BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2883
(112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A4M|A Chain A, Structure Of Trprs Ii Bound To Atp
pdb|2A4M|B Chain B, Structure Of Trprs Ii Bound To Atp
pdb|2A4M|C Chain C, Structure Of Trprs Ii Bound To Atp
Length = 331
Score = 103 bits (256), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 68/109 (62%)
Query: 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVM 60
MYTDP HL SDPG+V+GNPVFT+LD F D + + GGLGDV +KK+LI+V+
Sbjct: 220 MYTDPGHLRASDPGRVEGNPVFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVL 279
Query: 61 QDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNI 109
L PIR +R + +D + + G+ + +E A +TL +++ AM +
Sbjct: 280 NGVLAPIRTRRAEYERDPDAVLRFVTEGTARGREVAAQTLGQVRRAMRL 328
>pdb|1YI8|B Chain B, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YI8|A Chain A, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YI8|C Chain C, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YIA|B Chain B, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YIA|A Chain A, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YIA|C Chain C, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YID|B Chain B, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp.
pdb|1YID|A Chain A, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp.
pdb|1YID|C Chain C, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp
Length = 351
Score = 100 bits (250), Expect = 1e-22, Method: Composition-based stats.
Identities = 46/109 (42%), Positives = 68/109 (62%)
Query: 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVM 60
MYTDP HL SDPG+V+GNPVFT+LD F D + + GGLGDV +KK+LI+V+
Sbjct: 240 MYTDPGHLRASDPGRVEGNPVFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVL 299
Query: 61 QDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNI 109
L PIR +R + +D + + G+ + +E A +TL +++ AM +
Sbjct: 300 NGVLAPIRTRRAEYERDPDAVLRFVTEGTARGREVAAQTLGQVRRAMRL 348
>pdb|2G36|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase (Ec
6.1.1.2) (Tryptophan-Trna Ligase)(Trprs) (Tm0492) From
Thermotoga Maritima At 2.50 A Resolution
Length = 340
Score = 62.4 bits (150), Expect = 7e-11, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 60/109 (55%)
Query: 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVM 60
M TDP + SDPG + PV+ Y F ++++ +G V KK L++ M
Sbjct: 230 MMTDPARVRRSDPGNPENCPVWKYHQAFDISEEESKWVWEGCTTASIGCVDCKKLLLKNM 289
Query: 61 QDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNI 109
+ L PI +++ +D Y+ D++ G++KA+E A KT++ ++ AMN+
Sbjct: 290 KRKLAPIWENFRKIDEDPHYVDDVIMEGTKKAREVAAKTMEEVRRAMNL 338
>pdb|2EL7|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Thermus Thermophilus
pdb|2EL7|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Thermus Thermophilus
Length = 337
Score = 56.6 bits (135), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 4 DPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVMQDF 63
DP + +SDPG + +FTYL F E + G+G +K+ L + + +
Sbjct: 223 DPQRIRLSDPGDPERTILFTYLSYFAPKDLVEALKE-EYRKAGVGTYVVKRILFDHLMEA 281
Query: 64 LFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNI 109
L PIR + + L KD Y+ D L G+++A+ A+ T++ ++ + +
Sbjct: 282 LRPIRERAEALKKDPDYVMDALLEGAKRARAVAQATMEEVREKVGL 327
>pdb|3SZ3|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Vibrio Cholerae With An Endogenous Tryptophan
Length = 341
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 36/55 (65%)
Query: 53 KKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAM 107
KK + E + L P++ + +++ D++Y+ +++ G+EKA +A +TLK++ A+
Sbjct: 281 KKDVGEAVVAMLEPVQAEYQRIRNDREYLNSVMRDGAEKASAKALQTLKKVYAAV 335
>pdb|3PRH|A Chain A, Tryptophanyl-Trna Synthetase Val144pro Mutant From B.
Subtilis
pdb|3PRH|B Chain B, Tryptophanyl-Trna Synthetase Val144pro Mutant From B.
