RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2882
(1428 letters)
>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12
(Escherichia coli K-12) [TaxId: 83333]}
Length = 467
Score = 233 bits (595), Expect = 2e-67
Identities = 170/472 (36%), Positives = 258/472 (54%), Gaps = 12/472 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 2 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 62 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 122 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 182 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 241
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLC--FKKNSFKEDIPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L +P+ ++H+N+ P+
Sbjct: 242 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 301
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
+ L R + N+K IF + + N+D
Sbjct: 302 LA-QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTP--SDNVDA 358
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
+LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y E +
Sbjct: 359 QLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQ 418
Query: 729 RWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK--ILNALLMYGK 778
RW ++R F + + + E++ L+++ + K +L AL Y
Sbjct: 419 RWLEHRRQVFTPE-----FLQGYADELQMLVQQYADDKEKVALLKALWQYAD 465
>d2hafa1 d.310.1.1 (A:15-192) Hypothetical protein VC0467 {Vibrio
cholerae [TaxId: 666]}
Length = 178
Score = 152 bits (385), Expect = 6e-43
Identities = 73/185 (39%), Positives = 114/185 (61%), Gaps = 9/185 (4%)
Query: 1073 NLTNHFLIAMPGFSTPFFDGAVVYLCEHNSNGAFGIIINKPTDMTINILLDNDSNLKLKL 1132
NLTNHFL+AMP P+F +V+Y+CEHN +GA G++IN P D+T+ +L ++ +
Sbjct: 3 NLTNHFLVAMPSMKDPYFKRSVIYICEHNQDGAMGLMINAPIDITVGGMLK-----QVDI 57
Query: 1133 VPNTKEFILEKTTKTIMFGGPIQIDRGFVLHNITNEKSPIFNSTLNIASDISLTTSRDIL 1192
P + E K + GGP+ DRGF+LH + + S++ + DI++TTS+DIL
Sbjct: 58 EPAYPQSHQENLKKPVFNGGPVSEDRGFILHRPRDH----YESSMKMTDDIAVTTSKDIL 113
Query: 1193 ESFSRGDGPSQLLISLGCSGWGAGQLEEEIMNNHWLIVDANSEVIFNVPCEQRFFAAVKL 1252
P +++LG SGW AGQLE E+ N WL ++A+ E+IFN P +++ A++
Sbjct: 114 TVLGTEAEPEGYIVALGYSGWSAGQLEVELTENSWLTIEADPELIFNTPVHEKWQKAIQK 173
Query: 1253 LGVNP 1257
LG++P
Sbjct: 174 LGISP 178
>d2do8a1 d.310.1.1 (A:1-186) Hypothetical protein HD1794 {Haemophilus
ducreyi [TaxId: 730]}
Length = 186
Score = 152 bits (385), Expect = 8e-43
Identities = 66/189 (34%), Positives = 108/189 (57%), Gaps = 10/189 (5%)
Query: 1071 LFNLTNHFLIAMPGFSTPFFDGAVVYLCEHNSNGAFGIIINKPTDMTINILLDNDSNLKL 1130
NL F+IA P +FD V+Y+CEHN NG G+IIN PTD+++ LL
Sbjct: 2 FGNLQGKFIIATPEMDDEYFDRTVIYICEHNDNGTIGVIINTPTDLSVLELLTR------ 55
Query: 1131 KLVPNTKEFILEKTTKTIMFGGPIQIDRGFVLHNITNEKSPIFNSTLNIASDISLTTSRD 1190
+ + + + ++ GGP+ DRGF++H+ T+ + F + + DI+LTTS D
Sbjct: 56 -MDFQMAKPRIYTQDQMVLNGGPVNQDRGFIVHSKTDHE---FTHSYKVTDDITLTTSGD 111
Query: 1191 ILESFSRGDGPSQLLISLGCSGWGAGQLEEEIMNNHWLIVDANSEVIFNVPCEQRFFAAV 1250
+L+SF P + ++ LGCS W QLE+EI N+WL+ +AN++ +F R+ A
Sbjct: 112 VLDSFGTQTAPEKFIVCLGCSTWKPHQLEQEIAQNYWLLSEANNQTLFETSYLDRWVEAN 171
Query: 1251 KLLGVNPLI 1259
++LG++ ++
Sbjct: 172 EMLGISGIL 180
>d2gzoa1 d.310.1.1 (A:1-187) Hypotheical protein SO3346 {Shewanella
oneidensis [TaxId: 70863]}
Length = 187
Score = 147 bits (371), Expect = 7e-41
Identities = 68/194 (35%), Positives = 106/194 (54%), Gaps = 10/194 (5%)
Query: 1073 NLTNHFLIAMPGFSTPFFDGAVVYLCEHNSNGAFGIIINKPTDMTINILLDNDSNLKLKL 1132
+L NHFLIAMP FF+ V+YLCEH+ GA G++INKP + +N LL+
Sbjct: 3 SLQNHFLIAMPSLDDTFFERTVIYLCEHDEKGAMGLVINKPLGIEVNSLLEQMD------ 56
Query: 1133 VPNTKEFILEKTTKTIMFGGPIQIDRGFVLHNITNEKSPIFNSTLNIASDISLTTSRDIL 1192
+P + ++ GGP+ DRGFVLH P + ++ + S + LTTSRD+L
Sbjct: 57 LPTEQVSADLAMGSQVLMGGPVSQDRGFVLHTSQ----PYWANSTELGSGLMLTTSRDVL 112
Query: 1193 ESFSRGDGPSQLLISLGCSGWGAGQLEEEIMNNHWLIVDANSEVIFNVPCEQRFFAAVKL 1252
+ P + L++LG +GW QLE+E+ +N WL + A+ ++F++ E R+ A +
