BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2883
(112 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q46127|SYW_CLOLO Tryptophan--tRNA ligase OS=Clostridium longisporum GN=trpS PE=3
SV=1
Length = 341
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 77/112 (68%)
Query: 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVM 60
MYTDPNH+ ++DPG+V+GN VFTYLD F D + + + +GGLGDV +KK+L E++
Sbjct: 226 MYTDPNHIKVTDPGQVEGNTVFTYLDTFCKDTETLEEMKAHYSRGGLGDVKVKKFLNEIL 285
Query: 61 QDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDYF 112
Q L PIR +RK+ KD + ILK GSEKA+E A TLK ++ + I+YF
Sbjct: 286 QAELEPIRNRRKEFQKDIPEVYRILKEGSEKAREVAAGTLKEVRETIGIEYF 337
>sp|Q9CJD1|SYW_LACLA Tryptophan--tRNA ligase OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=trpS PE=3 SV=1
Length = 341
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 77/114 (67%), Gaps = 2/114 (1%)
Query: 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFG--TDKKKNCQYEISLYQGGLGDVTIKKYLIE 58
MYTDP+H+ + DPGK++GN VF YLD FG D ++ + + GGLGDV K++L++
Sbjct: 227 MYTDPDHIKVEDPGKIEGNMVFHYLDVFGKAEDAEQISEMKAQYQAGGLGDVKTKRFLLD 286
Query: 59 VMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDYF 112
V+ L PIR +R + +++ Y+ D+LK GS KAQ A +TL +K+AM I+YF
Sbjct: 287 VLDRELSPIRERRIEFAQNMDYVYDMLKAGSLKAQAVASQTLDEVKSAMGINYF 340
>sp|Q8DRR1|SYW_STRMU Tryptophan--tRNA ligase OS=Streptococcus mutans serotype c (strain
ATCC 700610 / UA159) GN=trpS PE=3 SV=1
Length = 340
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 78/117 (66%), Gaps = 8/117 (6%)
Query: 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISL----YQ-GGLGDVTIKKY 55
MYTDPNH+ + DPG+++GN VF YLD FG +K Q +I+ YQ GGLGDV K Y
Sbjct: 227 MYTDPNHIRVEDPGQIEGNMVFHYLDIFG---RKEDQTDIAAMKEHYQSGGLGDVKTKHY 283
Query: 56 LIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDYF 112
L+++++ L PIR +R + K+ + DILK GSE A+E A +TL +K AM I+YF
Sbjct: 284 LLDILERELTPIRRRRLEYEKNMDQVLDILKKGSETARETASETLSGVKRAMGINYF 340
>sp|Q8DWP7|SYW_STRA5 Tryptophan--tRNA ligase OS=Streptococcus agalactiae serotype V
(strain ATCC BAA-611 / 2603 V/R) GN=trpS PE=3 SV=1
Length = 341
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 79/117 (67%), Gaps = 8/117 (6%)
Query: 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISL----YQ-GGLGDVTIKKY 55
MYTDPNH+ + +PG+++GN VF YLD FG D+ Q EI+ YQ GGLGDV K+Y
Sbjct: 227 MYTDPNHIKVEEPGQIEGNMVFHYLDVFGRDED---QKEITAMKEHYQKGGLGDVKTKRY 283
Query: 56 LIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDYF 112
L+++++ L PIR +R + +KD + +L+ GSEKAQ A TL +K+AM ++YF
Sbjct: 284 LLDILERELSPIRERRLEYAKDMGQVYQMLQKGSEKAQAVAASTLDEVKSAMGLNYF 340
>sp|Q8E2J5|SYW_STRA3 Tryptophan--tRNA ligase OS=Streptococcus agalactiae serotype III
(strain NEM316) GN=trpS PE=3 SV=1
Length = 341
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 79/117 (67%), Gaps = 8/117 (6%)
