKTALLKALYQYAQ 487
>gi|429026998|ref|ZP_19093053.1| exodeoxyribonuclease I [Escherichia coli 96.0427]
gi|427280764|gb|EKW45115.1| exodeoxyribonuclease I [Escherichia coli 96.0427]
Length = 475
Score = 320 bits (821), Expect = 3e-84, Method: Composition-based stats.
Identities = 166/434 (38%), Positives = 249/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ H N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHLENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
>gi|366161117|ref|ZP_09460979.1| exonuclease I [Escherichia sp. TW09308]
Length = 474
Score = 320 bits (821), Expect = 3e-84, Method: Composition-based stats.
Identities = 166/433 (38%), Positives = 248/433 (57%), Gaps = 13/433 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT I
Sbjct: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNIIGEPEVFYCKPADDYLPQPGAVLITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P+
Sbjct: 189 TIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R+ L K + +P+ ++H+N+ P V
Sbjct: 249 AWHPENRNAVIMVDLAGDISPLLELDSDMLRERLYTAKADLGNNAAVPVKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLELN 665
++ L R + N+K + N + +K+ + SD N
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFMPSD---N 361
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 VDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYA 421
Query: 726 ELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 EQQRWLEHRRQVF 434
>gi|423206540|ref|ZP_17193096.1| hypothetical protein HMPREF1168_02731 [Aeromonas veronii AMC34]
gi|404622092|gb|EKB18957.1| hypothetical protein HMPREF1168_02731 [Aeromonas veronii AMC34]
Length = 475
Score = 320 bits (821), Expect = 3e-84, Method: Composition-based stats.
Identities = 173/482 (35%), Positives = 262/482 (54%), Gaps = 28/482 (5%)
Query: 307 HNGNS-TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRA 365
H GN TF ++DYETFG++ +DRP QFA IRTD N I P+++YCKP D+LPDP A
Sbjct: 6 HFGNEPTFYFHDYETFGISPAKDRPSQFAGIRTDADFNIIGEPLVIYCKPPADYLPDPEA 65
Query: 366 CLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINP 425
CLIT ITPQ + +G+ E F I + F P T +GYN+I FDDE+TR+ +RN +P
Sbjct: 66 CLITGITPQKAMKDGLCEADFIRQIHEQFATPNTCVLGYNSIRFDDEVTRYTLYRNFYDP 125
Query: 426 YEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDA 485
Y W+N SRWD++++++A Y L P GI W + GKPSF+LE L+ N ++H AHDA
Sbjct: 126 YAYSWQNGNSRWDILDMLRACYALRPEGIEWAFDEEGKPSFRLEKLTVANGVAHANAHDA 185
Query: 486 LSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYI 545
LSDV AT+ +A+L++ P+LF ++ LR K V A I +P +++ MFS +
Sbjct: 186 LSDVLATIEMAKLVKKAQPKLFGYLFDLRNKNKVKALIDVVTMKPLVHVSGMFSPWQGCV 245
Query: 546 SLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHL 603
S + P+ HP N+N +I +L DP + +IR+ L KK + IP+ ++H+
Sbjct: 246 SWVSPLAWHPTNQNAVIMVDLTRDPTPLIELTSEEIRERLYTKKEELGDLAGIPVKLVHI 305
Query: 604 NRSPIVISNLKVLSSNL--------MFRYKFDLNCAFKNIKCA-SSILNNTYIWKKIFLD 654
N+ P++ + + R DL A ++ + N +
Sbjct: 306 NKCPVLAPAATLTAERADQLGIDREQCRKSLDLLRAHPEVREKLVEVFNQEFAGS----- 360
Query: 655 YKINNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYR 714
N+SD D +LY F D + ++R+ L + F F + +L E++F YR
Sbjct: 361 ---NDSD----PDTQLYAGFFGHGDKSTMDLVRATPADLLGDREFAFTDARLPEMLFRYR 413
Query: 715 ARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALL 774
ARN+ TLS E KRW+ + S +++ + Y + LE + + NE + IL +L
Sbjct: 414 ARNWPHTLSETEQKRWRLH-CSDYFSSRLPDY---VPRLEALAEQNQGNERNFAILKSLY 469
Query: 775 MY 776
Y
Sbjct: 470 RY 471
>gi|311278993|ref|YP_003941224.1| Exodeoxyribonuclease I [Enterobacter cloacae SCF1]
gi|308748188|gb|ADO47940.1| Exodeoxyribonuclease I [Enterobacter cloacae SCF1]
Length = 474
Score = 320 bits (820), Expect = 3e-84, Method: Composition-based stats.
Identities = 165/429 (38%), Positives = 244/429 (56%), Gaps = 7/429 (1%)
Query: 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKIT 372
FL++DYETFG + DRP QFAA+RTD N I P + YCKPA D+LP P+A LIT IT
Sbjct: 10 FLFHDYETFGTSPSLDRPAQFAALRTDGDFNVIGEPEVFYCKPADDYLPQPQAVLITGIT 69
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
PQ L G E FA I +F P T VGYN + FDDE+TR +F+RN +PY W+N
Sbjct: 70 PQEALAKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQN 129
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRAT 492
+ SRWDL++V++A Y L P GI WP +G PSF+LEHL+ N + H AHDA++DV AT
Sbjct: 130 HNSRWDLLDVMRACYALRPEGINWPENEDGLPSFRLEHLTRANGIEHSNAHDAMADVYAT 189
Query: 493 LGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPIC 552
+ +A+L+++ PRLF+++ + R K + I P +P +++ MF + S + P+
Sbjct: 190 IAMAQLVKSRQPRLFDYLYTYRNKNKLATLIDVPQMKPLVHVSGMFGAWRGNTSWIAPLA 249
Query: 553 IHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIVI 610
HP N+N +I +L D L +++RD L K S + +P+ ++HLN+ P V+
Sbjct: 250 WHPDNRNAVIVVDLAGDMSPLLELTADELRDRLYTAKASLGDLAAVPVKLVHLNKCP-VL 308
Query: 611 SNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL-ELNIDEE 669
+ L R + N+K + +N + K+ + + N+D +
Sbjct: 309 AQANTLRPEDADRLGINRQQCLDNLKL---LRDNPQVRDKVVAIFADAAPFVPSQNVDAQ 365
Query: 670 LYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKR 729
LYN F S D + IL P+ L ++ F + ++E+L+F YRARNF TL E +R
Sbjct: 366 LYNGFFSDADRAAMKILLETEPRNLPALDLTFADTRIEKLLFNYRARNFPGTLDDAEQQR 425
Query: 730 WKKYRISRF 738
W ++R F
Sbjct: 426 WLQHRREVF 434
>gi|421897737|ref|ZP_16328104.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2]
gi|206588943|emb|CAQ35905.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2]
Length = 944
Score = 320 bits (820), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 145/270 (53%), Positives = 201/270 (74%), Gaps = 4/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++ALPD+RN + FP GA+YG + MLRKL +Y A Y AC+FDAKGK FR+
Sbjct: 11 VDGSSYLYRAYHALPDLRNGEGFPTGAIYGIVNMLRKLRNDYPAKYSACVFDAKGKTFRD 70
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LYP+YK R MP +L QI IH+ V+A+GWPIL++ GVEADDVIGTLA++A + +
Sbjct: 71 ELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVIGTLAERAA-REGI 129
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
+ ++ST DKD+AQLV++ + L+N +N+ D + ++FGV PEKIVDY SLIGD DN+
Sbjct: 130 RTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGVQAKFGVPPEKIVDYLSLIGDTVDNV 189
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV K+GPKTAVK L++Y SL+N+I A IKGV+G+NLR L+WLPK +++LT+KTDCD
Sbjct: 190 PGVPKVGPKTAVKWLSEYGSLDNVIARAGEIKGVVGENLRSTLDWLPKGRELLTVKTDCD 249
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L+ ++ S ++L+ +D L F +Y
Sbjct: 250 LSPDVPSF-DALVDGGEDRARLADFFGRYG 278
>gi|329298840|ref|ZP_08256176.1| exonuclease I [Plautia stali symbiont]
Length = 473
Score = 320 bits (820), Expect = 4e-84, Method: Composition-based stats.
Identities = 161/427 (37%), Positives = 247/427 (57%), Gaps = 11/427 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFA +RTD N + P + YC+ A D+LP P A +IT I
Sbjct: 7 TFLFHDYETFGKSPSLDRPAQFAGLRTDKAFNAVGEPQVFYCQLADDYLPQPEAVMITGI 66
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+ E +FA I +F +P T +GYN + FDDE+TR +F+RN I+PY W+
Sbjct: 67 TPQVANARGVQEVEFAQRIHALFSEPQTCVIGYNNVRFDDEVTRNIFYRNFIDPYGWSWQ 126
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++A Y L P GI WP ++G PSFKLEHL+ N ++H++AHDA+SDV A
Sbjct: 127 NGNSRWDLLDVMRACYALRPEGIVWPENDDGFPSFKLEHLTQANGVAHEQAHDAMSDVYA 186
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
TL +A+L++ P+LF F+ + R K+ ++ I P +P +++ MF + S + P+
Sbjct: 187 TLAMAKLVQEKQPKLFEFLFTHRNKQKLMTLIDIPQMKPLVHVSGMFGAARGNTSWIVPL 246
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIV 609
HP NKN LI +L D L +++R+ L + + + +PI ++H+N+ P V
Sbjct: 247 AWHPDNKNALIVADLAGDMTPLLTLSPDELRERLYTRHSDLGDLPAVPIKLVHINKCP-V 305
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKN---IKCASSILNNTYIWKKIFLDYKINNSDLELNI 666
++ L R D N ++ + + N + L + ++
Sbjct: 306 LAPANTLRPEDAERLGIDRQHCLANLALLRQHAEVRENV-----VTLFAEAEPFTPSEDV 360
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
D +LY+ F S D + ILR P+ L ++ FE+K++ +L+F YRARNF TL KE
Sbjct: 361 DAQLYDGFFSDADRAGMNILRQTPPQNLPALDLTFEDKRIAKLLFRYRARNFPGTLDDKE 420
Query: 727 LKRWKKY 733
+RW ++
Sbjct: 421 QQRWLQH 427
>gi|86146813|ref|ZP_01065133.1| exonuclease I [Vibrio sp. MED222]
gi|218709702|ref|YP_002417323.1| exonuclease I [Vibrio splendidus LGP32]
gi|85835463|gb|EAQ53601.1| exonuclease I [Vibrio sp. MED222]
gi|218322721|emb|CAV18897.1| Exodeoxyribonuclease I [Vibrio splendidus LGP32]
Length = 474
Score = 320 bits (820), Expect = 4e-84, Method: Composition-based stats.
Identities = 169/476 (35%), Positives = 271/476 (56%), Gaps = 18/476 (3%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
+ T+ ++DYET+G++ +DRP QFA +RTD N I P+++YC+P D+LP P A L
Sbjct: 4 DNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAAL 63
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
IT+ITPQ + G+PE +F + I +P T S+GYN+I FDDE+TR+ +RN I+PY
Sbjct: 64 ITRITPQKAASQGLPEPEFIAKIHAELARPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYA 123
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
W+N SRWDL++V++A + L P GI WP G PSFKLEHLS N + H+ AHDA++
Sbjct: 124 WSWQNGNSRWDLLDVMRAVHALRPEGIVWPENEEGYPSFKLEHLSVANGIEHENAHDAMA 183
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ LA+ ++ P++F+++ ++R K+ + + P +++ MF +Y S
Sbjct: 184 DVIATIELAKKLKAAQPKMFDYLYNMRHKRKLNDLVDIVNMTPLMHVSGMFGRDCNYTSW 243
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
+ P+ HP N+N +I +L DP L D +++RD L K++ ED +PI ++ LN
Sbjct: 244 IVPMAWHPTNQNAVIVVDLAKDPSPLLELDADELRDRLYTKRSELSEDELPVPIKLVQLN 303
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY----KINNS 660
+ PI ++ K L++ D KN+ + + + I +K+ Y + S
Sbjct: 304 KCPI-LAPAKTLTAENAETIGIDRQQCLKNL---ALLREHPEIREKLIGLYSQEREYEKS 359
Query: 661 DLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIE 720
D ++D LY+ F S D + I+R P L+ ++ F +++++ L+F YRARNF
Sbjct: 360 D---DVDTHLYDGFFSPADKTAMNIIRETDPNNLAALDITFSDERIKPLLFRYRARNFPW 416
Query: 721 TLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMY 776
TL E +W + FY + Y +N+ L E +++E IL A+ Y
Sbjct: 417 TLDEAEQLKWANH-CREFYECRLEEYMLNLENLAHE---HESDEKKMAILKAVYQY 468
>gi|432584277|ref|ZP_19820674.1| exodeoxyribonuclease I [Escherichia coli KTE57]
gi|431116079|gb|ELE19540.1| exodeoxyribonuclease I [Escherichia coli KTE57]
Length = 475
Score = 320 bits (820), Expect = 4e-84, Method: Composition-based stats.
Identities = 166/434 (38%), Positives = 249/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDD 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 NEQQRWLEHRRQVF 435
>gi|401674947|ref|ZP_10806944.1| exonuclease I [Enterobacter sp. SST3]
gi|400217962|gb|EJO48851.1| exonuclease I [Enterobacter sp. SST3]
Length = 474
Score = 320 bits (820), Expect = 4e-84, Method: Composition-based stats.
Identities = 172/472 (36%), Positives = 261/472 (55%), Gaps = 14/472 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A ++T I
Sbjct: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDDEFNIIGEPEVFYCKPADDYLPQPGAVMVTGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+ E +FA I +F P T VGYN I FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQEAREKGVNEAEFARRIHDLFTVPNTCVVGYNNIRFDDEVTRNIFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI WP G SF+LEHL+ N + H AHDA++DV A
Sbjct: 129 NRNSRWDLLDIMRACYALRPEGIHWPENEEGLTSFRLEHLTRANGIEHSNAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L+++ PRLF ++LS R K+ ++ I P +P +I+ MF + S + P+
Sbjct: 189 TIAMAKLVKSAQPRLFEYLLSHRSKQKLMTLIDVPQMKPLVHISGMFGAWRGNTSWVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R+ L KN + +P+ ++H+N+ P V
Sbjct: 249 AWHPDNRNAVIMVDLAGDISPLLELDSDTLRERLYTPKNELGDLPAVPVKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL-ELNIDE 668
++ L R + N+K + N + +K+ + + N+D
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKV---LRENPQVREKVVAIFAEAEPFVPSENVDA 364
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
+LYN F S D + I+ P+ L ++ F +K++E+L+F YRARN+ TL E +
Sbjct: 365 QLYNGFFSDADRAAMNIVLQTEPRNLPALDITFADKRIEKLMFNYRARNYPGTLDEAEQE 424
Query: 729 RWKKYRISRFYNKKNNLY--NINMFYLEIESLLKKANEHDTKILNALLMYGK 778
RW ++R + F + + Y + M Y + E N +L +L Y +
Sbjct: 425 RWLQHRRNVFTPEYLHSYAQELEMLYGQNE-----GNAEKQALLKSLFQYAQ 471
>gi|416072162|ref|ZP_11584096.1| exodeoxyribonuclease I [Aggregatibacter actinomycetemcomitans
serotype f str. D18P1]
gi|347998032|gb|EGY38978.1| exodeoxyribonuclease I [Aggregatibacter actinomycetemcomitans
serotype f str. D18P1]
Length = 474
Score = 320 bits (820), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 167/426 (39%), Positives = 243/426 (57%), Gaps = 7/426 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YDYE+FG+N +DRP QF IRTD N I PI+LYCK D+LP P A L+T I
Sbjct: 7 SFFIYDYESFGVNPAKDRPAQFGGIRTDADFNIIGEPIVLYCKQTNDYLPAPEAVLVTGI 66
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C G+ E +FA+ I + F +P T +G+N I +DDE+TR+ F+RN I+PYE WK
Sbjct: 67 TPQECNEKGLSEPEFAAKILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWK 126
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI WP + G PSF LE L+ N ++H AHDA+SDV A
Sbjct: 127 NGNSRWDLLDLVRACYALRPDGIEWPLDDEGMPSFCLEKLTEANGIAHDNAHDAMSDVYA 186
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF + R KK V I P +++ M + +L+ +
Sbjct: 187 TIEMAKLIKQKQPKLFQYFFENRGKKEVEKLIDTAEMTPLVHVSGMLGNYRGNTTLIASL 246
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLNRSP 607
HP NKN +I +L + L + ++R+ L KK + +P+ +IH+N+ P
Sbjct: 247 AWHPTNKNAVIVCDLTANIDDLLTKSVEELRENLYTKKETLLAAGALPVPLKLIHINKCP 306
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
IV +L N R D KN + + IF ++ D N++
Sbjct: 307 IVAPAKTLLPQNAE-RLGIDQELCAKNRQRLQEARDIRQKVMDIF--HQEREFDASDNVE 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LYN F S D +AILRS+ P+KL+ N F++ ++ EL+F YRAR+F TL+ E
Sbjct: 364 TKLYNGFFSDADKNNMAILRSLEPEKLAKHNLSFQDPRIPELLFHYRARHFYRTLNRAEQ 423
Query: 728 KRWKKY 733
+W+KY
Sbjct: 424 IKWQKY 429
>gi|237807889|ref|YP_002892329.1| Exodeoxyribonuclease I [Tolumonas auensis DSM 9187]
gi|237500150|gb|ACQ92743.1| Exodeoxyribonuclease I [Tolumonas auensis DSM 9187]
Length = 506
Score = 320 bits (820), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 176/482 (36%), Positives = 271/482 (56%), Gaps = 23/482 (4%)
Query: 304 ILLHNGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDP 363
IL +TFL++DYETFG++ RDRP QFA IRTD N P+++YC+ +PD+LP P
Sbjct: 35 ILTAKTENTFLFHDYETFGIDPARDRPAQFAGIRTDADFNICGEPVVIYCQMSPDYLPAP 94
Query: 364 RACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLI 423
ACLIT ITPQ NGI E F I + F +P T +GYN I FDDE TR+ F+RN +
Sbjct: 95 EACLITGITPQIANQNGICEADFFRTIHQQFSQPATCVLGYNNIRFDDEFTRYGFYRNFL 154
Query: 424 NPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAH 483
+PY W+ SRWDL++V +AFY L P GI W Y GKPSF+LE LS N + H+ AH
Sbjct: 155 DPYAYSWQQGNSRWDLLDVARAFYALRPEGINWVYDAEGKPSFRLEKLSVANGIQHENAH 214
Query: 484 DALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHS 543
DA+SDV AT+GLA+ ++ PRLF ++ + R K + I +P +++ MFS+
Sbjct: 215 DAMSDVYATIGLAKSLKQAQPRLFEYLSTHRGKNKLKNLIDIINIKPLVHVSGMFSAVQG 274
Query: 544 YISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMI 601
+S + P+ HP N N +I +L D L +I ++R+ L +K+ + +P+ +I
Sbjct: 275 CVSWIAPMAWHPTNNNAVIVIDLHKDLSPLLELNITELRERLYTRKDDITDGSPVPVKLI 334
Query: 602 HLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYKIN 658
H+N+ P V++ LS + + +N+ + + N I +K +F D I
Sbjct: 335 HINKCP-VLAPASSLSEERAQELGINRDLCMQNL---AVLRQNPQIREKLAGLFSDEYIP 390
Query: 659 NSDLELNIDEE--LYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRAR 716
+ N D E LY F S+ D + +++ S ++L+ + F + +L L+F YRAR
Sbjct: 391 PA----NQDPEHMLYQGFFSEADRAAIDLIQQASAEQLAAGQYQFHDPRLPTLLFRYRAR 446
Query: 717 NFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLL--KKANEHDTKILNALL 774
N+ TLS +E ++W+++ + ++ + L +E+LL K + I+ AL
Sbjct: 447 NYPHTLSPREQQQWQQFCVDALNSRAEP------YLLRLEALLEGKVPGTREWNIIKALA 500
Query: 775 MY 776
+Y
Sbjct: 501 LY 502
>gi|410611302|ref|ZP_11322401.1| exodeoxyribonuclease I [Glaciecola psychrophila 170]
gi|410169153|dbj|GAC36290.1| exodeoxyribonuclease I [Glaciecola psychrophila 170]
Length = 476
Score = 320 bits (820), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 178/477 (37%), Positives = 277/477 (58%), Gaps = 13/477 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+++ W+DYET+G N ++D P QFA IRTD+ LN I P+M++ + A D LP P+ACL+T
Sbjct: 3 SASIYWHDYETWGANPQKDFPCQFAGIRTDLDLNVISEPLMIFSQIANDCLPVPQACLVT 62
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ L G+ E F + + + F KP T G+N I FDDEITR+ +RN +PY RE
Sbjct: 63 GITPQRSLKEGLSERDFIAKVHEQFSKPNTCVAGFNNIRFDDEITRYTLYRNFYDPYARE 122
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W++ SRWD+I++ +A Y L P GI WP G PSFKL+ L+ N + H+ AHDA+SDV
Sbjct: 123 WQHGNSRWDIIDLARACYALRPEGINWPVNEAGLPSFKLQDLTKANGIDHQGAHDAMSDV 182
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+LI+ P+LF+++ +LR K VL +I + P +I+ S H S +
Sbjct: 183 YATIAVAKLIKERQPKLFDYVFTLRDKIKVLEQIDYEKLTPLVHISSKIPSVHGCCSWIV 242
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ +HP NKN +IT NL DP ++IR+ L K +E+ +PI ++H+N+
Sbjct: 243 PVGMHPSNKNAVITLNLALDPSPLFTLSADEIRNRLYTPKAMLEENEQRLPIKLLHINKC 302
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNI 666
P V++ K LS+ R D +N++ I N +I +K+ Y L+
Sbjct: 303 P-VLAPAKTLSTENAERLGIDRQGCLQNLQ---KIKANKHIIEKLQEVYVPTERRTSLDP 358
Query: 667 DEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+ LY+ F S D + + + L+ ++ FE+ +L L+F YRARN ++LS
Sbjct: 359 EHALYSGGFFSSIDKEFMNQIVNSDVHGLTEISLPFEDDRLNTLLFRYRARNIPQSLSEP 418
Query: 726 ELKRWKKYRISRFYNKKNNLYNINM--FYLEIESL-LKKANEHDT-KILNALLMYGK 778
E+++W++YR +F++ ++ +I M F L++E L ++ A D IL AL Y +
Sbjct: 419 EIEKWQRYRHFKFFDDESPA-SIKMPEFLLQLEQLSIEHARNPDKLTILKALYNYAQ 474
>gi|421891276|ref|ZP_16322087.1| DNA polymerase I (POL I) [Ralstonia solanacearum K60-1]
gi|378963385|emb|CCF98835.1| DNA polymerase I (POL I) [Ralstonia solanacearum K60-1]
Length = 944
Score = 320 bits (819), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 145/270 (53%), Positives = 201/270 (74%), Gaps = 4/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++ALPD+RN + FP GA+YG + MLRKL +Y A Y AC+FDAKGK FR+
Sbjct: 11 VDGSSYLYRAYHALPDLRNGEGFPTGAIYGIVNMLRKLRNDYPAKYSACVFDAKGKTFRD 70
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LYP+YK R MP +L QI IH+ V+A+GWPIL++ GVEADDVIGTLA++A + +
Sbjct: 71 ELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVIGTLAERAA-REGI 129
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
+ ++ST DKD+AQLV++ + L+N +N+ D + ++FGV PEKIVDY SLIGD DN+
Sbjct: 130 RTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGVQAKFGVPPEKIVDYLSLIGDTVDNV 189
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV K+GPKTAVK L++Y SL+N+I A IKGV+G+NLR L+WLPK +++LT+KTDCD
Sbjct: 190 PGVPKVGPKTAVKWLSEYGSLDNVIARAGEIKGVVGENLRNTLDWLPKGRELLTVKTDCD 249
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L+ ++ S ++L+ +D L F +Y
Sbjct: 250 LSPDVPSF-DALVDGGEDRARLADFFGRYG 278
>gi|389840443|ref|YP_006342527.1| exonuclease I [Cronobacter sakazakii ES15]
gi|387850919|gb|AFJ99016.1| exonuclease I [Cronobacter sakazakii ES15]
Length = 491
Score = 320 bits (819), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 173/475 (36%), Positives = 258/475 (54%), Gaps = 14/475 (2%)
Query: 309 GNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLI 368
TFL++DYETFG + DRP QFAA+RTD I P + YCKPA D+LP P A LI
Sbjct: 22 AQPTFLFHDYETFGKSPSLDRPAQFAALRTDENFTVIGEPDVFYCKPADDYLPQPEAVLI 81
Query: 369 TKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYER 428
T ITPQ G E +FA I +F P T VGYN + FDDE+TR +F+RN NPY
Sbjct: 82 TGITPQVARARGENEAEFAKRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYNPYAW 141
Query: 429 EWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSD 488
W+N+ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++D
Sbjct: 142 SWQNDNSRWDLLDVMRACYALRPEGIVWPENSDGLPSFRLEHLTVANGIEHANAHDAMAD 201
Query: 489 VRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLM 548
V AT+ +A+L++ PR+F+++ + R K+ + I +P +++ MF + S +
Sbjct: 202 VYATIAMAQLVKTRQPRMFDYLYTYRSKQKLATLIDTVQMKPLVHVSGMFGAWRGNTSWI 261
Query: 549 WPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRS 606
P+ HP N+N +I +L D L + + +R+ L K + + +P+ ++HLN+
Sbjct: 262 APVAWHPDNRNAVIVVDLAGDISPLLELNADDLRERLYTPKAALGDASAVPVKLVHLNKC 321
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDLELN 665
P V++ L R D N+K +F D +D N
Sbjct: 322 P-VLAQANTLRPEDAERLGIDRQHCLNNLKVLRDSPQVREKLVALFADAPPFPPTD---N 377
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LY+ F S D + I+ P+ L ++ F +K++E+L+F YRARNF TLS +
Sbjct: 378 VDAQLYDGFFSDADRAAMRIVLETPPQNLPALDITFVDKRIEKLLFNYRARNFPGTLSEQ 437
Query: 726 ELKRWKKYRISRFYNKKNNLY--NINMFYLEIESLLKKANEHDTKILNALLMYGK 778
E RW +R F + Y + M Y + ES ++ T +L AL Y +
Sbjct: 438 EQARWLAHRRDVFTPEFLQAYAQELEMLYNQYES-----DKEKTALLKALYQYAQ 487
>gi|423199941|ref|ZP_17186521.1| hypothetical protein HMPREF1167_00104 [Aeromonas veronii AER39]
gi|404621166|gb|EKB18056.1| hypothetical protein HMPREF1167_00104 [Aeromonas veronii AER39]
Length = 475
Score = 320 bits (819), Expect = 5e-84, Method: Composition-based stats.
Identities = 173/482 (35%), Positives = 262/482 (54%), Gaps = 28/482 (5%)
Query: 307 HNGNS-TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRA 365
H GN TF ++DYETFG++ +DRP QFA IRTD N I P+++YCKP D+LPDP A
Sbjct: 6 HAGNEPTFYFHDYETFGISPAKDRPSQFAGIRTDADFNLIGEPLVIYCKPPADYLPDPEA 65
Query: 366 CLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINP 425
CLIT ITPQ + +G+ E F I + F P T +GYN+I FDDE+TR+ +RN +P
Sbjct: 66 CLITGITPQKAMKDGLCEADFIRQIHEQFATPNTCVLGYNSIRFDDEVTRYTLYRNFYDP 125
Query: 426 YEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDA 485
Y W+N SRWD++++++A Y L P GI W + + GKPSF+LE L+ N ++H AHDA
Sbjct: 126 YAYSWQNGNSRWDILDMLRACYALRPEGIEWAFDDEGKPSFRLEKLTVANGVAHANAHDA 185
Query: 486 LSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYI 545
LSDV AT+ +A+L++ P+LF ++ LR K V A I +P +++ MFS
Sbjct: 186 LSDVLATIEMAKLVKKAQPKLFGYLFDLRNKNKVKALIDVVTMKPLVHVSGMFSPWQGCA 245
Query: 546 SLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHL 603
S + P+ HP N+N +I +L DP + +IR+ L KK + IP+ ++H+
Sbjct: 246 SWVSPLAWHPTNQNAVIMVDLTRDPTPLIELTSEEIRERLYTKKEELGDLAGIPVKLVHI 305
Query: 604 NRSPIVISNLKVLSSNL--------MFRYKFDLNCAFKNIKCA-SSILNNTYIWKKIFLD 654
N+ P++ + + R DL A ++ + N +
Sbjct: 306 NKCPVLAPAATLTAERADELGINREQCRKSLDLLRAHPEVREKLVEVFNQEFAGS----- 360
Query: 655 YKINNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYR 714
N SD D +LY F D + ++R+ L F F + +L E++F YR
Sbjct: 361 ---NESD----PDTQLYAGFFGHGDKSTMDLVRATPADLLGEREFAFTDARLPEMLFRYR 413
Query: 715 ARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALL 774
ARN+ TLS E KRW+ + S +++++ Y + LE + ++NE + IL +L
Sbjct: 414 ARNWPHTLSEAEQKRWRLH-CSDYFSRRLPDY---VPRLEALAEQNQSNERNFAILKSLY 469
Query: 775 MY 776
Y
Sbjct: 470 HY 471
>gi|300703485|ref|YP_003745087.1| DNA polymerase i (pol i) [Ralstonia solanacearum CFBP2957]
gi|299071148|emb|CBJ42461.1| DNA polymerase I (POL I) [Ralstonia solanacearum CFBP2957]
Length = 960
Score = 320 bits (819), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 145/270 (53%), Positives = 201/270 (74%), Gaps = 4/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++ALPD+RN + FP GA+YG + MLRKL +Y A Y AC+FDAKGK FR+
Sbjct: 27 VDGSSYLYRAYHALPDLRNGEGFPTGAIYGIVNMLRKLRNDYPAKYSACVFDAKGKTFRD 86
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LYP+YK R MP +L QI IH+ V+A+GWPIL++ GVEADDVIGTLA++A + +
Sbjct: 87 ELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVIGTLAERAA-REGI 145
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
+ ++ST DKD+AQLV++ + L+N +N+ D + ++FGV PEKIVDY SLIGD DN+
Sbjct: 146 RTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGVQAKFGVPPEKIVDYLSLIGDTVDNV 205
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV K+GPKTAVK L++Y SL+N+I A IKGV+G+NLR L+WLPK +++LT+KTDCD
Sbjct: 206 PGVPKVGPKTAVKWLSEYGSLDNVIARAGEIKGVVGENLRNTLDWLPKGRELLTVKTDCD 265
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L+ ++ S ++L+ +D L F +Y
Sbjct: 266 LSPDVSSF-DALVDGGEDRARLADFFGRYG 294
>gi|288549827|ref|ZP_05968320.2| exodeoxyribonuclease I [Enterobacter cancerogenus ATCC 35316]
gi|288317556|gb|EFC56494.1| exodeoxyribonuclease I [Enterobacter cancerogenus ATCC 35316]
Length = 478
Score = 320 bits (819), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 162/430 (37%), Positives = 249/430 (57%), Gaps = 7/430 (1%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
+ TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A +
Sbjct: 9 DARPTFLFHDYETFGTHPALDRPAQFAAIRTDEDFNIIGEPEVFYCKPADDYLPQPGAVM 68
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
+T ITPQ + G+ E +FA I +F P T VGYN I FDDE+TR +F+RN +PY
Sbjct: 69 VTGITPQEARDKGVNEAEFARRIHALFTVPNTCVVGYNNIRFDDEVTRNIFYRNFYDPYA 128
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
W+N SRWDL+++++A + L P GITWP G SF+LEHL+ N + H AHDA++
Sbjct: 129 WSWQNRNSRWDLLDIMRACHALRPEGITWPENEEGLTSFRLEHLTRANGIEHSNAHDAMA 188
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ +A+L++ PRLF+++LS R K+ ++ I P +P +I+ MF + S
Sbjct: 189 DVYATIAMAKLVKTAQPRLFDYLLSHRSKQKLITLIDVPQMKPLVHISGMFGAWRGNTSW 248
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNR 605
+ P+ HP N+N +I +L D L D + +R+ L K++ + +P+ ++H+N+
Sbjct: 249 VAPLAWHPDNRNAVIMVDLAGDISPLLELDSDALRERLYTPKDALGDVPAVPVKLVHINK 308
Query: 606 SPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL-EL 664
P V++ L R + N+K + +N + +K+ + +
Sbjct: 309 CP-VLAQANTLRPEDADRLGINRQHCLDNLKV---LRDNPQVREKVVAIFAEAEPFVPSE 364
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARN+ TL
Sbjct: 365 NVDAQLYNGFFSDADRAAMNIVLQTEPRNLPALDITFADKRIEKLMFNYRARNYPGTLDE 424
Query: 725 KELKRWKKYR 734
E +RW ++R
Sbjct: 425 AEQERWLQHR 434
>gi|416046480|ref|ZP_11575727.1| exodeoxyribonuclease I [Aggregatibacter actinomycetemcomitans
serotype d str. I63B]
gi|347994636|gb|EGY35897.1| exodeoxyribonuclease I [Aggregatibacter actinomycetemcomitans
serotype d str. I63B]
Length = 475
Score = 320 bits (819), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 166/433 (38%), Positives = 246/433 (56%), Gaps = 7/433 (1%)
Query: 305 LLHNGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPR 364
++ + +F YDYE+FG+N +DRP QF IRTD N I PI+LYCK D+LP P
Sbjct: 1 MMAKNDFSFFIYDYESFGVNPAKDRPAQFGGIRTDADFNIIGEPIVLYCKQTNDYLPAPE 60
Query: 365 ACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLIN 424
A L+T ITPQ C G+ E +FA+ I + F +P T +G+N I +DDE+TR+ F+RN I+
Sbjct: 61 AVLVTGITPQECNEKGLSEPEFAAKILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFID 120
Query: 425 PYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHD 484
PYE WKN SRWDL+++++A Y L P GI WP + G PSF+LE L+ N ++H AHD
Sbjct: 121 PYEYSWKNGNSRWDLLDLVRACYALRPDGIEWPLDDEGMPSFRLEKLTEANGIAHDNAHD 180
Query: 485 ALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSY 544
A+SDV AT+ +A+LI+ P+LF + R KK V I P +++ M +
Sbjct: 181 AMSDVYATIEMAKLIKQKQPKLFQYFFENRGKKEVEKLIDTAEMTPLVHVSGMLGNYRGN 240
Query: 545 ISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISM 600
+L+ + HP NKN +I +L + L + ++R+ L KK + +P+ +
Sbjct: 241 TTLIASLAWHPTNKNAVIVCDLTANIDDLLTKSVEELRENLYTKKETLLAAGALPVPLKL 300
Query: 601 IHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS 660
IH+N+ PI +L N R D KN + + IF ++
Sbjct: 301 IHINKCPIFAPAKTLLPQNAE-RLGIDQELCAKNRQRLQEARDIRQKVMDIF--HQEREF 357
Query: 661 DLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIE 720
D N++ +LYN F S D +AILRS+ P+KL+ N F++ ++ EL+F YRAR+F
Sbjct: 358 DASDNVETKLYNGFFSDADKNNMAILRSLEPEKLAKHNLSFQDPRIPELLFHYRARHFYR 417
Query: 721 TLSYKELKRWKKY 733
TL+ E +W+KY
Sbjct: 418 TLNRAEQIKWQKY 430
>gi|381152874|ref|ZP_09864743.1| exonuclease I [Methylomicrobium album BG8]
gi|380884846|gb|EIC30723.1| exonuclease I [Methylomicrobium album BG8]
Length = 493
Score = 320 bits (819), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 164/475 (34%), Positives = 260/475 (54%), Gaps = 13/475 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+ + W+DYETFG + RRDRP QFA +RTD+ N I P+++Y KPA D LP P ACLIT
Sbjct: 3 DHSLYWHDYETFGTDARRDRPVQFAGVRTDLQFNPIGEPLVVYLKPADDCLPHPDACLIT 62
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G+ E +F +I + P T ++GYNT+ FDDE+TR +RN +PY RE
Sbjct: 63 GITPQLAEQKGVCEAEFIRLIHREISTPNTCALGYNTLRFDDEVTRNCLYRNFYDPYARE 122
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W++ SRWDLI+V++A L P G+ WP+ ++G P+ +L+ L+ N L H+ AHDALSDV
Sbjct: 123 WQHGNSRWDLIDVVRAARALRPDGLAWPFNDDGTPTLRLDRLTVANGLVHEAAHDALSDV 182
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
+AT+ LA+L+ P+L+ F+ R K L + P +++ + + ++++
Sbjct: 183 KATIALAQLLSRAQPKLYPFLFRHRVKAEALKLLQIGSFEPVVHVSGKYPASRHCLAVVL 242
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP N N +I +++ DP L +IR + E IP+ +HLN+
Sbjct: 243 PVAWHPSNGNGVIVYDVSIDPGPMLELSAAEIRRRIFTAAEDLPEGETRIPLKTVHLNKC 302
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNI 666
P V++ + V+ R DL +I + + +KI + N D E
Sbjct: 303 P-VLAPVSVIRGQDAERLAIDLAACRAHIAKIKAAAG---LAEKIVQVFDAEN-DFETET 357
Query: 667 DEEL---YNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
D +L F + +D K+A LRSMSP +L+ F +++L E++F YRARN+ ++L+
Sbjct: 358 DPDLAIYQGGFFTDEDKRKMAKLRSMSPGQLAETTLTFTDRRLSEMLFRYRARNYPDSLN 417
Query: 724 YKELKRWKKYRISRFYNK-KNNLYNINMFYLEIESLLKKANEHDTKILNALLMYG 777
+E RW+++ R + + ++ +E+L + D I+ AL Y
Sbjct: 418 AEETARWQQFCADRLSGRIPGAGITFDRYFARLEALRNDVSA-DRSIVAALQSYA 471
>gi|312172834|emb|CBX81090.1| exodeoxyribonuclease I [Erwinia amylovora ATCC BAA-2158]
Length = 475
Score = 319 bits (818), Expect = 6e-84, Method: Composition-based stats.
Identities = 168/473 (35%), Positives = 267/473 (56%), Gaps = 20/473 (4%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAAIRTD+ N I P + YC+PA D+LP P A +IT I
Sbjct: 9 TFLFHDYETFGKSPSLDRPAQFAAIRTDMDFNLIGEPEVFYCRPADDYLPQPEAVMITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+ E +F + I +F T VGYN + FDDE++R +F+RN +PY W+
Sbjct: 69 TPQIARQRGLSEAEFTARIHLLFSAANTCVVGYNNVRFDDEVSRNLFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
+ SRWDL++V++A Y L P GITWP ++G PSF+LEHL+ N ++H+ AHDA+SDV A
Sbjct: 129 HGNSRWDLLDVMRACYALRPDGITWPENDDGFPSFRLEHLTKANGVAHENAHDAMSDVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRL++F+ S R K+ + I P +P +I+ MF + S + P+
Sbjct: 189 TIAMAKLVKEKQPRLYDFLFSHRNKQKITTLIDIPQMKPLVHISGMFGAARGNASWIAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFK--EDIPISMIHLNRSPIV 609
HP N+N LIT +L D L D + +R L +++ +P+ ++H+N+ P+V
Sbjct: 249 AWHPDNRNALITCDLDADMAPLLELDADALRARLYTRRDELNGASPVPLKLVHINKCPVV 308
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLELN 665
+ L R D N+ + + + + +K+ + SD +
Sbjct: 309 -APANTLRPEDAERIGIDRQRCLDNL---ALLRQHPEVREKVVTLFAEAPPFTPSD---D 361
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D ++YN F S D + I+R + + L ++ F + ++E+L+F +RARNF TL K
Sbjct: 362 VDSQIYNGFFSDADRNAMNIVRQTAAENLPALDLTFNDARIEKLLFRFRARNFPGTLDDK 421
Query: 726 ELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKK--ANEHDTKILNALLMY 776
E +RW ++R F ++ + + E+E L + ++ + L AL Y
Sbjct: 422 EQQRWLQHRRQMFSPER-----VQGYVQELEMLFNQYEGDQARQEQLKALFAY 469
>gi|386332868|ref|YP_006029037.1| dna polymeraseIprotein [Ralstonia solanacearum Po82]
gi|334195316|gb|AEG68501.1| dna polymeraseIprotein [Ralstonia solanacearum Po82]
Length = 944
Score = 319 bits (818), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 145/270 (53%), Positives = 201/270 (74%), Gaps = 4/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++ALPD+RN + FP GA+YG + MLRKL +Y A Y AC+FDAKGK FR+
Sbjct: 11 VDGSSYLYRAYHALPDLRNGEGFPTGAIYGIVNMLRKLRNDYPAKYSACVFDAKGKTFRD 70
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LYP+YK R MP +L QI IH+ V+A+GWPIL++ GVEADDVIGTLA++A + +
Sbjct: 71 ELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVIGTLAERAA-REGI 129
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
+ ++ST DKD+AQLV++ + L+N +N+ D + ++FGV PEKIVDY SLIGD DN+
Sbjct: 130 RTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGVQAKFGVPPEKIVDYLSLIGDTVDNV 189
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV K+GPKTAVK L++Y SL+N+I A IKGV+G+NLR L+WLPK +++LT+KTDCD
Sbjct: 190 PGVPKVGPKTAVKWLSEYGSLDNVIARAGEIKGVVGENLRNTLDWLPKGRELLTVKTDCD 249
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L+ ++ S ++L+ +D L F +Y
Sbjct: 250 LSPDVPSF-DALVDGGEDRARLADFFGRYG 278
>gi|207743834|ref|YP_002260226.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609]
gi|206595234|emb|CAQ62161.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609]
Length = 944
Score = 319 bits (818), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 145/270 (53%), Positives = 200/270 (74%), Gaps = 4/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++ALPD+RN + FP GA+YG + MLRKL +Y A Y AC+FDAKGK FR+
Sbjct: 11 VDGSSYLYRAYHALPDLRNGEGFPTGAIYGIVNMLRKLRNDYPAKYSACVFDAKGKTFRD 70
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LYP+YK R MP +L QI IH+ V+A+GWPIL++ GVEADDVIGTLA++A + +
Sbjct: 71 ELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVIGTLAERAA-REGI 129
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
+ ++ST DKD+AQLV++ + L+N N+ D + ++FGV PEKIVDY SLIGD DN+
Sbjct: 130 RTVVSTGDKDLAQLVNDHVTLVNTMTNETLDPAGVQAKFGVPPEKIVDYLSLIGDTVDNV 189
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV K+GPKTAVK L++Y SL+N+I A IKGV+G+NLR L+WLPK +++LT+KTDCD
Sbjct: 190 PGVPKVGPKTAVKWLSEYGSLDNVIARAGEIKGVVGENLRNTLDWLPKGRELLTVKTDCD 249
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L+ ++ S ++L+ +D L F +Y
Sbjct: 250 LSPDVPSF-DALVDGGEDRARLADFFGRYG 278
>gi|148975895|ref|ZP_01812684.1| exonuclease I [Vibrionales bacterium SWAT-3]
gi|145964640|gb|EDK29893.1| exonuclease I [Vibrionales bacterium SWAT-3]
Length = 474
Score = 319 bits (818), Expect = 7e-84, Method: Composition-based stats.
Identities = 169/476 (35%), Positives = 273/476 (57%), Gaps = 18/476 (3%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
+ T+ ++DYET+G++ +DRP QFA +RTD N I P+++YC+P D+LP P A L
Sbjct: 4 DNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNIIGEPLVIYCQPPADYLPAPEAAL 63
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
IT+ITPQ ++ G+PE +F + I KP T S+GYN+I FDDE+TR+ +RN I+PY
Sbjct: 64 ITRITPQKAVSQGLPEPEFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYA 123
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
W+N SRWDL++V++A + L P GI WP G PSFKLEHLS N + H+ AHDA++
Sbjct: 124 WSWQNGNSRWDLLDVMRAVHALRPDGIVWPENEEGFPSFKLEHLSVANGIEHENAHDAMA 183
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ LA+ ++ P++F+++ ++R K+ + + P +++ MF +Y S
Sbjct: 184 DVIATIELAKKLKAAQPKMFDYLYNMRHKRKLNELVDIVNMTPLMHVSGMFGRDCNYTSW 243
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
+ P+ HP N+N +I +L DP L D +++R+ L K++ ED +PI ++ LN
Sbjct: 244 IVPMAWHPTNQNAVIVVDLAKDPSPLLELDADELRERLYTKRSDLNEDELPVPIKLVQLN 303
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY----KINNS 660
+ PI ++ K L++ D KN+ + + + I +K+ Y + S
Sbjct: 304 KCPI-LAPAKTLTAENAETIGIDRQQCLKNL---AILREHPEIREKLIGLYSQEREYEKS 359
Query: 661 DLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIE 720
D ++D +LY+ F S D + I+R P L+ ++ F +++++ L+F YRARNF
Sbjct: 360 D---DVDTQLYDGFFSPADKTAMNIIRETDPNNLAVLDITFSDERIKPLLFRYRARNFPW 416
Query: 721 TLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMY 776
TL E +W + FY + Y +N+ L E +++E IL A+ Y
Sbjct: 417 TLDESEQLKWANH-CREFYESRLEEYMLNLENLAHE---HESDEKKMAILKAVYQY 468
>gi|146312271|ref|YP_001177345.1| exonuclease I [Enterobacter sp. 638]
gi|145319147|gb|ABP61294.1| Exodeoxyribonuclease I subunit C [Enterobacter sp. 638]
Length = 476
Score = 319 bits (817), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 173/475 (36%), Positives = 261/475 (54%), Gaps = 20/475 (4%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+FL++DYETFG + DRP QFAAIRTD I P + YCKPA D+LP P A ++T I
Sbjct: 11 SFLFHDYETFGTSPSLDRPSQFAAIRTDADFTIIGEPEVFYCKPADDYLPQPGAVIVTGI 70
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+ E +FA I +F P T VGYN I FDDE+TR + +RN +PY W+
Sbjct: 71 TPQEAREKGVNEAEFARRIHALFTVPNTCVVGYNNIRFDDEVTRNVLYRNFYDPYAWSWQ 130
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++A Y L P GI WP +G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 131 NRNSRWDLLDVMRACYALRPEGINWPENEDGLPSFRLEHLTRANGIEHSNAHDAMADVYA 190
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+ ++ P+LF ++LS R K+ ++ I P +P +I+ MF + S + P+
Sbjct: 191 TIEMAKRVKTAQPKLFEYLLSHRNKQKLMTLIDVPQMKPLVHISGMFGAWRGNTSWVAPL 250
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R L K+ ED +P+ ++H+N+ P V
Sbjct: 251 AWHPDNRNAVIMVDLAGDITPLLELDSDALRARLYTPKSELGEDAAVPVKLVHINKCP-V 309
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINN----SDLELN 665
++ L R + N+K + +N + K+ + SD N
Sbjct: 310 LAQANTLRPEDAERLGINRQQCLDNLKV---LRDNPQVRDKVVAIFAEAEPFVPSD---N 363
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARN+ TL
Sbjct: 364 VDAQLYNGFFSDADRAAMNIVLQTDPRNLPALDITFADKRIEKLMFNYRARNYPGTLDES 423
Query: 726 ELKRWKKYRISRFYNKKNNLY--NINMFYLEIESLLKKANEHDTKILNALLMYGK 778
E +RW ++R + F + Y + M + + E +K N +L AL Y +
Sbjct: 424 EQERWLQHRRNVFTPEYLQCYAQELEMLFTQYEGDAEKQN-----LLKALYQYAQ 473
>gi|410631920|ref|ZP_11342591.1| exodeoxyribonuclease I [Glaciecola arctica BSs20135]
gi|410148456|dbj|GAC19458.1| exodeoxyribonuclease I [Glaciecola arctica BSs20135]
Length = 479
Score = 319 bits (817), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 165/439 (37%), Positives = 260/439 (59%), Gaps = 10/439 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
T W+DYET+G N ++D P QFA IRTD+ LN I P+M++ + A D LP P+ACL+T
Sbjct: 6 QETIYWHDYETWGANPQKDFPCQFAGIRTDLDLNIISEPLMIFSQIANDCLPVPQACLVT 65
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ L G+ E F + I K F +P T G+N I FDDEITR+ +RN +PY RE
Sbjct: 66 GITPQRSLKEGLLERDFIAKILKEFSQPNTCVAGFNNIRFDDEITRYTLYRNFYDPYARE 125
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W++ SRWD+I++ +A Y L P GI WP G PSFKL+ L+ N++ H+ AHDA+SDV
Sbjct: 126 WQHGNSRWDIIDLARACYALRPEGINWPLNEAGLPSFKLQDLTKANDIQHQDAHDAMSDV 185
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+LI+ P+LF+++ SLR K+ VL +I + P +I+ S H + +
Sbjct: 186 YATIAVAKLIKERQPKLFDYLFSLRDKRKVLEQIDYQQLTPLVHISSKIPSVHGCCTWIV 245
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSF----KEDIPISMIHLNR 605
PI +HP NKN +I NL DP ++IR L + N+ ++ +PI +IH+N+
Sbjct: 246 PIAMHPTNKNAVIVLNLALDPSPLFTLSADQIRQKL-YTPNAMLGENEQRLPIKLIHINK 304
Query: 606 SPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELN 665
P V++ K LS+ R D +N++ + L + +++++ + + L+
Sbjct: 305 CP-VLAPAKTLSAENAERLGIDRQLCLQNLQKIKANLQSLEKLQQVYIQTEQRDP---LD 360
Query: 666 IDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
+ LY+ F S D + + + L+ ++ FE+++L L+F YRARN ++LS
Sbjct: 361 AEHALYSGGFFSSNDKELMKKVTHSDLQGLTELSLPFEDERLNTLLFRYRARNAPQSLSE 420
Query: 725 KELKRWKKYRISRFYNKKN 743
E++RW++YR +FY+ ++
Sbjct: 421 TEVERWQRYRHFKFYDNES 439
>gi|83746523|ref|ZP_00943574.1| DNA polymerase I [Ralstonia solanacearum UW551]
gi|83726854|gb|EAP73981.1| DNA polymerase I [Ralstonia solanacearum UW551]
Length = 946
Score = 319 bits (817), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 145/270 (53%), Positives = 200/270 (74%), Gaps = 4/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++ALPD+RN + FP GA+YG + MLRKL +Y A Y AC+FDAKGK FR+
Sbjct: 13 VDGSSYLYRAYHALPDLRNGEGFPTGAIYGIVNMLRKLRNDYPAKYSACVFDAKGKTFRD 72
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LYP+YK R MP +L QI IH+ V+A+GWPIL++ GVEADDVIGTLA++A + +
Sbjct: 73 ELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVIGTLAERAA-REGI 131
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
+ ++ST DKD+AQLV++ + L+N N+ D + ++FGV PEKIVDY SLIGD DN+
Sbjct: 132 RTVVSTGDKDLAQLVNDHVTLVNTMTNETLDPAGVQAKFGVPPEKIVDYLSLIGDTVDNV 191
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV K+GPKTAVK L++Y SL+N+I A IKGV+G+NLR L+WLPK +++LT+KTDCD
Sbjct: 192 PGVPKVGPKTAVKWLSEYGSLDNVIARAGEIKGVVGENLRNTLDWLPKGRELLTVKTDCD 251
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L+ ++ S ++L+ +D L F +Y
Sbjct: 252 LSPDVPSF-DALVDGGEDRARLADFFGRYG 280
>gi|424800195|ref|ZP_18225737.1| Exodeoxyribonuclease I [Cronobacter sakazakii 696]
gi|423235916|emb|CCK07607.1| Exodeoxyribonuclease I [Cronobacter sakazakii 696]
Length = 475
Score = 319 bits (817), Expect = 9e-84, Method: Composition-based stats.
Identities = 172/472 (36%), Positives = 259/472 (54%), Gaps = 14/472 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAA+RTD I P + YCKPA D+LP P A LIT I
Sbjct: 9 TFLFHDYETFGKSPSLDRPAQFAALRTDENFTVIGEPDVFYCKPADDYLPQPEAVLITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G E +FA I +F P T VGYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQVARARGENEAEFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N+ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 NDNSRWDLLDVMRACYALRPEGIVWPENSDGLPSFRLEHLTVANGIEHANAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PR+F+++ + R K+ + I +P +++ MF + S + P+
Sbjct: 189 TIAMAQLVKTRQPRMFDYLYTYRSKQKLATLIDTVQMKPLVHVSGMFGAWRGNTSWIAPV 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIV 609
HP N+N +I +L D L + + +R+ L K + + +P+ ++HLN+ P V
Sbjct: 249 AWHPDNRNAVIVVDLAGDISPLLELNADDLRERLYTPKAALGDASAVPVKLVHLNKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDLELNIDE 668
++ L R D N+K +F D +D N+D
Sbjct: 308 LAQANTLRPEDAERLGIDRQHCLNNLKVLRDSPQVREKLVALFADAPPFPPTD---NVDA 364
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
+LY+ F S D + I+ P+ L ++ F +K++E+L+F YRARNF TLS +E +
Sbjct: 365 QLYDGFFSDADRAAMRIVLETPPQNLPALDITFVDKRIEKLLFNYRARNFPGTLSEQEQE 424
Query: 729 RWKKYRISRFYNKKNNLY--NINMFYLEIESLLKKANEHDTKILNALLMYGK 778
RW +R F + Y + M Y + ES ++ T +L AL Y +
Sbjct: 425 RWLAHRRDVFTPEFLQAYAQELEMLYNQYES-----DKEKTALLKALYQYAQ 471
>gi|406676979|ref|ZP_11084164.1| hypothetical protein HMPREF1170_02372 [Aeromonas veronii AMC35]
gi|404625293|gb|EKB22110.1| hypothetical protein HMPREF1170_02372 [Aeromonas veronii AMC35]
Length = 471
Score = 319 bits (817), Expect = 9e-84, Method: Composition-based stats.
Identities = 171/478 (35%), Positives = 261/478 (54%), Gaps = 27/478 (5%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
N TF ++DYETFG++ +DRP QFA IRTD N I P+++YCKP D+LPDP ACLIT
Sbjct: 6 NPTFYFHDYETFGISPAKDRPSQFAGIRTDADFNIIGEPLVIYCKPPADYLPDPEACLIT 65
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ + +G+ E F I + F P T +GYN+I FDDE+TR+ +RN +PY
Sbjct: 66 GITPQKAMKDGLCEADFIRQIHEQFATPNTCVLGYNSIRFDDEVTRYTLYRNFYDPYAYS 125
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+N SRWD++++++A Y L P GI W + + GKPSF+LE L+ N ++H AHDALSDV
Sbjct: 126 WQNGNSRWDILDMLRACYALRPEGIEWAFDDEGKPSFRLEKLTVANGVAHANAHDALSDV 185
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+L++ P+LF ++ LR K V A I +P +++ MFS S +
Sbjct: 186 LATIEMAKLVKKAQPKLFGYLFDLRNKNKVKALIDVVTMKPLVHVSGMFSPWQGCASWVS 245
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSP 607
P+ HP N+N +I +L DP + +IR+ L KK + IP+ ++H+N+ P
Sbjct: 246 PLAWHPTNQNAVIMVDLTRDPTPLIELTSEEIRERLYTKKEELGDLAGIPVKLVHINKCP 305
Query: 608 IVISNLKVLSSNL--------MFRYKFDLNCAFKNIKCA-SSILNNTYIWKKIFLDYKIN 658
++ + + R DL A ++ + N + N
Sbjct: 306 VLAPAATLTAERADELGINREQCRKSLDLLRAHPEVREKLVEVFNQEFAGS--------N 357
Query: 659 NSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNF 718
+SD D +LY F D + ++R+ L F F + +L E++F YRARN+
Sbjct: 358 DSD----PDTQLYAGFFGHGDKSTMDLVRATPADLLGEREFAFTDSRLPEMLFRYRARNW 413
Query: 719 IETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMY 776
TLS E KRW+ + S +++++ Y + LE + ++NE + IL +L Y
Sbjct: 414 PHTLSEAEQKRWRLH-CSDYFSRRLPDY---VPRLEALAEQNQSNERNFAILKSLYHY 467
>gi|170682338|ref|YP_001743128.1| exonuclease I [Escherichia coli SMS-3-5]
gi|301019172|ref|ZP_07183372.1| exonuclease [Escherichia coli MS 69-1]
gi|419920831|ref|ZP_14438936.1| exonuclease I [Escherichia coli KD2]
gi|170520056|gb|ACB18234.1| exodeoxyribonuclease I [Escherichia coli SMS-3-5]
gi|300399365|gb|EFJ82903.1| exonuclease [Escherichia coli MS 69-1]
gi|388383691|gb|EIL45441.1| exonuclease I [Escherichia coli KD2]
Length = 475
Score = 318 bits (816), Expect = 1e-83, Method: Composition-based stats.
Identities = 166/434 (38%), Positives = 247/434 (56%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R N+K + N + K+ + SD
Sbjct: 308 VLAQANTLRPEDAERLGIARQHCLDNLKV---LRENPQVRDKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDD 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 NEQQRWLEHRRQVF 435
>gi|294635527|ref|ZP_06714007.1| exodeoxyribonuclease I [Edwardsiella tarda ATCC 23685]
gi|451964338|ref|ZP_21917604.1| exodeoxyribonuclease I [Edwardsiella tarda NBRC 105688]
gi|291091096|gb|EFE23657.1| exodeoxyribonuclease I [Edwardsiella tarda ATCC 23685]
gi|451316861|dbj|GAC62966.1| exodeoxyribonuclease I [Edwardsiella tarda NBRC 105688]
Length = 473
Score = 318 bits (816), Expect = 1e-83, Method: Composition-based stats.
Identities = 163/430 (37%), Positives = 244/430 (56%), Gaps = 15/430 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+FL++DYETFG + DRP QFA +RTD N I+ P + YC+PA D+LP P A +IT I
Sbjct: 7 SFLFHDYETFGQHPALDRPAQFAGVRTDADFNIIEEPQVFYCRPADDYLPQPEAVMITGI 66
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L GI E +FA I ++F PGT VGYN I FDDE++R +F+RN +PY W+
Sbjct: 67 TPQTALAQGICEAEFAERIHQLFSVPGTCVVGYNNIRFDDEVSRNLFYRNFFDPYAYSWQ 126
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++ Y L P GI WP G PSFKLEHLS N + H AHDA++DV A
Sbjct: 127 NGNSRWDLLDVLRTCYALRPQGIVWPENEQGLPSFKLEHLSQANGIEHSNAHDAMADVYA 186
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+ + PRLF+++ LR K V I P +++ MF + SL+ P+
Sbjct: 187 TIEMAKRAKQAQPRLFDYLFQLRNKNRVAQLIDIAEMTPLVHVSGMFGALRGNTSLVAPL 246
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIV 609
HP NKN +I +L D L D +R+ L ++ + +PI ++H+N+ P++
Sbjct: 247 AWHPDNKNAVIVCDLAGDITPLLTLDSETLRERLYTPRSELGDAAPVPIKLVHINKCPVL 306
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKI---FLDYK--INNSDLEL 664
+L+ N R D N+ + + ++ + K+ F D SD
Sbjct: 307 APEKTLLAENAE-RLGLDRQRCLDNL---AQLRHHHAVRDKVVSLFADAPPFPRASD--- 359
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
+D +LY+ F S D + I+R+ P+ L ++ F ++++ L+F YRARN+ TL
Sbjct: 360 -VDSQLYDGFFSDADRQAMQIIRATQPQNLPALDLRFNDERITPLLFRYRARNYPATLDE 418
Query: 725 KELKRWKKYR 734
E +RW+++R
Sbjct: 419 AERQRWQQHR 428
>gi|260914022|ref|ZP_05920495.1| exodeoxyribonuclease I [Pasteurella dagmatis ATCC 43325]
gi|260631655|gb|EEX49833.1| exodeoxyribonuclease I [Pasteurella dagmatis ATCC 43325]
Length = 476
Score = 318 bits (816), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 179/476 (37%), Positives = 260/476 (54%), Gaps = 19/476 (3%)
Query: 309 GNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLI 368
G+ +F YDYE+FG+N DRP QFA IRTDI N I P+MLYCK D+LP P A L+
Sbjct: 5 GDFSFFIYDYESFGVNPASDRPAQFAGIRTDIDFNIIGEPVMLYCKQTNDYLPSPEAVLV 64
Query: 369 TKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYER 428
T ITPQ C GI E +FA I + F +P T +G+N I +DDE+TR+ F+RN I+PYE
Sbjct: 65 TGITPQECNEKGISEPEFAERILQEFSQPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEY 124
Query: 429 EWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSD 488
WKN SRWDL+++++A Y L P GI W + NG PSF+LE L+ VN + H AHDA++D
Sbjct: 125 SWKNGNSRWDLLDLVRACYALRPEGINWAHDENGMPSFRLEKLTQVNGIEHSNAHDAMAD 184
Query: 489 VRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLM 548
V AT+ +A+LI+ P+LF F R KK + I P +++ M + + +
Sbjct: 185 VYATIAMAKLIKEKQPKLFQFFFENRGKKEIENLIDVANMTPLVHVSGMLGNYRGNTAWV 244
Query: 549 WPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLN 604
P+ HP+N+N +I +L + L ++R L K E +P+ ++H+N
Sbjct: 245 VPLAWHPINQNAVIVCDLSANLDDLLTKSAAELRQNLYTPKAELLEKGILPVPLKLVHIN 304
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL-- 662
+ PI ++ KVL R D +N++ L N+ + I D N +
Sbjct: 305 KCPI-LAPAKVLLPENALRLGIDREFCLQNLQ----RLKNSANIRDIVTDIFTNEDKVFE 359
Query: 663 -ELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
LN++ ELY+ F D +AILR++ KL+ F++K++ EL+F YRAR+ T
Sbjct: 360 PSLNVETELYSGFFDFSDKNNMAILRNLPVDKLAEHGLAFKDKRIPELLFHYRARHHFST 419
Query: 722 LSYKELKRWKKYRISR-------FYNKKNNLYNINMFYLEIESLLKKANEHDTKIL 770
L+ E +W+KYR + F L N E LLKK E+ K+L
Sbjct: 420 LTRAEQIKWQKYRHKKLEQSAVEFEQNLQRLIEENHNNPEKLELLKKVYEYGAKLL 475
>gi|344171961|emb|CCA84587.1| DNA polymerase I (POL I) [Ralstonia syzygii R24]
Length = 944
Score = 318 bits (816), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 144/270 (53%), Positives = 200/270 (74%), Gaps = 4/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++ALPD+RN + FP GA+YG + MLRKL +Y A Y AC+FDAKGK FR+
Sbjct: 11 VDGSSYLYRAYHALPDLRNGEGFPTGAIYGIVNMLRKLRNDYPAKYSACVFDAKGKTFRD 70
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LYP+YK R MP +L QI IH+ V+A+GWPIL++ GVEADDVIGTL ++A + +
Sbjct: 71 ELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVIGTLTERAA-REGI 129
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
+ ++ST DKD+AQLV++ + L+N +N+ D ++++FGV PEKIVDY SLIGD DN+
Sbjct: 130 RTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGVLAKFGVPPEKIVDYLSLIGDTVDNV 189
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV K+GPKTAVK L +Y SL+N+I A IKGV+G+NLR L+WLPK + +LT+KTDCD
Sbjct: 190 PGVPKVGPKTAVKWLGEYGSLDNVIARAGEIKGVVGENLRNTLDWLPKGRALLTVKTDCD 249
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L + ++ E+L+ +D L+ F++Y
Sbjct: 250 LATEVPTL-EALVDGGEDRAKLVDFFSRYG 278
>gi|238898974|ref|YP_002924656.1| exonuclease I, 3' --> 5'-specific; deoxyribophosphodiesterase
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
gi|229466734|gb|ACQ68508.1| exonuclease I, 3' --> 5'-specific; deoxyribophosphodiesterase
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
Length = 490
Score = 318 bits (816), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 165/431 (38%), Positives = 249/431 (57%), Gaps = 14/431 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
N TF YDYETFG + DRP QFA IRTD+ + +++P++LYC PA D+LPDP A +IT
Sbjct: 4 NLTFYIYDYETFGQHPGLDRPAQFAGIRTDLEFHPVEDPLVLYCSPAQDYLPDPEAVMIT 63
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ L+ G+ E +FA I ++ +P T +GYN I FDDE +R +F+RN +PY
Sbjct: 64 GITPQKALSEGVNEARFAHQIHRVLSQPNTCILGYNNIRFDDEFSRHIFYRNFYDPYAYS 123
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
WKN SRWDL+++ +A Y L P GI WP G PSFKLEHL+ N++ H +AHDALSDV
Sbjct: 124 WKNGNSRWDLLDLTRACYALRPEGIIWPKNEQGLPSFKLEHLTKANSIKHTQAHDALSDV 183
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ LA+L+++ PRLF++ + R K + I P +++ MFS + + S +
Sbjct: 184 YATMALAKLLKSAQPRLFHYFYAHRSKHKINTLIHIGDMAPLVHVSGMFSPEKGHTSWIL 243
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
PI HP N+N +I +L D L + +R+ L ++ + +P+ ++H+N+
Sbjct: 244 PIAWHPDNQNAVIVCDLAGDITPLLSLKADMLRERLYTPRDQLGSECAQVPLKLVHINKC 303
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY----KINNSDL 662
PI ++ K LS R D KN++ + IF K+N
Sbjct: 304 PI-LAPAKTLSRENAQRLGIDQQHCLKNLELLRRYPDIREKMVAIFDGQKPFPKVN---- 358
Query: 663 ELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
N+D +LY+ F + D +++ ++ P+ L + F++ +LE L F +RARN+ ETL
Sbjct: 359 --NVDAQLYDGFFNDFDRAEISTIQKTLPENLPTLKIVFQDPRLETLFFRFRARNYPETL 416
Query: 723 SYKELKRWKKY 733
S K+ +RWK +
Sbjct: 417 SEKDQQRWKAH 427
>gi|156933393|ref|YP_001437309.1| exonuclease I [Cronobacter sakazakii ATCC BAA-894]
gi|156531647|gb|ABU76473.1| hypothetical protein ESA_01206 [Cronobacter sakazakii ATCC BAA-894]
Length = 491
Score = 318 bits (816), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 172/475 (36%), Positives = 258/475 (54%), Gaps = 14/475 (2%)
Query: 309 GNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLI 368
TFL++DYETFG + DRP QFAA+RTD I P + YCKPA D+LP P A LI
Sbjct: 22 AQPTFLFHDYETFGKSPSLDRPAQFAALRTDENFTVIGEPDVFYCKPADDYLPQPEAVLI 81
Query: 369 TKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYER 428
T ITPQ G E +FA I +F P T VGYN + FDDE+TR +F+RN +PY
Sbjct: 82 TGITPQVARARGENEAEFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAW 141
Query: 429 EWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSD 488
W+N+ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++D
Sbjct: 142 SWQNDNSRWDLLDVMRACYALRPEGIVWPENSDGLPSFRLEHLTVANGIEHANAHDAMAD 201
Query: 489 VRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLM 548
V AT+ +A+L++ PR+F+++ + R K+ + I +P +++ MF + S +
Sbjct: 202 VYATIAMAQLVKTRQPRMFDYLYTYRSKQKLATLIDTVQMKPLVHVSGMFGAWRGNTSWI 261
Query: 549 WPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRS 606
P+ HP N+N +I +L D L + + +R+ L K + + +P+ ++HLN+
Sbjct: 262 APVAWHPDNRNAVIVVDLAGDISPLLELNADDLRERLYTPKAALGDASAVPVKLVHLNKC 321
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDLELN 665
P V++ L R D N+K +F D +D N
Sbjct: 322 P-VLAQANTLRPEDAERLGIDRQHCLNNLKVLRDSPQVREKLVALFADAPPFPPTD---N 377
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LY+ F S D + I+ P+ L ++ F +K++E+L+F YRARNF TLS +
Sbjct: 378 VDAQLYDGFFSDADRAAMRIVLETPPQNLPALDITFVDKRIEKLLFNYRARNFPGTLSEQ 437
Query: 726 ELKRWKKYRISRFYNKKNNLY--NINMFYLEIESLLKKANEHDTKILNALLMYGK 778
E RW +R F + Y + M Y + ES ++ T +L AL Y +
Sbjct: 438 EQARWLAHRRDVFTPEFLQAYAQELEMLYNQYES-----DKEKTALLKALYQYAQ 487
>gi|449307677|ref|YP_007440033.1| exonuclease I [Cronobacter sakazakii SP291]
gi|449097710|gb|AGE85744.1| exonuclease I [Cronobacter sakazakii SP291]
Length = 475
Score = 318 bits (815), Expect = 1e-83, Method: Composition-based stats.
Identities = 172/472 (36%), Positives = 258/472 (54%), Gaps = 14/472 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAA+RTD I P + YCKPA D+LP P A LIT I
Sbjct: 9 TFLFHDYETFGKSPSLDRPAQFAALRTDENFTVIGEPDVFYCKPADDYLPQPEAVLITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G E +FA I +F P T VGYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQVARARGENEAEFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N+ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 NDNSRWDLLDVMRACYALRPEGIVWPENSDGLPSFRLEHLTVANGIEHANAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PR+F+++ + R K+ + I +P +++ MF + S + P+
Sbjct: 189 TIAMAQLVKTRQPRMFDYLYTYRSKQKLATLIDTVQMKPLVHVSGMFGAWRGNTSWIAPV 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIV 609
HP N+N +I +L D L + + +R+ L K + + +P+ ++HLN+ P V
Sbjct: 249 AWHPDNRNAVIVVDLAGDISPLLELNADDLRERLYTPKAALGDASAVPVKLVHLNKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDLELNIDE 668
++ L R D N+K +F D +D N+D
Sbjct: 308 LAQANTLRPEDAERLGIDRQHCLNNLKVLRDSPQVREKLVALFADAPPFPPTD---NVDA 364
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
+LY+ F S D + I+ P+ L ++ F +K++E+L+F YRARNF TLS +E
Sbjct: 365 QLYDGFFSDADRAAMRIVLETPPQNLPALDITFVDKRIEKLLFNYRARNFPGTLSEQEQA 424
Query: 729 RWKKYRISRFYNKKNNLY--NINMFYLEIESLLKKANEHDTKILNALLMYGK 778
RW +R F + Y + M Y + ES ++ T +L AL Y +
Sbjct: 425 RWLAHRRDVFTPEFLQAYAQELEMLYNQYES-----DKEKTALLKALYQYAQ 471
>gi|407699786|ref|YP_006824573.1| exodeoxyribonuclease I [Alteromonas macleodii str. 'Black Sea 11']
gi|407248933|gb|AFT78118.1| exodeoxyribonuclease I [Alteromonas macleodii str. 'Black Sea 11']
Length = 476
Score = 318 bits (815), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 172/474 (36%), Positives = 269/474 (56%), Gaps = 11/474 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFLW+D+ETFG + ++D P QFAA+RTD+ LN + PI + A D+LP P ACL+T I
Sbjct: 5 TFLWHDFETFGTSPQKDLPCQFAAVRTDMDLNVVGKPINIMSAIANDYLPHPEACLVTGI 64
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + +G E FA+ I + P T SVG+N+I FDDE++R++F+RN +PY REW+
Sbjct: 65 TPQQTIRDGSTEADFAARIYQEMSTPNTCSVGFNSIRFDDEVSRYLFYRNFYDPYSREWR 124
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD+I++ +A Y L P GI WP + +G PSFKLE L+ NN+ H AHDALSDV A
Sbjct: 125 NGNSRWDIIDLARACYALRPEGINWPRREDGAPSFKLEALTAANNIGHDNAHDALSDVYA 184
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+LI+ PRLF++ LSLR K V+ +I +I+ + + + P+
Sbjct: 185 TIALAKLIKEKQPRLFDYALSLRSKHTVMQQIDTSKPSVLLHISSKLPASQGCCTWVMPV 244
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSF---KEDIPISMIHLNRSPI 608
HP N N I +L H+ + + +IR L ++F E + +IH+NRSP
Sbjct: 245 AKHPTNNNAFIAVDLSHNIDSLVNDTPEEIRTALYAPSDTFDDVAERPGLKLIHVNRSPF 304
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
I+ + ++ + R + N K +S+ +F D +I +S E +ID
Sbjct: 305 -ITTARAMTEDNAERLGLNRERCLNNYKALASLPELASKLVSVF-DEEIQSS--EQDIDH 360
Query: 669 ELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY+ F++ +D + + P L+ + +++ L++ +F YRARNF TL+ E+
Sbjct: 361 ALYSGGFLNDEDRRWCESVINAQPDDLATLGDKTQHEGLKKQLFRYRARNFPNTLTADEM 420
Query: 728 KRWKKYRISRFYNKK-NNLYNINMFYLEIESLLKKANEHDTK--ILNALLMYGK 778
RW+ +R +R + + + + + +ESL + +++ K IL AL Y +
Sbjct: 421 TRWQYHRQARLTDPAFHGSITLETYMMRLESLAHEHSDNPEKQAILRALYQYAE 474
>gi|332161149|ref|YP_004297726.1| exonuclease I [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|325665379|gb|ADZ42023.1| exonuclease I [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
Length = 476
Score = 318 bits (815), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 167/477 (35%), Positives = 262/477 (54%), Gaps = 15/477 (3%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
N TF +DYETFG DRP QFA +RTD+ N I+ P+++YC PA D+LP P A +
Sbjct: 5 NKQPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQPEAVM 64
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
IT ITPQ L NG+ E +FA I + F PGT +GYN I FDDE++R +F+RN +PY
Sbjct: 65 ITGITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYA 124
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
W+ SRWDL++V++A Y L P GI WP G PSFKLEHL+ N + H AHDA+S
Sbjct: 125 YSWQGGNSRWDLLDVMRACYALRPEGIVWPENEEGLPSFKLEHLTKANGVEHLHAHDAMS 184
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ +A+ ++ PRLF+++ R K + A I P +++ MF + S
Sbjct: 185 DVYATIAMAKRVKQAQPRLFDYLYQHRSKHKINALIDIADMTPLVHVSGMFGAARGNTSW 244
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
+ P+ HP NKN +I +L D L D + +R+ L +++ +P+ ++H+N
Sbjct: 245 VAPLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLSAQDAAVPLKLVHIN 304
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF-LDYKINNSDLE 663
+ P++ +L N R D +N++ + N + +K+ L + +
Sbjct: 305 KCPVLAPAKTLLPEN-ADRLGIDRQRCLQNLQL---LRQNPQVREKVVALFAEAEPFAVS 360
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
++D +LYN F S D + I+ + L ++ F++ +LE L+F +RARN+ TL+
Sbjct: 361 DDVDAQLYNGFFSDADRATMKIILQTEAQNLPALDLTFQDPRLEALLFRFRARNYPNTLT 420
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK--ILNALLMYGK 778
E +RW ++R +K + + L++E+L + + K +L AL Y +
Sbjct: 421 DSEQQRWLEHRREALNPEK-----VQDYVLQLEALYNQYEDDKEKLALLKALFDYAR 472
>gi|292488688|ref|YP_003531575.1| exodeoxyribonuclease I [Erwinia amylovora CFBP1430]
gi|292899843|ref|YP_003539212.1| exodeoxyribonuclease I [Erwinia amylovora ATCC 49946]
gi|428785631|ref|ZP_19003122.1| exodeoxyribonuclease I [Erwinia amylovora ACW56400]
gi|291199691|emb|CBJ46811.1| exodeoxyribonuclease I [Erwinia amylovora ATCC 49946]
gi|291554122|emb|CBA21287.1| exodeoxyribonuclease I [Erwinia amylovora CFBP1430]
gi|426277193|gb|EKV54920.1| exodeoxyribonuclease I [Erwinia amylovora ACW56400]
Length = 475
Score = 318 bits (815), Expect = 2e-83, Method: Composition-based stats.
Identities = 168/473 (35%), Positives = 267/473 (56%), Gaps = 20/473 (4%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAAIRTD+ N I P + YC+PA D+LP P A +IT I
Sbjct: 9 TFLFHDYETFGKSPSLDRPAQFAAIRTDMDFNLIGEPEVFYCRPADDYLPQPEAVMITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+ E +F + I +F T VGYN + FDDE++R +F+RN +PY W+
Sbjct: 69 TPQIARQRGLSEAEFTARIHLLFSAANTCVVGYNNVRFDDEVSRNLFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
+ SRWDL++V++A Y L P GITWP ++G PSF+LEHL+ N ++H+ AHDA+SDV A
Sbjct: 129 HGNSRWDLLDVMRACYALRPDGITWPENDDGFPSFRLEHLTKANGVAHENAHDAMSDVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRL++F+ S R K+ + I P +P +I+ MF + S + P+
Sbjct: 189 TIAMAKLVKEKQPRLYDFLFSHRNKQKITTLIDIPQMKPLVHISGMFGAARGNASWIAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFK--EDIPISMIHLNRSPIV 609
HP N+N LIT +L D L D + +R L +++ +P+ ++H+N+ P V
Sbjct: 249 AWHPDNRNALITCDLDADMAPLLELDADALRARLYTRRDELNGASPVPLKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLELN 665
++ L R D N+ + + + + +K+ + SD +
Sbjct: 308 VAPANTLRPEDAERIGIDRQRCRDNL---ALLRQHPEVREKVVTLFAEAPPFTPSD---D 361
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D ++YN F S D + I+R + + L ++ F + ++E+L+F +RARNF TL K
Sbjct: 362 VDSQIYNGFFSDADRNAMNIVRQTAAENLPALDLTFNDARIEKLLFRFRARNFPGTLDDK 421
Query: 726 ELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKK--ANEHDTKILNALLMY 776
E +RW ++R F ++ + + E+E L + ++ + L AL Y
Sbjct: 422 EQQRWLQHRRQMFSPER-----VQGYVQELEMLFNQYEGDQARQEQLKALFAY 469
>gi|386741755|ref|YP_006214934.1| exonuclease I [Providencia stuartii MRSN 2154]
gi|384478448|gb|AFH92243.1| exonuclease I [Providencia stuartii MRSN 2154]
Length = 475
Score = 318 bits (814), Expect = 2e-83, Method: Composition-based stats.
Identities = 174/472 (36%), Positives = 265/472 (56%), Gaps = 16/472 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF +DYETFG + DRP QFA +RTD+ N ID P + YC P D+LP P A +IT I
Sbjct: 9 TFFVHDYETFGKHPALDRPAQFAGVRTDLDFNIIDEPEVFYCAPTDDYLPQPEAVMITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L G+ E +FA I + F +P T +GYN I FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQLALAQGVNEAEFAKRIHQQFSQPNTCIMGYNNIRFDDEVTRNIFYRNFYDPYAYSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
SRWDL++ ++A + L P GI WP + G PS +LEHL+ N ++H+ AHDA+SDV A
Sbjct: 129 QGNSRWDLLDTVRACFALRPEGIIWPENDEGLPSMRLEHLTKANGIAHENAHDAMSDVLA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PR+FN+ LR K V I P +++ MF + SYISL+ P+
Sbjct: 189 TINMAKLLKAAQPRMFNYFYQLRNKNKVSQLIDIVDMTPLVHVSGMFGALRSYISLVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N +I +L D + + +R+ L K + +PI ++H+N+ PI+
Sbjct: 249 AWHPDNRNAVIMCDLAADISPLVDLPVETLRERLYTPKTELDGELPVPIKLVHINKCPIL 308
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK-INNSDLELNIDE 668
K L + R D + +N++ + + +IF + D ++D
Sbjct: 309 APE-KTLRTEDAERTGVDRDLCLRNLEILRKHPDIRHKVIEIFAQAQPFEEPD---DVDA 364
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
++Y+ F S D + I+R K L ++ FE+ +++EL F Y+ARN+ TLSY E +
Sbjct: 365 QIYSGFFSSSDRSTMDIIRETPEKNLPALDLTFEDPRMKELFFRYKARNYPSTLSYDEQQ 424
Query: 729 RWKKYRISRFYNKKNNLYNINMFYLE-IESLL--KKANEHDTKILNALLMYG 777
RW ++R R Y ++ L M Y++ IESL+ + + K L AL+ Y
Sbjct: 425 RWLQHR--RDYFTESRL----MEYMQSIESLMIEHQNDVERCKQLKALVNYA 470
>gi|240949271|ref|ZP_04753615.1| exonuclease I [Actinobacillus minor NM305]
gi|240296387|gb|EER47031.1| exonuclease I [Actinobacillus minor NM305]
Length = 514
Score = 318 bits (814), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 166/450 (36%), Positives = 252/450 (56%), Gaps = 16/450 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF +YDYE+FG+N DRP QFA IRTD N I P+M YCK D+LP P A ++T I
Sbjct: 6 TFFFYDYESFGVNPAVDRPAQFAGIRTDDQFNIIGEPVMFYCKQTSDYLPSPEAVMVTGI 65
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
PQ C G+ E +FA+ I F +P T +GYN I +DDE+TR+ F+RN +PYE WK
Sbjct: 66 LPQQCNAEGLSEPEFAARIHAEFSQPNTCVIGYNNIRYDDEMTRYTFFRNFFDPYEYSWK 125
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++A Y L P GI W G P+FKLE+L+ N ++H+ AHDA+SDV A
Sbjct: 126 NGNSRWDLLDVVRACYALRPEGIDWVKDEEGIPNFKLENLTKANGIAHENAHDAMSDVYA 185
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF F R KK + I P +++ M + + + P+
Sbjct: 186 TISMAKLIKEKQPKLFQFFFEHRGKKEIEKLIDTAEMTPLVHVSGMLGNYRGNTAWVVPL 245
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L D + L +++ L K+ E +P+ ++H+N+ PI
Sbjct: 246 AWHPTNQNAVIVCDLSGDIQGLLNESSEVLKNRLYTKRTELSEQEKPVPLKLVHINKCPI 305
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKC--ASSILNNTYIWKKIFLDYKINNSDLELNI 666
++ KVL R D +N+K A L + + D SD N+
Sbjct: 306 -LAPAKVLLPENAARLGIDREQCLENLKALKAQKSLVREKVIEIFTEDRTFAPSD---NV 361
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
+ LY+ F S+ D ++ILRS++P++L++ F + ++E+L+F YRAR++ ETL+ E
Sbjct: 362 ETSLYDGFFSQADKNNMSILRSLAPEELAHHGLQFADLRVEKLLFHYRARHYPETLTRAE 421
Query: 727 LKRWKKY-------RISRFYNKKNNLYNIN 749
+W+KY R +F L+ I+
Sbjct: 422 QIKWQKYCHQQLDLRAEQFAQSIETLFQIH 451
>gi|357417363|ref|YP_004930383.1| exonuclease I [Pseudoxanthomonas spadix BD-a59]
gi|355334941|gb|AER56342.1| exonuclease I [Pseudoxanthomonas spadix BD-a59]
Length = 480
Score = 318 bits (814), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 165/478 (34%), Positives = 269/478 (56%), Gaps = 16/478 (3%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
++FL+YD ETFG + R R QFAA RTD LN +++P+ Y KPA D LP P A LIT
Sbjct: 3 ASFLFYDLETFGQDPHRTRIAQFAAQRTDQALNPVEDPVSFYVKPADDLLPSPVATLITG 62
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ L+ G+PE + I + +P T ++G+NT+ FDDE R +RN +PYEREW
Sbjct: 63 ITPQQALSQGVPECDAMARIFEEMARPETCTLGWNTLRFDDEFIRHGLFRNFFDPYEREW 122
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDL++V + F+ L P G+ WP + +G PSF+LEHL+ N++ AH+ALSDVR
Sbjct: 123 RGGNSRWDLLDVARLFHALRPQGMQWPRREDGTPSFRLEHLALANDVRIGDAHEALSDVR 182
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+G+AR +R+ PRL+++ L LR K++ + + P +++ + + + + P
Sbjct: 183 ATVGIARAMRSAQPRLWDYALQLRNKRFAASLLDTVAMTPLLHVSTRYPASRLCAAPVLP 242
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLN-DINKIRDYLCFKKNSFKEDI---PISMIHLNRS 606
I HP + +I +L D + LL+ D I D L + +D+ P+ +HLNR
Sbjct: 243 IARHPRIDSRIIVLDLEGDAAQALLDLDPQDIADRLYTPRADLPQDVRRVPLKEVHLNRC 302
Query: 607 PIVISNLKVLSSNLMFRYKFD-LNCAFKNIKCASSIL--NNTYIWKKIFLDYKINNSDLE 663
P ++ N + + F+ L ++ + +L + + +K+ + +
Sbjct: 303 PALVP------WNYLRQADFERLGIDPDPVQAQAGLLRAHGPLVAEKVRQVFASERAQEP 356
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
+ D LY+ F+++ D +LA +R+ P++L + F F++ +LE L+F YRARN+ +TL
Sbjct: 357 SDPDAALYDGFLAEGDRRRLAEVRATPPQQLGSRAFGFKDPRLEVLLFRYRARNWPDTLD 416
Query: 724 YKELKRWKKYRISRF-YNKKNNLYNINMFYLEIESLLKKANEHDTK--ILNALLMYGK 778
E RW +R R + + Y+++ F+ EI SL E + +L+ L +G+
Sbjct: 417 AMERGRWDDHRRQRLAAGTRTSEYSLDSFFEEIASLRAAHAEDGARQVLLDQLEAWGR 474
>gi|444377787|ref|ZP_21176995.1| Exodeoxyribonuclease I [Enterovibrio sp. AK16]
gi|443678158|gb|ELT84831.1| Exodeoxyribonuclease I [Enterovibrio sp. AK16]
Length = 474
Score = 318 bits (814), Expect = 2e-83, Method: Composition-based stats.
