Your job contains 1 sequence.
>psy2882
MIERYKKIIISGKGKIHRLEDWGRRSLAYQIKKVIKAHYICFNIEINKKTLLEIETSFRF
NDAILRYLTIKTKKVETEESSFLRFIQKKEKVLKMIFGKKNNKNRFKQKRQQQNPLFKRK
KFCRFTVMNIKQIDYKDIETLKDFIQENGKIMAARLTGTCSHYQRQITFIRKNMQVILLK
DIPNLGKLGEIIKVKNGYARNFLIPKNKARHATKFVIKEFEEKRIKLEKTAFTIFLNAKK
IGEEIKKLNINIIKKSGVDGKLFGSVTNSDIVKELEKKGLKIEKNKIKLPNNSIKKIGNY
YIDILLHNGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFL
PDPRACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWR
NLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHK
KAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSS
KHSYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDIPISM
IHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS
DLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIE
TLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGKID
GSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRNIL
YPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKV
IISTNDKDMAQLVSNKIALINNNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNLPGVK
KIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCDLTKN
IVSIPESLILQPKDEKLLMQLFNKYNIPLKNHDDNISDENYDIDCSDAKSLFNLTNHFLI
AMPGFSTPFFDGAVVYLCEHNSNGAFGIIINKPTDMTINILLDNDSNLKLKLVPNTKEFI
LEKTTKTIMFGGPIQIDRGFVLHNITNEKSPIFNSTLNIASDISLTTSRDILESFSRGDG
PSQLLISLGCSGWGAGQLEEEIMNNHWLIVDANSEVIFNVPCEQRFFAAVKLLGVNPLII
GIAFGNTLIKHAKPLKIIHSITNKAKFNEISKLVEKWKPNTVKKMELKKIINTKHQTIVA
YTNYGVKFRNGIFYTKSFLVSPEIDPIFWSINKYNFLTKKDFIHISKFNPSVVILGTGNI
QHFIHPKLTYILTQKNIGIECMNNQAACRTYNILVSDDIKAMLALILD
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy2882
(1428 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q483M2 - symbol:sbcB "Exodeoxyribonuclease I" s... 833 2.3e-82 1
TIGR_CMR|CPS_2014 - symbol:CPS_2014 "exodeoxyribonuclease... 833 2.3e-82 1
TIGR_CMR|SO_2790 - symbol:SO_2790 "exodeoxyribonuclease I... 833 2.3e-82 1
UNIPROTKB|P04995 - symbol:sbcB "exonuclease I, 3' --> 5' ... 805 2.5e-79 1
UNIPROTKB|Q9KSM2 - symbol:VC_1234 "Exodeoxyribonuclease I... 749 2.9e-73 1
TIGR_CMR|VC_1234 - symbol:VC_1234 "exodeoxyribonuclease I... 749 2.9e-73 1
TIGR_CMR|CBU_1795 - symbol:CBU_1795 "DNA polymerase I" sp... 568 1.0e-51 1
UNIPROTKB|Q9KVN3 - symbol:VC_0108 "DNA polymerase I" spec... 506 8.4e-45 1
TIGR_CMR|VC_0108 - symbol:VC_0108 "DNA polymerase I" spec... 506 8.4e-45 1
UNIPROTKB|P00582 - symbol:polA species:83333 "Escherichia... 494 1.7e-43 1
TIGR_CMR|CPS_4978 - symbol:CPS_4978 "DNA polymerase I" sp... 501 1.0e-42 2
TIGR_CMR|SO_4669 - symbol:SO_4669 "DNA polymerase I" spec... 486 2.1e-41 2
UNIPROTKB|Q48PV5 - symbol:polA "DNA polymerase I" species... 474 2.5e-41 1
TIGR_CMR|GSU_0541 - symbol:GSU_0541 "DNA polymerase I" sp... 443 1.4e-35 3
TIGR_CMR|ECH_0080 - symbol:ECH_0080 "DNA polymerase I" sp... 410 2.4e-34 1
UNIPROTKB|Q9KUP8 - symbol:VC_0467 "UPF0301 protein VC_046... 373 5.4e-33 1
TIGR_CMR|VC_0467 - symbol:VC_0467 "conserved hypothetical... 373 5.4e-33 1
UNIPROTKB|Q0C2B4 - symbol:polA "DNA polymerase I" species... 396 7.4e-33 1
UNIPROTKB|Q605E8 - symbol:MCA2336 "UPF0301 protein MCA233... 368 1.8e-32 1
TIGR_CMR|CBU_1363 - symbol:CBU_1363 "exodeoxyribonuclease... 361 1.0e-31 1
UNIPROTKB|Q3ABL3 - symbol:polA "DNA polymerase" species:2... 371 2.9e-30 1
TIGR_CMR|CHY_1650 - symbol:CHY_1650 "DNA polymerase I" sp... 371 2.9e-30 1
TIGR_CMR|SPO_3844 - symbol:SPO_3844 "DNA polymerase I" sp... 370 4.9e-30 1
TIGR_CMR|NSE_0675 - symbol:NSE_0675 "DNA polymerase I" sp... 361 4.8e-29 2
TIGR_CMR|APH_0001 - symbol:APH_0001 "DNA polymerase I" sp... 368 1.7e-28 2
UNIPROTKB|Q5LX84 - symbol:SPO0296 "UPF0301 protein SPO029... 326 5.6e-28 1
TIGR_CMR|SPO_0296 - symbol:SPO_0296 "conserved hypothetic... 326 5.6e-28 1
TIGR_CMR|DET_1391 - symbol:DET_1391 "DNA-directed DNA pol... 357 1.7e-27 2
TIGR_CMR|BA_4831 - symbol:BA_4831 "DNA polymerase I" spec... 352 2.0e-27 2
UNIPROTKB|Q486M0 - symbol:CPS_1252 "UPF0301 protein CPS_1... 318 4.0e-27 1
TIGR_CMR|CPS_1252 - symbol:CPS_1252 "conserved hypothetic... 318 4.0e-27 1
UNIPROTKB|Q87VA2 - symbol:PSPTO_5037 "UPF0301 protein PSP... 312 1.7e-26 1
UNIPROTKB|Q8EBZ9 - symbol:SO_3346 "UPF0301 protein SO_334... 312 1.7e-26 1
TIGR_CMR|SO_3346 - symbol:SO_3346 "conserved hypothetical... 312 1.7e-26 1
UNIPROTKB|P0A550 - symbol:polA "DNA polymerase I" species... 351 1.4e-25 3
TIGR_CMR|BA_1606 - symbol:BA_1606 "5'-3' exonuclease fami... 296 8.8e-25 1
TIGR_CMR|CJE_0383 - symbol:CJE_0383 "DNA polymerase type ... 314 1.5e-22 2
UNIPROTKB|Q0C3C2 - symbol:HNE_1049 "UPF0301 protein HNE_1... 270 5.2e-22 1
UNIPROTKB|Q9KTK4 - symbol:xni "Protein Xni" species:24327... 256 1.6e-20 1
TIGR_CMR|VC_0898 - symbol:VC_0898 "exodeoxyribonuclease I... 256 1.6e-20 1
TAIR|locus:2083775 - symbol:AT3G52050 species:3702 "Arabi... 248 1.4e-18 2
UNIPROTKB|Q47YA8 - symbol:xni "Protein Xni" species:16787... 227 2.0e-17 1
TIGR_CMR|CPS_3538 - symbol:CPS_3538 "exodeoxyribonuclease... 227 2.0e-17 1
UNIPROTKB|Q9KUZ2 - symbol:rpsF "30S ribosomal protein S6"... 225 3.2e-17 1
TIGR_CMR|VC_0366 - symbol:VC_0366 "ribosomal protein S6" ... 225 3.2e-17 1
GENEDB_PFALCIPARUM|PFB0180w - symbol:PFB0180w "5'-3' exon... 194 3.3e-17 2
UNIPROTKB|O96139 - symbol:PFB0180w "5'-3' exonuclease, N-... 194 3.3e-17 2
TIGR_CMR|SO_1549 - symbol:SO_1549 "exodeoxyribonuclease I... 222 6.8e-17 1
UNIPROTKB|P02358 - symbol:rpsF species:83333 "Escherichia... 219 1.4e-16 1
UNIPROTKB|Q60BQ2 - symbol:MCA0413 "UPF0301 protein MCA041... 216 2.9e-16 1
TIGR_CMR|SO_3930 - symbol:SO_3930 "ribosomal protein S6" ... 215 3.8e-16 1
UNIPROTKB|P38506 - symbol:ygdG "YgdG" species:83333 "Esch... 209 1.6e-15 1
UNIPROTKB|Q9KUY9 - symbol:rplI "50S ribosomal protein L9"... 209 1.6e-15 1
TIGR_CMR|VC_0369 - symbol:VC_0369 "ribosomal protein L9" ... 209 1.6e-15 1
TIGR_CMR|CBU_0864 - symbol:CBU_0864 "ribosomal protein S6... 203 7.1e-15 1
TIGR_CMR|CPS_0415 - symbol:CPS_0415 "ribosomal protein S6... 202 9.1e-15 1
UNIPROTKB|Q83A18 - symbol:CBU_2093 "UPF0301 protein CBU_2... 199 1.9e-14 1
TIGR_CMR|CBU_2093 - symbol:CBU_2093 "conserved hypothetic... 199 1.9e-14 1
UNIPROTKB|P0A7R1 - symbol:rplI "50S ribosomal subunit pro... 192 1.1e-13 1
TIGR_CMR|SO_3927 - symbol:SO_3927 "ribosomal protein L9" ... 187 3.6e-13 1
TIGR_CMR|CBU_0865 - symbol:CBU_0865 "ribosomal protein S1... 182 1.2e-12 1
TIGR_CMR|CPS_0418 - symbol:CPS_0418 "ribosomal protein L9... 182 1.2e-12 1
TIGR_CMR|CBU_0867 - symbol:CBU_0867 "ribosomal protein L9... 177 4.2e-12 1
TIGR_CMR|CPS_0417 - symbol:CPS_0417 "ribosomal protein S1... 177 4.2e-12 1
UNIPROTKB|P0A7T7 - symbol:rpsR "30S ribosomal subunit pro... 174 8.8e-12 1
UNIPROTKB|Q9KUZ0 - symbol:rpsR "30S ribosomal protein S18... 173 1.1e-11 1
TIGR_CMR|SO_3928 - symbol:SO_3928 "ribosomal protein S18"... 173 1.1e-11 1
TIGR_CMR|VC_0368 - symbol:VC_0368 "ribosomal protein S18"... 173 1.1e-11 1
TIGR_CMR|GSU_0668 - symbol:GSU_0668 "ribosomal protein L9... 167 4.9e-11 1
TAIR|locus:2036293 - symbol:AT1G34380 species:3702 "Arabi... 182 1.2e-10 1
TIGR_CMR|CHY_0039 - symbol:CHY_0039 "ribosomal protein L9... 158 4.4e-10 1
TIGR_CMR|BA_5721 - symbol:BA_5721 "ribosomal protein S18"... 155 9.3e-10 1
TIGR_CMR|CJE_0766 - symbol:CJE_0766 "ribosomal protein L9... 155 9.3e-10 1
UNIPROTKB|P66315 - symbol:rplI "50S ribosomal protein L9"... 152 1.9e-09 1
UNIPROTKB|Q83D81 - symbol:CBU_0859 "Hypothetical membrane... 152 1.9e-09 1
TIGR_CMR|CBU_0859 - symbol:CBU_0859 "conserved hypothetic... 152 1.9e-09 1
TIGR_CMR|SPO_2283 - symbol:SPO_2283 "ribosomal protein L9... 152 1.9e-09 1
TIGR_CMR|BA_5718 - symbol:BA_5718 "ribosomal protein L9" ... 151 2.5e-09 1
TIGR_CMR|CHY_0037 - symbol:CHY_0037 "ribosomal protein S1... 139 4.7e-08 1
TIGR_CMR|GSU_0666 - symbol:GSU_0666 "ribosomal protein S1... 138 6.0e-08 1
TAIR|locus:2082127 - symbol:RPL9 "ribosomal protein L9" s... 142 9.0e-08 1
TIGR_CMR|ECH_0310 - symbol:ECH_0310 "ribosomal protein L9... 144 1.6e-07 1
UNIPROTKB|Q10699 - symbol:MT2151 "5'-3' exonuclease" spec... 153 1.7e-07 1
TIGR_CMR|GSU_0665 - symbol:GSU_0665 "ribosomal protein S6... 129 5.4e-07 1
TIGR_CMR|DET_0541 - symbol:DET_0541 "ribosomal protein L9... 128 6.9e-07 1
TIGR_CMR|SPO_2282 - symbol:SPO_2282 "ribosomal protein S1... 122 3.0e-06 1
TIGR_CMR|APH_0153 - symbol:APH_0153 "ribosomal protein L9... 133 4.9e-06 1
TIGR_CMR|NSE_0060 - symbol:NSE_0060 "ribosomal protein L9... 119 6.3e-06 1
TIGR_CMR|CJE_1215 - symbol:CJE_1215 "ribosomal protein S1... 118 8.1e-06 1
TIGR_CMR|CHY_0035 - symbol:CHY_0035 "ribosomal protein S6... 115 1.7e-05 1
TIGR_CMR|DET_1044 - symbol:DET_1044 "ribosomal protein S1... 115 1.7e-05 1
GENEDB_PFALCIPARUM|PFB0750w - symbol:PFB0750w "vacuolar p... 103 2.1e-05 4
UNIPROTKB|O96243 - symbol:PFB0750w "Vacuolar protein-sort... 103 2.1e-05 4
DICTYBASE|DDB_G0267464 - symbol:polA "mitochondrial DNA p... 171 2.5e-05 4
TIGR_CMR|NSE_0062 - symbol:NSE_0062 "ribosomal protein S6... 112 3.5e-05 1
UNIPROTKB|Q2GGV2 - symbol:ECH_0516 "Putative uncharacteri... 111 4.5e-05 1
TIGR_CMR|ECH_0516 - symbol:ECH_0516 "conserved hypothetic... 111 4.5e-05 1
UNIPROTKB|P67757 - symbol:MT0043 "UPF0301 protein Rv0038/... 124 6.1e-05 1
TIGR_CMR|BA_5723 - symbol:BA_5723 "ribosomal protein S6" ... 106 0.00015 1
UNIPROTKB|Q5LR14 - symbol:SPO2318 "Uncharacterized protei... 104 0.00025 1
WARNING: Descriptions of 4 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|Q483M2 [details] [associations]
symbol:sbcB "Exodeoxyribonuclease I" species:167879
"Colwellia psychrerythraea 34H" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0006308 "DNA catabolic process" evidence=ISS]
[GO:0008852 "exodeoxyribonuclease I activity" evidence=ISS]
InterPro:IPR012337 InterPro:IPR013620 InterPro:IPR023607
Pfam:PF08411 PIRSF:PIRSF000977 Pfam:PF00929 GO:GO:0006281
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0006308 eggNOG:COG2925
HOGENOM:HOG000276591 KO:K01141 OMA:PYAREWQ ProtClustDB:PRK11779
GO:GO:0008852 RefSeq:YP_268744.1 ProteinModelPortal:Q483M2
SMR:Q483M2 STRING:Q483M2 GeneID:3520948 KEGG:cps:CPS_2014
PATRIC:21467155 BioCyc:CPSY167879:GI48-2084-MONOMER Uniprot:Q483M2
Length = 487
Score = 833 (298.3 bits), Expect = 2.3e-82, P = 2.3e-82
Identities = 173/463 (37%), Positives = 270/463 (58%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+ LW+DYET+G+N + D+P QFA IRTD+ LN I P M YC P D+LP P ACL+T I
Sbjct: 14 SILWHDYETWGINPKFDKPSQFAGIRTDLDLNIIGEPEMFYCTPPVDYLPHPEACLVTGI 73
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+ E +FA+ I +F +P T GYN+I FDDE+TR++ +RN +PY REW+
Sbjct: 74 TPQKAQREGLSEAEFAARIHTLFTQPNTCVAGYNSIRFDDEVTRYLLYRNFYDPYAREWQ 133
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWP-YKNNGKP--SFKLEHLSFVNNLSHKKAHDALSD 488
N SRWD+I++++A Y L P GI WP K +G+ SF+LE L+ N++SH+ AHDA+SD
Sbjct: 134 NGNSRWDIIDMVRACYALRPEGINWPTVKRDGEEVISFRLELLTAANDISHEAAHDAMSD 193
Query: 489 VRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLM 548
V AT+ +A+LI+ P+L++FI +L+ K V I P + + SS H S
Sbjct: 194 VYATIAMAKLIKEKQPKLYDFIFNLKNKNQVKDLINTAEMTPIVHTSSKVSSAHGCTSWF 253
Query: 549 WPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNR 605
P+ HP+NKN +I +L D L +I+ L + + D IP+ +IH+N+
Sbjct: 254 APVSYHPVNKNAVICVDLARDISPLLTLSSEEIKARLYTRYDDLAPDELPIPVKLIHVNK 313
Query: 606 SPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELN 665
P++ +L N R + N+ +F +N D++
Sbjct: 314 CPVIAPAKTLLPENAE-RLAIPRDVCLDNLALLRKHAELRDKLSDVFATSDFDNDDVDA- 371
Query: 666 IDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
++ LY +F S D ++ ILR +SP++L+N F F++++L L+F YRARN+ TLS
Sbjct: 372 -EQALYGGSFFSHSDKAQMDILRGLSPEQLANHPFQFQDERLSVLLFRYRARNYPYTLST 430
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDT 767
+E ++W++Y ++ + +++ F ++IE+L A+EH+T
Sbjct: 431 EEQQKWQQYCQNKLQYGGKGILSLDEFMMKIENL---AHEHET 470
>TIGR_CMR|CPS_2014 [details] [associations]
symbol:CPS_2014 "exodeoxyribonuclease I" species:167879
"Colwellia psychrerythraea 34H" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0006308 "DNA catabolic process" evidence=ISS]
[GO:0008852 "exodeoxyribonuclease I activity" evidence=ISS]
InterPro:IPR012337 InterPro:IPR013620 InterPro:IPR023607
Pfam:PF08411 PIRSF:PIRSF000977 Pfam:PF00929 GO:GO:0006281
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0006308 eggNOG:COG2925
HOGENOM:HOG000276591 KO:K01141 OMA:PYAREWQ ProtClustDB:PRK11779
GO:GO:0008852 RefSeq:YP_268744.1 ProteinModelPortal:Q483M2
SMR:Q483M2 STRING:Q483M2 GeneID:3520948 KEGG:cps:CPS_2014
PATRIC:21467155 BioCyc:CPSY167879:GI48-2084-MONOMER Uniprot:Q483M2
Length = 487
Score = 833 (298.3 bits), Expect = 2.3e-82, P = 2.3e-82
Identities = 173/463 (37%), Positives = 270/463 (58%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+ LW+DYET+G+N + D+P QFA IRTD+ LN I P M YC P D+LP P ACL+T I
Sbjct: 14 SILWHDYETWGINPKFDKPSQFAGIRTDLDLNIIGEPEMFYCTPPVDYLPHPEACLVTGI 73
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+ E +FA+ I +F +P T GYN+I FDDE+TR++ +RN +PY REW+
Sbjct: 74 TPQKAQREGLSEAEFAARIHTLFTQPNTCVAGYNSIRFDDEVTRYLLYRNFYDPYAREWQ 133
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWP-YKNNGKP--SFKLEHLSFVNNLSHKKAHDALSD 488
N SRWD+I++++A Y L P GI WP K +G+ SF+LE L+ N++SH+ AHDA+SD
Sbjct: 134 NGNSRWDIIDMVRACYALRPEGINWPTVKRDGEEVISFRLELLTAANDISHEAAHDAMSD 193
Query: 489 VRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLM 548
V AT+ +A+LI+ P+L++FI +L+ K V I P + + SS H S
Sbjct: 194 VYATIAMAKLIKEKQPKLYDFIFNLKNKNQVKDLINTAEMTPIVHTSSKVSSAHGCTSWF 253
Query: 549 WPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNR 605
P+ HP+NKN +I +L D L +I+ L + + D IP+ +IH+N+
Sbjct: 254 APVSYHPVNKNAVICVDLARDISPLLTLSSEEIKARLYTRYDDLAPDELPIPVKLIHVNK 313
Query: 606 SPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELN 665
P++ +L N R + N+ +F +N D++
Sbjct: 314 CPVIAPAKTLLPENAE-RLAIPRDVCLDNLALLRKHAELRDKLSDVFATSDFDNDDVDA- 371
Query: 666 IDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
++ LY +F S D ++ ILR +SP++L+N F F++++L L+F YRARN+ TLS
Sbjct: 372 -EQALYGGSFFSHSDKAQMDILRGLSPEQLANHPFQFQDERLSVLLFRYRARNYPYTLST 430
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDT 767
+E ++W++Y ++ + +++ F ++IE+L A+EH+T
Sbjct: 431 EEQQKWQQYCQNKLQYGGKGILSLDEFMMKIENL---AHEHET 470
>TIGR_CMR|SO_2790 [details] [associations]
symbol:SO_2790 "exodeoxyribonuclease I" species:211586
"Shewanella oneidensis MR-1" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0006308 "DNA catabolic process" evidence=ISS] [GO:0008852
"exodeoxyribonuclease I activity" evidence=ISS] InterPro:IPR012337
InterPro:IPR013620 InterPro:IPR023607 Pfam:PF08411
PIRSF:PIRSF000977 Pfam:PF00929 GO:GO:0006281 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR013520
SUPFAM:SSF53098 HOGENOM:HOG000276591 KO:K01141 OMA:PYAREWQ
ProtClustDB:PRK11779 GO:GO:0008852 HSSP:P04995 RefSeq:NP_718368.1
ProteinModelPortal:Q8EDG2 SMR:Q8EDG2 GeneID:1170490
KEGG:son:SO_2790 PATRIC:23525215 Uniprot:Q8EDG2
Length = 470
Score = 833 (298.3 bits), Expect = 2.3e-82, P = 2.3e-82
Identities = 179/475 (37%), Positives = 271/475 (57%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+ W+DYETFG N +DRP QFA IRTD+ LN I P YCK + D+LP P A LIT I
Sbjct: 8 SIFWHDYETFGANPAKDRPAQFAGIRTDLDLNIISEPETFYCKQSTDYLPSPEAILITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+PE +F I +F + T GYN++ FDDE+TR+ F+RN I+PY REW+
Sbjct: 68 TPQLANLKGLPETEFMGRIHTLFSQANTCVAGYNSLRFDDEVTRYGFYRNFIDPYAREWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N +RWD+I++++A Y P GI WP K +G PSFKLEHL+ N LSH+KAHDA+SDV A
Sbjct: 128 NGNTRWDIIDLVRACYAFRPDGIHWPLKEDGSPSFKLEHLTQANGLSHEKAHDAMSDVYA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ +A+LI+ P+L+ + LR+K+ V A+I +P +++ S+ H +L+ P+
Sbjct: 188 TIAMAKLIKEKQPKLYQYYFELRRKQAVSAQIDVLNMQPLAHVSSKISAMHGCTTLIAPV 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP NKN +I NL D D+ +I+ + + +D IP+ +HLN+ P
Sbjct: 248 AHHPSNKNAIICVNLAMDLSPLFELDVEQIKTRMYTPRAELADDELPIPVKQVHLNKCPF 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCA---FKNIKCASSILNNTYIWKKIFL-DYKINNSDLEL 664
+ S K+L R D A +K +K + ++F D + +D +L
Sbjct: 308 ITS-AKILDDAQAERLSIDKAFARGQYKRLKAHPELREKL---AQLFEHDGEATTTDPDL 363
Query: 665 NIDEELYNN-FISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLS 723
LY+ F S D K+ I+R P+ L+ ++ F++ ++ E++F YRARN+ E L
Sbjct: 364 M----LYSGGFFSPADKAKMEIIRHTLPQNLAALDLQFDDGRIPEMLFRYRARNYPELLD 419
Query: 724 YKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLK--KANEHDTKILNALLMY 776
+E RW+ + R ++ + L++E+LL+ + +EH K+L AL Y
Sbjct: 420 DQESHRWRTFCQQRLADQD--------YLLKLENLLQDTEGDEHKQKLLAALCHY 466
>UNIPROTKB|P04995 [details] [associations]
symbol:sbcB "exonuclease I, 3' --> 5' specific;
deoxyribophosphodiesterase" species:83333 "Escherichia coli K-12"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0008852
"exodeoxyribonuclease I activity" evidence=IEA;IDA] [GO:0006308
"DNA catabolic process" evidence=IDA] InterPro:IPR012337
InterPro:IPR013620 InterPro:IPR023607 Pfam:PF08411
PIRSF:PIRSF000977 Pfam:PF00929 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0006281
GO:GO:0003676 InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0006308
EMBL:U00009 EMBL:J02641 PIR:B64966 RefSeq:NP_416515.1
RefSeq:YP_490253.1 PDB:1FXX PDB:2QXF PDB:3C94 PDB:3C95 PDB:3HL8
PDB:3HP9 PDBsum:1FXX PDBsum:2QXF PDBsum:3C94 PDBsum:3C95
PDBsum:3HL8 PDBsum:3HP9 ProteinModelPortal:P04995 SMR:P04995
DIP:DIP-10827N IntAct:P04995 MINT:MINT-1241098 PRIDE:P04995
EnsemblBacteria:EBESCT00000000980 EnsemblBacteria:EBESCT00000015407
GeneID:12931420 GeneID:946529 KEGG:ecj:Y75_p1973 KEGG:eco:b2011
PATRIC:32119357 EchoBASE:EB0919 EcoGene:EG10926 eggNOG:COG2925
HOGENOM:HOG000276591 KO:K01141 OMA:PYAREWQ ProtClustDB:PRK11779
BioCyc:EcoCyc:EG10926-MONOMER BioCyc:ECOL316407:JW1993-MONOMER
BioCyc:MetaCyc:EG10926-MONOMER BRENDA:3.1.11.1
EvolutionaryTrace:P04995 Genevestigator:P04995 GO:GO:0008852
Uniprot:P04995
Length = 475
Score = 805 (288.4 bits), Expect = 2.5e-79, P = 2.5e-79
Identities = 169/438 (38%), Positives = 256/438 (58%)
Query: 305 LLHNGN--STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPD 362
++++G STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP
Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60
Query: 363 PRACLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNL 422
P A LIT ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN
Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120
Query: 423 INPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKA 482
+PY W+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H A
Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180
Query: 483 HDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKH 542
HDA++DV AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF +
Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240
Query: 543 SYISLMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISM 600
S + P+ HP N+N +I +L D L D + +R+ L K ++ +P+ +
Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300
Query: 601 IHLNRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKK---IFLDYK- 656
+H+N+ P V++ L R + N+K + N + +K IF + +
Sbjct: 301 VHINKCP-VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEP 356
Query: 657 INNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRAR 716
SD N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRAR
Sbjct: 357 FTPSD---NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRAR 413
Query: 717 NFIETLSYKELKRWKKYR 734
NF TL Y E +RW ++R
Sbjct: 414 NFPGTLDYAEQQRWLEHR 431
>UNIPROTKB|Q9KSM2 [details] [associations]
symbol:VC_1234 "Exodeoxyribonuclease I" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006281 "DNA
repair" evidence=ISS] [GO:0006308 "DNA catabolic process"
evidence=ISS] [GO:0008852 "exodeoxyribonuclease I activity"
evidence=ISS] InterPro:IPR012337 InterPro:IPR013620
InterPro:IPR023607 Pfam:PF08411 PIRSF:PIRSF000977 Pfam:PF00929
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0003676
InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0006308 KO:K01141
OMA:PYAREWQ ProtClustDB:PRK11779 GO:GO:0008852 HSSP:P04995
PIR:B82227 RefSeq:NP_230879.1 ProteinModelPortal:Q9KSM2 SMR:Q9KSM2
DNASU:2614671 GeneID:2614671 KEGG:vch:VC1234 PATRIC:20081554
Uniprot:Q9KSM2
Length = 474
Score = 749 (268.7 bits), Expect = 2.9e-73, P = 2.9e-73
Identities = 160/477 (33%), Positives = 267/477 (55%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYET+G+N +DRP QFA +RTD+ N I P+++YC+ D+LP P A LIT I
Sbjct: 8 TFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G+ E +F + I P TI++GYN+I FDDE+TR+ +RN I+PY W+
Sbjct: 68 TPQKANSQGLAEPEFIARIHAELSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
+ SRWDL++V++A + L P GI WP ++G SFKLEHLS N + H AHDA++DV A
Sbjct: 128 HGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+ ++ P+LF++ ++R K+ + I P +++ M + Y S + PI
Sbjct: 188 TIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVPI 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L DP+ L D ++ L + D +P+ ++HLN+ PI
Sbjct: 248 AWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++ + D ++ I + I +K+ + + E ++D