Subtilis
Length = 388
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 43 YQG-GLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLK 101
Y+G G G+ K L EV+ + L PI+ + +L + ++ + IL G+E+A A K LK
Sbjct: 294 YEGKGYGE--FKGDLAEVVVNALKPIQDRYYELIESEE-LDRILDEGAERANRTANKMLK 350
Query: 102 RIKNAMNI 109
+++NAM +
Sbjct: 351 KMENAMGL 358
>pdb|2YY5|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
pdb|2YY5|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
pdb|2YY5|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
pdb|2YY5|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
Length = 348
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 52 IKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTL 100
+K L E + L I+ KR+Q+S+++ + + L+ G +AQ A TL
Sbjct: 287 LKNALTEATVNLLVNIQRKREQISREQVF--NCLQAGKNQAQATARTTL 333
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 28.9 bits (63), Expect = 0.72, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 36 CQYEISLYQGGLGDVTIKKYL---IEVMQDFLFPI----RIKRKQLSKDKKYIQDILKIG 88
CQYEI + + D I K + I ++Q L + +++ Q+ + +K IQ+I K
Sbjct: 825 CQYEIGVLLNSINDTMIPKLVADDIPLIQSLLLDVFPGSQLQPIQMDQLRKKIQEIAKQR 884
Query: 89 SEKAQEEAEKTLKRIKNAMNIDY 111
++E + + ++ +NI++
Sbjct: 885 HLVTKQEWVEKILQLHQILNINH 907
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
Length = 3245
Score = 28.9 bits (63), Expect = 0.72, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 36 CQYEISLYQGGLGDVTIKKYL---IEVMQDFLFPI----RIKRKQLSKDKKYIQDILKIG 88
CQYEI + + D I K + I ++Q L + +++ Q+ + +K IQ+I K
Sbjct: 825 CQYEIGVLLNSINDTMIPKLVADDIPLIQSLLLDVFPGSQLQPIQMDQLRKKIQEIAKQR 884
Query: 89 SEKAQEEAEKTLKRIKNAMNIDY 111
++E + + ++ +NI++
Sbjct: 885 HLVTKQEWVEKILQLHQILNINH 907
>pdb|2QUH|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
pdb|2QUI|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUI|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUJ|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
pdb|2QUK|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Atp(Putative)
pdb|2QUH|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
Length = 477
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 14 GKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVMQDFLFPIRIKRKQ 73
G D + F YL F D K Q G + +KK LIEV+Q + + +RK+
Sbjct: 392 GNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKE 451
Query: 74 LS 75
++
Sbjct: 452 VT 453
>pdb|1O5T|A Chain A, Crystal Structure Of The Aminoacylation Catalytic Fragment
Of Human Tryptophanyl-Trna Synthetase
Length = 378
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 14 GKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVMQDFLFPIRIKRKQ 73
G D + F YL F D K Q G + +KK LIEV+Q + + +RK+
Sbjct: 299 GNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKE 358
Query: 74 LS 75
++
Sbjct: 359 VT 360
>pdb|2AKE|A Chain A, Structure Of Human Tryptophanyl-Trna Synthetase In Complex
With Trna(Trp)
pdb|2DR2|A Chain A, Structure Of Human Tryptophanyl-trna Synthetase In Complex
With Trna(trp)
Length = 384
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 14 GKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVMQDFLFPIRIKRKQ 73
G D + F YL F D K Q G + +KK LIEV+Q + + +RK+
Sbjct: 299 GNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKE 358
Query: 74 LS 75
++
Sbjct: 359 VT 360
>pdb|1ULH|A Chain A, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
pdb|1ULH|B Chain B, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
Length = 390
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 14 GKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVMQDFLFPIRIKRKQ 73
G D + F YL F D K Q G + +KK LIEV+Q + + +RK+
Sbjct: 311 GNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKE 370
Query: 74 LS 75
++
Sbjct: 371 VT 372
>pdb|2QUJ|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
Length = 384
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 14 GKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVMQDFLFPIRIKRKQ 73
G D + F YL F D K Q G + +KK LIEV+Q + + +RK+