Identities = 170/471 (36%), Positives = 258/471 (54%), Gaps = 16/471 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYETFG + DRP QFA +RTD N I P+++YC+P D+LP P ACLIT I
Sbjct: 8 TFFFFDYETFGTSPALDRPCQFAGVRTDKDFNIIGEPLVIYCQPPNDYLPQPEACLITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G+PE +F + I + GT +VGYN I FDDE+TR+ +RN +PY W+
Sbjct: 68 TPQTAVTRGLPEPEFIAKIHEQLSVAGTCAVGYNNIRFDDEVTRYTLYRNFFDPYGWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++ ++A Y L P GI WP + G SFKLEHLS N + H AHDA++DV A
Sbjct: 128 NGNSRWDLLDTMRAAYALRPEGIEWPENSEGNISFKLEHLSVANGIEHSNAHDAMADVHA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+ ++ + PRLF+++ + R K + I +P +++ MF ++ S + P+
Sbjct: 188 TIEMAKKLKTSQPRLFDYLYTYRNKNKLTPLIDVVSMKPLVHVSGMFGTERGNTSWVVPV 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN +I +L DP D + +R+ L K D PI +IH+N+ P
Sbjct: 248 AWHPENKNAVIAVDLARDPSPLFDLDTDALRERLYTKHTDLAPDELPAPIKLIHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
V++ K L R D +N+K + N + K + L + N+D
Sbjct: 307 VLAEAKTLRPEDAARLGIDRQQCLENLKKLQA--NPSVREKLVALYAEKPEYQSSGNVDA 364
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
LY+ F S D + I+R P+ L+ ++ +++++ L+F YRARN+ TLS E K
Sbjct: 365 ALYDGFFSPSDRSTMDIIRQTKPENLAALDIQVSDQRIKPLLFRYRARNYPATLSDSEQK 424
Query: 729 RWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDT---KILNALLMY 776
+W +R ++ + Y N+ L +AN+ D KIL ++ Y
Sbjct: 425 KWHMHR-RDYFEAELPAYMANL------EALAEANQSDDKKFKILKSVYHY 468
>gi|389794799|ref|ZP_10197944.1| exonuclease I [Rhodanobacter fulvus Jip2]
gi|388431775|gb|EIL88821.1| exonuclease I [Rhodanobacter fulvus Jip2]
Length = 482
Score = 318 bits (814), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 171/477 (35%), Positives = 256/477 (53%), Gaps = 15/477 (3%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
TF W+DYETFG + RRDRP QFA IRT + L I P+M Y KP + P P ACLIT
Sbjct: 2 QTFFWHDYETFGADPRRDRPVQFAGIRTTLELEIIGEPVMFYGKPPREMPPHPDACLITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G+ E +FA+ + + PGT VGYN++ FDDEITR M +RN PY REW
Sbjct: 62 ITPQLAEREGVIEAEFAARVHEQLALPGTCGVGYNSLRFDDEITRQMLYRNFYEPYGREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+N SRWDLI++++ L P GI WP + +G PSFKLEHL+ N L ++AHDALSDV
Sbjct: 122 ENGNSRWDLIDLVRLCQALRPEGIVWPTREDGSPSFKLEHLAQANQLKQERAHDALSDVY 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
A + LARLIR PRL+++ +LR+K+ V + P +++ + + ++L+ P
Sbjct: 182 ALIDLARLIRVRQPRLWDWYYALRRKQKVFELLDVVNRTPMVHVSSRYPASRHCLALIVP 241
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP +I ++L DP ++L D + I D + + E IP+ I N +P
Sbjct: 242 LAAHPARPGEIIVYDLATDPAEWLALDEDDIADRIFTARADLPEGIERIPLRTIRANHAP 301
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
++ L VL M R + D++ + ++ +++F S L D
Sbjct: 302 -ALAPLSVLQGVDMTRLQLDVDRCLAHRDVLHAVDGLAEKLRRVFQ----RASALPPPED 356
Query: 668 EELY---NNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
EL F+ D LA +R+ P++L F F + + EL+F YRARN+ +TL
Sbjct: 357 PELALYGGGFLPDADKRLLAQVRATPPEQLGERAFPFRDARYPELLFRYRARNWPDTLDA 416
Query: 725 KELKRWKKY---RISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGK 778
E +RW+++ R++R + L + F E A + +++ L +G+
Sbjct: 417 DERERWRQFCHDRLTR-HTALTGLTLDDYFARLAELRADPATQGKLALIDQLQAWGE 472
>gi|134093551|ref|YP_001098626.1| DNA polymerase I [Herminiimonas arsenicoxydans]
Length = 911
Score = 318 bits (814), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 143/269 (53%), Positives = 201/269 (74%), Gaps = 4/269 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNY-RATYIACIFDAKGKNFR 837
+DGSS +YRAF+A+PD+R + P GA+YG I MLR+L K+Y A Y+AC+FDAKGK FR
Sbjct: 8 VDGSSYLYRAFHAMPDLRGPEGAPTGAIYGMINMLRRLRKDYPDAEYMACVFDAKGKTFR 67
Query: 838 NILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHN 897
+ LY YKA R MP +L+ QI IH+ V+A+GWPIL++ G+EADDVI TLA AV H
Sbjct: 68 DDLYAEYKAQRASMPDDLVRQIEPIHEAVRAMGWPILMVDGIEADDVIATLAVAAV-GHG 126
Query: 898 LKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDN 955
+ +IST DKD+AQLV+ + L+N + +I DR ++++FGV PE+IVDY +L+GD DN
Sbjct: 127 INTVISTGDKDLAQLVNEHVTLVNTMSGEILDRDGVLAKFGVPPERIVDYLTLVGDTVDN 186
Query: 956 LPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDC 1015
+PGV+K+GPKTAVK L QY +L+ I+ +A IKGV+G+NLR AL+WLP+ K ++T+KTDC
Sbjct: 187 VPGVEKVGPKTAVKWLTQYGTLDGIVAHAAEIKGVVGENLRRALDWLPQAKVLITVKTDC 246
Query: 1016 DLTKNIVSIPESLILQPKDEKLLMQLFNK 1044
DL+ ++ IPESL + +D + ++ F +
Sbjct: 247 DLSAHMTEIPESLTQKTEDIEAMVAFFKR 275
>gi|386309088|ref|YP_006005144.1| exodeoxyribonuclease I [Yersinia enterocolitica subsp. palearctica
Y11]
gi|418240411|ref|ZP_12866951.1| exonuclease I [Yersinia enterocolitica subsp. palearctica
PhRBD_Ye1]
gi|318605038|emb|CBY26536.1| exodeoxyribonuclease I [Yersinia enterocolitica subsp. palearctica
Y11]
gi|351780263|gb|EHB22344.1| exonuclease I [Yersinia enterocolitica subsp. palearctica
PhRBD_Ye1]
Length = 476
Score = 317 bits (813), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 167/477 (35%), Positives = 262/477 (54%), Gaps = 15/477 (3%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
N TF +DYETFG DRP QFA +RTD+ N I+ P+++YC PA D+LP P A +
Sbjct: 5 NKQPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQPEAVM 64
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
IT ITPQ L NG+ E +FA I + F PGT +GYN I FDDE++R +F+RN +PY
Sbjct: 65 ITGITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYA 124
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
W+ SRWDL++V++A Y L P GI WP G PSFKLEHL+ N + H AHDA+S
Sbjct: 125 YSWQGGNSRWDLLDVMRACYALRPEGIVWPENEEGLPSFKLEHLTKANGVEHLHAHDAMS 184
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ +A+ ++ PRLF+++ R K + A I P +++ MF + S
Sbjct: 185 DVYATIAMAKRVKQAQPRLFDYLYQHRSKHKINALIDITDMTPLVHVSGMFGAARGNTSW 244
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
+ P+ HP NKN +I +L D L D + +R+ L +++ +P+ ++H+N
Sbjct: 245 VAPLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLSAQDAAVPLKLVHIN 304
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF-LDYKINNSDLE 663
+ P++ +L N R D +N++ + N + +K+ L + +
Sbjct: 305 KCPVLAPAKTLLPEN-ADRLGIDRQRCLQNLQL---LRQNPQVREKVVALFAEAEPFAVS 360
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
++D +LYN F S D + I+ + L ++ F++ +LE L+F +RARN+ TL+
Sbjct: 361 DDVDAQLYNGFFSDADRATMKIILQTEAQNLPALDLTFQDPRLEALLFRFRARNYPNTLT 420
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK--ILNALLMYGK 778
E +RW ++R +K + + L++E+L + + K +L AL Y +
Sbjct: 421 DSEQQRWLEHRREALNPEK-----VQDYVLQLEALYNQYEDDKEKLALLKALFDYAR 472
>gi|418868304|ref|ZP_13422747.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 4176]
gi|392838210|gb|EJA93774.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 4176]
Length = 476
Score = 317 bits (813), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 167/431 (38%), Positives = 247/431 (57%), Gaps = 13/431 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
STFL++DYETFG + DRP QFAA+RTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G E FA I +F+ P T VGYN + FDDE+TR +F+RN +PY
Sbjct: 69 GITPQEAREKGENEAAFARRIHALFIVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADV 188
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+L++ PRLF+++ S R K + A I P +P +++ MF + S +
Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSP 607
P+ HP N+N +I +L D L D + +R+ L K + +P+ ++H+N+ P
Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHVAVPVKLVHINKCP 308
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYK-INNSDLE 663
V++ L R + N+K + N + K IF + + SD
Sbjct: 309 -VLAQANTLRPEDADRLGINRQHCLDNLKV---LRENPQVRDKVVAIFAEAEPFAASD-- 362
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
N+D +LY+ F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL
Sbjct: 363 -NVDAQLYDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 421
Query: 724 YKELKRWKKYR 734
E +RW ++R
Sbjct: 422 DAEQQRWLEHR 432
>gi|424816731|ref|ZP_18241882.1| exonuclease I [Escherichia fergusonii ECD227]
gi|325497751|gb|EGC95610.1| exonuclease I [Escherichia fergusonii ECD227]
Length = 475
Score = 317 bits (813), Expect = 2e-83, Method: Composition-based stats.
Identities = 166/434 (38%), Positives = 245/434 (56%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
+TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 ATFLFHDYETFGTHPALDRPAQFAAIRTDSNFNIIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGIIWPENEEGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K + A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAQLVKARQPRLFDYLYTHRNKHKLTALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R D N+K + N + K+ + SD
Sbjct: 308 VLAQANTLRPEDAERLGIDRQHCLDNLKV---LRENPQVRDKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDD 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 NEQQRWLEHRRQVF 435
>gi|375265284|ref|YP_005022727.1| exonuclease I [Vibrio sp. EJY3]
gi|369840605|gb|AEX21749.1| exonuclease I [Vibrio sp. EJY3]
Length = 473
Score = 317 bits (813), Expect = 2e-83, Method: Composition-based stats.
Identities = 161/461 (34%), Positives = 264/461 (57%), Gaps = 13/461 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYET+G N +DRP QFA +RTD N I P+++YC+P D+LP P A LIT I
Sbjct: 8 TFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G+PE +F + I KP T S+GYN+I FDDE+TR+ +RN I+PY W+
Sbjct: 68 TPQKAVQEGLPEPEFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++A + L P G+ WP G PSFKLEHLS N + H AHDA++DV A
Sbjct: 128 NGNSRWDLLDVLRACHALRPEGVEWPENEEGFPSFKLEHLSVANGIEHSNAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+ ++ P+LF++ S+R+K+ + + P +++ M + Y S + P+
Sbjct: 188 TIEMAKKVKAAQPKLFDYFFSMRQKRKLNELVDIVNMTPLMHVSGMLGRECQYTSWIVPV 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIV 609
HP N N +IT +L DP+ L ++ + L K+ + +P+ ++HLN+ PI
Sbjct: 248 AWHPTNNNTVITIDLAKDPQPILELSAEELHERLYTKREDLGDLLPVPVKLVHLNKCPI- 306
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNIDE 668
++ K L++ D N+ + + + I +K+ + + + + ++D
Sbjct: 307 LAPAKTLTAENAESIGIDRQQCLNNL---ALLRQHPEIREKLISLFSVERTFEKSDDVDT 363
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
+LY+ F S D + I+R P L+ ++ F++K+++ L+F YRARNF TL +E +
Sbjct: 364 QLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARNFPGTLDEQEQR 423
Query: 729 RWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI 769
RW ++ F ++ I + L +E+L+ + + KI
Sbjct: 424 RWAQHCREVFESQ------IEEYMLNLENLVHEHESDEKKI 458
>gi|387867230|ref|YP_005698699.1| Exodeoxyribonuclease I [Edwardsiella tarda FL6-60]
gi|304558543|gb|ADM41207.1| Exodeoxyribonuclease I [Edwardsiella tarda FL6-60]
Length = 475
Score = 317 bits (813), Expect = 2e-83, Method: Composition-based stats.
Identities = 173/476 (36%), Positives = 260/476 (54%), Gaps = 20/476 (4%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
+TFL++DYETFG + RDRP QFA +RTD N I+ P + YC+ A D+LP P A +IT
Sbjct: 8 NTFLFHDYETFGQHPARDRPAQFAGVRTDADFNIIEEPQVFYCRLADDYLPQPDAVMITG 67
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ L G E +FA I ++F PGT VGYN I FDDE++R +F+RN +PY W
Sbjct: 68 ITPQTALAQGGCEAEFAERIHQMFSVPGTCVVGYNNIRFDDEVSRNLFYRNFFDPYAYSW 127
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+N SRWDL++V++ Y L GI WP G PSFKLEHLS N + H AHDA++DV
Sbjct: 128 QNGNSRWDLLDVVRTCYALRHEGIVWPENEQGLPSFKLEHLSQANGIEHSNAHDAMADVY 187
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ LA+ ++ PRLF+++ LR K V I P +++ MF + SL+ P
Sbjct: 188 ATIALAKRVKQAQPRLFDYLFQLRNKNRVAQLIDIAAMTPLVHVSGMFGALRGNTSLIAP 247
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPI 608
+ HP NKN +I +L D L D +R+ L ++ + +PI ++H+N+ P+
Sbjct: 248 LAWHPENKNAVIVCDLDSDITPLLTLDATALRERLYTPRSELGDAAPVPIKLVHINKCPV 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKI---FLDYK-INNSDLEL 664
+ +L N R D N+ + + ++ I K+ F D SD
Sbjct: 308 LAPEKTLLVDNAA-RLGLDRQRCRDNL---ALLQQHSEIRDKVVSLFADAPPFPPSD--- 360
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
++D +LY+ F S D + I+R+ P+ L ++ F + ++ L+F YRARN+ TL
Sbjct: 361 DVDSQLYDGFFSDADRQAMQIIRATQPQNLPALDLRFSDPRITPLLFRYRARNYPATLDE 420
Query: 725 KELKRWKKYRISRFYNKK--NNLYNINMFYLEIESLLKKANEHDTKILNALLMYGK 778
E +RW+++R + ++ + L + M Y E +K +L AL Y +
Sbjct: 421 NERRRWQQHRQAMLTPQRVQDYLQTLEMLYNRYEDQPQKLT-----LLRALFDYAR 471
>gi|251792518|ref|YP_003007244.1| exonuclease I [Aggregatibacter aphrophilus NJ8700]
gi|247533911|gb|ACS97157.1| exodeoxyribonuclease I [Aggregatibacter aphrophilus NJ8700]
Length = 464
Score = 317 bits (813), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 175/466 (37%), Positives = 257/466 (55%), Gaps = 22/466 (4%)
Query: 321 FGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKITPQFCLNNG 380
FG+N DRP QF IRTD N I ++LYCK D+LP P A L+T ITPQ C G
Sbjct: 6 FGVNPATDRPAQFGGIRTDANFNIIGESVVLYCKQTNDYLPAPEAVLVTGITPQECNEKG 65
Query: 381 IPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKNNCSRWDLI 440
+PE FA+ I + F +P T +G+N I +DDE+TR+ F+RN I+PYE WKN SRWDL+
Sbjct: 66 LPEPDFAARILQEFSQPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLL 125
Query: 441 NVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRATLGLARLIR 500
++++A Y L P G+ WP + G PSF+LE L+ N + H AHDA+SDV AT+ +A+LI+
Sbjct: 126 DLVRACYALRPDGVEWPLDDEGMPSFRLEKLTEANGIEHTNAHDAMSDVYATIEMAKLIK 185
Query: 501 NNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPICIHPMNKNI 560
P+LF + R KK + I P +++ M + +L+ P+ HP NKN
Sbjct: 186 QKQPKLFQYFFENRGKKEIEKLINTAEMTPLVHVSGMLGNYRGNTTLIAPLAWHPTNKNA 245
Query: 561 LITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED----IPISMIHLNRSPIVISNLKVL 616
+I +L + L ++R+ L KK + E +P+ +IH+N+ PIV +L
Sbjct: 246 VIVCDLTANIDDLLTKSAEELRENLYTKKETLLEAGVLLVPLKLIHINKCPIVAPEKTLL 305
Query: 617 SSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF----LDYKINNSDLELNIDEELYN 672
S N R D +N +L + I +K+ D + SD N++ ELYN
Sbjct: 306 SQNAE-RLGIDRELCAQN---QQRLLASKDIRQKVMDIFQQDREFEASD---NVETELYN 358
Query: 673 NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKRWKK 732
F S D +AILR++ P+KL+ N F++ ++ +L+F YRAR+F TL+ E +W+K
Sbjct: 359 GFFSDADKNNMAILRTLEPEKLAEHNLRFQDPRIPQLLFHYRARHFYRTLNRAEQIKWQK 418
Query: 733 Y-------RISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILN 771
Y I RF L N E +LL+K E+ KI++
Sbjct: 419 YCRKKLDAEILRFEQSLQELAAQNEHNEENLTLLQKVYEYGNKIIS 464
>gi|259908083|ref|YP_002648439.1| exonuclease I [Erwinia pyrifoliae Ep1/96]
gi|387870897|ref|YP_005802269.1| exodeoxyribonuclease I [Erwinia pyrifoliae DSM 12163]
gi|224963705|emb|CAX55202.1| Exodeoxyribonuclease I [Erwinia pyrifoliae Ep1/96]
gi|283477982|emb|CAY73898.1| exodeoxyribonuclease I [Erwinia pyrifoliae DSM 12163]
Length = 475
Score = 317 bits (813), Expect = 2e-83, Method: Composition-based stats.
Identities = 162/429 (37%), Positives = 250/429 (58%), Gaps = 13/429 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAAIRTD+ N I P + YC+PA D+LP P A +IT I
Sbjct: 9 TFLFHDYETFGKSPSLDRPAQFAAIRTDMDFNLIGEPEVFYCRPADDYLPQPEAVMITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+ E +F I ++F P T VGYN + FDDE++R +F+RN +PY W+
Sbjct: 69 TPQIARARGLSEAEFTCRIHQLFSVPNTCVVGYNNVRFDDEVSRNLFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
+ SRWDL++V++A Y L P GITWP ++G PSF+LEHL+ N ++H+ AHDA+SDV A
Sbjct: 129 HGNSRWDLLDVMRACYALRPDGITWPENDDGFPSFRLEHLTKANGVAHENAHDAMSDVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+ ++ PRL++F+ S R K+ + I P +P +I+ MF + S + P+
Sbjct: 189 TIAMAKRVKEKQPRLYDFLFSHRNKQKISTLIDIPQMKPLVHISGMFGAARGNTSWIAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFK--EDIPISMIHLNRSPIV 609
HP N+N LIT +L D L D + +R L ++ +P+ ++H+N+ P+V
Sbjct: 249 AWHPDNRNALITCDLDGDMAPLLELDADALRARLYTRREELDGASPVPLKLVHINKCPVV 308
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKI---FLDYK-INNSDLELN 665
+ L + R D N+ + + + + K+ F D + SD +
Sbjct: 309 -APANTLRAEDAERIGIDRQRCLDNL---ALLRQHPEVRDKVVTLFADAQPFTPSD---D 361
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LYN F S D + I+R + + L ++ F + ++E+L+F +RARNF TL
Sbjct: 362 VDAQLYNGFFSDADRNAMNIVRQTAAENLPALDLTFNDARIEKLLFRFRARNFPGTLDDM 421
Query: 726 ELKRWKKYR 734
E +RW ++R
Sbjct: 422 EQQRWLQHR 430
>gi|123442974|ref|YP_001006949.1| exonuclease I [Yersinia enterocolitica subsp. enterocolitica 8081]
gi|122089935|emb|CAL12792.1| exodeoxyribonuclease I [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 476
Score = 317 bits (813), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 167/477 (35%), Positives = 261/477 (54%), Gaps = 15/477 (3%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
N TF +DYETFG DRP QFA +RTD+ N I+ P+++YC PA D+LP P A +
Sbjct: 5 NKQPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQPEAVM 64
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
IT ITPQ L NG+ E +FA I + F PGT +GYN I FDDE++R +F+RN +PY
Sbjct: 65 ITGITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYA 124
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
W+ SRWDL++V++A Y L P GI WP G PSFKLEHL+ N + H AHDA+S
Sbjct: 125 YSWQGGNSRWDLLDVMRACYALRPEGIVWPENEEGLPSFKLEHLTKANGVEHSHAHDAMS 184
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ +A+ ++ PRLF+++ R K + A I P +++ MF + S
Sbjct: 185 DVYATIAMAKRVKQAQPRLFDYLYQHRSKHKINALIDIADMTPLVHVSGMFGAARGNTSW 244
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
+ P+ HP NKN +I +L D L D + +R+ L +++ +P+ ++H+N
Sbjct: 245 VAPLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLSAQDAAVPLKLVHIN 304
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF-LDYKINNSDLE 663
+ P++ +L N R D +N++ + N + +K+ L + +
Sbjct: 305 KCPVLAPAKTLLPEN-ADRLGIDRQRCLQNLQL---LRQNPQVREKVVALFAEAEPFAVS 360
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
++D +LYN F S D + I+ + L ++ F++ +LE L+F +RARN+ TL+
Sbjct: 361 DDVDAQLYNGFFSDADRATMKIILQTKAQNLPALDLTFQDPRLEVLLFRFRARNYPNTLT 420
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK--ILNALLMYGK 778
E +RW +R +K + + L++E+L + + K +L AL Y +
Sbjct: 421 DSEQQRWLAHRREALNPEK-----VQDYVLQLEALYNQYEDDKEKLALLKALFDYAR 472
>gi|452119738|ref|YP_007469986.1| exonuclease I [Salmonella enterica subsp. enterica serovar Javiana
str. CFSAN001992]
gi|451908742|gb|AGF80548.1| exonuclease I [Salmonella enterica subsp. enterica serovar Javiana
str. CFSAN001992]
Length = 476
Score = 317 bits (813), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 167/431 (38%), Positives = 247/431 (57%), Gaps = 13/431 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
STFL++DYETFG + DRP QFAA+RTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G E FA I +F P T VGYN + FDDE+TR +F+RN +PY
Sbjct: 69 GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADV 188
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+L++ PRLF+++ S R K ++A I P +P +++ MF + S +
Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLVALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSP 607
P+ HP N+N +I +L D L D + +R+ L K + +P+ ++H+N+ P
Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHVAVPVKLVHINKCP 308
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYK-INNSDLE 663
V++ L R + N+K + N + K IF + + SD
Sbjct: 309 -VLAQANTLRPEDADRLGINRQHCLDNLKV---LRENPQVRDKVVAIFAETEPFAASD-- 362
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
N+D +LY+ F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL
Sbjct: 363 -NVDAQLYDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 421
Query: 724 YKELKRWKKYR 734
E +RW ++R
Sbjct: 422 DAEQQRWLEHR 432
>gi|387773165|ref|ZP_10128760.1| exonuclease C-terminal domain protein [Haemophilus parahaemolyticus
HK385]
gi|386905205|gb|EIJ69976.1| exonuclease C-terminal domain protein [Haemophilus parahaemolyticus
HK385]
Length = 514
Score = 317 bits (813), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 164/432 (37%), Positives = 249/432 (57%), Gaps = 11/432 (2%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
N N TF +YDYE+FG+N DRP QFA IRTD N I P+M YCK PD+LP P A +
Sbjct: 2 NKNQTFFFYDYESFGVNPASDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPAPEAVM 61
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
+T I PQ C G+ E +F++ I F +P T +GYN I +DDE+TR+ F+RN +PYE
Sbjct: 62 VTGILPQQCNAEGLSEPEFSAKIHAEFSQPNTCVMGYNNIRYDDEMTRYTFFRNFFDPYE 121
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
+KN SRWDL++V++A Y L P GI W G P+FKLE+L+ N + H+ AHDA++
Sbjct: 122 YSYKNGNSRWDLLDVVRACYALRPDGINWVTDEEGIPNFKLENLTKANGIEHENAHDAMA 181
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ + +L++ P+LFN+ R KK V + I P +++ M + +
Sbjct: 182 DVYATIAMTKLLKEKQPKLFNYFFEHRGKKEVESLIDTGEMTPLVHVSGMLGNYRGNTAW 241
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
+ PI HP NKN +I +L D + L +D ++ L K+ + E +P+ ++H+N
Sbjct: 242 VVPIEWHPTNKNAVIVCDLSGDIQGLLNDDAEALKTRLYTKRENLAEGELPVPLKLVHIN 301
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKC---ASSILNNTYIWKKIFLDYKINNSD 661
+ PI ++ KVL R D +N+K S+L +IF D +
Sbjct: 302 KCPI-LAPAKVLLPENAARLGIDRELCLQNLKVLKQHKSLLRQKV--SEIFSDERTFAPS 358
Query: 662 LELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
N++ LY+ F S D +AILR++ P++L++ F + ++E+L+F YRAR++ ET
Sbjct: 359 --ENVETTLYDGFFSPADKNNMAILRTLKPEELAHHGLKFADPRVEQLLFHYRARHYPET 416
Query: 722 LSYKELKRWKKY 733
L+ E +W+KY
Sbjct: 417 LTRAEQVKWQKY 428
>gi|417789525|ref|ZP_12437168.1| exonuclease I [Cronobacter sakazakii E899]
gi|333956383|gb|EGL74043.1| exonuclease I [Cronobacter sakazakii E899]
Length = 475
Score = 317 bits (813), Expect = 3e-83, Method: Composition-based stats.
Identities = 172/472 (36%), Positives = 258/472 (54%), Gaps = 14/472 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAA+RTD I P + YCKPA D+LP P A LIT I
Sbjct: 9 TFLFHDYETFGKSPSLDRPAQFAALRTDENFTVIGEPDVFYCKPADDYLPQPEAVLITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G E +FA I +F P T VGYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQVARACGENEAEFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N+ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 NDNSRWDLLDVMRACYALRPEGIVWPENSDGLPSFRLEHLTVANGIEHANAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PR+F+++ + R K+ + I +P +++ MF + S + P+
Sbjct: 189 TIAMAQLVKTRQPRMFDYLYTYRSKQKLATLIDTVQMKPLVHVSGMFGAWRGNTSWIAPV 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIV 609
HP N+N +I +L D L + + +R+ L K + + +P+ ++HLN+ P V
Sbjct: 249 AWHPDNRNAVIVVDLAGDISPLLELNADDLRERLYTPKAALGDASAVPVKLVHLNKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDLELNIDE 668
++ L R D N+K +F D +D N+D
Sbjct: 308 LAQANTLRPEDAERLGIDRQHCLNNLKVLRDSPQVREKLVALFADAPPFPPTD---NVDA 364
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
+LY+ F S D + I+ P+ L ++ F +K++E+L+F YRARNF TLS +E
Sbjct: 365 QLYDGFFSDADRAAMRIVLETPPQNLPALDITFVDKRIEKLLFNYRARNFPGTLSEQEQA 424
Query: 729 RWKKYRISRFYNKKNNLY--NINMFYLEIESLLKKANEHDTKILNALLMYGK 778
RW +R F + Y + M Y + ES ++ T +L AL Y +
Sbjct: 425 RWLAHRRDVFTPEFLQAYAQELEMLYNQYES-----DKEKTALLKALYQYAQ 471
>gi|344167306|emb|CCA79516.1| DNA polymerase I (POL I) [blood disease bacterium R229]
Length = 944
Score = 317 bits (813), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 143/270 (52%), Positives = 201/270 (74%), Gaps = 4/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++ALPD+RN + FP GA+YG + MLRKL +Y A Y AC+FDAKGK FR+
Sbjct: 11 VDGSSYLYRAYHALPDLRNGEGFPTGAIYGIVNMLRKLRNDYPAKYSACVFDAKGKTFRD 70
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LYP+YK R MP +L QI IH+ V+A+GWPIL++ GVEADDVIGTL ++A + +
Sbjct: 71 ELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVIGTLTERAA-REGI 129
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
+ ++ST DKD+AQLV++ + L+N +N+ D ++++FGV PEKIVDY SLIGD DN+
Sbjct: 130 RTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGVLAKFGVPPEKIVDYLSLIGDTVDNV 189
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV K+GPKTAVK L++Y SL+N+I A IKGV+G+NLR L+WLPK +++LT+K DCD
Sbjct: 190 PGVPKVGPKTAVKWLSEYGSLDNVIARAGEIKGVVGENLRNTLDWLPKGRELLTVKIDCD 249
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L + ++ E+L+ +D L+ F++Y
Sbjct: 250 LATEVPTL-EALVDGGEDRAKLVDFFSRYG 278
>gi|429085795|ref|ZP_19148757.1| Exodeoxyribonuclease I [Cronobacter condimenti 1330]
gi|426544993|emb|CCJ74798.1| Exodeoxyribonuclease I [Cronobacter condimenti 1330]
Length = 475
Score = 317 bits (812), Expect = 3e-83, Method: Composition-based stats.
Identities = 172/472 (36%), Positives = 260/472 (55%), Gaps = 14/472 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAA+RTD + P + YCKPA D+LP P A LIT I
Sbjct: 9 TFLFHDYETFGKSPSLDRPAQFAALRTDENFTPVGEPDVFYCKPADDYLPQPEAVLITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G E +FA I F P T VGYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQVARARGENEAEFARRIHTQFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N+ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 NDNSRWDLLDVMRACYALRPEGIVWPENSDGLPSFRLEHLTVANGIEHTNAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PR+F+++ + R K+ + I +P +++ MF + S + P+
Sbjct: 189 TIAMAQLVKTRQPRMFDYLYTYRSKQKLATLIDIVQMKPLVHVSGMFGAWRGNTSWIAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R+ L K + E +P+ ++HLN+ P V
Sbjct: 249 AWHPDNRNAVIVVDLAGDISPLLELDADALRERLYTPKTALGEASAVPVKLVHLNKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF-LDYKINNSDLELNIDE 668
++ L R D N+K + ++ + +K+ L + N+D
Sbjct: 308 LAQANTLRPEDAERLGIDRQHCLNNLKV---LRDSPQVREKLVALFAEAPPFPPTSNVDA 364
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
+LY F S D + I+ P+ L ++ F +K++E+L+F YRARNF TLS E +
Sbjct: 365 QLYEGFFSDADRAAMRIVLQTPPQNLPALDITFVDKRIEKLLFNYRARNFPGTLSEPEQQ 424
Query: 729 RWKKYRISRFYNKKNNLY--NINMFYLEIESLLKKANEHDTKILNALLMYGK 778
RW +R F + Y + M Y + ES ++ T +L AL Y +
Sbjct: 425 RWLNHRRDVFTPEFLQTYAQELEMLYNQYES-----DKEKTALLKALYQYAQ 471
>gi|330829787|ref|YP_004392739.1| exodeoxyribonuclease I [Aeromonas veronii B565]
gi|423209515|ref|ZP_17196069.1| hypothetical protein HMPREF1169_01587 [Aeromonas veronii AER397]
gi|328804923|gb|AEB50122.1| Exodeoxyribonuclease I [Aeromonas veronii B565]
gi|404617373|gb|EKB14309.1| hypothetical protein HMPREF1169_01587 [Aeromonas veronii AER397]
Length = 471
Score = 317 bits (812), Expect = 3e-83, Method: Composition-based stats.
Identities = 169/474 (35%), Positives = 267/474 (56%), Gaps = 19/474 (4%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
N TF ++DYETFG++ +DRP QFA IRTD N I P+++YCKP D+LPDP ACLIT
Sbjct: 6 NPTFYFHDYETFGISPAKDRPSQFAGIRTDADFNIIGEPLVIYCKPPADYLPDPEACLIT 65
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ + +G+ E F I + F P T +GYN+I FDDE+TR+ +RN +PY
Sbjct: 66 GITPQKAMKDGLCEADFIRQIHEQFATPNTCVLGYNSIRFDDEVTRYTLYRNFYDPYAYS 125
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+N SRWD++++++A Y L P GI W + + GKPSF+LE L+ N ++H AHDALSDV
Sbjct: 126 WQNGNSRWDILDMLRACYALRPEGIEWAFDDEGKPSFRLEKLTVGNGVAHANAHDALSDV 185
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+L++ P+LF ++ LR K V A I +P +++ MFS S +
Sbjct: 186 LATIEMAKLVKKAQPKLFGYLFDLRNKNKVKALIDVVTMKPLVHVSGMFSPWQGCASWVS 245
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSP 607
P+ HP N+N +I +L DP + +IR+ L KK + IP+ ++H+N+ P
Sbjct: 246 PLAWHPTNQNAVIMVDLTRDPTPLIELTSEEIRERLYTKKEELGDLAGIPVKLVHINKCP 305
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILN-NTYIWKKIFLDYKINNSDL---- 662
++ ++ L +L + + + +L + + +K+ ++ N +
Sbjct: 306 VLAP-----AATLTAERADELGINREQCRKSLDLLRAHPEVREKLV---EVFNQEFAGSN 357
Query: 663 ELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
E + D +LY F D + ++R+ L F F + +L E++F YRARN+ TL
Sbjct: 358 ESDPDTQLYAGFFGHGDKSTMDLVRATPADLLGEREFAFTDSRLPEMLFRYRARNWPHTL 417
Query: 723 SYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMY 776
S E KRW+ + S +++++ Y + LE + ++NE + IL +L Y
Sbjct: 418 SEAEQKRWRLH-CSDYFSRRLPDY---VPRLEALAEQNQSNERNFAILKSLYHY 467
>gi|193222215|emb|CAL60497.2| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans]
Length = 917
Score = 317 bits (812), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 143/269 (53%), Positives = 201/269 (74%), Gaps = 4/269 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNY-RATYIACIFDAKGKNFR 837
+DGSS +YRAF+A+PD+R + P GA+YG I MLR+L K+Y A Y+AC+FDAKGK FR
Sbjct: 14 VDGSSYLYRAFHAMPDLRGPEGAPTGAIYGMINMLRRLRKDYPDAEYMACVFDAKGKTFR 73
Query: 838 NILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHN 897
+ LY YKA R MP +L+ QI IH+ V+A+GWPIL++ G+EADDVI TLA AV H
Sbjct: 74 DDLYAEYKAQRASMPDDLVRQIEPIHEAVRAMGWPILMVDGIEADDVIATLAVAAV-GHG 132
Query: 898 LKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDN 955
+ +IST DKD+AQLV+ + L+N + +I DR ++++FGV PE+IVDY +L+GD DN
Sbjct: 133 INTVISTGDKDLAQLVNEHVTLVNTMSGEILDRDGVLAKFGVPPERIVDYLTLVGDTVDN 192
Query: 956 LPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDC 1015
+PGV+K+GPKTAVK L QY +L+ I+ +A IKGV+G+NLR AL+WLP+ K ++T+KTDC
Sbjct: 193 VPGVEKVGPKTAVKWLTQYGTLDGIVAHAAEIKGVVGENLRRALDWLPQAKVLITVKTDC 252
Query: 1016 DLTKNIVSIPESLILQPKDEKLLMQLFNK 1044
DL+ ++ IPESL + +D + ++ F +
Sbjct: 253 DLSAHMTEIPESLTQKTEDIEAMVAFFKR 281
>gi|379701291|ref|YP_005243019.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. ST4/74]
gi|383496777|ref|YP_005397466.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
gi|323130390|gb|ADX17820.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. ST4/74]
gi|380463598|gb|AFD59001.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
Length = 476
Score = 317 bits (812), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 168/431 (38%), Positives = 246/431 (57%), Gaps = 13/431 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
STFL++DYETFG + DRP QFAA+RTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G E FA I +F P T VGYN + FDDE+TR +F+RN +PY
Sbjct: 69 GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTRANGIEHSNAHDAMADV 188
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+L++ PRLF+++ S R K + A I P +P +++ MF + S +
Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSP 607
P+ HP N+N +I +L D L D + +R+ L K + +PI ++H+N+ P
Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPIKLVHINKCP 308
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYK-INNSDLE 663
V++ L R + N+K + N + K IF + + SD
Sbjct: 309 -VLAQANTLRPEDADRLGINRQHCLDNLKV---LRENPQVRDKVVAIFAEAEPFAASD-- 362
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
N+D +LY+ F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL
Sbjct: 363 -NVDAQLYDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 421
Query: 724 YKELKRWKKYR 734
E +RW ++R
Sbjct: 422 DAEQQRWLEHR 432
>gi|422805029|ref|ZP_16853461.1| exonuclease [Escherichia fergusonii B253]
gi|324114057|gb|EGC08030.1| exonuclease [Escherichia fergusonii B253]
Length = 474
Score = 317 bits (812), Expect = 3e-83, Method: Composition-based stats.
Identities = 166/433 (38%), Positives = 244/433 (56%), Gaps = 13/433 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT I
Sbjct: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSNFNIIGEPEVFYCKPADDYLPQPGAVLITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
++ SRWDL++V++A Y L P GI WP G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 HDNSRWDLLDVMRACYALRPEGIIWPENEEGLPSFRLEHLTKANGIEHSNAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF+++ + R K + A I P +P +++ MF + S + P+
Sbjct: 189 TIAMAQLVKARQPRLFDYLYTHRNKHKLTALIDVPQMKPLVHVSGMFGAWRGNTSWVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P V
Sbjct: 249 AWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLELN 665
++ L R D N+K + N + K+ + SD N
Sbjct: 308 LAQANTLRPEDAERLGIDRQHCLDNLKV---LRENPQVRDKVVAIFAEAEPFTPSD---N 361
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL
Sbjct: 362 VDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDN 421
Query: 726 ELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 EQQRWLEHRRQVF 434
>gi|218549424|ref|YP_002383215.1| exonuclease I [Escherichia fergusonii ATCC 35469]
gi|218356965|emb|CAQ89597.1| exonuclease I [Escherichia fergusonii ATCC 35469]
Length = 474
Score = 317 bits (812), Expect = 3e-83, Method: Composition-based stats.
Identities = 166/433 (38%), Positives = 244/433 (56%), Gaps = 13/433 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT I
Sbjct: 9 TFLFHDYETFGTHPALDRPAQFAAIRTDSDFNIIGEPEVFYCKPADDYLPQPGAVLITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
++ SRWDL++V++A Y L P GI WP G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 HDNSRWDLLDVMRACYALRPEGIIWPENEEGLPSFRLEHLTKANGIEHSNAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF+++ + R K + A I P +P +++ MF + S + P+
Sbjct: 189 TIAMAQLVKARQPRLFDYLYTHRNKHKLTALIDVPQMKPLVHVSGMFGAWRGNTSWVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P V
Sbjct: 249 AWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLELN 665
++ L R D N+K + N + K+ + SD N
Sbjct: 308 LAQANTLRPEDAERLGIDRQHCLDNLKV---LRENPQVRDKVVAIFAEAEPFTPSD---N 361
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL
Sbjct: 362 VDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDN 421
Query: 726 ELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 EQQRWLEHRRQVF 434
>gi|386390488|ref|ZP_10075277.1| exonuclease C-terminal domain protein [Haemophilus
paraphrohaemolyticus HK411]
gi|385693213|gb|EIG23868.1| exonuclease C-terminal domain protein [Haemophilus
paraphrohaemolyticus HK411]
Length = 514
Score = 317 bits (812), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 173/479 (36%), Positives = 270/479 (56%), Gaps = 19/479 (3%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
N N TF +YDYE+FG+N DRP QFA IRTD N I P+M YCK PD+LP P A +
Sbjct: 2 NKNQTFFFYDYESFGVNPASDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPAPEAVM 61
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
+T I PQ C G+ E +F++ I F KP T +GYN I +DDE+TR+ F+RN +PYE
Sbjct: 62 VTGILPQQCNAEGLSEPEFSAKIHAEFSKPSTCVIGYNNIRYDDEMTRYTFFRNFFDPYE 121
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
+KN SRWDL++V++A Y L P GI W G P+FKLE+L+ N + H+ AHDA++
Sbjct: 122 YSYKNGNSRWDLLDVVRACYALRPDGINWVTDEEGIPNFKLENLTKANGIEHENAHDAMA 181
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ + +L++ P+LF++ R KK V + I P +++ M + +
Sbjct: 182 DVYATIAMTKLLKEKQPKLFDYFFEHRGKKEVESLIDTGEMTPLVHVSGMLGNYRGNTAW 241
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE---DIPISMIHLN 604
+ PI HP NKN +I +L D + L +D ++ L K+ + E +P+ ++H+N
Sbjct: 242 VVPIEWHPTNKNAVIVCDLSGDIQGLLNDDAEALKTRLYTKRENLAERELPVPLKLVHIN 301
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKC---ASSILNNTYIWKKIFLDYKINNSD 661
+ PI ++ KVL R D +N+K S+L +IF D +
Sbjct: 302 KCPI-LAPAKVLLPENAERLGIDRELCLQNLKALKQHKSLLRQKV--SEIFSDERTFAPS 358
Query: 662 LELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
N++ LY+ F S D +AILR++ P++L++ F + ++E+L+F YRAR++ ET
Sbjct: 359 --ENVEITLYDGFFSPADKNNMAILRTLKPEELAHHGLKFADPRVEQLLFHYRARHYPET 416
Query: 722 LSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK--ILNALLMYGK 778
L+ E +W+KY N++ ++ + F IE+L + ++ K +L L+ Y +
Sbjct: 417 LTRAEQVKWQKY-----CNQQIDV-KVEQFAQSIETLSQTYHDDPEKLQLLEQLMAYAE 469
>gi|33152477|ref|NP_873830.1| exonuclease I [Haemophilus ducreyi 35000HP]
gi|33148700|gb|AAP96219.1| exonuclease I [Haemophilus ducreyi 35000HP]
Length = 513
Score = 317 bits (812), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 170/468 (36%), Positives = 263/468 (56%), Gaps = 17/468 (3%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
N + TF +YDYE+FG+N DRP QFA IRTD N I P+M YCK D+LP A +
Sbjct: 2 NNDFTFFFYDYESFGINPATDRPAQFAGIRTDREFNIIGEPVMFYCKQTNDYLPSAEAVM 61
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
+T I PQ C G+ E +FA I F +P T +GYN I +DDE+TR+ F+RN +PYE
Sbjct: 62 VTGIAPQLCNEKGLSEPEFAQRIHHEFSQPNTCIIGYNNIRYDDEMTRYTFFRNFYDPYE 121
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
WKN SRWDL+++++A Y L P GI WP +PSFKLEHL+ N ++H+ AHDA++
Sbjct: 122 YCWKNGNSRWDLLDLVRACYALRPSGIEWPKNEKDEPSFKLEHLTKANAIAHQNAHDAMA 181
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ +A+LI+ +LF+F R KK + I P +++ M + +L
Sbjct: 182 DVYATIEIAKLIKQKQRKLFDFFFENRSKKALEKLIDPAELTPLVHVSGMLGNYRGNTAL 241
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
+ P+ HP N+N ++ +L D + L + ++ L K+++ E +P+ ++HLN
Sbjct: 242 IVPLAWHPTNQNAVVVCDLSSDIQGLLNDTAEVLKQRLYTKRDALAEHESPVPLKLVHLN 301
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKN---IKCASSILNNTYIWKKIFLDYKINNSD 661
+ PI+ +L+ N M R D + N ++ +++ I +IF D +I
Sbjct: 302 KCPILAPAKTLLAENAM-RLAIDRSQCLLNLAKLQAQKAVVREKVI--EIFNDERIFAPS 358
Query: 662 LELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
N++ LY++F S D LAILR++ P++L+ F +K++E L+F YRAR+F T
Sbjct: 359 --NNVETTLYDSFFSNGDKNNLAILRTLKPEQLAEHGLKFADKRVEPLLFHYRARHFPNT 416
Query: 722 LSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI 769
L+ E +W+KY + K F EI +L ++ +H K+
Sbjct: 417 LTRAEQIKWQKYCHQQIDAK------TEQFSQEIANLFERYADHADKV 458
>gi|254517159|ref|ZP_05129217.1| exodeoxyribonuclease I [gamma proteobacterium NOR5-3]
gi|219674664|gb|EED31032.1| exodeoxyribonuclease I [gamma proteobacterium NOR5-3]
Length = 482
Score = 317 bits (812), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 169/480 (35%), Positives = 271/480 (56%), Gaps = 14/480 (2%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
+ + T W+DYETFG++ DRP QFA +RTD+ LN I P++LY KP D++P P ACL
Sbjct: 2 SSSETLYWHDYETFGVDPGYDRPAQFAGLRTDLDLNPIGEPLVLYAKPPRDYVPHPDACL 61
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
IT ITPQ L G+PE F I F++ GT +VGYN++ FDD +TR +RNL +PY
Sbjct: 62 ITGITPQAALAAGVPEADFIKAILHEFMQRGTCAVGYNSLRFDDTVTRATLYRNLRDPYA 121
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
RE+ + SRWDLI++++ Y L P G+ WP +++G PSF+LE L N L+ +AHDAL
Sbjct: 122 REYGDGRSRWDLIDIVRTAYALRPEGLIWPERDDGLPSFRLEDLCEANGLAQGRAHDALV 181
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV+AT+ LARL++ PRLF ++ R K+ V + P+++P +++ MF ++ + + L
Sbjct: 182 DVQATIALARLLKERQPRLFQWLYQQRFKQAV-KPLLEPMSQPVLHVSGMFGAQRANLGL 240
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDY-LCFKKN---SFKEDIP-ISMIH 602
+ P+ H N+N ++ +L D LL D+ + L F N + E P + +H
Sbjct: 241 ILPLAAHHQNRNEVMCADLSIDAD--LLTDLPAAELHRLLFTANADLAEGEQRPGLKSVH 298
Query: 603 LNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNT--YIWKKIFLDYKINNS 660
+NR P+++ K+ + + R DL N++ + + K+ +++
Sbjct: 299 INRCPVLLPA-KMADAAVTQRADLDLEACRANLQHLRDYEQHMPGALRDKLRSVSELSTR 357
Query: 661 DLELNIDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFI 719
E + D LY+ FI K+D L + +SP+ L++ F++ +L+E++F YRARN+
Sbjct: 358 APETDPDRMLYSGGFIPKEDRRTLDRILDLSPEDLADTTVAFDDLRLQEMLFRYRARNYP 417
Query: 720 ETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKAN--EHDTKILNALLMYG 777
+TLS +E RW+++R +R + IE L E D ++L L +G
Sbjct: 418 QTLSAEEQLRWEEFRFNRISEGDGRSLTLEGLNELIEERLASPQLCERDRQVLEELQRWG 477
>gi|417951637|ref|ZP_12594733.1| exonuclease I [Vibrio splendidus ATCC 33789]
gi|342804421|gb|EGU39739.1| exonuclease I [Vibrio splendidus ATCC 33789]
Length = 474
Score = 317 bits (812), Expect = 3e-83, Method: Composition-based stats.
Identities = 168/476 (35%), Positives = 271/476 (56%), Gaps = 18/476 (3%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
+ T+ ++DYET+G++ +DRP QFA +RTD N I P+++YC+P D+LP P A L
Sbjct: 4 DNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNIIGEPLVIYCQPPADYLPAPEAAL 63
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
IT+ITPQ ++ G+PE +F + I KP T S+GYN+I FDDE+TR+ +RN I+PY
Sbjct: 64 ITRITPQKAMSQGLPEPEFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYA 123
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
W+N SRWDL++V++A + L P GI WP G PSFKLEHLS N + H+ AHDA++
Sbjct: 124 WSWQNGNSRWDLLDVMRAVHALRPDGIVWPENEEGFPSFKLEHLSVANGIEHENAHDAMA 183
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ LA+ ++ P++F+++ ++R K+ + + P +++ M +Y S
Sbjct: 184 DVIATIELAKKLKAAQPKMFDYLYNMRHKRKLNELVDIVNMTPLMHVSGMLGRDCNYTSW 243
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
+ P+ HP N+N +I +L DP L D +++R+ L K + ED +PI ++ LN
Sbjct: 244 IVPMAWHPTNQNAVIVVDLAKDPSPLLELDTDELRERLYTKHSDLNEDELPVPIKLVQLN 303
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY----KINNS 660
+ PI ++ K L++ D KN+ + + + I +K+ Y + S
Sbjct: 304 KCPI-LAPAKTLTAENAETIGIDRQQCLKNL---AILREHPEIREKLIGLYSQEREYEKS 359
Query: 661 DLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIE 720
D ++D +LY+ F S D + I+R P L+ ++ F +++++ L+F YRARNF
Sbjct: 360 D---DVDTQLYDGFFSPADKTAMNIIRETDPNNLAALDITFSDERIKPLLFRYRARNFPW 416
Query: 721 TLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMY 776
TL E +W + FY + Y +N+ L E +++E IL A+ Y
Sbjct: 417 TLDESEQLKWANH-CREFYESRLEEYMLNLENLAHE---HESDEKKMAILKAVYQY 468
>gi|16760997|ref|NP_456614.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. CT18]
gi|29141307|ref|NP_804649.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. Ty2]
gi|56413034|ref|YP_150109.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|197361958|ref|YP_002141595.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|213053400|ref|ZP_03346278.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. E00-7866]
gi|213421859|ref|ZP_03354925.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. E01-6750]
gi|213425574|ref|ZP_03358324.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. E02-1180]
gi|213648908|ref|ZP_03378961.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. J185]
gi|289829232|ref|ZP_06546844.1| exonuclease I [Salmonella enterica subsp. enterica serovar Typhi
str. E98-3139]
gi|378958956|ref|YP_005216442.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Typhi str. P-stx-12]
gi|25289114|pir||AF0763 exodeoxyribonuclease I (EC 3.1.11.1) [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16503295|emb|CAD02428.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Typhi]
gi|29136934|gb|AAO68498.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
gi|56127291|gb|AAV76797.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|197093435|emb|CAR58890.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|374352828|gb|AEZ44589.1| Exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Typhi str. P-stx-12]
Length = 476
Score = 317 bits (812), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 167/431 (38%), Positives = 246/431 (57%), Gaps = 13/431 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
STFL++DYETFG + DRP QFAA+RTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G E FA I +F P T VGYN + FDDE+TR +F+RN +PY
Sbjct: 69 GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADV 188
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+L++ PRLF+++ S R K + A I P +P +++ MF + S +
Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSP 607
P+ HP N+N +I +L D L D + +R+ L K + +P+ ++H+N+ P
Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCP 308
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYK-INNSDLE 663
V++ L R + N+K + N + K IF + + SD
Sbjct: 309 -VLAQANTLRPEDADRLGINRQHCLDNLKV---LRENPQVRDKVVAIFAEAEPFATSD-- 362
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
N+D +LY+ F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL
Sbjct: 363 -NVDAQLYDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 421
Query: 724 YKELKRWKKYR 734
E +RW ++R
Sbjct: 422 DAEQQRWLEHR 432
>gi|300690852|ref|YP_003751847.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07]
gi|299077912|emb|CBJ50551.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07]
Length = 944
Score = 317 bits (812), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 143/270 (52%), Positives = 200/270 (74%), Gaps = 4/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++ALPD+RN + FP GA+YG + MLRKL +Y A Y AC+FDAKGK FR+
Sbjct: 11 VDGSSYLYRAYHALPDLRNGEGFPTGAIYGIVNMLRKLRNDYPAKYSACVFDAKGKTFRD 70
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LYP+YK R MP +L QI IH+ V+A+GWPIL++ GVEADDVIGTL ++A + +
Sbjct: 71 ELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVIGTLTERAA-REGI 129
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
+ ++ST DKD+AQLV++ + L+N +N+ D ++++FGV PEKIVDY SLIGD DN+
Sbjct: 130 RTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGVLAKFGVPPEKIVDYLSLIGDTVDNV 189
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV K+GPKTAVK L +Y SL+N+I A IKGV+G+NLR L+WLPK +++LT+K DCD
Sbjct: 190 PGVPKVGPKTAVKWLGEYGSLDNVIARAGEIKGVVGENLRNTLDWLPKGRELLTVKIDCD 249
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L + ++ E+L+ +D L+ F++Y
Sbjct: 250 LATEVPTL-EALVDGGEDRAKLVDFFSRYG 278
>gi|109898489|ref|YP_661744.1| exodeoxyribonuclease I [Pseudoalteromonas atlantica T6c]
gi|109700770|gb|ABG40690.1| Exodeoxyribonuclease I subunit C [Pseudoalteromonas atlantica T6c]
Length = 476
Score = 317 bits (812), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 172/474 (36%), Positives = 269/474 (56%), Gaps = 11/474 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+ W+DYET+G+N ++D QFA IRTD+ LN I P+M++ + D+LP+P+ACLIT I
Sbjct: 5 SIYWHDYETWGVNPQKDPACQFAGIRTDLDLNIISQPLMIFNQIPNDYLPNPQACLITGI 64
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L +G+ E F I + F P T GYN I FDDE+TR+ +RN +PY REW+
Sbjct: 65 TPQHSLRDGMVEPDFIQKIHQEFSAPETCVAGYNNIRFDDEVTRYTLYRNFYDPYGREWR 124
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD+I+V++A Y L P GI WP K++G PSFKLE LS NN+ H AHDA+SDV A
Sbjct: 125 NGNSRWDIIDVVRACYALRPEGIEWPLKDDGSPSFKLEDLSKANNIEHAAAHDAMSDVHA 184
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+G+A+L++ P+L++++ +LR KK V+A P +I+ + + + + P+
Sbjct: 185 TIGMAKLVKTAQPKLYDYLFNLRFKKNVIALFDINAHTPLVHISSKLPAINGCCTWIAPV 244
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN I NL D + + +++I + L N +E +PI +IH+N+SP
Sbjct: 245 AQHPTNKNAFIVVNLALDIQPLIDLSVDEIIEKLYTPSNMLEEGEQRLPIKLIHVNKSP- 303
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
VI+ K L + R + N+K + + + K+ + + E + D
Sbjct: 304 VIAPAKTLDESNAARLGINREVCLSNLKV---LKQHPELVAKLIAVHSTTRDNKEQDADH 360
Query: 669 ELYNN-FISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY+ F S KD + + S ++L+++ FE+ +L+ L+F Y+ RNF +L+ +EL
Sbjct: 361 ALYSGAFFSPKDRALMDQVLHSSTEQLADLTLPFEDPRLDNLLFYYKGRNFPTSLNEQEL 420
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLK---KANEHDTKILNALLMYGK 778
+RW+ +R R + + Y++ LL ++N IL AL Y +
Sbjct: 421 QRWQNHRKFRLLDDTSPSSITMTDYVQTLELLSEQYQSNNDKLAILKALYTYAE 474
>gi|424772459|ref|ZP_18199553.1| exonuclease I, partial [Escherichia coli O111:H8 str. CFSAN001632]
gi|421938010|gb|EKT95597.1| exonuclease I, partial [Escherichia coli O111:H8 str. CFSAN001632]
Length = 463
Score = 317 bits (811), Expect = 4e-83, Method: Composition-based stats.
Identities = 163/430 (37%), Positives = 246/430 (57%), Gaps = 13/430 (3%)
Query: 315 WYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKITPQ 374
++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT ITPQ
Sbjct: 1 FHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQ 60
Query: 375 FCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKNNC 434
G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W+++
Sbjct: 61 EARAKGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDN 120
Query: 435 SRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRATLG 494
SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV AT+
Sbjct: 121 SRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIA 180
Query: 495 LARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPICIH 554
+A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P+ H
Sbjct: 181 MAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLAWH 240
Query: 555 PMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIVISN 612
P N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P V++
Sbjct: 241 PENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP-VLAQ 299
Query: 613 LKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLELNIDE 668
L R + N+K + N + +K+ + SD N+D
Sbjct: 300 ANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD---NVDA 353
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
+LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y E +
Sbjct: 354 QLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQ 413
Query: 729 RWKKYRISRF 738
RW ++R F
Sbjct: 414 RWLEHRRQVF 423
>gi|411009577|ref|ZP_11385906.1| exodeoxyribonuclease I [Aeromonas aquariorum AAK1]
Length = 475
Score = 317 bits (811), Expect = 4e-83, Method: Composition-based stats.
Identities = 165/430 (38%), Positives = 246/430 (57%), Gaps = 10/430 (2%)
Query: 307 HNGNS-TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRA 365
H G+ TF ++DYETFG++ RDRP QFA IRTD N I P+++YCKP D+LP+P A
Sbjct: 6 HAGSEPTFYFHDYETFGISPARDRPAQFAGIRTDGDFNLIGEPLVIYCKPPADYLPEPEA 65
Query: 366 CLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINP 425
CLIT ITPQ + +G+ E F I + F PGT +GYN+I FDDE+TR+ +RN +P
Sbjct: 66 CLITGITPQKAMKDGLCEADFIRQIHEQFATPGTCVLGYNSIRFDDEVTRYTLYRNFYDP 125
Query: 426 YEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDA 485
Y W+N SRWD++++++A Y L P GI W + GKPSFKLE L+ N ++H AHDA
Sbjct: 126 YAYAWQNGNSRWDILDMLRACYALRPEGIEWAFDEEGKPSFKLEKLTVANGVAHANAHDA 185
Query: 486 LSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYI 545
LSDV AT+ +A+L++ P+LF+++ LR K V A I +P +++ MFS
Sbjct: 186 LSDVLATIEMAKLVKKAQPKLFDYLFDLRNKNKVKALIDVVTMKPLVHVSGMFSPWQGCA 245
Query: 546 SLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHL 603
S + P+ HP N+N +I +L DP + +IR+ L KK + IP+ ++H+
Sbjct: 246 SWVSPLAWHPSNQNAVIMVDLTRDPTPLIELTSEEIRERLYTKKEELGDLAGIPVKLVHI 305
Query: 604 NRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKC--ASSILNNTYIWKKIFLDYKINNSD 661
N+ P V++ L+ + D K++ A S + + ++F N+D
Sbjct: 306 NKCP-VLAPAATLTPERADQLGIDRAQCRKSLDLLRAHSEVREKLV--EVFNQEFAGNND 362
Query: 662 LELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
+ D +LY F D + ++R+ L F F + +L E++F YRARN+ T
Sbjct: 363 GD--PDTQLYAGFFGHGDKSTMDLVRATPADLLGEREFAFTDPRLPEMLFRYRARNWPHT 420
Query: 722 LSYKELKRWK 731
LS E KRW+
Sbjct: 421 LSEAEQKRWR 430
>gi|168229383|ref|ZP_02654441.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|168466281|ref|ZP_02700151.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|194472204|ref|ZP_03078188.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|205353209|ref|YP_002227010.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|207857502|ref|YP_002244153.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|375124046|ref|ZP_09769210.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Gallinarum str. SG9]
gi|378954577|ref|YP_005212064.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Gallinarum/pullorum str. RKS5078]
gi|417531980|ref|ZP_12186518.1| Exodeoxyribonuclease 1 [Salmonella enterica subsp. enterica serovar
Urbana str. R8-2977]
gi|418760630|ref|ZP_13316783.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 35185]
gi|418764975|ref|ZP_13321068.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 35199]
gi|418772245|ref|ZP_13328249.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 21539]
gi|418775460|ref|ZP_13331418.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 33953]
gi|418781368|ref|ZP_13337251.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 35188]
gi|418783633|ref|ZP_13339478.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 21559]
gi|418803424|ref|ZP_13359045.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 35202]
gi|419789593|ref|ZP_14315273.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. Levine 1]
gi|419792344|ref|ZP_14317986.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. Levine 15]
gi|421359518|ref|ZP_15809811.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 622731-39]
gi|421363912|ref|ZP_15814150.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639016-6]
gi|421366953|ref|ZP_15817155.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 640631]
gi|421372932|ref|ZP_15823077.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-0424]
gi|421375297|ref|ZP_15825410.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-6]
gi|421382080|ref|ZP_15832131.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 485549-17]
gi|421386793|ref|ZP_15836799.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-22]
gi|421391133|ref|ZP_15841104.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-70]
gi|421395501|ref|ZP_15845437.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-26]
gi|421398059|ref|ZP_15847968.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-37]
gi|421402387|ref|ZP_15852245.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-46]
gi|421409166|ref|ZP_15858961.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-50]
gi|421411655|ref|ZP_15861419.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-1427]
gi|421418068|ref|ZP_15867774.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-2659]
gi|421422626|ref|ZP_15872294.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 78-1757]
gi|421425016|ref|ZP_15874653.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22510-1]
gi|421433113|ref|ZP_15882681.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 8b-1]
gi|421434248|ref|ZP_15883798.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648905 5-18]
gi|421441993|ref|ZP_15891453.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 6-18]
gi|421443120|ref|ZP_15892562.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-3079]
gi|421449899|ref|ZP_15899279.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 58-6482]
gi|436630526|ref|ZP_20515385.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22704]
gi|436794221|ref|ZP_20522027.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS44]
gi|436809378|ref|ZP_20528758.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1882]
gi|436814870|ref|ZP_20532421.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1884]
gi|436844292|ref|ZP_20538050.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1594]
gi|436854378|ref|ZP_20544012.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1566]
gi|436855898|ref|ZP_20545023.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1580]
gi|436864398|ref|ZP_20550365.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1543]
gi|436870134|ref|ZP_20553940.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1441]
gi|436877625|ref|ZP_20558553.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1810]
gi|436886564|ref|ZP_20562984.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1558]
gi|436893657|ref|ZP_20567564.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1018]
gi|436901405|ref|ZP_20572315.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1010]
gi|436912558|ref|ZP_20578387.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1729]
gi|436920437|ref|ZP_20583033.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0895]
gi|436926773|ref|ZP_20586599.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0899]
gi|436936507|ref|ZP_20591947.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1457]
gi|436940520|ref|ZP_20594464.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1747]
gi|436950815|ref|ZP_20599870.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0968]
gi|436961861|ref|ZP_20605235.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1444]
gi|436969050|ref|ZP_20608171.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1445]
gi|436984731|ref|ZP_20614606.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1559]
gi|436989201|ref|ZP_20616502.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1565]
gi|437000453|ref|ZP_20620682.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1808]
gi|437021005|ref|ZP_20627740.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1811]
gi|437032461|ref|ZP_20631942.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0956]
gi|437044246|ref|ZP_20637199.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1455]
gi|437047251|ref|ZP_20638766.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1575]
gi|437059029|ref|ZP_20645876.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1725]
gi|437064930|ref|ZP_20648704.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1745]
gi|437077014|ref|ZP_20655222.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1791]
gi|437082254|ref|ZP_20658302.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1795]
gi|437091918|ref|ZP_20663518.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 576709]
gi|437113757|ref|ZP_20668959.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 635290-58]
gi|437125548|ref|ZP_20674075.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-16]
gi|437128768|ref|ZP_20675455.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-19]
gi|437139073|ref|ZP_20681555.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-2]
gi|437144255|ref|ZP_20684869.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-9]
gi|437151153|ref|ZP_20689030.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629163]
gi|437161758|ref|ZP_20695673.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE15-1]
gi|437170073|ref|ZP_20700168.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_N202]
gi|437178943|ref|ZP_20705061.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_56-3991]
gi|437180627|ref|ZP_20706085.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_76-3618]
gi|437262051|ref|ZP_20718797.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_81-2490]
gi|437267503|ref|ZP_20721255.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL909]
gi|437280774|ref|ZP_20728151.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL913]
gi|437289818|ref|ZP_20731196.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_69-4941]
gi|437311995|ref|ZP_20736103.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 638970-15]
gi|437330533|ref|ZP_20741697.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 17927]
gi|437346751|ref|ZP_20746905.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS4]
gi|437435299|ref|ZP_20756386.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 40-18]
gi|437460907|ref|ZP_20761860.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 1-1]
gi|437479846|ref|ZP_20768193.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 4-1]
gi|437494482|ref|ZP_20772511.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642046 4-7]
gi|437505463|ref|ZP_20775517.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648898 4-5]
gi|437521386|ref|ZP_20778848.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648899 3-17]
gi|437550834|ref|ZP_20783654.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648900 1-16]
gi|437572175|ref|ZP_20788937.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 1-17]
gi|437589615|ref|ZP_20794185.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 39-2]
gi|437599883|ref|ZP_20797042.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648902 6-8]
gi|437616947|ref|ZP_20802699.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648903 1-6]
gi|437653383|ref|ZP_20810196.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648904 3-6]
gi|437662052|ref|ZP_20813269.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 653049 13-19]
gi|437696025|ref|ZP_20822348.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 9-7]
gi|437710639|ref|ZP_20826583.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 42-20]
gi|437734434|ref|ZP_20832212.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 16-16]
gi|437783302|ref|ZP_20836642.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 76-2651]
gi|437807730|ref|ZP_20839896.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 33944]
gi|437919979|ref|ZP_20850713.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 6.0562-1]
gi|438053585|ref|ZP_20856354.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-5646]
gi|438090635|ref|ZP_20860637.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 81-2625]
gi|438109386|ref|ZP_20867349.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 53-407]
gi|438129783|ref|ZP_20873392.1| exonuclease I [Salmonella enterica subsp. enterica serovar Pullorum
str. ATCC 9120]
gi|445176685|ref|ZP_21397656.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE8a]
gi|445183736|ref|ZP_21398772.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 20037]
gi|445232427|ref|ZP_21406061.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE10]
gi|445332001|ref|ZP_21414343.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 18569]
gi|445353535|ref|ZP_21421276.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13-1]
gi|445359341|ref|ZP_21423148.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. PT23]
gi|194458568|gb|EDX47407.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|195631242|gb|EDX49802.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|205272990|emb|CAR37938.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|205335677|gb|EDZ22441.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|206709305|emb|CAR33645.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|326628296|gb|EGE34639.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Gallinarum str. SG9]
gi|353663801|gb|EHD02394.1| Exodeoxyribonuclease 1 [Salmonella enterica subsp. enterica serovar
Urbana str. R8-2977]
gi|357205188|gb|AET53234.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Gallinarum/pullorum str. RKS5078]
gi|392615378|gb|EIW97817.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. Levine 1]
gi|392619068|gb|EIX01454.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. Levine 15]
gi|392732359|gb|EIZ89570.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 21539]
gi|392741924|gb|EIZ99019.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 35199]
gi|392742182|gb|EIZ99272.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 35185]
gi|392747136|gb|EJA04137.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 35188]
gi|392748533|gb|EJA05519.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 33953]
gi|392756645|gb|EJA13540.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 21559]
gi|392772953|gb|EJA29650.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 35202]
gi|395985141|gb|EJH94314.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 622731-39]
gi|395985387|gb|EJH94557.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639016-6]
gi|395989608|gb|EJH98742.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 640631]
gi|395998560|gb|EJI07587.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-0424]
gi|395999180|gb|EJI08202.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 485549-17]
gi|396005283|gb|EJI14262.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-6]
gi|396011434|gb|EJI20344.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-22]
gi|396012140|gb|EJI21038.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-26]
gi|396012543|gb|EJI21439.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-70]
gi|396026097|gb|EJI34870.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-50]
gi|396031924|gb|EJI40649.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-46]
gi|396032255|gb|EJI40979.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-37]
gi|396039235|gb|EJI47863.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-2659]
gi|396041941|gb|EJI50564.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 78-1757]
gi|396045156|gb|EJI53750.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-1427]
gi|396049329|gb|EJI57872.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 8b-1]
gi|396058612|gb|EJI67073.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22510-1]
gi|396060854|gb|EJI69295.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648905 5-18]
gi|396062670|gb|EJI71081.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 6-18]
gi|396068715|gb|EJI77061.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 58-6482]
gi|396070904|gb|EJI79231.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-3079]
gi|434941783|gb|ELL48174.1| exonuclease I [Salmonella enterica subsp. enterica serovar Pullorum
str. ATCC 9120]
gi|434960895|gb|ELL54232.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22704]
gi|434962843|gb|ELL55997.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS44]
gi|434967195|gb|ELL60030.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1882]
gi|434972986|gb|ELL65374.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1884]
gi|434978878|gb|ELL70870.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1594]
gi|434983181|gb|ELL74989.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1566]
gi|434992112|gb|ELL83582.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1580]
gi|434995433|gb|ELL86749.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1543]
gi|435002462|gb|ELL93527.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1441]
gi|435008509|gb|ELL99332.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1810]
gi|435011807|gb|ELM02510.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1558]
gi|435018653|gb|ELM09115.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1018]
gi|435020839|gb|ELM11228.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1010]
gi|435026803|gb|ELM16934.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1729]
gi|435027956|gb|ELM18048.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0895]
gi|435036614|gb|ELM26433.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0899]
gi|435039345|gb|ELM29126.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1457]
gi|435045425|gb|ELM35053.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1747]
gi|435051000|gb|ELM40504.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1444]
gi|435051282|gb|ELM40784.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0968]
gi|435059151|gb|ELM48441.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1445]
gi|435063362|gb|ELM52514.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1559]
gi|435071459|gb|ELM60402.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1565]
gi|435076371|gb|ELM65156.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1808]
gi|435078605|gb|ELM67331.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1811]
gi|435078973|gb|ELM67687.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0956]
gi|435081450|gb|ELM70092.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1455]
gi|435094842|gb|ELM83181.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1725]
gi|435100423|gb|ELM88593.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1575]
gi|435100672|gb|ELM88840.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1745]
gi|435103852|gb|ELM91926.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1791]
gi|435110600|gb|ELM98517.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1795]
gi|435112824|gb|ELN00689.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 576709]
gi|435116055|gb|ELN03806.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 635290-58]
gi|435118207|gb|ELN05887.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-16]
gi|435128284|gb|ELN15635.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-19]
gi|435132595|gb|ELN19793.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-2]
gi|435139246|gb|ELN26250.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-9]
gi|435144208|gb|ELN31050.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE15-1]
gi|435145036|gb|ELN31865.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629163]
gi|435147853|gb|ELN34605.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_N202]
gi|435152360|gb|ELN38990.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_56-3991]
gi|435162422|gb|ELN48606.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_81-2490]
gi|435167489|gb|ELN53411.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_76-3618]
gi|435170262|gb|ELN56018.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL913]
gi|435176019|gb|ELN61421.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL909]
gi|435182082|gb|ELN67114.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_69-4941]
gi|435183127|gb|ELN68102.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 638970-15]
gi|435189179|gb|ELN73824.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS4]
gi|435189717|gb|ELN74341.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 17927]
gi|435213939|gb|ELN96799.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 40-18]
gi|435219523|gb|ELO01885.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 4-1]
gi|435220599|gb|ELO02881.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 1-1]
gi|435227380|gb|ELO08889.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642046 4-7]
gi|435235520|gb|ELO16323.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648898 4-5]
gi|435246518|gb|ELO26520.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648900 1-16]
gi|435247815|gb|ELO27744.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 1-17]
gi|435251143|gb|ELO30826.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648899 3-17]
gi|435256456|gb|ELO35762.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 39-2]
gi|435261675|gb|ELO40829.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648903 1-6]
gi|435262801|gb|ELO41883.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648902 6-8]
gi|435264884|gb|ELO43774.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648904 3-6]
gi|435267698|gb|ELO46363.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 653049 13-19]
gi|435277325|gb|ELO55279.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 9-7]
gi|435286597|gb|ELO63847.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 16-16]
gi|435288768|gb|ELO65763.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 42-20]
gi|435299013|gb|ELO75185.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 76-2651]
gi|435300769|gb|ELO76832.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 33944]
gi|435313781|gb|ELO87328.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 6.0562-1]
gi|435316308|gb|ELO89471.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 81-2625]
gi|435316324|gb|ELO89486.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-5646]
gi|435332535|gb|ELP03446.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 53-407]
gi|444856718|gb|ELX81743.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE8a]
gi|444862459|gb|ELX87313.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE10]
gi|444870658|gb|ELX95146.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 20037]
gi|444873075|gb|ELX97383.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13-1]
gi|444877064|gb|ELY01221.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 18569]
gi|444885493|gb|ELY09281.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Enteritidis str. PT23]
Length = 476
Score = 317 bits (811), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 167/431 (38%), Positives = 246/431 (57%), Gaps = 13/431 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
STFL++DYETFG + DRP QFAA+RTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G E FA I +F P T VGYN + FDDE+TR +F+RN +PY
Sbjct: 69 GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADV 188
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+L++ PRLF+++ S R K + A I P +P +++ MF + S +
Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSP 607
P+ HP N+N +I +L D L D + +R+ L K + +P+ ++H+N+ P
Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCP 308
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYK-INNSDLE 663
V++ L R + N+K + N + K IF + + SD
Sbjct: 309 -VLAQANTLRPEDADRLGINRQHCLDNLKV---LRENPQVRDKVVAIFAEAEPFAASD-- 362
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
N+D +LY+ F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL
Sbjct: 363 -NVDAQLYDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 421
Query: 724 YKELKRWKKYR 734
E +RW ++R
Sbjct: 422 DAEQQRWLEHR 432
>gi|334704672|ref|ZP_08520538.1| exodeoxyribonuclease I [Aeromonas caviae Ae398]
Length = 475
Score = 317 bits (811), Expect = 4e-83, Method: Composition-based stats.
Identities = 170/476 (35%), Positives = 258/476 (54%), Gaps = 27/476 (5%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYETFG++ +DRP QFA IRTD N I P+++YCKP D+LP+P ACLIT I
Sbjct: 12 TFYFHDYETFGISPAKDRPAQFAGIRTDGDFNVIGEPLVIYCKPPADYLPEPEACLITGI 71
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + +G+ E F I F PGT +GYN+I FDDE+TR+ +RN +PY W+
Sbjct: 72 TPQKAMKDGLCEADFIRQIHAEFATPGTCVLGYNSIRFDDEVTRYTLYRNFYDPYAYAWQ 131
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD++++++A Y L P GI W + + GKPSF+LE L+ N ++H AHDALSDV A
Sbjct: 132 NGNSRWDILDMLRACYALRPQGIEWAFDDEGKPSFRLEKLTVANGVAHANAHDALSDVLA 191
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +ARL++ P+LF ++ LR K V A I +P +++ MFS S + P+
Sbjct: 192 TIEMARLVKKAQPKLFEYLFDLRNKNKVKALIDVVTMKPLVHVSGMFSPWQGCASWVSPL 251
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIV 609
HP N+N +I +L DP + +IR+ L KK + IP+ ++H+N+ P++
Sbjct: 252 AWHPTNQNAVIMVDLTRDPTPLIELSCEEIRERLYTKKEELGDLAGIPVKLVHINKCPVL 311
Query: 610 ISNLKVLS--------SNLMFRYKFDLNCAFKNIKCA-SSILNNTYIWKKIFLDYKINNS 660
+ + R DL A ++ + N + N+
Sbjct: 312 APAATLTPERADELGINRAQCRKSLDLLRAHPEVREKLVEVFNQEFAGS--------NDG 363
Query: 661 DLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIE 720
D D +LY F D + ++R+ L F F + +L E++F YRARN+
Sbjct: 364 D----PDTQLYAGFFGHGDKSTMDLVRATPADLLGEREFAFTDPRLPEMLFRYRARNWPH 419
Query: 721 TLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMY 776
TLS E KRW+ + S +++++ Y + LE + + NE + IL +L Y
Sbjct: 420 TLSEAEQKRWRLH-CSDYFSRRLPDY---VPRLEALAEQNQGNERNFAILKSLYHY 471
>gi|161502767|ref|YP_001569879.1| exonuclease I [Salmonella enterica subsp. arizonae serovar
62:z4,z23:- str. RSK2980]
gi|160864114|gb|ABX20737.1| hypothetical protein SARI_00818 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 476
Score = 317 bits (811), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 167/430 (38%), Positives = 245/430 (56%), Gaps = 11/430 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
STFL++DYETFG + DRP QFAAIRTD N + P + YCKPA D+LP P A LIT
Sbjct: 9 QSTFLFHDYETFGTHPALDRPAQFAAIRTDNDFNIVGEPDVFYCKPADDYLPQPGAVLIT 68
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G E FA I +F P T VGYN + FDDE+TR +F+RN +PY
Sbjct: 69 GITPQEACEKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W++ SRWD+++V++A Y L P GI WP ++G PSF+LEHL+ N++ H AHDA++DV
Sbjct: 129 WQHENSRWDILDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANDIEHSNAHDAMADV 188
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+L++ PRLF+++ S R K + A I P +P +I+ MF + S +
Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHISGMFGAWRGNTSWVA 248
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSP 607
P+ HP N+N +I +L D L D + +RD L K + +P+ ++H+N+ P
Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRDRLYTAKADLGNNAAVPVKLVHINKCP 308
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYKINNSDLEL 664
V++ L R + N+K + N + K IF + + +S
Sbjct: 309 -VLAQANTLRPEDADRLGINRQHCLDNLKV---LRENPQVRDKVVAIFAEAEPFSS--PD 362
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LY+ F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL
Sbjct: 363 NVDAQLYDGFFSDSDRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDD 422
Query: 725 KELKRWKKYR 734
E +RW +R
Sbjct: 423 AEQQRWLAHR 432
>gi|204929131|ref|ZP_03220274.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|204321675|gb|EDZ06874.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
Length = 476
Score = 317 bits (811), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 167/431 (38%), Positives = 246/431 (57%), Gaps = 13/431 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
STFL++DYETFG + DRP QFAA+RTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G E FA I +F P T VGYN + FDDE+TR +F+RN +PY
Sbjct: 69 GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADV 188
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+L++ PRLF+++ S R K + A I P +P +++ MF + S +
Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSP 607
P+ HP N+N +I +L D L D + +R+ L K + +P+ ++H+N+ P
Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHVAVPVKLVHINKCP 308
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYK-INNSDLE 663
V++ L R + N+K + N + K IF + + SD
Sbjct: 309 -VLAQANTLRPEDADRLGINRQHCLDNLKV---LRENPQVRDKVVAIFAETEPFAASD-- 362
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
N+D +LY+ F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL
Sbjct: 363 -NVDAQLYDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 421
Query: 724 YKELKRWKKYR 734
E +RW ++R
Sbjct: 422 DAEQQRWLEHR 432
>gi|374336115|ref|YP_005092802.1| exodeoxyribonuclease I [Oceanimonas sp. GK1]
gi|372985802|gb|AEY02052.1| exodeoxyribonuclease I [Oceanimonas sp. GK1]
Length = 471
Score = 317 bits (811), Expect = 4e-83, Method: Composition-based stats.
Identities = 162/423 (38%), Positives = 246/423 (58%), Gaps = 7/423 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF +YD+ET G++ +DRP QFA IRTD N + P M YC+ D+LP P A LIT I
Sbjct: 8 TFYFYDFETAGVSPAKDRPVQFAGIRTDADFNELGEPQMFYCRLPADYLPSPEATLITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ +G+ E F + I + F +P T +GYN I FDDE+TR+ +RN +PY W+
Sbjct: 68 TPQKAQQDGLCEADFIARIHEQFSQPQTCILGYNNIRFDDEVTRYALYRNFHDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
SRWDL++V++AFY L P GI WP +G+PSF+LE L+ N + H +AHDAL+DVRA
Sbjct: 128 QGNSRWDLLDVVRAFYALRPEGIQWPEDEDGRPSFRLERLTQANGIDHGQAHDALADVRA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LARL++ PRLF+++ LR+K V A I ++P +++ MFS S + P+
Sbjct: 188 TIALARLLKQAQPRLFDYLFELRRKHKVKALIDIINSKPLVHVSGMFSPWQGCASWVAPL 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIV 609
HP N N +I +L D + D + +R L KK+ E +P+ ++H+N+ P V
Sbjct: 248 AWHPENANAVICVDLAKDLSPLVELDADTLRQRLYTKKSELGELPPVPLKLVHINKCP-V 306
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNIDE 668
++ LS D K++ + + I +K+ Y+ + + + ++D
Sbjct: 307 LAKAAALSEQRADELGIDRAQCRKSLDL---LRKHPEIREKVEEIYQQDGGFEADDDVDT 363
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
LY F S+ D +A++RS P+ L+ + F + +L EL+F YRARN+ TLS +E +
Sbjct: 364 ALYRGFFSEADKAAMALVRSSQPEALAELPLQFTDARLPELLFRYRARNYPHTLSEQEWQ 423
Query: 729 RWK 731
RW+
Sbjct: 424 RWR 426
>gi|417418121|ref|ZP_12159803.1| Exodeoxyribonuclease 1 [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
gi|353620171|gb|EHC70352.1| Exodeoxyribonuclease 1 [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
Length = 476
Score = 317 bits (811), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 167/431 (38%), Positives = 246/431 (57%), Gaps = 13/431 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
STFL++DYETFG + DRP QFAA+RTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G E FA I +F P T VGYN + FDDE+TR +F+RN +PY
Sbjct: 69 GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIDHSNAHDAMADV 188
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+L++ PRLF+++ S R K + A I P +P +++ MF + S +
Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSP 607
P+ HP N+N +I +L D L D + +R+ L K + +P+ ++H+N+ P
Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHVAVPVKLVHINKCP 308
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYK-INNSDLE 663
V++ L R + N+K + N + K IF + + SD
Sbjct: 309 -VLAQANTLRPEDADRLGINRQHCLDNLKV---LRENPQVRDKVVAIFAEAEPFAASD-- 362
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
N+D +LY+ F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL
Sbjct: 363 -NVDAQLYDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 421
Query: 724 YKELKRWKKYR 734
E +RW ++R
Sbjct: 422 DAEQQRWLEHR 432
>gi|200388584|ref|ZP_03215196.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|199605682|gb|EDZ04227.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
Length = 476
Score = 317 bits (811), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 167/431 (38%), Positives = 246/431 (57%), Gaps = 13/431 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
STFL++DYETFG + DRP QFAA+RTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G E FA I +F P T VGYN + FDDE+TR +F+RN +PY
Sbjct: 69 GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADV 188
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+L++ PRLF+++ S R K + A I P +P +++ MF + S +
Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSP 607
P+ HP N+N +I +L D L D + +R+ L K + +P+ ++H+N+ P
Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHVAVPVKLVHINKCP 308
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYK-INNSDLE 663
V++ L R + N+K + N + K IF + + SD
Sbjct: 309 -VLAQANTLRPEDADRLGINRQHCLDNLKV---LRENPQVRDKVVAIFAEAEPFAASD-- 362
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
N+D +LY+ F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL
Sbjct: 363 -NVDAQLYDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 421
Query: 724 YKELKRWKKYR 734
E +RW ++R
Sbjct: 422 DTEQQRWLEHR 432
>gi|62180647|ref|YP_217064.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|167551009|ref|ZP_02344764.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|168259635|ref|ZP_02681608.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|168818244|ref|ZP_02830244.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|194443671|ref|YP_002041334.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. SL254]
gi|197247769|ref|YP_002147025.1| exonuclease I [Salmonella enterica subsp. enterica serovar Agona
str. SL483]
gi|198243454|ref|YP_002216153.1| exonuclease I [Salmonella enterica subsp. enterica serovar Dublin
str. CT_02021853]
gi|224583437|ref|YP_002637235.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|238913451|ref|ZP_04657288.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Tennessee str. CDC07-0191]
gi|375001874|ref|ZP_09726214.1| exonuclease [Salmonella enterica subsp. enterica serovar Infantis
str. SARB27]
gi|375114972|ref|ZP_09760142.1| Exonuclease, RNase T and DNA polymerase III [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SCSA50]
gi|375119632|ref|ZP_09764799.1| LPS-assembly lipoprotein RlpB [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
gi|418789387|ref|ZP_13345174.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19447]
gi|418794187|ref|ZP_13349909.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19449]
gi|418796786|ref|ZP_13352477.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19567]
gi|418809617|ref|ZP_13365169.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 21550]
gi|418813771|ref|ZP_13369292.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 22513]
gi|418815038|ref|ZP_13370546.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 21538]
gi|418822825|ref|ZP_13378236.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 22425]
gi|418830127|ref|ZP_13385090.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM N18486]
gi|418836511|ref|ZP_13391395.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM N1543]
gi|418840718|ref|ZP_13395547.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 21554]
gi|418844833|ref|ZP_13399619.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19443]
gi|418850750|ref|ZP_13405466.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 37978]
gi|418853742|ref|ZP_13408427.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19593]
gi|421884618|ref|ZP_16315827.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Senftenberg str. SS209]
gi|440763363|ref|ZP_20942404.1| exonuclease I [Salmonella enterica subsp. enterica serovar Agona
str. SH11G1113]
gi|440769119|ref|ZP_20948079.1| exonuclease I [Salmonella enterica subsp. enterica serovar Agona
str. SH08SF124]
gi|440771264|ref|ZP_20950183.1| exonuclease I [Salmonella enterica subsp. enterica serovar Agona
str. SH10GFN094]
gi|445154583|ref|ZP_21391910.1| exonuclease I [Salmonella enterica subsp. enterica serovar Dublin
str. HWS51]
gi|62128280|gb|AAX65983.1| exonuclease I, 3' --> 5' specific; deoxyribophosphodiesterase
[Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|194402334|gb|ACF62556.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|197211472|gb|ACH48869.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Agona str. SL483]
gi|197937970|gb|ACH75303.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|205323967|gb|EDZ11806.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|205344805|gb|EDZ31569.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|205351000|gb|EDZ37631.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|224467964|gb|ACN45794.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|322715118|gb|EFZ06689.1| Exonuclease, RNase T and DNA polymerase III [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SCSA50]
gi|326623899|gb|EGE30244.1| LPS-assembly lipoprotein RlpB [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
gi|353076562|gb|EHB42322.1| exonuclease [Salmonella enterica subsp. enterica serovar Infantis
str. SARB27]
gi|379985745|emb|CCF88100.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Senftenberg str. SS209]
gi|392760628|gb|EJA17463.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19447]
gi|392762182|gb|EJA18998.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19449]
gi|392770159|gb|EJA26887.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19567]
gi|392773702|gb|EJA30398.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 21550]
gi|392774997|gb|EJA31692.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 22513]
gi|392787082|gb|EJA43630.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 22425]
gi|392793417|gb|EJA49861.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 21538]
gi|392800872|gb|EJA57102.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM N1543]
gi|392802360|gb|EJA58574.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM N18486]
gi|392811208|gb|EJA67220.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 21554]
gi|392813642|gb|EJA69606.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19443]
gi|392818600|gb|EJA74484.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 37978]
gi|392825882|gb|EJA81616.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19593]
gi|436415107|gb|ELP13028.1| exonuclease I [Salmonella enterica subsp. enterica serovar Agona
str. SH08SF124]
gi|436420262|gb|ELP18129.1| exonuclease I [Salmonella enterica subsp. enterica serovar Agona
str. SH11G1113]
gi|436422299|gb|ELP20137.1| exonuclease I [Salmonella enterica subsp. enterica serovar Agona
str. SH10GFN094]
gi|444850828|gb|ELX75925.1| exonuclease I [Salmonella enterica subsp. enterica serovar Dublin
str. HWS51]
Length = 476
Score = 317 bits (811), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 167/431 (38%), Positives = 246/431 (57%), Gaps = 13/431 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
STFL++DYETFG + DRP QFAA+RTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G E FA I +F P T VGYN + FDDE+TR +F+RN +PY
Sbjct: 69 GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADV 188
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+L++ PRLF+++ S R K + A I P +P +++ MF + S +
Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSP 607
P+ HP N+N +I +L D L D + +R+ L K + +P+ ++H+N+ P
Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHVAVPVKLVHINKCP 308
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYK-INNSDLE 663
V++ L R + N+K + N + K IF + + SD
Sbjct: 309 -VLAQANTLRPEDADRLGINRQHCLDNLKV---LRENPQVRDKVVAIFAEAEPFAASD-- 362
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
N+D +LY+ F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL
Sbjct: 363 -NVDAQLYDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 421
Query: 724 YKELKRWKKYR 734
E +RW ++R
Sbjct: 422 DAEQQRWLEHR 432
>gi|262275634|ref|ZP_06053443.1| exodeoxyribonuclease I [Grimontia hollisae CIP 101886]
gi|262219442|gb|EEY70758.1| exodeoxyribonuclease I [Grimontia hollisae CIP 101886]
Length = 474
Score = 317 bits (811), Expect = 4e-83, Method: Composition-based stats.