Sbjct: 113 TAIGSKRSPDKFLVALGYAGWSKNQLEQELADNSWLTIPADHALLFDINHEDRWQQASRS 172
Query: 1253 LGVNPLIIGIAFGN 1266
LG + G+
Sbjct: 173 LGFEAWQLSTQAGH 186
>d2ew0a1 d.310.1.1 (A:5-179) Hypothetical protein ACIAD0353
{Acinetobacter sp. ADP1 [TaxId: 62977]}
Length = 175
Score = 134 bits (338), Expect = 1e-36
Identities = 66/187 (35%), Positives = 107/187 (57%), Gaps = 15/187 (8%)
Query: 1074 LTNHFLIAMPGFSTPFFDGAVVYLCEHNSNGAFGIIINKPTDMTINILLDNDSNLKLKLV 1133
LT+ LIA P + FF V+YL H+ GA GIIIN+P + I LL++ +
Sbjct: 2 LTHRCLIAPPEMADDFFANTVIYLARHDEEGAQGIIINRPAGIQIKELLNDLDIDADNVN 61
Query: 1134 PNTKEFILEKTTKTIMFGGPIQIDRGFVLHNITNEKSPIFNSTLNIASDISLTTSRDILE 1193
P+ ++ GGP++ + GFVLH P ++S++ + ++ +TTS+DIL+
Sbjct: 62 PHE-----------VLQGGPLRPEAGFVLHTG----QPTWHSSIAVGENVCITTSKDILD 106
Query: 1194 SFSRGDGPSQLLISLGCSGWGAGQLEEEIMNNHWLIVDANSEVIFNVPCEQRFFAAVKLL 1253
+ + +G + I+LG + WG QLE+EI WLI DA+ ++IFN+P + R+ AA K +
Sbjct: 107 AIAHNEGVGRYQIALGYASWGKNQLEDEIARGDWLICDADMDLIFNLPYDDRWDAAYKKI 166
Query: 1254 GVNPLII 1260
GV+ +
Sbjct: 167 GVDRTWL 173
>d2gs5a1 d.310.1.1 (A:1-193) Hypothetical protein DIP2367
{Corynebacterium diphtheriae [TaxId: 1717]}
Length = 193
Score = 122 bits (307), Expect = 3e-32
Identities = 28/189 (14%), Positives = 61/189 (32%), Gaps = 18/189 (9%)
Query: 1074 LTNHFLIAMPGFSTPFFDGAVVYLCEHNSNGAFGIIINKPTDMTINILLDNDSNLKLKLV 1133
L+A P + F +V+ + EH+ FG+ + +D+ + ++ K
Sbjct: 16 APGMVLVAAPSMESEDFARSVILIIEHSEYATFGVNLASRSDVAVFNVIPEWVPCVTK-- 73
Query: 1134 PNTKEFILEKTTKTIMFGGPIQIDRGFVLHNI--TNEKSPIFNSTLNIASDISLTTSRDI 1191
+ + GGP+ + + + + N T + + D
Sbjct: 74 -----------PQALYIGGPLNQQSVVGVGVTAQGVDAARVDNLTRLANRLVMVNLGADP 122
Query: 1192 LESFSRGDGPSQLLISLGCSGWGAGQLEEEIMNNHWLIVDANSEVIFNVPCEQRFFAAVK 1251
S + + G + W GQL +EI N W + A + + ++
Sbjct: 123 ---EEIKPLVSGMRLFAGHAEWAPGQLAQEIENGDWFVAPALPSDVTAPGSVDVWGDVMR 179
Query: 1252 LLGVNPLII 1260
+ +
Sbjct: 180 RQPMPLPLY 188
>d1xo1a2 c.120.1.2 (A:19-185) T5 5'-exonuclease {Bacteriophage T5
[TaxId: 10726]}
Length = 167
Score = 102 bits (254), Expect = 2e-25
Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 21/169 (12%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DG++ +R + N + ++ L K+Y A + D FR
Sbjct: 7 VDGTNLGFRFKHN--------NSKKPFASSYVSTIQSLAKSYSARTTIVLGDKGKSVFRL 58
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQM----------VKAIGWPILIIKGVEADDVIGTL 888
P Y R + + + + + +P I+GVEADD+ +
Sbjct: 59 EHLPEYAGNRDEKYAQRTEEEKALDEQFFEYLKDAFELCKTTFPTFTIRGVEADDMAAYI 118
Query: 889 AKQAVTKHNLKVIISTNDKDMAQLVSNKIALIN--NNKIHDRTTIISRF 935
K V + + D D L+++K++ + + + +
Sbjct: 119 VKLIGHL-YDHVWLISTDGDWDTLLTDKVSRFSFTTRREYHLRDMYEHH 166
>d1cmwa2 c.120.1.2 (A:10-173) 5' to 3' exonuclease domain of DNA
polymerase Taq {Thermus aquaticus [TaxId: 271]}
Length = 164
Score = 97.6 bits (242), Expect = 7e-24
Identities = 55/159 (34%), Positives = 85/159 (53%), Gaps = 3/159 (1%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DG YR F+AL + PV A+YG K L K K + +FDAK +FR+
Sbjct: 8 VDGHHLAYRTFHALKGLTTSRGEPVQAVYGFAKSLLKALKEDG-DAVIVVFDAKAPSFRH 66
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
Y YKA R P + Q+ LI ++V +G L + G EADDV+ +LAK+A +
Sbjct: 67 EAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVLASLAKKAEKEG-Y 125
Query: 899 KVIISTNDKDMAQLVSNKIALIN-NNKIHDRTTIISRFG 936
+V I T DKD+ QL+S++I +++ + + ++G
Sbjct: 126 EVRILTADKDLYQLLSDRIHVLHPEGYLITPAWLWEKYG 164
>d2qalf1 d.58.14.1 (F:1-100) Ribosomal protein S6 {Escherichia coli
[TaxId: 562]}
Length = 100
Score = 92.9 bits (231), Expect = 5e-23
Identities = 44/80 (55%), Positives = 58/80 (72%)
Query: 1 MIERYKKIIISGKGKIHRLEDWGRRSLAYQIKKVIKAHYICFNIEINKKTLLEIETSFRF 60
MIERY I +GKIHRLEDWGRR LAY I K+ KAHY+ N+E ++ + E+ET+FRF
Sbjct: 21 MIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRF 80
Query: 61 NDAILRYLTIKTKKVETEES 80
NDA++R + ++TK TE S
Sbjct: 81 NDAVIRSMVMRTKHAVTEAS 100
>d1tfra2 c.120.1.2 (A:12-180) T4 RNase H {Bacteriophage T4 [TaxId:
10665]}
Length = 169
Score = 90.9 bits (225), Expect = 2e-21
Identities = 30/151 (19%), Positives = 49/151 (32%), Gaps = 16/151 (10%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALY----GTIKMLRKLYKNYRATYIACIFDAKGK 834
ID S + + + + +IK K K T I D
Sbjct: 7 IDFSQIALSTALVN--FPDKEKINLSMVRHLILNSIKFNVKKAKTLGYTKIVLCIDNAKS 64
Query: 835 NF-RNILYPSYKATRKKM--------PYNLILQINLIHQMVKAIGWPILIIKGVEADDVI 885
+ R YK R K +I ++ + + ++ I EADD I
Sbjct: 65 GYWRRDFAYYYKKNRGKAREESTWDWEGYFESSHKVIDELKAYMPYIVMDIDKYEADDHI 124
Query: 886 GTLAKQAVTKHNLKVIISTNDKDMAQLVSNK 916
L K+ + K++I ++D D QL
Sbjct: 125 AVLVKK-FSLEGHKILIISSDGDFTQLHKYP 154
>d2gycf2 d.100.1.1 (F:1-58) Ribosomal protein L9 N-domain
{Escherichia coli [TaxId: 562]}
Length = 58
Score = 85.4 bits (212), Expect = 6e-21
Identities = 32/56 (57%), Positives = 40/56 (71%)
Query: 174 MQVILLKDIPNLGKLGEIIKVKNGYARNFLIPKNKARHATKFVIKEFEEKRIKLEK 229
MQVILL + NLG LG+ + VK GYARNFL+P+ KA ATK I+ FE +R +LE
Sbjct: 1 MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEARRAELEA 56
>d1vmba_ d.58.14.1 (A:) Ribosomal protein S6 {Thermotoga maritima
[TaxId: 2336]}
Length = 107
Score = 86.7 bits (215), Expect = 8e-21
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 1 MIERYKKIIIS-GKGKIHRLEDWGRRSLAYQIKKVIKAHYICFNIEINKKTLLEIETSFR 59
++ER KKII KGKI ++E G R AY+IKK + Y + + L E+E +R
Sbjct: 23 LVERVKKIIEERVKGKIDKVERMGMRKFAYEIKKFNEGDYTVIYFRCDGQNLQELENFYR 82
Query: 60 FNDAILRYLTIKTKKVETEESSFLR 84
I+R+ T + +E +E R
Sbjct: 83 VTPEIIRWQTFRRFDLEKKERKAQR 107
>d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 228
Score = 88.5 bits (218), Expect = 4e-20
Identities = 26/218 (11%), Positives = 50/218 (22%), Gaps = 33/218 (15%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPA------------PD 358
TF++ D E GL + + P+
Sbjct: 8 ETFVFLDLEATGLPSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPE 67
Query: 359 FLPDPRACLITKITPQFCLNNGIPEYKFASIIEKIF------LKPGTISVGYNTILFDDE 412
+A IT ++ + F + + V +N +D
Sbjct: 68 RPFTAKASEITGLSSEGLARCRKA--GFDGAVVRTLQAFLSRQAGPICLVAHNGFDYDFP 125
Query: 413 ITRFMFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHL- 471
+ R + D + ++ +G G+ + L L
Sbjct: 126 LLCAELRR-----LGARLPRDTVCLDTLPALRGLDRAHSHGTRAR----GRQGYSLGSLF 176
Query: 472 SFVNNLSHKKAHDALSDVRATLGLARLIRNNNPRLFNF 509
AH A DV + + L +
Sbjct: 177 HRYFRAEPSAAHSAEGDVHTL---LLIFLHRAAELLAW 211
>d2j01i2 d.100.1.1 (I:1-55) Ribosomal protein L9 N-domain {Thermus
thermophilus [TaxId: 274]}
Length = 55
Score = 82.3 bits (204), Expect = 5e-20
Identities = 23/51 (45%), Positives = 36/51 (70%)
Query: 174 MQVILLKDIPNLGKLGEIIKVKNGYARNFLIPKNKARHATKFVIKEFEEKR 224
M+VILL+ + NLG +G+++ VK GYARN+L+P+ A AT+ +K E +
Sbjct: 1 MKVILLEPLENLGDVGQVVDVKPGYARNYLLPRGLAVLATESNLKALEARI 51
>d2fvta1 c.103.1.1 (A:1-127) Hypothetical protein RPA2829
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 127
Score = 83.7 bits (207), Expect = 1e-19
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 4/111 (3%)
Query: 1318 IVAYTNYGVKFRNGIFYTKSFLVSPEIDPIFWSINKYNFLTKKDFIHISKF--NPSVVIL 1375
I AY G F G+ + S L P+ W + K + + + +I+
Sbjct: 16 IDAYGKGGFYF-AGMSHQGSLLFLPDA-VWGWDVTKPEQIDRYSLQRVFDNANAIDTLIV 73
Query: 1376 GTGNIQHFIHPKLTYILTQKNIGIECMNNQAACRTYNILVSDDIKAMLALI 1426
GTG +L L N+ ++ M A RTYNI++ + + ALI
Sbjct: 74 GTGADVWIAPRQLREALRGVNVVLDTMQTGPAIRTYNIMIGERRRVAAALI 124
>d2fi9a1 c.103.1.1 (A:11-128) Hypothetical outer membrane protein
BH05650 {Bartonella henselae [TaxId: 38323]}
Length = 118
Score = 82.2 bits (203), Expect = 4e-19
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 5/113 (4%)
Query: 1316 QTIVAYTNYGVKFRNGIFYTKSFLVSPEIDPIFWSINKYNFLTKKDF--IHISKFNPSVV 1373
I AY N G +F + + S + P + T++D + V+
Sbjct: 6 APIDAYGNGGFRF-ADMSHRGSIICIPS-GIYGIDMTG-PVPTQEDISRVLEESDQIEVL 62
Query: 1374 ILGTGNIQHFIHPKLTYILTQKNIGIECMNNQAACRTYNILVSDDIKAMLALI 1426
++GTG + +L +L +K I + M+ AA RT+N+L+++D L