Query: 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISL----YQ-GGLGDVTIKKY 55
MYTDPNH+ + +PG+++GN VF YLD FG D+ Q EI+ YQ GGLGDV K+Y
Sbjct: 227 MYTDPNHIKVEEPGQIEGNMVFHYLDVFGRDED---QKEITAMKEHYQKGGLGDVKTKRY 283
Query: 56 LIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDYF 112
L+++++ L PIR +R + +KD + +L+ GSEKAQ A TL +K+AM ++YF
Sbjct: 284 LLDILERELSPIRERRLEYAKDMGQVYQMLQKGSEKAQAVAASTLDEVKSAMGLNYF 340
>sp|P67596|SYW_STRR6 Tryptophan--tRNA ligase OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=trpS PE=3 SV=1
Length = 341
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 77/114 (67%), Gaps = 2/114 (1%)
Query: 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFG--TDKKKNCQYEISLYQGGLGDVTIKKYLIE 58
MYTDP+H+ + DPGK++GN VF YLD FG D ++ + +GGLGDV K+YL+E
Sbjct: 227 MYTDPDHIRVEDPGKIEGNMVFHYLDVFGRPEDAQEIADMKERYQRGGLGDVKTKRYLLE 286
Query: 59 VMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDYF 112
+++ L PIR +R + +KD + ++++ GSE+A+E A +TL +K AM + YF
Sbjct: 287 ILERELGPIRERRIEFAKDMGEVYNMIQKGSERAREVAGQTLSEVKGAMGLHYF 340
>sp|P67595|SYW_STRPN Tryptophan--tRNA ligase OS=Streptococcus pneumoniae serotype 4
(strain ATCC BAA-334 / TIGR4) GN=trpS PE=3 SV=1
Length = 341
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 77/114 (67%), Gaps = 2/114 (1%)
Query: 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFG--TDKKKNCQYEISLYQGGLGDVTIKKYLIE 58
MYTDP+H+ + DPGK++GN VF YLD FG D ++ + +GGLGDV K+YL+E
Sbjct: 227 MYTDPDHIRVEDPGKIEGNMVFHYLDVFGRPEDAQEIADMKERYQRGGLGDVKTKRYLLE 286
Query: 59 VMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDYF 112
+++ L PIR +R + +KD + ++++ GSE+A+E A +TL +K AM + YF
Sbjct: 287 ILERELGPIRERRIEFAKDMGEVYNMIQKGSERAREVAGQTLSEVKGAMGLHYF 340
>sp|Q9RVD6|SYW2_DEIRA Tryptophan--tRNA ligase 2 OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=trpS2 PE=1 SV=1
Length = 351
Score = 100 bits (250), Expect = 2e-21, Method: Composition-based stats.
Identities = 46/109 (42%), Positives = 68/109 (62%)
Query: 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVM 60
MYTDP HL SDPG+V+GNPVFT+LD F D + + GGLGDV +KK+LI+V+
Sbjct: 240 MYTDPGHLRASDPGRVEGNPVFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVL 299
Query: 61 QDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNI 109
L PIR +R + +D + + G+ + +E A +TL +++ AM +
Sbjct: 300 NGVLAPIRTRRAEYERDPDAVLRFVTEGTARGREVAAQTLGQVRRAMRL 348
>sp|Q99XH4|SYW_STRP1 Tryptophan--tRNA ligase OS=Streptococcus pyogenes serotype M1
GN=trpS PE=3 SV=1
Length = 340
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 78/117 (66%), Gaps = 8/117 (6%)
Query: 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISL----YQ-GGLGDVTIKKY 55
MYTDPNH+ I DPG+++GN VF YLD F +K Q +I YQ GGLGDV K+Y
Sbjct: 227 MYTDPNHIKIEDPGQIEGNMVFHYLDIFA---RKEDQADIEAMKEHYQIGGLGDVKTKRY 283
Query: 56 LIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDYF 112
L+++++ L PIR +R + +KD + +L+ GS+KA+ A KTL +K+AM I+YF