Identities = 172/472 (36%), Positives = 261/472 (55%), Gaps = 18/472 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYETFG + DRP QFA +RTD N I P+++YC+P D+LP P ACLIT I
Sbjct: 8 TFFFFDYETFGTSPALDRPCQFAGVRTDKDFNIIGEPLVIYCQPPNDYLPQPEACLITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G+PE +F + I + PGT +VGYN I FDDE+TR+ +RN +PY W+
Sbjct: 68 TPQTAVKRGLPEPEFIAKIHEQLSMPGTCAVGYNNIRFDDEVTRYTLYRNFFDPYGWIWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++A Y L P GI WP + G SFKLEHLS N + H AHDA++DV A
Sbjct: 128 NGNSRWDLLDVMRAAYALRPDGIEWPVNDEGNISFKLEHLSVANGIEHSNAHDAMADVHA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+ ++ PRLF+++ + R K + A I +P +++ MF + S + P+
Sbjct: 188 TIEMAKKLKAAQPRLFDYLYTHRNKNKLTALIDVVSMKPLVHVSGMFGVERGNTSWIVPV 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN +I +L DP D + +R+ L K D +P+ +IH+N+ P
Sbjct: 248 AWHPDNKNAVIAIDLGRDPSPLFDLDADALRERLYTKHADLAPDELPVPVKLIHINKCP- 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL-NID 667
V+++ K L R D +N+K + + I +K+ Y N+D
Sbjct: 307 VLADAKTLRPEDAARLGIDRQQCLENLK---KLQAHPEIREKLVTLYAEKPEYASSGNVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY+ F S D + I+R P+ L+ ++ + +++ L+F YRARNF TL+ E
Sbjct: 364 AALYDGFFSPADRSTMDIIRQTKPENLAALDIQVSDPRIKPLLFRYRARNFPWTLTDSEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK---ILNALLMY 776
K+W +R ++ + Y N+ L +AN++D K IL ++ Y
Sbjct: 424 KQWHMHR-RDYFEAELPAYMANL------EALAEANQNDEKKFAILKSVYHY 468
>gi|16765397|ref|NP_461012.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|167990978|ref|ZP_02572077.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|168242135|ref|ZP_02667067.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|194450582|ref|YP_002046116.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|374981093|ref|ZP_09722423.1| Exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|378445503|ref|YP_005233135.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|378450741|ref|YP_005238100.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|378699980|ref|YP_005181937.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|378984630|ref|YP_005247785.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|378989455|ref|YP_005252619.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
gi|386591885|ref|YP_006088285.1| Exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Heidelberg str. B182]
gi|419730276|ref|ZP_14257222.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41579]
gi|419734793|ref|ZP_14261678.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41563]
gi|419738446|ref|ZP_14265209.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41573]
gi|419745078|ref|ZP_14271721.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41566]
gi|419746877|ref|ZP_14273447.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41565]
gi|421572057|ref|ZP_16017721.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00322]
gi|421574542|ref|ZP_16020163.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00325]
gi|421579850|ref|ZP_16025412.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00326]
gi|421586342|ref|ZP_16031824.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00328]
gi|422026340|ref|ZP_16372733.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm1]
gi|422031364|ref|ZP_16377533.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm2]
gi|427550829|ref|ZP_18928036.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm8]
gi|427567130|ref|ZP_18932751.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm9]
gi|427587444|ref|ZP_18937542.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm3]
gi|427611076|ref|ZP_18942408.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm4]
gi|427634585|ref|ZP_18947300.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm6]
gi|427656374|ref|ZP_18952067.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm10]
gi|427661521|ref|ZP_18956978.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm11]
gi|427669905|ref|ZP_18961778.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm12]
gi|445146502|ref|ZP_21387716.1| exonuclease I [Salmonella enterica subsp. enterica serovar Dublin
str. SL1438]
gi|16420598|gb|AAL20971.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|194408886|gb|ACF69105.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|205330564|gb|EDZ17328.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|205338443|gb|EDZ25207.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|261247282|emb|CBG25107.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|267994119|gb|ACY89004.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|301158628|emb|CBW18140.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|312913058|dbj|BAJ37032.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|321224713|gb|EFX49776.1| Exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|332989002|gb|AEF07985.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
gi|381294284|gb|EIC35423.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41579]
gi|381296307|gb|EIC37413.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41563]
gi|381302390|gb|EIC43430.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41573]
gi|381306502|gb|EIC47375.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41566]
gi|381320567|gb|EIC61149.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41565]
gi|383798929|gb|AFH46011.1| Exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Heidelberg str. B182]
gi|402518727|gb|EJW26100.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00322]
gi|402521325|gb|EJW28663.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00326]
gi|402524742|gb|EJW32039.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00325]
gi|402528396|gb|EJW35650.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00328]
gi|414017659|gb|EKT01357.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm1]
gi|414018558|gb|EKT02200.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm8]
gi|414020122|gb|EKT03711.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm2]
gi|414032283|gb|EKT15291.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm9]
gi|414033526|gb|EKT16475.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm3]
gi|414036686|gb|EKT19498.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm4]
gi|414046674|gb|EKT28989.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm10]
gi|414048047|gb|EKT30304.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm6]
gi|414052738|gb|EKT34766.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm11]
gi|414059348|gb|EKT40930.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm12]
gi|444845399|gb|ELX70609.1| exonuclease I [Salmonella enterica subsp. enterica serovar Dublin
str. SL1438]
Length = 476
Score = 317 bits (811), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 167/431 (38%), Positives = 246/431 (57%), Gaps = 13/431 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
STFL++DYETFG + DRP QFAA+RTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G E FA I +F P T VGYN + FDDE+TR +F+RN +PY
Sbjct: 69 GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTRANGIEHSNAHDAMADV 188
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+L++ PRLF+++ S R K + A I P +P +++ MF + S +
Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSP 607
P+ HP N+N +I +L D L D + +R+ L K + +P+ ++H+N+ P
Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCP 308
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYK-INNSDLE 663
V++ L R + N+K + N + K IF + + SD
Sbjct: 309 -VLAQANTLRPEDADRLGINRQHCLDNLKV---LRENPQVRDKVVAIFAEAEPFAASD-- 362
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
N+D +LY+ F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL
Sbjct: 363 -NVDAQLYDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 421
Query: 724 YKELKRWKKYR 734
E +RW ++R
Sbjct: 422 DAEQQRWLEHR 432
>gi|420257905|ref|ZP_14760652.1| exonuclease I [Yersinia enterocolitica subsp. enterocolitica
WA-314]
gi|404514635|gb|EKA28423.1| exonuclease I [Yersinia enterocolitica subsp. enterocolitica
WA-314]
Length = 476
Score = 317 bits (811), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 167/477 (35%), Positives = 261/477 (54%), Gaps = 15/477 (3%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
N TF +DYETFG DRP QFA +RTD+ N I+ P+++YC PA D+LP P A +
Sbjct: 5 NKQPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQPEAVM 64
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
IT ITPQ L NG+ E +FA I + F PGT +GYN I FDDE++R +F+RN +PY
Sbjct: 65 ITGITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYA 124
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
W+ SRWDL++V++A Y L P GI WP G PSFKLEHL+ N + H AHDA+S
Sbjct: 125 YSWQGGNSRWDLLDVMRACYALRPEGIVWPENEEGLPSFKLEHLTKANGVEHLHAHDAMS 184
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ +A+ ++ PRLF+++ R K + A I P +++ MF + S
Sbjct: 185 DVYATIAMAKRVKQAQPRLFDYLYQHRSKHKINALIDIADMTPLVHVSGMFGAARGNTSW 244
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
+ P+ HP NKN +I +L D L D + +R+ L +++ +P+ ++H+N
Sbjct: 245 VAPLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLSAQDAAVPLKLVHIN 304
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF-LDYKINNSDLE 663
+ P++ +L N R D +N++ + N + +K+ L + +
Sbjct: 305 KCPVLAPAKTLLPEN-ADRLGIDRQRCLQNLQL---LRQNPQVREKVVALFAEAEPFAVS 360
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
++D +LYN F S D + I+ + L ++ F++ +LE L+F +RARN+ TL+
Sbjct: 361 DDVDAQLYNGFFSDADRATMKIILQTKAQNLPALDLTFQDPRLEVLLFRFRARNYPNTLT 420
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK--ILNALLMYGK 778
E +RW +R +K + + L++E+L + + K +L AL Y +
Sbjct: 421 DSEQQRWLAHRREALNPEK-----VQDYVLQLEALYNQYEDDKEKLALLKALFDYAR 472
>gi|416426230|ref|ZP_11692795.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|416430493|ref|ZP_11695052.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|416440303|ref|ZP_11700796.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|416442533|ref|ZP_11702415.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|416452498|ref|ZP_11709049.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|416456678|ref|ZP_11711631.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|416470034|ref|ZP_11718673.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|416474944|ref|ZP_11720346.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|416492396|ref|ZP_11727433.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|416500582|ref|ZP_11731586.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|416505020|ref|ZP_11733516.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB31]
gi|416513571|ref|ZP_11737939.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. ATCC BAA710]
gi|416531555|ref|ZP_11745661.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. LQC 10]
gi|416536760|ref|ZP_11748574.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB30]
gi|416541440|ref|ZP_11750973.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|416559271|ref|ZP_11760606.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 42N]
gi|416569882|ref|ZP_11765745.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 4441 H]
gi|416579464|ref|ZP_11771322.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|416584674|ref|ZP_11774324.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|416591113|ref|ZP_11778229.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|416596284|ref|ZP_11781252.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|416604144|ref|ZP_11785960.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|416613634|ref|ZP_11792138.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|416619698|ref|ZP_11795307.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|416630264|ref|ZP_11800622.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|416642171|ref|ZP_11805794.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|416651917|ref|ZP_11811395.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|416654553|ref|ZP_11812234.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|416668295|ref|ZP_11818839.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|416673519|ref|ZP_11820905.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|416701341|ref|ZP_11829365.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|416705230|ref|ZP_11830785.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|416714942|ref|ZP_11838239.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|416716263|ref|ZP_11838687.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|416721645|ref|ZP_11842804.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|416732062|ref|ZP_11849627.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|416741302|ref|ZP_11855030.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008282]
gi|416746142|ref|ZP_11857703.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|416753441|ref|ZP_11860831.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|416762846|ref|ZP_11866761.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|416768217|ref|ZP_11870473.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
gi|418484227|ref|ZP_13053229.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 80959-06]
gi|418491954|ref|ZP_13058458.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035278]
gi|418493863|ref|ZP_13060324.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035318]
gi|418497436|ref|ZP_13063854.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035320]
gi|418502208|ref|ZP_13068581.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035321]
gi|418508966|ref|ZP_13075265.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035327]
gi|418527889|ref|ZP_13093844.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008286]
gi|322613666|gb|EFY10606.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|322620237|gb|EFY17106.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|322623283|gb|EFY20124.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|322630488|gb|EFY27257.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|322632835|gb|EFY29580.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|322638832|gb|EFY35526.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|322640283|gb|EFY36945.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|322647148|gb|EFY43647.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|322648974|gb|EFY45417.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|322653880|gb|EFY50204.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|322660987|gb|EFY57216.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|322663072|gb|EFY59279.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|322668517|gb|EFY64672.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|322673348|gb|EFY69451.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|322679134|gb|EFY75188.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|322683229|gb|EFY79244.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|322685901|gb|EFY81891.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|323195188|gb|EFZ80369.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|323198756|gb|EFZ83856.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|323202400|gb|EFZ87443.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|323213844|gb|EFZ98621.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|323216128|gb|EGA00858.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|323223218|gb|EGA07560.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|323223733|gb|EGA08040.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|323231339|gb|EGA15453.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|323232569|gb|EGA16666.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|323240988|gb|EGA25028.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|323245593|gb|EGA29588.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|323247623|gb|EGA31572.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|323251066|gb|EGA34940.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008282]
gi|323257464|gb|EGA41155.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|323263357|gb|EGA46891.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|323266324|gb|EGA49813.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|323271468|gb|EGA54890.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
gi|363549018|gb|EHL33377.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. LQC 10]
gi|363557030|gb|EHL41241.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB31]
gi|363564401|gb|EHL48454.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB30]
gi|363567853|gb|EHL51850.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. ATCC BAA710]
gi|363576030|gb|EHL59872.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 42N]
gi|363576103|gb|EHL59943.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 4441 H]
gi|366059049|gb|EHN23325.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035278]
gi|366059529|gb|EHN23802.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 80959-06]
gi|366063547|gb|EHN27764.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035318]
gi|366075527|gb|EHN39580.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035320]
gi|366075911|gb|EHN39959.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035321]
gi|366079027|gb|EHN43021.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035327]
gi|366827317|gb|EHN54224.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|372204209|gb|EHP17738.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008286]
Length = 476
Score = 317 bits (811), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 167/431 (38%), Positives = 246/431 (57%), Gaps = 13/431 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
STFL++DYETFG + DRP QFAA+RTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G E FA I +F P T VGYN + FDDE+TR +F+RN +PY
Sbjct: 69 GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADV 188
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+L++ PRLF+++ S R K + A I P +P +++ MF + S +
Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSP 607
P+ HP N+N +I +L D L D + +R+ L K + +P+ ++H+N+ P
Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDLAAVPVKLVHINKCP 308
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYK-INNSDLE 663
V++ L R + N+K + N + K IF + + SD
Sbjct: 309 -VLAQANTLRPEDADRLGINRQHCLDNLKV---LRENPQVRDKVVAIFAEAEPFAASD-- 362
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
N+D +LY+ F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL
Sbjct: 363 -NVDAQLYDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 421
Query: 724 YKELKRWKKYR 734
E +RW ++R
Sbjct: 422 DAEQQRWLEHR 432
>gi|161613258|ref|YP_001587223.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Paratyphi B str. SPB7]
gi|161362622|gb|ABX66390.1| hypothetical protein SPAB_00968 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 476
Score = 317 bits (811), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 167/431 (38%), Positives = 246/431 (57%), Gaps = 13/431 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
STFL++DYETFG + DRP QFAA+RTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G E FA I +F P T VGYN + FDDE+TR +F+RN +PY
Sbjct: 69 GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADV 188
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+L++ PRLF+++ S R K + A I P +P +++ MF + S +
Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSP 607
P+ HP N+N +I +L D L D + +R+ L K + +P+ ++H+N+ P
Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHVAVPVKLVHINKCP 308
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYK-INNSDLE 663
V++ L R + N+K + N + K IF + + SD
Sbjct: 309 -VLAQANTLRPEDADRLGINRQHCLDNLKV---LRENPQVRDKVVAIFAEAEPFAASD-- 362
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
N+D +LY+ F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL
Sbjct: 363 -NVDAQLYDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 421
Query: 724 YKELKRWKKYR 734
E +RW ++R
Sbjct: 422 DAEQQRWLEHR 432
>gi|423121161|ref|ZP_17108845.1| exodeoxyribonuclease I [Klebsiella oxytoca 10-5246]
gi|376395791|gb|EHT08437.1| exodeoxyribonuclease I [Klebsiella oxytoca 10-5246]
Length = 480
Score = 317 bits (811), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 174/471 (36%), Positives = 258/471 (54%), Gaps = 14/471 (2%)
Query: 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKIT 372
FL++DYETFG + DRP QFAAIRTD LN I P + YCK A D+LP P+A +IT IT
Sbjct: 16 FLFHDYETFGTHPALDRPAQFAAIRTDAELNIIGEPEVFYCKLADDYLPQPQAVMITGIT 75
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
PQ G E FA I +F P T VGYN + FDDE++R +F+RN +PY W++
Sbjct: 76 PQEANAKGDNEAAFARRIHDLFTVPKTCIVGYNNVRFDDEVSRNIFYRNFYDPYAWSWQH 135
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRAT 492
+ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N++ H AHDA++DV AT
Sbjct: 136 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTVANDIEHSNAHDAMADVYAT 195
Query: 493 LGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPIC 552
+ +A+L++ PRLF+++ S R K+ + I P +P +++ MF + SL+ P+
Sbjct: 196 IAMAKLVKARQPRLFDYLYSHRNKRKLATLIDVPQMKPLVHVSGMFGAARGNTSLVAPLA 255
Query: 553 IHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIVI 610
HP N+N +I +L D L D + +R+ L K E +PI ++HLN+ P++
Sbjct: 256 WHPDNRNAVIMVDLAGDMTPLLELDADTLRERLYTPKADLGELAAVPIKLVHLNKCPVLA 315
Query: 611 SNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK-INNSDLELNIDEE 669
+ L R + N++ S IF + + SD N+D +
Sbjct: 316 QD-NTLRPQDADRLGINRQRCLDNLQLLRSHPQVREKAVAIFAEAEPFVPSD---NVDTQ 371
Query: 670 LYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKR 729
LYN F S D + I+ P+ L ++ F +K++E L+F YRARNF +L E +R
Sbjct: 372 LYNGFFSDADRAAMKIVLETEPRNLPALDITFADKRIERLLFNYRARNFPGSLDEAEQQR 431
Query: 730 WKKYRISRFYNKKNNLY--NINMFYLEIESLLKKANEHDTKILNALLMYGK 778
W ++R F Y + M Y + E +K + L AL Y +
Sbjct: 432 WLEHRREVFTPAFLQAYADELQMLYQQHEQDSEKLAQ-----LKALWQYAQ 477
>gi|433550169|ref|ZP_20506213.1| Exodeoxyribonuclease I [Yersinia enterocolitica IP 10393]
gi|431789304|emb|CCO69253.1| Exodeoxyribonuclease I [Yersinia enterocolitica IP 10393]
Length = 476
Score = 317 bits (811), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 167/477 (35%), Positives = 261/477 (54%), Gaps = 15/477 (3%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
N TF +DYETFG DRP QFA +RTD+ N I+ P+++YC PA D+LP P A +
Sbjct: 5 NKQPTFYIHDYETFGQRPALDRPAQFAGVRTDLDFNIIEEPLVVYCAPADDYLPQPEAVM 64
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
IT ITPQ L NG+ E +FA I + F PGT +GYN I FDDE++R +F+RN +PY
Sbjct: 65 ITGITPQHALANGVNEAEFARQIHQAFNVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYA 124
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
W+ SRWDL++V++A Y L P GI WP G PSFKLEHL+ N + H AHDA+S
Sbjct: 125 YSWQGGNSRWDLLDVMRACYALRPEGIVWPENEEGLPSFKLEHLTKANGVEHLHAHDAMS 184
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ +A+ ++ PRLF+++ R K + A I P +++ MF + S
Sbjct: 185 DVYATIAMAKRVKQAQPRLFDYLYQHRSKHKINALIDITDMTPLVHVSGMFGAARGNTSW 244
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLN 604
+ P+ HP NKN +I +L D L D + +R+ L ++ +P+ ++H+N
Sbjct: 245 VAPLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTHRDKLSAQDAAVPLKLVHIN 304
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF-LDYKINNSDLE 663
+ P++ +L N R D +N++ + N + +K+ L + +
Sbjct: 305 KCPVLAPAKTLLPEN-ADRLGIDRQRCLQNLQL---LRQNPQVREKVVALFAEAEPFAVS 360
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
++D +LYN F S D + I+ + L ++ F++ +LE L+F +RARN+ TL+
Sbjct: 361 DDVDAQLYNGFFSDADRATMKIILQTEAQNLPALDLTFQDPRLEALLFRFRARNYPNTLT 420
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK--ILNALLMYGK 778
E +RW ++R +K + + L++E+L + + K +L AL Y +
Sbjct: 421 DSEQQRWLEHRREALNPEK-----VQDYVLQLEALYNQYEDDKEKLALLKALFDYAR 472
>gi|197263773|ref|ZP_03163847.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|197242028|gb|EDY24648.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
Length = 476
Score = 316 bits (810), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 167/431 (38%), Positives = 246/431 (57%), Gaps = 13/431 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
STFL++DYETFG + DRP QFAA+RTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G E FA I +F P T VGYN + FDDE+TR +F+RN +PY
Sbjct: 69 GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTRANGIEHSNAHDAMADV 188
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+L++ PRLF+++ S R K + A I P +P +++ MF + S +
Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSP 607
P+ HP N+N +I +L D L D + +R+ L K + +P+ ++H+N+ P
Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCP 308
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYK-INNSDLE 663
V++ L R + N+K + N + K IF + + SD
Sbjct: 309 -VLAQANTLRPEDADRLGINRQHCLDNLKV---LRENPQVRDKVVAIFAEAEPFAASD-- 362
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
N+D +LY+ F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL
Sbjct: 363 -NVDAQLYDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 421
Query: 724 YKELKRWKKYR 734
E +RW ++R
Sbjct: 422 DAEQQRWLEHR 432
>gi|433329614|ref|ZP_20404308.1| exonuclease I, partial [Escherichia coli J96]
gi|432344307|gb|ELL38970.1| exonuclease I, partial [Escherichia coli J96]
Length = 427
Score = 316 bits (810), Expect = 5e-83, Method: Composition-based stats.
Identities = 162/426 (38%), Positives = 245/426 (57%), Gaps = 13/426 (3%)
Query: 315 WYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKITPQ 374
++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT ITPQ
Sbjct: 1 FHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQ 60
Query: 375 FCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKNNC 434
G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W+++
Sbjct: 61 EARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDN 120
Query: 435 SRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRATLG 494
SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV AT+
Sbjct: 121 SRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIA 180
Query: 495 LARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPICIH 554
+A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P+ H
Sbjct: 181 MAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLAWH 240
Query: 555 PMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIVISN 612
P N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P V++
Sbjct: 241 PENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP-VLAQ 299
Query: 613 LKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLELNIDE 668
L R + N+K + N + +K+ + SD N+D
Sbjct: 300 ANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD---NVDA 353
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
+LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y E +
Sbjct: 354 QLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQ 413
Query: 729 RWKKYR 734
RW ++R
Sbjct: 414 RWLEHR 419
>gi|417384027|ref|ZP_12149532.1| Exodeoxyribonuclease 1 [Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
gi|353610151|gb|EHC63217.1| Exodeoxyribonuclease 1 [Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
Length = 476
Score = 316 bits (810), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 167/431 (38%), Positives = 245/431 (56%), Gaps = 13/431 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
STFL++DYETFG + DRP QFAA+RTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G E FA I +F P T VGYN + FDDE+TR +F+RN +PY
Sbjct: 69 GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADV 188
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+L++ PRLF+++ S R K + A I P +P +++ MF + S +
Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSP 607
P+ HP N+N +I +L D L D + +R+ L K + +P+ ++H+N+ P
Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCP 308
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYK-INNSDLE 663
V++ L R N+K + N + K IF + + SD
Sbjct: 309 -VLAQANTLRPEDADRLGIKRQHCLDNLKV---LRENPQVRDKVVAIFAEAEPFAASD-- 362
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
N+D +LY+ F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL
Sbjct: 363 -NVDAQLYDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 421
Query: 724 YKELKRWKKYR 734
E +RW ++R
Sbjct: 422 DAEQQRWLEHR 432
>gi|350531561|ref|ZP_08910502.1| exonuclease I [Vibrio rotiferianus DAT722]
Length = 473
Score = 316 bits (810), Expect = 6e-83, Method: Composition-based stats.
Identities = 163/468 (34%), Positives = 268/468 (57%), Gaps = 14/468 (2%)
Query: 306 LHNGNS-TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPR 364
+H N TF ++DYET+G + +DRP QFA +RTD N I P+++YC+P D+LP P
Sbjct: 1 MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPE 60
Query: 365 ACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLIN 424
A LIT ITPQ + G+PE +F + I KP T S+GYN+I FDDE+TR+ +RN I+
Sbjct: 61 AALITGITPQKAMQEGLPEPEFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFID 120
Query: 425 PYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHD 484
PY W+N SRWDL++V++A + L P G+ WP + G PSFKLEHLS N + H AHD
Sbjct: 121 PYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFPSFKLEHLSVANGIEHSNAHD 180
Query: 485 ALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSY 544
A++DV AT+ +A+ I+ P+LF++ S+R K+ + + P +++ M + Y
Sbjct: 181 AMADVIATIEMAKKIKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY 240
Query: 545 ISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIH 602
S + P+ HP N N +IT +L DP+ L ++++ L K++ + +P+ ++H
Sbjct: 241 TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLPPVPVKLVH 300
Query: 603 LNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL 662
LN+ PI ++ K L++ D N+ + + + I +K+ + I
Sbjct: 301 LNKCPI-LAPAKTLTAENAESIGIDRQQCLTNL---ALLRQHPEIREKLINLFSIEREYE 356
Query: 663 ELN-IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
+ N +D +LY+ F S D + I+R P L+ ++ F++K+++ L+F YRAR++ T
Sbjct: 357 KSNDVDTQLYDGFFSPADRAAMDIIRETDPTNLAALDIEFDDKRIKPLLFRYRARHYSST 416
Query: 722 LSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI 769
L +E +RW ++ F ++ I + L +E+L+ + + KI
Sbjct: 417 LDDQEQRRWAQHCREVFESQ------IEEYMLNLENLVHEHESDEKKI 458
>gi|335044458|ref|ZP_08537483.1| exonuclease I [Methylophaga aminisulfidivorans MP]
gi|333787704|gb|EGL53588.1| exonuclease I [Methylophaga aminisulfidivorans MP]
Length = 482
Score = 316 bits (809), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 170/483 (35%), Positives = 264/483 (54%), Gaps = 10/483 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
T W+DYET G + R DRP QFA IRTD LN I P+M+YCKPA DFLP P+A LIT I
Sbjct: 3 TLYWHDYETSGTDPRYDRPLQFAGIRTDEDLNIIGEPLMIYCKPANDFLPHPQAALITGI 62
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+ E +F + I +PGT VGYN++ FDDE TRF +RN + Y REW+
Sbjct: 63 TPQKAQQEGLTEAEFIARIHAELAEPGTCGVGYNSLRFDDEFTRFSLFRNFYDAYAREWQ 122
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD+I++++ L P GI WP ++GKPSF+LEHL+ NN+ AHDAL DV A
Sbjct: 123 NGNSRWDIIDMVRLTRALRPKGINWPDHDDGKPSFRLEHLTAANNIEQIGAHDALVDVYA 182
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+N P+LF+++ R+K ++ + P +++ M+ S++ +L+ P+
Sbjct: 183 TIEIAKLIKNAQPKLFDYVYQNRRKNHIAPLLNIHDRTPVIHVSRMYPSEYCGTALVVPL 242
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLNRSPI 608
P N N +I ++ +DP + D ++ L E I + IH+N+ P+
Sbjct: 243 AKDPTNPNGVIVYDCRYDPIDLIELDAETLQQRLFTPSADLAEGIQRPALKTIHINKCPV 302
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
V+ L+ + R D +++ ++ + + +IF D + D
Sbjct: 303 VVP-AATLNDDAAKRLDIDRAQHQRHLDMLNAAGDLSEKLSQIFTPKPF---DPVADPDA 358
Query: 669 ELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY+ F S D K+ ++RS P L ++ FE+ +L E++F YRARN+ +L+ E
Sbjct: 359 SLYSGGFFSDNDKRKMELIRSAEPDMLKTLSIPFEDSRLAEMLFRYRARNWPGSLTEDEQ 418
Query: 728 KRWKKYRISRFYNK-KNNLYNINMFYLEI-ESLLKKANEHDTKILNALLMYGKIDGSSCI 785
+W +YR R ++ + + N + FY + E+ + E K+L L Y +
Sbjct: 419 DQWLQYRQQRLADETPDAILNFSRFYSALAEAKQQDLPEQKQKVLADLTHYASQLAAELG 478
Query: 786 YRA 788
Y+A
Sbjct: 479 YQA 481
>gi|418513165|ref|ZP_13079396.1| exonuclease I [Salmonella enterica subsp. enterica serovar Pomona
str. ATCC 10729]
gi|366082062|gb|EHN45999.1| exonuclease I [Salmonella enterica subsp. enterica serovar Pomona
str. ATCC 10729]
Length = 476
Score = 316 bits (809), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 167/431 (38%), Positives = 245/431 (56%), Gaps = 13/431 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
STFL++DYETFG + DRP QFAA+RTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G E FA I +F P T VGYN + FDDE+TR +F+RN +PY
Sbjct: 69 GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADV 188
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+L++ PRLF+++ S R K + A I P +P +++ MF + S +
Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSP 607
P+ HP N+N +I +L D L D +R+ L K + +P+ ++H+N+ P
Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSETLRERLYTAKADLGDHAAVPVKLVHINKCP 308
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYK-INNSDLE 663
V++ L R + N+K + N + K IF + + SD
Sbjct: 309 -VLAQANTLRPEDADRLGINRQHCLDNLKV---LRENPQVRDKVVAIFAEAEPFAASD-- 362
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
N+D +LY+ F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL
Sbjct: 363 -NVDAQLYDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 421
Query: 724 YKELKRWKKYR 734
E +RW ++R
Sbjct: 422 DAEQQRWLEHR 432
>gi|241663633|ref|YP_002981993.1| DNA polymerase I [Ralstonia pickettii 12D]
gi|240865660|gb|ACS63321.1| DNA polymerase I [Ralstonia pickettii 12D]
Length = 937
Score = 316 bits (809), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 146/270 (54%), Positives = 201/270 (74%), Gaps = 4/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++ALPD+RN + FP GA+YG + MLRKL +Y A Y ACIFDAKGK FR+
Sbjct: 11 VDGSSYLYRAYHALPDLRNGEGFPTGAIYGIVNMLRKLRNDYPAKYSACIFDAKGKTFRD 70
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LYP+YK R MP +L QI IH+ V+A+GWPIL+I+GVEADDVIGTLA++A + +
Sbjct: 71 DLYPAYKEHRAPMPDDLRAQIEPIHEAVRALGWPILVIEGVEADDVIGTLAERA-AREGV 129
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
+ I+ST DKD+AQLV++ + L+N N+ D + ++FGV PE+IVDY SLIGD DN+
Sbjct: 130 RTIVSTGDKDLAQLVNDHVTLVNTMTNETLDPAGVQAKFGVPPERIVDYLSLIGDTVDNV 189
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV K+GPKTAVK L ++ SL+N+I A IKGV+G+NLR L WLPK +++LT+K DCD
Sbjct: 190 PGVPKVGPKTAVKWLTEFGSLDNVIARAGEIKGVVGENLRNTLEWLPKGRELLTVKLDCD 249
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L+K + + ++LI +D+ L+ F++Y
Sbjct: 250 LSKEVPTF-DALIDGGEDKSKLVDFFSRYG 278
>gi|302339540|ref|YP_003804746.1| exodeoxyribonuclease I [Spirochaeta smaragdinae DSM 11293]
gi|301636725|gb|ADK82152.1| Exodeoxyribonuclease I [Spirochaeta smaragdinae DSM 11293]
Length = 484
Score = 316 bits (809), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 162/443 (36%), Positives = 256/443 (57%), Gaps = 10/443 (2%)
Query: 315 WYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKITPQ 374
WYD ETFG + R DR QFA +RTD LN + P++LYCK D++PDP+ACLIT ITP+
Sbjct: 7 WYDLETFGTHPRLDRIAQFAGLRTDEALNELGEPLVLYCKITQDYVPDPKACLITGITPE 66
Query: 375 FCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKNNC 434
L G+ E +F I + F++PG+ G+N+I FDDE R +RNL++P+ REW
Sbjct: 67 ETLRKGLSERRFIERINEEFMQPGSCVAGFNSIAFDDEFIRATLYRNLMDPFRREWAGGN 126
Query: 435 SRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRATLG 494
SRWDL++V++A L P GITWP NG+P+F+LE L+ N L H+ AHDALSDVRAT+
Sbjct: 127 SRWDLLDVLRAARDLRPQGITWPEGENGRPTFRLEKLTEANALPHQNAHDALSDVRATIA 186
Query: 495 LARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPICIH 554
+ARL+R P++F+++ R K + I RPF + + M S+++ Y S++ P+ H
Sbjct: 187 MARLLREKQPKIFSYLYRGRIKDHARQLIDLHKRRPFLHTSAMLSNEYGYTSILAPVAPH 246
Query: 555 PMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKN---SFKED-IPISMIHLNRSPIVI 610
P N+N ++ ++L DP+ + ++++R L F + S +E I + IH+NRSP V+
Sbjct: 247 PANQNAILCFDLRQDPEPLIERSVDELR-RLIFAPSEELSLEESRIRLIPIHINRSP-VL 304
Query: 611 SNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDEEL 670
+ L L + R D+ K A+ + + + +KI ++ + +++ + + E+
Sbjct: 305 APLSTLDPDTAKRLGLDVTLCGKR---AAKLAEASLLTQKIMEVFRRDEAEIRRDPELEI 361
Query: 671 YN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKR 729
Y+ F S D ++ R +SP+ + F +++L EL + + RN E L E K+
Sbjct: 362 YSGGFFSDADRQRMERFRELSPEAMLKRRGDFYDRRLPELAWRFVCRNHSEILDENERKK 421
Query: 730 WKKYRISRFYNKKNNLYNINMFY 752
WK + R L N F+
Sbjct: 422 WKSFCAGRLLFPPERLINDFAFF 444
>gi|365107971|ref|ZP_09336113.1| exodeoxyribonuclease I [Citrobacter freundii 4_7_47CFAA]
gi|363640888|gb|EHL80316.1| exodeoxyribonuclease I [Citrobacter freundii 4_7_47CFAA]
Length = 474
Score = 315 bits (808), Expect = 8e-83, Method: Composition-based stats.
Identities = 169/432 (39%), Positives = 247/432 (57%), Gaps = 13/432 (3%)
Query: 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKIT 372
FL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT IT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDNDFNIIGEPEVFYCKPADDYLPQPEAVLITGIT 69
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
PQ G E FA+ I +F P T +GYN + FDDE+TR + +RN +PY W+N
Sbjct: 70 PQEAREKGENEAAFAARIHALFTVPKTCILGYNNVRFDDEVTRNILYRNFYDPYAWSWQN 129
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRAT 492
+ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV AT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHTNAHDAMADVYAT 189
Query: 493 LGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPIC 552
+ +A+L+++ PRLF+++ S R K + A I P +P +++ MF + S + P+
Sbjct: 190 IAMAQLVKSRQPRLFDYLYSHRNKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 249
Query: 553 IHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIVI 610
HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P V+
Sbjct: 250 WHPENRNAVIMVDLAGDISPLLELDSDALRERLYTSKADLGDNPAVPVKLVHINKCP-VL 308
Query: 611 SNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYK-INNSDLELNI 666
+ L R + N+K + N +I K IF D + SD N+
Sbjct: 309 AQANTLRPEDADRLGINRQHCLDNLKV---LRENPHIRDKVVAIFADAEPFTPSD---NV 362
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL E
Sbjct: 363 DAQLYNGFFSDADRAAMKIVLETEPRNLPALDISFVDKRIEKLLFNYRARNFPGTLDEAE 422
Query: 727 LKRWKKYRISRF 738
+RW +R F
Sbjct: 423 QQRWLDHRRQVF 434
>gi|432704805|ref|ZP_19939907.1| exodeoxyribonuclease I [Escherichia coli KTE171]
gi|431243034|gb|ELF37423.1| exodeoxyribonuclease I [Escherichia coli KTE171]
Length = 475
Score = 315 bits (808), Expect = 9e-83, Method: Composition-based stats.
Identities = 174/474 (36%), Positives = 259/474 (54%), Gaps = 20/474 (4%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHLLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+N SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QNRNSRWDLLDVMRACYALRPDGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ P+LF+++ + R K ++ I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKAQQPKLFDYLYAYRGKNKLMTLIDVPQMKPLVHVSGMFGAWRGNTSWIAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K + +PI ++HLN+ P
Sbjct: 249 LAWHPDNRNAVIMVDLAGDIAPLLELDADTLRERLYTPKAELGDSSPVPIKLVHLNKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + +N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKL---LRDNPQVREKVVAIFAEAEPFVASD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F + ++E+L+F +RARNF TL
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFADPRIEKLLFNFRARNFPGTLDE 421
Query: 725 KELKRWKKYRISRFYNKKNNLY--NINMFYLEIESLLKKANEHDTKILNALLMY 776
E +RW ++R F + Y + M Y + E N +L AL Y
Sbjct: 422 NEQQRWLEHRRQIFTPEFLQAYAQQLEMLYGQYE-----GNNEKLSLLKALYQY 470
>gi|389783308|ref|ZP_10194741.1| exonuclease I [Rhodanobacter spathiphylli B39]
gi|388434822|gb|EIL91751.1| exonuclease I [Rhodanobacter spathiphylli B39]
Length = 481
Score = 315 bits (808), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 171/479 (35%), Positives = 262/479 (54%), Gaps = 19/479 (3%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
TF W+DYET G + RRDRP QFA IRT + L I P+M Y KP + P P AC+IT
Sbjct: 2 QTFFWHDYETSGADPRRDRPLQFAGIRTSMALEIIGEPVMFYGKPPREMPPHPDACMITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ +G+ E FA+ + + +PGT VGYN++ FDDE TR M +RN PY REW
Sbjct: 62 ITPQQAELDGVNEADFAARVHEELARPGTCGVGYNSLRFDDEFTRQMLYRNFHEPYGREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+N SRWDLI++++ L P GI WP + +G PSFKLEHL+ N L+ ++AHDALSDV
Sbjct: 122 ENGNSRWDLIDLVRMCQALRPEGIVWPTREDGSPSFKLEHLARANGLNQERAHDALSDVY 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
A + LARLIR PRL+++ +LR+K+ V + P +++ + + ++++ P
Sbjct: 182 ALIDLARLIRVRQPRLWDWHYALRRKQKVFELLDVVNMTPLVHVSSRYPASRHCLTVVAP 241
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP +I ++L DP +L D ++I D + + E IP+ + N +P
Sbjct: 242 LAAHPSRAGEVIVYDLATDPAAWLALDEDEIADRIFTPRADLPEGVERIPLRTVRANHAP 301
Query: 608 IVISNLKVLSSNLMFRYKFDL-NC-AFKNIKCASSILNNTYIWKKIFLDYKINNSDLELN 665
++ L VL + R + DL C A +++ A++ L +++F ++L
Sbjct: 302 -ALAPLSVLQGVDLARLQLDLPRCQAHRDMLHAAAGLPEKL--RRVFQ----RAAELPPP 354
Query: 666 IDEELY---NNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
D EL F+ D LA +R+ P +L + F F + + EL+F YRARN+ ETL
Sbjct: 355 EDPELALYGGGFLPDADKRLLAQVRATPPAELGSRPFPFRDARYPELLFRYRARNWPETL 414
Query: 723 SYKELKRWKKYRISRFYNKKNNLYNINM--FYLEIESLLKKANEHDT-KILNALLMYGK 778
E RW+++R +R + L + + ++ I L D +L+ L +G+
Sbjct: 415 DADERLRWERFRQARL-TRHTPLTGLTLDDYFARIAKLRGDPQAQDRLGLLDQLQAWGE 472
>gi|389796637|ref|ZP_10199688.1| exonuclease I [Rhodanobacter sp. 116-2]
gi|388448162|gb|EIM04147.1| exonuclease I [Rhodanobacter sp. 116-2]
Length = 481
Score = 315 bits (808), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 168/477 (35%), Positives = 254/477 (53%), Gaps = 15/477 (3%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
TF W+DYET G + RRDRP QFA IRT L + P+M Y KP + P P ACLIT
Sbjct: 2 QTFFWHDYETSGADPRRDRPLQFAGIRTTPELEIVGEPVMFYGKPPLEMPPHPDACLITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ GI E +FA+ + + PGT VGYN++ FDDE TR M +RN PY REW
Sbjct: 62 ITPQQAEREGINEAEFAARVHEQLAAPGTCGVGYNSLRFDDEFTRQMLYRNFYEPYGREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+N SRWDLI++++ L P GI WP + +G PSFKLEHL+ N L+ ++AHDALSDV
Sbjct: 122 ENGNSRWDLIDLVRMCQALRPEGIVWPTREDGSPSFKLEHLASANQLTQERAHDALSDVH 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
A + LARLIR PRL+++ LR+K+ V + P +++ + + ++++ P
Sbjct: 182 ALIELARLIRVRQPRLWDWYYGLRRKQKVFELLDVVNMTPLVHVSSRYPASRHCLAVIAP 241
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP +I ++L DP +L D ++I D + + ED IP+ + N +P
Sbjct: 242 LAAHPSRAGEVIVYDLATDPATWLALDEDEIADRIFTARTDLPEDVERIPLRTVRANHAP 301
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
++ L VL + R + DL + + ++ +++F + L D
Sbjct: 302 -ALAPLSVLQGADLDRLQLDLARCQAHREVLHAVDGLAEKLRRVFQ----RAAALPPPED 356
Query: 668 EELY---NNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
EL F+ D LA +R+ P++L F F + + EL+F YRARN+ ETL
Sbjct: 357 PELALYGGGFLPDADKRLLAQVRATPPQELGTRAFPFRDPRYPELLFRYRARNWPETLDA 416
Query: 725 KELKRWKKYRISRFYNKKNNLYNINM--FYLEIESLLKKANEHDT-KILNALLMYGK 778
E RW+ +R +R + L + + ++ + L + D +L+ L +G+
Sbjct: 417 DEHARWENFRRARL-TRHTPLTGLTLDDYFARLGELRRDPAVQDKLPLLDQLQAWGE 472
>gi|299066168|emb|CBJ37351.1| DNA polymerase I (POL I) [Ralstonia solanacearum CMR15]
Length = 959
Score = 315 bits (808), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 144/270 (53%), Positives = 199/270 (73%), Gaps = 4/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++ALPD+RN + FP GA+YG + MLRKL +Y A Y AC+FDAKGK FR+
Sbjct: 27 VDGSSYLYRAYHALPDLRNGEGFPTGAIYGIVNMLRKLRNDYPAKYSACVFDAKGKTFRD 86
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LYP+YK R MP +L QI IH+ V+A+GWPIL++ GVEADDVIGTLA++A T+ +
Sbjct: 87 DLYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILMVDGVEADDVIGTLAERA-TREGV 145
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
+ ++ST DKD+AQLV++ + L+N +N+ D ++++FGV P KIVDY SLIGD DN+
Sbjct: 146 RTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGVLAKFGVPPGKIVDYLSLIGDTVDNV 205
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV K+GPKTAVK L +Y SL+++I A IKGV+G+NLR L+WLPK +++LT+KTDCD
Sbjct: 206 PGVPKVGPKTAVKWLGEYGSLDSVIARAGEIKGVVGENLRNTLDWLPKGRELLTVKTDCD 265
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L + + +LI +D L+ F +Y
Sbjct: 266 LATEVPTF-AALIDGGEDRAKLVDFFGRYG 294
>gi|167583897|ref|ZP_02376285.1| DNA polymerase I [Burkholderia ubonensis Bu]
Length = 917
Score = 315 bits (808), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 142/270 (52%), Positives = 199/270 (73%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L LQ+ IH V+A+GWP+L+++GVEADDVIGTLA++A +H +
Sbjct: 75 DLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAREA-ERHGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
KV++ST DKD+AQLV++++ L+N N+I DR +I++FGV PE+I+DY +LIGD DN+
Sbjct: 134 KVVVSTGDKDLAQLVTDRVTLVNTMTNEILDRDGVIAKFGVPPERIIDYLALIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L QY+SL+ +I +A IKGV+G NLR AL++LP +K++T++T CD
Sbjct: 194 PGVEKCGPKTAVKWLTQYDSLDGVIEHAGEIKGVVGDNLRRALDFLPLGRKLVTVETACD 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L ++ SI +L + LL +F +Y
Sbjct: 254 LAPHLESIEATLATDGEARDLLRDIFARYG 283
>gi|149190027|ref|ZP_01868305.1| exonuclease I [Vibrio shilonii AK1]
gi|148836193|gb|EDL53152.1| exonuclease I [Vibrio shilonii AK1]
Length = 473
Score = 315 bits (808), Expect = 1e-82, Method: Composition-based stats.
Identities = 167/469 (35%), Positives = 263/469 (56%), Gaps = 12/469 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
T+ ++DYET+G++ +DR QFA +RTD N I P+++YC+P D+LP P A LIT I
Sbjct: 7 TYFFFDYETWGVSPAKDRACQFAGVRTDENFNIIGEPLVIYCQPPSDYLPSPEAALITGI 66
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C G+ E +F + I P T S+GYN+I FDDE+TR+ +RN I+PY W+
Sbjct: 67 TPQLCQEKGLSEPEFIAKIHHELATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQ 126
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++A + L P GI WP + G SFKLEHLS N + H+ AHDA++DV A
Sbjct: 127 NGNSRWDLLDVMRACHALRPEGIEWPENDEGFTSFKLEHLSVANGIEHENAHDAMADVIA 186
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+ ++ P+LF++ S+R+K+ + + P +++ M + Y S + PI
Sbjct: 187 TIELAKKVKAAQPKLFDYFYSMRQKRKLNELVDIVNMTPLMHVSGMLGKECQYTSWVVPI 246
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L DP+ L D++ + L + + D +P+ +IHLN+ PI
Sbjct: 247 AWHPTNQNAVIVADLAKDPQPLLDLDVDALHQRLYTRHDELAPDEKPVPLKLIHLNKCPI 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++ D KN+ + I + I +K+ Y I + + ++D
Sbjct: 307 -LAPAKTLTAENAESIGIDREQCLKNL---ALIKQHPEIREKLIGLYSIEREFENDGDVD 362
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LY+ F S D + I+R P LS ++ F + ++E L+F YRARNF +L E
Sbjct: 363 TQLYSGFFSPADKSAMDIIRETDPNNLSALDISFSDPRIEPLLFRYRARNFPWSLDETEQ 422
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMY 776
RW + F+ + Y +NM L E +++E IL ++ Y
Sbjct: 423 ARWANH-CREFFESRIESYMLNMENLVHE---HESDEKKLAILKSVYRY 467
>gi|423109202|ref|ZP_17096897.1| exodeoxyribonuclease I [Klebsiella oxytoca 10-5243]
gi|376383396|gb|EHS96124.1| exodeoxyribonuclease I [Klebsiella oxytoca 10-5243]
Length = 474
Score = 315 bits (808), Expect = 1e-82, Method: Composition-based stats.
Identities = 162/432 (37%), Positives = 246/432 (56%), Gaps = 13/432 (3%)
Query: 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKIT 372
FL++DYETFG + DRP QFAAIRTD LN + P + YC+ A D+LP P+A ++T IT
Sbjct: 10 FLFHDYETFGTSPSLDRPSQFAAIRTDEDLNVVGEPEVFYCRLADDYLPQPQAVMVTGIT 69
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
PQ G E FA + +F P T VGYN + FDDE+TR +F+RN +PY W++
Sbjct: 70 PQEANAKGDNEAAFARRVHDLFTVPKTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRAT 492
+ SRWDL++V++A Y L P GI WP + G PSF+LEHL+ N + H AHDA++DV AT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDEGLPSFRLEHLTVANGIEHSNAHDAMADVYAT 189
Query: 493 LGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPIC 552
+ +A+L++ PRLF+++ + R K+ + I P +P +++ MF + SL+ P+
Sbjct: 190 IAMAKLVKTQQPRLFDYLYAHRNKRKLATLIDVPQIKPLVHVSGMFGAARGNTSLVAPLA 249
Query: 553 IHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIVI 610
HP N+N +I +L D L D + +R+ L K+ + +PI ++HLN+ P V+
Sbjct: 250 WHPDNRNAVIMVDLAGDIAPLLDLDADALRERLYTPKSELGDLAAVPIKLVHLNKCP-VL 308
Query: 611 SNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINN----SDLELNI 666
+ L R ++ +N A + N + +K+ Y SD N+
Sbjct: 309 AQQNTLRPQDADRLGINIQRCLEN---AQRLRANPQVREKVVAIYAEAEPFVPSD---NV 362
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
D +LYN F S D + I+ P+ L ++ F +K++E L+F YRARN+ TL E
Sbjct: 363 DAQLYNGFFSDADRAAMKIILETEPRNLPALDITFADKRIERLLFNYRARNYPGTLDEAE 422
Query: 727 LKRWKKYRISRF 738
+RW ++R F
Sbjct: 423 QQRWLEHRRQVF 434
>gi|429122033|ref|ZP_19182635.1| Exodeoxyribonuclease I [Cronobacter sakazakii 680]
gi|426323483|emb|CCK13372.1| Exodeoxyribonuclease I [Cronobacter sakazakii 680]
Length = 475
Score = 315 bits (807), Expect = 1e-82, Method: Composition-based stats.
Identities = 171/472 (36%), Positives = 257/472 (54%), Gaps = 14/472 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAA+RTD I P + YCKPA D+LP P A LIT I
Sbjct: 9 TFLFHDYETFGKSPSLDRPAQFAALRTDENFTVIGEPDVFYCKPADDYLPQPEAVLITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G E +FA I +F P T VGYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQVARARGENEAEFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N+ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 NDNSRWDLLDVMRACYALRPEGIVWPENSDGLPSFRLEHLTVANGIEHANAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PR+F+++ + R K+ + I +P +++ MF + S + P+
Sbjct: 189 TIAMAQLVKTRQPRMFDYLYTYRSKQKLATLIDTVQMKPLVHVSGMFGAWRGNTSWIAPV 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIV 609
HP N+N +I +L D L + + +R+ L K + + +P+ ++ LN+ P V
Sbjct: 249 AWHPDNRNAVIVVDLAGDISPLLELNADDLRERLYTPKAALGDASAVPVKLVQLNKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDLELNIDE 668
++ L R D N+K +F D +D N+D
Sbjct: 308 LAQANTLRPEDAERLGIDRQHCLNNLKVLRDSPQVREKLVALFADAPPFPPTD---NVDA 364
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
+LY+ F S D + I+ P+ L ++ F +K++E+L+F YRARNF TLS +E
Sbjct: 365 QLYDGFFSDADRAAMRIVLETPPQNLPALDITFVDKRIEKLLFNYRARNFPGTLSEQEQA 424
Query: 729 RWKKYRISRFYNKKNNLY--NINMFYLEIESLLKKANEHDTKILNALLMYGK 778
RW +R F + Y + M Y + ES ++ T +L AL Y +
Sbjct: 425 RWLAHRRDVFTPEFLQAYAQELEMLYNQYES-----DKEKTALLKALYQYAQ 471
>gi|187921421|ref|YP_001890453.1| DNA polymerase I [Burkholderia phytofirmans PsJN]
gi|187719859|gb|ACD21082.1| DNA polymerase I [Burkholderia phytofirmans PsJN]
Length = 913
Score = 315 bits (807), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 146/270 (54%), Positives = 200/270 (74%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R+ D P GALYG I MLR++ K A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRSPDGNPTGALYGMINMLRRMRKEVTAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
YP YKA R MP +L QI IH V+A+GWP+L+I GVEADDVIGTL+ QA K +
Sbjct: 75 DWYPDYKANRPSMPDDLSRQIEPIHVAVRALGWPLLMIDGVEADDVIGTLSTQA-EKRGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLVS+ + LIN N+ DR ++++FGV PE+IVDY SLIGD DN+
Sbjct: 134 NVIVSTGDKDLAQLVSDHVTLINTMTNETLDRAGVLAKFGVPPERIVDYLSLIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTA+K L Q++SL+ I+ +A+ IKG +G NLR AL++LP KK++T++ +CD
Sbjct: 194 PGVEKCGPKTAIKWLTQFDSLDGIVAHADEIKGAVGDNLRRALDFLPMAKKLVTVERNCD 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
+T +IVSI ESL +P+ + L ++F ++
Sbjct: 254 MTDHIVSIEESLQSRPESREELREVFTRHG 283
>gi|147788|gb|AAA19938.1| exonuclease I [Escherichia coli]
Length = 466
Score = 315 bits (807), Expect = 1e-82, Method: Composition-based stats.
Identities = 165/431 (38%), Positives = 243/431 (56%), Gaps = 16/431 (3%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ +L I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFAL---------IDVPHMKPLVHVSGMFGAWRGNTSWVAP 239
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 240 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 298
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK-INNSDLELNID 667
V++ L R + N+K IF + + SD N+D
Sbjct: 299 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQEREKVVAIFAEAEPFTPSD---NVD 355
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y E
Sbjct: 356 AQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQ 415
Query: 728 KRWKKYRISRF 738
+RW ++R F
Sbjct: 416 QRWLEHRRQVF 426
>gi|423196380|ref|ZP_17182963.1| hypothetical protein HMPREF1171_00995 [Aeromonas hydrophila SSU]
gi|404632464|gb|EKB29079.1| hypothetical protein HMPREF1171_00995 [Aeromonas hydrophila SSU]
Length = 471
Score = 315 bits (807), Expect = 1e-82, Method: Composition-based stats.
Identities = 168/467 (35%), Positives = 261/467 (55%), Gaps = 9/467 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYETFG++ +DRP QFA IRTD N I P+++YCKP D+LP+P ACLIT I
Sbjct: 8 TFYFHDYETFGISPAKDRPAQFAGIRTDGDFNLIGEPLVIYCKPPADYLPEPEACLITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + +G+ E F I + F PGT +GYN+I FDDE+TR+ +RN +PY W+
Sbjct: 68 TPQKAMKDGLCEADFIRQIHEQFATPGTCVLGYNSIRFDDEVTRYTLYRNFYDPYAYAWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD++++++A Y L P GI W + GKPSF+LE L+ N ++H AHDALSDV A
Sbjct: 128 NGNSRWDILDMLRACYALRPQGIEWAFDEEGKPSFRLEKLTVANGVAHANAHDALSDVLA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +ARL++ P+LF+++ LR K V A I +P +++ MFS S + P+
Sbjct: 188 TIEMARLVKKAQPKLFDYLFDLRNKNKVKALIDVVTMKPLVHVSGMFSPWQGCASWVSPL 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIV 609
HP N+N +I +L DP + +IR+ L KK + IP+ ++H+N+ P V
Sbjct: 248 AWHPSNQNAVIMVDLTRDPTPLIELTSEEIRERLYTKKEELGDLAGIPVKLVHINKCP-V 306
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDEE 669
++ L++ + D K++ + ++F ++D D +
Sbjct: 307 LAPAATLTAERADQLGIDREQCRKSLDLLRAHPEVREKLVEVFNQEFAGSNDGA--PDTQ 364
Query: 670 LYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKR 729
LY F D + ++R+ L F F + +L E++F YRARN+ TLS E KR
Sbjct: 365 LYAGFFGHGDKSTMDLVRATPADLLGEREFAFTDPRLPEMLFRYRARNWPHTLSETEQKR 424
Query: 730 WKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMY 776
W+ + S +++++ Y + LE + + N+ + IL +L Y
Sbjct: 425 WRLH-CSDYFSRRLPDY---VPRLEALAEQNQGNDRNFAILKSLYHY 467
>gi|145299357|ref|YP_001142198.1| exodeoxyribonuclease I [Aeromonas salmonicida subsp. salmonicida
A449]
gi|418357275|ref|ZP_12959975.1| exodeoxyribonuclease I [Aeromonas salmonicida subsp. salmonicida
01-B526]
gi|142852129|gb|ABO90450.1| exodeoxyribonuclease I [Aeromonas salmonicida subsp. salmonicida
A449]
gi|356689533|gb|EHI54071.1| exodeoxyribonuclease I [Aeromonas salmonicida subsp. salmonicida
01-B526]
Length = 475
Score = 315 bits (807), Expect = 1e-82, Method: Composition-based stats.
Identities = 168/471 (35%), Positives = 263/471 (55%), Gaps = 17/471 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYETFG++ +DRP QFA IRTD N I P+++YCKP D+LPDP ACLIT I
Sbjct: 12 TFYFHDYETFGISPAKDRPSQFAGIRTDADFNIIGEPLVIYCKPPADYLPDPEACLITGI 71
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + +G+ E F I + F P T +GYN+I FDDE+TR+ +RN +PY W+
Sbjct: 72 TPQKAMKDGLCEADFIRQIHEQFATPNTCVLGYNSIRFDDEVTRYTLYRNFYDPYAYAWQ 131
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD++++++A Y L P GI W + GKPSF+LE L+ N +SH AHDALSDV A
Sbjct: 132 NGNSRWDILDMLRACYALRPEGIEWAFDEEGKPSFRLEKLTVANGVSHANAHDALSDVLA 191
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ P+LF ++ +LR K V A I +P +++ MFS +S + P+
Sbjct: 192 TIEMAKLVKKAQPKLFEYLFTLRNKNKVKALIDVVTMKPLVHVSGMFSPWQGCVSWISPL 251
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIV 609
HP N+N +I +L DP + +IR+ L +K+ + IP+ ++H+N+ V
Sbjct: 252 AWHPTNQNAVIMVDLTRDPTPLIELSSEEIRERLYTRKDELGDLAAIPVKLVHINKCR-V 310
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLE----LN 665
++ L+ D K++ + + + +K+ ++ N + E +
Sbjct: 311 LAPAATLTPERADELTIDREQCRKSLNLLRA---HPEVREKLV---EVFNQEFEGSNDPD 364
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
D +LY F D + ++R+ L F F + +L E++F YRARN+ TLS
Sbjct: 365 PDTQLYAGFFGHGDKSTMDLVRATPADLLGEREFAFTDARLPEMLFRYRARNWPHTLSEA 424
Query: 726 ELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMY 776
E KRW+ + S +++++ Y LE + + NE + IL +L Y
Sbjct: 425 EQKRWRLH-CSDYFSRRLPDYAPR---LEALAEQNQGNERNFAILKSLYRY 471
>gi|17546949|ref|NP_520351.1| DNA polymerase I [Ralstonia solanacearum GMI1000]
gi|17429250|emb|CAD15937.1| probable dna polymeraseIprotein [Ralstonia solanacearum GMI1000]
Length = 946
Score = 315 bits (807), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 143/270 (52%), Positives = 199/270 (73%), Gaps = 4/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++ALPD+RN + FP GA+YG + MLRKL +Y A Y AC+FDAKGK FR+
Sbjct: 13 VDGSSYLYRAYHALPDLRNGEGFPTGAIYGIVNMLRKLRNDYPAKYSACVFDAKGKTFRD 72
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LYP+YK R MP +L QI IH+ V+A+GWPIL++ GVEADDVIGTLA++A + +
Sbjct: 73 ELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILMVDGVEADDVIGTLAERA-AREGI 131
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
+ ++ST DKD+AQLV++ + L+N +N+ D ++++FGV P KIVDY SLIGD DN+
Sbjct: 132 RTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGVLAKFGVPPGKIVDYLSLIGDTVDNV 191
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV K+GPKTAVK L +Y SL+++I A IKGV+G+NLR L+WLPK +++LT+KTDCD
Sbjct: 192 PGVPKVGPKTAVKWLGEYGSLDSVIARAGEIKGVVGENLRNTLDWLPKGRELLTVKTDCD 251
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L + + E+L+ +D L+ F +Y
Sbjct: 252 LATEVPTF-EALVDGGEDRAKLVDFFGRYG 280
>gi|119946086|ref|YP_943766.1| exodeoxyribonuclease I [Psychromonas ingrahamii 37]
gi|119864690|gb|ABM04167.1| Exodeoxyribonuclease I subunit C [Psychromonas ingrahamii 37]
Length = 486
Score = 315 bits (807), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 172/428 (40%), Positives = 248/428 (57%), Gaps = 9/428 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
T W+DYETFGLN DRP QFA IRTD+ LN I P YC+P D+LP+P ACLIT I
Sbjct: 18 TLYWHDYETFGLNPGTDRPAQFAGIRTDLDLNIISEPDEWYCRPPNDYLPNPEACLITGI 77
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L G+ E +F ++I + F + T VGYN I FDDEITRF +RN +PY+REWK
Sbjct: 78 TPQRALQKGMVESEFIALINQRFSQKNTCVVGYNNIRFDDEITRFTLYRNFRDPYQREWK 137
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N CSRWD+I++++A Y L P GI WP N PSF+LE L+ N L+H++AHDA+SDV A
Sbjct: 138 NGCSRWDIIDLVRACYALRPEGINWPVDENDAPSFRLELLTKENGLAHQQAHDAMSDVYA 197
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ +P+L+++ LRKK V+A++ P +++ MF + S + PI
Sbjct: 198 TIAMAKLIKETHPKLYDYFFGLRKKNNVMAQLKLGSNTPVVHVSGMFPALQGCASYVMPI 257
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLNRSPI 608
HP NKN +I +L D I +I+ YL E I I +IH+N+ PI
Sbjct: 258 TQHPSNKNAVIVVDLNKDLSGLATLSIEQIQTYLYTPSIDLPEGIERPAIKLIHINKCPI 317
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
I+ K L+ + D +++ S+ +K+F+ + S +++E
Sbjct: 318 -IAPAKTLTEERADQLGIDRKQCRRSLDFLSNQPELAEKLQKVFI--QETPSTENKSVEE 374
Query: 669 ELYN-NFISKKDN-LKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
LY+ F+S D L + S P L N F FE+ +L L++ YRARN ++L E
Sbjct: 375 MLYSGGFLSAADKALSEEVCNSTWP-ALGNKEFNFEDDRLGILLWHYRARNAPDSLDVAE 433
Query: 727 LKRWKKYR 734
++W ++R
Sbjct: 434 QEKWARHR 441
>gi|237732065|ref|ZP_04562546.1| exonuclease I [Citrobacter sp. 30_2]
gi|226907604|gb|EEH93522.1| exonuclease I [Citrobacter sp. 30_2]
Length = 474
Score = 315 bits (807), Expect = 1e-82, Method: Composition-based stats.
Identities = 169/432 (39%), Positives = 246/432 (56%), Gaps = 13/432 (3%)
Query: 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKIT 372
FL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT IT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDNDFNIIGEPEVFYCKPADDYLPQPEAVLITGIT 69
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
PQ G E FA+ I +F P T +GYN + FDDE+TR + +RN +PY W+N
Sbjct: 70 PQEAREKGENEAAFAARIHALFTVPKTCILGYNNVRFDDEVTRNILYRNFYDPYAWSWQN 129
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRAT 492
+ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV AT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHTNAHDAMADVYAT 189
Query: 493 LGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPIC 552
+ +A+L+++ PRLF+++ S R K + A I P +P +++ MF + S + P+
Sbjct: 190 IAMAQLVKSRQPRLFDYLYSHRNKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 249
Query: 553 IHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIVI 610
HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P V+
Sbjct: 250 WHPENRNAVIMVDLAGDISPLLELDSDALRERLYTSKADLGDNPAVPVKLVHINKCP-VL 308
Query: 611 SNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYK-INNSDLELNI 666
+ L R + N+K + N I K IF D + SD N+
Sbjct: 309 AQANTLRPEDADRLGINRQHCLDNLKV---LRENPQIRDKVVAIFADAEPFTPSD---NV 362
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL E
Sbjct: 363 DAQLYNGFFSDADRAAMKIVLETEPRNLPALDISFVDKRIEKLLFNYRARNFPGTLDEAE 422
Query: 727 LKRWKKYRISRF 738
+RW +R F
Sbjct: 423 QQRWLDHRRQVF 434
>gi|300717468|ref|YP_003742271.1| exodeoxyribonuclease I [Erwinia billingiae Eb661]
gi|299063304|emb|CAX60424.1| Exodeoxyribonuclease I [Erwinia billingiae Eb661]
Length = 475
Score = 315 bits (807), Expect = 1e-82, Method: Composition-based stats.
Identities = 168/468 (35%), Positives = 263/468 (56%), Gaps = 19/468 (4%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFA IRTD+ N I P + YC+PA D+LP P A +IT I
Sbjct: 9 TFLFHDYETFGKSPSLDRPAQFAGIRTDMDFNIIGEPEVFYCQPADDYLPQPEAVMITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ GI E F I +F +P T VGYN + FDDE+TR + +RN +PY W+
Sbjct: 69 TPQLAKAKGISEAAFTKRIHALFSEPNTCIVGYNNVRFDDEVTRNLLYRNFYDPYGWAWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
+ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N +SH+ AHDA+SDV A
Sbjct: 129 HGNSRWDLLDVMRACYALRPEGIAWPENDDGLPSFRLEHLTKANGVSHENAHDAMSDVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRL++F+ + R K + A I P +P +I+ MF + S + P+
Sbjct: 189 TIAMAKLVKEKQPRLYDFLFTHRNKNKITALIDIPQMKPLVHISGMFGAFRGNTSWIAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP+NKN LIT +L D L D + +R+ L ++ ++ +P+ ++H+N+ P+V
Sbjct: 249 AWHPVNKNALITCDLAGDITPLLELDADTLRERLYTRREELGDNAPVPVKLMHINKCPVV 308
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK-----INNSDLEL 664
+ L R D N+ + + + + +K+ + +SD
Sbjct: 309 -APANTLRPEDAERLGIDRKRCLDNL---AILRQHPEVREKVVALFAEAEPFAGSSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
+D +LY+ F S D + I++ P+ L ++ F + ++E+L+F +RARN+ TL
Sbjct: 362 -VDAQLYDGFFSDADRNTMNIIQQTLPENLPALDLTFNDARIEKLLFRFRARNYPGTLDE 420
Query: 725 KELKRWKKYRISRFYNKKNNLY--NINMFYLEIESLLKKANEHDTKIL 770
E RW ++R ++ Y + M + + E + K E D K+L
Sbjct: 421 AEQTRWLQHRREALNPERVQSYVQELEMLFNQYEGDIGK--EKDLKML 466
>gi|254228381|ref|ZP_04921808.1| exonuclease family [Vibrio sp. Ex25]
gi|262394467|ref|YP_003286321.1| exodeoxyribonuclease I [Vibrio sp. Ex25]
gi|151939187|gb|EDN58018.1| exonuclease family [Vibrio sp. Ex25]
gi|262338061|gb|ACY51856.1| exodeoxyribonuclease I [Vibrio sp. Ex25]
Length = 473
Score = 315 bits (807), Expect = 1e-82, Method: Composition-based stats.
Identities = 165/471 (35%), Positives = 267/471 (56%), Gaps = 20/471 (4%)
Query: 306 LHNGNS-TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPR 364
+H N TF ++DYET+G N +DRP QFA +RTD N I P+++YC+P D+LP P
Sbjct: 1 MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNVIGEPLVMYCQPPADYLPSPE 60
Query: 365 ACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLIN 424
A LIT ITPQ + G+ E +F + I KP T S+GYN+I FDDE+TR+ +RN I+
Sbjct: 61 AALITGITPQKTVQEGLSEPEFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFID 120
Query: 425 PYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHD 484
PY W+N SRWDL++V++A + L P G+ WP +G SFKLEHLS N + H AHD
Sbjct: 121 PYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFTSFKLEHLSVANGIEHSNAHD 180
Query: 485 ALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSY 544
A++DV AT+ +A+ ++ P+LF++ S+R+K+ + + P +++ M + Y
Sbjct: 181 AMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNELVDIVNMTPLMHVSGMLGRECQY 240
Query: 545 ISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIH 602
S + P+ HP N N +IT +L DP+ L ++ + L K+ E +P+ ++H
Sbjct: 241 TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVH 300
Query: 603 LNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF----LDYKIN 658
LN+ PI ++ K L++ D N+ + + + I +K+ ++ K +
Sbjct: 301 LNKCPI-LAPAKTLTAENAESIGIDRQQCLANL---ALLRQHPEIREKLISLFSVERKFD 356
Query: 659 NSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNF 718
SD ++D +LY+ F S D + I+R P L+ ++ F++K+++ L+F YRARNF
Sbjct: 357 KSD---DVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARNF 413
Query: 719 IETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI 769
TL +E +RW + F ++ I + L +E+L+ + + KI
Sbjct: 414 PGTLDEQEQRRWALHCREVFESQ------IEEYMLNLENLVHEHESDEKKI 458
>gi|168236215|ref|ZP_02661273.1| exodeoxyribonuclease I (Exonuclease I) [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|194733944|ref|YP_002115153.1| exonuclease I [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|194709446|gb|ACF88667.1| exodeoxyribonuclease I [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197290623|gb|EDY29978.1| exodeoxyribonuclease I (Exonuclease I) [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
Length = 476
Score = 315 bits (806), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 166/431 (38%), Positives = 246/431 (57%), Gaps = 13/431 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+TFL++DYETFG + DRP QFAA+RTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 QNTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G E FA I +F P T VGYN + FDDE+TR +F+RN +PY
Sbjct: 69 GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADV 188
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+L++ PRLF+++ S R K + A I P +P +++ MF + S +
Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSP 607
P+ HP N+N +I +L D L D + +R+ L K + +P+ ++H+N+ P
Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHVAVPVKLVHINKCP 308
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYK-INNSDLE 663
V++ L R + N+K + N + K IF + + SD
Sbjct: 309 -VLAQANTLRPEDADRLGINRQHCLDNLKV---LRENPQVRDKVVAIFAEAEPFAASD-- 362
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
N+D +LY+ F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL
Sbjct: 363 -NVDAQLYDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 421
Query: 724 YKELKRWKKYR 734
E +RW ++R
Sbjct: 422 DAEQQRWLEHR 432
>gi|339999847|ref|YP_004730730.1| exodeoxyribonuclease I [Salmonella bongori NCTC 12419]
gi|339513208|emb|CCC30958.1| exodeoxyribonuclease I [Salmonella bongori NCTC 12419]
Length = 476
Score = 315 bits (806), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 175/477 (36%), Positives = 261/477 (54%), Gaps = 22/477 (4%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+T+L++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 QNTYLFHDYETFGTHPALDRPAQFAAIRTDSDFNIIGEPEVFYCKPADDYLPQPGAVLIT 68
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G E FA I +F P T VGYN + FDDE+TR +F+RN +PY
Sbjct: 69 GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADV 188
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+L+++ PRLF+++ S R K + A I P +P +I+ MF + S +
Sbjct: 189 YATIAMAQLVKSRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHISGMFGAWRGNTSWVA 248
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSP 607
P+ HP N+N +I +L D L D N +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 PLAWHPDNRNAVIMVDLAGDISPLLELDSNALRERLYTAKADLGDNAAVPVKLVHINKCP 308
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDLELNI 666
V++ L R + N+K + N + K+ + + N+
Sbjct: 309 -VLAQANTLRPEDADRLGINRQHCLDNLKV---LRENPQVRDKVVAIFAEAEPFTAPDNV 364
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
D +LY+ F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL E
Sbjct: 365 DAQLYDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAE 424
Query: 727 LKRWKKYR----ISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK--ILNALLMYG 777
RW ++R F + N E++ L ++ E TK +L AL Y
Sbjct: 425 QLRWLEHRRQVLTPEFLQQYAN---------ELQMLSQQYAEDKTKLGLLKALWQYA 472
>gi|417511769|ref|ZP_12176289.1| Exodeoxyribonuclease 1 [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
gi|353641957|gb|EHC86539.1| Exodeoxyribonuclease 1 [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
Length = 476
Score = 315 bits (806), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 167/431 (38%), Positives = 245/431 (56%), Gaps = 13/431 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
STFL++DYETFG + DRP QFAA+RTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G E FA I +F P T VGYN + FDDE+TR +F+RN +PY
Sbjct: 69 GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADV 188
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+L++ PRLF+++ S R K + A I P +P +++ MF + S +
Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSP 607
P+ HP N N +I +L D L D + +R+ L K + +P+ ++H+N+ P
Sbjct: 249 PLAWHPENCNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCP 308
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYK-INNSDLE 663
V++ L R + N+K + N + K IF + + SD
Sbjct: 309 -VLAQANTLRPEDADRLGINRQHCLDNLKV---LRENPQVRDKVVAIFAEAEPFAASD-- 362
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
N+D +LY+ F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL
Sbjct: 363 -NVDAQLYDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 421
Query: 724 YKELKRWKKYR 734
E +RW ++R
Sbjct: 422 DAEQQRWLEHR 432
>gi|423140642|ref|ZP_17128280.1| exonuclease [Salmonella enterica subsp. houtenae str. ATCC
BAA-1581]
gi|379053196|gb|EHY71087.1| exonuclease [Salmonella enterica subsp. houtenae str. ATCC
BAA-1581]
Length = 474
Score = 314 bits (805), Expect = 2e-82, Method: Composition-based stats.
Identities = 165/429 (38%), Positives = 241/429 (56%), Gaps = 13/429 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAA+RTD N I P + YCKPA D+LP P A LIT I
Sbjct: 9 TFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G E FA I +F P T VGYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQEAREKGENEATFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF+++ S R K + A I P +P +++ MF + S + P+
Sbjct: 189 TIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWIAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R+ L K + +PI ++H+N+ P V
Sbjct: 249 AWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPIKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLELN 665
++ L R N+K + N + K+ + SD N
Sbjct: 308 LAQANALRPEDADRLGIHRQHCLDNLKV---LRENPQVRDKVVAIFAEAEPFAASD---N 361
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LY+ F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL
Sbjct: 362 VDAQLYDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDA 421
Query: 726 ELKRWKKYR 734
E +RW +R
Sbjct: 422 EQQRWLAHR 430
>gi|183599505|ref|ZP_02960998.1| hypothetical protein PROSTU_02983 [Providencia stuartii ATCC 25827]
gi|188021751|gb|EDU59791.1| exonuclease domain protein [Providencia stuartii ATCC 25827]
Length = 475
Score = 314 bits (805), Expect = 2e-82, Method: Composition-based stats.
Identities = 175/472 (37%), Positives = 264/472 (55%), Gaps = 16/472 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF +DYETFG + DRP QFA +RTD+ N ID P + YC P D+LP P A +IT I
Sbjct: 9 TFFIHDYETFGKHPALDRPAQFAGVRTDLDFNIIDEPEVFYCAPTDDYLPQPEAVMITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L G+ E +FA I + F +P T +GYN I FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQLALAQGVNEAEFAKRIHQQFSQPNTCIMGYNNIRFDDEVTRNIFYRNFYDPYAYSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
SRWDL++ ++A + L P GI WP + G PS +LEHL+ N ++H+ AHDA+SDV A
Sbjct: 129 QGNSRWDLLDTVRACFALRPEGIIWPENDEGLPSMRLEHLTKANGIAHENAHDAMSDVLA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PR+FN+ LR K V I P +++ MF + SYISL+ P+
Sbjct: 189 TINMAKLLKAAQPRMFNYFYQLRNKNKVNQLIDIVDMTPLVHVSGMFGALRSYISLVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N +I +L D + + +R+ L K + +PI ++H+N+ PI+
Sbjct: 249 AWHPDNRNAVIMCDLAADISPLVNLPVETLRERLYTPKTELDGELPVPIKLVHINKCPIL 308
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELN-IDE 668
K L R D + +N++ + + I K+ + E N +D
Sbjct: 309 APE-KTLRIEDAERTGVDRDLCLRNLEI---LRKHPDIRHKVIEIFAQAQPFEEPNDVDA 364
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
++Y+ F S D + I+R K L ++ FE+ +++EL F Y+ARN+ TLSY E +
Sbjct: 365 QIYSGFFSSSDRSTMDIIRETPEKNLPALDLTFEDPRMKELFFRYKARNYPSTLSYDEQQ 424
Query: 729 RWKKYRISRFYNKKNNLYNINMFYLE-IESLL--KKANEHDTKILNALLMYG 777
RW ++R R Y ++ L M Y++ IESL+ + + K L AL+ Y
Sbjct: 425 RWLQHR--RDYFTESRL----MEYMQSIESLMIEHQNDVERCKQLKALVNYA 470
>gi|343498731|ref|ZP_08736750.1| exonuclease I [Vibrio tubiashii ATCC 19109]
gi|418479891|ref|ZP_13048961.1| exonuclease I [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
gi|342823956|gb|EGU58538.1| exonuclease I [Vibrio tubiashii ATCC 19109]
gi|384572539|gb|EIF03055.1| exonuclease I [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
Length = 474
Score = 314 bits (805), Expect = 2e-82, Method: Composition-based stats.
Identities = 169/472 (35%), Positives = 269/472 (56%), Gaps = 18/472 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYET+G + +DRP QFA +RTD+ N I P+++YC+P D+LP P A LIT I
Sbjct: 8 TFFFFDYETWGTSPAKDRPCQFAGVRTDMDFNIIGEPLVIYCQPPADYLPAPEAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+ E +F + I + P TIS+GYN+I FDDE+TR+ +RN I+PY W+
Sbjct: 68 TPQTAETQGLSEPEFIAKIHEQLATPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++A Y L P G+ WP + G SFKLEHLS N + H+ AHDA++DV A
Sbjct: 128 NGNSRWDLLDVMRACYALRPEGVNWPENDEGFISFKLEHLSVANGIEHENAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+ ++ P+LF++ LS+R K+ + I P +++ M + +Y S + P+
Sbjct: 188 TIEMAKKVKAAQPKLFDYFLSMRHKRKLNELIDIVNMTPLMHVSGMLGKECNYTSWVVPV 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L DP+ L D ++ + L K++ D +P+ +IHLN+ PI
Sbjct: 248 AWHPTNQNAVICVDLAKDPQALLDLDTKQLNERLYTKRSDLAPDELPVPVKLIHLNKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELN-ID 667
++ K L++ + D +N+ + + + + +K+ Y I + N +D
Sbjct: 308 -LAPAKTLTAENAEKIGIDREKCLENL---ALLRKHPEVREKLIGVYGIEREYEKSNDVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY+ F S D + I+R P LS ++ F + ++ L+F YRARNF TL E
Sbjct: 364 SMLYDGFFSPADKAAMNIIRETDPNNLSALDISFSDDRIAPLLFRYRARNFPWTLDESEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK---ILNALLMY 776
+RW + F ++ I + L +E+L+ + +E D K IL ++ Y
Sbjct: 424 QRWATHCRDYFESR------IEDYMLNLENLVHE-HESDQKKIAILKSIYQY 468
>gi|418858886|ref|ZP_13413495.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19470]
gi|418863645|ref|ZP_13418183.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19536]
gi|392831125|gb|EJA86759.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19470]
gi|392833513|gb|EJA89128.1| exonuclease I [Salmonella enterica subsp. enterica serovar Newport
str. CVM 19536]
Length = 476
Score = 314 bits (805), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 166/431 (38%), Positives = 245/431 (56%), Gaps = 13/431 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
STFL++DYETFG + DRP QFAA+RTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G E FA I +F P T VGYN + FDDE+TR +F+RN +PY
Sbjct: 69 GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTQANGIEHSNAHDAMADV 188
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ +A+L++ PRLF+++ S R K + A I P +P +++ MF + S +
Sbjct: 189 YATIAMAQLVKTRQPRLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVA 248
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSP 607
P+ HP N+N +I +L D L D + +R+ L K + +P+ ++H+N+ P
Sbjct: 249 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHVAVPVKLVHINKCP 308
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYK-INNSDLE 663
V++ L R + N+K + N + K IF + + SD
Sbjct: 309 -VLAQANTLRPEDADRLGINRQHCLDNLKV---LRENPQVRDKVVAIFAEAEPFAASD-- 362
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
N+D +LY+ F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL
Sbjct: 363 -NVDAQLYDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 421
Query: 724 YKELKRWKKYR 734
E + W ++R
Sbjct: 422 DAEQQSWLEHR 432
>gi|325981763|ref|YP_004294165.1| DNA polymerase I [Nitrosomonas sp. AL212]
gi|325531282|gb|ADZ26003.1| DNA polymerase I [Nitrosomonas sp. AL212]
Length = 916
Score = 314 bits (805), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 145/271 (53%), Positives = 203/271 (74%), Gaps = 7/271 (2%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++ALPD+RN +N P GA++G + MLR+L+K+Y A Y AC+FDAKGK FR+
Sbjct: 7 VDGSSYLYRAYHALPDLRNRNNEPTGAIHGVLNMLRRLHKDYHADYSACVFDAKGKTFRD 66
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
+YP YKA R MP L +QI +H ++A+GWP+LII GVEADDVIGTLA+QAV + ++
Sbjct: 67 EIYPEYKAHRPSMPMELAVQIEPLHACIRAMGWPMLIIDGVEADDVIGTLARQAV-EADM 125
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
+ IIST DKD+AQLV + I+L+N +N+I D +++++FGV PE+++DY L+GD SDN+
Sbjct: 126 RCIISTGDKDIAQLVDSHISLVNTMSNEILDEASVLAKFGVPPERMLDYLMLVGDTSDNV 185
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV K+GPKTAVK L QY SL+NII +A+ IKG IG NLR AL+W ++++TIK D D
Sbjct: 186 PGVHKVGPKTAVKWLTQYGSLDNIIAHADEIKGAIGDNLRTALDWFDTARQLITIKCDVD 245
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYNI 1047
L I L LQP+D + L +L+ + ++
Sbjct: 246 LPIKIT----DLALQPQDTEQLARLYEQLDM 272
>gi|421845733|ref|ZP_16278885.1| exonuclease I [Citrobacter freundii ATCC 8090 = MTCC 1658]
gi|411772874|gb|EKS56457.1| exonuclease I [Citrobacter freundii ATCC 8090 = MTCC 1658]
gi|455646076|gb|EMF25119.1| exonuclease I [Citrobacter freundii GTC 09479]
Length = 474
Score = 314 bits (805), Expect = 2e-82, Method: Composition-based stats.