Sbjct: 308 -LAPAKTLTAENAQKIGIDREQCLAHLNV---IRQHPEIREKLVTVFSQEREFNQESDVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LY F S D + I+R+ +P+ L ++ +K++E L+F YRAR++ TL+ E
Sbjct: 364 SQLYAGFFSPADRAAMEIIRTTAPENLGSLAIRVADKRIEPLLFRYRARHYPHTLTDTEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGKIDGSSC 784
+RW + R Y ++N + + L +E+L+ + K+ +Y ++ +C
Sbjct: 424 RRWAAH--CRDYFERN----LEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC 474
>TIGR_CMR|VC_1234 [details] [associations]
symbol:VC_1234 "exodeoxyribonuclease I" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0006308 "DNA catabolic process" evidence=ISS] [GO:0008852
"exodeoxyribonuclease I activity" evidence=ISS] InterPro:IPR012337
InterPro:IPR013620 InterPro:IPR023607 Pfam:PF08411
PIRSF:PIRSF000977 Pfam:PF00929 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0003676
InterPro:IPR013520 SUPFAM:SSF53098 GO:GO:0006308 KO:K01141
OMA:PYAREWQ ProtClustDB:PRK11779 GO:GO:0008852 HSSP:P04995
PIR:B82227 RefSeq:NP_230879.1 ProteinModelPortal:Q9KSM2 SMR:Q9KSM2
DNASU:2614671 GeneID:2614671 KEGG:vch:VC1234 PATRIC:20081554
Uniprot:Q9KSM2
Length = 474
Score = 749 (268.7 bits), Expect = 2.9e-73, P = 2.9e-73
Identities = 160/477 (33%), Positives = 267/477 (55%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TF ++DYET+G+N +DRP QFA +RTD+ N I P+++YC+ D+LP P A LIT I
Sbjct: 8 TFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGI 67
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ + G+ E +F + I P TI++GYN+I FDDE+TR+ +RN I+PY W+
Sbjct: 68 TPQKANSQGLAEPEFIARIHAELSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQ 127
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
+ SRWDL++V++A + L P GI WP ++G SFKLEHLS N + H AHDA++DV A
Sbjct: 128 HGNSRWDLLDVLRACHALRPEGIEWPENDDGFTSFKLEHLSVANGIEHSNAHDAMADVIA 187
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LA+ ++ P+LF++ ++R K+ + I P +++ M + Y S + PI
Sbjct: 188 TIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHYTSWIVPI 247
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPI 608
HP N+N +I +L DP+ L D ++ L + D +P+ ++HLN+ PI
Sbjct: 248 AWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPI 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNS-DLELNID 667
++ K L++ + D ++ I + I +K+ + + E ++D
Sbjct: 308 -LAPAKTLTAENAQKIGIDREQCLAHLNV---IRQHPEIREKLVTVFSQEREFNQESDVD 363
Query: 668 EELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKEL 727
+LY F S D + I+R+ +P+ L ++ +K++E L+F YRAR++ TL+ E
Sbjct: 364 SQLYAGFFSPADRAAMEIIRTTAPENLGSLAIRVADKRIEPLLFRYRARHYPHTLTDTEQ 423
Query: 728 KRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGKIDGSSC 784
+RW + R Y ++N + + L +E+L+ + K+ +Y ++ +C
Sbjct: 424 RRWAAH--CRDYFERN----LEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC 474
>TIGR_CMR|CBU_1795 [details] [associations]
symbol:CBU_1795 "DNA polymerase I" species:227377
"Coxiella burnetii RSA 493" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:AE016828
GenomeReviews:AE016828_GR SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 SUPFAM:SSF47807 HOGENOM:HOG000020998
KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755 TIGRFAMs:TIGR00593
RefSeq:NP_820774.2 ProteinModelPortal:Q83AT5 PRIDE:Q83AT5
GeneID:1209706 KEGG:cbu:CBU_1795 PATRIC:17932329
BioCyc:CBUR227377:GJ7S-1767-MONOMER Uniprot:Q83AT5
Length = 902
Score = 568 (205.0 bits), Expect = 1.0e-51, P = 1.0e-51
Identities = 117/269 (43%), Positives = 170/269 (63%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
IDGSS ++RA+YALP + N P GA+YG I MLRKL Y+ Y+A +FD KGK FR+
Sbjct: 19 IDGSSYLFRAYYALPPLTNRKGQPTGAMYGVINMLRKLMVEYQPDYVAVVFDPKGKTFRH 78
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY +YKA R +MP L QI + ++++A+G+P++I +G EADDVI TLAK+A K +
Sbjct: 79 DLYHTYKANRIEMPNELRSQIKPLFEIIRALGFPLIIKEGYEADDVIATLAKKAKEK-GM 137
Query: 899 KVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
V++ST DKD+AQ+V+ + L+N +++ + ++ +FGV PEKI+DY +L GD +DN+
Sbjct: 138 PVLVSTGDKDLAQIVNEHVTLVNTMTDRLLNSKGVLEKFGVPPEKIIDYLTLTGDTTDNI 197
Query: 957 PGVKKIGPKTAVKLLNQYNSLEXXXXXXXXXXXXXXXXLRFALNWLPXXXXXXXXXXDCD 1016
PGV K+GPKTAVK L+QY+S+E LR ++ LP D
Sbjct: 198 PGVPKVGPKTAVKWLSQYDSVENLIKHANEIKGKVGENLRACIDDLPLMRRLVTVISDLP 257
Query: 1017 LTKNIVSIPESLILQPKDEKLLMQLFNKY 1045
L +N P LI K+ + L++LF +Y
Sbjct: 258 LEEN----PTDLIQTEKNREKLIELFTEY 282
>UNIPROTKB|Q9KVN3 [details] [associations]
symbol:VC_0108 "DNA polymerase I" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR003583
InterPro:IPR008918 InterPro:IPR012337 InterPro:IPR018320
InterPro:IPR019760 InterPro:IPR020045 InterPro:IPR020046
Pfam:PF00476 Pfam:PF01367 Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868
PROSITE:PS00447 SMART:SM00278 SMART:SM00279 SMART:SM00474
SMART:SM00475 SMART:SM00482 GO:GO:0003677 GO:GO:0006260
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887 GO:GO:0008409
SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755
TIGRFAMs:TIGR00593 HSSP:P00582 PIR:B82364 RefSeq:NP_229767.1
ProteinModelPortal:Q9KVN3 SMR:Q9KVN3 DNASU:2614459 GeneID:2614459
KEGG:vch:VC0108 PATRIC:20079264 Uniprot:Q9KVN3
Length = 934
Score = 506 (183.2 bits), Expect = 8.4e-45, P = 8.4e-45
Identities = 111/271 (40%), Positives = 153/271 (56%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
IDGSS +YRAF+A P + P A+YG + M+R + + + + +A IFDAKGK FR+
Sbjct: 12 IDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMMRQFASDRMAVIFDAKGKTFRD 71
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
+Y YKA R MP L Q+ +HQ+++A+G P+L I+GVEADDVIGTLA+QA ++ +
Sbjct: 72 EMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQA-SQAGM 130
Query: 899 KVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
V+IST DKDMAQLV + I LIN N + DR +I +FG+ PE I+DY +L+GD DN+
Sbjct: 131 PVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGDKVDNI 190
Query: 957 PGVKKIGPKTAVKLLNQYNSLEXXXXXXXXXXXXXXXXLRFALNWLPXXXXXXXXXXDCD 1016
PGV +G KTA LL LE + L
Sbjct: 191 PGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENRGNAKLSYQLA 250
Query: 1017 LTKNIVSI---PESLILQPKDEKLLMQLFNK 1044
K V + P++L+ Q D LM L+ K
Sbjct: 251 TIKCDVELEESPQTLLKQTPDRDALMSLYGK 281
>TIGR_CMR|VC_0108 [details] [associations]
symbol:VC_0108 "DNA polymerase I" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00278 SMART:SM00279 SMART:SM00474 SMART:SM00475
SMART:SM00482 GO:GO:0003677 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887 GO:GO:0008409
SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755
TIGRFAMs:TIGR00593 HSSP:P00582 PIR:B82364 RefSeq:NP_229767.1
ProteinModelPortal:Q9KVN3 SMR:Q9KVN3 DNASU:2614459 GeneID:2614459
KEGG:vch:VC0108 PATRIC:20079264 Uniprot:Q9KVN3
Length = 934
Score = 506 (183.2 bits), Expect = 8.4e-45, P = 8.4e-45
Identities = 111/271 (40%), Positives = 153/271 (56%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
IDGSS +YRAF+A P + P A+YG + M+R + + + + +A IFDAKGK FR+
Sbjct: 12 IDGSSYLYRAFHAYPGTMSNGEIPTNAIYGVVNMIRSMMRQFASDRMAVIFDAKGKTFRD 71
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
+Y YKA R MP L Q+ +HQ+++A+G P+L I+GVEADDVIGTLA+QA ++ +
Sbjct: 72 EMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQA-SQAGM 130
Query: 899 KVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
V+IST DKDMAQLV + I LIN N + DR +I +FG+ PE I+DY +L+GD DN+
Sbjct: 131 PVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGDKVDNI 190
Query: 957 PGVKKIGPKTAVKLLNQYNSLEXXXXXXXXXXXXXXXXLRFALNWLPXXXXXXXXXXDCD 1016
PGV +G KTA LL LE + L
Sbjct: 191 PGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENRGNAKLSYQLA 250
Query: 1017 LTKNIVSI---PESLILQPKDEKLLMQLFNK 1044
K V + P++L+ Q D LM L+ K
Sbjct: 251 TIKCDVELEESPQTLLKQTPDRDALMSLYGK 281
>UNIPROTKB|P00582 [details] [associations]
symbol:polA species:83333 "Escherichia coli K-12"
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IDA] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IDA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA;IDA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA;IDA] [GO:0006281 "DNA repair" evidence=IEA;IMP]
[GO:0006260 "DNA replication" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00278 SMART:SM00279 SMART:SM00474 SMART:SM00475
SMART:SM00482 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0006281 GO:GO:0006261
GO:GO:0005622 SUPFAM:SSF53098 EMBL:L19201 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807
EMBL:V00317 EMBL:J01663 EMBL:J01664 PIR:A92360 RefSeq:NP_418300.1
RefSeq:YP_491586.1 PDB:1D8Y PDB:1D9D PDB:1D9F PDB:1DPI PDB:1KFD
PDB:1KFS PDB:1KLN PDB:1KRP PDB:1KSP PDB:1QSL PDB:2KFN PDB:2KFZ
PDB:2KZM PDB:2KZZ PDBsum:1D8Y PDBsum:1D9D PDBsum:1D9F PDBsum:1DPI
PDBsum:1KFD PDBsum:1KFS PDBsum:1KLN PDBsum:1KRP PDBsum:1KSP
PDBsum:1QSL PDBsum:2KFN PDBsum:2KFZ PDBsum:2KZM PDBsum:2KZZ
ProteinModelPortal:P00582 SMR:P00582 DIP:DIP-10524N IntAct:P00582
MINT:MINT-1225247 SWISS-2DPAGE:P00582 PaxDb:P00582 PRIDE:P00582
EnsemblBacteria:EBESCT00000001399 EnsemblBacteria:EBESCT00000014390
GeneID:12933188 GeneID:948356 KEGG:ecj:Y75_p3322 KEGG:eco:b3863
PATRIC:32123225 EchoBASE:EB0739 EcoGene:EG10746
HOGENOM:HOG000020998 KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755
BioCyc:EcoCyc:EG10746-MONOMER BioCyc:ECOL316407:JW3835-MONOMER
BioCyc:MetaCyc:EG10746-MONOMER SABIO-RK:P00582 BindingDB:P00582
ChEMBL:CHEMBL4298 DrugBank:DB00548 EvolutionaryTrace:P00582
Genevestigator:P00582 TIGRFAMs:TIGR00593 Uniprot:P00582
Length = 928
Score = 494 (179.0 bits), Expect = 1.7e-43, P = 1.7e-43
Identities = 101/202 (50%), Positives = 135/202 (66%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA++A P + N P GA+YG + MLR L Y+ T+ A +FDAKGK FR+
Sbjct: 12 VDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVVFDAKGKTFRD 71
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
L+ YK+ R MP +L QI +H MVKA+G P+L + GVEADDVIGTLA++A K
Sbjct: 72 ELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREA-EKAGR 130
Query: 899 KVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
V+IST DKDMAQLV+ I LIN N I +++++GV PE I+D+ +L+GD SDN+
Sbjct: 131 PVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMGDSSDNI 190
Query: 957 PGVKKIGPKTAVKLLNQYNSLE 978
PGV +G KTA LL L+
Sbjct: 191 PGVPGVGEKTAQALLQGLGGLD 212
>TIGR_CMR|CPS_4978 [details] [associations]
symbol:CPS_4978 "DNA polymerase I" species:167879
"Colwellia psychrerythraea 34H" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807
KO:K02335 OMA:EQRRYAK TIGRFAMs:TIGR00593 HOGENOM:HOG000020999
RefSeq:YP_271617.1 ProteinModelPortal:Q47UA6 SMR:Q47UA6
STRING:Q47UA6 GeneID:3519378 KEGG:cps:CPS_4978 PATRIC:21472749
BioCyc:CPSY167879:GI48-4979-MONOMER Uniprot:Q47UA6
Length = 936
Score = 501 (181.4 bits), Expect = 1.0e-42, Sum P(2) = 1.0e-42
Identities = 113/273 (41%), Positives = 159/273 (58%)
Query: 779 IDGSSCIYRAFYA--LPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNF 836
+DGSS ++RA++ L + D P GA+ G + M R L K+Y I IFDAKGK F
Sbjct: 20 VDGSSYLFRAYHVPYLQALSTADGQPTGAITGVLNMFRSLKKDYPNGNIIAIFDAKGKTF 79
Query: 837 RNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKH 896
RN ++P YKA R MP +L QI IH+++ A+G P+L+I GVEADDVIGTLAKQA +
Sbjct: 80 RNDMFPEYKANRPPMPDDLRTQIAPIHEIITAMGLPLLVIPGVEADDVIGTLAKQA-DEL 138
Query: 897 NLKVIISTNDKDMAQLVSNKIALINN-NKIH-DRTTIISRFGVSPEKIVDYFSLIGDMSD 954
++ +IST DKDMAQLV+ + LIN + D + +FGV P++I+DY +L+GD D
Sbjct: 139 GIETVISTGDKDMAQLVTKHVRLINTMTDVEMDVAGVSEKFGVRPDQIIDYLALMGDKVD 198
Query: 955 NLPGVKKIGPKTAVKLLNQYNSLEXXXXXXXXXXXXXXXXLRFALNWLPXXXXXXXXXXD 1014
N+PGV K GPKTAVK L ++ +++ LR AL LP D
Sbjct: 199 NIPGVVKCGPKTAVKWLAEHGTMQEVIANADKVKGKIGENLRDALEQLPLSYQLATIKCD 258
Query: 1015 CDLTKNIVSIPESLILQPKDEKLLMQLFNKYNI 1047
+L + + S +P D L +L+ K+ +
Sbjct: 259 VELEQTAGELAAS---EP-DVDALAELYQKFEL 287
Score = 37 (18.1 bits), Expect = 1.0e-42, Sum P(2) = 1.0e-42
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 1034 DEKLLMQLFNKYNIPLKNHDDNISDENYDIDCSDAKSLFNLTN 1076
D LL Q ++ + ++ HD+ I + + DI L L N
Sbjct: 871 DSWLLEQNDDRIKMTMQVHDELIFEIHQDIVEETTAKLVTLMN 913
>TIGR_CMR|SO_4669 [details] [associations]
symbol:SO_4669 "DNA polymerase I" species:211586
"Shewanella oneidensis MR-1" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK
TIGRFAMs:TIGR00593 HSSP:P00582 HOGENOM:HOG000020999
RefSeq:NP_720184.1 ProteinModelPortal:Q8E8J5 GeneID:1172251
KEGG:son:SO_4669 PATRIC:23529003 ProtClustDB:CLSK907759
Uniprot:Q8E8J5
Length = 922
Score = 486 (176.1 bits), Expect = 2.1e-41, Sum P(2) = 2.1e-41
Identities = 95/201 (47%), Positives = 138/201 (68%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DGSS +YRA+YA P + N GA+YG + MLR L Y+ ++IA +FDAKGK FRN
Sbjct: 12 VDGSSYLYRAYYAPPHLTNSKGEATGAVYGVVNMLRSLLSRYQPSHIAVVFDAKGKTFRN 71
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L QI +H++++A+G P++ I GVEADDVIGT+A++A ++ N
Sbjct: 72 DLYQEYKAHRPPMPDDLRSQIEPLHRIIRALGLPLISIPGVEADDVIGTIARRA-SRENR 130
Query: 899 KVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
V+IST DKDMAQLV I LIN + I + +++GV P++I+D+ +L+GD +DN+
Sbjct: 131 AVLISTGDKDMAQLVDENITLINTMTDTIMGPEEVAAKYGVGPDRIIDFLALMGDKADNI 190
Query: 957 PGVKKIGPKTAVKLLNQYNSL 977
PG+ +G KTA+ +L S+
Sbjct: 191 PGLPGVGEKTALAMLTGAGSV 211
Score = 40 (19.1 bits), Expect = 2.1e-41, Sum P(2) = 2.1e-41
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 1151 GGPIQIDRGFVLHNITN--EKSPIFNSTLNIASDISLTTSRDI 1191
G P Q+D+ F L + E + + N+ DIS+ + I
Sbjct: 384 GAPQQLDKQFALEKLRPILEDAKLKKVGQNLKYDISVLANAGI 426
>UNIPROTKB|Q48PV5 [details] [associations]
symbol:polA "DNA polymerase I" species:264730 "Pseudomonas
syringae pv. phaseolicola 1448A" [GO:0008408 "3'-5' exonuclease
activity" evidence=ISS] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 SUPFAM:SSF53098
EMBL:CP000058 GenomeReviews:CP000058_GR GO:GO:0008408 GO:GO:0003887
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK
ProtClustDB:PRK05755 TIGRFAMs:TIGR00593 HOGENOM:HOG000020999
RefSeq:YP_272564.1 ProteinModelPortal:Q48PV5 SMR:Q48PV5
STRING:Q48PV5 GeneID:3558423 KEGG:psp:PSPPH_0259 PATRIC:19969530
Uniprot:Q48PV5
Length = 921
Score = 474 (171.9 bits), Expect = 2.5e-41, P = 2.5e-41
Identities = 97/195 (49%), Positives = 127/195 (65%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
IDGSS +YRAF+ALP + P GA+ G + ML+ L + Y + A +FDAKG FR+
Sbjct: 9 IDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRRQYPDSPFAVVFDAKGGTFRD 68
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LY YKA R MP +L +Q++L+H VK +G+P+L ++GVEADDVIGTLA+ +
Sbjct: 69 ALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPLLCVEGVEADDVIGTLARSSAAADR- 127
Query: 899 KVIISTNDKDMAQLVSNKIALINN--NKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
VIIST DKDMAQLV I L+N D + +FGV PE I+DY +L+GD DN+
Sbjct: 128 PVIISTGDKDMAQLVDGHITLVNTMTGSALDVAGVKEKFGVGPEHIIDYLALMGDKVDNI 187
Query: 957 PGVKKIGPKTAVKLL 971
PGV +G KTAV LL
Sbjct: 188 PGVPGVGEKTAVGLL 202
>TIGR_CMR|GSU_0541 [details] [associations]
symbol:GSU_0541 "DNA polymerase I" species:243231
"Geobacter sulfurreducens PCA" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0006308 "DNA catabolic process" evidence=ISS]
[GO:0008409 "5'-3' exonuclease activity" evidence=ISS]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00278 SMART:SM00279 SMART:SM00474 SMART:SM00475
SMART:SM00482 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887 GO:GO:0008409
SUPFAM:SSF47807 HOGENOM:HOG000020998 KO:K02335 OMA:EQRRYAK
ProtClustDB:PRK05755 TIGRFAMs:TIGR00593 HSSP:P00582
RefSeq:NP_951599.1 ProteinModelPortal:Q74FR5 SMR:Q74FR5
GeneID:2685802 KEGG:gsu:GSU0541 PATRIC:22023837
BioCyc:GSUL243231:GH27-525-MONOMER Uniprot:Q74FR5
Length = 891
Score = 443 (161.0 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 100/272 (36%), Positives = 153/272 (56%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKN-FR 837
IDGSS IYRA++A+ + + FP ALYG +ML K+ K++ +A +FD KG+ FR
Sbjct: 9 IDGSSYIYRAYFAIRHLSSPAGFPTNALYGFTQMLLKVIKDHHPGRLAVVFD-KGRTTFR 67
Query: 838 NILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHN 897
+YP YKA R MP +L+ QI I +MV+A P+L ++G EADD+IGT+A++ +
Sbjct: 68 TEIYPDYKANRAAMPDDLVPQIGPIKEMVRAFSIPVLELEGYEADDIIGTIARRC-EEQG 126
Query: 898 LKVIISTNDKDMAQLVSNKIALINNNKIHDRTT----IISRFGVSPEKIVDYFSLIGDMS 953
L+ ++ T DKD+ Q+VS++I L++ K DR + ++ RFGV P +++D L GD S
Sbjct: 127 LEAVVVTGDKDLMQIVSDRIRLLDTMK--DRVSGIPEVVERFGVGPGQVIDILGLAGDTS 184
Query: 954 DNLPGVKKIGPKTAVKLLNQYNSLEXXXXXXXXXXXXXXXXLRFALNWLPXXXXXXXXXX 1013
DN+PGV IG KTA KL+ ++ SL+ LR
Sbjct: 185 DNIPGVPGIGEKTATKLIQEFGSLDALLERAGEVKGKTGERLREFAEQARLSRRLATIVR 244
Query: 1014 DCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 1045
D L ++ ++ + P D + L +LF +Y
Sbjct: 245 DVPLDFDL----DAFAVAPADNRRLAELFKEY 272
Score = 38 (18.4 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 1151 GGPIQIDRGFVLHNI 1165
G P Q+DR VL +
Sbjct: 353 GAPAQLDRTLVLEGL 367
Score = 37 (18.1 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 1228 LIVDANSEVIFNVPCEQR 1245
LI+ + E++F VP +R
Sbjct: 839 LIMQVHDELVFEVPEGER 856
>TIGR_CMR|ECH_0080 [details] [associations]
symbol:ECH_0080 "DNA polymerase I" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447 SMART:SM00278
SMART:SM00279 SMART:SM00475 SMART:SM00482 GO:GO:0003677
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006260 GO:GO:0006281
SUPFAM:SSF53098 GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258
SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK TIGRFAMs:TIGR00593
HOGENOM:HOG000020999 RefSeq:YP_506910.1 ProteinModelPortal:Q2GI23
STRING:Q2GI23 GeneID:3927608 KEGG:ech:ECH_0080 PATRIC:20575721
BioCyc:ECHA205920:GJNR-80-MONOMER Uniprot:Q2GI23
Length = 944
Score = 410 (149.4 bits), Expect = 2.4e-34, P = 2.4e-34
Identities = 81/202 (40%), Positives = 122/202 (60%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
ID ++RA+YALP++R P+G +YG I + K + + Y+ +FD KNFR+
Sbjct: 7 IDAYGLLFRAYYALPNLRTSYGLPIGGVYGFINIFLKYIEKHVTDYLVVVFDTGSKNFRH 66
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
+YP YK R K+P +LI Q +L+ + V A + G EADDVI TL+K+ +
Sbjct: 67 NIYPEYKGNRPKLPDDLIPQFSLLREAVNAFNIASEEVVGYEADDVIATLSKKYCKLQGV 126
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
KV + T+DKD+ QL+ I + + NK + + S+FG+S +++D+ SL GD SDN+
Sbjct: 127 KVTVVTSDKDLLQLLKYNICIFDPIKNKYIEEEDVQSKFGISSNQLLDFLSLTGDASDNV 186
Query: 957 PGVKKIGPKTAVKLLNQYNSLE 978
PG+ IG KTA KLLN + SL+
Sbjct: 187 PGIPGIGVKTAAKLLNDFGSLD 208
>UNIPROTKB|Q9KUP8 [details] [associations]
symbol:VC_0467 "UPF0301 protein VC_0467" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
EMBL:AE003852 GenomeReviews:AE003852_GR eggNOG:COG1678 KO:K07735
ProtClustDB:PRK00228 HAMAP:MF_00758 InterPro:IPR003774 Pfam:PF02622
OMA:VETGRGF PIR:H82318 RefSeq:NP_230121.2 PDB:2AJ2 PDB:2HAF
PDBsum:2AJ2 PDBsum:2HAF ProteinModelPortal:Q9KUP8 SMR:Q9KUP8
DNASU:2615129 GeneID:2615129 KEGG:vch:VC0467 PATRIC:20080029
EvolutionaryTrace:Q9KUP8 Uniprot:Q9KUP8
Length = 187
Score = 373 (136.4 bits), Expect = 5.4e-33, P = 5.4e-33
Identities = 72/185 (38%), Positives = 109/185 (58%)
Query: 1073 NLTNHFLIAMPGFSTPFFDGAVVYLCEHNSNGAFGIIINKPTDMTXXXXXXXXXXXXXXX 1132
NLTNHFL+AMP P+F +V+Y+CEHN +GA G++IN P D+T
Sbjct: 2 NLTNHFLVAMPSMKDPYFKRSVIYICEHNQDGAMGLMINAPIDITVGGMLKQVDIEPAY- 60
Query: 1133 VPNTKEFILEKTTKTIMFGGPIQIDRGFVLHNITNEKSPIFNSTLNIASDISLTTSRDIL 1192
P + + E K + GGP+ DRGF+LH + + S++ + DI++TTS+DIL
Sbjct: 61 -PQSHQ---ENLKKPVFNGGPVSEDRGFILHRPRDH----YESSMKMTDDIAVTTSKDIL 112
Query: 1193 ESFSRGDGPSQLLISLGCSGWGAGQLEEEIMNNHWLIVDANSEVIFNVPCEQRFFAAVKL 1252
P +++LG SGW AGQLE E+ N WL ++A+ E+IFN P +++ A++
Sbjct: 113 TVLGTEAEPEGYIVALGYSGWSAGQLEVELTENSWLTIEADPELIFNTPVHEKWQKAIQK 172
Query: 1253 LGVNP 1257
LG++P
Sbjct: 173 LGISP 177
>TIGR_CMR|VC_0467 [details] [associations]
symbol:VC_0467 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] EMBL:AE003852
GenomeReviews:AE003852_GR eggNOG:COG1678 KO:K07735
ProtClustDB:PRK00228 HAMAP:MF_00758 InterPro:IPR003774 Pfam:PF02622
OMA:VETGRGF PIR:H82318 RefSeq:NP_230121.2 PDB:2AJ2 PDB:2HAF
PDBsum:2AJ2 PDBsum:2HAF ProteinModelPortal:Q9KUP8 SMR:Q9KUP8
DNASU:2615129 GeneID:2615129 KEGG:vch:VC0467 PATRIC:20080029
EvolutionaryTrace:Q9KUP8 Uniprot:Q9KUP8
Length = 187
Score = 373 (136.4 bits), Expect = 5.4e-33, P = 5.4e-33
Identities = 72/185 (38%), Positives = 109/185 (58%)
Query: 1073 NLTNHFLIAMPGFSTPFFDGAVVYLCEHNSNGAFGIIINKPTDMTXXXXXXXXXXXXXXX 1132
NLTNHFL+AMP P+F +V+Y+CEHN +GA G++IN P D+T
Sbjct: 2 NLTNHFLVAMPSMKDPYFKRSVIYICEHNQDGAMGLMINAPIDITVGGMLKQVDIEPAY- 60
Query: 1133 VPNTKEFILEKTTKTIMFGGPIQIDRGFVLHNITNEKSPIFNSTLNIASDISLTTSRDIL 1192
P + + E K + GGP+ DRGF+LH + + S++ + DI++TTS+DIL
Sbjct: 61 -PQSHQ---ENLKKPVFNGGPVSEDRGFILHRPRDH----YESSMKMTDDIAVTTSKDIL 112
Query: 1193 ESFSRGDGPSQLLISLGCSGWGAGQLEEEIMNNHWLIVDANSEVIFNVPCEQRFFAAVKL 1252
P +++LG SGW AGQLE E+ N WL ++A+ E+IFN P +++ A++
Sbjct: 113 TVLGTEAEPEGYIVALGYSGWSAGQLEVELTENSWLTIEADPELIFNTPVHEKWQKAIQK 172
Query: 1253 LGVNP 1257
LG++P
Sbjct: 173 LGISP 177
>UNIPROTKB|Q0C2B4 [details] [associations]
symbol:polA "DNA polymerase I" species:228405 "Hyphomonas
neptunium ATCC 15444" [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 SUPFAM:SSF53098