Sbjct: 284 LLDILERELAPIRERRLEYAKDMGEVFRMLQEGSQKARTVAAKTLSEVKSAMGINYF 340
>sp|P0DG61|SYW_STRPQ Tryptophan--tRNA ligase OS=Streptococcus pyogenes serotype M3
(strain SSI-1) GN=trpS PE=3 SV=1
Length = 340
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 78/117 (66%), Gaps = 8/117 (6%)
Query: 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISL----YQ-GGLGDVTIKKY 55
MYTDPNH+ I DPG+++GN VF YLD F +K Q +I YQ GGLGDV K+Y
Sbjct: 227 MYTDPNHIKIEDPGQIEGNMVFHYLDIFA---RKEDQADIEAMKEHYQRGGLGDVKTKRY 283
Query: 56 LIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDYF 112
L+++++ L PIR +R + +KD + +L+ GS+KA+ A KTL +K+AM I+YF
Sbjct: 284 LLDILERELAPIRERRLEYAKDMGEVFRMLQEGSQKARTVAAKTLSEVKSAMGINYF 340
>sp|P67598|SYW_STRP8 Tryptophan--tRNA ligase OS=Streptococcus pyogenes serotype M18
(strain MGAS8232) GN=trpS PE=3 SV=1
Length = 340
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 78/117 (66%), Gaps = 8/117 (6%)
Query: 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISL----YQ-GGLGDVTIKKY 55
MYTDPNH+ I DPG+++GN VF YLD F +K Q +I YQ GGLGDV K+Y
Sbjct: 227 MYTDPNHIKIEDPGQIEGNMVFHYLDIFA---RKEDQADIEAMKEHYQRGGLGDVKTKRY 283
Query: 56 LIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDYF 112
L+++++ L PIR +R + +KD + +L+ GS+KA+ A KTL +K+AM I+YF
Sbjct: 284 LLDILERELAPIRERRLEYAKDMGEVFRMLQEGSQKARTVAAKTLSEVKSAMGINYF 340
>sp|Q5X9A2|SYW_STRP6 Tryptophan--tRNA ligase OS=Streptococcus pyogenes serotype M6
(strain ATCC BAA-946 / MGAS10394) GN=trpS PE=3 SV=2
Length = 340
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 78/117 (66%), Gaps = 8/117 (6%)
Query: 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISL----YQ-GGLGDVTIKKY 55
MYTDPNH+ I DPG+++GN VF YLD F +K Q +I YQ GGLGDV K+Y
Sbjct: 227 MYTDPNHIKIEDPGQIEGNMVFHYLDIFA---RKEDQADIEAMKEHYQRGGLGDVKTKRY 283
Query: 56 LIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDYF 112
L+++++ L PIR +R + +KD + +L+ GS+KA+ A KTL +K+AM I+YF
Sbjct: 284 LLDILERELAPIRERRLEYAKDMGEVFRMLQEGSQKARTVAAKTLSEVKSAMGINYF 340
>sp|P0DG60|SYW_STRP3 Tryptophan--tRNA ligase OS=Streptococcus pyogenes serotype M3
(strain ATCC BAA-595 / MGAS315) GN=trpS PE=3 SV=1
Length = 340
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 78/117 (66%), Gaps = 8/117 (6%)
Query: 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISL----YQ-GGLGDVTIKKY 55
MYTDPNH+ I DPG+++GN VF YLD F +K Q +I YQ GGLGDV K+Y
Sbjct: 227 MYTDPNHIKIEDPGQIEGNMVFHYLDIFA---RKEDQADIEAMKEHYQRGGLGDVKTKRY 283
Query: 56 LIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDYF 112
L+++++ L PIR +R + +KD + +L+ GS+KA+ A KTL +K+AM I+YF
Sbjct: 284 LLDILERELAPIRERRLEYAKDMGEVFRMLQEGSQKARTVAAKTLSEVKSAMGINYF 340
>sp|O83640|SYW_TREPA Tryptophan--tRNA ligase OS=Treponema pallidum (strain Nichols)
GN=trpS PE=3 SV=1
Length = 337
Score = 86.7 bits (213), Expect = 3e-17, Method: Composition-based stats.