Identities = 168/432 (38%), Positives = 246/432 (56%), Gaps = 13/432 (3%)
Query: 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKIT 372
FL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT IT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDNDFNIIGEPEVFYCKPADDYLPQPEAVLITGIT 69
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
PQ G E FA+ I +F P T +GYN + FDDE+TR + +RN +PY W+N
Sbjct: 70 PQEAREKGENEAAFAARIHALFTVPKTCILGYNNVRFDDEVTRNILYRNFYDPYAWSWQN 129
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRAT 492
+ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV AT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHANAHDAMADVYAT 189
Query: 493 LGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPIC 552
+ +A+L+++ PRLF+++ S R K + A + P +P +++ MF + S + P+
Sbjct: 190 IAMAQLVKSRQPRLFDYLYSHRNKHKLAALVDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 249
Query: 553 IHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIVI 610
HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P V+
Sbjct: 250 WHPENRNAVIMVDLAGDISPLLELDSDALRERLYTSKADLGDNPAVPVKLVHINKCP-VL 308
Query: 611 SNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYK-INNSDLELNI 666
+ L R + N+K + N I K IF D + SD N+
Sbjct: 309 AQANTLRPEDADRLGINRQHCLDNLKV---LRENPQIRDKVVAIFADAEPFTPSD---NV 362
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL E
Sbjct: 363 DAQLYNGFFSDADRAAMKIVLETEPRNLPALDISFVDKRIEKLLFNYRARNFPGTLDEAE 422
Query: 727 LKRWKKYRISRF 738
+RW +R F
Sbjct: 423 QQRWLDHRRQVF 434
>gi|386865579|ref|YP_006278527.1| DNA polymerase I [Burkholderia pseudomallei 1026b]
gi|418536800|ref|ZP_13102469.1| DNA polymerase I [Burkholderia pseudomallei 1026a]
gi|385351692|gb|EIF58158.1| DNA polymerase I [Burkholderia pseudomallei 1026a]
gi|385662707|gb|AFI70129.1| DNA polymerase I [Burkholderia pseudomallei 1026b]
Length = 923
Score = 314 bits (805), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 145/270 (53%), Positives = 196/270 (72%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG I MLR++ K+ A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKDVSAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAKQA +H +
Sbjct: 75 DLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAKQA-EQHGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLV++++ LIN N+ DR ++++FGV PE+IVDY SLIGD DN+
Sbjct: 134 NVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L QY SL+ ++ +A IKGV+G NLR AL++LP +K++T++T C+
Sbjct: 194 PGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVVGDNLRRALDFLPLARKLVTVETGCE 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L ++ S SL + L ++F KY
Sbjct: 254 LAPHVESFDASLATDGEGRDALREIFAKYG 283
>gi|254301196|ref|ZP_04968640.1| DNA polymerase I [Burkholderia pseudomallei 406e]
gi|157811158|gb|EDO88328.1| DNA polymerase I [Burkholderia pseudomallei 406e]
Length = 923
Score = 314 bits (805), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 145/270 (53%), Positives = 196/270 (72%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG I MLR++ K+ A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKDVSAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAKQA +H +
Sbjct: 75 DLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAKQA-EQHGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLV++++ LIN N+ DR ++++FGV PE+IVDY SLIGD DN+
Sbjct: 134 NVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L QY SL+ ++ +A IKGV+G NLR AL++LP +K++T++T C+
Sbjct: 194 PGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVVGDNLRRALDFLPLARKLVTVETGCE 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L ++ S SL + L ++F KY
Sbjct: 254 LAPHVESFDASLATDGEGRDALREIFAKYG 283
>gi|429103963|ref|ZP_19165937.1| Exodeoxyribonuclease I [Cronobacter turicensis 564]
gi|426290612|emb|CCJ92050.1| Exodeoxyribonuclease I [Cronobacter turicensis 564]
Length = 491
Score = 314 bits (805), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 170/475 (35%), Positives = 262/475 (55%), Gaps = 14/475 (2%)
Query: 309 GNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLI 368
TFL++DYETFG + DRP QFAA+RTD I P + YCKPA D+LP P A LI
Sbjct: 22 AQPTFLFHDYETFGKSPSLDRPAQFAALRTDENFTVIGEPDVFYCKPADDYLPQPEAVLI 81
Query: 369 TKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYER 428
T ITPQ G E +FA I +F P T VGYN + FDDE+TR +F+RN +PY
Sbjct: 82 TGITPQVARARGENEAEFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAW 141
Query: 429 EWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSD 488
W+N+ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++D
Sbjct: 142 SWQNDNSRWDLLDVMRACYALRPEGIVWPENSDGLPSFRLEHLTVANGIEHANAHDAMAD 201
Query: 489 VRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLM 548
V AT+ +A+L++ PR+F+++ + R K+ + + +P +++ MF + S +
Sbjct: 202 VYATIAMAQLVKTRQPRMFDYLYTYRSKQKLATLVDIVQMKPLVHVSGMFGAWRGNTSWI 261
Query: 549 WPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRS 606
PI HP N+N +I +L D L + + +R+ L K + + +P+ ++HLN+
Sbjct: 262 APIAWHPDNRNAVIVVDLAGDISPLLELNADDLRERLYTPKAALNDASPVPVKLVHLNKC 321
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK-IFLDYKINNSDLELN 665
P V++ L R D N+K + ++ + +K + L + N
Sbjct: 322 P-VLAQANTLRPEDAERLGIDRQRCLDNLKV---LRDSPQVREKLVALFAEAPPFPPTDN 377
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LY+ F S D + I+ P+ L ++ F +K++ +L+F YRARNF TLS +
Sbjct: 378 VDAQLYDGFFSDADRAAMRIVLETPPQNLPALDITFVDKRIGKLLFNYRARNFPGTLSEQ 437
Query: 726 ELKRWKKYRISRFYNKKNNLY--NINMFYLEIESLLKKANEHDTKILNALLMYGK 778
E +RW +R F + Y + M Y + ES ++ T +L AL Y +
Sbjct: 438 EQERWLAHRRDVFTPEFLQTYAQELEMLYNQYES-----DKEKTALLKALYQYAQ 487
>gi|451977563|ref|ZP_21927642.1| exonuclease family [Vibrio alginolyticus E0666]
gi|451929594|gb|EMD77332.1| exonuclease family [Vibrio alginolyticus E0666]
Length = 473
Score = 314 bits (805), Expect = 2e-82, Method: Composition-based stats.
Identities = 165/471 (35%), Positives = 267/471 (56%), Gaps = 20/471 (4%)
Query: 306 LHNGNS-TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPR 364
+H N TF ++DYET+G N +DRP QFA +RTD N I P+++YC+P D+LP P
Sbjct: 1 MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPE 60
Query: 365 ACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLIN 424
A LIT ITPQ + G+ E +F + I KP T S+GYN+I FDDE+TR+ +RN I+
Sbjct: 61 AALITGITPQKTVQEGLSEPEFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFID 120
Query: 425 PYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHD 484
PY W+N SRWDL++V++A + L P G+ WP +G SFKLEHLS N + H AHD
Sbjct: 121 PYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFTSFKLEHLSVANGIEHSNAHD 180
Query: 485 ALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSY 544
A++DV AT+ +A+ ++ P+LF++ S+R+K+ + + P +++ M + Y
Sbjct: 181 AMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNELVDIVNMTPLMHVSGMLGRECQY 240
Query: 545 ISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIH 602
S + P+ HP N N +IT +L DP+ L ++ + L K+ E +P+ ++H
Sbjct: 241 TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVH 300
Query: 603 LNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF----LDYKIN 658
LN+ PI ++ K L++ D N+ + + + I +K+ ++ K +
Sbjct: 301 LNKCPI-LAPAKTLTAENAESIGIDRQQCLANL---ALLRQHPEIREKLISLFSVERKFD 356
Query: 659 NSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNF 718
SD ++D +LY+ F S D + I+R P L+ ++ F++K+++ L+F YRARNF
Sbjct: 357 KSD---DVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARNF 413
Query: 719 IETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI 769
TL +E +RW + F ++ I + L +E+L+ + + KI
Sbjct: 414 PGTLDEQEQRRWALHCREVFESQ------IEEYMLNLENLVHEHESDEKKI 458
>gi|126456399|ref|YP_001076435.1| DNA polymerase I [Burkholderia pseudomallei 1106a]
gi|242312260|ref|ZP_04811277.1| DNA polymerase I [Burkholderia pseudomallei 1106b]
gi|126230167|gb|ABN93580.1| DNA polymerase I [Burkholderia pseudomallei 1106a]
gi|242135499|gb|EES21902.1| DNA polymerase I [Burkholderia pseudomallei 1106b]
Length = 923
Score = 314 bits (805), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 145/270 (53%), Positives = 196/270 (72%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG I MLR++ K+ A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKDVSAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAKQA +H +
Sbjct: 75 DLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAKQA-EQHGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLV++++ LIN N+ DR ++++FGV PE+IVDY SLIGD DN+
Sbjct: 134 NVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L QY SL+ ++ +A IKGV+G NLR AL++LP +K++T++T C+
Sbjct: 194 PGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVVGDNLRRALDFLPLARKLVTVETGCE 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L ++ S SL + L ++F KY
Sbjct: 254 LAPHVESFDASLATDGEGRDALREIFAKYG 283
>gi|323497417|ref|ZP_08102435.1| exonuclease I [Vibrio sinaloensis DSM 21326]
gi|323317500|gb|EGA70493.1| exonuclease I [Vibrio sinaloensis DSM 21326]
Length = 474
Score = 314 bits (804), Expect = 2e-82, Method: Composition-based stats.
Identities = 166/471 (35%), Positives = 269/471 (57%), Gaps = 16/471 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYET+G + +DRP QFA +RTD+ N I +P+++YC+P D+LP P A LIT I
Sbjct: 8 TFFFFDYETWGTSPAKDRPCQFAGVRTDMDFNIIGDPLVIYCQPPSDYLPAPEAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+ E +F + I + P TI++GYN+I FDDE+TR+ +RN I+PY W+
Sbjct: 68 TPQTAQAQGLSEPEFIAKIHEQLAMPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++A Y L P G+ WP + G SFKLEHLS N + H+ AHDA++DV A
Sbjct: 128 NGNSRWDLLDVMRACYALRPEGVEWPENDEGFISFKLEHLSKANGIEHENAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+ I+ P+LF++ LS+R K+ + + P +++ M + +Y S M P+
Sbjct: 188 TIEMAKKIKAAQPKLFDYFLSMRHKRKLNDLVDIVNMTPLMHVSGMLGKECNYTSWMVPL 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L DP+ L D+ ++ L K + ED +P+ ++HLN+ PI
Sbjct: 248 AWHPTNQNAVIMVDLAKDPQPLLDLDVEQLNQRLYTKHSELAEDELPVPVKLVHLNKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELN-ID 667
++ K L++ D + KN+ + + + + +K+ Y I + N +D
Sbjct: 308 -LAPAKTLTAENAETIGIDRDQCLKNL---ALLRQHPEVREKLIGLYSIEREYAKDNDVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY+ F S D + I+R P L+ ++ F + ++ L+F YRARNF +L E
Sbjct: 364 AMLYDGFFSPADKASMDIIRETDPNNLAALDISFNDDRIAPLLFRYRARNFPWSLDESEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLL--KKANEHDTKILNALLMY 776
+RW + F ++ I + L +E+L+ +++E IL ++ Y
Sbjct: 424 QRWANHCREYFESR------IEEYMLNLENLVHEHESDEKKLAILKSVYQY 468
>gi|422013851|ref|ZP_16360469.1| exonuclease I [Providencia burhodogranariea DSM 19968]
gi|414102363|gb|EKT63956.1| exonuclease I [Providencia burhodogranariea DSM 19968]
Length = 475
Score = 314 bits (804), Expect = 2e-82, Method: Composition-based stats.
Identities = 171/472 (36%), Positives = 269/472 (56%), Gaps = 16/472 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF +DYETFG DRP QFA +RTD+ N I+ P + YC P+ D+LP P A +IT I
Sbjct: 9 TFFIHDYETFGQRTALDRPAQFAGVRTDLDFNIIEEPEVFYCAPSDDYLPQPEAVMITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L G+ E +FA I F +P T +GYN I FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQIALAQGVNEAEFAKRIHHAFSQPNTCIMGYNNIRFDDEVTRNIFYRNFYDPYAYSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
SRWDL++ ++A + L P GI WP ++G PS +LEHL+ N ++H+ AHDA+SDV A
Sbjct: 129 QGNSRWDLLDALRACFALRPEGINWPENDDGLPSMRLEHLTKANGVTHENAHDAMSDVLA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PR+F++ LR K V I P +++ MF + SY+SL+ P+
Sbjct: 189 TISMAKLLKAAQPRMFDYFYQLRNKNKVNQLIDIVDMTPLVHVSGMFGALRSYVSLVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N +I +L D + +R+ L K ++ +PI ++H+N+ PI+
Sbjct: 249 AWHPDNRNAVIMCDLAADISPLINLSAQTLRERLYTPKAELGDELPVPIKLVHINKCPIL 308
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL-NIDE 668
K L + R D + +N++ + + I K+ + +EL ++D
Sbjct: 309 APE-KTLRTEDAERTGVDRDMCLRNLEI---LRQHPDIRNKVIEVFAETAPFVELDDVDT 364
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
++Y+ F S D + I+R + L ++ FE+ +++EL F Y+ARNF LSY+E +
Sbjct: 365 KIYSGFFSNSDRSTMDIIRETPVQNLPALDLAFEDPRMKELFFRYKARNFPTILSYEEQQ 424
Query: 729 RWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDT---KILNALLMYG 777
RW ++R R Y ++ L + +IESL+ + +++DT K L AL+ Y
Sbjct: 425 RWLQHR--RDYFTESRLIE---YMQKIESLMVE-HQNDTERCKQLKALVNYA 470
>gi|260598502|ref|YP_003211073.1| exonuclease I [Cronobacter turicensis z3032]
gi|260217679|emb|CBA32024.1| Exodeoxyribonuclease I [Cronobacter turicensis z3032]
Length = 480
Score = 314 bits (804), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 170/475 (35%), Positives = 261/475 (54%), Gaps = 14/475 (2%)
Query: 309 GNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLI 368
TFL++DYETFG + DRP QFAA+RTD I P + YCKPA D+LP P A LI
Sbjct: 11 AQPTFLFHDYETFGKSPSLDRPAQFAALRTDENFTVIGEPDVFYCKPADDYLPQPEAVLI 70
Query: 369 TKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYER 428
T ITPQ G E FA I +F P T VGYN + FDDE+TR +F+RN +PY
Sbjct: 71 TGITPQVARARGENEADFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAW 130
Query: 429 EWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSD 488
W+N+ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++D
Sbjct: 131 SWQNDNSRWDLLDVMRACYALRPEGIVWPENSDGLPSFRLEHLTVANGIEHANAHDAMAD 190
Query: 489 VRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLM 548
V AT+ +A+L++ PR+F+++ + R K+ + + +P +++ MF + S +
Sbjct: 191 VYATIAMAQLVKTRQPRMFDYLYTYRSKQKLATLVDIVQMKPLVHVSGMFGAWRGNTSWI 250
Query: 549 WPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRS 606
PI HP N+N +I +L D L + + +R+ L K + + +P+ ++HLN+
Sbjct: 251 APIAWHPDNRNAVIVVDLAGDISPLLELNADDLRERLYTPKAALNDASPVPVKLVHLNKC 310
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK-IFLDYKINNSDLELN 665
P V++ L R D N+K + ++ + +K + L + N
Sbjct: 311 P-VLAQANTLRPEDAERLGIDRQRCLDNLKV---LRDSPQVREKLVALFAEAPPFPPTDN 366
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LY+ F S D + I+ P+ L ++ F +K++ +L+F YRARNF TLS +
Sbjct: 367 VDAQLYDGFFSDADRAAMRIVLETPPQNLPALDITFVDKRIGKLLFNYRARNFPGTLSEQ 426
Query: 726 ELKRWKKYRISRFYNKKNNLY--NINMFYLEIESLLKKANEHDTKILNALLMYGK 778
E +RW +R F + Y + M Y + ES ++ T +L AL Y +
Sbjct: 427 EQERWLAHRRDVFTPEFLQTYAQELEMLYNQYES-----DKEKTALLKALYQYAQ 476
>gi|167829103|ref|ZP_02460574.1| DNA polymerase I [Burkholderia pseudomallei 9]
gi|418397024|ref|ZP_12970773.1| DNA polymerase I [Burkholderia pseudomallei 354a]
gi|418556619|ref|ZP_13121243.1| DNA polymerase I [Burkholderia pseudomallei 354e]
gi|385366784|gb|EIF72386.1| DNA polymerase I [Burkholderia pseudomallei 354e]
gi|385369563|gb|EIF74880.1| DNA polymerase I [Burkholderia pseudomallei 354a]
Length = 923
Score = 314 bits (804), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 144/270 (53%), Positives = 196/270 (72%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG + MLR++ K+ A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIVNMLRRMRKDVSAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAKQA +H +
Sbjct: 75 DLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAKQA-EQHGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLV++++ LIN N+ DR ++++FGV PE+IVDY SLIGD DN+
Sbjct: 134 NVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L QY SL+ ++ +A IKGV+G NLR AL++LP +K++T++T C+
Sbjct: 194 PGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVVGDNLRRALDFLPLARKLVTVETGCE 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L ++ S SL + L ++F KY
Sbjct: 254 LAPHVESFDASLATDGEGRDALREIFAKYG 283
>gi|157145042|ref|YP_001452361.1| exonuclease I [Citrobacter koseri ATCC BAA-895]
gi|157082247|gb|ABV11925.1| hypothetical protein CKO_00773 [Citrobacter koseri ATCC BAA-895]
Length = 474
Score = 314 bits (804), Expect = 3e-82, Method: Composition-based stats.
Identities = 163/430 (37%), Positives = 246/430 (57%), Gaps = 7/430 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFA+IRTD N I P + YCKPA D+LP P A LIT I
Sbjct: 9 TFLFHDYETFGTHPALDRPAQFASIRTDSDFNIIGEPEVFYCKPADDYLPQPGAVLITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G E FA I +F P T VGYN + FDDE+TR + +RN +PY W+
Sbjct: 69 TPQEARDKGENEADFARRIHSLFTVPKTCVVGYNNVRFDDEVTRNILYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHANAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L+++ PRLF+++ + R K + A I P +P +I+ MF + S + P+
Sbjct: 189 TIAMAQLVKSRQPRLFDYLYTHRNKHKLAALIDVPQMKPLVHISGMFGAWRGNTSWVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P V
Sbjct: 249 AWHPENRNAVIMVDLAGDMSPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY-KINNSDLELNIDE 668
++ L R + N+K + +N + K+ + + N+D
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKV---LRDNPQVRDKVVAIFAEAEPFTPSENVDA 364
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
+LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL E +
Sbjct: 365 QLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDETEQQ 424
Query: 729 RWKKYRISRF 738
RW ++R F
Sbjct: 425 RWLEHRRQVF 434
>gi|76818134|ref|YP_336009.1| DNA polymerase I [Burkholderia pseudomallei 1710b]
gi|254186142|ref|ZP_04892660.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237]
gi|254264752|ref|ZP_04955617.1| DNA polymerase I [Burkholderia pseudomallei 1710a]
gi|76582607|gb|ABA52081.1| DNA polymerase I [Burkholderia pseudomallei 1710b]
gi|157933828|gb|EDO89498.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237]
gi|254215754|gb|EET05139.1| DNA polymerase I [Burkholderia pseudomallei 1710a]
Length = 923
Score = 314 bits (804), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 144/270 (53%), Positives = 196/270 (72%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG + MLR++ K+ A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIVNMLRRMRKDVSAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAKQA +H +
Sbjct: 75 DLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAKQA-EQHGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLV++++ LIN N+ DR ++++FGV PE+IVDY SLIGD DN+
Sbjct: 134 NVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L QY SL+ ++ +A IKGV+G NLR AL++LP +K++T++T C+
Sbjct: 194 PGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVVGDNLRRALDFLPLARKLVTVETGCE 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L ++ S SL + L ++F KY
Sbjct: 254 LAPHVESFDASLATDGEGRDALREIFAKYG 283
>gi|237507804|ref|ZP_04520519.1| DNA polymerase I [Burkholderia pseudomallei MSHR346]
gi|235000009|gb|EEP49433.1| DNA polymerase I [Burkholderia pseudomallei MSHR346]
Length = 923
Score = 314 bits (804), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 144/270 (53%), Positives = 196/270 (72%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG + MLR++ K+ A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIVNMLRRMRKDVSAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAKQA +H +
Sbjct: 75 DLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAKQA-EQHGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLV++++ LIN N+ DR ++++FGV PE+IVDY SLIGD DN+
Sbjct: 134 NVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L QY SL+ ++ +A IKGV+G NLR AL++LP +K++T++T C+
Sbjct: 194 PGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVVGDNLRRALDFLPLARKLVTVETGCE 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L ++ S SL + L ++F KY
Sbjct: 254 LAPHVESFDASLATDGEGRDALREIFAKYG 283
>gi|167907515|ref|ZP_02494720.1| DNA polymerase I [Burkholderia pseudomallei NCTC 13177]
gi|217422462|ref|ZP_03453965.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576]
gi|254184913|ref|ZP_04891502.1| DNA polymerase I [Burkholderia pseudomallei 1655]
gi|184215505|gb|EDU12486.1| DNA polymerase I [Burkholderia pseudomallei 1655]
gi|217394693|gb|EEC34712.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576]
Length = 923
Score = 314 bits (804), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 144/270 (53%), Positives = 196/270 (72%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG + MLR++ K+ A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIVNMLRRMRKDVSAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAKQA +H +
Sbjct: 75 DLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAKQA-EQHGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLV++++ LIN N+ DR ++++FGV PE+IVDY SLIGD DN+
Sbjct: 134 NVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L QY SL+ ++ +A IKGV+G NLR AL++LP +K++T++T C+
Sbjct: 194 PGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVVGDNLRRALDFLPLARKLVTVETGCE 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L ++ S SL + L ++F KY
Sbjct: 254 LAPHVESFDASLATDGEGRDALREIFAKYG 283
>gi|53722791|ref|YP_111776.1| DNA polymerase I [Burkholderia pseudomallei K96243]
gi|134278161|ref|ZP_01764875.1| DNA polymerase I [Burkholderia pseudomallei 305]
gi|52213205|emb|CAH39245.1| DNA polymerase I [Burkholderia pseudomallei K96243]
gi|134249945|gb|EBA50025.1| DNA polymerase I [Burkholderia pseudomallei 305]
Length = 923
Score = 314 bits (804), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 144/270 (53%), Positives = 196/270 (72%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG + MLR++ K+ A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIVNMLRRMRKDVSAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAKQA +H +
Sbjct: 75 DLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAKQA-EQHGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLV++++ LIN N+ DR ++++FGV PE+IVDY SLIGD DN+
Sbjct: 134 NVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L QY SL+ ++ +A IKGV+G NLR AL++LP +K++T++T C+
Sbjct: 194 PGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVVGDNLRRALDFLPLARKLVTVETGCE 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L ++ S SL + L ++F KY
Sbjct: 254 LAPHVESFDASLATDGEGRDALREIFAKYG 283
>gi|254193866|ref|ZP_04900298.1| DNA polymerase I [Burkholderia pseudomallei S13]
gi|169650617|gb|EDS83310.1| DNA polymerase I [Burkholderia pseudomallei S13]
Length = 923
Score = 314 bits (804), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 144/270 (53%), Positives = 196/270 (72%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG + MLR++ K+ A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIVNMLRRMRKDVSAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAKQA +H +
Sbjct: 75 DLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAKQA-EQHGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLV++++ LIN N+ DR ++++FGV PE+IVDY SLIGD DN+
Sbjct: 134 NVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L QY SL+ ++ +A IKGV+G NLR AL++LP +K++T++T C+
Sbjct: 194 PGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVVGDNLRRALDFLPLARKLVTVETGCE 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L ++ S SL + L ++F KY
Sbjct: 254 LAPHVESFDASLATDGEGRDALREIFAKYG 283
>gi|418544112|ref|ZP_13109423.1| DNA polymerase I [Burkholderia pseudomallei 1258a]
gi|418550953|ref|ZP_13115899.1| DNA polymerase I [Burkholderia pseudomallei 1258b]
gi|385350205|gb|EIF56755.1| DNA polymerase I [Burkholderia pseudomallei 1258b]
gi|385350587|gb|EIF57116.1| DNA polymerase I [Burkholderia pseudomallei 1258a]
Length = 923
Score = 314 bits (804), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 144/270 (53%), Positives = 196/270 (72%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG + MLR++ K+ A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIVNMLRRMRKDVSAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAKQA +H +
Sbjct: 75 DLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAKQA-EQHGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLV++++ LIN N+ DR ++++FGV PE+IVDY SLIGD DN+
Sbjct: 134 NVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L QY SL+ ++ +A IKGV+G NLR AL++LP +K++T++T C+
Sbjct: 194 PGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVVGDNLRRALDFLPLARKLVTVETGCE 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L ++ S SL + L ++F KY
Sbjct: 254 LAPHVESFDASLATDGEGRDALREIFAKYG 283
>gi|395231646|ref|ZP_10409932.1| exonuclease I [Citrobacter sp. A1]
gi|424730476|ref|ZP_18159072.1| exodeoxyribonuclease i [Citrobacter sp. L17]
gi|394714632|gb|EJF20548.1| exonuclease I [Citrobacter sp. A1]
gi|422895046|gb|EKU34836.1| exodeoxyribonuclease i [Citrobacter sp. L17]
Length = 474
Score = 313 bits (803), Expect = 3e-82, Method: Composition-based stats.
Identities = 169/432 (39%), Positives = 246/432 (56%), Gaps = 13/432 (3%)
Query: 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKIT 372
FL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT IT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDNDFNIIGEPEVFYCKPADDYLPQPEAVLITGIT 69
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
PQ G E FA+ I +F P T +GYN + FDDE+TR + +RN +PY W+N
Sbjct: 70 PQEAREKGENEAAFAARIHALFTVPKTCILGYNNVRFDDEVTRNILYRNFYDPYAWSWQN 129
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRAT 492
+ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV AT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHANAHDAMADVYAT 189
Query: 493 LGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPIC 552
+ +A+L+++ PRLF ++ S R K ++A I P +P +++ MF + S + P+
Sbjct: 190 IAMAQLVKSRQPRLFEYLYSHRNKHKLVALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 249
Query: 553 IHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIVI 610
HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P V+
Sbjct: 250 WHPENRNAVIMVDLAGDISPLLELDSDALRERLYTSKADLGDNPAVPVKLVHINKCP-VL 308
Query: 611 SNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYK-INNSDLELNI 666
+ L R + N+K + N I K IF D + SD N+
Sbjct: 309 AQANTLRPEDADRLGINRQHCRDNLKV---LRENPQIRDKVVAIFADAEPFTPSD---NV 362
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL E
Sbjct: 363 DAQLYNGFFSDADRAAMKIVLETEPRNLPALDISFVDKRIEKLLFNYRARNFPGTLDEAE 422
Query: 727 LKRWKKYRISRF 738
+RW +R F
Sbjct: 423 QQRWLDHRRQVF 434
>gi|365540044|ref|ZP_09365219.1| exonuclease I [Vibrio ordalii ATCC 33509]
Length = 474
Score = 313 bits (803), Expect = 4e-82, Method: Composition-based stats.
Identities = 169/473 (35%), Positives = 267/473 (56%), Gaps = 20/473 (4%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF + DYET+G+N +DRP QFA +RTD+ N I P+++YC+P D+LP P A LIT I
Sbjct: 8 TFFFLDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPADYLPSPEAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G+PE +F + I + P T S+GYN+I FDDE+TR+ +RN I+PY W+
Sbjct: 68 TPQKAVAQGLPEPEFIAKIHQQLATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++A + L P GI WP + G SFKLEHLS N + H AHDA++DV A
Sbjct: 128 NGNSRWDLLDVMRACHALRPEGINWPENDEGFTSFKLEHLSVANGIEHANAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+ ++ P+LF++ ++R K+ + I P +++ M + Y S + PI
Sbjct: 188 TIELAKKVKAAQPKLFDYFFNMRHKRKLNDLIDIVNMTPLMHVSGMLGRECQYTSWIVPI 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L +P+ + ++ L K+ ED +PI ++HLN+ PI
Sbjct: 248 AWHPTNQNAVIVVDLAKNPQPLIDLSSEELHQRLYTKREELAEDELPVPIKLVHLNKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKN---IKCASSILNNTYIWKKIFLDYKINNSDLELN 665
++ K L++ D + ++ IK I I +YK +SD +
Sbjct: 308 -LAPAKTLTAENADHIGVDRDLCLEHLALIKQYPEIREKLIGLYTIEREYK--HSD---D 361
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LY+ F S D + I+R P L+ ++ F +K++E L+F YRARN+ TLS +
Sbjct: 362 VDTQLYDGFFSPADKAAMEIIRQADPVNLAALDISFSDKRIEPLLFRYRARNYPLTLSDE 421
Query: 726 ELKRWKKYRISRFYNKKNNLYNINMFYLEIESLL--KKANEHDTKILNALLMY 776
E +RW + F + ++ + L +E+L+ ++E IL ++ Y
Sbjct: 422 EQRRWATHCRDYFES------HLGEYMLNLENLVHTHSSDEKKMAILKSVYRY 468
>gi|384227970|ref|YP_005619715.1| exonuclease I [Buchnera aphidicola str. Ak (Acyrthosiphon kondoi)]
gi|345538910|gb|AEO08887.1| exonuclease I [Buchnera aphidicola str. Ak (Acyrthosiphon kondoi)]
Length = 481
Score = 313 bits (802), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 187/439 (42%), Positives = 256/439 (58%), Gaps = 28/439 (6%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL+YDYETFG+N D+P QFA IRTD LN IDNP YC P+ D+LPDP + LIT
Sbjct: 9 STFLFYDYETFGINACLDKPAQFACIRTDTNLNIIDNPYYFYCFPSDDYLPDPCSVLITH 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ+ NG EY F+ I I + T VGYN I FDDEITR +F+RN +PYE W
Sbjct: 69 ITPQYTEKNGSNEYNFSKKIHNILTESNTCIVGYNNINFDDEITRNIFYRNFFDPYEWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
KN SRWD++N+++A Y L P GI WP G PSFKL L+ +NN+ H AHDA+SDV
Sbjct: 129 KNGNSRWDILNLLRACYALRPSGIKWPKNELGLPSFKLSDLTKINNIVHLNAHDAVSDVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLFNF L +RKK + I P YI+ F + +S + P
Sbjct: 189 ATIEMAKLVKQKQPRLFNFFLKIRKKNELYKLIDLKKFEPVIYISSYFGAVRHNMSCILP 248
Query: 551 ICIHPMNKNILITWN-------LLHDPKKFLLNDINKIRDYLCFKKNSFKEDIPISMIHL 603
I H N NILI + L+H KK +D+ F KN F D+ + +++L
Sbjct: 249 IAWHKNNSNILIAIDLFKNINELIHVCKKIYFDDV--------FIKNLF--DLGVVLLYL 298
Query: 604 NRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDY----KINN 659
NR P+ ++ +K++ R F + + I + I N + K I + + KI++
Sbjct: 299 NRCPM-LAPIKIMQKEDYNRLNFHRSSFDEKI---NLIKKNNFFIKNIQIIFSQEKKIHD 354
Query: 660 SDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFI 719
SD N+D E+YN+F + D + I+R+ P L N+NF F + +L+ L+F YRARNF
Sbjct: 355 SD---NVDLEIYNSFFNLYDKKIIKIIRNTKPVFLKNMNFNFHDSRLKNLLFRYRARNFF 411
Query: 720 ETLSYKELKRWKKYRISRF 738
TL+ E K W KY + F
Sbjct: 412 HTLNENEKKIWLKYCMKTF 430
>gi|153833726|ref|ZP_01986393.1| exodeoxyribonuclease I [Vibrio harveyi HY01]
gi|148870005|gb|EDL68965.1| exodeoxyribonuclease I [Vibrio harveyi HY01]
Length = 473
Score = 313 bits (802), Expect = 4e-82, Method: Composition-based stats.
Identities = 162/471 (34%), Positives = 269/471 (57%), Gaps = 20/471 (4%)
Query: 306 LHNGNS-TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPR 364
+H N TF ++DYET+G + +DRP QFA +RTD N I P+++YC+P D+LP P
Sbjct: 1 MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPE 60
Query: 365 ACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLIN 424
A LIT ITPQ + G+PE +F + I KP T S+GYN+I FDDE+TR+ +RN I+
Sbjct: 61 AALITGITPQKAMQEGLPEPEFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFID 120
Query: 425 PYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHD 484
PY W+N SRWDL++V++A + L P G+ WP + G SFKLEHLS N + H AHD
Sbjct: 121 PYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFTSFKLEHLSVANGIEHSNAHD 180
Query: 485 ALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSY 544
A++DV AT+ +A+ ++ P+LF++ S+R K+ + + P +++ M + Y
Sbjct: 181 AMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY 240
Query: 545 ISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIH 602
S + P+ HP N N +IT +L DP+ L ++++ L K++ E +P+ ++H
Sbjct: 241 TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGELLPVPVKLVH 300
Query: 603 LNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF----LDYKIN 658
LN+ PI ++ K L++ D N+ + + + I +K+ ++ +
Sbjct: 301 LNKCPI-LAPAKTLTAENAEVIGIDRQKCLSNL---ALLRQHPEIREKLISLFSIEREFE 356
Query: 659 NSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNF 718
SD ++D +LY+ F S D + I+R P L+ ++ F++K+++ L+F YRAR++
Sbjct: 357 KSD---DVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARHY 413
Query: 719 IETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI 769
TL +E +RW ++ F ++ I + L +E+L+ + + KI
Sbjct: 414 AGTLDEQEQRRWAQHCREVFESQ------IEEYMLNLENLVHEHESDEKKI 458
>gi|187929514|ref|YP_001900001.1| DNA polymerase I [Ralstonia pickettii 12J]
gi|309781710|ref|ZP_07676443.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA]
gi|404396629|ref|ZP_10988423.1| DNA polymerase I [Ralstonia sp. 5_2_56FAA]
gi|187726404|gb|ACD27569.1| DNA polymerase I [Ralstonia pickettii 12J]
gi|308919351|gb|EFP65015.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA]
gi|348610574|gb|EGY60262.1| DNA polymerase I [Ralstonia sp. 5_2_56FAA]
Length = 937
Score = 313 bits (802), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 144/270 (53%), Positives = 202/270 (74%), Gaps = 4/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++ALPD+RN + FP GA+YG + MLRKL +Y A Y ACIFDAKGK FR+
Sbjct: 11 VDGSSYLYRAYHALPDLRNGEGFPTGAIYGIVNMLRKLRNDYPAKYSACIFDAKGKTFRD 70
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LYP+YK R MP +L QI IH+ V+A+GWPIL+++GVEADDVIGTLA++A + +
Sbjct: 71 DLYPAYKEHRAPMPDDLRAQIEPIHEAVRALGWPILVVEGVEADDVIGTLAERA-AREGV 129
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
+ I+ST DKD+AQLV++ + L+N N+ D + ++FGV PE+IVDY SLIGD DN+
Sbjct: 130 RTIVSTGDKDLAQLVNDHVTLVNTMTNETLDPAGVQAKFGVPPERIVDYLSLIGDTVDNV 189
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV K+GPKTAVK L ++ SL+N+I +A IKGV+G+NLR L WLPK +++LT+K DC+
Sbjct: 190 PGVPKVGPKTAVKWLTEFGSLDNVIAHAGEIKGVVGENLRNTLEWLPKGRELLTVKLDCN 249
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L+K + + ++LI +D+ L+ F++Y
Sbjct: 250 LSKEVPTF-DALIDGGEDKSKLVDFFSRYG 278
>gi|402844795|ref|ZP_10893145.1| exodeoxyribonuclease I [Klebsiella sp. OBRC7]
gi|402273227|gb|EJU22434.1| exodeoxyribonuclease I [Klebsiella sp. OBRC7]
Length = 474
Score = 313 bits (802), Expect = 5e-82, Method: Composition-based stats.
Identities = 162/432 (37%), Positives = 245/432 (56%), Gaps = 13/432 (3%)
Query: 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKIT 372
FL++DYETFG + DRP QFAAIRTD LN + P +LYC+ A D+LP P+A ++T IT
Sbjct: 10 FLFHDYETFGTSPSLDRPSQFAAIRTDEDLNIVGEPEVLYCRIADDYLPQPQAVMVTGIT 69
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
PQ G E FA + +F P T VGYN + FDDE+TR +F+RN +PY W++
Sbjct: 70 PQEANARGDNEAAFARRVHDLFTVPKTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRAT 492
+ SRWDL++V++A Y L P GI WP G PSF+LEHL+ N + H AHDA++DV AT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENEEGLPSFRLEHLTVANGIEHSNAHDAMADVYAT 189
Query: 493 LGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPIC 552
+ +A+L++ PRLF+++ + R K+ + I P +P +++ MF + SL+ P+
Sbjct: 190 IAMAKLVKTQQPRLFDYLYAHRNKRKLATLIDVPQIKPLVHVSGMFGAARGNTSLVAPLA 249
Query: 553 IHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIVI 610
HP N+N +I +L D L D + +R+ L K+ + +PI ++HLN+ P V+
Sbjct: 250 WHPDNRNAVIMVDLAGDIAPLLELDADTLRERLYTPKSELGDLPAVPIKLVHLNKCP-VL 308
Query: 611 SNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINN----SDLELNI 666
+ L R ++ N A + N + +K+ + SD N+
Sbjct: 309 AQQNTLRPQDADRLGINIQRCLDN---AQLLRANPQVREKVVAIFAEAEPFVPSD---NV 362
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
D +LYN F S D + I+ P+ L ++ F +K++E L+F YRARN+ TL E
Sbjct: 363 DTQLYNGFFSDADRAAMKIVLETEPRNLPALDITFADKRIERLLFNYRARNYPGTLDEAE 422
Query: 727 LKRWKKYRISRF 738
+RW ++R F
Sbjct: 423 QQRWLEHRRQVF 434
>gi|423103804|ref|ZP_17091506.1| exodeoxyribonuclease I [Klebsiella oxytoca 10-5242]
gi|376385446|gb|EHS98167.1| exodeoxyribonuclease I [Klebsiella oxytoca 10-5242]
Length = 474
Score = 313 bits (801), Expect = 5e-82, Method: Composition-based stats.
Identities = 162/432 (37%), Positives = 244/432 (56%), Gaps = 13/432 (3%)
Query: 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKIT 372
FL++DYETFG + DRP QFAAIRTD LN + P + YC+ A D+LP P+A ++T IT
Sbjct: 10 FLFHDYETFGTSPSLDRPSQFAAIRTDEDLNIVGEPEVFYCRIADDYLPQPQAVMVTGIT 69
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
PQ G E FA + +F P T VGYN + FDDE+TR +F+RN +PY W++
Sbjct: 70 PQEANARGGNEAAFARRVHDLFTVPKTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRAT 492
+ SRWDL++V++A Y L P GI WP G PSF+LEHL+ N + H AHDA++DV AT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENEEGLPSFRLEHLTVANGIEHSNAHDAMADVYAT 189
Query: 493 LGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPIC 552
+ +A+L++ PRLF+++ + R K+ + I P +P +++ MF + SL+ P+
Sbjct: 190 IAMAKLVKTQQPRLFDYLYAHRNKRKLATLIDVPQIKPLVHVSGMFGAARGNTSLVAPLA 249
Query: 553 IHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIVI 610
HP N+N +I +L D L D + +R+ L K+ + +PI ++HLN+ P V+
Sbjct: 250 WHPDNRNAVIMVDLAGDIAPLLELDADTLRERLYTPKSELGDLPAVPIKLVHLNKCP-VL 308
Query: 611 SNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINN----SDLELNI 666
+ L R ++ N A + N + +K+ + SD N+
Sbjct: 309 AQQNTLRPQDADRLGINIQRCLDN---AQLLRANPQVREKVVAIFAEAEPFVPSD---NV 362
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
D +LYN F S D + I+ P+ L ++ F +K++E L+F YRARNF TL E
Sbjct: 363 DTQLYNGFFSDADRAAMKIVLETEPRNLPALDITFADKRIERLLFNYRARNFPGTLDEAE 422
Query: 727 LKRWKKYRISRF 738
+RW ++R F
Sbjct: 423 QQRWLEHRRQVF 434
>gi|352085806|ref|ZP_08953397.1| Exodeoxyribonuclease I [Rhodanobacter sp. 2APBS1]
gi|351681747|gb|EHA64871.1| Exodeoxyribonuclease I [Rhodanobacter sp. 2APBS1]
Length = 481
Score = 313 bits (801), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 171/479 (35%), Positives = 257/479 (53%), Gaps = 19/479 (3%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
TF W+DYET G + RRDRP QFA IRT L + P+M Y KP + P P ACLIT
Sbjct: 2 QTFFWHDYETSGADPRRDRPLQFAGIRTTPELEIVGEPVMFYGKPPLEMPPHPDACLITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ GI E +FA+ + + PGT VGYN++ FDDE TR M +RN PY REW
Sbjct: 62 ITPQQAEREGINEAEFAARVHEQLAAPGTCGVGYNSLRFDDEFTRQMLYRNFYEPYGREW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+N SRWDLI++++ L P GI WP + +G PSFKLEHL+ N L+ ++AHDALSDV
Sbjct: 122 ENGNSRWDLIDLVRMCQALRPEGIVWPTREDGSPSFKLEHLASANQLTQERAHDALSDVH 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
A + LARLIR PRL+++ LR+K+ V + P +++ + + ++++ P
Sbjct: 182 ALIELARLIRVRQPRLWDWYYGLRRKQKVFELLDVVNMTPLVHVSSRYPASRHCLAVIAP 241
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP +I ++L DP +L D ++I D + + E IP+ + N +P
Sbjct: 242 LAAHPSRAGEVIVYDLATDPATWLALDEDEIADRIFTARTDLPEGIERIPLRTVRANHAP 301
Query: 608 IVISNLKVLSSNLMFRYKFDL-NC-AFKNIKCASSILNNTYIWKKIFLDYKINNSDLELN 665
++ L VL + R + DL C A +++ A L +++F ++L
Sbjct: 302 -ALAPLSVLQGVDLDRLQLDLARCQAHRDVLHAVDGLAEKL--RRVFQ----RAAELPPP 354
Query: 666 IDEELY---NNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
D EL F+ D LA +R+ P++L F F + + EL+F YRARN+ ETL
Sbjct: 355 EDPELALYGGGFLPDADKRLLAQVRATPPQELGARAFPFRDPRYPELLFRYRARNWPETL 414
Query: 723 SYKELKRWKKYRISRFYNKKNNLYNINM--FYLEIESLLKKANEHDT-KILNALLMYGK 778
E RW+ +R +R + L + + ++ + L + D +L+ L +G+
Sbjct: 415 DADEHARWEDFRRARL-TRHTPLTGLTLDDYFARLGELRRDPAVQDKLPLLDQLQAWGE 472
>gi|420373186|ref|ZP_14873346.1| exodeoxyribonuclease I [Shigella flexneri 1235-66]
gi|391317517|gb|EIQ74805.1| exodeoxyribonuclease I [Shigella flexneri 1235-66]
Length = 474
Score = 313 bits (801), Expect = 5e-82, Method: Composition-based stats.
Identities = 165/432 (38%), Positives = 245/432 (56%), Gaps = 13/432 (3%)
Query: 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKIT 372
FL++DYETFG + DRP QFAAIRTD N I +P + YCKPA D+LP P A LIT IT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDSDFNIIGDPEVFYCKPADDYLPQPEAVLITGIT 69
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
PQ + G E FA+ I +F P T +GYN + FDDE+TR + +RN +PY W+N
Sbjct: 70 PQEARDKGENEAAFAARIHALFTVPKTCILGYNNVRFDDEVTRNILYRNFYDPYAWSWQN 129
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRAT 492
+ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV AT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTRANGIEHANAHDAMADVYAT 189
Query: 493 LGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPIC 552
+ +A+L+++ PRLF+++ S R K + A I P +P +++ MF + S + P+
Sbjct: 190 IAMAQLVKSRQPRLFDYLYSHRNKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 249
Query: 553 IHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIVI 610
HP N+N +I +L D L D + +R L K ++ +P+ ++H+N+ P V+
Sbjct: 250 WHPDNRNAVIMVDLAGDISPLLELDSDTLRARLYTAKADLGDNAAVPVKLVHINKCP-VL 308
Query: 611 SNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLELNI 666
+ L R + N+K + N + K+ + SD N+
Sbjct: 309 AQANTLRPEDADRLGINRQHCLDNLKV---LRENPQVRDKVVAIFAEAEPFAPSD---NV 362
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL E
Sbjct: 363 DAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDEGE 422
Query: 727 LKRWKKYRISRF 738
+RW +R F
Sbjct: 423 QQRWLDHRRQVF 434
>gi|126443368|ref|YP_001063539.1| DNA polymerase I [Burkholderia pseudomallei 668]
gi|126222859|gb|ABN86364.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 668]
Length = 923
Score = 313 bits (801), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 144/270 (53%), Positives = 196/270 (72%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG + MLR++ K+ A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIVNMLRRMRKDVSAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAKQA +H +
Sbjct: 75 DLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAKQA-EQHGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLV++++ LIN N+ DR ++++FGV PE+IVDY SLIGD DN+
Sbjct: 134 NVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L QY SL+ ++ +A IKGV+G NLR AL++LP +K++T++T C+
Sbjct: 194 PGVEKCGPKTAVKWLMQYGSLDGVVEHAGEIKGVVGDNLRRALDFLPLARKLVTVETGCE 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L ++ S SL + L ++F KY
Sbjct: 254 LAPHVESFDASLATDGEGRDALREIFAKYG 283
>gi|284007268|emb|CBA72582.1| exodeoxyribonuclease I [Arsenophonus nasoniae]
Length = 474
Score = 313 bits (801), Expect = 5e-82, Method: Composition-based stats.
Identities = 173/472 (36%), Positives = 262/472 (55%), Gaps = 14/472 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
S+FL++DYETFG + DRP QFA IRTD N I++P + YC PA D+LP P+A +IT
Sbjct: 7 SSFLFHDYETFGQHPALDRPAQFAGIRTDSNFNIIEDPQIFYCAPADDYLPQPQAVMITG 66
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ+ + +GI E +FA I IF + +GYN I FDDE+TR +F+RN +PY W
Sbjct: 67 ITPQYAIAHGINEAEFAKRIHGIFSIANSCILGYNNIRFDDEVTRHIFYRNFYDPYAYSW 126
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDL++V++A Y L P GI WP + G PSFKLEHL+ VN + H AHDA +DV
Sbjct: 127 QQGNSRWDLLDVLRACYALRPDGINWPSNDEGLPSFKLEHLTVVNGIEHANAHDATADVL 186
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+LI+ P++F++ LR K V I P +++ MF + + SL+ P
Sbjct: 187 ATIEMAKLIKQAQPKMFDYFFRLRNKNEVKQLIDIIAMTPLVHVSGMFGAIRANTSLIAP 246
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R L K+ + IPI +IH+N+ PI
Sbjct: 247 LAWHPENRNAIIACDLAADISPLLTLDSDTLRQRLYTPKDELAGELAIPIKLIHINKCPI 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF-LDYKINNSDLELNID 667
++ L + R DL+ N+ + + ++ + K+ L + ++D
Sbjct: 307 -LAPANTLRTADAQRIALDLDVCQNNL---AILRQHSEVRDKVIRLFTEAQPFPAATDVD 362
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY+ F D +AI+R P+ L ++ F++ ++ +L F YRARN+ TL+ +E
Sbjct: 363 AMLYSGFFGDNDRSTMAIIRQTLPQNLPALDLKFDDPRMRQLFFRYRARNYPATLTEQEQ 422
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI--LNALLMYG 777
W +R R +K I+ + IE L + E+ K L AL+ Y
Sbjct: 423 LAWLHHRRDRLTCEK-----ISQYLQTIEQLFAEHQENKEKCQQLKALVDYA 469
>gi|312884477|ref|ZP_07744181.1| exonuclease I [Vibrio caribbenthicus ATCC BAA-2122]
gi|309367789|gb|EFP95337.1| exonuclease I [Vibrio caribbenthicus ATCC BAA-2122]
Length = 474
Score = 313 bits (801), Expect = 6e-82, Method: Composition-based stats.
Identities = 162/443 (36%), Positives = 254/443 (57%), Gaps = 9/443 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYET+G N DRP QFA +RTD N I P++LYC+P D+LP P A LIT I
Sbjct: 8 TFFFFDYETWGTNPATDRPCQFAGVRTDRDFNIIGEPVVLYCQPPNDYLPSPEAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+ E +F + I + P TIS+GYN+I FDDE+TR+ +RN I+PY W+
Sbjct: 68 TPQKAQAEGLIEPEFIAKIHEQLATPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++A + L P GI WP + G PSFKLEHLS N + H+ AHDA++DV A
Sbjct: 128 NGNSRWDLLDVMRACHALRPEGINWPQNDEGFPSFKLEHLSVANGIEHENAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+ I P+LF + L +R K+ + I P +++ M + Y S + P+
Sbjct: 188 TIEMAKKISVAQPKLFQYFLDMRHKRKLNDLIDIVNMTPLMHVSGMLGKECQYTSWIVPV 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE---DIPISMIHLNRSPI 608
HP N+N +I +L DP + ++ + L K++ + PI ++HLN+SPI
Sbjct: 248 AWHPTNQNAVICIDLARDPSAIFDLNAQQLHERLYTKRSELNDKEVSAPIKLVHLNKSPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++ R D +N+ + + N+ I +K+ Y I ++D
Sbjct: 308 -LAPAKTLTAEDAQRIGIDREACLENL---AMLRNHPEIREKLIGVYSIEREFKKSSDVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY+ F + D + I+R P+ LS ++ F+++++ +L+F YRARNF TLS E
Sbjct: 364 AMLYDGFFNPADKTAMKIIRETDPECLSTLDISFDDERISKLLFRYRARNFPWTLSEPEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINM 750
++W + ++ ++ Y +N+
Sbjct: 424 QKWANH-CREYFEQRIEDYMLNL 445
>gi|283785833|ref|YP_003365698.1| exodeoxyribonuclease I [Citrobacter rodentium ICC168]
gi|282949287|emb|CBG88898.1| exodeoxyribonuclease I [Citrobacter rodentium ICC168]
Length = 474
Score = 313 bits (801), Expect = 6e-82, Method: Composition-based stats.
Identities = 165/433 (38%), Positives = 249/433 (57%), Gaps = 13/433 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAA+RTD N + P + YCKPA D+LP P A L+T I
Sbjct: 9 TFLFHDYETFGTHPALDRPAQFAALRTDGDFNVVGEPEVFYCKPADDYLPQPGAVLVTGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G E FA+ I +F P T VGYN + FDDE+TR + +RN +PY W+
Sbjct: 69 TPQEAREKGENEAAFAARIHALFTVPKTCIVGYNNVRFDDEVTRNILYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L+++ PRLF+++ + R K + A I P +P +++ MF + S + P+
Sbjct: 189 TIAMAQLVKSRQPRLFDYLYTHRNKDKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R+ L K ++ IP+ ++H+N+ P V
Sbjct: 249 AWHPENRNAVIMVDLAGDISSLLELDSDTLRERLYTAKADLGDNAAIPLKLVHINKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYK-INNSDLELN 665
++ L R + N+K + +N + K IF + + SD N
Sbjct: 308 LAQANTLRPEDADRLGINRQHCLDNLKV---LRDNPQVRDKAVAIFAEAEPFIPSD---N 361
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL
Sbjct: 362 VDTQLYNGFFSDADRAAMKIVLETEPQNLPALDITFVDKRIEKLLFNYRARNFPGTLDEA 421
Query: 726 ELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 EQQRWLEHRRQVF 434
>gi|283832563|ref|ZP_06352304.1| exodeoxyribonuclease I [Citrobacter youngae ATCC 29220]
gi|291072232|gb|EFE10341.1| exodeoxyribonuclease I [Citrobacter youngae ATCC 29220]
Length = 474
Score = 313 bits (801), Expect = 6e-82, Method: Composition-based stats.
Identities = 175/477 (36%), Positives = 260/477 (54%), Gaps = 26/477 (5%)
Query: 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKIT 372
FL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT IT
Sbjct: 10 FLFHDYETFGTHPALDRPAQFAAIRTDNDFNIIGEPEVFYCKPADDYLPQPEAVLITGIT 69
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
PQ G E FA+ I +F P T +GYN + FDDE+TR + +RN +PY W+N
Sbjct: 70 PQEAREKGENEAAFAARIHALFTVPKTCILGYNNVRFDDEVTRNILYRNFYDPYAWSWQN 129
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRAT 492
+ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV AT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHANAHDAMADVYAT 189
Query: 493 LGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPIC 552
+ +A+L+++ PRLF+++ S R K + A I P +P +++ MF + S + P+
Sbjct: 190 IAMAQLVKSRQPRLFDYLYSHRNKHKLAALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 249
Query: 553 IHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIVI 610
HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P V+
Sbjct: 250 WHPENRNAVIMVDLAGDISPLLELDSDALRERLYTAKADLGDNPAVPVKLVHINKCP-VL 308
Query: 611 SNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYK-INNSDLELNI 666
+ L R + N+ + N + K IF D + SD N+
Sbjct: 309 AQANTLRPEDADRLGINRQHCLDNLNL---LRENPQVRDKVVAIFADAEPFAPSD---NV 362
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL E
Sbjct: 363 DTQLYNGFFSDADRAAMKIVLETEPRNLPALDISFVDKRIEKLLFNYRARNFPGTLDEAE 422
Query: 727 LKRWKKYRISRF-----YNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGK 778
+RW +R F N N L ++ Y + N+ +L +L Y +
Sbjct: 423 QQRWLDHRRQVFTPEFLQNYANELQTLSQQYAD--------NKEKLMLLKSLWQYAQ 471
>gi|91223947|ref|ZP_01259211.1| exodeoxyribonuclease I [Vibrio alginolyticus 12G01]
gi|91191439|gb|EAS77704.1| exodeoxyribonuclease I [Vibrio alginolyticus 12G01]
Length = 473
Score = 313 bits (801), Expect = 6e-82, Method: Composition-based stats.
Identities = 164/471 (34%), Positives = 266/471 (56%), Gaps = 20/471 (4%)
Query: 306 LHNGNS-TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPR 364
+H N TF ++DYET+G N +DRP QFA RTD N I P+++YC+P D+LP P
Sbjct: 1 MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGARTDENFNIIGEPLVMYCQPPADYLPSPE 60
Query: 365 ACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLIN 424
A LIT ITPQ + G+ E +F + I +P T S+GYN+I FDDE+TR+ +RN I+
Sbjct: 61 AALITGITPQKTVQEGLSEPEFIAKIHAELARPNTTSLGYNSIRFDDEVTRYTCYRNFID 120
Query: 425 PYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHD 484
PY W+N SRWDL++V++A + L P G+ WP +G SFKLEHLS N + H AHD
Sbjct: 121 PYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFTSFKLEHLSVANGIEHSNAHD 180
Query: 485 ALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSY 544
A++DV AT+ +A+ ++ P+LF++ S+R+K+ + + P +++ M + Y
Sbjct: 181 AMADVVATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQY 240
Query: 545 ISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIH 602
S + P+ HP N N +IT +L DP+ L ++ + L K+ E +P+ ++H
Sbjct: 241 TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVH 300
Query: 603 LNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF----LDYKIN 658
LN+ PI ++ K L++ D N+ + + + I +K+ ++ K +
Sbjct: 301 LNKCPI-LAPAKTLTAENAESIGIDRQQCLANL---ALLRQHPEIREKLISLFSVERKFD 356
Query: 659 NSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNF 718
SD ++D +LY+ F S D + I+R P L+ ++ F++K+++ L+F YRARNF
Sbjct: 357 KSD---DVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARNF 413
Query: 719 IETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI 769
TL +E +RW + F ++ I + L +E+L+ + + KI
Sbjct: 414 PGTLDEQEQRRWALHCREVFESQ------IEEYMLNLENLVHEHESDEKKI 458
>gi|333893502|ref|YP_004467377.1| exodeoxyribonuclease I [Alteromonas sp. SN2]
gi|332993520|gb|AEF03575.1| exodeoxyribonuclease I [Alteromonas sp. SN2]
Length = 477
Score = 312 bits (800), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 179/478 (37%), Positives = 265/478 (55%), Gaps = 18/478 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+FLWYD+ETFG + ++D P QFAAIRTD+ N I PI + A D+LP P ACL+T I
Sbjct: 5 SFLWYDFETFGTSGQKDLPCQFAAIRTDLDFNIIGKPINIMSAIANDYLPHPEACLVTGI 64
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L +G E FA I + P T S+G+N+I FDDE+ RF+F+RN +PY REW+
Sbjct: 65 TPQQTLRDGSNEADFAKRIYQEMSTPNTCSLGFNSIRFDDEVARFLFYRNFYDPYSREWR 124
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD+I++ +A Y L P GI WP + +G PSFKLEHL+ N++SH+ AHDALSDV A
Sbjct: 125 NGNSRWDIIDLARACYALRPDGINWPTREDGTPSFKLEHLTKENDISHENAHDALSDVHA 184
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+LI+ PRLF + SLR K V + +I+ + + + PI
Sbjct: 185 TIALAKLIKEKQPRLFEYAYSLRSKHNVANQFDLTKPSVLLHISAKLPASQGCCTWIMPI 244
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDIN---KIRDYLCFKKNSFKEDI--PISMIHLNRS 606
HP N N +I + L P LLND K + Y ++ S + + +IH+NRS
Sbjct: 245 AKHPTNSNAIIAVD-LSKPIDSLLNDSPEEIKAKLYARYEPGSDANSLRPGLKLIHINRS 303
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNI 666
P V + K ++ + R D + +N + + + K+ Y+ + D E +I
Sbjct: 304 PFVTT-AKAMTEDNAHRLGLDRDTCLENYRI---LAQERDLGMKLSNVYENDTDDKEQDI 359
Query: 667 DEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
D LY+ F+S +D + + SP++L + ++ L L+F YRARNF TL+Y
Sbjct: 360 DHALYSGGFLSTEDRHWCDKVLASSPEQLGALAEETQHVGLRALLFRYRARNFPSTLTYD 419
Query: 726 ELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEH-----DTKILNALLMYGK 778
E +W+++R +R + ++ Y+ +L + A+EH IL AL Y +
Sbjct: 420 ETLKWQRHRQARLTDPTSSASITLEHYM--STLERLAHEHVDNPEKQAILRALFQYAE 475
>gi|440287041|ref|YP_007339806.1| exonuclease I [Enterobacteriaceae bacterium strain FGI 57]
gi|440046563|gb|AGB77621.1| exonuclease I [Enterobacteriaceae bacterium strain FGI 57]
Length = 474
Score = 312 bits (800), Expect = 8e-82, Method: Composition-based stats.
Identities = 169/469 (36%), Positives = 254/469 (54%), Gaps = 10/469 (2%)
Query: 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKIT 372
FL++DYETFG + DRP QFAAIRTD N + P + YCKPA D+LP P A LIT IT
Sbjct: 10 FLFHDYETFGTSPSLDRPAQFAAIRTDNDFNIVGEPEVFYCKPADDYLPQPEAVLITGIT 69
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
PQ G E FA I +F P T VGYN + FDDE+TR +F+RN +PY W+N
Sbjct: 70 PQEARAKGDNEAAFARRIHDLFTVPNTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQN 129
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRAT 492
+ SRWDL++V++A Y L P GI WP +G PSF+LEHL+ N + H AHDA++DV AT
Sbjct: 130 HNSRWDLLDVMRACYALRPEGINWPENEDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 189
Query: 493 LGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPIC 552
+ +A+L++ P+LF+++ + R K+ + I P +P +++ MF + S + P+
Sbjct: 190 IAMAKLVKTQQPKLFDYLYAYRSKQKLTTLIDVPQMKPLVHVSGMFGAWRGNTSWIAPLA 249
Query: 553 IHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIVI 610
HP N+N +I +L D L D + +R+ L K + +P+ ++HLN+ P V+
Sbjct: 250 WHPDNRNAVIMVDLAGDISSLLDLDADTLRERLYTPKAELGDTSPVPVKLVHLNKCP-VL 308
Query: 611 SNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL-ELNIDEE 669
+ L R + N+K + N + +K+ + + N+D +
Sbjct: 309 AVANTLRPEDAERLGINRQHCLDNLKV---LRENPQVREKVVAIFAEAEPFVPSPNVDAQ 365
Query: 670 LYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKR 729
LYN F S D + I+ P+ L ++ F + ++E+L+F YRARNF +L +E R
Sbjct: 366 LYNGFFSDADRAAMKIVLETEPRNLPALDLTFADARIEKLLFNYRARNFPGSLDEQEQMR 425
Query: 730 WKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGK 778
W ++R F + Y M LE + N +L AL Y +
Sbjct: 426 WLEHRRDVFTPEFLQAY---MQQLEALYAQYEGNSEKLALLKALYQYAQ 471
>gi|397686000|ref|YP_006523319.1| exonuclease I [Pseudomonas stutzeri DSM 10701]
gi|395807556|gb|AFN76961.1| exonuclease I [Pseudomonas stutzeri DSM 10701]
Length = 477
Score = 312 bits (800), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 166/494 (33%), Positives = 270/494 (54%), Gaps = 27/494 (5%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
S+ WYD+ET G++ R DRP Q A IRT+ L I P+ +YC+ + D LP P ACL+T
Sbjct: 2 TSSIFWYDFETTGISPRCDRPLQVAGIRTNEALEEIGEPLNVYCRLSDDILPHPAACLVT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITP+ + G+ E +F ++ + PGT GYNT+ FDDE+TR+ +RN +PY RE
Sbjct: 62 GITPETLASKGLCEAEFVHLLHQQLSLPGTCGAGYNTLRFDDEVTRYSLYRNFHDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDLI++++ Y L P G+ WP + +G+ + KLE LS N L H +AHDALSDV
Sbjct: 122 WQGGNSRWDLIDLVRTAYALRPEGLVWP-EEDGRVTLKLERLSVANGLEHLQAHDALSDV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RAT+GLARLIR PRL+ ++ LR+K+ VL ++ + +P +I+ FS+ Y+S++
Sbjct: 181 RATIGLARLIRERQPRLYRYLYELRRKQAVLDQVQ--LLKPMVHISGRFSAARHYLSVVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDIPIS--MIHLNRSP 607
P+ HP N+N LI +L + +R+ L +++ + +P+ ++H+NR P
Sbjct: 239 PLAWHPRNRNALIVCDLQAECSPLWEESAETLRERLYTRRDELEGQLPVPLKLVHINRCP 298
Query: 608 IVISNLKVLSSNLMFRYKFDLN-CAFKNIKCASSILNNTYIWKKIFLDYKINN--SDLEL 664
V++ + VL + + R DL+ C + A + + +W D + LE
Sbjct: 299 -VLAPMNVLRAADIARLGLDLDSCETR----ARRLRDCQDVWNAKLGDIYAEEPFAGLE- 352
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
+ +++LY+ F+ ++D +R+ + F++ +L EL+F YRARNF ++LS
Sbjct: 353 DPEQQLYDGFLGERDRRLCEQVRNHPAPDSTLRTLPFDDPRLPELLFRYRARNFPQSLSE 412
Query: 725 KELKRWKKYRISRF----YNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGKID 780
E ++W + R + N L E+++ +A+ +L +
Sbjct: 413 TEQQQWHLFCQKRLTLPEWGAPNTLAQFEQAMREVQA---QASPEQVGLLQ------QWS 463
Query: 781 GSSCIYRAFYALPD 794
+C R Y L D
Sbjct: 464 THACQLRERYGLKD 477
>gi|385206452|ref|ZP_10033322.1| DNA polymerase I [Burkholderia sp. Ch1-1]
gi|385186343|gb|EIF35617.1| DNA polymerase I [Burkholderia sp. Ch1-1]
Length = 913
Score = 312 bits (800), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 151/297 (50%), Positives = 208/297 (70%), Gaps = 5/297 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R D P GALYG I MLR++ K A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPDGGPTGALYGMINMLRRMRKEVTAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
Y YKA R MP +L QI IH V+A+GWP+L+I+GVEADDVIGTL+ +A K +
Sbjct: 75 DWYADYKANRPSMPDDLSRQIEPIHVAVRALGWPLLMIEGVEADDVIGTLSTEA-EKRGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLVS+ + LIN N+ DR ++++FGV PE+I+DY SL+GD DN+
Sbjct: 134 NVIVSTGDKDLAQLVSDHVTLINTMTNEKLDRAGVLAKFGVPPERIIDYLSLVGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L Q++SL+ I+ +A+ IKG +G NLR AL++LP KK++T++ +CD
Sbjct: 194 PGVEKCGPKTAVKWLTQFDSLDGIVAHADEIKGAVGDNLRRALDFLPMAKKLVTVERNCD 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYNIPLKNHDDNISD--ENYDIDCSDAKSL 1071
LT +IVSI ESL QP+ L ++F ++ + I+D E + D A S+
Sbjct: 254 LTDHIVSIEESLQSQPESRAELREVFTRHGFKTWLREVEIADAVEGPETDVPPALSV 310
>gi|423115140|ref|ZP_17102831.1| exodeoxyribonuclease I [Klebsiella oxytoca 10-5245]
gi|376382825|gb|EHS95556.1| exodeoxyribonuclease I [Klebsiella oxytoca 10-5245]
Length = 474
Score = 312 bits (800), Expect = 9e-82, Method: Composition-based stats.
Identities = 161/433 (37%), Positives = 246/433 (56%), Gaps = 13/433 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+FL++DYETFG + DRP QFAAIRTD LN + P + YC+ A D+LP P+A ++T I
Sbjct: 9 SFLFHDYETFGTSPSLDRPSQFAAIRTDEDLNIVGEPEVFYCRLADDYLPQPQAVMVTGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G E FA + +F P T VGYN + FDDE+TR +F+RN +PY W+
Sbjct: 69 TPQEANAKGDNEAAFARRVHDLFTVPKTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
++ SRWDL++V++ Y L P GI WP + G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 HDNSRWDLLDVMRTCYALRPEGINWPENDEGLPSFRLEHLTVANGIEHSNAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF+++ + R K+ + I P +P +++ MF + SL+ P+
Sbjct: 189 TIAMAKLVKTQQPRLFDYLYAHRNKRKLATLIDVPQIKPLVHVSGMFGAARGNTSLVAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIV 609
HP N+N +I +L D L D + +R+ L K+ + +PI ++HLN+ P V
Sbjct: 249 AWHPDNRNAVIMVDLAGDIAPLLDLDADVLRERLYTPKSELGDLAAVPIKLVHLNKCP-V 307
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINN----SDLELN 665
++ L R ++ +N A + N + +K+ Y SD N
Sbjct: 308 LAQQNTLRPQDADRLGINIQRCLEN---AQRLRANPQVREKVVAIYAEAEPFVPSD---N 361
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LYN F S D + I+ P+ L ++ F +K++E L+F YRARN+ TL
Sbjct: 362 VDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFADKRIERLLFNYRARNYPGTLDEA 421
Query: 726 ELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 EQQRWLEHRRQVF 434
>gi|91777303|ref|YP_552511.1| DNA polymerase I [Burkholderia xenovorans LB400]
gi|91689963|gb|ABE33161.1| DNA polymerase A [Burkholderia xenovorans LB400]
Length = 913
Score = 312 bits (799), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 151/297 (50%), Positives = 208/297 (70%), Gaps = 5/297 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R D P GALYG I MLR++ K A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPDGGPTGALYGMINMLRRMRKEVTAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
Y YKA R MP +L QI IH V+A+GWP+L+I+GVEADDVIGTL+ +A K +
Sbjct: 75 DWYADYKANRPSMPDDLSRQIEPIHVAVRALGWPLLMIEGVEADDVIGTLSTEA-EKRGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLVS+ + LIN N+ DR ++++FGV PE+I+DY SL+GD DN+
Sbjct: 134 NVIVSTGDKDLAQLVSDHVTLINTMTNEKLDRAGVLAKFGVPPERIIDYLSLVGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L Q++SL+ I+ +A+ IKG +G NLR AL++LP KK++T++ +CD
Sbjct: 194 PGVEKCGPKTAVKWLTQFDSLDGIVAHADEIKGAVGDNLRRALDFLPMAKKLVTVERNCD 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYNIPLKNHDDNISD--ENYDIDCSDAKSL 1071
LT +IVSI ESL QP+ L ++F ++ + I+D E + D A S+
Sbjct: 254 LTDHIVSIGESLQSQPESRAELREVFTRHGFKTWLREVEIADAVEGPETDVPPALSV 310
>gi|421728866|ref|ZP_16168017.1| exonuclease I [Klebsiella oxytoca M5al]
gi|410370459|gb|EKP25189.1| exonuclease I [Klebsiella oxytoca M5al]
Length = 474
Score = 312 bits (799), Expect = 9e-82, Method: Composition-based stats.
Identities = 161/432 (37%), Positives = 244/432 (56%), Gaps = 13/432 (3%)
Query: 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKIT 372
FL++DYETFG + DRP QFAAIRTD LN + P + YC+ A D+LP P+A ++T IT
Sbjct: 10 FLFHDYETFGTSPSLDRPSQFAAIRTDEDLNIVGEPEVFYCRIADDYLPQPQAVMVTGIT 69
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
PQ G E FA + +F P T VGYN + FDDE+TR +F+RN +PY W++
Sbjct: 70 PQEANAKGDSEAAFARRVHDLFTVPKTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRAT 492
+ SRWDL++V++A Y L P GI WP G PSF+LEHL+ N + H AHDA++DV AT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENEEGLPSFRLEHLTVANGIEHSNAHDAMADVYAT 189
Query: 493 LGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPIC 552
+ +A+L++ PRLF+++ + R K+ + I P +P +++ MF + SL+ P+
Sbjct: 190 IAMAKLVKTQQPRLFDYLYAHRNKRKLATLIDVPQIKPLVHVSGMFGAARGNTSLVAPLA 249
Query: 553 IHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIVI 610
HP N+N +I +L D L D + +R+ L K+ + +PI ++HLN+ P V+
Sbjct: 250 WHPDNRNAVIMVDLAGDIAPLLELDADTLRERLYTPKSELGDLPAVPIKLVHLNKCP-VL 308
Query: 611 SNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINN----SDLELNI 666
+ L R ++ N A + N + +K+ + SD N+
Sbjct: 309 AQQNTLRPQDADRLGINIQRCLDN---AQLLRANPQVREKVVAIFAEAEPFVPSD---NV 362
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
D +LYN F S D + I+ P+ L ++ F +K++E L+F YRARN+ TL E
Sbjct: 363 DAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFADKRIERLLFNYRARNYPGTLDEAE 422
Query: 727 LKRWKKYRISRF 738
+RW ++R F
Sbjct: 423 QQRWLEHRRQVF 434
>gi|94311560|ref|YP_584770.1| DNA polymerase I [Cupriavidus metallidurans CH34]
gi|93355412|gb|ABF09501.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ;
3'->5' exonuclease [Cupriavidus metallidurans CH34]
Length = 934
Score = 312 bits (799), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 139/270 (51%), Positives = 201/270 (74%), Gaps = 4/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++ALPD+RN + P GA+YG I MLRKL +Y A YIAC+FDAKGK FR+
Sbjct: 11 VDGSSYLYRAYHALPDLRNGEGLPTGAIYGMINMLRKLRNDYPAQYIACVFDAKGKTFRD 70
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
+YP+YK R MP +L QI IH+ V+A+GWPI++++GVEADDVIGTLA QA ++ +
Sbjct: 71 DMYPAYKEHRPSMPEDLAKQIEPIHEAVRALGWPIVVVEGVEADDVIGTLALQA-SQQGV 129
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
++ST DKD+AQLV++ + L+N + ++ D ++++FGV PE+IVDY SLIGD DN+
Sbjct: 130 NTVVSTGDKDLAQLVNDTVTLVNTMSGEVLDPPGVVAKFGVPPERIVDYLSLIGDAVDNV 189
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV K+GPKTAVK L +Y +L++I+ NA IKGV+G+NLR L WLP+ ++++T+KTDCD
Sbjct: 190 PGVPKVGPKTAVKWLTEYGTLDDIMGNAEKIKGVVGENLRNTLEWLPRARELVTVKTDCD 249
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L+ + ++L +D++ L+ F +Y
Sbjct: 250 LSGAVADF-QALHDLGEDKEKLIAFFQRYG 278
>gi|156974404|ref|YP_001445311.1| exonuclease I [Vibrio harveyi ATCC BAA-1116]
gi|388601182|ref|ZP_10159578.1| exonuclease I [Vibrio campbellii DS40M4]
gi|444424291|ref|ZP_21219749.1| exonuclease I [Vibrio campbellii CAIM 519 = NBRC 15631]
gi|156525998|gb|ABU71084.1| hypothetical protein VIBHAR_02119 [Vibrio harveyi ATCC BAA-1116]
gi|444242286|gb|ELU53800.1| exonuclease I [Vibrio campbellii CAIM 519 = NBRC 15631]
Length = 473
Score = 312 bits (799), Expect = 1e-81, Method: Composition-based stats.
Identities = 161/471 (34%), Positives = 269/471 (57%), Gaps = 20/471 (4%)
Query: 306 LHNGNS-TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPR 364
+H N TF ++DYET+G + +DRP QFA +RTD N I P+++YC+P D+LP P
Sbjct: 1 MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPD 60
Query: 365 ACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLIN 424
A LIT ITPQ + G+PE +F + I KP T S+GYN+I FDDE+TR+ +RN I+
Sbjct: 61 AALITGITPQKAMQEGLPEPEFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFID 120
Query: 425 PYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHD 484
PY W+N SRWDL++V++A + L P G+ WP + G SFKLEHLS N + H AHD
Sbjct: 121 PYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFTSFKLEHLSVANGIEHSNAHD 180
Query: 485 ALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSY 544
A++DV AT+ +A+ ++ P+LF++ S+R K+ + + P +++ M + Y
Sbjct: 181 AMADVVATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY 240
Query: 545 ISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIH 602
S + P+ HP N N +IT +L DP+ L ++++ L K++ + +P+ ++H
Sbjct: 241 TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVH 300
Query: 603 LNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF----LDYKIN 658
LN+ PI ++ K L++ D N+ + + + I +K+ ++ +
Sbjct: 301 LNKCPI-LAPAKTLTAENAEVIGIDRQKCLSNL---ALLRQHPEIREKLISLFSIEREFE 356
Query: 659 NSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNF 718
SD ++D +LY+ F S D + I+R P L+ ++ F++K+++ L+F YRAR++
Sbjct: 357 KSD---DVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARHY 413
Query: 719 IETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI 769
TL +E +RW ++ F ++ I + L +E+L+ + + KI
Sbjct: 414 AGTLDEQEQRRWAQHCREVFESQ------IEEYMLNLENLVHEHESDEKKI 458
>gi|425063299|ref|ZP_18466424.1| Exodeoxyribonuclease I [Pasteurella multocida subsp. gallicida X73]
gi|404382862|gb|EJZ79319.1| Exodeoxyribonuclease I [Pasteurella multocida subsp. gallicida X73]
Length = 481
Score = 312 bits (799), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 163/430 (37%), Positives = 245/430 (56%), Gaps = 13/430 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YDYE+FG++ DRP QFA IRTDI N I +P+M YCK D+LP P A L+T I
Sbjct: 14 SFFIYDYESFGVDPASDRPAQFAGIRTDINFNIISDPVMFYCKQTNDYLPAPEAVLVTGI 73
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C GIPE +FA I + F +P T +G+N I +DDE+TR+ F+RN I+PYE WK
Sbjct: 74 TPQECNEKGIPEPEFAERILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWK 133
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI W Y G PSF+LE L+ N + H AHDA++DV A
Sbjct: 134 NGNSRWDLLDLVRACYALRPEGINWAYDEEGMPSFRLEKLTKANGIEHSNAHDAMADVYA 193
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF + R KK V I P +++ M + + + P+
Sbjct: 194 TIAMAKLIKEKQPKLFQYFFENRGKKEVEKLIDTANLTPLVHVSGMLGNHRGNTTWIVPL 253
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLNRSP 607
HP N+N +I +L + L D N++R L K E +P+ ++H+N+ P
Sbjct: 254 AWHPTNQNAVICCDLAANITDLLNKDANELRQNLYTPKAELIEKGILPVPLKLVHINKCP 313
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKN---IKCASSILNNTYIWKKIFLDYKINNSDLEL 664
I+ +L N R D +N +K + SI + +IF + + + +
Sbjct: 314 ILAPAKTLLPENAA-RLGIDRTFCLENLQRLKLSPSIRDKV---TEIFNEER--HFAPSI 367
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N++ ELYN F D +AILR + +KL+ F++ ++ +L+F YRAR++ +L+
Sbjct: 368 NVETELYNGFFDYNDKNNMAILRHLPEEKLAEHGLAFKDARIPKLLFHYRARHYFNSLTR 427
Query: 725 KELKRWKKYR 734
E +W+KYR
Sbjct: 428 AEQIQWQKYR 437
>gi|167842181|ref|ZP_02468865.1| DNA polymerase I [Burkholderia thailandensis MSMB43]
gi|424905512|ref|ZP_18329015.1| DNA polymerase I [Burkholderia thailandensis MSMB43]
gi|390928405|gb|EIP85809.1| DNA polymerase I [Burkholderia thailandensis MSMB43]
Length = 926
Score = 312 bits (799), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 144/270 (53%), Positives = 195/270 (72%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG I MLR++ K+ A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKDVSAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAKQA +H +
Sbjct: 75 DLYADYKAHRPPMPPDLALQIEPIHAAVRALGWPLLMIEGVEADDVIGTLAKQA-EQHGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLV++++ LIN N+ DR ++++FGV PE+IVDY SLIGD DN+
Sbjct: 134 NVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L QY SL+ ++ +A IKGV+G NLR AL++LP ++++T++T C+
Sbjct: 194 PGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVVGDNLRRALDFLPLARQLVTVETACE 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L ++ S SL + L +F KY
Sbjct: 254 LAPHVESFDASLATDGEGRDALRDIFAKYG 283
>gi|417853230|ref|ZP_12498645.1| exonuclease I [Pasteurella multocida subsp. gallicida str.
Anand1_poultry]
gi|338215327|gb|EGP01619.1| exonuclease I [Pasteurella multocida subsp. gallicida str.
Anand1_poultry]
Length = 475
Score = 311 bits (798), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 163/430 (37%), Positives = 246/430 (57%), Gaps = 13/430 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YDYE+FG++ DRP QFA IRTDI N I +P+M YCK D+LP P A L+T I
Sbjct: 8 SFFIYDYESFGVDPASDRPAQFAGIRTDINFNIISDPVMFYCKQTNDYLPAPEAVLVTGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C GIPE +FA I + F +P T +G+N I +DDE+TR+ F+RN I+PYE WK
Sbjct: 68 TPQECNEKGIPEPEFAERILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWK 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI W Y G PSF+LE L+ N++ H AHDA++DV A
Sbjct: 128 NGNSRWDLLDLVRACYALRPEGINWAYDEEGMPSFRLEKLTKANDIEHSNAHDAMADVYA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF + R KK V I P +++ M + + + P+
Sbjct: 188 TIAMAKLIKEKQPKLFQYFFENRGKKEVEKLIDTANLTPLVHVSGMLGNHRGNTTWIVPL 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLNRSP 607
HP N+N +I +L + L D N++R +L K E +P+ ++H+N+ P
Sbjct: 248 AWHPTNQNAVICCDLAANITDLLNKDANELRQHLYTPKAELIEKGILPVPLKLVHINKCP 307
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKN---IKCASSILNNTYIWKKIFLDYKINNSDLEL 664
I+ +L N R D +N +K + SI + +IF + + + +
Sbjct: 308 ILAPAKTLLPENAA-RLGIDRTFCLENLQRLKLSPSIRDKV---TEIFNEER--HFAPSI 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N++ ELYN F D +AILR + +KL+ F++ ++ +L+F YRAR+ +L+
Sbjct: 362 NVETELYNGFFDYNDKNNMAILRHLPEEKLAEHGLAFKDARIPKLLFHYRARHCFNSLTR 421
Query: 725 KELKRWKKYR 734
E +W+KYR
Sbjct: 422 AEQIQWQKYR 431
>gi|343506929|ref|ZP_08744386.1| exonuclease I [Vibrio ichthyoenteri ATCC 700023]
gi|342800965|gb|EGU36458.1| exonuclease I [Vibrio ichthyoenteri ATCC 700023]
Length = 474
Score = 311 bits (798), Expect = 1e-81, Method: Composition-based stats.
