Query psy2882
Match_columns 1428
No_of_seqs 1059 out of 5540
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 19:19:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2882.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2882hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qxf_A Exodeoxyribonuclease I; 100.0 3.6E-96 1E-100 891.1 45.7 461 311-780 9-474 (482)
2 1exn_A 5'-exonuclease, 5'-nucl 100.0 1.3E-57 4.4E-62 517.7 7.8 236 776-1020 21-270 (290)
3 1bgx_T TAQ DNA polymerase; DNA 100.0 1.2E-53 4.1E-58 548.2 2.1 264 777-1048 15-279 (832)
4 2ew0_A Hypothetical protein ac 100.0 1.5E-46 5.1E-51 403.3 12.8 182 1072-1268 4-185 (192)
5 2haf_A Putative translation re 100.0 1.5E-46 5.2E-51 407.9 11.5 191 1072-1271 16-206 (211)
6 2gzo_A UPF0301 protein SO3346; 100.0 1.6E-46 5.6E-51 403.9 10.4 185 1072-1266 2-186 (195)
7 3h7i_A Ribonuclease H, RNAse H 100.0 3.4E-47 1.2E-51 427.5 4.8 190 776-972 15-230 (305)
8 2do8_A UPF0301 protein HD_1794 100.0 4.2E-46 1.4E-50 399.3 8.9 182 1073-1266 4-185 (188)
9 2izo_A FEN1, flap structure-sp 100.0 3E-45 1E-49 431.0 15.1 248 776-1048 20-315 (346)
10 3q8k_A Flap endonuclease 1; he 100.0 6.9E-45 2.4E-49 425.4 14.6 251 776-1048 29-316 (341)
11 2gs5_A Conserved hypothetical 100.0 3.8E-44 1.3E-48 386.7 11.1 170 1073-1264 15-192 (198)
12 1rxw_A Flap structure-specific 100.0 6.4E-44 2.2E-48 418.5 12.3 243 776-1048 23-311 (336)
13 1a76_A Flap endonuclease-1 pro 100.0 2.2E-42 7.4E-47 404.0 17.0 238 776-1048 23-297 (326)
14 1ul1_X Flap endonuclease-1; pr 100.0 4.7E-42 1.6E-46 408.0 12.9 250 776-1048 29-316 (379)
15 3ory_A Flap endonuclease 1; hy 100.0 2.2E-42 7.6E-47 406.6 9.1 245 776-1048 37-329 (363)
16 1b43_A Protein (FEN-1); nuclea 100.0 4.1E-41 1.4E-45 395.3 15.8 242 776-1048 23-311 (340)
17 3r8s_H 50S ribosomal protein L 100.0 3.1E-39 1.1E-43 331.9 13.2 138 174-311 1-139 (149)
18 1div_A Ribosomal protein L9; r 100.0 1.1E-38 3.7E-43 327.9 13.5 137 174-311 1-138 (149)
19 1nkw_F 50S ribosomal protein L 100.0 8.2E-38 2.8E-42 320.3 15.8 135 174-311 1-135 (146)
20 3v2d_I 50S ribosomal protein L 100.0 3.7E-38 1.3E-42 323.5 12.3 136 174-311 1-137 (148)
21 3bbo_J Ribosomal protein L9; l 100.0 2.2E-37 7.5E-42 329.8 3.8 149 158-311 37-187 (197)
22 2gm2_A Conserved hypothetical 100.0 1.2E-33 4.2E-38 286.1 11.5 123 1305-1428 1-123 (132)
23 3cpk_A Uncharacterized protein 100.0 8E-33 2.7E-37 281.7 14.6 123 1305-1428 1-147 (150)
24 2fi9_A Outer membrane protein; 100.0 2.1E-32 7.1E-37 276.3 13.0 121 1304-1427 4-126 (128)
25 2fvt_A Conserved hypothetical 100.0 2.3E-31 8E-36 270.0 10.4 116 1311-1428 9-126 (135)
26 3qe9_Y Exonuclease 1; exonucle 100.0 1.3E-30 4.6E-35 305.8 10.2 201 777-987 27-260 (352)
27 2ab1_A Hypothetical protein; H 100.0 9.7E-30 3.3E-34 254.2 12.9 111 1315-1427 3-120 (122)
28 2cyj_A Hypothetical protein PH 99.9 3.1E-27 1.1E-31 234.6 8.8 106 1317-1426 2-115 (118)
29 3u3y_B Three prime repair exon 99.9 4.2E-26 1.4E-30 262.4 14.4 180 310-502 11-214 (314)
30 3mxm_B Three prime repair exon 99.9 2.2E-25 7.4E-30 250.0 15.2 180 310-502 11-214 (242)
31 1ihn_A Hypothetical protein MT 99.9 8.2E-26 2.8E-30 222.6 4.9 101 1316-1426 2-110 (113)
32 2gui_A DNA polymerase III epsi 99.9 3E-23 1E-27 224.8 18.5 173 311-508 9-190 (194)
33 1w0h_A 3'-5' exonuclease ERI1; 99.9 3.3E-23 1.1E-27 226.0 17.6 175 310-503 9-195 (204)
34 2p1j_A POLIII, DNA polymerase 99.9 2.6E-23 8.9E-28 224.0 16.2 164 311-502 12-175 (186)
35 1y97_A Three prime repair exon 99.9 3.8E-23 1.3E-27 231.0 15.4 180 311-502 10-209 (238)
36 2f96_A Ribonuclease T; RNAse, 99.9 5.1E-23 1.7E-27 228.1 14.8 173 311-505 29-215 (224)
37 3tr8_A Oligoribonuclease; tran 99.9 7.1E-23 2.4E-27 220.2 9.8 161 310-502 8-180 (186)
38 3v9w_A Ribonuclease T; DEDD nu 99.9 6.3E-22 2.2E-26 220.9 16.1 169 311-502 37-220 (235)
39 2xri_A ERI1 exoribonuclease 3; 99.9 6.6E-22 2.2E-26 219.3 14.9 170 311-502 31-213 (224)
40 2igi_A Oligoribonuclease; RNAs 99.9 5.3E-22 1.8E-26 212.4 11.4 163 310-502 4-176 (180)
41 1zbh_A 3'-5' exonuclease ERI1; 99.9 5.4E-21 1.9E-25 220.8 18.6 173 311-502 78-262 (299)
42 2gbz_A Oligoribonuclease; ORN, 99.8 1.6E-21 5.4E-26 211.6 12.0 163 311-502 9-180 (194)
43 3i1m_R 30S ribosomal protein S 99.8 6.7E-22 2.3E-26 178.4 2.8 67 114-180 2-68 (75)
44 1zbu_A ERI-1 homolog, 3'-5' ex 99.8 2.5E-20 8.6E-25 218.9 15.7 173 311-502 128-312 (349)
45 3cg7_A CRN-4, cell death-relat 99.8 2E-20 6.7E-25 216.8 11.8 173 311-501 19-207 (308)
46 2hba_A BL17, 50S ribosomal pro 99.8 3E-21 1E-25 161.8 3.1 51 174-224 1-51 (52)
47 1wlj_A Interferon stimulated g 99.8 2.3E-20 7.8E-25 201.6 10.0 160 310-502 4-168 (189)
48 2vqe_R 30S ribosomal protein S 99.8 5.9E-21 2E-25 177.6 3.5 65 115-179 14-78 (88)
49 1cqm_A Ribosomal protein S6; a 99.8 4.8E-20 1.6E-24 178.8 7.4 80 1-80 22-101 (101)
50 3r8n_F 30S ribosomal protein S 99.8 3E-20 1E-24 179.9 3.5 80 1-80 21-100 (100)
51 3i1m_F 30S ribosomal protein S 99.8 3.7E-20 1.3E-24 187.4 4.3 87 1-87 21-107 (135)
52 2j5a_A 30S ribosomal protein S 99.8 2.4E-19 8.4E-24 176.3 8.0 80 1-80 28-108 (110)
53 1vmb_A 30S ribosomal protein S 99.8 1.6E-19 5.4E-24 183.7 5.4 85 1-85 39-124 (140)
54 3r3t_A 30S ribosomal protein S 99.7 1.9E-19 6.3E-24 174.0 -2.2 74 1-74 25-98 (99)
55 3bbn_R Ribosomal protein S18; 99.7 9.7E-19 3.3E-23 165.5 2.3 65 115-181 12-76 (103)
56 3bbn_F Ribosomal protein S6; s 99.7 1.4E-17 4.8E-22 172.4 7.1 75 1-75 83-166 (168)
57 3r8n_R 30S ribosomal protein S 99.6 4E-17 1.4E-21 138.7 2.7 49 132-180 1-49 (55)
58 3zzp_A TS9, ribosomal protein 98.6 7.8E-09 2.7E-13 94.8 2.8 42 34-75 2-43 (77)
59 2kjw_A TS9, 30S ribosomal prot 98.3 6.1E-08 2.1E-12 92.4 0.3 40 34-73 2-41 (96)
60 2kfn_A Klenow fragment of DNA 98.3 6.2E-06 2.1E-10 103.9 16.3 144 312-503 27-193 (605)
61 4gmj_B CCR4-NOT transcription 98.0 3.9E-05 1.3E-09 87.2 14.9 177 311-502 34-244 (285)
62 1x9m_A DNA polymerase; DNA plo 98.0 7.7E-06 2.6E-10 104.7 9.0 137 313-502 1-182 (698)
63 2kjw_A TS9, 30S ribosomal prot 97.9 1.4E-06 4.8E-11 83.1 0.1 33 1-33 64-96 (96)
64 4hec_A Putative uncharacterize 97.8 3.4E-05 1.2E-09 82.6 9.3 151 308-502 19-181 (190)
65 1qht_A Protein (DNA polymerase 97.3 0.00075 2.5E-08 87.3 11.6 133 310-480 134-288 (775)
66 1s5j_A DNA polymerase I; repli 97.2 0.0009 3.1E-08 87.3 10.9 165 311-497 190-387 (847)
67 1noy_A Protein (DNA polymerase 97.0 0.0021 7.3E-08 76.6 11.5 171 311-499 106-335 (388)
68 2d5r_A CCR4-NOT transcription 97.0 0.0061 2.1E-07 68.1 14.1 178 311-503 24-235 (252)
69 2p51_A SPCC18.06C protein; DED 97.0 0.0096 3.3E-07 68.6 15.5 177 311-502 45-255 (333)
70 3iay_A DNA polymerase delta ca 96.8 0.0087 3E-07 78.6 15.3 98 312-424 250-355 (919)
71 1uoc_A POP2; hydrolase, DEDD n 96.8 0.005 1.7E-07 69.9 11.4 187 311-502 38-264 (289)
72 1iv0_A Hypothetical protein; r 96.7 8.6E-05 2.9E-09 71.3 -2.9 52 1251-1302 2-55 (98)
73 1nu0_A Hypothetical protein YQ 96.5 0.00023 8E-09 72.6 -1.5 51 1252-1302 5-57 (138)
74 2gv9_A DNA polymerase; polymer 95.9 0.035 1.2E-06 74.6 13.2 101 311-417 320-436 (1193)
75 3d45_A Poly(A)-specific ribonu 95.6 0.047 1.6E-06 67.2 12.3 91 398-502 276-391 (507)
76 4dfk_A DNA polymerase I, therm 95.3 0.015 5E-07 72.1 6.3 119 311-503 10-128 (540)
77 2a1j_A DNA repair endonuclease 94.9 0.011 3.8E-07 52.0 2.5 27 957-983 7-33 (63)
78 3k59_A POL II, DNA polymerase 94.8 0.45 1.5E-05 61.5 18.1 169 271-475 95-303 (786)
79 3qex_A DNA polymerase, GP43; d 94.7 0.13 4.4E-06 67.1 12.7 178 300-498 97-337 (903)
80 1kft_A UVRC, excinuclease ABC 93.9 0.023 7.7E-07 52.0 2.4 29 955-983 25-53 (78)
81 1z00_B DNA repair endonuclease 93.8 0.033 1.1E-06 51.9 3.1 31 958-988 22-53 (84)
82 1z00_A DNA excision repair pro 93.5 0.049 1.7E-06 51.0 3.9 27 957-983 22-48 (89)
83 1x2i_A HEF helicase/nuclease; 93.4 0.042 1.4E-06 49.3 3.1 27 957-983 17-43 (75)
84 2bgw_A XPF endonuclease; hydro 93.3 0.043 1.5E-06 60.0 3.8 112 862-983 72-191 (219)
85 3pv8_A DNA polymerase I; DNA p 92.9 0.21 7.2E-06 62.5 9.5 129 313-501 31-179 (592)
86 3saf_A Exosome component 10; e 92.6 0.57 2E-05 56.3 12.2 128 312-502 130-276 (428)
87 2a1j_B DNA excision repair pro 92.4 0.052 1.8E-06 51.1 2.4 27 957-983 35-61 (91)
88 1vhx_A Putative holliday junct 91.8 0.016 5.6E-07 59.8 -2.0 52 1251-1302 4-59 (150)
89 2nrt_A Uvrabc system protein C 90.9 0.093 3.2E-06 57.3 2.6 149 826-983 42-197 (220)
90 2e6m_A Werner syndrome ATP-dep 87.3 2.7 9.1E-05 45.1 10.9 88 389-502 87-194 (208)
91 3c65_A Uvrabc system protein C 86.1 0.14 4.9E-06 56.1 0.0 28 956-983 175-202 (226)
92 1s5l_U Photosystem II 12 kDa e 82.1 0.5 1.7E-05 47.4 1.9 41 959-1000 68-110 (134)
93 4gfj_A Topoisomerase V; helix- 80.7 0.77 2.6E-05 53.3 3.0 26 958-983 472-497 (685)
94 1ixr_A Holliday junction DNA h 79.0 0.75 2.6E-05 49.3 2.1 23 959-981 77-102 (191)
95 1cuk_A RUVA protein; DNA repai 78.0 1.3 4.5E-05 47.8 3.7 24 959-982 78-104 (203)
96 1vq8_Y 50S ribosomal protein L 70.6 0.92 3.1E-05 50.3 0.2 27 955-981 16-43 (241)
97 2a1r_A Poly(A)-specific ribonu 70.4 7.9 0.00027 46.5 8.2 100 387-501 270-395 (430)
98 2py5_A DNA polymerase; protein 70.1 7.9 0.00027 48.3 8.4 132 311-499 6-180 (575)
99 2i5h_A Hypothetical protein AF 69.3 4.9 0.00017 43.0 5.3 50 937-986 112-169 (205)
100 2owo_A DNA ligase; protein-DNA 68.6 2.8 9.6E-05 53.0 3.9 26 958-983 516-541 (671)
101 1vk0_A Hypothetical protein; h 65.8 30 0.001 37.2 10.9 90 389-501 99-205 (206)
102 1yt3_A Ribonuclease D, RNAse D 65.3 19 0.00065 42.2 10.0 88 389-502 65-169 (375)
103 2fmp_A DNA polymerase beta; nu 65.2 3.4 0.00012 48.0 3.5 26 957-983 101-128 (335)
104 2duy_A Competence protein come 64.3 2.4 8.2E-05 38.1 1.5 18 957-974 30-47 (75)
105 1dgs_A DNA ligase; AMP complex 63.4 4 0.00014 51.5 3.9 25 958-982 511-535 (667)
106 3arc_U Photosystem II 12 kDa e 63.3 3.2 0.00011 39.5 2.3 41 956-997 28-70 (97)
107 2w9m_A Polymerase X; SAXS, DNA 62.4 4.8 0.00017 50.2 4.3 28 957-984 100-128 (578)
108 2ihm_A POL MU, DNA polymerase 61.2 4.1 0.00014 47.8 3.2 24 958-982 106-131 (360)
109 3c1y_A DNA integrity scanning 61.0 4.2 0.00014 47.7 3.2 26 958-983 319-344 (377)
110 2hbj_A Exosome complex exonucl 59.9 22 0.00075 42.3 9.3 87 389-502 150-253 (410)
111 3sgi_A DNA ligase; HET: DNA AM 59.8 1.9 6.4E-05 53.8 0.0 27 957-983 532-558 (615)
112 2ztd_A Holliday junction ATP-d 58.9 6.3 0.00021 42.8 3.9 18 959-976 93-110 (212)
113 2y35_A LD22664P; hydrolase-DNA 50.8 23 0.0008 47.3 8.0 187 774-963 29-297 (1140)
114 2bcq_A DNA polymerase lambda; 50.7 7.8 0.00027 45.0 3.2 26 958-984 100-127 (335)
115 1jms_A Terminal deoxynucleotid 49.0 7.7 0.00026 45.8 2.8 24 958-982 125-150 (381)
116 3b0x_A DNA polymerase beta fam 48.1 12 0.00041 46.6 4.5 27 958-984 97-125 (575)
117 2edu_A Kinesin-like protein KI 45.5 7.3 0.00025 36.8 1.5 19 956-974 42-60 (98)
118 4glx_A DNA ligase; inhibitor, 45.5 14 0.00048 46.0 4.5 27 957-983 515-541 (586)
119 3maj_A DNA processing chain A; 40.7 15 0.0005 43.4 3.4 40 938-985 18-57 (382)
120 3pie_A 5'->3' exoribonuclease 36.8 1E+02 0.0034 41.2 10.4 183 776-963 31-300 (1155)
121 2bgw_A XPF endonuclease; hydro 34.3 21 0.00071 38.5 3.2 69 809-892 68-137 (219)
122 2a1r_A Poly(A)-specific ribonu 33.3 54 0.0019 39.2 6.8 73 311-383 22-133 (430)
123 2ztd_A Holliday junction ATP-d 33.2 17 0.00059 39.3 2.2 23 953-975 122-144 (212)
124 1bgx_T TAQ DNA polymerase; DNA 31.1 84 0.0029 40.8 8.5 159 262-502 260-419 (832)
125 3b0x_A DNA polymerase beta fam 29.9 39 0.0013 42.0 5.0 21 956-976 130-150 (575)
126 1ixr_A Holliday junction DNA h 29.4 19 0.00066 38.3 1.8 24 952-975 105-128 (191)
127 2ziu_A MUS81 protein; helix-ha 29.1 29 0.001 39.5 3.4 31 958-988 241-271 (311)
128 3ugs_B Undecaprenyl pyrophosph 28.6 1.2E+02 0.004 33.2 7.7 67 821-892 6-82 (225)
129 1use_A VAsp, vasodilator-stimu 26.6 1.7E+02 0.0057 23.9 6.2 44 719-782 1-44 (45)
130 3v32_B Ribonuclease ZC3H12A; r 24.8 1.2E+02 0.0039 32.2 6.7 101 775-907 25-134 (185)
131 1cuk_A RUVA protein; DNA repai 23.5 30 0.001 37.1 2.0 23 952-974 106-128 (203)
132 3cym_A Uncharacterized protein 23.4 1.5E+02 0.0051 35.5 8.2 85 388-502 85-186 (440)
133 2csb_A Topoisomerase V, TOP61; 22.4 97 0.0033 33.9 5.6 74 960-1047 417-490 (519)
134 2elu_A Zinc finger protein 406 22.0 32 0.0011 25.9 1.2 25 118-147 7-31 (37)
135 2qip_A Protein of unknown func 21.6 91 0.0031 31.9 5.1 52 862-914 66-126 (165)
136 1x2i_A HEF helicase/nuclease; 20.5 21 0.00072 31.3 -0.0 23 952-974 44-66 (75)
137 3fp5_A Acyl-COA binding protei 20.4 1.9E+02 0.0064 27.9 6.6 54 719-775 51-105 (106)
No 1
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=100.00 E-value=3.6e-96 Score=891.08 Aligned_cols=461 Identities=37% Similarity=0.666 Sum_probs=413.9
Q ss_pred ceEEEEeeccccCccCCCcceeEEEEEEeCCceeeccceEEEEecCCCCCCChhhHhhcCCCHHHHhcCCCChHHHHHHH
Q psy2882 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKITPQFCLNNGIPEYKFASII 390 (1428)
Q Consensus 311 ~~~v~~D~ETTGldp~~DrIiqiaaIr~~~~~~~i~~~~~~~~~p~~~~~p~pea~~itGITpe~~~~~g~~e~e~~~~i 390 (1428)
.+|||+|+||||++|..|+|||||+|+++.++++++++++.+|+|..+++|+|+++.|||||++++...|.++.+++.++
T Consensus 9 ~~~vv~DlETTGl~p~~d~IIEIgaV~vd~~g~ii~~~f~~lVkP~~~ilp~p~a~~IhGIT~e~l~~ap~~~~evl~~f 88 (482)
T 2qxf_A 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARI 88 (482)
T ss_dssp CEEEEEEEEESSSCTTTSCEEEEEEEEECTTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHHHHHH
T ss_pred CCEEEEEEECCCCCCCCCeEEEEEEEEEECCCeEEeeeeEEEECCCCCCCCCHHHHHHhCCCHHHHhcCCCCHHHHHHHH
Confidence 58999999999999999999999999999889999988999999999888889999999999999988899889999999
Q ss_pred HHHHcCCCceEEEEcchhhhHHHHHHHHHHccccchhhhhhcCCCCCchhhHHHHHHHhCCCCcCCCCCCCCCCCCChHh
Q psy2882 391 EKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEH 470 (1428)
Q Consensus 391 ~~~~~~~~~~~VGyN~i~FD~~flr~~f~Rn~~~~y~~~~~~g~sr~D~ld~~rl~~~l~p~~~~~p~~~~g~~s~kLe~ 470 (1428)
.+++.++++++||||+++||..||+++|+|+++++|..+|++|+++||++++.+.++.++|+++.||.+.++.++++|++
T Consensus 89 ~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~kL~~ 168 (482)
T 2qxf_A 89 HSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEH 168 (482)
T ss_dssp HHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCHHH
T ss_pred HHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccccCCCCCCHHH
Confidence 99998778999999989999999999999999999999999999999999999999999999999998888899999999
Q ss_pred HHHHcCCCCCCCCChHHHHHHHHHHHHHHHhhCchhHHHHHhhcCHHHHHHHhCCCCCcceEEEeeccCcCCCCceEEEe
Q psy2882 471 LSFVNNLSHKKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550 (1428)
Q Consensus 471 L~~~~gi~~~~AHdAlaDv~AT~~l~~~l~~~~p~l~~~~~~~~~k~~v~~~~~~~~~~p~~~vs~~~~~~~~~~~~~~p 550 (1428)
|++++|+++.++|+|++||+||++|++.+++++|++|++++..++|..+..++++...+|++|+|++||+.+||+++|+|
T Consensus 169 L~~~~Gi~~~~aHrAL~DA~aTa~l~~~l~~~~p~l~~~~l~~~~k~~~~~l~~~~~~~P~~~~s~~fg~~~g~~~~v~p 248 (482)
T 2qxf_A 169 LTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248 (482)
T ss_dssp HHHHTTCCCC---CTTHHHHHHHHHHHHHHHHSHHHHHHHHHTTSHHHHHHTCCTTTTCCEEEECGGGCGGGTTEEEEEE
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHhChhhhHHHHHhhhHHHHHHHHhhccCCcceEeecccccccCeeeEEee
Confidence 99999999999999999999999999999999999999999999999999999987789999999999999999999999
Q ss_pred eeccCCCCceEEEEeCCCCchhhhcCCHHHHHHHhcccccCCCCC--CCeeEEEecCCccccccccCCChhhhhhhCCCH
Q psy2882 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIVISNLKVLSSNLMFRYKFDL 628 (1428)
Q Consensus 551 ~~~~p~~~n~~i~~dL~~d~~~l~~~~~~~l~~~l~~~~~~~~~~--~plk~i~~Nk~P~~~~p~~~l~~~~~~rl~id~ 628 (1428)
+|+||+|+|++|||||+.||++|+++++++|++||||++++|++. +|||+|||||||+ |+|+++|++++++|||||.
T Consensus 249 l~~~~~n~n~~~~~dl~~d~~~l~~~~~~~l~~~l~~~~~~l~~~~~~p~k~v~~nk~P~-~~~~~~l~~~~~~r~~id~ 327 (482)
T 2qxf_A 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV-LAQANTLRPEDADRLGINR 327 (482)
T ss_dssp EEECSSCTTEEEEEETTSCCHHHHHCC-------------------CCCEEEEETTSCCE-EEEGGGSCHHHHHHHTCCH
T ss_pred eeeCCCCcccEEEEECCCChHHHhcCCHHHHHHHhccchhhhccccCCCeEEEEecCCCe-ecccccCCHHHHHHhCCCH
Confidence 999999999999999999999999999999999999999999876 8999999999999 9999999999999999999
Q ss_pred HHHHHHHHhHHhHhhChHHHHHHHHHhhc-cCCCCCCChhhhhhcCCCChhHHHHHHHHHcCChhcccccCCCCCcccHH
Q psy2882 629 NCAFKNIKCASSILNNTYIWKKIFLDYKI-NNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLE 707 (1428)
Q Consensus 629 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~~-~~~~~~~d~d~~lY~gF~s~~D~~~~~~~~~~~~~~l~~~~~~f~D~Rl~ 707 (1428)
+.|++|+++ |++||++++|+.++|++ ..++++.|||++||+||||++||++|++||+++|++|+++...|+|+||+
T Consensus 328 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~lY~gF~~~~D~~~~~~~~~~~~~~~~~~~~~f~d~rl~ 404 (482)
T 2qxf_A 328 QHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIE 404 (482)
T ss_dssp HHHHHHHHH---HHHCTTHHHHC-------------CCGGGCGGGCCCCHHHHHHHHHHHHSCTTTSTTCCCCCCSTHHH
T ss_pred HHHHHHHHH---HHhCHHHHHHHHHHHhccccCCCCCChHHHHhCCCCCHHHHHHHHHHHcCCHHHHHhCcCCCcCccHH
Confidence 999999999 99999999999999986 33677899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcccCCCccccHHHHHHHHHHHHhhcCcc--hHHHHHHHHhhhhhc
Q psy2882 708 ELIFLYRARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEH--DTKILNALLMYGKID 780 (1428)
Q Consensus 708 ~l~fr~~arn~p~~L~~~e~~~w~~~~~~rl~~~~~~~~~~~~~~~~i~~L~~~~~~~--~~~lL~~L~~Y~~i~ 780 (1428)
+|+|||||||||+|||++||++|++||++||+.+ |+++|+++|++|+++++.+ |++||++|++|++..
T Consensus 405 ~l~~r~~arn~p~~l~~~e~~~w~~~~~~~l~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~y~~~~ 474 (482)
T 2qxf_A 405 KLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPE-----FLQGYADELQMLVQQYADDKEKVALLKALWQYADEI 474 (482)
T ss_dssp HHHHHHHHHHCGGGCCHHHHHHHHHHHHHHSCHH-----HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCcccCCHHHHHHHHHHHHHHhhhh-----hHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999872 8999999999999998766 889999999999864
No 2
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=100.00 E-value=1.3e-57 Score=517.73 Aligned_cols=236 Identities=22% Similarity=0.288 Sum_probs=225.9
Q ss_pred hhhhccchhhhhhhccCCcCcCCCCccchHHHHHHHHHHHHHHhcCCCEEEEEEeCCCCCcccCCChhhhcCCCCCC---
Q psy2882 776 YGKIDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMP--- 852 (1428)
Q Consensus 776 Y~~i~g~~~~~Ra~~a~~~l~~~~G~~t~av~gf~~~l~~l~~~~~p~~~v~~fD~~~~~fR~~l~p~YKa~R~~~p--- 852 (1428)
-+-+|||+++||+|| |++|.| |++||++++.++++.++|+|++||||+++++|||++||+||+||+++|
T Consensus 21 lllIDg~~llyRa~~------~~~G~p--av~Gf~~~l~~ll~~~~p~~~vvvFD~~~~tfR~~~~~~YKa~R~~~p~~~ 92 (290)
T 1exn_A 21 LMIVDGTNLGFRFKH------NNSKKP--FASSYVSTIQSLAKSYSARTTIVLGDKGKSVFRLEHLPEYKGNRDEKYAQR 92 (290)
T ss_dssp EEEEEHHHHHHHHHH------HCSSSC--CHHHHHHHHHHHHHHTTEEEEEEECCBSCCHHHHHHCTTTTHHHHHHHHTS
T ss_pred EEEEECcHHHHHHHh------CCCCch--HHHHHHHHHHHHHHHcCCCeEEEEEcCCCchhhhhCcHHHHcCCCCCCccc
Confidence 567999999999999 578999 999999999999999999999999998889999999999999999999
Q ss_pred ----hHHHHH-HHHHHHHHHH--cCCcEEEecchhhHHHHHHHHHHHhhhCCCEEEEEeCCCCccccccCcEEEEeCC--
Q psy2882 853 ----YNLILQ-INLIHQMVKA--IGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIALINNN-- 923 (1428)
Q Consensus 853 ----~~l~~q-~~~i~~~l~~--~gi~~i~~~g~EADD~iatla~~~~~~~~~~v~IvS~DkDl~QLv~~~v~~~~~~-- 923 (1428)
++|..| ++.++++|++ ||||++.+|||||||+|||||+++. ..|.+|+|+|+||||+||++++|+++++.
T Consensus 93 ~~~~e~L~~q~~~~ikell~~~~~gip~i~~~g~EADDviatLa~~~~-~~G~~v~IvS~DkDl~Qlv~~~v~v~~~~~~ 171 (290)
T 1exn_A 93 TEEEKALDEQFFEYLKDAFELCKTTFPTFTIRGVEADDMAAYIVKLIG-HLYDHVWLISTDGDWDTLLTDKVSRFSFTTR 171 (290)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTTSCEECCTTBCHHHHHHHHHHHHG-GGSSCEEEECSCGGGGGGCCSSEEEEETTTT
T ss_pred cccchhHHHhhHHHHHHHHHhhCCCCcEEEECCcCHHHHHHHHHHHHH-HCCCcEEEEeCCCChhhcCCCCEEEEECCCC
Confidence 999999 9999999999 9999999999999999999999874 35789999999999999999999999854
Q ss_pred eeccHHHHHHHhCCCh-hhHHhhhhccccccCCCCCCCccchhhHHHHHHHhCCHHHHHHHhhhc-chhhhhhHHHhhhh
Q psy2882 924 KIHDRTTIISRFGVSP-EKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNI-KGVIGKNLRFALNW 1001 (1428)
Q Consensus 924 ~~~~~~~v~~~~Gv~p-~q~~d~~aL~GD~sDnipGvpGIG~KtA~kLL~~~gsle~i~~~~~~i-~~k~~~~l~~~~~~ 1001 (1428)
+.++.+.|.++||++| +|++|+++|+||+|||||||||||||||.+||++|||+|+||+|++++ +++++++|+++++.
T Consensus 172 ~~~~~~~v~ek~Gv~p~~q~iD~~~L~GD~sDniPGVpGIG~KTA~kLL~~~gsle~i~~~~~~~~~~~~~~~L~~~~~~ 251 (290)
T 1exn_A 172 REYHLRDMYEHHNVDDVEQFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFGNVLDIIDQLPLPGKQKYIQNLNASEEL 251 (290)
T ss_dssp EEECGGGHHHHHSSSSHHHHHHHHHHHCBGGGTBCCCTTCCHHHHHHHHHHHCSHHHHHHHCSCSCCCHHHHHHHTCHHH
T ss_pred EEEcHHHHHHHcCCCHHHHHHHHHHhcCCCcCCCCCCCcCCHhHHHHHHHHcCCHHHHHHHHHHhccHHHHHHHHHhHHH
Confidence 4689999999999999 999999999999999999999999999999999999999999999999 88999999999999
Q ss_pred chhhhhhhhccccCCCCCC
Q psy2882 1002 LPKLKKILTIKTDCDLTKN 1020 (1428)
Q Consensus 1002 ~~~~~~L~~i~~d~~l~~~ 1020 (1428)
+++||+|+||++|+|++.+
T Consensus 252 ~~ls~~L~~i~~d~~~~~~ 270 (290)
T 1exn_A 252 LFRNLILVDLPTYCVDAIA 270 (290)
T ss_dssp HHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHhceeeeCCCCCCC
Confidence 9999999999999999876
No 3
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=100.00 E-value=1.2e-53 Score=548.16 Aligned_cols=264 Identities=34% Similarity=0.503 Sum_probs=251.5
Q ss_pred hhhccchhhhhhhccCCcCcCCCCccchHHHHHHHHHHHHHHhcCCCEEEEEEeCCCCCcccCCChhhhcCCCCCChHHH
Q psy2882 777 GKIDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYNLI 856 (1428)
Q Consensus 777 ~~i~g~~~~~Ra~~a~~~l~~~~G~~t~av~gf~~~l~~l~~~~~p~~~v~~fD~~~~~fR~~l~p~YKa~R~~~p~~l~ 856 (1428)
+.+||++++||+|||+|+++|++|.||||++||++++.++++.++ +|++||||+++++||+++||+||+||+++|++|.
T Consensus 15 llIDg~~~l~ra~~a~~~l~~~~G~~t~av~gf~~~l~~ll~~~~-~~~v~vFDg~~~tfR~~~~~~YKa~R~~~pe~l~ 93 (832)
T 1bgx_T 15 LLVDGHHLAYRTFHALKGLTTSRGEPVQAVYGFAKSLLKALKEDG-DAVIVVFDAKAPSFRHEAYGGYKAGRAPTPEDFP 93 (832)
T ss_dssp CCCCCSTHHHHTTSSCTTCBCSSSCBCSSSTTHHHHHHHGGGTCC-SCCCCCCCCSSSCSSSGGGGTTTSCCCCCCTTST
T ss_pred EEEEChHHHHHHHhcCCccccCCCcEehHHHHHHHHHHHHHHHcC-CeEEEEEcCCCccccccchHHHHhccccChHHHH
Confidence 468999999999999999999999999999999999999999988 9999999998899999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCcEEEecchhhHHHHHHHHHHHhhhCCCEEEEEeCCCCccccccCcEEEEeCC-eeccHHHHHHHh
Q psy2882 857 LQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIALINNN-KIHDRTTIISRF 935 (1428)
Q Consensus 857 ~q~~~i~~~l~~~gi~~i~~~g~EADD~iatla~~~~~~~~~~v~IvS~DkDl~QLv~~~v~~~~~~-~~~~~~~v~~~~ 935 (1428)
.|++.++++|++||||++.+|||||||+|||||+++.. .|..|+|+|+|||++||++++|.++.+. ..++.+.|.++|
T Consensus 94 ~q~~~i~~~l~~~gi~~i~~pg~EADD~iatLa~~~~~-~G~~v~IvS~DkDllql~~~~v~~~~~~g~~~~~~~v~~~~ 172 (832)
T 1bgx_T 94 RQLALIKELVDLLGLARLEVPGYEADDVLASLAKKAEK-EGYEVRILTADKDLYQLLSDRIHVLHPEGYLITPAWLWEKY 172 (832)
T ss_dssp TGGGTHHHHHHHTTCCCCCCSSSCHHHHHHHHHHHHHH-HTCCBCCCCSSTTCCTTCCTTBCBCCSSSCCBCSTTHHHHT
T ss_pred HHHHHHHHHHHHCCCCEEEeCCccHHHHHHHHHHHHHH-cCCeEEEEeCCCChhhcCcCCEEEEeCCCcEEcHHHHHHHH
Confidence 99999999999999999999999999999999998643 4788999999999999999999888762 368899999999
Q ss_pred CCChhhHHhhhhccccccCCCCCCCccchhhHHHHHHHhCCHHHHHHHhhhcchhhhhhHHHhhhhchhhhhhhhccccC
Q psy2882 936 GVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDC 1015 (1428)
Q Consensus 936 Gv~p~q~~d~~aL~GD~sDnipGvpGIG~KtA~kLL~~~gsle~i~~~~~~i~~k~~~~l~~~~~~~~~~~~L~~i~~d~ 1015 (1428)
|++|+||+|+++|+||+|||||||||||||||.+||++|||+|+|++++++++++++++|+++++.+++||+|+||++|+
T Consensus 173 gv~p~q~id~~~L~GD~sDnipGVpGIG~KtA~kLl~~~gsle~i~~~~~~~~~~~~~~l~~~~~~a~ls~~L~~i~~d~ 252 (832)
T 1bgx_T 173 GLRPDQWADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRLKPAIREKILAHMDDLKLSWDLAKVRTDL 252 (832)
T ss_dssp CCCGGGTTTTTTSSCCSSSCCCCCCCSSSCTTTTTGGGTTSSCSSSSSCCCCCTTTSHHHHSSCSSTTSGGGSSCCCSCC
T ss_pred CcCHHHHHHHHHhcCCccccCCCCCCcCchHHHHHHHHCCCHHHHHHHHHHhChHHHHHHHHhHHHHHHHHHHHhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCCCccccccCCCCHHHHHHHHHHccCC
Q psy2882 1016 DLTKNIVSIPESLILQPKDEKLLMQLFNKYNIP 1048 (1428)
Q Consensus 1016 ~l~~~~~~~~~~~~~~~~d~~~l~~l~~~~~f~ 1048 (1428)
|++.++ + .+.++|.++|.+||+++||+
T Consensus 253 ~~~~~~----~--~~~~~d~~~l~~~~~~~~f~ 279 (832)
T 1bgx_T 253 PLEVDF----A--KRREPDRERLRAFLERLEFG 279 (832)
T ss_dssp CCCCCC----C--CCCCCCHHHHHHHHTTTTCC
T ss_pred CCCCCh----h--HcCCccHHHHHHHHHHcCCH
Confidence 999873 4 88999999999999999999
No 4
>2ew0_A Hypothetical protein aciad0353; Q5FF54, ASR1, NESG, structural genomics, PSI, protein struct initiative; 1.40A {Acinetobacter SP} SCOP: d.310.1.1
Probab=100.00 E-value=1.5e-46 Score=403.25 Aligned_cols=182 Identities=36% Similarity=0.698 Sum_probs=160.6
Q ss_pred ccccCceEeecCCCCCCCccceEEEEEEeCCCceEEEEEcCCCCccHHHHhhcccccccccCCCchhhhhcccccceecC
Q psy2882 1072 FNLTNHFLIAMPGFSTPFFDGAVVYLCEHNSNGAFGIIINKPTDMTINILLDNDSNLKLKLVPNTKEFILEKTTKTIMFG 1151 (1428)
Q Consensus 1072 ~~~~G~lLIA~P~l~d~~F~rSVVll~eH~~~Ga~GlILNrP~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~v~~G 1151 (1428)
++++|+||||+|.|.|++|.||||||||||++||||||||||++.+++++++++ ++... .+.+.|||+|
T Consensus 4 ~~l~G~lLIA~P~l~d~~F~rSVIli~eH~~~Ga~GlIlNrP~~~~l~~ll~~l---~~~~~--------~~~~~~v~~G 72 (192)
T 2ew0_A 4 QYLTHRCLIAPPEMADDFFANTVIYLARHDEEGAQGIIINRPAGIQIKELLNDL---DIDAD--------NVNPHEVLQG 72 (192)
T ss_dssp -CCTTEEEECCTTCCCTTTTTCEEEEEEEETTEEEEEECSCEEEEEHHHHHHHT---TCCCT--------TCCCCEEEEC
T ss_pred ccCCCeEEEeCCCCCCCCccceEEEEEEeCCCceeEEEecCCCCCCHHHHHHhh---Ccccc--------cCCCCeeEEC
Confidence 568999999999999999999999999999999999999999999999998763 22110 1236799999
Q ss_pred CccccCeEEEEEecCCCCCCCccccceecCCEeecccHHHHHHhhcCCCCccEEEEEeccCCCCCCcHHHHhcCCeEEec
Q psy2882 1152 GPIQIDRGFVLHNITNEKSPIFNSTLNIASDISLTTSRDILESFSRGDGPSQLLISLGCSGWGAGQLEEEIMNNHWLIVD 1231 (1428)
Q Consensus 1152 GPV~~~~~~~LH~~~~~~~~~~~~~~~i~~gl~l~~~~d~l~~~~~g~~~~~~r~f~GYsGW~pGQLe~Ei~~g~W~v~~ 1231 (1428)
|||+++++|+||+... .+.++.+|.+|||++++.|+++++++|.+|.++|||+|||||+|||||+||++|+|++++
T Consensus 73 GPV~~~rgfvLH~~~~----~~~~s~~v~~gv~lt~s~d~l~~i~~~~~p~~~~~flGYaGW~~GQLe~Ei~~n~Wl~~~ 148 (192)
T 2ew0_A 73 GPLRPEAGFVLHTGQP----TWHSSIAVGENVCITTSKDILDAIAHNEGVGRYQIALGYASWGKNQLEDEIARGDWLICD 148 (192)
T ss_dssp CSEEEEEEEEEEESCC----CSSSEEEEETTEEEECSSHHHHHHHTTCSCCSEEEEEEEEEECTTHHHHHHHTTCCEEEE
T ss_pred CCcCCCcEEEEEeCCC----CCCCceEecCCeeeeCCHHHHHHHhcCCCCccEEEEEeecCCCHHHHHHHHHcCCEEEec
Confidence 9999999999999632 467899999999999999999999998899999999999999999999999999999999
Q ss_pred CCCccccCCCcHHHHHHHHHhcCCCcchhhhhhcccc
Q psy2882 1232 ANSEVIFNVPCEQRFFAAVKLLGVNPLIIGIAFGNTL 1268 (1428)
Q Consensus 1232 a~~~~if~~~~~~~W~~~l~~~~~d~~~i~~~~G~~~ 1268 (1428)
|++++||+++++++|++++++||+|+..++..+.+.+
T Consensus 149 a~~~~lf~~~~~~~W~~al~~lG~~~~~ls~~~~~~~ 185 (192)
T 2ew0_A 149 ADMDLIFNLPYDDRWDAAYKKIGVDRTWLASEIGHAL 185 (192)
T ss_dssp CCHHHHTTSCGGGHHHHHHHHGGGSSCCCCC------
T ss_pred CCHHHhhCCCHHHHHHHHHHHhCCCHHHHHhhhhhhh
Confidence 9999999999999999999999999999887766654
No 5
>2haf_A Putative translation repressor; alpha/beta, X-RAY crystallography, structural genomics, PSI, protein structure initiative; 2.88A {Vibrio cholerae} SCOP: d.310.1.1 PDB: 2aj2_A
Probab=100.00 E-value=1.5e-46 Score=407.85 Aligned_cols=191 Identities=39% Similarity=0.778 Sum_probs=157.3
Q ss_pred ccccCceEeecCCCCCCCccceEEEEEEeCCCceEEEEEcCCCCccHHHHhhcccccccccCCCchhhhhcccccceecC
Q psy2882 1072 FNLTNHFLIAMPGFSTPFFDGAVVYLCEHNSNGAFGIIINKPTDMTINILLDNDSNLKLKLVPNTKEFILEKTTKTIMFG 1151 (1428)
Q Consensus 1072 ~~~~G~lLIA~P~l~d~~F~rSVVll~eH~~~Ga~GlILNrP~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~v~~G 1151 (1428)
++++|+||||||.|.|++|.|||||||+||++||||||||||++.++.++++++ ++.+...+.. ..+.+.|||+|
T Consensus 16 ~~l~G~lLIA~P~L~D~~F~rSVVliceH~~~GamGlIiNrP~~~~l~~ll~~l-~~~~~~~~~~----~~~~~~~v~~G 90 (211)
T 2haf_A 16 MNLTNHFLVAMPSMKDPYFKRSVIYICEHNQDGAMGLMINAPIDITVGGMLKQV-DIEPAYPQSH----QENLKKPVFNG 90 (211)
T ss_dssp CCCTTEEEEECSSCCSGGGTTCEEEEEEEETTEEEEEESSCEEEEEHHHHHHHT-TCCCSSCCCC----CSGGGSEEEEC
T ss_pred CCCCCeEEEeCCCCCCCCcCccEEEEEEeCCCCeeEEEecCCCCCcHHHHHHhh-cccccccccc----ccccCCeEEEC
Confidence 368999999999999999999999999999999999999999999999998864 2111100000 01346799999
Q ss_pred CccccCeEEEEEecCCCCCCCccccceecCCEeecccHHHHHHhhcCCCCccEEEEEeccCCCCCCcHHHHhcCCeEEec
Q psy2882 1152 GPIQIDRGFVLHNITNEKSPIFNSTLNIASDISLTTSRDILESFSRGDGPSQLLISLGCSGWGAGQLEEEIMNNHWLIVD 1231 (1428)
Q Consensus 1152 GPV~~~~~~~LH~~~~~~~~~~~~~~~i~~gl~l~~~~d~l~~~~~g~~~~~~r~f~GYsGW~pGQLe~Ei~~g~W~v~~ 1231 (1428)
|||+++++|+||+... .+.++++|.+|||++++.|++++++.|.+|.++|||+|||||+|||||+||++|+|++++
T Consensus 91 GPV~~~rgfvLH~~~~----~~~~s~~v~~gv~lt~s~dil~~i~~~~~p~~~~~flGYaGW~~GQLE~Ei~~n~Wl~~~ 166 (211)
T 2haf_A 91 GPVSEDRGFILHRPRD----HYESSMKMTDDIAVTTSKDILTVLGTEAEPEGYIVALGYSGWSAGQLEVELTENSWLTIE 166 (211)
T ss_dssp CSEEEEEEEEEECCCS----CCSSEEECSSSCEEECSGGGGGGTTSTTSCSSEEEEEEEEEEETTHHHHHHHTTSEEEEE
T ss_pred CCccCCcEEEEEecCC----CCCCceEecCCeeecCCHHHHHHHhcCCCCccEEEEeeecCCCHHHHHHHHHcCCEEEec
Confidence 9999999999999532 467899999999999999999999988889999999999999999999999999999999
Q ss_pred CCCccccCCCcHHHHHHHHHhcCCCcchhhhhhccccccc
Q psy2882 1232 ANSEVIFNVPCEQRFFAAVKLLGVNPLIIGIAFGNTLIKH 1271 (1428)
Q Consensus 1232 a~~~~if~~~~~~~W~~~l~~~~~d~~~i~~~~G~~~~~~ 1271 (1428)
|++++||+++++++|++++++||+|+..++..+|.+.-++
T Consensus 167 a~~~~lF~~~~~~~W~~al~~lG~d~~~ls~~~G~~~~~~ 206 (211)
T 2haf_A 167 ADPELIFNTPVHEKWQKAIQKLGISPAQLSSDAGHEGGSH 206 (211)
T ss_dssp CCHHHHHSSCGGGHHHHHHHHTSCCC--------------
T ss_pred CCHHHhcCCCHHHHHHHHHHHhCCCHHHHhhhccccCCcc
Confidence 9999999999999999999999999999999999886543
No 6
>2gzo_A UPF0301 protein SO3346; GFT-protein structure, nesgc, alpha-beta, structural genomics, PSI, protein structure initiative; NMR {Shewanella oneidensis} SCOP: d.310.1.1
Probab=100.00 E-value=1.6e-46 Score=403.87 Aligned_cols=185 Identities=36% Similarity=0.710 Sum_probs=163.5
Q ss_pred ccccCceEeecCCCCCCCccceEEEEEEeCCCceEEEEEcCCCCccHHHHhhcccccccccCCCchhhhhcccccceecC
Q psy2882 1072 FNLTNHFLIAMPGFSTPFFDGAVVYLCEHNSNGAFGIIINKPTDMTINILLDNDSNLKLKLVPNTKEFILEKTTKTIMFG 1151 (1428)
Q Consensus 1072 ~~~~G~lLIA~P~l~d~~F~rSVVll~eH~~~Ga~GlILNrP~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~v~~G 1151 (1428)
++++|+||||||.|.|++|.||||||||||++||||||||||++.+++++++++ ++..... .. ..+.+.|||+|
T Consensus 2 ~~l~G~lLIA~P~l~d~~F~rSVVli~eH~~~Ga~GlIiNrP~~~~l~~ll~~l---~~~~~~~--~~-~~~~~~~v~~G 75 (195)
T 2gzo_A 2 ESLQNHFLIAMPSLDDTFFERTVIYLCEHDEKGAMGLVINKPLGIEVNSLLEQM---DLPTEQV--SA-DLAMGSQVLMG 75 (195)
T ss_dssp CCCSSEEEEECTTSCSCSSSSEEEEECCCBTTBCCEEECSSCCCBCHHHHHHHH---TSCSSCC--CC-CCCCCSCBEES
T ss_pred CCCCCeEEEeCCCCCCCCccccEEEEEEeCCCceeEEEecCCCCCcHHHHHHhh---Ccccccc--cc-cccCCCeEEEC
Confidence 467999999999999999999999999999999999999999999999998763 2211100 00 01357799999
Q ss_pred CccccCeEEEEEecCCCCCCCccccceecCCEeecccHHHHHHhhcCCCCccEEEEEeccCCCCCCcHHHHhcCCeEEec
Q psy2882 1152 GPIQIDRGFVLHNITNEKSPIFNSTLNIASDISLTTSRDILESFSRGDGPSQLLISLGCSGWGAGQLEEEIMNNHWLIVD 1231 (1428)
Q Consensus 1152 GPV~~~~~~~LH~~~~~~~~~~~~~~~i~~gl~l~~~~d~l~~~~~g~~~~~~r~f~GYsGW~pGQLe~Ei~~g~W~v~~ 1231 (1428)
|||+++++|+||+... .+.++++|.+|||++++.|+++++++|.+|.++|||+|||||+|||||+||++|+|++++
T Consensus 76 GPV~~~rgfvLH~~~~----~~~~s~~v~~gv~lt~s~dil~~i~~~~~p~~~~~flGYaGW~~GQLE~Ei~~n~Wl~~~ 151 (195)
T 2gzo_A 76 GPVSQDRGFVLHTSQP----YWANSTELGSGLMLTTSRDVLTAIGSKRSPDKFLVALGYAGWSKNQLEQELADNSWLTIP 151 (195)
T ss_dssp CSBTTTSCCEEEECCS----CSSSCCCSSSSEEEECTTHHHHHHTSCCCSSCEECEECBCTHHHHCCHHHHHHHTCEEEE
T ss_pred CCcCCCcEEEEEeCCC----CCCCceEecCCeeeeCCHHHHHHHhcCCCCccEEEEEeecCCCHHHHHHHHHcCCEEEec
Confidence 9999999999999632 467899999999999999999999998899999999999999999999999999999999
Q ss_pred CCCccccCCCcHHHHHHHHHhcCCCcchhhhhhcc
Q psy2882 1232 ANSEVIFNVPCEQRFFAAVKLLGVNPLIIGIAFGN 1266 (1428)
Q Consensus 1232 a~~~~if~~~~~~~W~~~l~~~~~d~~~i~~~~G~ 1266 (1428)
|++++||+++++++|++++++||+|+..++..+..