Identities = 40/109 (36%), Positives = 60/109 (55%)
Query: 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVM 60
MYTDP PG+V+GNPVF Y D F + + ++ G +GD +K L +
Sbjct: 220 MYTDPARTRADIPGRVEGNPVFAYHDAFNPNTDEVAHFKERYRAGRVGDTEVKDALARAL 279
Query: 61 QDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNI 109
FL PIR +R QL + Y+ +L+ G + + EA KT++R+K AM +
Sbjct: 280 NTFLEPIRARRAQLEQQPAYLARVLEEGCARMRAEARKTMQRVKEAMGL 328
>sp|Q821H9|SYW_CHLCV Tryptophan--tRNA ligase OS=Chlamydophila caviae (strain GPIC)
GN=trpS PE=3 SV=1
Length = 345
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 66/109 (60%)
Query: 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVM 60
MYTDPN +H S PG+V+GNP+F Y D F +K++ +++ QG + DV IK L E +
Sbjct: 227 MYTDPNRIHASTPGRVEGNPLFIYHDIFNPNKEEVEEFKTRYRQGCIKDVEIKTRLAEEL 286
Query: 61 QDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNI 109
FL P R KR +L K +Q+ L+ G+E A++T++ + N + +
Sbjct: 287 IRFLQPFREKRAELLAHPKILQEALQKGTENMCALAKETMEEVHNTLEL 335
>sp|O84589|SYW_CHLTR Tryptophan--tRNA ligase OS=Chlamydia trachomatis (strain D/UW-3/Cx)
GN=trpS PE=3 SV=1
Length = 346
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 67/110 (60%)
Query: 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVM 60
+YTDPN +H + PG+V+GNP+F Y D F K++ +++ QG + DV +K L E +
Sbjct: 226 LYTDPNRIHATTPGRVEGNPLFIYHDLFNPHKEEVEEFKTRYRQGCIRDVEVKARLAEEI 285
Query: 61 QDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNID 110
FL P R KR +L K++++ L+ G+EK + A +T++ + + + +
Sbjct: 286 NLFLNPFREKRSELVAQPKFLEEALQQGTEKMRTVARETMEEVHDHLGLS 335
>sp|Q9PJF5|SYW_CHLMU Tryptophan--tRNA ligase OS=Chlamydia muridarum (strain MoPn / Nigg)
GN=trpS PE=3 SV=1
Length = 346
Score = 82.0 bits (201), Expect = 1e-15, Method: Composition-based stats.
Identities = 39/109 (35%), Positives = 65/109 (59%)
Query: 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVM 60
MYTDPN +H + PG+V+GNP+F Y D F K++ +++ QG + DV +K L E +
Sbjct: 226 MYTDPNRVHATTPGRVEGNPLFIYHDLFNPHKEEVEEFKTRYRQGCIKDVEVKARLAEEI 285
Query: 61 QDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNI 109
FL P R KR + K +++ L+ G+EK + A +T++ + N + +
Sbjct: 286 NLFLNPFREKRSEFVAQPKILEEALQKGTEKMRSVARETMEEVHNNLGL 334
>sp|Q9Z7A4|SYW_CHLPN Tryptophan--tRNA ligase OS=Chlamydia pneumoniae GN=trpS PE=3 SV=1
Length = 344
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 62/105 (59%)
Query: 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVM 60
MYTDPN + + PG+V+GNP+F Y D F K + +++ QG + D+ +K L E +
Sbjct: 227 MYTDPNRIRATTPGRVEGNPLFIYHDIFNPHKDEVEEFKARYRQGCIKDIEVKARLAEEL 286
Query: 61 QDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKN 105
FL PI+ +R + +Q++L+ G+ K +E A+ T++ + +
Sbjct: 287 IHFLKPIKERRSEFLSKPLALQNVLEDGTHKMREVAKVTMEEVHD 331
>sp|O51038|SYW_BORBU Tryptophan--tRNA ligase OS=Borrelia burgdorferi (strain ATCC 35210
/ B31 / CIP 102532 / DSM 4680) GN=trpS PE=3 SV=2
Length = 351
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 1/110 (0%)
Query: 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVM 60
MYTDPN + PG V+GNP+F Y F ++ ++ + +G +GDV +KK L +
Sbjct: 223 MYTDPNRIRADIPGNVEGNPIFIYHSFFNSNHEEVEDLKSRYKKGKVGDVEVKKKLFLAL 282
Query: 61 QDFLFPIRIKRKQL-SKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNI 109
FL PIR KR +K K YI +I+ G+ KA+ A K +K +K+ + +
Sbjct: 283 NSFLKPIRDKRSFYEAKKKDYIDEIIFDGTSKARFIANKVVKDVKDLIGL 332