Identities = 163/466 (34%), Positives = 266/466 (57%), Gaps = 15/466 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYET+G + +DRP QFA +RTD+ N I P+++YC+P D+LP A LIT I
Sbjct: 8 TFFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPSDYLPGVEAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
+PQ + G+ E +F I + P TIS+GYN+I FDDE+TR+ +RN +PY W+
Sbjct: 68 SPQLAASKGLIEPEFIRQIHEQLATPNTISLGYNSIRFDDEVTRYTCYRNFFDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++A + L P GI WP + G SFKLEHLS N + H AHDA++DV A
Sbjct: 128 NGNSRWDLLDVMRACHALRPEGIEWPENDEGYISFKLEHLSVANGIEHANAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+ I+ P+LF++ L++R K+ + + P +++ M + +Y S + P+
Sbjct: 188 TIELAKKIKAAQPKLFDYFLTMRHKRKLNELVDIVNMTPLMHVSGMLGRECNYTSWIVPV 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N I +L DP+ L D ++ L K + D +P+ ++HLN+ PI
Sbjct: 248 AWHPTNQNAAIVVDLAKDPQVLLDLDAEALKQRLYTKHSDLAPDELPVPVKLVHLNKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++ + D +N++ I + I +K+ + + + ++D
Sbjct: 308 -LAPAKTLTAENADKIGIDREQCLQNLQV---IRQHPEIREKLIGLFTTDREYEKSTDVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LY+ F S D + I+R P+ L+ ++ F + ++E L+F YRARNF TL+ +E
Sbjct: 364 TQLYDGFFSPADRAAMDIIRQTEPEHLAALDITFSDARIEPLLFRYRARNFPWTLTEQEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNAL 773
+RW + F ++ I+ + L E+L+ + +E DTK + L
Sbjct: 424 QRWSNHCQDYFQSR------IDEYMLNFENLVHE-HESDTKKITLL 462
>gi|430809178|ref|ZP_19436293.1| DNA polymerase I [Cupriavidus sp. HMR-1]
gi|429498322|gb|EKZ96832.1| DNA polymerase I [Cupriavidus sp. HMR-1]
Length = 934
Score = 311 bits (798), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 139/270 (51%), Positives = 200/270 (74%), Gaps = 4/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++ALPD+RN + P GA+YG I MLRKL +Y A YIAC+FDAKGK FR+
Sbjct: 11 VDGSSYLYRAYHALPDLRNGEGLPTGAIYGMINMLRKLRNDYPAQYIACVFDAKGKTFRD 70
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
+YP+YK R MP +L QI IH+ V+A+GWPI++++GVEADDVIGTLA QA ++ +
Sbjct: 71 DMYPAYKEHRPSMPEDLAKQIEPIHEAVRALGWPIVVVEGVEADDVIGTLALQA-SQQGV 129
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
++ST DKD+AQLV++ + L+N + ++ D ++++FGV PE+IVDY SLIGD DN+
Sbjct: 130 NTVVSTGDKDLAQLVNDTVTLVNTMSGEVLDPPGVVAKFGVPPERIVDYLSLIGDAVDNV 189
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV K+GPKTAVK L +Y +L+ I+ NA IKGV+G+NLR L WLP+ ++++T+KTDCD
Sbjct: 190 PGVPKVGPKTAVKWLTEYGTLDEIMGNAEKIKGVVGENLRNTLEWLPRARELVTVKTDCD 249
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L+ + ++L +D++ L+ F +Y
Sbjct: 250 LSGAVADF-QALHDLGEDKEKLIAFFQRYG 278
>gi|53716619|ref|YP_105127.1| DNA polymerase I [Burkholderia mallei ATCC 23344]
gi|121597404|ref|YP_991095.1| DNA polymerase I [Burkholderia mallei SAVP1]
gi|124381759|ref|YP_001025495.1| DNA polymerase I [Burkholderia mallei NCTC 10229]
gi|126446346|ref|YP_001077557.1| DNA polymerase I [Burkholderia mallei NCTC 10247]
gi|167000295|ref|ZP_02266114.1| DNA polymerase I [Burkholderia mallei PRL-20]
gi|238561508|ref|ZP_00441953.2| DNA polymerase I [Burkholderia mallei GB8 horse 4]
gi|254177233|ref|ZP_04883889.1| DNA polymerase I [Burkholderia mallei ATCC 10399]
gi|254203066|ref|ZP_04909428.1| DNA polymerase I [Burkholderia mallei FMH]
gi|254208399|ref|ZP_04914748.1| DNA polymerase I [Burkholderia mallei JHU]
gi|254359414|ref|ZP_04975686.1| DNA polymerase I [Burkholderia mallei 2002721280]
gi|52422589|gb|AAU46159.1| DNA polymerase I [Burkholderia mallei ATCC 23344]
gi|121225202|gb|ABM48733.1| DNA polymerase I [Burkholderia mallei SAVP1]
gi|126239200|gb|ABO02312.1| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10247]
gi|147746111|gb|EDK53189.1| DNA polymerase I [Burkholderia mallei FMH]
gi|147751086|gb|EDK58154.1| DNA polymerase I [Burkholderia mallei JHU]
gi|148028601|gb|EDK86561.1| DNA polymerase I [Burkholderia mallei 2002721280]
gi|160698273|gb|EDP88243.1| DNA polymerase I [Burkholderia mallei ATCC 10399]
gi|238524488|gb|EEP87921.1| DNA polymerase I [Burkholderia mallei GB8 horse 4]
gi|243063777|gb|EES45963.1| DNA polymerase I [Burkholderia mallei PRL-20]
gi|261826488|gb|ABN00542.2| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10229]
Length = 926
Score = 311 bits (798), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 143/270 (52%), Positives = 195/270 (72%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG + MLR++ K+ A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIVNMLRRMRKDVSAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAKQA +H +
Sbjct: 75 DLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAKQA-EQHGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLV++++ LIN N+ DR ++++FGV PE+IVDY SLIGD DN+
Sbjct: 134 NVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L QY SL+ ++ +A IKG +G NLR AL++LP +K++T++T C+
Sbjct: 194 PGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGGVGDNLRRALDFLPLARKLVTVETGCE 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L ++ S SL + L ++F KY
Sbjct: 254 LAPHVESFDASLATDGEGRDALREIFAKYG 283
>gi|188533503|ref|YP_001907300.1| exonuclease I [Erwinia tasmaniensis Et1/99]
gi|188028545|emb|CAO96407.1| Exodeoxyribonuclease I [Erwinia tasmaniensis Et1/99]
Length = 475
Score = 311 bits (797), Expect = 2e-81, Method: Composition-based stats.
Identities = 156/430 (36%), Positives = 248/430 (57%), Gaps = 15/430 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL++DYETFG + DRP QFAA+RTD+ N I P + YC+PA D+LP P A ++T I
Sbjct: 9 TFLFHDYETFGTSPSLDRPAQFAALRTDMDFNPIGEPEVFYCRPADDYLPQPEAVMVTGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+ E +F I ++F P T VGYN + FDDE++R +F+RN +PY W+
Sbjct: 69 TPQIARARGLNEAEFTQRIHQLFSAPNTCVVGYNNVRFDDEVSRNLFYRNFYDPYAWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
+ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N ++H+ AHDA+SDV A
Sbjct: 129 HGNSRWDLLDVMRACYALRPDGIVWPENDDGFPSFRLEHLTKANGVAHENAHDAMSDVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+ ++ PRL++F+ + R K+ + A I P +P +I+ MF + S + P+
Sbjct: 189 TIAMAKRVKEKQPRLYDFLYAHRNKQKIGALIDIPQMKPLVHISGMFGAARGNTSWIAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFK--EDIPISMIHLNRSPIV 609
HP N+N LIT +L D L D + +R+ L ++ +P+ ++H+N+ P+V
Sbjct: 249 AWHPDNRNALITCDLGGDMAPLLELDADALRERLYTRREELNGASPVPLKLVHINKCPVV 308
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK-----INNSDLEL 664
+ L R D N+ + + + + +K+ + I + D
Sbjct: 309 -APANTLRPEDAERIGIDRQRCLDNL---TLLRQHPEVREKVVTLFAEAQPFIPSED--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
+D +LYN F S D + I+R + + L ++ F + ++E+L+F +RARNF TL
Sbjct: 362 -VDAQLYNGFFSDADRNAMNIVRQTAAENLPALDLTFNDARIEKLLFRFRARNFPGTLDD 420
Query: 725 KELKRWKKYR 734
E + W ++R
Sbjct: 421 AEQQSWLQHR 430
>gi|425065398|ref|ZP_18468518.1| Exodeoxyribonuclease I [Pasteurella multocida subsp. gallicida
P1059]
gi|404383774|gb|EJZ80219.1| Exodeoxyribonuclease I [Pasteurella multocida subsp. gallicida
P1059]
Length = 481
Score = 311 bits (797), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 161/427 (37%), Positives = 243/427 (56%), Gaps = 7/427 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YDYE+FG++ DRP QFA IRTDI N I +P+M YCK D+LP P A L+T I
Sbjct: 14 SFFIYDYESFGVDPASDRPAQFAGIRTDINFNIISDPVMFYCKQTNDYLPAPEAVLVTGI 73
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C GIPE +FA I + F +P T +G+N I +DDE+TR+ F+RN I+PYE WK
Sbjct: 74 TPQECNEKGIPEPEFAERILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWK 133
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI W Y G PSF+LE L+ N + H AHDA++DV A
Sbjct: 134 NGNSRWDLLDLVRACYALRPEGINWAYDEEGMPSFRLEKLTKANGIEHSNAHDAMADVYA 193
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF + R KK V I P +++ M + + + P+
Sbjct: 194 TIAMAKLIKEKQPKLFQYFFENRGKKEVEKLIDTANLTPLVHVSGMLGNHRGNTTWIVPL 253
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLNRSP 607
HP N+N +I +L + L D N++R L K E +P+ ++H+N+ P
Sbjct: 254 AWHPTNQNAVICCDLAANITDLLNKDANELRQNLYTPKAELIEKGILPVPLKLVHINKCP 313
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
I+ +L N R D +N++ L+ +IF + + + +N++
Sbjct: 314 ILAPAKTLLPENAA-RLGIDRTFCLENLQRLKLSLSIRDKVTEIFNEER--HFTPSINVE 370
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
ELYN F D +AILR + +KL+ F++ ++ +L+F YRAR++ +L+ E
Sbjct: 371 TELYNGFFDYNDKNNMAILRHLPEEKLAEHGLAFKDARIPKLLFHYRARHYFNSLTRAEQ 430
Query: 728 KRWKKYR 734
+W+KYR
Sbjct: 431 IQWQKYR 437
>gi|421263345|ref|ZP_15714398.1| exonuclease I [Pasteurella multocida subsp. multocida str. P52VAC]
gi|401689675|gb|EJS85065.1| exonuclease I [Pasteurella multocida subsp. multocida str. P52VAC]
Length = 475
Score = 311 bits (797), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 163/430 (37%), Positives = 245/430 (56%), Gaps = 13/430 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YDYE+FG++ DRP QFA IRTDI N I +P+M YCK D+LP P A L+T I
Sbjct: 8 SFFIYDYESFGVDPASDRPAQFAGIRTDINFNIISDPVMFYCKQTNDYLPAPEAVLVTGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C GIPE +FA I + F +P T +G+N I +DDE+TR+ F+RN I+PYE WK
Sbjct: 68 TPQECNEKGIPEPEFAERILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWK 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI W Y G PSF+LE L+ N + H AHDA++DV A
Sbjct: 128 NGNSRWDLLDLVRACYALRPEGINWAYDEEGMPSFRLEKLTKANGIEHSNAHDAMADVYA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF + R KK V I P +++ M + + + P+
Sbjct: 188 TIAMAKLIKEKQPKLFQYFFENRGKKEVEKLIDTANLTPLVHVSGMLGNHRGNTTWIVPL 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLNRSP 607
HP N+N +I +L + L D N++R L K E +P+ ++H+N+ P
Sbjct: 248 AWHPTNQNAVICCDLAANITDLLNKDANELRQNLYTPKAELIEKGILPVPLKLVHINKCP 307
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKN---IKCASSILNNTYIWKKIFLDYKINNSDLEL 664
I+ +L N R D +N +K + SI + +IF + + + +
Sbjct: 308 ILAPAKTLLPENAA-RLGIDRTFCLENLQRLKLSPSIRDKV---TEIFNEER--HFAPSI 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N++ ELYN F D +AILR + +KL+ F++ ++ +L+F YRAR++ +L+
Sbjct: 362 NVETELYNGFFDYNDKNNMAILRHLPEEKLAEHGLAFKDARIPKLLFHYRARHYFNSLTR 421
Query: 725 KELKRWKKYR 734
E +W+KYR
Sbjct: 422 AEQIQWQKYR 431
>gi|423124655|ref|ZP_17112334.1| exodeoxyribonuclease I [Klebsiella oxytoca 10-5250]
gi|376400100|gb|EHT12713.1| exodeoxyribonuclease I [Klebsiella oxytoca 10-5250]
Length = 474
Score = 311 bits (797), Expect = 2e-81, Method: Composition-based stats.
Identities = 161/432 (37%), Positives = 243/432 (56%), Gaps = 13/432 (3%)
Query: 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKIT 372
FL++DYETFG + DRP QFAAIRTD LN + P + YC+ A D+LP P+A ++T IT
Sbjct: 10 FLFHDYETFGTSPSLDRPSQFAAIRTDEDLNIVGEPEVFYCRIADDYLPQPQAVMVTGIT 69
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
PQ G E FA + +F P T VGYN + FDDE+TR +F+RN +PY W++
Sbjct: 70 PQEANAKGDSEAAFARRVHDLFTVPKTCIVGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 129
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRAT 492
+ SRWDL++V++A Y L P GI WP G PSF+LEHL+ N + H AHDA++DV AT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENEEGLPSFRLEHLTVANGIEHSNAHDAMADVYAT 189
Query: 493 LGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPIC 552
+ +A+L++ PRLF+++ + R K+ + I P +P +++ MF + SL+ P+
Sbjct: 190 IAMAKLVKTQQPRLFDYLYTYRNKRKLATLIDVPQIKPLVHVSGMFGAARGNTSLVAPLA 249
Query: 553 IHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIVI 610
HP N+N +I +L D L D + +R+ L K+ + +PI ++HLN+ P V+
Sbjct: 250 WHPDNRNAVIMVDLAGDIAPLLDLDADTLRERLYTPKSELGDLPAVPIKLVHLNKCP-VL 308
Query: 611 SNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINN----SDLELNI 666
+ L R ++ N A + N + +K+ + SD N+
Sbjct: 309 AQQNTLRPQDADRLGINIQRCLDN---AQLLRANPQVREKVVAIFAEAEPFVPSD---NV 362
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
D +LYN F S D + I+ P L ++ F +K++E L+F YRARN+ TL E
Sbjct: 363 DAQLYNGFFSDADRAAMKIVLETEPHNLPALDITFADKRIERLLFNYRARNYPGTLDEAE 422
Query: 727 LKRWKKYRISRF 738
+RW ++R F
Sbjct: 423 QQRWLEHRREVF 434
>gi|378774319|ref|YP_005176562.1| exodeoxyribonuclease I [Pasteurella multocida 36950]
gi|356596867|gb|AET15593.1| exodeoxyribonuclease I [Pasteurella multocida 36950]
Length = 475
Score = 311 bits (797), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 161/427 (37%), Positives = 243/427 (56%), Gaps = 7/427 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YDYE+FG++ DRP QFA IRTDI N I +P+M YCK D+LP P A L+T I
Sbjct: 8 SFFIYDYESFGVDPASDRPAQFAGIRTDINFNIISDPVMFYCKQTNDYLPAPEAVLVTGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C GIPE +FA I + F +P T +G+N I +DDE+TR+ F+RN I+PYE WK
Sbjct: 68 TPQECNEKGIPEPEFAERILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWK 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI W Y G PSF+LE L+ N + H AHDA++DV A
Sbjct: 128 NGNSRWDLLDLVRACYALRPEGINWAYDEEGMPSFRLEKLTKANGIEHSNAHDAMADVYA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF + R KK V I P +++ M + + + P+
Sbjct: 188 TIAMAKLIKEKQPKLFQYFFENRGKKEVEKLIDTANLTPLVHVSGMLGNHRGNTTWIVPL 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLNRSP 607
HP N+N +I +L + L D N++R L K E +P+ ++H+N+ P
Sbjct: 248 AWHPTNQNAVICCDLAANITDLLNKDANELRQNLYTPKAELIEKGILPVPLKLVHINKCP 307
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
I+ +L N R D +N++ L+ +IF + + + +N++
Sbjct: 308 ILAPAKTLLPENAA-RLGIDRTFCLENLQRLKLSLSIRDKVTEIFNEER--HFTPSINVE 364
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
ELYN F D +AILR + +KL+ F++ ++ +L+F YRAR++ +L+ E
Sbjct: 365 TELYNGFFDYNDKNNMAILRHLPEEKLAEHGLAFKDARIPKLLFHYRARHYFNSLTRAEQ 424
Query: 728 KRWKKYR 734
+W+KYR
Sbjct: 425 IQWQKYR 431
>gi|331004853|ref|ZP_08328270.1| Exodeoxyribonuclease I [gamma proteobacterium IMCC1989]
gi|330421307|gb|EGG95556.1| Exodeoxyribonuclease I [gamma proteobacterium IMCC1989]
Length = 476
Score = 311 bits (796), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 168/474 (35%), Positives = 262/474 (55%), Gaps = 18/474 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
T W+DYET+G + +D+P QFA IRTD LN + P+++YC+P+ D LP P ACL+T I
Sbjct: 3 TLYWHDYETWGASPSQDKPSQFAGIRTDEDLNIVGEPLVIYCQPSSDCLPQPEACLLTGI 62
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L G+ E F I + + T VGYN+I FDDE+TR+ +RN +PYEREW+
Sbjct: 63 TPQKALKEGLSEPIFFEKIHQQLAQEKTCGVGYNSIRFDDEMTRYGLYRNFYDPYEREWQ 122
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD+I++++ Y L P + WP ++G SFKLE LS N L H AHDALSDV A
Sbjct: 123 NGNSRWDIIDMVRLCYALRPETLCWPTNDSGVVSFKLELLSKANGLLHDAAHDALSDVYA 182
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+LI+ P L+ + SLR K V A + +P +++ F LM P+
Sbjct: 183 TIALAKLIKQKQPELYQYAYSLRDKNKVKALMNVAQRKPILHVSSRFPVSRGCAGLMLPL 242
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN +I ++L DP L +I + L K+ E IP+ IH N+SP+
Sbjct: 243 AEHPTNKNSVIAYDLSEDPTPLLELSAEEIAERLYVKQADLPEGASRIPLKEIHFNKSPM 302
Query: 609 VISNLKVLSSNLMFRYKFD---LNCAFKNIKCA--SSILNNTYIWKKIFLDYKINNSDLE 663
V + +K+L R D ++ ++ A +S L + + ++ +
Sbjct: 303 V-ATVKLLDDQSAQRLGIDKSTCEAHWQQLRAADITSKLQDVFSTQRFPPKH-------- 353
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
+ +++LY+ FI+ D + +R P+ LS+ + ++ +L+ L+F YRAR++ +TL+
Sbjct: 354 -DPEQQLYDGFINSHDKHLMLAIRGAEPETLSHYSSQLKDPRLKALLFRYRARHYPQTLN 412
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYG 777
E ++W+++ SR ++ + Y E S E + +I++ LL YG
Sbjct: 413 ELEKQQWQEWVYSRLTDETAGASIVLDEYFERLSAYTDDIEANQQIVDDLLAYG 466
>gi|269966310|ref|ZP_06180397.1| exodeoxyribonuclease I [Vibrio alginolyticus 40B]
gi|269829049|gb|EEZ83296.1| exodeoxyribonuclease I [Vibrio alginolyticus 40B]
Length = 473
Score = 311 bits (796), Expect = 2e-81, Method: Composition-based stats.
Identities = 164/471 (34%), Positives = 266/471 (56%), Gaps = 20/471 (4%)
Query: 306 LHNGNS-TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPR 364
+H N TF ++DYET+G N +DR QFA +RTD N I P+++YC+P D+LP P
Sbjct: 1 MHQDNQPTFFFFDYETWGTNPAKDRSSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPE 60
Query: 365 ACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLIN 424
A LIT ITPQ + G+ E +F + I KP T S+GYN+I FDDE+TR+ +RN I+
Sbjct: 61 AALITGITPQKTVQEGLSEPEFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFID 120
Query: 425 PYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHD 484
PY W+N SRWDL++V++A + L P G+ WP +G SFKLEHLS N + H AHD
Sbjct: 121 PYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFTSFKLEHLSVANGIEHSNAHD 180
Query: 485 ALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSY 544
A++DV AT+ +A+ ++ P+LF++ S+R+K+ + + P +++ M + Y
Sbjct: 181 AMADVVATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQY 240
Query: 545 ISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIH 602
S + P+ HP N N +IT +L DP+ L ++ + L K+ E +P+ ++H
Sbjct: 241 TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVH 300
Query: 603 LNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF----LDYKIN 658
LN+ PI ++ K L++ D N+ + + + I +K+ ++ K +
Sbjct: 301 LNKCPI-LAPAKTLTAENAESIGIDRQQCLANL---ALLRQHPEIREKLISLFSVERKFD 356
Query: 659 NSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNF 718
SD ++D +LY+ F S D + I+R P L+ ++ F++K+++ L+F YRARNF
Sbjct: 357 KSD---DVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARNF 413
Query: 719 IETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI 769
TL +E +RW + F ++ I + L +E+L+ + + KI
Sbjct: 414 PGTLDEQEQRRWALHCREVFESQ------IEEYMLNLENLVHEHESDEKKI 458
>gi|172062801|ref|YP_001810452.1| DNA polymerase I [Burkholderia ambifaria MC40-6]
gi|171995318|gb|ACB66236.1| DNA polymerase I [Burkholderia ambifaria MC40-6]
Length = 917
Score = 311 bits (796), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 142/270 (52%), Positives = 197/270 (72%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L LQ+ IH V+A+GWP+L+++GVEADDVIGTLA++A +H +
Sbjct: 75 DLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAREA-ERHGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLVS+++ L+N N+ DR +I++FGV PE+I+DY +LIGD DN+
Sbjct: 134 NVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L+QY+SL+ +I +A IKGV+G NLR AL++LP + ++T++T CD
Sbjct: 194 PGVEKCGPKTAVKWLSQYDSLDGVIEHAGEIKGVVGDNLRRALDFLPLGRTLVTVETACD 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L ++ SI SL + LL +F +Y
Sbjct: 254 LAPHLESIEASLRTDGEARDLLRDIFARYG 283
>gi|424031589|ref|ZP_17771023.1| exodeoxyribonuclease I [Vibrio cholerae HENC-01]
gi|408877310|gb|EKM16376.1| exodeoxyribonuclease I [Vibrio cholerae HENC-01]
Length = 473
Score = 311 bits (796), Expect = 2e-81, Method: Composition-based stats.
Identities = 160/468 (34%), Positives = 267/468 (57%), Gaps = 14/468 (2%)
Query: 306 LHNGNS-TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPR 364
+H N TF ++DYET+G + +DRP QFA +RTD N I P+++YC+P D+LP P
Sbjct: 1 MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPE 60
Query: 365 ACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLIN 424
A LIT ITPQ + G+PE +F + I KP T S+GYN+I FDDE+TR+ +RN I+
Sbjct: 61 AALITGITPQKAMQEGLPEPEFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFID 120
Query: 425 PYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHD 484
PY W+N SRWDL++V++A + L P G+ WP + G SFKLEHLS N + H AHD
Sbjct: 121 PYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFTSFKLEHLSVANGIEHSNAHD 180
Query: 485 ALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSY 544
A++DV AT+ +A+ ++ P+LF++ S+R K+ + + P +++ M + Y
Sbjct: 181 AMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY 240
Query: 545 ISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIH 602
S + P+ HP N N +IT +L DP+ L ++++ L K++ + +P+ ++H
Sbjct: 241 TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVH 300
Query: 603 LNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL 662
LN+ PI ++ K L++ D N+ + + + I +K+ + I
Sbjct: 301 LNKCPI-LAPAKTLTAENAEVIGIDRQQCLNNL---ALLRQHPEIREKLISLFSIEREFE 356
Query: 663 ELN-IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIET 721
+ N +D +LY+ F S D + I+R P L+ ++ F++K+++ L+F YRAR++ T
Sbjct: 357 KSNDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARHYAGT 416
Query: 722 LSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI 769
L +E +RW ++ F ++ I + + +E+L+ + + KI
Sbjct: 417 LDEQEQRRWAQHCREVFESQ------IEEYMMNLENLVHEHESDEKKI 458
>gi|167615322|ref|ZP_02383957.1| DNA polymerase I [Burkholderia thailandensis Bt4]
Length = 926
Score = 311 bits (796), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 143/270 (52%), Positives = 196/270 (72%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG I MLR++ K+ A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKDVSAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAK+A +H +
Sbjct: 75 DLYADYKAHRPPMPPDLALQIEPIHSAVRALGWPLLMIEGVEADDVIGTLAKRA-EQHGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLV++++ LIN N+ DR ++++FGV PE+IVDY SLIGD DN+
Sbjct: 134 NVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L QY SL+ ++ +A IKGV+G NLR AL++LP +K++T++T C+
Sbjct: 194 PGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVVGDNLRRALDFLPLARKLVTVETACE 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L ++ S SL + L ++F+ Y
Sbjct: 254 LAPHVESFDASLATDGEGRDALREIFSTYG 283
>gi|83716432|ref|YP_438805.1| DNA polymerase I [Burkholderia thailandensis E264]
gi|257141887|ref|ZP_05590149.1| DNA polymerase I [Burkholderia thailandensis E264]
gi|83650257|gb|ABC34321.1| DNA polymerase I [Burkholderia thailandensis E264]
Length = 926
Score = 311 bits (796), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 143/270 (52%), Positives = 196/270 (72%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG I MLR++ K+ A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKDVSAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAK+A +H +
Sbjct: 75 DLYADYKAHRPPMPPDLALQIEPIHSAVRALGWPLLMIEGVEADDVIGTLAKRA-EQHGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLV++++ LIN N+ DR ++++FGV PE+IVDY SLIGD DN+
Sbjct: 134 NVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L QY SL+ ++ +A IKGV+G NLR AL++LP +K++T++T C+
Sbjct: 194 PGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVVGDNLRRALDFLPLARKLVTVETACE 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L ++ S SL + L ++F+ Y
Sbjct: 254 LAPHVESFDASLATDGEGRDALREIFSTYG 283
>gi|343511802|ref|ZP_08748955.1| exonuclease I [Vibrio scophthalmi LMG 19158]
gi|342797110|gb|EGU32766.1| exonuclease I [Vibrio scophthalmi LMG 19158]
Length = 474
Score = 311 bits (796), Expect = 2e-81, Method: Composition-based stats.
Identities = 162/466 (34%), Positives = 267/466 (57%), Gaps = 15/466 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYET+G + +DRP QFA +RTD+ N I P+++YC+P D+LP A LIT I
Sbjct: 8 TFFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPSDYLPGVEAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
+PQ + G+ E +F I + P TIS+GYN+I FDDE+TR+ +RN +PY W+
Sbjct: 68 SPQLAASKGLIEPEFIRQIHEQLATPNTISLGYNSIRFDDEVTRYTCYRNFFDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++A + L P GI WP + G SFKLEHLS N + H AHDA++DV A
Sbjct: 128 NGNSRWDLLDVMRACHALRPEGIEWPENDEGYISFKLEHLSVANGIEHANAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+ I+ P+LF++ L++R K+ + + P +++ M + +Y S + P+
Sbjct: 188 TIELAKKIKAAQPKLFDYFLTMRHKRKLNELVDIVNMTPLMHVSGMLGRECNYTSWIVPV 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN +I +L DP+ D N +++ L K + D +P+ ++HLN+ PI
Sbjct: 248 AWHPTNKNAVIVVDLAKDPQVLFDLDENALKERLYTKHSDLAPDELPVPVKLVHLNKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++ + D +N++ + + I +K+ + + + ++D
Sbjct: 308 -LAPAKTLTAENADKIGIDREQCLQNLQV---LRQHPEIREKLIGLFAVEREYEKSADVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LY+ F S D + I+R P+ L+ ++ F + ++E L+F YRARNF TL+ +E
Sbjct: 364 TQLYDGFFSPADRAAMDIVRQTEPEHLAALDITFSDARIEPLLFRYRARNFPWTLTEQEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNAL 773
RW + F ++ ++ + L E+L+ + +E DTK + L
Sbjct: 424 LRWNSHCQDYFQSR------MDEYMLNFENLVHE-HESDTKKITLL 462
>gi|167577153|ref|ZP_02370027.1| DNA polymerase I [Burkholderia thailandensis TXDOH]
Length = 926
Score = 311 bits (796), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 143/270 (52%), Positives = 196/270 (72%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG I MLR++ K+ A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKDVSAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAK+A +H +
Sbjct: 75 DLYADYKAHRPPMPPDLALQIEPIHSAVRALGWPLLMIEGVEADDVIGTLAKRA-EQHGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLV++++ LIN N+ DR ++++FGV PE+IVDY SLIGD DN+
Sbjct: 134 NVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L QY SL+ ++ +A IKGV+G NLR AL++LP +K++T++T C+
Sbjct: 194 PGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVVGDNLRRALDFLPLARKLVTVETACE 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L ++ S SL + L ++F+ Y
Sbjct: 254 LAPHVESFDASLATDGEGRDALREIFSTYG 283
>gi|115357994|ref|YP_775132.1| DNA polymerase I [Burkholderia ambifaria AMMD]
gi|115283282|gb|ABI88798.1| DNA polymerase I [Burkholderia ambifaria AMMD]
Length = 917
Score = 310 bits (795), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 142/270 (52%), Positives = 197/270 (72%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L LQ+ IH V+A+GWP+L+++GVEADDVIGTLA++A +H +
Sbjct: 75 DLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAREA-ERHGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLVS+++ L+N N+ DR +I++FGV PE+I+DY +LIGD DN+
Sbjct: 134 NVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L+QY+SL+ +I +A IKGV+G NLR AL++LP + ++T++T CD
Sbjct: 194 PGVEKCGPKTAVKWLSQYDSLDGVIEHAGEIKGVVGDNLRRALDFLPLGRTLVTVETACD 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L ++ SI SL + LL +F +Y
Sbjct: 254 LAPHLESIEASLKTDGEARHLLRDIFARYG 283
>gi|85059110|ref|YP_454812.1| exonuclease I [Sodalis glossinidius str. 'morsitans']
gi|84779630|dbj|BAE74407.1| exonuclease I [Sodalis glossinidius str. 'morsitans']
Length = 473
Score = 310 bits (795), Expect = 3e-81, Method: Composition-based stats.
Identities = 163/479 (34%), Positives = 268/479 (55%), Gaps = 32/479 (6%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL +DYETFG DRP QFA IR D T+ P + +C+PA D+LPDP A +IT I
Sbjct: 9 TFLVHDYETFGKYPALDRPAQFAGIRADSQFETLGEPEVFFCRPADDYLPDPEAVMITGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L +G+ E +FA I ++F P T +GYN + FDDE++R +F+RN +PY W+
Sbjct: 69 TPQQALRDGVTEAEFARRIHQLFSVPDTCILGYNNVRFDDEVSRNLFYRNFYDPYGWSWQ 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
S WDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV A
Sbjct: 129 QGNSCWDLLDVVRACYALRPNGIEWPLNDDGLPSFRLEHLTRANGIEHANAHDAMADVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
TL +A+L+R P+LF+++ R K+ + + + +P +++ MF + + + P+
Sbjct: 189 TLAMAKLMRQAQPKLFDYLYRHRGKRQLKSLVDIATMKPLVHVSGMFGAARGNTAWIAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N N LI +L D + D + +R L ++++ ++ +P+ +++LN+ P++
Sbjct: 249 AWHPDNPNALIVCDLSGDMQVLADLDSDALRTRLYTRRDALGDNTAVPLKLVYLNKCPVL 308
Query: 610 --ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKI---------- 657
+ L+ + + + + +C N T++ + L K+
Sbjct: 309 APANTLQPMDAERL---------GIQRQRCLD---NLTWLRARPELREKVVALFAESAPF 356
Query: 658 NNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARN 717
+SD ++D +LY+ F S D + I+ + +P+ L ++ F + +L+ L+F YRARN
Sbjct: 357 KSSD---DVDAQLYDGFFSDADRAAMEIILATAPENLPALDISFVDARLKPLLFRYRARN 413
Query: 718 FIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMY 776
F TL + E RW ++R +RF + Y + LE L + +EH T++L AL Y
Sbjct: 414 FPHTLDHNEQLRWLEHRKTRFTQPRLEAY---VQQLETLYLAHEGDEHKTRLLRALFEY 469
>gi|419889846|ref|ZP_14410187.1| exonuclease I, partial [Escherichia coli O111:H8 str. CVM9570]
gi|388356516|gb|EIL21241.1| exonuclease I, partial [Escherichia coli O111:H8 str. CVM9570]
Length = 459
Score = 310 bits (795), Expect = 3e-81, Method: Composition-based stats.
Identities = 161/426 (37%), Positives = 242/426 (56%), Gaps = 13/426 (3%)
Query: 319 ETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKITPQFCLN 378
ETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT ITPQ
Sbjct: 1 ETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARA 60
Query: 379 NGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKNNCSRWD 438
G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W+++ SRWD
Sbjct: 61 KGENEATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWD 120
Query: 439 LINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRATLGLARL 498
L++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV AT+ +A+L
Sbjct: 121 LLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKL 180
Query: 499 IRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPICIHPMNK 558
++ PRLF+++ + R K ++A I P +P +++ MF + S + P+ HP N+
Sbjct: 181 VKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLAWHPENR 240
Query: 559 NILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIVISNLKVL 616
N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P V++ L
Sbjct: 241 NAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP-VLAQANTL 299
Query: 617 SSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLELNIDEELYN 672
R + N+K + N + +K+ + SD N+D +LYN
Sbjct: 300 RPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD---NVDAQLYN 353
Query: 673 NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKRWKK 732
F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y E +RW +
Sbjct: 354 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 413
Query: 733 YRISRF 738
+R F
Sbjct: 414 HRRQVF 419
>gi|206562759|ref|YP_002233522.1| DNA polymerase I [Burkholderia cenocepacia J2315]
gi|198038799|emb|CAR54761.1| DNA polymerase I [Burkholderia cenocepacia J2315]
Length = 917
Score = 310 bits (795), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 142/270 (52%), Positives = 197/270 (72%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L LQ+ IH V+A+GWP+L+++GVEADDVIGTLA++A +H +
Sbjct: 75 DLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAREA-ERHGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLV+ ++ L+N N+ DR +I++FGV PE+I+DY +LIGD DN+
Sbjct: 134 NVIVSTGDKDLAQLVTERVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L+QY SL+ +I +A +IKGV+G NLR AL++LP +K++T+ T CD
Sbjct: 194 PGVEKCGPKTAVKWLSQYESLDGVIAHAADIKGVVGDNLRRALDFLPLGRKLVTVDTSCD 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L ++ SI SL + +LL +F +Y
Sbjct: 254 LAPHLESIEASLKTDGEARELLRDIFARYG 283
>gi|149912138|ref|ZP_01900724.1| putative exonuclease I [Moritella sp. PE36]
gi|149804786|gb|EDM64828.1| putative exonuclease I [Moritella sp. PE36]
Length = 480
Score = 310 bits (795), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 167/472 (35%), Positives = 256/472 (54%), Gaps = 15/472 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF W+DYETFGL+ DRP QFA IRTD+ N I P M YC+ + D+LP P A LIT I
Sbjct: 14 TFYWHDYETFGLSPSLDRPSQFAGIRTDMDFNVIGEPDMFYCRQSDDYLPSPEATLITGI 73
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+ E +F+ IE F T +GYN I FDDE+TR +F+RN +PY WK
Sbjct: 74 TPQKTQAEGVNEAEFSKRIEAQFSHKNTCIIGYNNIRFDDEVTRNIFYRNFYDPYAHTWK 133
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
+ SRWD+I++++A Y L P GI WP ++G PS +LE L+ N + H AHDA SDV A
Sbjct: 134 DGNSRWDIIDLMRACYALRPEGIVWPENDDGLPSMRLELLTKANGIEHANAHDATSDVYA 193
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ P+LF+F+ +LR K+ V + I P +++ MF + + S + P+
Sbjct: 194 TIAMAKLVKEKQPKLFDFLFNLRSKRKVESLIDIINMTPLVHVSGMFGADRGFTSWVVPL 253
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIV 609
HP N N +I +L D L +++R+ L K + IP+ +IH+N+ P++
Sbjct: 254 AWHPTNNNAVIVADLAQDITPLLELSADELRERLYTPKKDLGDLAPIPLKLIHINKCPVL 313
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKC---ASSILNNTYIWKKIFLDYKINNSDLELNI 666
+L N R D N N+K ++++ N ++ +Y +N N+
Sbjct: 314 APAKTLLPENAE-RLGIDRNACLANLKRLKESATLRENVVGVYQVDREYPKSN-----NV 367
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
D +Y+ F S D ILR +P++L + +++ EL F YRARNF LS E
Sbjct: 368 DAMIYDGFFSAGDKANFEILRETAPEQLVGLQLKISDERFNELFFRYRARNFPHLLSMPE 427
Query: 727 LKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGK 778
++W + S + ++ L+ ++ +E K+L L +YG+
Sbjct: 428 QQKWLNHCRSVLEDSAPAYFD----RLDALAIENSHDERKMKLLQQLYLYGQ 475
>gi|73540576|ref|YP_295096.1| DNA polymerase I [Ralstonia eutropha JMP134]
gi|72117989|gb|AAZ60252.1| DNA polymerase I [Ralstonia eutropha JMP134]
Length = 941
Score = 310 bits (795), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 138/270 (51%), Positives = 200/270 (74%), Gaps = 4/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++ALPD+RN + P GA+YG I MLRKL +Y A Y AC+FDAKGK FR+
Sbjct: 11 VDGSSYLYRAYHALPDLRNGEGLPTGAIYGMINMLRKLRNDYPAEYSACVFDAKGKTFRD 70
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
+YP+YK R MP +L QI IH+ V+A+GWPI++++GVEADDVIGTLA+QA + +
Sbjct: 71 EMYPAYKEHRPSMPEDLARQIEPIHEAVRALGWPIVVVEGVEADDVIGTLARQAA-EQGV 129
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
+ ++ST DKD+AQLV++++ L+N + ++ D + ++FGV PE+IVDY SLIGD DN+
Sbjct: 130 RTVVSTGDKDLAQLVNDQVTLVNTMSGEVLDPAGVNAKFGVPPERIVDYLSLIGDAVDNV 189
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV K+GPKTAVK L ++ +L+NI+ A IKGV+G+NLR L+WLPK ++++T+KTDCD
Sbjct: 190 PGVPKVGPKTAVKWLTEHGTLDNIMAGAAGIKGVVGENLRNTLDWLPKARELVTVKTDCD 249
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L+ + +L +D++ L+ F +Y
Sbjct: 250 LSAAVADF-HALREIGEDKEKLIAFFTRYG 278
>gi|343516704|ref|ZP_08753736.1| exonuclease I [Vibrio sp. N418]
gi|342795762|gb|EGU31471.1| exonuclease I [Vibrio sp. N418]
Length = 474
Score = 310 bits (795), Expect = 3e-81, Method: Composition-based stats.
Identities = 162/466 (34%), Positives = 267/466 (57%), Gaps = 15/466 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYET+G + +DRP QFA +RTD+ N I P+++YC+P D+LP A LIT I
Sbjct: 8 TFFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPSDYLPGVEAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
+PQ + G+ E +F I + P TIS+GYN+I FDDE+TR+ +RN +PY W+
Sbjct: 68 SPQLAASKGLIEPEFIRQIHEQLATPNTISLGYNSIRFDDEVTRYTCYRNFFDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++A + L P GI WP + G SFKLEHLS N + H AHDA++DV A
Sbjct: 128 NGNSRWDLLDVMRACHALRPEGIEWPENDEGYISFKLEHLSVANGIEHANAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+ I+ P+LF++ L++R K+ + + P +++ M + +Y S + P+
Sbjct: 188 TIELAKKIKAAQPKLFDYFLTMRHKRKLNELVDIVNMTPLMHVSGMLGRECNYTSWIVPV 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN +I +L DP+ D + +++ L K + D +P+ ++HLN+ PI
Sbjct: 248 AWHPTNKNAVIVVDLAKDPQVLFDLDGDALKERLYTKHSDLAPDELPVPVKLVHLNKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++ + D +N++ I + I +K+ + + + ++D
Sbjct: 308 -LAPAKTLTAENADKIGIDREQCLQNLQV---IRQHPEIREKLIGLFAVEREYEKSADVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LY+ F S D + I+R P+ L+ ++ F + ++E L+F YRARNF TL+ +E
Sbjct: 364 TQLYDGFFSPADRAAMDIVRQTEPEHLAALDITFSDARIEPLLFRYRARNFPWTLTEQEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNAL 773
RW + F ++ ++ + L E+L+ + +E DTK + L
Sbjct: 424 LRWNSHCQDYFQSR------MDEYMLNFENLVHE-HESDTKKITLL 462
>gi|444361867|ref|ZP_21162445.1| DNA-directed DNA polymerase [Burkholderia cenocepacia BC7]
gi|444372706|ref|ZP_21172139.1| DNA-directed DNA polymerase [Burkholderia cenocepacia K56-2Valvano]
gi|443592954|gb|ELT61718.1| DNA-directed DNA polymerase [Burkholderia cenocepacia K56-2Valvano]
gi|443597982|gb|ELT66382.1| DNA-directed DNA polymerase [Burkholderia cenocepacia BC7]
Length = 920
Score = 310 bits (795), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 142/270 (52%), Positives = 197/270 (72%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK FR+
Sbjct: 18 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEYSACVFDAKGKTFRD 77
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L LQ+ IH V+A+GWP+L+++GVEADDVIGTLA++A +H +
Sbjct: 78 DLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAREA-ERHGM 136
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLV+ ++ L+N N+ DR +I++FGV PE+I+DY +LIGD DN+
Sbjct: 137 NVIVSTGDKDLAQLVTERVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALIGDTVDNV 196
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L+QY SL+ +I +A +IKGV+G NLR AL++LP +K++T+ T CD
Sbjct: 197 PGVEKCGPKTAVKWLSQYESLDGVIAHAADIKGVVGDNLRRALDFLPLGRKLVTVDTSCD 256
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L ++ SI SL + +LL +F +Y
Sbjct: 257 LAPHLESIEASLKTDGEARELLRDIFARYG 286
>gi|424040996|ref|ZP_17779029.1| exodeoxyribonuclease I [Vibrio cholerae HENC-02]
gi|408891230|gb|EKM29101.1| exodeoxyribonuclease I [Vibrio cholerae HENC-02]
Length = 473
Score = 310 bits (795), Expect = 3e-81, Method: Composition-based stats.
Identities = 160/471 (33%), Positives = 269/471 (57%), Gaps = 20/471 (4%)
Query: 306 LHNGNS-TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPR 364
+H N TF ++DYET+G + +DRP QFA +RTD N I P+++YC+P D+LP P
Sbjct: 1 MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPE 60
Query: 365 ACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLIN 424
A LIT ITPQ + G+PE +F + I KP T S+GYN+I FDDE+TR+ +RN I+
Sbjct: 61 AALITGITPQKAMQEGLPEPEFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFID 120
Query: 425 PYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHD 484
PY W+N SRWDL++V++A + L P G+ WP + G SFKLEHLS N + H AHD
Sbjct: 121 PYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFTSFKLEHLSVANGIEHSNAHD 180
Query: 485 ALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSY 544
A++DV AT+ +A+ ++ P+LF++ S+R K+ + + P +++ M + Y
Sbjct: 181 AMADVIATIEMAKKVKAAQPKLFDYFYSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY 240
Query: 545 ISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIH 602
S + P+ HP N N +IT +L DP+ L ++++ L K++ + +P+ ++H
Sbjct: 241 TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVH 300
Query: 603 LNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF----LDYKIN 658
LN+ PI ++ K L++ D N+ + + + I +K+ ++ +
Sbjct: 301 LNKCPI-LAPAKTLTAENAEVIGIDRQQCLNNL---ALLRQHPEIREKLISLFSIEREFE 356
Query: 659 NSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNF 718
SD ++D +LY+ F S D + I+R P L+ ++ F++K+++ L+F YRAR++
Sbjct: 357 KSD---DVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARHY 413
Query: 719 IETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI 769
TL +E +RW ++ F ++ I + + +E+L+ + + KI
Sbjct: 414 AGTLDEQEQRRWAQHCREVFESQ------IEEYMMNLENLVHEHESDEKKI 458
>gi|167923694|ref|ZP_02510785.1| DNA polymerase I [Burkholderia pseudomallei BCC215]
Length = 923
Score = 310 bits (795), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 143/270 (52%), Positives = 195/270 (72%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG + MLR++ K+ A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIVNMLRRMRKDVSAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAKQA + +
Sbjct: 75 DLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAKQA-EQRGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLV++++ LIN N+ DR ++++FGV PE+IVDY SLIGD DN+
Sbjct: 134 NVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L QY SL+ ++ +A IKGV+G NLR AL++LP +K++T++T C+
Sbjct: 194 PGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVVGDNLRRALDFLPLARKLVTVETGCE 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L ++ S SL + L ++F KY
Sbjct: 254 LAPHVESFDASLATDGEGRDALREIFAKYG 283
>gi|397658822|ref|YP_006499524.1| exodeoxyribonuclease I [Klebsiella oxytoca E718]
gi|394347073|gb|AFN33194.1| Exodeoxyribonuclease I [Klebsiella oxytoca E718]
Length = 474
Score = 310 bits (795), Expect = 3e-81, Method: Composition-based stats.
Identities = 162/432 (37%), Positives = 246/432 (56%), Gaps = 13/432 (3%)
Query: 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKIT 372
FL++DYETFG + DRP QFAAIRTD LN + P + YC+ A D+LP P+A ++T IT
Sbjct: 10 FLFHDYETFGTSPSLDRPSQFAAIRTDEDLNIVGEPEVFYCRLADDYLPQPQAVMVTGIT 69
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
PQ G E FA + +F P T VGYN + FDDE+TR + +RN +PY W++
Sbjct: 70 PQEANAKGDNEAAFARRVHDLFTVPKTCIVGYNNVRFDDEVTRNILYRNFYDPYAWSWQH 129
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRAT 492
+ SRWDL++V++A Y L P GI WP G PSF+LEHL+ N + H AHDA++DV AT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENEEGLPSFRLEHLTVANGIEHSNAHDAMADVYAT 189
Query: 493 LGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPIC 552
+ +A+L++ PRLF+++ + R K+ + I P +P +++ MF + SL+ P+
Sbjct: 190 IAMAKLVKTQQPRLFDYLYAHRNKRKLATLIDAPQIKPLVHVSGMFGAARGNTSLVAPLA 249
Query: 553 IHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIVI 610
HP N+N +I +L D L D + +R+ L K+ + +PI ++HLN+ P V+
Sbjct: 250 WHPDNRNAVIMVDLAGDIAPLLELDADTLRERLYTPKSELGDLPAVPIKLVHLNKCP-VL 308
Query: 611 SNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYK-INNSDLELNI 666
+ L R ++ +N A + N + +K IF + + SD N+
Sbjct: 309 AQQNTLRPQDADRLGINIQRCLEN---AQLLRANPQVREKAVAIFAEAEPFVPSD---NV 362
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
D +LYN F S D + I+ P+ L ++ F +K++E L+F YRARN+ TL E
Sbjct: 363 DTQLYNGFFSDADRAAMKIVLETEPRNLPALDITFADKRIERLLFNYRARNYPGTLDEAE 422
Query: 727 LKRWKKYRISRF 738
+RW ++R F
Sbjct: 423 QQRWLEHRRQVF 434
>gi|171321673|ref|ZP_02910595.1| DNA polymerase I [Burkholderia ambifaria MEX-5]
gi|171093053|gb|EDT38279.1| DNA polymerase I [Burkholderia ambifaria MEX-5]
Length = 917
Score = 310 bits (795), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 142/270 (52%), Positives = 196/270 (72%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L LQ+ IH V+A+GWP+L++ GVEADDVIGTLA++A +H +
Sbjct: 75 DLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVDGVEADDVIGTLAREA-ERHGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLVS+++ L+N N+ DR +I++FGV PE+I+DY +LIGD DN+
Sbjct: 134 NVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L+QY+SL+ +I +A IKGV+G NLR AL++LP + ++T++T CD
Sbjct: 194 PGVEKCGPKTAVKWLSQYDSLDGVIEHAGEIKGVVGDNLRRALDFLPLGRTLVTVETACD 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L ++ SI SL + LL +F +Y
Sbjct: 254 LAPHLESIEASLKTDGEARDLLRDIFARYG 283
>gi|386834266|ref|YP_006239581.1| exodeoxyribonuclease I [Pasteurella multocida subsp. multocida str.
3480]
gi|385200967|gb|AFI45822.1| exodeoxyribonuclease I [Pasteurella multocida subsp. multocida str.
3480]
Length = 481
Score = 310 bits (794), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 164/431 (38%), Positives = 245/431 (56%), Gaps = 15/431 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YDYE+FG++ DRP QFA IRTDI N I +P+M YCK D+LP P A L+T I
Sbjct: 14 SFFIYDYESFGVDPASDRPAQFAGIRTDINFNIISDPVMFYCKQTNDYLPAPEAVLVTGI 73
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C GIPE +FA I + F +P T +G+N I +DDE+TR+ F+RN I+PYE WK
Sbjct: 74 TPQECNEKGIPEPEFAERILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWK 133
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI W Y G PSF+LE L+ N + H AHDA++DV A
Sbjct: 134 NGNSRWDLLDLVRACYALRPEGINWAYDEEGMPSFRLEKLTKANGIEHSNAHDAMADVYA 193
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF + R KK V I P +++ M + + + P+
Sbjct: 194 TIAMAKLIKEKQPKLFQYFFENRGKKEVEKLIDTANLTPLVHVSGMLGNHRGNTTWIVPL 253
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLNRSP 607
HP N+N +I +L + L D N++R L K E +P+ ++H+N+ P
Sbjct: 254 AWHPTNQNAVICCDLAANITDLLNKDANELRQNLYTPKAELIEKGILPVPLKLVHINKCP 313
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKN---IKCASSILNNTYIWKKIF-LDYKINNSDLE 663
I+ +L N R D +N +K + SI + +IF ++ S
Sbjct: 314 ILAPAKTLLPENAA-RLGIDRTFCLENLQRLKLSPSIRDKV---TEIFNEEWHFAPS--- 366
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
+N++ ELYN F D +AILR + +KL+ F++ ++ +L+F YRAR++ +L+
Sbjct: 367 INVETELYNGFFDYNDKNNMAILRHLPEEKLAEHGLAFKDARIPKLLFHYRARHYFNSLT 426
Query: 724 YKELKRWKKYR 734
E +W+KYR
Sbjct: 427 RAEQIQWQKYR 437
>gi|374314215|ref|YP_005060644.1| exodeoxyribonuclease I [Serratia symbiotica str. 'Cinara cedri']
gi|363988441|gb|AEW44632.1| exodeoxyribonuclease I [Serratia symbiotica str. 'Cinara cedri']
Length = 472
Score = 310 bits (794), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 175/478 (36%), Positives = 269/478 (56%), Gaps = 22/478 (4%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
+ F +DYETFG + DRP QFA +RTD+ N I+ P+++YC PA D+LPDP A LIT
Sbjct: 2 TRFYIHDYETFGKSPSMDRPAQFAGVRTDMDFNIIEEPLVIYCAPADDYLPDPEAVLITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ+ G+ E +FA I +F P T +GYN I FDDE++R +F+RN +PY W
Sbjct: 62 ITPQYACAKGVNEAEFARQIHHVFSMPNTCILGYNNIGFDDEVSRNIFYRNFYDPYAYSW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+N SRWDL+NV++A Y L P G+ WP +G PSF+L L+ +N + H +AHDA SDV
Sbjct: 122 QNGNSRWDLLNVVRACYALRPDGVLWPKNKDGLPSFRLADLTRINGIKHTQAHDAWSDVC 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+ ++ PRLFNF+L R K + I P +++ +F + +S + P
Sbjct: 182 ATIAVAKQVKRAQPRLFNFLLQYRSKYKLNTLIDIDTMTPLVHVSAIFGAVRGNVSWVAP 241
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSF---KEDIPISMIHLNRSP 607
+ HP+N N +I +L D L + N++R+ L + + K +P+ ++++N+ P
Sbjct: 242 LAWHPVNNNAVIMCDLAGDLTCLLTLNANQLRELLYTRYEALAVNKPSVPLMLVYINKCP 301
Query: 608 IVISNLKVLSSNLMFRYKFD-LNCA--FKNIKCASSILNNTYIWKKIFLDYK-INNSDLE 663
V++ K L R D LNC + ++ + IL +F ++K SD
Sbjct: 302 -VLAPSKTLLPEHAERLGIDRLNCQQNLQILRKSPQILRKVI---AVFAEHKPYKGSD-- 355
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
NID LY+ F S D ++I++ PK LS +N + +++EL+F +RARN+ TL+
Sbjct: 356 -NIDARLYDGFFSDTDRAVMSIVKQTCPKNLSTLNIVSSDDRIKELLFRFRARNYFNTLN 414
Query: 724 YKELKRWKKY--------RISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNAL 773
E +RW +Y RI ++ + N LYN++ E LL ++ KI N L
Sbjct: 415 DVEQQRWLQYCKEVLSIERIEKYMFQLNKLYNLHEKDKEKIVLLHALFDYVCKIANLL 472
>gi|260778470|ref|ZP_05887362.1| exodeoxyribonuclease I [Vibrio coralliilyticus ATCC BAA-450]
gi|260604634|gb|EEX30929.1| exodeoxyribonuclease I [Vibrio coralliilyticus ATCC BAA-450]
Length = 474
Score = 310 bits (794), Expect = 4e-81, Method: Composition-based stats.
Identities = 164/471 (34%), Positives = 268/471 (56%), Gaps = 16/471 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYET+G + +DRP QFA +RTD+ N I P+++YC+P D+LP P A LIT I
Sbjct: 8 TFFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPSDYLPSPEAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G+PE +F + I + P TI++GYN+I FDDE+TR+ +RN I+PY W+
Sbjct: 68 TPQKAASKGLPEPEFITKIHEQLSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++A + L P GI WP G SFKLEHLS N + H+ AHDA++DV A
Sbjct: 128 NGNSRWDLLDVMRACHALRPEGINWPENEEGFISFKLEHLSVANGIEHENAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+ ++ P+LF++ LS+R K+ + + P +++ M + +Y S + P+
Sbjct: 188 TIEMAKKVKAAQPKLFDYFLSMRHKRKLNELVDIVNMTPLMHVSGMLGRECNYTSWVVPV 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L DP+ L D+ ++ + L K + D +PI ++HLN+ PI
Sbjct: 248 AWHPTNQNAVIVVDLAKDPQPLLDLDVEQLNERLYTKHSELGPDELPVPIKLVHLNKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++ D +N++ + + I +K+ Y I + ++D
Sbjct: 308 -LAPAKTLTAENAANIGIDREKCLQNLE---RLRQHPEIREKLNSLYSIEREYEKSDDVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY+ F S + I+R PK LS ++ F + ++ L+F YRAR+F TL E
Sbjct: 364 TMLYDGFFSPAAKQSMDIIRETEPKNLSALDISFSDDRIAPLLFRYRARHFPWTLDESEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLL--KKANEHDTKILNALLMY 776
++W + F ++ I + L +E+L+ +++E IL ++ Y
Sbjct: 424 QKWAAHSREYFESR------IEDYMLNLENLVHEHESDEKKIAILKSVYQY 468
>gi|170691111|ref|ZP_02882277.1| DNA polymerase I [Burkholderia graminis C4D1M]
gi|170144360|gb|EDT12522.1| DNA polymerase I [Burkholderia graminis C4D1M]
Length = 913
Score = 310 bits (794), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 144/270 (53%), Positives = 197/270 (72%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R D P GALYG I MLR++ K A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPDGGPTGALYGMINMLRRMRKEVTAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
YP YKA R MP +L QI IH V+A+GWP+L+I GVEADDVIGTL+ +A K +
Sbjct: 75 DWYPDYKANRPSMPDDLSRQIEPIHVAVRALGWPLLMIDGVEADDVIGTLSTEA-EKRGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLVS+ + LIN N+ DR ++++FGV PE+IVDY SLIGD DN+
Sbjct: 134 NVIVSTGDKDLAQLVSDHVTLINTMTNEKLDRAGVLAKFGVPPERIVDYLSLIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTA+K L QY SL+ I+ +A+ IKG +G NLR AL++LP +K++T++ +CD
Sbjct: 194 PGVEKCGPKTALKWLTQYESLDGIVAHADEIKGAVGDNLRRALDFLPMARKLVTVERNCD 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
LT++I SI E+L +P+ + L +F ++
Sbjct: 254 LTEHIASIEENLQSRPESREELRDVFTRHG 283
>gi|383310254|ref|YP_005363064.1| exonuclease I [Pasteurella multocida subsp. multocida str. HN06]
gi|380871526|gb|AFF23893.1| exonuclease I [Pasteurella multocida subsp. multocida str. HN06]
Length = 475
Score = 310 bits (794), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 164/431 (38%), Positives = 245/431 (56%), Gaps = 15/431 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YDYE+FG++ DRP QFA IRTDI N I +P+M YCK D+LP P A L+T I
Sbjct: 8 SFFIYDYESFGVDPASDRPAQFAGIRTDINFNIISDPVMFYCKQTNDYLPAPEAVLVTGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C GIPE +FA I + F +P T +G+N I +DDE+TR+ F+RN I+PYE WK
Sbjct: 68 TPQECNEKGIPEPEFAERILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWK 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI W Y G PSF+LE L+ N + H AHDA++DV A
Sbjct: 128 NGNSRWDLLDLVRACYALRPEGINWAYDEEGMPSFRLEKLTKANGIEHSNAHDAMADVYA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF + R KK V I P +++ M + + + P+
Sbjct: 188 TIAMAKLIKEKQPKLFQYFFENRGKKEVEKLIDTANLTPLVHVSGMLGNHRGNTTWIVPL 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLNRSP 607
HP N+N +I +L + L D N++R L K E +P+ ++H+N+ P
Sbjct: 248 AWHPTNQNAVICCDLAANITDLLNKDANELRQNLYTPKAELIEKGILPVPLKLVHINKCP 307
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKN---IKCASSILNNTYIWKKIF-LDYKINNSDLE 663
I+ +L N R D +N +K + SI + +IF ++ S
Sbjct: 308 ILAPAKTLLPENAA-RLGIDRTFCLENLQRLKLSPSIRDKV---TEIFNEEWHFAPS--- 360
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
+N++ ELYN F D +AILR + +KL+ F++ ++ +L+F YRAR++ +L+
Sbjct: 361 INVETELYNGFFDYNDKNNMAILRHLPEEKLAEHGLAFKDARIPKLLFHYRARHYFNSLT 420
Query: 724 YKELKRWKKYR 734
E +W+KYR
Sbjct: 421 RAEQIQWQKYR 431
>gi|254248787|ref|ZP_04942107.1| DNA polymerase A [Burkholderia cenocepacia PC184]
gi|124875288|gb|EAY65278.1| DNA polymerase A [Burkholderia cenocepacia PC184]
Length = 920
Score = 310 bits (794), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 141/270 (52%), Positives = 197/270 (72%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK FR+
Sbjct: 18 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEYSACVFDAKGKTFRD 77
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L LQ+ IH V+A+GWP+L+++GVEADDVIGTLA++A +H +
Sbjct: 78 DLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAREA-ERHGM 136
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLV+ ++ L+N N+ DR +I++FGV PE+I+DY +LIGD DN+
Sbjct: 137 NVIVSTGDKDLAQLVTERVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALIGDTVDNV 196
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L QY++L+ +I +A +IKGV+G NLR AL++LP ++++T+ T CD
Sbjct: 197 PGVEKCGPKTAVKWLTQYDTLDGVIEHAADIKGVVGDNLRRALDFLPLGRQLVTVDTSCD 256
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
LT ++ SI SL + LL +F +Y
Sbjct: 257 LTPHLESIEASLKSDGEARDLLRDIFARYG 286
>gi|407715795|ref|YP_006837075.1| exonuclease I [Cycloclasticus sp. P1]
gi|407256131|gb|AFT66572.1| Exonuclease I [Cycloclasticus sp. P1]
Length = 481
Score = 310 bits (794), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 171/486 (35%), Positives = 275/486 (56%), Gaps = 18/486 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+ T+ WYDYET G++ RDR QFA IRTD+ N + NP + YCK D LP P ACLIT
Sbjct: 2 SETYYWYDYETTGIDPARDRVVQFAGIRTDLNFNPVANPDVFYCKLHDDILPHPEACLIT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ + G+ E +F + + F P T VGYN+I FDDE TR + +RN +PY RE
Sbjct: 62 GITPQHAIREGLLESEFIKRVHREFSTPQTCVVGYNSIRFDDEFTRHLLYRNFFDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
WK+ SRWDLI++++ + L P GI WP + +G SFKLE L+ N + H+ AHDALSDV
Sbjct: 122 WKSGNSRWDLIDLVRLTHALRPDGINWPQREDGAASFKLEELTKANGILHEAAHDALSDV 181
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ LA+LI+ PR++++ LSLR KK + +++ + + ++++
Sbjct: 182 YATIELAKLIKQQQPRIYSWGLSLRNKKKAAENLDLIHNTAVIHVSSKYPAAQDCLAVVV 241
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYL---CFKKNSFKEDIPISMIHLNRS 606
PI HP+NKN ++ ++L DP + + +I L + N ++ +P+ +H+N+S
Sbjct: 242 PIAAHPVNKNGVLVFDLSADPTELIDLTAEEIHQRLYTPTAELNEGQKRLPLKTVHINKS 301
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASS---ILNNTYIWKKIFLDYKINNSDLE 663
P+ ++ L L++ + + DL ++C + IL I KK+ + IN +
Sbjct: 302 PM-LAPLSTLTTEVKNKLNIDL------LRCEENRQKIL-GAGIEKKLAEVFSINTFESA 353
Query: 664 LNIDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
+ D LY+ F S D + +R+ KL+ ++ FE+++LEE++F YRARN+ ETL
Sbjct: 354 TDPDLMLYSGGFFSPIDVQNMTQIRACPIDKLAELSLPFEDERLEEMLFRYRARNYPETL 413
Query: 723 SYKELKRWKKYRISRFYNKKNN-LYNINMFYLEIESLLKKAN--EHDTKILNALLMYGKI 779
+ E +W+ YR F + N+ + ++ ++ L+ + + E +L L+ YG+
Sbjct: 414 NEVEKTQWQAYRHDCFIKEHNDGRLTLKAYFERLDELVVEGDWSEEQQVLLEELIDYGEA 473
Query: 780 DGSSCI 785
S +
Sbjct: 474 VADSLV 479
>gi|170701220|ref|ZP_02892190.1| DNA polymerase I [Burkholderia ambifaria IOP40-10]
gi|170133887|gb|EDT02245.1| DNA polymerase I [Burkholderia ambifaria IOP40-10]
Length = 917
Score = 310 bits (793), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 142/270 (52%), Positives = 196/270 (72%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L LQ+ IH V+A+GWP+L++ GVEADDVIGTLA++A +H +
Sbjct: 75 DLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVDGVEADDVIGTLAREA-ERHGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLVS+++ L+N N+ DR +I++FGV PE+I+DY +LIGD DN+
Sbjct: 134 NVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L+QY+SL+ +I +A IKGV+G NLR AL++LP + ++T++T CD
Sbjct: 194 PGVEKCGPKTAVKWLSQYDSLDGVIEHAGEIKGVVGDNLRRALDFLPLGRTLVTVETACD 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L ++ SI SL + LL +F +Y
Sbjct: 254 LAPHLESIEASLKTDGEARDLLRDIFARYG 283
>gi|307726557|ref|YP_003909770.1| DNA polymerase I [Burkholderia sp. CCGE1003]
gi|307587082|gb|ADN60479.1| DNA polymerase I [Burkholderia sp. CCGE1003]
Length = 913
Score = 310 bits (793), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 144/270 (53%), Positives = 196/270 (72%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R D P GALYG I MLR++ K A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPDGGPTGALYGMINMLRRMRKEVTAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
YP YKA R MP +L QI IH V+A+GWP+L+I GVEADDVIGTL+ +A K +
Sbjct: 75 DWYPEYKANRPSMPDDLSRQIEPIHVAVRALGWPLLMIDGVEADDVIGTLSTEA-EKRGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLVS+ + LIN N+ DR ++++FGV PE+IVDY SLIGD DN+
Sbjct: 134 NVIVSTGDKDLAQLVSDHVTLINTMTNEKLDRAGVLAKFGVPPERIVDYLSLIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTA+K L QY SL+ I+ +A IKG +G NLR AL++LP +K++T++ +CD
Sbjct: 194 PGVEKCGPKTALKWLTQYESLDGIVAHAGEIKGAVGDNLRRALDFLPMARKLVTVERNCD 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
LT++I SI E+L +P+ + L +F ++
Sbjct: 254 LTEHITSIEENLQSRPESREELRDVFTRHG 283
>gi|186473237|ref|YP_001860579.1| DNA polymerase I [Burkholderia phymatum STM815]
gi|184195569|gb|ACC73533.1| DNA polymerase I [Burkholderia phymatum STM815]
Length = 915
Score = 310 bits (793), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 140/270 (51%), Positives = 198/270 (73%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R D P GALYG I MLR++ K A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPDGGPTGALYGIINMLRRMRKEVTAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
YP YKA R MP +L QI IH V+++GWP+L+I GVEADDVIGTLAK+A + +
Sbjct: 75 DWYPQYKANRPSMPDDLARQIEPIHVAVRSLGWPLLMIDGVEADDVIGTLAKRAEAR-GM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLV++ + LIN N+ DR ++++FGV PE+IVDY SLIGD DN+
Sbjct: 134 NVIVSTGDKDLAQLVTDHVTLINTMTNEKLDREGVVAKFGVPPERIVDYLSLIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTA+K L Q+ +L+ I+ +A+ IKG +G NLR AL++LP +K++T++TDCD
Sbjct: 194 PGVEKCGPKTAIKWLTQFGTLDGIVAHADEIKGAVGDNLRRALHFLPMARKLVTVETDCD 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
LT+++ S ++L +P+ + L +F ++
Sbjct: 254 LTEHVTSFADTLPTRPESREELRDVFTRHG 283
>gi|375261764|ref|YP_005020934.1| exonuclease I [Klebsiella oxytoca KCTC 1686]
gi|365911242|gb|AEX06695.1| exonuclease I [Klebsiella oxytoca KCTC 1686]
Length = 474
Score = 310 bits (793), Expect = 5e-81, Method: Composition-based stats.
Identities = 162/432 (37%), Positives = 246/432 (56%), Gaps = 13/432 (3%)
Query: 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKIT 372
FL++DYETFG + DRP QFAAIRTD LN + P + YC+ A D+LP P+A ++T IT
Sbjct: 10 FLFHDYETFGTSPSLDRPSQFAAIRTDEDLNIVGEPEVFYCRLADDYLPQPQAVMVTGIT 69
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
PQ G E FA + +F P T VGYN + FDDE+TR + +RN +PY W++
Sbjct: 70 PQEANAKGDNEAAFARRVHDLFTVPKTCIVGYNNVRFDDEVTRNILYRNFYDPYAWSWQH 129
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRAT 492
+ SRWDL++V++A Y L P GI WP G PSF+LEHL+ N + H AHDA++DV AT
Sbjct: 130 DNSRWDLLDVMRACYALRPEGINWPENEEGLPSFRLEHLTVANGIEHSNAHDAMADVYAT 189
Query: 493 LGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPIC 552
+ +A+L++ PRLF+++ + R K+ + I P +P +++ MF + SL+ P+
Sbjct: 190 IAMAKLVKTQQPRLFDYLYAHRNKRKLATLIDVPQIKPLVHVSGMFGAARGNTSLVAPLA 249
Query: 553 IHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIVI 610
HP N+N +I +L D L D + +R+ L K+ + +PI ++HLN+ P V+
Sbjct: 250 WHPDNRNAVIMVDLAGDIAPLLELDADTLRERLYTPKSELGDLPAVPIKLVHLNKCP-VL 308
Query: 611 SNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYK-INNSDLELNI 666
+ L R ++ +N A + N + +K IF + + SD N+
Sbjct: 309 AQQNTLRPQDADRLGINIQRCLEN---AQLLRANPQVREKAVAIFAEAEPFVPSD---NV 362
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
D +LYN F S D + I+ P+ L ++ F +K++E L+F YRARN+ TL E
Sbjct: 363 DTQLYNGFFSDADRAAMKIVLETEPRNLPALDITFADKRIERLLFNYRARNYPGTLDEAE 422
Query: 727 LKRWKKYRISRF 738
+RW ++R F
Sbjct: 423 QQRWLEHRRQVF 434
>gi|107026837|ref|YP_624348.1| DNA polymerase I [Burkholderia cenocepacia AU 1054]
gi|116691969|ref|YP_837502.1| DNA polymerase I [Burkholderia cenocepacia HI2424]
gi|170736037|ref|YP_001777297.1| DNA polymerase I [Burkholderia cenocepacia MC0-3]
gi|105896211|gb|ABF79375.1| DNA polymerase I [Burkholderia cenocepacia AU 1054]
gi|116649969|gb|ABK10609.1| DNA polymerase I [Burkholderia cenocepacia HI2424]
gi|169818225|gb|ACA92807.1| DNA polymerase I [Burkholderia cenocepacia MC0-3]
Length = 917
Score = 310 bits (793), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 141/270 (52%), Positives = 197/270 (72%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L LQ+ IH V+A+GWP+L+++GVEADDVIGTLA++A +H +
Sbjct: 75 DLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAREA-ERHGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLV+ ++ L+N N+ DR +I++FGV PE+I+DY +LIGD DN+
Sbjct: 134 NVIVSTGDKDLAQLVTERVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L QY++L+ +I +A +IKGV+G NLR AL++LP ++++T+ T CD
Sbjct: 194 PGVEKCGPKTAVKWLTQYDTLDGVIEHAADIKGVVGDNLRRALDFLPLGRQLVTVDTSCD 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
LT ++ SI SL + LL +F +Y
Sbjct: 254 LTPHLESIEASLKSDGEARDLLRDIFARYG 283
>gi|261252841|ref|ZP_05945414.1| exodeoxyribonuclease I [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|417952795|ref|ZP_12595846.1| exonuclease I [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|260936232|gb|EEX92221.1| exodeoxyribonuclease I [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|342818402|gb|EGU53268.1| exonuclease I [Vibrio orientalis CIP 102891 = ATCC 33934]
Length = 474
Score = 310 bits (793), Expect = 5e-81, Method: Composition-based stats.
Identities = 165/472 (34%), Positives = 269/472 (56%), Gaps = 18/472 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYET+G + +DRP QFA +RTD+ N I P+++YC+P D+LP P A LIT I
Sbjct: 8 TFFFFDYETWGTSPAKDRPCQFAGVRTDMDFNIIGEPLVIYCQPPADYLPHPEAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+ E +F + I + P TI++GYN+I FDDE+TR+ +RN I+PY W+
Sbjct: 68 TPQTAETQGLSEPEFIAKIHEQLATPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++A Y L P GI WP + G SFKLEHLS N + H+ AHDA++DV A
Sbjct: 128 NGNSRWDLLDVMRACYALRPEGIEWPVNDEGFISFKLEHLSKENGIEHENAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+ ++ P+LF++ LS+R K+ + + P +++ M + +Y S + P+
Sbjct: 188 TIEMAKKVKAAQPKLFDYFLSMRHKRKLNELVDIVNMTPLMHVSGMLGKECNYTSWVVPV 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L DP+ L D+ ++ + L K + D +P+ +IHLN+ PI
Sbjct: 248 AWHPTNQNAVICVDLAKDPQALLDLDVEQLNERLYTKHSELGPDELPVPVKLIHLNKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++ + D N+ + + + + +K+ Y + ++D
Sbjct: 308 -LAPAKTLTAENAEKIGIDREQCLNNL---ALLRQHPEVREKLIGLYSAEREYEKSSDVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY+ F S D + I+R P L+ ++ F +++++ L+F YRARNF TL E
Sbjct: 364 TMLYDGFFSPADKTAMDIIRETDPNNLTALDITFNDQRIDPLLFRYRARNFPWTLDESEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK---ILNALLMY 776
+RW + F ++ I + L +E+L+ + +E D K IL ++ Y
Sbjct: 424 QRWANHCRDYFESR------IEDYMLNLENLVHE-HESDQKKIAILKSIYQY 468
>gi|393775970|ref|ZP_10364267.1| DNA polymerase I [Ralstonia sp. PBA]
gi|392716913|gb|EIZ04490.1| DNA polymerase I [Ralstonia sp. PBA]
Length = 930
Score = 310 bits (793), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 139/270 (51%), Positives = 198/270 (73%), Gaps = 4/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++ALPD+RN + FP GA+YG I MLRKL +Y A Y AC+FDAKGK FR+
Sbjct: 5 VDGSSYLYRAYHALPDLRNPEGFPTGAIYGMINMLRKLRNDYPAQYSACVFDAKGKTFRD 64
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LYP YK R MP +L QI IH+ V+A+GWPIL+++GVEADDVIGTL +A T+ +
Sbjct: 65 DLYPEYKEHRAPMPEDLARQIEPIHEAVRALGWPILMVEGVEADDVIGTLTHRATTQ-GI 123
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
+ ++ST DKD+AQLV+ + L+N + ++ D + ++FGV PE+I+DY +LIGD DN+
Sbjct: 124 RSVVSTGDKDLAQLVNADVTLVNTMSGEVLDPAGVQAKFGVPPERIIDYLALIGDTVDNI 183
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV K+GPKTA+K L +Y +L+NII NA IKGV+G+NLR L+WLPK ++++T+K DCD
Sbjct: 184 PGVPKVGPKTALKWLTEYGTLDNIIANAGAIKGVVGENLRNTLDWLPKGRELITVKLDCD 243
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L+ + +L P++ + L++ F +Y
Sbjct: 244 LSAEVPDF-TALHDHPENAQALIEFFTRYG 272
>gi|375131180|ref|YP_004993280.1| exonuclease I [Vibrio furnissii NCTC 11218]
gi|315180353|gb|ADT87267.1| exonuclease I [Vibrio furnissii NCTC 11218]
Length = 473
Score = 310 bits (793), Expect = 6e-81, Method: Composition-based stats.
Identities = 163/473 (34%), Positives = 265/473 (56%), Gaps = 20/473 (4%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
T+ ++DYET+G + +DRP QFA +RTD+ N I P+++YC+ D+LP P A LIT I
Sbjct: 7 TYFFFDYETWGTSPAKDRPSQFAGVRTDMEFNIIGEPLVIYCQLPSDYLPTPEAALITGI 66
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
PQ + G+PE +F + I P T S+GYN+I FDDE+TR+ +RN ++PY W+
Sbjct: 67 IPQKAMAQGLPEPEFIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWSWQ 126
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++A + L P G+ WP + G SFKLEHLS N + H+ AHDA++DV A
Sbjct: 127 NGNSRWDLLDVMRACHALRPEGVVWPENDEGFTSFKLEHLSKANGIEHENAHDAMADVIA 186
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+ ++ P+LF + S+R K+ + I P +++ M + Y S + PI
Sbjct: 187 TIELAKKVKAAQPKLFEYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQYTSWIVPI 246
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L DP+ L D+ + L + + D +P+ ++HLN+ PI
Sbjct: 247 AWHPTNQNAVIVVDLAKDPQPLLDLDVESLHARLYTRHDDLAPDELPVPVKLVHLNKCPI 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++ D N+ + I + I +K+ + I + ++D
Sbjct: 307 -LAPAKTLTAENAATIGIDRELCLANL---ARIRQSPDIREKLAALFSIEREFEASNDVD 362
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LY+ F S D + I+RS +P+ L ++ F +K++E L+F YRARNF TL +E
Sbjct: 363 TQLYDGFFSPADKAAMEIIRSTNPELLGELDITFSDKRIEPLLFRYRARNFPWTLDDEEQ 422
Query: 728 KRWKKYRISRFYNKKNNLYNINM--FYLEIESLL--KKANEHDTKILNALLMY 776
+RW N + Y ++ + L +E+L+ +++E IL ++ Y
Sbjct: 423 RRWA--------NHCRDYYETHLPDYMLNLENLVHEHESDEKKIAILKSVYQY 467
>gi|339482762|ref|YP_004694548.1| DNA polymerase I [Nitrosomonas sp. Is79A3]
gi|338804907|gb|AEJ01149.1| DNA polymerase I [Nitrosomonas sp. Is79A3]
Length = 915
Score = 309 bits (792), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 146/271 (53%), Positives = 202/271 (74%), Gaps = 7/271 (2%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRAF+ALPD+RN +N P GA++G + MLR+L+K+Y A Y AC+FDAKGK FR+
Sbjct: 7 VDGSSYLYRAFHALPDLRNRNNEPTGAIHGVLNMLRRLHKDYPADYSACVFDAKGKTFRD 66
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LYP+YKA R MP++L +QI +H ++A+GWP+LII GVEADDVIGTLAKQAV + N+
Sbjct: 67 ELYPAYKAHRPAMPHDLAVQIEPLHACIRAMGWPMLIIDGVEADDVIGTLAKQAV-EENM 125
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
+ IIST DKD+AQLV+ I L+N +N++ D +++ +FGV+PE+I+DY LIGD +DN+
Sbjct: 126 QCIISTGDKDIAQLVNANITLVNTMSNEVLDEASVVDKFGVTPERILDYLMLIGDTADNV 185
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV K+GPKTAVK L QY SL+NII +A+ KG IG NLR AL+W ++++TIK D D
Sbjct: 186 PGVHKVGPKTAVKWLTQYGSLDNIIAHADEFKGAIGDNLRKALDWFDTARQLITIKCDVD 245
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYNI 1047
L I L +P+D L+ L+ + ++
Sbjct: 246 LPVRIT----DLAPKPQDTGQLILLYEQLDM 272
>gi|194290334|ref|YP_002006241.1| DNA polymerase I [Cupriavidus taiwanensis LMG 19424]
gi|193224169|emb|CAQ70178.1| DNA polymerase A; 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5'
exonuclease [Cupriavidus taiwanensis LMG 19424]
Length = 939
Score = 309 bits (792), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 136/270 (50%), Positives = 199/270 (73%), Gaps = 4/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++ALPD+RN + P GA+YG I MLRKL +Y A Y AC+FDAKGK FR+
Sbjct: 11 VDGSSYLYRAYHALPDLRNGEGLPTGAIYGMINMLRKLRNDYPAEYSACVFDAKGKTFRD 70
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LYP+YK R MP +L QI IH+ V+A+GWPI+++ GVEADDVIGTL++QA+ + +
Sbjct: 71 DLYPAYKEHRPSMPEDLARQIEPIHEAVRALGWPIVVVDGVEADDVIGTLSRQAM-EQGV 129
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
+ ++ST DKD+AQLV+ + L+N + ++ D ++++FGV PE+I+DY SLIGD DN+
Sbjct: 130 RTVVSTGDKDLAQLVNEHVTLVNTMSGEVLDPPGVLAKFGVPPERIIDYLSLIGDAVDNV 189
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV K+GPKTAVK L ++ SL+ ++ A+ IKGV+G+NLR L WLP ++++T+KTDCD
Sbjct: 190 PGVPKVGPKTAVKWLAEHGSLDGVMAAASGIKGVVGENLRNTLEWLPMARRLVTVKTDCD 249
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L+K++ +L +D++ L+ F +Y
Sbjct: 250 LSKSVADF-HALRETGEDKEQLVAFFQRYG 278
>gi|15602476|ref|NP_245548.1| exonuclease I [Pasteurella multocida subsp. multocida str. Pm70]
gi|12720883|gb|AAK02695.1| SbcB [Pasteurella multocida subsp. multocida str. Pm70]
Length = 475
Score = 309 bits (792), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 162/430 (37%), Positives = 244/430 (56%), Gaps = 13/430 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+F YDYE+FG++ DRP QFA IRTDI N I +P+M YCK D+LP P A L+T I
Sbjct: 8 SFFIYDYESFGVDPASDRPAQFAGIRTDINFNIISDPVMFYCKQTNDYLPAPEAVLVTGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ C GIPE +FA I + F +P T +G+N I +DDE+TR+ F+RN I+PYE WK
Sbjct: 68 TPQECNEKGIPEPEFAERILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWK 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++A Y L P GI W Y G PSF+LE L+ N + H AHDA++DV A
Sbjct: 128 NGNSRWDLLDLVRACYALRPEGINWAYDEEGMPSFRLEKLTKANGIEHSNAHDAMADVYA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+LF + R KK V I P +++ M + + + P+
Sbjct: 188 TIAMAKLIKEKQPKLFQYFFENRGKKEVEKLIDTANLTPLVHVSGMLGNHRGNTTWIVPL 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE----DIPISMIHLNRSP 607
HP N+N +I +L + L D N++R L K E +P+ ++H+N+ P
Sbjct: 248 AWHPTNQNAVICCDLAANITDLLNKDANELRQNLYTPKAELIEKGILPVPLKLVHINKCP 307
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKN---IKCASSILNNTYIWKKIFLDYKINNSDLEL 664
I+ +L N R D +N +K + I + +IF + + + +
Sbjct: 308 ILAPAKTLLPENAA-RLGIDRTFCLENLQRLKLSPPIRDKV---TEIFNEER--HFAPSI 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N++ ELYN F D +AILR + +KL+ F++ ++ +L+F YRAR++ +L+
Sbjct: 362 NVETELYNGFFDYNDKNNMAILRHLPEEKLAEHGLAFKDTRIPKLLFHYRARHYFNSLTR 421
Query: 725 KELKRWKKYR 734
E +W+KYR
Sbjct: 422 AEQIQWQKYR 431
>gi|238024946|ref|YP_002909178.1| DNA polymerase I [Burkholderia glumae BGR1]
gi|237879611|gb|ACR31943.1| DNA polymerase I [Burkholderia glumae BGR1]
Length = 917
Score = 309 bits (792), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 143/270 (52%), Positives = 195/270 (72%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG I MLR++ K RA Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVRAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
L+ YKA R MP +L LQI IH+ V+A+GWP+L+I+GVEADDVIGTLA+ A + +
Sbjct: 75 DLFVDYKANRPSMPPDLALQIEPIHEAVRALGWPLLMIEGVEADDVIGTLARAAEAR-GM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
KV+IST DKD+AQLV++ + L+N N++ DR +I++FGV PE+IVDY SLIGD DN+
Sbjct: 134 KVVISTGDKDLAQLVTSHVTLVNTMTNELLDREGVIAKFGVPPERIVDYLSLIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L QY +L+ I+ +A IKGV+G NLR AL++LP +K++T++T C+
Sbjct: 194 PGVEKCGPKTAVKWLTQYETLDGIVEHAAEIKGVVGDNLRRALDFLPLARKLVTVETACE 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L + SI SL + L+ +F Y
Sbjct: 254 LKPQVESIEASLATGAESRAALLPIFETYG 283
>gi|237747176|ref|ZP_04577656.1| DNA polymerase I [Oxalobacter formigenes HOxBLS]
gi|229378527|gb|EEO28618.1| DNA polymerase I [Oxalobacter formigenes HOxBLS]
Length = 913
Score = 309 bits (791), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 147/279 (52%), Positives = 197/279 (70%), Gaps = 5/279 (1%)
Query: 770 LNALLMYGKIDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIF 829
+N LL+ +DGSS +YRA++ALPD+RN + P GA+YG + ML +L K+Y Y+ACIF
Sbjct: 1 MNRLLLL--VDGSSYLYRAYHALPDLRNAEGEPTGAIYGFLNMLHRLEKDYPTAYVACIF 58
Query: 830 DAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLA 889
DAKGK FRN LY YKA R MP +L Q IH++VK +GWPIL I+G+EADDVIGTL
Sbjct: 59 DAKGKTFRNDLYQEYKANRSAMPDDLARQTGPIHELVKMLGWPILSIEGIEADDVIGTLV 118
Query: 890 KQAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFS 947
A K ++ST DKDM+QLV + + L+N NN+I D ++ +FGV P++IVDY S
Sbjct: 119 SIAKRK-GFDTVVSTGDKDMSQLVRDCVTLVNTMNNEIMDEEGVMRKFGVPPDRIVDYLS 177
Query: 948 LIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK 1007
L+GD SDN+PGV K+GPKTAVK L QY SL+ II NA NIKG +G NLR +L WLP+ ++
Sbjct: 178 LVGDTSDNIPGVNKVGPKTAVKWLTQYGSLDAIIENAVNIKGTVGDNLRESLEWLPQARQ 237
Query: 1008 ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
++TI+TDCDL+ SI E+L+ +D L + + +Y
Sbjct: 238 LITIRTDCDLSGQFKSIEETLVKNSEDVSGLRKAYERYG 276
>gi|402569615|ref|YP_006618959.1| DNA polymerase I [Burkholderia cepacia GG4]
gi|402250812|gb|AFQ51265.1| DNA polymerase I [Burkholderia cepacia GG4]
Length = 917
Score = 309 bits (791), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 141/270 (52%), Positives = 196/270 (72%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L LQ+ IH V+A+GWP+L+++GVEADDVIGTLA++A +H +
Sbjct: 75 DLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAREA-ERHGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLVS+ + L+N N+ DR +I++FGV PE+I+DY +LIGD DN+
Sbjct: 134 NVIVSTGDKDLAQLVSDHVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L+QY+SL+ +I +A IKGV+G NLR AL++LP + ++T++T CD
Sbjct: 194 PGVEKCGPKTAVKWLSQYDSLDGVIEHAGEIKGVVGDNLRRALDFLPLGRTLVTVETACD 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L ++ SI SL + L+ +F +Y
Sbjct: 254 LAPHLESIEASLKTDGEARDLMRDIFARYG 283
>gi|336123958|ref|YP_004566006.1| exodeoxyribonuclease I [Vibrio anguillarum 775]
gi|335341681|gb|AEH32964.1| Exodeoxyribonuclease I [Vibrio anguillarum 775]
Length = 474
Score = 309 bits (791), Expect = 9e-81, Method: Composition-based stats.
Identities = 167/473 (35%), Positives = 266/473 (56%), Gaps = 20/473 (4%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF + DYET+G+N +DRP QFA +RTD+ N I P+++YC+P D+LP P A LIT I
Sbjct: 8 TFFFLDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPADYLPSPEAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G+PE +F + I + P T S+GYN+I FDDE+TR+ +RN I+PY W+
Sbjct: 68 TPQKAVAQGLPEPEFIAKIHQQLATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++A + L P GI WP + G SFKLEHLS N + H AHDA++DV A
Sbjct: 128 NGNSRWDLLDVMRACHALRPEGINWPENDEGFTSFKLEHLSVANGIEHANAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+ ++ P+LF++ ++R K+ + I P +++ M + Y S + PI
Sbjct: 188 TIELAKKVKAAQPKLFDYFFNMRHKRKLNDLIDIVNMTPLMHVSGMLGRECQYTSWIVPI 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L +P+ + ++ L K+ ED +PI ++HLN+ I
Sbjct: 248 AWHPTNQNAVIVVDLAKNPQPLIDLSSEELHQRLYTKREELAEDELPVPIKLVHLNKCAI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKN---IKCASSILNNTYIWKKIFLDYKINNSDLELN 665
++ K L++ D N ++ +K I I +YK +SD +
Sbjct: 308 -LAPAKTLTAENADHIGVDRNLCLEHLALLKQYPEIREKLIGLYTIEREYK--HSD---D 361
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LY+ F S D + I+R P L+ ++ F +K++E L+F YRAR++ TLS +
Sbjct: 362 VDTQLYDGFFSPADKAAMEIIRQADPVNLAALDISFSDKRIEPLLFRYRARHYPLTLSDE 421
Query: 726 ELKRWKKYRISRFYNKKNNLYNINMFYLEIESLL--KKANEHDTKILNALLMY 776
E +RW + F + ++ + L +E+L+ ++E IL ++ Y
Sbjct: 422 EQRRWATHCRDYFES------HLEEYMLNLENLVHTHSSDEKKMAILKSVYRY 468
>gi|415917039|ref|ZP_11554079.1| DNA polymerase I, partial [Herbaspirillum frisingense GSF30]
gi|407761405|gb|EKF70475.1| DNA polymerase I, partial [Herbaspirillum frisingense GSF30]
Length = 263
Score = 309 bits (791), Expect = 9e-81, Method: Composition-based stats.