Sbjct: 63 LIGTGVELLRLPEELRVLLWEKRISSDTMSTGAAVRTFNVLLAEDRAVAALLF 115
>d1loua_ d.58.14.1 (A:) Ribosomal protein S6 {Thermus thermophilus
[TaxId: 274]}
Length = 97
Score = 81.0 bits (200), Expect = 6e-19
Identities = 14/74 (18%), Positives = 39/74 (52%)
Query: 1 MIERYKKIIISGKGKIHRLEDWGRRSLAYQIKKVIKAHYICFNIEINKKTLLEIETSFRF 60
E ++ + ++ ++E+ G R LAY I K + +++ + +E+ + + ++ R
Sbjct: 22 EKEIIQRAAENYGARVEKVEELGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLARELRI 81
Query: 61 NDAILRYLTIKTKK 74
D + R + +K+++
Sbjct: 82 RDNVRRVMVVKSQE 95
>d2hbaa1 d.100.1.1 (A:1-52) Ribosomal protein L9 N-domain {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 52
Score = 78.9 bits (195), Expect = 8e-19
Identities = 23/51 (45%), Positives = 31/51 (60%)
Query: 174 MQVILLKDIPNLGKLGEIIKVKNGYARNFLIPKNKARHATKFVIKEFEEKR 224
M+VI LKD+ +GK GEI V +GYA NFL + A AT +K E ++
Sbjct: 1 MKVIFLKDVKGMGKKGEIKNVADGYANNFLFKQGLAIEATPANLKALEAQK 51
>d2igia1 c.55.3.5 (A:1-180) Oligoribonuclease {Escherichia coli
[TaxId: 562]}
Length = 180
Score = 82.3 bits (202), Expect = 2e-18
Identities = 28/197 (14%), Positives = 54/197 (27%), Gaps = 20/197 (10%)
Query: 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLIT 369
+ +W D E GL+ RDR + A + TD LN + + + + L +
Sbjct: 4 ENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVR 63
Query: 370 KITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYERE 429
T + E L+ V E E
Sbjct: 64 THTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELE 123
Query: 430 WKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDV 489
+ D+ + + P ++ + + H A+ D+
Sbjct: 124 AYFHYRYLDVSTLKELARRWKP--------------------EILDGFTKQGTHQAMDDI 163
Query: 490 RATLGLARLIRNNNPRL 506
R ++ R + +L
Sbjct: 164 RESVAELAYYREHFIKL 180
>d2gycf1 d.99.1.1 (F:59-149) Ribosomal protein L9 C-domain
{Escherichia coli [TaxId: 562]}
Length = 91
Score = 77.1 bits (190), Expect = 1e-17
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 237 NAKKIGEEIKKL-NINIIKKSGVDGKLFGSVTNSDIVKELEKKGLKIEKNKIKLPNNSIK 295
A E+I L + I K+G +GKLFGS+ DI + G+++ K++++LPN ++
Sbjct: 6 AANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADAVTAAGVEVAKSEVRLPNGVLR 65
Query: 296 KIGNYYIDILLHNG 309
G + + +H+
Sbjct: 66 TTGEHEVSFQVHSE 79
>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 226
Score = 80.4 bits (197), Expect = 3e-17
Identities = 31/219 (14%), Positives = 60/219 (27%), Gaps = 32/219 (14%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPA--------------- 356
T ++ D E GL R + + + + P
Sbjct: 5 TLIFLDLEATGLPSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIA 64
Query: 357 PDFLPDPRACLITKITPQFCLNNGIPE--YKFASIIEKI--FLKPGTISVGYNTILFDDE 412
P P A IT ++ G A ++ V +N +D
Sbjct: 65 PGKACSPGASEITGLSKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRYDFP 124
Query: 413 ITRFMFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHL- 471
+ + R + ++ I A L + P N + S+ L +
Sbjct: 125 LLQTELARLST-------PSPLDGTFCVDSIAALKALEQA--SSPSGNGSRKSYSLGSIY 175
Query: 472 SFVNNLSHKKAHDALSDVRATLGLARLIRNNNPRLFNFI 510
+ + + +H A DV L + + L ++
Sbjct: 176 TRLYWQAPTDSHTAEGDVLTLLSICQWKPQ---ALLQWV 211
>d2j5aa1 d.58.14.1 (A:3-108) Ribosomal protein S6 {Aquifex aeolicus
[TaxId: 63363]}
Length = 106
Score = 76.4 bits (188), Expect = 4e-17
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 1 MIERYKKIIISGKGKIHRLEDWGRRSLAYQIKKVIKAHYICFNIEI-NKKTLLEIETSFR 59
E+ K+ I G+I EDWG R LAY I+K A Y + N + E++ +
Sbjct: 26 KFEQVKEFIKQKGGEILYEEDWGMRQLAYPIQKFNNARYFLVQFKTENPQLPNELDFQLK 85
Query: 60 FNDAILRYLTIKTKKVETEES 80
++ ++R+L I+ K+ E +++
Sbjct: 86 IDEDVIRWLNIQIKESEVKKN 106
>d2cyja1 c.103.1.1 (A:1-118) Hypothetical protein PH1505 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 118
Score = 70.7 bits (173), Expect = 4e-15
Identities = 12/96 (12%), Positives = 29/96 (30%), Gaps = 8/96 (8%)
Query: 1330 NGIFYTKSFLVSPEIDPIFW--SINKYNF-----LTKKDFIHISKFNPSVVILGTGNIQH 1382