>sp|Q9WYW2|SYW_THEMA Tryptophan--tRNA ligase OS=Thermotoga maritima (strain ATCC 43589 /
MSB8 / DSM 3109 / JCM 10099) GN=trpS PE=1 SV=1
Length = 328
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 60/109 (55%)
Query: 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVM 60
M TDP + SDPG + PV+ Y F ++++ +G V KK L++ M
Sbjct: 218 MMTDPARVRRSDPGNPENCPVWKYHQAFDISEEESKWVWEGCTTASIGCVDCKKLLLKNM 277
Query: 61 QDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNI 109
+ L PI +++ +D Y+ D++ G++KA+E A KT++ ++ AMN+
Sbjct: 278 KRKLAPIWENFRKIDEDPHYVDDVIMEGTKKAREVAAKTMEEVRRAMNL 326
>sp|O67115|SYW_AQUAE Tryptophan--tRNA ligase OS=Aquifex aeolicus (strain VF5) GN=trpS
PE=3 SV=1
Length = 395
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 67/109 (61%)
Query: 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVM 60
M+TDP + +DPG+ + PVF++ F D++ + E G LG V K+ L++ +
Sbjct: 286 MFTDPQKIRKNDPGRPEICPVFSWHKLFTKDEELVKKIEEDCRAGRLGCVECKRILLKHL 345
Query: 61 QDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNI 109
++FL PIR +R++L K I+++ S KA+E A+KT++ ++ AMN+
Sbjct: 346 EEFLEPIRERRRELEKRINEIEEVFYENSRKAREIAQKTMEEVRKAMNL 394
>sp|Q9RWV7|SYW_DEIRA Tryptophan--tRNA ligase OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=trpS PE=3 SV=1
Length = 330
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 3 TDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVMQD 62
TDP + +DPG D + Y F + Y+ G+G V KK L+ + +
Sbjct: 222 TDPARVRRTDPGDPDKCLIGDYHKLFSPPETLETVYQ-GCRTAGIGCVDCKKMLMTHITE 280
Query: 63 FLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIK 104
L PI+ + QL D Y++D L+ G ++A+ A + + ++
Sbjct: 281 HLDPIQTRAAQLRADPDYVRDALRQGDQEARAIASEVMDEVR 322
>sp|Q7UQA4|SYW_RHOBA Tryptophan--tRNA ligase OS=Rhodopirellula baltica (strain SH1)
GN=trpS PE=3 SV=1
Length = 320
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 45 GGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIK 104
GG G IKK + EV +++ P R KR++L D ++DIL G+++A+E A + R +
Sbjct: 255 GGFGYGEIKKAVAEVSEEYFAPARAKREELESDLDTVRDILAEGAKRAREVAASVVDRAR 314
>sp|Q8YXE4|SYW_NOSS1 Tryptophan--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=trpS PE=3 SV=1
Length = 335
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 3 TDP-NHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVMQ 61
TDP L DP + + N + T KK+ E++ +G K E
Sbjct: 228 TDPVKGLTFDDPERPECNNLLTLYMLLSGKKKE----EVAAECQDMGWGQFKPLFTETAI 283
Query: 62 DFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAM 107
+ L PI+ K ++++ DK Y++ +L+ G EKA+ A +TL +K A+
Sbjct: 284 NALKPIQEKYQEITADKGYLESVLRDGREKAETVANQTLADVKAAL 329
>sp|Q8DHG3|SYW_THEEB Tryptophan--tRNA ligase OS=Thermosynechococcus elongatus (strain
BP-1) GN=trpS PE=3 SV=1
Length = 330
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 3 TDP-NHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVMQ 61
TDP L DP + + N + + L Q T K K ++ +G K L + +
Sbjct: 224 TDPIRGLAFDDPDRPEANNLLS-LYQVLTGKTKEA---VAAECADMGWGQFKPLLTDAVI 279
Query: 62 DFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNA 106
L PI+ + ++ D Y++D+LK G E+A A TL+R+K A
Sbjct: 280 ATLEPIQQRYNEIMADPSYLKDLLKKGQEQAATVANATLERVKLA 324
>sp|P67590|SYW_MYCTU Tryptophan--tRNA ligase OS=Mycobacterium tuberculosis GN=trpS PE=3
SV=1
Length = 336
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 43 YQG-GLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLK 101