GO:GO:0008408 EMBL:CP000158 GenomeReviews:CP000158_GR GO:GO:0003887
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK
TIGRFAMs:TIGR00593 RefSeq:YP_760129.1 ProteinModelPortal:Q0C2B4
STRING:Q0C2B4 GeneID:4289511 KEGG:hne:HNE_1412 PATRIC:32215643
HOGENOM:HOG000020999 BioCyc:HNEP228405:GI69-1446-MONOMER
Uniprot:Q0C2B4
Length = 929
Score = 396 (144.5 bits), Expect = 7.4e-33, P = 7.4e-33
Identities = 89/207 (42%), Positives = 125/207 (60%)
Query: 779 IDGSSCIYRAFYALPDI-RNIDNFPVGALYGTIKMLRKLYKNY----RATYIACIFDAKG 833
ID S+ ++RAF+ALP + R D PVGA+ G ML KL ++ R T+ ACIFDA G
Sbjct: 15 IDASAYVFRAFHALPPLTRASDGLPVGAVAGFCNMLFKLLEDLKGKERPTHFACIFDASG 74
Query: 834 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 893
FRN +YP YKA R P L+ Q L+ + A + G EADD+I T A+ A
Sbjct: 75 DTFRNEIYPLYKANRSDPPEELVPQFPLVRRAAVAFAAHAIEQTGFEADDLIATYARLAE 134
Query: 894 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 951
K +V I ++DKD+ QL+++K+ +++ NK+ R +I +FGV PE +VD SL GD
Sbjct: 135 AK-GARVTIVSSDKDLMQLITDKVLMLDPMKNKLLGRDDVIEKFGVGPEGVVDVQSLSGD 193
Query: 952 MSDNLPGVKKIGPKTAVKLLNQYNSLE 978
DN+PG IG KTA +LL +Y ++E
Sbjct: 194 SVDNVPGAPGIGIKTAAQLLGEYGTVE 220
>UNIPROTKB|Q605E8 [details] [associations]
symbol:MCA2336 "UPF0301 protein MCA2336 2" species:243233
"Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
EMBL:AE017282 GenomeReviews:AE017282_GR eggNOG:COG1678 KO:K07735
HAMAP:MF_00758 InterPro:IPR003774 Pfam:PF02622 HSSP:Q8EBZ9
HOGENOM:HOG000281193 OMA:VETGRGF RefSeq:YP_114752.1
ProteinModelPortal:Q605E8 GeneID:3102526 KEGG:mca:MCA2336
PATRIC:22608530 Uniprot:Q605E8
Length = 188
Score = 368 (134.6 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 77/183 (42%), Positives = 115/183 (62%)
Query: 1074 LTNHFLIAMPGFSTPFFDGAVVYLCEHNSNGAFGIIINKPTDMTXXXXXXXXXXXXXXXV 1133
L NHFLIAMPG + P F V +C+HN++GA GIIIN+P+++
Sbjct: 8 LANHFLIAMPGLTDPHFAKTVTLVCQHNADGALGIIINRPSELKLSDIMRQMEI------ 61
Query: 1134 PNTKEFILEKTTKTIMFGGPIQIDRGFVLHNITNEKSPIFNSTLNIASDISLTTSRDILE 1193
+ K + E + FGGP+ +RGF+LH E + ++ STL ++ ++LTTSRDILE
Sbjct: 62 -DLK--VAELGDLPVFFGGPVHPERGFILH----EPATVWASTLVVSERLALTTSRDILE 114
Query: 1194 SFSRGDGPSQLLISLGCSGWGAGQLEEEIMNNHWLIVDANSEVIFNVPCEQRFFAAVKLL 1253
+ RG+GP ++L++LG +GWG GQLE EI++N WL +++ VIF P +R+ AA L+
Sbjct: 115 AVGRGEGPRRMLLALGYAGWGQGQLEREIIDNSWLNAPSDNAVIFEHPPGRRWKAAADLV 174
Query: 1254 GVN 1256
GV+
Sbjct: 175 GVD 177
>TIGR_CMR|CBU_1363 [details] [associations]
symbol:CBU_1363 "exodeoxyribonuclease I, putative"
species:227377 "Coxiella burnetii RSA 493" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0006308 "DNA catabolic process" evidence=ISS]
[GO:0008852 "exodeoxyribonuclease I activity" evidence=ISS]
InterPro:IPR012337 InterPro:IPR013620 InterPro:IPR023607
Pfam:PF08411 PIRSF:PIRSF000977 Pfam:PF00929 GO:GO:0006281
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR013520 SUPFAM:SSF53098 KO:K01141 GO:GO:0008852
RefSeq:NP_820352.1 HSSP:P04995 ProteinModelPortal:Q83BX4
GeneID:1209269 KEGG:cbu:CBU_1363 PATRIC:17931469
HOGENOM:HOG000065258 OMA:KAQMEFQ ProtClustDB:CLSK914731
BioCyc:CBUR227377:GJ7S-1353-MONOMER Uniprot:Q83BX4
Length = 458
Score = 361 (132.1 bits), Expect = 1.0e-31, P = 1.0e-31
Identities = 83/213 (38%), Positives = 122/213 (57%)
Query: 306 LHNGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRA 365
+ N T+L+YD ET GLN D+ QFAAIRTD LN ++ +L + PD +P P A
Sbjct: 1 MSNHRKTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNRHEILI-RLNPDVIPSPEA 59
Query: 366 CLITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINP 425
+I + + L+ G E + I ++ PGTISVGYNT+ FDDE RF F+RNL+ P
Sbjct: 60 MIIHRFSIDQMLS-GKAEIEAIREIHQLVNTPGTISVGYNTLGFDDEFLRFSFYRNLLPP 118
Query: 426 YEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKP-SFKLEHLSFVNNLSHKKAHD 484
Y ++ N C R DL + +Y+ P + WP P KLE+LS N L+ +AH+
Sbjct: 119 YTHQYDNFCGRMDLYPLTILYYLFKPNALNWP-----DPFDLKLENLSKANQLAEGQAHN 173
Query: 485 ALSDVRATLGLARLIRNNNPRLFNFILSLRKKK 517
A+ DV A++ LA+L+ N ++ +++ KK
Sbjct: 174 AMVDVEASVALAKLLMNQEA-MWRYVIGYFDKK 205
>UNIPROTKB|Q3ABL3 [details] [associations]
symbol:polA "DNA polymerase" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR003583 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR018320 InterPro:IPR019760 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367 Pfam:PF02739
PRINTS:PR00868 PROSITE:PS00447 SMART:SM00278 SMART:SM00279
SMART:SM00475 SMART:SM00482 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006260 GO:GO:0006281
SUPFAM:SSF53098 GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258
SUPFAM:SSF47807 HOGENOM:HOG000020998 KO:K02335 OMA:EQRRYAK
TIGRFAMs:TIGR00593 RefSeq:YP_360471.1 ProteinModelPortal:Q3ABL3
STRING:Q3ABL3 GeneID:3728305 KEGG:chy:CHY_1650 PATRIC:21276421
BioCyc:CHYD246194:GJCN-1649-MONOMER Uniprot:Q3ABL3
Length = 831
Score = 371 (135.7 bits), Expect = 2.9e-30, P = 2.9e-30
Identities = 78/206 (37%), Positives = 122/206 (59%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DG+S ++RAF+ALP ++ P GA+YG + ML ++ K+ + Y+A FD K FR
Sbjct: 7 VDGNSLLHRAFFALPPLKTTKGEPTGAVYGFLTMLFRVIKDEKPEYLAVAFDISRKTFRT 66
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
+ +YK RK+ P L+ Q L+ +++K + P + + G EADD+IG L++ A
Sbjct: 67 EQFTAYKGHRKEAPDELVPQFALVREVLKVLNVPYIELDGYEADDIIGHLSR-AFAGQGH 125
Query: 899 KVIISTNDKDMAQLVSNK-IALINNNKIH-----DRTTIISRFGVSPEKIVDYFSLIGDM 952
+V+I T D+DM QLV K + + I D I+ +G+ P+++VD L+GD
Sbjct: 126 EVVIYTADRDMLQLVDEKTVVYLTKKGITELVKMDLAAILENYGLKPKQLVDVKGLMGDP 185
Query: 953 SDNLPGVKKIGPKTAVKLLNQYNSLE 978
SDN+PGV IG KTA+ L+ Y S+E
Sbjct: 186 SDNIPGVPGIGEKTALDLIKTYGSVE 211
>TIGR_CMR|CHY_1650 [details] [associations]
symbol:CHY_1650 "DNA polymerase I" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] InterPro:IPR001098
InterPro:IPR002298 InterPro:IPR002421 InterPro:IPR003583
InterPro:IPR008918 InterPro:IPR012337 InterPro:IPR018320
InterPro:IPR019760 InterPro:IPR020045 InterPro:IPR020046
Pfam:PF00476 Pfam:PF01367 Pfam:PF02739 PRINTS:PR00868
PROSITE:PS00447 SMART:SM00278 SMART:SM00279 SMART:SM00475
SMART:SM00482 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006260 GO:GO:0006281 SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 HOGENOM:HOG000020998
KO:K02335 OMA:EQRRYAK TIGRFAMs:TIGR00593 RefSeq:YP_360471.1
ProteinModelPortal:Q3ABL3 STRING:Q3ABL3 GeneID:3728305
KEGG:chy:CHY_1650 PATRIC:21276421
BioCyc:CHYD246194:GJCN-1649-MONOMER Uniprot:Q3ABL3
Length = 831
Score = 371 (135.7 bits), Expect = 2.9e-30, P = 2.9e-30
Identities = 78/206 (37%), Positives = 122/206 (59%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DG+S ++RAF+ALP ++ P GA+YG + ML ++ K+ + Y+A FD K FR
Sbjct: 7 VDGNSLLHRAFFALPPLKTTKGEPTGAVYGFLTMLFRVIKDEKPEYLAVAFDISRKTFRT 66
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
+ +YK RK+ P L+ Q L+ +++K + P + + G EADD+IG L++ A
Sbjct: 67 EQFTAYKGHRKEAPDELVPQFALVREVLKVLNVPYIELDGYEADDIIGHLSR-AFAGQGH 125
Query: 899 KVIISTNDKDMAQLVSNK-IALINNNKIH-----DRTTIISRFGVSPEKIVDYFSLIGDM 952
+V+I T D+DM QLV K + + I D I+ +G+ P+++VD L+GD
Sbjct: 126 EVVIYTADRDMLQLVDEKTVVYLTKKGITELVKMDLAAILENYGLKPKQLVDVKGLMGDP 185
Query: 953 SDNLPGVKKIGPKTAVKLLNQYNSLE 978
SDN+PGV IG KTA+ L+ Y S+E
Sbjct: 186 SDNIPGVPGIGEKTALDLIKTYGSVE 211
>TIGR_CMR|SPO_3844 [details] [associations]
symbol:SPO_3844 "DNA polymerase I" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR018320 InterPro:IPR019760 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367 Pfam:PF01612
Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447 SMART:SM00279
SMART:SM00474 SMART:SM00475 SMART:SM00482 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0006260 GO:GO:0005622
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887 GO:GO:0008409
SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755
TIGRFAMs:TIGR00593 HOGENOM:HOG000020999 RefSeq:YP_169032.1
ProteinModelPortal:Q5LLS7 GeneID:3195865 KEGG:sil:SPO3844
PATRIC:23381191 Uniprot:Q5LLS7
Length = 933
Score = 370 (135.3 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 86/207 (41%), Positives = 121/207 (58%)
Query: 779 IDGSSCIYRAFYALPDI-RNIDNFPVGALYGTIKMLRKLYKNYRA----TYIACIFDAKG 833
IDGS+ I+RA++ALP + R D P+GA+ G ML++ T++A IFD
Sbjct: 13 IDGSAFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLQRYVDGDHGPDAPTHLAVIFDKGS 72
Query: 834 KNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAV 893
FRN LY YKA R+ MP +L QI L +A P ++G EADD+I TL+ QA
Sbjct: 73 HTFRNDLYDLYKANREAMPEDLRPQIPLTRAATEAFNIPCKELEGYEADDIIATLSNQAR 132
Query: 894 TKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGD 951
+V I ++DKD+ QLV + + + + NK DR + +FGV P+++VD +L GD
Sbjct: 133 DAGG-RVTIVSSDKDLMQLVGDGVEMFDAMKNKRIDRDGVFEKFGVFPDRVVDVQALAGD 191
Query: 952 MSDNLPGVKKIGPKTAVKLLNQYNSLE 978
DN+PG IG KTA L+N+Y SLE
Sbjct: 192 SVDNVPGAPGIGVKTAALLINEYGSLE 218
>TIGR_CMR|NSE_0675 [details] [associations]
symbol:NSE_0675 "DNA polymerase I" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR020045 InterPro:IPR020046
Pfam:PF00476 Pfam:PF01367 Pfam:PF02739 PRINTS:PR00868 SMART:SM00278
SMART:SM00279 SMART:SM00475 SMART:SM00482 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 SUPFAM:SSF53098 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0003887 GO:GO:0008409
eggNOG:COG0258 SUPFAM:SSF47807 HOGENOM:HOG000020998 KO:K02335
OMA:EQRRYAK ProtClustDB:PRK05755 RefSeq:YP_506553.1
ProteinModelPortal:Q2GD93 STRING:Q2GD93 GeneID:3932157
KEGG:nse:NSE_0675 PATRIC:22681369
BioCyc:NSEN222891:GHFU-689-MONOMER Uniprot:Q2GD93
Length = 829
Score = 361 (132.1 bits), Expect = 4.8e-29, Sum P(2) = 4.8e-29
Identities = 79/202 (39%), Positives = 122/202 (60%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
ID + ++ A++ALP++ + + PVGA+YG + +L K + + Y+ D FR
Sbjct: 8 IDAYNFLFSAYFALPNLTH-NELPVGAVYGFLNILLKHLRT-KPEYLVVALDHGKSTFRE 65
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
+Y +YKA R +P NL Q L+ + V + L I+G EADDVI TL ++ +K +L
Sbjct: 66 TIYNNYKANRPPVPGNLTPQFALLRECVDVLNLNPLEIEGFEADDVIATLVRK-FSKSDL 124
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
K+ I + DKD+ QLV+ + +IN N+I + +FGV P ++ D+ SL+GD SDN+
Sbjct: 125 KIKILSTDKDLMQLVNENVHVINPIKNRIIGVNEVKEKFGVFPTQMTDFLSLVGDTSDNI 184
Query: 957 PGVKKIGPKTAVKLLNQYNSLE 978
PGV IG KTA KLLN + ++E
Sbjct: 185 PGVPGIGVKTAAKLLNTFGAIE 206
Score = 51 (23.0 bits), Expect = 4.8e-29, Sum P(2) = 4.8e-29
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 1264 FGNTLIKHAK--PLKIIHSITNKAKFNEISKLVEKWKPN-TVKKMELKKIINTKHQTIVA 1320
F N + K K P +++H + K N+ S L K++ T+ K K I +T+ +I+
Sbjct: 270 FKNLIPKLVKSTPKQLLHITKSTNKINDFS-LSAKYEGQITIYKNGEKTIFSTREASIIG 328
Query: 1321 YTN 1323
N
Sbjct: 329 DLN 331
Score = 42 (19.8 bits), Expect = 4.2e-28, Sum P(2) = 4.2e-28
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 1019 KNIVSIPESLILQPKDEKLLMQLFNKYNIPLKNHDDNI 1056
K I S E+ I+ D +L LF +I H DNI
Sbjct: 316 KTIFSTREASIIG--DLNMLQDLFTDRSIKKIFHSDNI 351
>TIGR_CMR|APH_0001 [details] [associations]
symbol:APH_0001 "DNA polymerase I" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR018320 InterPro:IPR019760 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367 Pfam:PF02739
PRINTS:PR00868 PROSITE:PS00447 SMART:SM00279 SMART:SM00475
SMART:SM00482 GO:GO:0003677 GO:GO:0006260 EMBL:CP000235
GenomeReviews:CP000235_GR SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK
ProtClustDB:PRK05755 TIGRFAMs:TIGR00593 HOGENOM:HOG000020999
RefSeq:YP_504640.1 ProteinModelPortal:Q2GLW1 STRING:Q2GLW1
GeneID:3930741 KEGG:aph:APH_0001 PATRIC:20948540
BioCyc:APHA212042:GHPM-43-MONOMER Uniprot:Q2GLW1
Length = 853
Score = 368 (134.6 bits), Expect = 1.7e-28, Sum P(2) = 1.7e-28
Identities = 79/202 (39%), Positives = 120/202 (59%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+D ++RA+YALP + NFPVG +YG I +L K + A Y+ +FD+ KNFR+
Sbjct: 10 VDAYGFLFRAYYALPGLSTSYNFPVGGVYGFINILLKHLSFHDADYLVVVFDSGSKNFRH 69
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
+Y YK R K P +L LQ + + V+A + EADDVI TL + + N+
Sbjct: 70 TMYSEYKTNRPKAPEDLSLQCAPLREAVEAFNIVSEEVLNYEADDVIATLCTKYASS-NV 128
Query: 899 KVIISTNDKDMAQLVSNKIALINNNKIHDRTT--IISRFGVSPEKIVDYFSLIGDMSDNL 956
V I + DKD+ QL+++ + + + K T ++ +FGVS +K++D +L GD SDN+
Sbjct: 129 GVRILSADKDLLQLLNDNVQVYDPIKSRYLTNEYVLEKFGVSSDKLLDAMALTGDASDNI 188
Query: 957 PGVKKIGPKTAVKLLNQYNSLE 978
PGV IG KTA KL+N++ SL+
Sbjct: 189 PGVPSIGVKTAAKLINEFGSLD 210
Score = 39 (18.8 bits), Expect = 1.7e-28, Sum P(2) = 1.7e-28
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 1133 VPNTKEFILEKTTKTIMFGGPIQIDRGFV 1161
+ +EF LE+ ++ + G I++++GF+
Sbjct: 308 IDKLEEF-LEQCQRSGLLGLYIEVEQGFI 335
>UNIPROTKB|Q5LX84 [details] [associations]
symbol:SPO0296 "UPF0301 protein SPO0296" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] EMBL:CP000031
GenomeReviews:CP000031_GR eggNOG:COG1678 KO:K07735 HAMAP:MF_00758
InterPro:IPR003774 Pfam:PF02622 HSSP:Q8EBZ9 HOGENOM:HOG000281193
OMA:VETGRGF RefSeq:YP_165559.1 ProteinModelPortal:Q5LX84
GeneID:3195560 KEGG:sil:SPO0296 PATRIC:23373845 Uniprot:Q5LX84
Length = 184
Score = 326 (119.8 bits), Expect = 5.6e-28, P = 5.6e-28
Identities = 67/194 (34%), Positives = 111/194 (57%)
Query: 1073 NLTNHFLIAMPGFSTPFFDGAVVYLCEHNSNGAFGIIINKPTDMTXXXXXXXXXXXXXXX 1132
+LT LIAMPG P F+ +V++LC H +GA G+I+NKP D+
Sbjct: 2 DLTGKLLIAMPGMGDPRFERSVIFLCSHGEDGAMGLIVNKPADLNVSTLLEQLE------ 55
Query: 1133 VPNTKEFILEKTTKTIMFGGPIQIDRGFVLHNITNEKSPIFNSTLNIASDISLTTSRDIL 1192
+P++ + GGP+++ RGFVLH+ + + +L ++ +T + DIL
Sbjct: 56 IPSSSA---AAARAPVRLGGPVEMARGFVLHS-PDYAGKL--QSLKVSDGFVMTATLDIL 109
Query: 1193 ESFSRGDGPSQLLISLGCSGWGAGQLEEEIMNNHWLIVDANSEVIFNVPCEQRFFAAVKL 1252
E +R +GP++ + LG SGWG GQLE EI +N WL DA+ +++F + ++ AA+KL
Sbjct: 110 EDIARDNGPARAALMLGYSGWGPGQLEAEIGDNGWLTADADPDIVFGSRDDGKWEAALKL 169
Query: 1253 LGVNPLIIGIAFGN 1266
LG++ L++ + G+
Sbjct: 170 LGIDALLLSASAGH 183
>TIGR_CMR|SPO_0296 [details] [associations]
symbol:SPO_0296 "conserved hypothetical protein"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
EMBL:CP000031 GenomeReviews:CP000031_GR eggNOG:COG1678 KO:K07735
HAMAP:MF_00758 InterPro:IPR003774 Pfam:PF02622 HSSP:Q8EBZ9
HOGENOM:HOG000281193 OMA:VETGRGF RefSeq:YP_165559.1
ProteinModelPortal:Q5LX84 GeneID:3195560 KEGG:sil:SPO0296
PATRIC:23373845 Uniprot:Q5LX84
Length = 184
Score = 326 (119.8 bits), Expect = 5.6e-28, P = 5.6e-28
Identities = 67/194 (34%), Positives = 111/194 (57%)
Query: 1073 NLTNHFLIAMPGFSTPFFDGAVVYLCEHNSNGAFGIIINKPTDMTXXXXXXXXXXXXXXX 1132
+LT LIAMPG P F+ +V++LC H +GA G+I+NKP D+
Sbjct: 2 DLTGKLLIAMPGMGDPRFERSVIFLCSHGEDGAMGLIVNKPADLNVSTLLEQLE------ 55
Query: 1133 VPNTKEFILEKTTKTIMFGGPIQIDRGFVLHNITNEKSPIFNSTLNIASDISLTTSRDIL 1192
+P++ + GGP+++ RGFVLH+ + + +L ++ +T + DIL
Sbjct: 56 IPSSSA---AAARAPVRLGGPVEMARGFVLHS-PDYAGKL--QSLKVSDGFVMTATLDIL 109
Query: 1193 ESFSRGDGPSQLLISLGCSGWGAGQLEEEIMNNHWLIVDANSEVIFNVPCEQRFFAAVKL 1252
E +R +GP++ + LG SGWG GQLE EI +N WL DA+ +++F + ++ AA+KL
Sbjct: 110 EDIARDNGPARAALMLGYSGWGPGQLEAEIGDNGWLTADADPDIVFGSRDDGKWEAALKL 169
Query: 1253 LGVNPLIIGIAFGN 1266
LG++ L++ + G+
Sbjct: 170 LGIDALLLSASAGH 183
>TIGR_CMR|DET_1391 [details] [associations]
symbol:DET_1391 "DNA-directed DNA polymerase I"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] InterPro:IPR001098
InterPro:IPR002298 InterPro:IPR002421 InterPro:IPR002562
InterPro:IPR003583 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR018320 InterPro:IPR019760 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367 Pfam:PF01612
Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447 SMART:SM00278
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0005622
EMBL:CP000027 GenomeReviews:CP000027_GR SUPFAM:SSF53098
GO:GO:0008408 GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258
SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK TIGRFAMs:TIGR00593
HOGENOM:HOG000020999 RefSeq:YP_182100.1 ProteinModelPortal:Q3Z6P9
STRING:Q3Z6P9 GeneID:3229334 KEGG:det:DET1391 PATRIC:21609809
ProtClustDB:CLSK836946 BioCyc:DETH243164:GJNF-1392-MONOMER
Uniprot:Q3Z6P9
Length = 903
Score = 357 (130.7 bits), Expect = 1.7e-27, Sum P(2) = 1.7e-27
Identities = 79/209 (37%), Positives = 121/209 (57%)
Query: 780 DGSSCIYRAFYALPD--IRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFR 837
DG++ ++RA++ LP IR VGA +G +L K+ + + A FD KG FR
Sbjct: 10 DGTNLVHRAYHVLPPLAIRKTGEV-VGAAFGFASILIKVLTDLKPDCYAISFDRKGPTFR 68
Query: 838 NILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHN 897
+ ++ +YKA R MP L+ Q+ + Q+V A P+ G EADDV+GTLA +A
Sbjct: 69 HEMFKAYKAQRPPMPDELVSQLGRVRQIVDAFNMPVYEQSGFEADDVLGTLATRAAAA-G 127
Query: 898 LKVIISTNDKDMAQLVSNKIALIN--------NNKIHDRTTIISRFGVSPEKIVDYFSLI 949
++VII++ D D QLV I ++ + ++D + +++G+ PE I DY +L+
Sbjct: 128 MEVIIASGDADSMQLVGPDIRILYPGPAGSFASTSLYDEVAVRAKYGLGPEHIADYKALM 187
Query: 950 GDMSDNLPGVKKIGPKTAVKLLNQYNSLE 978
GD SDN+PGV IGPKTA KL+ +Y +E
Sbjct: 188 GDPSDNIPGVPGIGPKTAQKLIEEYGGIE 216
Score = 42 (19.8 bits), Expect = 1.7e-27, Sum P(2) = 1.7e-27
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 1217 QLEEEIMNNHWLIVDANSEVIFNVP 1241
+L+EE + + L++ + E+IF VP
Sbjct: 841 KLKEEKLKSR-LLLQVHDELIFEVP 864
>TIGR_CMR|BA_4831 [details] [associations]
symbol:BA_4831 "DNA polymerase I" species:198094 "Bacillus
anthracis str. Ames" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR018320 InterPro:IPR019760 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367 Pfam:PF02739
PRINTS:PR00868 PROSITE:PS00447 SMART:SM00279 SMART:SM00474
SMART:SM00475 SMART:SM00482 EMBL:AE016879 EMBL:AE017334
GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 SUPFAM:SSF47807 HOGENOM:HOG000020998
KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755 TIGRFAMs:TIGR00593
RefSeq:NP_847034.1 RefSeq:YP_021476.2 HSSP:P52026
ProteinModelPortal:Q81L03 SMR:Q81L03 IntAct:Q81L03
EnsemblBacteria:EBBACT00000010925 EnsemblBacteria:EBBACT00000018409
GeneID:1083984 GeneID:2815024 KEGG:ban:BA_4831 KEGG:bar:GBAA_4831
PATRIC:18787240 BioCyc:BANT261594:GJ7F-4693-MONOMER Uniprot:Q81L03
Length = 877
Score = 352 (129.0 bits), Expect = 2.0e-27, Sum P(2) = 2.0e-27
Identities = 76/206 (36%), Positives = 119/206 (57%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DG++ YRAF+ALP + N A+YG ML ++ + + T++ FDA FR+
Sbjct: 8 VDGNNIAYRAFFALPLLNNDKGIHTNAIYGFTMMLMRILEEEKPTHMLVAFDAGKTTFRH 67
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
Y YK R+K P L Q I +M+ A P ++ EADD++GTLAK+A ++
Sbjct: 68 KTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGTLAKEA-SEQGA 126
Query: 899 KVIISTNDKDMAQLVS-NKIALINNNKI-----HDRTTIISRFGVSPEKIVDYFSLIGDM 952
V + + DKD+ QLVS N + I I + + + ++ +SP++I+D L+GD
Sbjct: 127 SVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQIIDMKGLMGDQ 186
Query: 953 SDNLPGVKKIGPKTAVKLLNQYNSLE 978
SDN+PGV +G KTA+KLL Q+ ++E
Sbjct: 187 SDNIPGVPGVGEKTAIKLLTQFGTVE 212
Score = 46 (21.3 bits), Expect = 2.0e-27, Sum P(2) = 2.0e-27
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 1215 AGQLEEEIMNNHWLIVDANSEVIFNVPCEQRFFAAVKLLGVNPLIIGIAFGNTLIKHAKP 1274
A +LEEE + L++ + E+IF P E+ KL + P ++ A I+ A P
Sbjct: 813 ADRLEEEGLQAR-LLLQVHDELIFEAPKEE----VEKLEKLVPEVMEHA-----IELAVP 862
Query: 1275 LKIIHS 1280
LK+ +S
Sbjct: 863 LKVDYS 868
>UNIPROTKB|Q486M0 [details] [associations]
symbol:CPS_1252 "UPF0301 protein CPS_1252" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] EMBL:CP000083
GenomeReviews:CP000083_GR eggNOG:COG1678 KO:K07735 HAMAP:MF_00758
InterPro:IPR003774 Pfam:PF02622 RefSeq:YP_267995.1 HSSP:Q8EBZ9
ProteinModelPortal:Q486M0 STRING:Q486M0 GeneID:3523289
KEGG:cps:CPS_1252 PATRIC:21465741 HOGENOM:HOG000281193
BioCyc:CPSY167879:GI48-1333-MONOMER Uniprot:Q486M0
Length = 210
Score = 318 (117.0 bits), Expect = 4.0e-27, P = 4.0e-27
Identities = 71/201 (35%), Positives = 108/201 (53%)
Query: 1073 NLTNHFLIAMPGFSTPFFDGAVVYLCEHNSNGAFGIIINKPTDMTXXXXXXXXXXXXXXX 1132
+L N LIAMP P+F+ V Y+CEHN +GA G+IIN P ++T
Sbjct: 3 SLENQLLIAMPSLGDPYFNKTVTYICEHNEDGAMGLIINLPVNITLADLLKQIEPDEGDK 62
Query: 1133 VPN-------TKE-------FILEKTT---KTIMFGGPIQIDRGFVLHNITNEKSPIFNS 1175
N TK + + T + ++ GGPI RGFVLH+ P ++S
Sbjct: 63 TGNVNSNSELTKSDDVNDITLVTDITNSLEQLVLAGGPIAQQRGFVLHS----SQPGWSS 118
Query: 1176 TLNIASDISLTTSRDILESFSRGDGPSQLLISLGCSGWGAGQLEEEIMNNHWLIVDANSE 1235
+L ++ ++ +TTS+DIL + P Q +++LG +GWG GQLE+E+ N WL A+ E
Sbjct: 119 SLVLSKELMITTSKDILMALGTQQAPEQFIVTLGYAGWGPGQLEQELQANSWLTTPADIE 178
Query: 1236 VIFNVPCEQRFFAAVKLLGVN 1256
++F P EQR+ A + LG++
Sbjct: 179 ILFKTPIEQRWKKATEKLGID 199
>TIGR_CMR|CPS_1252 [details] [associations]
symbol:CPS_1252 "conserved hypothetical protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG1678 KO:K07735
HAMAP:MF_00758 InterPro:IPR003774 Pfam:PF02622 RefSeq:YP_267995.1
HSSP:Q8EBZ9 ProteinModelPortal:Q486M0 STRING:Q486M0 GeneID:3523289
KEGG:cps:CPS_1252 PATRIC:21465741 HOGENOM:HOG000281193
BioCyc:CPSY167879:GI48-1333-MONOMER Uniprot:Q486M0
Length = 210
Score = 318 (117.0 bits), Expect = 4.0e-27, P = 4.0e-27
Identities = 71/201 (35%), Positives = 108/201 (53%)
Query: 1073 NLTNHFLIAMPGFSTPFFDGAVVYLCEHNSNGAFGIIINKPTDMTXXXXXXXXXXXXXXX 1132
+L N LIAMP P+F+ V Y+CEHN +GA G+IIN P ++T
Sbjct: 3 SLENQLLIAMPSLGDPYFNKTVTYICEHNEDGAMGLIINLPVNITLADLLKQIEPDEGDK 62