T Consensus 152 a~~~~lf~~~~~~~W~~al~~lG~~~~~ls~~~~~ 186 (195)
T 2gzo_A 152 ADHALLFDINHEDRWQQASRSLGFEAWQLSTQAGH 186 (195)
T ss_dssp CCHHHHTTSCSSHHHHHHHHCCCCCCCCCCCCCCC
T ss_pred CCHHHhcCCCHHHHHHHHHHHhCCCHHHHHhhhHH
Confidence 99999999999999999999999999988765543
No 7
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Probab=100.00 E-value=3.4e-47 Score=427.53 Aligned_cols=190 Identities=18% Similarity=0.166 Sum_probs=174.4
Q ss_pred hhhhccchhhhhhhccCCcCcCCCCccchHHHH-HHHHHHHHHHh---cCCCEEEEEEeCC-CCCcccCCChhhhcCCCC
Q psy2882 776 YGKIDGSSCIYRAFYALPDIRNIDNFPVGALYG-TIKMLRKLYKN---YRATYIACIFDAK-GKNFRNILYPSYKATRKK 850 (1428)
Q Consensus 776 Y~~i~g~~~~~Ra~~a~~~l~~~~G~~t~av~g-f~~~l~~l~~~---~~p~~~v~~fD~~-~~~fR~~l~p~YKa~R~~ 850 (1428)
..-+|||+++||+|+ +.+.+++|.||||++| |+++|.++++. ++|+|++||||++ ++||||++||+||+||++
T Consensus 15 llLIDgssl~~ra~~--~~f~~~~g~~tnav~ggf~~~L~~ll~~~k~~~P~~iavaFD~~~~~tfR~elyp~YKanR~~ 92 (305)
T 3h7i_A 15 ICLIDFSQIALSTAL--VNFPDKEKINLSMVRHLILNSIKFNVKKAKTLGYTKIVLCIDNAKSGYWRRDFAYYYKKNRGK 92 (305)
T ss_dssp EEEEEHHHHHHHHHH--HHSCSSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHSTTTTHHHHH
T ss_pred EEEEeccHHHHHHHH--HhcCCCCCcchHHHHHHHHHHHHHHHHhhhccCCCEEEEEecCCCCcchHhhhCHHhccCCCC
Confidence 455899999999976 5588999999999988 99999999999 9999999999986 689999999999999999
Q ss_pred CChHHHHHH--------HHHHHHHHHcCCcEEEecchhhHHHHHHHHHHHhhhCCCEEEEEeCCCCcccccc-CcEEEEe
Q psy2882 851 MPYNLILQI--------NLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVS-NKIALIN 921 (1428)
Q Consensus 851 ~p~~l~~q~--------~~i~~~l~~~gi~~i~~~g~EADD~iatla~~~~~~~~~~v~IvS~DkDl~QLv~-~~v~~~~ 921 (1428)
+|++|..|+ +.+++++++||||++..+||||||+|||||+++. +.|.+|+|+|+||||+||++ ++|++++
T Consensus 93 ~PeeL~~Q~~~l~~Qi~p~ike~l~a~gi~~l~~~G~EADDiIgTLA~~a~-~~g~~V~IvSgDKDl~QLv~~~~V~~~~ 171 (305)
T 3h7i_A 93 AREESTWDWEGYFESSHKVIDELKAYMPYIVMDIDKYEANDHIAVLVKKFS-LEGHKILIISSDGDFTQLHKYPNVKQWS 171 (305)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHH-HTTCCEEEECSSCCCGGGGGSSSEEEEE
T ss_pred CCHHHHHHHHHhhhhhHHHHHHHHHHCCCCEEccCCccHHHHHHHHHHHHH-HCCCcEEEEeCCCCccccccCCCeEEEe
Confidence 999988777 8999999999999999999999999999999975 46889999999999999999 8999998
Q ss_pred CCeeccHHHHHHHhCCChhhHHhhhhccccccCCCCCCCccchh------------hHHHHHH
Q psy2882 922 NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPK------------TAVKLLN 972 (1428)
Q Consensus 922 ~~~~~~~~~v~~~~Gv~p~q~~d~~aL~GD~sDnipGvpGIG~K------------tA~kLL~ 972 (1428)
+. +.+.|.++||+ |+|++||++|+||+||||||||||||+ |+.++|.
T Consensus 172 ~~---~~~~V~ek~Gv-P~q~iD~~aL~GDsSDNIPGVpGIG~~~~~~~~ger~~~~~~~~~~ 230 (305)
T 3h7i_A 172 PM---HKKWVKIKSGS-AEIDCMTKILKGDKKDNVASVKVRSDFWFTRVEGERTPSMKTSIVE 230 (305)
T ss_dssp TT---TTEEECSSCSC-HHHHHHHHHHHCBGGGTBCCTTSCTTHHHHCCTTCCCCCCCHHHHH
T ss_pred cC---CHHHHHHHhCC-HHHHhhHHheeCccccCCCCCCcCCcccccccccccCCcchHHHHH
Confidence 64 34668899999 999999999999999999999999997 7777763
No 8
>2do8_A UPF0301 protein HD_1794; NESG, GFT structral genomics, HDR14, structural genomics, PSI, protein structure initiative; NMR {Haemophilus ducreyi} SCOP: d.310.1.1
Probab=100.00 E-value=4.2e-46 Score=399.27 Aligned_cols=182 Identities=37% Similarity=0.751 Sum_probs=160.5
Q ss_pred cccCceEeecCCCCCCCccceEEEEEEeCCCceEEEEEcCCCCccHHHHhhcccccccccCCCchhhhhcccccceecCC
Q psy2882 1073 NLTNHFLIAMPGFSTPFFDGAVVYLCEHNSNGAFGIIINKPTDMTINILLDNDSNLKLKLVPNTKEFILEKTTKTIMFGG 1152 (1428)
Q Consensus 1073 ~~~G~lLIA~P~l~d~~F~rSVVll~eH~~~Ga~GlILNrP~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~v~~GG 1152 (1428)
+++|+||||||.|.|++|+||||||||||++||||||||||++.++.++++++ ++..... ...+.+.|||+||
T Consensus 4 ~l~G~lLIA~P~l~d~~F~rSVVli~eH~~~Ga~GlIlNrp~~~~l~~ll~~~---~~~~~~~----~~~~~~~~v~~GG 76 (188)
T 2do8_A 4 NLQGKFIIATPEMDDEYFDRTVIYICEHNDNGTIGVIINTPTDLSVLELLTRM---DFQMAKP----RIYTQDQMVLNGG 76 (188)
T ss_dssp CCTTEEEECCCSCTTCCSSCCCCEEEEEETTEEEEECSCCEEEEEHHHHHHHT---TCCCCCC----GGGCCCCEEEECC
T ss_pred CCCCeEEEeCCCCCCCCcCccEEEEEEeCCCCceEEEEeCCCCCCHHHHHHhh---ccccccc----ccccCCCeEEECC
Confidence 47999999999999999999999999999999999999999999999998764 2211100 0013577999999
Q ss_pred ccccCeEEEEEecCCCCCCCccccceecCCEeecccHHHHHHhhcCCCCccEEEEEeccCCCCCCcHHHHhcCCeEEecC
Q psy2882 1153 PIQIDRGFVLHNITNEKSPIFNSTLNIASDISLTTSRDILESFSRGDGPSQLLISLGCSGWGAGQLEEEIMNNHWLIVDA 1232 (1428)
Q Consensus 1153 PV~~~~~~~LH~~~~~~~~~~~~~~~i~~gl~l~~~~d~l~~~~~g~~~~~~r~f~GYsGW~pGQLe~Ei~~g~W~v~~a 1232 (1428)
||+++++|+||+.++ ..+.++.+|.+|||++++.|++++++.|.+|.++|||+|||||+|||||+||++|+|++++|
T Consensus 77 PV~~~rgfvLH~~~~---~~~~~s~~v~~gv~lt~s~dil~~i~~~~~p~~~~~~lGYaGW~~GQLe~Ei~~n~Wl~~~a 153 (188)
T 2do8_A 77 PVNQDRGFIVHSKTD---HEFTHSYKVTDDITLTTSGDVLDSFGTQTAPEKFIVCLGCSTWKPHQLEQEIAQNYWLLSEA 153 (188)
T ss_dssp SEEEEEEEEEECCCT---TCCSSEEESSSSCEEECSSHHHHHTTSTTCCSCEEEEEEEEEECTTHHHHHHHTTSSEEEEC
T ss_pred CccCCcEEEEEeCCC---CCCCCcEEecCCeeecCCHHHHHHHhcCCCCccEEEEEeecCCCHHHHHHHHHcCCEEEecC
Confidence 999999999999422 24678999999999999999999999888899999999999999999999999999999999
Q ss_pred CCccccCCCcHHHHHHHHHhcCCCcchhhhhhcc
Q psy2882 1233 NSEVIFNVPCEQRFFAAVKLLGVNPLIIGIAFGN 1266 (1428)
Q Consensus 1233 ~~~~if~~~~~~~W~~~l~~~~~d~~~i~~~~G~ 1266 (1428)
++++||+++++++|++++++||+|+. +..+|.
T Consensus 154 ~~~~lf~~~~~~~W~~al~~lG~~~~--~~~~gh 185 (188)
T 2do8_A 154 NNQTLFETSYLDRWVEANEMLGISGI--LAPAGR 185 (188)
T ss_dssp CTHHHHTTTSSCCSSHHHHTTTSCCC--SSCCCC
T ss_pred CHHHhhCCCHHHHHHHHHHHcCCCCC--CCccCc
Confidence 99999999999999999999999998 555554
No 9
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=100.00 E-value=3e-45 Score=431.03 Aligned_cols=248 Identities=18% Similarity=0.317 Sum_probs=188.8
Q ss_pred hhhhccchhhhhhhccCC-----cCcCCCCccchHHHHHHHHHHHHHHh-cCCCEEEEEEeCCCCCcccCCChhhhcCCC
Q psy2882 776 YGKIDGSSCIYRAFYALP-----DIRNIDNFPVGALYGTIKMLRKLYKN-YRATYIACIFDAKGKNFRNILYPSYKATRK 849 (1428)
Q Consensus 776 Y~~i~g~~~~~Ra~~a~~-----~l~~~~G~~t~av~gf~~~l~~l~~~-~~p~~~v~~fD~~~~~fR~~l~p~YKa~R~ 849 (1428)
-+.+||++++||+|||++ +++|++|.+|+|++||++++.++++. .+| ++|||+++++||+++|++||++|.
T Consensus 20 ~l~IDg~~~l~r~~~a~~~~~g~~l~~~~G~~t~al~g~~~~~~~ll~~~i~P---v~vFDG~~~~~r~~~~~~yk~~R~ 96 (346)
T 2izo_A 20 RVSIDGYNALYQFLAAIRQPDGTPLMDSQGRVTSHLSGLFYRTINILEEGVIP---IYVFDGKPPEQKSEELERRRKAKE 96 (346)
T ss_dssp EEEEEHHHHHHHHHHSCCCC---CCBCSSSCBCHHHHHHHHHHHHHHHHTEEE---EEEECC------------------
T ss_pred EEEEEhHHHHHHHHHhccccccccccccCCCccHHHHHHHHHHHHHHHCCCcE---EEEECCCCcchhhhHHHHHHHHHH
Confidence 456899999999999997 58999999999999999999999986 777 899999989999999999999999
Q ss_pred CCChHHH-----------------------HHHHHHHHHHHHcCCcEEEecchhhHHHHHHHHHHHhhhCCCEEEEEeCC
Q psy2882 850 KMPYNLI-----------------------LQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTND 906 (1428)
Q Consensus 850 ~~p~~l~-----------------------~q~~~i~~~l~~~gi~~i~~~g~EADD~iatla~~~~~~~~~~v~IvS~D 906 (1428)
++|+++. .|++.++++|++||||++.+|| ||||+||+|++. |..+.|+|+|
T Consensus 97 ~~~~~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~ap~-EADa~ia~La~~-----g~~~~I~S~D 170 (346)
T 2izo_A 97 EAERKLERAKSEGKIEELRKYSQAILRLSNIMVEESKKLLRAMGIPIVQAPS-EGEAEAAYLNKL-----GLSWAAASQD 170 (346)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHTCCEEECSS-CHHHHHHHHHHT-----TSSSEEECSS
T ss_pred HhHHHHHHHHhcCCHHHHHHHHhhccCCCHHHHHHHHHHHHHCCCCEEEcCC-cHHHHHHHHHhC-----CCeEEEECCC
Confidence 9999987 7999999999999999999999 999999999973 6778899999
Q ss_pred CCccccccCcEEEEeC-----------------CeeccHHHHHHHhCCChhhHHhhhhccccccCCCC-CCCccchhhHH
Q psy2882 907 KDMAQLVSNKIALINN-----------------NKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNLP-GVKKIGPKTAV 968 (1428)
Q Consensus 907 kDl~QLv~~~v~~~~~-----------------~~~~~~~~v~~~~Gv~p~q~~d~~aL~GD~sDnip-GvpGIG~KtA~ 968 (1428)
+|++|+++++|.+... ...++.+.+.+++|++|+||+|+++|+| |||+| ||||||||||.
T Consensus 171 ~D~l~~~~~~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G--~D~~p~Gv~GIG~KtA~ 248 (346)
T 2izo_A 171 YDAILFGAKRLVRNLTITGKRKLPNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIG--TDYNPDGIRGIGPERAL 248 (346)
T ss_dssp SHHHHTTCSEEEESSCC-----------CCCCCCEEEEHHHHHHHHTCCHHHHHHHHHHHC--CSSSTTCSTTCCHHHHH
T ss_pred CCcceecCCeEEEEecccccccCcccccccccceEEEEHHHHHHHcCCCHHHHHHHHHHcC--CCCCCCCCCCcCHHHHH
Confidence 9999999998776541 1247889999999999999999999999 99999 99999999999
Q ss_pred HHHHHhCCHHHHHHHhhhcchhhhhhHHHhhhhchhhhhhhhccccCCCCCCcCCCccccccCCCCHHHHHHHH-HHccC
Q psy2882 969 KLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLF-NKYNI 1047 (1428)
Q Consensus 969 kLL~~~gsle~i~~~~~~i~~k~~~~l~~~~~~~~~~~~L~~i~~d~~l~~~~~~~~~~~~~~~~d~~~l~~l~-~~~~f 1047 (1428)
+||++|||+|+|++++++++ +. ++.+ ++++++|++|+|+..+ .+++.|.+||.++|.+|| +++||
T Consensus 249 kLi~~~gsle~i~~~~~~~k--~~----~~~~----~~~l~~i~~~~~v~~~----~~~l~~~~~d~~~l~~~~~~~~~f 314 (346)
T 2izo_A 249 KIIKKYGKIEKAMEYGEISK--KD----INFN----IDEIRGLFLNPQVVKP----EEALDLNEPNGEDIINILVYEHNF 314 (346)
T ss_dssp HHHHHSSCC---------------------------CTTHHHHHHSCCCCCC----C-CCCCCCCCHHHHHHHTTTTTCC
T ss_pred HHHHHcCCHHHHHHHHHhcc--CC----CCcc----HHHHHHHhhCCCCCCc----cccCccCCCCHHHHHHHHHHhcCC
Confidence 99999999999999998762 33 2222 5899999999999875 478999999999999999 99999
Q ss_pred C
Q psy2882 1048 P 1048 (1428)
Q Consensus 1048 ~ 1048 (1428)
+
T Consensus 315 ~ 315 (346)
T 2izo_A 315 S 315 (346)
T ss_dssp C
T ss_pred C
Confidence 8
No 10
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=100.00 E-value=6.9e-45 Score=425.36 Aligned_cols=251 Identities=20% Similarity=0.276 Sum_probs=221.8
Q ss_pred hhhhccchhhhhhhccCC----cCcCCCCccchHHHHHHHHHHHHHH-hcCCCEEEEEEeCCCCCcccCCChhhhcCC--
Q psy2882 776 YGKIDGSSCIYRAFYALP----DIRNIDNFPVGALYGTIKMLRKLYK-NYRATYIACIFDAKGKNFRNILYPSYKATR-- 848 (1428)
Q Consensus 776 Y~~i~g~~~~~Ra~~a~~----~l~~~~G~~t~av~gf~~~l~~l~~-~~~p~~~v~~fD~~~~~fR~~l~p~YKa~R-- 848 (1428)
-+.+|||+++||+|||++ +++|++|.||+|++||++++.++++ ..+|.| |||+++++||+++|++||++|
T Consensus 29 ~l~IDgs~~lyr~~~a~~~~~~~l~~~~G~~T~al~g~~~~~~~ll~~~i~P~~---VFDg~~~~~r~~~~~~yk~~R~~ 105 (341)
T 3q8k_A 29 KVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMENGIKPVY---VFDGKPPQLKSGELAKRSERRAE 105 (341)
T ss_dssp EEEEEHHHHHHHHHHHCEETTEECBCTTSCBCHHHHHHHHHHHHHHTTTCEEEE---EECCCCCGGGHHHHHHHHHHHHH
T ss_pred EEEEecHHHHHHHHHccccccCCCCCCCCCCchHHHHHHHHHHHHHHCCCCceE---EEeCCCcccchhhhHHHHHHHhH
Confidence 356899999999999997 6899999999999999999999998 578854 699999999999999999665
Q ss_pred ----------CCCChHH-----------HHHHHHHHHHHHHcCCcEEEecchhhHHHHHHHHHHHhhhCCCEEEEEeCCC
Q psy2882 849 ----------KKMPYNL-----------ILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDK 907 (1428)
Q Consensus 849 ----------~~~p~~l-----------~~q~~~i~~~l~~~gi~~i~~~g~EADD~iatla~~~~~~~~~~v~IvS~Dk 907 (1428)
+++|+++ ..|++.++++|++||||++.+|| ||||+||||+++ |..++|+|+|+
T Consensus 106 ~~~~~~~a~r~~~pe~l~~~~~~~~~vt~~q~~~~~~lL~~~gip~i~ap~-EADd~ia~La~~-----g~v~~i~s~D~ 179 (341)
T 3q8k_A 106 AEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPS-EAEASCAALVKA-----GKVYAAATEDM 179 (341)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTCCEEECSS-CHHHHHHHHHHT-----TSSSEEECSCT
T ss_pred hHHHHHHHHhcCCHHHHHHHHhhcccCCHHHHHHHHHHHHHcCCCEEECCc-cHHHHHHHHHhc-----CCeEEEEcCCc
Confidence 4689999 89999999999999999999999 999999999985 44567899999
Q ss_pred CccccccCcEEEE-e----C---CeeccHHHHHHHhCCChhhHHhhhhccccccCCCCCCCccchhhHHHHHHHhCCHHH
Q psy2882 908 DMAQLVSNKIALI-N----N---NKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLEN 979 (1428)
Q Consensus 908 Dl~QLv~~~v~~~-~----~---~~~~~~~~v~~~~Gv~p~q~~d~~aL~GD~sDnipGvpGIG~KtA~kLL~~~gsle~ 979 (1428)
|++|++++++... + . ...++.+.+.++||++|+||+|+++|+| ||+.|||||||||||.+||++|||+|+
T Consensus 180 D~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G--~D~~~gipGiG~KtA~kll~~~gsle~ 257 (341)
T 3q8k_A 180 DCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLG--SDYCESIRGIGPKRAVDLIQKHKSIEE 257 (341)
T ss_dssp HHHHTTCSEEEESCCCCSSCCCEEEEEEHHHHHHHHTCCHHHHHHHHHHHC--CSSSCCCTTCCHHHHHHHHHHHCSHHH
T ss_pred cccccCCcEEEEcccccccCCCceEEEcHHHHHHHhCCCHHHHHHHHHhcC--CCCCCCCCCccHHHHHHHHHHcCCHHH
Confidence 9999999876321 1 1 1458899999999999999999999999 888889999999999999999999999
Q ss_pred HHHHhhhcchhhhhhHHHhhhhchhhhhhhhccccCCCCCCcCCCccccccCCCCHHHHHHHH-HHccCC
Q psy2882 980 IINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLF-NKYNIP 1048 (1428)
Q Consensus 980 i~~~~~~i~~k~~~~l~~~~~~~~~~~~L~~i~~d~~l~~~~~~~~~~~~~~~~d~~~l~~l~-~~~~f~ 1048 (1428)
|++++++++.++.+++. + ..+++|. +++||+.+.+ +++.|.+||.++|.+|| +++||+
T Consensus 258 i~~~~~~~k~~~~~~~~-~----~~~r~l~-l~~~V~~~~~-----~~l~~~~pd~~~l~~fl~~~~~f~ 316 (341)
T 3q8k_A 258 IVRRLDPNKYPVPENWL-H----KEAHQLF-LEPEVLDPES-----VELKWSEPNEEELIKFMCGEKQFS 316 (341)
T ss_dssp HHHHSCTTTSCCCTTCC-H----HHHHHHH-HSCCCCCTTT-----SCCCCCCCCHHHHHHHHTTTTCCC
T ss_pred HHHHHHhcCCCCCcccc-h----HHHHHHh-CCCCCCCCcc-----cccCCCCCCHHHHHHHHHHhcCCC
Confidence 99999988877776665 3 2388888 9999987654 67899999999999999 999999
No 11
>2gs5_A Conserved hypothetical protein; corvnebacterium diphtheria, structural genomics, PSI; 1.50A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID} SCOP: d.310.1.1 PDB: 2hrx_A
Probab=100.00 E-value=3.8e-44 Score=386.72 Aligned_cols=170 Identities=15% Similarity=0.252 Sum_probs=154.1
Q ss_pred cccCceEeecCCCCCCCccceEEEEEEeCCCceEEEEEcCCCCccHHHHhhcccccccccCCCchhhhhcccccceecCC
Q psy2882 1073 NLTNHFLIAMPGFSTPFFDGAVVYLCEHNSNGAFGIIINKPTDMTINILLDNDSNLKLKLVPNTKEFILEKTTKTIMFGG 1152 (1428)
Q Consensus 1073 ~~~G~lLIA~P~l~d~~F~rSVVll~eH~~~Ga~GlILNrP~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~v~~GG 1152 (1428)
+++|+||||||.|.|++|+|||||||||+++||||||||||++.+++++++++ ... ...+.|||+||
T Consensus 15 ~l~G~lLIA~P~L~d~~F~rSVVli~eH~~~Ga~GlIlNrp~~~~l~~ll~~~---~~~----------~~~~~~v~~GG 81 (198)
T 2gs5_A 15 PAPGMVLVAAPSMESEDFARSVILIIEHSEYATFGVNLASRSDVAVFNVIPEW---VPC----------VTKPQALYIGG 81 (198)
T ss_dssp CCTTEEEEECTTCCCTTTTTCEEEEEEECSSCEEEEESSCEEEEEGGGTCGGG---GGG----------CCSSCEEEECC
T ss_pred CCCCeEEEeCCCCCCCCccccEEEEEEeCCCCeeEEEecCCCCCCHHHHHHhh---ccc----------ccCCCeEEECC
Confidence 68999999999999999999999999999999999999999999999997653 111 12467999999
Q ss_pred ccccCeEEEEEecCCCCCCCc----cccceecCC----EeecccHHHHHHhhcCCCCccEEEEEeccCCCCCCcHHHHhc
Q psy2882 1153 PIQIDRGFVLHNITNEKSPIF----NSTLNIASD----ISLTTSRDILESFSRGDGPSQLLISLGCSGWGAGQLEEEIMN 1224 (1428)
Q Consensus 1153 PV~~~~~~~LH~~~~~~~~~~----~~~~~i~~g----l~l~~~~d~l~~~~~g~~~~~~r~f~GYsGW~pGQLe~Ei~~ 1224 (1428)
||+++++|+||+.+. .+ .++++|.+| +|++++.|++++++ +++|||+|||||+|||||+||++
T Consensus 82 PV~~~~gfvLH~~~~----~~~~~~~~s~~v~~g~~~~v~l~~s~d~l~~~~-----~~~~~flGYaGW~~GQLe~Ei~~ 152 (198)
T 2gs5_A 82 PLNQQSVVGVGVTAQ----GVDAARVDNLTRLANRLVMVNLGADPEEIKPLV-----SGMRLFAGHAEWAPGQLAQEIEN 152 (198)
T ss_dssp SEEEEEEEEEEEECT----TCCGGGCTTEEEEETTEEEECTTSCHHHHGGGE-----EEEEEEEEEEEECTTHHHHHHHT
T ss_pred CccCCeEEEEEecCc----cccccCCCceEecCCCceeEEEcCCHHHHHHHh-----hccEEEeeEcCCChHHHHHHHHc
Confidence 999999999999642 23 678999999 99999999999987 67999999999999999999999
Q ss_pred CCeEEecCCCccccCCCcHHHHHHHHHhcCCCcchhhhhh
Q psy2882 1225 NHWLIVDANSEVIFNVPCEQRFFAAVKLLGVNPLIIGIAF 1264 (1428)
Q Consensus 1225 g~W~v~~a~~~~if~~~~~~~W~~~l~~~~~d~~~i~~~~ 1264 (1428)
|+|++++|++++||+++++++|++++++||+|+..++...
T Consensus 153 n~Wl~~~a~~~~lf~~~~~~~W~~al~~lG~~~~~ls~~p 192 (198)
T 2gs5_A 153 GDWFVAPALPSDVTAPGSVDVWGDVMRRQPMPLPLYSTFP 192 (198)
T ss_dssp TSEEEEECCHHHHHCCTTCCHHHHHHHTSSTTGGGGCCCC
T ss_pred CCEEEecCCHHHhcCCCHHHHHHHHHHHcCCCHHHhcCCC
Confidence 9999999999999999999999999999999999886554
No 12
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=100.00 E-value=6.4e-44 Score=418.51 Aligned_cols=243 Identities=15% Similarity=0.242 Sum_probs=214.8
Q ss_pred hhhhccchhhhhhhccCC-----cCcCCCCccchHHHHHHHHHHHHHHhc-CCCEEEEEEeCCCCCcccCCChhhhcCCC
Q psy2882 776 YGKIDGSSCIYRAFYALP-----DIRNIDNFPVGALYGTIKMLRKLYKNY-RATYIACIFDAKGKNFRNILYPSYKATRK 849 (1428)
Q Consensus 776 Y~~i~g~~~~~Ra~~a~~-----~l~~~~G~~t~av~gf~~~l~~l~~~~-~p~~~v~~fD~~~~~fR~~l~p~YKa~R~ 849 (1428)
-+.+||++++||+|||++ ++++++|.+|+|++||++++.++++.. +| +||||+++++||+++|++||++|.
T Consensus 23 ~l~IDg~~~l~r~~~a~~~~~~~~l~~~~G~~t~a~~g~~~~l~~ll~~~i~P---v~vFDg~~~~~R~~~~~~yk~~R~ 99 (336)
T 1rxw_A 23 KIAVDAFNTLYQFISIIRQPDGTPLKDSQGRITSHLSGILYRVSNMVEVGIRP---VFVFDGEPPEFKKAEIEERKKRRA 99 (336)
T ss_dssp EEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHHHTCEE---EEEECCSCCGGGHHHHHHHHHHHH
T ss_pred EEEEEhHHHHHHHHHhhccccCCcccccCCCccHHHHHHHHHHHHHHHCCCEE---EEEEcCCCCcccccchHHHHHHHH
Confidence 356899999999999987 688999999999999999999998864 67 899999999999999999999999
Q ss_pred CCC-----------hHHHH-----------HHHHHHHHHHHcCCcEEEecchhhHHHHHHHHHHHhhhCCCEEEEEeCCC
Q psy2882 850 KMP-----------YNLIL-----------QINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDK 907 (1428)
Q Consensus 850 ~~p-----------~~l~~-----------q~~~i~~~l~~~gi~~i~~~g~EADD~iatla~~~~~~~~~~v~IvS~Dk 907 (1428)
++| +++.. |++.++++|++||||++.+|| |||+.||++++ .|..+.|+|+|+
T Consensus 100 ~~~~~~~~~~~~g~~~l~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~apg-eAEA~lA~la~-----~g~~~~I~S~D~ 173 (336)
T 1rxw_A 100 EAEEMWIAALQAGDKDAKKYAQAAGRVDEYIVDSAKTLLSYMGIPFVDAPS-EGEAQAAYMAA-----KGDVEYTGSQDY 173 (336)
T ss_dssp HHHHHHHHHHHHTCTTHHHHHHHHCCCCHHHHHHHHHHHHHTTCCEEECSS-CHHHHHHHHHH-----TTSSSEEECSSS
T ss_pred HHHHHHHHHHHhchHHHHHHHHhhccCCHHHHHHHHHHHHhCCCCEEEcCc-hHHHHHHHHHH-----cCCeeEEEcCCC
Confidence 999 66655 899999999999999999998 89999999984 367789999999
Q ss_pred CccccccCcE----EEEe-------------CCeeccHHHHHHHhCCChhhHHhhhhccccccCCCCCCCccchhhHHHH
Q psy2882 908 DMAQLVSNKI----ALIN-------------NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKL 970 (1428)
Q Consensus 908 Dl~QLv~~~v----~~~~-------------~~~~~~~~~v~~~~Gv~p~q~~d~~aL~GD~sDnipGvpGIG~KtA~kL 970 (1428)
|++||++++| .+.. ....++.+.+.++||++|+||+|+++|+| |||+|||||||||||.+|
T Consensus 174 Dllql~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G--sD~ipGv~GiG~KtA~kL 251 (336)
T 1rxw_A 174 DSLLFGSPRLARNLAITGKRKLPGKNVYVDVKPEIIILESNLKRLGLTREQLIDIAILVG--TDYNEGVKGVGVKKALNY 251 (336)
T ss_dssp HHHHTTCSEEEESCCC-------------CCCCEEEEHHHHHHHHTCCHHHHHHHHHHHC--BTTBCCCTTCCHHHHHHH
T ss_pred CcceecCCeEEEeccccccccCCccccccccceEEeEHHHHHHHcCCCHHHHHHHHhhcC--CCCCCCCCCcCHHHHHHH
Confidence 9999999988 3331 11357889999999999999999999999 999999999999999999
Q ss_pred HHHhCCHHHHHHHhhhcchhhhhhHHHhhhhchhhhhhhhccccCCCCCCcCCCccccccCCCCHHHHHHHH-HHccCC
Q psy2882 971 LNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLF-NKYNIP 1048 (1428)
Q Consensus 971 L~~~gsle~i~~~~~~i~~k~~~~l~~~~~~~~~~~~L~~i~~d~~l~~~~~~~~~~~~~~~~d~~~l~~l~-~~~~f~ 1048 (1428)
|++|||+|+|++++++ ++. +. .+|++|++|+|++ + .+++.|++||.++|.+|| +++||+
T Consensus 252 l~~~gsle~i~~~~~~-------~l~-~~------~~l~~i~~~~~v~-~----~~~~~~~~~d~~~l~~~~~~~~~f~ 311 (336)
T 1rxw_A 252 IKTYGDIFRALKALKV-------NID-HV------EEIRNFFLNPPVT-D----DYRIEFREPDFEKAIEFLCEEHDFS 311 (336)
T ss_dssp HHHHSSHHHHHHHHTC------------C------HHHHHHHHSCCCC-C----CCCCCCCCCCHHHHHHHHTTTTCCC
T ss_pred HHHcCCHHHHHHhCCC-------CCc-cH------HHHHHHHhCCCCC-C----cccccCCCCCHHHHHHHHHHccCCC
Confidence 9999999999999872 232 11 2899999999998 4 378999999999999999 999998
No 13
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=100.00 E-value=2.2e-42 Score=403.98 Aligned_cols=238 Identities=16% Similarity=0.262 Sum_probs=212.3
Q ss_pred hhhhccchhhhhhhccCC-----cCcCCCCccchHHHHHHHHHHHHHH-hcCCCEEEEEEeCCCCCcccCCChhhhcCCC
Q psy2882 776 YGKIDGSSCIYRAFYALP-----DIRNIDNFPVGALYGTIKMLRKLYK-NYRATYIACIFDAKGKNFRNILYPSYKATRK 849 (1428)
Q Consensus 776 Y~~i~g~~~~~Ra~~a~~-----~l~~~~G~~t~av~gf~~~l~~l~~-~~~p~~~v~~fD~~~~~fR~~l~p~YKa~R~ 849 (1428)
-+.+||++++||+|||++ ++++++|.+|++++||++++.+++. ..+| +||||+.+++||++.|++||++|+
T Consensus 23 ~l~IDg~~~l~r~~~a~~~~~~~~l~~~~G~~t~~l~g~~~~l~~ll~~~i~P---v~vFDG~~~~~k~~~~~~yk~~R~ 99 (326)
T 1a76_A 23 KVAIDGMNALYQFLTSIRLRDGSPLRNRKGEITSAYNGVFYKTIHLLENDITP---IWVFDGEPPKLKEKTRKVRREMKE 99 (326)
T ss_dssp EEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHHTTCEE---EEEECCCSSCCCCSSCCSSCSSSC
T ss_pred EEEEEhHHHHHHHHHhhccccccccccccCCccHHHHHHHHHHHHHHHCCCeE---EEEEeCcCcccchhhHHHHHHHHH
Confidence 456899999999999987 5889999999999999999999943 3556 899999999999999999999999
Q ss_pred CCChHHHH-----------------------HHHHHHHHHHHcCCcEEEecchhhHHHHHHHHHHHhhhCCCEEEEEeCC
Q psy2882 850 KMPYNLIL-----------------------QINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTND 906 (1428)
Q Consensus 850 ~~p~~l~~-----------------------q~~~i~~~l~~~gi~~i~~~g~EADD~iatla~~~~~~~~~~v~IvS~D 906 (1428)
++|+++.. |++.++++|+++|||++.+|| ||||+||||+++ |..+.|+|+|
T Consensus 100 ~~~~~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~~~~lL~~~gi~~i~apg-EAD~~ia~La~~-----g~~~~I~S~D 173 (326)
T 1a76_A 100 KAELKMKEAIKKEDFEEAAKYAKRVSYLTPKMVENCKYLLSLMGIPYVEAPS-EGEAQASYMAKK-----GDVWAVVSQD 173 (326)
T ss_dssp SSCSCCCCCCSHHHHHTTSTTGGGGCSSCHHHHHHHHHHHHHHTCCEEECSS-CHHHHHHHHHHT-----TSSSEEECSS
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCCeEECCc-cHHHHHHHHHHC-----CCEEEEecCC
Confidence 99998865 999999999999999999999 999999999985 5678899999
Q ss_pred CCccccccCcEEEEeC-----CeeccHHHHHHHhCCChhhHHhhhhccccccCCCC-CCCccchhhHHHHHHHhCCHHHH
Q psy2882 907 KDMAQLVSNKIALINN-----NKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNLP-GVKKIGPKTAVKLLNQYNSLENI 980 (1428)
Q Consensus 907 kDl~QLv~~~v~~~~~-----~~~~~~~~v~~~~Gv~p~q~~d~~aL~GD~sDnip-GvpGIG~KtA~kLL~~~gsle~i 980 (1428)
+|++|+++++|.+..+ ...++.+.+.+++|++|+||+|+++|+| |||+| ||||||||||.+||++ ||+|+|
T Consensus 174 ~Dll~~~~~~v~~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G--sD~~p~GvpGiG~ktA~kli~~-gsle~i 250 (326)
T 1a76_A 174 YDALLYGAPRVVRNLTTTKEMPELIELNEVLEDLRISLDDLIDIAIFMG--TDYNPGGVKGIGFKRAYELVRS-GVAKDV 250 (326)
T ss_dssp SGGGGGTCSEEEESSSSCSSCCEEEEHHHHHHHHTCCHHHHHHHHHHHC--CTTSTTTTTTCCHHHHHHHHHH-TCHHHH
T ss_pred cccceecCCEEEEeecCCCCceEEEEHHHHHHHcCCCHHHHHHHHHHcC--CCCCCCCCCCcCHHHHHHHHHc-CCHHHH
Confidence 9999999988766432 2468999999999999999999999999 99999 9999999999999999 999999
Q ss_pred H-HHhhhcchhhhhhHHHhhhhchhhhhhhhccccCCCCCCcCCCccccccCCCCHHHHHHH-HHHccCC
Q psy2882 981 I-NNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQL-FNKYNIP 1048 (1428)
Q Consensus 981 ~-~~~~~i~~k~~~~l~~~~~~~~~~~~L~~i~~d~~l~~~~~~~~~~~~~~~~d~~~l~~l-~~~~~f~ 1048 (1428)
+ +++++++ +.+ .++++++|++ |+ ++.|.+||.++|.+| ++++||+
T Consensus 251 ~~~~~~~~~-----~~~----~~~l~~~l~~---~~-----------~~~~~~~d~~~l~~~~~~~~~f~ 297 (326)
T 1a76_A 251 LKKEVEYYD-----EIK----RIFKEPKVTD---NY-----------SLSLKLPDKEGIIKFLVDENDFN 297 (326)
T ss_dssp HHHHSTTHH-----HHH----HHHHSCCCCC---CC-----------CCCCCCCCHHHHHHHHTTTTCCC
T ss_pred HHHHHhHHH-----HHH----HHHhCCCCCC---Cc-----------cCCCCCCCHHHHHHHHHHhcCCC
Confidence 9 9998662 122 6789999887 33 346788999999999 6999999
No 14
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=100.00 E-value=4.7e-42 Score=408.03 Aligned_cols=250 Identities=19% Similarity=0.278 Sum_probs=203.2
Q ss_pred hhhhccchhhhhhhccCCc----CcCCCCccchHHHHHHHHHHHHHHh-cCCCEEEEEEeCCCCCcccCCChhhhcCCCC
Q psy2882 776 YGKIDGSSCIYRAFYALPD----IRNIDNFPVGALYGTIKMLRKLYKN-YRATYIACIFDAKGKNFRNILYPSYKATRKK 850 (1428)
Q Consensus 776 Y~~i~g~~~~~Ra~~a~~~----l~~~~G~~t~av~gf~~~l~~l~~~-~~p~~~v~~fD~~~~~fR~~l~p~YKa~R~~ 850 (1428)
-+.+||++++||+|||++. ++|++|.+|++++||++++.++++. .+|. +|||+.+++||+++|++||++|.+
T Consensus 29 ~l~IDg~~~lyr~~~a~~~~~~~l~~~~G~~t~~l~g~~~~~~~ll~~~i~P~---~VFDG~~~~~K~~~~~~yk~~R~~ 105 (379)
T 1ul1_X 29 KVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYRTIRMMENGIKPV---YVFDGKPPQLKSGELAKRSERRAE 105 (379)
T ss_dssp CEEEEHHHHHHHHHSCC-------------CCHHHHHHHHHHHHHHHTTCCEE---EEECCSCCSCCCCCCCCC------
T ss_pred EEEEEchHHHHHHHHhCCCcccccCcCCCCCchHHHHHHHHHHHHHHCCCCeE---EEEeCCCcccccchHHHHHhhhhH
Confidence 4578999999999999873 8899999999999999999999986 7884 479999999999999999999998
Q ss_pred C------------ChHH-----------HHHHHHHHHHHHHcCCcEEEecchhhHHHHHHHHHHHhhhCCCEEEEEeCCC
Q psy2882 851 M------------PYNL-----------ILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDK 907 (1428)
Q Consensus 851 ~------------p~~l-----------~~q~~~i~~~l~~~gi~~i~~~g~EADD~iatla~~~~~~~~~~v~IvS~Dk 907 (1428)
+ |+++ ..|++.++++|++||||++.+|| ||||+||+|+++ +..+.|+|+|+
T Consensus 106 ~~~~~~~~~~~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~Gi~~i~apg-EADd~iA~La~~-----g~~~~iiS~D~ 179 (379)
T 1ul1_X 106 AEKQLQQAQAAGAEQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPS-EAEASCAALVKA-----GKVYAAATEDM 179 (379)
T ss_dssp -----------------------CCCCCCSCHHHHHHHHHHHTCCEEECSS-CHHHHHHHHHHH-----TSSSEEECSCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHhhccCCCHHHHHHHHHHHHHcCCCeecCCC-cHHHHHHHHHhc-----CCeEEEEecCc
Confidence 8 6666 67899999999999999999999 999999999986 34577999999
Q ss_pred CccccccCcEEEEeC--------CeeccHHHHHHHhCCChhhHHhhhhccc-cccCCCCCCCccchhhHHHHHHHhCCHH
Q psy2882 908 DMAQLVSNKIALINN--------NKIHDRTTIISRFGVSPEKIVDYFSLIG-DMSDNLPGVKKIGPKTAVKLLNQYNSLE 978 (1428)
Q Consensus 908 Dl~QLv~~~v~~~~~--------~~~~~~~~v~~~~Gv~p~q~~d~~aL~G-D~sDnipGvpGIG~KtA~kLL~~~gsle 978 (1428)
|++|+++++|.+..+ ...++.+.+.+++|++|+||+|+++|+| |.+||| ||||||||.+||++|||+|
T Consensus 180 Dll~~g~~~v~~~~~~~~~~k~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~D~~d~I---pGIG~KtA~kLl~~~gsle 256 (379)
T 1ul1_X 180 DCLTFGSPVLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESI---RGIGPKRAVDLIQKHKSIE 256 (379)
T ss_dssp HHHHTTCSEEEECSSCCC-CCCCEEEEEHHHHHHHHTCCHHHHHHHHHHHHCSSSCCC---TTCCHHHHHHHHHHSSSHH
T ss_pred CccccccceEEEEecccccCcCCeEEEeHHHHHHHhCCCHHHHHHHHHHhCCCcCCCC---CCcCHHHHHHHHHHcCCHH
Confidence 999999998766431 2358899999999999999999999999 666655 6889999999999999999
Q ss_pred HHHHHhhhcchhhhhhHHHhhhhchhhhhhhhccccCCCCCCcCCCccccccCCCCHHHHHH-HHHHccCC
Q psy2882 979 NIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQ-LFNKYNIP 1048 (1428)
Q Consensus 979 ~i~~~~~~i~~k~~~~l~~~~~~~~~~~~L~~i~~d~~l~~~~~~~~~~~~~~~~d~~~l~~-l~~~~~f~ 1048 (1428)
+|++++++++.++.+++... .+++|+ +++|++.+.+ + ++.|.+||.++|.+ +++++||+
T Consensus 257 ~i~~~~~~~k~~~~~~~~~~-----~ar~l~-l~~~v~~~~~----~-~l~~~~pd~~~l~~fl~~~~~f~ 316 (379)
T 1ul1_X 257 EIVRRLDPNKYPVPENWLHK-----EAHQLF-LEPEVLDPES----V-ELKWSEPNEEELIKFMCGEKQFS 316 (379)
T ss_dssp HHHTTCCCTTSCCCSSCCHH-----HHHHHH-HSCCCCCGGG----C-CCCCCCCCHHHHHHHTTTTSCCC
T ss_pred HHHHHHHhhcccCCCcCCHH-----HHHHHh-cCCeeCCCCC----c-cCCCCCCCHHHHHHHHHHHcCCC
Confidence 99999998877666666432 488998 9999998765 3 78999999999999 68899997
No 15
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=100.00 E-value=2.2e-42 Score=406.63 Aligned_cols=245 Identities=17% Similarity=0.255 Sum_probs=214.9
Q ss_pred hhhhccchhhhhhhccCC-----cCcCCCCccchHHHHHHHHHHHHHHh-cCCCEEEEEEeCCCCCcccCCChhhhcCCC
Q psy2882 776 YGKIDGSSCIYRAFYALP-----DIRNIDNFPVGALYGTIKMLRKLYKN-YRATYIACIFDAKGKNFRNILYPSYKATRK 849 (1428)
Q Consensus 776 Y~~i~g~~~~~Ra~~a~~-----~l~~~~G~~t~av~gf~~~l~~l~~~-~~p~~~v~~fD~~~~~fR~~l~p~YKa~R~ 849 (1428)
-+.+|||+++||+|++++ +++|++|.+|+|++||++++.++++. .+| ++|||+++++||+++|++||++|+
T Consensus 37 ~l~IDg~~~l~r~~~~~~~~~g~~l~~~~G~~T~al~gf~~r~~~ll~~~i~P---v~VFDg~~p~~K~~~~~~yK~~R~ 113 (363)
T 3ory_A 37 IIVIDGYNALYQFLAAIRQPDGTPLMDNNGRITSHLSGLFYRTINIVEAGIKP---VYVFDGKPPELKAREIERRKAVKE 113 (363)
T ss_dssp EEEEEHHHHHHHHHHHCBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHHTTCEE---EEEECSSCGGGCHHHHHHHHHHHH
T ss_pred EEEEehHHHHHHHHHhhhccCCCccCCCCCCCccHHHHHHHHHHHHHHcCCCc---EEEEcCCCccchHHHHHHHHHhhh
Confidence 356899999999888764 58999999999999999999998874 677 688999999999999999999999
Q ss_pred CCChHHHHH-----------------------HHHHHHHHHHcCCcEEEecchhhHHHHHHHHHHHhhhCCCEEEEEeCC
Q psy2882 850 KMPYNLILQ-----------------------INLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTND 906 (1428)
Q Consensus 850 ~~p~~l~~q-----------------------~~~i~~~l~~~gi~~i~~~g~EADD~iatla~~~~~~~~~~v~IvS~D 906 (1428)
++|+++..| ++.++++|++||||++.+|| ||||+||+|++. |..+.|+|+|
T Consensus 114 ~~~e~l~~~~~~g~~~~a~~~~~~~~~vt~~~~~~i~~lL~~~GIp~i~apg-EADaqiA~La~~-----g~~~~I~S~D 187 (363)
T 3ory_A 114 EAAKKYEEAVQSGDLELARRYAMMSAKLTEEMVRDAKSLLDAMGIPWVQAPA-EGEAQAAYIVKK-----GDAYASASQD 187 (363)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHTCCCCCCCHHHHHHHHHHHHHHTCCEEECSS-CHHHHHHHHHHT-----TSCSEEECSS
T ss_pred hchHHHHHHHHcCCHHHHHHHHhccccCCHHHHHHHHHHHHHCCCCEEEeCc-cHHHHHHHHHHC-----CCeEEEECCC
Confidence 999999886 99999999999999999999 999999999853 6788999999
Q ss_pred CCccccccCcEEEEeC-----------------CeeccHHHHHHHhCCChhhHHhhhhccccccCCCC-CCCccchhhHH
Q psy2882 907 KDMAQLVSNKIALINN-----------------NKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNLP-GVKKIGPKTAV 968 (1428)
Q Consensus 907 kDl~QLv~~~v~~~~~-----------------~~~~~~~~v~~~~Gv~p~q~~d~~aL~GD~sDnip-GvpGIG~KtA~ 968 (1428)
+|++|+++++|...-. ...++.+.+.+++|++|+|++|+++|+| |||+| ||||||||||.