Y G G GD +KK E + +F+ PI+ + +L+ D ++ +L G+++A + A KT++
Sbjct: 269 YAGHGYGD--LKKDTAEAVVEFVNPIQARVDELTADPAELEAVLAAGAQRAHDVASKTVQ 326
Query: 102 RI 103
R+
Sbjct: 327 RV 328
>sp|P67591|SYW_MYCBO Tryptophan--tRNA ligase OS=Mycobacterium bovis (strain ATCC BAA-935
/ AF2122/97) GN=trpS PE=3 SV=1
Length = 336
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 43 YQG-GLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLK 101
Y G G GD +KK E + +F+ PI+ + +L+ D ++ +L G+++A + A KT++
Sbjct: 269 YAGHGYGD--LKKDTAEAVVEFVNPIQARVDELTADPAELEAVLAAGAQRAHDVASKTVQ 326
Query: 102 RI 103
R+
Sbjct: 327 RV 328
>sp|Q5E2G5|SYW_VIBF1 Tryptophan--tRNA ligase OS=Vibrio fischeri (strain ATCC 700601 /
ES114) GN=trpS PE=3 SV=1
Length = 338
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 43 YQGGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKR 102
YQG KK + E + L PI+ + K++ +D+ Y+ ++K G+EKA E A TLK+
Sbjct: 268 YQGVEMYGPFKKDVGEAIVTMLEPIQEEYKRIREDRAYMDAVMKAGAEKASERAAVTLKK 327
Query: 103 IKNAM 107
A+
Sbjct: 328 AYEAV 332
>sp|Q49901|SYW_MYCLE Tryptophan--tRNA ligase OS=Mycobacterium leprae (strain TN) GN=trpS
PE=3 SV=1
Length = 343
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 46 GLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKN 105
G GD +KK E + +F+ PI+ + +L D ++ +L +G+++AQ+ A KT++R+ +
Sbjct: 277 GYGD--LKKDTAEAVVEFVSPIKDRVDELMADLTELEVVLAVGAQRAQDVAGKTMQRVYD 334
Query: 106 AM 107
+
Sbjct: 335 RL 336
>sp|Q82HU1|SYW1_STRAW Tryptophan--tRNA ligase 1 OS=Streptomyces avermitilis (strain ATCC
31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=trpS1 PE=3 SV=1
Length = 337
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 46 GLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKR 102
G G +K L EVM DF+ P R + +Q D + + IL G+EKA+ A +TL +
Sbjct: 269 GKGYGALKTDLAEVMVDFVTPFRERTQQYLDDPETLDSILAKGAEKARAVAAETLSQ 325
>sp|Q8CJX0|SYW1_STRCO Tryptophan--tRNA ligase 1 OS=Streptomyces coelicolor (strain ATCC
BAA-471 / A3(2) / M145) GN=trpS1 PE=3 SV=1
Length = 336
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 51 TIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNI 109
+KK E + + L P+R + +LS D Y+ +L+ G+EKA+ A T+ A+ +
Sbjct: 270 ALKKDTAEAVVEMLRPVRERHMELSADPGYVDGVLREGAEKARAMARPTVDDAYRAIGL 328
>sp|Q7VZ05|SYW_BORPE Tryptophan--tRNA ligase OS=Bordetella pertussis (strain Tohama I /
ATCC BAA-589 / NCTC 13251) GN=trpS PE=3 SV=1
Length = 451
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
Query: 12 DPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQG-GLGDVTIKKYLIEVMQDFLFPIRIK 70
+P + + ++ F T ++++ + L +G G GD K+ L E ++ L P+R +
Sbjct: 237 EPKDAEASHLYMLYRAFST-QQESMAFRRQLEEGMGWGDA--KQALYERLERDLAPMRER 293
Query: 71 RKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNI 109
+L + I+DIL++G+ KA++ A+ ++ +++A+ +
Sbjct: 294 YVELISNPGLIEDILQVGAAKARKLAQPLVRTLRDAVGL 332
>sp|Q8UIE8|SYW_AGRT5 Tryptophan--tRNA ligase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=trpS PE=3 SV=2
Length = 354
Score = 37.7 bits (86), Expect = 0.023, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 45 GGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIK 104
GG T K L+E+ + L P+ + ++L D +I IL G E+A+ AEKT+ ++
Sbjct: 288 GGQQFSTFKPALVELAVNVLAPVNNEMRRLLDDPTHIDAILSQGGERARTIAEKTMNEVR 347
Query: 105 N 105
+
Sbjct: 348 D 348
>sp|Q8EK12|SYW_SHEON Tryptophan--tRNA ligase OS=Shewanella oneidensis (strain MR-1)