+G + ++ P I+K L ++ + V+++GTG
Sbjct: 14 DGKEFDHDIVIYPSGRIERRMKEISKKKHGTSHKLDPEELEKYLVEDFDVLLVGTGIYGM 73
Query: 1383 FIHPKLTYILTQKNIGIECMNNQAACRTYNILVSDD 1418
+ L ++ + + A + L
Sbjct: 74 LSLLPESKKL-VEDKEVIEKPTKEALKLLEELWGKK 108
>d2q4qa1 c.103.1.1 (A:2-122) Hypothetical protein PTD015 (C11orf67)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 121
Score = 70.3 bits (172), Expect = 8e-15
Identities = 17/117 (14%), Positives = 37/117 (31%), Gaps = 7/117 (5%)
Query: 1317 TIVAYTNYGVKFRNGIFYTKSFLVSPEIDPIFWSINKYN-----FLTKKDFIHISKFNPS 1371
I + + +K + K V P W + + D + +
Sbjct: 4 EIASLSWGQMKVKGSNTTYKDCKVWPG-GSRTWDWRETGTEHSPGVQPADVKEVVEKGVQ 62
Query: 1372 VVILGTGNIQHFIHP-KLTYILTQKNIGIECMNNQAACRTYNILVSDDIKAMLALIL 1427
+++G G + P L + I + + + A + YN LV+ ++
Sbjct: 63 TLVIGRGMSEALKVPSSTVEYLKKHGIDVRVLQTEQAVKEYNALVAQGVRVGGVFHS 119
>d1cmwa1 a.60.7.1 (A:174-289) 5' to 3' exonuclease domain of DNA
polymerase Taq {Thermus aquaticus [TaxId: 271]}
Length = 116
Score = 65.6 bits (159), Expect = 2e-13
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 937 VSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLR 996
+ P++ DY +L GD SDNLPGVK IG KTA KLL ++ SLE ++ N + +K I + +
Sbjct: 1 LRPDQWADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRLKPAIREKIL 60
Query: 997 FALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKLLMQLFNKY 1045
++ L + ++TD L + + D + L +
Sbjct: 61 AHMDDLKLSWDLAKVRTDLPLEVDF------AKRREPDRERLRAFLERL 103
>d1diva1 d.99.1.1 (A:56-149) Ribosomal protein L9 C-domain {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 94
Score = 64.8 bits (158), Expect = 3e-13
Identities = 29/74 (39%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 237 NAKKIGEEIKKLNINIIKKSGVDGKLFGSVTNSDIVKELEK-KGLKIEKNKIKLPNNSIK 295
NAKK+ E+++KL + I K+G G+LFGS+T+ I + L+ GLK++K KI+L + I+
Sbjct: 9 NAKKLKEQLEKLTVTIPAKAGEGGRLFGSITSKQIAESLQAQHGLKLDKRKIELADA-IR 67
Query: 296 KIGNYYIDILLHNG 309
+G + + LH
Sbjct: 68 ALGYTNVPVKLHPE 81
>d2uubr1 a.4.8.1 (R:19-88) Ribosomal protein S18 {Thermus
thermophilus [TaxId: 274]}
Length = 70
Score = 63.5 bits (155), Expect = 3e-13
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 120 KKFCRFTVMNIKQIDYKDIETLKDFIQENGKIMAARLTGTCSHYQRQIT 168
K + T+ DY+++E LK F+ E GKI+ R TG + QR +
Sbjct: 1 KAKVKATLGEFDLRDYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILA 49
>d1ihna_ c.103.1.1 (A:) Hypothetical protein MT938 (MTH938) {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 113
Score = 64.2 bits (156), Expect = 7e-13
Identities = 11/105 (10%), Positives = 29/105 (27%), Gaps = 15/105 (14%)
Query: 1330 NGIFYTKSFLVSPE-------IDPIFWSINKYNFLTKKDFIHISKFNPSVVILGTGNIQH 1382
G Y +V + + + + +++ + + P +I+G+G
Sbjct: 15 RGREYRSDIVVHVDGSVTPRRKEISRRKYGTSHVMAEEELEELLEEKPESIIIGSGVHGA 74
Query: 1383 FIHPKLTYILTQKNIGIECMNNQAACRTYNILVSDDIKAMLALIL 1427
+ A + YN S + + +
Sbjct: 75 LETGF--------RSDATVLPTCEAIKRYNEERSAGRRVAAIIHV 111
>d1ul1x1 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nuclease)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 140
Score = 65.0 bits (158), Expect = 7e-13
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 937 VSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLR 996
++ E+ VD L+G SD ++ IGPK AV L+ ++ S+E I+ + K + +N
Sbjct: 1 LNQEQFVDLCILLG--SDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPNKYPVPENWL 58
Query: 997 FALNWLPKLKKILTIKTDCDL 1017
L+ + +L
Sbjct: 59 HKEAHQLFLEPEVLDPESVEL 79
>d1xo1a1 a.60.7.1 (A:186-290) T5 5'-exonuclease {Bacteriophage T5
[TaxId: 10726]}
Length = 105
Score = 63.1 bits (153), Expect = 2e-12
Identities = 18/100 (18%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
Query: 939 PEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV-IGKNLRF 997
E+ + +++GD+ DN+ GV+ IG K ++ ++ ++ +II+ +NL
Sbjct: 4 VEQFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFGNVLDIIDQLPLPGKQKYIQNLNA 63