T Consensus 188 ~D~l~fg~~~v~~~l~~~~~~~~p~~~~~v~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G--sDy~p~GVpGIG~KtA~ 265 (363)
T 3ory_A 188 YDSLLFGSPKLVRNLTISGRRKLPRKNEYVEVKPELIELDKLLVQLGITLENLIDIGILLG--TDYNPDGFEGIGPKKAL 265 (363)
T ss_dssp SHHHHTTCSEEEESTTTCEEEECSSTTCEEEECCEEEEHHHHHHHHTCCHHHHHHHHHHHC--BTTBTTCSTTCCHHHHH
T ss_pred cCccccCCCeEEEEeeccccccCCccccccccceEEEcHHHHHHHhCcCHHHHHHHHHHhC--CCCCCCCCCCcCHHHHH
Confidence 9999999988754211 1358889999999999999999999999 99999 99999999999
Q ss_pred HHHHHhCCHHHHHHHhhhcchhhhhhHHHhhhhchhhhhhhhccccCCCCCCcCCCccccccCCCCHHHHHHHH-HHccC
Q psy2882 969 KLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLF-NKYNI 1047 (1428)
Q Consensus 969 kLL~~~gsle~i~~~~~~i~~k~~~~l~~~~~~~~~~~~L~~i~~d~~l~~~~~~~~~~~~~~~~d~~~l~~l~-~~~~f 1047 (1428)
+||++|||+|+|+++++..+ + + +-.++...++.++++..+ .++.|..||.++|++|| ++++|
T Consensus 266 kLl~~~gsle~il~~~~~~~------~----~--~~~~~~~~~f~~p~v~~~-----~~~~w~~pd~~~l~~fl~~~~~f 328 (363)
T 3ory_A 266 QLVKAYGGIEKIPKPILKSP------I----E--VDVIAIKKYFLQPQVTDN-----YRIEWHTPDPDAVKRILVDEHDF 328 (363)
T ss_dssp HHHHHHTSSTTSCGGGCCCS------S----C--CCHHHHHHHHHSCCCCSC-----CCCCCCCCCHHHHHHHHTTTTCC
T ss_pred HHHHHcCCHHHHHHhccccc------C----C--CCHHHHHHHhcCCCCCCC-----CCCCCCCCCHHHHHHHHHhccCC
Confidence 99999999999999987411 0 1 234567777888888765 46999999999999955 88999
Q ss_pred C
Q psy2882 1048 P 1048 (1428)
Q Consensus 1048 ~ 1048 (1428)
+
T Consensus 329 ~ 329 (363)
T 3ory_A 329 S 329 (363)
T ss_dssp C
T ss_pred C
Confidence 8
No 16
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=100.00 E-value=4.1e-41 Score=395.30 Aligned_cols=242 Identities=14% Similarity=0.202 Sum_probs=212.7
Q ss_pred hhhhccchhhhhhhccCC-----cCcCCCCccchHHHHHHHHHHHHHHhcCCCEEEEEEeCCCCCcccCCCh--------
Q psy2882 776 YGKIDGSSCIYRAFYALP-----DIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRNILYP-------- 842 (1428)
Q Consensus 776 Y~~i~g~~~~~Ra~~a~~-----~l~~~~G~~t~av~gf~~~l~~l~~~~~p~~~v~~fD~~~~~fR~~l~p-------- 842 (1428)
-+.+||++++||+|||++ +++|+.|.+|++++||++++.++++ .|.+++||||+++++||++.++
T Consensus 23 ~l~ID~~~~l~r~~~a~~~~~~~~l~~~~G~~t~~l~g~~~~l~~ll~--~~i~pv~VFDG~~~~~K~~~~~~R~~~r~~ 100 (340)
T 1b43_A 23 KIAIDALNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLFYRTINLME--AGIKPVYVFDGEPPEFKKKELEKRREAREE 100 (340)
T ss_dssp EEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHH--TTCEEEEEECCSCCCCSSCSSTTCCCCTTH
T ss_pred EEEEEhHHHHHHHHHHhccccCCccccccCCchHHHHHHHHHHHHHHh--CCCEEEEEecCCCchhhhhhHHHHHHHHHH
Confidence 356899999999999986 5889999999999999999999986 7899999999999999999998
Q ss_pred -------hhhcCCCCCChHH--------HHHHHHHHHHHHHcCCcEEEecchhhHHHHHHHHHHHhhhCCCEEEEEeCCC
Q psy2882 843 -------SYKATRKKMPYNL--------ILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDK 907 (1428)
Q Consensus 843 -------~YKa~R~~~p~~l--------~~q~~~i~~~l~~~gi~~i~~~g~EADD~iatla~~~~~~~~~~v~IvS~Dk 907 (1428)
.||++|.++|+++ ..|++.++++|++||||++.+| |||||+||+|+++ |..+.|+|+|+
T Consensus 101 ~~~~~~~~yk~g~~~~~~~~~~~~~~vt~~~~~~~~~lL~~~gip~i~ap-~EADa~iA~La~~-----g~~~~i~S~D~ 174 (340)
T 1b43_A 101 AEEKWREALEKGEIEEARKYAQRATRVNEMLIEDAKKLLELMGIPIVQAP-SEGEAQAAYMAAK-----GSVYASASQDY 174 (340)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHTSGGGTHHHHHHHHHHHHHHTCCEEECS-SCHHHHHHHHHHH-----TSSSEEECSSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCcEEEcC-hhHHHHHHHHHHc-----CCEEEEEccCC
Confidence 7999999999998 8899999999999999999999 8999999999986 45678999999
Q ss_pred CccccccCcEEEEeCC-----------------eeccHHHHHHHhCCChhhHHhhhhccccccCCCC-CCCccchhhHHH
Q psy2882 908 DMAQLVSNKIALINNN-----------------KIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNLP-GVKKIGPKTAVK 969 (1428)
Q Consensus 908 Dl~QLv~~~v~~~~~~-----------------~~~~~~~v~~~~Gv~p~q~~d~~aL~GD~sDnip-GvpGIG~KtA~k 969 (1428)
|++|+.+++|.+..+. ..++.+.+.+++|++|+||+|+++|+| |||+| ||||||||||.+
T Consensus 175 D~l~~g~~~v~~~~~~~~~~~~p~~~~~v~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G--~Dy~p~gv~GiG~ktA~k 252 (340)
T 1b43_A 175 DSLLFGAPRLVRNLTITGKRKLPGKNVYVEIKPELIILEEVLKELKLTREKLIELAILVG--TDYNPGGIKGIGLKKALE 252 (340)
T ss_dssp HHHHTTCSEEEESTTTCEEEECTTSSCEEEECCEEEEHHHHHHHHTCCHHHHHHHHHHHC--CTTSTTCSTTCCHHHHHH
T ss_pred CcceecCcEEEEEeccCCCccCcccccccccceeEEEHHHHHHHhCCCHHHHHHHHHhcC--CCCCCCCCCCccHHHHHH
Confidence 9999999988664321 247889999999999999999999999 99999 999999999999
Q ss_pred HHHHhCCHHHHHHHhhhcchhhhhhHHHhhhhchhhhhhhhccccCCCCCCcCCCccccccCCCCHHHHHHHH-HHccCC
Q psy2882 970 LLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLF-NKYNIP 1048 (1428)
Q Consensus 970 LL~~~gsle~i~~~~~~i~~k~~~~l~~~~~~~~~~~~L~~i~~d~~l~~~~~~~~~~~~~~~~d~~~l~~l~-~~~~f~ 1048 (1428)
||++|||+|+|+++.++++.+ ++++ +++++ +.+| .+++.|.+||.++|.+|| +++||+
T Consensus 253 li~~~gsle~il~~~~~~~~~---~~~~----~~~~~----~v~d----------~~~~~~~~pd~~~l~~~~~~~~~f~ 311 (340)
T 1b43_A 253 IVRHSKDPLAKFQKQSDVDLY---AIKE----FFLNP----PVTD----------NYNLVWRDPDEEGILKFLCDEHDFS 311 (340)
T ss_dssp HHHTCSSGGGGTGGGCSSCHH---HHHH----HHHSC----CCCC----------CCCCCCCCCCHHHHHHHHTTTTCCC
T ss_pred HHHHcCCHHHHHcCCCCccHH---HHHH----HHhCC----CCCC----------cccCCCCCCCHHHHHHHHHHhcCCC
Confidence 999999999999998887632 2222 34443 2222 257889999999999998 999999
No 17
>3r8s_H 50S ribosomal protein L9; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_F 1p86_F 1vs8_H 1vs6_H 2aw4_H 2awb_H 2gya_F 2gyc_F 1vt2_H 2i2v_H 2j28_H 2i2t_H* 2qao_H* 2qba_H* 2qbc_H* 2qbe_H 2qbg_H 2qbi_H* 2qbk_H* 2qov_H ...
Probab=100.00 E-value=3.1e-39 Score=331.87 Aligned_cols=138 Identities=39% Similarity=0.653 Sum_probs=134.4
Q ss_pred ccchhcccccCccCCCCEEEecccccccccccCCcEeccCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccc-eEEE
Q psy2882 174 MQVILLKDIPNLGKLGEIIKVKNGYARNFLIPKNKARHATKFVIKEFEEKRIKLEKTAFTIFLNAKKIGEEIKKL-NINI 252 (1428)
Q Consensus 174 ~~vil~~dV~~lG~~GdvV~Vk~GyaRN~Lip~~lA~~at~~n~~~~~~~~~~~~~~~~~~~~~a~~~~~~L~~~-~l~i 252 (1428)
|+|||++||+|||++||+|+|++|||||||||+|+|++||++|++.++.++++.++++++.+++|++++++|+++ +|+|
T Consensus 1 MkVIL~~dV~~LG~~GdvV~Vk~GYaRNfLiP~glA~~AT~~n~k~~e~~~~~~~~~~~~~~~~A~~~~~~L~~~~~v~i 80 (149)
T 3r8s_H 1 MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEARRAELEAKLAEVLAAANARAEKINALETVTI 80 (149)
T ss_dssp CCCEESSCCTTTCCSSCBCCCCHHHHTTTTSSSSSEECCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEecccccCCCCCCEEEEcCcceehhhccCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999997 9999
Q ss_pred EEecCCCCceeecccHHHHHHHHHHCCceecCcceecCCcccccccceeeeeeeccCCc
Q psy2882 253 IKKSGVDGKLFGSVTNSDIVKELEKKGLKIEKNKIKLPNNSIKKIGNYYIDILLHNGNS 311 (1428)
Q Consensus 253 ~~~~~~~gklfgsVt~~~I~~~l~~~gi~v~~~~I~l~~~pIk~~G~~~V~v~l~~~~~ 311 (1428)
.+++|++|+||||||++||+++|+++|++|||++|.||++|||++|+|+|+|+||+++.
T Consensus 81 ~~k~g~~gklfGSVt~~dIa~al~~~g~~idk~~I~l~~~pIk~~G~~~v~v~Lh~~V~ 139 (149)
T 3r8s_H 81 ASKAGDEGKLFGSIGTRDIADAVTAAGVEVAKSEVRLPNGVLRTTGEHEVSFQVHSEVF 139 (149)
T ss_dssp EECBCTTSEEEEEECHHHHHHHHHTTSCCCCTTSEECSSCCEEESEEEEEEECSSSSCC
T ss_pred EEEcCCCCceEcccCHHHHHHHHHHcCCceehheEEcCCccccceEEEEEEEEECCCCE
Confidence 99999999999999999999999989999999999999779999999999999999764
No 18
>1div_A Ribosomal protein L9; rRNA-binding; 2.60A {Geobacillus stearothermophilus} SCOP: d.99.1.1 d.100.1.1 PDB: 1giy_K 1yl3_K 2b66_I 2b9n_I 2b9p_I 487d_K
Probab=100.00 E-value=1.1e-38 Score=327.87 Aligned_cols=137 Identities=39% Similarity=0.627 Sum_probs=133.6
Q ss_pred ccchhcccccCccCCCCEEEecccccccccccCCcEeccCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccceEEEE
Q psy2882 174 MQVILLKDIPNLGKLGEIIKVKNGYARNFLIPKNKARHATKFVIKEFEEKRIKLEKTAFTIFLNAKKIGEEIKKLNINII 253 (1428)
Q Consensus 174 ~~vil~~dV~~lG~~GdvV~Vk~GyaRN~Lip~~lA~~at~~n~~~~~~~~~~~~~~~~~~~~~a~~~~~~L~~~~l~i~ 253 (1428)
|+|||++||+|||++||+|+|++|||||||||+|+|++||++|++.++.++++.++++++.+++|++++++|++++++|.
T Consensus 1 MkVILl~dV~~LG~~GdvV~Vk~GYaRNfLiP~glA~~AT~~n~~~~e~~~~~~~~~~~~~~~~A~~~a~~L~~~~v~i~ 80 (149)
T 1div_A 1 MKVIFLKDVKGKGKKGEIKNVADGYANNFLFKQGLAIEATPANLKALEAQKQKEQRQAAEELANAKKLKEQLEKLTVTIP 80 (149)
T ss_dssp CEEEECSBSSSBGGGTEEEECCTTHHHHTTTTTTSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEcccccccCCCCCEEEEcCCceeeeeccCCceecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCceeecccHHHHHHHHHHC-CceecCcceecCCcccccccceeeeeeeccCCc
Q psy2882 254 KKSGVDGKLFGSVTNSDIVKELEKK-GLKIEKNKIKLPNNSIKKIGNYYIDILLHNGNS 311 (1428)
Q Consensus 254 ~~~~~~gklfgsVt~~~I~~~l~~~-gi~v~~~~I~l~~~pIk~~G~~~V~v~l~~~~~ 311 (1428)
+++|++|+||||||++||+++|+++ |++|||++|.||+ |||++|+|+|+|+||+++.
T Consensus 81 ~k~g~~gklfGSVt~~dIa~al~~~~g~~idk~~I~l~~-~Ik~~G~~~v~vkLh~~V~ 138 (149)
T 1div_A 81 AKAGEGGRLFGSITSKQIAESLQAQHGLKLDKRKIELAD-AIRALGYTNVPVKLHPEVT 138 (149)
T ss_dssp ECBCGGGEEEEEECHHHHHHHHHHHHCCCCCGGGBCCCS-CEEESEEEEEEEEEETTEE
T ss_pred EEeCCCCcEEeecCHHHHHHHHHHhhCCeechheEECCC-CccccEEEEEEEEECCCCE
Confidence 9999999999999999999999998 9999999999995 9999999999999999653
No 19
>1nkw_F 50S ribosomal protein L9; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_F* 1nwy_F* 1sm1_F* 1xbp_F* 1pnu_F 1pny_F 1vor_I 1vou_I 1vow_I 1voy_I 1vp0_I
Probab=100.00 E-value=8.2e-38 Score=320.30 Aligned_cols=135 Identities=34% Similarity=0.631 Sum_probs=131.7
Q ss_pred ccchhcccccCccCCCCEEEecccccccccccCCcEeccCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccceEEEE
Q psy2882 174 MQVILLKDIPNLGKLGEIIKVKNGYARNFLIPKNKARHATKFVIKEFEEKRIKLEKTAFTIFLNAKKIGEEIKKLNINII 253 (1428)
Q Consensus 174 ~~vil~~dV~~lG~~GdvV~Vk~GyaRN~Lip~~lA~~at~~n~~~~~~~~~~~~~~~~~~~~~a~~~~~~L~~~~l~i~ 253 (1428)
|+|||++| +|||++||+|+|++|||||||||+|+|++||++|++.++.++++.++++++.+++|++++++|++++++|.
T Consensus 1 MkVIL~~d-~~LG~~GdvV~Vk~GYaRNfLiP~glA~~AT~~n~~~~e~~~~~~~~~~~~~~~~A~~~a~~L~~~~v~i~ 79 (146)
T 1nkw_F 1 MQVILLEP-SRLGKTGEVVSVKDGYARNWLIPQGLAVSATRTNMKTLEAQLRSIEKRQAQEKAVAEDLASRLNGVAVELS 79 (146)
T ss_pred CeEEEeec-CCCCCCCCEEEEcCcceehhcccCCceecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 89999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCceeecccHHHHHHHHHHCCceecCcceecCCcccccccceeeeeeeccCCc
Q psy2882 254 KKSGVDGKLFGSVTNSDIVKELEKKGLKIEKNKIKLPNNSIKKIGNYYIDILLHNGNS 311 (1428)
Q Consensus 254 ~~~~~~gklfgsVt~~~I~~~l~~~gi~v~~~~I~l~~~pIk~~G~~~V~v~l~~~~~ 311 (1428)
+++| +|+||||||++||+++|+++|++|||++|.||+ |||++|+|+|+|+||+++.
T Consensus 80 ~k~g-~gklfGSVt~~dIa~al~~~g~~idk~~I~l~~-~Ik~~G~~~v~vkLh~~V~ 135 (146)
T 1nkw_F 80 VRAG-EGKIYGAVTHQDVANSLDQLGFDVDRRKIDMPK-TVKEVGEYDIAYRAHPEVT 135 (146)
T ss_pred EEcC-CCceeeccCHHHHHHHHHHcCCeechheEECCC-cccccEEEEEEEEECCCCE
Confidence 9999 999999999999999999899999999999995 9999999999999999753
No 20
>3v2d_I 50S ribosomal protein L9; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_I 2jl6_I 2jl8_I 2v47_I 2v49_I 2wdi_I 2wdj_I 2wdl_I 2wdn_I 2wh2_I 2x9s_I 2x9u_I 2xg0_I 2xg2_I 3hux_I 3huz_I 3i8f_K 3i8i_K 3i9c_K 3i9e_K ...
Probab=100.00 E-value=3.7e-38 Score=323.54 Aligned_cols=136 Identities=33% Similarity=0.570 Sum_probs=132.7
Q ss_pred ccchhcccccCccCCCCEEEecccccccccccCCcEeccCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccceEEEE
Q psy2882 174 MQVILLKDIPNLGKLGEIIKVKNGYARNFLIPKNKARHATKFVIKEFEEKRIKLEKTAFTIFLNAKKIGEEIKKLNINII 253 (1428)
Q Consensus 174 ~~vil~~dV~~lG~~GdvV~Vk~GyaRN~Lip~~lA~~at~~n~~~~~~~~~~~~~~~~~~~~~a~~~~~~L~~~~l~i~ 253 (1428)
|+|||++||+|||++||+|+|++|||||||||+|+|++||++|++.++.++++.++++++.+++|++++++|++++|+|.
T Consensus 1 MkVILl~dV~~LG~~GdvV~Vk~GYaRNfLiP~g~A~~AT~~n~k~~e~~~~~~~~~~~~~~~~A~~~~~~L~~~~v~i~ 80 (148)
T 3v2d_I 1 MKVILLEPLENLGDVGQVVDVKPGYARNYLLPRGLAVLATESNLKALEARIRAQAKRLAERKAEAERLKEILENLTLTIP 80 (148)
T ss_dssp CEEEESSCBTTTBSTTCEEECCHHHHHHTTGGGTSEEECCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHSSSCCEEEE
T ss_pred CeEEEccccccCCCCccEEEEcCCceehhhcccCchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCceeecccHHHHHHHHHHC-CceecCcceecCCcccccccceeeeeeeccCCc
Q psy2882 254 KKSGVDGKLFGSVTNSDIVKELEKK-GLKIEKNKIKLPNNSIKKIGNYYIDILLHNGNS 311 (1428)
Q Consensus 254 ~~~~~~gklfgsVt~~~I~~~l~~~-gi~v~~~~I~l~~~pIk~~G~~~V~v~l~~~~~ 311 (1428)
+++|++ +||||||++||+++|+++ |++|||++|.||+ |||++|+|+|+|+||+++.
T Consensus 81 ~kag~~-kLfGSVt~~dIa~al~~~~g~~idk~~I~l~~-pIk~~G~~~v~v~Lh~~V~ 137 (148)
T 3v2d_I 81 VRAGET-KIYGSVTAKDIAEALSRQHGVTIDPKRLALEK-PIKELGEYVLTYKPHPEVP 137 (148)
T ss_dssp CCBSSS-SBSSCBCHHHHHHHHTTTTCCCCCTTSSCCSS-CBCSCEEEEEECCSBTTBC
T ss_pred EEcCCC-ccccccCHHHHHHHHHHhcCCCcchheEEcCc-hhhceEEEEEEEEECCCcE
Confidence 999999 999999999999999998 9999999999995 9999999999999999764
No 21
>3bbo_J Ribosomal protein L9; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=2.2e-37 Score=329.85 Aligned_cols=149 Identities=29% Similarity=0.510 Sum_probs=132.0
Q ss_pred CcCHHHhhhHhhhcccccchhcccccCccCCCCEEEecccccccccccCCcEeccCHHHHHHHHHHHHHHHHHHhhhHHH
Q psy2882 158 GTCSHYQRQITFIRKNMQVILLKDIPNLGKLGEIIKVKNGYARNFLIPKNKARHATKFVIKEFEEKRIKLEKTAFTIFLN 237 (1428)
Q Consensus 158 g~~~~~qr~~~~aik~~~vil~~dV~~lG~~GdvV~Vk~GyaRN~Lip~~lA~~at~~n~~~~~~~~~~~~~~~~~~~~~ 237 (1428)
.+...-|+.. .|+|+|||++||+|||++||||+|++|||||||||+|+|++||++|++.++.++++.++++++.+++
T Consensus 37 ~lvv~~~k~~---~k~MkVILledV~~LGk~GdvV~Vk~GYARNfLiP~glAv~AT~~nlk~~e~~~~~~e~~~~~~~~~ 113 (197)
T 3bbo_J 37 NFEVVSQKKA---KKLRKVILKEDVTDLGKQGQLLDVKAGFFRNFLLPTGKAQLMTPLLLKELKMEDERIEAEKQRVKEE 113 (197)
T ss_dssp ----------------CCCCCCSCSSSSCSSCCCSCCCSSSCCCCCTTTTCCCCCCHHHHHHHHTTTHHHHGGGTTTTHH
T ss_pred EEEEEecccc---CCceEEEEcccccccCCCCCEEEEcCcceeehcccCCceecCCHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3445555544 3689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccc-eEEEEEecCCCCceeecccHHHHHHHHHHC-CceecCcceecCCcccccccceeeeeeeccCCc
Q psy2882 238 AKKIGEEIKKL-NINIIKKSGVDGKLFGSVTNSDIVKELEKK-GLKIEKNKIKLPNNSIKKIGNYYIDILLHNGNS 311 (1428)
Q Consensus 238 a~~~~~~L~~~-~l~i~~~~~~~gklfgsVt~~~I~~~l~~~-gi~v~~~~I~l~~~pIk~~G~~~V~v~l~~~~~ 311 (1428)
|++++++|+++ .|+|.+++|++|+||||||++||+++|+++ |++|||++|.||+ ||++|+|+|+|+||+++.
T Consensus 114 A~~la~~L~~~~~v~i~~kaGe~GkLFGSVT~~dIa~al~~~~Gi~Idk~~I~L~~--IK~lG~y~V~VkLh~eV~ 187 (197)
T 3bbo_J 114 AQQLAMVFQTVGAFKVKRKGGKGKLIFGSVTAQDLVDIIKSQLQKDIDKRLVSLPE--IRETGEYIAELKLHPDVT 187 (197)
T ss_dssp HHTHHHHSSSCCCCBCCCCBCTTSSBSSCCSSHHHHGGGTSSSSCCCCSTTCCSCC--CSSSSCEEECCCCBTTBC
T ss_pred HHHHHHHhcCCceEEEEEEeCCCCcEecccCHHHHHHHHHHhhCCeeeeeEEEecc--ccceEEEEEEEEECCCcE
Confidence 99999999999 599999999999999999999999999988 9999999999983 999999999999999753
No 22
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=100.00 E-value=1.2e-33 Score=286.07 Aligned_cols=123 Identities=28% Similarity=0.431 Sum_probs=119.7
Q ss_pred eeEeeccCCCCceEEEEcCCeEEEeCCeEEeccEEEeCCCcccccCCCCCCCCCHhHHHhhhccCCcEEEEeeCCCCCCC
Q psy2882 1305 MELKKIINTKHQTIVAYTNYGVKFRNGIFYTKSFLVSPEIDPIFWSINKYNFLTKKDFIHISKFNPSVVILGTGNIQHFI 1384 (1428)
Q Consensus 1305 M~~~~~~~~~~~~I~~y~~g~f~i~ng~~~~gsviv~p~~~~~~W~~~~~~~l~~e~l~~ll~~~pevliiGTG~~~~~~ 1384 (1428)
|+|++...++.+.|++|++|+|+| ||++|.|||+|+|++++..|+++++++|++++|+.+++++||+||||||.++.++
T Consensus 1 M~~~~~~~~~~~~I~~y~~g~f~i-~g~~~~g~ilv~p~~~v~~W~~~~~~~l~~e~l~~ll~~~pevliiGTG~~~~~l 79 (132)
T 2gm2_A 1 MPLNQEHPDYTYALRAADGRHAKV-NEQILQQSFILMPDELVEHWPVPSLGQLQPAHMDAVLALNPAVILLGTGERQQFP 79 (132)
T ss_dssp CCSCCSSCCCCCCEEEECSSCEEE-TTEEECSEEEECSSCEECCCCCSSGGGCCTTTSHHHHHHCCSEEEEECTTSCCCC
T ss_pred CcccccCCCCCceEEEEcCCEEEE-CCEEEEeCEEEeCCCceeecCCCCcccCCHHHHHHHHhcCCCEEEECCCCCCCcC
Confidence 899999999999999999999997 9999999999999996699999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCeEEEcChhhHHHHHHhhhhccceeeeecccC
Q psy2882 1385 HPKLTYILTQKNIGIECMNNQAACRTYNILVSDDIKAMLALILD 1428 (1428)
Q Consensus 1385 ~~~~~~~l~~~GI~vE~M~T~aAcrTyNiL~sEgR~VaaaLi~~ 1428 (1428)
+|+++++|+++||+||+|+|++||||||+|++|||+||||||++
T Consensus 80 ~p~~~~~l~~~GI~vE~m~T~aAcrTyNiL~~EgR~VaAaLi~~ 123 (132)
T 2gm2_A 80 STDVLAACLTRGIGLEAMTNAAAARTYNVLASEGRRVALAMIVG 123 (132)
T ss_dssp CHHHHHHHHHHTCEEEEECHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred CHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHhCCCcEEEEEccC
Confidence 99999999999999999999999999999999999999999974
No 23
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A
Probab=100.00 E-value=8e-33 Score=281.75 Aligned_cols=123 Identities=28% Similarity=0.472 Sum_probs=113.5
Q ss_pred eeEeeccCCCCceEEEEcCCeEEEeCCeEEeccEEEeCCCcccccCCCCCCCCCHhHHHhhhcc----------------
Q psy2882 1305 MELKKIINTKHQTIVAYTNYGVKFRNGIFYTKSFLVSPEIDPIFWSINKYNFLTKKDFIHISKF---------------- 1368 (1428)
Q Consensus 1305 M~~~~~~~~~~~~I~~y~~g~f~i~ng~~~~gsviv~p~~~~~~W~~~~~~~l~~e~l~~ll~~---------------- 1368 (1428)
|+|+++..++.+.|++|++|+|+| ||++|.|||+++|++.+..|+++++++|++++|+.++..
T Consensus 1 Mkl~~~~~~~~~~I~~Y~~g~~~i-ng~~~~gsv~v~p~g~v~~W~~~~~~~i~~~~l~~l~~l~~~~~~~~~~~~~~~~ 79 (150)
T 3cpk_A 1 MKLHTDPATALNTVTAYGDGYIEV-NQVRFSHAIAFAPEGPVASWPVQRPADITASLLQQAAGLAEVVRDPLAFLDEPEA 79 (150)
T ss_dssp ------CCCCCCCEEEEETTEEEE-TTEEECSCEEECSSSCCEECCCSSGGGCCHHHHHHHHTCC---------------
T ss_pred CcccccCCCCCceEEEEcCCEEEE-CCEEEEcCEEEecCCceeecCCCChhhCCHHHHHHHHhcccccccchhhcccccc
Confidence 899999999999999999999997 999999999999999779999999999999999998765
Q ss_pred --------CCcEEEEeeCCCCCCCCHHHHHHHHHcCCeEEEcChhhHHHHHHhhhhccceeeeecccC
Q psy2882 1369 --------NPSVVILGTGNIQHFIHPKLTYILTQKNIGIECMNNQAACRTYNILVSDDIKAMLALILD 1428 (1428)
Q Consensus 1369 --------~pevliiGTG~~~~~~~~~~~~~l~~~GI~vE~M~T~aAcrTyNiL~sEgR~VaaaLi~~ 1428 (1428)
+||+||||||.+++++++++++.|.++||+||+|+|++||||||+|++|||+||||||++
T Consensus 80 ~~~~~p~~~pEvliiGTG~~~~~l~p~~~~~L~~~GIgvE~M~T~aA~rTyNiL~~EgRrVaaaLi~~ 147 (150)
T 3cpk_A 80 GAGARPANAPEVLLVGTGRRQHLLGPEQVRPLLAMGVGVEAMDTQAAARTYNILMAEGRRVVVALLPD 147 (150)
T ss_dssp --------CCSEEEEECTTSCCCCCHHHHHHHHTTTCEEEEECHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred ccccccCCCCCEEEEcCCCCCCCCCHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 899999999999999999999999999999999999999999999999999999999985
No 24
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=99.97 E-value=2.1e-32 Score=276.33 Aligned_cols=121 Identities=22% Similarity=0.285 Sum_probs=110.2
Q ss_pred ceeEeeccCCCCceEEEEcCCeEEEeCCeEEeccEEEeCCCcccccCCCCCCCCCHhHHHhhhc--cCCcEEEEeeCCCC
Q psy2882 1304 KMELKKIINTKHQTIVAYTNYGVKFRNGIFYTKSFLVSPEIDPIFWSINKYNFLTKKDFIHISK--FNPSVVILGTGNIQ 1381 (1428)
Q Consensus 1304 ~M~~~~~~~~~~~~I~~y~~g~f~i~ng~~~~gsviv~p~~~~~~W~~~~~~~l~~e~l~~ll~--~~pevliiGTG~~~ 1381 (1428)
.|+|++...++.+.|++|++|+|+| ||++|.|||+|+|++ +..|++++ ++|+++||+.++. ++||+||||||.++
T Consensus 4 ~M~l~~~~~~~~~~I~~y~~g~f~i-~g~~~~g~i~v~p~~-~~~W~~~~-~~l~~~~l~~l~~~~p~pevliiGtG~~~ 80 (128)
T 2fi9_A 4 AIQIREAHFPGRAPIDAYGNGGFRF-ADMSHRGSIICIPSG-IYGIDMTG-PVPTQEDISRVLEESDQIEVLLIGTGVEL 80 (128)
T ss_dssp -------CBSSCCCEEEEETTEEEE-TTEEEESEEEEETTE-EEEECCSS-SSCCTGGGHHHHHTGGGCSEEEEECTTSC
T ss_pred CcccCCCCCCCCceEEEEcCCEEEE-CCEEEEeCEEEeCCC-eeccCCCc-CCCCHHHHHHHHhcCCCCCEEEECCCCCC
Confidence 4999999999999999999999997 999999999999999 59999999 9999999999865 55999999999999
Q ss_pred CCCCHHHHHHHHHcCCeEEEcChhhHHHHHHhhhhccceeeeeccc
Q psy2882 1382 HFIHPKLTYILTQKNIGIECMNNQAACRTYNILVSDDIKAMLALIL 1427 (1428)
Q Consensus 1382 ~~~~~~~~~~l~~~GI~vE~M~T~aAcrTyNiL~sEgR~VaaaLi~ 1427 (1428)
.+++|+++++|+++||+||+|+|++||||||+|++|||+||||||+
T Consensus 81 ~~l~p~~~~~l~~~GI~vE~m~T~aAcrtyNiL~~EgR~VaaaLi~ 126 (128)
T 2fi9_A 81 LRLPEELRVLLWEKRISSDTMSTGAAVRTFNVLLAEDRAVAALLFA 126 (128)
T ss_dssp CCCCHHHHHHHHHTTCEEEEECHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCCHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 9999999999999999999999999999999999999999999997
No 25
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=99.97 E-value=2.3e-31 Score=269.96 Aligned_cols=116 Identities=24% Similarity=0.322 Sum_probs=110.1
Q ss_pred cCCCCceEEEEcCCeEEEeCCeEEeccEEEeCCCcccccCCCCCCCCCHhHHHhhhc--cCCcEEEEeeCCCCCCCCHHH
Q psy2882 1311 INTKHQTIVAYTNYGVKFRNGIFYTKSFLVSPEIDPIFWSINKYNFLTKKDFIHISK--FNPSVVILGTGNIQHFIHPKL 1388 (1428)
Q Consensus 1311 ~~~~~~~I~~y~~g~f~i~ng~~~~gsviv~p~~~~~~W~~~~~~~l~~e~l~~ll~--~~pevliiGTG~~~~~~~~~~ 1388 (1428)
..++.+.|++|++|+|+| ||++|.|||+|+|++ +..|+++++++|++++|+.++. ++||+||||||.++.+++|++
T Consensus 9 ~~~~~~~I~~y~~g~f~i-ng~~~~gsilv~p~~-~~~W~~~~~~~l~~e~l~~l~~~~p~pevliiGTG~~~~~l~p~l 86 (135)
T 2fvt_A 9 HFPRTAAIDAYGKGGFYF-AGMSHQGSLLFLPDA-VWGWDVTKPEQIDRYSLQRVFDNANAIDTLIVGTGADVWIAPRQL 86 (135)
T ss_dssp CCCSCCCCCCEETTEEEC-SSSEECSEEEECSSC-EEEESCCSTTCCCTTTTHHHHHTTTSCSEEEEECTTSCCCCCHHH
T ss_pred cCCCCceEEEEcCCEEEE-CCEEEEeCEEEeCCC-ccccCCCCcccCCHHHHHHHHhcCCCCCEEEEcCCCCCCcCCHHH
Confidence 456788999999999997 999999999999999 6999999999999999999865 559999999999999999999
Q ss_pred HHHHHHcCCeEEEcChhhHHHHHHhhhhccceeeeecccC
Q psy2882 1389 TYILTQKNIGIECMNNQAACRTYNILVSDDIKAMLALILD 1428 (1428)
Q Consensus 1389 ~~~l~~~GI~vE~M~T~aAcrTyNiL~sEgR~VaaaLi~~ 1428 (1428)
+++|+++||+||+|+|++||||||+|++|||+||||||++
T Consensus 87 ~~~l~~~GI~vE~M~T~aAcrTyNiL~~EgR~VaAaLi~~ 126 (135)
T 2fvt_A 87 REALRGVNVVLDTMQTGPAIRTYNIMIGERRRVAAALIAV 126 (135)
T ss_dssp HHHHHTTTCEEEEECHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred HHHHHHcCCEEEEeCHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 9999999999999999999999999999999999999974
No 26
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=99.96 E-value=1.3e-30 Score=305.76 Aligned_cols=201 Identities=16% Similarity=0.170 Sum_probs=162.8
Q ss_pred hhhccchhhhhhhccCCcCcCCCCccchHHHHHHHHHHHHHHhcCCCEEEEEEeCCCC-CcccCC--------------C
Q psy2882 777 GKIDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK-NFRNIL--------------Y 841 (1428)
Q Consensus 777 ~~i~g~~~~~Ra~~a~~~l~~~~G~~t~av~gf~~~l~~l~~~~~p~~~v~~fD~~~~-~fR~~l--------------~ 841 (1428)
+.+|||+++||++|+.. ..+..|.+|+++.||+.+..+++..++ -+.++||||..+ ..|.+. +
T Consensus 27 vaIDas~wL~~~~~~~~-~~l~~G~~t~~l~~~~~r~l~~L~~~g-I~PvfVFDG~~~p~Kk~~~~~Rr~~r~~~~~~~~ 104 (352)
T 3qe9_Y 27 VAVDTYCWLHKGAIACA-EKLAKGEPTDRYVGFCMKFVNMLLSHG-IKPILVFDGCTLPSKKEVERSRRERRQANLLKGK 104 (352)
T ss_dssp EEEETHHHHHHHHHHTH-HHHHTTCCCCHHHHHHHHHHHHHHHTT-CEEEEEECCSCCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecHHHHHHhhhccc-hhhcCCCCcHHHHHHHHHHHHHHHHcC-CEEEEEECCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999864 233689999999999999999888766 567999999763 444332 4
Q ss_pred hhhhcCCCCCChH--------HHHHHHHHHHHHHHcCCcEEEecchhhHHHHHHHHHHHhhhCCCEEEEEeCCCCccccc
Q psy2882 842 PSYKATRKKMPYN--------LILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLV 913 (1428)
Q Consensus 842 p~YKa~R~~~p~~--------l~~q~~~i~~~l~~~gi~~i~~~g~EADD~iatla~~~~~~~~~~v~IvS~DkDl~QLv 913 (1428)
..|+++|.+...+ -..+.+.++++|++||||++.+| |||||+||||+++ |..+.|+|+|+|++|++
T Consensus 105 ~~~~~g~~~~a~~~f~~~~~vt~~~~~~i~~~L~~~gIp~i~ap-~EADaqiA~La~~-----g~~~~I~S~D~Dll~~~ 178 (352)
T 3qe9_Y 105 QLLREGKVSEARECFTRSINITHAMAHKVIKAARSQGVDCLVAP-YEADAQLAYLNKA-----GIVQAIITEDSALLAFG 178 (352)
T ss_dssp HHTTSSCCHHHHHHHGGGCCCCHHHHHHHHHHHHHTTCEEEECS-SCHHHHHHHHHHT-----TSCSEEECSCGGGGGGT
T ss_pred HHHHhCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCcEEECC-cchHHHHHHHHHC-----CCeEEEEeCCcCccccc
Confidence 5566666321100 12578899999999999999988 8999999999983 67789999999999999
Q ss_pred cCcEEE-EeCC---eeccHHHH--HHHhC--CChhhHHhhhhccccccCCCCCCCccchhhHHHHHHHh--CCHHHHHHH
Q psy2882 914 SNKIAL-INNN---KIHDRTTI--ISRFG--VSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQY--NSLENIINN 983 (1428)
Q Consensus 914 ~~~v~~-~~~~---~~~~~~~v--~~~~G--v~p~q~~d~~aL~GD~sDnipGvpGIG~KtA~kLL~~~--gsle~i~~~ 983 (1428)
+++|.. ++.. ..++.+.+ .+++| ++|+||+|+++|+| |||+|||||||||||.+||++| ||+|++|++
T Consensus 179 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~q~id~~~L~G--~D~~pgv~GiG~ktA~kli~~~~~~~l~~il~~ 256 (352)
T 3qe9_Y 179 CKKVILKMDQFGNGLEIDQARLGMCRQLGDVFTEEKFRYMCILSG--CDYLSSLRGIGLAKACKVLRLANNPDIVKVIKK 256 (352)
T ss_dssp CSEEEESCCTTSEEEEEEGGGGTTCCTTCSSCCHHHHHHHHHHHC--CSSSCCCTTCCHHHHHHHHHHCCCSCHHHHHTT
T ss_pred CCeEEEeccCCCCcEEEeHHHHHHHHHhCCCCCHHHHHHHHHhcC--CCCCCCCCCeeHHHHHHHHHHhCCCCHHHHHHH
Confidence 998743 3321 23565554 57899 99999999999999 9999999999999999999999 799999999
Q ss_pred hhhc
Q psy2882 984 ANNI 987 (1428)
Q Consensus 984 ~~~i 987 (1428)
+++.
T Consensus 257 ~~~~ 260 (352)
T 3qe9_Y 257 IGHY 260 (352)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8753
No 27
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=99.96 E-value=9.7e-30 Score=254.21 Aligned_cols=111 Identities=15% Similarity=0.205 Sum_probs=107.1
Q ss_pred CceEEEEcCCeEEEeCCeEEec-cEEEeCCCcccccC-----CCCCCCCCHhHHHhhhccCCcEEEEeeCCCCCC-CCHH
Q psy2882 1315 HQTIVAYTNYGVKFRNGIFYTK-SFLVSPEIDPIFWS-----INKYNFLTKKDFIHISKFNPSVVILGTGNIQHF-IHPK 1387 (1428)
Q Consensus 1315 ~~~I~~y~~g~f~i~ng~~~~g-sviv~p~~~~~~W~-----~~~~~~l~~e~l~~ll~~~pevliiGTG~~~~~-~~~~ 1387 (1428)
...|++|++|+|+| ||++|.+ ||+|+|++ +..|+ +.++++++++||+.+++++||+||||||.+++| ++|+
T Consensus 3 ~~~I~~y~~g~~~i-ng~~~~~~siiv~p~~-~~~w~w~~~g~~~~~~l~~~~l~~ll~~~~evliiGtG~~~~~~~~~~ 80 (122)
T 2ab1_A 3 SPEIASLSWGQMKV-KGSNTTYKDCKVWPGG-SRTWDWRETGTEHSPGVQPADVKEVVEKGVQTLVIGRGMSEALKVPSS 80 (122)
T ss_dssp CCCEEEEETTEEEE-TTCSCEESEEEEETTE-EEEECHHHHTCCSSSCCCHHHHHHHHTTCCSEEEEEECSSCCSCCCHH
T ss_pred CCEEEEEcCCEEEE-CCEEEeCCCEEEECCc-cccCcccccCcCChhHCCHHHHHHHhhCCCCEEEECCCCCCccCCCHH
Confidence 46799999999997 9999999 99999999 68998 999999999999999999999999999999998 9999
Q ss_pred HHHHHHHcCCeEEEcChhhHHHHHHhhhhccceeeeeccc
Q psy2882 1388 LTYILTQKNIGIECMNNQAACRTYNILVSDDIKAMLALIL 1427 (1428)
Q Consensus 1388 ~~~~l~~~GI~vE~M~T~aAcrTyNiL~sEgR~VaaaLi~ 1427 (1428)
++++|+++||+||+|+|++||||||+|++|||+|||||++
T Consensus 81 ~~~~l~~~gI~ve~m~T~~A~rtyN~L~~EgR~VaAal~~ 120 (122)
T 2ab1_A 81 TVEYLKKHGIDVRVLQTEQAVKEYNALVAQGVRVGGVFHS 120 (122)
T ss_dssp HHHHHHHTTCEEEEECHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHcCCEEEEeCHHHHHHHHHHHHhCCCcEEEEEee
Confidence 9999999999999999999999999999999999999975
No 28
>2cyj_A Hypothetical protein PH1505; conserved hypothetical protein, structural genomics, NPPSFA; HET: OCS; 1.50A {Pyrococcus horikoshii} SCOP: c.103.1.1
Probab=99.94 E-value=3.1e-27 Score=234.62 Aligned_cols=106 Identities=15% Similarity=0.123 Sum_probs=98.0
Q ss_pred eEEEEcCCeEEEeCCeEEeccEEEeCCCcc--cccCCCC-----CCCCCHhHHHhhhccCCcEEEEeeCCCC-CCCCHHH
Q psy2882 1317 TIVAYTNYGVKFRNGIFYTKSFLVSPEIDP--IFWSINK-----YNFLTKKDFIHISKFNPSVVILGTGNIQ-HFIHPKL 1388 (1428)
Q Consensus 1317 ~I~~y~~g~f~i~ng~~~~gsviv~p~~~~--~~W~~~~-----~~~l~~e~l~~ll~~~pevliiGTG~~~-~~~~~~~ 1388 (1428)
.|++|++|+|+| ||++|++||+|+|++++ ..|+... +++|+++||+.+++..||+||||||.++ .++++++
T Consensus 2 ~I~~yg~G~~~i-~g~~~~~sviv~p~g~v~~~~w~~~~~~~gt~~~l~~~~~~~ll~~~~evlliGTG~~~~~~~~~~~ 80 (118)
T 2cyj_A 2 KIEEVRFGLVKI-DGKEFDHDIVIYPSGRIERRMKEISKKKHGTSHKLDPEELEKYLVEDFDVLLVGTGIYGMLSLLPES 80 (118)
T ss_dssp CEEEEETTEEEE-TTEEESSCEEECTTSCEEECCTHHHHHHHSSTTEECHHHHHTTTTSCCSEEEEEECTTCCCEECHHH
T ss_pred ceeEecCCEEEE-CCEEEeeCEEEeCCCcccccccCccccccCCcccCCHHHHHHHHhcCCCEEEECCCCCccccCCHHH
Confidence 599999999997 99999999999999966 6666544 7889999999999999999999999996 7899999
Q ss_pred HHHHHHcCCeEEEcChhhHHHHHHhhhhccceeeeecc
Q psy2882 1389 TYILTQKNIGIECMNNQAACRTYNILVSDDIKAMLALI 1426 (1428)
Q Consensus 1389 ~~~l~~~GI~vE~M~T~aAcrTyNiL~sEgR~VaaaLi 1426 (1428)
++.|+++ +||+|+|++||||||+|+ |||+|+|||=
T Consensus 81 ~~~l~~~--~ve~M~T~aAcrTYNiL~-EgRrV~aalh 115 (118)
T 2cyj_A 81 KKLVEDK--EVIEKPTKEALKLLEELW-GKKRILAIIH 115 (118)
T ss_dssp HHHTTTS--EEEEECHHHHHHHHHHHB-TTBCEEEEEE
T ss_pred HHHHHHC--CcEEeCHHHHHHHHHHHh-cCCeEEEEEe
Confidence 9999999 999999999999999999 9999999983
No 29
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=99.93 E-value=4.2e-26 Score=262.39 Aligned_cols=180 Identities=17% Similarity=0.137 Sum_probs=142.2
Q ss_pred CceEEEEeeccccCccCCCcceeEEEEEEeCCc------------------eeeccceEEEEecCCCCCCChhhHhhcCC
Q psy2882 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIML------------------NTIDNPIMLYCKPAPDFLPDPRACLITKI 371 (1428)
Q Consensus 310 ~~~~v~~D~ETTGldp~~DrIiqiaaIr~~~~~------------------~~i~~~~~~~~~p~~~~~p~pea~~itGI 371 (1428)
.++|||||+||||+++.+|+|||||+|+++.+. .++++ ++++++|...+ +|++..||||
T Consensus 11 ~~tfVv~DlETTGL~~~~d~IIEIgaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~-~~~lI~P~~~I--~~~a~~IhGI 87 (314)
T 3u3y_B 11 MQTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDK-LSLCIAPGKAC--SPGASEITGL 87 (314)
T ss_dssp CSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHHC--CCCSSSCCCCCCCSSCEE-EEEECBCSSCC--CHHHHHHHSC
T ss_pred cCCEEEEEEECCCCCCCCCeEEEEEEEEEECCccccccccccccccccccceeeee-EEEEECCCCCC--CHHHHHhcCC
Confidence 368999999999999999999999999998653 24455 88999997643 5799999999
Q ss_pred CHHHHhcCCCCh--HHHHHHHHHHHcC--CCceEEEEcchhhhHHHHHHHHHHccccchhhhhhcCCCCCchhhHHH-HH
Q psy2882 372 TPQFCLNNGIPE--YKFASIIEKIFLK--PGTISVGYNTILFDDEITRFMFWRNLINPYEREWKNNCSRWDLINVIK-AF 446 (1428)
Q Consensus 372 Tpe~~~~~g~~e--~e~~~~i~~~~~~--~~~~~VGyN~i~FD~~flr~~f~Rn~~~~y~~~~~~g~sr~D~ld~~r-l~ 446 (1428)
|++++...|.|. .+++.++.+++.+ ...++||||+++||..||+++|.|++++... ..+..+|++.+++ ++
T Consensus 88 T~e~l~~aG~P~f~~ev~~~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~----~~~~~iDTL~l~r~L~ 163 (314)
T 3u3y_B 88 SKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPL----DGTFCVDSIAALKALE 163 (314)
T ss_dssp CHHHHHHTTCCBSCHHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTT----TTCEEEEHHHHHHHHH
T ss_pred CHHHHHhCCCCCcHHHHHHHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCC----CCceEEeHHHHHHHHH
Confidence 999998887654 5999999999986 2379999998899999999999998765311 1122446666665 43
Q ss_pred HHhCCCCcCCCCCCCCCCCCChHhHHHH-cCCCCCCCCChHHHHHHHHHHHHHHHhh
Q psy2882 447 YVLSPYGITWPYKNNGKPSFKLEHLSFV-NNLSHKKAHDALSDVRATLGLARLIRNN 502 (1428)
Q Consensus 447 ~~l~p~~~~~p~~~~g~~s~kLe~L~~~-~gi~~~~AHdAlaDv~AT~~l~~~l~~~ 502 (1428)
+.+ ||....+.++|+|++|+++ ||++..++|+|++||+||++|+..+.++
T Consensus 164 r~~------~P~~~~~~~~~~L~~L~~~l~gi~~~~aHrAl~DA~ata~lf~~l~~~ 214 (314)
T 3u3y_B 164 QAS------SPSGNGSRKSYSLGSIYTRLYWQAPTDSHTAEGHVLTLLSICQWKPQA 214 (314)
T ss_dssp TTC-------------CCCCSHHHHHHHHHSSCCSCSSSHHHHHHHHHHHHHSSHHH
T ss_pred HHh------CccccccCCCCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 333 4533334689999999999 9999999999999999999999988765
No 30
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=99.92 E-value=2.2e-25 Score=250.02 Aligned_cols=180 Identities=17% Similarity=0.120 Sum_probs=139.6
Q ss_pred CceEEEEeeccccCccCCCcceeEEEEEEeCCc------------------eeeccceEEEEecCCCCCCChhhHhhcCC
Q psy2882 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIML------------------NTIDNPIMLYCKPAPDFLPDPRACLITKI 371 (1428)
Q Consensus 310 ~~~~v~~D~ETTGldp~~DrIiqiaaIr~~~~~------------------~~i~~~~~~~~~p~~~~~p~pea~~itGI 371 (1428)
..+|||+|+||||++|.+|+|||||+|+++.+. .++++ ++.+++|... .+|++..||||
T Consensus 11 ~~~~vv~D~ETTGl~~~~d~IiEIgav~v~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~li~P~~~--i~~~~~~i~GI 87 (242)
T 3mxm_B 11 MQTLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDK-LSLCIAPGKA--CSPGASEITGL 87 (242)
T ss_dssp CSEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSCCEE-EEEECCCSSC--CCHHHHHHHCC
T ss_pred cceEEEEEeecCCCCCCCCeeEEEEEEEecCCcccccccccccccccccccchhhe-eEEEECCCCC--CCHHHHHhcCC
Confidence 468999999999999999999999999998653 45556 8899998754 35799999999
Q ss_pred CHHHHhcCCC-ChH-HHHHHHHHHHcC--CCceEEEEcchhhhHHHHHHHHHHccccchhhhhhcCCCCCchhhHHHH-H
Q psy2882 372 TPQFCLNNGI-PEY-KFASIIEKIFLK--PGTISVGYNTILFDDEITRFMFWRNLINPYEREWKNNCSRWDLINVIKA-F 446 (1428)
Q Consensus 372 Tpe~~~~~g~-~e~-e~~~~i~~~~~~--~~~~~VGyN~i~FD~~flr~~f~Rn~~~~y~~~~~~g~sr~D~ld~~rl-~ 446 (1428)
|++++...|. +.. +++.++.+++.+ +..++||||+++||..||+++|.|++++..... ...+|++.+.+. .