GN=trpS PE=3 SV=1
Length = 332
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 58 EVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRI 103
E + L P++ + + L D+ Y+ +++ G+E AQ AE TLK++
Sbjct: 279 EAVVGMLEPLQERYRALRADRAYLDQVMRAGAENAQARAEVTLKKV 324
>sp|Q8XMQ5|SYW_CLOPE Tryptophan--tRNA ligase OS=Clostridium perfringens (strain 13 /
Type A) GN=trpS PE=3 SV=1
Length = 332
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%)
Query: 46 GLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKN 105
G G K + E + + L P++ K K L DKK +++I K G+EKA A KTL++++
Sbjct: 266 GKGYAEFKNDVAEAIVEELAPVQEKVKALLGDKKALEEIYKKGAEKANYAAMKTLRKMQK 325
Query: 106 AMNI 109
+ +
Sbjct: 326 KIGL 329
>sp|Q6AGQ7|SYW_LEIXX Tryptophan--tRNA ligase OS=Leifsonia xyli subsp. xyli (strain
CTCB07) GN=trpS PE=3 SV=1
Length = 337
Score = 36.6 bits (83), Expect = 0.048, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 37 QYEISLYQGGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEA 96
Q E+ G GD KK L+EV+ D L PIR + +L D + IL + +A E A
Sbjct: 261 QIELDYEGKGYGD--FKKGLVEVVVDALGPIRERTLELLADPAELDRILAGNAARAGEAA 318
Query: 97 EKTLKRIKNAM 107
E TL + A+
Sbjct: 319 EITLAKAYEAI 329
>sp|Q92HR1|SYW_RICCN Tryptophan--tRNA ligase OS=Rickettsia conorii (strain ATCC VR-613 /
Malish 7) GN=trpS PE=3 SV=1
Length = 330
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 25 LDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDI 84
LD + + +++ + I YQ G K+ L E++ L PIR K +L DK+Y+ I
Sbjct: 245 LDIYSSLSEESLEQIIGNYQNQ-GFAKFKEDLAEIIITNLQPIRDKYLELMNDKEYLLKI 303
Query: 85 LKIGSEKAQEEAEKTLKRIK 104
L G+EKA+ A +T+ +K
Sbjct: 304 LHKGAEKARIRASETVNEVK 323
>sp|Q68WR2|SYW_RICTY Tryptophan--tRNA ligase OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=trpS PE=3 SV=1
Length = 330
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 25 LDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDI 84
LD + + K++ + I+ YQ G K+ L E++ L PIR K +L DK+Y+ I
Sbjct: 245 LDIYKSLSKESMEKIINNYQNQ-GFAKFKEDLAEIIITNLQPIRDKCLELMNDKEYLLKI 303
Query: 85 LKIGSEKAQEEAEKTLKRIK 104
L G+EKA+ A +T+ +K
Sbjct: 304 LHKGAEKAKIRASETVNEVK 323
>sp|Q7W5T6|SYW_BORPA Tryptophan--tRNA ligase OS=Bordetella parapertussis (strain 12822 /
ATCC BAA-587 / NCTC 13253) GN=trpS PE=3 SV=1
Length = 451
Score = 36.2 bits (82), Expect = 0.066, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 12 DPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQG-GLGDVTIKKYLIEVMQDFLFPIRIK 70
+P + + ++ F T ++++ + L +G G GD K+ L E ++ L P+R +
Sbjct: 237 EPKDAEASHLYMLYRAFST-QQESMAFRRQLEEGMGWGDA--KQALYERLERDLAPMRER 293
Query: 71 RKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNI 109
+L + I+DIL+ G+ KA++ A+ ++ +++A+ +
Sbjct: 294 YVELISNPGLIEDILQAGAAKARKLAQPLVRTLRDAVGL 332
>sp|Q7WGI7|SYW_BORBR Tryptophan--tRNA ligase OS=Bordetella bronchiseptica (strain ATCC
BAA-588 / NCTC 13252 / RB50) GN=trpS PE=3 SV=1
Length = 451
Score = 36.2 bits (82), Expect = 0.066, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 12 DPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQG-GLGDVTIKKYLIEVMQDFLFPIRIK 70
+P + + ++ F T ++++ + L +G G GD K+ L E ++ L P+R +
Sbjct: 237 EPKDAEASHLYMLYRAFST-QQESMAFRRQLEEGMGWGDA--KQALYERLERDLAPMRER 293
Query: 71 RKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNI 109
+L + I+DIL+ G+ KA++ A+ ++ +++A+ +