Identities = 144/254 (56%), Positives = 193/254 (75%), Gaps = 3/254 (1%)
Query: 795 IRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYN 854
+RN + P GALYG I MLR+L +Y A+Y+AC+FDAKGK FR+ LYP YKATRK MP +
Sbjct: 1 MRNAEGAPTGALYGIINMLRRLRNDYPASYVACVFDAKGKTFRDDLYPDYKATRKSMPED 60
Query: 855 LILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVS 914
L LQI IH V+A+GWPIL+++G+EADDVIGTL+ QA T L IIST DKDMAQLV
Sbjct: 61 LALQIEPIHAAVRALGWPILMVEGIEADDVIGTLSVQA-TAAGLDTIISTGDKDMAQLVD 119
Query: 915 NKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLN 972
+ L+N +N++ D + ++FGV P +IVDY SLIGD DN+PGV+K GPKTAVK L
Sbjct: 120 EHVTLVNTMSNEVLDIAGVTAKFGVPPNRIVDYLSLIGDTVDNVPGVEKCGPKTAVKWLT 179
Query: 973 QYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQP 1032
Y+SL+ ++ NA+ I GV+G+NLR AL+WLP+ + ++T+KTDCDL+ ++ SI ESL +QP
Sbjct: 180 SYDSLDGVMANADKISGVVGENLRRALDWLPQGRVLVTVKTDCDLSAHMKSILESLTMQP 239
Query: 1033 KDEKLLMQLFNKYN 1046
+D+++L LF +YN
Sbjct: 240 QDKEVLKDLFTRYN 253
>gi|113868699|ref|YP_727188.1| DNA polymerase I [Ralstonia eutropha H16]
gi|113527475|emb|CAJ93820.1| DNA polymerase I [Ralstonia eutropha H16]
Length = 938
Score = 308 bits (790), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 136/270 (50%), Positives = 199/270 (73%), Gaps = 4/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++ALPD+RN + P GA+YG I MLRKL +Y A Y AC+FDAKGK FR+
Sbjct: 11 VDGSSYLYRAYHALPDLRNGEGLPTGAIYGMINMLRKLRNDYPAEYSACVFDAKGKTFRD 70
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
+YP+YK R MP +L QI IH+ V+A+GWPI+++ GVEADDVIGTL++QA T+ +
Sbjct: 71 DMYPAYKEHRPSMPEDLARQIEPIHEAVRAMGWPIVVVDGVEADDVIGTLSRQA-TEQGV 129
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
+ ++ST DKD+AQLV++++ L+N + ++ D ++++FGV PE+I+DY SLIGD DN+
Sbjct: 130 RTVVSTGDKDLAQLVNDQVTLVNTMSGEVLDPPGVVAKFGVPPERIIDYLSLIGDAVDNV 189
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV K+GPKTAVK L ++ SL+ +I A IKGV+G+NLR L+WLP ++++T+KTDCD
Sbjct: 190 PGVPKVGPKTAVKWLAEHGSLDGVIAAAPGIKGVVGENLRNTLDWLPMARQLVTVKTDCD 249
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L+ + +L +D+ L+ F++Y
Sbjct: 250 LSAAVADF-HALRETGEDKDKLVAFFSRYG 278
>gi|417340866|ref|ZP_12122086.1| Exodeoxyribonuclease 1 [Salmonella enterica subsp. enterica serovar
Baildon str. R6-199]
gi|357958599|gb|EHJ83151.1| Exodeoxyribonuclease 1 [Salmonella enterica subsp. enterica serovar
Baildon str. R6-199]
Length = 487
Score = 308 bits (790), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 167/442 (37%), Positives = 246/442 (55%), Gaps = 24/442 (5%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
STFL++DYETFG + DRP QFAA+RTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 QSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVIGEPEVFYCKPADDYLPQPGAVLIT 68
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G E FA I +F P T VGYN + FDDE+TR +F+RN +PY
Sbjct: 69 GITPQEAREKGENEAAFARRIHALFTVPKTCVVGYNNVRFDDEVTRNIFYRNFYDPYAWS 128
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTRANGIEHSNAHDAMADV 188
Query: 490 RATLGLARLIRNNNP-----------RLFNFILSLRKKKYVLAEIGWPIARPFFYITHMF 538
AT+ +A+L++ P RLF+++ S R K + A I P +P +++ MF
Sbjct: 189 YATIAMAQLVKTRQPRPTGENTPAAARLFDYLYSHRSKHKLAALIDVPQMKPLVHVSGMF 248
Query: 539 SSKHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--I 596
+ S + P+ HP N+N +I +L D L D + +R+ L K + +
Sbjct: 249 GAWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAV 308
Query: 597 PISMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFL 653
P+ ++H+N+ P V++ L R + N+K + N + K IF
Sbjct: 309 PVKLVHINKCP-VLAQANTLRPEDADRLGINRQHCLDNLKV---LRENPQVRDKVVAIFA 364
Query: 654 DYK-INNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFL 712
+ + SD N+D +LY+ F S D + I+ P+ L ++ F +K++E+L+F
Sbjct: 365 EAEPFAASD---NVDAQLYDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFN 421
Query: 713 YRARNFIETLSYKELKRWKKYR 734
YRARNF TL E +RW ++R
Sbjct: 422 YRARNFPGTLDDAEQQRWLEHR 443
>gi|295700821|ref|YP_003608714.1| DNA polymerase I [Burkholderia sp. CCGE1002]
gi|295440034|gb|ADG19203.1| DNA polymerase I [Burkholderia sp. CCGE1002]
Length = 913
Score = 308 bits (790), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 150/297 (50%), Positives = 204/297 (68%), Gaps = 5/297 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R + P GALYG I MLR++ K A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPEGGPTGALYGMINMLRRMRKEVTAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
YP YKA R MP +L QI IH V+A+GWP+L+I VEADDVIGTL +A K +
Sbjct: 75 DWYPEYKANRPSMPEDLARQIEPIHVAVRALGWPLLMIDRVEADDVIGTLCTEA-EKLGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
V++ST DKD+AQLVSN++ L+N N+ DR ++++FGV PE+I+DY SLIGD DN+
Sbjct: 134 NVVVSTGDKDLAQLVSNRVTLVNTMTNETLDRDGVVAKFGVPPERIIDYLSLIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L QY SL+ I+ +A+ IKG +G NLR AL++LP +K++T++ CD
Sbjct: 194 PGVEKCGPKTAVKWLMQYESLDGIVEHASEIKGAVGDNLRRALDFLPMARKLVTVERHCD 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYNIPLKNHDDNISD--ENYDIDCSDAKSL 1071
LT +IVSI ESL P+ + L LF ++ + I+D E + D A S+
Sbjct: 254 LTGHIVSIEESLPSLPESREELRDLFTRHGFKTWLREVEIADAVEGPETDVPPALSV 310
>gi|209517786|ref|ZP_03266621.1| DNA polymerase I [Burkholderia sp. H160]
gi|209501732|gb|EEA01753.1| DNA polymerase I [Burkholderia sp. H160]
Length = 913
Score = 308 bits (790), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 139/270 (51%), Positives = 198/270 (73%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R + P GALYG I MLR++ K A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPEGGPTGALYGMINMLRRMRKEVTAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
YP YKA R MP +L QI IH V+A+GWP+L+I+ VEADDVIGTL +A K +
Sbjct: 75 DWYPEYKANRPSMPEDLARQIEPIHVAVRALGWPLLMIERVEADDVIGTLCTEA-EKLGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
V++ST DKD+AQLVS+++ L+N N+ DR ++++FGV PE+I+DY SL+GD DN+
Sbjct: 134 NVVVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVVAKFGVPPERIIDYLSLVGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L QY+SL+ I+ +A+ IKG +G+NLR AL+++P +K++T++ CD
Sbjct: 194 PGVEKCGPKTAVKWLTQYDSLDGIVEHASEIKGAVGENLRRALDFMPMARKLVTVERHCD 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L +++VSI ESL +P+ + L LF ++
Sbjct: 254 LNEHLVSIEESLSSRPESREELRDLFTRHG 283
>gi|323529237|ref|YP_004231389.1| DNA polymerase I [Burkholderia sp. CCGE1001]
gi|323386239|gb|ADX58329.1| DNA polymerase I [Burkholderia sp. CCGE1001]
Length = 913
Score = 308 bits (790), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 144/270 (53%), Positives = 194/270 (71%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R D P GALYG I MLR++ K A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPDGGPTGALYGMINMLRRMRKEVTAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
YP YKA R MP +L QI IH V+A+GWP+L+I GVEADDVIGTL+ +A K +
Sbjct: 75 DWYPDYKANRPSMPDDLSRQIEPIHVAVRALGWPLLMIDGVEADDVIGTLSTEA-EKRGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLVS+ + LIN N+ DR ++++FGV PE+IVDY SLIGD DN+
Sbjct: 134 NVIVSTGDKDLAQLVSDHVTLINTMTNEKLDRAGVLAKFGVPPERIVDYLSLIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTA+K L QY SL+ I+ +A IKG +G NLR AL++LP +K++T++ CD
Sbjct: 194 PGVEKCGPKTALKWLTQYESLDGIVAHAGEIKGAVGDNLRRALDFLPMARKLVTVERHCD 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
LT +I SI E+L +P+ + L +F ++
Sbjct: 254 LTDHIASIEENLQSRPESREELRDVFTRHG 283
>gi|78063065|ref|YP_372973.1| DNA polymerase I [Burkholderia sp. 383]
gi|77970950|gb|ABB12329.1| DNA polymerase A [Burkholderia sp. 383]
Length = 917
Score = 308 bits (790), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 140/270 (51%), Positives = 197/270 (72%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L LQ+ IH V+A+GWP+L+++GVEADDVIGTLA++A +H +
Sbjct: 75 DLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAREA-ERHGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
V++ST DKD+AQLV++ + L+N N+ DR +I++FGV PE+I+DY +LIGD DN+
Sbjct: 134 NVVVSTGDKDLAQLVTDHVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L QY+SL+ +I +A +IKGV+G NLR AL++LP + ++T++T CD
Sbjct: 194 PGVEKCGPKTAVKWLAQYDSLDGVIEHAGDIKGVVGDNLRRALDFLPLGRTLVTVETACD 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
LT ++ SI SL + L+ +F +Y
Sbjct: 254 LTPHLESIEASLKSDGEARDLMRDIFARYG 283
>gi|119505890|ref|ZP_01627954.1| Exonuclease [marine gamma proteobacterium HTCC2080]
gi|119458271|gb|EAW39382.1| Exonuclease [marine gamma proteobacterium HTCC2080]
Length = 483
Score = 308 bits (790), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 157/434 (36%), Positives = 241/434 (55%), Gaps = 13/434 (2%)
Query: 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
+ + +F W+DYET G NV DRP QFA +RTD N I P++ YC+P+PD L P A
Sbjct: 2 SSSESFYWHDYETSGANVFEDRPLQFAGVRTDKNFNVISEPLVHYCRPSPDCLLHPAAIR 61
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
+T I+P L G E F + I++ F+ PGT ++GYN++ FDDEITRF +RN PY
Sbjct: 62 VTGISPYKALAEGANEGAFMAKIQREFMVPGTCALGYNSVRFDDEITRFALYRNFFPPYA 121
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
RE+ N SRWDLI+V +A Y L P GI WP + +G PSF+LE L+ N + H AHDAL+
Sbjct: 122 REFGQNRSRWDLIDVARAIYALRPDGIVWPIREDGLPSFRLEDLTAANGIDHGNAHDALA 181
Query: 488 DVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISL 547
DV AT+ LA+L+ P LF+ + + R K+ + + +P +++ F ++ +++
Sbjct: 182 DVLATIALAKLLSKAQPTLFDTLYAQRGKQAIAPLLNCLDPKPVIHVSGQFGAQRDNLAI 241
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLN 604
+ P+ +HP NKN +I +L P FL +R L K F + P+ MI +N
Sbjct: 242 VLPLAVHPTNKNGVICADLGEAP-AFLDQSSEDVRQLLFTPKADFPAGVQRPPLKMIQIN 300
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLN---CAFKNIKCASSILNN--TYIWKKIFLDYKINN 659
R+P+V+ V S R + D + + + A + T ++I+ D
Sbjct: 301 RAPVVLPTTWV-SGEPAQRLRLDGDQTRASLAAYRVARQVDPKGFTRFIEEIYADRAFAP 359
Query: 660 SDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFI 719
+ D +LY F+ + D L +R +P L++ + FE+++L E+ F YRARNF
Sbjct: 360 RS---DPDTQLYEGFLGRHDEALLETIRQATPDSLASHTWTFEDRRLPEVFFRYRARNFP 416
Query: 720 ETLSYKELKRWKKY 733
E+L E RW+++
Sbjct: 417 ESLDPDEKARWREH 430
>gi|260768651|ref|ZP_05877585.1| exodeoxyribonuclease I [Vibrio furnissii CIP 102972]
gi|260616681|gb|EEX41866.1| exodeoxyribonuclease I [Vibrio furnissii CIP 102972]
Length = 473
Score = 308 bits (789), Expect = 1e-80, Method: Composition-based stats.
Identities = 162/473 (34%), Positives = 265/473 (56%), Gaps = 20/473 (4%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
T+ ++DYET+G + +DRP QFA +RTD+ N I P+++YC+ D+LP P A LIT I
Sbjct: 7 TYFFFDYETWGTSPAKDRPSQFAGVRTDMEFNIIGEPLVIYCQLPSDYLPAPEAALITGI 66
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
PQ + G+PE +F + I P T S+GYN+I FDDE+TR+ +RN ++PY W+
Sbjct: 67 IPQKAMAQGLPEPEFIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWSWQ 126
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++A + L P G+ WP + G SFKLEHLS N + H+ AHDA++DV A
Sbjct: 127 NGNSRWDLLDVMRACHALRPEGVVWPENDEGFTSFKLEHLSKANGIEHENAHDAMADVIA 186
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+ ++ P+LF + S+R K+ + I P +++ M + Y S + PI
Sbjct: 187 TIELAKKVKAAQPKLFEYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQYTSWIVPI 246
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L DP+ L D+ + L + + D +P+ ++HLN+ PI
Sbjct: 247 AWHPTNQNAVIVVDLAKDPQPLLDLDVESLHARLYTRHDDLAPDELPVPVKLVHLNKCPI 306
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++ D N+ + I + I +K+ + I + ++D
Sbjct: 307 -LAPAKTLTAENAATIGIDRELCLANL---ARIRQSPDIREKLAALFSIEREFEASNDVD 362
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LY+ F S D + I+RS +P+ L ++ F +K+++ L+F YRARNF TL +E
Sbjct: 363 TQLYDGFFSPADKAAMEIIRSTNPELLGELDITFSDKRIDPLLFRYRARNFPWTLDDEEQ 422
Query: 728 KRWKKYRISRFYNKKNNLYNINM--FYLEIESLL--KKANEHDTKILNALLMY 776
+RW N + Y ++ + L +E+L+ +++E IL ++ Y
Sbjct: 423 RRWA--------NHCRDYYETHLPDYMLNLENLVHEHESDEKKIAILKSVYQY 467
>gi|390577026|ref|ZP_10257066.1| DNA polymerase I [Burkholderia terrae BS001]
gi|389931004|gb|EIM93092.1| DNA polymerase I [Burkholderia terrae BS001]
Length = 913
Score = 308 bits (789), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 142/268 (52%), Positives = 195/268 (72%), Gaps = 3/268 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R D P GALYG I MLR++ K A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPDGAPTGALYGIINMLRRMRKEVTAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
YP YKA R MP +L QI IH V+++GWP+L+I+GVEADDVIGTLAK+A + +
Sbjct: 75 DWYPQYKANRASMPDDLSKQIEPIHVAVRSLGWPLLMIEGVEADDVIGTLAKRAEAR-GM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLV++ + LIN N+ DR ++ +FGV PE+IVDY SLIGD DN+
Sbjct: 134 NVIVSTGDKDLAQLVTDHVTLINTMTNEKLDREGVVGKFGVPPERIVDYLSLIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTA+K L Q+ +L+ I+ +A+ IKG +G NLR AL++LP +K++T+ TDCD
Sbjct: 194 PGVEKCGPKTAIKWLTQFETLDGIVAHADEIKGAVGDNLRRALDFLPMARKLVTVDTDCD 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNK 1044
LT+ I S E+L +P+ + L +F +
Sbjct: 254 LTEQINSFEETLATRPESREELRDVFTR 281
>gi|330821221|ref|YP_004350083.1| DNA polymerase I [Burkholderia gladioli BSR3]
gi|327373216|gb|AEA64571.1| DNA polymerase I [Burkholderia gladioli BSR3]
Length = 919
Score = 308 bits (789), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 142/270 (52%), Positives = 194/270 (71%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVTAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
L+ YKA R MP +L LQI IHQ V+A+GWP+L+I+GVEADDVIGTLA A +
Sbjct: 75 DLFADYKANRPSMPTDLALQIEPIHQAVRALGWPLLMIEGVEADDVIGTLA-HAAEARGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
KV+IST DKD+AQLV+ ++ L+N +N++ DR +I++FGV PE+IVDY SLIGD DN+
Sbjct: 134 KVVISTGDKDLAQLVTERVTLVNTMSNELLDREGVIAKFGVPPERIVDYLSLIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L QY +L+ ++ +A IKGV+G NLR AL++LP +K++T++T C+
Sbjct: 194 PGVEKCGPKTAVKWLTQYETLDGVVEHAAEIKGVVGDNLRRALDFLPLARKLVTVETACE 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L + SI SL + + L+ +F Y
Sbjct: 254 LKPQVESIEASLATLGESREALLPIFENYG 283
>gi|421477008|ref|ZP_15924861.1| DNA-directed DNA polymerase [Burkholderia multivorans CF2]
gi|400227323|gb|EJO57330.1| DNA-directed DNA polymerase [Burkholderia multivorans CF2]
Length = 920
Score = 308 bits (789), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 142/270 (52%), Positives = 196/270 (72%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK FR+
Sbjct: 18 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEYSACVFDAKGKTFRD 77
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L LQ+ IH V+A+GWP+L+++GVEADDVIGTLA++A + +
Sbjct: 78 DLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAREA-ERRGM 136
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLVS+++ L+N N+ DR ++++FGV PE+IVDY +LIGD DN+
Sbjct: 137 NVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVLAKFGVPPERIVDYLALIGDTVDNV 196
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L+QY SL+ +I +A IKGV+G NLR AL++LP +K++T++T CD
Sbjct: 197 PGVEKCGPKTAVKWLSQYGSLDGVIEHAGEIKGVVGDNLRRALDFLPLGRKLVTVETACD 256
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L ++ SI SL + LL +F +Y
Sbjct: 257 LAPHLESIDASLKSDGEARDLLRDIFARYG 286
>gi|161521363|ref|YP_001584790.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
gi|189352470|ref|YP_001948097.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
gi|160345413|gb|ABX18498.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
gi|189336492|dbj|BAG45561.1| DNA polymerase I [Burkholderia multivorans ATCC 17616]
Length = 917
Score = 308 bits (788), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 142/270 (52%), Positives = 195/270 (72%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L LQ+ IH V+A+GWP+L+++GVEADDVIGTLA++A + +
Sbjct: 75 DLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAREA-ERRGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLVS+++ L+N N+ DR ++++FGV PE+IVDY +LIGD DN+
Sbjct: 134 NVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVLAKFGVPPERIVDYLALIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L QY SL+ +I +A IKGV+G NLR AL++LP +K++T++T CD
Sbjct: 194 PGVEKCGPKTAVKWLTQYGSLDGVIEHAGEIKGVVGDNLRRALDFLPLGRKLVTVETACD 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L ++ SI SL + LL +F +Y
Sbjct: 254 LAPHLESIDASLKSDGEARDLLRDIFARYG 283
>gi|221212339|ref|ZP_03585316.1| DNA polymerase I [Burkholderia multivorans CGD1]
gi|221167438|gb|EED99907.1| DNA polymerase I [Burkholderia multivorans CGD1]
Length = 920
Score = 308 bits (788), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 142/270 (52%), Positives = 195/270 (72%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK FR+
Sbjct: 18 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEYSACVFDAKGKTFRD 77
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L LQ+ IH V+A+GWP+L+++GVEADDVIGTLA++A + +
Sbjct: 78 ELYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAREA-ERRGM 136
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLVS+++ L+N N+ DR ++++FGV PE+IVDY +LIGD DN+
Sbjct: 137 NVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVLAKFGVPPERIVDYLALIGDTVDNV 196
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L QY SL+ +I +A IKGV+G NLR AL++LP +K++T++T CD
Sbjct: 197 PGVEKCGPKTAVKWLTQYGSLDGVIEHAGEIKGVVGDNLRRALDFLPLGRKLVTVETACD 256
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L ++ SI SL + LL +F +Y
Sbjct: 257 LAPHLESIDASLKSDGEARDLLRDIFARYG 286
>gi|420247667|ref|ZP_14751062.1| DNA polymerase I [Burkholderia sp. BT03]
gi|398070561|gb|EJL61855.1| DNA polymerase I [Burkholderia sp. BT03]
Length = 913
Score = 308 bits (788), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 142/268 (52%), Positives = 195/268 (72%), Gaps = 3/268 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R D P GALYG I MLR++ K A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPDGAPTGALYGIINMLRRMRKEVTAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
YP YKA R MP +L QI IH V+++GWP+L+I+GVEADDVIGTLAK+A + +
Sbjct: 75 DWYPEYKANRASMPDDLSKQIEPIHVAVRSLGWPLLMIEGVEADDVIGTLAKRAEAR-GM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLV++ + LIN N+ DR ++ +FGV PE+IVDY SLIGD DN+
Sbjct: 134 NVIVSTGDKDLAQLVTDHVTLINTMTNEKLDREGVVGKFGVPPERIVDYLSLIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTA+K L Q+ +L+ I+ +A+ IKG +G NLR AL++LP +K++T+ TDCD
Sbjct: 194 PGVEKCGPKTAIKWLTQFETLDGIVAHADEIKGAVGDNLRRALDFLPMARKLVTVDTDCD 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNK 1044
LT+ I S E+L +P+ + L +F +
Sbjct: 254 LTEQINSFEETLATRPESREELRDVFTR 281
>gi|421468295|ref|ZP_15916847.1| DNA-directed DNA polymerase [Burkholderia multivorans ATCC BAA-247]
gi|400232150|gb|EJO61786.1| DNA-directed DNA polymerase [Burkholderia multivorans ATCC BAA-247]
Length = 920
Score = 308 bits (788), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 142/270 (52%), Positives = 195/270 (72%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK FR+
Sbjct: 18 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEYSACVFDAKGKTFRD 77
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L LQ+ IH V+A+GWP+L+++GVEADDVIGTLA++A + +
Sbjct: 78 DLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAREA-ERRGM 136
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLVS+++ L+N N+ DR ++++FGV PE+IVDY +LIGD DN+
Sbjct: 137 NVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVLAKFGVPPERIVDYLALIGDTVDNV 196
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L QY SL+ +I +A IKGV+G NLR AL++LP +K++T++T CD
Sbjct: 197 PGVEKCGPKTAVKWLTQYGSLDGVIEHAGEIKGVVGDNLRRALDFLPLGRKLVTVETACD 256
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L ++ SI SL + LL +F +Y
Sbjct: 257 LAPHLESIDASLKSDGEARDLLRDIFARYG 286
>gi|221197067|ref|ZP_03570114.1| DNA polymerase I [Burkholderia multivorans CGD2M]
gi|221203739|ref|ZP_03576757.1| DNA polymerase I [Burkholderia multivorans CGD2]
gi|221175905|gb|EEE08334.1| DNA polymerase I [Burkholderia multivorans CGD2]
gi|221183621|gb|EEE16021.1| DNA polymerase I [Burkholderia multivorans CGD2M]
Length = 920
Score = 307 bits (787), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 142/270 (52%), Positives = 195/270 (72%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK FR+
Sbjct: 18 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEYSACVFDAKGKTFRD 77
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L LQ+ IH V+A+GWP+L+++GVEADDVIGTLA++A + +
Sbjct: 78 DLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAREA-ERRGM 136
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLVS+++ L+N N+ DR ++++FGV PE+IVDY +LIGD DN+
Sbjct: 137 NVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVLAKFGVPPERIVDYLALIGDTVDNV 196
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L QY SL+ +I +A IKGV+G NLR AL++LP +K++T++T CD
Sbjct: 197 PGVEKCGPKTAVKWLTQYGSLDGVIEHAGEIKGVVGDNLRRALDFLPLGRKLVTVETACD 256
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L ++ SI SL + LL +F +Y
Sbjct: 257 LAPHLESIDASLKSDGEARDLLRDIFARYG 286
>gi|262402419|ref|ZP_06078980.1| exodeoxyribonuclease I [Vibrio sp. RC586]
gi|262351201|gb|EEZ00334.1| exodeoxyribonuclease I [Vibrio sp. RC586]
Length = 474
Score = 307 bits (787), Expect = 2e-80, Method: Composition-based stats.
Identities = 167/471 (35%), Positives = 264/471 (56%), Gaps = 16/471 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYET+G+N +DRP QFA +RTD+ N I P+++YC+ D+LP P A LIT I
Sbjct: 8 TFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G+PE +F + I P T S+GYN+I FDDE+TR+ +RN I+PY W+
Sbjct: 68 TPQKANSLGLPEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
+ SRWDL++VI+A Y L P GI WP + G SFKLEHLS N + H AHDA++DV A
Sbjct: 128 HGNSRWDLLDVIRACYALRPEGIEWPENDEGFTSFKLEHLSVANGIEHSNAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+ I+ P+LF++ ++R K+ + I P +++ M + Y S + PI
Sbjct: 188 TIELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVPI 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L DP+ L D + ++ L + D +P+ ++HLN+ PI
Sbjct: 248 AWHPTNQNAVIMVDLGKDPQPLLDLDADALQARLYTRYEDLAPDELPVPVKLVHLNKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++ + D ++ I + I +K+ + E N+D
Sbjct: 308 -LAPAKTLTAENAEKIGIDREQCLAHLNV---IRQHPEIREKLVTVFSQEREFAKENNVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LY F S D + I+R+ SP L ++ +K++E L+F YRAR++ TL+ E
Sbjct: 364 SQLYEGFFSPADRAAMEIIRTTSPDNLGSLEIKVADKRIEPLLFRYRARHYPHTLTDAEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLL--KKANEHDTKILNALLMY 776
+RW + R Y ++ N+ + L +E+L+ + +E IL ++ Y
Sbjct: 424 RRWAAH--CRDYFER----NLESYMLNLENLVHEHQTDEKKMAILKSVYHY 468
>gi|163801030|ref|ZP_02194930.1| exodeoxyribonuclease I [Vibrio sp. AND4]
gi|159175379|gb|EDP60176.1| exodeoxyribonuclease I [Vibrio sp. AND4]
Length = 473
Score = 307 bits (787), Expect = 3e-80, Method: Composition-based stats.
Identities = 163/471 (34%), Positives = 265/471 (56%), Gaps = 20/471 (4%)
Query: 306 LHNGNS-TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPR 364
+H N TF ++DYET+G N +DRP QFA +RTD N I P+++YC+P D+LP P
Sbjct: 1 MHPDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPE 60
Query: 365 ACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLIN 424
A LIT ITPQ + G+ E +F + I KP T S+GYN+I FDDE+TR+ +RN I+
Sbjct: 61 AALITGITPQKAMQEGLSEPEFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFID 120
Query: 425 PYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHD 484
PY W+N SRWDL++V++A + L P G+ WP + G SFKLEHLS N + H AHD
Sbjct: 121 PYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFTSFKLEHLSVANGIEHSNAHD 180
Query: 485 ALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSY 544
A++DV AT+ +A+ ++ P+LF++ S+R K+ + + P +++ M + Y
Sbjct: 181 AMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY 240
Query: 545 ISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIH 602
S + P+ HP N N +IT +L DP+ L K+++ L K+ + IP+ +IH
Sbjct: 241 TSWIVPVAWHPTNNNAVITIDLAKDPQPLLELSAEKLQERLYTKREELGDLLPIPVKLIH 300
Query: 603 LNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF----LDYKIN 658
LN+ PI ++ K L++ D N+ + + + I +K+ ++ +
Sbjct: 301 LNKCPI-LAPAKTLTAENAEIIGIDRQKCLNNL---ALLRQHPEIREKLIGLFSIEREFQ 356
Query: 659 NSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNF 718
SD ++D +LY F S D + I+R L+ ++ F++K+++ L+F YRAR++
Sbjct: 357 KSD---DVDTQLYEGFFSPADRAAMDIIRETDAHNLAALDIEFDDKRIKPLLFRYRARHY 413
Query: 719 IETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI 769
TL +E +RW+++ F + I + L +E+L+ + + KI
Sbjct: 414 AGTLDEQEQRRWEQHCREVFEGQ------IEEYMLNLENLVHEHESDEKKI 458
>gi|319787286|ref|YP_004146761.1| exodeoxyribonuclease I [Pseudoxanthomonas suwonensis 11-1]
gi|317465798|gb|ADV27530.1| Exodeoxyribonuclease I [Pseudoxanthomonas suwonensis 11-1]
Length = 480
Score = 307 bits (787), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 164/477 (34%), Positives = 255/477 (53%), Gaps = 12/477 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+FL+YD ETFG + RR R QFAA+RTD L +D PI L+ +PA D LP P A LIT
Sbjct: 2 TDSFLFYDLETFGADPRRSRIAQFAAVRTDRELQVVDEPISLFVRPADDLLPSPVATLIT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
I PQ L G+ E + + I + +PGT ++GYN++ FDDE R +RN +PYERE
Sbjct: 62 GIAPQHALREGLSEAEATARIVEEMSRPGTCTLGYNSLRFDDEYVRHTLFRNFFDPYERE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWDL++V++ + L P GI WP + +G SFKLEHL+ NN+ AH+ALSDV
Sbjct: 122 WRGGNSRWDLLDVMRLAHALRPEGIEWPKREDGATSFKLEHLALANNVREGDAHEALSDV 181
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+GLARL+R PRL+++ L +R+K++ + + P +++ + + + +
Sbjct: 182 YATIGLARLLRQAQPRLWDYALRMREKRHAASLLDTFAMNPVLHVSQRYPAARMCAAAVL 241
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ +HP N +I ++L D L +I D L +P+ +HLNRS
Sbjct: 242 PLAVHPDISNRVIVFDLDGDVDALLEQAPEEIADRLYTPVADLPPGVSRVPLKEVHLNRS 301
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL-ELN 665
P+++ + + + R D A ++ + + + +K Y + E +
Sbjct: 302 PMLVPWGHLRAPDFQ-RLGIDPELALARVERLRA--HGPELAEKARQVYARGARERGEED 358
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D LY+ F D +R+ +P L + F F + +L EL+F YRARN+ ETL+
Sbjct: 359 VDGALYSGFCGDGDRRLCVQVRATAPADLGSRAFEFRDPRLPELLFRYRARNWPETLTPD 418
Query: 726 ELKRWKKYRISRFYNKKN-NLYNINMFYLEIESLLKKANEHDTK---ILNALLMYGK 778
E RW YR R + Y F+ EI + L+ + D + +L+ L +G+
Sbjct: 419 ERGRWDDYRRRRLLADSGLSEYTFETFFAEI-ATLRATHAGDGQRLVLLDQLEAWGR 474
>gi|167573600|ref|ZP_02366474.1| DNA polymerase I [Burkholderia oklahomensis C6786]
Length = 923
Score = 307 bits (786), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 143/270 (52%), Positives = 194/270 (71%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG I MLR++ K+ A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKDVSAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAK+A + +
Sbjct: 75 DLYAEYKAHRPPMPPDLALQIEPIHAAVRALGWPLLMIEGVEADDVIGTLAKEA-ERRGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
KVI+ST DKD+AQLV+ + LIN N+ DR ++++FGV PE IVDY SLIGD DN+
Sbjct: 134 KVIVSTGDKDLAQLVTGHVTLINTMTNEALDRDGVLAKFGVPPELIVDYLSLIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L+QY +L+ ++ +A IKGV+G NLR AL++LP +K++T++T C+
Sbjct: 194 PGVEKCGPKTAVKWLSQYGTLDGVVEHAGEIKGVVGDNLRRALDFLPLARKLVTVETACE 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L ++ SI SL + L +F+ Y
Sbjct: 254 LAPHVESIESSLATDGEGRDALRDIFSTYG 283
>gi|167566520|ref|ZP_02359436.1| DNA polymerase I [Burkholderia oklahomensis EO147]
Length = 923
Score = 307 bits (786), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 143/270 (52%), Positives = 194/270 (71%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG I MLR++ K+ A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKDVSAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L LQI IH V+A+GWP+L+I+GVEADDVIGTLAK+A + +
Sbjct: 75 DLYAEYKAHRPPMPPDLALQIEPIHAAVRALGWPLLMIEGVEADDVIGTLAKEA-ERRGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
KVI+ST DKD+AQLV+ + LIN N+ DR ++++FGV PE IVDY SLIGD DN+
Sbjct: 134 KVIVSTGDKDLAQLVTGHVTLINTMTNEALDRDGVLAKFGVPPELIVDYLSLIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L+QY +L+ ++ +A IKGV+G NLR AL++LP +K++T++T C+
Sbjct: 194 PGVEKCGPKTAVKWLSQYGTLDGVVEHAGEIKGVVGDNLRRALDFLPLARKLVTVETACE 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L ++ SI SL + L +F+ Y
Sbjct: 254 LAPHVESIESSLATDGEGRDALRDIFSTYG 283
>gi|339326741|ref|YP_004686434.1| DNA polymerase I [Cupriavidus necator N-1]
gi|338166898|gb|AEI77953.1| DNA polymerase I [Cupriavidus necator N-1]
Length = 938
Score = 307 bits (786), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 135/270 (50%), Positives = 199/270 (73%), Gaps = 4/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++ALPD+RN + P GA+YG I MLRKL +Y A Y AC+FDAKGK FR+
Sbjct: 11 VDGSSYLYRAYHALPDLRNGEGLPTGAIYGMINMLRKLRNDYPAEYSACVFDAKGKTFRD 70
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
+YP+YK R MP +L QI IH+ V+A+GWPI+++ GVEADDVIGTL++QA T+ +
Sbjct: 71 DMYPAYKEHRPSMPEDLARQIEPIHEAVRAMGWPIVVVDGVEADDVIGTLSRQA-TEQGV 129
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
+ ++ST DKD+AQLV++++ L+N + ++ D ++++FGV PE+I+DY SLIGD DN+
Sbjct: 130 RTVVSTGDKDLAQLVNDQVTLVNTMSGEVLDPPGVVAKFGVPPERIIDYLSLIGDAVDNV 189
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV K+GPKTAVK L ++ SL+ ++ A IKGV+G+NLR L+WLP ++++T+KTDCD
Sbjct: 190 PGVPKVGPKTAVKWLAEHGSLDGVMAAAPGIKGVVGENLRNTLDWLPMARQLVTVKTDCD 249
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L+ + +L +D+ L+ F++Y
Sbjct: 250 LSAAVADF-HALREIGEDKDKLVAFFSRYG 278
>gi|134292957|ref|YP_001116693.1| DNA polymerase I [Burkholderia vietnamiensis G4]
gi|134136114|gb|ABO57228.1| DNA polymerase I [Burkholderia vietnamiensis G4]
Length = 917
Score = 306 bits (785), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 141/270 (52%), Positives = 195/270 (72%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L LQ+ IH V+A+GWP+L+++GVEADDVIGTLA++A + +
Sbjct: 75 DLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAREA-EQRGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLV+ ++ L+N N+ DR +I++FGV PE+I+DY +LIGD DN+
Sbjct: 134 NVIVSTGDKDLAQLVTERVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L+QY+SL+ +I +A IKGV+G NLR AL++LP +K++T+ T CD
Sbjct: 194 PGVEKCGPKTAVKWLSQYDSLDGVIEHAGEIKGVVGDNLRRALDFLPLGRKLVTVDTACD 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L ++ SI SL + LL +F +Y
Sbjct: 254 LAPHLESIEASLKTDGEARDLLRDIFARYG 283
>gi|229515610|ref|ZP_04405069.1| exodeoxyribonuclease I [Vibrio cholerae TMA 21]
gi|229347379|gb|EEO12339.1| exodeoxyribonuclease I [Vibrio cholerae TMA 21]
Length = 478
Score = 306 bits (785), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 162/479 (33%), Positives = 267/479 (55%), Gaps = 14/479 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
TF ++DYET+G+N +DRP QFA +RTD+ N I P+++YC+ D+LP P A LIT
Sbjct: 10 QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 69
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ + G+ E +F + I P TIS+GYN+I FDDE+TR+ +RN I+PY
Sbjct: 70 GITPQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWS 129
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W++ SRWDL++V++A + L P GI WP ++G SFKLEHLS N + H AHDA++DV
Sbjct: 130 WQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADV 189
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ LA+ ++ P+LF++ ++R K+ + I P +++ M + Y S +
Sbjct: 190 IATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIV 249
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
PI HP N+N +I +L DP+ L D ++ L + D +P+ ++HLN+
Sbjct: 250 PIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKC 309
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELN 665
PI ++ K L+S + D ++ I + I +K+ + + E +
Sbjct: 310 PI-LAPAKTLTSENAQKIGIDREQCLAHLNV---IRQHPEIREKLVTVFSQEREFNQESD 365
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LY F S D + I+R+ +P+ L ++ +K++E L+F YRAR++ TL+
Sbjct: 366 VDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDA 425
Query: 726 ELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGKIDGSSC 784
E +RW + R Y ++ N+ + L +E+L+ + K+ +Y ++ +C
Sbjct: 426 EQRRWAAH--CRDYFER----NLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC 478
>gi|424045521|ref|ZP_17783086.1| exodeoxyribonuclease I [Vibrio cholerae HENC-03]
gi|408886571|gb|EKM25245.1| exodeoxyribonuclease I [Vibrio cholerae HENC-03]
Length = 473
Score = 306 bits (784), Expect = 5e-80, Method: Composition-based stats.
Identities = 160/471 (33%), Positives = 266/471 (56%), Gaps = 20/471 (4%)
Query: 306 LHNGNS-TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPR 364
+H N TF ++DYET+G + +DRP QFA +RTD N I P+++YC+P D+LP P
Sbjct: 1 MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPE 60
Query: 365 ACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLIN 424
A LIT ITPQ + G+PE +F + I K T S+GYN+I FDDE+TR+ +RN I+
Sbjct: 61 AALITGITPQKAMQEGLPEPEFIAKIHAELSKSNTTSLGYNSIRFDDEVTRYTCYRNFID 120
Query: 425 PYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHD 484
PY W+N SRWDL++V++A + L P G+ WP + G SFKLEHLS N + H AHD
Sbjct: 121 PYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFTSFKLEHLSVANGIEHSNAHD 180
Query: 485 ALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSY 544
A++DV AT+ +A+ ++ P+LF++ S+R K+ + + P +++ M + Y
Sbjct: 181 AMADVIATIEMAKKVKAAQPKLFDYFYSMRNKRKLNELVDIVNMTPLMHVSGMMGRECQY 240
Query: 545 ISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIH 602
S + P+ HP N N +IT +L DP+ L ++++ L K+ +P+ ++H
Sbjct: 241 TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKREELGGLLPVPVKLVH 300
Query: 603 LNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF----LDYKIN 658
LN+ PI ++ K L++ D N+ + + + I +K+ ++ +
Sbjct: 301 LNKCPI-LAPAKTLTAENAEVIGIDRQKCLSNL---ALLRQHPEIREKLISLFSIEREFE 356
Query: 659 NSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNF 718
SD ++D +LY+ F S D + I+R P L+ ++ F++K+++ L+F YRAR++
Sbjct: 357 KSD---DVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARHY 413
Query: 719 IETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI 769
TL +E +RW ++ F ++ I + L +E+L+ + + KI
Sbjct: 414 AGTLDEQEQRRWAQHCREVFESQ------IEEYMLNLENLVHEHESDEKKI 458
>gi|254253593|ref|ZP_04946910.1| DNA polymerase I - 3'-5' exonuclease and polymerase [Burkholderia
dolosa AUO158]
gi|124898238|gb|EAY70081.1| DNA polymerase I - 3'-5' exonuclease and polymerase [Burkholderia
dolosa AUO158]
Length = 736
Score = 306 bits (784), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 145/294 (49%), Positives = 200/294 (68%), Gaps = 4/294 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R P GALYG I MLR++ K A Y AC+FDAKGK FR+
Sbjct: 18 VDGSSYLYRAYHAMPDLRGPGGEPTGALYGIINMLRRMRKEVSAEYSACVFDAKGKTFRD 77
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L LQ+ IH V+A+GWP+L++ GVEADDVIGTLA++A + +
Sbjct: 78 ELYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVDGVEADDVIGTLAREA-ERRGM 136
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VI+ST DKD+AQLV+ + L+N N+ DR +I++FGV PE+I+DY +LIGD DN+
Sbjct: 137 NVIVSTGDKDLAQLVTEHVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALIGDTVDNV 196
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTAVK L+QY +L+ +I +A IKGV+G NLR AL++LP +K++T+ T CD
Sbjct: 197 PGVEKCGPKTAVKWLSQYGTLDGVIEHAAEIKGVVGDNLRRALDFLPLGRKLVTVDTACD 256
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYNIPLKNHD-DNISDENYDIDCSDAK 1069
L ++ SI SL + LL +F +Y + D+ E D D D +
Sbjct: 257 LAPHLESIDASLKTDGEARDLLRDIFARYGFKTWLREIDSAPAEGSDTDAPDGE 310
>gi|384227400|ref|YP_005619150.1| exonuclease I [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)]
gi|311086276|gb|ADP66358.1| exonuclease I [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)]
Length = 505
Score = 306 bits (783), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 195/469 (41%), Positives = 267/469 (56%), Gaps = 31/469 (6%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL+YDYETFG++ D+P QFA IRTDI LN ID+P YC P+ D+LPDP + LIT I
Sbjct: 37 TFLFYDYETFGIHTALDKPAQFACIRTDINLNIIDDPQYFYCFPSDDYLPDPGSVLITHI 96
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ+ NG EY F+ I I ++ T VGYN I FDDEITR +F+RN +PYE WK
Sbjct: 97 TPQYTEKNGTNEYNFSQKIYDILMQSNTCVVGYNNINFDDEITRNIFYRNFFDPYEWSWK 156
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD++N+++A Y L P GI WP G SFKL L+ NN+ H AH+A+SDV A
Sbjct: 157 NGNSRWDILNLLRACYALRPTGINWPKNELGLTSFKLSDLTKTNNIVHLNAHNAVSDVYA 216
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF+F +RKK + I +P YI+ F + + +S + PI
Sbjct: 217 TIEIAKLVKKKQPRLFDFFFKIRKKNELYKLIDLRNFQPIIYISAYFGAIYHNMSCILPI 276
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIV 609
H N NILI +L D K L+N KI CF K D + ++HLNR PI+
Sbjct: 277 AWHENNSNILIAIDLFKDIKT-LINMCKKI----CFDSIFIKNLLDSGVVLLHLNRCPIL 331
Query: 610 --ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
I ++ N + ++F LN + IK + N K IF K NN++ N+D
Sbjct: 332 APIQVIRKEDYNRLNFHRFSLNKKIELIKKNMFFIQNI---KIIF--SKNNNTNQFFNVD 386
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFC-FENKKLEELIFLYRARNFIETLSYKE 726
E+YN F + KD K+ I+R+ P L ++ FC F + +L+ L F YRARNF TL E
Sbjct: 387 LEIYNGFFNSKDKKKIQIIRNTDPVFLKHI-FCNFHDSRLKNLFFRYRARNFFYTLDDNE 445
Query: 727 LKRWKKYRIS-----RFYNKKNNLYNINMFYLEIESLLKKANEHDTKIL 770
K W K+ ++ F KNN I+ LLKK + + K++
Sbjct: 446 KKIWLKHCMNVLNPVSFQEYKNN----------IQFLLKKYSNNTEKVV 484
>gi|417320005|ref|ZP_12106551.1| exonuclease I [Vibrio parahaemolyticus 10329]
gi|328472968|gb|EGF43816.1| exonuclease I [Vibrio parahaemolyticus 10329]
Length = 473
Score = 306 bits (783), Expect = 7e-80, Method: Composition-based stats.
Identities = 163/471 (34%), Positives = 265/471 (56%), Gaps = 20/471 (4%)
Query: 306 LHNGNS-TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPR 364
+H N TF ++DYET+G N +DRP QFA +RTD N I P+++YC+ D+LP P
Sbjct: 1 MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPE 60
Query: 365 ACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLIN 424
A LIT ITPQ + G+ E +F + I+ KP T S+GYN+I FDDE+TR+ +RN I+
Sbjct: 61 AALITGITPQKAMQEGLSEPEFIAKIQAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFID 120
Query: 425 PYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHD 484
PY W+N SRWDL++V++A + L P GI WP +G SFKLEHLS N + H AHD
Sbjct: 121 PYAWSWQNGNSRWDLLDVLRACHALRPEGIEWPENEDGFTSFKLEHLSVKNGIEHSNAHD 180
Query: 485 ALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSY 544
A++DV AT+ +A+ ++ P+LF++ S+R K+ + + P +++ M + Y
Sbjct: 181 AMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY 240
Query: 545 ISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIH 602
S + P+ HP N N +IT +L DP+ L ++ + L K+ + +P+ ++H
Sbjct: 241 TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVH 300
Query: 603 LNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF----LDYKIN 658
LN+ PI ++ K L++ D N+ + + + I +K+ ++ +
Sbjct: 301 LNKCPI-LAPAKTLTAENAENIGIDRQKCLDNL---ALLRQHPEIREKLIGLFSIERQFE 356
Query: 659 NSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNF 718
SD ++D +LY+ F S D + I+R P L+ ++ F++K+++ L+F YRARNF
Sbjct: 357 KSD---DVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARNF 413
Query: 719 IETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI 769
TL +E +RW + F ++ I + L +E+L+ + + KI
Sbjct: 414 PGTLDEQEQRRWALHCREVFESQ------IEEYMLNLENLVHEHESDEKKI 458
>gi|433657510|ref|YP_007274889.1| Exodeoxyribonuclease I [Vibrio parahaemolyticus BB22OP]
gi|432508198|gb|AGB09715.1| Exodeoxyribonuclease I [Vibrio parahaemolyticus BB22OP]
Length = 473
Score = 306 bits (783), Expect = 7e-80, Method: Composition-based stats.
Identities = 162/471 (34%), Positives = 264/471 (56%), Gaps = 20/471 (4%)
Query: 306 LHNGNS-TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPR 364
+H N TF ++DYET+G N +DRP QFA +RTD N I P+++YC+ D+LP P
Sbjct: 1 MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPE 60
Query: 365 ACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLIN 424
A LIT ITPQ + G+ E +F + I KP T S+GYN+I FDDE+TR+ +RN I+
Sbjct: 61 AALITGITPQKAMQEGLSEPEFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFID 120
Query: 425 PYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHD 484
PY W+N SRWDL++V++A + L P G+ WP +G SFKLEHLS N + H AHD
Sbjct: 121 PYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFTSFKLEHLSVKNGIEHSNAHD 180
Query: 485 ALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSY 544
A++DV AT+ +A+ ++ P+LF++ S+R K+ + + P +++ M + Y
Sbjct: 181 AMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRERQY 240
Query: 545 ISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIH 602
S + P+ HP N N +IT +L DP+ L ++ + L K+ + +P+ ++H
Sbjct: 241 TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVH 300
Query: 603 LNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF----LDYKIN 658
LN+ PI ++ K L++ D N+ + + + I +K+ ++ +
Sbjct: 301 LNKCPI-LAPAKTLTAENAENIGIDRQKCLDNL---ALLRQHPEIREKLIGLFSIERQFE 356
Query: 659 NSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNF 718
SD ++D +LY+ F S D + I+R P L+ ++ F++K+++ L+F YRARNF
Sbjct: 357 KSD---DVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARNF 413
Query: 719 IETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI 769
TL +E +RW + F ++ I + L +E+L+ + + KI
Sbjct: 414 PSTLDEQEQRRWALHCREVFESQ------IEEYMLNLENLVHEHESDEKKI 458
>gi|260772965|ref|ZP_05881881.1| exodeoxyribonuclease I [Vibrio metschnikovii CIP 69.14]
gi|260612104|gb|EEX37307.1| exodeoxyribonuclease I [Vibrio metschnikovii CIP 69.14]
Length = 480
Score = 306 bits (783), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 167/485 (34%), Positives = 269/485 (55%), Gaps = 32/485 (6%)
Query: 307 HNGN--STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPR 364
HN + TF + DYET+G + +DRP QFA +RTD+ N I P+++YC+ D+LP P
Sbjct: 7 HNADHQQTFFFLDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPSDYLPSPE 66
Query: 365 ACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLIN 424
A LIT ITPQ + G+PE +F + I P T S+GYN+I FDDE+TR+ +RN I+
Sbjct: 67 AALITGITPQKAMAEGLPEPEFIARIHAELATPNTTSLGYNSIRFDDEVTRYTCYRNFID 126
Query: 425 PYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHD 484
PY W+ SRWDL++V++A + L P GI WP G SFKLEHLS N + H AHD
Sbjct: 127 PYAWSWQQGNSRWDLLDVMRACHALRPEGIEWPENQEGFTSFKLEHLSKANGIEHSNAHD 186
Query: 485 ALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSY 544
A++DV AT+ LA+ I+ P+LF++ LS+R K+ ++ + P +++ M + SY
Sbjct: 187 AMADVIATIELAKKIKAAQPKLFDYFLSMRHKRKLIDLVDIVNMTPLMHVSGMLGRERSY 246
Query: 545 ISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMI 601
S + PI HP N+N +I +L +P+ ++ L K + E P+ +I
Sbjct: 247 TSWVVPIAWHPTNQNAVIVVDLAKNPEPLFELTSEQLLQRLYTKHDDLAEGELPAPVKLI 306
Query: 602 HLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKI---- 657
HLN+ PI ++ K L++ N A I + + + I ++ L K+
Sbjct: 307 HLNKCPI-LAPAKTLTAE---------NAATIGINREQCLAHLSQIRQQPTLREKLVDVF 356
Query: 658 ---NNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYR 714
+ ++D +LY+ F S D + I+RS +P+ L++++ F ++++ L+F YR
Sbjct: 357 SAERDFSASSDVDSQLYDGFFSPSDRAAMDIIRSAAPESLADLDIQFSDQRIAPLLFRYR 416
Query: 715 ARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK---ILN 771
AR++ TL+ E +RW + F + + + L +E+L+++ ++HD K IL
Sbjct: 417 ARHYPWTLNETEQRRWASHCQDYFATQ------LPSYMLNLENLVEQ-HQHDAKKIAILK 469
Query: 772 ALLMY 776
A+ Y
Sbjct: 470 AVYHY 474
>gi|414562904|ref|YP_005618095.1| exonuclease I [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)]
gi|311087440|gb|ADP67520.1| exonuclease I [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)]
Length = 505
Score = 305 bits (782), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 195/469 (41%), Positives = 267/469 (56%), Gaps = 31/469 (6%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL+YDYETFG++ D+P QFA IRTDI LN ID+P YC P+ D+LPDP + LIT I
Sbjct: 37 TFLFYDYETFGIHTALDKPAQFACIRTDINLNIIDDPQYFYCFPSDDYLPDPGSVLITHI 96
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ+ NG EY F+ I I ++ T VGYN I FDDEITR +F+RN +PYE WK
Sbjct: 97 TPQYTEKNGTNEYNFSQKIYDILMQSNTCVVGYNNINFDDEITRNIFYRNFFDPYEWSWK 156
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWD++N+++A Y L P GI WP G SFKL L+ NN+ H AH+A+SDV A
Sbjct: 157 NGNSRWDILNLLRACYALRPTGINWPKNELGLTSFKLSDLTKTNNIVHLNAHNAVSDVYA 216
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+L++ PRLF+F +RKK + I +P YI+ F + + +S + PI
Sbjct: 217 TIEIAKLVKKKQPRLFDFFFKIRKKNELYKLIDLRNFQPIIYISAYFGAIYHNMSCILPI 276
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIV 609
H N NILI +L D K L+N KI CF K D + ++HLNR PI+
Sbjct: 277 AWHENNSNILIAIDLFKDIKT-LINMCKKI----CFDSIFIKNLLDSGVVLLHLNRCPIL 331
Query: 610 --ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
I ++ N + ++F LN + IK + N K IF K NN++ N+D
Sbjct: 332 APIQVIRKEDYNRLNFHRFSLNKKIELIKKNMFFIQNI---KIIF--SKNNNTNQFFNVD 386
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFC-FENKKLEELIFLYRARNFIETLSYKE 726
E+YN F + KD K+ I+R+ P L ++ FC F + +L+ L F YRARNF TL E
Sbjct: 387 LEIYNGFFNSKDKKKIQIIRNTDPVFLKHI-FCNFHDSRLKNLFFRYRARNFFYTLDDNE 445
Query: 727 LKRWKKYRIS-----RFYNKKNNLYNINMFYLEIESLLKKANEHDTKIL 770
K W K+ ++ F KNN I+ LLKK + + K++
Sbjct: 446 KKIWLKHCMNVLNPVSFQEYKNN----------IQFLLKKYSNNTEKVV 484
>gi|422349987|ref|ZP_16430875.1| hypothetical protein HMPREF9465_01765 [Sutterella wadsworthensis
2_1_59BFAA]
gi|404657836|gb|EKB30718.1| hypothetical protein HMPREF9465_01765 [Sutterella wadsworthensis
2_1_59BFAA]
Length = 489
Score = 305 bits (782), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 169/491 (34%), Positives = 262/491 (53%), Gaps = 19/491 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
++TF WYD+ETFGL+ RRDRP QFA IRTD+ LN + + Y +P+ D+LP P +CL+T
Sbjct: 4 STTFYWYDFETFGLDCRRDRPAQFAGIRTDMDLNPQGDGDVFYSRPSGDYLPSPESCLLT 63
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
+TPQ C GIPE KFA + +PGTIS+GYN FD+E+ RF+FWRN ++PY +
Sbjct: 64 GMTPQICEERGIPESKFAGEVWSRLNRPGTISIGYNASGFDNEVARFLFWRNFLDPYSHQ 123
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKP--------SFKLEHLSFVNNLSHKK 481
+N CS WDL ++ A + L GI WP + + P SF+LE LS N + H
Sbjct: 124 HRNGCSCWDLYPLVCAVWALRGDGIKWPLRKDVDPESNDERSVSFRLECLSKANGIVHAH 183
Query: 482 AHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSK 541
+H+ALSD ATLGLA LIR PRL+ + L R ++ V A + P +I+ F
Sbjct: 184 SHEALSDAMATLGLAVLIRKTEPRLWKWALENRSREAVKAAV---TKGPVVWISPKFGQA 240
Query: 542 HSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSF---KEDIPI 598
++ + I + N + W+L DP +I+ L ++ +E +P+
Sbjct: 241 RGFLRIAARIPFPGESGNSALMWDLSVDPLIVTKLSDEEIKSRLFARREDLADGEEPLPV 300
Query: 599 SMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKIN 658
+ +N SP V +NLKVLS M R+ N + + N I ++
Sbjct: 301 YRLAMNNSPFVCANLKVLSPERMDRFGVKPQEILANWERFKELGN--VIAGRLAGLMGRR 358
Query: 659 NSDLELNIDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARN 717
++D LY+ F S D +A +R M+P+ L+ F++++ +L+ YRARN
Sbjct: 359 ERPAPKDVDFGLYDGGFASGHDVEMMARVRGMTPESLAKGGIHFDDERFNQLLVRYRARN 418
Query: 718 FIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK--ILNALLM 775
+ ETL+ +E +W + SR + + ++ ++ EI+ L + E + K +L AL
Sbjct: 419 WQETLNDEERSQWTFFCRSRLMDGADGALTVSAYFDEIDRLQESTLEDEEKQLVLEALYE 478
Query: 776 YGKIDGSSCIY 786
+G+ G +C +
Sbjct: 479 WGERAGEACAF 489
>gi|237749335|ref|ZP_04579815.1| DNA polymerase I [Oxalobacter formigenes OXCC13]
gi|229380697|gb|EEO30788.1| DNA polymerase I [Oxalobacter formigenes OXCC13]
Length = 914
Score = 305 bits (781), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 144/279 (51%), Positives = 200/279 (71%), Gaps = 5/279 (1%)
Query: 770 LNALLMYGKIDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIF 829
+N LL+ +DGSS +YRA++ALPD+RN P GA+YG + MLR+L K+Y Y ACIF
Sbjct: 1 MNKLLLL--VDGSSYLYRAYHALPDLRNSAGEPTGAIYGFLNMLRRLQKDYPTAYRACIF 58
Query: 830 DAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLA 889
DAKGK FRN LY YKA R MP +L+ Q I ++V +GWPIL ++GVEADDVIGTLA
Sbjct: 59 DAKGKTFRNDLYQEYKANRAAMPDDLVEQTGHILELVDMLGWPILQVEGVEADDVIGTLA 118
Query: 890 KQAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFS 947
+A + I+ST DKDM+QLV +K+ L+N NN++ DR +I +FGV PE+IVDY S
Sbjct: 119 VKA-HEDGFDTIVSTGDKDMSQLVDDKVTLVNTMNNEVLDREGVIKKFGVPPERIVDYLS 177
Query: 948 LIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKK 1007
L+GD SDN+PGV K+GPKTAVK L QY++L+ +I NA NI G +G+NLR +L+WLP+ +
Sbjct: 178 LVGDTSDNVPGVAKVGPKTAVKWLTQYHTLDGVIENAQNIGGAVGENLRQSLDWLPQAHE 237
Query: 1008 ILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
++ I+T+C+L SI SL+ +P++ + L + F ++
Sbjct: 238 LVRIRTNCELPDKFASIETSLLKKPENTEGLKKAFERFG 276
>gi|315122155|ref|YP_004062644.1| exonuclease I [Candidatus Liberibacter solanacearum CLso-ZC1]
gi|313495557|gb|ADR52156.1| exonuclease I [Candidatus Liberibacter solanacearum CLso-ZC1]
Length = 472
Score = 305 bits (781), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 173/470 (36%), Positives = 266/470 (56%), Gaps = 17/470 (3%)
Query: 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKIT 372
F+ YDYETFGL+V RDRP QFA IR D L TI + + +CKP+ D+L DP + LIT IT
Sbjct: 4 FVIYDYETFGLDVARDRPAQFAGIRIDHQLETIQSKEVFFCKPSDDYLVDPESVLITGIT 63
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
PQ L +G+ E++FA + + F KP T GYN I FDD+ ++ +F+RN +PY +KN
Sbjct: 64 PQKALRDGVVEHEFAQRVYQFFCKPNTCIFGYNNIRFDDKYSQNIFYRNFYDPYGWSYKN 123
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRAT 492
SRWDLINV++A Y SP GI WP++++G PSFKL+ L+ N + + AHDA DV AT
Sbjct: 124 GNSRWDLINVMRAIYAFSPDGIQWPHRDDGFPSFKLQDLALANGIEYVNAHDAEQDVDAT 183
Query: 493 LGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPIC 552
L LARL+R P+LFN++ + R K ++ + I P +++ F + + +L+ PI
Sbjct: 184 LALARLVRREKPKLFNYLYNSRNKMHLKSLIDIRNLTPLVHVSSKFGAAQANTALIAPIA 243
Query: 553 IHPMNKNILITWNLLHDPKKFLLNDINKI----RDYLCFKKNSFKEDIPISMIHLNRSPI 608
HP N N +I NL D + +L D++ I R + + + +P+ +H+NR P+
Sbjct: 244 WHPRNANEIIACNLSGDMQ--VLQDLDSIELGKRLFTRHDQLNGLSPVPLKSVHINRCPV 301
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
+ + S R D N+K ++ + +K+ Y L ++D
Sbjct: 302 LFP-IGSFHSKKFERLGIDDKRCVDNLKLLRQQVD---LQEKVIAIYDKPFVSLSEDVDS 357
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
LY+ F+S +D + P+KLS +NF F +++L EL+F YRARNF TL KE +
Sbjct: 358 RLYDGFLSDEDCKMRDCIPLTEPEKLSTLNFQFTDQRLPELLFRYRARNFPHTLDSKEKQ 417
Query: 729 RWKKYRISRFYNKKNNLYNINMFYLEIESLLK--KANEHDTKILNALLMY 776
W ++R + F + I + ++ +LL K+NE + +++ L Y
Sbjct: 418 AWLEHRKAIFTRSR-----IEEYENKLHTLLNAYKSNEREERLVQLLFDY 462
>gi|374367613|ref|ZP_09625674.1| DNA polymerase I [Cupriavidus basilensis OR16]
gi|373100916|gb|EHP41976.1| DNA polymerase I [Cupriavidus basilensis OR16]
Length = 937
Score = 305 bits (781), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 137/270 (50%), Positives = 195/270 (72%), Gaps = 4/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++ALPD+RN + P GA+YG I MLRKL ++ A Y AC+FDAKGK FR+
Sbjct: 11 VDGSSYLYRAYHALPDLRNGEGLPTGAIYGMINMLRKLRSDFPAEYSACVFDAKGKTFRD 70
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LYP+YK R MP +L QI IH+ V+A+GWPI++++GVEADDVIGTLA++A T +
Sbjct: 71 DLYPAYKEHRPSMPEDLAKQIEPIHEAVRALGWPIVVVEGVEADDVIGTLARRA-TAEGM 129
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
+ ++ST DKD+AQLV + + L+N + +I D + ++FGV P++IVDY SLIGD DN+
Sbjct: 130 RTVVSTGDKDLAQLVDDHVTLVNTMSGEILDPPGVAAKFGVPPDRIVDYLSLIGDAVDNV 189
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV K+GPKTAVK L +Y +L++++ A IKGV+G+NLR L WLPK ++++T+K DCD
Sbjct: 190 PGVPKVGPKTAVKWLTEYGTLDDVMAGAPGIKGVVGENLRNTLEWLPKARELVTVKVDCD 249
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
LT ++ L +D+ L+ F +Y
Sbjct: 250 LTSSLADF-HQLKGGNEDKDRLIDFFARYG 278
>gi|254226438|ref|ZP_04920025.1| exodeoxyribonuclease I [Vibrio cholerae V51]
gi|125621060|gb|EAZ49407.1| exodeoxyribonuclease I [Vibrio cholerae V51]
Length = 474
Score = 305 bits (781), Expect = 1e-79, Method: Composition-based stats.
Identities = 162/471 (34%), Positives = 266/471 (56%), Gaps = 16/471 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYET+G+N +DRP QFA +RTD+ N I P+++YC+ D+LP P A LIT I
Sbjct: 8 TFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G+ E +F + I P TIS+GYN+I FDDE+TR+ +RN I+PY W+
Sbjct: 68 TPQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
+ SRWDL++V++A + L P GI WP ++G SFKLEHLS N + H AHDA++DV A
Sbjct: 128 HGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+ ++ P+LF++ ++R K+ + I P +++ M + Y S + PI
Sbjct: 188 TIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVPI 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L DP+ L D ++ L + D +P+ ++HLN+ PI
Sbjct: 248 AWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++ + D ++ I + I +K+ + + E ++D
Sbjct: 308 -LAPAKTLTAENAQKIGIDREQCLAHLNV---IRQHPEIREKLVTVFSQEREFNQESDVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LY F S D + I+R+ +P+ L ++ +K++E L+F YRAR++ TL+ E
Sbjct: 364 SQLYTGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLL--KKANEHDTKILNALLMY 776
+RW + R Y ++ N+ + L +E+L+ +A+ IL ++ Y
Sbjct: 424 RRWAAH--CRDYFER----NLEGYMLNLENLVHEHQADPKKMAILKSVYHY 468
>gi|28898075|ref|NP_797680.1| exonuclease I [Vibrio parahaemolyticus RIMD 2210633]
gi|153836551|ref|ZP_01989218.1| exodeoxyribonuclease I [Vibrio parahaemolyticus AQ3810]
gi|260366376|ref|ZP_05778815.1| exodeoxyribonuclease I [Vibrio parahaemolyticus K5030]
gi|260878424|ref|ZP_05890779.1| exodeoxyribonuclease I [Vibrio parahaemolyticus AN-5034]
gi|260897003|ref|ZP_05905499.1| exodeoxyribonuclease I [Vibrio parahaemolyticus Peru-466]
gi|28806289|dbj|BAC59564.1| exodeoxyribonuclease I [Vibrio parahaemolyticus RIMD 2210633]
gi|149750149|gb|EDM60894.1| exodeoxyribonuclease I [Vibrio parahaemolyticus AQ3810]
gi|308087707|gb|EFO37402.1| exodeoxyribonuclease I [Vibrio parahaemolyticus Peru-466]
gi|308091094|gb|EFO40789.1| exodeoxyribonuclease I [Vibrio parahaemolyticus AN-5034]
gi|308113162|gb|EFO50702.1| exodeoxyribonuclease I [Vibrio parahaemolyticus K5030]
Length = 473
Score = 305 bits (780), Expect = 2e-79, Method: Composition-based stats.
Identities = 162/471 (34%), Positives = 264/471 (56%), Gaps = 20/471 (4%)
Query: 306 LHNGNS-TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPR 364
+H N TF ++DYET+G N +DRP QFA +RTD N I P+++YC+ D+LP P
Sbjct: 1 MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPE 60
Query: 365 ACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLIN 424
A LIT ITPQ + G+ E +F + I KP T S+GYN+I FDDE+TR+ +RN I+
Sbjct: 61 AALITGITPQKAMQEGLSEPEFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFID 120
Query: 425 PYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHD 484
PY W+N SRWDL++V++A + L P G+ WP +G SFKLEHLS N + H AHD
Sbjct: 121 PYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFTSFKLEHLSVKNGIEHSNAHD 180
Query: 485 ALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSY 544
A++DV AT+ +A+ ++ P+LF++ S+R K+ + + P +++ M + Y
Sbjct: 181 AMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY 240
Query: 545 ISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIH 602
S + P+ HP N N +IT +L DP+ L ++ + L K+ + +P+ ++H
Sbjct: 241 TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVH 300
Query: 603 LNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF----LDYKIN 658
LN+ PI ++ K L++ D N+ + + + I +K+ ++ +
Sbjct: 301 LNKCPI-LAPAKTLTAENAENIGIDRQKCLDNL---ALLRQHPEIREKLIGLFSIERQFE 356
Query: 659 NSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNF 718
SD ++D +LY+ F S D + I+R P L+ ++ F++K+++ L+F YRARNF
Sbjct: 357 KSD---DVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRARNF 413
Query: 719 IETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI 769
TL +E +RW + F ++ I + L +E+L+ + + KI
Sbjct: 414 PGTLDEQEQRRWALHCREVFESQ------IEEYMLNLENLVHEHESDEKKI 458
>gi|27366077|ref|NP_761605.1| exonuclease I [Vibrio vulnificus CMCP6]
gi|27362277|gb|AAO11132.1| Exodeoxyribonuclease I [Vibrio vulnificus CMCP6]
Length = 473
Score = 305 bits (780), Expect = 2e-79, Method: Composition-based stats.
Identities = 159/475 (33%), Positives = 262/475 (55%), Gaps = 15/475 (3%)
Query: 307 HNGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRAC 366
+ TF ++DYET+G + +DRP QFA++RTD N I P+++YC+P D+LP P A
Sbjct: 3 QDNQPTFFFFDYETWGTSPAKDRPSQFASVRTDENFNIIGEPLVIYCRPPADYLPAPEAA 62
Query: 367 LITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPY 426
LIT ITPQ G+PE +F + I +P T S+GYN+I FDDE+TR+ +RN ++PY
Sbjct: 63 LITGITPQKAQKEGLPEPEFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPY 122
Query: 427 EREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDAL 486
W+N SRWDL++V++A + L P G+ WP G SFKLEHLS N + H AHDA+
Sbjct: 123 SWSWQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFTSFKLEHLSVANGIEHSNAHDAM 182
Query: 487 SDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYIS 546
+DV AT+ +A+ ++ P+LF++ S+R K+ + I P +++ M + Y S
Sbjct: 183 ADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQYTS 242
Query: 547 LMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLN 604
+ P+ HP N N +I +L DP+ D + + + L + + + +P+ ++HLN
Sbjct: 243 WIVPLAWHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLN 302
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLE 663
+ PI ++ K L++ D N+ + I + + +K+ + I +
Sbjct: 303 KCPI-LAPAKTLTAENAANIGIDREQCLANL---ALIRQHPEVREKLVQLFSIEREFEKS 358
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
++D LY+ F S D + I+R P L+ ++ F +K++E L+F YRARN+ TL
Sbjct: 359 HDVDTMLYDGFFSPADKASMDIIRQTDPTHLAALDITFNDKRIEPLLFRYRARNYPWTLD 418
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLL--KKANEHDTKILNALLMY 776
E +RW + F ++ I + L +E+L+ +++E IL ++ Y
Sbjct: 419 ENEQRRWANHCREYFESR------IEEYMLNLENLVHEHESDEKKMAILKSVYRY 467
>gi|311105001|ref|YP_003977854.1| DNA polymerase I [Achromobacter xylosoxidans A8]
gi|310759690|gb|ADP15139.1| DNA polymerase I [Achromobacter xylosoxidans A8]
Length = 905
Score = 304 bits (779), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 135/270 (50%), Positives = 195/270 (72%), Gaps = 4/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRAF+A+PD+RN P GALYG + MLRKL +++A Y ACIFDA+GK FR+
Sbjct: 8 VDGSSYLYRAFHAMPDLRNAQGEPTGALYGVVNMLRKLVSDHKAEYAACIFDARGKTFRD 67
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LYP YK+ R MP +L QI IH V+A+GWP+L I+GVEADDVIGTLAK+A +H++
Sbjct: 68 DLYPEYKSHRPPMPEDLAAQIEPIHSAVRALGWPVLAIEGVEADDVIGTLAKRA-AEHDV 126
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
I+ST DKD+AQLV++ + L+N ++ D ++++FGV P++IVDY L+GD DN+
Sbjct: 127 YTIVSTGDKDLAQLVNSHVTLVNTMTGEVLDEAGVVNKFGVPPDRIVDYLMLVGDAVDNV 186
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV K+GPKTAVK L ++ S++ ++ A +IKGV G NLR A+ P +++LT+K DCD
Sbjct: 187 PGVTKVGPKTAVKWLTEFGSIDKLVEGAEDIKGVAGSNLREAIPNFPLTRQLLTVKYDCD 246
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L ++ ++ + L +P+DE L +L+ +Y
Sbjct: 247 LAGHVDAV-DDLTPRPRDEATLTELYERYG 275
>gi|323491335|ref|ZP_08096520.1| exonuclease I [Vibrio brasiliensis LMG 20546]
gi|323314461|gb|EGA67540.1| exonuclease I [Vibrio brasiliensis LMG 20546]
Length = 474
Score = 304 bits (779), Expect = 2e-79, Method: Composition-based stats.
Identities = 162/460 (35%), Positives = 260/460 (56%), Gaps = 17/460 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYET+G + +DRP QFA +RTD+ N I P+++YC+P D+LP P A LIT I
Sbjct: 8 TFFFFDYETWGTSPAKDRPCQFAGVRTDMDFNIIGEPLVIYCQPPADYLPAPEAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G+ E +F + I + P TIS+GYN+I FDDE+TR+ +RN I+PY W+
Sbjct: 68 TPQTAESKGLSEPEFIAKIHEQLAMPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++A Y L P GI WP G SFKLE LS N + H+ AHDA++DV A
Sbjct: 128 NGNSRWDLLDVMRACYALRPEGIEWPENEEGFISFKLESLSVANGIEHENAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+ ++ P+LF++ LS+R K+ + + P +++ M + +Y S + P+
Sbjct: 188 TIEMAKKVKAAQPKLFDYFLSMRHKRKLNELVDIVNMTPLMHVSGMLGKECNYTSWIVPV 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L DP+ L D ++ L K + D +P+ ++ LN+ PI
Sbjct: 248 AWHPTNQNAVICVDLAKDPQALLDLDTEQLNQRLYTKHSDLGPDELPVPVKLVQLNKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++ + D +N+ + + + I +K+ Y I + ++D
Sbjct: 308 -LAPAKTLTAENAEKIGIDREKCLENL---ALLRKHPEIREKLIGVYAIEREYEKSQDVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY+ F S D + I+R P L+ ++ F + ++ L+F YRARNF TL E
Sbjct: 364 SMLYDGFFSPADKAAMDIIRETDPNNLAALDISFNDDRIAPLLFRYRARNFPWTLDESEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDT 767
+RW + F ++ I + L +E+L A+EH++
Sbjct: 424 QRWALHCRDYFESR------IEDYMLNLENL---AHEHES 454
>gi|254291686|ref|ZP_04962473.1| exodeoxyribonuclease I [Vibrio cholerae AM-19226]
gi|150422370|gb|EDN14330.1| exodeoxyribonuclease I [Vibrio cholerae AM-19226]
Length = 474
Score = 304 bits (779), Expect = 2e-79, Method: Composition-based stats.
Identities = 162/477 (33%), Positives = 266/477 (55%), Gaps = 14/477 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYET+G+N +DRP QFA +RTD+ N I P+++YC+ D+LP P A LIT I
Sbjct: 8 TFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G+ E +F + I P TIS+GYN+I FDDE+TR+ +RN I+PY W+
Sbjct: 68 TPQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
+ SRWDL++V++A + L P GI WP ++G SFKLEHLS N + H AHDA++DV A
Sbjct: 128 HGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+ ++ P+LF++ ++R K+ + I P +++ M Y S + PI
Sbjct: 188 TIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRDRHYTSWIVPI 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L DP+ L D ++ L + D +P+ ++HLN+ PI
Sbjct: 248 AWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++ + D ++ I + I +K+ + + E ++D
Sbjct: 308 -LAPAKTLTAENAQKIGIDREQCLAHLNV---IRQHPEIREKLVTVFSQEREFNQESDVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LY F S D + I+R+ +P+ L ++ +K++E L+F YRAR++ TL+ E
Sbjct: 364 SQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGKIDGSSC 784
+RW + R Y ++ N+ + L +E+L+ + KI +Y ++ +C
Sbjct: 424 RRWAAH--CRDYFER----NLEGYLLNLENLVHEHQADPKKIAILKSVYHYVEKLAC 474
>gi|260901800|ref|ZP_05910195.1| exodeoxyribonuclease I [Vibrio parahaemolyticus AQ4037]
gi|308108118|gb|EFO45658.1| exodeoxyribonuclease I [Vibrio parahaemolyticus AQ4037]
Length = 473
Score = 304 bits (779), Expect = 2e-79, Method: Composition-based stats.
Identities = 164/474 (34%), Positives = 263/474 (55%), Gaps = 26/474 (5%)
Query: 306 LHNGNS-TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPR 364
+H N TF ++DYET+G N +DRP QFA +RTD N I P+++YC+ D+LP P
Sbjct: 1 MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPE 60
Query: 365 ACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLIN 424
A LIT ITPQ + G+ E +F + I KP T S+GYN+I FDDE+TR+ +RN I+
Sbjct: 61 AALITGITPQKAMQEGLSEPEFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFID 120
Query: 425 PYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHD 484
PY W+N SRWDL++V++A + L P G+ WP +G SFKLEHLS N + H AHD
Sbjct: 121 PYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFTSFKLEHLSVKNGIEHSNAHD 180
Query: 485 ALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSY 544
A++DV AT+ +A+ ++ P+LF++ S+R K+ + + P +++ M + Y
Sbjct: 181 AMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY 240
Query: 545 ISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIH 602
S + P+ HP N N +IT +L DP+ L ++ + L K+ + +P+ ++H
Sbjct: 241 TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVH 300
Query: 603 LNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSI-LNNTY--IWKKIF----LDY 655
LN+ PI+ + + N N KC ++ L Y I +K+ ++
Sbjct: 301 LNKCPILAPAKTLTAENAE-------NIGIDRQKCLDNLALLRQYPEIREKLIGLFSIER 353
Query: 656 KINNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRA 715
+ SD ++D +LY+ F S D + I+R P L+ ++ F++K+++ L+F YRA
Sbjct: 354 QFEKSD---DVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKRIKPLLFRYRA 410
Query: 716 RNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKI 769
RNF TL +E +RW + F ++ I + L +E+L+ + + KI
Sbjct: 411 RNFPGTLDEQEQRRWALHCREVFESQ------IEEYMLNLENLVHEHESDEKKI 458
>gi|257471605|ref|ZP_05635604.1| exonuclease I [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)]
Length = 505
Score = 304 bits (779), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 194/468 (41%), Positives = 266/468 (56%), Gaps = 31/468 (6%)
Query: 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKIT 372
FL+YDYETFG++ D+P QFA IRTDI LN ID+P YC P+ D+LPDP + LIT IT
Sbjct: 38 FLFYDYETFGIHTALDKPAQFACIRTDINLNIIDDPQYFYCFPSDDYLPDPGSVLITHIT 97
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
PQ+ NG EY F+ I I ++ T VGYN I FDDEITR +F+RN +PYE WKN
Sbjct: 98 PQYTEKNGTNEYNFSQKIYDILMQSNTCVVGYNNINFDDEITRNIFYRNFFDPYEWSWKN 157
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRAT 492
SRWD++N+++A Y L P GI WP G SFKL L+ NN+ H AH+A+SDV AT
Sbjct: 158 GNSRWDILNLLRACYALRPTGINWPKNELGLTSFKLSDLTKTNNIVHLNAHNAVSDVYAT 217
Query: 493 LGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPIC 552
+ +A+L++ PRLF+F +RKK + I +P YI+ F + + +S + PI
Sbjct: 218 IEIAKLVKKKQPRLFDFFFKIRKKNELYKLIDLRNFQPIIYISAYFGAIYHNMSCILPIA 277
Query: 553 IHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIV- 609
H N NILI +L D K L+N KI CF K D + ++HLNR PI+
Sbjct: 278 WHENNSNILIAIDLFKDIKT-LINMCKKI----CFDSIFIKNLLDSGVVLLHLNRCPILA 332
Query: 610 -ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
I ++ N + ++F LN + IK + N K IF K NN++ N+D
Sbjct: 333 PIQVIRKEDYNRLNFHRFSLNKKIELIKKNMFFIQNI---KIIF--SKNNNTNQFFNVDL 387
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFC-FENKKLEELIFLYRARNFIETLSYKEL 727
E+YN F + KD K+ I+R+ P L ++ FC F + +L+ L F YRARNF TL E
Sbjct: 388 EIYNGFFNSKDKKKIQIIRNTDPVFLKHI-FCNFHDSRLKNLFFRYRARNFFYTLDDNEK 446
Query: 728 KRWKKYRIS-----RFYNKKNNLYNINMFYLEIESLLKKANEHDTKIL 770
K W K+ ++ F KNN I+ LLKK + + K++
Sbjct: 447 KIWLKHCMNVLNPVSFQEYKNN----------IQFLLKKYSNNTEKVV 484
>gi|384424373|ref|YP_005633731.1| Exodeoxyribonuclease I [Vibrio cholerae LMA3984-4]
gi|327483926|gb|AEA78333.1| Exodeoxyribonuclease I [Vibrio cholerae LMA3984-4]
Length = 474
Score = 304 bits (779), Expect = 2e-79, Method: Composition-based stats.
Identities = 161/471 (34%), Positives = 266/471 (56%), Gaps = 16/471 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYET+G+N +DRP QFA +RTD+ N I P+++YC+ D+LP P A LIT I
Sbjct: 8 TFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G+ E +F + I P TIS+GYN+I FDDE+TR+ +RN I+PY W+
Sbjct: 68 TPQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
+ SRWDL++V++A + L P GI WP ++G SFKLEHLS N + H AHDA++DV A
Sbjct: 128 HGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+ ++ P+LF++ ++R K+ + I P +++ M + Y S + PI
Sbjct: 188 TIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVPI 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L DP+ L D ++ L + D +P+ ++HLN+ PI
Sbjct: 248 AWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++ + D ++ I + + +K+ + + E ++D
Sbjct: 308 -LAPAKTLTAENAQKIGIDREQCLAHLNV---IRQHPEVREKLVTVFSQEREFNQESDVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LY F S D + I+R+ +P+ L ++ +K++E L+F YRAR++ TL+ E
Sbjct: 364 SQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLL--KKANEHDTKILNALLMY 776
+RW + R Y ++ N+ + L +E+L+ +A+ IL ++ Y
Sbjct: 424 RRWAAH--CRDYFER----NLEGYMLNLENLVHEHQADPKKMAILKSVYHY 468
>gi|444921402|ref|ZP_21241238.1| Exodeoxyribonuclease I [Wohlfahrtiimonas chitiniclastica SH04]
gi|444507440|gb|ELV07616.1| Exodeoxyribonuclease I [Wohlfahrtiimonas chitiniclastica SH04]
Length = 470
Score = 304 bits (778), Expect = 2e-79, Method: Composition-based stats.
Identities = 165/440 (37%), Positives = 256/440 (58%), Gaps = 22/440 (5%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
+ FL+YDYETFG++ + DR QFAAIRTD N I PI +YC+ A D++P P A LIT
Sbjct: 2 AEFLFYDYETFGISPKYDRIAQFAAIRTDSDFNIIGEPINIYCQQADDYVPSPEAILITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITP +C +G+PE++FA I F+KP T +G+N+I FDDE+TR++F+RN +PY W
Sbjct: 62 ITPDYCNEHGLPEHEFARRIYDEFMKPDTCVMGFNSIRFDDEMTRYLFYRNFFDPYAYAW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
KN SRWD +++++ Y L P GI WP K +G+ S KLE L+ N L+H AHDALSDV
Sbjct: 122 KNGNSRWDALDLVRGVYALRPEGIEWP-KIDGQTSLKLESLTKANGLNHDNAHDALSDVY 180
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ + +LI+ PR +++ R+ K +L I RP +++ MF + Y+S++ P
Sbjct: 181 ATIDVLKLIKEKQPRFYDYFYQHRRAKDLLPIIEQHFGRPLVHVSGMFGEHNGYLSVVVP 240
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ +HP NKN ++ +L D + L +I+ + E +P+ +IHLN+ P
Sbjct: 241 LTMHPWNKNAVVVVDLRGDLDELLNYSAEEIKAAMYTANEDLGEGRSRVPLKLIHLNKCP 300
Query: 608 IVISNLKVL--SSNLMFRYKFDLNCAFKNIKCASSILNNTYI-----WKKIFLDYKINNS 660
I IS + VL + NL Y DLN A + +I+N + ++IF +
Sbjct: 301 I-ISPVNVLKYTQNL---YGLDLNAALDKV----AIVNGHHAELERKAREIFAPTTAPSY 352
Query: 661 D---LELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARN 717
D L ++ LY+ F D + + +S + L N ++ F++ ++ L+FLYRA+N
Sbjct: 353 DDQPLLSRVESMLYDGFFEFSDKKIMEEIPYLSEEALKNSHYQFKDARIAPLLFLYRAKN 412
Query: 718 FIETLSYKELKRWKKYRISR 737
F +L+ +E + W+ Y +R
Sbjct: 413 FPMSLTSEEYQEWEAYCDAR 432
>gi|456064031|ref|YP_007503001.1| DNA polymerase I [beta proteobacterium CB]
gi|455441328|gb|AGG34266.1| DNA polymerase I [beta proteobacterium CB]
Length = 947
Score = 304 bits (778), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 140/269 (52%), Positives = 198/269 (73%), Gaps = 4/269 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRAF+A+PD+RN P GA+YG + M+R+ +A +IAC+FDAKGK FR+
Sbjct: 14 VDGSSYLYRAFHAMPDLRNGAGDPTGAIYGMVNMMRRARSELKADHIACVFDAKGKTFRD 73
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
+Y YKA R MP +L+ QI IH MVKA+GWP+L++ GVEADDVIGTLA QA T+
Sbjct: 74 EMYSEYKAHRSPMPEDLVKQIEPIHAMVKALGWPVLMVSGVEADDVIGTLACQA-TQAGW 132
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
+ IIST DKD+AQLV++ + LIN N+ D +I++FGV PE+IVDY S+IGD DN+
Sbjct: 133 ETIISTGDKDLAQLVNSSVTLINTMTNEKLDIDGVIAKFGVPPERIVDYLSIIGDAVDNV 192
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV K GPKTA K L ++ L+N++ NA+ +KGV+G+NLR +L WLP+ ++++T+KTDCD
Sbjct: 193 PGVPKAGPKTANKWLAEFGDLDNLMANADQVKGVVGENLRNSLQWLPQARQLITVKTDCD 252
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKY 1045
L+ ++ + + L +P+D LL +LF +Y
Sbjct: 253 LSPHLPGL-DDLHAKPEDAPLLRELFERY 280
>gi|37679656|ref|NP_934265.1| exonuclease I [Vibrio vulnificus YJ016]
gi|37198401|dbj|BAC94236.1| exonuclease I [Vibrio vulnificus YJ016]
Length = 473
Score = 304 bits (778), Expect = 3e-79, Method: Composition-based stats.