T Consensus 88 t~~~l~~~g~p~~~~ev~~~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~----~~~iDtl~l~r~l~ 163 (242)
T 3mxm_B 88 SKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDG----TFCVDSIAALKALE 163 (242)
T ss_dssp CHHHHHHTTCCCSCHHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTT----CEEEEHHHHHHHHH
T ss_pred CHHHHHhcCCCchhHHHHHHHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccC----CeEeehHHHHHHHH
Confidence 9999988775 444 899999999986 226899999679999999999999876532111 123455555553 2
Q ss_pred HHhCCCCcCCCCCCCCCCCCChHhHHHH-cCCCCCCCCChHHHHHHHHHHHHHHHhh
Q psy2882 447 YVLSPYGITWPYKNNGKPSFKLEHLSFV-NNLSHKKAHDALSDVRATLGLARLIRNN 502 (1428)
Q Consensus 447 ~~l~p~~~~~p~~~~g~~s~kLe~L~~~-~gi~~~~AHdAlaDv~AT~~l~~~l~~~ 502 (1428)
+.. ||....+.++|+|++|+++ ||++..++|+|++||+||++|+..+.+.
T Consensus 164 ~~~------~p~~~~~~~~~~L~~l~~~~~gi~~~~~H~Al~Da~ata~l~~~~~~~ 214 (242)
T 3mxm_B 164 QAS------SPSGNGSRKSYSLGSIYTRLYWQAPTDSHTAEGDDLTLLSICQWKPQA 214 (242)
T ss_dssp HHH------CC------CCCSHHHHHHHHHSSCCSSTTSHHHHHHHHHHHHTSSHHH
T ss_pred hhc------CccccCCCCCcCHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHHHHHH
Confidence 232 4432234678999999976 9999999999999999999999987764
No 31
>1ihn_A Hypothetical protein MTH938; methanobacterium thermoautotrophicum, unknown function; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.103.1.1
Probab=99.91 E-value=8.2e-26 Score=222.58 Aligned_cols=101 Identities=13% Similarity=0.134 Sum_probs=89.0
Q ss_pred ceEEEEcCCeEEEeCCeEEeccEEEeCCCcc--cccCCCC-----CCCCCHhHHHhhhccCCcEEEEeeCCCCC-CCCHH
Q psy2882 1316 QTIVAYTNYGVKFRNGIFYTKSFLVSPEIDP--IFWSINK-----YNFLTKKDFIHISKFNPSVVILGTGNIQH-FIHPK 1387 (1428)
Q Consensus 1316 ~~I~~y~~g~f~i~ng~~~~gsviv~p~~~~--~~W~~~~-----~~~l~~e~l~~ll~~~pevliiGTG~~~~-~~~~~ 1387 (1428)
+.|++|++|+|+| ||++|.+||+|+|++++ ..|+... +++|+++||+.+++..||+||||||.+++ .++++
T Consensus 2 ~~I~~yg~G~~~i-~g~~~~~sviv~p~g~v~~~~w~~~~~~~gt~~~l~~~~~~~ll~~~~evlliGTG~~~~~~~~~~ 80 (113)
T 1ihn_A 2 HMFSDCRFGSVTY-RGREYRSDIVVHVDGSVTPRRKEISRRKYGTSHVMAEEELEELLEEKPESIIIGSGVHGALETGFR 80 (113)
T ss_dssp CCEEEEETTEEEE-TTEEECSCEEECTTSCEEECCHHHHHHHHSSTTEECTHHHHHHHTTCCSEEEEECCTTCCCEESSC
T ss_pred CceeEEcCCEEEE-CCEEEeeCEEEeCCCcccccccCccccccCccccCCHHHHHHHHhcCCCEEEECCCCCccccCChh
Confidence 5699999999997 99999999999999966 5555443 68899999999999999999999999964 34455
Q ss_pred HHHHHHHcCCeEEEcChhhHHHHHHhhhhccceeeeecc
Q psy2882 1388 LTYILTQKNIGIECMNNQAACRTYNILVSDDIKAMLALI 1426 (1428)
Q Consensus 1388 ~~~~l~~~GI~vE~M~T~aAcrTyNiL~sEgR~VaaaLi 1426 (1428)
++ ||+|+|++||||||+|++|||+|+|||=
T Consensus 81 ~~---------ve~M~T~aAcrTYNiL~~EgRrV~aalh 110 (113)
T 1ihn_A 81 SD---------ATVLPTCEAIKRYNEERSAGRRVAAIIH 110 (113)
T ss_dssp CS---------CEEECHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred hE---------EEEcChHHHHHHHHHHHhCCCeEEEEEe
Confidence 54 9999999999999999999999999984
No 32
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=99.90 E-value=3e-23 Score=224.76 Aligned_cols=173 Identities=17% Similarity=0.146 Sum_probs=136.8
Q ss_pred ceEEEEeeccccCcc-----CCCcceeEEEEEEeCCceeeccceEEEEecCCCCCCChhhHhhcCCCHHHHhcCCCChHH
Q psy2882 311 STFLWYDYETFGLNV-----RRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKITPQFCLNNGIPEYK 385 (1428)
Q Consensus 311 ~~~v~~D~ETTGldp-----~~DrIiqiaaIr~~~~~~~i~~~~~~~~~p~~~~~p~pea~~itGITpe~~~~~g~~e~e 385 (1428)
++|+|+|+||||++| ..|+|||||+|+++. +.++++.|+.+++|... .++++..+||||++++ ..+.+..+
T Consensus 9 ~~~vviD~ETTGl~~~~~~~~~~~Iieig~v~~~~-~~~~~~~f~~lv~P~~~--i~~~~~~i~GIt~~~l-~~~~~~~~ 84 (194)
T 2gui_A 9 TRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVN-RRLTGNNFHVYLKPDRL--VDPEAFGVHGIADEFL-LDKPTFAE 84 (194)
T ss_dssp CEEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEET-TEECSCCEEEECCCSSC--CCHHHHHHHCCCHHHH-TTSCCHHH
T ss_pred CCEEEEEeeCCCCCCcccCCCCCEEEEEEEEEEEC-CeEeccEEEEEECcCCc--CCHHHHHhhCcCHHHH-hCCCCHHH
Confidence 689999999999999 569999999999984 56666558999999853 3579999999999999 45667789
Q ss_pred HHHHHHHHHcCCCceEEEEcchhhhHHHHHHHHHHcccc-c-hhhhhhcCCCCCchhhHHHHHHHhCCCCcCCCCCCCCC
Q psy2882 386 FASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLIN-P-YEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGK 463 (1428)
Q Consensus 386 ~~~~i~~~~~~~~~~~VGyN~i~FD~~flr~~f~Rn~~~-~-y~~~~~~g~sr~D~ld~~rl~~~l~p~~~~~p~~~~g~ 463 (1428)
++.++.+++. +.++|||| +.||..||+..|.|+.++ | +.+ .+..+|++.+++.+.|.
T Consensus 85 v~~~~~~~l~--~~~lv~hn-~~fD~~~L~~~~~~~g~~~p~~~~-------~~~~iDt~~l~~~~~p~----------- 143 (194)
T 2gui_A 85 VADEFMDYIR--GAELVIHN-AAFDIGFMDYEFSLLKRDIPKTNT-------FCKVTDSLAVARKMFPG----------- 143 (194)
T ss_dssp HHHHHHHHHT--TSEEEETT-HHHHHHHHHHHHHHTCSCCCCGGG-------TSEEEEHHHHHHHHSTT-----------
T ss_pred HHHHHHHHHC--CCeEEEEc-hHHhHHHHHHHHHHcCCCCccccc-------cCceeeHHHHHHHHcCC-----------
Confidence 9999999996 45899988 699999999999998765 2 221 12347777777777542
Q ss_pred CCCChHhHHHHcCCCCC--CCCChHHHHHHHHHHHHHHHhhCchhHH
Q psy2882 464 PSFKLEHLSFVNNLSHK--KAHDALSDVRATLGLARLIRNNNPRLFN 508 (1428)
Q Consensus 464 ~s~kLe~L~~~~gi~~~--~AHdAlaDv~AT~~l~~~l~~~~p~l~~ 508 (1428)
.+++|++|++++|++.. .+|+|++||++|++|+..+.++.+.+|.
T Consensus 144 ~~~~L~~l~~~~gi~~~~~~~H~Al~Da~~ta~l~~~l~~~~~~~~~ 190 (194)
T 2gui_A 144 KRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMAT 190 (194)
T ss_dssp SCCSHHHHHHHTTCCCTTCSSCCHHHHHHHHHHHHHHHTC-------
T ss_pred CCCCHHHHHHHcCcCCCCCCCCChHHHHHHHHHHHHHHHhccchhhh
Confidence 24799999999999976 4899999999999999999888776653
No 33
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=99.90 E-value=3.3e-23 Score=225.97 Aligned_cols=175 Identities=12% Similarity=0.009 Sum_probs=141.1
Q ss_pred CceEEEEeeccccCcc----CCCcceeEEEEEEeC-CceeeccceEEEEecCCCCCCChhhHhhcCCCHHHHhcCCCChH
Q psy2882 310 NSTFLWYDYETFGLNV----RRDRPFQFAAIRTDI-MLNTIDNPIMLYCKPAPDFLPDPRACLITKITPQFCLNNGIPEY 384 (1428)
Q Consensus 310 ~~~~v~~D~ETTGldp----~~DrIiqiaaIr~~~-~~~~i~~~~~~~~~p~~~~~p~pea~~itGITpe~~~~~g~~e~ 384 (1428)
..+|+|+|+||||++| ..|+|||||+|+++. +++++++ |+.+|+|......++.++.+||||++++. .+.+..
T Consensus 9 ~~~~vviD~ETTGl~~~~~~~~~~Iieigav~~~~~~g~i~~~-f~~lv~P~~~~~i~~~~~~i~GIt~~~l~-~~~~~~ 86 (204)
T 1w0h_A 9 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDT-FQQYVRPEINTQLSDFCISLTGITQDQVD-RADTFP 86 (204)
T ss_dssp SSEEEECCCEECCCTTCCTTSCCCEEEEEEEEEETTTCSEEEE-EEEEBCCSSSCSCCHHHHHHHCCCHHHHH-TSBCHH
T ss_pred cCEEEEEEEecCCcCCCCCCCCCcEEEEEEEEEECCCCEEeee-eeeEECCCCCCccCHHHHHHhCCCHHHHh-CCCCHH
Confidence 3589999999999997 679999999999984 7888877 99999998732335799999999999994 677889
Q ss_pred HHHHHHHHHHcCC-----CceEEEEcchhhhHH-HHHHHHHHccccchhhhhhcCCCCCchhhHHHHHHHhCCCCcCCCC
Q psy2882 385 KFASIIEKIFLKP-----GTISVGYNTILFDDE-ITRFMFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPY 458 (1428)
Q Consensus 385 e~~~~i~~~~~~~-----~~~~VGyN~i~FD~~-flr~~f~Rn~~~~y~~~~~~g~sr~D~ld~~rl~~~l~p~~~~~p~ 458 (1428)
+++.++.+++.+. +.++|||| ..||.. ||+.++.|..++.-.. + +..+|+.++++.+.|.
T Consensus 87 ~v~~~~~~~l~~~~~~~~~~~lv~hn-~~fD~~~~L~~~~~~~~~~~p~~-~------~~~~dt~~l~~~~~~~------ 152 (204)
T 1w0h_A 87 QVLKKVIDWMKLKELGTKYKYSLLTD-GSWDMSKFLNIQCQLSRLKYPPF-A------KKWINIRKSYGNFYKV------ 152 (204)
T ss_dssp HHHHHHHHHHHHTTBTTTBCEEEEES-STTTTHHHHHHHHHHHTCCCCGG-G------SEEEEHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEE-CcchHHHHHHHHHHHhCCCCccc-c------cceEEHHHHHHHHhCC------
Confidence 9999999999753 24699999 599996 9999999876542111 0 1337777777766442
Q ss_pred CCCCCCCCChHhHHHHcCCCCC-CCCChHHHHHHHHHHHHHHHhhC
Q psy2882 459 KNNGKPSFKLEHLSFVNNLSHK-KAHDALSDVRATLGLARLIRNNN 503 (1428)
Q Consensus 459 ~~~g~~s~kLe~L~~~~gi~~~-~AHdAlaDv~AT~~l~~~l~~~~ 503 (1428)
+..+++|+++++++|++.. .+|+|++||++|++|+..+.++.
T Consensus 153 ---~~~~~~L~~l~~~~gi~~~~~~H~Al~Da~~ta~l~~~l~~~~ 195 (204)
T 1w0h_A 153 ---PRSQTKLTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRMLQDG 195 (204)
T ss_dssp ---CGGGCSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ---CCccchHHHHHHHcCCCCCCCccCcHHHHHHHHHHHHHHHHCC
Confidence 2346899999999999987 58999999999999999887653
No 34
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=99.90 E-value=2.6e-23 Score=224.04 Aligned_cols=164 Identities=22% Similarity=0.226 Sum_probs=137.2
Q ss_pred ceEEEEeeccccCccCCCcceeEEEEEEeCCceeeccceEEEEecCCCCCCChhhHhhcCCCHHHHhcCCCChHHHHHHH
Q psy2882 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKITPQFCLNNGIPEYKFASII 390 (1428)
Q Consensus 311 ~~~v~~D~ETTGldp~~DrIiqiaaIr~~~~~~~i~~~~~~~~~p~~~~~p~pea~~itGITpe~~~~~g~~e~e~~~~i 390 (1428)
.+|+|+|+||||++|..|+|||||+|+++ +++++++ |+.+++|... .++.+..+||||++++ ..+.+..+++.++
T Consensus 12 ~~~v~iD~ETTGl~~~~~~IieIg~v~~~-~g~i~~~-f~~lv~P~~~--i~~~~~~i~GIt~~~l-~~~~~~~~v~~~~ 86 (186)
T 2p1j_A 12 ATFVVLDFETTGLDPQVDEIIEIGAVKIQ-GGQIVDE-YHTLIKPSRE--ISRKSSEITGITQEML-ENKRSIEEVLPEF 86 (186)
T ss_dssp -CEEEEEEEESCSCTTTCCEEEEEEEEEE-TTEEEEE-EEEECBCSSC--CCHHHHHHHCCCHHHH-TTCCBHHHHHHHH
T ss_pred CCEEEEEEECCCCCCCCCeEEEEEEEEEE-CCEEEEE-EEEEECcCCC--CCHHHhhhcCCCHHHH-hcCCCHHHHHHHH
Confidence 58999999999999999999999999997 5677776 8999998864 3479999999999999 4577789999999
Q ss_pred HHHHcCCCceEEEEcchhhhHHHHHHHHHHccccchhhhhhcCCCCCchhhHHHHHHHhCCCCcCCCCCCCCCCCCChHh
Q psy2882 391 EKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEH 470 (1428)
Q Consensus 391 ~~~~~~~~~~~VGyN~i~FD~~flr~~f~Rn~~~~y~~~~~~g~sr~D~ld~~rl~~~l~p~~~~~p~~~~g~~s~kLe~ 470 (1428)
.+++. +.++|||| ++||..||+..+.|..+++... ..+|++.+++.+. +.++++|++
T Consensus 87 ~~~l~--~~~lv~hn-~~fD~~~L~~~~~~~g~~~~~~---------~~iDt~~l~~~~~-----------~~~~~~L~~ 143 (186)
T 2p1j_A 87 LGFLE--DSIIVAHN-ANFDYRFLRLWIKKVMGLDWER---------PYIDTLALAKSLL-----------KLRSYSLDS 143 (186)
T ss_dssp HHHSS--SCEEEETT-HHHHHHHHHHHHHHHHCCCCCC---------CEEEHHHHHHHHT-----------CCSCCSHHH
T ss_pred HHHHC--CCEEEEEC-cHHHHHHHHHHHHHcCCCCCCC---------CEEeHHHHHHHHh-----------hcCCCCHHH
Confidence 99886 45899998 6999999999999876653221 2366677776653 245799999
Q ss_pred HHHHcCCCCCCCCChHHHHHHHHHHHHHHHhh
Q psy2882 471 LSFVNNLSHKKAHDALSDVRATLGLARLIRNN 502 (1428)
Q Consensus 471 L~~~~gi~~~~AHdAlaDv~AT~~l~~~l~~~ 502 (1428)
|++++|++..++|+|++||++|++|+.++.++
T Consensus 144 l~~~~gi~~~~~H~Al~Da~~t~~l~~~l~~~ 175 (186)
T 2p1j_A 144 VVEKLGLGPFRHHRALDDARVTAQVFLRFVEM 175 (186)
T ss_dssp HHHHTTCCSTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 99999999889999999999999999988754
No 35
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=99.89 E-value=3.8e-23 Score=230.99 Aligned_cols=180 Identities=16% Similarity=0.086 Sum_probs=135.7
Q ss_pred ceEEEEeeccccCccCCCcceeEEEEEEeCC---------------ceeeccceEEEEecCCCCCCChhhHhhcCCCHHH
Q psy2882 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIM---------------LNTIDNPIMLYCKPAPDFLPDPRACLITKITPQF 375 (1428)
Q Consensus 311 ~~~v~~D~ETTGldp~~DrIiqiaaIr~~~~---------------~~~i~~~~~~~~~p~~~~~p~pea~~itGITpe~ 375 (1428)
.+|||+|+||||+++..|+|||||+|+++.+ ++++++ |+.+|+|... .++++..+||||+++
T Consensus 10 ~~~v~iD~ETTGl~~~~~~IieIg~v~~~~~~~~~~~~~~~~~~~~~~i~~~-f~~lv~P~~~--i~~~~~~i~GIt~~~ 86 (238)
T 1y97_A 10 ETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDK-LTLCMCPERP--FTAKASEITGLSSEG 86 (238)
T ss_dssp SEEEEEEEEESSCGGGCCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEE-EEEECCCSSC--CCHHHHHHHCCCHHH
T ss_pred CeEEEEEeeCCCcCCCCCcEEEEEEEEeccccccccccccccccccccccee-eEEEECCCCc--CCHHHHHHhCCCHHH
Confidence 5799999999999999999999999999864 256666 8999999764 347999999999999
Q ss_pred HhcCCCCh--HHHHHHHHHHHcC-C-CceEEEEcchhhhHHHHHHHHHHccccchhhhhhcCCCCCchhhHHHHHHHhCC
Q psy2882 376 CLNNGIPE--YKFASIIEKIFLK-P-GTISVGYNTILFDDEITRFMFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSP 451 (1428)
Q Consensus 376 ~~~~g~~e--~e~~~~i~~~~~~-~-~~~~VGyN~i~FD~~flr~~f~Rn~~~~y~~~~~~g~sr~D~ld~~rl~~~l~p 451 (1428)
+...|.|. .++...+.+++.. . +.++||||...||..||++.|.|..+... . .+..+|++.+++.+.+
T Consensus 87 l~~~~~p~f~~~v~~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~-~-------~~~~iDt~~l~~~~~~ 158 (238)
T 1y97_A 87 LARCRKAGFDGAVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLP-R-------DTVCLDTLPALRGLDR 158 (238)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCC-T-------TCEEEEHHHHHHHHHH
T ss_pred HhhcCCCccHHHHHHHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCC-C-------CCEEEEHHHHHHHHHh
Confidence 96667665 3788999998875 2 27899999559999999999998765421 1 1233677777766653
Q ss_pred CCcCCCCCCCCCCCCChHhHHH-HcCCCCCCCCChHHHHHHHHHHHHHHHhh
Q psy2882 452 YGITWPYKNNGKPSFKLEHLSF-VNNLSHKKAHDALSDVRATLGLARLIRNN 502 (1428)
Q Consensus 452 ~~~~~p~~~~g~~s~kLe~L~~-~~gi~~~~AHdAlaDv~AT~~l~~~l~~~ 502 (1428)
..+.|+. ..+.++++|+++++ .+|++..++|+|++||++|++|+..+.+.
T Consensus 159 ~~~p~~~-~p~~~~~~L~~l~~~~~gi~~~~~H~Al~Da~~ta~l~~~l~~~ 209 (238)
T 1y97_A 159 AHSHGTR-ARGRQGYSLGSLFHRYFRAEPSAAHSAEGDVHTLLLIFLHRAAE 209 (238)
T ss_dssp HC-----------CCSHHHHHHHHHSSCCC---CHHHHHHHHHHHHHHTHHH
T ss_pred ccCcccc-CCCCCCCCHHHHHHHHhCCCCccCccHHHHHHHHHHHHHHHHHH
Confidence 2222211 01457899999999 59999999999999999999999988754
No 36
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=99.89 E-value=5.1e-23 Score=228.15 Aligned_cols=173 Identities=20% Similarity=0.108 Sum_probs=137.2
Q ss_pred ceEEEEeeccccCccCCCcceeEEEEEEeC--Ccee-eccceEEEEecCCCCCCChhhHhhcCCCHHHHhcCCCChHHHH
Q psy2882 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDI--MLNT-IDNPIMLYCKPAPDFLPDPRACLITKITPQFCLNNGIPEYKFA 387 (1428)
Q Consensus 311 ~~~v~~D~ETTGldp~~DrIiqiaaIr~~~--~~~~-i~~~~~~~~~p~~~~~p~pea~~itGITpe~~~~~g~~e~e~~ 387 (1428)
.+|+|+|+||||++|..|+|||||+|+++. ++++ +.+.|+.+++|......++++..|||||++++...+.+..+++
T Consensus 29 ~~~vviD~ETTGl~~~~~~IieIg~v~~~~~~~g~i~~~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~~v~~~~~~~~v~ 108 (224)
T 2f96_A 29 YLPVVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMAVQEEAAL 108 (224)
T ss_dssp EEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCCBCHHHHH
T ss_pred CcEEEEEeeCCCCCCCCCeeEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCCHHHHH
Confidence 489999999999999999999999999972 4443 3333899999964333457999999999986447788888888
Q ss_pred HHHHHHHcC-------CCceEEEEcchhhhHHHHHHHHHHcccc--chhhhhhcCCCCCchhhHHHHHHHhCCCCcCCCC
Q psy2882 388 SIIEKIFLK-------PGTISVGYNTILFDDEITRFMFWRNLIN--PYEREWKNNCSRWDLINVIKAFYVLSPYGITWPY 458 (1428)
Q Consensus 388 ~~i~~~~~~-------~~~~~VGyN~i~FD~~flr~~f~Rn~~~--~y~~~~~~g~sr~D~ld~~rl~~~l~p~~~~~p~ 458 (1428)
.++.+++.+ .+.++|||| ++||..||++.|.|..+. |+. .+..+|++.+++.+.|
T Consensus 109 ~~~~~~l~~~~~~~~~~~~~lV~hn-~~FD~~fL~~~~~~~g~~~~p~~--------~~~~iDt~~l~~~~~~------- 172 (224)
T 2f96_A 109 TEIFRGIRKALKANGCKRAILVGHN-SSFDLGFLNAAVARTGIKRNPFH--------PFSSFDTATLAGLAYG------- 172 (224)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEETT-HHHHHHHHHHHHHHHTCCCCCEE--------EEEEEEHHHHHHHHHS-------
T ss_pred HHHHHHHHHHhhhcccCCCEEEEeC-hhhhHHHHHHHHHHcCCCcCCcc--------ccceeeHHHHHHHHcC-------
Confidence 888888752 357899998 699999999999998765 331 1123777777776633
Q ss_pred CCCCCCCCChHhHHHHcCCCC--CCCCChHHHHHHHHHHHHHHHhhCch
Q psy2882 459 KNNGKPSFKLEHLSFVNNLSH--KKAHDALSDVRATLGLARLIRNNNPR 505 (1428)
Q Consensus 459 ~~~g~~s~kLe~L~~~~gi~~--~~AHdAlaDv~AT~~l~~~l~~~~p~ 505 (1428)
+++|++|++++|++. ..+|+|++||++|++|+..+.++.++
T Consensus 173 ------~~~L~~l~~~~gi~~~~~~~H~Al~Da~~ta~l~~~l~~~~~~ 215 (224)
T 2f96_A 173 ------QTVLAKACQAAGMEFDNREAHSARYDTEKTAELFCGIVNRWKE 215 (224)
T ss_dssp ------CCSHHHHHHHTTCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------CCCHHHHHHHcCCCcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999985 47999999999999999988876433
No 37
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=99.87 E-value=7.1e-23 Score=220.22 Aligned_cols=161 Identities=18% Similarity=0.227 Sum_probs=125.6
Q ss_pred CceEEEEeeccccCccCCCcceeEEEEEEeCCceeeccceEEEEecCCCCC--CChhhH---hhcCCCHHHHhcCCCChH
Q psy2882 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFL--PDPRAC---LITKITPQFCLNNGIPEY 384 (1428)
Q Consensus 310 ~~~~v~~D~ETTGldp~~DrIiqiaaIr~~~~~~~i~~~~~~~~~p~~~~~--p~pea~---~itGITpe~~~~~g~~e~ 384 (1428)
..+|||+|+|||||||..|+|||||+|+++.+++++++.+.++++++...+ +.+.+. .+||||++++ +.+.+..
T Consensus 8 ~~~~v~~D~ETTGL~p~~d~IiEIgaV~~d~~~~i~~~~~~~~i~~p~~~l~~~~~~~~~ih~ltGIt~~~l-~~~p~~~ 86 (186)
T 3tr8_A 8 DDNLIWLDLEMTGLDPERDRIIEIATIVTNSHLDILAEGPAFAIHQPDKLLTAMDNWNTSHHTASGLLERVK-NSSVDEV 86 (186)
T ss_dssp TTCEEEEEEEESSSCTTTCCEEEEEEEEECTTCCEEEECCCEECCCCHHHHTTSCHHHHHHHHHTSHHHHHH-TCCCCHH
T ss_pred CCcEEEEEEECCCCCCCCCceEEEEEEEEcCCeEEeeeeEEEEEeCCccccccCCcccHHHHhccCCCHHHH-hcCCCHH
Confidence 358999999999999999999999999998888888886788887543221 123333 4569999988 5788889
Q ss_pred HHHHHHHHHHcC----CCceEEEEcchhhhHHHHHHHHHHccccchhhhhhcCCCCCchhh--HHH-HHHHhCCCCcCCC
Q psy2882 385 KFASIIEKIFLK----PGTISVGYNTILFDDEITRFMFWRNLINPYEREWKNNCSRWDLIN--VIK-AFYVLSPYGITWP 457 (1428)
Q Consensus 385 e~~~~i~~~~~~----~~~~~VGyN~i~FD~~flr~~f~Rn~~~~y~~~~~~g~sr~D~ld--~~r-l~~~l~p~~~~~p 457 (1428)
+++.++.+++.+ .++++|||| ++||..||++++.|... + + .+..+| +++ +++.+.|..
T Consensus 87 ev~~~~l~fl~~~~~~~~~~lvghn-~~FD~~FL~~~~~~~~~-~----~-----~~~~iDvsTl~elar~~~P~~---- 151 (186)
T 3tr8_A 87 EAETLTLAFLEKYVSAGKSPLCGNS-VCQDRRFLSRYMPRLNQ-F----F-----HYRHLDVTTLKILAQRWAPQI---- 151 (186)
T ss_dssp HHHHHHHHHHTTTSCTTCSCEEESS-THHHHHHHHHHCHHHHH-H----S-----CSCEEEHHHHHHHHHHHCHHH----
T ss_pred HHHHHHHHHHHHhccCCCcEEEEEc-HHHhHHHHHHHHHHcCC-C----C-----CCcEEeHHHHHHHHHHHCccc----
Confidence 999999999953 235677766 89999999998766431 1 1 123466 676 899987741
Q ss_pred CCCCCCCCCChHhHHHHcCCCCCCCCChHHHHHHHHHHHHHHHhh
Q psy2882 458 YKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRATLGLARLIRNN 502 (1428)
Q Consensus 458 ~~~~g~~s~kLe~L~~~~gi~~~~AHdAlaDv~AT~~l~~~l~~~ 502 (1428)
..|+++.++|+|++||+||+++++..++.
T Consensus 152 ----------------~~~~~~~~~HrAl~Da~ati~~l~~y~~~ 180 (186)
T 3tr8_A 152 ----------------AAAHIKESQHLALQDIRDSIEELRYYRAH 180 (186)
T ss_dssp ----------------HTTSCCCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred ----------------cccCCCCCCcChHHHHHHHHHHHHHHHHH
Confidence 02889999999999999999999999875
No 38
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=99.87 E-value=6.3e-22 Score=220.86 Aligned_cols=169 Identities=21% Similarity=0.161 Sum_probs=137.9
Q ss_pred ceEEEEeeccccCccCCCcceeEEEEEEe--CCcee-eccceEEEEecCCCCCCChhhHhhcCCCHH-HHhcCCCChHHH
Q psy2882 311 STFLWYDYETFGLNVRRDRPFQFAAIRTD--IMLNT-IDNPIMLYCKPAPDFLPDPRACLITKITPQ-FCLNNGIPEYKF 386 (1428)
Q Consensus 311 ~~~v~~D~ETTGldp~~DrIiqiaaIr~~--~~~~~-i~~~~~~~~~p~~~~~p~pea~~itGITpe-~~~~~g~~e~e~ 386 (1428)
.+|+++|+||||++|..|+|||||+|+++ .++.+ +.+.|+.+++|......++++..+||||++ ++ ..+.+..++
T Consensus 37 ~~~vviD~ETTGl~~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~GIt~e~~v-~~~~~~~~v 115 (235)
T 3v9w_A 37 FYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPD-RGAVSGYEA 115 (235)
T ss_dssp EEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHCCCTTCGG-GCCBCHHHH
T ss_pred CcEEEEEEeCCCCCCCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHH-hcCCCHHHH
Confidence 47999999999999999999999999986 24443 344489999996544456899999999998 66 678888999
Q ss_pred HHHHHHHHcC-------CCceEEEEcchhhhHHHHHHHHHHcccc--chhhhhhcCCCCCchhhHHHHHHHhCCCCcCCC
Q psy2882 387 ASIIEKIFLK-------PGTISVGYNTILFDDEITRFMFWRNLIN--PYEREWKNNCSRWDLINVIKAFYVLSPYGITWP 457 (1428)
Q Consensus 387 ~~~i~~~~~~-------~~~~~VGyN~i~FD~~flr~~f~Rn~~~--~y~~~~~~g~sr~D~ld~~rl~~~l~p~~~~~p 457 (1428)
+.++.+++.+ .+.++|||| +.||..||++.+.|.+++ |+. .+..+|++.+++.+.|
T Consensus 116 l~~~~~~l~~~~~~~~~~~~~lVahN-~~fD~~~L~~~~~~~g~~~~p~~--------~~~~~Dt~~la~~~~p------ 180 (235)
T 3v9w_A 116 LHEIFKVVRKGIKASGCNRAIMVAHN-ANFDHSFMMAAAERASLKRNPFH--------PFATFDTAALAGLALG------ 180 (235)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEEEETT-THHHHHHHHHHHHHTTCCCCCEE--------EEEEEEHHHHHHHHHS------
T ss_pred HHHHHHHHHHHhhhccCCCcEEEEeC-hHHHHHHHHHHHHHcCCCCCCCC--------CCcEEEhHHHHHHHhC------
Confidence 9999999863 457899998 799999999999998764 221 1234777788777743
Q ss_pred CCCCCCCCCChHhHHHHcCCCCC--CCCChHHHHHHHHHHHHHHHhh
Q psy2882 458 YKNNGKPSFKLEHLSFVNNLSHK--KAHDALSDVRATLGLARLIRNN 502 (1428)
Q Consensus 458 ~~~~g~~s~kLe~L~~~~gi~~~--~AHdAlaDv~AT~~l~~~l~~~ 502 (1428)
+++|++|+++||++.. .+|+|++||++|++|+..+.++
T Consensus 181 -------~~~L~~l~~~~gi~~~~~~~H~Al~DA~~ta~l~~~l~~~ 220 (235)
T 3v9w_A 181 -------QTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNR 220 (235)
T ss_dssp -------CCSHHHHHHHHTCCCCTTTTTCHHHHHHHHHHHHHHHHHH
T ss_pred -------CCCHHHHHHHcCCCCCCCCCcChHHHHHHHHHHHHHHHHH
Confidence 2699999999999864 6999999999999999988764
No 39
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=99.87 E-value=6.6e-22 Score=219.33 Aligned_cols=170 Identities=12% Similarity=0.109 Sum_probs=134.5
Q ss_pred ceEEEEeeccccCccCCC--cceeEEEEEEeCC-ceeeccceEEEEecCCCCCCChhhHhhcCCCHHHHhcCCCChHHHH
Q psy2882 311 STFLWYDYETFGLNVRRD--RPFQFAAIRTDIM-LNTIDNPIMLYCKPAPDFLPDPRACLITKITPQFCLNNGIPEYKFA 387 (1428)
Q Consensus 311 ~~~v~~D~ETTGldp~~D--rIiqiaaIr~~~~-~~~i~~~~~~~~~p~~~~~p~pea~~itGITpe~~~~~g~~e~e~~ 387 (1428)
.+|+|+|+||||++|..| +|||||+|+++.+ ++++++ |+.+|+|......++.+..+||||++++ ..+.+..+++
T Consensus 31 ~~~vviD~ETTGl~~~~d~~~IieIgav~v~~~~~~i~~~-f~~lV~P~~~~~i~~~~~~ltGIt~~~v-~~a~~~~~v~ 108 (224)
T 2xri_A 31 HYFLVLDFEATCDKPQIHPQEIIEFPILKLNGRTMEIEST-FHMYVQPVVHPQLTPFCTELTGIIQAMV-DGQPSLQQVL 108 (224)
T ss_dssp SEEEEECCEECCCC-CCSSCCEEEEEEEEEETTTCCEEEE-EEEECCCSSSCSCCHHHHHHHCCCHHHH-TTCCCHHHHH
T ss_pred CeEEEEEEEcCCCCCCCCCcceEEEEEEEEecCCcEEeee-eeeEECCCCCCcCCHHHHHHhCcCHHHH-cCCCCHHHHH
Confidence 489999999999999986 9999999999976 567777 9999999863223479999999999999 5677889999
Q ss_pred HHHHHHHcCCCceEEEEcch--------hhhHHH-HHHHHHHccccchhhhhhcCCCCCchhhHHHHHHHhCCCCcCCCC
Q psy2882 388 SIIEKIFLKPGTISVGYNTI--------LFDDEI-TRFMFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPY 458 (1428)
Q Consensus 388 ~~i~~~~~~~~~~~VGyN~i--------~FD~~f-lr~~f~Rn~~~~y~~~~~~g~sr~D~ld~~rl~~~l~p~~~~~p~ 458 (1428)
.++.+++.+. ++|||| + +||..| ++.++.|..++.-.. .....|+..++++++.+ ||
T Consensus 109 ~~f~~~l~~~--~lv~hn-~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~----~~~~iD~~~~~~~~~~~------~p- 174 (224)
T 2xri_A 109 ERVDEWMAKE--GLLDPN-VKSIFVTCGDWDLKVMLPGQCQYLGLPVADY----FKQWINLKKAYSFAMGC------WP- 174 (224)
T ss_dssp HHHHHHHHHT--TTTSTT-SCEEEEESSSHHHHTHHHHHHHHHTCCCCGG----GSCEEEHHHHHHHHHTS------CC-
T ss_pred HHHHHHHhhc--ccccCC-CceEEEEeChhhHHHHHHHHHHHhCCCCccc----ccceEeHHHHHHHHhcc------CC-
Confidence 9999999743 678888 6 999997 888888876552111 01223555566666543 22
Q ss_pred CCCCCCCCChHhHHHHcCCCCC-CCCChHHHHHHHHHHHHHHHhh
Q psy2882 459 KNNGKPSFKLEHLSFVNNLSHK-KAHDALSDVRATLGLARLIRNN 502 (1428)
Q Consensus 459 ~~~g~~s~kLe~L~~~~gi~~~-~AHdAlaDv~AT~~l~~~l~~~ 502 (1428)
+++|+++++++|++.. .+|+|++||++|++|+..+.++
T Consensus 175 ------~~~L~~l~~~~gi~~~~~~H~Al~DA~~ta~l~~~l~~~ 213 (224)
T 2xri_A 175 ------KNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYR 213 (224)
T ss_dssp ------TTTHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred ------CCCHHHHHHHcCCCCCCCCcChHHHHHHHHHHHHHHHHc
Confidence 3899999999999974 6899999999999999988754
No 40
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=99.86 E-value=5.3e-22 Score=212.40 Aligned_cols=163 Identities=15% Similarity=0.205 Sum_probs=126.2
Q ss_pred CceEEEEeeccccCccCCCcceeEEEEEEeCCceeeccceEEEEecCCCCCC--ChhhH---hhcCCCHHHHhcCCCChH
Q psy2882 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLP--DPRAC---LITKITPQFCLNNGIPEY 384 (1428)
Q Consensus 310 ~~~~v~~D~ETTGldp~~DrIiqiaaIr~~~~~~~i~~~~~~~~~p~~~~~p--~pea~---~itGITpe~~~~~g~~e~ 384 (1428)
..+|+|+|+||||++|..|+|||||+|+++.+++++++.|+.+++|...+++ ++.+. .+||||++++ ..+.+..
T Consensus 4 ~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~~~~~~~~~~~~lv~P~~~i~~~i~~~~~~~~~itGIt~~~l-~~~~~~~ 82 (180)
T 2igi_A 4 ENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVK-ASTMGDR 82 (180)
T ss_dssp GGCEEEEEEEESSSCTTTCCEEEEEEEEECTTCCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHH-HCCCCHH
T ss_pred CCcEEEEEeeCCCCCCCCCceEEEEEEEEcCCCcEecCCcceEECCCHHHhhcCCHHHHHHHHHcCCCHHHH-hcCCCHH
Confidence 3589999999999999999999999999998888888778999999754322 34554 4599999998 5688889
Q ss_pred HHHHHHHHHHcC---C-CceEEEEcchhhhHHHHHHHHHHccccchhhhhhcCCCCCchhhHH-HHHHHhCCCCcCCCCC
Q psy2882 385 KFASIIEKIFLK---P-GTISVGYNTILFDDEITRFMFWRNLINPYEREWKNNCSRWDLINVI-KAFYVLSPYGITWPYK 459 (1428)
Q Consensus 385 e~~~~i~~~~~~---~-~~~~VGyN~i~FD~~flr~~f~Rn~~~~y~~~~~~g~sr~D~ld~~-rl~~~l~p~~~~~p~~ 459 (1428)
+++.++.+++.+ + ..++|||| ++||..||+..+.|.. ..| .+...|+. ++ .+++.+.|..
T Consensus 83 ~v~~~~~~~l~~~~~~~~~~lv~hn-~~fD~~fL~~~~~~~~-----~~~--~~~~~d~~-tl~~l~~~~~p~~------ 147 (180)
T 2igi_A 83 EAELATLEFLKQWVPAGKSPICGNS-IGQDRRFLFKYMPELE-----AYF--HYRYLDVS-TLKELARRWKPEI------ 147 (180)
T ss_dssp HHHHHHHHHHTTTSCTTTSCEEESS-HHHHHHHHHHHCHHHH-----HHS--CSCEEETH-HHHHHHHHHCGGG------
T ss_pred HHHHHHHHHHHHhCCCCCceEEecC-HHHHHHHHHHHHHHhc-----cCC--CcceeeHH-HHHHHHHHhChHh------
Confidence 999999999975 1 25788877 8999999999887642 112 11122322 45 4777775531
Q ss_pred CCCCCCCChHhHHHHcCCCCCCCCChHHHHHHHHHHHHHHHhh
Q psy2882 460 NNGKPSFKLEHLSFVNNLSHKKAHDALSDVRATLGLARLIRNN 502 (1428)
Q Consensus 460 ~~g~~s~kLe~L~~~~gi~~~~AHdAlaDv~AT~~l~~~l~~~ 502 (1428)
.+|++..++|+|++||+||++|++.++++
T Consensus 148 --------------~~~i~~~~~H~Al~Da~ata~l~~~~~~~ 176 (180)
T 2igi_A 148 --------------LDGFTKQGTHQAMDDIRESVAELAYYREH 176 (180)
T ss_dssp --------------GGGSCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred --------------hhCCCCcCCcCcHHHHHHHHHHHHHHHHH
Confidence 13788888999999999999999999875
No 41
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=99.85 E-value=5.4e-21 Score=220.85 Aligned_cols=173 Identities=12% Similarity=0.060 Sum_probs=137.7
Q ss_pred ceEEEEeeccccCc----cCCCcceeEEEEEEeC-CceeeccceEEEEecCCCCCCChhhHhhcCCCHHHHhcCCCChHH
Q psy2882 311 STFLWYDYETFGLN----VRRDRPFQFAAIRTDI-MLNTIDNPIMLYCKPAPDFLPDPRACLITKITPQFCLNNGIPEYK 385 (1428)
Q Consensus 311 ~~~v~~D~ETTGld----p~~DrIiqiaaIr~~~-~~~~i~~~~~~~~~p~~~~~p~pea~~itGITpe~~~~~g~~e~e 385 (1428)
..|||+|+||||++ +..|+|||||+|+++. +++++++ |+.+|+|......++.++.|||||++++ ..+.+..+
T Consensus 78 ~~~vviD~ETTGl~~~~~~~~~~IIeIgaV~v~~~~g~i~~~-f~~lV~P~~~~~i~~~~~~ihGIt~e~v-~~ap~~~e 155 (299)
T 1zbh_A 78 DYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDT-FQQYVRPEINTQLSDFCISLTGITQDQV-DRADTFPQ 155 (299)
T ss_dssp SEEEEECCEECCCTTCCTTCCCCEEEEEEEEEETTTCCEEEE-EEEEBCCSSSCSCCHHHHHHHCCCHHHH-HTSBCHHH
T ss_pred ceEEEEEeecccCCCCCCCCCCceEEEEEEEEECCCCeEeee-eeeeecCCCCCCCCHHHHHHhCCCHHHH-hcCCCHHH
Confidence 58999999999997 6789999999999986 4677777 9999999863233579999999999999 46778899
Q ss_pred HHHHHHHHHcCC-----CceEEEEcchhhhHH-HHHHHHHHccccchhhhhhcCCCCCchhhHHHHHHHhCCCCcCCCCC
Q psy2882 386 FASIIEKIFLKP-----GTISVGYNTILFDDE-ITRFMFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYK 459 (1428)
Q Consensus 386 ~~~~i~~~~~~~-----~~~~VGyN~i~FD~~-flr~~f~Rn~~~~y~~~~~~g~sr~D~ld~~rl~~~l~p~~~~~p~~ 459 (1428)
++.++.+++.+. +.++|||| ..||.. ||+.+|.|..++.-. | .+ .++|+.+++..+.+ +|
T Consensus 156 vl~~f~~~l~~~~~~~~~~~lVahn-~~fD~~~fL~~~~~~~g~~~p~--~--~~---~~iDt~~l~~~~~~----~~-- 221 (299)
T 1zbh_A 156 VLKKVIDLMKLKELGTKYKYSLLTD-GSWDMSKFLNIQCQLSRLKYPP--F--AK---KWINIRKSYGNFYK----VP-- 221 (299)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEES-SSHHHHTHHHHHHHHTTBCCCG--G--GS---EEEEHHHHHHHHHT----CC--
T ss_pred HHHHHHHHHhhcccCCCCcEEEEEe-CHHHHHHHHHHHHHHcCCCCCc--c--cc---hHHHHHHHHHHHhC----CC--
Confidence 999999999753 25899999 599999 999999987665211 1 01 23666655544422 22
Q ss_pred CCCCCCCChHhHHHHcCCCCC-CCCChHHHHHHHHHHHHHHHhh
Q psy2882 460 NNGKPSFKLEHLSFVNNLSHK-KAHDALSDVRATLGLARLIRNN 502 (1428)
Q Consensus 460 ~~g~~s~kLe~L~~~~gi~~~-~AHdAlaDv~AT~~l~~~l~~~ 502 (1428)
..+++|+++++++|++.. .+|+|++||++|++|+..+.+.
T Consensus 222 ---~~~~~L~~l~~~~gi~~~g~~H~Al~DA~ata~l~~~l~~~ 262 (299)
T 1zbh_A 222 ---RSQTKLTIMLEKLGMDYDGRPNCGLDDSKNIARIAVRMLQD 262 (299)
T ss_dssp ---GGGCSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred ---CCCccHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHHHHh
Confidence 124899999999999987 4899999999999999988765
No 42
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=99.85 E-value=1.6e-21 Score=211.58 Aligned_cols=163 Identities=19% Similarity=0.210 Sum_probs=126.3
Q ss_pred ceEEEEeeccccCccCCCcceeEEEEEEeCCceeeccceEEEEecCCCC----CC-ChhhHhhcCCCHHHHhcCCCChHH
Q psy2882 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDF----LP-DPRACLITKITPQFCLNNGIPEYK 385 (1428)
Q Consensus 311 ~~~v~~D~ETTGldp~~DrIiqiaaIr~~~~~~~i~~~~~~~~~p~~~~----~p-~pea~~itGITpe~~~~~g~~e~e 385 (1428)
.+|+|+|+||||++|..|+|||||+|+++++++++++.|+.+++|...+ .+ .+++..+||||++++ ..+.+..+
T Consensus 9 ~~~vviD~ETTGl~p~~d~IieIgav~~~~~~~~~~~~~~~~v~p~~~i~~~~~~~~~~~~~itGIt~~~l-~~~p~~~e 87 (194)
T 2gbz_A 9 DRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHSLETLEAMDEWNRNQHRRSGLWQRVL-DSQVTHAQ 87 (194)
T ss_dssp CEEEEEEEEESCSCTTTCCEEEEEEEEEETTCCEEEECCCEECCCCHHHHHTSCSHHHHHHHHHTHHHHHH-HCCCCHHH
T ss_pred CCEEEEEeECCCCCCCCCccEEEEEEEEcCCcceeccCceEEEeCCHHHhhccchHHHHHHHhhCCCHHHH-hcCCCHHH
Confidence 5899999999999999999999999998877666765589999987533 11 134556799999998 56888899
Q ss_pred HHHHHHHHHcCC---C-ceEEEEcchhhhHHHHHHHHHHccccchhhhhhcCCCCCchhhHHHHHHHhCCCCcCCCCCCC
Q psy2882 386 FASIIEKIFLKP---G-TISVGYNTILFDDEITRFMFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNN 461 (1428)
Q Consensus 386 ~~~~i~~~~~~~---~-~~~VGyN~i~FD~~flr~~f~Rn~~~~y~~~~~~g~sr~D~ld~~rl~~~l~p~~~~~p~~~~ 461 (1428)
++.++.+++.+. + .++|||| ++||..||+..|.|.. + .+ .+...|+..+..+++.+.|.