Query: 1133 VPN-------TKE-------FILEKTT---KTIMFGGPIQIDRGFVLHNITNEKSPIFNS 1175
N TK + + T + ++ GGPI RGFVLH+ P ++S
Sbjct: 63 TGNVNSNSELTKSDDVNDITLVTDITNSLEQLVLAGGPIAQQRGFVLHS----SQPGWSS 118
Query: 1176 TLNIASDISLTTSRDILESFSRGDGPSQLLISLGCSGWGAGQLEEEIMNNHWLIVDANSE 1235
+L ++ ++ +TTS+DIL + P Q +++LG +GWG GQLE+E+ N WL A+ E
Sbjct: 119 SLVLSKELMITTSKDILMALGTQQAPEQFIVTLGYAGWGPGQLEQELQANSWLTTPADIE 178
Query: 1236 VIFNVPCEQRFFAAVKLLGVN 1256
++F P EQR+ A + LG++
Sbjct: 179 ILFKTPIEQRWKKATEKLGID 199
>UNIPROTKB|Q87VA2 [details] [associations]
symbol:PSPTO_5037 "UPF0301 protein PSPTO_5037"
species:223283 "Pseudomonas syringae pv. tomato str. DC3000"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] EMBL:AE016853 GenomeReviews:AE016853_GR eggNOG:COG1678
KO:K07735 ProtClustDB:PRK00228 HAMAP:MF_00758 InterPro:IPR003774
Pfam:PF02622 HOGENOM:HOG000281193 OMA:VETGRGF RefSeq:NP_794770.1
ProteinModelPortal:Q87VA2 GeneID:1186722 KEGG:pst:PSPTO_5037
PATRIC:20001600 BioCyc:PSYR223283:GJIX-5105-MONOMER Uniprot:Q87VA2
Length = 190
Score = 312 (114.9 bits), Expect = 1.7e-26, P = 1.7e-26
Identities = 72/193 (37%), Positives = 107/193 (55%)
Query: 1074 LTNHFLIAMPGFSTPFFDGAVVYLCEHNSNGAFGIIINKPTDMTXXXXXXXXXXXXXXXV 1133
L + FLIAMP F + Y+ EHN+NGA G++IN+P +T +
Sbjct: 9 LKHQFLIAMPHMHDENFAQTLTYVVEHNANGAMGLVINRPQSLTLADVLEQLRPE----L 64
Query: 1134 PNTKEFILEKTTKTIMFGGPIQIDRGFVLHNITNEKSPIFNSTLNIASDISLTTSRDILE 1193
P K ++ I GGP+Q DRGFVLH F +T+++ ISL+TS+D+L
Sbjct: 65 PAPKR--CQEIA--IHAGGPVQTDRGFVLH----PSGQTFQATVDLPGGISLSTSQDVLF 116
Query: 1194 SFSRGDGPSQLLISLGCSGWGAGQLEEEIMNNHWLIVDANSEVIFNVPCEQRFFAAVKLL 1253
S + G GP Q +I+LG +GW AGQL+ E+ +N WL + ++F+V +QR AA + L
Sbjct: 117 SIADGYGPDQNVITLGYAGWDAGQLDAEMADNAWLTCSFDPAILFDVDSDQRLDAAARRL 176
Query: 1254 GVNPLIIGIAFGN 1266
G+N +I G+
Sbjct: 177 GINLALISTQAGH 189
>UNIPROTKB|Q8EBZ9 [details] [associations]
symbol:SO_3346 "UPF0301 protein SO_3346" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG1678 KO:K07735 HAMAP:MF_00758
InterPro:IPR003774 Pfam:PF02622 HOGENOM:HOG000281193 OMA:VETGRGF
RefSeq:NP_718900.1 PDB:2GZO PDBsum:2GZO ProteinModelPortal:Q8EBZ9
SMR:Q8EBZ9 GeneID:1171028 KEGG:son:SO_3346 PATRIC:23526366
ProtClustDB:CLSK907119 EvolutionaryTrace:Q8EBZ9 Uniprot:Q8EBZ9
Length = 187
Score = 312 (114.9 bits), Expect = 1.7e-26, P = 1.7e-26
Identities = 66/183 (36%), Positives = 105/183 (57%)
Query: 1073 NLTNHFLIAMPGFSTPFFDGAVVYLCEHNSNGAFGIIINKPTDMTXXXXXXXXXXXXXXX 1132
+L NHFLIAMP FF+ V+YLCEH+ GA G++INKP +
Sbjct: 3 SLQNHFLIAMPSLDDTFFERTVIYLCEHDEKGAMGLVINKPLGIEVNSLLEQMD------ 56
Query: 1133 VPNTKEFILEKTTKT-IMFGGPIQIDRGFVLHNITNEKSPIFNSTLNIASDISLTTSRDI 1191
+P T++ + + ++ GGP+ DRGFVLH T++ P + ++ + S + LTTSRD+
Sbjct: 57 LP-TEQVSADLAMGSQVLMGGPVSQDRGFVLH--TSQ--PYWANSTELGSGLMLTTSRDV 111
Query: 1192 LESFSRGDGPSQLLISLGCSGWGAGQLEEEIMNNHWLIVDANSEVIFNVPCEQRFFAAVK 1251
L + P + L++LG +GW QLE+E+ +N WL + A+ ++F++ E R+ A +
Sbjct: 112 LTAIGSKRSPDKFLVALGYAGWSKNQLEQELADNSWLTIPADHALLFDINHEDRWQQASR 171
Query: 1252 LLG 1254
LG
Sbjct: 172 SLG 174
>TIGR_CMR|SO_3346 [details] [associations]
symbol:SO_3346 "conserved hypothetical protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
EMBL:AE014299 GenomeReviews:AE014299_GR eggNOG:COG1678 KO:K07735
HAMAP:MF_00758 InterPro:IPR003774 Pfam:PF02622 HOGENOM:HOG000281193
OMA:VETGRGF RefSeq:NP_718900.1 PDB:2GZO PDBsum:2GZO
ProteinModelPortal:Q8EBZ9 SMR:Q8EBZ9 GeneID:1171028
KEGG:son:SO_3346 PATRIC:23526366 ProtClustDB:CLSK907119
EvolutionaryTrace:Q8EBZ9 Uniprot:Q8EBZ9
Length = 187
Score = 312 (114.9 bits), Expect = 1.7e-26, P = 1.7e-26
Identities = 66/183 (36%), Positives = 105/183 (57%)
Query: 1073 NLTNHFLIAMPGFSTPFFDGAVVYLCEHNSNGAFGIIINKPTDMTXXXXXXXXXXXXXXX 1132
+L NHFLIAMP FF+ V+YLCEH+ GA G++INKP +
Sbjct: 3 SLQNHFLIAMPSLDDTFFERTVIYLCEHDEKGAMGLVINKPLGIEVNSLLEQMD------ 56
Query: 1133 VPNTKEFILEKTTKT-IMFGGPIQIDRGFVLHNITNEKSPIFNSTLNIASDISLTTSRDI 1191
+P T++ + + ++ GGP+ DRGFVLH T++ P + ++ + S + LTTSRD+
Sbjct: 57 LP-TEQVSADLAMGSQVLMGGPVSQDRGFVLH--TSQ--PYWANSTELGSGLMLTTSRDV 111
Query: 1192 LESFSRGDGPSQLLISLGCSGWGAGQLEEEIMNNHWLIVDANSEVIFNVPCEQRFFAAVK 1251
L + P + L++LG +GW QLE+E+ +N WL + A+ ++F++ E R+ A +
Sbjct: 112 LTAIGSKRSPDKFLVALGYAGWSKNQLEQELADNSWLTIPADHALLFDINHEDRWQQASR 171
Query: 1252 LLG 1254
LG
Sbjct: 172 SLG 174
>UNIPROTKB|P0A550 [details] [associations]
symbol:polA "DNA polymerase I" species:1773 "Mycobacterium
tuberculosis" [GO:0005618 "cell wall" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0040007 "growth" evidence=IMP]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447 SMART:SM00278
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0005886 GO:GO:0040007 GO:GO:0005618 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 EMBL:BX842577 GO:GO:0005622
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 KO:K02335 OMA:EQRRYAK
ProtClustDB:PRK05755 TIGRFAMs:TIGR00593 EMBL:L11920 PIR:C70559
RefSeq:NP_216145.1 RefSeq:NP_336121.1 RefSeq:YP_006515018.1
ProteinModelPortal:P0A550 SMR:P0A550 PRIDE:P0A550
EnsemblBacteria:EBMYCT00000000077 EnsemblBacteria:EBMYCT00000072282
GeneID:13316408 GeneID:885074 GeneID:924198 KEGG:mtc:MT1665
KEGG:mtu:Rv1629 KEGG:mtv:RVBD_1629 PATRIC:18125424
TubercuList:Rv1629 HOGENOM:HOG000020997 Uniprot:P0A550
Length = 904
Score = 351 (128.6 bits), Expect = 1.4e-25, Sum P(3) = 1.4e-25
Identities = 89/273 (32%), Positives = 138/273 (50%)
Query: 779 IDGSSCIYRAFYALP--DIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNF 836
+DG+S +RAFYALP + + A+YG ML L ++ T+IA FD + F
Sbjct: 20 LDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLLRDEAPTHIAAAFDVSRQTF 79
Query: 837 RNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKH 896
R YP YKA R P QI++ +++ A+G +L G EADD+I TLA QA +
Sbjct: 80 RLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLATQAENE- 138
Query: 897 NLKVIISTNDKDMAQLVSNKIALINNNK-IHDRT-----TIISRFGVSPEKIVDYFSLIG 950
+V++ T D+D QLVS+ + ++ K + + T ++ ++G++P + D+ +L G
Sbjct: 139 GYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLTPRQYPDFAALRG 198
Query: 951 DMSDNLPGVKKIGPKTAVKLLNQYNSLEXXXXXXXXXXXXXXXXLRFALNWLPXXXXXXX 1010
D SDNLPG+ +G KTA K + +Y SL LR L +
Sbjct: 199 DPSDNLPGIPGVGEKTAAKWIAEYGSLRSLVDNVDAVRGKVGDALRANLASVVRNRELTD 258
Query: 1011 XXXDCDLTKNIVSIPESLILQPKDEKLLMQLFN 1043
D L + P++L LQP D + +LF+
Sbjct: 259 LVRDVPLAQT----PDTLRLQPWDRDHIHRLFD 287
Score = 39 (18.8 bits), Expect = 1.4e-25, Sum P(3) = 1.4e-25
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 1035 EKLLMQLFNKYNIPLKNHDDNISDENYDIDCSDAKSLFNLTNH-FL 1079
++L + LF++ +P + Y D +SLF+ T H FL
Sbjct: 559 KQLQVVLFDELGMPKTKR----TKTGYTTDADALQSLFDKTGHPFL 600
Score = 38 (18.4 bits), Expect = 1.4e-25, Sum P(3) = 1.4e-25
Identities = 20/73 (27%), Positives = 30/73 (41%)
Query: 1183 ISLTTSRDILESFSRGDGPSQLLISLGCSGWGAGQLEEEIMNNHWLIVDANSEVIFNVPC 1242
I R I ++F GDG ++L+ + Q+E IM + L D FN
Sbjct: 655 IRTDAGRRIRDAFVVGDGYAELMTA------DYSQIEMRIMAH--LSGDEGLIEAFNTGE 706
Query: 1243 EQRFFAAVKLLGV 1255
+ F A + GV
Sbjct: 707 DLHSFVASRAFGV 719
>TIGR_CMR|BA_1606 [details] [associations]
symbol:BA_1606 "5'-3' exonuclease family protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0006308 "DNA
catabolic process" evidence=ISS] [GO:0008409 "5'-3' exonuclease
activity" evidence=ISS] InterPro:IPR002421 InterPro:IPR008918
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF01367 Pfam:PF02739
SMART:SM00279 SMART:SM00475 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0008152 GO:GO:0008409
SUPFAM:SSF47807 HOGENOM:HOG000040581 OMA:WRVDLIP HSSP:P19821
RefSeq:NP_844054.1 RefSeq:YP_018229.1 RefSeq:YP_027758.1
ProteinModelPortal:Q81SP1 DNASU:1086492
EnsemblBacteria:EBBACT00000013235 EnsemblBacteria:EBBACT00000016802
EnsemblBacteria:EBBACT00000019831 GeneID:1086492 GeneID:2819739
GeneID:2852182 KEGG:ban:BA_1606 KEGG:bar:GBAA_1606 KEGG:bat:BAS1489
ProtClustDB:CLSK2485152 BioCyc:BANT260799:GJAJ-1563-MONOMER
BioCyc:BANT261594:GJ7F-1628-MONOMER Uniprot:Q81SP1
Length = 288
Score = 296 (109.3 bits), Expect = 8.8e-25, P = 8.8e-25
Identities = 72/209 (34%), Positives = 110/209 (52%)
Query: 779 IDGSSCIYRAFYALPD----IRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK 834
+DG + ++RAFYA ++ D P ++G +K L + T+I +D
Sbjct: 7 VDGMALLFRAFYATSVYGQFMKRQDGTPTNGIHGYMKHLLTAMQAIEPTHIVTCWDMGST 66
Query: 835 NFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVT 894
FR + +YKA R P LI Q +L+ +M + P++ +KG EADD IGTLAKQ
Sbjct: 67 TFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSVPVIGMKGYEADDCIGTLAKQYCN 126
Query: 895 KHNLKVIISTNDKDMAQLVSNKIALI------NNNKIHDRTTIISRFGVSPEKIVDYFSL 948
+ +V I T D D+ QLV + ++ N + + I+ GV P +IV +
Sbjct: 127 E--AEVYILTGDTDLLQLVDKNVTVMLLRKGMGNYEYYTPEKIMEEKGVEPWQIVHAKAF 184
Query: 949 IGDMSDNLPGVKKIGPKTAVKLLNQYNSL 977
+GD SDN PGVK IG KTA KL+ ++ ++
Sbjct: 185 MGDTSDNYPGVKGIGEKTAYKLIQEHGTV 213
>TIGR_CMR|CJE_0383 [details] [associations]
symbol:CJE_0383 "DNA polymerase type I" species:195099
"Campylobacter jejuni RM1221" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0009360 "DNA polymerase III complex"
evidence=ISS] InterPro:IPR001098 InterPro:IPR002298
InterPro:IPR002421 InterPro:IPR002562 InterPro:IPR008918
InterPro:IPR012337 InterPro:IPR018320 InterPro:IPR019760
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 PROSITE:PS00447
SMART:SM00279 SMART:SM00474 SMART:SM00475 SMART:SM00482
GO:GO:0003677 GO:GO:0006260 GO:GO:0005622 EMBL:CP000025
GenomeReviews:CP000025_GR SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807
HOGENOM:HOG000020998 KO:K02335 OMA:EQRRYAK ProtClustDB:PRK05755
TIGRFAMs:TIGR00593 RefSeq:YP_178402.1 ProteinModelPortal:Q5HWD3
STRING:Q5HWD3 GeneID:3231145 KEGG:cjr:CJE0383 PATRIC:20042470
BioCyc:CJEJ195099:GJC0-388-MONOMER Uniprot:Q5HWD3
Length = 879
Score = 314 (115.6 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 71/204 (34%), Positives = 115/204 (56%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
ID +R +YAL D +N G + G + L +++ YI D+KGK FR+
Sbjct: 7 IDTFGFFFRLYYALKDFKNSQGQASGMISGFANFIYSLKNEHKSDYIVFALDSKGKTFRS 66
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
+ P+YK R P L+ QI + +M++ +G+ + +G EADD+I + K + ++
Sbjct: 67 EIDPNYKQNRTPPPPELLEQIPICIEMIEKMGFISVSQEGYEADDIIASFVKTCEDR-DI 125
Query: 899 KVIISTNDKDMAQLVSN-KIAL---INNNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSD 954
V I T DKD+ QL+ + K ++ I+ N +D + ++GV P +I D+ +L GD SD
Sbjct: 126 FVRIITQDKDLYQLIKDGKTSIYSPISKND-YDEAACLEKYGVKPNQIRDFLALCGDSSD 184
Query: 955 NLPGVKKIGPKTAVKLLNQYNSLE 978
N+PGVK IG K A LL+++ S+E
Sbjct: 185 NIPGVKGIGAKGAKTLLDEFGSIE 208
Score = 39 (18.8 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 18/55 (32%), Positives = 25/55 (45%)
Query: 1033 KDEKLLMQLFNKYNIPLKNHDDNISDENYDIDCSDAKSLFNLTNHFLIAMPGFST 1087
+DEKLL N +I + + NY+ S AKS+ N LI G+ T
Sbjct: 678 EDEKLLNAFANDEDIHARTAIMIFGESNYETR-SVAKSI----NFGLIYGMGYKT 727
>UNIPROTKB|Q0C3C2 [details] [associations]
symbol:HNE_1049 "UPF0301 protein HNE_1049" species:228405
"Hyphomonas neptunium ATCC 15444" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] EMBL:CP000158
GenomeReviews:CP000158_GR eggNOG:COG1678 KO:K07735 HAMAP:MF_00758
InterPro:IPR003774 Pfam:PF02622 HOGENOM:HOG000281193 OMA:VETGRGF
RefSeq:YP_759771.1 ProteinModelPortal:Q0C3C2 STRING:Q0C3C2
GeneID:4288325 KEGG:hne:HNE_1049 PATRIC:32214905
BioCyc:HNEP228405:GI69-1087-MONOMER Uniprot:Q0C3C2
Length = 188
Score = 270 (100.1 bits), Expect = 5.2e-22, P = 5.2e-22
Identities = 63/184 (34%), Positives = 102/184 (55%)
Query: 1073 NLTNHFLIAMPGFSTPFFDGAVVYLCEHNSNGAFGIIINKPTDMTXXXXXXXXXXXXXXX 1132
+LT LIAMPG P F+ +V+ +C H + A GII+NKP D
Sbjct: 6 DLTGKLLIAMPGIGDPRFERSVILVCAHTPDFAMGIILNKPMD-----GIDLQEIIDQMD 60
Query: 1133 VPNTKEFILEKTTKTIMFGGPIQIDRGFVLHNITNEKSPIFNSTLNIASDISLTTSRDIL 1192
+P + LE I+ GGP+ +RGFVLH T++ +T+ + ++ +T +R+IL
Sbjct: 61 IPQDVD--LEGVA--ILEGGPVATERGFVLH--TDDVI-CDGATMEVEDELCMTATREIL 113
Query: 1193 ESFSRGDGPSQLLISLGCSGWGAGQLEEEIMNNHWLIVDANSEVIFNVPCEQRFFAAVKL 1252
S + P + +++LG +GWGAGQLE+E+ N WLI +S+++F E ++ A+
Sbjct: 114 ASIASAAPPRKFVMALGYAGWGAGQLEQELAQNAWLIGAPDSDLVFGDAYEHKWRHAMTR 173
Query: 1253 LGVN 1256
+GV+
Sbjct: 174 MGVD 177
>UNIPROTKB|Q9KTK4 [details] [associations]
symbol:xni "Protein Xni" species:243277 "Vibrio cholerae O1
biovar El Tor str. N16961" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0006308 "DNA catabolic process" evidence=ISS]
InterPro:IPR008918 InterPro:IPR020045 InterPro:IPR020046
Pfam:PF01367 Pfam:PF02739 SMART:SM00279 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0006308 GO:GO:0008409
eggNOG:COG0258 SUPFAM:SSF47807 KO:K01146 ProtClustDB:PRK09482
HAMAP:MF_01192 InterPro:IPR022895 PIR:A82268 RefSeq:NP_230545.1
ProteinModelPortal:Q9KTK4 DNASU:2614127 GeneID:2614127
KEGG:vch:VC0898 PATRIC:20080894 OMA:THAIAVF Uniprot:Q9KTK4
Length = 259
Score = 256 (95.2 bits), Expect = 1.6e-20, P = 1.6e-20
Identities = 69/204 (33%), Positives = 106/204 (51%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFD--AKGKNF 836
ID + I R A PD +I T + L+++ + +++ +FD + +
Sbjct: 8 IDALNLIRRVHSAQPDPNDITR----TAETTTRTLQRIINEAQPSHMIAVFDHHLSDRGW 63
Query: 837 RNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKH 896
R L P+YKA RK MP L I+ I +G L+ +G EADD++ TLA + V H
Sbjct: 64 RAELLPTYKANRKPMPDVLQQGIDAIQDAWWQLGIDSLLSEGDEADDLVATLACK-VAAH 122
Query: 897 NLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSD 954
KV I + DK QL+S + + + + D I FGV+P ++ DY+ L G S
Sbjct: 123 QEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVTPAQLTDYWGLTGVSSS 182
Query: 955 NLPGVKKIGPKTAVKLLNQYNSLE 978
+PGV IGPK A ++LNQ++S+E
Sbjct: 183 QIPGVAGIGPKAAKEILNQFSSIE 206
>TIGR_CMR|VC_0898 [details] [associations]
symbol:VC_0898 "exodeoxyribonuclease IX" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0006308 "DNA catabolic process" evidence=ISS]
InterPro:IPR008918 InterPro:IPR020045 InterPro:IPR020046
Pfam:PF01367 Pfam:PF02739 SMART:SM00279 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0006308 GO:GO:0008409
eggNOG:COG0258 SUPFAM:SSF47807 KO:K01146 ProtClustDB:PRK09482
HAMAP:MF_01192 InterPro:IPR022895 PIR:A82268 RefSeq:NP_230545.1
ProteinModelPortal:Q9KTK4 DNASU:2614127 GeneID:2614127
KEGG:vch:VC0898 PATRIC:20080894 OMA:THAIAVF Uniprot:Q9KTK4
Length = 259
Score = 256 (95.2 bits), Expect = 1.6e-20, P = 1.6e-20
Identities = 69/204 (33%), Positives = 106/204 (51%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFD--AKGKNF 836
ID + I R A PD +I T + L+++ + +++ +FD + +
Sbjct: 8 IDALNLIRRVHSAQPDPNDITR----TAETTTRTLQRIINEAQPSHMIAVFDHHLSDRGW 63
Query: 837 RNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKH 896
R L P+YKA RK MP L I+ I +G L+ +G EADD++ TLA + V H
Sbjct: 64 RAELLPTYKANRKPMPDVLQQGIDAIQDAWWQLGIDSLLSEGDEADDLVATLACK-VAAH 122
Query: 897 NLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSD 954
KV I + DK QL+S + + + + D I FGV+P ++ DY+ L G S
Sbjct: 123 QEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVTPAQLTDYWGLTGVSSS 182
Query: 955 NLPGVKKIGPKTAVKLLNQYNSLE 978
+PGV IGPK A ++LNQ++S+E
Sbjct: 183 QIPGVAGIGPKAAKEILNQFSSIE 206
>TAIR|locus:2083775 [details] [associations]
symbol:AT3G52050 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA]
InterPro:IPR002421 InterPro:IPR008918 InterPro:IPR020045
InterPro:IPR020046 Pfam:PF01367 Pfam:PF02739 SMART:SM00279
SMART:SM00475 EMBL:CP002686 GO:GO:0003677 GO:GO:0008152
EMBL:AL049711 GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807
IPI:IPI00846770 RefSeq:NP_001078270.1 UniGene:At.50269
ProteinModelPortal:A8MQG8 SMR:A8MQG8 STRING:A8MQG8 PaxDb:A8MQG8
PRIDE:A8MQG8 EnsemblPlants:AT3G52050.3 GeneID:824368
KEGG:ath:AT3G52050 TAIR:At3g52050 HOGENOM:HOG000015113 OMA:HDGVPYG
PhylomeDB:A8MQG8 ProtClustDB:CLSN2680900 Genevestigator:A8MQG8
Uniprot:A8MQG8
Length = 448
Score = 248 (92.4 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 56/155 (36%), Positives = 92/155 (59%)
Query: 831 AKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAK 890
AKG NFR+ LYP+YK+ R P ++ + + +KA+ ++ + GVEADDVIGTLA
Sbjct: 199 AKGMNFRHTLYPAYKSNRPPTPDTIVQGLQYLKASIKAMSIKVIEVPGVEADDVIGTLAM 258
Query: 891 QAVTKHNLKVIISTNDKDMAQLVSNKIALIN----NNKIHD--RTTIISRFG-VSPEKIV 943
++++ KV + + DKD Q++S + L+ +++ +FG + P + V
Sbjct: 259 RSISA-GFKVRVVSPDKDFFQILSPSLRLLRLTPRGSEMASFGMEDFAKKFGNLEPAQFV 317
Query: 944 DYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLE 978
D +L GD SDN+PGV IG AV+L++++ +LE
Sbjct: 318 DIIALAGDKSDNIPGVDGIGNVHAVELISRFGTLE 352
Score = 56 (24.8 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 779 IDGSSCIYRAFYAL------PDIRNIDNFP--VGALYGTIKMLRKLYKNYRATYIACIFD 830
IDG+S IYRA+Y L + + D V ++ ++ +L + K + +++A +FD
Sbjct: 122 IDGTSIIYRAYYKLLARLNHGHLAHADGNADWVLTIFSSLSLLIDVLK-FLPSHVAVVFD 180
Query: 831 AKG 833
G
Sbjct: 181 HDG 183
>UNIPROTKB|Q47YA8 [details] [associations]
symbol:xni "Protein Xni" species:167879 "Colwellia
psychrerythraea 34H" [GO:0016895 "exodeoxyribonuclease activity,
producing 5'-phosphomonoesters" evidence=ISS] InterPro:IPR008918
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF01367 Pfam:PF02739
SMART:SM00279 GO:GO:0003677 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 RefSeq:YP_270212.1
ProteinModelPortal:Q47YA8 STRING:Q47YA8 GeneID:3522688
KEGG:cps:CPS_3538 PATRIC:21470009 HOGENOM:HOG000040580 KO:K01146
OMA:AVQGTPC ProtClustDB:PRK09482
BioCyc:CPSY167879:GI48-3566-MONOMER GO:GO:0016895 HAMAP:MF_01192
InterPro:IPR022895 Uniprot:Q47YA8
Length = 290
Score = 227 (85.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 60/172 (34%), Positives = 92/172 (53%)
Query: 810 IKMLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAI 869
+ L K+ ++ T+ +FD++ +R L+ YK RKKMP +L ++ I
Sbjct: 53 VNALIKIIDQHQPTHALTVFDSQEPCWRYQLFEGYKKGRKKMPDHLANKLIDIQDAFMEQ 112
Query: 870 GWPILIIKGVEADDVIGTLA-KQAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIH 926
G L EADD+I TLA K A+ H KV I + DK L+S I + + N +
Sbjct: 113 GVDSLTSDEDEADDLIATLAVKMAL--HGQKVTIISTDKGFLPLLSPNIHIYDYFNRRYL 170
Query: 927 DRTTIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLE 978
D + S+F V +++D+++L GD ++ + GV IG TA KLLNQY SL+
Sbjct: 171 DEEHVQSKFSVKTSQLIDFWTLTGDNTNKIEGVSGIGQVTAAKLLNQYGSLK 222
>TIGR_CMR|CPS_3538 [details] [associations]
symbol:CPS_3538 "exodeoxyribonuclease IX" species:167879
"Colwellia psychrerythraea 34H" [GO:0006308 "DNA catabolic process"
evidence=ISS] [GO:0016895 "exodeoxyribonuclease activity, producing
5'-phosphomonoesters" evidence=ISS] InterPro:IPR008918
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF01367 Pfam:PF02739
SMART:SM00279 GO:GO:0003677 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 RefSeq:YP_270212.1
ProteinModelPortal:Q47YA8 STRING:Q47YA8 GeneID:3522688
KEGG:cps:CPS_3538 PATRIC:21470009 HOGENOM:HOG000040580 KO:K01146
OMA:AVQGTPC ProtClustDB:PRK09482
BioCyc:CPSY167879:GI48-3566-MONOMER GO:GO:0016895 HAMAP:MF_01192
InterPro:IPR022895 Uniprot:Q47YA8
Length = 290
Score = 227 (85.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 60/172 (34%), Positives = 92/172 (53%)
Query: 810 IKMLRKLYKNYRATYIACIFDAKGKNFRNILYPSYKATRKKMPYNLILQINLIHQMVKAI 869
+ L K+ ++ T+ +FD++ +R L+ YK RKKMP +L ++ I
Sbjct: 53 VNALIKIIDQHQPTHALTVFDSQEPCWRYQLFEGYKKGRKKMPDHLANKLIDIQDAFMEQ 112
Query: 870 GWPILIIKGVEADDVIGTLA-KQAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIH 926
G L EADD+I TLA K A+ H KV I + DK L+S I + + N +
Sbjct: 113 GVDSLTSDEDEADDLIATLAVKMAL--HGQKVTIISTDKGFLPLLSPNIHIYDYFNRRYL 170
Query: 927 DRTTIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLE 978
D + S+F V +++D+++L GD ++ + GV IG TA KLLNQY SL+
Sbjct: 171 DEEHVQSKFSVKTSQLIDFWTLTGDNTNKIEGVSGIGQVTAAKLLNQYGSLK 222
>UNIPROTKB|Q9KUZ2 [details] [associations]
symbol:rpsF "30S ribosomal protein S6" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] HAMAP:MF_00360 InterPro:IPR000529
InterPro:IPR020814 InterPro:IPR020815 Pfam:PF01250 PROSITE:PS01048
GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 Gene3D:3.30.70.60 InterPro:IPR014717
SUPFAM:SSF54995 eggNOG:COG0360 KO:K02990 ProtClustDB:PRK00453
TIGRFAMs:TIGR00166 OMA:ITEASPM PIR:H82332 RefSeq:NP_230020.1
ProteinModelPortal:Q9KUZ2 SMR:Q9KUZ2 PRIDE:Q9KUZ2 DNASU:2615045
GeneID:2615045 KEGG:vch:VC0366 PATRIC:20079803 Uniprot:Q9KUZ2
Length = 122
Score = 225 (84.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 45/97 (46%), Positives = 62/97 (63%)
Query: 1 MIERYXXXXXXXXXXXHRLEDWGRRSLAYQIKKVIKAHYICFNIEINKKTLLEIETSFRF 60
MIERY HRLEDWGRR LAY I K+ KAHY+ N+E ++ + E+ET+FRF
Sbjct: 21 MIERYTGSITEAGGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEADQAVVDELETAFRF 80
Query: 61 NDAILRYLTIKTKKVETEESSFLRFIQKKEKVLKMIF 97
NDA+LR + ++TK TE S L+ +++ K +M F
Sbjct: 81 NDAVLRNMIMRTKAAITEPSIMLKAREERVKRDEMKF 117
>TIGR_CMR|VC_0366 [details] [associations]
symbol:VC_0366 "ribosomal protein S6" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_00360 InterPro:IPR000529 InterPro:IPR020814
InterPro:IPR020815 Pfam:PF01250 PROSITE:PS01048 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 Gene3D:3.30.70.60 InterPro:IPR014717 SUPFAM:SSF54995