Query: 998 ALNWLPKLKKILTIKTDCDLTKNIVSIPESLILQPKDEKL 1037
+ L + ++ + T C V ++
Sbjct: 64 SEELLFRNLILVDLPTYCVDAIAAVGQDVLDKFTKDILEI 103
>d2j01i1 d.99.1.1 (I:56-146) Ribosomal protein L9 C-domain {Thermus
thermophilus [TaxId: 274]}
Length = 91
Score = 60.2 bits (146), Expect = 9e-12
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 238 AKKIGEEIKKLNINIIKKSGVDGKLFGSVTNSDIVKELEK-KGLKIEKNKIKLPNNSIKK 296
A+++ E ++ L + I ++G + K++GSVT DI + L + G+ I+ ++ L IK+
Sbjct: 10 AERLKEILENLTLTIPVRAG-ETKIYGSVTAKDIAEALSRQHGVTIDPKRLALE-KPIKE 67
Query: 297 IGNYYIDILLHNG 309
+G Y + H
Sbjct: 68 LGEYVLTYKPHPE 80
>d2f96a1 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 202
Score = 63.2 bits (152), Expect = 1e-11
Identities = 29/185 (15%), Positives = 46/185 (24%), Gaps = 18/185 (9%)
Query: 316 YDYETFGLNVRRDRPFQFAAIRTDIMLNT---IDNPIMLYCKPAPDFLPDPRACLITKIT 372
D ET G N D + AA + ++ +P +P A T I
Sbjct: 16 VDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIK 75
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
L + E + I + K + IL F +N
Sbjct: 76 LDHPLRMAVQEEAALTEIFRGIRKALKANGCKRAILVGH---NSSFDLGFLNAAVARTGI 132
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLS--FVNNLSHKKAHDALSDVR 490
+ + + T L +++AH A D
Sbjct: 133 KRNPFHPFSSF----------DTATLAGLAYGQTVLAKACQAAGMEFDNREAHSARYDTE 182
Query: 491 ATLGL 495
T L
Sbjct: 183 KTAEL 187
>d2qalr1 a.4.8.1 (R:19-73) Ribosomal protein S18 {Escherichia coli
[TaxId: 562]}
Length = 55
Score = 58.0 bits (141), Expect = 2e-11
Identities = 22/37 (59%), Positives = 31/37 (83%)
Query: 132 QIDYKDIETLKDFIQENGKIMAARLTGTCSHYQRQIT 168
+IDYKDI TLK++I E+GKI+ +R+TGT + YQRQ+
Sbjct: 1 EIDYKDIATLKNYITESGKIVPSRITGTRAKYQRQLA 37
>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 105
Score = 51.1 bits (122), Expect = 2e-08
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 937 VSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLR 996
++ E+++D L+G +D GVK +G K A+ + Y + + + +
Sbjct: 1 LTREQLIDIAILVG--TDYNEGVKGVGVKKALNYIKTYGDIFRALKALKVNIDHVEEIRN 58
Query: 997 FALN 1000
F LN
Sbjct: 59 FFLN 62
>d1w0ha_ c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 200
Score = 49.6 bits (117), Expect = 6e-07
Identities = 21/203 (10%), Positives = 50/203 (24%), Gaps = 18/203 (8%)
Query: 312 TFLWYDYET----FGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
D+E +F + + I++ Y +P +
Sbjct: 7 YICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCIS 66
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
+T IT +I+ + LK Y+ +
Sbjct: 67 LTGITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRL 126
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSH-KKAHDAL 486
+ ++ + + KL + + + + H L
Sbjct: 127 KYPPFAKKWINI------------RKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGL 174
Query: 487 SDVRATLGLA-RLIRNNNPRLFN 508
D + +A R++++ N
Sbjct: 175 DDSKNIARIAVRMLQDGCELRIN 197
>d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease)
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 108
Score = 46.8 bits (111), Expect = 9e-07
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 937 VSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENIINNANNIKGV 990
+S + ++D +G N GVK IG K A +L+ + + + +
Sbjct: 1 ISLDDLIDIAIFMGT-DYNPGGVKGIGFKRAYELVRSGVAKDVLKKEVEYYDEI 53
>d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease)
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 120
Score = 37.2 bits (86), Expect = 0.003
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 937 VSPEKIVDYFSLIGDMSDNLPGVKKIGPKTAVKLLNQYNSLENII 981
++ EK+++ L+G N G+K IG K A++++
Sbjct: 1 LTREKLIELAILVG-TDYNPGGIKGIGLKKALEIVRHSKDPLAKF 44
>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein,
ISG20 {Human (Homo sapiens) [TaxId: 9606]}
Length = 173
Score = 35.7 bits (81), Expect = 0.015
Identities = 20/188 (10%), Positives = 50/188 (26%), Gaps = 28/188 (14%)