T Consensus 88 v~~~~~~~l~~~~~~~~~~lvghn-~~FD~~fL~~~~~~~~--~---~~--~~~~~d~~~l~~l~~~~~p~--------- 150 (194)
T 2gbz_A 88 AEAQTVAFLGEWIRAGASPMCGNS-ICQDRRFLHRQMSRLE--R---YF--HYRNLDVSTIKELARRWAPA--------- 150 (194)
T ss_dssp HHHHHHHHHTTTCCTTSSCEEESS-HHHHHHHHHHHCHHHH--H---HS--CSCEEEHHHHHHHHHHHCGG---------
T ss_pred HHHHHHHHHHHhCCCCCceEEecC-HHHhHHHHHHHHHHhc--c---cC--CCccccHHHHHHHHHHhCHH---------
Confidence 999999999752 1 2388877 8999999999887743 1 11 12334666666677777553
Q ss_pred CCCCCChHhHHHHcCCCCCCCCChHHHHHHHHHHHHHHHhh
Q psy2882 462 GKPSFKLEHLSFVNNLSHKKAHDALSDVRATLGLARLIRNN 502 (1428)
Q Consensus 462 g~~s~kLe~L~~~~gi~~~~AHdAlaDv~AT~~l~~~l~~~ 502 (1428)
++ .+++..++|+|++||+||++|++.++++
T Consensus 151 ---------~~--~~i~~~~~H~Al~Da~ata~ll~~~~~~ 180 (194)
T 2gbz_A 151 ---------VA--SGFAKSSAHTALSDVRDSIDELRHYRQF 180 (194)
T ss_dssp ---------GG--TTCCCCSCCSHHHHHHHHHHHHHHHHTT
T ss_pred ---------HH--hCCCCCCCcccHHHHHHHHHHHHHHHHH
Confidence 22 2577788999999999999999999876
No 43
>3i1m_R 30S ribosomal protein S18; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_R* 1vs5_R 3i1o_R 3i1q_R 3i1s_R 3i1z_R 3i21_R 3izv_V* 3izw_V* 3kc4_R 3or9_R 3ora_R 3sfs_R* 3uoq_R* 4gaq_R* 4gas_R* 2qal_R* 1p6g_R 1p87_R 2aw7_R ...
Probab=99.83 E-value=6.7e-22 Score=178.36 Aligned_cols=67 Identities=48% Similarity=0.829 Sum_probs=47.4
Q ss_pred CccccCCcccccccCCCCccccCCHHHHHhccccCCccccccccCcCHHHhhhHhhhcccccchhcc
Q psy2882 114 NPLFKRKKFCRFTVMNIKQIDYKDIETLKDFIQENGKIMAARLTGTCSHYQRQITFIRKNMQVILLK 180 (1428)
Q Consensus 114 ~~~~~~~k~c~~~~~~~~~~dyk~~~~l~~fi~~~gki~prr~tg~~~~~qr~~~~aik~~~vil~~ 180 (1428)
.++++|+|+|+||.++++.|||||+++|++|||++|||+|||+||+|+|+||+|++|||+||.+.+=
T Consensus 2 ~~~~~r~k~C~fc~~~~~~iDYknv~lL~~Fis~~GkIlprr~TGlc~k~QR~l~~AIKrAR~~gLl 68 (75)
T 3i1m_R 2 ARYFRRRKFCRFTAEGVQEIDYKDIATLKNYITESGKIVPSRITGTRAKYQRQLARAIKRARYLSLL 68 (75)
T ss_dssp ------------------CCSTTCHHHHGGGBCTTCCBCCHHHHCCCHHHHHHHHHHHHHHHTTTSS
T ss_pred CccCCCCCCCCcccCCCCcCCcCCHHHHHHHcCcCCCCcCccccccCHHHHHHHHHHHHHHHHhccC
Confidence 4678899999999999999999999999999999999999999999999999999999999998763
No 44
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=99.83 E-value=2.5e-20 Score=218.87 Aligned_cols=173 Identities=13% Similarity=0.058 Sum_probs=136.8
Q ss_pred ceEEEEeeccccCc----cCCCcceeEEEEEEeC-CceeeccceEEEEecCCCCCCChhhHhhcCCCHHHHhcCCCChHH
Q psy2882 311 STFLWYDYETFGLN----VRRDRPFQFAAIRTDI-MLNTIDNPIMLYCKPAPDFLPDPRACLITKITPQFCLNNGIPEYK 385 (1428)
Q Consensus 311 ~~~v~~D~ETTGld----p~~DrIiqiaaIr~~~-~~~~i~~~~~~~~~p~~~~~p~pea~~itGITpe~~~~~g~~e~e 385 (1428)
..|||+|+||||++ +..|+|||||+|+++. +++++++ |+.+|+|......++.++.|||||++++. .+.+..+
T Consensus 128 ~~~vviD~ETTGl~~~~~~~~deIIEIgaV~vd~~~g~i~~~-f~~lVkP~~~~~I~~~~t~ihGIT~e~v~-~ap~~~e 205 (349)
T 1zbu_A 128 DYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDT-FQQYVRPEINTQLSDFCISLTGITQDQVD-RADTFPQ 205 (349)
T ss_dssp SEEEECCCEECCCTTCCTTCCCCEEECCEEEEETTTTEEEEE-ECCBEECSSSCSCCHHHHHHHCCCHHHHH-TSEEHHH
T ss_pred CeEEEEEEecCCCCCcCCCCCCeEEEEEEEEEECCCceEeEE-EEEEECCCCCCCCCHHHHHHhCCCHHHHh-CCCCHHH
Confidence 58999999999995 6789999999999986 5677777 99999998742335799999999999994 5777799
Q ss_pred HHHHHHHHHcCC-----CceEEEEcchhhhHH-HHHHHHHHccccchhhhhhcCCCCCchhhHHHHHHHhCCCCcCCCCC
Q psy2882 386 FASIIEKIFLKP-----GTISVGYNTILFDDE-ITRFMFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYK 459 (1428)
Q Consensus 386 ~~~~i~~~~~~~-----~~~~VGyN~i~FD~~-flr~~f~Rn~~~~y~~~~~~g~sr~D~ld~~rl~~~l~p~~~~~p~~ 459 (1428)
++.++..++.+. +.++|||| ..||.. ||+.+|.|..++.-. | .+ .++|+.+++..+.+ +|
T Consensus 206 Vl~~f~~~l~~~~~~~~~~~lVaHN-a~FD~~~fL~~~~~~~g~~~p~--~--~~---~~iDt~~l~~~~~~----~~-- 271 (349)
T 1zbu_A 206 VLKKVIDLMKLKELGTKYKYSLLTD-GSWDMSKFLNIQCQLSRLKYPP--F--AK---KWINIRKSYGNFYK----VP-- 271 (349)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEES-SSHHHHTHHHHHHHHTTBCCCG--G--GS---EEEEHHHHHHHHHT----CC--
T ss_pred HHHHHHHHHhcccccCCCcEEEEEC-cHhhHHHHHHHHHHHhCCCCcc--c--cc---hHHHHHHHHHHHhc----CC--
Confidence 999999999653 15899999 589999 999999987655211 1 01 23566555544422 22
Q ss_pred CCCCCCCChHhHHHHcCCCCC-CCCChHHHHHHHHHHHHHHHhh
Q psy2882 460 NNGKPSFKLEHLSFVNNLSHK-KAHDALSDVRATLGLARLIRNN 502 (1428)
Q Consensus 460 ~~g~~s~kLe~L~~~~gi~~~-~AHdAlaDv~AT~~l~~~l~~~ 502 (1428)
..+++|++|++++|++.. .+|+|++||++|++|+..+.+.
T Consensus 272 ---~~~~~L~~l~~~~gi~~~g~~HrAl~DA~ata~ll~~ll~~ 312 (349)
T 1zbu_A 272 ---RSQTKLTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRMLQD 312 (349)
T ss_dssp ---GGGGSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred ---CCCCCHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 124899999999999987 4899999999999999988765
No 45
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=99.82 E-value=2e-20 Score=216.81 Aligned_cols=173 Identities=17% Similarity=0.121 Sum_probs=134.2
Q ss_pred ceEEEEeeccccCccCCC---cceeEEEEEEeC-Cceeec--cceEEEEecCCCCCCChhhHhhcCCCHHHHhcCCCChH
Q psy2882 311 STFLWYDYETFGLNVRRD---RPFQFAAIRTDI-MLNTID--NPIMLYCKPAPDFLPDPRACLITKITPQFCLNNGIPEY 384 (1428)
Q Consensus 311 ~~~v~~D~ETTGldp~~D---rIiqiaaIr~~~-~~~~i~--~~~~~~~~p~~~~~p~pea~~itGITpe~~~~~g~~e~ 384 (1428)
.+|||+|+||||+++..| +|||||+|++|. ++++++ + |+.+++|......++++..|||||++++ ..+.+..
T Consensus 19 ~~~vviD~ETTGl~~~~d~~~eIIEIgaV~vd~~~g~i~~~~~-f~~lV~P~~~p~i~~~~~~ltGIt~e~v-~~ap~~~ 96 (308)
T 3cg7_A 19 DTLLILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDIS-FNKYVKPVLNRTLTKNCVDFTGIPQRSI-DTADTFD 96 (308)
T ss_dssp SEEEEEEEEECCBTTBCSCCCCEEEEEEEEEETTTTEEEEEEE-EEEECBCSSBCSCCHHHHHHHCCCHHHH-HTSCBHH
T ss_pred CeEEEEEeecCCCCCCCCCCCCeEEEEEEEEEcCCCEEeeccc-eeeEECCCCCCCCCHHHHHHcCCCHHHH-hcCCCHH
Confidence 579999999999999988 999999999985 777776 6 8999999864212468999999999999 4588889
Q ss_pred HHHHHHHHHHcCCCceEEEEcch------hhhH-HHHHHHHHHccccc--hhhhhhcCCCCCchhhHHHHHHHhCCCCcC
Q psy2882 385 KFASIIEKIFLKPGTISVGYNTI------LFDD-EITRFMFWRNLINP--YEREWKNNCSRWDLINVIKAFYVLSPYGIT 455 (1428)
Q Consensus 385 e~~~~i~~~~~~~~~~~VGyN~i------~FD~-~flr~~f~Rn~~~~--y~~~~~~g~sr~D~ld~~rl~~~l~p~~~~ 455 (1428)
+++.++.+++.+. .+|||| + .||. .||+.++.|..++. +...| +|++++++.+.|..
T Consensus 97 evl~~f~~~l~~~--~lvahn-~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~---------iDt~~l~~~~~~~~-- 162 (308)
T 3cg7_A 97 VVYEQFQQWLITL--GLEEGK-FAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQY---------INLYKIFTNEMDRM-- 162 (308)
T ss_dssp HHHHHHHHHHHHH--CCCTTS-EEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEE---------EEHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhC--CcCCcc-eEEeccCcccHHHHHHHHHHHcCCCCchhhcce---------eeHHHHHHHHhccc--
Confidence 9999999999752 355655 4 8999 79999999876552 11222 56666665554321
Q ss_pred CCCCCCCCCCCChHhHHHHcCCCCCCC-CChHHHHHHHHHHHHHHHh
Q psy2882 456 WPYKNNGKPSFKLEHLSFVNNLSHKKA-HDALSDVRATLGLARLIRN 501 (1428)
Q Consensus 456 ~p~~~~g~~s~kLe~L~~~~gi~~~~A-HdAlaDv~AT~~l~~~l~~ 501 (1428)
+. .....+++|+++++++|++...+ |+|++||++|++|+..+.+
T Consensus 163 -~~-~~~~~~~~L~~l~~~~gi~~~~~~HrAl~DA~ata~l~~~l~~ 207 (308)
T 3cg7_A 163 -GP-KELSATTNIGKMNEYYDLPTIGRAHDAMDDCLNIATILQRMIN 207 (308)
T ss_dssp -CC-CCCCCCSHHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHH
T ss_pred -cc-cccccCcCHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 00 00123689999999999998764 9999999999999988764
No 46
>2hba_A BL17, 50S ribosomal protein L9; NTL9, K12M, RNA binding protein; 1.25A {Geobacillus stearothermophilus} SCOP: d.100.1.1 PDB: 1cqu_A 2hbb_A 2hvf_A
Probab=99.82 E-value=3e-21 Score=161.77 Aligned_cols=51 Identities=45% Similarity=0.697 Sum_probs=49.6
Q ss_pred ccchhcccccCccCCCCEEEecccccccccccCCcEeccCHHHHHHHHHHH
Q psy2882 174 MQVILLKDIPNLGKLGEIIKVKNGYARNFLIPKNKARHATKFVIKEFEEKR 224 (1428)
Q Consensus 174 ~~vil~~dV~~lG~~GdvV~Vk~GyaRN~Lip~~lA~~at~~n~~~~~~~~ 224 (1428)
|+|||++||+|||++||||+|++|||||||||+|+|++||++|++.++.++
T Consensus 1 MkVIL~~dV~~lG~~Gdvv~V~~GYaRN~LiP~g~A~~AT~~n~~~~~~~~ 51 (52)
T 2hba_A 1 MKVIFLKDVKGMGKKGEIKNVADGYANNFLFKQGLAIEATPANLKALEAQK 51 (52)
T ss_dssp CEEEESSCBTTTBCTTCEEECCHHHHHHTTTTTTSEEECCHHHHHHHHHHH
T ss_pred CEEEEcccccccCcCCCEEEEcCCceehhhccCCceeeCCHHHHHHHHHhh
Confidence 799999999999999999999999999999999999999999999998875
No 47
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=99.81 E-value=2.3e-20 Score=201.61 Aligned_cols=160 Identities=16% Similarity=0.185 Sum_probs=119.6
Q ss_pred CceEEEEeeccccCccCCC-cceeEEEEEEeCCceeeccceEEEEecCCCCCCChhhHhhcCCCHHHHhcCCCChHHHHH
Q psy2882 310 NSTFLWYDYETFGLNVRRD-RPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKITPQFCLNNGIPEYKFAS 388 (1428)
Q Consensus 310 ~~~~v~~D~ETTGldp~~D-rIiqiaaIr~~~~~~~i~~~~~~~~~p~~~~~p~pea~~itGITpe~~~~~g~~e~e~~~ 388 (1428)
..+|+|+|+||||++|..+ +|+|||+|. .+++++ ++.+++|...+ ++.+..+||||++++. .+.+..+++.
T Consensus 4 ~~~~vviD~ETTGl~~~~~~~iiei~~v~--~~g~~i---~~~lV~P~~~i--~~~~~~i~GIt~~~l~-~a~~~~~v~~ 75 (189)
T 1wlj_A 4 SREVVAMDCEMVGLGPHRESGLARCSLVN--VHGAVL---YDKFIRPEGEI--TDYRTRVSGVTPQHMV-GATPFAVARL 75 (189)
T ss_dssp --CEEEEEEEEEEETTTTEEEEEEEEEEC--TTCCEE---EEEEEECSSCE--EECCHHHHCCCHHHHT-TCEEHHHHHH
T ss_pred CCeEEEEEeECcCcCCCCCceEEEEEEEe--CCCCEE---EeeEecCCCCC--CccccCCCCCCHHHHc-CCCCHHHHHH
Confidence 4589999999999999985 678999985 455665 67899998643 3689999999999994 5777799999
Q ss_pred HHHHHHcCCCceEEEEcchhhhHHHHHHHHHHccccchhhhhhcCCCCCchhhHHHHHHHhCCCCcCCCCCCCCCCCCCh
Q psy2882 389 IIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKL 468 (1428)
Q Consensus 389 ~i~~~~~~~~~~~VGyN~i~FD~~flr~~f~Rn~~~~y~~~~~~g~sr~D~ld~~rl~~~l~p~~~~~p~~~~g~~s~kL 468 (1428)
++.+++. +.++|||| +.||..||+..+ + +++++|++.++...+. ..|| +..+++|
T Consensus 76 ~~~~~l~--~~~lV~hn-~~fD~~~L~~~~-----~-----------~~~~idt~~~~~~~~~--~~~p----~~~~~~L 130 (189)
T 1wlj_A 76 EILQLLK--GKLVVGHD-LKHDFQALKEDM-----S-----------GYTIYDTSTDRLLWRE--AKLD----HCRRVSL 130 (189)
T ss_dssp HHHHHHT--TSEEEESS-HHHHHHHTTCCC-----T-----------TCEEEEGGGCHHHHHH--HTC---------CCH
T ss_pred HHHHHHC--CCEEEECC-cHHHHHHHHHhC-----C-----------CCceechHhhhhhhhc--ccCC----CCCCccH
Confidence 9999996 57999998 789999986431 1 1233555544221110 0133 2467999
Q ss_pred HhHHHH-cCCCCCC---CCChHHHHHHHHHHHHHHHhh
Q psy2882 469 EHLSFV-NNLSHKK---AHDALSDVRATLGLARLIRNN 502 (1428)
Q Consensus 469 e~L~~~-~gi~~~~---AHdAlaDv~AT~~l~~~l~~~ 502 (1428)
++|+++ +|++... +|+|++||++|++|++++.+.
T Consensus 131 ~~l~~~~lgi~~~~~~~~H~Al~Da~ata~l~~~l~~~ 168 (189)
T 1wlj_A 131 RVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQRI 168 (189)
T ss_dssp HHHHHHHTCCCCSCCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 999998 7999877 999999999999999988753
No 48
>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R 1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R* 1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U* 1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...
Probab=99.81 E-value=5.9e-21 Score=177.62 Aligned_cols=65 Identities=31% Similarity=0.409 Sum_probs=60.8
Q ss_pred ccccCCcccccccCCCCccccCCHHHHHhccccCCccccccccCcCHHHhhhHhhhcccccchhc
Q psy2882 115 PLFKRKKFCRFTVMNIKQIDYKDIETLKDFIQENGKIMAARLTGTCSHYQRQITFIRKNMQVILL 179 (1428)
Q Consensus 115 ~~~~~~k~c~~~~~~~~~~dyk~~~~l~~fi~~~gki~prr~tg~~~~~qr~~~~aik~~~vil~ 179 (1428)
++++++++||||.++++.|||||+++|++|||++|||+|||+||+|+||||+|++|||+||.+.+
T Consensus 14 ~~~~r~k~C~~c~~~~~~iDYKnv~lL~~Fise~GkIlprriTGlc~k~QR~l~~AIKrAR~lgL 78 (88)
T 2vqe_R 14 RRPSRKAKVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRRTGLSGKEQRILAKTIKRARILGL 78 (88)
T ss_dssp --CCCSCCTTTSCCCEETTCTTCHHHHGGGBCSSSCBCCHHHHCCCHHHHHHHHHHHHHHHHTTS
T ss_pred ccCCCCCCCCccCCCCCcCCcCCHHHHHHHcccCCCCCchhhcCCCHHHHHHHHHHHHHHHHHhc
Confidence 44678999999999999999999999999999999999999999999999999999999998876
No 49
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=99.79 E-value=4.8e-20 Score=178.82 Aligned_cols=80 Identities=16% Similarity=0.328 Sum_probs=74.4
Q ss_pred CHHHHHHHHhcCCcEEEEEeeccccccccccCCcceEEEEEEEEEeCcccHHHHHHHcCCCcceeeeeEeeccCcccccc
Q psy2882 1 MIERYKKIIISGKGKIHRLEDWGRRSLAYQIKKVIKAHYICFNIEINKKTLLEIETSFRFNDAILRYLTIKTKKVETEES 80 (1428)
Q Consensus 1 ~i~~~~~~i~~~gg~i~~~e~wG~r~LAY~I~k~~~G~Y~~~~f~~~~~~v~eler~lrl~e~VlR~l~vk~~~~~~~~~ 80 (1428)
+++++.++|+++||+|.++++||+|+|||+|+|+++|+|++++|+++|++++||||.||+|++|||||++|+++...+++
T Consensus 22 ~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~~~G~Y~l~~f~a~~~~i~eler~lr~~~~VlR~l~vk~~~~~~~~~ 101 (101)
T 1cqm_A 22 EKEIIQRALENYGARVEKVAILGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLARELRIRDNVRRVMVVKSQEPFLANA 101 (101)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECHHHHHHHHHHHHTSTTEEEEEEEECSSCCC---
T ss_pred HHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeChHHHHHHHHHhcCCcceEEEEEEEecccccCCC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999998776553
No 50
>3r8n_F 30S ribosomal protein S6; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_F 3fih_F* 3iy8_F 3j18_F* 2wwl_F 3oar_F 3oaq_F 3ofb_F 3ofa_F 3ofp_F 3ofx_F 3ofy_F 3ofo_F 3r8o_F 4a2i_F 4gd1_F 4gd2_F 2gy9_F 2gyb_F
Probab=99.78 E-value=3e-20 Score=179.86 Aligned_cols=80 Identities=55% Similarity=0.931 Sum_probs=76.9
Q ss_pred CHHHHHHHHhcCCcEEEEEeeccccccccccCCcceEEEEEEEEEeCcccHHHHHHHcCCCcceeeeeEeeccCcccccc
Q psy2882 1 MIERYKKIIISGKGKIHRLEDWGRRSLAYQIKKVIKAHYICFNIEINKKTLLEIETSFRFNDAILRYLTIKTKKVETEES 80 (1428)
Q Consensus 1 ~i~~~~~~i~~~gg~i~~~e~wG~r~LAY~I~k~~~G~Y~~~~f~~~~~~v~eler~lrl~e~VlR~l~vk~~~~~~~~~ 80 (1428)
+++++.++|+++||+|.++++||+|+|||+|+|+++|+|++++|+++|++++||||.||+|++|||||++|+++...++|
T Consensus 21 ~~~~~~~~i~~~gg~i~~~e~wG~r~LAY~I~k~~~G~Y~l~~f~a~~~~i~eler~lr~~~~VlR~livk~~~~~~~~s 100 (100)
T 3r8n_F 21 MIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEAS 100 (100)
T ss_dssp HHHHHHHHHHTTTCBCCCCEEEEEECCSSCTTSCSCEEEEECCEEECTTTTHHHHHHHHHCTTEEECCCCCCSSCCCCCC
T ss_pred HHHHHHHHHHHCCCEEEEEEeeecccCCeEcCCCCEEEEEEEEEEeChHHHHHHHHHhcCCCCeEEEEEEEeCccccCCC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999887765
No 51
>3i1m_F 30S ribosomal protein S6; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1p6g_F 1p87_F* 1vs7_F* 2avy_F 2aw7_F 1vs5_F 2i2u_F 2i2p_F* 2qan_F* 2qb9_F* 2qbb_F* 2qbd_F 2qbf_F 2qbh_F* 2qbj_F* 2qou_F* 2qow_F* 2qoy_F* 2qp0_F* 2vho_F ...
Probab=99.78 E-value=3.7e-20 Score=187.39 Aligned_cols=87 Identities=51% Similarity=0.868 Sum_probs=78.6
Q ss_pred CHHHHHHHHhcCCcEEEEEeeccccccccccCCcceEEEEEEEEEeCcccHHHHHHHcCCCcceeeeeEeeccCcccccc
Q psy2882 1 MIERYKKIIISGKGKIHRLEDWGRRSLAYQIKKVIKAHYICFNIEINKKTLLEIETSFRFNDAILRYLTIKTKKVETEES 80 (1428)
Q Consensus 1 ~i~~~~~~i~~~gg~i~~~e~wG~r~LAY~I~k~~~G~Y~~~~f~~~~~~v~eler~lrl~e~VlR~l~vk~~~~~~~~~ 80 (1428)
+++++.++|+++||+|.++++||+|+|||+|+|+++|||++|+|+++|++++||+|.||+|++|||||+||+++....+|
T Consensus 21 ~ve~~~~~I~~~GG~I~~ve~wG~R~LAY~I~K~~~G~Y~l~~f~a~~~~i~ELer~lri~e~VLR~livk~d~~~~~~s 100 (135)
T 3i1m_F 21 MIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEAS 100 (135)
T ss_dssp HHHHHHHHHHHTTCEECCCEEEEEECCSSCTTSSSCEEEEECCEECCTTHHHHHHHHHHHCSSEESCCBCCCSSCCCSCC
T ss_pred HHHHHHHHHHHCCCEEEEEEeeccccCceEcCCCCeEEEEEEEEEeCHHHHHHHHHHhcCCCCeEEEEEEEeccCccCCC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHH
Q psy2882 81 SFLRFIQ 87 (1428)
Q Consensus 81 ~~~e~~~ 87 (1428)
|+++...
T Consensus 101 ~~~~~~~ 107 (135)
T 3i1m_F 101 PMVKAKD 107 (135)
T ss_dssp -------
T ss_pred hhhhhhh
Confidence 9987554
No 52
>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1
Probab=99.77 E-value=2.4e-19 Score=176.31 Aligned_cols=80 Identities=30% Similarity=0.542 Sum_probs=75.7
Q ss_pred CHHHHHHHHhcCCcEEEEEeeccccccccccCCcceEEEEEEEEEe-CcccHHHHHHHcCCCcceeeeeEeeccCccccc
Q psy2882 1 MIERYKKIIISGKGKIHRLEDWGRRSLAYQIKKVIKAHYICFNIEI-NKKTLLEIETSFRFNDAILRYLTIKTKKVETEE 79 (1428)
Q Consensus 1 ~i~~~~~~i~~~gg~i~~~e~wG~r~LAY~I~k~~~G~Y~~~~f~~-~~~~v~eler~lrl~e~VlR~l~vk~~~~~~~~ 79 (1428)
+++++.++|+++||+|.++++||+|+|||||+|+++|+|++++|++ +|++++||||.||+|++|||||++|+++....+
T Consensus 28 ~v~~~~~~i~~~Gg~i~~~e~wG~R~LAY~I~K~~~G~Y~l~~f~a~~~~~i~eler~lr~~e~VlR~livk~~~~~~~~ 107 (110)
T 2j5a_A 28 KFEQVKEFIKQKGGEILYEEDWGMRQLAYPIQKFNNARYFLVQFKTENPQLPNELDFQLKIDEDVIRWLNIQIKESEVKK 107 (110)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEEEEECSSCSSSCSEEEEEEEEEEESCTTHHHHHHHHHHHCTTEEEEEEEEECGGGCCC
T ss_pred HHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeCCHHHHHHHHHHhCCCcCeEEEEEEEcccccccc
Confidence 3789999999999999999999999999999999999999999999 999999999999999999999999999776655
Q ss_pred c
Q psy2882 80 S 80 (1428)
Q Consensus 80 ~ 80 (1428)
.
T Consensus 108 ~ 108 (110)
T 2j5a_A 108 N 108 (110)
T ss_dssp C
T ss_pred c
Confidence 3
No 53
>1vmb_A 30S ribosomal protein S6; TM0603, structural genomics, JCSG, structure initiative, PSI, joint center for structural GENO translation; 1.70A {Thermotoga maritima} SCOP: d.58.14.1
Probab=99.77 E-value=1.6e-19 Score=183.73 Aligned_cols=85 Identities=34% Similarity=0.534 Sum_probs=80.1
Q ss_pred CHHHHHHHHhcC-CcEEEEEeeccccccccccCCcceEEEEEEEEEeCcccHHHHHHHcCCCcceeeeeEeeccCccccc
Q psy2882 1 MIERYKKIIISG-KGKIHRLEDWGRRSLAYQIKKVIKAHYICFNIEINKKTLLEIETSFRFNDAILRYLTIKTKKVETEE 79 (1428)
Q Consensus 1 ~i~~~~~~i~~~-gg~i~~~e~wG~r~LAY~I~k~~~G~Y~~~~f~~~~~~v~eler~lrl~e~VlR~l~vk~~~~~~~~ 79 (1428)
+++++.++|+++ ||+|.++++||+|+|||||+|+++|+|++++|+++|++++||+|.||+|++|||||+||+++....+
T Consensus 39 ~ve~~~~~I~~~~GG~I~~ve~wG~R~LAY~I~K~~~G~Yvl~~f~a~~~~i~ELer~lri~e~VLR~livK~~~~~~~~ 118 (140)
T 1vmb_A 39 LVERVKKIIEERVKGKIDKVERMGMRKFAYEIKKFNEGDYTVIYFRCDGQNLQELENFYRVTPEIIRWQTFRRFDLEKKE 118 (140)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECSSSTHHHHHHHHTCTTEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEEEeecCcccccccCCCCEEEEEEEEEEECHHHHHHHHHHhcCCcceeEEEEEEecccccch
Confidence 378999999999 9999999999999999999999999999999999999999999999999999999999999888877
Q ss_pred chhhHH
Q psy2882 80 SSFLRF 85 (1428)
Q Consensus 80 ~~~~e~ 85 (1428)
++++.+
T Consensus 119 s~~~~~ 124 (140)
T 1vmb_A 119 RKAQRE 124 (140)
T ss_dssp HHHHC-
T ss_pred hhhhcc
Confidence 777764
No 54
>3r3t_A 30S ribosomal protein S6; structural genomics, center for structural genomics of infec diseases, csgid, beta-barrel, cytosol; 2.30A {Bacillus anthracis}
Probab=99.72 E-value=1.9e-19 Score=173.96 Aligned_cols=74 Identities=26% Similarity=0.620 Sum_probs=71.3
Q ss_pred CHHHHHHHHhcCCcEEEEEeeccccccccccCCcceEEEEEEEEEeCcccHHHHHHHcCCCcceeeeeEeeccC
Q psy2882 1 MIERYKKIIISGKGKIHRLEDWGRRSLAYQIKKVIKAHYICFNIEINKKTLLEIETSFRFNDAILRYLTIKTKK 74 (1428)
Q Consensus 1 ~i~~~~~~i~~~gg~i~~~e~wG~r~LAY~I~k~~~G~Y~~~~f~~~~~~v~eler~lrl~e~VlR~l~vk~~~ 74 (1428)
+++++.++|+++||+|.++++||+|+|||||+|+++|+|++++|+++|++++||||.||+|++|||||++|+++
T Consensus 25 ~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~~~G~Y~l~~f~a~~~~i~eler~lr~~~~VlR~livk~~~ 98 (99)
T 3r3t_A 25 LVERFAGVLTNNGAEIINTKEWGKRRLAYEINDLREGFYMILNVNANAEAINEFDRLAKINEDILRHIVVKEEE 98 (99)
T ss_dssp HHHHHHHHHHTTTCCCCCCCCCCSCCCCCCCCCCCCSCCCCCCCCCCHHHHHHHHHHHHHCTTCCCCCCCCCC-
T ss_pred HHHHHHHHHHHCCCEEEEEEEeeccccCcCcCCCCEEEEEEEEEEeCHHHHHHHHHHhcCCCCeEEEEEEEecC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999985
No 55
>3bbn_R Ribosomal protein S18; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=99.72 E-value=9.7e-19 Score=165.46 Aligned_cols=65 Identities=26% Similarity=0.374 Sum_probs=48.8
Q ss_pred ccccCCcccccccCCCCccccCCHHHHHhccccCCccccccccCcCHHHhhhHhhhcccccchhccc
Q psy2882 115 PLFKRKKFCRFTVMNIKQIDYKDIETLKDFIQENGKIMAARLTGTCSHYQRQITFIRKNMQVILLKD 181 (1428)
Q Consensus 115 ~~~~~~k~c~~~~~~~~~~dyk~~~~l~~fi~~~gki~prr~tg~~~~~qr~~~~aik~~~vil~~d 181 (1428)
+++.|++.||+|.. +.|||||+++|++|||++|||+|||+||+|++|||+|++|||+||.+.+=.
T Consensus 12 kr~~rr~~cpi~~~--~~IDYKnv~lL~~FIse~GKIlpRRiTGlcaK~QR~l~~AIKrAR~laLLP 76 (103)
T 3bbn_R 12 KRSFRRRLPPIQSG--DRIDYRNMSLISRFISEQGKILSRRVNRLTLKQQRLITSAIKQARILSLLP 76 (103)
T ss_dssp -------------C--CSSCCSCHHHHTTTSCSSSSCCCSSSTTCCTTTTTTTHHHHHHHTTTTSSC
T ss_pred cccccCCCCCcCCC--CcCCcCCHHHHHHHhccCCCCcCccccCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 44557899999984 579999999999999999999999999999999999999999999887743
No 56
>3bbn_F Ribosomal protein S6; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.69 E-value=1.4e-17 Score=172.41 Aligned_cols=75 Identities=20% Similarity=0.406 Sum_probs=72.1
Q ss_pred CHHHHHHHHhcCCcEEEEEeeccccccccccCCcc---------eEEEEEEEEEeCcccHHHHHHHcCCCcceeeeeEee
Q psy2882 1 MIERYKKIIISGKGKIHRLEDWGRRSLAYQIKKVI---------KAHYICFNIEINKKTLLEIETSFRFNDAILRYLTIK 71 (1428)
Q Consensus 1 ~i~~~~~~i~~~gg~i~~~e~wG~r~LAY~I~k~~---------~G~Y~~~~f~~~~~~v~eler~lrl~e~VlR~l~vk 71 (1428)
+++++.++|+++||+|+++++||+|+|||+|+|++ +|+|++|+|+++|++|+||||.||+|++|||||+||
T Consensus 83 lver~~~iI~~~GG~I~~ve~WG~RrLAY~IkK~~kgg~~~~h~eG~Yvlm~F~a~p~~I~ELeR~Lride~VLR~liVK 162 (168)
T 3bbn_F 83 LTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAGETNNYLDGIYLLFTYFTKPESISPLEAALVTDDDVIRSSSFK 162 (168)
T ss_dssp TTHHHHHHHTTTSCEEEEEEEEEECCCSSCTTSCSSSCSSCCCCCCEEEEEEEEECTTSSHHHHHHHHTSSCCSEEECCB
T ss_pred HHHHHHHHHHHCCCEEEEEEecccccccceeccCcccccccccceEEEEEEEEEeCHHHHHHHHHHhcCCcCeeEEEEEe
Confidence 47899999999999999999999999999999988 799999999999999999999999999999999999
Q ss_pred ccCc
Q psy2882 72 TKKV 75 (1428)
Q Consensus 72 ~~~~ 75 (1428)
+++.
T Consensus 163 ~d~~ 166 (168)
T 3bbn_F 163 IRKR 166 (168)
T ss_dssp CCSC
T ss_pred cccc
Confidence 9864
No 57
>3r8n_R 30S ribosomal protein S18; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_R 3fih_R* 3iy8_R 3j18_R* 2wwl_R 3oar_R 3oaq_R 3ofb_R 3ofa_R 3ofp_R 3ofx_R 3ofy_R 3ofo_R 3r8o_R 4a2i_R 4gd1_R 4gd2_R
Probab=99.64 E-value=4e-17 Score=138.66 Aligned_cols=49 Identities=49% Similarity=0.760 Sum_probs=46.6
Q ss_pred ccccCCHHHHHhccccCCccccccccCcCHHHhhhHhhhcccccchhcc
Q psy2882 132 QIDYKDIETLKDFIQENGKIMAARLTGTCSHYQRQITFIRKNMQVILLK 180 (1428)
Q Consensus 132 ~~dyk~~~~l~~fi~~~gki~prr~tg~~~~~qr~~~~aik~~~vil~~ 180 (1428)
.|||||+++|++|||++|||+|||+||+|+|+||++++|||+||.+.+=
T Consensus 1 ~iDYknv~lL~~Fis~~GkIlprr~TGlc~k~QR~l~~AIKrAR~~~Ll 49 (55)
T 3r8n_R 1 EIDYKDIATLKNYITESGKIVPSRITGTRAKYQRQLARAIKRARYLSLL 49 (55)
T ss_dssp CCCTTCHHHHGGGBCTTCCBCCHHHHCCCHHHHHHHHHHHHHHHHTTSS
T ss_pred CCCccCHHHHHHHcCCCCCCcCccccccCHHHHHHHHHHHHHHHHhccC
Confidence 4899999999999999999999999999999999999999999998763
No 58
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=98.65 E-value=7.8e-09 Score=94.82 Aligned_cols=42 Identities=10% Similarity=0.263 Sum_probs=39.1
Q ss_pred cceEEEEEEEEEeCcccHHHHHHHcCCCcceeeeeEeeccCc
Q psy2882 34 VIKAHYICFNIEINKKTLLEIETSFRFNDAILRYLTIKTKKV 75 (1428)
Q Consensus 34 ~~~G~Y~~~~f~~~~~~v~eler~lrl~e~VlR~l~vk~~~~ 75 (1428)
+++|||++++|+++|++++||||.||+||+|||||++|.+++
T Consensus 2 k~~G~Yvl~~~~a~~~~i~Eler~~rine~VlR~l~vr~d~~ 43 (77)
T 3zzp_A 2 DPQGYTTWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTTP 43 (77)
T ss_dssp --CTTEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEEECSST
T ss_pred CceEEEEEEEEEeCHhHHHHHHHHhCCCHHHHHHHHHhccCC
Confidence 578999999999999999999999999999999999999976
No 59
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=98.35 E-value=6.1e-08 Score=92.42 Aligned_cols=40 Identities=10% Similarity=0.377 Sum_probs=39.1
Q ss_pred cceEEEEEEEEEeCcccHHHHHHHcCCCcceeeeeEeecc
Q psy2882 34 VIKAHYICFNIEINKKTLLEIETSFRFNDAILRYLTIKTK 73 (1428)
Q Consensus 34 ~~~G~Y~~~~f~~~~~~v~eler~lrl~e~VlR~l~vk~~ 73 (1428)
+++|||++++|+++|++++||||.+|+||+||||||++++
T Consensus 2 ~~~g~Y~~~~~~a~~~~v~eler~~r~~e~vlR~l~v~~e 41 (96)
T 2kjw_A 2 DPQGYFLWYQVEMPEDRVNDLARELRIRDNVRRVMVVAST 41 (96)
T ss_dssp TTSCCCEEECCCCCHHHHHHHHHHHHHCTTCSEEEEEECS
T ss_pred CceEEEEEEEeecChhHHHHHHHHhccchhhhhhhheehh
Confidence 5799999999999999999999999999999999999999
No 60
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=98.27 E-value=6.2e-06 Score=103.95 Aligned_cols=144 Identities=15% Similarity=0.149 Sum_probs=101.6
Q ss_pred eEEEEeeccccCccCCCcceeEEEEEEeCCceeeccceEEEEecCCCCCCChhhHhhcCCCHHHHhcCCCChHHHHHHHH
Q psy2882 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKITPQFCLNNGIPEYKFASIIE 391 (1428)
Q Consensus 312 ~~v~~D~ETTGldp~~DrIiqiaaIr~~~~~~~i~~~~~~~~~p~~~~~p~pea~~itGITpe~~~~~g~~e~e~~~~i~ 391 (1428)
.++++|+||||+++..++|++|++.. . ++ ..+|+.+.... + |+ ...++..+++..+.
T Consensus 27 ~~va~DtEttgl~~~~~~iv~I~~~~-~-~g------~~~yip~~~~~--------~-~~------~~~l~~~~vl~~L~ 83 (605)
T 2kfn_A 27 PVFAFDTETDSLDNISANLVGLSFAI-E-PG------VAAYIPVAHDY--------L-DA------PDQISRERALELLK 83 (605)
T ss_dssp SSEEEEEEESCSCTTTCCEEEEEEEE-E-TT------EEEEEECCCCS--------T-TC------CCCCCHHHHHHHHH
T ss_pred CeEEEEEecCCCCcccCceEEEEEEE-c-CC------cEEEEeccccc--------c-cc------ccccCHHHHHHHHH
Confidence 68999999999999999999998873 2 21 13455222110 1 11 12234567888899
Q ss_pred HHHcCCCceEEEEcchhhhHHHHHHHHHHccccchhhhhhcCCCCCchhhHHHHHHHhCCCCcCCCCCCCCCCCCChHhH
Q psy2882 392 KIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHL 471 (1428)
Q Consensus 392 ~~~~~~~~~~VGyN~i~FD~~flr~~f~Rn~~~~y~~~~~~g~sr~D~ld~~rl~~~l~p~~~~~p~~~~g~~s~kLe~L 471 (1428)
+++..++...|||| +.||..+|++ .++.. .. .++|++-++|.+.|. ..++.|++|
T Consensus 84 ~~L~d~~i~kV~hn-ak~D~~~L~~----~Gi~l-~~---------~~~DT~laayLL~p~----------~~~~~L~~L 138 (605)
T 2kfn_A 84 PLLEDEKALKVGQN-LKYDRGILAN----YGIEL-RG---------IAFDTMLESYILNSV----------AGRHDMDSL 138 (605)
T ss_dssp HHHTCTTSCEEESS-HHHHHHHHHT----TTCCC-CC---------EEEEHHHHHHHHCTT----------SSCCSHHHH
T ss_pred HHHcCCCCeEEEEC-cHHHHHHHHH----CCCCC-CC---------ccccHHHHHHHhCCC----------CCCCCHHHH
Confidence 99988777899998 7999999864 23221 11 137888889998763 447999999
Q ss_pred HHHc-CCCCC---------------C-------CCChHHHHHHHHHHHHHHHhhC
Q psy2882 472 SFVN-NLSHK---------------K-------AHDALSDVRATLGLARLIRNNN 503 (1428)
Q Consensus 472 ~~~~-gi~~~---------------~-------AHdAlaDv~AT~~l~~~l~~~~ 503 (1428)
++.| |+... . .|.|..||.+|.+|+..|.++-
T Consensus 139 a~~~Lg~~~i~~~~~~gKg~~~~~~~~~~le~~~~yAa~Da~~~~~L~~~L~~~L 193 (605)
T 2kfn_A 139 AERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDL 193 (605)
T ss_dssp HHHHSCCCCCCHHHHHCSSTTCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCcccHHHHhCCCcccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 87531 0 1458899999999999887653
No 61
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=98.04 E-value=3.9e-05 Score=87.24 Aligned_cols=177 Identities=14% Similarity=0.044 Sum_probs=124.0
Q ss_pred ceEEEEeeccccCccC-----CC----------------cceeEEEEEEeCCceee----ccceEEEEecCCCCCCChhh
Q psy2882 311 STFLWYDYETFGLNVR-----RD----------------RPFQFAAIRTDIMLNTI----DNPIMLYCKPAPDFLPDPRA 365 (1428)
Q Consensus 311 ~~~v~~D~ETTGldp~-----~D----------------rIiqiaaIr~~~~~~~i----~~~~~~~~~p~~~~~p~pea 365 (1428)
-+||.+|+|-||+..+ +| .|||+|.--.+.+++.- -..|+|+..+..+.. .+++
T Consensus 34 ~~fVAiDtEFpGvv~rp~~~~~~t~d~~Y~~lr~nvd~l~iIQlGLt~f~~~g~~p~~~~~wqFNF~f~~~~d~~-~~~S 112 (285)
T 4gmj_B 34 YNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMY-AQDS 112 (285)
T ss_dssp CCEEEEEEECCCCCCCCTTCCTTSTTHHHHHHHHHHTTSCCCEEEEEEECTTSCCCSSCCEEEEEBCCCTTTSCC-CHHH
T ss_pred CCEEEEEEEecCccCCCCCccCCCHHHHHHHHHHHHHhhcceeEEEEeeccCCCcCCCeeEEEEEEEeccccccc-cHHH
Confidence 3699999999998543 11 48999988888876532 233677777766654 5777
Q ss_pred Hhh---cCCCHHHHhcCCCChHHHHHHHHHHHc--CCCceEEEEcchhhhHHHHHHHHHHccccchhhhhhcCCCCCchh
Q psy2882 366 CLI---TKITPQFCLNNGIPEYKFASIIEKIFL--KPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKNNCSRWDLI 440 (1428)
Q Consensus 366 ~~i---tGITpe~~~~~g~~e~e~~~~i~~~~~--~~~~~~VGyN~i~FD~~flr~~f~Rn~~~~y~~~~~~g~sr~D~l 440 (1428)
+.. |||.-+.....|++..++.+.+..... .++..+|.||+ .+|..+|-..++..-+++- .-
T Consensus 113 I~fL~~~G~DF~k~~~~GI~~~~f~ell~~sglvl~~~v~WvtfH~-~yDf~yL~k~lt~~~LP~~------------~~ 179 (285)
T 4gmj_B 113 IELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHS-GYDFGYLIKILTNSNLPEE------------EL 179 (285)
T ss_dssp HHHHHHHTCCHHHHHHHCBCHHHHHHHHHTSSSSSCTTCEEEESSC-HHHHHHHHHHHHTSCCCSS------------HH
T ss_pred HHHHHHcCCCHHHHHHcCCCHHHHHHHHHHhHHHhcCCCceEEecc-hhhHHHHHHHHhCCCCCCC------------HH
Confidence 765 999999999999999887776654332 25577899996 5999999888875544431 12
Q ss_pred hHHHHHHHhCCCCcCCCC---CCCCCCCCChHhHHHHcCCCC-CCCCChHHHHHHHHHHHHHHHhh
Q psy2882 441 NVIKAFYVLSPYGITWPY---KNNGKPSFKLEHLSFVNNLSH-KKAHDALSDVRATLGLARLIRNN 502 (1428)
Q Consensus 441 d~~rl~~~l~p~~~~~p~---~~~g~~s~kLe~L~~~~gi~~-~~AHdAlaDv~AT~~l~~~l~~~ 502 (1428)
+...+.+.+.|..+.--. .-.+. +-.|++||+.+|++. ..+|.|-+|++.|..++.+|++.
T Consensus 180 eF~~~l~~~FP~vYD~K~l~~~~~~l-~ggL~~lA~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~ 244 (285)
T 4gmj_B 180 DFFEILRLFFPVIYDVKYLMKSCKNL-KGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREM 244 (285)
T ss_dssp HHHHHHHHHCSCEEEHHHHGGGSTTC-CSCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCchhhhHHHHHHhcccc-CChHHHHHHhCCCCCCCCCCcchhHHHHHHHHHHHHHHH
Confidence 333344455554332100 00111 236999999999984 55899999999999999999875
No 62
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=98.00 E-value=7.7e-06 Score=104.67 Aligned_cols=137 Identities=11% Similarity=0.003 Sum_probs=86.7
Q ss_pred EEEEeeccccCccCCCcceeEEEEEEeCCceeeccceEEEEecCCCCCCChhhHhhcCCCHHHHhcCCCChHHHHHHHHH
Q psy2882 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKITPQFCLNNGIPEYKFASIIEK 392 (1428)
Q Consensus 313 ~v~~D~ETTGldp~~DrIiqiaaIr~~~~~~~i~~~~~~~~~p~~~~~p~pea~~itGITpe~~~~~g~~e~e~~~~i~~ 392 (1428)
+|+||+||||+++..|+|.-|.....+. ++ .+.+. |. .+ .+.+..+.+
T Consensus 1 ~vv~D~ETtGl~~~~d~i~~iqi~~~~~-----~~--~~~~~--------p~----------~i-------~~~l~~L~~ 48 (698)
T 1x9m_A 1 MIVSDIEANALLESVTKFHCGVIYDYST-----AE--YVSYR--------PS----------DF-------GAYLDALEA 48 (698)
T ss_dssp CEEEEEEESSCGGGCCCEEEEEEEETTT-----TE--EEEEC--------GG----------GH-------HHHHHHHHH
T ss_pred CEEEEcCCCCcCCCCCEEEEEEEEecCC-----Cc--EEEEC--------hH----------HH-------HHHHHHHHH
Confidence 5899999999999999986665553211 11 12221 11 11 234566777
Q ss_pred HHcCCCceEEEEcchhhhHHHHHHHHHHc---cccchh-hhhhcCCCCCchhhHHHHHHHhCCCCcCCCCCCCCCCCCCh
Q psy2882 393 IFLKPGTISVGYNTILFDDEITRFMFWRN---LINPYE-REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKL 468 (1428)
Q Consensus 393 ~~~~~~~~~VGyN~i~FD~~flr~~f~Rn---~~~~y~-~~~~~g~sr~D~ld~~rl~~~l~p~~~~~p~~~~g~~s~kL 468 (1428)
++. ++...||||.+.||..+|...+.+. ++. .. .. ++|++-++|.+.|. ..++.|
T Consensus 49 ~l~-~~~~kV~HNa~kfD~~~L~~~~~~~~~~Gi~-l~~~~---------~~DTmlaayLL~p~----------~~~~~L 107 (698)
T 1x9m_A 49 EVA-RGGLIVFHNGHKYDVPALTKLAKLQLNREFH-LPREN---------CIDTLVLSRLIHSN----------LKDTDM 107 (698)
T ss_dssp HHH-TTCCEEESSTTTTHHHHHHHHHHHHHCCCCC-CCGGG---------EEEHHHHHHHHTTT----------SCCCTT
T ss_pred HHh-cCCeEEEcCChHHHHHHHHHhhhhcccCCcc-CCCCc---------chhHHHHHHHhCCC----------CCCCCH
Confidence 777 7778999993399999998765442 221 11 12 37888899998773 234666
Q ss_pred HhHHHHc--------CC-------C-----------CC---------------CCCChHHHHHHHHHHHHHHHhh
Q psy2882 469 EHLSFVN--------NL-------S-----------HK---------------KAHDALSDVRATLGLARLIRNN 502 (1428)
Q Consensus 469 e~L~~~~--------gi-------~-----------~~---------------~AHdAlaDv~AT~~l~~~l~~~ 502 (1428)
++|++.| |. + .. ..|.|..||.+|.+|+..|.++
T Consensus 108 ~~La~~~L~~sL~~~g~~lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~~~~~~~~~~YA~~Da~~t~~L~~~L~~~ 182 (698)
T 1x9m_A 108 GLLRSGKLPGALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKLLSD 182 (698)
T ss_dssp TTSCGGGSCSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGGTSCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcccchhhhcccccccccCHHHHhCcccccccccccccCCccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655 31 1 00 0356888888888888887654
No 63
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=97.92 E-value=1.4e-06 Score=83.07 Aligned_cols=33 Identities=27% Similarity=0.427 Sum_probs=31.3
Q ss_pred CHHHHHHHHhcCCcEEEEEeeccccccccccCC
Q psy2882 1 MIERYKKIIISGKGKIHRLEDWGRRSLAYQIKK 33 (1428)
Q Consensus 1 ~i~~~~~~i~~~gg~i~~~e~wG~r~LAY~I~k 33 (1428)
++++++++|+++||+|.++++||+|+|||||+|
T Consensus 64 ~ve~~~~iI~~~gG~i~~ve~WG~R~LAY~I~K 96 (96)
T 2kjw_A 64 EKEIIQRALENYGARVEKVEELGLRRLAYPIAK 96 (96)
T ss_dssp HHHHHHHHHHHHTCCCSCCEECCCCCCCCSCCC
T ss_pred HHHHHHHHHHhCCCEEEEEeccccccccccCCC
Confidence 378999999999999999999999999999987
No 64
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=97.85 E-value=3.4e-05 Score=82.62 Aligned_cols=151 Identities=16% Similarity=0.123 Sum_probs=84.3
Q ss_pred cCCceEEEEeeccccCccCCCcceeEEEEEEeCCceeeccceEEEEecCC--CCCCChhhH--hhcCCCHHHHhcCCCCh
Q psy2882 308 NGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAP--DFLPDPRAC--LITKITPQFCLNNGIPE 383 (1428)
Q Consensus 308 ~~~~~~v~~D~ETTGldp~~DrIiqiaaIr~~~~~~~i~~~~~~~~~p~~--~~~p~pea~--~itGITpe~~~~~g~~e 383 (1428)
++.++-+|||||+|| |....++|+||+|. .++. +||.--.. ..-+++-.. .+.++..... ....+.