Sbjct: 299 GNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKE 358
Query: 74 LS 75
++
Sbjct: 359 VT 360
>pdb|1R6T|A Chain A, Crystal Structure Of Human Tryptophanyl-Trna Synthetase
pdb|1R6T|B Chain B, Crystal Structure Of Human Tryptophanyl-Trna Synthetase
Length = 477
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 14 GKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVMQDFLFPIRIKRKQ 73
G D + F YL F D K Q G +KK LIEV+Q + + +RK+
Sbjct: 392 GNCDVDVSFXYLTFFLEDDDKLEQIRKDYTSGAXLTGELKKALIEVLQPLIAEHQARRKE 451
Query: 74 LS 75
++
Sbjct: 452 VT 453
>pdb|3RWS|A Chain A, Crystal Structure Of Medicago Truncatula Nodulin 13
(Mtn13) In Complex With Trans-Zeatin
Length = 168
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 12/66 (18%)
Query: 5 PNHLHISDPGKVDGNPV----FTYLDQFGTDK-------KKNCQYEISLYQG-GLGDVTI 52
P + ++ + DG P T++ FG+ K ++NC Y S+Y+G L D +
Sbjct: 41 PRFIEKAETLEGDGGPGTIKKLTFVGDFGSTKQHIDMVDRENCAYTYSVYEGIALSDQPL 100
Query: 53 KKYLIE 58
+K + E
Sbjct: 101 EKIVFE 106
>pdb|2AZX|A Chain A, Charged And Uncharged Trnas Adopt Distinct Conformations
When Complexed With Human Tryptophanyl-Trna Synthetase
pdb|2AZX|B Chain B, Charged And Uncharged Trnas Adopt Distinct Conformations
When Complexed With Human Tryptophanyl-Trna Synthetase
Length = 477
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 14 GKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVMQDFLFPIRIKRKQ 73
G D + F YL F D K Q G +KK LIEV+Q + + +RK+
Sbjct: 392 GNCDVDVSFXYLTFFLEDDDKLEQIRKDYTSGAXLTGELKKALIEVLQPLIAEHQARRKE 451
Query: 74 LS 75
++
Sbjct: 452 VT 453
>pdb|1R6U|A Chain A, Crystal Structure Of An Active Fragment Of Human
Tryptophanyl-Trna Synthetase With Cytokine Activity
pdb|1R6U|B Chain B, Crystal Structure Of An Active Fragment Of Human
Tryptophanyl-Trna Synthetase With Cytokine Activity
Length = 437
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 14 GKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVMQDFLFPIRIKRKQ 73
G D + F YL F D K Q G +KK LIEV+Q + + +RK+
Sbjct: 345 GNCDVDVSFXYLTFFLEDDDKLEQIRKDYTSGAXLTGELKKALIEVLQPLIAEHQARRKE 404
Query: 74 LS 75
++
Sbjct: 405 VT 406
>pdb|3S1S|A Chain A, Characterization And Crystal Structure Of The Type Iig
Restriction Endonuclease Bpusi
Length = 878
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 41 SLYQGGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDIL 85
S YQ G G+ I +++V DF + K+K+ K K+ +++IL
Sbjct: 673 SAYQDGTGESIILDKILDVYVDFQV-YKSKQKKFEKSKEELKEIL 716
>pdb|3JXE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii
Tryptophanyl-Trna Synthetase In Complex With Trpamp
pdb|3JXE|B Chain B, Crystal Structure Of Pyrococcus Horikoshii
Tryptophanyl-Trna Synthetase In Complex With Trpamp
Length = 392
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 14 GKVDGNPVFTYLDQF-GTDKKKNCQYEISLYQGGLGDVTIKKYLIEVMQDFLFPIRIKRK 72
G+ + VF +L+ F D KK + + G L K+YLI +Q+FL + +RK
Sbjct: 296 GEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGECKRYLISKIQEFLKEHQRRRK 355
Query: 73 QLSKDKKYIQDILKIGSEKAQEEAEKTLKR 102
+ K + + K+ E E + LKR
Sbjct: 356 KAEKLVEKFKYTGKLAQEMWNEAIPEPLKR 385
>pdb|3TZE|A Chain A, Crystal Structure Of A Tryptophanyl-Trna Synthetase From
Encephalitozoon Cuniculi Bound To Tryptophan
pdb|3TZE|B Chain B, Crystal Structure Of A Tryptophanyl-Trna Synthetase From
Encephalitozoon Cuniculi Bound To Tryptophan
Length = 406
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 34/69 (49%)
Query: 9 HISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVMQDFLFPIR 68
H G +D + F YL F D ++ +Y +G + +K+ + V+Q+F+ +
Sbjct: 327 HREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIKGEITSKEMKEKCVVVIQEFVSRYQ 386
Query: 69 IKRKQLSKD 77
RK+++ D
Sbjct: 387 ESRKRVTDD 395
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.139 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,571,093
Number of Sequences: 62578
Number of extensions: 139207
Number of successful extensions: 450
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 430
Number of HSP's gapped (non-prelim): 25
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)