Query: 313 FLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKIT 372
+ D E GL R+ ++ + ++ P+ ++ +T
Sbjct: 2 VVAMDCEMVGLGPHRESGLARCSLVN------VHGAVLYDKFIRPEGEITDYRTRVSGVT 55
Query: 373 PQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKN 432
PQ + I++ + K
Sbjct: 56 PQHMVGATPFAVARLEILQ-----------------LLKGKLVVGHDLKHDF---QALKE 95
Query: 433 NCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRAT 492
+ S + + + + + + E L + + H ++ D RAT
Sbjct: 96 DMSGYTIYDTSTDRLLWREAKLDHCRRV--SLRVLSERLLHKSIQNSLLGHSSVEDARAT 153
Query: 493 LGLARLIR 500
+ L ++ +
Sbjct: 154 MELYQISQ 161
>d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the
epsilon subunit of DNA polymerase III {Escherichia coli
[TaxId: 562]}
Length = 174
Score = 34.2 bits (77), Expect = 0.054
Identities = 21/188 (11%), Positives = 47/188 (25%), Gaps = 26/188 (13%)
Query: 313 FLWYDYETFGLN-----VRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACL 367
+ D ET G+N + + A+ T +N +
Sbjct: 2 QIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH- 60
Query: 368 ITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYE 427
+ + FA + ++ + + FD + F + +
Sbjct: 61 ------GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPK 114
Query: 428 REWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALS 487
C D + V + + + + + S + H AL
Sbjct: 115 TNTF--CKVTDSLAVARKMFPGKRNSLDALCA------------RYEIDNSKRTLHGALL 160
Query: 488 DVRATLGL 495
D + +
Sbjct: 161 DAQILAEV 168
>d1iv0a_ c.55.3.8 (A:) Hypothetical protein, YqgF homologue {Thermus
thermophilus [TaxId: 274]}
Length = 98
Score = 30.3 bits (68), Expect = 0.46
Identities = 7/44 (15%), Positives = 14/44 (31%)
Query: 1260 IGIAFGNTLIKHAKPLKIIHSITNKAKFNEISKLVEKWKPNTVK 1303
IG+A G + A + T + + V + +
Sbjct: 13 IGLAVGEEGVPLASGRGYLVRKTLEEDVEALLDFVRREGLGKLV 56
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 29.0 bits (65), Expect = 0.53
Identities = 5/32 (15%), Positives = 12/32 (37%), Gaps = 3/32 (9%)
Query: 951 DMSDNLPGVKKIGPKTAVKLLNQYNSLENIIN 982
D +PG + K L++ ++ +
Sbjct: 3 DFLLKMPG---VNAKNCRSLMHHVKNIAELAA 31
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 56
Score = 28.2 bits (63), Expect = 0.90
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 954 DNLPGVKKIGPKTAVKLLNQYNSLENIINN 983
+ + GV GPK LL L+ + N
Sbjct: 5 ETIEGV---GPKRRQMLLKYMGGLQGLRNA 31
>d1nu0a_ c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Escherichia
coli [TaxId: 562]}
Length = 138
Score = 29.2 bits (65), Expect = 1.6
Identities = 14/71 (19%), Positives = 30/71 (42%)
Query: 1260 IGIAFGNTLIKHAKPLKIIHSITNKAKFNEISKLVEKWKPNTVKKMELKKIINTKHQTIV 1319
IG+A G + A+PL I + +N I +L+++W+P+ + + T+
Sbjct: 15 IGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTA 74
Query: 1320 AYTNYGVKFRN 1330
+ +
Sbjct: 75 RARKFANRIHG 85
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 61
Score = 27.7 bits (62), Expect = 1.6
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 954 DNLPGVKKIGPKTAVKLLNQ-YNSLENIIN-NANNIKGVIGKNLRFALNWLPKLKKILTI 1011
++LPG +GP TA KL Y++LE I + +K V G + AL + +K +
Sbjct: 4 EDLPG---VGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKAANL 60
>d3bzka2 a.60.2.6 (A:564-636) Transcriptional accessory factor Tex
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 73
Score = 27.8 bits (62), Expect = 1.7
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 238 AKKIGEEIKKLNINIIKKSGVDGK-----LFGSVTNSDIVKELEKKG 279
A +I+ L + +D K FG T +DI+KEL+K G
Sbjct: 21 AADTERDIRSLIGDSAFLKRLDPKKFTDETFGLPTVTDILKELDKPG 67
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain
{Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 60
Score = 27.0 bits (60), Expect = 2.2
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 954 DNLPGVKKIGPKTAVKLLNQ-YNSLENIIN-NANNIKGVIGKNLRFALNWLPKLKKILTI 1011
+LPG +GP TA KL+ Y I + + G + + A + + + +
Sbjct: 2 TDLPG---VGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDLCDL 58