T Consensus 19 p~~m~r~FlDTEFt~-d~~~~eLISIGlV~--EdGr------EFYav~~d~d~~~~~~wVr~~Vlp~L~~~~~-~~~~s~ 88 (190)
T 4hec_A 19 PGSMVRYFYDTEFIE-DGHTIELISIGVVA--EDGR------EYYAVSTEFDPERAGSWVRTHVLPKLPPPAS-QLWRSR 88 (190)
T ss_dssp --CEEEEEEEEEEEE-CSSCEEEEEEEEEE--TTSC------EEEEEETTSCGGGCCHHHHHHTGGGSCCTTS-TTEECH
T ss_pred CCceeEEEEeeeecC-CCCCCCEEEEEEEc--CCCC------EEEEEecCCChhhCcHHHHhccccCCCCCcc-cccCCH
Confidence 345788999999999 66678899999995 4442 24443221 111122221 2455552211 122366
Q ss_pred HHHHHHHHHHHcCCC---ceEEEEcchhhhHHHHHHHHHHccccchhhhhhcCCCCCchhhHHHHHHHhCCCCcCCCCCC
Q psy2882 384 YKFASIIEKIFLKPG---TISVGYNTILFDDEITRFMFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKN 460 (1428)
Q Consensus 384 ~e~~~~i~~~~~~~~---~~~VGyN~i~FD~~flr~~f~Rn~~~~y~~~~~~g~sr~D~ld~~rl~~~l~p~~~~~p~~~ 460 (1428)
.++..++.+++...+ ..+++|+ ..||..+|...+.+...-| .+..+|+ .+
T Consensus 89 ~~i~~~L~~FL~~~~~~~~eLwa~~-~~yD~~~L~ql~g~m~~lP------~~~p~~~-~d------------------- 141 (190)
T 4hec_A 89 QQIRLDLEEFLRIDGTDSIELWAWV-GAYDHVALCQLWGPMTALP------PTVPRFT-RE------------------- 141 (190)
T ss_dssp HHHHHHHHHHTTTTSSCEEEEEESS-CHHHHHHHHTTTSSGGGSC------TTSCSSC-EE-------------------
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEec-ccccHHHHHHHhcccccCC------cccchhh-HH-------------------
Confidence 899999999996522 3477766 6899988876543221101 1112221 12
Q ss_pred CCCCCCChHhHHHHcCC---C--CCCCCChHHHHHHHHHHHHHHHhh
Q psy2882 461 NGKPSFKLEHLSFVNNL---S--HKKAHDALSDVRATLGLARLIRNN 502 (1428)
Q Consensus 461 ~g~~s~kLe~L~~~~gi---~--~~~AHdAlaDv~AT~~l~~~l~~~ 502 (1428)
|..+....|. + ...+|+||.||++.++.++.+...
T Consensus 142 -------lr~~~~~~g~~~lp~~~~~~H~AL~DAR~n~~~~~~~~~~ 181 (190)
T 4hec_A 142 -------LRQLWEDRGCPRMPPRPRDVHDALVDARDQLRRFRLITST 181 (190)
T ss_dssp -------HHHHHHHTTCCCCCC-----CCHHHHHHHHHHHHHHHHC-
T ss_pred -------HHHHHHHcCCCCCCCCCCCCcCcHHHHHHHHHHHHHHhCc
Confidence 2222222222 1 245799999999999999888754
No 65
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=97.25 E-value=0.00075 Score=87.34 Aligned_cols=133 Identities=15% Similarity=0.088 Sum_probs=85.4
Q ss_pred CceEEEEeecccc---CccCCCcceeEEEEEEeCCceeeccceEEEEecCCCCCCChhhHhhcCCCHHHHhcCCCChHHH
Q psy2882 310 NSTFLWYDYETFG---LNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKITPQFCLNNGIPEYKF 386 (1428)
Q Consensus 310 ~~~~v~~D~ETTG---ldp~~DrIiqiaaIr~~~~~~~i~~~~~~~~~p~~~~~p~pea~~itGITpe~~~~~g~~e~e~ 386 (1428)
..+.++||+|||| .+|..|+|++||... .+.. + .+.|++- .. +.+ ....+|.++
T Consensus 134 ~l~ilsfDIEt~~~~~p~~~~d~Ii~Is~~~--~~~~---~--~~t~~~i----~~-----------~~v-~~~~~E~~L 190 (775)
T 1qht_A 134 ELTMLAFAIATLYHEGEEFGTGPILMISYAD--GSEA---R--VITWKKI----DL-----------PYV-DVVSTEKEM 190 (775)
T ss_dssp CCCEEEEEEEECCCTTCCTTCSCEEEEEEEC--SSCE---E--EEESSCC----CC-----------SSE-EECSCHHHH
T ss_pred CcEEEEEEEEEcCCCCCCCCCCcEEEEEEEe--cCCC---e--eEeeccc----cc-----------cce-EEcCCHHHH
Confidence 4589999999999 889999999999762 2211 1 1122211 00 012 123467888
Q ss_pred HHHHHHHHcC--CCceEEEEcchhhhHHHHHHHHHHccccch-hh-----hhh----------cCCCCCchhhHHHHHHH
Q psy2882 387 ASIIEKIFLK--PGTISVGYNTILFDDEITRFMFWRNLINPY-ER-----EWK----------NNCSRWDLINVIKAFYV 448 (1428)
Q Consensus 387 ~~~i~~~~~~--~~~~~VGyN~i~FD~~flr~~f~Rn~~~~y-~~-----~~~----------~g~sr~D~ld~~rl~~~ 448 (1428)
+..+.+++.+ | .++||||..+||..+|..-+.++.++.. .+ .|. .|...+|++++++ .
T Consensus 191 L~~f~~~i~~~dP-DiivGyN~~~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k---~ 266 (775)
T 1qht_A 191 IKRFLRVVREKDP-DVLITYNGDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIR---R 266 (775)
T ss_dssp HHHHHHHHHHHCC-SEEEESSTTTTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHH---H
T ss_pred HHHHHHHHHhcCC-CEEEEeCCCCccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHH---H
Confidence 9999888865 4 6899999999999999877766655432 11 011 1333345555554 3
Q ss_pred hCCCCcCCCCCCCCCCCCChHhHHH-HcCCCCC
Q psy2882 449 LSPYGITWPYKNNGKPSFKLEHLSF-VNNLSHK 480 (1428)
Q Consensus 449 l~p~~~~~p~~~~g~~s~kLe~L~~-~~gi~~~ 480 (1428)
.. ..+||+|+++|+ .+|....
T Consensus 267 ~~-----------~l~sysL~~Va~~~Lg~~K~ 288 (775)
T 1qht_A 267 TI-----------NLPTYTLEAVYEAVFGKPKE 288 (775)
T ss_dssp HS-----------CCSCCCHHHHHHHHHCCCCC
T ss_pred hc-----------CcCcCCHHHHHHHHhCCCCC
Confidence 21 356899999998 4787543
No 66
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=97.16 E-value=0.0009 Score=87.29 Aligned_cols=165 Identities=15% Similarity=0.042 Sum_probs=95.2
Q ss_pred ceEEEEeecc-ccC-----ccC--CCcceeEEEEEEeCCceeeccceEEEEecCCCCCCChhhHhhcCCCHHHHhcCCCC
Q psy2882 311 STFLWYDYET-FGL-----NVR--RDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKITPQFCLNNGIP 382 (1428)
Q Consensus 311 ~~~v~~D~ET-TGl-----dp~--~DrIiqiaaIr~~~~~~~i~~~~~~~~~p~~~~~p~pea~~itGITpe~~~~~g~~ 382 (1428)
-.+++||+|| ||. +|. .|.|++||.+ +.++. + -.+.+.+.. .+ .+...+.|.. +. .--+
T Consensus 190 l~ilsfDIEt~s~~~g~fP~~~~~~d~Ii~Is~~--~~~g~---~-~~~~~~~~~--~~-~~~~~i~~~~---v~-~~~~ 256 (847)
T 1s5j_A 190 IKRVAIDIEVYTPVKGRIPDSQKAEFPIISIALA--GSDGL---K-KVLVLNRND--VN-EGSVKLDGIS---VE-RFNT 256 (847)
T ss_dssp CCEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEE--ETTSC---E-EEEEECSSC--CC-CCCEEETTEE---EE-EESS
T ss_pred ceEEEEEEEeCcCCCCCCCCccccCCcEEEEEEE--ccCCC---c-EEEEEeCCc--cc-ccccCCCCCe---EE-EeCC
Confidence 3789999999 853 444 3899999986 33321 1 234444321 11 1111122211 11 1126
Q ss_pred hHHHHHHHHHHHcCCCceEEEEcchhhhHHHHHHHHHHccccchhhhhh---------cCCCCCchhhHHHH--HHHhCC
Q psy2882 383 EYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK---------NNCSRWDLINVIKA--FYVLSP 451 (1428)
Q Consensus 383 e~e~~~~i~~~~~~~~~~~VGyN~i~FD~~flr~~f~Rn~~~~y~~~~~---------~g~sr~D~ld~~rl--~~~l~p 451 (1428)
|.+++..+.+++.+. .+++|||..+||..+|..-+.++.++.....|. .|...+|+...++. ...+..
T Consensus 257 E~~LL~~f~~~i~~~-diivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~~y~f 335 (847)
T 1s5j_A 257 EYELLGRFFDILLEY-PIVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAF 335 (847)
T ss_dssp HHHHHHHHHHHHTTC-SEEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTS
T ss_pred HHHHHHHHHHHhccC-CEEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhhhhcc
Confidence 889999999999876 489999999999999988777777653222221 12223455544321 001111
Q ss_pred CCcCCCCCCCCCCCCChHhHHHH-cCCCCCCCCC-------------hHHHHHHHHHHHH
Q psy2882 452 YGITWPYKNNGKPSFKLEHLSFV-NNLSHKKAHD-------------ALSDVRATLGLAR 497 (1428)
Q Consensus 452 ~~~~~p~~~~g~~s~kLe~L~~~-~gi~~~~AHd-------------AlaDv~AT~~l~~ 497 (1428)
.....||+|+++|++ +|.....-+. .+.||..|..|+.
T Consensus 336 --------~~kl~sysL~~Va~~~Lg~~K~dv~~~i~~~~~~~l~~Ycl~Da~lt~~L~~ 387 (847)
T 1s5j_A 336 --------EGKYNEYNLDAVAKALLGTSKVKVDTLISFLDVEKLIEYNFRDAEITLQLTT 387 (847)
T ss_dssp --------TTCCSSCSHHHHHHHHHCCCCC--SSCTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred --------ccccccccHHHHHHHHhCCCCcchhHhhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 112468999999994 5654322221 3558888887753
No 67
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=97.02 E-value=0.0021 Score=76.60 Aligned_cols=171 Identities=12% Similarity=0.006 Sum_probs=92.7
Q ss_pred ceEEEEeecccc--C-ccC--CCcceeEEEEEEeCCceeeccceEEEEec---CCCCCCC-h-hhHhhc--CCCH--HH-
Q psy2882 311 STFLWYDYETFG--L-NVR--RDRPFQFAAIRTDIMLNTIDNPIMLYCKP---APDFLPD-P-RACLIT--KITP--QF- 375 (1428)
Q Consensus 311 ~~~v~~D~ETTG--l-dp~--~DrIiqiaaIr~~~~~~~i~~~~~~~~~p---~~~~~p~-p-ea~~it--GITp--e~- 375 (1428)
-..+.||+||+| . +|. .|.|++|+.+-.. +. + +..+|.. .....|. . .+..++ .+++ +.
T Consensus 106 l~vlsfDIEt~~~~fP~~~~~~d~Ii~Is~~~~~-~~----~-~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 179 (388)
T 1noy_A 106 VRVANCDIEVTGDKFPDPMKAEYEIDAITHYDSI-DD----R-FYVFDLLNSMYGSVSKWDAKLAAKLDCEGGDEVPQEI 179 (388)
T ss_dssp CCEEEEEEEECCSSCCCTTTCCSCEEEEEEEETT-TT----E-EEEEEECCCSSCCCCCCCHHHHHSCGGGTCCCCCHHH
T ss_pred eEEEEEEEEeCCCCCCCCCCCCCeEEEEEEEEec-CC----e-EEEEEEeeccCCCCCcccccccccccccccccccccc
Confidence 578999999998 1 233 5699999986332 21 1 2233322 1111121 0 111111 1111 10
Q ss_pred ---Hh-cCCCChHHHHHHHHHHHcC-CCceEEEEcchhhhHHHHHHHHHH-ccc---cc---hh--------hhhh----
Q psy2882 376 ---CL-NNGIPEYKFASIIEKIFLK-PGTISVGYNTILFDDEITRFMFWR-NLI---NP---YE--------REWK---- 431 (1428)
Q Consensus 376 ---~~-~~g~~e~e~~~~i~~~~~~-~~~~~VGyN~i~FD~~flr~~f~R-n~~---~~---y~--------~~~~---- 431 (1428)
+. ....+|.+++..+.+++.+ .-.+++|||..+||..+|..-..+ +.. +. +. ..|.
T Consensus 180 ~~~v~v~~~~~E~~LL~~f~~~i~~~dPDii~GyN~~~FDlpyL~~Ra~~~lg~~l~~~~s~~~r~~~~~~~~~~g~~~~ 259 (388)
T 1noy_A 180 LDRVIYMPFDNERDMLMEYINLWEQKRPAIFTGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGSKEI 259 (388)
T ss_dssp HTTEEEEEESCHHHHHHHHHHHHHHSCCSEEECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGCSCEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHHhCCcEEEecCCCCccHHHHHHHHHHHcCCccccccCcccccccccChhhhCCcce
Confidence 00 1234688999999999955 227899999999999998644433 221 11 11 1111
Q ss_pred ---cCCCCCchhhHHHHHHHhCCCCcCCCCCCCCCCCCChHhHHH-HcCCCCCCCCC----------------hHHHHHH
Q psy2882 432 ---NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSF-VNNLSHKKAHD----------------ALSDVRA 491 (1428)
Q Consensus 432 ---~g~sr~D~ld~~rl~~~l~p~~~~~p~~~~g~~s~kLe~L~~-~~gi~~~~AHd----------------AlaDv~A 491 (1428)
.|...+|++ .+++.+. + .+..||+|+++|. .+|.....-+. .+.||..
T Consensus 260 ~~i~GR~~lD~~---~~~k~~~-----~----~~l~sysL~~Va~~~Lg~~K~d~~~~i~~~~~~~~~~l~~Y~~~D~~l 327 (388)
T 1noy_A 260 YSIDGVSILDYL---DLYKKFA-----F----TNLPSFSLESVAQHETKKGKLPYDGPINKLRETNHQRYISYNIIDVES 327 (388)
T ss_dssp EEETTSEECCHH---HHHHHHT-----C----CCCSCCSHHHHHHHHHSCCCCCCSSCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCeEEeEHH---HHHhhcC-----c----CcccCCCHHHHHHHHhCCCCCCcHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 111133444 4444431 1 0267899999998 56665433223 3668888
Q ss_pred HHHHHHHH
Q psy2882 492 TLGLARLI 499 (1428)
Q Consensus 492 T~~l~~~l 499 (1428)
|.+|+.++
T Consensus 328 ~~~L~~kl 335 (388)
T 1noy_A 328 VQAIDKIR 335 (388)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777764
No 68
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=97.00 E-value=0.0061 Score=68.11 Aligned_cols=178 Identities=13% Similarity=0.033 Sum_probs=119.9
Q ss_pred ceEEEEeeccccCccCC---------------------CcceeEEEEEEeCCcee----eccceEEEEecCCCCCCChhh
Q psy2882 311 STFLWYDYETFGLNVRR---------------------DRPFQFAAIRTDIMLNT----IDNPIMLYCKPAPDFLPDPRA 365 (1428)
Q Consensus 311 ~~~v~~D~ETTGldp~~---------------------DrIiqiaaIr~~~~~~~----i~~~~~~~~~p~~~~~p~pea 365 (1428)
-+||.+|+|-+|+..+- =.|||+|.--.+.+++. ...+|+++.....+. -.+++
T Consensus 24 ~~fvAmDtEFpGvv~rp~g~f~~~~~~~Y~~lr~nVd~l~iIQlGlt~~~~~g~~p~~~~~wqFNF~F~~~~d~-~~~~S 102 (252)
T 2d5r_A 24 YNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDM-YAQDS 102 (252)
T ss_dssp CCEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEEEEEEECTTSCCCSSCCEEEEEBCCCTTTSC-CCHHH
T ss_pred CCEEEEEeeecceecccCCCCCCCHHHHHHHHHHhhhhcceeEEEEEEEccCCCCCCCceeEEEEEEECCcccc-cCHHH
Confidence 37999999999996431 23799998888887764 234467774444443 35676
Q ss_pred Hh---hcCCCHHHHhcCCCChHHHHHHHHHH--HcCCCceEEEEcchhhhHHHHHHHHHHccccchhhhhhcCCCCCchh
Q psy2882 366 CL---ITKITPQFCLNNGIPEYKFASIIEKI--FLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKNNCSRWDLI 440 (1428)
Q Consensus 366 ~~---itGITpe~~~~~g~~e~e~~~~i~~~--~~~~~~~~VGyN~i~FD~~flr~~f~Rn~~~~y~~~~~~g~sr~D~l 440 (1428)
+. -+||.-+.....|++..+|.+.+... ...++..+|.||+ .+|..+|=..+...-++. +.-
T Consensus 103 i~fL~~~G~DF~k~~~~GI~~~~F~ell~~sglvl~~~v~Witfhg-~yDf~yL~k~L~~~~LP~------------~~~ 169 (252)
T 2d5r_A 103 IELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHS-GYDFGYLIKILTNSNLPE------------EEL 169 (252)
T ss_dssp HHHHHHHTCCHHHHHHHCBCHHHHHHHHHTTTSSSSSSCEEEESSC-HHHHHHHHHHHHTSCCCS------------SHH
T ss_pred HHHHHHcCCChhHHHhcCCCHHHHHHHHHhcCcccCCCceEEEecC-cchHHHHHHHhcCCCCCC------------CHH
Confidence 64 48999999999999998877766552 2234567899995 799999877776433332 112
Q ss_pred hHHHHHHHhCCCCcCCCC---CCCCCCCCChHhHHHHcCCCC-CCCCChHHHHHHHHHHHHHHHhhC
Q psy2882 441 NVIKAFYVLSPYGITWPY---KNNGKPSFKLEHLSFVNNLSH-KKAHDALSDVRATLGLARLIRNNN 503 (1428)
Q Consensus 441 d~~rl~~~l~p~~~~~p~---~~~g~~s~kLe~L~~~~gi~~-~~AHdAlaDv~AT~~l~~~l~~~~ 503 (1428)
+...+.+.+.|..+.--. .-.+. .-.|+.|++.+|++. ..+|.|-+|++.|..++.+|++..
T Consensus 170 ~F~~~l~~~FP~iyD~K~l~~~~~~l-~~gL~~la~~L~v~r~g~~HqAGsDsllT~~~F~km~~~~ 235 (252)
T 2d5r_A 170 DFFEILRLFFPVIYDVKYLMKSCKNL-KGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMF 235 (252)
T ss_dssp HHHHHHHHHCSCEEEHHHHGGGCTTC-CSSHHHHHHHHTCCCCSSTTSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCcchhhHHHHHHHhccc-CCCHHHHHHHcCCCccCcccchhhhHHHHHHHHHHHHHHh
Confidence 333444445553222000 00011 235999999999865 557999999999999999998763
No 69
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=96.96 E-value=0.0096 Score=68.57 Aligned_cols=177 Identities=16% Similarity=0.091 Sum_probs=120.3
Q ss_pred ceEEEEeeccccCccCC----C-----------------cceeEEEEEEeCCcee----eccceEEEEecCCCCCCChhh
Q psy2882 311 STFLWYDYETFGLNVRR----D-----------------RPFQFAAIRTDIMLNT----IDNPIMLYCKPAPDFLPDPRA 365 (1428)
Q Consensus 311 ~~~v~~D~ETTGldp~~----D-----------------rIiqiaaIr~~~~~~~----i~~~~~~~~~p~~~~~p~pea 365 (1428)
-+||.+|+|-+|+..+- + .|||+|.--.|.+++. ....|+|+.....+. -.+++
T Consensus 45 ~~fVAmDtEFpGvv~rp~g~f~~~~e~~Yq~lR~NVd~l~iIQlGLt~fd~~G~~p~~~~twqFNF~F~~~~d~-~~~~S 123 (333)
T 2p51_A 45 YPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPVEACTWQFNFTFNLQDDM-YAPES 123 (333)
T ss_dssp SCEEEEEEECCCCCCCCCSCCSSSHHHHHHHHHHHHHHSCCCEEEEEEECTTSCCCTTCSEEEEEBCCCTTTSC-CCHHH
T ss_pred CCEEEEeeeccccccccccccCCCHHHHHHHHHHhhhhccceEEEEEEEccCCCCCCCceeEEEEEEECCcccc-cCHHH
Confidence 47999999999996431 1 3799998888887764 334477774444443 35666
Q ss_pred Hh---hcCCCHHHHhcCCCChHHHHHHHHH--HHcCCCceEEEEcchhhhHHHHHHHHHHccccchhhhhhcCCCCCchh
Q psy2882 366 CL---ITKITPQFCLNNGIPEYKFASIIEK--IFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKNNCSRWDLI 440 (1428)
Q Consensus 366 ~~---itGITpe~~~~~g~~e~e~~~~i~~--~~~~~~~~~VGyN~i~FD~~flr~~f~Rn~~~~y~~~~~~g~sr~D~l 440 (1428)
+. -+||.-+.....|++..+|.+.+.. ....++..+|.+|+ .+|..+|=..+...-++. +.-
T Consensus 124 I~fL~~~G~DF~k~~~~GI~~~~F~elL~~SGLvl~~~V~Witfhg-~YDfgyLlK~Lt~~~LP~------------~~~ 190 (333)
T 2p51_A 124 IELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHS-GYDFAYLLKAMTQIPLPA------------EYE 190 (333)
T ss_dssp HHHHHHTTCCHHHHHHHCBCHHHHHHHHHTTTSSSCTTCEEEESSC-HHHHHHHHHHHHCSCCCS------------SHH
T ss_pred HHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCcccCCCceEEEecc-chhHHHHHHHhcCCCCCC------------CHH
Confidence 64 3799999999999999887776664 22224467899995 799998877766322221 223
Q ss_pred hHHHHHHHhCCCCcCCCC---CCCCCCCCChHhHHHHcCCCC-CCCCChHHHHHHHHHHHHHHHhh
Q psy2882 441 NVIKAFYVLSPYGITWPY---KNNGKPSFKLEHLSFVNNLSH-KKAHDALSDVRATLGLARLIRNN 502 (1428)
Q Consensus 441 d~~rl~~~l~p~~~~~p~---~~~g~~s~kLe~L~~~~gi~~-~~AHdAlaDv~AT~~l~~~l~~~ 502 (1428)
+...+.+.+.|..+.--. .-.+. .=.|+.|++.+|++. ..+|.|-+|++.|..++.+|++.
T Consensus 191 eF~~~l~~~FP~iYD~K~l~~~~~~l-~ggL~~lA~~L~v~Rig~~HqAGsDSlLT~~~F~kl~~~ 255 (333)
T 2p51_A 191 EFYKILCIYFPKNYDIKYIMKSVLNN-SKGLQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSR 255 (333)
T ss_dssp HHHHHHHHHSSSEEEHHHHHTTTTCC-CCCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcchhhHHHHHHHhccc-cCCHHHHHHHcCCCccCcchhhhhHHHHHHHHHHHHHHH
Confidence 344444455553322100 00011 136999999999864 55899999999999999999864
No 70
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=96.79 E-value=0.0087 Score=78.57 Aligned_cols=98 Identities=20% Similarity=0.184 Sum_probs=63.5
Q ss_pred eEEEEeecccc---C--ccCCCcceeEEEEEEeCCc-eeeccceEEEEecCCCCCCChhhHhhcCCCHHHHhcCCCChHH
Q psy2882 312 TFLWYDYETFG---L--NVRRDRPFQFAAIRTDIML-NTIDNPIMLYCKPAPDFLPDPRACLITKITPQFCLNNGIPEYK 385 (1428)
Q Consensus 312 ~~v~~D~ETTG---l--dp~~DrIiqiaaIr~~~~~-~~i~~~~~~~~~p~~~~~p~pea~~itGITpe~~~~~g~~e~e 385 (1428)
+.+.||+||++ . +|..|.|+|||.+....+. ....+ ..++..... + +.|.. + ..--+|.+
T Consensus 250 rilSfDIEt~~~~g~fP~~~~D~Ii~IS~~v~~~g~~~~~~r--~~f~l~~~~--~------~~~~~---V-~~~~sE~e 315 (919)
T 3iay_A 250 RIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAKKPFIR--NVFTLNTCS--P------ITGSM---I-FSHATEEE 315 (919)
T ss_dssp EEEEEEEEECCCTTSCCCTTTCCEEEEEEEEEETTCSSCSEE--EEEEESCCC--C------BTTBE---E-EEESSHHH
T ss_pred eEEEEEEEECCCCCCCCCCCCCcEEEEEEEEecCCCccccee--EEEEecCCC--C------CCCCe---E-EECCCHHH
Confidence 68999999985 2 5678999999987543321 11111 233322111 1 11221 1 11226889
Q ss_pred HHHHHHHHHcC--CCceEEEEcchhhhHHHHHHHHHHcccc
Q psy2882 386 FASIIEKIFLK--PGTISVGYNTILFDDEITRFMFWRNLIN 424 (1428)
Q Consensus 386 ~~~~i~~~~~~--~~~~~VGyN~i~FD~~flr~~f~Rn~~~ 424 (1428)
++..+..++.. | .+++|||...||..+|..-+.++.++
T Consensus 316 LL~~F~~~i~~~DP-DIIvGyNi~~FDlpyL~~Ra~~lgi~ 355 (919)
T 3iay_A 316 MLSNWRNFIIKVDP-DVIIGYNTTNFDIPYLLNRAKALKVN 355 (919)
T ss_dssp HHHHHHHHHHHHCC-SEEEESSTTTTHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhCC-CEEEecCCccCCHHHHHHHHHHcCCC
Confidence 99999999966 5 68999999999999997766666554
No 71
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=96.79 E-value=0.005 Score=69.94 Aligned_cols=187 Identities=12% Similarity=0.076 Sum_probs=117.6
Q ss_pred ceEEEEeeccccCccC---------------------CCcceeEEEEEEeCCcee-----eccceEEEEecCCCCCCChh
Q psy2882 311 STFLWYDYETFGLNVR---------------------RDRPFQFAAIRTDIMLNT-----IDNPIMLYCKPAPDFLPDPR 364 (1428)
Q Consensus 311 ~~~v~~D~ETTGldp~---------------------~DrIiqiaaIr~~~~~~~-----i~~~~~~~~~p~~~~~p~pe 364 (1428)
-+||.+|+|-+|+..+ .=.|||+|.--.+.+++. ...+|+|+.....+ .-.++
T Consensus 38 ~~fVAmDtEFpGvv~rp~g~f~~~~d~~Yq~lr~nVd~l~iIQlGLt~~~~~g~~p~~~~~~wqFNF~F~~~~d-~~~~~ 116 (289)
T 1uoc_A 38 YNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSDANGNKPDNGPSTWQFNFEFDPKKE-IMSTE 116 (289)
T ss_dssp SCEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEEEEEECTTCCCCSSSCSEEEEEBCCCTTCC-CCCHH
T ss_pred CCEEEEEeeecceeccCCcccCCCHHHHHHHHHHhhhhccceEEEEEEEccCCCcCCCCcceEEEEEEECCccc-cccHH
Confidence 4799999999999532 113699998888887764 23447777444443 33566
Q ss_pred hHh---hcCCCHHHHhcCCCChHHHHHHHHHH--HcCCCceEEEEcchhhhHHHHHHHHHHccccchh-------hhhhc
Q psy2882 365 ACL---ITKITPQFCLNNGIPEYKFASIIEKI--FLKPGTISVGYNTILFDDEITRFMFWRNLINPYE-------REWKN 432 (1428)
Q Consensus 365 a~~---itGITpe~~~~~g~~e~e~~~~i~~~--~~~~~~~~VGyN~i~FD~~flr~~f~Rn~~~~y~-------~~~~~ 432 (1428)
++. -+||.-+.....|++..+|.+.+... ...++..+|.+|+ .||..+|=..+...-++.-. +.+-
T Consensus 117 SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~sgLvl~~~v~Witfhg-~yDfgyL~k~Lt~~~LP~~~~~F~~~l~~~F- 194 (289)
T 1uoc_A 117 SLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHA-AYDLGFLINILMNDSMPNNKEDFEWWVHQYM- 194 (289)
T ss_dssp HHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTSSCSSCTTSEEEESST-THHHHHHHHHHTTSCCCSSHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCCccCCCceEEEccC-cchHHHHHHHhccccCCcCHHHHHHHHHHhC-
Confidence 664 48999999999999998777665542 2224568999995 79999987777643333211 1111
Q ss_pred CCCCCchhhHHHHHHHhCCCCcCCCC-CCCCCCCCChHhHHHHcCCCC-CCCCChHHHHHHHHHHHHHHHhh
Q psy2882 433 NCSRWDLINVIKAFYVLSPYGITWPY-KNNGKPSFKLEHLSFVNNLSH-KKAHDALSDVRATLGLARLIRNN 502 (1428)
Q Consensus 433 g~sr~D~ld~~rl~~~l~p~~~~~p~-~~~g~~s~kLe~L~~~~gi~~-~~AHdAlaDv~AT~~l~~~l~~~ 502 (1428)
..-+|+--+++.+..+....+. |. ...-.....|++||+.+|++. ..+|.|=+|+..|..++.+|++.
T Consensus 195 -P~iyD~K~l~~~~~~l~~~~~~-~~~~~~~~~~~~L~~lA~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~ 264 (289)
T 1uoc_A 195 -PNFYDLNLVYKIIQEFKNPQLQ-QSSQQQQQQQYSLTTLADELGLPRFSIFTTTGGQSLLMLLSFCQLSKL 264 (289)
T ss_dssp -SSEEEHHHHHHHHTTTCC--------------CCSHHHHHHHTTCCCCGGGGSHHHHHHHHHHHHHHHHHH
T ss_pred -ccceeHHHHHHHHHhccCcccc-cccccccccCCCHHHHHHHcCCCccCcccccHHHHHHHHHHHHHHHHH
Confidence 1233444444444332210000 00 000112468999999999974 44799999999999999999865
No 72
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=96.75 E-value=8.6e-05 Score=71.34 Aligned_cols=52 Identities=13% Similarity=0.112 Sum_probs=48.3
Q ss_pred HhcCCCcch--hhhhhccccccccCcceeecccccccccccchhhhhhcCCCcc
Q psy2882 1251 KLLGVNPLI--IGIAFGNTLIKHAKPLKIIHSITNKAKFNEISKLVEKWKPNTV 1302 (1428)
Q Consensus 1251 ~~~~~d~~~--i~~~~G~~~~~~a~p~~~~~~~~~~~~~~~~~~~~~~~~p~~v 1302 (1428)
+.||+|||+ ||.|+++....+|+|+.+|++....++|++|..++++|+|+.+
T Consensus 2 riLglD~G~kriGvAvsd~~~~~A~pl~ti~~~~~~~~~~~l~~li~e~~v~~i 55 (98)
T 1iv0_A 2 RVGALDVGEARIGLAVGEEGVPLASGRGYLVRKTLEEDVEALLDFVRREGLGKL 55 (98)
T ss_dssp CEEEEEESSSEEEEEEECSCCSSCCCEEEEECCCHHHHHHHHHHHHHHHTCCEE
T ss_pred cEEEEEeCCCEEEEEEEeCCCCeeeeeEEEEccCcHHHHHHHHHHHHHcCCCEE
Confidence 458999987 9999999999999999999977778999999999999999877
No 73
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=96.55 E-value=0.00023 Score=72.56 Aligned_cols=51 Identities=27% Similarity=0.612 Sum_probs=48.3
Q ss_pred hcCCCcch--hhhhhccccccccCcceeecccccccccccchhhhhhcCCCcc
Q psy2882 1252 LLGVNPLI--IGIAFGNTLIKHAKPLKIIHSITNKAKFNEISKLVEKWKPNTV 1302 (1428)
Q Consensus 1252 ~~~~d~~~--i~~~~G~~~~~~a~p~~~~~~~~~~~~~~~~~~~~~~~~p~~v 1302 (1428)
.||+|||+ ||.|+++..+.+|+|+++|++..+.++|..|..++++|+|+.+
T Consensus 5 iLglD~G~kriGvAvsd~~~~~A~pl~ti~~~~~~~~~~~l~~li~e~~v~~i 57 (138)
T 1nu0_A 5 LMAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEI 57 (138)
T ss_dssp EEEEECCSSEEEEEEEETTTTEEEEEEEEEEETTEECHHHHHHHHHHHCCSEE
T ss_pred EEEEEeCCCEEEEEEEcCCCCEEeeEEEEEcCCcchHHHHHHHHHHHcCCCEE
Confidence 58999987 9999999999999999999998888999999999999999887
No 74
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=95.85 E-value=0.035 Score=74.59 Aligned_cols=101 Identities=16% Similarity=0.234 Sum_probs=59.6
Q ss_pred ceEEEEeeccccC--c------c--CCCcceeEEEEEEeCCceeeccceEEEEecCCCCCCChhhH----hhcCCCHHHH
Q psy2882 311 STFLWYDYETFGL--N------V--RRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRAC----LITKITPQFC 376 (1428)
Q Consensus 311 ~~~v~~D~ETTGl--d------p--~~DrIiqiaaIr~~~~~~~i~~~~~~~~~p~~~~~p~pea~----~itGITpe~~ 376 (1428)
-..+.||+||++. + | ..|.|+||+.+....+...... ..++. +.. .. .|+.. .-.++....+
T Consensus 320 lrvlsfDIE~~~~g~~~~~FP~a~~~~D~Ii~IS~~~~~~~~~~~~~-~~v~~-l~~-~~-~~~~f~~~~k~~~~~~~~V 395 (1193)
T 2gv9_A 320 YKLMCFDIECKAGGEDELAFPVAGHPEDLVIQISCLLYDLSTTALEH-VLLFS-LGS-CD-LPESHLNELAARGLPTPVV 395 (1193)
T ss_dssp CEEEEEEEEEECCSSCTTSCCCTTSTTSEEEEEEEEEEETTTCCEEE-EEEEE-ESC-CC-CCHHHHHHHHHTTCCCCEE
T ss_pred ceEEEEEEEEcccCCCCCCCCCccccCCceEEEEEEEEeccCCCcce-EEEEE-CCC-cC-CcchhhhhcccccCCCceE
Confidence 3699999999964 2 2 3699999998765432221111 12222 221 11 11211 1111110011
Q ss_pred hcCCCChHHHHHHHHHHHcC--CCceEEEEcchhhhHHHHHHH
Q psy2882 377 LNNGIPEYKFASIIEKIFLK--PGTISVGYNTILFDDEITRFM 417 (1428)
Q Consensus 377 ~~~g~~e~e~~~~i~~~~~~--~~~~~VGyN~i~FD~~flr~~ 417 (1428)
. .-.+|.+++..+..++.+ | .+++|||...||..+|..-
T Consensus 396 ~-~~~sE~eLL~~F~~~I~~~DP-DIIvGyNi~~FDlpyL~~R 436 (1193)
T 2gv9_A 396 L-EFDSEFEMLLAFMTLVKQYGP-EFVTGYNIINFDWPFLLAK 436 (1193)
T ss_dssp E-EESSHHHHHHHHHHHHHHHCC-SEEEESSTTTTHHHHHHHH
T ss_pred E-ecCCHHHHHHHHHHHHHhcCC-CEEEEcCCcCccHHHHHHH
Confidence 1 123688999999999976 4 7899999999999998643
No 75
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=95.64 E-value=0.047 Score=67.18 Aligned_cols=91 Identities=19% Similarity=0.094 Sum_probs=55.8
Q ss_pred CceEEEEcchhhhHHHHHHHHHHccccchhhhhhcCCCCCchhhHHHHHHHhCCCCcCCCC---C-C--CCCCCCChHhH
Q psy2882 398 GTISVGYNTILFDDEITRFMFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPY---K-N--NGKPSFKLEHL 471 (1428)
Q Consensus 398 ~~~~VGyN~i~FD~~flr~~f~Rn~~~~y~~~~~~g~sr~D~ld~~rl~~~l~p~~~~~p~---~-~--~g~~s~kLe~L 471 (1428)
+..+|||| .-+|.-++-..|+. |+...+ -+.....+.+.|..+..-. . + .-.++-.|+.|
T Consensus 276 ~kpiVgHN-~l~Dl~~l~~~F~~----pLP~~~---------~eFk~~i~~lFP~i~DTK~la~~~~~~~~~~~~~L~~l 341 (507)
T 3d45_A 276 GKLVVGHN-MLLDVMHTIHQFYC----PLPADL---------NEFKEMAICVFPRLLDTKLMASTQPFKDIINNTSLAEL 341 (507)
T ss_dssp CCEEEESS-CHHHHHHHHHHHTC----SCCSSH---------HHHHHHHHHHCSCEEEHHHHTTSTTHHHHCCCCCHHHH
T ss_pred CCeEEEec-hHHHHHHHHHHhcC----CCCCCH---------HHHHHHHHHhCCceeEhHhhhhcCccccccCCCCHHHH
Confidence 46799999 46998887666653 322221 3444455555554332100 0 0 01235688898
Q ss_pred HHHcC-----CC--------------CCCCCChHHHHHHHHHHHHHHHhh
Q psy2882 472 SFVNN-----LS--------------HKKAHDALSDVRATLGLARLIRNN 502 (1428)
Q Consensus 472 ~~~~g-----i~--------------~~~AHdAlaDv~AT~~l~~~l~~~ 502 (1428)
.+.+. .+ ...+|.|=.|++.|..++-+|...
T Consensus 342 ~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~~~ 391 (507)
T 3d45_A 342 EKRLKETPFDPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANY 391 (507)
T ss_dssp HHHTTSTTCCCCCEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCCeEEecccccccccCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 88875 22 234799999999999999888754
No 76
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=95.34 E-value=0.015 Score=72.13 Aligned_cols=119 Identities=8% Similarity=-0.084 Sum_probs=82.6
Q ss_pred ceEEEEeeccccCccCCCcceeEEEEEEeCCceeeccceEEEEecCCCCCCChhhHhhcCCCHHHHhcCCCChHHHHHHH
Q psy2882 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKITPQFCLNNGIPEYKFASII 390 (1428)
Q Consensus 311 ~~~v~~D~ETTGldp~~DrIiqiaaIr~~~~~~~i~~~~~~~~~p~~~~~p~pea~~itGITpe~~~~~g~~e~e~~~~i 390 (1428)
+.++.+||||+|+++..++++-|+.- . .+ + .+++ + +.+..+
T Consensus 10 p~~valDtE~~~~~~~~a~Lvgi~la-~-~~-----~--a~~i-------~-----------------------~~l~~l 50 (540)
T 4dfk_A 10 PEGAFVGFVLSRKEPMWADLLALAAA-R-GG-----R--VHRA-------P-----------------------EPYKAL 50 (540)
T ss_dssp CTTCEEEEEESSSCTTTCCEEEEEEE-E-TT-----E--EEEC-------S-----------------------SHHHHH
T ss_pred CCceEEEEEecCCccCcccEEEEEEE-c-CC-----E--EEEe-------h-----------------------hhHHHH
Confidence 45799999999999999998765443 2 11 1 1211 0 123344
Q ss_pred HHHHcCCCceEEEEcchhhhHHHHHHHHHHccccchhhhhhcCCCCCchhhHHHHHHHhCCCCcCCCCCCCCCCCCChHh
Q psy2882 391 EKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEH 470 (1428)
Q Consensus 391 ~~~~~~~~~~~VGyN~i~FD~~flr~~f~Rn~~~~y~~~~~~g~sr~D~ld~~rl~~~l~p~~~~~p~~~~g~~s~kLe~ 470 (1428)
.+++.. ...|||| +.||.. ++++.. . -++|++-++|.+.| + ++.|++
T Consensus 51 ~~~l~d--~~kV~hn-~K~Dl~-------~~Gi~~----------~-~~fDT~laAyLL~p----------~--~~~L~~ 97 (540)
T 4dfk_A 51 RDLKEA--RGLLAKD-LSVLAL-------REGLGL----------P-PGDDPMLLAYLLDP----------S--NTTPEG 97 (540)
T ss_dssp TTCSSB--CSTTHHH-HHHHHH-------HTTCCC----------C-BCCCHHHHHHHHCT----------T--CCCHHH
T ss_pred HHHHcC--CCEEEec-cHHHHH-------HcCCCC----------C-cceeHHHHHHHhCC----------C--CCCHHH
Confidence 455543 4578888 899976 444331 1 23789999999976 2 589999
Q ss_pred HHHHcCCCCCCCCChHHHHHHHHHHHHHHHhhC
Q psy2882 471 LSFVNNLSHKKAHDALSDVRATLGLARLIRNNN 503 (1428)
Q Consensus 471 L~~~~gi~~~~AHdAlaDv~AT~~l~~~l~~~~ 503 (1428)
||+.|+.. -.|.|..||.+|..|+..|.++-
T Consensus 98 La~~yl~~--~gk~a~~DA~~t~~L~~~L~~~L 128 (540)
T 4dfk_A 98 VARRYGGE--WTEEAGERAALSERLFANLWGRL 128 (540)
T ss_dssp HHHHHTSC--CCSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhh--hccchHHHHHHHHHHHHHHHHHH
Confidence 99998643 35789999999999999887654
No 77
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=94.91 E-value=0.011 Score=52.01 Aligned_cols=27 Identities=7% Similarity=0.185 Sum_probs=24.3
Q ss_pred CCCCccchhhHHHHHHHhCCHHHHHHH
Q psy2882 957 PGVKKIGPKTAVKLLNQYNSLENIINN 983 (1428)
Q Consensus 957 pGvpGIG~KtA~kLL~~~gsle~i~~~ 983 (1428)
-.|||||||++..||+.|||+++|.++
T Consensus 7 ~~IpGIG~kr~~~LL~~Fgs~~~i~~A 33 (63)
T 2a1j_A 7 LKMPGVNAKNCRSLMHHVKNIAELAAL 33 (63)
T ss_dssp HTSTTCCHHHHHHHHHHCSSHHHHHTC
T ss_pred HcCCCCCHHHHHHHHHHcCCHHHHHHC
Confidence 358899999999999999999999864
No 78
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=94.85 E-value=0.45 Score=61.46 Aligned_cols=169 Identities=17% Similarity=0.140 Sum_probs=94.0
Q ss_pred HHHHHHHCCceecCccee------cCCcccccccceeee--------eeeccC-----CceEEEEeeccccCccCCCcce
Q psy2882 271 IVKELEKKGLKIEKNKIK------LPNNSIKKIGNYYID--------ILLHNG-----NSTFLWYDYETFGLNVRRDRPF 331 (1428)
Q Consensus 271 I~~~l~~~gi~v~~~~I~------l~~~pIk~~G~~~V~--------v~l~~~-----~~~~v~~D~ETTGldp~~DrIi 331 (1428)
+.+.|++.|+++=...|. |. .-|...|.+++. .++.+. .-..+.||+||.+ ...|+
T Consensus 95 ~r~~l~~~g~~v~EadI~~~~RfliD-~~i~~~~w~~~~~~~~~~~~~~~~~~~~~~p~lrilsfDIE~~~----~g~i~ 169 (786)
T 3k59_A 95 YEKRLREGGVTVYEADVRPPERYLME-RFITSPVWVEGDMHNGTIVNARLKPHPDYRPPLKWVSIDIETTR----HGELY 169 (786)
T ss_dssp HHHHHHHTTCCCBSTTCCHHHHHHHH-TTCSSEEEEEEEEETTEEEEEEEEECSSCCCCCCEEEEEEEECT----TSCEE
T ss_pred HHHHHHHcCCceeeccCChhheeeEe-cCcccceEEEEeccCCceecceEeeCCCCCCCCeEEEEEEEEcC----CCCEE
Confidence 556676667655444442 22 246666655543 123221 2379999999995 34689
Q ss_pred eEEEEEEeCCceeeccceEEEEecCCCCCCChhhHhhcCCCHHHHhcCCCChHHHHHHHHHHHcC--CCceEEEEcchhh
Q psy2882 332 QFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKITPQFCLNNGIPEYKFASIIEKIFLK--PGTISVGYNTILF 409 (1428)
Q Consensus 332 qiaaIr~~~~~~~i~~~~~~~~~p~~~~~p~pea~~itGITpe~~~~~g~~e~e~~~~i~~~~~~--~~~~~VGyN~i~F 409 (1428)
+||.- +.+ .+ ..+.+.+.....+ +.+.. +.. =-+|.+++..+..++.+ | .+++|||...|
T Consensus 170 ~I~~~--~~~----~~-~v~~l~~~~~~~~------~~~~~---V~~-f~~E~~lL~~f~~~i~~~dP-Dii~g~N~~~F 231 (786)
T 3k59_A 170 CIGLE--GCG----QR-IVYMLGPENGDAS------SLDFE---LEY-VASRPQLLEKLNAWFANYDP-DVIIGWNVVQF 231 (786)
T ss_dssp EEEEE--ETT----EE-EEEEESSCCSCCT------TCSSE---EEE-ESSHHHHHHHHHHHHHHHCC-SEEEESSTTTT
T ss_pred EEEec--CCC----CC-eEEEEecCCCCCC------CCCce---EEE-eCCHHHHHHHHHHHHHHcCC-CEEEecCCccC
Confidence 98742 222 12 2333332211001 11111 111 11578899999888876 4 68999999999
Q ss_pred hHHHHHHHHHHccccch-hh-----hhhc-------------CCCCCchhhHHHHHHHhCCCCcCCCCCCCCCCCCChHh
Q psy2882 410 DDEITRFMFWRNLINPY-ER-----EWKN-------------NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEH 470 (1428)
Q Consensus 410 D~~flr~~f~Rn~~~~y-~~-----~~~~-------------g~sr~D~ld~~rl~~~l~p~~~~~p~~~~g~~s~kLe~ 470 (1428)
|..+|..-..++.++.. .+ .|.. |...+|++++++- .. ....||+|++
T Consensus 232 D~pyL~~Ra~~~~i~~~lGR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~~lk~---~~----------~~l~SysL~~ 298 (786)
T 3k59_A 232 DLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKS---AF----------WNFSSFSLET 298 (786)
T ss_dssp HHHHHHHHHHHHTCCCCCBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHHHHHH---TT----------CCCSCCSHHH
T ss_pred cHHHHHHHHHHhCCCceeccCCCcccccccccCCCceeEEEcCEEEEEhHHHHHh---cc----------CCCCCCCHHH
Confidence 99999766665554421 11 2211 1223455555542 10 1367899999
Q ss_pred HHHHc
Q psy2882 471 LSFVN 475 (1428)
Q Consensus 471 L~~~~ 475 (1428)
+|+++
T Consensus 299 Va~~~ 303 (786)
T 3k59_A 299 VAQEL 303 (786)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99985
No 79
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=94.72 E-value=0.13 Score=67.06 Aligned_cols=178 Identities=14% Similarity=0.103 Sum_probs=98.0
Q ss_pred eeeeeeeccCCceEEEEeeccccC----ccC--CCcceeEEEEEEeCCceeeccceEEE---EecCCCCCC-Ch-hhHh-
Q psy2882 300 YYIDILLHNGNSTFLWYDYETFGL----NVR--RDRPFQFAAIRTDIMLNTIDNPIMLY---CKPAPDFLP-DP-RACL- 367 (1428)
Q Consensus 300 ~~V~v~l~~~~~~~v~~D~ETTGl----dp~--~DrIiqiaaIr~~~~~~~i~~~~~~~---~~p~~~~~p-~p-ea~~- 367 (1428)
|.-.|+.+......+.+|+||+.- ||. .|+|+.|+....+.+ + +.++ ..|.....+ .+ .+..