eggNOG:COG0360 KO:K02990 ProtClustDB:PRK00453 TIGRFAMs:TIGR00166
OMA:ITEASPM PIR:H82332 RefSeq:NP_230020.1 ProteinModelPortal:Q9KUZ2
SMR:Q9KUZ2 PRIDE:Q9KUZ2 DNASU:2615045 GeneID:2615045
KEGG:vch:VC0366 PATRIC:20079803 Uniprot:Q9KUZ2
Length = 122
Score = 225 (84.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 45/97 (46%), Positives = 62/97 (63%)
Query: 1 MIERYXXXXXXXXXXXHRLEDWGRRSLAYQIKKVIKAHYICFNIEINKKTLLEIETSFRF 60
MIERY HRLEDWGRR LAY I K+ KAHY+ N+E ++ + E+ET+FRF
Sbjct: 21 MIERYTGSITEAGGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEADQAVVDELETAFRF 80
Query: 61 NDAILRYLTIKTKKVETEESSFLRFIQKKEKVLKMIF 97
NDA+LR + ++TK TE S L+ +++ K +M F
Sbjct: 81 NDAVLRNMIMRTKAAITEPSIMLKAREERVKRDEMKF 117
>GENEDB_PFALCIPARUM|PFB0180w [details] [associations]
symbol:PFB0180w "5'-3' exonuclease, N-terminal
resolvase-like domain, putative" species:5833 "Plasmodium
falciparum" [GO:0020011 "apicoplast" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR002421
InterPro:IPR008918 InterPro:IPR020045 InterPro:IPR020046
Pfam:PF01367 Pfam:PF02739 SMART:SM00279 SMART:SM00475 GO:GO:0003677
GO:GO:0008152 EMBL:AE001362 GO:GO:0008409 SUPFAM:SSF47807
GO:GO:0020011 PIR:C71621 RefSeq:XP_001349551.1
ProteinModelPortal:O96139 EnsemblProtists:PFB0180w:mRNA
GeneID:812633 KEGG:pfa:PFB0180w EuPathDB:PlasmoDB:PF3D7_0203900
Uniprot:O96139
Length = 577
Score = 194 (73.4 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
Identities = 53/213 (24%), Positives = 102/213 (47%)
Query: 681 LKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKRWKKYRISRFYN 740
+K ++ S + KK +N + ++ + +F + + S K + R K R+
Sbjct: 12 VKYFLIYSKAYKKKNNNDVINNIQRAKNDLFFIKPSVKLNLCSSKFIHRIKSVN-KRYVE 70
Query: 741 KKNNLYNINMFYLEIESLLKKANEHDTKILNALL----MYGKIDGSSCIYRAFYALPDIR 796
K + I+ E + K ++ + K N + + +DGSS +++ F+ +P ++
Sbjct: 71 KNEYIQQIDNDIEEKKKKKKTTSKRNNKSSNQINDDYETFLIVDGSSILFKNFFGMPFLK 130
Query: 797 NIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK-GKNFRNILYPSYKATRKKMPYNL 855
N ++ + +YG I+ L K+Y + TYIA IFD+K N + +Y +YK R+K P L
Sbjct: 131 NDNDVNLSTIYGFIQSLNKIYNLFLPTYIAIIFDSKTSNNDKKKIYANYKIFRRKNPDEL 190
Query: 856 ILQINLIHQMVKAIGWPILIIKGVEADDVIGTL 888
Q+ ++ IG + +E+DD I +
Sbjct: 191 YEQLKIVSNFCDTIGIKTISSTNIESDDYIARI 223
Score = 106 (42.4 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
Identities = 29/94 (30%), Positives = 50/94 (53%)
Query: 895 KHNLKVIISTNDKDMAQLV--SNK-----IALINNNKIH---DRTTIISRFGVSPEKIVD 944
K +VI+ ++DKD+ QL+ +N+ I++ NK + + + P + D
Sbjct: 404 KKKFRVIVVSSDKDLLQLLEYNNETYNMDISICQPNKKYRLVNSHLFYEEHEILPSQYSD 463
Query: 945 YFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLE 978
Y L GD +D + GV IG KT+ LL +Y+++E
Sbjct: 464 YLILTGDKTDGISGVPYIGDKTSKCLLKEYHNIE 497
>UNIPROTKB|O96139 [details] [associations]
symbol:PFB0180w "5'-3' exonuclease, N-terminal
resolvase-like domain, putative" species:36329 "Plasmodium
falciparum 3D7" [GO:0008150 "biological_process" evidence=ND]
[GO:0020011 "apicoplast" evidence=ISS] InterPro:IPR002421
InterPro:IPR008918 InterPro:IPR020045 InterPro:IPR020046
Pfam:PF01367 Pfam:PF02739 SMART:SM00279 SMART:SM00475 GO:GO:0003677
GO:GO:0008152 EMBL:AE001362 GO:GO:0008409 SUPFAM:SSF47807
GO:GO:0020011 PIR:C71621 RefSeq:XP_001349551.1
ProteinModelPortal:O96139 EnsemblProtists:PFB0180w:mRNA
GeneID:812633 KEGG:pfa:PFB0180w EuPathDB:PlasmoDB:PF3D7_0203900
Uniprot:O96139
Length = 577
Score = 194 (73.4 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
Identities = 53/213 (24%), Positives = 102/213 (47%)
Query: 681 LKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKRWKKYRISRFYN 740
+K ++ S + KK +N + ++ + +F + + S K + R K R+
Sbjct: 12 VKYFLIYSKAYKKKNNNDVINNIQRAKNDLFFIKPSVKLNLCSSKFIHRIKSVN-KRYVE 70
Query: 741 KKNNLYNINMFYLEIESLLKKANEHDTKILNALL----MYGKIDGSSCIYRAFYALPDIR 796
K + I+ E + K ++ + K N + + +DGSS +++ F+ +P ++
Sbjct: 71 KNEYIQQIDNDIEEKKKKKKTTSKRNNKSSNQINDDYETFLIVDGSSILFKNFFGMPFLK 130
Query: 797 NIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAK-GKNFRNILYPSYKATRKKMPYNL 855
N ++ + +YG I+ L K+Y + TYIA IFD+K N + +Y +YK R+K P L
Sbjct: 131 NDNDVNLSTIYGFIQSLNKIYNLFLPTYIAIIFDSKTSNNDKKKIYANYKIFRRKNPDEL 190
Query: 856 ILQINLIHQMVKAIGWPILIIKGVEADDVIGTL 888
Q+ ++ IG + +E+DD I +
Sbjct: 191 YEQLKIVSNFCDTIGIKTISSTNIESDDYIARI 223
Score = 106 (42.4 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
Identities = 29/94 (30%), Positives = 50/94 (53%)
Query: 895 KHNLKVIISTNDKDMAQLV--SNK-----IALINNNKIH---DRTTIISRFGVSPEKIVD 944
K +VI+ ++DKD+ QL+ +N+ I++ NK + + + P + D
Sbjct: 404 KKKFRVIVVSSDKDLLQLLEYNNETYNMDISICQPNKKYRLVNSHLFYEEHEILPSQYSD 463
Query: 945 YFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLE 978
Y L GD +D + GV IG KT+ LL +Y+++E
Sbjct: 464 YLILTGDKTDGISGVPYIGDKTSKCLLKEYHNIE 497
>TIGR_CMR|SO_1549 [details] [associations]
symbol:SO_1549 "exodeoxyribonuclease IX" species:211586
"Shewanella oneidensis MR-1" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0006308 "DNA catabolic process" evidence=ISS] [GO:0016895
"exodeoxyribonuclease activity, producing 5'-phosphomonoesters"
evidence=ISS] InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF01367 Pfam:PF02739
SMART:SM00278 SMART:SM00279 GO:GO:0003677 GO:GO:0006281
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0008409
eggNOG:COG0258 SUPFAM:SSF47807 HOGENOM:HOG000040580 KO:K01146
ProtClustDB:PRK09482 HAMAP:MF_01192 InterPro:IPR022895
RefSeq:NP_717163.2 HSSP:P19821 ProteinModelPortal:Q8EGP9
GeneID:1169355 KEGG:son:SO_1549 PATRIC:23522738 OMA:YELFRAH
Uniprot:Q8EGP9
Length = 261
Score = 222 (83.2 bits), Expect = 6.8e-17, P = 6.8e-17
Identities = 59/201 (29%), Positives = 102/201 (50%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
IDG + + R + A+PD ++++ K+LR + T++A ++D ++R
Sbjct: 7 IDGLNLVRRIYAAIPDENDMESLTERVSVACTKLLRI----HHPTHVAVVWDGDEISWRK 62
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
LYP YK RK MP L + + + ++ + I EADDVI TLA +
Sbjct: 63 QLYPDYKKGRKPMPEPLAAGLIALQEHLQNLQIQS-IYAAAEADDVIATLATKTAKAQGE 121
Query: 899 KVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNL 956
+I+ST DK +QL +I+ + N + + + + GV + +D +L GD + +
Sbjct: 122 ALIVST-DKGFSQLNHPRISQWDHFNQQYLNIAELEQKLGVDRSQFLDLMALAGDSGNKI 180
Query: 957 PGVKKIGPKTAVKLLNQYNSL 977
PG+ IGPK+A +LL + +L
Sbjct: 181 PGIPGIGPKSAAELLRTFRTL 201
>UNIPROTKB|P02358 [details] [associations]
symbol:rpsF species:83333 "Escherichia coli K-12"
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA]
[GO:0006412 "translation" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
HAMAP:MF_00360 InterPro:IPR000529 InterPro:IPR020814
InterPro:IPR020815 Pfam:PF01250 PROSITE:PS01048 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006412 GO:GO:0003735 EMBL:U14003 GO:GO:0019843 PDB:3J00
PDBsum:3J00 Gene3D:3.30.70.60 InterPro:IPR014717 PDB:3FIH PDB:3IZV
PDB:3IZW PDBsum:3FIH PDBsum:3IZV PDBsum:3IZW GO:GO:0022627
EMBL:X04022 PDB:3SFS PDB:3UOQ PDBsum:3SFS PDBsum:3UOQ PDB:1EG0
PDBsum:1EG0 SUPFAM:SSF54995 PDB:4GAS PDB:4GD1 PDBsum:4GAS
PDBsum:4GD1 PDB:1M5G PDB:1P6G PDB:1P87 PDB:1VS5 PDB:1VS7 PDB:2AVY
PDB:2AW7 PDB:2GY9 PDB:2GYB PDB:2I2P PDB:2I2U PDB:2QAL PDB:2QAN
PDB:2QB9 PDB:2QBB PDB:2QBD PDB:2QBF PDB:2QBH PDB:2QBJ PDB:2QOU
PDB:2QOW PDB:2QOY PDB:2QP0 PDB:2VHO PDB:2VHP PDB:2WWL PDB:2YKR
PDB:2Z4K PDB:2Z4M PDB:3DF1 PDB:3DF3 PDB:3E1A PDB:3E1C PDB:3I1M
PDB:3I1O PDB:3I1Q PDB:3I1S PDB:3I1Z PDB:3I21 PDB:3J0U PDB:3J0V
PDB:3J0X PDB:3J0Z PDB:3J10 PDB:3J13 PDB:3J18 PDB:3KC4 PDB:3OAQ
PDB:3OAR PDB:3OFA PDB:3OFB PDB:3OFO PDB:3OFP PDB:3OFX PDB:3OFY
PDB:3OR9 PDB:3ORA PDB:4A2I PDB:4ADV PDB:4GAQ PDB:4GD2 PDBsum:1M5G
PDBsum:1P6G PDBsum:1P87 PDBsum:1VS5 PDBsum:1VS7 PDBsum:2AVY
PDBsum:2AW7 PDBsum:2GY9 PDBsum:2GYB PDBsum:2I2P PDBsum:2I2U
PDBsum:2QAL PDBsum:2QAN PDBsum:2QB9 PDBsum:2QBB PDBsum:2QBD
PDBsum:2QBF PDBsum:2QBH PDBsum:2QBJ PDBsum:2QOU PDBsum:2QOW
PDBsum:2QOY PDBsum:2QP0 PDBsum:2VHO PDBsum:2VHP PDBsum:2WWL
PDBsum:2YKR PDBsum:2Z4K PDBsum:2Z4M PDBsum:3DF1 PDBsum:3DF3
PDBsum:3E1A PDBsum:3E1C PDBsum:3I1M PDBsum:3I1O PDBsum:3I1Q
PDBsum:3I1S PDBsum:3I1Z PDBsum:3I21 PDBsum:3J0U PDBsum:3J0V
PDBsum:3J0X PDBsum:3J0Z PDBsum:3J10 PDBsum:3J13 PDBsum:3J18
PDBsum:3KC4 PDBsum:3OAQ PDBsum:3OAR PDBsum:3OFA PDBsum:3OFB
PDBsum:3OFO PDBsum:3OFP PDBsum:3OFX PDBsum:3OFY PDBsum:3OR9
PDBsum:3ORA PDBsum:4A2I PDBsum:4ADV PDBsum:4GAQ PDBsum:4GD2
eggNOG:COG0360 KO:K02990 ProtClustDB:PRK00453 TIGRFAMs:TIGR00166
HOGENOM:HOG000040438 OMA:ITEASPM PIR:C65231 RefSeq:NP_418621.5
RefSeq:YP_492342.1 ProteinModelPortal:P02358 SMR:P02358
DIP:DIP-10782N IntAct:P02358 MINT:MINT-1279331 SWISS-2DPAGE:P02358
PaxDb:P02358 PRIDE:P02358 EnsemblBacteria:EBESCT00000004456
EnsemblBacteria:EBESCT00000017509 GeneID:12930647 GeneID:948723
KEGG:ecj:Y75_p4086 KEGG:eco:b4200 PATRIC:48667972 EchoBASE:EB0898
EcoGene:EG10905 BioCyc:EcoCyc:EG10905-MONOMER
BioCyc:ECOL316407:JW4158-MONOMER EvolutionaryTrace:P02358
Genevestigator:P02358 Uniprot:P02358
Length = 135
Score = 219 (82.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 40/84 (47%), Positives = 55/84 (65%)
Query: 1 MIERYXXXXXXXXXXXHRLEDWGRRSLAYQIKKVIKAHYICFNIEINKKTLLEIETSFRF 60
MIERY HRLEDWGRR LAY I K+ KAHY+ N+E ++ + E+ET+FRF
Sbjct: 21 MIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRF 80
Query: 61 NDAILRYLTIKTKKVETEESSFLR 84
NDA++R + ++TK TE S ++
Sbjct: 81 NDAVIRSMVMRTKHAVTEASPMVK 104
>UNIPROTKB|Q60BQ2 [details] [associations]
symbol:MCA0413 "UPF0301 protein MCA0413 1" species:243233
"Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
EMBL:AE017282 GenomeReviews:AE017282_GR eggNOG:COG1678
HAMAP:MF_00758 InterPro:IPR003774 Pfam:PF02622 HOGENOM:HOG000281193
RefSeq:YP_112944.1 HSSP:Q6FF54 ProteinModelPortal:Q60BQ2
GeneID:3103494 KEGG:mca:MCA0413 PATRIC:22604575 OMA:GDKIFHN
Uniprot:Q60BQ2
Length = 182
Score = 216 (81.1 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 55/184 (29%), Positives = 91/184 (49%)
Query: 1075 TNHFLIAMPGFSTPFFDGAVVYLCEHNSNGAFGIIINKPTDMTXXXXXXXXXXXXXXXVP 1134
+ FL+A P F +V+Y+ HN++GA G+I+N+
Sbjct: 14 SGQFLVAHPKMPANIFAHSVIYVVSHNADGAMGLIVNRLAGAGPLGKLLEAFGLASKAQR 73
Query: 1135 NTKEFILEKTTKTIMFGGPIQIDRGFVLHNITNEKSPIFNSTLNIASDISLTTSRDILES 1194
K ++ GGP+ I +GFVLH+ + ST + +SL+T D+LE+
Sbjct: 74 EIKLYL----------GGPVGIGQGFVLHSDDYAGA----STRALKKGLSLSTGLDVLEA 119
Query: 1195 FSRGDGPSQLLISLGCSGWGAGQLEEEIMNNHWLIVDANSEVIFNVPCEQRFFAAVKLLG 1254
+RG GP Q+ + G +GW GQL+ EI WL+ A++ +IF+ ++ + A+K G
Sbjct: 120 IARGRGPRQVRMLFGYAGWSPGQLDGEIARGDWLLAPADTSLIFSEEPDKVWEEALKHAG 179
Query: 1255 VNPL 1258
+ PL
Sbjct: 180 L-PL 182
>TIGR_CMR|SO_3930 [details] [associations]
symbol:SO_3930 "ribosomal protein S6" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_00360 InterPro:IPR000529 InterPro:IPR020814 Pfam:PF01250
PROSITE:PS01048 GO:GO:0006412 GO:GO:0005840 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0003735 GO:GO:0019843
Gene3D:3.30.70.60 InterPro:IPR014717 SUPFAM:SSF54995 eggNOG:COG0360
KO:K02990 ProtClustDB:PRK00453 TIGRFAMs:TIGR00166
HOGENOM:HOG000040438 OMA:ITEASPM RefSeq:NP_719461.1
ProteinModelPortal:Q8EAH2 SMR:Q8EAH2 PRIDE:Q8EAH2 GeneID:1171569
KEGG:son:SO_3930 PATRIC:23527540 Uniprot:Q8EAH2
Length = 131
Score = 215 (80.7 bits), Expect = 3.8e-16, P = 3.8e-16
Identities = 41/80 (51%), Positives = 53/80 (66%)
Query: 1 MIERYXXXXXXXXXXXHRLEDWGRRSLAYQIKKVIKAHYICFNIEINKKTLLEIETSFRF 60
MIERY HRLEDWGRR LAY I+ + KAHY+ N+E +T+ E+ET+FRF
Sbjct: 21 MIERYTGAITEANGKIHRLEDWGRRQLAYPIQDLHKAHYVLMNVEAPAETIEELETAFRF 80
Query: 61 NDAILRYLTIKTKKVETEES 80
NDA+LR + ++TK TE S
Sbjct: 81 NDAVLRNMVMRTKGAITEAS 100
>UNIPROTKB|P38506 [details] [associations]
symbol:ygdG "YgdG" species:83333 "Escherichia coli K-12"
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR002421
InterPro:IPR008918 InterPro:IPR020045 InterPro:IPR020046
Pfam:PF01367 Pfam:PF02739 SMART:SM00279 SMART:SM00475 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0046872 GO:GO:0003677 EMBL:U29581 GO:GO:0008152 GO:GO:0008409
eggNOG:COG0258 SUPFAM:SSF47807 EMBL:M27177 EMBL:L07763
HOGENOM:HOG000040580 KO:K01146 ProtClustDB:PRK09482 HAMAP:MF_01192
InterPro:IPR022895 PIR:B65062 RefSeq:NP_417278.4 RefSeq:YP_491006.1
ProteinModelPortal:P38506 SMR:P38506 DIP:DIP-11145N IntAct:P38506
EnsemblBacteria:EBESCT00000004871 EnsemblBacteria:EBESCT00000018316
GeneID:12930228 GeneID:947256 KEGG:ecj:Y75_p2735 KEGG:eco:b2798
PATRIC:32121012 EchoBASE:EB2275 EcoGene:EG12372
BioCyc:EcoCyc:EG12372-MONOMER BioCyc:ECOL316407:JW5446-MONOMER
Genevestigator:P38506 Uniprot:P38506
Length = 251
Score = 209 (78.6 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 56/170 (32%), Positives = 88/170 (51%)
Query: 813 LRKLYKNYRATYIACIFDAKGKN--FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIG 870
L +L + + T+ +FD + ++ +R+ P YKA R MP L ++ + + G
Sbjct: 33 LDQLIMHSQPTHAVAVFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRG 92
Query: 871 WPILIIKGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDR 928
P G EADD+ TLA + + I+ST DK QL+S + + + + D
Sbjct: 93 VPCWSTSGNEADDLAATLAVKVTQAGHQATIVST-DKGYCQLLSPTLRIRDYFQKRWLDA 151
Query: 929 TTIISRFGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLE 978
I FGV P+++ DY+ L G S +PGV IGPK+A +LL ++ SLE
Sbjct: 152 PFIDKEFGVQPQQLPDYWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLE 201
>UNIPROTKB|Q9KUY9 [details] [associations]
symbol:rplI "50S ribosomal protein L9" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] HAMAP:MF_00503 InterPro:IPR000244
InterPro:IPR020594 Pfam:PF01281 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
eggNOG:COG0359 KO:K02939 Gene3D:3.10.430.100 Gene3D:3.40.5.10
InterPro:IPR009027 InterPro:IPR020069 InterPro:IPR020070
PANTHER:PTHR21368 Pfam:PF03948 SUPFAM:SSF55658 SUPFAM:SSF55653
TIGRFAMs:TIGR00158 PROSITE:PS00651 ProtClustDB:PRK00137 OMA:TGIYEIE
PIR:C82333 RefSeq:NP_230023.1 ProteinModelPortal:Q9KUY9 SMR:Q9KUY9
PRIDE:Q9KUY9 DNASU:2615048 GeneID:2615048 KEGG:vch:VC0369
PATRIC:20079809 Uniprot:Q9KUY9
Length = 149
Score = 209 (78.6 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 48/136 (35%), Positives = 66/136 (48%)
Query: 174 MQVILLKDIPNLGKLGEIIKVKNGYARNFLIPKNKARHATKFVIKEFEEKRIKLE-KTAF 232
MQVILL I NLG LG+ + VK+GYARNFLIP+ KA ATK + FE +R +LE K A
Sbjct: 1 MQVILLDKIGNLGSLGDTVNVKSGYARNFLIPQGKAVMATKANVAMFESRRAELEAKVAE 60
Query: 233 TIFLNAXXXXXXXXXXXXXXXXXSGVDGKLFGSVTNSDXXXXXXXXXXXXXXXXXXXPNN 292
+ +G +GKLFGS+ D P
Sbjct: 61 QLAAAQTRADQVNALEAVVIASKAGDEGKLFGSIGTRDIADAITAAGVKVSKSEVRLPEG 120
Query: 293 SIKKIGNYYIDILLHN 308
+++ +G Y + + LH+
Sbjct: 121 ALRNVGAYEVSVQLHS 136
>TIGR_CMR|VC_0369 [details] [associations]
symbol:VC_0369 "ribosomal protein L9" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_00503 InterPro:IPR000244 InterPro:IPR020594 Pfam:PF01281
GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0359 KO:K02939
Gene3D:3.10.430.100 Gene3D:3.40.5.10 InterPro:IPR009027
InterPro:IPR020069 InterPro:IPR020070 PANTHER:PTHR21368
Pfam:PF03948 SUPFAM:SSF55658 SUPFAM:SSF55653 TIGRFAMs:TIGR00158
PROSITE:PS00651 ProtClustDB:PRK00137 OMA:TGIYEIE PIR:C82333
RefSeq:NP_230023.1 ProteinModelPortal:Q9KUY9 SMR:Q9KUY9
PRIDE:Q9KUY9 DNASU:2615048 GeneID:2615048 KEGG:vch:VC0369
PATRIC:20079809 Uniprot:Q9KUY9
Length = 149
Score = 209 (78.6 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 48/136 (35%), Positives = 66/136 (48%)
Query: 174 MQVILLKDIPNLGKLGEIIKVKNGYARNFLIPKNKARHATKFVIKEFEEKRIKLE-KTAF 232
MQVILL I NLG LG+ + VK+GYARNFLIP+ KA ATK + FE +R +LE K A
Sbjct: 1 MQVILLDKIGNLGSLGDTVNVKSGYARNFLIPQGKAVMATKANVAMFESRRAELEAKVAE 60
Query: 233 TIFLNAXXXXXXXXXXXXXXXXXSGVDGKLFGSVTNSDXXXXXXXXXXXXXXXXXXXPNN 292
+ +G +GKLFGS+ D P
Sbjct: 61 QLAAAQTRADQVNALEAVVIASKAGDEGKLFGSIGTRDIADAITAAGVKVSKSEVRLPEG 120
Query: 293 SIKKIGNYYIDILLHN 308
+++ +G Y + + LH+
Sbjct: 121 ALRNVGAYEVSVQLHS 136
>TIGR_CMR|CBU_0864 [details] [associations]
symbol:CBU_0864 "ribosomal protein S6" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] HAMAP:MF_00360 InterPro:IPR000529
InterPro:IPR020814 Pfam:PF01250 PROSITE:PS01048 GO:GO:0006412
GO:GO:0005840 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003735
GO:GO:0019843 Gene3D:3.30.70.60 InterPro:IPR014717 SUPFAM:SSF54995
eggNOG:COG0360 KO:K02990 ProtClustDB:PRK00453 TIGRFAMs:TIGR00166
HOGENOM:HOG000040438 OMA:ITEASPM RefSeq:NP_819883.1
ProteinModelPortal:Q83D76 SMR:Q83D76 PRIDE:Q83D76 GeneID:1208757
KEGG:cbu:CBU_0864 PATRIC:17930425
BioCyc:CBUR227377:GJ7S-858-MONOMER Uniprot:Q83D76
Length = 127
Score = 203 (76.5 bits), Expect = 7.1e-15, P = 7.1e-15
Identities = 43/97 (44%), Positives = 58/97 (59%)
Query: 1 MIERYXXXXXXXXXXXHRLEDWGRRSLAYQIKKVIKAHYICFNIEINKKTLLEIETSFRF 60
M+ERY HRLEDWGRR LAY I KV KAHY+ NIE ++ + E+E +FR+
Sbjct: 21 MVERYQSMIKEKDGKVHRLEDWGRRQLAYSIDKVHKAHYLLMNIESDQGVISELENAFRY 80
Query: 61 NDAILRYLTIKTKKVETEESSFLRFIQK-----KEKV 92
NDA++R L +K T+ S ++ +K KEKV
Sbjct: 81 NDAVIRSLILKRDHAITKSSLIMQGAEKGKSSRKEKV 117
>TIGR_CMR|CPS_0415 [details] [associations]
symbol:CPS_0415 "ribosomal protein S6" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS] HAMAP:MF_00360
InterPro:IPR000529 InterPro:IPR020814 InterPro:IPR020815
Pfam:PF01250 PROSITE:PS01048 GO:GO:0006412 GO:GO:0005840
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003735 GO:GO:0019843
Gene3D:3.30.70.60 InterPro:IPR014717 SUPFAM:SSF54995 eggNOG:COG0360
KO:K02990 ProtClustDB:PRK00453 TIGRFAMs:TIGR00166
RefSeq:YP_267173.1 ProteinModelPortal:Q489U1 SMR:Q489U1
STRING:Q489U1 PRIDE:Q489U1 GeneID:3522469 KEGG:cps:CPS_0415
PATRIC:21464191 HOGENOM:HOG000040438 OMA:ITEASPM
BioCyc:CPSY167879:GI48-510-MONOMER Uniprot:Q489U1
Length = 143
Score = 202 (76.2 bits), Expect = 9.1e-15, P = 9.1e-15
Identities = 38/80 (47%), Positives = 51/80 (63%)
Query: 1 MIERYXXXXXXXXXXXHRLEDWGRRSLAYQIKKVIKAHYICFNIEINKKTLLEIETSFRF 60
MI+RY HRLEDWGRR LAY I K+ KAHY+ NIE + + E+ET+FR+
Sbjct: 21 MIQRYTDLINAAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNIEAPQVVIDELETAFRY 80
Query: 61 NDAILRYLTIKTKKVETEES 80
ND ++R + ++TK TE S
Sbjct: 81 NDVVIRNMIMRTKDAVTEAS 100
>UNIPROTKB|Q83A18 [details] [associations]
symbol:CBU_2093 "UPF0301 protein CBU_2093" species:227377
"Coxiella burnetii RSA 493" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] EMBL:AE016828
GenomeReviews:AE016828_GR eggNOG:COG1678 KO:K07735 HAMAP:MF_00758
InterPro:IPR003774 Pfam:PF02622 HOGENOM:HOG000281193
RefSeq:NP_821063.2 ProteinModelPortal:Q83A18 PRIDE:Q83A18
GeneID:1210006 KEGG:cbu:CBU_2093 PATRIC:17932935 OMA:VETGRGF
ProtClustDB:CLSK915240 BioCyc:CBUR227377:GJ7S-2059-MONOMER
Uniprot:Q83A18
Length = 194
Score = 199 (75.1 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 40/109 (36%), Positives = 66/109 (60%)
Query: 1148 IMFGGPIQIDRGFVLHNITNEKSPIFNSTLNIASDISLTTSRDILESFSRGDGPSQLLIS 1207
++ GGPI + GF+++ ++SP ++I L+ S+D+L+ ++ GP LI+
Sbjct: 85 VLMGGPIGQEHGFIVYE---QESPQ-------GAEILLSASKDMLDDIAKNKGPDDFLIT 134
Query: 1208 LGCSGWGAGQLEEEIMNNHWLIVDANSEVIFNVPCEQRFFAAVKLLGVN 1256
LG +GW AGQLE EI N WL+V N +++F P + R+ A L+GV+
Sbjct: 135 LGYAGWEAGQLENEIARNDWLVVPFNRKILFETPLKSRWQKAAALIGVD 183
Score = 123 (48.4 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 31/98 (31%), Positives = 49/98 (50%)
Query: 1074 LTNHFLIAMPGFSTPFFDGAVVYLCEHNSNGAFGIIINKPTDMTXXXXXXXXXXXXXXXV 1133
L+NHFL+AMP + F AV+Y+ +H++ GA GIIIN+P +T
Sbjct: 20 LSNHFLVAMPQLNDFTFTKAVIYVSQHDAKGALGIIINRPLALTLGKVLEHLNIEIAQ-- 77
Query: 1134 PNTKEFILEKTTKTIMFGGPIQIDRGFVLHNITNEKSP 1171
P ++ GGPI + GF+++ ++SP
Sbjct: 78 PQI-------ANHPVLMGGPIGQEHGFIVYE---QESP 105
>TIGR_CMR|CBU_2093 [details] [associations]
symbol:CBU_2093 "conserved hypothetical protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
EMBL:AE016828 GenomeReviews:AE016828_GR eggNOG:COG1678 KO:K07735
HAMAP:MF_00758 InterPro:IPR003774 Pfam:PF02622 HOGENOM:HOG000281193
RefSeq:NP_821063.2 ProteinModelPortal:Q83A18 PRIDE:Q83A18
GeneID:1210006 KEGG:cbu:CBU_2093 PATRIC:17932935 OMA:VETGRGF
ProtClustDB:CLSK915240 BioCyc:CBUR227377:GJ7S-2059-MONOMER
Uniprot:Q83A18
Length = 194
Score = 199 (75.1 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 40/109 (36%), Positives = 66/109 (60%)
Query: 1148 IMFGGPIQIDRGFVLHNITNEKSPIFNSTLNIASDISLTTSRDILESFSRGDGPSQLLIS 1207
++ GGPI + GF+++ ++SP ++I L+ S+D+L+ ++ GP LI+
Sbjct: 85 VLMGGPIGQEHGFIVYE---QESPQ-------GAEILLSASKDMLDDIAKNKGPDDFLIT 134
Query: 1208 LGCSGWGAGQLEEEIMNNHWLIVDANSEVIFNVPCEQRFFAAVKLLGVN 1256
LG +GW AGQLE EI N WL+V N +++F P + R+ A L+GV+
Sbjct: 135 LGYAGWEAGQLENEIARNDWLVVPFNRKILFETPLKSRWQKAAALIGVD 183
Score = 123 (48.4 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 31/98 (31%), Positives = 49/98 (50%)
Query: 1074 LTNHFLIAMPGFSTPFFDGAVVYLCEHNSNGAFGIIINKPTDMTXXXXXXXXXXXXXXXV 1133
L+NHFL+AMP + F AV+Y+ +H++ GA GIIIN+P +T
Sbjct: 20 LSNHFLVAMPQLNDFTFTKAVIYVSQHDAKGALGIIINRPLALTLGKVLEHLNIEIAQ-- 77
Query: 1134 PNTKEFILEKTTKTIMFGGPIQIDRGFVLHNITNEKSP 1171
P ++ GGPI + GF+++ ++SP
Sbjct: 78 PQI-------ANHPVLMGGPIGQEHGFIVYE---QESP 105
>UNIPROTKB|P0A7R1 [details] [associations]
symbol:rplI "50S ribosomal subunit protein L9"
species:83333 "Escherichia coli K-12" [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