Identities = 159/475 (33%), Positives = 261/475 (54%), Gaps = 15/475 (3%)
Query: 307 HNGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRAC 366
+ TF ++DYET+G + +DRP QFA +RTD N I P+++YC+P D+LP P A
Sbjct: 3 QDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVIYCRPPADYLPAPEAA 62
Query: 367 LITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPY 426
LIT ITPQ G+PE +F + I +P T S+GYN+I FDDE+TR+ +RN ++PY
Sbjct: 63 LITGITPQKAQKEGLPEPEFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPY 122
Query: 427 EREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDAL 486
W+N SRWDL++V++A + L P G+ WP G SFKLEHLS N + H AHDA+
Sbjct: 123 SWSWQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFTSFKLEHLSVANGIEHSNAHDAM 182
Query: 487 SDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYIS 546
+DV AT+ +A+ ++ P+LF++ S+R K+ + I P +++ M + Y S
Sbjct: 183 ADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQYTS 242
Query: 547 LMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLN 604
+ P+ HP N N +I +L DP+ D + + + L + + + +P+ ++HLN
Sbjct: 243 WIVPLAWHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLN 302
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLE 663
+ PI ++ K L++ D N+ + I + + +K+ + I +
Sbjct: 303 KCPI-LAPAKTLTAENAANIGIDREQCLANL---ALIRQHPEVREKLVQLFSIEREFEKS 358
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
++D LY+ F S D + I+R P L+ ++ F +K++E L+F YRARN+ TL
Sbjct: 359 HDVDTLLYDGFFSPADKASMDIIRQTDPTHLAALDITFNDKRIEPLLFRYRARNYPWTLD 418
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLL--KKANEHDTKILNALLMY 776
E +RW + F ++ I + L +E+L+ +++E IL ++ Y
Sbjct: 419 ENEQRRWANHCREYFESR------IEEYMLNLENLVHEHESDEKKMAILKSVYRY 467
>gi|153826959|ref|ZP_01979626.1| exodeoxyribonuclease I [Vibrio cholerae MZO-2]
gi|149739207|gb|EDM53479.1| exodeoxyribonuclease I [Vibrio cholerae MZO-2]
Length = 474
Score = 304 bits (778), Expect = 3e-79, Method: Composition-based stats.
Identities = 161/471 (34%), Positives = 266/471 (56%), Gaps = 16/471 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYET+G+N +DRP QFA +RTD+ N I P+++YC+ D+LP P A LIT I
Sbjct: 8 TFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G+ E +F + I P TIS+GYN+I FDDE+TR+ +RN I+PY W+
Sbjct: 68 TPQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
+ SRWDL++V++A + L P GI WP ++G SFKLEHLS N + H AHDA++DV A
Sbjct: 128 HGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+ ++ P+LF++ ++R K+ + I P +++ M + Y S + PI
Sbjct: 188 TIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVPI 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L DP+ L D ++ L + D +P+ ++HLN+ PI
Sbjct: 248 AWHPTNQNAVIVVDLGKDPQPLLELDAETLQTRLYTRYEDLAPDELPVPVKLVHLNKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++ + D ++ I + + +K+ + + E ++D
Sbjct: 308 -LAPAKTLTAENAQKIGIDREQCLAHLNV---IRQHPEVREKLVTVFSQEREFNQESDVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LY F S D + I+R+ +P+ L ++ +K++E L+F YRAR++ TL+ E
Sbjct: 364 SQLYAGFFSPADRAAMEIIRTTAPENLGSLAIRVADKRIEPLLFRYRARHYPHTLTDAEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLL--KKANEHDTKILNALLMY 776
+RW + R Y ++ N+ + L +E+L+ +A+ IL ++ Y
Sbjct: 424 RRWAAH--CRDYFER----NLEGYMLNLENLVHEHQADPKKMAILKSVYHY 468
>gi|262165491|ref|ZP_06033228.1| exodeoxyribonuclease I [Vibrio mimicus VM223]
gi|262025207|gb|EEY43875.1| exodeoxyribonuclease I [Vibrio mimicus VM223]
Length = 474
Score = 304 bits (778), Expect = 3e-79, Method: Composition-based stats.
Identities = 165/471 (35%), Positives = 262/471 (55%), Gaps = 16/471 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYET+G+N +DRP QFA +RTD+ N I P+++YC+ D+LP P A LIT I
Sbjct: 8 TFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G+PE +F + I P T S+GYN+I FDDE+TR+ +RN I+PY W+
Sbjct: 68 TPQKANSLGLPEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
+ SRWDL++VI+A + L P GI WP + G SFKLEHLS N + H AHDA++DV A
Sbjct: 128 HGNSRWDLLDVIRACHALRPEGIEWPENDEGFTSFKLEHLSVANGIEHSNAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+ I+ P+LF++ ++R K+ + I P +++ M + Y S + PI
Sbjct: 188 TIELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERQYTSWIVPI 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L DP+ D ++ L + D +P+ ++HLN+ PI
Sbjct: 248 AWHPTNQNAVIVVDLGKDPQPLFDLDAEALQARLYTRYEDLAPDELPVPVKLVHLNKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++ + D ++ I + I +K+ + E N+D
Sbjct: 308 -LAPAKTLTAENAEKIGIDREQCLAHLNV---IRQHPEIREKLVSVFSQEREFAKENNVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LY F S D + I+R+ SP L ++ +K++E L+F YRAR++ TL+ E
Sbjct: 364 SQLYEGFFSPADRAAMEIIRTTSPDNLGSLEIQVADKRIEPLLFRYRARHYPHTLTDAEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLL--KKANEHDTKILNALLMY 776
+RW + R Y ++ N+ + L +E+L+ + +E IL ++ Y
Sbjct: 424 RRWAAH--CRDYFER----NLESYMLNLENLVHEHQTDEKKMAILKSVYHY 468
>gi|449145183|ref|ZP_21775992.1| Exodeoxyribonuclease I [Vibrio mimicus CAIM 602]
gi|449079219|gb|EMB50144.1| Exodeoxyribonuclease I [Vibrio mimicus CAIM 602]
Length = 474
Score = 304 bits (778), Expect = 3e-79, Method: Composition-based stats.
Identities = 165/471 (35%), Positives = 262/471 (55%), Gaps = 16/471 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYET+G+N +DRP QFA +RTD+ N I P+++YC+ D+LP P A LIT I
Sbjct: 8 TFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G+PE +F + I P T S+GYN+I FDDE+TR+ +RN I+PY W+
Sbjct: 68 TPQKANSLGLPEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
+ SRWDL++VI+A + L P GI WP + G SFKLEHLS N + H AHDA++DV A
Sbjct: 128 HGNSRWDLLDVIRACHALRPEGIEWPENDEGFTSFKLEHLSVANGIEHSNAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+ I+ P+LF++ ++R K+ + I P +++ M + Y S + PI
Sbjct: 188 TIELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERQYTSWIVPI 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L DP+ D ++ L + D +P+ ++HLN+ PI
Sbjct: 248 AWHPTNQNAVIVVDLGKDPQPLFDLDAEALQARLYTRYEDLAPDELPVPVKLVHLNKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++ + D ++ I + I +K+ + E N+D
Sbjct: 308 -LAPAKTLTAENAEKIGIDREQCLAHLNV---IRQHPEIREKLVTVFSQEREFAKENNVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LY F S D + I+R+ SP L ++ +K++E L+F YRAR++ TL+ E
Sbjct: 364 SQLYEGFFSPADRAAMEIIRTTSPDNLGSLEIKVADKRIEPLLFRYRARHYPHTLTDAEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLL--KKANEHDTKILNALLMY 776
+RW + R Y ++ N+ + L +E+L+ + +E IL ++ Y
Sbjct: 424 RRWAAH--CRDYFER----NLESYMLNLENLVHEHQTDEKKMAILKSVYHY 468
>gi|359783060|ref|ZP_09286277.1| exonuclease I [Pseudomonas psychrotolerans L19]
gi|359368948|gb|EHK69522.1| exonuclease I [Pseudomonas psychrotolerans L19]
Length = 481
Score = 304 bits (778), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 148/458 (32%), Positives = 254/458 (55%), Gaps = 13/458 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+ WYD+ET G++ RRDRP Q A +RTD+ LN I+ P+ L+C+ + D LP P ACL+T
Sbjct: 2 TQSIFWYDFETTGIDPRRDRPLQVAGVRTDLDLNEIEAPLNLHCQLSEDVLPHPAACLVT 61
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
I P G+ E F + + +P T SVGYN + FDDE+ R +RN +PY RE
Sbjct: 62 GILPATLQRLGLRERDFVQRLHEELRRPNTCSVGYNNLRFDDEMVRHSLYRNFHDPYARE 121
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+ SRWD++ +++A Y P + WP ++ + S +L+ L+ N + H +AHDAL+DV
Sbjct: 122 WQQGNSRWDVLGLVRALYAFRPESLDWP-QDEQRVSLRLDRLTVANGIEHAQAHDALADV 180
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
RATL LARL+R PRL++++ + R+KK LA I + P +++ FS++ +++ +
Sbjct: 181 RATLALARLVRQRQPRLYDYLWTQRQKKAALARIR--LLEPLLHVSGRFSAERHFLAPVL 238
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
P+ HP+N+N LI +L P+ L D+ +R+ L ++++ E +P+ ++ +N+
Sbjct: 239 PLAWHPVNRNALIVCDLGLAPEPLLDLDVETLRERLYTRRDALAEGDLPVPLKLVQINKC 298
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL---E 663
PI ++ VL R +FDL ++ ++ +L+ W+ S L E
Sbjct: 299 PI-LAPFSVLRPADTERLQFDLAAVWRRVR---QLLDQRATWQPKVQALYAEASGLAAQE 354
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
+ LY+ FI+ ++ + ++L + + F +++ EL F YRARNF E L+
Sbjct: 355 QEAEARLYDGFIAAEERQLCDQVHQCPAEQLGSRAWPFRDERHPELFFRYRARNFPELLT 414
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKK 761
+E RW+++ R ++ + +L + L++
Sbjct: 415 AEEEARWRQFCRQRLLGEEQQGHMTCTQFLTLTEQLRR 452
>gi|229521349|ref|ZP_04410768.1| exodeoxyribonuclease I [Vibrio cholerae TM 11079-80]
gi|229341447|gb|EEO06450.1| exodeoxyribonuclease I [Vibrio cholerae TM 11079-80]
Length = 478
Score = 304 bits (778), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 160/479 (33%), Positives = 266/479 (55%), Gaps = 14/479 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
TF ++DYET+G+N +DRP QFA +RTD+ N I P+++YC+ D+LP P A LIT
Sbjct: 10 QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 69
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ + G+ E +F + I P T S+GYN+I FDDE+TR+ +RN I+PY
Sbjct: 70 GITPQKANSQGLAEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 129
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W++ SRWDL++V++A + L P GI WP ++G SFKLEHLS N + H AHDA++DV
Sbjct: 130 WQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADV 189
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ LA+ ++ P+LF++ ++R K+ + I P +++ M + Y S +
Sbjct: 190 IATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIV 249
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
PI HP N+N +I +L DP+ L D ++ L + D +P+ ++HLN+
Sbjct: 250 PIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKC 309
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELN 665
PI ++ K L++ + D ++ I + I +K+ + + E +
Sbjct: 310 PI-LAPAKTLTAENAQKIGIDREQCLAHLNV---IRQHPEIREKLVTVFSQEREFNQESD 365
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LY F S D + I+R+ +P+ L ++ +K++E L+F YRAR++ TL+
Sbjct: 366 VDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDA 425
Query: 726 ELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGKIDGSSC 784
E +RW + R Y ++ N+ + L +E+L+ + K+ +Y ++ +C
Sbjct: 426 EQRRWAAH--CRDYFER----NLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC 478
>gi|421484077|ref|ZP_15931649.1| DNA polymerase I [Achromobacter piechaudii HLE]
gi|400197784|gb|EJO30748.1| DNA polymerase I [Achromobacter piechaudii HLE]
Length = 905
Score = 304 bits (778), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 137/270 (50%), Positives = 196/270 (72%), Gaps = 4/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRAF+A+PD+RN P GALYG + MLRKL +++A Y ACIFDA+GK FR+
Sbjct: 8 VDGSSYLYRAFHAMPDLRNAQGEPTGALYGVVNMLRKLVSDHKAEYAACIFDARGKTFRD 67
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LYP YK+ R MP +L QI IH+ V+A+GWP+L I+GVEADDVIGTLAK+A +H++
Sbjct: 68 DLYPEYKSHRPPMPEDLAEQIEPIHRAVRALGWPVLAIEGVEADDVIGTLAKRA-AEHDV 126
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
I+ST DKD+AQLV++ + L+N ++ D +I++FGV P++IVDY L+GD DN+
Sbjct: 127 HTIVSTGDKDLAQLVNSHVTLVNTMTGEVLDEPGVINKFGVPPDRIVDYLMLVGDTVDNV 186
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV K+GPKTAVK L ++ S++ ++ A+ IKGV G NLR A+ P +++LT+K DCD
Sbjct: 187 PGVTKVGPKTAVKWLTEFGSIDKLVEGADGIKGVAGSNLREAIPNFPLTRQLLTVKYDCD 246
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
LT ++ S+ + L + +DE L +L+ +Y
Sbjct: 247 LTGHVESV-DDLTPRERDEATLTELYERYG 275
>gi|419829806|ref|ZP_14353292.1| exonuclease family protein [Vibrio cholerae HC-1A2]
gi|419832779|ref|ZP_14356241.1| exonuclease family protein [Vibrio cholerae HC-61A2]
gi|422916993|ref|ZP_16951321.1| exodeoxyribonuclease I [Vibrio cholerae HC-02A1]
gi|423819663|ref|ZP_17715921.1| exonuclease family protein [Vibrio cholerae HC-55C2]
gi|423852996|ref|ZP_17719714.1| exonuclease family protein [Vibrio cholerae HC-59A1]
gi|423880420|ref|ZP_17723316.1| exonuclease family protein [Vibrio cholerae HC-60A1]
gi|423997408|ref|ZP_17740667.1| exodeoxyribonuclease I [Vibrio cholerae HC-02C1]
gi|424016117|ref|ZP_17755958.1| exodeoxyribonuclease I [Vibrio cholerae HC-55B2]
gi|424019053|ref|ZP_17758849.1| exodeoxyribonuclease I [Vibrio cholerae HC-59B1]
gi|424624598|ref|ZP_18063070.1| exodeoxyribonuclease I [Vibrio cholerae HC-50A1]
gi|424629097|ref|ZP_18067394.1| exodeoxyribonuclease I [Vibrio cholerae HC-51A1]
gi|424633129|ref|ZP_18071239.1| exodeoxyribonuclease I [Vibrio cholerae HC-52A1]
gi|424636218|ref|ZP_18074233.1| exodeoxyribonuclease I [Vibrio cholerae HC-55A1]
gi|424640157|ref|ZP_18078047.1| exodeoxyribonuclease I [Vibrio cholerae HC-56A1]
gi|424648192|ref|ZP_18085862.1| exodeoxyribonuclease I [Vibrio cholerae HC-57A1]
gi|443527015|ref|ZP_21093081.1| exodeoxyribonuclease I [Vibrio cholerae HC-78A1]
gi|341638386|gb|EGS63033.1| exodeoxyribonuclease I [Vibrio cholerae HC-02A1]
gi|408014305|gb|EKG51959.1| exodeoxyribonuclease I [Vibrio cholerae HC-50A1]
gi|408019944|gb|EKG57313.1| exodeoxyribonuclease I [Vibrio cholerae HC-52A1]
gi|408025029|gb|EKG62099.1| exodeoxyribonuclease I [Vibrio cholerae HC-56A1]
gi|408025758|gb|EKG62804.1| exodeoxyribonuclease I [Vibrio cholerae HC-55A1]
gi|408034762|gb|EKG71247.1| exodeoxyribonuclease I [Vibrio cholerae HC-57A1]
gi|408057493|gb|EKG92339.1| exodeoxyribonuclease I [Vibrio cholerae HC-51A1]
gi|408621391|gb|EKK94394.1| exonuclease family protein [Vibrio cholerae HC-1A2]
gi|408635947|gb|EKL08123.1| exonuclease family protein [Vibrio cholerae HC-55C2]
gi|408642757|gb|EKL14501.1| exonuclease family protein [Vibrio cholerae HC-60A1]
gi|408643266|gb|EKL14996.1| exonuclease family protein [Vibrio cholerae HC-59A1]
gi|408651423|gb|EKL22679.1| exonuclease family protein [Vibrio cholerae HC-61A2]
gi|408853504|gb|EKL93294.1| exodeoxyribonuclease I [Vibrio cholerae HC-02C1]
gi|408861189|gb|EKM00788.1| exodeoxyribonuclease I [Vibrio cholerae HC-55B2]
gi|408868767|gb|EKM08081.1| exodeoxyribonuclease I [Vibrio cholerae HC-59B1]
gi|443454591|gb|ELT18392.1| exodeoxyribonuclease I [Vibrio cholerae HC-78A1]
Length = 474
Score = 304 bits (778), Expect = 3e-79, Method: Composition-based stats.
Identities = 162/471 (34%), Positives = 266/471 (56%), Gaps = 16/471 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYET+G+N +DRP QFA +RTD+ N I P+++YC+ D+LP P A LIT I
Sbjct: 8 TFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G+ E +F + I P TIS+GYN+I FDDE+TR+ +RN I+PY W+
Sbjct: 68 TPQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
+ SRWDL++V++A + L P GI WP ++G SFKLEHLS N + H AHDA++DV A
Sbjct: 128 HGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+ ++ P+LF++ ++R K+ + I P +++ M + Y S + PI
Sbjct: 188 TIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVPI 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L DP+ L D ++ L + D +P+ ++HLN+ PI
Sbjct: 248 AWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++ + D ++ I + I +K+ + + E ++D
Sbjct: 308 -LAPAKTLTAENAQKIGIDREQCLAHLNV---IRQHPEIREKLVTVFSQEPEFNQESDVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LY F S D + I+R+ +P+ L ++ +K++E L+F YRAR++ TL+ E
Sbjct: 364 SQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLL--KKANEHDTKILNALLMY 776
+RW + R Y ++ N+ + L +E+L+ +A+ IL ++ Y
Sbjct: 424 RRWAAH--CRDYFER----NLEGYMLNLENLVHEHQADPKKMAILKSVYHY 468
>gi|360035134|ref|YP_004936897.1| exonuclease I [Vibrio cholerae O1 str. 2010EL-1786]
gi|356646288|gb|AET26343.1| exonuclease I [Vibrio cholerae O1 str. 2010EL-1786]
Length = 494
Score = 303 bits (777), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 160/479 (33%), Positives = 267/479 (55%), Gaps = 14/479 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
TF ++DYET+G+N +DRP QFA +RTD+ N I P+++YC+ D+LP P A LIT
Sbjct: 26 QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 85
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ + G+ E +F + I P TI++GYN+I FDDE+TR+ +RN I+PY
Sbjct: 86 GITPQKANSQGLAEPEFIARIHAELSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWS 145
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W++ SRWDL++V++A + L P GI WP ++G SFKLEHLS N + H AHDA++DV
Sbjct: 146 WQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADV 205
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ LA+ ++ P+LF++ ++R K+ + I P +++ M + Y S +
Sbjct: 206 IATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIV 265
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
PI HP N+N +I +L DP+ L D ++ L + D +P+ ++HLN+
Sbjct: 266 PIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKC 325
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELN 665
PI ++ K L++ + D ++ I + I +K+ + + E +
Sbjct: 326 PI-LAPAKTLTAENAQKIGIDREQCLAHLNV---IRQHPEIREKLVTVFSQEREFNQESD 381
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LY F S D + I+R+ +P+ L ++ +K++E L+F YRAR++ TL+
Sbjct: 382 VDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIRVADKRIEPLLFRYRARHYPHTLTDT 441
Query: 726 ELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGKIDGSSC 784
E +RW + R Y ++ N+ + L +E+L+ + K+ +Y ++ +C
Sbjct: 442 EQRRWAAH--CRDYFER----NLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC 494
>gi|359798525|ref|ZP_09301096.1| DNA polymerase I [Achromobacter arsenitoxydans SY8]
gi|359363347|gb|EHK65073.1| DNA polymerase I [Achromobacter arsenitoxydans SY8]
Length = 905
Score = 303 bits (777), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 134/270 (49%), Positives = 196/270 (72%), Gaps = 4/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRAF+A+PD+RN P GALYG + MLRKL +++A Y ACIFDA+GK FR+
Sbjct: 8 VDGSSYLYRAFHAMPDLRNAQGEPTGALYGVVNMLRKLVSDHKAEYAACIFDARGKTFRD 67
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LYP YK+ R MP +L QI IH+ V+A+GWP+L I+GVEADDVIGTLA++A +H++
Sbjct: 68 DLYPEYKSHRPPMPEDLAAQIEPIHRAVRALGWPVLAIEGVEADDVIGTLAQRA-AQHDV 126
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
I+ST DKD+AQLV++ + L+N + ++ D ++++FGV P++IVDY L+GD DN+
Sbjct: 127 HTIVSTGDKDLAQLVNSHVTLVNTMSGEVLDEPGVVNKFGVPPDRIVDYLMLVGDTVDNV 186
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV K+GPKTA K + ++ S++ +I A+ IKGV G NLR A+ P +++LT+K DCD
Sbjct: 187 PGVTKVGPKTAAKWITEFGSIDKLIEGADGIKGVAGNNLREAIPNFPLTRQLLTVKCDCD 246
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
LT ++ + E L +P+D+ L +L+ +Y
Sbjct: 247 LTGHVDGV-EDLTPRPRDDATLTELYERYG 275
>gi|421351002|ref|ZP_15801367.1| exodeoxyribonuclease I [Vibrio cholerae HE-25]
gi|395951447|gb|EJH62061.1| exodeoxyribonuclease I [Vibrio cholerae HE-25]
Length = 474
Score = 303 bits (776), Expect = 4e-79, Method: Composition-based stats.
Identities = 161/471 (34%), Positives = 265/471 (56%), Gaps = 16/471 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYET+G+N +DRP QFA +RTD+ N I P+++YC+ D+LP P A LIT I
Sbjct: 8 TFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G+ E +F + I P T S+GYN+I FDDE+TR+ +RN I+PY W+
Sbjct: 68 TPQKANSQGLAEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
+ SRWDL++V++A + L P GI WP ++G SFKLEHLS N + H AHDA++DV A
Sbjct: 128 HGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+ ++ P+LF++ ++R K+ + I P +++ M + Y S + PI
Sbjct: 188 TIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVPI 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L DPK L D ++ L + D +P+ ++HLN+ PI
Sbjct: 248 AWHPTNQNAVIVVDLGKDPKPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++ + D ++ I + + +K+ + + E ++D
Sbjct: 308 -LAPAKTLTAENAQKIGIDREQCLAHLNV---IRQHPEVREKLVTVFSQEREFNQESDVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LY F S D + I+R+ +P+ L ++ +K++E L+F YRAR++ TL+ E
Sbjct: 364 SQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLL--KKANEHDTKILNALLMY 776
+RW + R Y ++ N+ + L +E+L+ +A+ IL ++ Y
Sbjct: 424 RRWAAH--CRDYFER----NLEGYMLNLENLVHEHQADPKKMAILKSVYHY 468
>gi|413965133|ref|ZP_11404359.1| DNA polymerase I [Burkholderia sp. SJ98]
gi|413927807|gb|EKS67096.1| DNA polymerase I [Burkholderia sp. SJ98]
Length = 912
Score = 303 bits (776), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 142/270 (52%), Positives = 193/270 (71%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R D P GALYG I MLR+L + A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPDGGPTGALYGMINMLRRLRREINAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
Y YKA R MP +L QI IH V+A+GWP+++I+ VEADDVIGTLA +A K +
Sbjct: 75 DWYADYKANRPSMPEDLAKQIEPIHVAVRALGWPLVMIERVEADDVIGTLAVEA-EKRGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
KVI+ST DKD+AQLV++ + LIN N+ DR ++++FGV PE+IVDY SLIGD DN+
Sbjct: 134 KVIVSTGDKDLAQLVTDHVTLINTMTNETLDRAGVLTKFGVPPERIVDYLSLIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTA+K L QY +L+ I+ +AN IKG +G NLR AL++LP +K++T+ T+CD
Sbjct: 194 PGVEKCGPKTAIKWLTQYETLDGIVEHANEIKGAVGDNLRKALDFLPMARKLVTVHTECD 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
LT I SI +L +P+ L +F ++
Sbjct: 254 LTSQIESIDATLQSRPESRDELRDVFLRHG 283
>gi|188992104|ref|YP_001904114.1| exonuclease I [Xanthomonas campestris pv. campestris str. B100]
gi|167733864|emb|CAP52070.1| Exodeoxyribonuclease I [Xanthomonas campestris pv. campestris]
Length = 481
Score = 303 bits (776), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 164/475 (34%), Positives = 259/475 (54%), Gaps = 13/475 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+FL+YD ETFG + RR R QFAA+RTD L I+ PI + +PA D LP P A ++T I
Sbjct: 4 SFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTGI 63
Query: 372 TPQFCLNNGIPEYK-FASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
TPQ L G+ E + FA I E++ +P T ++GYN+I FDDE R +RN +PYEREW
Sbjct: 64 TPQHALREGVNEAEAFARIAEQMG-RPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYEREW 122
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDL++V++ + L P GI WP + +G SFKLEHL+ N + AH+ALSDV
Sbjct: 123 RGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANAVREGDAHEALSDVY 182
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+G+AR + + P+L+++ L LR K++ + + +P +I+ + + + + P
Sbjct: 183 ATIGMARKFQQSQPKLWDYALRLRDKRFAASLLDVIAMQPVLHISQRYPATRLCAAAVLP 242
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP + +I ++L DP L ++I D L + E IP+ +HLN++P
Sbjct: 243 LTRHPRIDSRVIVFDLDGDPDALLRLSPDEIADRLYIRAADLPEGEQRIPLKEVHLNKAP 302
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL--N 665
+++ + S +L + ++ A K A + +K+ Y + +
Sbjct: 303 ALVAWQHLRSDDLQ---RLGVDRAAVEAKAARLRELGPELAEKVRQVYGAERAGAAAVND 359
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
D LY+ F+++ D L +RS +P +L + F + +L EL+F YRARN+ +TLS
Sbjct: 360 ADASLYDGFLAEGDKRLLTQVRSSAPAELGALEARFRDPRLIELLFRYRARNWPQTLSPD 419
Query: 726 ELKRWKKYRISRFYNKKN-NLYNINMFYLEIESLLKKANEHDTK--ILNALLMYG 777
E +RW YR R + + FY +I L + TK +L+ L +G
Sbjct: 420 EHQRWNAYRRQRLLEDRGLGEVTLEQFYAQIADLRLAHPDDATKQSLLDQLAAWG 474
>gi|229505177|ref|ZP_04394687.1| exodeoxyribonuclease I [Vibrio cholerae BX 330286]
gi|229511152|ref|ZP_04400631.1| exodeoxyribonuclease I [Vibrio cholerae B33]
gi|229518270|ref|ZP_04407714.1| exodeoxyribonuclease I [Vibrio cholerae RC9]
gi|229608197|ref|YP_002878845.1| exonuclease I [Vibrio cholerae MJ-1236]
gi|229344985|gb|EEO09959.1| exodeoxyribonuclease I [Vibrio cholerae RC9]
gi|229351117|gb|EEO16058.1| exodeoxyribonuclease I [Vibrio cholerae B33]
gi|229357400|gb|EEO22317.1| exodeoxyribonuclease I [Vibrio cholerae BX 330286]
gi|229370852|gb|ACQ61275.1| exodeoxyribonuclease I [Vibrio cholerae MJ-1236]
Length = 478
Score = 303 bits (776), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 160/479 (33%), Positives = 267/479 (55%), Gaps = 14/479 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
TF ++DYET+G+N +DRP QFA +RTD+ N I P+++YC+ D+LP P A LIT
Sbjct: 10 QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 69
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ + G+ E +F + I P TI++GYN+I FDDE+TR+ +RN I+PY
Sbjct: 70 GITPQKANSQGLAEPEFIARIHAELSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWS 129
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W++ SRWDL++V++A + L P GI WP ++G SFKLEHLS N + H AHDA++DV
Sbjct: 130 WQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADV 189
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ LA+ ++ P+LF++ ++R K+ + I P +++ M + Y S +
Sbjct: 190 IATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIV 249
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
PI HP N+N +I +L DP+ L D ++ L + D +P+ ++HLN+
Sbjct: 250 PIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKC 309
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELN 665
PI ++ K L++ + D ++ I + I +K+ + + E +
Sbjct: 310 PI-LAPAKTLTAENAQKIGIDREQCLAHLNV---IRQHPEIREKLVTVFSQEREFNQESD 365
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LY F S D + I+R+ +P+ L ++ +K++E L+F YRAR++ TL+
Sbjct: 366 VDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIRVADKRIEPLLFRYRARHYPHTLTDT 425
Query: 726 ELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGKIDGSSC 784
E +RW + R Y ++ N+ + L +E+L+ + K+ +Y ++ +C
Sbjct: 426 EQRRWAAH--CRDYFER----NLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC 478
>gi|297578829|ref|ZP_06940757.1| exodeoxyribonuclease I [Vibrio cholerae RC385]
gi|297536423|gb|EFH75256.1| exodeoxyribonuclease I [Vibrio cholerae RC385]
Length = 474
Score = 303 bits (776), Expect = 5e-79, Method: Composition-based stats.
Identities = 160/471 (33%), Positives = 265/471 (56%), Gaps = 16/471 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYET+G+N +DRP QFA +RTD+ N I P+++YC+ D+LP P A LIT I
Sbjct: 8 TFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G+ E +F + I P T S+GYN+I FDDE+TR+ +RN I+PY W+
Sbjct: 68 TPQKANSQGLAEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
+ SRWDL++V++A + L P GI WP ++G SFKLEHLS N + H AHDA++DV A
Sbjct: 128 HGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+ ++ P+LF++ ++R K+ + I P +++ M + Y S + PI
Sbjct: 188 TIELAKKVKAAQPKLFDYFFTMRHKRKLTGLIDIVNQTPLMHVSGMLGRERHYTSWIVPI 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L DP+ L D ++ L + D +P+ ++HLN+ PI
Sbjct: 248 AWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++ + D ++ I + + +K+ + + E ++D
Sbjct: 308 -LAPAKTLTAENAQKIGIDREQCLAHLNV---IRQHPEVREKLVTVFSQEREFNQESDVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LY F S D + I+R+ +P+ L ++ +K++E L+F YRAR++ TL+ E
Sbjct: 364 SQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLL--KKANEHDTKILNALLMY 776
+RW + R Y ++ N+ + L +E+L+ +A+ IL ++ Y
Sbjct: 424 RRWAAH--CRDYFER----NLEGYMLNLENLVHEHQADPKKMAILKSVYHY 468
>gi|229525835|ref|ZP_04415240.1| exodeoxyribonuclease I [Vibrio cholerae bv. albensis VL426]
gi|229339416|gb|EEO04433.1| exodeoxyribonuclease I [Vibrio cholerae bv. albensis VL426]
Length = 478
Score = 303 bits (775), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 159/479 (33%), Positives = 266/479 (55%), Gaps = 14/479 (2%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
TF ++DYET+G+N +DRP QFA +RTD+ N I P+++YC+ D+LP P A LIT
Sbjct: 10 QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 69
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ + G+ E +F + I P T S+GYN+I FDDE+TR+ +RN I+PY
Sbjct: 70 GITPQKANSQGLAEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 129
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W++ SRWDL++V++A + L P GI WP ++G SFKLEHLS N + H AHDA++DV
Sbjct: 130 WQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADV 189
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ LA+ ++ P+LF++ ++R K+ + I P +++ M + Y S +
Sbjct: 190 IATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERQYTSWIV 249
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
PI HP N+N +I +L DP+ + D ++ L + D +P+ ++HLN+
Sbjct: 250 PIAWHPTNQNAVIVVDLGKDPQPLMDLDAETLQARLYTRYEDLAPDELPVPVKLVHLNKC 309
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELN 665
PI ++ K L++ + D ++ I + I +K+ + + E +
Sbjct: 310 PI-LAPAKTLTAENAQKIGIDREQCLAHLNV---IRQHPEIREKLVTVFSQEREFNQESD 365
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D +LY F S D + I+R+ +P+ L ++ +K++E L+F YRAR++ TL+
Sbjct: 366 VDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDA 425
Query: 726 ELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGKIDGSSC 784
E +RW + R Y ++ N+ + L +E+L+ + K+ +Y ++ +C
Sbjct: 426 EQRRWAAH--CRDYFER----NLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC 478
>gi|417824300|ref|ZP_12470891.1| exodeoxyribonuclease I [Vibrio cholerae HE48]
gi|419836088|ref|ZP_14359531.1| exodeoxyribonuclease I [Vibrio cholerae HC-46B1]
gi|421342901|ref|ZP_15793306.1| exodeoxyribonuclease I [Vibrio cholerae HC-43B1]
gi|421354003|ref|ZP_15804335.1| exodeoxyribonuclease I [Vibrio cholerae HE-45]
gi|422306834|ref|ZP_16394005.1| exonuclease family protein [Vibrio cholerae CP1035(8)]
gi|423734635|ref|ZP_17707847.1| exonuclease family protein [Vibrio cholerae HC-41B1]
gi|424008919|ref|ZP_17751866.1| exodeoxyribonuclease I [Vibrio cholerae HC-44C1]
gi|340047985|gb|EGR08908.1| exodeoxyribonuclease I [Vibrio cholerae HE48]
gi|395943418|gb|EJH54093.1| exodeoxyribonuclease I [Vibrio cholerae HC-43B1]
gi|395953128|gb|EJH63741.1| exodeoxyribonuclease I [Vibrio cholerae HE-45]
gi|408625182|gb|EKK98099.1| exonuclease family protein [Vibrio cholerae CP1035(8)]
gi|408630936|gb|EKL03508.1| exonuclease family protein [Vibrio cholerae HC-41B1]
gi|408857953|gb|EKL97632.1| exodeoxyribonuclease I [Vibrio cholerae HC-46B1]
gi|408865070|gb|EKM04482.1| exodeoxyribonuclease I [Vibrio cholerae HC-44C1]
Length = 474
Score = 303 bits (775), Expect = 6e-79, Method: Composition-based stats.
Identities = 161/471 (34%), Positives = 265/471 (56%), Gaps = 16/471 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYET+G+N +DRP QFA +RTD+ N I P+++YC+ D+LP P A LIT I
Sbjct: 8 TFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G+ E +F + I P T S+GYN+I FDDE+TR+ +RN I+PY W+
Sbjct: 68 TPQKANSQGLAEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
+ SRWDL++V++A + L P GI WP ++G SFKLEHLS N + H AHDA++DV A
Sbjct: 128 HGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+ ++ P+LF++ ++R K+ + I P +++ M + Y S + PI
Sbjct: 188 TIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVPI 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L DP+ L D ++ L + D +P+ ++HLN+ PI
Sbjct: 248 AWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++ + D ++ I + I +K+ + + E ++D
Sbjct: 308 -LAPAKTLTAENAQKIGIDREQCLAHLNV---IRQHPEIREKLVTVFSQEREFNQESDVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LY F S D + I+R+ +P+ L ++ +K++E L+F YRAR++ TL+ E
Sbjct: 364 SQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLL--KKANEHDTKILNALLMY 776
+RW + R Y ++ N+ + L +E+L+ +A+ IL ++ Y
Sbjct: 424 RRWAAH--CRDYFER----NLEGYMLNLENLVHEHQADPKKMAILKSVYHY 468
>gi|258624410|ref|ZP_05719357.1| exodeoxyribonuclease I [Vibrio mimicus VM603]
gi|258583257|gb|EEW08059.1| exodeoxyribonuclease I [Vibrio mimicus VM603]
Length = 474
Score = 303 bits (775), Expect = 6e-79, Method: Composition-based stats.
Identities = 164/471 (34%), Positives = 263/471 (55%), Gaps = 16/471 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYET+G+N +DRP QFA +RTD+ N I P+++YC+ D+LP P A LIT I
Sbjct: 8 TFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G+PE +F + I P T S+GYN+I FDDE+TR+ +RN I+PY W+
Sbjct: 68 TPQKANSLGLPEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
+ SRWDL++VI+A + L P GI WP + G SFKLEHLS N + H AH+A++DV A
Sbjct: 128 HGNSRWDLLDVIRACHALRPEGIEWPENDEGFTSFKLEHLSVANGIEHSNAHNAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+ I+ P+LF++ ++R K+ + I P +++ M + Y S + PI
Sbjct: 188 TIELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERQYTSWIVPI 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L DP+ D ++ L + D +P+ ++HLN+ PI
Sbjct: 248 AWHPTNQNAVIVVDLGKDPQPLFDLDAEALQARLYTRYEDLAPDELPVPVKLVHLNKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++ + D ++ I + I +K+ + E N+D
Sbjct: 308 -LAPAKTLTAENAEKIGIDREQCLAHLNV---IRQHPEIREKLVTVFSQEREFAKENNVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LY F S D + I+R+ SP L +++ +K++E L+F YRAR++ TL+ E
Sbjct: 364 SQLYEGFFSPADRAAMEIIRTTSPDNLGSLDIQVADKRIEPLLFRYRARHYPHTLTDAEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLL--KKANEHDTKILNALLMY 776
+RW + R Y ++ N+ + L +E+L+ + +E IL ++ Y
Sbjct: 424 RRWAAH--CRDYFER----NLESYMLNLENLVHEHQTDEKKMAILKSVYHY 468
>gi|320156592|ref|YP_004188971.1| exodeoxyribonuclease I [Vibrio vulnificus MO6-24/O]
gi|319931904|gb|ADV86768.1| exodeoxyribonuclease I [Vibrio vulnificus MO6-24/O]
Length = 473
Score = 303 bits (775), Expect = 7e-79, Method: Composition-based stats.
Identities = 158/475 (33%), Positives = 261/475 (54%), Gaps = 15/475 (3%)
Query: 307 HNGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRAC 366
+ +F ++DYET+G + +DRP QFA +RTD N I P+++YC+P D+LP P A
Sbjct: 3 QDNQPSFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVIYCRPPADYLPAPEAA 62
Query: 367 LITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPY 426
LIT ITPQ G+PE +F + I +P T S+GYN+I FDDE+TR+ +RN ++PY
Sbjct: 63 LITGITPQKAQKEGLPEPEFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPY 122
Query: 427 EREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDAL 486
W+N SRWDL++V++A + L P G+ WP G SFKLEHLS N + H AHDA+
Sbjct: 123 SWSWQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFTSFKLEHLSVANGIEHSNAHDAM 182
Query: 487 SDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYIS 546
+DV AT+ +A+ ++ P+LF++ S+R K+ + I P +++ M + Y S
Sbjct: 183 ADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQYTS 242
Query: 547 LMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLN 604
+ P+ HP N N +I +L DP+ D + + + L + + + +P+ ++HLN
Sbjct: 243 WIVPLAWHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLN 302
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLE 663
+ PI ++ K L++ D N+ + I + + +K+ + I +
Sbjct: 303 KCPI-LAPAKTLTAENAANIGIDREQCLANL---ALIRQHPEVREKLVQLFSIEREFEKS 358
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
++D LY+ F S D + I+R P L+ ++ F +K++E L+F YRARN+ TL
Sbjct: 359 HDVDTLLYDGFFSPADKASMDIIRQTDPTHLAALDITFNDKRIEPLLFRYRARNYPWTLD 418
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLL--KKANEHDTKILNALLMY 776
E +RW + F ++ I + L +E+L+ +++E IL ++ Y
Sbjct: 419 ENEQRRWANHCREYFESR------IEEYMLNLENLVHEHESDEKKMAILKSVYRY 467
>gi|344208018|ref|YP_004793159.1| exodeoxyribonuclease I [Stenotrophomonas maltophilia JV3]
gi|343779380|gb|AEM51933.1| Exodeoxyribonuclease I [Stenotrophomonas maltophilia JV3]
Length = 479
Score = 303 bits (775), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 154/429 (35%), Positives = 242/429 (56%), Gaps = 6/429 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+FL+YD ETFG + RR R Q+AAIRTD LN ID P+ + +PA D LP P A L+T I
Sbjct: 4 SFLFYDLETFGQDPRRTRISQYAAIRTDADLNEIDTPVSFFVRPADDLLPSPMATLVTGI 63
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L GI E + I + +PGT ++GYNT+ FDDE R+ +RN +PYEREW+
Sbjct: 64 TPQQALAEGISEAEAFDRINEQLSRPGTCALGYNTLRFDDEFVRYGLFRNFHDPYEREWR 123
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++ + P GI WP + +G SFKLEHL+ NN+ AH+ALSDVRA
Sbjct: 124 NGNSRWDLLDMLRLMRAMRPDGIQWPLREDGATSFKLEHLAEANNVREGDAHEALSDVRA 183
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+G+ARL + + PRL+++ L LR K++V + + +P +I+ + + + + P+
Sbjct: 184 TIGMARLFKQSQPRLWDYALKLRDKRFVGSLLDVAAMKPVLHISMRYPASRLCAAPVLPL 243
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
+HP N +I ++L + L I L + + E +P+ +HLN+ P
Sbjct: 244 AVHPTINNRVIVFDLEGEIDDLLELPAEVIAQRLYMRASELPEGVARVPLKEVHLNKVPA 303
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
+I+ + + + + L+ A K + +K Y + ++D
Sbjct: 304 LIAWNHLRADD---HARLGLDVAAIEAKVERLRAFAPQLAEKARQVYNQPRAATVADVDA 360
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
LY+ F+ D LA+ R+ +P++L+ + F + +L EL+F YRARN ++L+ E +
Sbjct: 361 SLYDGFLGNGDKPLLALARTTAPEQLAALEGRFRDPRLPELLFRYRARNHPDSLAPAERQ 420
Query: 729 RWKKYRISR 737
RW+ YR R
Sbjct: 421 RWQDYRRQR 429
>gi|336451304|ref|ZP_08621742.1| exonuclease I [Idiomarina sp. A28L]
gi|336281675|gb|EGN74947.1| exonuclease I [Idiomarina sp. A28L]
Length = 482
Score = 302 bits (774), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 167/481 (34%), Positives = 260/481 (54%), Gaps = 19/481 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
N T W+DYE G+N R DRP QFA +RTD LN I P+ +YC+ +PD+LP P ACLIT
Sbjct: 3 NPTIYWHDYEAGGINPRADRPMQFAGVRTDRELNIIGKPLEIYCRLSPDYLPHPEACLIT 62
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ G+PE +FA I + F + T VGYN I +DDE+TRF+F+RN I+PY
Sbjct: 63 GITPQAANQRGLPECEFARRIHQEFSQHQTTVVGYNNIRYDDEMTRFLFYRNFIDPYAYS 122
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W+N+ SRWDL+ +++A Y L P GI WP G S KL+ L+ N + H AHDA++DV
Sbjct: 123 WENDNSRWDLLTLVRATYALRPEGIEWPTNEEGNVSLKLDQLAPANGIEHTNAHDAMADV 182
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYV--LAEIGWPIARPFFYITHMFSSKHSYISL 547
A++ LA+ I + P+L+N+ +R+KK + L E Y++ F ++ Y+
Sbjct: 183 HASIELAKKIMHAQPKLYNYSFDIRRKKKLIDLVESALLNQSMLVYVSGFFGAESRYVQW 242
Query: 548 MWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDIP-ISMIHLNRS 606
++PI HP N+N LI W L +P+ + +I L + + + P + I LN+
Sbjct: 243 VFPIAFHPENQNQLIAWRLDANPEFWRDKSAAEINAQLFASREELQGERPGLITITLNQC 302
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFL-------DYKINN 659
P + K L+ D+ ++ ++L N + L D + N
Sbjct: 303 PFLAPE-KTLAEAQAQNAGIDIAA----VETNRALLANDSTLRDHLLAAILDKDDRLVAN 357
Query: 660 SDLE-LNIDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARN 717
D E + D LY+ F S + + +++ SP++L+ + ++ +L L+F +RARN
Sbjct: 358 EDPERADADLALYSGGFFSAQAKTHMNMIQQASPEQLAGIELPLDDPRLPVLLFRFRARN 417
Query: 718 FIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK--ILNALLM 775
F TLS E +RWK++ +R + + + F L++E L ++ + K IL +L
Sbjct: 418 FPHTLSASEAERWKQHCQNRLVHGGEAFLSSDEFVLKLEQLAEQHQQDPRKMAILKSLAD 477
Query: 776 Y 776
Y
Sbjct: 478 Y 478
>gi|153829736|ref|ZP_01982403.1| exodeoxyribonuclease I [Vibrio cholerae 623-39]
gi|262191424|ref|ZP_06049612.1| exodeoxyribonuclease I [Vibrio cholerae CT 5369-93]
gi|148874770|gb|EDL72905.1| exodeoxyribonuclease I [Vibrio cholerae 623-39]
gi|262032713|gb|EEY51263.1| exodeoxyribonuclease I [Vibrio cholerae CT 5369-93]
Length = 474
Score = 302 bits (774), Expect = 8e-79, Method: Composition-based stats.
Identities = 160/471 (33%), Positives = 265/471 (56%), Gaps = 16/471 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYET+G+N +DRP QFA +RTD+ N I P+++YC+ D+LP P A LIT I
Sbjct: 8 TFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G+ E +F + I P T S+GYN+I FDDE+TR+ +RN I+PY W+
Sbjct: 68 TPQKANSQGLAEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
+ SRWDL++V++A + L P GI WP ++G SFKLEHLS N + H AHDA++DV A
Sbjct: 128 HGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+ ++ P+LF++ ++R K+ + I P +++ M + Y S + PI
Sbjct: 188 TIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVPI 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L DP+ L D ++ L + D +P+ ++HLN+ PI
Sbjct: 248 AWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++ + D ++ I + + +K+ + + E ++D
Sbjct: 308 -LAPAKTLTAENAQKIGIDREQCLAHLNV---IRQHPEVREKLVTVFSQEREFNQESDVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LY F S D + I+R+ +P+ L ++ +K++E L+F YRAR++ TL+ E
Sbjct: 364 SQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLL--KKANEHDTKILNALLMY 776
+RW + R Y ++ N+ + L +E+L+ +A+ IL ++ Y
Sbjct: 424 RRWAAH--CRDYFER----NLEGYMLNLENLVHEHQADPKKMAILKSVYHY 468
>gi|429885519|ref|ZP_19367104.1| Exodeoxyribonuclease I [Vibrio cholerae PS15]
gi|429227636|gb|EKY33625.1| Exodeoxyribonuclease I [Vibrio cholerae PS15]
Length = 474
Score = 302 bits (774), Expect = 8e-79, Method: Composition-based stats.
Identities = 160/471 (33%), Positives = 265/471 (56%), Gaps = 16/471 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYET+G+N +DRP QFA +RTD+ N I P+++YC+ D+LP P A LIT I
Sbjct: 8 TFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G+ E +F + I P T S+GYN+I FDDE+TR+ +RN I+PY W+
Sbjct: 68 TPQKANSQGLAEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
+ SRWDL++V++A + L P GI WP ++G SFKLEHLS N + H AHDA++DV A
Sbjct: 128 HGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+ ++ P+LF++ ++R K+ + I P +++ M + Y S + PI
Sbjct: 188 TIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVPI 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L DP+ L D ++ L + D +P+ ++HLN+ PI
Sbjct: 248 AWHPTNQNAVIVVDLGKDPQPLLELDAETLQTRLYTRYEDLAPDELPVPVKLVHLNKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++ + D ++ I + + +K+ + + E ++D
Sbjct: 308 -LAPAKTLTAENAQKIGIDREQCLAHLNV---IRQHPEVREKLVTVFSQEREFNQESDVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LY F S D + I+R+ +P+ L ++ +K++E L+F YRAR++ TL+ E
Sbjct: 364 SQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLL--KKANEHDTKILNALLMY 776
+RW + R Y ++ N+ + L +E+L+ +A+ IL ++ Y
Sbjct: 424 RRWAAH--CRDYFER----NLEGYMLNLENLVHEHQADPKKMAILKSVYHY 468
>gi|15641247|ref|NP_230879.1| exonuclease I [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121591211|ref|ZP_01678513.1| exodeoxyribonuclease I [Vibrio cholerae 2740-80]
gi|121728822|ref|ZP_01681834.1| exodeoxyribonuclease I [Vibrio cholerae V52]
gi|147674379|ref|YP_001216801.1| exonuclease I [Vibrio cholerae O395]
gi|153819174|ref|ZP_01971841.1| exodeoxyribonuclease I [Vibrio cholerae NCTC 8457]
gi|153823017|ref|ZP_01975684.1| exodeoxyribonuclease I [Vibrio cholerae B33]
gi|227081406|ref|YP_002809957.1| exonuclease I [Vibrio cholerae M66-2]
gi|227117701|ref|YP_002819597.1| exodeoxyribonuclease I [Vibrio cholerae O395]
gi|254848359|ref|ZP_05237709.1| exonuclease I [Vibrio cholerae MO10]
gi|255745633|ref|ZP_05419581.1| exodeoxyribonuclease I [Vibrio cholera CIRS 101]
gi|262159091|ref|ZP_06030203.1| exodeoxyribonuclease I [Vibrio cholerae INDRE 91/1]
gi|262169449|ref|ZP_06037141.1| exodeoxyribonuclease I [Vibrio cholerae RC27]
gi|298498672|ref|ZP_07008479.1| exonuclease I [Vibrio cholerae MAK 757]
gi|379741048|ref|YP_005333017.1| exonuclease I [Vibrio cholerae IEC224]
gi|417813257|ref|ZP_12459914.1| exodeoxyribonuclease I [Vibrio cholerae HC-49A2]
gi|417816122|ref|ZP_12462754.1| exodeoxyribonuclease I [Vibrio cholerae HCUF01]
gi|418332270|ref|ZP_12943204.1| exodeoxyribonuclease I [Vibrio cholerae HC-06A1]
gi|418337013|ref|ZP_12945911.1| exodeoxyribonuclease I [Vibrio cholerae HC-23A1]
gi|418343527|ref|ZP_12950313.1| exodeoxyribonuclease I [Vibrio cholerae HC-28A1]
gi|418348681|ref|ZP_12953415.1| exodeoxyribonuclease I [Vibrio cholerae HC-43A1]
gi|418354955|ref|ZP_12957676.1| exodeoxyribonuclease I [Vibrio cholerae HC-61A1]
gi|421316010|ref|ZP_15766581.1| exodeoxyribonuclease I [Vibrio cholerae CP1032(5)]
gi|421320849|ref|ZP_15771406.1| exodeoxyribonuclease I [Vibrio cholerae CP1038(11)]
gi|421324841|ref|ZP_15775367.1| exodeoxyribonuclease I [Vibrio cholerae CP1041(14)]
gi|421328503|ref|ZP_15779017.1| exodeoxyribonuclease I [Vibrio cholerae CP1042(15)]
gi|421331524|ref|ZP_15782004.1| exodeoxyribonuclease I [Vibrio cholerae CP1046(19)]
gi|421335097|ref|ZP_15785564.1| exodeoxyribonuclease I [Vibrio cholerae CP1048(21)]
gi|421338992|ref|ZP_15789427.1| exodeoxyribonuclease I [Vibrio cholerae HC-20A2]
gi|421346852|ref|ZP_15797234.1| exodeoxyribonuclease I [Vibrio cholerae HC-46A1]
gi|422891344|ref|ZP_16933724.1| exodeoxyribonuclease I [Vibrio cholerae HC-40A1]
gi|422902555|ref|ZP_16937554.1| exodeoxyribonuclease I [Vibrio cholerae HC-48A1]
gi|422906434|ref|ZP_16941266.1| exodeoxyribonuclease I [Vibrio cholerae HC-70A1]
gi|422913020|ref|ZP_16947539.1| exodeoxyribonuclease I [Vibrio cholerae HFU-02]
gi|422925500|ref|ZP_16958525.1| exodeoxyribonuclease I [Vibrio cholerae HC-38A1]
gi|423144822|ref|ZP_17132431.1| exodeoxyribonuclease I [Vibrio cholerae HC-19A1]
gi|423149500|ref|ZP_17136828.1| exodeoxyribonuclease I [Vibrio cholerae HC-21A1]
gi|423153316|ref|ZP_17140510.1| exodeoxyribonuclease I [Vibrio cholerae HC-22A1]
gi|423156128|ref|ZP_17143232.1| exodeoxyribonuclease I [Vibrio cholerae HC-32A1]
gi|423159955|ref|ZP_17146923.1| exodeoxyribonuclease I [Vibrio cholerae HC-33A2]
gi|423164673|ref|ZP_17151431.1| exodeoxyribonuclease I [Vibrio cholerae HC-48B2]
gi|423730802|ref|ZP_17704116.1| exonuclease family protein [Vibrio cholerae HC-17A1]
gi|423753965|ref|ZP_17712123.1| exonuclease family protein [Vibrio cholerae HC-50A2]
gi|423892494|ref|ZP_17726177.1| exonuclease family protein [Vibrio cholerae HC-62A1]
gi|423927272|ref|ZP_17730794.1| exonuclease family protein [Vibrio cholerae HC-77A1]
gi|424001816|ref|ZP_17744902.1| exodeoxyribonuclease I [Vibrio cholerae HC-17A2]
gi|424005976|ref|ZP_17748956.1| exodeoxyribonuclease I [Vibrio cholerae HC-37A1]
gi|424023995|ref|ZP_17763655.1| exodeoxyribonuclease I [Vibrio cholerae HC-62B1]
gi|424026846|ref|ZP_17766459.1| exodeoxyribonuclease I [Vibrio cholerae HC-69A1]
gi|424590469|ref|ZP_18029906.1| exodeoxyribonuclease I [Vibrio cholerae CP1037(10)]
gi|424594816|ref|ZP_18034149.1| exodeoxyribonuclease I [Vibrio cholerae CP1040(13)]
gi|424598683|ref|ZP_18037877.1| exodeoxyribonuclease I [Vibrio Cholerae CP1044(17)]
gi|424601423|ref|ZP_18040576.1| exodeoxyribonuclease I [Vibrio cholerae CP1047(20)]
gi|424606412|ref|ZP_18045372.1| exodeoxyribonuclease I [Vibrio cholerae CP1050(23)]
gi|424610243|ref|ZP_18049097.1| exodeoxyribonuclease I [Vibrio cholerae HC-39A1]
gi|424613049|ref|ZP_18051852.1| exodeoxyribonuclease I [Vibrio cholerae HC-41A1]
gi|424616866|ref|ZP_18055553.1| exodeoxyribonuclease I [Vibrio cholerae HC-42A1]
gi|424621815|ref|ZP_18060338.1| exodeoxyribonuclease I [Vibrio cholerae HC-47A1]
gi|424644792|ref|ZP_18082540.1| exodeoxyribonuclease I [Vibrio cholerae HC-56A2]
gi|424652469|ref|ZP_18089945.1| exodeoxyribonuclease I [Vibrio cholerae HC-57A2]
gi|440709498|ref|ZP_20890155.1| exodeoxyribonuclease I [Vibrio cholerae 4260B]
gi|443503323|ref|ZP_21070304.1| exodeoxyribonuclease I [Vibrio cholerae HC-64A1]
gi|443507230|ref|ZP_21074014.1| exodeoxyribonuclease I [Vibrio cholerae HC-65A1]
gi|443511356|ref|ZP_21078011.1| exodeoxyribonuclease I [Vibrio cholerae HC-67A1]
gi|443514910|ref|ZP_21081438.1| exodeoxyribonuclease I [Vibrio cholerae HC-68A1]
gi|443518710|ref|ZP_21085120.1| exodeoxyribonuclease I [Vibrio cholerae HC-71A1]
gi|443523598|ref|ZP_21089826.1| exodeoxyribonuclease I [Vibrio cholerae HC-72A2]
gi|443531211|ref|ZP_21097226.1| exodeoxyribonuclease I [Vibrio cholerae HC-7A1]
gi|443534985|ref|ZP_21100880.1| exodeoxyribonuclease I [Vibrio cholerae HC-80A1]
gi|443538553|ref|ZP_21104408.1| exodeoxyribonuclease I [Vibrio cholerae HC-81A1]
gi|449056272|ref|ZP_21734940.1| Exodeoxyribonuclease I [Vibrio cholerae O1 str. Inaba G4222]
gi|9655715|gb|AAF94393.1| exodeoxyribonuclease I [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121546936|gb|EAX57085.1| exodeoxyribonuclease I [Vibrio cholerae 2740-80]
gi|121628910|gb|EAX61366.1| exodeoxyribonuclease I [Vibrio cholerae V52]
gi|126510260|gb|EAZ72854.1| exodeoxyribonuclease I [Vibrio cholerae NCTC 8457]
gi|126519445|gb|EAZ76668.1| exodeoxyribonuclease I [Vibrio cholerae B33]
gi|146316262|gb|ABQ20801.1| exodeoxyribonuclease I [Vibrio cholerae O395]
gi|227009294|gb|ACP05506.1| exodeoxyribonuclease I [Vibrio cholerae M66-2]
gi|227013151|gb|ACP09361.1| exodeoxyribonuclease I [Vibrio cholerae O395]
gi|254844064|gb|EET22478.1| exonuclease I [Vibrio cholerae MO10]
gi|255736708|gb|EET92105.1| exodeoxyribonuclease I [Vibrio cholera CIRS 101]
gi|262022262|gb|EEY40971.1| exodeoxyribonuclease I [Vibrio cholerae RC27]
gi|262029276|gb|EEY47928.1| exodeoxyribonuclease I [Vibrio cholerae INDRE 91/1]
gi|297543005|gb|EFH79055.1| exonuclease I [Vibrio cholerae MAK 757]
gi|340041848|gb|EGR02814.1| exodeoxyribonuclease I [Vibrio cholerae HCUF01]
gi|340042561|gb|EGR03526.1| exodeoxyribonuclease I [Vibrio cholerae HC-49A2]
gi|341623569|gb|EGS49093.1| exodeoxyribonuclease I [Vibrio cholerae HC-70A1]
gi|341623641|gb|EGS49164.1| exodeoxyribonuclease I [Vibrio cholerae HC-48A1]
gi|341624638|gb|EGS50123.1| exodeoxyribonuclease I [Vibrio cholerae HC-40A1]
gi|341639457|gb|EGS64074.1| exodeoxyribonuclease I [Vibrio cholerae HFU-02]
gi|341647370|gb|EGS71452.1| exodeoxyribonuclease I [Vibrio cholerae HC-38A1]
gi|356419081|gb|EHH72639.1| exodeoxyribonuclease I [Vibrio cholerae HC-06A1]
gi|356419769|gb|EHH73306.1| exodeoxyribonuclease I [Vibrio cholerae HC-21A1]
gi|356424988|gb|EHH78377.1| exodeoxyribonuclease I [Vibrio cholerae HC-19A1]
gi|356431532|gb|EHH84736.1| exodeoxyribonuclease I [Vibrio cholerae HC-22A1]
gi|356432591|gb|EHH85788.1| exodeoxyribonuclease I [Vibrio cholerae HC-23A1]
gi|356436271|gb|EHH89389.1| exodeoxyribonuclease I [Vibrio cholerae HC-28A1]
gi|356441802|gb|EHH94678.1| exodeoxyribonuclease I [Vibrio cholerae HC-32A1]
gi|356447420|gb|EHI00211.1| exodeoxyribonuclease I [Vibrio cholerae HC-43A1]
gi|356449071|gb|EHI01831.1| exodeoxyribonuclease I [Vibrio cholerae HC-33A2]
gi|356453357|gb|EHI06020.1| exodeoxyribonuclease I [Vibrio cholerae HC-61A1]
gi|356455482|gb|EHI08124.1| exodeoxyribonuclease I [Vibrio cholerae HC-48B2]
gi|378794558|gb|AFC58029.1| exonuclease I [Vibrio cholerae IEC224]
gi|395920511|gb|EJH31333.1| exodeoxyribonuclease I [Vibrio cholerae CP1041(14)]
gi|395920967|gb|EJH31787.1| exodeoxyribonuclease I [Vibrio cholerae CP1032(5)]
gi|395923831|gb|EJH34642.1| exodeoxyribonuclease I [Vibrio cholerae CP1038(11)]
gi|395930009|gb|EJH40758.1| exodeoxyribonuclease I [Vibrio cholerae CP1042(15)]
gi|395932788|gb|EJH43531.1| exodeoxyribonuclease I [Vibrio cholerae CP1046(19)]
gi|395936958|gb|EJH47681.1| exodeoxyribonuclease I [Vibrio cholerae CP1048(21)]
gi|395943940|gb|EJH54614.1| exodeoxyribonuclease I [Vibrio cholerae HC-20A2]
gi|395945912|gb|EJH56576.1| exodeoxyribonuclease I [Vibrio cholerae HC-46A1]
gi|395960715|gb|EJH71076.1| exodeoxyribonuclease I [Vibrio cholerae HC-56A2]
gi|395961771|gb|EJH72082.1| exodeoxyribonuclease I [Vibrio cholerae HC-57A2]
gi|395965117|gb|EJH75301.1| exodeoxyribonuclease I [Vibrio cholerae HC-42A1]
gi|395972360|gb|EJH81954.1| exodeoxyribonuclease I [Vibrio cholerae HC-47A1]
gi|395977805|gb|EJH87203.1| exodeoxyribonuclease I [Vibrio cholerae CP1047(20)]
gi|408008477|gb|EKG46455.1| exodeoxyribonuclease I [Vibrio cholerae HC-39A1]
gi|408014890|gb|EKG52506.1| exodeoxyribonuclease I [Vibrio cholerae HC-41A1]
gi|408034561|gb|EKG71054.1| exodeoxyribonuclease I [Vibrio cholerae CP1037(10)]
gi|408035089|gb|EKG71568.1| exodeoxyribonuclease I [Vibrio cholerae CP1040(13)]
gi|408043753|gb|EKG79733.1| exodeoxyribonuclease I [Vibrio Cholerae CP1044(17)]
gi|408045109|gb|EKG80976.1| exodeoxyribonuclease I [Vibrio cholerae CP1050(23)]
gi|408625558|gb|EKK98464.1| exonuclease family protein [Vibrio cholerae HC-17A1]
gi|408638606|gb|EKL10494.1| exonuclease family protein [Vibrio cholerae HC-50A2]
gi|408656434|gb|EKL27529.1| exonuclease family protein [Vibrio cholerae HC-77A1]
gi|408657667|gb|EKL28744.1| exonuclease family protein [Vibrio cholerae HC-62A1]
gi|408847375|gb|EKL87446.1| exodeoxyribonuclease I [Vibrio cholerae HC-37A1]
gi|408848564|gb|EKL88612.1| exodeoxyribonuclease I [Vibrio cholerae HC-17A2]
gi|408871613|gb|EKM10847.1| exodeoxyribonuclease I [Vibrio cholerae HC-62B1]
gi|408879930|gb|EKM18867.1| exodeoxyribonuclease I [Vibrio cholerae HC-69A1]
gi|439975087|gb|ELP51223.1| exodeoxyribonuclease I [Vibrio cholerae 4260B]
gi|443432278|gb|ELS74807.1| exodeoxyribonuclease I [Vibrio cholerae HC-64A1]
gi|443436263|gb|ELS82386.1| exodeoxyribonuclease I [Vibrio cholerae HC-65A1]
gi|443439531|gb|ELS89229.1| exodeoxyribonuclease I [Vibrio cholerae HC-67A1]
gi|443443740|gb|ELS97025.1| exodeoxyribonuclease I [Vibrio cholerae HC-68A1]
gi|443447759|gb|ELT04401.1| exodeoxyribonuclease I [Vibrio cholerae HC-71A1]
gi|443450330|gb|ELT10606.1| exodeoxyribonuclease I [Vibrio cholerae HC-72A2]
gi|443458294|gb|ELT25690.1| exodeoxyribonuclease I [Vibrio cholerae HC-7A1]
gi|443461847|gb|ELT32903.1| exodeoxyribonuclease I [Vibrio cholerae HC-80A1]
gi|443466142|gb|ELT40801.1| exodeoxyribonuclease I [Vibrio cholerae HC-81A1]
gi|448264095|gb|EMB01334.1| Exodeoxyribonuclease I [Vibrio cholerae O1 str. Inaba G4222]
Length = 474
Score = 302 bits (774), Expect = 8e-79, Method: Composition-based stats.
Identities = 161/471 (34%), Positives = 266/471 (56%), Gaps = 16/471 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYET+G+N +DRP QFA +RTD+ N I P+++YC+ D+LP P A LIT I
Sbjct: 8 TFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G+ E +F + I P TI++GYN+I FDDE+TR+ +RN I+PY W+
Sbjct: 68 TPQKANSQGLAEPEFIARIHAELSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
+ SRWDL++V++A + L P GI WP ++G SFKLEHLS N + H AHDA++DV A
Sbjct: 128 HGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+ ++ P+LF++ ++R K+ + I P +++ M + Y S + PI
Sbjct: 188 TIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVPI 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L DP+ L D ++ L + D +P+ ++HLN+ PI
Sbjct: 248 AWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++ + D ++ I + I +K+ + + E ++D
Sbjct: 308 -LAPAKTLTAENAQKIGIDREQCLAHLNV---IRQHPEIREKLVTVFSQEREFNQESDVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LY F S D + I+R+ +P+ L ++ +K++E L+F YRAR++ TL+ E
Sbjct: 364 SQLYAGFFSPADRAAMEIIRTTAPENLGSLAIRVADKRIEPLLFRYRARHYPHTLTDTEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLL--KKANEHDTKILNALLMY 776
+RW + R Y ++ N+ + L +E+L+ +A+ IL ++ Y
Sbjct: 424 RRWAAH--CRDYFER----NLEGYMLNLENLVHEHQADPKKMAILKSVYHY 468
>gi|153801904|ref|ZP_01956490.1| exodeoxyribonuclease I [Vibrio cholerae MZO-3]
gi|124122549|gb|EAY41292.1| exodeoxyribonuclease I [Vibrio cholerae MZO-3]
Length = 474
Score = 302 bits (774), Expect = 8e-79, Method: Composition-based stats.
Identities = 161/471 (34%), Positives = 265/471 (56%), Gaps = 16/471 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYET+G+N +DRP QFA +RTD+ N I P+++YC+ D+LP P A LIT I
Sbjct: 8 TFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G+ E +F + I P TI++GYN+I FDDE+TR+ +RN I+PY W+
Sbjct: 68 TPQKANSQGLAEPEFIARIHAELSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
SRWDL++V++A + L P GI WP ++G SFKLEHLS N + H AHDA++DV A
Sbjct: 128 RGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+ ++ P+LF++ ++R K+ + I P +++ M + Y S + PI
Sbjct: 188 TIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVPI 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L DP+ L D ++ L + D +P+ ++HLN+ PI
Sbjct: 248 AWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++ + D ++ I + I +K+ + + E ++D
Sbjct: 308 -LAPAKTLTAENAQKIGIDREQCLAHLNV---IRQHPEIREKLVTVFSQERGFNQESDVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LY F S D + I+R+ +P+ L ++ +K++E L+F YRAR++ TL+ E
Sbjct: 364 SQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLL--KKANEHDTKILNALLMY 776
+RW + R Y ++ N+ + L +E+L+ +A+ IL ++ Y
Sbjct: 424 RRWAAH--CRDYFER----NLEGYMLNLENLVHEHQADPKKMAILKSVYHY 468
>gi|153212250|ref|ZP_01948038.1| exodeoxyribonuclease I [Vibrio cholerae 1587]
gi|422910024|ref|ZP_16944666.1| exodeoxyribonuclease I [Vibrio cholerae HE-09]
gi|124116628|gb|EAY35448.1| exodeoxyribonuclease I [Vibrio cholerae 1587]
gi|341633936|gb|EGS58712.1| exodeoxyribonuclease I [Vibrio cholerae HE-09]
Length = 474
Score = 302 bits (774), Expect = 9e-79, Method: Composition-based stats.
Identities = 161/471 (34%), Positives = 266/471 (56%), Gaps = 16/471 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYET+G+N +DRP QFA +RTD+ N I P+++YC+ D+LP P A LIT I
Sbjct: 8 TFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G+ E +F + I P TIS+GYN+I FDDE+TR+ +RN I+PY W+
Sbjct: 68 TPQKANSQGLAEPEFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
+ SRWDL++V++A + L P GI WP ++G SFKLEHLS N + H AHDA++DV A
Sbjct: 128 HGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+ ++ P+LF++ ++R K+ + I P +++ M + Y S + PI
Sbjct: 188 TIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVPI 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L DP+ L + ++ L + D +P+ ++HLN+ PI
Sbjct: 248 AWHPTNQNAVIVVDLGKDPQPLLELNAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++ + D ++ I + I +K+ + + E ++D
Sbjct: 308 -LAPAKTLTAENAQKIGIDREQCLAHLNV---IRQHPEIREKLVTVFSQEREFNQESDVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LY F S D + I+R+ +P+ L ++ +K++E L+F YRAR++ TL+ E
Sbjct: 364 SQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLL--KKANEHDTKILNALLMY 776
+RW + R Y ++ N+ + L +E+L+ +A+ IL ++ Y
Sbjct: 424 RRWAAH--CRDYFER----NLEGYMLNLENLVHEHQADPKKMAILKSVYHY 468
>gi|190575052|ref|YP_001972897.1| exonuclease I [Stenotrophomonas maltophilia K279a]
gi|190012974|emb|CAQ46606.1| putative exodeoxyribonuclease I [Stenotrophomonas maltophilia
K279a]
Length = 479
Score = 302 bits (774), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 161/473 (34%), Positives = 254/473 (53%), Gaps = 9/473 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+FL+YD ETFG + RR R QFAAIRTD LN ID P+ + +PA D LP P A L+T I
Sbjct: 4 SFLFYDLETFGQDPRRTRISQFAAIRTDADLNEIDTPVSFFVRPADDLLPSPMATLVTGI 63
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L GI E + I + +PGT ++GYNT+ FDDE R+ +RN +PYEREW+
Sbjct: 64 TPQQALAEGISEAEAFDRINEQLSRPGTCALGYNTLRFDDEFVRYGLFRNFHDPYEREWR 123
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++ + P GI WP + +G SFKLEHL+ N++ AH+ALSDVRA
Sbjct: 124 NGNSRWDLLDMLRLMRAMRPDGIQWPLREDGATSFKLEHLAEANHVREGDAHEALSDVRA 183
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+G+ARL + + PRL+++ L LR K++V + +P +I+ + + + + P+
Sbjct: 184 TIGMARLFKQSQPRLWDYALKLRDKRFVGGLLDVAAMKPVLHISMRYPASRLCAAPVLPL 243
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
+HP N +I ++L + L I L + + E +P+ +HLN+ P
Sbjct: 244 AVHPTINNRVIVFDLEGEIDDLLELPAEVIAQRLYMRASELPEGVARVPLKEVHLNKVPA 303
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
+I+ + + + + L+ A K + +K Y + ++D
Sbjct: 304 LIAWNHLRADD---HARLGLDVAAIEAKVERLRAFAPQLAEKARQVYNQPRAATVADVDA 360
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
LY+ F+ D LA+ R+ +P++L+ + F + +L EL+F YRARN ++L+ E +
Sbjct: 361 SLYDGFLGNGDKPLLALARTTAPEQLAALEGRFRDPRLPELLFRYRARNHPDSLAPPERQ 420
Query: 729 RWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK---ILNALLMYGK 778
RW+ YR R Y + L DT+ +L +L +G+
Sbjct: 421 RWQDYRRQRLLGDGGLGELNLPQYQQQLDALAAEAPDDTRRQALLQSLRDWGQ 473
>gi|424669363|ref|ZP_18106388.1| hypothetical protein A1OC_02968 [Stenotrophomonas maltophilia
Ab55555]
gi|401071434|gb|EJP79945.1| hypothetical protein A1OC_02968 [Stenotrophomonas maltophilia
Ab55555]
Length = 479
Score = 302 bits (774), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 161/473 (34%), Positives = 253/473 (53%), Gaps = 9/473 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+FL+YD ETFG + RR R QFAAIRTD LN ID P+ + +PA D LP P A L+T I
Sbjct: 4 SFLFYDLETFGQDPRRTRISQFAAIRTDADLNEIDTPVSFFVRPADDLLPSPMATLVTGI 63
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L GI E + I + +PGT ++GYNT+ FDDE R+ +RN +PYEREW+
Sbjct: 64 TPQQALAEGISEAEAFDRINEQLSRPGTCALGYNTLRFDDEFVRYGLFRNFHDPYEREWR 123
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++ + P GI WP + +G SFKLEHL+ N + AH+ALSDVRA
Sbjct: 124 NGNSRWDLLDMLRLMRAMRPDGIQWPLREDGATSFKLEHLAEANQVREGDAHEALSDVRA 183
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+G+ARL + + PRL+++ L LR K++V + +P +I+ + + + + P+
Sbjct: 184 TIGMARLFKQSQPRLWDYALKLRDKRFVGGLLDVAAMKPVLHISMRYPASRLCAAPVLPL 243
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
+HP N +I ++L + L I L + + E +P+ +HLN+ P
Sbjct: 244 AVHPTINNRVIVFDLEGEIDDLLELPAEVIAQRLYMRASELPEGAARVPLKEVHLNKVPA 303
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
+I+ + + + + L+ A K + +K Y + ++D
Sbjct: 304 LIAWNHLRADD---HARLGLDVAAIEAKVERLRAFAPQLAEKARQVYNQPRAATVADVDA 360
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
LY+ F+ D LA+ R+ +P++L+ + F + +L EL+F YRARN ++L+ E +
Sbjct: 361 SLYDGFLGNGDKPLLALARTTAPEQLAALEGRFRDPRLPELLFRYRARNHPDSLAPPERQ 420
Query: 729 RWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK---ILNALLMYGK 778
RW+ YR R Y + L DT+ +L +L +G+
Sbjct: 421 RWQDYRRQRLLGDGGLGELNLPQYQQQLDALATEAPDDTRRQALLQSLRDWGQ 473
>gi|293604245|ref|ZP_06686653.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553]
gi|292817470|gb|EFF76543.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553]
Length = 905
Score = 302 bits (774), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 137/270 (50%), Positives = 195/270 (72%), Gaps = 4/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRAF+A+PD+RN P GALYG + MLRKL +++A Y ACIFDA+GK FR+
Sbjct: 8 VDGSSYLYRAFHAMPDLRNAQGEPTGALYGVVNMLRKLVSDHKAEYAACIFDARGKTFRD 67
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LYP YK+ R MP +L QI IH+ V+A+GWP+L I+GVEADDVIGTLAK+A +H++
Sbjct: 68 DLYPEYKSHRPPMPEDLAAQIEPIHRAVRALGWPVLAIEGVEADDVIGTLAKRA-AEHDV 126
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
I+ST DKD+AQLV++ + L+N ++ D ++++FGV P++IVDY L+GD DN+
Sbjct: 127 HTIVSTGDKDLAQLVNSHVTLVNTMTGEVLDEPGVVNKFGVPPDRIVDYLMLVGDTVDNV 186
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV K+GPKTAVK L ++ S++ +I A IKGV G NLR A+ P +++LT+K DCD
Sbjct: 187 PGVTKVGPKTAVKWLTEFGSIDKLIEGAETIKGVAGNNLREAIPNFPLTRQLLTVKYDCD 246
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
LT ++ S+ + LI + +D L +L+ +Y
Sbjct: 247 LTGHVESV-DDLIPRERDTATLTELYERYG 275
>gi|422922489|ref|ZP_16955675.1| exodeoxyribonuclease I [Vibrio cholerae BJG-01]
gi|341645964|gb|EGS70084.1| exodeoxyribonuclease I [Vibrio cholerae BJG-01]
Length = 474
Score = 302 bits (773), Expect = 1e-78, Method: Composition-based stats.
Identities = 161/471 (34%), Positives = 265/471 (56%), Gaps = 16/471 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYET+G+N +DRP QFA +RTD+ N I P+++YC+ D+LP P A LIT I
Sbjct: 8 TFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G+ E +F + I P T S+GYN+I FDDE+TR+ +RN I+PY W+
Sbjct: 68 TPQKANSQGLAEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
+ SRWDL++V++A + L P GI WP ++G SFKLEHLS N + H AHDA++DV A
Sbjct: 128 HGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+ ++ P+LF++ ++R K+ + I P +++ M + Y S + PI
Sbjct: 188 TIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVPI 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L DP+ L D ++ L + D +P+ ++HLN+ PI
Sbjct: 248 AWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDDLPVPVKLVHLNKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++ + D ++ I + I +K+ + + E ++D
Sbjct: 308 -LAPAKTLTAENAQKIGIDREQCLAHLNV---IRQHPEIREKLVTVFSQEREFNQESDVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LY F S D + I+R+ +P+ L ++ +K++E L+F YRAR++ TL+ E
Sbjct: 364 SQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLL--KKANEHDTKILNALLMY 776
+RW + R Y ++ N+ + L +E+L+ +A+ IL ++ Y
Sbjct: 424 RRWAAH--CRDYFER----NLEGYMLNLENLVHEHQADPKKMAILKSVYHY 468
>gi|261211043|ref|ZP_05925333.1| exodeoxyribonuclease I [Vibrio sp. RC341]
gi|260840018|gb|EEX66618.1| exodeoxyribonuclease I [Vibrio sp. RC341]
Length = 474
Score = 302 bits (773), Expect = 1e-78, Method: Composition-based stats.
Identities = 166/471 (35%), Positives = 263/471 (55%), Gaps = 16/471 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYET+G+N +DRP QFA +RTDI N I P+++YC+ D+LP P A LIT I
Sbjct: 8 TFFFFDYETWGVNPAKDRPSQFAGVRTDIDFNIIGEPLVIYCQLPNDYLPAPEAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G+PE +F + I P T S+GYN+I FDDE+TR+ +RN I+PY W+
Sbjct: 68 TPQKANSLGLPEPEFIARIHAELSTPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
+ SRWDL++VI+A + L P G+ WP +G SFKLE LS N + H AHDA++DV A
Sbjct: 128 HGNSRWDLLDVIRACHALRPEGMKWPENEDGFTSFKLERLSVANGIEHSNAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+ I+ P+LF++ ++R K+ + I P +++ M + Y S + PI
Sbjct: 188 TIELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVPI 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L DP+ L D ++ L D IP+ ++HLN+ PI
Sbjct: 248 AWHPTNQNAVIVVDLGKDPQPLLELDAEALQARLYTHYEDLAPDELPIPVKLVHLNKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++ + D ++ I + I +K+ + E N+D
Sbjct: 308 -LAPAKTLTAENAQKIGIDREQCLAHLNV---IRQHPQIREKLVSVFSQEREFAKENNVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LY+ F S D + I+R+ P+ L N++ +K++E L+F YRAR++ TL+ E
Sbjct: 364 SQLYDGFFSPADRAAMDIIRTTEPENLGNLDIKVADKRIEPLLFRYRARHYPHTLTDAEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLL--KKANEHDTKILNALLMY 776
+RW + R Y ++ N+ + L +E+L+ +A+ IL ++ Y
Sbjct: 424 RRWAAH--CRDYFER----NLESYMLNLENLVHEHQADPKKMAILKSVYHY 468
>gi|417820650|ref|ZP_12467264.1| exodeoxyribonuclease I [Vibrio cholerae HE39]
gi|423952412|ref|ZP_17734126.1| exonuclease family protein [Vibrio cholerae HE-40]
gi|423982064|ref|ZP_17737909.1| exonuclease family protein [Vibrio cholerae HE-46]
gi|340038281|gb|EGQ99255.1| exodeoxyribonuclease I [Vibrio cholerae HE39]
gi|408660275|gb|EKL31296.1| exonuclease family protein [Vibrio cholerae HE-40]
gi|408665064|gb|EKL35883.1| exonuclease family protein [Vibrio cholerae HE-46]
Length = 474
Score = 301 bits (772), Expect = 1e-78, Method: Composition-based stats.
Identities = 161/471 (34%), Positives = 265/471 (56%), Gaps = 16/471 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYET+G+N +DRP QFA +RTD+ N I P+++YC+ D+LP P A LIT I
Sbjct: 8 TFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G+ E +F + I P T S+GYN+I FDDE+TR+ +RN I+PY W+
Sbjct: 68 TPQKANSQGLAEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
+ SRWDL++V++A + L P GI WP ++G SFKLEHLS N + H AHDA++DV A
Sbjct: 128 HGNSRWDLLDVLRACHALRPEGIEWPENDDGFISFKLEHLSVANGIEHSNAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+ ++ P+LF++ ++R K+ + I P +++ M + Y S + PI
Sbjct: 188 TIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVPI 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L DP+ L D ++ L + D +P+ ++HLN+ PI
Sbjct: 248 AWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++ + D ++ I + I +K+ + + E ++D
Sbjct: 308 -LAPAKTLTAENAQKIGIDREQCLAHLNV---IRQHPEIREKLVTVFSQEREFNQESDVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LY F S D + I+R+ +P+ L ++ +K++E L+F YRAR++ TL+ E
Sbjct: 364 SQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDAEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLL--KKANEHDTKILNALLMY 776
+RW + R Y ++ N+ + L +E+L+ +A+ IL ++ Y
Sbjct: 424 RRWAAH--CRDYFER----NLEGYMLNLENLVHEHQADPKKMAILKSVYHY 468
>gi|456736601|gb|EMF61327.1| Exodeoxyribonuclease I [Stenotrophomonas maltophilia EPM1]
Length = 479
Score = 301 bits (772), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 161/473 (34%), Positives = 254/473 (53%), Gaps = 9/473 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+FL+YD ETFG + RR R QFAAIRTD LN ID P+ + +PA D LP P A L+T I
Sbjct: 4 SFLFYDLETFGQDPRRTRISQFAAIRTDADLNEIDTPVSFFVRPADDLLPSPMATLVTGI 63
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L GI E + I + +PGT ++GYNT+ FDDE R+ +RN +PYEREW+
Sbjct: 64 TPQQALAEGISEAEAFDRINEQLSRPGTCALGYNTLRFDDEFVRYGLFRNFHDPYEREWR 123
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++ + P GI WP + +G SFKLEHL+ N++ AH+ALSDVRA
Sbjct: 124 NGNSRWDLLDMLRLMRAMRPDGIQWPLREDGATSFKLEHLAEANHVREGDAHEALSDVRA 183
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+G+ARL + + PRL+++ L LR K++V + +P +I+ + + + + P+
Sbjct: 184 TIGMARLFKQSQPRLWDYALKLRDKRFVGGLLDVAAMKPVLHISLRYPASRLCAAPVLPL 243
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
+HP N +I ++L + L I L + + E +P+ +HLN+ P
Sbjct: 244 AVHPTINNRVIVFDLEGEIDDLLELPAEVIAQRLYMRASELPEGVARVPLKEVHLNKVPA 303
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
+I+ + + + + L+ A K + +K Y + ++D
Sbjct: 304 LIAWNHLRADD---HARLGLDVAAIEAKVERLRAFAPQLAEKARQVYNQPRAATVADVDA 360
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
LY+ F+ D LA+ R+ +P++L+ + F + +L EL+F YRARN ++L+ E +
Sbjct: 361 SLYDGFLGNGDKPLLALARTTAPEQLAALEGRFRDPRLPELLFRYRARNHPDSLAPPERQ 420
Query: 729 RWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK---ILNALLMYGK 778
RW+ YR R Y + L DT+ +L +L +G+
Sbjct: 421 RWQDYRRQRLLGDGGLGELNLPQYQQQLDALAAEAPDDTRRQALLQSLRDWGQ 473
>gi|258620230|ref|ZP_05715269.1| exodeoxyribonuclease I [Vibrio mimicus VM573]
gi|424807827|ref|ZP_18233229.1| exodeoxyribonuclease I [Vibrio mimicus SX-4]
gi|258587588|gb|EEW12298.1| exodeoxyribonuclease I [Vibrio mimicus VM573]
gi|342324364|gb|EGU20145.1| exodeoxyribonuclease I [Vibrio mimicus SX-4]
Length = 474
Score = 301 bits (772), Expect = 1e-78, Method: Composition-based stats.