T Consensus 97 ~~~~i~~~~~~ir~~~~DIEv~~~~~fPd~~~~~~~Ii~It~~d~~~~-----~-~~~~~l~~~~~~~~~~~~~~~~~~~ 170 (903)
T 3qex_A 97 YNYEIKYDHTKIRVANFDIEVTSPDGFPEPSQAKHPIDAITHYDSIDD-----R-FYVFDLLNSPYGNVEEWSIEIAAKL 170 (903)
T ss_dssp CCSCCCCCGGGSCEEEEEEECCCTTSSCCTTTCCSCCCEEEEEETTTT-----E-EEEEEECEETTEECCCCCHHHHHSC
T ss_pred cccccccCcccccEEEEeEEeCCCCCCCCcccCCCCEEEEEEEeCCCC-----E-EEEEEeecccccccccccccccccc
Confidence 333444444446788999999852 233 689999998843222 2 2222 222111111 11 1110
Q ss_pred ----hcCCCHHHHhcCC------CChHHHHHHHHHHHcC--CCceEEEEcchhhhHHHHHHHHHH-cccc------chhh
Q psy2882 368 ----ITKITPQFCLNNG------IPEYKFASIIEKIFLK--PGTISVGYNTILFDDEITRFMFWR-NLIN------PYER 428 (1428)
Q Consensus 368 ----itGITpe~~~~~g------~~e~e~~~~i~~~~~~--~~~~~VGyN~i~FD~~flr~~f~R-n~~~------~y~~ 428 (1428)
-..+..+.+ .+ -+|.+++..+.+++.. | .+++|||...||..+|..=..+ +.++ ++.+
T Consensus 171 ~~~~~~~~~~~~~--~~v~v~~f~sE~eLL~~F~~~I~~~DP-DIItGyN~~~FDlPYL~~RA~~l~gi~~~~~ls~~gR 247 (903)
T 3qex_A 171 QEQGGDEVPSEII--DKIIYMPFDNEKELLMEYLNFWQQKTP-VILTGWNVESFAIPYVYNRIKNIFGESTAKRLSPHRK 247 (903)
T ss_dssp GGGTCCCCCHHHH--TTEEEEEESSHHHHHHHHHHHHHHTCC-SEEECSSTTTTHHHHHHHHHHHHHCHHHHGGGSTTSC
T ss_pred ccccccccccccC--CCeEEEEcCCHHHHHHHHHHHHHHhCC-CEEEecCCccCCHHHHHHHHHHHcCCccccccccccc
Confidence 011222222 12 2678999999999975 4 7899999999999999544433 2221 1111
Q ss_pred --------hh-------hcCCCCCchhhHHHHHHHhCCCCcCCCCCCCCCCCCChHhHHHHcC-CCCCCCCCh-------
Q psy2882 429 --------EW-------KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNN-LSHKKAHDA------- 485 (1428)
Q Consensus 429 --------~~-------~~g~sr~D~ld~~rl~~~l~p~~~~~p~~~~g~~s~kLe~L~~~~g-i~~~~AHdA------- 485 (1428)
.| -.|...+|++++++- +. .....||+|+++|.++. .....-|..
T Consensus 248 ~~~~~~~~~~G~~~~~~i~GRv~lDl~~~~k~---~~---------~~~l~SYsLd~VA~~lLg~~K~d~~~~I~~~~~~ 315 (903)
T 3qex_A 248 TRVKVIENMYGSREIITLFGISVLDYIDLYKK---FS---------FTNQPSYSLDYISEFELNVGKLKYDGPISKLRES 315 (903)
T ss_dssp EEEEEEEETTEEEEEEEETTCEECCHHHHHHH---HS---------CCCCSCCCHHHHHHHHHCCCCCCCSSCGGGHHHH
T ss_pred ccccchhhhcCCceeEEEeCeEEeeHHHHHHH---hC---------ccCcCCCCHHHHHHHHcCCCccccHHHHHHHHhc
Confidence 11 113334566665553 21 01366899999999854 332222211
Q ss_pred ---------HHHHHHHHHHHHH
Q psy2882 486 ---------LSDVRATLGLARL 498 (1428)
Q Consensus 486 ---------laDv~AT~~l~~~ 498 (1428)
+.||..|..|+.+
T Consensus 316 d~~~L~~Ycl~Da~Lt~~L~~K 337 (903)
T 3qex_A 316 NHQRYISYNIIAVYRVLQIDAK 337 (903)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999888776
No 80
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=93.94 E-value=0.023 Score=51.98 Aligned_cols=29 Identities=28% Similarity=0.472 Sum_probs=25.8
Q ss_pred CCCCCCccchhhHHHHHHHhCCHHHHHHH
Q psy2882 955 NLPGVKKIGPKTAVKLLNQYNSLENIINN 983 (1428)
Q Consensus 955 nipGvpGIG~KtA~kLL~~~gsle~i~~~ 983 (1428)
-+-+||||||++|.+|++.||+++++++.
T Consensus 25 ~L~~I~gIG~~~A~~Ll~~fgsl~~l~~a 53 (78)
T 1kft_A 25 SLETIEGVGPKRRQMLLKYMGGLQGLRNA 53 (78)
T ss_dssp GGGGCTTCSSSHHHHHHHHHSCHHHHHHC
T ss_pred HHhcCCCCCHHHHHHHHHHcCCHHHHHHC
Confidence 34589999999999999999999998865
No 81
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=93.77 E-value=0.033 Score=51.87 Aligned_cols=31 Identities=6% Similarity=0.248 Sum_probs=26.1
Q ss_pred CCCccchhhHHHHHHHhCCHHHHHHH-hhhcc
Q psy2882 958 GVKKIGPKTAVKLLNQYNSLENIINN-ANNIK 988 (1428)
Q Consensus 958 GvpGIG~KtA~kLL~~~gsle~i~~~-~~~i~ 988 (1428)
.|||||||++..||+.|||+++|.++ ++++.
T Consensus 22 ~IpGIG~kr~~~LL~~FgSl~~i~~AS~eEL~ 53 (84)
T 1z00_B 22 KMPGVNAKNCRSLMHHVKNIAELAALSQDELT 53 (84)
T ss_dssp TCSSCCHHHHHHHHHHSSCHHHHHHSCHHHHH
T ss_pred hCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHH
Confidence 57899999999999999999999875 34443
No 82
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=93.51 E-value=0.049 Score=50.98 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=24.5
Q ss_pred CCCCccchhhHHHHHHHhCCHHHHHHH
Q psy2882 957 PGVKKIGPKTAVKLLNQYNSLENIINN 983 (1428)
Q Consensus 957 pGvpGIG~KtA~kLL~~~gsle~i~~~ 983 (1428)
-+|||||+++|.+|++.|||++++++.
T Consensus 22 ~~IpgIG~~~A~~Ll~~fgsl~~l~~a 48 (89)
T 1z00_A 22 TTVKSVNKTDSQTLLTTFGSLEQLIAA 48 (89)
T ss_dssp TTSSSCCHHHHHHHHHHTCBHHHHHHC
T ss_pred HcCCCCCHHHHHHHHHHCCCHHHHHhC
Confidence 468999999999999999999999865
No 83
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=93.37 E-value=0.042 Score=49.32 Aligned_cols=27 Identities=22% Similarity=0.511 Sum_probs=24.4
Q ss_pred CCCCccchhhHHHHHHHhCCHHHHHHH
Q psy2882 957 PGVKKIGPKTAVKLLNQYNSLENIINN 983 (1428)
Q Consensus 957 pGvpGIG~KtA~kLL~~~gsle~i~~~ 983 (1428)
-||||||+++|..|++.|||+++++..
T Consensus 17 ~~i~giG~~~a~~Ll~~fgs~~~l~~a 43 (75)
T 1x2i_A 17 EGLPHVSATLARRLLKHFGSVERVFTA 43 (75)
T ss_dssp TTSTTCCHHHHHHHHHHHCSHHHHHHC
T ss_pred cCCCCCCHHHHHHHHHHcCCHHHHHhC
Confidence 468999999999999999999998764
No 84
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=93.34 E-value=0.043 Score=60.03 Aligned_cols=112 Identities=15% Similarity=0.270 Sum_probs=64.2
Q ss_pred HHHHHHHcCCcEEEecchh--------hHHHHHHHHHHHhhhCCCEEEEEeCCCCccccccCcEEEEeCCeeccHHHHHH
Q psy2882 862 IHQMVKAIGWPILIIKGVE--------ADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIALINNNKIHDRTTIIS 933 (1428)
Q Consensus 862 i~~~l~~~gi~~i~~~g~E--------ADD~iatla~~~~~~~~~~v~IvS~DkDl~QLv~~~v~~~~~~~~~~~~~v~~ 933 (1428)
+.++...+..|++...|.. .+++.+.|+.... ..|..++..++.+|..+++..-.....+.. . ..+.-
T Consensus 72 ~~~l~~~~~~~~lliE~d~~~~~~~~~~~~i~~~l~~~~~-~~~~~vi~t~s~~eta~~l~~l~~~~~~~~--~-~ai~~ 147 (219)
T 2bgw_A 72 ASRLAEHYETVFIIVEGPPVPRRYRGRERSLYAAMAALQL-DYGIRLMNTMDPKGTALVIESLARLSTREG--G-QRIVI 147 (219)
T ss_dssp HHHHHHHCSEEEEEEESCSSCGGGTTTHHHHHHHHHHHHH-HSCCEEEEESSHHHHHHHHHHHHHHHSCBC--C-TTCCC
T ss_pred HHHHHHhcCCcEEEEEecCccccccCCHHHHHHHHHHHHH-HCCceEEEcCCHHHHHHHHHHHHHhccccc--c-ccccc
Confidence 3444455788888888753 7889999987654 358888777677775555431100000000 0 00000
Q ss_pred HhCCChhhHHhhhhccccccCCCCCCCccchhhHHHHHHHhCCHHHHHHH
Q psy2882 934 RFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINN 983 (1428)
Q Consensus 934 ~~Gv~p~q~~d~~aL~GD~sDnipGvpGIG~KtA~kLL~~~gsle~i~~~ 983 (1428)
.-...|....+....+ +-||||||+++|..|++.|||+++++++
T Consensus 148 ~~~~~~~~~~~~~~~~------L~~i~gVg~~~a~~Ll~~fgs~~~l~~a 191 (219)
T 2bgw_A 148 HKKPRLSDVREWQLYI------LQSFPGIGRRTAERILERFGSLERFFTA 191 (219)
T ss_dssp CCCCCCCHHHHHHHHH------HHTSTTCCHHHHHHHHHHHSSHHHHTTC
T ss_pred ccccccccHHHHHHHH------HhcCCCCCHHHHHHHHHHcCCHHHHHhC
Confidence 0001122222111111 2369999999999999999999998754
No 85
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=92.94 E-value=0.21 Score=62.51 Aligned_cols=129 Identities=11% Similarity=-0.016 Sum_probs=82.7
Q ss_pred EEEEeeccccCccCCCcceeEEEEEEeCCceeeccceEEEEecCCCCCCChhhHhhcCCCHHHHhcCCCChHHHHHHHHH
Q psy2882 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKITPQFCLNNGIPEYKFASIIEK 392 (1428)
Q Consensus 313 ~v~~D~ETTGldp~~DrIiqiaaIr~~~~~~~i~~~~~~~~~p~~~~~p~pea~~itGITpe~~~~~g~~e~e~~~~i~~ 392 (1428)
-..+|+||+|+++..++++-|+.- . .+ ..+|+.+ . | ......+..
T Consensus 31 ~~aldtE~~~~~~~~a~Lvgisla-~-~~-------~a~yIp~--------~----~--------------~~~l~~Lk~ 75 (592)
T 3pv8_A 31 KAALVVEVVEENYHDAPIVGIAVV-N-EH-------GRFFLRP--------E----T--------------ALADPQFVA 75 (592)
T ss_dssp EEEEEEECCSSSCTTCCCCEEEEE-E-TT-------EEEEECH--------H----H--------------HTTCHHHHH
T ss_pred CcEEEEEEcCCccCcccEEEEEEE-c-CC-------ceEEEcc--------c----h--------------hhHHHHHHH
Confidence 358999999999999998766543 2 11 1244411 0 0 112345677
Q ss_pred HHcCCCceEEEEcchhhhHHHHHHHHHHccccchhhhhhcCCCCCchhhHHHHHHHhCCCCcCCCCCCCCCCCCChHhHH
Q psy2882 393 IFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLS 472 (1428)
Q Consensus 393 ~~~~~~~~~VGyN~i~FD~~flr~~f~Rn~~~~y~~~~~~g~sr~D~ld~~rl~~~l~p~~~~~p~~~~g~~s~kLe~L~ 472 (1428)
+|..++...|||| +.||..+|. ++++.. . --+.|++-++|.+.|. ..++.|++|+
T Consensus 76 lLed~~i~KV~hn-~K~Dl~vL~----~~Gi~l-~---------g~~fDTmLAAYLL~p~----------~~~~~L~~La 130 (592)
T 3pv8_A 76 WLGDETKKKSMFD-SKRAAVALK----WKGIEL-C---------GVSFDLLLAAYLLDPA----------QGVDDVAAAA 130 (592)
T ss_dssp HHTCTTSEEEESS-HHHHHHHHH----HTTCCC-C---------CEEEEHHHHHHHHCGG----------GCCCSHHHHH
T ss_pred HHhCCCCeEEEec-hHHHHHHHH----HcCCCC-C---------CccchHHHHHHHcCCC----------CCCCCHHHHH
Confidence 7888777889988 899998874 334331 1 1236899999999773 3468999999
Q ss_pred HHc-CCCCCC-------------------CCChHHHHHHHHHHHHHHHh
Q psy2882 473 FVN-NLSHKK-------------------AHDALSDVRATLGLARLIRN 501 (1428)
Q Consensus 473 ~~~-gi~~~~-------------------AHdAlaDv~AT~~l~~~l~~ 501 (1428)
..| |+.... .+-|..||.+|..|+..|.+
T Consensus 131 ~~yLg~~l~~~ee~~gkg~~~~~~~~e~~~~YAa~DA~~l~~L~~~L~~ 179 (592)
T 3pv8_A 131 KMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLD 179 (592)
T ss_dssp GGGTCCSSCCHHHHHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCchHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 986 433210 12355677777776666654
No 86
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=92.58 E-value=0.57 Score=56.31 Aligned_cols=128 Identities=15% Similarity=0.025 Sum_probs=80.9
Q ss_pred eEEEEeeccccCccCCCcc--eeEEEEEEeCCceeeccceEEEEecCCCCCCChhhHhhcCCCHHHHhcCCCChHHHHHH
Q psy2882 312 TFLWYDYETFGLNVRRDRP--FQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKITPQFCLNNGIPEYKFASI 389 (1428)
Q Consensus 312 ~~v~~D~ETTGldp~~DrI--iqiaaIr~~~~~~~i~~~~~~~~~p~~~~~p~pea~~itGITpe~~~~~g~~e~e~~~~ 389 (1428)
..+.+|+||+++++...++ |||| + .+ ..+++.|... + + .+..
T Consensus 130 ~~vavDtE~~~~~~~~~~l~lIQLa---~-~~-------~~~lidpl~l-----------~---~-----------~l~~ 173 (428)
T 3saf_A 130 QEFAVNLEHHSYRSFLGLTCLMQIS---T-RT-------EDFIIDTLEL-----------R---S-----------DMYI 173 (428)
T ss_dssp SEEEEEEEEECTTCSSCEEEEEEEE---C-SS-------CEEEEETTTT-----------G---G-----------GGGG
T ss_pred CeEEEEEEecCCCCCCCeEEEEEEE---e-CC-------cEEEEEeccc-----------h---h-----------hHHH
Confidence 5799999999999887775 3443 1 11 1344443320 0 0 1224
Q ss_pred HHHHHcCCCceEEEEcchhhhHHHHHHHHHHccccchhhhhhcCCCCCchhhHHHHHHHhCCCCcCCCCCCCCCCCCChH
Q psy2882 390 IEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLE 469 (1428)
Q Consensus 390 i~~~~~~~~~~~VGyN~i~FD~~flr~~f~Rn~~~~y~~~~~~g~sr~D~ld~~rl~~~l~p~~~~~p~~~~g~~s~kLe 469 (1428)
+..+|..++..-|||| +++|..+|... .++.+ --++|+.-+++.+.+ .++.|+
T Consensus 174 L~~lL~dp~i~KV~H~-~k~Dl~~L~~~---~Gi~~-----------~~~fDT~lAa~lL~~------------~~~gL~ 226 (428)
T 3saf_A 174 LNESLTDPAIVKVFHG-ADSDIEWLQKD---FGLYV-----------VNMFDTHQAARLLNL------------GRHSLD 226 (428)
T ss_dssp GHHHHTCTTSEEEESS-CHHHHHHHHHH---HCCCC-----------SSEEEHHHHHHHTTC------------SCCSHH
T ss_pred HHHHHcCCCceEEEee-hHHHHHHHHHH---cCCCc-----------CceeechhHHHHhCC------------CCCCHH
Confidence 5566777777789988 79999887432 22221 014678888888743 137899
Q ss_pred hHHHHc-CCCCCCC----------------CChHHHHHHHHHHHHHHHhh
Q psy2882 470 HLSFVN-NLSHKKA----------------HDALSDVRATLGLARLIRNN 502 (1428)
Q Consensus 470 ~L~~~~-gi~~~~A----------------HdAlaDv~AT~~l~~~l~~~ 502 (1428)
+|++.+ |+..... +-|..||.++..|+..|.++
T Consensus 227 ~Lv~~~Lg~~l~K~~~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~ 276 (428)
T 3saf_A 227 HLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLE 276 (428)
T ss_dssp HHHHHHHCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998864 6653322 23678999999888877653
No 87
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=92.41 E-value=0.052 Score=51.08 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=24.0
Q ss_pred CCCCccchhhHHHHHHHhCCHHHHHHH
Q psy2882 957 PGVKKIGPKTAVKLLNQYNSLENIINN 983 (1428)
Q Consensus 957 pGvpGIG~KtA~kLL~~~gsle~i~~~ 983 (1428)
-+|||||+++|.+|++.||+++++++.
T Consensus 35 ~~IpgIG~~~A~~Ll~~fgs~~~l~~a 61 (91)
T 2a1j_B 35 TTVKSVNKTDSQTLLTTFGSLEQLIAA 61 (91)
T ss_dssp TTSTTCCHHHHHHHHHHHSSHHHHHSC
T ss_pred HcCCCCCHHHHHHHHHHCCCHHHHHhC
Confidence 468999999999999999999988754
No 88
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=91.82 E-value=0.016 Score=59.80 Aligned_cols=52 Identities=15% Similarity=0.355 Sum_probs=46.6
Q ss_pred HhcCCCcch--hhhhhccccccccCcceeecccc--cccccccchhhhhhcCCCcc
Q psy2882 1251 KLLGVNPLI--IGIAFGNTLIKHAKPLKIIHSIT--NKAKFNEISKLVEKWKPNTV 1302 (1428)
Q Consensus 1251 ~~~~~d~~~--i~~~~G~~~~~~a~p~~~~~~~~--~~~~~~~~~~~~~~~~p~~v 1302 (1428)
+-||+|||+ +|.|+++.....|.|+.+|.... ....|..|..++++|+|+.+
T Consensus 4 riLGiDpG~~riGvAv~d~~g~~a~p~~~I~~~~~r~~~~~~~l~~li~~~~~~~i 59 (150)
T 1vhx_A 4 RILGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKI 59 (150)
T ss_dssp EEEEEEECSSEEEEEEECTTSSSEEEEEEEECBGGGTBCCHHHHHHHHTTSEEEEE
T ss_pred EEEEEEccCCEEEEEEEECCCCEEeeEEEEEcCCcchHHHHHHHHHHHHHcCCCEE
Confidence 468999987 99999999999999999998755 67899999999999999777
No 89
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=90.93 E-value=0.093 Score=57.27 Aligned_cols=149 Identities=18% Similarity=0.211 Sum_probs=71.8
Q ss_pred EEEEeCCCCCcccCCChhhhcCCCCCChHHHHHHHHHHHHHHHcCCc-EEEecchhhHHHHHHHHHHHhhhCCCEEEEEe
Q psy2882 826 ACIFDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWP-ILIIKGVEADDVIGTLAKQAVTKHNLKVIIST 904 (1428)
Q Consensus 826 v~~fD~~~~~fR~~l~p~YKa~R~~~p~~l~~q~~~i~~~l~~~gi~-~i~~~g~EADD~iatla~~~~~~~~~~v~IvS 904 (1428)
.|||+.+ .+.+.-|-.||-.= ..|+++...-+.+.+-+..+.+| .+..+| +--.+.....-. ++-|..+-|++
T Consensus 42 mVvf~~g--~p~k~~YRrf~i~~-~g~DDya~m~Evl~RR~~r~~~PDLiliDG--GkgQl~~a~~vl-~~lg~~i~v~g 115 (220)
T 2nrt_A 42 LVVFEDG--FPKKGDYRRYKIEQ-DHPDDYESIRTVVKRRYSKHPLPNLLFVDG--GIGQVNAAIEAL-KEIGKDCPVVG 115 (220)
T ss_dssp EEEEETT--EECGGGCEEEEEEC-SSCCHHHHHHHHHHHHHTTSCCCSEEEESS--SHHHHHHHHHHH-HHTTCCCCEEE
T ss_pred EEEEeCC--ccChhhCceeeCCC-CCCCHHHHHHHHHHHHhccCCCCCEEEEeC--CHHHHHHHHHHH-HHcCCCCeEEE
Confidence 4566643 45667777777633 34677766555555555444566 455666 222333222222 22343333444
Q ss_pred CCCCccccccCcE-EEEeCCe--eccHHHHH---HHhCCChhhHHhhhhccccccCCCCCCCccchhhHHHHHHHhCCHH
Q psy2882 905 NDKDMAQLVSNKI-ALINNNK--IHDRTTII---SRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLE 978 (1428)
Q Consensus 905 ~DkDl~QLv~~~v-~~~~~~~--~~~~~~v~---~~~Gv~p~q~~d~~aL~GD~sDnipGvpGIG~KtA~kLL~~~gsle 978 (1428)
-=|+.-.+.-++- ..+.+.. ..-...+. -.|.++-++=.--+.+. .--+-||||||||+|.+|++.|||++
T Consensus 116 laK~~e~l~~~~~~~~l~~~s~~l~llq~iRDEaHRFAIt~hr~~R~k~~~---~s~LdgIpGIG~k~ak~Ll~~FgSl~ 192 (220)
T 2nrt_A 116 LAKKEETVVFENREIHLPHDHPVLRLLVQIRDETHRFAVSYHRKRREKESL---RSVLDNVPGIGPIRKKKLIEHFGSLE 192 (220)
T ss_dssp ECTTTCCEEETTEEECCCTTCHHHHHHHHHHHHHHHHHHGGGHHHHHHHHH---HHHHTTSTTCCHHHHHHHHHHHCSHH
T ss_pred EECCCcEEEeCCCeeecCCCCHHHHhhhhhcchhhhccccccccccccccc---cccccCCCCcCHHHHHHHHHHcCCHH
Confidence 4444222222221 1111110 01111121 12333322211111111 11135789999999999999999999
Q ss_pred HHHHH
Q psy2882 979 NIINN 983 (1428)
Q Consensus 979 ~i~~~ 983 (1428)
+|.++
T Consensus 193 ~i~~A 197 (220)
T 2nrt_A 193 NIRSA 197 (220)
T ss_dssp HHHTS
T ss_pred HHHhC
Confidence 98764
No 90
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=87.32 E-value=2.7 Score=45.05 Aligned_cols=88 Identities=16% Similarity=-0.055 Sum_probs=57.0
Q ss_pred HHHHHHcCCCceEEEEcchhhhHHHHHHHHHHccccchhhhhhcCCCCCchhh-HHHHHHHhCCCCcCCCCCCCCCCCCC
Q psy2882 389 IIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKNNCSRWDLIN-VIKAFYVLSPYGITWPYKNNGKPSFK 467 (1428)
Q Consensus 389 ~i~~~~~~~~~~~VGyN~i~FD~~flr~~f~Rn~~~~y~~~~~~g~sr~D~ld-~~rl~~~l~p~~~~~p~~~~g~~s~k 467 (1428)
.+..+|..++...|||| +++|..+|+.. .++.+ ++ ++| +.-+++.+.| ..++.
T Consensus 87 ~L~~lL~d~~i~Kv~~~-~k~D~~~L~~~---~gi~~--------~~---~fDlt~lAayll~~-----------~~~~~ 140 (208)
T 2e6m_A 87 GLKMLLENKSIKKAGVG-IEGDQWKLLRD---FDVKL--------ES---FVELTDVANEKLKC-----------AETWS 140 (208)
T ss_dssp HHHHHHTCTTSEEEESS-HHHHHHHHHHH---HCCCC--------CS---EEEHHHHHHHHTTC-----------CCCCC
T ss_pred HHHHHhcCCCceEEEEe-eHHHHHHHHHH---CCCCC--------CC---EEEHHHHHHHHccC-----------CCChh
Confidence 45667777777889988 89998887532 12221 11 356 3445566543 23588
Q ss_pred hHhHHHHc-CCCCCC------------------CCChHHHHHHHHHHHHHHHhh
Q psy2882 468 LEHLSFVN-NLSHKK------------------AHDALSDVRATLGLARLIRNN 502 (1428)
Q Consensus 468 Le~L~~~~-gi~~~~------------------AHdAlaDv~AT~~l~~~l~~~ 502 (1428)
|++|++.+ |..... .+=|..||.++..|+..|.++
T Consensus 141 L~~L~~~~l~~~~~K~k~~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~ 194 (208)
T 2e6m_A 141 LNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNL 194 (208)
T ss_dssp HHHHHHHHHSCBCCCCHHHHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCcCCCCCeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999987 654311 122668999999998888765
No 91
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=86.14 E-value=0.14 Score=56.12 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=0.0
Q ss_pred CCCCCccchhhHHHHHHHhCCHHHHHHH
Q psy2882 956 LPGVKKIGPKTAVKLLNQYNSLENIINN 983 (1428)
Q Consensus 956 ipGvpGIG~KtA~kLL~~~gsle~i~~~ 983 (1428)
+-||||||||+|.+|++.|||+++|.++
T Consensus 175 L~~IpGIG~k~ak~Ll~~FGSl~~i~~A 202 (226)
T 3c65_A 175 LDDIPGVGEKRKKALLNYFGSVKKMKEA 202 (226)
T ss_dssp ----------------------------
T ss_pred ccccCCCCHHHHHHHHHHhCCHHHHHhC
Confidence 4689999999999999999999998765
No 92
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=82.11 E-value=0.5 Score=47.36 Aligned_cols=41 Identities=22% Similarity=0.347 Sum_probs=29.1
Q ss_pred CCccchhhHHHHHHH--hCCHHHHHHHhhhcchhhhhhHHHhhh
Q psy2882 959 VKKIGPKTAVKLLNQ--YNSLENIINNANNIKGVIGKNLRFALN 1000 (1428)
Q Consensus 959 vpGIG~KtA~kLL~~--~gsle~i~~~~~~i~~k~~~~l~~~~~ 1000 (1428)
+|||||++|.++++. |.|+|+++ ++.-|..+..++++.+++
T Consensus 68 LpGiGp~~A~~II~~GpF~svedL~-~V~GIg~k~~e~l~~~~~ 110 (134)
T 1s5l_U 68 YRGLYPTLAKLIVKNAPYESVEDVL-NIPGLTERQKQILRENLE 110 (134)
T ss_dssp STTCTHHHHHHHHHTCCCSSGGGGG-GCTTCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHcCCCCCHHHHH-hCCCCCHHHHHHHHHhhc
Confidence 589999999999964 66888886 445555555555655544
No 93
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=80.70 E-value=0.77 Score=53.29 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=23.9
Q ss_pred CCCccchhhHHHHHHHhCCHHHHHHH
Q psy2882 958 GVKKIGPKTAVKLLNQYNSLENIINN 983 (1428)
Q Consensus 958 GvpGIG~KtA~kLL~~~gsle~i~~~ 983 (1428)
.||||||++|..||++|||++.+..+
T Consensus 472 AIaGIGp~tAeRLLEkFGSVe~Vm~A 497 (685)
T 4gfj_A 472 SIRGIDRERAERLLKKYGGYSKVREA 497 (685)
T ss_dssp TSTTCCHHHHHHHHHHHTSHHHHHHS
T ss_pred ccCCCCHHHHHHHHHHhcCHHHHHhC
Confidence 48999999999999999999998874
No 94
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=79.00 E-value=0.75 Score=49.27 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=19.9
Q ss_pred CCccchhhHHHHHHHhCC---HHHHH
Q psy2882 959 VKKIGPKTAVKLLNQYNS---LENII 981 (1428)
Q Consensus 959 vpGIG~KtA~kLL~~~gs---le~i~ 981 (1428)
|+|||||+|.++|+.||+ .+.|.
T Consensus 77 v~GIGpk~A~~iL~~f~~~~l~~aI~ 102 (191)
T 1ixr_A 77 VSGVGPKVALALLSALPPRLLARALL 102 (191)
T ss_dssp SSCCCHHHHHHHHHHSCHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHhCChHHHHHHHH
Confidence 899999999999999998 54454
No 95
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=77.95 E-value=1.3 Score=47.80 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=20.7
Q ss_pred CCccchhhHHHHHHHhCC---HHHHHH
Q psy2882 959 VKKIGPKTAVKLLNQYNS---LENIIN 982 (1428)
Q Consensus 959 vpGIG~KtA~kLL~~~gs---le~i~~ 982 (1428)
|+|||||+|.+||+.||+ .+.|.+
T Consensus 78 V~GIGpk~A~~iL~~f~~~~l~~aI~~ 104 (203)
T 1cuk_A 78 TNGVGPKLALAILSGMSAQQFVNAVER 104 (203)
T ss_dssp SSSCCHHHHHHHHHHSCHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHhhCChHHHHHHHHh
Confidence 899999999999999998 555553
No 96
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=70.58 E-value=0.92 Score=50.31 Aligned_cols=27 Identities=26% Similarity=0.548 Sum_probs=0.0
Q ss_pred CCCCCCccchhhHHHHHHH-hCCHHHHH
Q psy2882 955 NLPGVKKIGPKTAVKLLNQ-YNSLENII 981 (1428)
Q Consensus 955 nipGvpGIG~KtA~kLL~~-~gsle~i~ 981 (1428)
-+-.|||||||+|.+|++. |+|++.|.
T Consensus 16 ~L~~IpGIGpk~a~~Ll~~gf~sve~L~ 43 (241)
T 1vq8_Y 16 ELTDISGVGPSKAESLREAGFESVEDVR 43 (241)
T ss_dssp ----------------------------
T ss_pred HHhcCCCCCHHHHHHHHHcCCCCHHHHH
Confidence 3557899999999999998 99999886
No 97
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=70.38 E-value=7.9 Score=46.51 Aligned_cols=100 Identities=19% Similarity=0.162 Sum_probs=58.3
Q ss_pred HHHHHHHHcCCCceEEEEcchhhhHHHHHHHHHHccccchhhhhhcCCCCCchhhHHHHHHHhCCCCcCC-------CCC
Q psy2882 387 ASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITW-------PYK 459 (1428)
Q Consensus 387 ~~~i~~~~~~~~~~~VGyN~i~FD~~flr~~f~Rn~~~~y~~~~~~g~sr~D~ld~~rl~~~l~p~~~~~-------p~~ 459 (1428)
++.|.+.+.+.+.++|||| .-+|.-++-..|+ .|+...| -+.....+.+.|..+.. |..
T Consensus 270 fr~V~~~L~~s~KpiVGHN-~llDl~~l~~~F~----~pLP~~~---------~eFk~~i~~lFP~i~DTK~la~~~~~~ 335 (430)
T 2a1r_A 270 FSRVIHAIANSGKLVIGHN-MLLDVMHTVHQFY----CPLPADL---------SEFKEMTTCVFPRLLDTKLMASTQPFK 335 (430)
T ss_dssp THHHHHHHHHHCCEEEESS-CHHHHHHHHHHHT----CCCCSSH---------HHHHHHHHHHCSSEEEHHHHHTSTTTT
T ss_pred HHHHHHHHHhCCCceEech-hHHHHHHHHHHhc----cCCCCCH---------HHHHHHHHHHCCceeehHHhhhccchh
Confidence 4566666665567899999 4688877654444 4433332 33333444444432221 111
Q ss_pred CCCCCCCChHhHHHHcC--------------C-----CCCCCCChHHHHHHHHHHHHHHHh
Q psy2882 460 NNGKPSFKLEHLSFVNN--------------L-----SHKKAHDALSDVRATLGLARLIRN 501 (1428)
Q Consensus 460 ~~g~~s~kLe~L~~~~g--------------i-----~~~~AHdAlaDv~AT~~l~~~l~~ 501 (1428)
.-.++-.|++|...+. . ....+|.|-.|++.|..++-+|..
T Consensus 336 -~~~~~~sL~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~ 395 (430)
T 2a1r_A 336 -DIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMAN 395 (430)
T ss_dssp -TTCSCCSHHHHHHHTTSTTCCCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHHH
T ss_pred -hccCCCCHHHHHHHHHhCCCCCCeeecCCCccccccCCCCccchHHHHHHHHHHHHHHHH
Confidence 1234567888876542 1 124579999999999999888874
No 98
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=70.08 E-value=7.9 Score=48.27 Aligned_cols=132 Identities=13% Similarity=0.075 Sum_probs=79.6
Q ss_pred ceEEEEeeccccCccCCCcceeEEEEEEeCCceeeccceEEEEecCCCCCCChhhHhhcCCCHHHHhcCCCChHHHHHHH
Q psy2882 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKITPQFCLNNGIPEYKFASII 390 (1428)
Q Consensus 311 ~~~v~~D~ETTGldp~~DrIiqiaaIr~~~~~~~i~~~~~~~~~p~~~~~p~pea~~itGITpe~~~~~g~~e~e~~~~i 390 (1428)
..++++|+|||. |+..++|..+|.. +.+ .... ++..- +..+++..+
T Consensus 6 ~~i~~~D~Et~~-d~~~~~~~~i~~~--~~~--~~~~---~~~~~--------------------------~l~~fi~~~ 51 (575)
T 2py5_A 6 RKMYSCAFETTT-KVEDCRVWAYGYM--NIE--DHSE---YKIGN--------------------------SLDEFMAWV 51 (575)
T ss_dssp CCEEEEEEEECC-BTTBCCEEEEEEE--ESS--CTTC---EEEES--------------------------CHHHHHHHH
T ss_pred ceEEEEEEEeec-CCCCCceEEEEEE--eCC--ceEE---EEech--------------------------hHHHHHHHH
Confidence 368999999985 8888999999874 322 1122 22210 113444443
Q ss_pred HHHHcCCCceEEEEcchhhhHHHHHHHHHHcc-------cc-chhhhh-hcCC---------------CCCchhhHHHHH
Q psy2882 391 EKIFLKPGTISVGYNTILFDDEITRFMFWRNL-------IN-PYEREW-KNNC---------------SRWDLINVIKAF 446 (1428)
Q Consensus 391 ~~~~~~~~~~~VGyN~i~FD~~flr~~f~Rn~-------~~-~y~~~~-~~g~---------------sr~D~ld~~rl~ 446 (1428)
. ..+..+++|| +.||..||-..+.++. .+ .+.... .+|. ..+|++|.++++
T Consensus 52 ~----~~~~~i~~hN-l~FD~~~l~~~~~~~~~~~~~~~~p~~~~~~i~r~~~~~~~~i~~~~~~k~~~~i~~~Ds~~~~ 126 (575)
T 2py5_A 52 L----KVQADLYFHN-LKFAGAFIINWLERNGFKWSADGLPNTYNTIISRMGQWYMIDICLGYKGKRKIHTVIYDSLKKL 126 (575)
T ss_dssp H----HHCCEEEETT-HHHHHHHHHHHHHHTTCEECTTCCTTEEEEEEBTTCCEEEEEEEEEEETTEEEEEEEEEHHHHS
T ss_pred H----HcCCEEEEEC-hhhhHHHHHHHHHHhCcccccccccccccceeccCCeEEEEEEEEecCCCceEEEEEEEhHhhh
Confidence 3 2234688888 5999999998888763 11 100000 0111 136777777761
Q ss_pred HHhCCCCcCCCCCCCCCCCCChHhHHHHcCCCCCC---CCC----------------hHHHHHHHHHHHHHH
Q psy2882 447 YVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKK---AHD----------------ALSDVRATLGLARLI 499 (1428)
Q Consensus 447 ~~l~p~~~~~p~~~~g~~s~kLe~L~~~~gi~~~~---AHd----------------AlaDv~AT~~l~~~l 499 (1428)
+++|+.+++.++++... .|+ .+.||+.+.+++...
T Consensus 127 ------------------~~SL~~~a~~f~~~~~K~~~py~~~~~~~~~~~~~~~~Y~~~Dv~ll~~i~~~~ 180 (575)
T 2py5_A 127 ------------------PFPVKKIAKDFKLTVLKGDIDYHKERPVGYKITPEEYAYIKNDIQIIAEALLIQ 180 (575)
T ss_dssp ------------------CSCHHHHHHHTTCCCCSSCCCTTSCCCTTCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------hhhHHHHHHHhCCcccCCccCccccCcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 26999999999876210 122 467899888877644
No 99
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=69.32 E-value=4.9 Score=42.98 Aligned_cols=50 Identities=20% Similarity=0.374 Sum_probs=35.7
Q ss_pred CChhhHHhhhhcccc---ccCCCCCCCccchhhHHHHHHH-----hCCHHHHHHHhhh
Q psy2882 937 VSPEKIVDYFSLIGD---MSDNLPGVKKIGPKTAVKLLNQ-----YNSLENIINNANN 986 (1428)
Q Consensus 937 v~p~q~~d~~aL~GD---~sDnipGvpGIG~KtA~kLL~~-----~gsle~i~~~~~~ 986 (1428)
-....+++|..-+|- +..-+-.+|||||++|.++|+. |.|+|++.+.+.-
T Consensus 112 ~~E~~fv~f~n~a~pITA~~~eL~~LpGIG~k~A~~IIeyRe~G~F~s~eDL~~RV~G 169 (205)
T 2i5h_A 112 QDEKKYVDFFNKADSITTRMHQLELLPGVGKKMMWAIIEERKKRPFESFEDIAQRVKG 169 (205)
T ss_dssp TTHHHHHHHHC--CCBCSSSBGGGGSTTCCHHHHHHHHHHHHHSCCCSHHHHHHHSTT
T ss_pred hchhhhhhhccccCCccCCHHHHhcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHhcCC
Confidence 356777887664443 2233557999999999999974 7899999887665
No 100
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=68.57 E-value=2.8 Score=52.95 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=23.8
Q ss_pred CCCccchhhHHHHHHHhCCHHHHHHH
Q psy2882 958 GVKKIGPKTAVKLLNQYNSLENIINN 983 (1428)
Q Consensus 958 GvpGIG~KtA~kLL~~~gsle~i~~~ 983 (1428)
||||||+++|..|++.|||+++|.++
T Consensus 516 gi~~VG~~~Ak~La~~Fgsl~~l~~A 541 (671)
T 2owo_A 516 GIREVGEATAAGLAAYFGTLEALEAA 541 (671)
T ss_dssp TCTTCCHHHHHHHHHHHCSHHHHHTC
T ss_pred cccCccHHHHHHHHHHcCCHHHHHhC
Confidence 78999999999999999999998654
No 101
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=65.78 E-value=30 Score=37.16 Aligned_cols=90 Identities=13% Similarity=-0.073 Sum_probs=55.3
Q ss_pred HHHHHHcCCCceEEEEcchhhhHHHHHHHHHHccccchhhhhhcCCCCCchhhHHHHHHHhCCCCcCCCCCCCCCCCCCh
Q psy2882 389 IIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKL 468 (1428)
Q Consensus 389 ~i~~~~~~~~~~~VGyN~i~FD~~flr~~f~Rn~~~~y~~~~~~g~sr~D~ld~~rl~~~l~p~~~~~p~~~~g~~s~kL 468 (1428)
.+.++|..++.+.|||. +++|.+.|+..| ++.+ . .++|+-.++..+... | ...+..|
T Consensus 99 ~L~~lL~d~~i~Kvg~~-~~~D~~~L~~~~---g~~~--------~---~~~Dl~~la~~~lg~----~----~~~~~gL 155 (206)
T 1vk0_A 99 DLYRFFASKFVTFVGVQ-IEEDLDLLRENH---GLVI--------R---NAINVGKLAAEARGT----L----VLEFLGT 155 (206)
T ss_dssp HHHHHHTCSSSEEEESS-CHHHHHHHHHHH---CCCC--------S---SEEEHHHHHHHHHTC----G----GGGGCCH
T ss_pred HHHHHhcCCCceEEEec-cHHHHHHHHHhc---CCCc--------C---CeeeHHHHHHHHcCC----C----CCCCccH
Confidence 36677888888899987 899999986543 1111 1 235544443322110 1 0234677
Q ss_pred HhHHHH-cCCCC----------------CCCCChHHHHHHHHHHHHHHHh
Q psy2882 469 EHLSFV-NNLSH----------------KKAHDALSDVRATLGLARLIRN 501 (1428)
Q Consensus 469 e~L~~~-~gi~~----------------~~AHdAlaDv~AT~~l~~~l~~ 501 (1428)
..|++. +|++. .+-+=|..||++..+|+.+|.+
T Consensus 156 ~~Lv~~~lg~~lK~k~~~~SdW~~pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 156 RELAHRVLWSDLGQLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HHHHHHHHCCCCHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcCCCCCcccCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 777764 46554 1234588999999999988864
No 102
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=65.30 E-value=19 Score=42.22 Aligned_cols=88 Identities=15% Similarity=-0.004 Sum_probs=59.9
Q ss_pred HHHHHHcCCCceEEEEcchhhhHHHHHHHHHHccccchhhhhhcCCCCCchhhHHHHHHHhCCCCcCCCCCCCCCCCCCh
Q psy2882 389 IIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKL 468 (1428)
Q Consensus 389 ~i~~~~~~~~~~~VGyN~i~FD~~flr~~f~Rn~~~~y~~~~~~g~sr~D~ld~~rl~~~l~p~~~~~p~~~~g~~s~kL 468 (1428)
.+...|..++...|||| +++|..+|... .++.+- -++|+.-++|.+.|. .++.|
T Consensus 65 ~L~~ll~d~~i~Kv~h~-~k~Dl~~L~~~---~Gi~~~-----------~~fDt~lAa~lL~~~-----------~~~~L 118 (375)
T 1yt3_A 65 PLKAILRDPSITKFLHA-GSEDLEVFLNV---FGELPQ-----------PLIDTQILAAFCGRP-----------MSWGF 118 (375)
T ss_dssp HHHHHHHCTTSEEEESS-CHHHHHHHHHH---HSSCCS-----------SEEEHHHHHHHTTCC-----------TTCCH
T ss_pred HHHHHHcCCCceEEEee-HHHHHHHHHHH---cCCCCC-----------cEEEcHHHHHHcCCC-----------CChhH
Confidence 45667777767789988 79999888542 222220 236777888887541 36899
Q ss_pred HhHHHHc-CCCCCCCCC----------------hHHHHHHHHHHHHHHHhh
Q psy2882 469 EHLSFVN-NLSHKKAHD----------------ALSDVRATLGLARLIRNN 502 (1428)
Q Consensus 469 e~L~~~~-gi~~~~AHd----------------AlaDv~AT~~l~~~l~~~ 502 (1428)
++|++.+ |+.....|. |..||.++..|+..|.++
T Consensus 119 ~~L~~~~l~~~l~K~~~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~ 169 (375)
T 1yt3_A 119 ASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVE 169 (375)
T ss_dssp HHHHHHHHCCCCCCTTTTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987 765433221 567888888888877654
No 103
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=65.24 E-value=3.4 Score=47.98 Aligned_cols=26 Identities=35% Similarity=0.621 Sum_probs=23.1
Q ss_pred CCCCccchhhHHHHHHHhC--CHHHHHHH
Q psy2882 957 PGVKKIGPKTAVKLLNQYN--SLENIINN 983 (1428)
Q Consensus 957 pGvpGIG~KtA~kLL~~~g--sle~i~~~ 983 (1428)
-.|||||||||.+|-++ | |+|++.++
T Consensus 101 ~~V~GiGpk~a~~l~~~-Gi~tledL~~a 128 (335)
T 2fmp_A 101 TRVSGIGPSAARKFVDE-GIKTLEDLRKN 128 (335)
T ss_dssp TTSTTCCHHHHHHHHHT-TCCSHHHHHTC
T ss_pred hCCCCCCHHHHHHHHHc-CCCCHHHHHHh
Confidence 46899999999999988 7 89999876
No 104
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=64.25 E-value=2.4 Score=38.08 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=15.3
Q ss_pred CCCCccchhhHHHHHHHh
Q psy2882 957 PGVKKIGPKTAVKLLNQY 974 (1428)
Q Consensus 957 pGvpGIG~KtA~kLL~~~ 974 (1428)
-.|||||+++|.++++.+
T Consensus 30 ~~ipGIG~~~A~~Il~~r 47 (75)
T 2duy_A 30 MALPGIGPVLARRIVEGR 47 (75)
T ss_dssp TTSTTCCHHHHHHHHHTC
T ss_pred HhCCCCCHHHHHHHHHHc
Confidence 447899999999999865
No 105
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=63.42 E-value=4 Score=51.51 Aligned_cols=25 Identities=16% Similarity=0.507 Sum_probs=23.0
Q ss_pred CCCccchhhHHHHHHHhCCHHHHHH
Q psy2882 958 GVKKIGPKTAVKLLNQYNSLENIIN 982 (1428)
Q Consensus 958 GvpGIG~KtA~kLL~~~gsle~i~~ 982 (1428)
||||||+++|.+|++.|||+++|.+
T Consensus 511 GI~~VG~~~Ak~La~~Fgsl~~l~~ 535 (667)
T 1dgs_A 511 GLPGVGEVLARNLARRFGTMDRLLE 535 (667)
T ss_dssp TCSSCCHHHHHHHHHTTSBHHHHTT
T ss_pred ccCCccHHHHHHHHHHcCCHHHHHh
Confidence 7899999999999999999998854
No 106
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=63.27 E-value=3.2 Score=39.53 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=25.8
Q ss_pred CCCCCccchhhHHHHHHH--hCCHHHHHHHhhhcchhhhhhHHH
Q psy2882 956 LPGVKKIGPKTAVKLLNQ--YNSLENIINNANNIKGVIGKNLRF 997 (1428)
Q Consensus 956 ipGvpGIG~KtA~kLL~~--~gsle~i~~~~~~i~~k~~~~l~~ 997 (1428)
+.-+|||||++|.++++. |.|++++. ++..+..+.-++++.