HAMAP:MF_00503 InterPro:IPR000244 InterPro:IPR020594 Pfam:PF01281
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:U14003 GO:GO:0019843 PDB:2VHM PDBsum:2VHM PDB:2RDO PDBsum:2RDO
EMBL:X04022 eggNOG:COG0359 HOGENOM:HOG000040337 KO:K02939
Gene3D:3.10.430.100 Gene3D:3.40.5.10 InterPro:IPR009027
InterPro:IPR020069 InterPro:IPR020070 PANTHER:PTHR21368
Pfam:PF03948 SUPFAM:SSF55658 SUPFAM:SSF55653 TIGRFAMs:TIGR00158
PROSITE:PS00651 PDB:3J0T PDB:3J0W PDB:3J0Y PDB:3J11 PDB:3J12
PDB:3J14 PDBsum:3J0T PDBsum:3J0W PDBsum:3J0Y PDBsum:3J11
PDBsum:3J12 PDBsum:3J14 PDB:1P85 PDB:1P86 PDB:1VS6 PDB:1VS8
PDB:1VT2 PDB:2AW4 PDB:2AWB PDB:2GYA PDB:2GYC PDB:2I2T PDB:2I2V
PDB:2J28 PDB:2QAM PDB:2QAO PDB:2QBA PDB:2QBC PDB:2QBE PDB:2QBG
PDB:2QBI PDB:2QBK PDB:2QOV PDB:2QOX PDB:2QOZ PDB:2QP1 PDB:2VHN
PDB:2WWQ PDB:2Z4L PDB:2Z4N PDB:3DF2 PDB:3DF4 PDB:3E1B PDB:3E1D
PDB:3FIK PDB:3I1N PDB:3I1P PDB:3I1R PDB:3I1T PDB:3I20 PDB:3I22
PDB:3IZT PDB:3IZU PDB:3J01 PDB:3J19 PDB:3KCR PDB:3OAS PDB:3OAT
PDB:3OFC PDB:3OFD PDB:3OFQ PDB:3OFR PDB:3OFZ PDB:3OG0 PDB:3ORB
PDB:3R8S PDB:3R8T PDB:487D PDB:4GAR PDB:4GAU PDBsum:1P85
PDBsum:1P86 PDBsum:1VS6 PDBsum:1VS8 PDBsum:1VT2 PDBsum:2AW4
PDBsum:2AWB PDBsum:2GYA PDBsum:2GYC PDBsum:2I2T PDBsum:2I2V
PDBsum:2J28 PDBsum:2QAM PDBsum:2QAO PDBsum:2QBA PDBsum:2QBC
PDBsum:2QBE PDBsum:2QBG PDBsum:2QBI PDBsum:2QBK PDBsum:2QOV
PDBsum:2QOX PDBsum:2QOZ PDBsum:2QP1 PDBsum:2VHN PDBsum:2WWQ
PDBsum:2Z4L PDBsum:2Z4N PDBsum:3DF2 PDBsum:3DF4 PDBsum:3E1B
PDBsum:3E1D PDBsum:3FIK PDBsum:3I1N PDBsum:3I1P PDBsum:3I1R
PDBsum:3I1T PDBsum:3I20 PDBsum:3I22 PDBsum:3IZT PDBsum:3IZU
PDBsum:3J01 PDBsum:3J19 PDBsum:3KCR PDBsum:3OAS PDBsum:3OAT
PDBsum:3OFC PDBsum:3OFD PDBsum:3OFQ PDBsum:3OFR PDBsum:3OFZ
PDBsum:3OG0 PDBsum:3ORB PDBsum:3R8S PDBsum:3R8T PDBsum:487D
PDBsum:4GAR PDBsum:4GAU PDB:3BBX PDBsum:3BBX ProtClustDB:PRK00137
OMA:TGIYEIE PIR:F65231 RefSeq:NP_418624.1 RefSeq:YP_492345.1
ProteinModelPortal:P0A7R1 SMR:P0A7R1 DIP:DIP-35748N IntAct:P0A7R1
MINT:MINT-1228834 SWISS-2DPAGE:P0A7R1 PaxDb:P0A7R1 PRIDE:P0A7R1
EnsemblBacteria:EBESCT00000000262 EnsemblBacteria:EBESCT00000014555
GeneID:12930641 GeneID:948720 KEGG:ecj:Y75_p4089 KEGG:eco:b4203
PATRIC:32123981 EchoBASE:EB0863 EcoGene:EG10870
BioCyc:EcoCyc:EG10870-MONOMER BioCyc:ECOL316407:JW4161-MONOMER
EvolutionaryTrace:P0A7R1 Genevestigator:P0A7R1 Uniprot:P0A7R1
Length = 149
Score = 192 (72.6 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 46/136 (33%), Positives = 64/136 (47%)
Query: 174 MQVILLKDIPNLGKLGEIIKVKNGYARNFLIPKNKARHATKFVIKEFEEKRIKLE-KTAF 232
MQVILL + NLG LG+ + VK GYARNFL+P+ KA ATK I+ FE +R +LE K A
Sbjct: 1 MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEARRAELEAKLAE 60
Query: 233 TIFLNAXXXXXXXXXXXXXXXXXSGVDGKLFGSVTNSDXXXXXXXXXXXXXXXXXXXPNN 292
+ +G +GKLFGS+ D PN
Sbjct: 61 VLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADAVTAAGVEVAKSEVRLPNG 120
Query: 293 SIKKIGNYYIDILLHN 308
++ G + + +H+
Sbjct: 121 VLRTTGEHEVSFQVHS 136
>TIGR_CMR|SO_3927 [details] [associations]
symbol:SO_3927 "ribosomal protein L9" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_00503 InterPro:IPR000244 InterPro:IPR020594 Pfam:PF01281
GO:GO:0006412 GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0359 HOGENOM:HOG000040337
KO:K02939 Gene3D:3.10.430.100 Gene3D:3.40.5.10 InterPro:IPR009027
InterPro:IPR020069 InterPro:IPR020070 PANTHER:PTHR21368
Pfam:PF03948 SUPFAM:SSF55658 SUPFAM:SSF55653 TIGRFAMs:TIGR00158
PROSITE:PS00651 ProtClustDB:PRK00137 OMA:TGIYEIE RefSeq:NP_719458.1
ProteinModelPortal:Q8EAH5 SMR:Q8EAH5 GeneID:1171566
KEGG:son:SO_3927 PATRIC:23527534 Uniprot:Q8EAH5
Length = 150
Score = 187 (70.9 bits), Expect = 3.6e-13, P = 3.6e-13
Identities = 45/135 (33%), Positives = 65/135 (48%)
Query: 174 MQVILLKDIPNLGKLGEIIKVKNGYARNFLIPKNKARHATKFVIKEFEEKRIKLE-KTAF 232
M VILL I NLG LG+ + VK GYARN+L+P+ KA A + +K FE +R +LE K A
Sbjct: 1 MNVILLDKIANLGNLGDQVAVKAGYARNYLLPQGKAVVANESNVKVFEARRAELEAKLAA 60
Query: 233 TIFLNAXXXXXXXXXXXXXXXXXSGVDGKLFGSVTNSDXXXXXXXXXXXXXXXXXXXPNN 292
+ +G +GKLFGSV N D P
Sbjct: 61 DLAAANQRAEKIAALEAVVIASKAGDEGKLFGSVGNRDIADAVTAAGVELAKSEVRLPLG 120
Query: 293 SIKKIGNYYIDILLH 307
+++ G++ +++ LH
Sbjct: 121 ALRTTGDFEVEVQLH 135
>TIGR_CMR|CBU_0865 [details] [associations]
symbol:CBU_0865 "ribosomal protein S18" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] HAMAP:MF_00270 InterPro:IPR001648
Pfam:PF01084 PRINTS:PR00974 ProDom:PD002239 PROSITE:PS00057
GO:GO:0006412 GO:GO:0005840 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0003735 GO:GO:0019843 Gene3D:4.10.640.10 PANTHER:PTHR13479
SUPFAM:SSF46911 TIGRFAMs:TIGR00165 HOGENOM:HOG000218466
eggNOG:COG0238 KO:K02963 ProtClustDB:PRK00391 OMA:AYISETG
RefSeq:NP_819884.1 ProteinModelPortal:Q83D75 SMR:Q83D75
PRIDE:Q83D75 GeneID:1208758 KEGG:cbu:CBU_0865 PATRIC:17930427
BioCyc:CBUR227377:GJ7S-859-MONOMER Uniprot:Q83D75
Length = 73
Score = 182 (69.1 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 29/52 (55%), Positives = 44/52 (84%)
Query: 117 FKRKKFCRFTVMNIKQIDYKDIETLKDFIQENGKIMAARLTGTCSHYQRQIT 168
F+RKKFC F N+++IDYKD+ TLKD+I E+G+++ +R+TGTC+ +QRQI+
Sbjct: 3 FRRKKFCAFDAKNLQEIDYKDVNTLKDYIMESGRVVPSRITGTCAKHQRQIS 54
>TIGR_CMR|CPS_0418 [details] [associations]
symbol:CPS_0418 "ribosomal protein L9" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS] HAMAP:MF_00503
InterPro:IPR000244 InterPro:IPR020594 Pfam:PF01281 GO:GO:0006412
GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003735
GO:GO:0019843 eggNOG:COG0359 HOGENOM:HOG000040337 KO:K02939
Gene3D:3.10.430.100 Gene3D:3.40.5.10 InterPro:IPR009027
InterPro:IPR020069 InterPro:IPR020070 PANTHER:PTHR21368
Pfam:PF03948 SUPFAM:SSF55658 SUPFAM:SSF55653 TIGRFAMs:TIGR00158
PROSITE:PS00651 RefSeq:YP_267176.1 ProteinModelPortal:Q489T8
SMR:Q489T8 STRING:Q489T8 PRIDE:Q489T8 GeneID:3520442
KEGG:cps:CPS_0418 PATRIC:21464197 OMA:TGIYEIE
BioCyc:CPSY167879:GI48-513-MONOMER Uniprot:Q489T8
Length = 150
Score = 182 (69.1 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 45/140 (32%), Positives = 66/140 (47%)
Query: 174 MQVILLKDIPNLGKLGEIIKVKNGYARNFLIPKNKARHATKFVIKEFEEKRIKLE-KTAF 232
M+VILL I LG LG+ + VK+GYARN+L+P+ KA A++ ++ FE +R +E K A
Sbjct: 1 MEVILLDKIAKLGGLGDKVSVKSGYARNYLLPQGKAVFASEANVEHFEARRADIEAKLAD 60
Query: 233 TIFLNAXXXXXXXXXXXXXXXXXSGVDGKLFGSVTNSDXXXXXXXXXXXXXXXXXXXPNN 292
+ SG +GKLFGS+ D P
Sbjct: 61 VLATAEARAAKVVALAEVTIASKSGDEGKLFGSIGTRDIADAITEAGVEITKAEVRLPLG 120
Query: 293 SIKKIGNYYIDILLHNGNST 312
+I++ G + I I LH+ T
Sbjct: 121 AIRETGEFEIAIHLHHDVDT 140
>TIGR_CMR|CBU_0867 [details] [associations]
symbol:CBU_0867 "ribosomal protein L9" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] HAMAP:MF_00503 InterPro:IPR000244
InterPro:IPR020594 Pfam:PF01281 GO:GO:0006412 GO:GO:0005840
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003735 GO:GO:0019843
eggNOG:COG0359 HOGENOM:HOG000040337 KO:K02939 Gene3D:3.10.430.100
Gene3D:3.40.5.10 InterPro:IPR009027 InterPro:IPR020069
InterPro:IPR020070 PANTHER:PTHR21368 Pfam:PF03948 SUPFAM:SSF55658
SUPFAM:SSF55653 TIGRFAMs:TIGR00158 PROSITE:PS00651
ProtClustDB:PRK00137 OMA:TGIYEIE RefSeq:NP_819886.2
ProteinModelPortal:Q83D73 GeneID:1208760 KEGG:cbu:CBU_0867
PATRIC:17930431 BioCyc:CBUR227377:GJ7S-861-MONOMER Uniprot:Q83D73
Length = 152
Score = 177 (67.4 bits), Expect = 4.2e-12, P = 4.2e-12
Identities = 41/134 (30%), Positives = 63/134 (47%)
Query: 174 MQVILLKDIPNLGKLGEIIKVKNGYARNFLIPKNKARHATKFVIKEFEEKRIKLEKTAFT 233
M++IL + + NLG +G+ + VK GYARNFL+P KA AT I EFE++R +LEK A
Sbjct: 1 MKLILQEKVANLGNIGDQVVVKPGYARNFLLPLGKAVPATPEHIAEFEKQRAELEKAAAE 60
Query: 234 IFLNAXXXXXXXXXXXXXXXXXSGVDGKLFGSVTNSDXXXXXXXXXXXXXXXXXXXPNNS 293
+ A + +G+LFGS+ +
Sbjct: 61 LLAKAKARAKKLEDKSFKITANASDEGRLFGSIGPREIAQAITEAGIEIEKREVDLSQGP 120
Query: 294 IKKIGNYYIDILLH 307
I+++G Y + + LH
Sbjct: 121 IRQVGEYEVPLRLH 134
>TIGR_CMR|CPS_0417 [details] [associations]
symbol:CPS_0417 "ribosomal protein S18" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS] HAMAP:MF_00270
InterPro:IPR001648 InterPro:IPR018275 Pfam:PF01084 PRINTS:PR00974
ProDom:PD002239 PROSITE:PS00057 GO:GO:0006412 GO:GO:0005840
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003735 GO:GO:0019843
Gene3D:4.10.640.10 PANTHER:PTHR13479 SUPFAM:SSF46911
TIGRFAMs:TIGR00165 HOGENOM:HOG000218466 eggNOG:COG0238 KO:K02963
OMA:AYISETG RefSeq:YP_267175.1 ProteinModelPortal:Q489T9 SMR:Q489T9
STRING:Q489T9 PRIDE:Q489T9 GeneID:3519660 KEGG:cps:CPS_0417
PATRIC:21464195 BioCyc:CPSY167879:GI48-512-MONOMER Uniprot:Q489T9
Length = 75
Score = 177 (67.4 bits), Expect = 4.2e-12, P = 4.2e-12
Identities = 35/71 (49%), Positives = 48/71 (67%)
Query: 117 FKRKKFCRFTVMNIKQIDYKDIETLKDFIQENGKIMAARLTGTCSHYQRQITFIRKNMQV 176
F+R+KFCRFT IDYKDI TLK++I E+GKI+ +R+TGT + YQRQ+T K +
Sbjct: 5 FRRRKFCRFTAEGATSIDYKDIATLKNYITESGKIVPSRITGTAAKYQRQLTRAIKRARY 64
Query: 177 ILLKDIPNLGK 187
+ L +L K
Sbjct: 65 LSLLPYTDLHK 75
>UNIPROTKB|P0A7T7 [details] [associations]
symbol:rpsR "30S ribosomal subunit protein S18"
species:83333 "Escherichia coli K-12" [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
HAMAP:MF_00270 InterPro:IPR001648 InterPro:IPR018275 Pfam:PF01084
PRINTS:PR00974 ProDom:PD002239 PROSITE:PS00057 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:U14003 GO:GO:0019843
PDB:3J00 PDBsum:3J00 PDB:3FIH PDB:3IZV PDB:3IZW PDBsum:3FIH
PDBsum:3IZV PDBsum:3IZW EMBL:X04022 PDB:3SFS PDB:3UOQ PDBsum:3SFS
PDBsum:3UOQ Gene3D:4.10.640.10 PANTHER:PTHR13479 SUPFAM:SSF46911
TIGRFAMs:TIGR00165 HOGENOM:HOG000218466 eggNOG:COG0238 KO:K02963
PDB:4GAS PDB:4GD1 PDBsum:4GAS PDBsum:4GD1 PDB:1M5G PDB:1P6G
PDB:1P87 PDB:1VS5 PDB:1VS7 PDB:2AVY PDB:2AW7 PDB:2GY9 PDB:2GYB
PDB:2I2P PDB:2I2U PDB:2QAL PDB:2QAN PDB:2QB9 PDB:2QBB PDB:2QBD
PDB:2QBF PDB:2QBH PDB:2QBJ PDB:2QOU PDB:2QOW PDB:2QOY PDB:2QP0
PDB:2VHO PDB:2VHP PDB:2WWL PDB:2Z4K PDB:2Z4M PDB:3DF1 PDB:3DF3
PDB:3E1A PDB:3E1C PDB:3I1M PDB:3I1O PDB:3I1Q PDB:3I1S PDB:3I1Z
PDB:3I21 PDB:3J0U PDB:3J0V PDB:3J0X PDB:3J0Z PDB:3J10 PDB:3J13
PDB:3J18 PDB:3KC4 PDB:3OAQ PDB:3OAR PDB:3OFA PDB:3OFB PDB:3OFO
PDB:3OFP PDB:3OFX PDB:3OFY PDB:3OR9 PDB:3ORA PDB:4A2I PDB:4ADV
PDB:4GAQ PDB:4GD2 PDBsum:1M5G PDBsum:1P6G PDBsum:1P87 PDBsum:1VS5
PDBsum:1VS7 PDBsum:2AVY PDBsum:2AW7 PDBsum:2GY9 PDBsum:2GYB
PDBsum:2I2P PDBsum:2I2U PDBsum:2QAL PDBsum:2QAN PDBsum:2QB9
PDBsum:2QBB PDBsum:2QBD PDBsum:2QBF PDBsum:2QBH PDBsum:2QBJ
PDBsum:2QOU PDBsum:2QOW PDBsum:2QOY PDBsum:2QP0 PDBsum:2VHO
PDBsum:2VHP PDBsum:2WWL PDBsum:2Z4K PDBsum:2Z4M PDBsum:3DF1
PDBsum:3DF3 PDBsum:3E1A PDBsum:3E1C PDBsum:3I1M PDBsum:3I1O
PDBsum:3I1Q PDBsum:3I1S PDBsum:3I1Z PDBsum:3I21 PDBsum:3J0U
PDBsum:3J0V PDBsum:3J0X PDBsum:3J0Z PDBsum:3J10 PDBsum:3J13
PDBsum:3J18 PDBsum:3KC4 PDBsum:3OAQ PDBsum:3OAR PDBsum:3OFA
PDBsum:3OFB PDBsum:3OFO PDBsum:3OFP PDBsum:3OFX PDBsum:3OFY
PDBsum:3OR9 PDBsum:3ORA PDBsum:4A2I PDBsum:4ADV PDBsum:4GAQ
PDBsum:4GD2 ProtClustDB:PRK00391 PIR:S56427 RefSeq:NP_418623.1
RefSeq:YP_492344.1 ProteinModelPortal:P0A7T7 SMR:P0A7T7
DIP:DIP-47889N IntAct:P0A7T7 MINT:MINT-1247424 PaxDb:P0A7T7
PRIDE:P0A7T7 EnsemblBacteria:EBESCT00000004399
EnsemblBacteria:EBESCT00000017904 GeneID:12930640 GeneID:948721
KEGG:ecj:Y75_p4088 KEGG:eco:b4202 PATRIC:32123979 EchoBASE:EB0910
EcoGene:EG10917 OMA:RRRYCRF BioCyc:EcoCyc:EG10917-MONOMER
BioCyc:ECOL316407:JW4160-MONOMER EvolutionaryTrace:P0A7T7
Genevestigator:P0A7T7 Uniprot:P0A7T7
Length = 75
Score = 174 (66.3 bits), Expect = 8.8e-12, P = 8.8e-12
Identities = 32/63 (50%), Positives = 47/63 (74%)
Query: 117 FKRKKFCRFTVMNIKQIDYKDIETLKDFIQENGKIMAARLTGTCSHYQRQITFIRKNMQV 176
F+R+KFCRFT +++IDYKDI TLK++I E+GKI+ +R+TGT + YQRQ+ K +
Sbjct: 5 FRRRKFCRFTAEGVQEIDYKDIATLKNYITESGKIVPSRITGTRAKYQRQLARAIKRARY 64
Query: 177 ILL 179
+ L
Sbjct: 65 LSL 67
>UNIPROTKB|Q9KUZ0 [details] [associations]
symbol:rpsR "30S ribosomal protein S18" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] HAMAP:MF_00270 InterPro:IPR001648
InterPro:IPR018275 Pfam:PF01084 PRINTS:PR00974 ProDom:PD002239
PROSITE:PS00057 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
Gene3D:4.10.640.10 PANTHER:PTHR13479 SUPFAM:SSF46911
TIGRFAMs:TIGR00165 eggNOG:COG0238 KO:K02963 ProtClustDB:PRK00391
OMA:AYISETG PIR:B82333 RefSeq:NP_230022.1 ProteinModelPortal:Q9KUZ0
SMR:Q9KUZ0 DNASU:2615047 GeneID:2615047 KEGG:vch:VC0368
PATRIC:20079807 Uniprot:Q9KUZ0
Length = 75
Score = 173 (66.0 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 31/63 (49%), Positives = 46/63 (73%)
Query: 117 FKRKKFCRFTVMNIKQIDYKDIETLKDFIQENGKIMAARLTGTCSHYQRQITFIRKNMQV 176
F+R+KFCRFT +++IDYKD+ TLK++I E GKI+ +R+TGT + YQRQ+ K +
Sbjct: 5 FRRRKFCRFTAEGVQEIDYKDVATLKNYITEAGKIVPSRITGTSAKYQRQLARAIKRARY 64
Query: 177 ILL 179
+ L
Sbjct: 65 LAL 67
>TIGR_CMR|SO_3928 [details] [associations]
symbol:SO_3928 "ribosomal protein S18" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_00270 InterPro:IPR001648 InterPro:IPR018275 Pfam:PF01084
PRINTS:PR00974 ProDom:PD002239 PROSITE:PS00057 GO:GO:0006412
GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003735
GO:GO:0019843 Gene3D:4.10.640.10 PANTHER:PTHR13479 SUPFAM:SSF46911
TIGRFAMs:TIGR00165 HOGENOM:HOG000218466 eggNOG:COG0238 KO:K02963
ProtClustDB:PRK00391 OMA:AYISETG RefSeq:NP_719459.1
ProteinModelPortal:Q8EAH4 SMR:Q8EAH4 GeneID:1171567
KEGG:son:SO_3928 PATRIC:23527536 Uniprot:Q8EAH4
Length = 75
Score = 173 (66.0 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 32/63 (50%), Positives = 46/63 (73%)
Query: 117 FKRKKFCRFTVMNIKQIDYKDIETLKDFIQENGKIMAARLTGTCSHYQRQITFIRKNMQV 176
F+R+KFCRFT + +IDYKDI TLK++I E+GKI+ +R+TGT + YQRQ+ K +
Sbjct: 5 FRRRKFCRFTAEGVAEIDYKDIVTLKNYITESGKIVPSRITGTSAKYQRQLARAIKRARY 64
Query: 177 ILL 179
+ L
Sbjct: 65 LSL 67
>TIGR_CMR|VC_0368 [details] [associations]
symbol:VC_0368 "ribosomal protein S18" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_00270 InterPro:IPR001648 InterPro:IPR018275 Pfam:PF01084
PRINTS:PR00974 ProDom:PD002239 PROSITE:PS00057 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 Gene3D:4.10.640.10 PANTHER:PTHR13479 SUPFAM:SSF46911
TIGRFAMs:TIGR00165 eggNOG:COG0238 KO:K02963 ProtClustDB:PRK00391
OMA:AYISETG PIR:B82333 RefSeq:NP_230022.1 ProteinModelPortal:Q9KUZ0
SMR:Q9KUZ0 DNASU:2615047 GeneID:2615047 KEGG:vch:VC0368
PATRIC:20079807 Uniprot:Q9KUZ0
Length = 75
Score = 173 (66.0 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 31/63 (49%), Positives = 46/63 (73%)
Query: 117 FKRKKFCRFTVMNIKQIDYKDIETLKDFIQENGKIMAARLTGTCSHYQRQITFIRKNMQV 176
F+R+KFCRFT +++IDYKD+ TLK++I E GKI+ +R+TGT + YQRQ+ K +
Sbjct: 5 FRRRKFCRFTAEGVQEIDYKDVATLKNYITEAGKIVPSRITGTSAKYQRQLARAIKRARY 64
Query: 177 ILL 179
+ L
Sbjct: 65 LAL 67
>TIGR_CMR|GSU_0668 [details] [associations]
symbol:GSU_0668 "ribosomal protein L9" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] HAMAP:MF_00503
InterPro:IPR000244 InterPro:IPR020594 Pfam:PF01281 GO:GO:0006412
GO:GO:0005840 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735
GO:GO:0019843 eggNOG:COG0359 HOGENOM:HOG000040337 KO:K02939
Gene3D:3.10.430.100 Gene3D:3.40.5.10 InterPro:IPR009027
InterPro:IPR020069 InterPro:IPR020070 PANTHER:PTHR21368
Pfam:PF03948 SUPFAM:SSF55658 SUPFAM:SSF55653 TIGRFAMs:TIGR00158
PROSITE:PS00651 ProtClustDB:PRK00137 OMA:TGIYEIE RefSeq:NP_951725.1
ProteinModelPortal:Q74FE1 GeneID:2685560 KEGG:gsu:GSU0668
PATRIC:22024095 BioCyc:GSUL243231:GH27-687-MONOMER Uniprot:Q74FE1
Length = 148
Score = 167 (63.8 bits), Expect = 4.9e-11, P = 4.9e-11
Identities = 38/97 (39%), Positives = 54/97 (55%)
Query: 174 MQVILLKDIPNLGKLGEIIKVKNGYARNFLIPKNKARHATKFVIKEFEEKRIKLEKTAFT 233
M+VIL +++ NLG +G+I+KV GYARN+LIP+N A AT+ K E + +LE
Sbjct: 1 MKVILKENVENLGHIGDIVKVAPGYARNYLIPRNFAIEATEKNAKALEHAKRQLEYKRNK 60
Query: 234 IFLNAXXXXXXXXXXXXXXXXXSGVDGKLFGSVTNSD 270
+ A +G +GKLFGSVTN +
Sbjct: 61 VLEQARLLVAKIEGLSLSISHQAGEEGKLFGSVTNME 97
>TAIR|locus:2036293 [details] [associations]
symbol:AT1G34380 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA]
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF01367 Pfam:PF02739
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0003677 GO:GO:0008152
GO:GO:0008409 SUPFAM:SSF47807 UniGene:At.39746 UniGene:At.64018
EMBL:BT015335 EMBL:BT015711 IPI:IPI00519657 RefSeq:NP_001117409.1
ProteinModelPortal:Q66GR7 STRING:Q66GR7 EnsemblPlants:AT1G34380.2
GeneID:840340 KEGG:ath:AT1G34380 TAIR:At1g34380
HOGENOM:HOG000006229 InParanoid:Q66GR7 OMA:CIMGDEV PhylomeDB:Q66GR7
ProtClustDB:CLSN2925451 Genevestigator:Q66GR7 Uniprot:Q66GR7
Length = 347
Score = 182 (69.1 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 48/166 (28%), Positives = 87/166 (52%)
Query: 825 IACIFDAKGKNFRNILYPSYKATRKKMPYNLILQI--NLIHQMVKAIGWPILIIKGVEAD 882
IA I +G R L PSYKA RK + + + ++++ P++ I+G EAD
Sbjct: 113 IAVIDGEEGNQRRRELLPSYKAHRKSPNHGRYSKRPHQFVDEVLRKCNVPVVRIEGHEAD 172
Query: 883 DVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIALI------NNNKIHDRTTIISRFG 936
DV+ TL +QAV + + +I++ DKD QL+S + ++ + +++
Sbjct: 173 DVVATLMEQAVQR-GYRAVIASPDKDFKQLISENVQIVIPLADLRRWSFYTLKHYHAQYN 231
Query: 937 VSPEKIVDYFSLIGDMSDNLPGVKKIGP----KTAVKLLNQYNSLE 978
P+ + + ++GD D +PG++ + P KTA+KL+ ++ SLE
Sbjct: 232 CDPQSDLSFRCIMGDEVDGVPGIQHMVPAFGRKTAMKLVRKHGSLE 277
>TIGR_CMR|CHY_0039 [details] [associations]
symbol:CHY_0039 "ribosomal protein L9" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] HAMAP:MF_00503 InterPro:IPR000244 InterPro:IPR020594
Pfam:PF01281 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 eggNOG:COG0359 KO:K02939
Gene3D:3.10.430.100 Gene3D:3.40.5.10 InterPro:IPR009027
InterPro:IPR020069 InterPro:IPR020070 PANTHER:PTHR21368
Pfam:PF03948 SUPFAM:SSF55658 SUPFAM:SSF55653 TIGRFAMs:TIGR00158
PROSITE:PS00651 HOGENOM:HOG000040336 OMA:ITVPDIH RefSeq:YP_358911.1
ProteinModelPortal:Q3AG23 STRING:Q3AG23 GeneID:3728530
KEGG:chy:CHY_0039 PATRIC:21273275 BioCyc:CHYD246194:GJCN-39-MONOMER
Uniprot:Q3AG23
Length = 151
Score = 158 (60.7 bits), Expect = 4.4e-10, P = 4.4e-10
Identities = 37/134 (27%), Positives = 61/134 (45%)
Query: 174 MQVILLKDIPNLGKLGEIIKVKNGYARNFLIPKNKARHATKFVIKEFEEKRIKLEKTAFT 233
M+VILL ++ LGK G++++V GY RN+LI K A AT+ +KE ++++ +
Sbjct: 1 MKVILLTEVKKLGKKGDVVEVAEGYGRNYLIAKGLAVEATEGKLKELQQQKEAANRRKEK 60
Query: 234 IFLNAXXXXXXXXXXXXXXXXXSGVDGKLFGSVTNSDXXXXXXXXXXXXXXXXXXXPNNS 293
A G +GKLFG++T+ D +
Sbjct: 61 ELQEARSLAEKLKNIELVLYGKGGENGKLFGAITSKDIAEALEKNYQIKIDKRKLDLKEN 120
Query: 294 IKKIGNYYIDILLH 307
IK +G Y +++ LH
Sbjct: 121 IKALGVYTVEVKLH 134
>TIGR_CMR|BA_5721 [details] [associations]
symbol:BA_5721 "ribosomal protein S18" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_00270 InterPro:IPR001648 InterPro:IPR018275 Pfam:PF01084
PRINTS:PR00974 ProDom:PD002239 PROSITE:PS00057 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 Gene3D:4.10.640.10
PANTHER:PTHR13479 SUPFAM:SSF46911 TIGRFAMs:TIGR00165
HOGENOM:HOG000218466 eggNOG:COG0238 KO:K02963 ProtClustDB:PRK00391
RefSeq:NP_847867.1 RefSeq:YP_022407.1 RefSeq:YP_031562.1
ProteinModelPortal:Q81JI4 SMR:Q81JI4 DNASU:1085488
EnsemblBacteria:EBBACT00000011085 EnsemblBacteria:EBBACT00000017466
EnsemblBacteria:EBBACT00000023515 GeneID:1085488 GeneID:2816010
GeneID:2849203 KEGG:ban:BA_5721 KEGG:bar:GBAA_5721 KEGG:bat:BAS5325
OMA:MARPFFR BioCyc:BANT260799:GJAJ-5402-MONOMER
BioCyc:BANT261594:GJ7F-5578-MONOMER Uniprot:Q81JI4
Length = 77
Score = 155 (59.6 bits), Expect = 9.3e-10, P = 9.3e-10
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 118 KRKKFCRFTVMNIKQIDYKDIETLKDFIQENGKIMAARLTGTCSHYQRQITF-IRKNMQV 176
KR+K C FT I +IDYKD++ LK F+ E GKI+ R+TGT + YQR++T I++ Q+
Sbjct: 10 KRRKVCFFTSNGITRIDYKDVDLLKRFVSERGKILPRRVTGTSAKYQRKLTVAIKRARQM 69
Query: 177 ILL 179
LL
Sbjct: 70 ALL 72
>TIGR_CMR|CJE_0766 [details] [associations]
symbol:CJE_0766 "ribosomal protein L9" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] HAMAP:MF_00503 InterPro:IPR000244 InterPro:IPR020594
Pfam:PF01281 GO:GO:0006412 GO:GO:0005840 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0003735 GO:GO:0019843
eggNOG:COG0359 KO:K02939 Gene3D:3.10.430.100 Gene3D:3.40.5.10
InterPro:IPR009027 InterPro:IPR020069 InterPro:IPR020070
PANTHER:PTHR21368 Pfam:PF03948 SUPFAM:SSF55658 SUPFAM:SSF55653
TIGRFAMs:TIGR00158 PROSITE:PS00651 ProtClustDB:PRK00137
HOGENOM:HOG000040336 OMA:ITVPDIH RefSeq:YP_178775.1
ProteinModelPortal:Q5HVB0 STRING:Q5HVB0 GeneID:3230718
KEGG:cjr:CJE0766 PATRIC:20043265 BioCyc:CJEJ195099:GJC0-782-MONOMER
Uniprot:Q5HVB0
Length = 147
Score = 155 (59.6 bits), Expect = 9.3e-10, P = 9.3e-10
Identities = 37/98 (37%), Positives = 54/98 (55%)
Query: 174 MQVILLKDIPNLGKLGEIIKVKNGYARNFLIPKNKARHATKFVIKEFE-EKRIKLEKTAF 232
M+V+L+KD+ LGK GEI +VK+GY +NFLI K A+ AT V++++E +K+ + E F
Sbjct: 1 MKVLLIKDVKALGKAGEIKEVKDGYGQNFLIAKGFAKAATNEVLRKYESDKKKEAENLRF 60
Query: 233 TIFLNAXXXXXXXXXXXXXXXXXSGVDGKLFGSVTNSD 270
I N G +G LFG VT +
Sbjct: 61 EI-ANLEKLKEELSKITLEISKPVGANGSLFGGVTKDE 97
>UNIPROTKB|P66315 [details] [associations]
symbol:rplI "50S ribosomal protein L9" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] HAMAP:MF_00503 InterPro:IPR000244 InterPro:IPR000644