Identities = 164/471 (34%), Positives = 262/471 (55%), Gaps = 16/471 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYET+G+N +DRP QFA +RTD+ N I P+++YC+ D+LP P A LIT I
Sbjct: 8 TFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G+ E +F + I P T S+GYN+I FDDE+TR+ +RN I+PY W+
Sbjct: 68 TPQKANSLGLSEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
+ SRWDL++VI+A + L P GI WP + G SFKLEHLS N + H AHDA++DV A
Sbjct: 128 HGNSRWDLLDVIRACHALRPEGIEWPENDEGFTSFKLEHLSVANGIEHSNAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+ I+ P+LF++ ++R K+ + I P +++ M + Y S + PI
Sbjct: 188 TIELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERQYTSWIVPI 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L DP+ D ++ L + D +P+ ++HLN+ PI
Sbjct: 248 AWHPTNQNAVIVVDLGKDPQPLFDLDAEALQARLYTRYEDLAPDELPVPVKLVHLNKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++ + D ++ I + I +K+ + E N+D
Sbjct: 308 -LAPAKTLTAENAEKIGIDREQCLAHLNV---IRQHPEIREKLVTVFSQEREFAKENNVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LY F S D + I+R+ SP L +++ +K++E L+F YRAR++ TL+ E
Sbjct: 364 SQLYEGFFSPADRAAMEIIRTTSPDNLGSLDIQVADKRIEPLLFRYRARHYPHTLTDAEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLL--KKANEHDTKILNALLMY 776
+RW + R Y ++ N+ + L +E+L+ + +E IL ++ Y
Sbjct: 424 RRWAAH--CRDYFER----NLESYMLNLENLVHEHQTDEKKMAILKSVYHY 468
>gi|254482823|ref|ZP_05096060.1| Exonuclease C-terminal domain family protein [marine gamma
proteobacterium HTCC2148]
gi|214036904|gb|EEB77574.1| Exonuclease C-terminal domain family protein [marine gamma
proteobacterium HTCC2148]
Length = 460
Score = 301 bits (771), Expect = 2e-78, Method: Composition-based stats.
Identities = 152/417 (36%), Positives = 241/417 (57%), Gaps = 15/417 (3%)
Query: 332 QFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKITPQFCLNNGIPEYKFASIIE 391
QFA +RTD LN I P+++Y +PA DFLP P+ACL+T ITPQ L G+PE +F +I
Sbjct: 2 QFAGLRTDADLNPIGEPLVIYSRPANDFLPHPQACLVTGITPQKALAEGLPEAEFIRLIH 61
Query: 392 KIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSP 451
PGT VGYN++ FDDE++R+ +RN +PY REW+N SRWD+I++++A Y L P
Sbjct: 62 AELAAPGTCGVGYNSLRFDDEVSRYTLYRNFYDPYGREWQNGNSRWDIIDMVRACYALRP 121
Query: 452 YGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRATLGLARLIRNNNPRLFNFIL 511
GI WP + +G+PSF+LE L+ N ++H+ AHDALSDV AT+ +ARLI+ PRL++++L
Sbjct: 122 EGIEWPLREDGQPSFRLEALTAANGIAHEAAHDALSDVHATIAMARLIKTKQPRLYDYVL 181
Query: 512 SLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPICIHPMNKNILITWNLLHDPK 571
R K+ V + +P +++ MF + I L+ P+ +HP NKN +I ++L+ DP
Sbjct: 182 KHRDKRSVSTLLDLDAMKPVLHVSGMFGAVRHNIGLIVPLAMHPTNKNEVICYDLMTDPA 241
Query: 572 KFLLNDINKIRDYLCFKKNSFKEDIP---ISMIHLNRSPIVISNLKVLSSNLMFRYKFDL 628
+ + R L + + E + +H+N+ PI+++ K+ R L
Sbjct: 242 MLMQQSPEETRTLLYTRADELPEGTERPGLKSVHINKCPILVT-AKMADPETAAR----L 296
Query: 629 NCAFKNIKCASSIL------NNTYIWKKIFLDYKINNSDLELNIDEELYN-NFISKKDNL 681
+ + + + L ++ +KI + D + D LY+ F D
Sbjct: 297 GISGEQCRAHLAALREYRGRDSQGFVQKIQAIFSGRQFDEITDPDRMLYSGGFFGATDKR 356
Query: 682 KLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKRWKKYRISRF 738
+ +R S ++L++ F FE+ +L E++F YRARN+ +TLS +EL W++YR R
Sbjct: 357 LMDQVRESSAEELASATFPFEDGRLTEMLFRYRARNYPQTLSGEELALWEEYRFQRL 413
>gi|424660338|ref|ZP_18097585.1| exodeoxyribonuclease I [Vibrio cholerae HE-16]
gi|408050821|gb|EKG85960.1| exodeoxyribonuclease I [Vibrio cholerae HE-16]
Length = 474
Score = 301 bits (771), Expect = 2e-78, Method: Composition-based stats.
Identities = 159/471 (33%), Positives = 265/471 (56%), Gaps = 16/471 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYET+G+N +DRP QFA +RTD+ N I P+++YC+ D+LP P A LIT I
Sbjct: 8 TFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G+ E +F + I P T S+GYN+I FDDE+TR+ +RN ++PY W+
Sbjct: 68 TPQKANSQGLAEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFVDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
+ SRWDL++V++A + L P GI WP ++G SFKLEHLS N + H AHDA++DV A
Sbjct: 128 HGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+ ++ P+LF++ ++R K+ + I P +++ M + Y S + PI
Sbjct: 188 TIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVPI 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L DP+ + D ++ L + D +P+ ++HLN+ PI
Sbjct: 248 AWHPTNQNAVIVVDLGKDPQPLMDLDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++ + D ++ I + I +K+ + + E ++D
Sbjct: 308 -LAPAKTLTAENAQKIGIDREQCLAHLNV---IRQHPEIREKLVTVFSQEREFNQESDVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LY F S D + I+R+ +P+ L ++ +K++E L+F YRAR++ TL+ E
Sbjct: 364 SQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLTDTEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLL--KKANEHDTKILNALLMY 776
+RW + R Y ++ N+ + L +E+L+ +A+ IL ++ Y
Sbjct: 424 RRWAAH--CRDYFER----NLEGYMLNLENLVHEHQADPKKMAILKSVYHY 468
>gi|88800886|ref|ZP_01116440.1| putative exodeoxyribonuclease i protein [Reinekea blandensis
MED297]
gi|88776399|gb|EAR07620.1| putative exodeoxyribonuclease i protein [Reinekea sp. MED297]
Length = 517
Score = 301 bits (771), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 160/470 (34%), Positives = 257/470 (54%), Gaps = 9/470 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
++LWYDYET+G RDR QFAA+RTD+ LN I+ PI L+CKP D + DP A IT++
Sbjct: 10 SYLWYDYETWGTVPSRDRIAQFAAVRTDMDLNIIEEPINLFCKPDIDTVIDPGAVQITRL 69
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
+P G+ E++F+ + +P T + GYN+I FDDE +RF+F+RNLINPYEREWK
Sbjct: 70 SPLELEQTGLSEWEFSQAVHNAMAQPNTCTTGYNSIRFDDECSRFLFYRNLINPYEREWK 129
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL++V++ + L P GI WP +++G PSF+LEHL+ N LSH AHDA+SDV+A
Sbjct: 130 NGNSRWDLLDVVRMTHALRPDGIEWPRRDDGSPSFRLEHLTAANGLSHANAHDAVSDVKA 189
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+LIR P+LF++ SLR K I +P + + + + + P+
Sbjct: 190 TIALAQLIRKQQPKLFDYAFSLRSKHRAREAIDLVGGKPHLHFSGKIPASEFCMGIEVPL 249
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLNRSPI 608
HP N +I ++ DP L +D + +R +L K E P+ IHLNRSP+
Sbjct: 250 MAHPDRNNEVIVIDIREDPAWILDHDADTLRTWLYAKTEELPEGARRPPLKTIHLNRSPM 309
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
I+ + +L R DL+ + + + + +F + + + + ++
Sbjct: 310 -IAPMSLLDDETTTRLGVDLDAIQHHYRWVADHPELNRLAMDVFTETQERAA--ITDPEQ 366
Query: 669 ELYNNFISKKDNLKLAILRS--MSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
LY+ FIS D L +R+ + P++ + + ++ +L ++ AR F + L+ ++
Sbjct: 367 ALYSGFISDHDQALLNRMRTGKLPPEQWLDNSHLLQDDRLPTILLNLLARAFPDCLTEQQ 426
Query: 727 LKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMY 776
L W+ R + +++ + + + ++L A D L MY
Sbjct: 427 LSEWQDQRRTYLIEQQDERH-LTLSQALTDTLALLAETPDDPALTDTRMY 475
>gi|21231005|ref|NP_636922.1| exonuclease I [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66768990|ref|YP_243752.1| exonuclease I [Xanthomonas campestris pv. campestris str. 8004]
gi|21112628|gb|AAM40846.1| exodeoxyribonuclease I [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66574322|gb|AAY49732.1| exodeoxyribonuclease I [Xanthomonas campestris pv. campestris str.
8004]
Length = 481
Score = 301 bits (771), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 163/475 (34%), Positives = 258/475 (54%), Gaps = 13/475 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+FL+YD ETFG + RR R QFAA+RTD L I+ PI + +PA D LP P A ++T I
Sbjct: 4 SFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTGI 63
Query: 372 TPQFCLNNGIPEYK-FASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
TPQ L G+ E + FA I E++ +P T ++GYN+I FDDE R +RN +PYEREW
Sbjct: 64 TPQHALREGVNEAEAFARIAEQMG-RPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYEREW 122
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDL++V++ + L P GI WP + +G SFKLEHL+ N + AH+ALSDV
Sbjct: 123 RGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANAVREGDAHEALSDVY 182
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+G+AR + + P+L+++ L LR K++ + + +P +I+ + + + + P
Sbjct: 183 ATIGMARKFQQSQPKLWDYALRLRDKRFAASLLDVIAMQPVLHISQRYPATRLCAAAVLP 242
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP + +I ++L DP L ++I D L + E IP+ +HLN++P
Sbjct: 243 LSRHPRIDSRVIVFDLDGDPDALLRLSPDEIADRLYIRAADLPEGEQRIPLKEVHLNKAP 302
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL--N 665
+++ + S + + ++ A K A + +K+ Y + +
Sbjct: 303 ALVAWQHLRSDDFQ---RLGVDRAAVEAKAARLRELGPELAEKVRQVYGAERAGAAAVND 359
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
D LY+ F+++ D L +RS +P +L + F + +L EL+F YRARN+ +TLS
Sbjct: 360 ADASLYDGFLAEGDKRLLTQVRSSAPGELGAMEARFRDPRLIELLFRYRARNWPQTLSPH 419
Query: 726 ELKRWKKYRISRFYNKKN-NLYNINMFYLEIESLLKKANEHDTK--ILNALLMYG 777
E +RW YR R + + FY +I L + TK +L+ L +G
Sbjct: 420 EHQRWNDYRRQRLLEDRGLGEVTLEQFYAQIADLRLAHPDDATKQSLLDQLAAWG 474
>gi|262171739|ref|ZP_06039417.1| exodeoxyribonuclease I [Vibrio mimicus MB-451]
gi|261892815|gb|EEY38801.1| exodeoxyribonuclease I [Vibrio mimicus MB-451]
Length = 474
Score = 301 bits (770), Expect = 2e-78, Method: Composition-based stats.
Identities = 164/471 (34%), Positives = 262/471 (55%), Gaps = 16/471 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYET+G+N +DRP QFA +RTD+ N I P+++YC+ D+LP P A LIT I
Sbjct: 8 TFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPDAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G+ E +F + I P T S+GYN+I FDDE+TR+ +RN I+PY W+
Sbjct: 68 TPQKANSLGLSEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
+ SRWDL++VI+A + L P GI WP + G SFKLEHLS N + H AHDA++DV A
Sbjct: 128 HGNSRWDLLDVIRACHALRPEGIEWPENDEGFTSFKLEHLSVANGIEHSNAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+ I+ P+LF++ ++R K+ + I P +++ M + Y S + PI
Sbjct: 188 TIELAKKIKAAQPKLFDYFFNMRHKRKLTELIDIVNQTPLMHVSGMLGRERQYTSWIVPI 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L DP+ D ++ L + D +P+ ++HLN+ PI
Sbjct: 248 AWHPTNQNAVIVVDLGKDPQPLFDLDAEALQARLYTRYEDLAPDELPVPVKLVHLNKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++ + D ++ I + I +K+ + E N+D
Sbjct: 308 -LAPAKTLTAENAEKIGIDREQCLAHLNV---IRQHPEIREKLVTVFSQEREFAKENNVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LY F S D + I+R+ SP L +++ +K++E L+F YRAR++ TL+ E
Sbjct: 364 SQLYEGFFSPADRAAMEIIRTTSPDNLGSLDIQVADKRIEPLLFRYRARHYPHTLTDAEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLL--KKANEHDTKILNALLMY 776
+RW + R Y ++ N+ + L +E+L+ + +E IL ++ Y
Sbjct: 424 RRWAAH--CRDYFER----NLESYMLNLENLVHEHQTDEKKMAILKSVYHY 468
>gi|421746990|ref|ZP_16184743.1| DNA polymerase I, partial [Cupriavidus necator HPC(L)]
gi|409774428|gb|EKN56051.1| DNA polymerase I, partial [Cupriavidus necator HPC(L)]
Length = 302
Score = 301 bits (770), Expect = 2e-78, Method: Composition-based stats.
Identities = 140/271 (51%), Positives = 201/271 (74%), Gaps = 8/271 (2%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++ALPD+RN + P GA+YG I MLRKL +Y A Y AC+FDAKGK FR+
Sbjct: 11 VDGSSYLYRAYHALPDLRNGEGLPTGAIYGMINMLRKLRNDYPAEYSACVFDAKGKTFRD 70
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LYP+YK R MP +L QI IH+ V+A+GWPI+++ GVEADDVIG+LA QA T +
Sbjct: 71 ALYPAYKEHRPSMPDDLARQIEPIHEAVRALGWPIVVVDGVEADDVIGSLACQA-TAEGI 129
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
+ ++ST DKD+AQLV++ + L+N + ++ D ++++FGV PE+IVDY SLIGD DN+
Sbjct: 130 RTVVSTGDKDLAQLVNDSVTLVNTMSGEVLDPPGVVAKFGVPPERIVDYLSLIGDAVDNV 189
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV K+GPKTAVK L +Y +L+ I+ NA+ IKGV+G+NLR L WLP+ ++++T+K DCD
Sbjct: 190 PGVPKVGPKTAVKWLTEYGTLDGIMANADKIKGVVGENLRNTLEWLPRARELVTVKIDCD 249
Query: 1017 LTKNIVSIPESLILQP--KDEKLLMQLFNKY 1045
L++ IP+ L+ +D++ L+ F++Y
Sbjct: 250 LSE---PIPDFHALRDMGEDKEKLIAFFSRY 277
>gi|229529683|ref|ZP_04419073.1| exodeoxyribonuclease I [Vibrio cholerae 12129(1)]
gi|229333457|gb|EEN98943.1| exodeoxyribonuclease I [Vibrio cholerae 12129(1)]
Length = 478
Score = 301 bits (770), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 160/481 (33%), Positives = 267/481 (55%), Gaps = 18/481 (3%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
TF ++DYET+G+N +DRP QFA +RTD+ N I P+++YC+ D+LP P A LIT
Sbjct: 10 QPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALIT 69
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
ITPQ + G+ E +F + I P T S+GYN+I FDDE+TR+ +RN I+PY
Sbjct: 70 GITPQKANSQGLAEPEFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWS 129
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
W++ SRWDL++V++A + L P GI WP ++G SFKLEH+S N + H AHDA++DV
Sbjct: 130 WQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHISVANGIEHSNAHDAMADV 189
Query: 490 RATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549
AT+ LA+ ++ P+LF++ ++R K+ + I P +++ M + Y S +
Sbjct: 190 IATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIV 249
Query: 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRS 606
PI HP N+N +I +L DP+ L D ++ L + D +P+ ++HLN+
Sbjct: 250 PIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKC 309
Query: 607 PIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYKINNSDLE 663
PI ++ K L++ + D ++ I + I +K +F + N D
Sbjct: 310 PI-LAPAKTLTAENAQKIGIDREQCLAHLNV---IRQHPEIREKLVTVFSQEREFNQD-- 363
Query: 664 LNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
++D +LY F S D + I+R+ +P+ L ++ +K++E L+F YRAR++ TL+
Sbjct: 364 SDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADKRIEPLLFRYRARHYPHTLT 423
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGKIDGSS 783
E +RW + R Y ++ N+ + + +E+L+ + K+ +Y ++ +
Sbjct: 424 DAEQRRWAAH--CRDYFER----NLEGYMVNLENLVHEHQADPKKMAILKSVYHYVEKLA 477
Query: 784 C 784
C
Sbjct: 478 C 478
>gi|380511878|ref|ZP_09855285.1| exonuclease I [Xanthomonas sacchari NCPPB 4393]
Length = 479
Score = 301 bits (770), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 160/473 (33%), Positives = 256/473 (54%), Gaps = 11/473 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+FL+YD ETFG + RR R QFAA+RTD LN I+ PI + KPA D LP P A LIT I
Sbjct: 4 SFLFYDLETFGADPRRTRIAQFAAVRTDAELNVIEEPISFFVKPADDLLPSPVATLITGI 63
Query: 372 TPQFCLNNGIPEYK-FASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
PQ L G+ E + FA I E++ +P T ++GYN++ FDDE R +RN +PYEREW
Sbjct: 64 APQQALREGVSEAEAFARIAEQM-ARPQTCTLGYNSLRFDDEFVRHGLFRNFYDPYEREW 122
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+N SRWDL+++++ + L P GI WP + +G SFKLE L+ N + AH+ALSDV
Sbjct: 123 RNGNSRWDLLDMLRLMHALRPEGIVWPQREDGATSFKLEQLALANGVRDGDAHEALSDVY 182
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+G+AR R + PRL+ + L LR K++ + + +P +++ + + + + P
Sbjct: 183 ATIGMARHFRRSQPRLWEYALKLRDKRFCGSLLDAVAMQPVLHVSMRYPAARLCAAPVLP 242
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP + ++ ++L D + L +I D L + E IP+ +HLN++P
Sbjct: 243 LARHPRIDSRVLVFDLEGDIEPLLRYSPEQIADRLYTPQADLPEGEQRIPLKEVHLNKAP 302
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
+++ + ++ + L+ A K + +K+ + + + + D
Sbjct: 303 ALVAWAHLREADFA---RLRLDPAHLLTKAERLREAGPALAEKVRRVFASERAAVPADAD 359
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY+ F++ D +A +R+ P +L+ + F + +L EL+F YRARN+ ++LS E
Sbjct: 360 ASLYDGFLADGDKRTMAQVRATPPAQLAALEGQFRDPRLPELLFRYRARNWPQSLSIAEQ 419
Query: 728 KRWKKYRISRFYNKKN-NLYNINMFYLEIESLLKKANEHDTK--ILNALLMYG 777
RW YR R + N + FY E+ L + TK +L+ L +G
Sbjct: 420 SRWDDYRRQRLQQDSGLSELNFDTFYAELAGLRLAHPQDATKQALLDQLAAWG 472
>gi|377813367|ref|YP_005042616.1| DNA polymerase I [Burkholderia sp. YI23]
gi|357938171|gb|AET91729.1| DNA polymerase I [Burkholderia sp. YI23]
Length = 912
Score = 300 bits (769), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 141/270 (52%), Positives = 192/270 (71%), Gaps = 3/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A+PD+R D P GALYG I MLR+L + A Y AC+FDAKGK FR+
Sbjct: 15 VDGSSYLYRAYHAMPDLRGPDGGPTGALYGMINMLRRLRREVNAEYSACVFDAKGKTFRD 74
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
Y YKA R MP +L QI IH V+A+GWP+++I+ VEADDVIGTLA QA K +
Sbjct: 75 DWYAEYKANRPSMPEDLSKQIEPIHVAVRALGWPLVMIERVEADDVIGTLAVQA-EKRGM 133
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
KVI+ST DKD+AQLV++ + LIN N+ DR ++++FGV PE+IVDY SLIGD DN+
Sbjct: 134 KVIVSTGDKDLAQLVTDHVTLINTMTNETLDRAGVLTKFGVPPERIVDYLSLIGDTVDNV 193
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K GPKTA+K L Q+ +L+ I+ +A IKG +G NLR AL++LP KK++T+ T+CD
Sbjct: 194 PGVEKCGPKTAIKWLTQFETLDGIVEHAGEIKGAVGDNLRKALDFLPMAKKLVTVHTECD 253
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L I SI +L +P+ + L +F ++
Sbjct: 254 LASQIESIEGTLASRPEAREELRDVFLRHG 283
>gi|384418798|ref|YP_005628158.1| exodeoxyribonuclease I [Xanthomonas oryzae pv. oryzicola BLS256]
gi|353461711|gb|AEQ95990.1| exodeoxyribonuclease I [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 481
Score = 300 bits (768), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 162/475 (34%), Positives = 261/475 (54%), Gaps = 13/475 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+FL+YD ETFG + RR R QFAA+RTD L I+ PI + +PA D LP P A ++T I
Sbjct: 4 SFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTGI 63
Query: 372 TPQFCLNNGIPEYK-FASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
TPQ L G+ E + FA I E++ +P T ++GYN+I FDDE R +RN +PYEREW
Sbjct: 64 TPQHALREGVTEAEAFARIAEQMS-RPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYEREW 122
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDL++V++ + L P GI WP + +G SFKLEHL+ N + AH+ALSDV
Sbjct: 123 RGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLASANGVREGDAHEALSDVY 182
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+G+AR + + P+L+++ L LR K++ + + +P +I+ + + + + P
Sbjct: 183 ATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIVMQPVLHISQRYPASRLCAAAVLP 242
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP + +I ++L DP L ++I D L + E IP+ +HLN+SP
Sbjct: 243 LTRHPRIDSRVIVFDLEGDPDVLLRLSPDEIADRLYSRAADLPEGERRIPLKEVHLNKSP 302
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL--N 665
+++ + +++ R D + K A + +K+ Y + +
Sbjct: 303 ALVAWQHLRAADFE-RLGVDRDAVLA--KAARLHEMGPELAEKVRQVYGSERAPAAATND 359
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
D LY+ F+++ D LA +R+ +P +L + F + +L EL+F YRARN+ +TLS++
Sbjct: 360 ADASLYDGFLAEGDKRLLAQVRTSAPAELGALESRFRDPRLIELLFRYRARNWPQTLSFE 419
Query: 726 ELKRWKKYRISRFYNKKN-NLYNINMFYLEIESLLKKANEHDTK--ILNALLMYG 777
E +RW YR R + + + +I L + + TK +L+ L +G
Sbjct: 420 EQERWNAYRRQRLLEDRGLGEVTLEQYNAQIVDLRRAHPDDATKQALLDQLAAWG 474
>gi|325921108|ref|ZP_08182979.1| Exodeoxyribonuclease I subunit C [Xanthomonas gardneri ATCC 19865]
gi|325548380|gb|EGD19363.1| Exodeoxyribonuclease I subunit C [Xanthomonas gardneri ATCC 19865]
Length = 481
Score = 300 bits (768), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 164/475 (34%), Positives = 260/475 (54%), Gaps = 13/475 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+FL+YD ETFG + RR R QFAA+RTD L I+ PI Y +PA D LP P A ++T I
Sbjct: 4 SFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFYVQPADDLLPSPYATMVTGI 63
Query: 372 TPQFCLNNGIPEYK-FASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
TPQ L G+ E + FA I E++ +P T ++GYN+I FDDE R +RN +PYEREW
Sbjct: 64 TPQHALREGVSEAEAFARISEQMS-RPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYEREW 122
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDL++V++ + L P GI WP + +G SFKLEHL+ N + AH+ALSDV
Sbjct: 123 RGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANAVREGDAHEALSDVY 182
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+G+AR + + P+L+ + L LR K++ + +P +I+ + + + + P
Sbjct: 183 ATIGMARRFQQHQPKLWEYALRLRDKRFAATLLDVIAMQPVLHISQRYPAARMCAAAVLP 242
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP + +I ++L DP+ L ++I D L + E IP+ +HLN+SP
Sbjct: 243 LTRHPRIDSRVIVFDLDGDPEVLLRLSPDEIADRLYIRAADLPEGEQRIPLKEVHLNKSP 302
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL--N 665
+++ + ++ R D + K A + +K+ Y + +
Sbjct: 303 ALVAWQHLREADFQ-RLGIDHDAVLA--KAARLRELGPELAEKVRQVYGNERAAAPAVND 359
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
D LY+ F+++ D LA +R+ +P +L + F + +L EL+F YRARN+ +TLS++
Sbjct: 360 ADASLYDGFLAEGDKRLLAQVRASAPAELGALESRFRDPRLIELLFRYRARNWPQTLSFE 419
Query: 726 ELKRWKKYRISRFYNKKN-NLYNINMFYLEIESLLKKANEHDTK--ILNALLMYG 777
E +RW YR R + ++ F+ +I L + TK +L+ L +G
Sbjct: 420 EQERWNVYRRQRLLEDRGLGEVTLDQFHAQIADLRLAHPDDATKQALLDQLAAWG 474
>gi|384427484|ref|YP_005636843.1| exodeoxyribonuclease I [Xanthomonas campestris pv. raphani 756C]
gi|341936586|gb|AEL06725.1| exodeoxyribonuclease I [Xanthomonas campestris pv. raphani 756C]
Length = 481
Score = 300 bits (768), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 162/475 (34%), Positives = 258/475 (54%), Gaps = 13/475 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+FL+YD ETFG + RR R QFAA+RTD L I+ PI + +PA D LP P A ++T I
Sbjct: 4 SFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTGI 63
Query: 372 TPQFCLNNGIPEYK-FASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
TPQ L G+ E + FA I E++ +P T ++GYN+I FDDE R +RN +PYEREW
Sbjct: 64 TPQHALREGVNEAEAFARIAEQMG-RPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYEREW 122
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDL++V++ + L P GI WP + +G SFKLEHL+ N + AH+ALSDV
Sbjct: 123 RGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANAVREGDAHEALSDVY 182
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+G+AR + + P+L+++ L LR K++ + + +P +I+ + + + + P
Sbjct: 183 ATIGMARKFQQSQPKLWDYALRLRDKRFAASLLDVIAMQPVLHISQRYPATRLCAAAVLP 242
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP + +I ++L DP L ++I D L + E IP+ +HLN++P
Sbjct: 243 LTRHPRIDSRVIVFDLDGDPDALLRLSPDEIADRLYIRAADLPEGEQRIPLKEVHLNKAP 302
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL--N 665
+++ + S + + ++ A K A + +K+ Y + +
Sbjct: 303 ALVAWQHLRSDDFQ---RLGVDRAAVEAKAARLRELGPELAEKVRQVYGAERAGAAAVND 359
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
D LY+ F+++ D L +RS +P +L + F + +L EL+F YRARN+ +TL
Sbjct: 360 ADASLYDGFLAEGDKRLLTQVRSSAPAELGALEARFRDPRLIELLFRYRARNWPQTLPPH 419
Query: 726 ELKRWKKYRISRFYNKKN-NLYNINMFYLEIESLLKKANEHDTK--ILNALLMYG 777
E +RW YR R + + FY +I L ++ TK +L+ L +G
Sbjct: 420 EHQRWNDYRRQRLLEDRGLGEVTLEQFYAQIADLRLAHSDDATKQSLLDQLAAWG 474
>gi|419825728|ref|ZP_14349232.1| exonuclease family protein [Vibrio cholerae CP1033(6)]
gi|408609809|gb|EKK83185.1| exonuclease family protein [Vibrio cholerae CP1033(6)]
Length = 474
Score = 300 bits (767), Expect = 5e-78, Method: Composition-based stats.
Identities = 160/471 (33%), Positives = 265/471 (56%), Gaps = 16/471 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYET+G+N +DRP QFA +RTD+ N I P+++YC+ D+LP P A LIT I
Sbjct: 8 TFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G+ E +F + I P TI++GYN+I FDDE+TR+ +RN I+PY W+
Sbjct: 68 TPQKANSQGLAEPEFIARIHAELSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
+ SRWDL++V++A + L P GI WP ++G SFKLEHLS N + H AHDA++DV A
Sbjct: 128 HGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+ ++ P+LF++ ++R K+ + I P +++ M + Y S + PI
Sbjct: 188 TIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVPI 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L DP+ L D ++ L + D +P+ ++HLN+ PI
Sbjct: 248 AWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++ + D ++ I + I +K+ + + E ++D
Sbjct: 308 -LAPAKTLTAENAQKIGIDREQCLAHLNV---IRQHPEIREKLVTVFSQEREFNQESDVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LY F D + I+R+ +P+ L ++ +K++E L+F YRAR++ TL+ E
Sbjct: 364 SQLYAGFSPPADRAAMEIIRTTAPENLGSLAIRVADKRIEPLLFRYRARHYPHTLTDTEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLL--KKANEHDTKILNALLMY 776
+RW + R Y ++ N+ + L +E+L+ +A+ IL ++ Y
Sbjct: 424 RRWAAH--CRDYFER----NLEGYMLNLENLVHEHQADPKKMAILKSVYHY 468
>gi|400405493|ref|YP_006588352.1| exonuclease I [secondary endosymbiont of Ctenarytaina eucalypti]
gi|400363856|gb|AFP84924.1| exonuclease I [secondary endosymbiont of Ctenarytaina eucalypti]
Length = 473
Score = 299 bits (766), Expect = 6e-78, Method: Composition-based stats.
Identities = 167/474 (35%), Positives = 267/474 (56%), Gaps = 16/474 (3%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFL +DYETFG + DRP QFA+IRTD T+D P +L+C+PA D+LP+P A L+T I
Sbjct: 9 TFLVHDYETFGTHPALDRPAQFASIRTDSQFKTLDKPKILFCRPANDYLPEPEAVLMTGI 68
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L +G+ E +FA I +F GT +GYN + FDDEITR +F+RN +PY WK
Sbjct: 69 TPQKALQDGVTEAEFARCIYLLFNVAGTCILGYNNVCFDDEITRNLFFRNFYDPYGWSWK 128
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
+ SRWD++NV++A Y L P G+ WP G PSF+L+HL+ NN+ H AHDA++DV A
Sbjct: 129 HGNSRWDILNVVRACYALRPEGVAWPLNTEGLPSFRLKHLTRANNIEHTNAHDAMTDVYA 188
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
TL +A+LIR P+LFN++ R K + I P +++ +F + + + P+
Sbjct: 189 TLEVAKLIRLAQPKLFNYLYRHRGKHQLKKLINIRQMTPLVHVSGLFGAARGNTAWIAPL 248
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIV 609
HP N N LI +L D + + +R L ++ + +P+ ++HLN+ P++
Sbjct: 249 AWHPNNPNALIVCDLSGDTRALADCNSEMLRTRLYTRRAELGSNPAVPLQLVHLNKCPVL 308
Query: 610 --ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDL-ELNI 666
+ L+ + + + ++ +C ++ + + + KK+ + N S + N+
Sbjct: 309 APANTLRRIDAERLGIHR--EHC----LETLQWLKSRPEVKKKVISIFSENTSFISSSNV 362
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
D LY+ F S D ++IL++ SP+ L +++ + +L L+F YRARNF TL++ E
Sbjct: 363 DTTLYDGFFSDADYAMMSILQTTSPEHLHSLDLSCVDPRLTPLLFRYRARNFPHTLNHDE 422
Query: 727 LKRWKKYRISRFYNKKNNLYNINMFYL-EIESLLKKANEHDTKILNALLMYGKI 779
RW ++R + ++ Y + L +I S N ++L AL Y +I
Sbjct: 423 QLRWLEHRKTLLTEQRRKDYVKELVRLYQIHS----RNVKKAQLLRALFDYLEI 472
>gi|386719114|ref|YP_006185440.1| Exodeoxyribonuclease I [Stenotrophomonas maltophilia D457]
gi|384078676|emb|CCH13269.1| Exodeoxyribonuclease I [Stenotrophomonas maltophilia D457]
Length = 479
Score = 299 bits (765), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 154/429 (35%), Positives = 238/429 (55%), Gaps = 6/429 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+FL+YD ETFG + RR R Q+AAIRTD LN ID P+ + +PA D LP P A L+T I
Sbjct: 4 SFLFYDLETFGQDPRRTRISQYAAIRTDADLNEIDTPVSFFVRPADDLLPSPMATLVTGI 63
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L GI E + I + +PGT +GYNT+ FDDE R+ +RN +PYEREW+
Sbjct: 64 TPQQALAEGISEAEAFDRINEQLSRPGTCVLGYNTLRFDDEFVRYGLFRNFHDPYEREWR 123
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++ + P GI WP + +G SFKLEHL+ NN+ AH+ALSDVRA
Sbjct: 124 NGNSRWDLLDMLRLMRAMRPDGIQWPLREDGATSFKLEHLAEANNVREGDAHEALSDVRA 183
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+G+ARL + + PRL+ + L LR K++V + +P +I+ + + + + P+
Sbjct: 184 TIGMARLFKQSQPRLWEYALKLRDKRFVGGLLDVAAMKPVLHISMRYPASRLCAAPVLPL 243
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
+HP N +I ++L + L I L + + E +P+ +HLN+ P
Sbjct: 244 AVHPTINNRVIVFDLEGEIDDLLELPAEVIAQRLYLRASELPEGVARVPLKEVHLNKVPA 303
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
+I+ + + + + L+ A K + +K Y ++D
Sbjct: 304 LIAWNHLRADD---HARLGLDVAAIEAKVERLRAFAPQLAEKARQVYNQPRVATVADVDA 360
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
LY+ F+ D LA+ R+ +P++L+ + F + +L EL+F YRARN ++L+ E +
Sbjct: 361 SLYDGFLGNGDKPLLALARTTAPEQLAALEGRFRDPRLPELLFRYRARNHPDSLAPAERQ 420
Query: 729 RWKKYRISR 737
RW+ YR R
Sbjct: 421 RWQDYRRQR 429
>gi|313200166|ref|YP_004038824.1| DNA polymerase i [Methylovorus sp. MP688]
gi|312439482|gb|ADQ83588.1| DNA polymerase I [Methylovorus sp. MP688]
Length = 918
Score = 299 bits (765), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 138/276 (50%), Positives = 198/276 (71%), Gaps = 13/276 (4%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRAF+A+PD+RN N P GA+ G + MLR+L+K+Y A Y AC+FDAKGK FR+
Sbjct: 7 VDGSSYLYRAFHAMPDLRNKQNEPTGAIQGVLNMLRRLHKDYPADYSACVFDAKGKTFRD 66
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
+YP YKA R MP +L LQI +H ++A+GWP+++ GVEADDVIG LAKQA + +
Sbjct: 67 DIYPEYKANRASMPDDLRLQIEPLHTAIQAMGWPLIVEDGVEADDVIGALAKQA-EREGM 125
Query: 899 KVIISTNDKDMAQLVSNKIALIN--------NNKIHDRTTIISRFGVSPEKIVDYFSLIG 950
+VIIST DKD++QLV+ I ++N +++ D + ++FGV P +VDY LIG
Sbjct: 126 RVIISTGDKDISQLVNEHITVVNTMRDAFRKTDEVLDPAGVEAKFGVPPSLMVDYLILIG 185
Query: 951 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 1010
D SDN+PGV+K+GPKTAVK L QY SLENI+ NA+ I GV+G+NLR AL WLP ++++T
Sbjct: 186 DSSDNVPGVEKVGPKTAVKWLTQYGSLENIVANADQITGVVGENLRKALPWLPTARELIT 245
Query: 1011 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
I+ D + +++ E L +P+D + L++LF+++
Sbjct: 246 IRCDVGIQESL----EDLAPRPQDREKLIELFDRFE 277
>gi|58426647|gb|AAW75684.1| exodeoxyribonuclease I [Xanthomonas oryzae pv. oryzae KACC 10331]
Length = 502
Score = 298 bits (764), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 162/475 (34%), Positives = 260/475 (54%), Gaps = 13/475 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+FL+YD ETFG + RR R QFAA+RTD L I+ PI + +PA D LP P A ++T I
Sbjct: 25 SFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTAI 84
Query: 372 TPQFCLNNGIPEYK-FASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
TPQ L G+ E + FA I E++ +P T ++GYN+I FDDE R +RN +PYEREW
Sbjct: 85 TPQHALREGVTEAEAFARIAEQMS-RPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYEREW 143
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDL++V++ + L P GI WP + +G SFKLEHL+ N++ AH+ALSDV
Sbjct: 144 RGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLASANDVREGDAHEALSDVY 203
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+G+AR + + P+L+++ L LR K++ + +P +I+ + + + + P
Sbjct: 204 ATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAVLP 263
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP + +I ++L DP L ++I D L + E IP+ +HLN+SP
Sbjct: 264 LTRHPRIDSRVIVFDLEGDPDVLLRLSPDEIADRLYIRAADLPEGERRIPLKEVHLNKSP 323
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL--N 665
+++ + +++ R D + K A + +K+ Y + +
Sbjct: 324 ALVAWQHLRAADFE-RLGVDQDAVLA--KAARMRELGPELAEKVRQVYGSERAPAAATND 380
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
D LY+ F+++ D LA +R+ +P +L + F + +L EL+F YRARN+ +TLS+
Sbjct: 381 ADASLYDGFLAEGDKRLLAQVRTSAPAELCALESRFRDPRLIELLFRYRARNWPQTLSFD 440
Query: 726 ELKRWKKYRISRFYNKKN-NLYNINMFYLEIESLLKKANEHDTK--ILNALLMYG 777
E +RW YR R + + + +I L + + TK +L+ L +G
Sbjct: 441 EQERWNAYRRQRLLEDRGLGEVTLEQYNAQIVDLRRAHPDDATKQALLDQLAAWG 495
>gi|319942625|ref|ZP_08016933.1| hypothetical protein HMPREF9464_02152 [Sutterella wadsworthensis
3_1_45B]
gi|319803804|gb|EFW00736.1| hypothetical protein HMPREF9464_02152 [Sutterella wadsworthensis
3_1_45B]
Length = 502
Score = 298 bits (764), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 166/496 (33%), Positives = 262/496 (52%), Gaps = 29/496 (5%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTI--DNPIMLYCKPAPDFLPDPRACL 367
+TF WYDYETFG++ R+DRP QFA RT + + + D + YC+P D LP+P +CL
Sbjct: 7 ETTFYWYDYETFGVDPRKDRPAQFAGRRTRLDFSPLSGDTGEIFYCRPTEDQLPNPESCL 66
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
+T ITPQ+C G+ E +FA +I + PGT+S+GYNT+ FDDE+ RF+FWRN ++PY
Sbjct: 67 LTGITPQYCAEKGVCESEFADLIWERLNTPGTVSIGYNTLGFDDEVNRFLFWRNFLDPYT 126
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKP------------SFKLEHLSFVN 475
W CSRWDL V+ A + L I WP P FKLE L+ N
Sbjct: 127 HSWAKGCSRWDLFPVVCAAWALRGDTIKWPRWEEIDPIKYPKAEGRKGVCFKLEFLTKAN 186
Query: 476 NLSHKKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYIT 535
+ H AHDALSDV AT+G+A+L+ P+L+ + R V A + +P ++T
Sbjct: 187 GIEHGHAHDALSDVEATIGMAKLLAEREPKLWRWAFENRTTAKVSAAVA--DMKPVVWVT 244
Query: 536 HMFSSKHSYISLMWPICIHPMNKNILITWNLLHDPK--KFLLNDINKIRDYLCFKKNSFK 593
F + C K+ W+L DP + L + K R + K+ +
Sbjct: 245 PKFGIARGCTGIA--ACFF-QEKHDCWMWDLSFDPTVLQSLSYEEIKQRLFPSIKERAQG 301
Query: 594 -EDIPISMIHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTY-IWKKI 651
E +PI + N SP V +NLKVLS +Y DL+ A N++ ++ I+ ++
Sbjct: 302 IERLPIRRLKANASPFVCANLKVLSRERAQKYGIDLDVAAANLQKLKAVAPAVQTIFAEL 361
Query: 652 FLDYKINNSDL-ELNIDEELYNNFISKKDNLKLAILRSMSPKKLS--NVNFCFENKKLEE 708
+ + N++ + D LY+ F S D + +RSM P+ L+ F F+++K E
Sbjct: 362 AAERRSNDAAAPSADPDRSLYSGFASSGDKARFVQIRSMMPEHLAAEAPKFRFDDQKFAE 421
Query: 709 LIFLYRARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKA---NEH 765
++F +RARN+ E LS +E +RW+++ R + ++ + ++ ++ +I+ +E
Sbjct: 422 MLFRFRARNWPEMLSAEETERWRQFCADRIMSGRDGMLQLSDYFDQIDEAQASGLYDDER 481
Query: 766 DTKILNALLMYGKIDG 781
++L AL +G+ G
Sbjct: 482 HQQVLEALYDWGETLG 497
>gi|87121491|ref|ZP_01077380.1| exodeoxyribonuclease I [Marinomonas sp. MED121]
gi|86163334|gb|EAQ64610.1| exodeoxyribonuclease I [Marinomonas sp. MED121]
Length = 457
Score = 298 bits (764), Expect = 1e-77, Method: Composition-based stats.
Identities = 144/412 (34%), Positives = 245/412 (59%), Gaps = 6/412 (1%)
Query: 332 QFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKITPQFCLNNGIPEYKFASIIE 391
QFA IRTD+ N I PIM+YC+ A D LP P ACL+T I+PQ G PE +F ++IE
Sbjct: 2 QFAGIRTDLEFNQIGEPIMIYCQLAEDVLPHPDACLLTGISPQDANREGYPETEFMAMIE 61
Query: 392 KIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSP 451
K F PGT ++GYN+I FDDE+ RF F+RN I+PY REW+N CSRWD+I++++ Y + P
Sbjct: 62 KEFATPGTCALGYNSIRFDDEVVRFGFYRNFIDPYAREWQNACSRWDIIDLVRMCYAIRP 121
Query: 452 YGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRATLGLARLIRNNNPRLFNFIL 511
GI WP +G+ S KLE L+ N+++H++AHDALSDV T+ +A+LI+ P+L+++
Sbjct: 122 EGINWPKNEDGQVSLKLEDLTKANDIAHEQAHDALSDVYGTIEMAKLIKQKQPKLYDYYF 181
Query: 512 SLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPICIHPMNKNILITWNLLHDPK 571
+R+K + I +PF +++ MF + +Y + + PI HP NKN +I ++L+ D +
Sbjct: 182 KMREKGELQKFIDPYRMKPFLHVSGMFGAIKNYAAFVAPIAPHPTNKNGVILFDLMQDAQ 241
Query: 572 KFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIVISNLKVLSSNLMFRYKFDLN 629
+ +++IR + K + + +P+ +H NRSP V + ++++ R D
Sbjct: 242 PLIDLSVDEIRHRVFSTKEALGDTPRLPLKTLHYNRSPAVAPATFLKDTSVVSRLNLDGE 301
Query: 630 CAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDEELYN-NFISKKDNLKLAILRS 688
+N+ S ++F+ ++ ++ + D LY+ F S++D ++ +R
Sbjct: 302 ICRQNLAILKSYPELANKMSQVFMQ---SHEKIDKDPDVMLYSGGFFSREDKARMEEIRQ 358
Query: 689 MSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKRWKKYRISRFYN 740
LS ++ F++++L E++ Y RN+ E L+ + + W++YR ++ +
Sbjct: 359 TPLNALSELSLSFDDRRLPEMLMRYIGRNYPEQLTSTQRQEWEEYRQAKLLD 410
>gi|91774714|ref|YP_544470.1| DNA polymerase I [Methylobacillus flagellatus KT]
gi|91708701|gb|ABE48629.1| DNA polymerase I [Methylobacillus flagellatus KT]
Length = 910
Score = 298 bits (763), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 140/270 (51%), Positives = 192/270 (71%), Gaps = 7/270 (2%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRAF+ALPD+RN P GA+YG + MLR+L+K+Y A Y AC+FDAKGK FR+
Sbjct: 7 VDGSSYLYRAFHALPDLRNKAGEPTGAMYGVLNMLRRLHKDYPADYSACVFDAKGKTFRD 66
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
+YP YKA R MP +L QI +H+ ++A+GWP+L+I GVEADDVIG LA+QA + +
Sbjct: 67 DIYPDYKAHRPPMPDDLSRQIEPLHEAIRAMGWPLLMIDGVEADDVIGCLAQQAEAQ-GM 125
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
+V+IST DKDMAQLV+ I L+N N+I D + ++FG+ P I+DY +LIGD DN+
Sbjct: 126 QVVISTGDKDMAQLVTPHIKLVNTMTNEILDEAGVEAKFGIPPSLIIDYLTLIGDSVDNV 185
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV+K+GPKTAVK L Q+ SL+NII NA NI GV+G NLR AL+WLP ++++ I+ D
Sbjct: 186 PGVEKVGPKTAVKWLTQHGSLDNIIANAANIGGVVGNNLRKALDWLPTGRELIKIRCRLD 245
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
L + L+ QP D L +L+ ++
Sbjct: 246 LPHMVT----ELVTQPADNAKLAELYERFE 271
>gi|84623964|ref|YP_451336.1| exonuclease I [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|161898991|ref|YP_201069.2| exonuclease I [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|84367904|dbj|BAE69062.1| exodeoxyribonuclease I [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 481
Score = 298 bits (763), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 162/475 (34%), Positives = 260/475 (54%), Gaps = 13/475 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+FL+YD ETFG + RR R QFAA+RTD L I+ PI + +PA D LP P A ++T I
Sbjct: 4 SFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTAI 63
Query: 372 TPQFCLNNGIPEYK-FASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
TPQ L G+ E + FA I E++ +P T ++GYN+I FDDE R +RN +PYEREW
Sbjct: 64 TPQHALREGVTEAEAFARIAEQMS-RPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYEREW 122
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDL++V++ + L P GI WP + +G SFKLEHL+ N++ AH+ALSDV
Sbjct: 123 RGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLASANDVREGDAHEALSDVY 182
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+G+AR + + P+L+++ L LR K++ + +P +I+ + + + + P
Sbjct: 183 ATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAVLP 242
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP + +I ++L DP L ++I D L + E IP+ +HLN+SP
Sbjct: 243 LTRHPRIDSRVIVFDLEGDPDVLLRLSPDEIADRLYIRAADLPEGERRIPLKEVHLNKSP 302
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL--N 665
+++ + +++ R D + K A + +K+ Y + +
Sbjct: 303 ALVAWQHLRAADFE-RLGVDQDAVLA--KAARMRELGPELAEKVRQVYGSERAPAAATND 359
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
D LY+ F+++ D LA +R+ +P +L + F + +L EL+F YRARN+ +TLS+
Sbjct: 360 ADASLYDGFLAEGDKRLLAQVRTSAPAELCALESRFRDPRLIELLFRYRARNWPQTLSFD 419
Query: 726 ELKRWKKYRISRFYNKKN-NLYNINMFYLEIESLLKKANEHDTK--ILNALLMYG 777
E +RW YR R + + + +I L + + TK +L+ L +G
Sbjct: 420 EQERWNAYRRQRLLEDRGLGEVTLEQYNAQIVDLRRAHPDDATKQALLDQLAAWG 474
>gi|188576332|ref|YP_001913261.1| exonuclease I [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188520784|gb|ACD58729.1| exodeoxyribonuclease I [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 481
Score = 298 bits (763), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 162/475 (34%), Positives = 260/475 (54%), Gaps = 13/475 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+FL+YD ETFG + RR R QFAA+RTD L I+ PI + +PA D LP P A ++T I
Sbjct: 4 SFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTGI 63
Query: 372 TPQFCLNNGIPEYK-FASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
TPQ L G+ E + FA I E++ +P T ++GYN+I FDDE R +RN +PYEREW
Sbjct: 64 TPQHALREGVTEAEAFARIAEQMS-RPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYEREW 122
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDL++V++ + L P GI WP + +G SFKLEHL+ N++ AH+ALSDV
Sbjct: 123 RGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLASANDVREGDAHEALSDVY 182
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+G+AR + + P+L+++ L LR K++ + +P +I+ + + + + P
Sbjct: 183 ATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAVLP 242
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP + +I ++L DP L ++I D L + E IP+ +HLN+SP
Sbjct: 243 LTRHPRIDSRVIVFDLEGDPDVLLRLSPDEIADRLYIRAADLPEGERRIPLKEVHLNKSP 302
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL--N 665
+++ + +++ R D + K A + +K+ Y + +
Sbjct: 303 ALVAWQHLRAADFE-RLGVDQDAVLA--KAARMRELGPELAEKVRQVYGSERAPAAATND 359
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
D LY+ F+++ D LA +R+ +P +L + F + +L EL+F YRARN+ +TLS+
Sbjct: 360 ADASLYDGFLAEGDKRLLAQVRTSAPAELCALESRFRDPRLIELLFRYRARNWPQTLSFD 419
Query: 726 ELKRWKKYRISRFYNKKN-NLYNINMFYLEIESLLKKANEHDTK--ILNALLMYG 777
E +RW YR R + + + +I L + + TK +L+ L +G
Sbjct: 420 EQERWNAYRRQRLLEDRGLGEVTLEQYNAQIVDLRRAHPDDATKQALLDQLAAWG 474
>gi|171464028|ref|YP_001798141.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius
STIR1]
gi|171193566|gb|ACB44527.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius
STIR1]
Length = 942
Score = 298 bits (763), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 139/269 (51%), Positives = 196/269 (72%), Gaps = 4/269 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRAF+A+PD+RN P GA+YG + M+R+ +A +IAC+FDAKGK FR+
Sbjct: 9 VDGSSYLYRAFHAMPDLRNGAGEPTGAIYGMVNMMRRTRSELKADHIACVFDAKGKTFRD 68
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
+Y YKA R MP +L+ QI IH MVKA+GWP+L++ GVEADDVIGTLA QA T+
Sbjct: 69 EMYSEYKAHRSPMPEDLVKQIEPIHAMVKALGWPVLMVGGVEADDVIGTLACQA-TQAGW 127
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
+ IIST+DKD+AQLV++ + LIN N+ D + +FGV PE IVDY S+IGD DN+
Sbjct: 128 ETIISTDDKDLAQLVNSSVTLINTMTNEKLDIEGVKEKFGVPPELIVDYLSIIGDAVDNV 187
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV K GPKTA K L ++ SL+N++ NA+ +KGV+G+NLR +L+WLP+ +++T+KTDCD
Sbjct: 188 PGVPKAGPKTANKWLAEFGSLDNLMANADQVKGVVGENLRASLDWLPQAHQLITVKTDCD 247
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKY 1045
L+ ++ + + L + +D LL +LF +Y
Sbjct: 248 LSPHLPGL-DDLHAKSEDAPLLRELFERY 275
>gi|423016455|ref|ZP_17007176.1| DNA polymerase I [Achromobacter xylosoxidans AXX-A]
gi|338780532|gb|EGP44939.1| DNA polymerase I [Achromobacter xylosoxidans AXX-A]
Length = 905
Score = 298 bits (762), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 132/270 (48%), Positives = 193/270 (71%), Gaps = 4/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRAF+A+PD+RN P GALYG + MLRKL +Y+A Y ACIFDA+GK FR+
Sbjct: 8 VDGSSYLYRAFHAMPDLRNAQGEPTGALYGVVNMLRKLVSDYKAEYAACIFDARGKTFRD 67
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LYP YK+ R MP +L QI IH+ V+A+GWP+L I+GVEADDVIGTLA +A + +
Sbjct: 68 DLYPEYKSHRPPMPEDLAAQIEPIHRAVRALGWPVLAIEGVEADDVIGTLACRAAER-GV 126
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
++ST DKD+AQLV++ + L+N + ++ D ++++FGV P++IVDY L+GD DN+
Sbjct: 127 HTVVSTGDKDLAQLVNSHVTLVNTMSGEVLDEAGVVNKFGVPPDRIVDYLMLVGDTVDNV 186
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV K+GPKTA K ++++ S++ ++ A IKGV G NLR A+ P +++LT+K DCD
Sbjct: 187 PGVTKVGPKTAAKWISEFGSIDKLVEGAEGIKGVAGSNLREAIPNFPLTRQLLTVKCDCD 246
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
LT ++ S+ + L + +DE L +L+ +Y
Sbjct: 247 LTGHVESV-DDLTPRGRDEATLTELYERYG 275
>gi|253998100|ref|YP_003050163.1| DNA polymerase I [Methylovorus glucosetrophus SIP3-4]
gi|253984779|gb|ACT49636.1| DNA polymerase I [Methylovorus glucosetrophus SIP3-4]
Length = 918
Score = 298 bits (762), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 138/276 (50%), Positives = 198/276 (71%), Gaps = 13/276 (4%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRAF+A+PD+RN N P GA+ G + MLR+L+K+Y A Y AC+FDAKGK FR+
Sbjct: 7 VDGSSYLYRAFHAMPDLRNKQNEPTGAIQGVLNMLRRLHKDYPADYSACVFDAKGKTFRD 66
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
+YP YKA R MP +L LQI +H ++A+GWP+++ GVEADDVIG LAKQA + +
Sbjct: 67 DIYPEYKANRASMPDDLRLQIEPLHTAIQAMGWPLIVEDGVEADDVIGALAKQA-EREGM 125
Query: 899 KVIISTNDKDMAQLVSNKIALIN--------NNKIHDRTTIISRFGVSPEKIVDYFSLIG 950
+VIIST DKD++QLV+ I ++N +++ D + ++FGV P +VDY LIG
Sbjct: 126 RVIISTGDKDISQLVNEHITVVNTMRDAFRKTDEVLDPAGVEAKFGVPPSLMVDYLILIG 185
Query: 951 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILT 1010
D SDN+PGV+K+GPKTAVK L QY SLENII +A+ I GV+G+NLR AL WLP ++++T
Sbjct: 186 DSSDNVPGVEKVGPKTAVKWLTQYGSLENIIAHADQITGVVGENLRKALPWLPTARELIT 245
Query: 1011 IKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
I+ D + +++ E L +P+D + L++LF+++
Sbjct: 246 IRCDVGIQESL----EDLAPRPQDREKLIELFDRFE 277
>gi|145589891|ref|YP_001156488.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
gi|145048297|gb|ABP34924.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
Length = 943
Score = 297 bits (761), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 139/269 (51%), Positives = 195/269 (72%), Gaps = 4/269 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRAF+A+PD+RN P GA+YG + M+R+ +A +IAC+FDAKGK FR+
Sbjct: 9 VDGSSYLYRAFHAMPDLRNGAGEPTGAIYGMVNMMRRARSELKADHIACVFDAKGKTFRD 68
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
+Y YKA R MP +L+ QI IH MVKA+GWP+L++ GVEADDVIGTLA QA T+
Sbjct: 69 EMYSEYKAHRSPMPEDLVKQIEPIHAMVKAMGWPVLMVSGVEADDVIGTLACQA-TEAGW 127
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
+ IIST DKD+AQLV+ + LIN N+ D +I +FGV PE IVDY S+IGD DN+
Sbjct: 128 ETIISTGDKDLAQLVNPSVTLINTMTNEKLDIEGVIEKFGVPPELIVDYLSIIGDTVDNV 187
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV K GPKTA K L ++ +L+N++ NA+ +KGV+G+NLR +L WLP+ ++++T+KTDCD
Sbjct: 188 PGVPKAGPKTANKWLAEFGNLDNLMANADQVKGVVGENLRASLTWLPQARQLITVKTDCD 247
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKY 1045
L+ ++ + + L + +D LL +LF +Y
Sbjct: 248 LSPHLPGL-DDLHEKSEDAALLRELFERY 275
>gi|408821504|ref|ZP_11206394.1| exonuclease I [Pseudomonas geniculata N1]
Length = 479
Score = 297 bits (760), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 155/429 (36%), Positives = 240/429 (55%), Gaps = 6/429 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+FL+YD ETFG + RR R Q+AAIRTD LN ID P+ + +PA D LP P A L+T I
Sbjct: 4 SFLFYDLETFGQDPRRTRISQYAAIRTDADLNEIDTPVSFFVRPADDLLPSPMATLVTGI 63
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L GI E + I + +PGT ++GYNT+ FDDE R+ +RN +PYEREW+
Sbjct: 64 TPQQALAEGISEAEAFDRINEQLSRPGTCALGYNTLRFDDEFVRYGLFRNFHDPYEREWR 123
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++ + P GI WP + +G SFKLEHL+ NN+ AH+ALSDVRA
Sbjct: 124 NGNSRWDLLDMLRLMRAMRPDGIQWPLREDGATSFKLEHLAEANNVREGDAHEALSDVRA 183
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+G+ARL + + PRL+ + L LR K++V + + +P +I+ + + + + P+
Sbjct: 184 TIGMARLFKQSQPRLWEYALKLRDKRFVGSLLDVTAMKPVLHISMRYPASRLCAAPVLPL 243
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
+HP N +I ++L D L I L + + E +P+ +HLN+ P
Sbjct: 244 AVHPTISNRVIVFDLDGDIDDLLALPAEVIAQRLYMRASELPEGAARVPLKEVHLNKVPA 303
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
+I+ + + + + L+ A K + +K Y + ++D
Sbjct: 304 LIAWNHLRADD---HARLGLDVAAIEAKVERLRAFAPQLAEKARQVYNQPRAATVADVDA 360
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
LY+ F D LA+ R+ +P++L+ + F + +L EL+F YRARN ++L+ E +
Sbjct: 361 SLYDGFPGNGDKPLLALARTTAPEQLAGLEGRFRDPRLPELLFRYRARNHPDSLAPPERQ 420
Query: 729 RWKKYRISR 737
RW+ YR R
Sbjct: 421 RWQDYRRQR 429
>gi|346724480|ref|YP_004851149.1| exonuclease I [Xanthomonas axonopodis pv. citrumelo F1]
gi|346649227|gb|AEO41851.1| exonuclease I [Xanthomonas axonopodis pv. citrumelo F1]
Length = 481
Score = 297 bits (760), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 162/475 (34%), Positives = 263/475 (55%), Gaps = 13/475 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+FL+YD ETFG + RR R QFAA+RTD L I+ PI + +PA D LP P A ++T I
Sbjct: 4 SFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTGI 63
Query: 372 TPQFCLNNGIPEYK-FASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
TPQ L G+ E + FA I E++ +P T ++GYN+I FDDE R +RN +PYEREW
Sbjct: 64 TPQHALREGVTEAEAFARIAEQMG-RPQTCTLGYNSIRFDDEFIRCGLFRNFYDPYEREW 122
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDL++V++ + L P GI WP + +G SFKLEHL+ N++ AH+ALSDV
Sbjct: 123 RGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANDVREGDAHEALSDVY 182
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+G+AR + + P+L+++ L LR K++ + +P +I+ + + + + P
Sbjct: 183 ATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAVLP 242
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP + +I ++L DP+ L + I D L + E IP+ +HLN+SP
Sbjct: 243 LTRHPRIDSRVIVFDLEGDPEVLLRLSPDDIADRLYIRAADLPEGEQRIPLKEVHLNKSP 302
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINN--SDLELN 665
+++ + +++ R D + K A + +K+ Y + +
Sbjct: 303 ALVAWQHLRAADFQ-RLGVDHDAVVA--KAARLRALGPELAEKVRQVYGSERAAAAAVND 359
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
D LY+ F+++ D LA +R+ +P +L + F + +L EL+F YRARN+ +TLS++
Sbjct: 360 ADASLYDGFLAEGDKRLLAQVRASAPDELGALEARFRDPRLIELLFRYRARNWPQTLSFE 419
Query: 726 ELKRWKKYRISRFYNKKN-NLYNINMFYLEIESLLKKANEHDTK--ILNALLMYG 777
E +RW YR R + + + ++ +I L + + TK +L+ L +G
Sbjct: 420 EQERWNVYRRQRLFEDRGLGEVTLEQYHAQIADLRRTHPDDATKQALLDQLAAWG 474
>gi|78047196|ref|YP_363371.1| exonuclease I [Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|78035626|emb|CAJ23314.1| exodeoxyribonuclease I [Xanthomonas campestris pv. vesicatoria str.
85-10]
Length = 481
Score = 296 bits (759), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 162/475 (34%), Positives = 262/475 (55%), Gaps = 13/475 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+FL+YD ETFG + RR R QFAA+RTD L I+ PI + +PA D LP P A ++T I
Sbjct: 4 SFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTGI 63
Query: 372 TPQFCLNNGIPEYK-FASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
TPQ L G+ E + FA I E++ +P T ++GYN+I FDDE R +RN +PYEREW
Sbjct: 64 TPQHALREGVTEAEAFARIAEQMG-RPQTCTLGYNSIRFDDEFIRCGLFRNFYDPYEREW 122
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDL++V++ + L P GI WP + +G SFKLEHL+ N++ AH+ALSDV
Sbjct: 123 RGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANDVREGDAHEALSDVY 182
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+G+AR + + P+L+++ L LR K++ + +P +I+ + + + + P
Sbjct: 183 ATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAVLP 242
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP + +I ++L DP+ L + I D L + E IP+ +HLN+SP
Sbjct: 243 LTRHPRIDSRVIVFDLEGDPEVLLRLSPDDIADRLYIRAADLPEGEQRIPLKEVHLNKSP 302
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINN--SDLELN 665
+++ + +++ R D + K A + +K+ Y +
Sbjct: 303 ALVAWQHLRAADFQ-RLGVDHDAVVA--KAARLRALGPELAEKVRQVYGSERAAVAAVND 359
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
D LY+ F+++ D LA +R+ +P +L + F + +L EL+F YRARN+ +TLS++
Sbjct: 360 ADASLYDGFLAEGDKRLLAQVRASAPDELGALEARFRDPRLIELLFRYRARNWPQTLSFE 419
Query: 726 ELKRWKKYRISRFYNKKN-NLYNINMFYLEIESLLKKANEHDTK--ILNALLMYG 777
E +RW YR R + + ++ +I L + ++ TK +L+ L +G
Sbjct: 420 EQERWNVYRRQRLLEDRGLGEVTLEQYHAQIADLRRTHSDDATKQALLDQLAAWG 474
>gi|294626343|ref|ZP_06704945.1| exodeoxyribonuclease I [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|294665158|ref|ZP_06730459.1| exodeoxyribonuclease I [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|292599344|gb|EFF43479.1| exodeoxyribonuclease I [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292605071|gb|EFF48421.1| exodeoxyribonuclease I [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
Length = 481
Score = 296 bits (759), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 162/474 (34%), Positives = 259/474 (54%), Gaps = 11/474 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+FL+YD ETFG + RR R QFAA+RTD L I+ PI + +PA D LP P A ++T I
Sbjct: 4 SFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRMIEEPISFFVQPADDLLPSPYATMVTGI 63
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L G+ E + S I + +P T ++GYN+I FDDE R +RN +PYEREW+
Sbjct: 64 TPQHALREGVTEAEAFSRIAEQMGRPQTCTLGYNSIRFDDEFIRCGLFRNFYDPYEREWR 123
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
SRWDL++V++ + L P GI WP + +G SFKLEHL+ N++ AH+ALSDV A
Sbjct: 124 GGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANDVREGDAHEALSDVYA 183
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+G+AR + + PRL+++ L LR K++ + + +P +I+ + + + + P+
Sbjct: 184 TIGMARKFQQHQPRLWDYALRLRDKRFAASLLDVIAMQPVLHISQRYPASRLCAAAVLPL 243
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP + +I ++L DP+ L + I D L + E IP+ +HLN+SP
Sbjct: 244 TRHPRIDSRVIVFDLDGDPEVLLRLSPDDIADRLYIRAADLPEGEQRIPLKEVHLNKSPA 303
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINN--SDLELNI 666
+++ + +++ R D + K A + +K+ Y + +
Sbjct: 304 LVAWQHLRAADFE-RLGVDHDAVVA--KAARLRALGPELAEKVRQVYGSERAAAAAVNDA 360
Query: 667 DEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKE 726
D LY+ F+++ D LA +R+ +P +L + F + +L EL+F YRARN+ +TLS++E
Sbjct: 361 DASLYDGFLAEGDKRLLAQVRASAPDELGALEARFRDPRLIELLFRYRARNWPQTLSFEE 420
Query: 727 LKRWKKYRISRFYNKKN-NLYNINMFYLEIESLLKKANEHDTK--ILNALLMYG 777
+RW YR R + + ++ +I L E TK +L+ L +G
Sbjct: 421 QERWNVYRRQRLLEDRGLGEVTLEQYHAQIADLRGAHPEDATKQALLDQLAAWG 474
>gi|424794541|ref|ZP_18220498.1| Exodeoxyribonuclease I [Xanthomonas translucens pv. graminis
ART-Xtg29]
gi|422795905|gb|EKU24514.1| Exodeoxyribonuclease I [Xanthomonas translucens pv. graminis
ART-Xtg29]
Length = 479
Score = 296 bits (759), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 157/474 (33%), Positives = 257/474 (54%), Gaps = 11/474 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+FL+YD ETFG + RR R QFAA+RTD L+ ++ PI + +PA D LP P A LIT I
Sbjct: 4 SFLFYDLETFGADPRRTRIAQFAALRTDAALHPVEEPISFFVQPADDLLPSPIATLITGI 63
Query: 372 TPQFCLNNGIPEY-KFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
PQ L +GI E FA I E++ +P T ++GYN++ FDDE R +RN +PYEREW
Sbjct: 64 APQQALRDGINEADAFARIAEQM-ARPQTCTLGYNSLRFDDEFVRHGLFRNFHDPYEREW 122
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDL+++++ + L P GI WP + +G SFKLE L+ N + AH+ALSDV
Sbjct: 123 RGGNSRWDLLDMLRLMHALRPDGIVWPQREDGATSFKLEQLALANGVRDGDAHEALSDVH 182
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+G+ARL R + PRL+++ L LR K++ + +P +++ + + + + P
Sbjct: 183 ATIGMARLFREHQPRLWDYALKLRDKRFCGGLLDVVAMQPVLHVSMRYPAARLCAAPVLP 242
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP + ++ ++L D + L +I D L + E IP+ +HLN++P
Sbjct: 243 LARHPRIDSRVLVFDLEGDIEPLLRYTPEQIADRLYTPQADLPEGEQRIPLKEVHLNKTP 302
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
+++ + + + L+ A K A + +K+ + + ++D
Sbjct: 303 ALVAWSHLRDPDFA---RLQLDPAQILAKAARLREAGPELAEKVRRVFGNERASATADVD 359
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY+ F++ D +A +R+ P +L+ + F + +L EL+F YRARN+ +TLS E
Sbjct: 360 ASLYDGFLADTDKRAMAQVRATPPAQLAPLEHGFRDPRLPELLFRYRARNWPQTLSIAEQ 419
Query: 728 KRWKKYRISRFYNKKN-NLYNINMFYLEIESLLKKANEHDTK--ILNALLMYGK 778
RW YR R + + + +Y ++ L + TK +L+ L +G+
Sbjct: 420 SRWDDYRRGRLHGDSGLSELGFDGYYAQLADLRLAHPDDATKQALLDQLAAWGQ 473
>gi|325928185|ref|ZP_08189394.1| Exodeoxyribonuclease I subunit C [Xanthomonas perforans 91-118]
gi|325541481|gb|EGD13014.1| Exodeoxyribonuclease I subunit C [Xanthomonas perforans 91-118]
Length = 481
Score = 296 bits (757), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 162/475 (34%), Positives = 261/475 (54%), Gaps = 13/475 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+FL+YD ETFG + RR R QFAA+RTD L I+ PI + +PA D LP P A ++T I
Sbjct: 4 SFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTGI 63
Query: 372 TPQFCLNNGIPEYK-FASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
TPQ L G+ E + FA I E++ +P T ++GYN+I FDDE R +RN +PYEREW
Sbjct: 64 TPQHALREGVTEAEAFARIAEQMG-RPQTCTLGYNSIRFDDEFIRCGLFRNFYDPYEREW 122
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDL++V++ + L P GI WP + +G SFKLEHL+ N++ AH+ALSDV
Sbjct: 123 RGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANDVREGDAHEALSDVY 182
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+G+AR + + P+L+++ L LR K++ + +P +I+ + + + + P
Sbjct: 183 ATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAVLP 242
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP + +I ++L DP+ L + I D L + E IP+ +HLN+SP
Sbjct: 243 LTRHPRIDSRVIVFDLEGDPEVLLRLSPDDIADRLYIRAADLPEGEQRIPLKEVHLNKSP 302
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINN--SDLELN 665
+++ + +++ R D + K A + +K+ Y +
Sbjct: 303 ALVAWQHLRAADFQ-RLGVDHDAVVA--KAARLRALGPELAEKVRQVYGSERAAVAAVND 359
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
D LY+ F+++ D LA +R+ +P +L + F + +L EL+F YRARN+ +TLS++
Sbjct: 360 ADASLYDGFLAEGDKRLLAQVRASAPDELGALEARFRDPRLIELLFRYRARNWPQTLSFE 419
Query: 726 ELKRWKKYRISRFYNKKN-NLYNINMFYLEIESLLKKANEHDTK--ILNALLMYG 777
E +RW YR R + + ++ +I L + + TK +L+ L +G
Sbjct: 420 EQERWNVYRRQRLLEDRGLGEVTLEQYHAQIADLRRTHPDDATKQALLDQLAAWG 474
>gi|21242349|ref|NP_641931.1| exonuclease I [Xanthomonas axonopodis pv. citri str. 306]
gi|21107784|gb|AAM36467.1| exodeoxyribonuclease I [Xanthomonas axonopodis pv. citri str. 306]
Length = 481
Score = 296 bits (757), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 162/475 (34%), Positives = 262/475 (55%), Gaps = 13/475 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+FL+YD ETFG + RR R QFAA+RTD L I+ PI + +PA D LP P A ++T I
Sbjct: 4 SFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTGI 63
Query: 372 TPQFCLNNGIPEYK-FASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
TPQ L G+ E + FA I E++ +P T ++GYN+I FDDE R +RN +PYEREW
Sbjct: 64 TPQHALREGVTEAEAFARIAEQMG-RPQTCTLGYNSIRFDDEFIRCGLFRNFYDPYEREW 122
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDL++V++ + L P GI WP + +G SFKLEHL+ N++ AH+ALSDV
Sbjct: 123 RGGNSRWDLLDVLRLVHALRPDGIVWPQREDGATSFKLEHLADANDVREGDAHEALSDVY 182
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+G+AR + + P+L+++ L LR K++ A + +P +++ + + + + P
Sbjct: 183 ATIGMARKFQQHQPKLWDYALRLRDKRFAAALLDVIAMQPVLHVSQRYPASRLCAAAVLP 242
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP + +I ++L DP+ L + I D L + E IP+ +HLN+SP
Sbjct: 243 LTRHPRIDSRVIVFDLEGDPEVLLRLSPDDIADRLYIRAADLPEGEQRIPLKEVHLNKSP 302
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINN--SDLELN 665
+++ + +++ R D + K A + +K+ Y + +
Sbjct: 303 ALVAWQHLRAADFE-RLGVDHDAVVA--KAARLRALGPELAEKVRQVYGSERAAAAAVND 359
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
D LY+ F+++ D LA +R+ +P +L + F + +L EL+F YRARN+ +TLS++
Sbjct: 360 ADASLYDGFLAEGDKRLLAQVRASAPDELGALEARFRDPRLIELLFRYRARNWPQTLSFE 419
Query: 726 ELKRWKKYRISRFYNKKN-NLYNINMFYLEIESLLKKANEHDTK--ILNALLMYG 777
E +RW YR R + + ++ +I L + TK +L+ L +G
Sbjct: 420 EQERWNVYRRQRLLQDRGLGEVTLEQYHAQIADLRGAHPDDATKQALLDQLAAWG 474
>gi|422322190|ref|ZP_16403232.1| DNA polymerase I [Achromobacter xylosoxidans C54]
gi|317402839|gb|EFV83381.1| DNA polymerase I [Achromobacter xylosoxidans C54]
Length = 948
Score = 295 bits (756), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 131/270 (48%), Positives = 194/270 (71%), Gaps = 4/270 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRAF+A+PD+RN P GALYG + MLRKL +Y+A Y ACIFDA+GK FR+
Sbjct: 51 VDGSSYLYRAFHAMPDLRNAQGEPTGALYGVVNMLRKLVSDYKAEYAACIFDARGKTFRD 110
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LYP YK+ R MP +L QI IH+ V+A+GWP+L I+GVEADDVIGTLA +A + +
Sbjct: 111 DLYPEYKSHRPPMPEDLAAQIEPIHRAVRALGWPVLAIEGVEADDVIGTLACRAAER-GV 169
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
++ST DKD+AQLV++ + L+N + ++ D ++++FGV+P++IVDY L+GD DN+
Sbjct: 170 HTVVSTGDKDLAQLVNSHVTLVNTMSGEVLDEAGVLNKFGVAPDRIVDYLMLVGDTVDNV 229
Query: 957 PGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCD 1016
PGV K+GPKTA K ++++ S++ ++ A IKGV G NLR A+ P +++LT+K DCD
Sbjct: 230 PGVTKVGPKTAAKWISEFGSIDKLVEGAEGIKGVAGNNLREAIPNFPLTRQLLTVKCDCD 289
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKYN 1046
LT ++ S+ + L + +D+ L +L+ +Y
Sbjct: 290 LTGHVDSV-DDLTPRDRDDATLTELYERYG 318
>gi|15617148|ref|NP_240361.1| exonuclease I [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
gi|11386767|sp|P57620.1|EX1_BUCAI RecName: Full=Exodeoxyribonuclease I; Short=Exonuclease I; AltName:
Full=DNA deoxyribophosphodiesterase; Short=dRPase
gi|25403649|pir||G84994 exodeoxyribonuclease I (EC 3.1.11.1) [imported] - Buchnera sp.
(strain APS)
gi|10039213|dbj|BAB13247.1| exodeoxyribonuclease I [Buchnera aphidicola str. APS (Acyrthosiphon
pisum)]
Length = 413
Score = 295 bits (756), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 178/411 (43%), Positives = 242/411 (58%), Gaps = 16/411 (3%)
Query: 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKIT 372
FL+YDYETFG++ D+P QFA IRTDI LN ID+P YC P+ D+LPDP + LIT IT
Sbjct: 11 FLFYDYETFGIHTALDKPAQFACIRTDINLNIIDDPQYFYCFPSDDYLPDPGSVLITHIT 70
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
PQ+ NG EY F+ I I ++ T VGYN I FDDEITR +F+RN +PYE WKN
Sbjct: 71 PQYTEKNGTNEYNFSQKIYDILMQSNTCVVGYNNINFDDEITRNIFYRNFFDPYEWSWKN 130
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRAT 492
SRWD++N+++A Y L P GI WP G SFKL L+ NN+ H AH+A+SDV AT
Sbjct: 131 GNSRWDILNLLRACYALRPTGINWPKNELGLTSFKLSDLTKTNNIVHLNAHNAVSDVYAT 190
Query: 493 LGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPIC 552
+ +A+L++ PRLF+F +RKK + I +P YI+ F + + +S + PI
Sbjct: 191 IEIAKLVKKKQPRLFDFFFKIRKKNELYKLIDLRNFQPIIYISAYFGAIYHNMSCILPIA 250
Query: 553 IHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKE--DIPISMIHLNRSPIV- 609
H N NILI +L D K L+N KI CF K D + ++HLNR PI+
Sbjct: 251 WHENNSNILIAIDLFKDIKT-LINMCKKI----CFDSIFIKNLLDSGVVLLHLNRCPILA 305
Query: 610 -ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
I ++ N + ++F LN + IK + N K IF K NN++ N+D
Sbjct: 306 PIQVIRKEDYNRLNFHRFSLNKKIELIKKNMFFIQNI---KIIF--SKNNNTNQFFNVDL 360
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFC-FENKKLEELIFLYRARNF 718
E+YN F + KD K+ I+R+ P L ++ FC F + +L+ L F YRARNF
Sbjct: 361 EIYNGFFNSKDKKKIQIIRNTDPVFLKHI-FCNFHDSRLKNLFFRYRARNF 410
>gi|440733171|ref|ZP_20912941.1| exonuclease I [Xanthomonas translucens DAR61454]
gi|440364155|gb|ELQ01294.1| exonuclease I [Xanthomonas translucens DAR61454]
Length = 479
Score = 295 bits (756), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 155/474 (32%), Positives = 257/474 (54%), Gaps = 11/474 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+FL+YD ETFG + RR R QFAA+RTD L+ ++ PI + +PA D LP P A LIT I
Sbjct: 4 SFLFYDLETFGADPRRTRIAQFAALRTDAALHPVEEPISFFVQPADDLLPSPIATLITGI 63
Query: 372 TPQFCLNNGIPEY-KFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
PQ L +GI E FA I E++ +P T ++GYN++ FDDE R +RN +PYEREW
Sbjct: 64 APQQALRDGINEADAFARIAEQM-ARPQTCTLGYNSLRFDDEFVRHGLFRNFHDPYEREW 122
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+ SRWDL+++++ + L P GI WP + +G SFKLE L+ N + AH+ALSDV
Sbjct: 123 RGGNSRWDLLDMLRLMHALRPDGIVWPQREDGATSFKLEQLALANGVRDGDAHEALSDVH 182
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+G+A+L R + PRL+++ L LR K++ + +P +++ + + + + P
Sbjct: 183 ATIGMAQLFREHQPRLWDYALKLRDKRFCGGLLDVVAMQPVLHVSMRYPAARLCAAPVLP 242
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSP 607
+ HP + ++ ++L D + L +I D L + E IP+ +HLN++P
Sbjct: 243 LARHPRIDSRVLVFDLEGDIEPLLRYTPEQIADRLYTPQADLPEGEQRIPLKEVHLNKAP 302
Query: 608 IVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNID 667
+++ + + + ++ A K A + +K+ + + ++D
Sbjct: 303 ALVAWSHLREPDFA---RLQIDPAQILAKAARLREAGPALAEKVRRVFGSERASATADVD 359
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY+ F++ D +A +R+ P +L+ + F + +L EL+F YRARN+ +TLS E
Sbjct: 360 ASLYDGFLADTDKRAMAQVRATPPAQLAPLEHGFRDPRLPELLFRYRARNWPQTLSIAEQ 419
Query: 728 KRWKKYRISRFYNKKN-NLYNINMFYLEIESLLKKANEHDTK--ILNALLMYGK 778
RW YR R + + + +Y ++ L + TK +L+ L +G+
Sbjct: 420 SRWDDYRRQRLHGDSGLSELGFDGYYAQLADLRLAHPDDATKQALLDQLAAWGQ 473
>gi|194366373|ref|YP_002028983.1| exonuclease I [Stenotrophomonas maltophilia R551-3]
gi|194349177|gb|ACF52300.1| Exodeoxyribonuclease I [Stenotrophomonas maltophilia R551-3]
Length = 479
Score = 295 bits (755), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 154/432 (35%), Positives = 246/432 (56%), Gaps = 12/432 (2%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+FL+YD ETFG + RR R Q+AAIRTD LN ID P+ + +PA D LP P A L+T I
Sbjct: 4 SFLFYDLETFGQDPRRTRISQYAAIRTDADLNEIDTPVSFFVRPADDLLPSPMATLVTGI 63
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ L GI E + I + +PGT ++GYNT+ FDDE R+ +RN +PYEREW+
Sbjct: 64 TPQQALAEGISEAEAFDRINEQLSRPGTCALGYNTLRFDDEFVRYGLFRNFHDPYEREWR 123
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N SRWDL+++++ + P GI WP + +G SFKLEHL+ NN+ AH+ALSDVRA
Sbjct: 124 NGNSRWDLLDMLRLMRAMRPEGIQWPLREDGATSFKLEHLAEANNVREGDAHEALSDVRA 183
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+G+ARL + + PRL+++ L LR K++V + + +P +I+ + + + + P+
Sbjct: 184 TIGMARLFKQSQPRLWDYALKLRDKRFVGSLLDVAAMKPVLHISMRYPASRLCAAPVLPL 243
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
+HP N +I ++L D L I L + + E +P+ + LN+ P
Sbjct: 244 SMHPTVNNRVIVFDLDGDIDDLLELPAEVIAQRLYMRASELPEGATRVPLKEVQLNKVPA 303
Query: 609 VISNLKVLSSNLMFRYKFD---LNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELN 665
+I+ L ++ R D + + ++ + L ++++ ++ N +
Sbjct: 304 LIA-WNHLRADDHARLGLDVAAIEAKAERLRAFAPQLAEKA--RQVYNQPRVANV---AD 357
Query: 666 IDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYK 725
+D LY+ F+ D LA+ R+ +P++L+ + F + +L EL+F YRARN ++L+
Sbjct: 358 VDASLYDGFLGAGDKPLLALARTTAPEQLAALEGRFRDPRLPELLFRYRARNHPDSLAPD 417
Query: 726 ELKRWKKYRISR 737
E +RW+ YR R
Sbjct: 418 ERQRWQDYRRQR 429
>gi|161378162|ref|NP_299304.2| exonuclease I [Xylella fastidiosa 9a5c]
Length = 478
Score = 295 bits (755), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 167/474 (35%), Positives = 247/474 (52%), Gaps = 14/474 (2%)
Query: 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKIT 372
FL+YD ETFG + RR R QFAA+RTD LN I+ PI KPA D LP P A LIT IT
Sbjct: 5 FLFYDLETFGQDPRRTRIAQFAAVRTDTELNVIEEPISFLVKPADDLLPSPDATLITGIT 64
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
PQ GI E + I +P T S+GYNT+ FDDE R+ +R+ +PYEREW+N
Sbjct: 65 PQHAQREGINEAAAFTHIAMQMTRPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYEREWRN 124
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRAT 492
SRWDL+++++ + L P GI WP + +G PSFKLEHL+ N+ AH+ALSDV AT
Sbjct: 125 GNSRWDLLDMLRLMHALRPEGIHWPTREDGAPSFKLEHLALANHAREGAAHEALSDVYAT 184
Query: 493 LGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPIC 552
+ +AR R PRL+N+ L LR K++ + +P +I+ + + + + P+
Sbjct: 185 ISMARKFRTAQPRLWNYALQLRDKRFCATLLDITSIQPVLHISQRYPATQHCAAAVLPLT 244
Query: 553 IHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPIV 609
HP N +I ++L D L I D L E IP+ +HLN+ P +
Sbjct: 245 THPHINNRIIVFDLNGDIDTLLRLSAEDIADRLYTPTVDLPEGEQRIPLKEVHLNKVPAL 304
Query: 610 ISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKI--FLDYKINNSDLELNID 667
I+ + +S+ + L+ K A + +K+ + N ++ + D
Sbjct: 305 IAWNNLRASDFT---RLGLDADMLETKAAQLRACGPDLAEKVRHVFSHTYNTAN---DAD 358
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
LY+ F++++D +L LR+ P L+ + +L EL+F YRARNF ETLS E
Sbjct: 359 ASLYDGFLTEEDRRRLPQLRASPPDTLATFEQHLRDPRLIELLFRYRARNFPETLSCDEQ 418
Query: 728 KRWKKYRISRFYNKKN-NLYNINMFYLEIESLLKKANEHDTK--ILNALLMYGK 778
RW YR R + ++ ++ +I L +E K +L+ L +G
Sbjct: 419 TRWDTYRRHRLTTDAGLSELTLDQYHAQIAELRMTHSEDVAKQLLLDQLASWGS 472
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.139 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,938,970,843
Number of Sequences: 23463169
Number of extensions: 958222954
Number of successful extensions: 2465184
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 15975
Number of HSP's successfully gapped in prelim test: 1394
Number of HSP's that attempted gapping in prelim test: 2427140
Number of HSP's gapped (non-prelim): 20436
length of query: 1428
length of database: 8,064,228,071
effective HSP length: 156
effective length of query: 1272
effective length of database: 8,698,941,003
effective search space: 11065052955816
effective search space used: 11065052955816
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 84 (37.0 bits)