T Consensus 28 L~~lpGIG~~~A~~IV~~GpF~s~edL~-~V~Gig~~~~e~l~~ 70 (97)
T 3arc_U 28 FIQYRGLYPTLAKLIVKNAPYESVEDVL-NIPGLTERQKQILRE 70 (97)
T ss_dssp GGGSTTCTTHHHHHHHHHCCCSSGGGGG-GCTTCCHHHHHHHHH
T ss_pred HhHCCCCCHHHHHHHHHcCCCCCHHHHH-hccCCCHHHHHHHHH
Confidence 345799999999999983 44666664 333344444444443
No 107
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=62.39 E-value=4.8 Score=50.22 Aligned_cols=28 Identities=36% Similarity=0.501 Sum_probs=23.8
Q ss_pred CCCCccchhhHHHHHHH-hCCHHHHHHHh
Q psy2882 957 PGVKKIGPKTAVKLLNQ-YNSLENIINNA 984 (1428)
Q Consensus 957 pGvpGIG~KtA~kLL~~-~gsle~i~~~~ 984 (1428)
-.|+|||||||.+|+++ +.|++++.+++
T Consensus 100 ~~v~GVGpk~A~~i~~~G~~s~edL~~a~ 128 (578)
T 2w9m_A 100 LGVRGLGPKKIRSLWLAGIDSLERLREAA 128 (578)
T ss_dssp TTSTTCCHHHHHHHHHTTCCSHHHHHHHH
T ss_pred hCCCCcCHHHHHHHHHcCCCCHHHHHHHH
Confidence 35899999999999987 45899998864
No 108
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=61.16 E-value=4.1 Score=47.83 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.4
Q ss_pred CCCccchhhHHHHHHHhC--CHHHHHH
Q psy2882 958 GVKKIGPKTAVKLLNQYN--SLENIIN 982 (1428)
Q Consensus 958 GvpGIG~KtA~kLL~~~g--sle~i~~ 982 (1428)
.|||||||||.+|.++ | |+|++..
T Consensus 106 ~I~GvG~kta~~l~~~-Gi~tledL~~ 131 (360)
T 2ihm_A 106 QVFGVGVKTANRWYQE-GLRTLDELRE 131 (360)
T ss_dssp TSTTCCHHHHHHHHHT-TCCSHHHHHT
T ss_pred CCCCCCHHHHHHHHHc-CCCCHHHHHh
Confidence 6899999999999988 6 8999983
No 109
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=60.96 E-value=4.2 Score=47.68 Aligned_cols=26 Identities=15% Similarity=0.319 Sum_probs=24.4
Q ss_pred CCCccchhhHHHHHHHhCCHHHHHHH
Q psy2882 958 GVKKIGPKTAVKLLNQYNSLENIINN 983 (1428)
Q Consensus 958 GvpGIG~KtA~kLL~~~gsle~i~~~ 983 (1428)
.||+||++.|.+|+++|||+++|+++
T Consensus 319 ~IPrl~~~iae~Lv~~FGsLq~Il~A 344 (377)
T 3c1y_A 319 TVARIPLSIGYNVVRMFKTLDQISKA 344 (377)
T ss_dssp HTSCCCHHHHHHHHHHHCSHHHHTTC
T ss_pred hCCCCCHHHHHHHHHHhCCHHHHHhC
Confidence 57999999999999999999999976
No 110
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=59.93 E-value=22 Score=42.33 Aligned_cols=87 Identities=18% Similarity=0.115 Sum_probs=59.2
Q ss_pred HHHHHHcCCCceEEEEcchhhhHHHHHHHHHHccccchhhhhhcCCCCCchhhHHHHHHHhCCCCcCCCCCCCCCCCCCh
Q psy2882 389 IIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKL 468 (1428)
Q Consensus 389 ~i~~~~~~~~~~~VGyN~i~FD~~flr~~f~Rn~~~~y~~~~~~g~sr~D~ld~~rl~~~l~p~~~~~p~~~~g~~s~kL 468 (1428)
.+...|..++..-|||| +++|..+|.+. .++.+ -.++|+.-+++.+.+. ++.|
T Consensus 150 ~L~~lL~d~~i~KV~h~-~k~Dl~~L~~~---~Gi~~-----------~~~fDt~lAa~LL~~~------------~~~L 202 (410)
T 2hbj_A 150 ILNEVFTNPSIVKVFHG-AFMDIIWLQRD---LGLYV-----------VGLFDTYHASKAIGLP------------RHSL 202 (410)
T ss_dssp GGHHHHTCTTSEEEESS-CHHHHHHHHHH---HCCCC-----------SSEEEHHHHHHHHTCS------------CCSH
T ss_pred HHHHHHcCCCceEEEEe-hHHHHHHHHHH---cCCCc-----------CCEEEcHHHHHHhCCC------------ccCH
Confidence 35567777777789988 79999887532 12221 0146777888888541 4889
Q ss_pred HhHHHHc-CCCCCCCC----------------ChHHHHHHHHHHHHHHHhh
Q psy2882 469 EHLSFVN-NLSHKKAH----------------DALSDVRATLGLARLIRNN 502 (1428)
Q Consensus 469 e~L~~~~-gi~~~~AH----------------dAlaDv~AT~~l~~~l~~~ 502 (1428)
+.|++.+ |+..+..+ =|..||.++..|+..|.++
T Consensus 203 ~~L~~~~lg~~l~K~~~~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~ 253 (410)
T 2hbj_A 203 AYLLENFANFKTSKKYQLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNK 253 (410)
T ss_dssp HHHHHHHSCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987 76543222 1668999998888877654
No 111
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=59.82 E-value=1.9 Score=53.83 Aligned_cols=27 Identities=26% Similarity=0.546 Sum_probs=0.0
Q ss_pred CCCCccchhhHHHHHHHhCCHHHHHHH
Q psy2882 957 PGVKKIGPKTAVKLLNQYNSLENIINN 983 (1428)
Q Consensus 957 pGvpGIG~KtA~kLL~~~gsle~i~~~ 983 (1428)
=||||||+++|..|++.|||+++|.++
T Consensus 532 LGIp~VG~~~ak~La~~Fgsle~L~~A 558 (615)
T 3sgi_A 532 LSIRHVGPTAARALATEFGSLDAIAAA 558 (615)
T ss_dssp ---------------------------
T ss_pred cCCCCCCHHHHHHHHHHcCCHHHHHhC
Confidence 489999999999999999999998865
No 112
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=58.93 E-value=6.3 Score=42.81 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=17.0
Q ss_pred CCccchhhHHHHHHHhCC
Q psy2882 959 VKKIGPKTAVKLLNQYNS 976 (1428)
Q Consensus 959 vpGIG~KtA~kLL~~~gs 976 (1428)
|+|||||+|..+|..||.
T Consensus 93 v~GIGpk~A~~Ils~~~~ 110 (212)
T 2ztd_A 93 VSGVGPRLAMAALAVHDA 110 (212)
T ss_dssp STTCCHHHHHHHHHHSCH
T ss_pred cCCcCHHHHHHHHHhCCH
Confidence 999999999999999984
No 113
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster}
Probab=50.78 E-value=23 Score=47.27 Aligned_cols=187 Identities=11% Similarity=0.099 Sum_probs=99.2
Q ss_pred HhhhhhccchhhhhhhccCCcCcCCCCccchHHHHHHHHHHHHHHhcCCCE-EEEEEeCCCCCc-----ccCCChhhhcC
Q psy2882 774 LMYGKIDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATY-IACIFDAKGKNF-----RNILYPSYKAT 847 (1428)
Q Consensus 774 ~~Y~~i~g~~~~~Ra~~a~~~l~~~~G~~t~av~gf~~~l~~l~~~~~p~~-~v~~fD~~~~~f-----R~~l~p~YKa~ 847 (1428)
.+++-.|-+++||-+.+....-.......-.....+++.+.+++...+|.. +++|+||-.|.- |..-+...+..
T Consensus 29 ~DnLYlDmNgIIH~c~h~~~~~~~~~~~e~e~~~~if~yid~l~~~vrPrkll~iAiDGvAPrAKmnqQR~RRfrsa~~~ 108 (1140)
T 2y35_A 29 FDNLYLDMNGIVHNCSHPDDNNIHFHLEEEQIFQEIFNYVDKLFYLIKPQRLFFLSVDGVAPRAKMNQQRSRRFRTAREA 108 (1140)
T ss_dssp CSEEEEEHHHHHHHHHCC------CCCCHHHHHHHHHHHHHHHHHHHCCSSEEEEECCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEecchhhhhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHheeccceeEEEEecCCCchhHHHHHHHHHhhhhhhh
Confidence 345557889999998886321000001112334445666666777778865 789999865521 11111111100
Q ss_pred ---------C----C--C------CC-----hHHHHHHHH-HHHHHHH----cCCcEEEe----cchhhHHHHHHHHHHH
Q psy2882 848 ---------R----K--K------MP-----YNLILQINL-IHQMVKA----IGWPILII----KGVEADDVIGTLAKQA 892 (1428)
Q Consensus 848 ---------R----~--~------~p-----~~l~~q~~~-i~~~l~~----~gi~~i~~----~g~EADD~iatla~~~ 892 (1428)
+ + . +| ..|..++.+ ++.-+.. -++.+|.. || |++==|--..+..
T Consensus 109 ~~~~~~~~~~g~~~~~~~fdsn~ITPGT~FM~~l~~~L~~~i~~k~~~d~~w~~~~Vi~S~~~vPG-EGEhKIm~~IR~~ 187 (1140)
T 2y35_A 109 EQQEAKAAQRGELREHERFDSNCITPGTEFMVRLQEGLRAFLKTKISTDPLWQRCTVILSGQEAPG-EGEHKIMDYIRYM 187 (1140)
T ss_dssp HHHHHHHHHC-------CCCSGGGSTTSHHHHHHHHHHHHHHHHHHHHCGGGSSSEEEEECSSSCS-CHHHHHHHHHHHH
T ss_pred hhhHHHHhhcCCccccccCCccccCCCcHHHHHHHHHHHHHHHHHhccCccccceEEEEeCCCCCC-chHHHHHHHHHHH
Confidence 0 0 0 12 112222222 3222211 25666654 68 9998777777654
Q ss_pred hhh----CCCEEEEEeCCCCcccc--c--cCcEEEEeCCe-----------------eccHHHH----HHHh--------
Q psy2882 893 VTK----HNLKVIISTNDKDMAQL--V--SNKIALINNNK-----------------IHDRTTI----ISRF-------- 935 (1428)
Q Consensus 893 ~~~----~~~~v~IvS~DkDl~QL--v--~~~v~~~~~~~-----------------~~~~~~v----~~~~-------- 935 (1428)
... .+..++|++.|-||.-| . .+|+.+++... .++...+ ...+
T Consensus 188 ~~~p~~~pn~~HciyG~DADLImL~L~the~~f~ilRe~v~f~~~~~~~~~~~~~f~~l~i~~lReyL~~ef~~~~~~~~ 267 (1140)
T 2y35_A 188 KTQPDYDPNTRHCLYGLDAALIILGLCTHELHFVVLREEVKFGRNVKRTSVEETRFFLLHLGLLREYLELEFDALRTDEH 267 (1140)
T ss_dssp HHSTTCCTTCCEEEECCSHHHHHHHHHTTCSSEEEEEESSCTTCCTTCCCGGGCEEEEEEHHHHHHHHHHHGGGGCCSSS
T ss_pred hhCCCCCCCCeEEEEccCHhHHHHHHccCCCcEEEeecccccccccccccccccceEEEEehHHHHHHHHHhhhhccccc
Confidence 332 34678899999997644 2 36788876210 1111111 1111
Q ss_pred CCChhh----HHhhhhccccccCCCCCCCccc
Q psy2882 936 GVSPEK----IVDYFSLIGDMSDNLPGVKKIG 963 (1428)
Q Consensus 936 Gv~p~q----~~d~~aL~GD~sDnipGvpGIG 963 (1428)
....++ |+-+|.|+| -|.+|++|++.
T Consensus 268 ~~d~eriidDfVfl~fl~G--NDFLP~lp~l~ 297 (1140)
T 2y35_A 268 KLDIAQLIDDWVLMGFLVG--NDFIPHLPCLH 297 (1140)
T ss_dssp CCCHHHHHHHHHHHHHHHC--CTTSCCCTTCC
T ss_pred cccHHHHHHHHHHHHHHhC--CccCCCCCccc
Confidence 223344 566788999 79999999986
No 114
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=50.67 E-value=7.8 Score=45.00 Aligned_cols=26 Identities=38% Similarity=0.395 Sum_probs=23.1
Q ss_pred CCCccchhhHHHHHHHhC--CHHHHHHHh
Q psy2882 958 GVKKIGPKTAVKLLNQYN--SLENIINNA 984 (1428)
Q Consensus 958 GvpGIG~KtA~kLL~~~g--sle~i~~~~ 984 (1428)
.|||||||||.+|-++ | |+|++.++.
T Consensus 100 ~v~GiG~k~a~~l~~~-Gi~tledL~~a~ 127 (335)
T 2bcq_A 100 NIWGAGTKTAQMWYQQ-GFRSLEDIRSQA 127 (335)
T ss_dssp TSTTCCHHHHHHHHHT-TCCSHHHHHHHC
T ss_pred cCCCcCHHHHHHHHHc-CCCCHHHHHHHh
Confidence 7999999999999987 6 899998764
No 115
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=48.96 E-value=7.7 Score=45.85 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.7
Q ss_pred CCCccchhhHHHHHHHhC--CHHHHHH
Q psy2882 958 GVKKIGPKTAVKLLNQYN--SLENIIN 982 (1428)
Q Consensus 958 GvpGIG~KtA~kLL~~~g--sle~i~~ 982 (1428)
+|+|||||||.+|.++ | |+|++.+
T Consensus 125 ~I~GvGpk~a~~ly~~-Gi~tledL~~ 150 (381)
T 1jms_A 125 SVFGVGLKTAEKWFRM-GFRTLSKIQS 150 (381)
T ss_dssp TSTTCCHHHHHHHHHT-TCCSHHHHHH
T ss_pred ccCCCCHHHHHHHHHc-CCCcHHHHHh
Confidence 6899999999999988 6 8999986
No 116
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=48.11 E-value=12 Score=46.64 Aligned_cols=27 Identities=37% Similarity=0.459 Sum_probs=22.0
Q ss_pred CCCccchhhHHHHHHH--hCCHHHHHHHh
Q psy2882 958 GVKKIGPKTAVKLLNQ--YNSLENIINNA 984 (1428)
Q Consensus 958 GvpGIG~KtA~kLL~~--~gsle~i~~~~ 984 (1428)
+|+|||||||.+++.. +-|++++..++
T Consensus 97 ~v~GvGpk~A~~~~~~lg~~~~~~l~~a~ 125 (575)
T 3b0x_A 97 EVPGVGPKTARLLYEGLGIDSLEKLKAAL 125 (575)
T ss_dssp TSTTTCHHHHHHHHHTSCCCSHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4788999999999987 46888888765
No 117
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=45.55 E-value=7.3 Score=36.84 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=15.9
Q ss_pred CCCCCccchhhHHHHHHHh
Q psy2882 956 LPGVKKIGPKTAVKLLNQY 974 (1428)
Q Consensus 956 ipGvpGIG~KtA~kLL~~~ 974 (1428)
+-.|||||+++|.++++.+
T Consensus 42 L~~ipGIG~~~A~~Il~~r 60 (98)
T 2edu_A 42 LRSLQRIGPKKAQLIVGWR 60 (98)
T ss_dssp HHHSTTCCHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHH
Confidence 3468899999999999866
No 118
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=45.52 E-value=14 Score=45.98 Aligned_cols=27 Identities=26% Similarity=0.477 Sum_probs=24.3
Q ss_pred CCCCccchhhHHHHHHHhCCHHHHHHH
Q psy2882 957 PGVKKIGPKTAVKLLNQYNSLENIINN 983 (1428)
Q Consensus 957 pGvpGIG~KtA~kLL~~~gsle~i~~~ 983 (1428)
=|||+||+++|..|.+.|||++++.+.
T Consensus 515 LGI~~vG~~~a~~La~~f~sl~~l~~a 541 (586)
T 4glx_A 515 LGIREVGEATAAGLAAYFGTLEALEAA 541 (586)
T ss_dssp TTCTTCCHHHHHHHHHHHCSHHHHHHC
T ss_pred cCCCchhHHHHHHHHHHcCCHHHHHcc
Confidence 378999999999999999999999764
No 119
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=40.72 E-value=15 Score=43.36 Aligned_cols=40 Identities=23% Similarity=0.503 Sum_probs=31.9
Q ss_pred ChhhHHhhhhccccccCCCCCCCccchhhHHHHHHHhCCHHHHHHHhh
Q psy2882 938 SPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNAN 985 (1428)
Q Consensus 938 ~p~q~~d~~aL~GD~sDnipGvpGIG~KtA~kLL~~~gsle~i~~~~~ 985 (1428)
+.++...++.|.- +||||++++.+||+.|||.+++++...
T Consensus 18 ~~~e~~~wL~L~~--------~~gvG~~~~~~Ll~~fgs~~~~~~a~~ 57 (382)
T 3maj_A 18 TEAQRIDWMRLIR--------AENVGPRTFRSLINHFGSARAALERLP 57 (382)
T ss_dssp CHHHHHHHHHHHT--------STTCCHHHHHHHHHHHSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHc--------CCCCCHHHHHHHHHHcCCHHHHHHcCH
Confidence 3445556666753 789999999999999999999998653
No 120
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=36.83 E-value=1e+02 Score=41.21 Aligned_cols=183 Identities=15% Similarity=0.184 Sum_probs=96.8
Q ss_pred hhhhccchhhhhhhccCCcCcCCCCccchHHHHHHHHHHHHHHhcCCCE-EEEEEeCCCCCcccCCChh----h------
Q psy2882 776 YGKIDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATY-IACIFDAKGKNFRNILYPS----Y------ 844 (1428)
Q Consensus 776 Y~~i~g~~~~~Ra~~a~~~l~~~~G~~t~av~gf~~~l~~l~~~~~p~~-~v~~fD~~~~~fR~~l~p~----Y------ 844 (1428)
.+=.|=|++||.+.+.-.......-..-..+..++..|.+++...+|.. +.+|+||-.| |.++..+ |
T Consensus 31 nLYlDmNgIIH~c~h~~~~~~~~~~te~e~~~~if~yid~l~~~vrPrkllyiAiDGVAP--rAKmnqQR~RRfrsa~~~ 108 (1155)
T 3pie_A 31 NLYLDMNSILHNCTHGDGSEVNSRLSEEEVYSKIFSYIDHLFHTIKPKQTFYMAIDGVAP--RAKMNQQRARRFRTAMDA 108 (1155)
T ss_pred eEEEecccceeeeecCCCCccccCCCHHHHHHHHHHHHHHHHHhcCcceEEEEEecCCCC--hhHHHHHHHHHHHhhhhh
Confidence 3447889999999886421100000111233345666666667778876 5699998644 2222211 1
Q ss_pred -----hcCCC--CCC-----------------hHHHHHHH-HHHHHHHH-c---CCcEEEe----cchhhHHHHHHHHHH
Q psy2882 845 -----KATRK--KMP-----------------YNLILQIN-LIHQMVKA-I---GWPILII----KGVEADDVIGTLAKQ 891 (1428)
Q Consensus 845 -----Ka~R~--~~p-----------------~~l~~q~~-~i~~~l~~-~---gi~~i~~----~g~EADD~iatla~~ 891 (1428)
|+-+. ..| ..|..++. +|.+-+.. - ++.+|.. || |++==|--..+.
T Consensus 109 ~~~~~~~~~~g~~~~~~~~fdsn~ITPGT~FM~~L~~~L~~~i~~k~~~d~~w~~~~vi~S~~~vPG-EGEhKIm~~IR~ 187 (1155)
T 3pie_A 109 EKALQKAIENGDELPKGEPFDSNAITPGTEFMAKLTENLKYFIHDKITNDTRWQNVKVIFSGHEVPG-EGQHKIMDYIRA 187 (1155)
T ss_pred hHHHHHHHhcCCcCCcccccccccccCCcHHHHHHHHHHHHHHHHHhhCCcCccccEEEEeCCCCCC-ccHHHHHHHHHH
Confidence 11000 111 12222222 12222211 1 3445543 68 999888877776
Q ss_pred Hhhh----CCCEEEEEeCCCCcccc--c--cCcEEEEeCCe------------------eccHHHHH----HHh------
Q psy2882 892 AVTK----HNLKVIISTNDKDMAQL--V--SNKIALINNNK------------------IHDRTTII----SRF------ 935 (1428)
Q Consensus 892 ~~~~----~~~~v~IvS~DkDl~QL--v--~~~v~~~~~~~------------------~~~~~~v~----~~~------ 935 (1428)
.... .+..++|++.|-||.-| . .+|+++++... .+...-+. ..+
T Consensus 188 ~r~~p~y~pn~~H~IyG~DADLImL~L~thep~f~iLRe~v~f~~~~~~~~~~~~~~f~~l~i~~LREyL~~ef~~~~~~ 267 (1155)
T 3pie_A 188 IRAQEDYNPNTRHCIYGLDADLIILGLSTHDHHFCLLREEVTFGKRSSSVKTLETQNFFLLHLSILREYLALEFEEITDS 267 (1155)
T ss_pred hccCCCCCCCCeEEEeccChhHHHhhhccCCCcEEEEeeccccCcccccccccccCCeEEEEHHHHHHHHHHHHHhhccc
Confidence 4322 34678999999997644 3 35777765210 12221111 111
Q ss_pred ---CCChh----hHHhhhhccccccCCCCCCCccc
Q psy2882 936 ---GVSPE----KIVDYFSLIGDMSDNLPGVKKIG 963 (1428)
Q Consensus 936 ---Gv~p~----q~~d~~aL~GD~sDnipGvpGIG 963 (1428)
...-+ -|+-+|.|+| -|-+|.+|.+.
T Consensus 268 ~~~~~d~ERiiDDfVflcf~vG--NDFLPhlP~l~ 300 (1155)
T 3pie_A 268 VQFEYDFERVLDDFIFVLFTIG--NDFLPNLPDLH 300 (1155)
T ss_pred cCCCccHhHhhcceeeehhhhC--cccCCCCCccC
Confidence 11222 3566888999 79999999885
No 121
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=34.28 E-value=21 Score=38.55 Aligned_cols=69 Identities=14% Similarity=0.176 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhcCCCEEEEEEeCCCCCcccCCChhhhcCCCCCChHHHHHHHHHHHHHHHcCCcEEEecc-hhhHHHHHH
Q psy2882 809 TIKMLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKG-VEADDVIGT 887 (1428)
Q Consensus 809 f~~~l~~l~~~~~p~~~v~~fD~~~~~fR~~l~p~YKa~R~~~p~~l~~q~~~i~~~l~~~gi~~i~~~g-~EADD~iat 887 (1428)
+...+.++.+.++ +.++..-+.... ..| .-.|+.+...+ ..+.-..|++++...+ .|+=.+++.
T Consensus 68 l~~Q~~~l~~~~~--~~~lliE~d~~~------~~~----~~~~~~i~~~l---~~~~~~~~~~vi~t~s~~eta~~l~~ 132 (219)
T 2bgw_A 68 LFEQASRLAEHYE--TVFIIVEGPPVP------RRY----RGRERSLYAAM---AALQLDYGIRLMNTMDPKGTALVIES 132 (219)
T ss_dssp HHHHHHHHHHHCS--EEEEEEESCSSC------GGG----TTTHHHHHHHH---HHHHHHSCCEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CcEEEEEecCcc------ccc----cCCHHHHHHHH---HHHHHHCCceEEEcCCHHHHHHHHHH
Confidence 4556666666644 333333332111 233 22355664433 3333456999999865 455678888
Q ss_pred HHHHH
Q psy2882 888 LAKQA 892 (1428)
Q Consensus 888 la~~~ 892 (1428)
+++..
T Consensus 133 l~~~~ 137 (219)
T 2bgw_A 133 LARLS 137 (219)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88764
No 122
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=33.30 E-value=54 Score=39.22 Aligned_cols=73 Identities=22% Similarity=0.220 Sum_probs=49.8
Q ss_pred ceEEEEeeccccCccCC---------C----------------cceeEEEEEEeCCce---eeccceEEEEecCCCCCC-
Q psy2882 311 STFLWYDYETFGLNVRR---------D----------------RPFQFAAIRTDIMLN---TIDNPIMLYCKPAPDFLP- 361 (1428)
Q Consensus 311 ~~~v~~D~ETTGldp~~---------D----------------rIiqiaaIr~~~~~~---~i~~~~~~~~~p~~~~~p- 361 (1428)
-+||.+|+|-||+..+. | .|||+|.--.+.+++ ....+|+|++-|.+.-..
T Consensus 22 ~~fVAiD~Ef~Gi~~~~~~~~~~~~~~s~e~~Y~~lr~nv~~~~iiQlGlt~f~~~~~~~~~~~~~fNF~~FP~~~~~~~ 101 (430)
T 2a1r_A 22 ADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKPFNRSS 101 (430)
T ss_dssp CSEEEEEEEESCSCSSSCC-----CCCCHHHHHHHHHHHTTTBCEEEEEEEEEEEETTTTEEEEEEEEEEBCCCCSSSSS
T ss_pred CCEEEEeeeeccccCCCccccccccCCCHHHHHHHHHHHHhhcceeeEEEEEEeecCCCCceeEEEEEEEeccccccccc
Confidence 47999999999996431 1 379999777665432 345678999887542211
Q ss_pred -------ChhhH---hhcCCCHHHHhcCCCCh
Q psy2882 362 -------DPRAC---LITKITPQFCLNNGIPE 383 (1428)
Q Consensus 362 -------~pea~---~itGITpe~~~~~g~~e 383 (1428)
.++++ .-||+.-+.....|++-
T Consensus 102 ~~~~~~~~~~Si~fL~~~GfDFnk~~~~GI~y 133 (430)
T 2a1r_A 102 PDVKFVCQSSSIDFLASQGFDFNKVFRNGIPY 133 (430)
T ss_dssp CCCEEEEEHHHHHHHHHTTCCHHHHHTTCBCB
T ss_pred cchhhhccHHHHHHHHHcCCChhhHhhcCcCc
Confidence 23443 34899988888888875
No 123
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=33.17 E-value=17 Score=39.33 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=19.2
Q ss_pred cCCCCCCCccchhhHHHHHHHhC
Q psy2882 953 SDNLPGVKKIGPKTAVKLLNQYN 975 (1428)
Q Consensus 953 sDnipGvpGIG~KtA~kLL~~~g 975 (1428)
..-+-.|||||+|||.+++.++.
T Consensus 122 ~~~L~~vpGIG~KtA~rIi~elk 144 (212)
T 2ztd_A 122 VAALTRVPGIGKRGAERMVLELR 144 (212)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHT
T ss_pred HHHHhhCCCCCHHHHHHHHHHHH
Confidence 44567899999999999998874
No 124
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=31.13 E-value=84 Score=40.85 Aligned_cols=159 Identities=8% Similarity=-0.104 Sum_probs=88.2
Q ss_pred eeecccHHHHHHHHHHCCceecCcceecCCcccccccceeeeeeeccCCceEEEEeeccccCccCCCcc-eeEEEEEEeC
Q psy2882 262 LFGSVTNSDIVKELEKKGLKIEKNKIKLPNNSIKKIGNYYIDILLHNGNSTFLWYDYETFGLNVRRDRP-FQFAAIRTDI 340 (1428)
Q Consensus 262 lfgsVt~~~I~~~l~~~gi~v~~~~I~l~~~pIk~~G~~~V~v~l~~~~~~~v~~D~ETTGldp~~DrI-iqiaaIr~~~ 340 (1428)
-++......+.+-|++.++.--.+.+.-...+-. .+|.+ |. .....++.+|+|||| +-.+++ ++|+ + .
T Consensus 260 ~~~~~d~~~l~~~~~~~~f~~~~~~~~~~~~~~~--~~~~~-~~--~~~~~~va~d~et~~--~~~~~l~vg~a---~-~ 328 (832)
T 1bgx_T 260 KRREPDRERLRAFLERLEFGSLLHEFGLLESPKA--LEEAP-WP--PPEGAFVGFVLSRKE--PMWADLLALAA---A-R 328 (832)
T ss_dssp CCCCCCHHHHHHHHTTTTCCSTTCCSCCCCCCSC--CEEEC-SS--CCTTCCBEEECSSSC--TTTCCCCEEEC---B-S
T ss_pred HcCCccHHHHHHHHHHcCCHHHHHhhccccCCCc--CceeE-ee--ccCCceEEEEEecCC--cccCceeEEEE---E-c
Confidence 3456677788888865566422333310000000 12331 11 123467899999999 556777 4422 1 1
Q ss_pred CceeeccceEEEEecCCCCCCChhhHhhcCCCHHHHhcCCCChHHHHHHHHHHHcCCCceEEEEcchhhhHHHHHHHHHH
Q psy2882 341 MLNTIDNPIMLYCKPAPDFLPDPRACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWR 420 (1428)
Q Consensus 341 ~~~~i~~~~~~~~~p~~~~~p~pea~~itGITpe~~~~~g~~e~e~~~~i~~~~~~~~~~~VGyN~i~FD~~flr~~f~R 420 (1428)
++ + .+|+ |- | + ..+..+|..++ + | +.||..+|.+
T Consensus 329 ~g----~--a~yv-------p~------~---------------~--~~Lk~lLed~~-i----n-~K~d~~~L~~---- 362 (832)
T 1bgx_T 329 GG----R--VHRA-------PE------P---------------Y--KALRDLKEARG-L----L-AKDLSVLALR---- 362 (832)
T ss_dssp SS----E--EECC-------SC------H---------------H--HHHHHCSSBCB-T----T-HHHHHHHHHH----
T ss_pred CC----C--EEEE-------EC------C---------------H--HHHHHHHhCCC-C----C-hHHHHHHHHH----
Confidence 11 1 1222 21 1 0 23555566552 2 4 8999888753
Q ss_pred ccccchhhhhhcCCCCCchhhHHHHHHHhCCCCcCCCCCCCCCCCCChHhHHHHcCCCCCCCCChHHHHHHHHHHHHHHH
Q psy2882 421 NLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRATLGLARLIR 500 (1428)
Q Consensus 421 n~~~~y~~~~~~g~sr~D~ld~~rl~~~l~p~~~~~p~~~~g~~s~kLe~L~~~~gi~~~~AHdAlaDv~AT~~l~~~l~ 500 (1428)
+++.. . -..|++-++|.+.|. ++.|++|+..||-... -+...||.+|.+|+..+.
T Consensus 363 ~Gi~~----------~-~~~Dt~laayLl~p~------------~~~l~~l~~~~gk~~~--~~ya~da~~~~~l~~~l~ 417 (832)
T 1bgx_T 363 EGLGL----------P-PGDDPMLLAYLLDPS------------NTTPEGVARRYGGEWT--EEAGERAALSERLFANLW 417 (832)
T ss_dssp HTCCC----------C-BCCCHHHHHHHHCTT------------CCSTTHHHHHHSCCCC--SSHHHHHHHHHHHHHHHH
T ss_pred cCCcc----------C-cccCHHHHHHHcCCC------------CCCHHHHHHHhCCCch--HHHHHHHHHHHHHHHHHH
Confidence 33332 1 126888889999662 5889999999974211 112368888888888776
Q ss_pred hh
Q psy2882 501 NN 502 (1428)
Q Consensus 501 ~~ 502 (1428)
.+
T Consensus 418 ~~ 419 (832)
T 1bgx_T 418 GR 419 (832)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 125
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=29.93 E-value=39 Score=41.96 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=17.2
Q ss_pred CCCCCccchhhHHHHHHHhCC
Q psy2882 956 LPGVKKIGPKTAVKLLNQYNS 976 (1428)
Q Consensus 956 ipGvpGIG~KtA~kLL~~~gs 976 (1428)
+..+||||+|||.+++.+...
T Consensus 130 l~~~~GiG~k~a~~i~~~l~~ 150 (575)
T 3b0x_A 130 LTRLKGFGPKRAERIREGLAL 150 (575)
T ss_dssp GGGSTTCCHHHHHHHHHHHHH
T ss_pred cccCCCCCccHHHHHHHHHHH
Confidence 778999999999999665443
No 126
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=29.41 E-value=19 Score=38.31 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=19.9
Q ss_pred ccCCCCCCCccchhhHHHHHHHhC
Q psy2882 952 MSDNLPGVKKIGPKTAVKLLNQYN 975 (1428)
Q Consensus 952 ~sDnipGvpGIG~KtA~kLL~~~g 975 (1428)
+.+-+..|||||+|||.+++.++.
T Consensus 105 d~~~L~~vpGIG~K~A~rI~~~lk 128 (191)
T 1ixr_A 105 DARLLTSASGVGRRLAERIALELK 128 (191)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHHHT
T ss_pred CHHHHHhCCCCCHHHHHHHHHHHH
Confidence 355678999999999999987764
No 127
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=29.09 E-value=29 Score=39.53 Aligned_cols=31 Identities=10% Similarity=0.351 Sum_probs=27.9
Q ss_pred CCCccchhhHHHHHHHhCCHHHHHHHhhhcc
Q psy2882 958 GVKKIGPKTAVKLLNQYNSLENIINNANNIK 988 (1428)
Q Consensus 958 GvpGIG~KtA~kLL~~~gsle~i~~~~~~i~ 988 (1428)
-||||+++.|..++++|+|+..++++..+..
T Consensus 241 ~IpGVs~~~A~~I~~~ypTp~~L~~Ay~~~~ 271 (311)
T 2ziu_A 241 QISGVSGDKAAAVLEHYSTVSSLLQAYDKCS 271 (311)
T ss_dssp TBTTCCHHHHHHHHHHCSSHHHHHHHHHHCS
T ss_pred hccCCCHHHHHHHHHHCCCHHHHHHHHHhcC
Confidence 4799999999999999999999999987653
No 128
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=28.62 E-value=1.2e+02 Score=33.18 Aligned_cols=67 Identities=10% Similarity=0.057 Sum_probs=36.5
Q ss_pred CCCEEEEEEeCCCCCcccCCChhhhcCCCCCChHHHHHHHHHHHHHHHcCCcEEEe----------cchhhHHHHHHHHH
Q psy2882 821 RATYIACIFDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILII----------KGVEADDVIGTLAK 890 (1428)
Q Consensus 821 ~p~~~v~~fD~~~~~fR~~l~p~YKa~R~~~p~~l~~q~~~i~~~l~~~gi~~i~~----------~g~EADD~iatla~ 890 (1428)
-|.||+++.||-+.-=|+.-.|...++|... . .+..+-+.+..+||+++.. |--|=+.++.-+..
T Consensus 6 ~P~HVAiIMDGNrRwAk~rgl~r~~GH~~G~----~-~~~~i~~~c~~lGI~~lTlYaFStENw~Rp~~EV~~Lm~L~~~ 80 (225)
T 3ugs_B 6 ELKHLAVVMDGNRRWARAKGFLAKLGYSQGV----K-TMQKLMEVCMEENISNLSLFAFSTENWKRPKDEIDFIFELLDR 80 (225)
T ss_dssp CCCEEEEEECCCC--------------CHHH----H-HHHHHHHHHHHTTCCEEEEEEEESGGGGSCHHHHHHHHHHHHH
T ss_pred CCCeEEEeccCcHHHHHHCCCCHHHHHHHHH----H-HHHHHHHHHHHcCCCEEEEEEEcccccCCCHHHHHHHHHHHHH
Confidence 5899999999854333555567666666532 1 2334445677789999886 45678878776665
Q ss_pred HH
Q psy2882 891 QA 892 (1428)
Q Consensus 891 ~~ 892 (1428)
..
T Consensus 81 ~l 82 (225)
T 3ugs_B 81 CL 82 (225)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 129
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=26.56 E-value=1.7e+02 Score=23.89 Aligned_cols=44 Identities=20% Similarity=0.302 Sum_probs=30.2
Q ss_pred CCCCCHHHHHHHHHHHHHHcccCCCccccHHHHHHHHHHHHhhcCcchHHHHHHHHhhhhhccc
Q psy2882 719 IETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGKIDGS 782 (1428)
Q Consensus 719 p~~L~~~e~~~w~~~~~~rl~~~~~~~~~~~~~~~~i~~L~~~~~~~~~~lL~~L~~Y~~i~g~ 782 (1428)
|.+.+..+.++|++-+ |+++..+|+.+ |..|++++..++.--|+
T Consensus 1 ~~~~~~~dle~~KqEI-------------L~E~RkElqK~-------K~EIIeAi~~El~~~~~ 44 (45)
T 1use_A 1 PSSSDYSDLQRVKQEL-------------LEEVKKELQKV-------KEEIIEAFVQELRKRGS 44 (45)
T ss_dssp --CCCHHHHHHHHHHH-------------HHHHHHHHHHH-------HHHHHHHHHHHHHHC--
T ss_pred CCCCcHHHHHHHHHHH-------------HHHHHHHHHHH-------HHHHHHHHHHHHHhcCC
Confidence 6788888888886642 46777777775 55699999988876654
No 130
>3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A
Probab=24.76 E-value=1.2e+02 Score=32.21 Aligned_cols=101 Identities=18% Similarity=0.199 Sum_probs=55.4
Q ss_pred hhhhhccchhhhhhhccCCcCcCCCCccchHHHHHHHHHHHHHHhcCCCEEEEEEeCCCCCcccCCChhhhcCCCCCC-h
Q psy2882 775 MYGKIDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMP-Y 853 (1428)
Q Consensus 775 ~Y~~i~g~~~~~Ra~~a~~~l~~~~G~~t~av~gf~~~l~~l~~~~~p~~~v~~fD~~~~~fR~~l~p~YKa~R~~~p-~ 853 (1428)
.-+-+||+++.|.. +. ...+ .+.|....+..+.+. +.. .+++|+ ++||++.. |+..+ .
T Consensus 25 R~IVIDGsNVA~~~--g~-----~~~F---s~rgI~~aV~yf~~r-Gh~-~v~Vfv---P~~r~~~~------~~~~~~~ 83 (185)
T 3v32_B 25 RPVVIDGSNVAMSH--GN-----KEVF---SCRGILLAVNWFLER-GHT-DITVFV---PSWRKEQP------RPDVPIT 83 (185)
T ss_dssp CCEEEEHHHHHHHH--TT-----TTSE---EHHHHHHHHHHHHHT-TCC-CEEEEE---EGGGGSCC------CTTSCEE
T ss_pred CeEEEeCHHHHhhh--CC-----CCCc---CHHHHHHHHHHHHHc-CCC-ceEEEe---chHhhhcc------cccCCCC
Confidence 34558999997732 32 1122 334555555555444 222 256687 57886531 22221 1
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEecch--------hhHHHHHHHHHHHhhhCCCEEEEEeCCC
Q psy2882 854 NLILQINLIHQMVKAIGWPILIIKGV--------EADDVIGTLAKQAVTKHNLKVIISTNDK 907 (1428)
Q Consensus 854 ~l~~q~~~i~~~l~~~gi~~i~~~g~--------EADD~iatla~~~~~~~~~~v~IvS~Dk 907 (1428)
+. ..+.++ ...|+-++...+. .+|-.|-.+|... . .+|||.|+
T Consensus 84 d~----~~L~~L-~~~g~l~~TPs~~~~g~~~~~ydD~~il~~A~~~---~---g~IVSND~ 134 (185)
T 3v32_B 84 DQ----HILREL-EKKKILVFTPSRRVGGKRVVCYDDRFIVKLAYES---D---GIVVSNDT 134 (185)
T ss_dssp CT----HHHHHH-HHTTCEEEECCCC-------CCHHHHHHHHHHHT---T---CEEECSCC
T ss_pred CH----HHHHHH-HHCCCEEECCCcccCCCcccCccHHHHHHHHHHc---C---CEEEeCcc
Confidence 11 223333 3458877777763 4777788888763 2 36889885
No 131
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=23.46 E-value=30 Score=37.15 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=19.1
Q ss_pred ccCCCCCCCccchhhHHHHHHHh
Q psy2882 952 MSDNLPGVKKIGPKTAVKLLNQY 974 (1428)
Q Consensus 952 ~sDnipGvpGIG~KtA~kLL~~~ 974 (1428)
+.+-+..|||||+|||.+++.++
T Consensus 106 d~~~L~~vpGIG~K~A~rI~~el 128 (203)
T 1cuk_A 106 EVGALVKLPGIGKKTAERLIVEM 128 (203)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CHHHHhhCCCCCHHHHHHHHHHH
Confidence 45567899999999999998765
No 132
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=23.39 E-value=1.5e+02 Score=35.52 Aligned_cols=85 Identities=18% Similarity=0.078 Sum_probs=54.8
Q ss_pred HHHHHHHcCCCceEEEEcchhhhHHHHHHHHHHccccchhhhhhcCCCCCchhhHHHHHHHhCCCCcCCCCCCCCCCCCC
Q psy2882 388 SIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFK 467 (1428)
Q Consensus 388 ~~i~~~~~~~~~~~VGyN~i~FD~~flr~~f~Rn~~~~y~~~~~~g~sr~D~ld~~rl~~~l~p~~~~~p~~~~g~~s~k 467 (1428)
..+...|..+ ..|||| .++|..+++ ++++.+- .+.|+.-+++.+.+ + ++.
T Consensus 85 ~~L~~lL~d~--~KV~h~-~k~Dl~~L~----~~gi~~~-----------~~fDt~lAa~lL~~----------~--~~g 134 (440)
T 3cym_A 85 NDFNRAVGDA--VWILHD-SLQDLPGFD----ELGMEPQ-----------RLFDTEIAARLLGL----------K--RFG 134 (440)
T ss_dssp HHHHHHHTTC--EEEESS-HHHHHHHHH----HHTCCCC-----------EEEEHHHHHHHTTC----------S--SCS
T ss_pred HHHHHHHCCC--CEEEEc-CHHHHHHHH----HcCCcCC-----------ceehHHHHHHHhCC----------C--CCC
Confidence 3456666655 578887 899988764 2333321 23566667777743 1 588
Q ss_pred hHhHHHHc-CCCCCCC----------------CChHHHHHHHHHHHHHHHhh
Q psy2882 468 LEHLSFVN-NLSHKKA----------------HDALSDVRATLGLARLIRNN 502 (1428)
Q Consensus 468 Le~L~~~~-gi~~~~A----------------HdAlaDv~AT~~l~~~l~~~ 502 (1428)
|++|++.+ |...... +-|..||.++..|+..|.++
T Consensus 135 L~~L~~~~lg~~~~K~~~~sdw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~ 186 (440)
T 3cym_A 135 LAAVTEHFLGLTLAKEHSAADWSYRPLPRDWRNYAALDVELLIELETKMRAE 186 (440)
T ss_dssp HHHHHHHHHCEECCCCCTTCCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccccccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987 6432211 12778999998888877654
No 133
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=22.43 E-value=97 Score=33.91 Aligned_cols=74 Identities=18% Similarity=0.179 Sum_probs=42.3
Q ss_pred CccchhhHHHHHHHhCCHHHHHHHhhhcchhhhhhHHHhhhhchhhhhhhhccccCCCCCCcCCCccccccCCCCHHHHH
Q psy2882 960 KKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLM 1039 (1428)
Q Consensus 960 pGIG~KtA~kLL~~~gsle~i~~~~~~i~~k~~~~l~~~~~~~~~~~~L~~i~~d~~l~~~~~~~~~~~~~~~~d~~~l~ 1039 (1428)
.|+|.|||..||..||+.+.+-+-..+..- +||..-...- -+-|..+ +|-- ..-+.....|.+...
T Consensus 417 egvgrktaerllrafgnpervkqlarefei---eklasvegvg--ervlrsl---vpgy------aslisirgidrerae 482 (519)
T 2csb_A 417 EGVGRKTAERLLRAFGNPERVKQLAREFEI---EKLASVEGVG--ERVLRSL---VPGY------ASLISIRGIDRERAE 482 (519)
T ss_dssp TTCCHHHHHHHHHHHSSHHHHHHHHHTTCH---HHHHTSTTCS--HHHHHHH---STTH------HHHHTSTTCCHHHHH
T ss_pred cccchhHHHHHHHHhCCHHHHHHHHHHHhH---HHHhhccchH--HHHHHHh---ccch------hhheeeccccHHHHH
Confidence 689999999999999999887654433221 1111000000 0011111 1110 123456778988888
Q ss_pred HHHHHccC
Q psy2882 1040 QLFNKYNI 1047 (1428)
Q Consensus 1040 ~l~~~~~f 1047 (1428)
.++++||=
T Consensus 483 rllkkygg 490 (519)
T 2csb_A 483 RLLKKYGG 490 (519)
T ss_dssp HHHHHHTS
T ss_pred HHHHHhCC
Confidence 99999973
No 134
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=21.96 E-value=32 Score=25.85 Aligned_cols=25 Identities=32% Similarity=0.659 Sum_probs=19.0
Q ss_pred cCCcccccccCCCCccccCCHHHHHhcccc
Q psy2882 118 KRKKFCRFTVMNIKQIDYKDIETLKDFIQE 147 (1428)
Q Consensus 118 ~~~k~c~~~~~~~~~~dyk~~~~l~~fi~~ 147 (1428)
+-+.-|+||..+ |.|+..|-+-|.|
T Consensus 7 kikqhcrfckkk-----ysdvknlikhire 31 (37)
T 2elu_A 7 GIKQHCRFCKKK-----YSDVKNLIKHIRD 31 (37)
T ss_dssp CCCCEETTTTEE-----CSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 346789999987 7788877776654
No 135
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=21.62 E-value=91 Score=31.91 Aligned_cols=52 Identities=21% Similarity=0.310 Sum_probs=33.0
Q ss_pred HHHHHHHcCCcEEEecc---------hhhHHHHHHHHHHHhhhCCCEEEEEeCCCCcccccc
Q psy2882 862 IHQMVKAIGWPILIIKG---------VEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVS 914 (1428)
Q Consensus 862 i~~~l~~~gi~~i~~~g---------~EADD~iatla~~~~~~~~~~v~IvS~DkDl~QLv~ 914 (1428)
.++.|...|+.++..|- =.+|=-|++=+-... ..-..++|+|+|.||..++.
T Consensus 66 ~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a-~~~d~~vLvSgD~DF~plv~ 126 (165)
T 2qip_A 66 FHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIA-PDVDRVILVSGDGDFSLLVE 126 (165)
T ss_dssp HHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHG-GGCSEEEEECCCGGGHHHHH
T ss_pred HHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhh-ccCCEEEEEECChhHHHHHH
Confidence 44677778997664431 145644544333322 23568999999999998863
No 136
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=20.46 E-value=21 Score=31.31 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=18.3
Q ss_pred ccCCCCCCCccchhhHHHHHHHh
Q psy2882 952 MSDNLPGVKKIGPKTAVKLLNQY 974 (1428)
Q Consensus 952 ~sDnipGvpGIG~KtA~kLL~~~ 974 (1428)
+.+.+-.|||||+++|..+...+
T Consensus 44 ~~~~L~~i~Gig~~~a~~i~~~~ 66 (75)
T 1x2i_A 44 SVAELMKVEGIGEKIAKEIRRVI 66 (75)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHHH
T ss_pred CHHHHhcCCCCCHHHHHHHHHHH
Confidence 34556789999999999987665
No 137
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=20.38 E-value=1.9e+02 Score=27.86 Aligned_cols=54 Identities=11% Similarity=0.262 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHHHHHHHHcccCCCccccHHHHHHHHHHHHhhcCcc-hHHHHHHHHh
Q psy2882 719 IETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEH-DTKILNALLM 775 (1428)
Q Consensus 719 p~~L~~~e~~~w~~~~~~rl~~~~~~~~~~~~~~~~i~~L~~~~~~~-~~~lL~~L~~ 775 (1428)
|..++...+.+|..|.. +.+ -...--...|.+.+++|...+... -..+|++|+.
T Consensus 51 Pg~~d~~~raKw~AW~~--l~g-mS~eeA~~~YI~~v~~l~~~~~~~~~~~~~~~le~ 105 (106)
T 3fp5_A 51 PGLMDFTGKAKWDAWKS--VEG-TSKEVAYQKYVEKLLEILKKADTEESKKYIAEIEA 105 (106)
T ss_dssp CCTTCHHHHHHHHHHHT--TTT-CCHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHH--ccC-CCHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhc
Confidence 77788899999999955 322 000112688999999999885555 6678888863
Done!