InterPro:IPR020594 SMART:SM00116 Pfam:PF01281 GO:GO:0005829
GO:GO:0005886 GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0006412 EMBL:BX842572 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0359 HOGENOM:HOG000040337
KO:K02939 Gene3D:3.10.430.100 Gene3D:3.40.5.10 InterPro:IPR009027
InterPro:IPR020069 InterPro:IPR020070 PANTHER:PTHR21368
Pfam:PF03948 SUPFAM:SSF55658 SUPFAM:SSF55653 TIGRFAMs:TIGR00158
PROSITE:PS00651 ProtClustDB:PRK00137 OMA:ITVPDIH PIR:H70913
RefSeq:NP_214570.1 RefSeq:NP_334470.1 RefSeq:YP_006513370.1
ProteinModelPortal:P66315 SMR:P66315 PRIDE:P66315
EnsemblBacteria:EBMYCT00000002727 EnsemblBacteria:EBMYCT00000069293
GeneID:13316034 GeneID:887010 GeneID:922725 KEGG:mtc:MT0062
KEGG:mtu:Rv0056 KEGG:mtv:RVBD_0056 PATRIC:18121857
TubercuList:Rv0056 Uniprot:P66315
Length = 152
Score = 152 (58.6 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 39/137 (28%), Positives = 64/137 (46%)
Query: 174 MQVILLKDIPNLGKLGEIIKVKNGYARNFLIPKNKARHATKFVIKEFEE-KRIKLEKTAF 232
M++IL D+ +LG +G+ ++VK+GY RNFL+P+ A A++ K+ +E +R + K+
Sbjct: 1 MKLILTADVDHLGSIGDTVEVKDGYGRNFLLPRGLAIVASRGAQKQADEIRRARETKSVR 60
Query: 233 TI-FLNAXXXXXXXXXXXXXXXXXSGVDGKLFGSVTNSDXXXXXXXXXX-XXXXXXXXXP 290
+ N S GKLFGSVT +D P
Sbjct: 61 DLEHANEIKAAIEALGPIALPVKTSADSGKLFGSVTAADVVAAIKKAGGPNLDKRIVRLP 120
Query: 291 NNSIKKIGNYYIDILLH 307
IK +G +++ + LH
Sbjct: 121 KTHIKAVGTHFVSVHLH 137
>UNIPROTKB|Q83D81 [details] [associations]
symbol:CBU_0859 "Hypothetical membrane spanning protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
KO:K09008 Gene3D:3.40.1230.10 InterPro:IPR007523 Pfam:PF04430
SUPFAM:SSF64076 EMBL:AE016828 GenomeReviews:AE016828_GR
HOGENOM:HOG000261143 PANTHER:PTHR21192 RefSeq:NP_819878.1
ProteinModelPortal:Q83D81 GeneID:1208752 KEGG:cbu:CBU_0859
PATRIC:17930417 OMA:GYIEINK ProtClustDB:CLSK914368
BioCyc:CBUR227377:GJ7S-854-MONOMER Uniprot:Q83D81
Length = 123
Score = 152 (58.6 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 39/101 (38%), Positives = 55/101 (54%)
Query: 1330 NGIFYTKSFLVSP-EIDPIFWSINKYNFLTKKDFIHISKFNPSVVILGTGNIQHFIHPKL 1388
N + YT S LVSP + P W + L + I P +VILGTG+ +F P
Sbjct: 25 NKVTYTSSLLVSPYRLVPE-WGPRSLDELGSEHIEAILALEPEIVILGTGH--NFKWPSK 81
Query: 1389 TYILT--QKNIGIECMNNQAACRTYNILVSDDIKAMLALIL 1427
T + Q+ IG+ECM+ AACRTY L+S+ K + AL++
Sbjct: 82 TQLAPFHQRRIGVECMDTGAACRTYTALMSEGRKVVAALLI 122
>TIGR_CMR|CBU_0859 [details] [associations]
symbol:CBU_0859 "conserved hypothetical protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
KO:K09008 Gene3D:3.40.1230.10 InterPro:IPR007523 Pfam:PF04430
SUPFAM:SSF64076 EMBL:AE016828 GenomeReviews:AE016828_GR
HOGENOM:HOG000261143 PANTHER:PTHR21192 RefSeq:NP_819878.1
ProteinModelPortal:Q83D81 GeneID:1208752 KEGG:cbu:CBU_0859
PATRIC:17930417 OMA:GYIEINK ProtClustDB:CLSK914368
BioCyc:CBUR227377:GJ7S-854-MONOMER Uniprot:Q83D81
Length = 123
Score = 152 (58.6 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 39/101 (38%), Positives = 55/101 (54%)
Query: 1330 NGIFYTKSFLVSP-EIDPIFWSINKYNFLTKKDFIHISKFNPSVVILGTGNIQHFIHPKL 1388
N + YT S LVSP + P W + L + I P +VILGTG+ +F P
Sbjct: 25 NKVTYTSSLLVSPYRLVPE-WGPRSLDELGSEHIEAILALEPEIVILGTGH--NFKWPSK 81
Query: 1389 TYILT--QKNIGIECMNNQAACRTYNILVSDDIKAMLALIL 1427
T + Q+ IG+ECM+ AACRTY L+S+ K + AL++
Sbjct: 82 TQLAPFHQRRIGVECMDTGAACRTYTALMSEGRKVVAALLI 122
>TIGR_CMR|SPO_2283 [details] [associations]
symbol:SPO_2283 "ribosomal protein L9" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] HAMAP:MF_00503
InterPro:IPR000244 InterPro:IPR020594 Pfam:PF01281 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0359 KO:K02939 Gene3D:3.10.430.100
Gene3D:3.40.5.10 InterPro:IPR009027 InterPro:IPR020069
InterPro:IPR020070 PANTHER:PTHR21368 Pfam:PF03948 SUPFAM:SSF55658
SUPFAM:SSF55653 TIGRFAMs:TIGR00158 PROSITE:PS00651
HOGENOM:HOG000040335 ProtClustDB:PRK00137 OMA:ITVPDIH
RefSeq:YP_167507.1 ProteinModelPortal:Q5LR48 GeneID:3192811
KEGG:sil:SPO2283 PATRIC:23377921 Uniprot:Q5LR48
Length = 200
Score = 152 (58.6 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 40/134 (29%), Positives = 62/134 (46%)
Query: 174 MQVILLKDIPNLGKLGEIIKVKNGYARNFLIPKNKARHATKFVIKEFEEKRIKLEKTAFT 233
MQVILL+ + LG++G+++ VK+GYARNFL+P++KA A+ I +FE ++ +LE
Sbjct: 1 MQVILLERVAKLGQMGDVVDVKSGYARNFLLPQSKALVASDANIAQFEAQKAQLEARNLE 60
Query: 234 IFLNAXXXXXXXXXXXXXXXXXSGVDGKLFGSVTNSDXXXXXXXXXXXXXXXXXXXPNNS 293
A + G L+GSVT D
Sbjct: 61 TKQEAEALAVKLDGQQFVVIRSASDAGALYGSVTPRDAAEAATEAGFSVDKKQIALIA-P 119
Query: 294 IKKIGNYYIDILLH 307
IK +G + + + LH
Sbjct: 120 IKDLGLHTVAVRLH 133
>TIGR_CMR|BA_5718 [details] [associations]
symbol:BA_5718 "ribosomal protein L9" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_00503 InterPro:IPR000244 InterPro:IPR020594 Pfam:PF01281
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 eggNOG:COG0359 KO:K02939
Gene3D:3.10.430.100 Gene3D:3.40.5.10 InterPro:IPR009027
InterPro:IPR020069 InterPro:IPR020070 PANTHER:PTHR21368
Pfam:PF03948 SUPFAM:SSF55658 SUPFAM:SSF55653 TIGRFAMs:TIGR00158
PROSITE:PS00651 ProtClustDB:PRK00137 RefSeq:NP_847864.1
RefSeq:YP_022404.1 RefSeq:YP_031559.1 ProteinModelPortal:Q81JI7
SMR:Q81JI7 DNASU:1085485 EnsemblBacteria:EBBACT00000011666
EnsemblBacteria:EBBACT00000015454 EnsemblBacteria:EBBACT00000020490
GeneID:1085485 GeneID:2816040 GeneID:2851126 KEGG:ban:BA_5718
KEGG:bar:GBAA_5718 KEGG:bat:BAS5322 HOGENOM:HOG000040336
OMA:ITVPDIH BioCyc:BANT260799:GJAJ-5399-MONOMER
BioCyc:BANT261594:GJ7F-5575-MONOMER Uniprot:Q81JI7
Length = 148
Score = 151 (58.2 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 39/134 (29%), Positives = 59/134 (44%)
Query: 174 MQVILLKDIPNLGKLGEIIKVKNGYARNFLIPKNKARHATKFVIKEFEEKRIKLEKTAFT 233
M+VI LKD+ GK GE+ V +GYA NFL+ + A AT +K E ++ K EK A
Sbjct: 1 MKVIFLKDVKGKGKKGEVKNVPDGYANNFLLKQGLAAEATNSSMKTLEAQKRKEEKDAAA 60
Query: 234 IFLNAXXXXXXXXXXXXXXXXXSGVDGKLFGSVTNSDXXXXXXXXXXXXXXXXXXXPNNS 293
+A SG G+LFGS+T+ +++
Sbjct: 61 ELESAKQLKETLEKLTVELKAKSGEGGRLFGSITSKQIVDAMQKSHKIKLDKRKFEMDDA 120
Query: 294 IKKIGNYYIDILLH 307
I+ +G + + LH
Sbjct: 121 IRALGYTNVTVKLH 134
>TIGR_CMR|CHY_0037 [details] [associations]
symbol:CHY_0037 "ribosomal protein S18" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] HAMAP:MF_00270 InterPro:IPR001648 InterPro:IPR018275
Pfam:PF01084 PRINTS:PR00974 ProDom:PD002239 PROSITE:PS00057
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 Gene3D:4.10.640.10 PANTHER:PTHR13479
SUPFAM:SSF46911 TIGRFAMs:TIGR00165 HOGENOM:HOG000218466
eggNOG:COG0238 KO:K02963 ProtClustDB:PRK00391 RefSeq:YP_358909.1
ProteinModelPortal:Q3AG25 STRING:Q3AG25 GeneID:3728735
KEGG:chy:CHY_0037 PATRIC:21273271 OMA:AYISETG
BioCyc:CHYD246194:GJCN-37-MONOMER Uniprot:Q3AG25
Length = 76
Score = 139 (54.0 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 24/62 (38%), Positives = 40/62 (64%)
Query: 118 KRKKFCRFTVMNIKQIDYKDIETLKDFIQENGKIMAARLTGTCSHYQRQITFIRKNMQVI 177
++K+ C F V I +DYKD+ LK +I E GKI+ R++G C+ +QR++T K +++
Sbjct: 9 RKKRVCAFCVDKIVDVDYKDVNRLKKYITERGKILPRRISGNCARHQRRLTTAIKRARIM 68
Query: 178 LL 179
L
Sbjct: 69 AL 70
>TIGR_CMR|GSU_0666 [details] [associations]
symbol:GSU_0666 "ribosomal protein S18" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] HAMAP:MF_00270
InterPro:IPR001648 InterPro:IPR018275 Pfam:PF01084 PRINTS:PR00974
ProDom:PD002239 PROSITE:PS00057 GO:GO:0006412 GO:GO:0005840
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735 GO:GO:0019843
Gene3D:4.10.640.10 PANTHER:PTHR13479 SUPFAM:SSF46911
TIGRFAMs:TIGR00165 HOGENOM:HOG000218466 eggNOG:COG0238 KO:K02963
ProtClustDB:PRK00391 OMA:RRRYCRF RefSeq:NP_951723.1
ProteinModelPortal:Q74FE3 GeneID:2685555 KEGG:gsu:GSU0666
PATRIC:22024091 BioCyc:GSUL243231:GH27-685-MONOMER Uniprot:Q74FE3
Length = 103
Score = 138 (53.6 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 29/63 (46%), Positives = 38/63 (60%)
Query: 117 FKRKKFCRFTVMNIKQIDYKDIETLKDFIQENGKIMAARLTGTCSHYQRQITFIRKNMQV 176
F+R+K CRF IDYKD L+ FI E GKI+ R++G CS +QR+IT K +
Sbjct: 31 FQRRKVCRFCADKTLVIDYKDPRVLRSFITERGKIVPRRISGNCSAHQREITEAIKRARN 90
Query: 177 ILL 179
I L
Sbjct: 91 IAL 93
>TAIR|locus:2082127 [details] [associations]
symbol:RPL9 "ribosomal protein L9" species:3702
"Arabidopsis thaliana" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA;ISS] [GO:0006412
"translation" evidence=IEA;ISS;TAS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0042254 "ribosome biogenesis" evidence=ISS]
[GO:0000311 "plastid large ribosomal subunit" evidence=TAS]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] InterPro:IPR000244 InterPro:IPR020594 Pfam:PF01281
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006412
GO:GO:0009941 GO:GO:0003735 GO:GO:0019843 EMBL:AL391254
GO:GO:0000311 EMBL:Z11129 EMBL:Z11509 EMBL:BT000914 IPI:IPI00535863
PIR:S20943 RefSeq:NP_190075.1 UniGene:At.174
ProteinModelPortal:P25864 SMR:P25864 STRING:P25864 PaxDb:P25864
PRIDE:P25864 ProMEX:P25864 EnsemblPlants:AT3G44890.1 GeneID:823623
KEGG:ath:AT3G44890 GeneFarm:79 TAIR:At3g44890 eggNOG:COG0359
HOGENOM:HOG000040337 InParanoid:P25864 KO:K02939 OMA:GKQIFGS
PhylomeDB:P25864 ProtClustDB:CLSN2684619 EvolutionaryTrace:P25864
Genevestigator:P25864 GermOnline:AT3G44890 Gene3D:3.10.430.100
Gene3D:3.40.5.10 InterPro:IPR009027 InterPro:IPR020069
InterPro:IPR020070 PANTHER:PTHR21368 Pfam:PF03948 SUPFAM:SSF55658
SUPFAM:SSF55653 TIGRFAMs:TIGR00158 PROSITE:PS00651 Uniprot:P25864
Length = 197
Score = 142 (55.0 bits), Expect = 9.0e-08, P = 9.0e-08
Identities = 44/141 (31%), Positives = 65/141 (46%)
Query: 171 RKNMQVILLKDIPNLGKLGEIIKVKNGYARNFLIPKNKARHATKFVIKEF--EEKRIKLE 228
+K +VIL +D+ +LGK G+++ VK G+ RNFL+P KA+ T ++KE E++RI+ E
Sbjct: 47 KKLRKVILKEDVTDLGKQGQLLDVKAGFFRNFLLPTGKAQLMTPLLLKELKMEDERIEAE 106
Query: 229 KTAFTIFLNAXXXXXXXXXXXXXXXXXSGVDGKL-FGSVTNSDXXXXXXXXXXXXXXXXX 287
K + A G GKL FGSVT D
Sbjct: 107 KQR--VKEEAQQLAMVFQTVGAFKVKRKGGKGKLIFGSVTAQDLVDIIKSQLQKDIDKRL 164
Query: 288 XX-PNNSIKKIGNYYIDILLH 307
P I++ G Y ++ LH
Sbjct: 165 VSLPE--IRETGEYIAELKLH 183
>TIGR_CMR|ECH_0310 [details] [associations]
symbol:ECH_0310 "ribosomal protein L9" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
HAMAP:MF_00503 InterPro:IPR000244 InterPro:IPR020594 Pfam:PF01281
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0359 KO:K02939
Gene3D:3.10.430.100 Gene3D:3.40.5.10 InterPro:IPR009027
InterPro:IPR020069 InterPro:IPR020070 PANTHER:PTHR21368
Pfam:PF03948 SUPFAM:SSF55658 SUPFAM:SSF55653 TIGRFAMs:TIGR00158
PROSITE:PS00651 HOGENOM:HOG000040335 OMA:HYRNIFF
ProtClustDB:PRK00137 RefSeq:YP_507131.1 ProteinModelPortal:Q2GHF2
STRING:Q2GHF2 GeneID:3926934 KEGG:ech:ECH_0310 PATRIC:20576125
BioCyc:ECHA205920:GJNR-310-MONOMER Uniprot:Q2GHF2
Length = 208
Score = 144 (55.7 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 43/134 (32%), Positives = 60/134 (44%)
Query: 174 MQVILLKDIPNLGKLGEIIKVKNGYARNFLIPKNKARHATKFVIKEFEEKRIKLEKTAFT 233
+ VIL + + NLGK G ++KVK GYAR +L+ + KA ATK +K EE+ + +EK
Sbjct: 2 LSVILKESVRNLGKAGMVLKVKPGYAR-YLLTQKKAVRATKENLKSLEEQYLFIEKENLE 60
Query: 234 IFLNAXXXXXXXXXXXXXXXXXSGVDGKLFGSVTNSDXXXXXXXXXXXXXXXXXXXPNNS 293
A + DGKLFGSVT +
Sbjct: 61 KLEAAKVLKASLEDEFLIITRQAADDGKLFGSVTPKCISKLLSDKGYNIHYRNIFF-YSV 119
Query: 294 IKKIGNYYIDILLH 307
IK IG Y +++ LH
Sbjct: 120 IKYIGEYVVNLELH 133
>UNIPROTKB|Q10699 [details] [associations]
symbol:MT2151 "5'-3' exonuclease" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
InterPro:IPR002421 InterPro:IPR003583 InterPro:IPR008918
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF01367 Pfam:PF02739
SMART:SM00278 SMART:SM00279 SMART:SM00475 GO:GO:0005618
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0003677 GO:GO:0006281 EMBL:BX842578 GO:GO:0090305
GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807 PIR:E70767
RefSeq:NP_216606.1 RefSeq:NP_336618.1 ProteinModelPortal:Q10699
SMR:Q10699 EnsemblBacteria:EBMYCT00000002777
EnsemblBacteria:EBMYCT00000070703 GeneID:887924 GeneID:924576
KEGG:mtc:MT2151 KEGG:mtu:Rv2090 PATRIC:18126492 TubercuList:Rv2090
HOGENOM:HOG000040581 OMA:WRVDLIP ProtClustDB:CLSK872003
Uniprot:Q10699
Length = 318
Score = 153 (58.9 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 47/151 (31%), Positives = 78/151 (51%)
Query: 779 IDGSSCIYRAFYALPD-IRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGK-NF 836
+DG+S +R+F+ +P I D PV A+ G I + + R +A D + F
Sbjct: 8 LDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDLDWRPQF 67
Query: 837 RNILYPSYKATR------------KKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDV 884
R L PSYKA R +++P L Q+++I +++ A G + G EADDV
Sbjct: 68 RVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGFEADDV 127
Query: 885 IGTLAKQAVTKHNLKVIISTNDKDMAQLVSN 915
+GTLA + + VI+ + D+D+ Q+V++
Sbjct: 128 LGTLATR---ERRDPVIVVSGDRDLLQVVAD 155
Score = 143 (55.4 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 43/150 (28%), Positives = 77/150 (51%)
Query: 842 PSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNLKVI 901
P+ + +++P L Q+++I +++ A G + G EADDV+GTLA + + VI
Sbjct: 85 PNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGFEADDVLGTLATR---ERRDPVI 141
Query: 902 ISTNDKDMAQLVSN-----KIALINNN----KIHDRTTIISRFGVSPEKI-VDYFSLI-- 949
+ + D+D+ Q+V++ ++ + + + R+G+ + Y L
Sbjct: 142 VVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVAERYGLPAHRAGAAYAELALL 201
Query: 950 -GDMSDNLPGVKKIGPKTAVKLLNQYNSLE 978
GD SD LPGV +G KTA LL ++ SL+
Sbjct: 202 RGDPSDGLPGVPGVGEKTAATLLARHGSLD 231
>TIGR_CMR|GSU_0665 [details] [associations]
symbol:GSU_0665 "ribosomal protein S6" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] HAMAP:MF_00360
InterPro:IPR000529 InterPro:IPR020814 Pfam:PF01250 PROSITE:PS01048
GO:GO:0006412 GO:GO:0005840 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003735 GO:GO:0019843 Gene3D:3.30.70.60 InterPro:IPR014717
SUPFAM:SSF54995 eggNOG:COG0360 KO:K02990 ProtClustDB:PRK00453
TIGRFAMs:TIGR00166 HOGENOM:HOG000040440 OMA:MVESKDW
RefSeq:NP_951722.1 ProteinModelPortal:Q74FE4 GeneID:2685562
KEGG:gsu:GSU0665 PATRIC:22024089 BioCyc:GSUL243231:GH27-684-MONOMER
Uniprot:Q74FE4
Length = 117
Score = 129 (50.5 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 17 HRLEDWGRRSLAYQIKKVIKAHYICFNIEINKKTLLEIETSFRFNDAILRYLTIKTKK 74
HRLEDWG R LAY +KK ++ Y + + + E+E R +D +LRY ++K +K
Sbjct: 39 HRLEDWGVRKLAYPVKKSVRGRYYYVRFDGDAPLIAELERRLRLDDKVLRYQSVKLEK 96
>TIGR_CMR|DET_0541 [details] [associations]
symbol:DET_0541 "ribosomal protein L9" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
HAMAP:MF_00503 InterPro:IPR000244 InterPro:IPR020594 Pfam:PF01281
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0019843 eggNOG:COG0359 KO:K02939
Gene3D:3.10.430.100 Gene3D:3.40.5.10 InterPro:IPR009027
InterPro:IPR020069 InterPro:IPR020070 PANTHER:PTHR21368
Pfam:PF03948 SUPFAM:SSF55658 SUPFAM:SSF55653 TIGRFAMs:TIGR00158
PROSITE:PS00651 ProtClustDB:PRK00137 HOGENOM:HOG000040336
RefSeq:YP_181285.1 ProteinModelPortal:Q3Z914 STRING:Q3Z914
GeneID:3230133 KEGG:det:DET0541 PATRIC:21608149 OMA:MYGSVTI
BioCyc:DETH243164:GJNF-541-MONOMER Uniprot:Q3Z914
Length = 151
Score = 128 (50.1 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 33/131 (25%), Positives = 53/131 (40%)
Query: 174 MQVILLKDIPNLGKLGEIIKVKNGYARNFLIPKNKARHATKFVIKEFEEKRIKLEKTAFT 233
M+V LKD+P GK G++ +V +GYARN+LIP A A+ V E K+ ++
Sbjct: 1 MKVAFLKDVPGRGKTGDVKEVNDGYARNYLIPNKLAMPASASVTSEIAAKQAAEDRRKAK 60
Query: 234 IFLNAXXXXXXXXXXXXXXXXXSGVDGKLFGSVTNSDXXXXXXXXXXXXXXXXXXXPNNS 293
+G KL+G VT + +
Sbjct: 61 AEAEMAQLAKELDGTNVSIKAKTGAKDKLYGQVTTTVIAAEIEKQTGKAIDKRKLELSEP 120
Query: 294 IKKIGNYYIDI 304
I+++G+Y + I
Sbjct: 121 IRQLGSYEVVI 131
>TIGR_CMR|SPO_2282 [details] [associations]
symbol:SPO_2282 "ribosomal protein S18" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_00270 InterPro:IPR001648 InterPro:IPR018275 Pfam:PF01084
PRINTS:PR00974 ProDom:PD002239 PROSITE:PS00057 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 Gene3D:4.10.640.10 PANTHER:PTHR13479 SUPFAM:SSF46911
TIGRFAMs:TIGR00165 HOGENOM:HOG000218466 eggNOG:COG0238 KO:K02963
ProtClustDB:PRK00391 OMA:RRRYCRF RefSeq:YP_167506.1 HSSP:Q5SLQ0
ProteinModelPortal:Q5LR49 SMR:Q5LR49 GeneID:3193473
KEGG:sil:SPO2282 PATRIC:23377919 Uniprot:Q5LR49
Length = 75
Score = 122 (48.0 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 115 PLFKRKKFCRFTVMNIKQIDYKDIETLKDFIQENGKIMAARLTGTCSHYQRQITFIRKNM 174
P F+R+K C F+ N +IDYKD + L+ +I E GKI+ +R+T + QR++ K
Sbjct: 5 PFFRRRKVCPFSGDNAPKIDYKDTKLLQRYISERGKIVPSRITAVSAKKQRELARAIKRA 64
Query: 175 QVILL 179
+ + L
Sbjct: 65 RFLAL 69
>TIGR_CMR|APH_0153 [details] [associations]
symbol:APH_0153 "ribosomal protein L9" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS] HAMAP:MF_00503
InterPro:IPR000244 InterPro:IPR020594 Pfam:PF01281 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0019843 eggNOG:COG0359 KO:K02939 Gene3D:3.10.430.100
Gene3D:3.40.5.10 InterPro:IPR009027 InterPro:IPR020069
InterPro:IPR020070 PANTHER:PTHR21368 Pfam:PF03948 SUPFAM:SSF55658
SUPFAM:SSF55653 TIGRFAMs:TIGR00158 PROSITE:PS00651
RefSeq:YP_504777.1 ProteinModelPortal:Q2GLH4 STRING:Q2GLH4
GeneID:3930321 KEGG:aph:APH_0153 PATRIC:20948874
HOGENOM:HOG000040335 OMA:HYRNIFF ProtClustDB:PRK00137
BioCyc:APHA212042:GHPM-188-MONOMER Uniprot:Q2GLH4
Length = 205
Score = 133 (51.9 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 42/134 (31%), Positives = 57/134 (42%)
Query: 174 MQVILLKDIPNLGKLGEIIKVKNGYARNFLIPKNKARHATKFVIKEFEEKRIKLEKTAFT 233
+ VIL I LGK GE+ KV+ GYAR +L+ KA ATK ++ EK +E+ +
Sbjct: 2 LSVILKSSIRGLGKAGEVAKVRPGYAR-YLLADGKAMRATKRNMELLAEKLAVMEEESNQ 60
Query: 234 IFLNAXXXXXXXXXXXXXXXXXSGVDGKLFGSVTNSDXXXXXXXXXXXXXXXXXXXPNNS 293
A + DGKLFGSV D +
Sbjct: 61 KLREAEKVAEALAGECFVMIRQASDDGKLFGSVAVRDVAKLLGSLGYNVQPKEVFF-SEV 119
Query: 294 IKKIGNYYIDILLH 307
IK+IG Y I++ LH
Sbjct: 120 IKRIGEYEINVELH 133
>TIGR_CMR|NSE_0060 [details] [associations]
symbol:NSE_0060 "ribosomal protein L9" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
HAMAP:MF_00503 InterPro:IPR000244 InterPro:IPR020594 Pfam:PF01281
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
EMBL:CP000237 GenomeReviews:CP000237_GR eggNOG:COG0359
HOGENOM:HOG000040337 KO:K02939 OMA:GKQIFGS Gene3D:3.10.430.100
Gene3D:3.40.5.10 InterPro:IPR009027 InterPro:IPR020069
InterPro:IPR020070 PANTHER:PTHR21368 Pfam:PF03948 SUPFAM:SSF55658
SUPFAM:SSF55653 TIGRFAMs:TIGR00158 PROSITE:PS00651
RefSeq:YP_505961.1 ProteinModelPortal:Q2GEY5 STRING:Q2GEY5
GeneID:3931413 KEGG:nse:NSE_0060 PATRIC:22680235
ProtClustDB:CLSK2527628 BioCyc:NSEN222891:GHFU-97-MONOMER
Uniprot:Q2GEY5
Length = 160
Score = 119 (46.9 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 36/135 (26%), Positives = 52/135 (38%)
Query: 174 MQVILLKDIPNLGKLGEIIKVKNGYARNFLIPKNKARHATKFVIKEFEEKRIKLEKTAFT 233
M VIL + LG +G+++KVK G+ARN+LIP KA AT+ + E + KL
Sbjct: 1 MLVILKETARKLGNVGDVLKVKKGFARNYLIPSGKAVRATRANLAILENSKEKLAAQQAA 60
Query: 234 IFLNAXXXXXXXXXXXXXXXXXSGVDGKLFGSVTNSDXXXXXXXXXXXXXXXXXXXPNNS 293
A G LFG+V+
Sbjct: 61 ELETASELAKSFTEIDVLPIYAQAERGVLFGAVSAKQVVAELSKKGIEITTKNVVL-GAP 119
Query: 294 IKKIGNYYIDILLHN 308
IK +G + + I LH+
Sbjct: 120 IKALGEHEVRIFLHS 134
>TIGR_CMR|CJE_1215 [details] [associations]
symbol:CJE_1215 "ribosomal protein S18" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] HAMAP:MF_00270 InterPro:IPR001648 Pfam:PF01084
PRINTS:PR00974 ProDom:PD002239 PROSITE:PS00057 GO:GO:0006412
GO:GO:0005840 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0003735
GO:GO:0019843 Gene3D:4.10.640.10 PANTHER:PTHR13479 SUPFAM:SSF46911
TIGRFAMs:TIGR00165 HOGENOM:HOG000218466 eggNOG:COG0238 KO:K02963
ProtClustDB:PRK00391 OMA:MARPFFR RefSeq:YP_179203.1
ProteinModelPortal:Q5HU32 STRING:Q5HU32 GeneID:3231722
KEGG:cjr:CJE1215 PATRIC:20044226
BioCyc:CJEJ195099:GJC0-1241-MONOMER Uniprot:Q5HU32
Length = 86
Score = 118 (46.6 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 27/73 (36%), Positives = 39/73 (53%)
Query: 120 KKFCRFTVMNIKQIDYKDIETLKDFIQENGKIMAARLTGTCSHYQRQITFIRKNMQVILL 179
+K+C++T ++ IDYKD LK + E KIM RLTGT YQ + K + + L
Sbjct: 9 RKYCKYTEAKVEFIDYKDTAMLKHALSERFKIMPRRLTGTSKKYQEMVEVAIKRARHVAL 68
Query: 180 KDIPNLGKLGEII 192
IP + E+I
Sbjct: 69 --IPYIVDRKEVI 79
>TIGR_CMR|CHY_0035 [details] [associations]
symbol:CHY_0035 "ribosomal protein S6" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] HAMAP:MF_00360 InterPro:IPR000529 InterPro:IPR020814
Pfam:PF01250 PROSITE:PS01048 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 Gene3D:3.30.70.60 InterPro:IPR014717 SUPFAM:SSF54995
eggNOG:COG0360 KO:K02990 ProtClustDB:PRK00453 TIGRFAMs:TIGR00166
HOGENOM:HOG000040440 OMA:MVESKDW RefSeq:YP_358907.1
ProteinModelPortal:Q3AG27 STRING:Q3AG27 GeneID:3726848
KEGG:chy:CHY_0035 PATRIC:21273267 BioCyc:CHYD246194:GJCN-35-MONOMER
Uniprot:Q3AG27
Length = 96
Score = 115 (45.5 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 20/74 (27%), Positives = 41/74 (55%)
Query: 1 MIERYXXXXXXXXXXXHRLEDWGRRSLAYQIKKVIKAHYICFNIEINKKTLLEIETSFRF 60
+IER+ +++ WG+R AY+IKK+ + +Y+ N + +T E++ R