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015
{Pyrococcus furiosus [TaxId: 2261]}
Length = 68
Score = 27.5 bits (61), Expect = 2.2
Identities = 7/39 (17%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 956 LPGVKKIGPKTAVKLLNQYNSLENIINNAN----NIKGV 990
+ G+ + A +LL + S+E + + ++G+
Sbjct: 12 VEGLPHVSATLARRLLKHFGSVERVFTASVAELMKVEGI 50
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum
pernix [TaxId: 56636]}
Length = 70
Score = 27.5 bits (61), Expect = 2.4
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 956 LPGVKKIGPKTAVKLLNQYNSLENIIN 982
L IG +TA ++L ++ SLE
Sbjct: 15 LQSFPGIGRRTAERILERFGSLERFFT 41
>d1vk1a_ d.268.1.2 (A:) Hypothetical protein PF0380 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 232
Score = 29.6 bits (66), Expect = 2.5
Identities = 10/93 (10%), Positives = 19/93 (20%)
Query: 409 FDDEITRFMFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKL 468
+ DE + W + L + + G+ SF +
Sbjct: 82 YFDEGVKVYTWYPAFKGDVNKVIERLKAEGLEVIEDEKAEEKAEKGEIAFALIGEKSFAI 141
Query: 469 EHLSFVNNLSHKKAHDALSDVRATLGLARLIRN 501
K + L L +
Sbjct: 142 PGGLEEQKKVSKVLDEMDQAKEIELVYYGLKED 174
>d1nb5i_ d.17.1.2 (I:) Cystatin A (stefin A) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 98
Score = 27.3 bits (61), Expect = 4.3
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 1289 EISKLVEKWKPNTVKKMELK----KIINTKHQTIVAYTNYGVK 1327
EI ++V+K KP +K + + K Q +VA TNY +K
Sbjct: 15 EIQEIVDKVKPQLEEKTNETYGKLEAVQYKTQ-VVAGTNYYIK 56
>d1stfi_ d.17.1.2 (I:) Cystatin B (stefin B) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 98
Score = 26.6 bits (59), Expect = 7.0
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 1289 EISKLVEKWKPNTVKKMELK----KIINTKHQTIVAYTNYGVKFRNG 1331
E + ++ + +K K K ++ K Q +VA TNY +K G
Sbjct: 15 ETQHIADQVRSQLEEKYNKKFPVFKAVSFKSQ-VVAGTNYFIKVHVG 60
>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha, AccA {Escherichia coli
[TaxId: 562]}
Length = 316
Score = 28.1 bits (62), Expect = 8.4
Identities = 13/78 (16%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 682 KLAILRSMSPK-KLSNVNFCFENKKLEELIFLYRARNFIETLSYKELKRWKKYRISRFYN 740
K+ L + S + + ++N E +L E ++ + + +L W+ +++R
Sbjct: 15 KIDSLTAGSRQDEKLDINIDEEVHRLRE-----KSVELTRKI-FADLGAWQIAQLARHPQ 68
Query: 741 KKNNLYNINMFYLEIESL 758
+ L + + + E + L
Sbjct: 69 RPYTLDYVRLAFDEFDEL 86
>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi
(Humicola insolens) [TaxId: 34413]}
Length = 116
Score = 26.7 bits (58), Expect = 9.1
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 9/74 (12%)
Query: 90 EKVLKMIFGKKNNKNRFKQKRQQQNPLFKRKKFCRFTVM------NIKQIDY---KDIET 140
E++ + + K + T+ + + Y + +E
Sbjct: 43 EELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFPTIKLYPAGAKGQPVTYSGSRTVED 102
Query: 141 LKDFIQENGKIMAA 154
L FI ENGK AA
Sbjct: 103 LIKFIAENGKYKAA 116
>d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 290
Score = 27.9 bits (61), Expect = 9.6
Identities = 12/100 (12%), Positives = 27/100 (27%), Gaps = 8/100 (8%)
Query: 217 IKEFEEKRIKLEKTAFTIFLNAKKIGEEIKKLNINIIKKSGVDGKLFGSVTNSDIVKELE 276
++ + L +A A +S ++ L
Sbjct: 142 LQAAAQALNPLGPSAMFYLAAAVSDFYVPVSEMPEHKIESSGGPLQITMKMVPKLLSPLV 201
Query: 277 KK--------GLKIEKNKIKLPNNSIKKIGNYYIDILLHN 308
K K+E + + N + K + Y +++ N
Sbjct: 202 KDWAPKAFIISFKLETDPAIVINRARKALEIYQHQVVVAN 241
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.414
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 5,543,633
Number of extensions: 286257
Number of successful extensions: 1006
Number of sequences better than 10.0: 1
Number of HSP's gapped: 978
Number of HSP's successfully gapped: 94
Length of query: 1428
Length of database: 2,407,596
Length adjustment: 97
Effective length of query: 1331
Effective length of database: 1,075,786
Effective search space: 1431871166
Effective search space used: 1431871166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.6 bits)