Sbjct: 23 IIERFKGMIEQEGGEVTKIDRWGKRRFAYEIKKLREGYYVVMNFKAKAETAQELDRLLRI 82
Query: 61 NDAILRYLTIKTKK 74
+D ++R++ I+ K
Sbjct: 83 SDDVVRHIVIREDK 96
>TIGR_CMR|DET_1044 [details] [associations]
symbol:DET_1044 "ribosomal protein S18" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
HAMAP:MF_00270 InterPro:IPR001648 InterPro:IPR018275 Pfam:PF01084
PRINTS:PR00974 ProDom:PD002239 PROSITE:PS00057 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0019843 Gene3D:4.10.640.10 PANTHER:PTHR13479 SUPFAM:SSF46911
TIGRFAMs:TIGR00165 eggNOG:COG0238 KO:K02963 RefSeq:YP_181760.1
ProteinModelPortal:Q3Z7N9 STRING:Q3Z7N9 GeneID:3229654
KEGG:det:DET1044 PATRIC:21609137 HOGENOM:HOG000010170 OMA:FSPMREL
ProtClustDB:PRK13400 BioCyc:DETH243164:GJNF-1045-MONOMER
Uniprot:Q3Z7N9
Length = 147
Score = 115 (45.5 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 23/61 (37%), Positives = 33/61 (54%)
Query: 119 RKKFCRFTVMNIKQIDYKDIETLKDFIQENGKIMAARLTGTCSHYQRQITFIRKNMQVIL 178
++K C F + +IDYKD L +I + GKI R TGTC+ +QR + K + I
Sbjct: 21 KRKICSFCAEKVSRIDYKDSAKLARYISDRGKIEPRRRTGTCARHQRALANAIKRARFIA 80
Query: 179 L 179
L
Sbjct: 81 L 81
>GENEDB_PFALCIPARUM|PFB0750w [details] [associations]
symbol:PFB0750w "vacuolar protein-sorting
protein VPS45, putative" species:5833 "Plasmodium falciparum"
[GO:0006886 "intracellular protein transport" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR001619 Pfam:PF00995
PIRSF:PIRSF005715 PANTHER:PTHR11679 GO:GO:0006904 EMBL:AE001362
SUPFAM:SSF56815 OMA:HKKVESI PIR:D71607 RefSeq:XP_001349668.1
ProteinModelPortal:O96243 EnsemblProtists:PFB0750w:mRNA
GeneID:812750 KEGG:pfa:PFB0750w EuPathDB:PlasmoDB:PF3D7_0216400
HOGENOM:HOG000284318 ProtClustDB:CLSZ2432527 Uniprot:O96243
Length = 722
Score = 103 (41.3 bits), Expect = 2.1e-05, Sum P(4) = 2.1e-05
Identities = 46/156 (29%), Positives = 77/156 (49%)
Query: 639 SSILNNTYIWKK-IFLDYKINNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNV 697
S I +++YI +K IFL N+ NI E++YNN KK+N +
Sbjct: 43 SLIFSHSYILEKEIFLTLNFNDK----NIFEDIYNNNNDKKENFDF-------------M 85
Query: 698 NFCFENKKLEELIFLYRAR--NFIETLSYKELKR--WKKYRISRFYNKKNNLYNINMFYL 753
N+ +N K ++IFL R N + +S ELK+ + +Y I F N N++Y +
Sbjct: 86 NYKIKNLKHLKVIFLLRPTYTNILRLMS--ELKKPLFSEYYIF-FTNTINDIYIEKLAKA 142
Query: 754 EIESLLKKANEH--DTKILNALLMYGKIDGSSCIYR 787
+ ++K E+ DT +L+ L + ID +S +Y+
Sbjct: 143 DEFDVIKNIIEYYIDTYVLHDYLFHLNIDYTSFLYK 178
Score = 65 (27.9 bits), Expect = 2.1e-05, Sum P(4) = 2.1e-05
Identities = 30/100 (30%), Positives = 44/100 (44%)
Query: 1265 GNTLIKHAKPLKIIHSITNKAKFNEISKLVEKWKPNTVKKMELKKIINT-KHQTIVAYTN 1323
GN + KH L I K + IS+L + K K++I+T K+ T YTN
Sbjct: 493 GN-VTKHVNILHKFSDIVQKRQLFYISELEQSIACYHTKNDHFKQVIDTIKNYT---YTN 548
Query: 1324 YGVKFRNGIFYTKSFLVSPEIDPIFWSINKYNFLTKKDFI 1363
Y V R + Y+ + I+ I + K N +KD I
Sbjct: 549 YDV-LRLSLLYSLKYADEQHINVIKNELAKRNI--QKDQI 585
Score = 56 (24.8 bits), Expect = 2.1e-05, Sum P(4) = 2.1e-05
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 1353 KYNFLTKKD-FIHISKFNPSVVILGTGNIQHFIHPKLTYILTQKNIGIECMNNQAACRTY 1411
KYN L K+ F++++K + I GT N+ +H Y L + I + +N Q T
Sbjct: 600 KYNQLFKEQTFLNLAKTTITRTIKGTSNV-FTLHKSYLYYLLEDIIKYK-INTQLYTTT- 656
Query: 1412 NIL 1414
N+L
Sbjct: 657 NLL 659
Score = 56 (24.8 bits), Expect = 2.1e-05, Sum P(4) = 2.1e-05
Identities = 25/84 (29%), Positives = 40/84 (47%)
Query: 783 SCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNY--RATYIACIFDAKGKNFRNIL 840
SC Y FY + DNF G L +K +Y+ + T + I D + F +I
Sbjct: 433 SCNYDDFY---NEHLFDNF--GDLGQAVKNYVDIYQEETSKKTNLESIDDIQ--KFIDI- 484
Query: 841 YPSYKATRKKMPYNLILQINLIHQ 864
YP+YK K+ N+ +N++H+
Sbjct: 485 YPNYK----KLSGNVTKHVNILHK 504
>UNIPROTKB|O96243 [details] [associations]
symbol:PFB0750w "Vacuolar protein-sorting protein VPS45,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR001619 Pfam:PF00995 PIRSF:PIRSF005715
PANTHER:PTHR11679 GO:GO:0006904 EMBL:AE001362 SUPFAM:SSF56815
OMA:HKKVESI PIR:D71607 RefSeq:XP_001349668.1
ProteinModelPortal:O96243 EnsemblProtists:PFB0750w:mRNA
GeneID:812750 KEGG:pfa:PFB0750w EuPathDB:PlasmoDB:PF3D7_0216400
HOGENOM:HOG000284318 ProtClustDB:CLSZ2432527 Uniprot:O96243
Length = 722
Score = 103 (41.3 bits), Expect = 2.1e-05, Sum P(4) = 2.1e-05
Identities = 46/156 (29%), Positives = 77/156 (49%)
Query: 639 SSILNNTYIWKK-IFLDYKINNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNV 697
S I +++YI +K IFL N+ NI E++YNN KK+N +
Sbjct: 43 SLIFSHSYILEKEIFLTLNFNDK----NIFEDIYNNNNDKKENFDF-------------M 85
Query: 698 NFCFENKKLEELIFLYRAR--NFIETLSYKELKR--WKKYRISRFYNKKNNLYNINMFYL 753
N+ +N K ++IFL R N + +S ELK+ + +Y I F N N++Y +
Sbjct: 86 NYKIKNLKHLKVIFLLRPTYTNILRLMS--ELKKPLFSEYYIF-FTNTINDIYIEKLAKA 142
Query: 754 EIESLLKKANEH--DTKILNALLMYGKIDGSSCIYR 787
+ ++K E+ DT +L+ L + ID +S +Y+
Sbjct: 143 DEFDVIKNIIEYYIDTYVLHDYLFHLNIDYTSFLYK 178
Score = 65 (27.9 bits), Expect = 2.1e-05, Sum P(4) = 2.1e-05
Identities = 30/100 (30%), Positives = 44/100 (44%)
Query: 1265 GNTLIKHAKPLKIIHSITNKAKFNEISKLVEKWKPNTVKKMELKKIINT-KHQTIVAYTN 1323
GN + KH L I K + IS+L + K K++I+T K+ T YTN
Sbjct: 493 GN-VTKHVNILHKFSDIVQKRQLFYISELEQSIACYHTKNDHFKQVIDTIKNYT---YTN 548
Query: 1324 YGVKFRNGIFYTKSFLVSPEIDPIFWSINKYNFLTKKDFI 1363
Y V R + Y+ + I+ I + K N +KD I
Sbjct: 549 YDV-LRLSLLYSLKYADEQHINVIKNELAKRNI--QKDQI 585
Score = 56 (24.8 bits), Expect = 2.1e-05, Sum P(4) = 2.1e-05
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 1353 KYNFLTKKD-FIHISKFNPSVVILGTGNIQHFIHPKLTYILTQKNIGIECMNNQAACRTY 1411
KYN L K+ F++++K + I GT N+ +H Y L + I + +N Q T
Sbjct: 600 KYNQLFKEQTFLNLAKTTITRTIKGTSNV-FTLHKSYLYYLLEDIIKYK-INTQLYTTT- 656
Query: 1412 NIL 1414
N+L
Sbjct: 657 NLL 659
Score = 56 (24.8 bits), Expect = 2.1e-05, Sum P(4) = 2.1e-05
Identities = 25/84 (29%), Positives = 40/84 (47%)
Query: 783 SCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNY--RATYIACIFDAKGKNFRNIL 840
SC Y FY + DNF G L +K +Y+ + T + I D + F +I
Sbjct: 433 SCNYDDFY---NEHLFDNF--GDLGQAVKNYVDIYQEETSKKTNLESIDDIQ--KFIDI- 484
Query: 841 YPSYKATRKKMPYNLILQINLIHQ 864
YP+YK K+ N+ +N++H+
Sbjct: 485 YPNYK----KLSGNVTKHVNILHK 504
>DICTYBASE|DDB_G0267464 [details] [associations]
symbol:polA "mitochondrial DNA polymerase A"
species:44689 "Dictyostelium discoideum" [GO:0008409 "5'-3'
exonuclease activity" evidence=IEA] [GO:0008408 "3'-5' exonuclease
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421
InterPro:IPR002562 InterPro:IPR008918 InterPro:IPR012337
InterPro:IPR020045 InterPro:IPR020046 Pfam:PF00476 Pfam:PF01367
Pfam:PF01612 Pfam:PF02739 PRINTS:PR00868 SMART:SM00279
SMART:SM00475 SMART:SM00482 dictyBase:DDB_G0267464
GenomeReviews:CM000150_GR GO:GO:0003677 GO:GO:0006260
EMBL:AAFI02000003 GO:GO:0005622 SUPFAM:SSF53098 GO:GO:0008408
GO:GO:0003887 GO:GO:0008409 eggNOG:COG0258 SUPFAM:SSF47807
KO:K02335 HSSP:P19821 EMBL:AY170439 RefSeq:XP_647557.1
ProteinModelPortal:Q8I7W9 STRING:Q8I7W9 EnsemblProtists:DDB0191131
GeneID:8616365 KEGG:ddi:DDB_G0267464 OMA:TATKWIQ Uniprot:Q8I7W9
Length = 1369
Score = 171 (65.3 bits), Expect = 2.5e-05, Sum P(4) = 2.5e-05
Identities = 46/196 (23%), Positives = 92/196 (46%)
Query: 877 KGVEADDVIGTLAKQAVTKHNLKVIISTNDKDMAQLVSNKIALINNNK--IHDRTTIISR 934
K +E +D ++ + +V I T+DKD+ QLV++ +++ + + + D+ +I +
Sbjct: 397 KFIEGNDQYDPTHPESNRFNGSQVTIVTDDKDIYQLVNDNVSVYSTRRGSMVDKQGVIDK 456
Query: 935 FGVSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLEXXXXXXXXXXXXXXXX 994
FG P K V + SLIGD DN+PG+ +IG KTA ++ ++ +L
Sbjct: 457 FGFEPNKFVTFQSLIGDKVDNIPGIPRIGEKTATDIIKKFGNLNSIIENIDQLPQKFIEP 516
Query: 995 LRFALNWLPXXXXXXXXXXDCDLTKNIVSIPESLILQPKDEKLLMQLFNKYNIP-LKNHD 1053
+R +++ L + + N+ + + +P D +KYN +K+
Sbjct: 517 IRSSIDQLRISYQLAKLNDNVSINLNL----DDIKYKPIDRTKFYNFLDKYNFTSIKSSV 572
Query: 1054 DNIS---DENYDIDCS 1066
+ ++ +N +I S
Sbjct: 573 EKLNKLFSDNQEITTS 588
Score = 168 (64.2 bits), Expect = 9.5e-05, Sum P(4) = 9.5e-05
Identities = 52/184 (28%), Positives = 89/184 (48%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRA--TYIACIFDAKG-KN 835
IDG+ Y+A P + N + V LYG ++ + K+ + + + C FD KG +
Sbjct: 277 IDGTLMAYKANATTPSLTN-EGMNVNVLYGFMRSMLKVIDELKPIDSIVVC-FDPKGGSS 334
Query: 836 FRNILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTK 895
FR LYP YK+ R P L+ Q+ LI ++ +I + G E DD++ T +K A +
Sbjct: 335 FRRDLYPEYKSNRPPTPPELLQQLLLIPEVTDSINVAFTKVDGYECDDLLATYSKLATQE 394
Query: 896 HNLKVIISTNDKDMAQLVSNK-----IALINNNK-----IHDRTTIIS-RFG--VSPEKI 942
N K I + D SN+ + ++ ++K ++D ++ S R G V + +
Sbjct: 395 GN-KFIEGNDQYDPTHPESNRFNGSQVTIVTDDKDIYQLVNDNVSVYSTRRGSMVDKQGV 453
Query: 943 VDYF 946
+D F
Sbjct: 454 IDKF 457
Score = 41 (19.5 bits), Expect = 2.5e-05, Sum P(4) = 2.5e-05
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 743 NNLYNINMFYLEIESLLKKANEHDTKILNALLMYGKIDGSSCIYRAFY 790
N N+N+ Y + S+LK +E K ++++++ G S R Y
Sbjct: 295 NEGMNVNVLYGFMRSMLKVIDE--LKPIDSIVVCFDPKGGSSFRRDLY 340
Score = 40 (19.1 bits), Expect = 2.5e-05, Sum P(4) = 2.5e-05
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 48 KKTLLEIETSFRFND 62
KKT+ +I +SF ND
Sbjct: 135 KKTIQQIPSSFVLND 149
Score = 38 (18.4 bits), Expect = 9.5e-05, Sum P(4) = 9.5e-05
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 1035 EKLLMQLFNKYNIPLKNHDDNISDENYDIDCSDAKSL 1071
E L +L NK +P+K D D + KS+
Sbjct: 772 EALSKELLNKPKVPIK---DLFGTRKIKADGEEGKSI 805
Score = 37 (18.1 bits), Expect = 2.5e-05, Sum P(4) = 2.5e-05
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 1214 GAGQLEEEIMNNHWLIVDANS--EVIFNVPCEQRFFAA 1249
G G + + N W VD++S E+ P + ++ +A
Sbjct: 975 GIGMESKSLTTNGWPSVDSSSLRELAGKNPIDGKYGSA 1012
>TIGR_CMR|NSE_0062 [details] [associations]
symbol:NSE_0062 "ribosomal protein S6" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
HAMAP:MF_00360 InterPro:IPR000529 InterPro:IPR020814 Pfam:PF01250
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
EMBL:CP000237 GenomeReviews:CP000237_GR Gene3D:3.30.70.60
InterPro:IPR014717 SUPFAM:SSF54995 eggNOG:COG0360 KO:K02990
OMA:PSHIYEC TIGRFAMs:TIGR00166 RefSeq:YP_505963.1
ProteinModelPortal:Q2GEY3 STRING:Q2GEY3 GeneID:3931902
KEGG:nse:NSE_0062 PATRIC:22680239 HOGENOM:HOG000127370
ProtClustDB:CLSK2527701 BioCyc:NSEN222891:GHFU-99-MONOMER
Uniprot:Q2GEY3
Length = 114
Score = 112 (44.5 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 18 RLEDWGRRSLAYQIKKVIKAHYICFNIEINKKTLLEIETSFRFNDAILRYLTIKTKKVET 77
R E+WG +LAY++K KA+Y F I L + E ++ND +LRYL + ++ +
Sbjct: 41 RQENWGSLALAYRVKNHTKANYFMFVISAEPLALQKFEAKLKYNDLVLRYLLQRKREFKA 100
Query: 78 EESS 81
+ +
Sbjct: 101 PDGA 104
>UNIPROTKB|Q2GGV2 [details] [associations]
symbol:ECH_0516 "Putative uncharacterized protein"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
EMBL:CP000236 GenomeReviews:CP000236_GR KO:K09008
Gene3D:3.40.1230.10 InterPro:IPR007523 Pfam:PF04430 SUPFAM:SSF64076
eggNOG:COG3737 HOGENOM:HOG000261143 PANTHER:PTHR21192
RefSeq:YP_507331.1 ProteinModelPortal:Q2GGV2 STRING:Q2GGV2
GeneID:3927210 KEGG:ech:ECH_0516 PATRIC:20576500 OMA:DINSKEH
ProtClustDB:CLSK749299 BioCyc:ECHA205920:GJNR-518-MONOMER
Uniprot:Q2GGV2
Length = 120
Score = 111 (44.1 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 34/122 (27%), Positives = 54/122 (44%)
Query: 1305 MELKKIINTKHQTIVAYTNYGVKFRNGIFYTKSFLVSPEIDPIFWSINKYNFLTKKDFIH 1364
M++ II I Y G F N Y S +V P +N +N ++ I
Sbjct: 1 MDITPIICANKNVITGYGT-GEFFINDNVYLGSHIVFPNKIISCLDLNIFNL---ENIIE 56
Query: 1365 ISKFNPSVVILGTGNIQHFIHPKLTYILTQKNIGIECMNNQAACRTYNILVSDDIKAMLA 1424
+ +V++GTG F+ ++ ++ IE M+ A CRTYN+L+ +D A
Sbjct: 57 LLDETLDIVLIGTGKNHIFLPNEVKNNFLKRGFNIEYMSTGAVCRTYNVLLYEDRNVCAA 116
Query: 1425 LI 1426
LI
Sbjct: 117 LI 118
>TIGR_CMR|ECH_0516 [details] [associations]
symbol:ECH_0516 "conserved hypothetical protein"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
EMBL:CP000236 GenomeReviews:CP000236_GR KO:K09008
Gene3D:3.40.1230.10 InterPro:IPR007523 Pfam:PF04430 SUPFAM:SSF64076
eggNOG:COG3737 HOGENOM:HOG000261143 PANTHER:PTHR21192
RefSeq:YP_507331.1 ProteinModelPortal:Q2GGV2 STRING:Q2GGV2
GeneID:3927210 KEGG:ech:ECH_0516 PATRIC:20576500 OMA:DINSKEH
ProtClustDB:CLSK749299 BioCyc:ECHA205920:GJNR-518-MONOMER
Uniprot:Q2GGV2
Length = 120
Score = 111 (44.1 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 34/122 (27%), Positives = 54/122 (44%)
Query: 1305 MELKKIINTKHQTIVAYTNYGVKFRNGIFYTKSFLVSPEIDPIFWSINKYNFLTKKDFIH 1364
M++ II I Y G F N Y S +V P +N +N ++ I
Sbjct: 1 MDITPIICANKNVITGYGT-GEFFINDNVYLGSHIVFPNKIISCLDLNIFNL---ENIIE 56
Query: 1365 ISKFNPSVVILGTGNIQHFIHPKLTYILTQKNIGIECMNNQAACRTYNILVSDDIKAMLA 1424
+ +V++GTG F+ ++ ++ IE M+ A CRTYN+L+ +D A
Sbjct: 57 LLDETLDIVLIGTGKNHIFLPNEVKNNFLKRGFNIEYMSTGAVCRTYNVLLYEDRNVCAA 116
Query: 1425 LI 1426
LI
Sbjct: 117 LI 118
>UNIPROTKB|P67757 [details] [associations]
symbol:MT0043 "UPF0301 protein Rv0038/MT0043" species:1773
"Mycobacterium tuberculosis" [GO:0005886 "plasma membrane"
evidence=IDA] GO:GO:0005886 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842572 PIR:D70702
RefSeq:NP_214552.1 RefSeq:NP_334452.1 RefSeq:YP_006513352.1
ProteinModelPortal:P67757 SMR:P67757 PRIDE:P67757
EnsemblBacteria:EBMYCT00000001659 EnsemblBacteria:EBMYCT00000071342
GeneID:13316016 GeneID:887045 GeneID:922630 KEGG:mtc:MT0043
KEGG:mtu:Rv0038 KEGG:mtv:RVBD_0038 PATRIC:18121821
TubercuList:Rv0038 eggNOG:COG1678 HOGENOM:HOG000281194 KO:K07735
OMA:LRIFAGY ProtClustDB:PRK00228 HAMAP:MF_00758 InterPro:IPR003774
Pfam:PF02622 Uniprot:P67757
Length = 202
Score = 124 (48.7 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 43/164 (26%), Positives = 72/164 (43%)
Query: 1079 LIAMPGFSTPFFDGAVVYLCEHNSNGAFGIIINKPTDMTXXXXXXXXXXXXXXXVPNTKE 1138
L+A P F +V+Y+ EHN G G+++N+P++ +P +
Sbjct: 25 LLANTDLLEPTFRRSVIYIVEHNDGGTLGVVLNRPSE-----------TAVYNVLPQWAK 73
Query: 1139 FILEKTTKTIMFGGPIQIDRGFVLHNITNEKSPIFNSTL-NIASD---ISLTTSRDILES 1194
L KT+ GGP++ D L + P L ++A + L ++L +
Sbjct: 74 --LAAKPKTMFIGGPVKRDAALCLAVLRVGADPEGVPGLRHVAGRLVMVDLDADPEVLAA 131
Query: 1195 FSRGDGPSQLLISLGCSGWGAGQLEEEIMNNHWLIVDA-NSEVI 1237
G + I G SGW GQLE EI + W+++ A S+V+
Sbjct: 132 AVEG-----VRIYAGYSGWTIGQLEGEIERDDWIVLSALPSDVL 170
>TIGR_CMR|BA_5723 [details] [associations]
symbol:BA_5723 "ribosomal protein S6" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
HAMAP:MF_00360 InterPro:IPR000529 InterPro:IPR020814
InterPro:IPR020815 Pfam:PF01250 PROSITE:PS01048 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 Gene3D:3.30.70.60
InterPro:IPR014717 SUPFAM:SSF54995 eggNOG:COG0360 KO:K02990
ProtClustDB:PRK00453 TIGRFAMs:TIGR00166 RefSeq:NP_847869.1
RefSeq:YP_022409.1 RefSeq:YP_031564.1 PDB:3R3T PDBsum:3R3T
ProteinModelPortal:Q81JI2 DNASU:1085492
EnsemblBacteria:EBBACT00000011912 EnsemblBacteria:EBBACT00000018310
EnsemblBacteria:EBBACT00000024101 GeneID:1085492 GeneID:2815999
GeneID:2848522 KEGG:ban:BA_5723 KEGG:bar:GBAA_5723 KEGG:bat:BAS5327
HOGENOM:HOG000040440 OMA:RKYEVMY
BioCyc:BANT260799:GJAJ-5404-MONOMER
BioCyc:BANT261594:GJ7F-5580-MONOMER Uniprot:Q81JI2
Length = 96
Score = 106 (42.4 bits), Expect = 0.00015, P = 0.00015
Identities = 18/74 (24%), Positives = 39/74 (52%)
Query: 1 MIERYXXXXXXXXXXXHRLEDWGRRSLAYQIKKVIKAHYICFNIEINKKTLLEIETSFRF 60
++ER+ ++WG+R LAY+I + + Y+ N+ N + + E + +
Sbjct: 22 LVERFAGVLTNNGAEIINTKEWGKRRLAYEINDLREGFYMILNVNANAEAINEFDRLAKI 81
Query: 61 NDAILRYLTIKTKK 74
N+ ILR++ +K ++
Sbjct: 82 NEDILRHIVVKEEE 95
>UNIPROTKB|Q5LR14 [details] [associations]
symbol:SPO2318 "Uncharacterized protein" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] EMBL:CP000031
GenomeReviews:CP000031_GR KO:K09008 Gene3D:3.40.1230.10
InterPro:IPR007523 Pfam:PF04430 SUPFAM:SSF64076
HOGENOM:HOG000261143 PANTHER:PTHR21192 RefSeq:YP_167541.1
ProteinModelPortal:Q5LR14 GeneID:3194592 KEGG:sil:SPO2318
PATRIC:23377999 OMA:RFADMSH ProtClustDB:CLSK933835 Uniprot:Q5LR14
Length = 117
Score = 104 (41.7 bits), Expect = 0.00025, P = 0.00025
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 1372 VVILGTG-NIQHFIHPKLTYILTQKNIGIECMNNQAACRTYNILVSDDIKAMLALI 1426
V+ +GTG + H P L + L Q G+E M + AACRTYN+L+ + + LA +
Sbjct: 61 VLFIGTGAEVAHIPQP-LRHSLEQAGFGVEAMTSPAACRTYNVLLGEGRRIALAAL 115
>TIGR_CMR|SPO_2318 [details] [associations]
symbol:SPO_2318 "conserved hypothetical protein"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
EMBL:CP000031 GenomeReviews:CP000031_GR KO:K09008
Gene3D:3.40.1230.10 InterPro:IPR007523 Pfam:PF04430 SUPFAM:SSF64076
HOGENOM:HOG000261143 PANTHER:PTHR21192 RefSeq:YP_167541.1
ProteinModelPortal:Q5LR14 GeneID:3194592 KEGG:sil:SPO2318
PATRIC:23377999 OMA:RFADMSH ProtClustDB:CLSK933835 Uniprot:Q5LR14
Length = 117
Score = 104 (41.7 bits), Expect = 0.00025, P = 0.00025
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 1372 VVILGTG-NIQHFIHPKLTYILTQKNIGIECMNNQAACRTYNILVSDDIKAMLALI 1426
V+ +GTG + H P L + L Q G+E M + AACRTYN+L+ + + LA +
Sbjct: 61 VLFIGTGAEVAHIPQP-LRHSLEQAGFGVEAMTSPAACRTYNVLLGEGRRIALAAL 115
>TAIR|locus:2086112 [details] [associations]
symbol:RFC3 "REGULATOR OF FATTY-ACID COMPOSITION 3"
species:3702 "Arabidopsis thaliana" [GO:0003735 "structural
constituent of ribosome" evidence=IEA;ISS] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=ISS] [GO:0019243 "methylglyoxal catabolic
process to D-lactate" evidence=RCA] HAMAP:MF_00360
InterPro:IPR000529 InterPro:IPR020814 Pfam:PF01250 EMBL:CP002686
GO:GO:0005840 GO:GO:0003746 GO:GO:0003735 GO:GO:0019843
Gene3D:3.30.70.60 InterPro:IPR014717 SUPFAM:SSF54995
TIGRFAMs:TIGR00166 EMBL:AY074580 EMBL:AY101540 EMBL:AB057424
IPI:IPI00525662 RefSeq:NP_566568.1 UniGene:At.48673
UniGene:At.71146 ProteinModelPortal:Q948R9 SMR:Q948R9 STRING:Q948R9
PRIDE:Q948R9 EnsemblPlants:AT3G17170.1 GeneID:820974
KEGG:ath:AT3G17170 TAIR:At3g17170 InParanoid:Q948R9 OMA:IRHLVMK
PhylomeDB:Q948R9 ProtClustDB:CLSN2688474 Genevestigator:Q948R9
Uniprot:Q948R9
Length = 314
Score = 124 (48.7 bits), Expect = 0.00027, P = 0.00027
Identities = 25/62 (40%), Positives = 36/62 (58%)
Query: 18 RLEDWGRRSLAYQIKKVIKAHYICFNIEINKKTLLEIETSFRFNDAILRYLTIKTKKVET 77
R DWG R LAY+I+K AHYI N EI K L E + ++ ++R+L +K + T
Sbjct: 157 RFSDWGMRRLAYKIQKAENAHYILMNFEIEAKYLNEFKGLLDSDERVIRHLVMKRDEAIT 216
Query: 78 EE 79
E+
Sbjct: 217 ED 218
>DICTYBASE|DDB_G0284147 [details] [associations]
symbol:DDB_G0284147 species:44689 "Dictyostelium
discoideum" [GO:0007067 "mitosis" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
InterPro:IPR008685 Pfam:PF05859 dictyBase:DDB_G0284147
GO:GO:0005634 GO:GO:0000775 GO:GO:0007067 EMBL:AAFI02000063
RefSeq:XP_638733.1 EnsemblProtists:DDB0218571 GeneID:8624403
KEGG:ddi:DDB_G0284147 InParanoid:Q54Q64 Uniprot:Q54Q64
Length = 315
Score = 120 (47.3 bits), Expect = 0.00075, P = 0.00075
Identities = 73/288 (25%), Positives = 125/288 (43%)
Query: 501 NNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI---CI--HP 555
NNN N L + ++ E + P+ +I + S H Y + C+ HP
Sbjct: 34 NNNNNNNNEDSLLYDENHLKREADFFKFHPYSFIDDVHESTHDYCADSADFIESCLLGHP 93
Query: 556 M-NKNI----LI------TWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDIPISMIHLN 604
+ N N LI W LL ++ ++NK +YL + ED+ ++
Sbjct: 94 LFNNNQEFKQLIQEGTNNVWELL---EQIFTKNLNKYEEYLLSSILNIPEDL---ILPDE 147
Query: 605 RSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLEL 664
+ PI I N ++N + D N + N S + N + I K D ++N L +
Sbjct: 148 QQPINIFN----NNNNRNKNNSDNNNSHSNNNNNSKLYNKSNIIDKEMEDLRVNIQKL-I 202
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N ++++ N + K ++KL L+S+ N N ++K +E + + + R +E +Y
Sbjct: 203 NENDQIKNKIQTTKQDIKL--LQSI------NTNLKTDSKNIESIADINQKRKVLE-YNY 253
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEI-ESLLKKANEHDTKILN 771
+ LK ++S N NN N N L I +SLL K N + K +N
Sbjct: 254 QVLKS----KLSNTINSDNNNNNNNNNNLCINKSLLDKMNSLNLKTVN 297
>TIGR_CMR|ECH_0308 [details] [associations]
symbol:ECH_0308 "ribosomal protein S6" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
HAMAP:MF_00360 InterPro:IPR000529 InterPro:IPR020814 Pfam:PF01250
PROSITE:PS01048 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
Gene3D:3.30.70.60 InterPro:IPR014717 SUPFAM:SSF54995 eggNOG:COG0360
HOGENOM:HOG000040439 KO:K02990 ProtClustDB:PRK00453
TIGRFAMs:TIGR00166 RefSeq:YP_507129.1 ProteinModelPortal:Q2GHF4
STRING:Q2GHF4 GeneID:3927658 KEGG:ech:ECH_0308 PATRIC:20576121
OMA:LMNIECN BioCyc:ECHA205920:GJNR-308-MONOMER Uniprot:Q2GHF4
Length = 109
Score = 99 (39.9 bits), Expect = 0.00085, P = 0.00085
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 18 RLEDWGRRSLAYQIKKVIKAHYICFNIEINKKTLLEIETSFRFNDAILRYLTIKTKKVET 77
+ E WG AY I K+ K HY I+ ++ E + R N+ ILR+L +K K+
Sbjct: 39 KYEYWGLLDFAYTIDKMNKGHYCMIYIKATPSSMDEFKRKVRLNEDILRFLCLKKDKLPK 98
Query: 78 EESSFLRFIQ 87
+S ++ Q
Sbjct: 99 GDSLMIQASQ 108
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.140 0.420 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1428 1324 0.00085 124 3 11 22 0.49 33
39 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 104
No. of states in DFA: 633 (67 KB)
Total size of DFA: 583 KB (2260 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 123.50u 0.11s 123.61t Elapsed: 00:01:09
Total cpu time: 123.52u 0.11s 123.63t Elapsed: 00:01:10
Start: Thu Aug 15 14:41:00 2013 End: Thu Aug 15 14:42:10 2013
WARNINGS ISSUED: 1