Sbjct: 294 YVELISNPGLIEDILQAGAAKARKLAQPLVRTLRDAVGL 332
>sp|Q9KNV7|SYW_VIBCH Tryptophan--tRNA ligase OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=trpS PE=1 SV=2
Length = 338
Score = 36.2 bits (82), Expect = 0.068, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 36/55 (65%)
Query: 53 KKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAM 107
KK + E + L P++ + +++ D++Y+ +++ G+EKA +A +TLK++ A+
Sbjct: 278 KKDVGEAVVAMLEPVQAEYQRIRNDREYLNSVMRDGAEKASAKALQTLKKVYAAV 332
>sp|Q83HC3|SYW_TROW8 Tryptophan--tRNA ligase OS=Tropheryma whipplei (strain TW08/27)
GN=trpS PE=3 SV=1
Length = 335
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 35 NCQYE--ISLYQGGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKA 92
+C E +++Y G V +KK L +++ + I + +L DK YI+ IL SE+A
Sbjct: 259 DCTIEQTVNIYSGKKYSV-LKKDLSDILVEVCTTIATRTNELLDDKNYIRKILVTASEQA 317
Query: 93 QEEAEKTLKRIKNAMNI 109
+ A+KT+ R+ + +
Sbjct: 318 RGVAQKTIDRVYEKLGV 334
>sp|Q83FN1|SYW_TROWT Tryptophan--tRNA ligase OS=Tropheryma whipplei (strain Twist)
GN=trpS PE=3 SV=1
Length = 335
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 35 NCQYE--ISLYQGGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKA 92
+C E +++Y G V +KK L +++ + I + +L DK YI+ IL SE+A
Sbjct: 259 DCTIEQTVNIYSGKKYSV-LKKDLSDILVEVCTTIATRTNELLDDKNYIRKILVTASEQA 317
Query: 93 QEEAEKTLKRIKNAMNI 109
+ A+KT+ R+ + +
Sbjct: 318 RGVAQKTIDRVYEKLGV 334
>sp|Q8DCT6|SYW_VIBVU Tryptophan--tRNA ligase OS=Vibrio vulnificus (strain CMCP6) GN=trpS
PE=3 SV=1
Length = 338
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 36/61 (59%)
Query: 43 YQGGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKR 102
YQG KK + E + L PI+ + ++ +D+ Y+ ++++ G++KA A +TLK+
Sbjct: 268 YQGVEMYGPFKKDVGEALVSMLEPIQAEYHRIREDRGYMNEVMRQGADKASARAAETLKK 327
Query: 103 I 103
+
Sbjct: 328 V 328
>sp|Q97LD6|SYW_CLOAB Tryptophan--tRNA ligase OS=Clostridium acetobutylicum (strain ATCC
824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=trpS PE=3 SV=2
Length = 335
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 64 LFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRI 103
L PI+ K +L KDK Y+QDI K G++KA A KT+ ++
Sbjct: 285 LEPIQNKVNELLKDKAYLQDICKKGAQKASYIANKTVSKM 324
>sp|Q7NCG8|SYW_GLOVI Tryptophan--tRNA ligase OS=Gloeobacter violaceus (strain PCC 7421)
GN=trpS PE=3 SV=1
Length = 336
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 39 EISLYQGGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEK 98
E G G K L +++ ++L PIR + ++ + Y++ IL+ G+ +A + A
Sbjct: 264 EARFADAGFG--RFKPILADLVIEYLRPIRERYDAIAGESGYLEGILREGALRASKVAGL 321
Query: 99 TLKRIKNAMNI 109
TL+RI++ M +
Sbjct: 322 TLERIRDRMGL 332
>sp|Q7MT94|SYW_PORGI Tryptophan--tRNA ligase OS=Porphyromonas gingivalis (strain ATCC
BAA-308 / W83) GN=trpS PE=3 SV=1
Length = 327
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 33/54 (61%)
Query: 52 IKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKN 105
+KK L + F PIR + ++ D+ ++ +++ G+E+A+E A +TL +++
Sbjct: 269 LKKQLAADIVAFTTPIRERILEIQADEAFLDRVVREGAERARESAARTLAEVRH 322
>sp|Q7MH15|SYW_VIBVY Tryptophan--tRNA ligase OS=Vibrio vulnificus (strain YJ016) GN=trpS
PE=3 SV=1
Length = 338
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 36/61 (59%)
Query: 43 YQGGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKR 102
YQG KK + E + L PI+ + ++ +D+ Y+ ++++ G++KA A +TLK+
Sbjct: 268 YQGVEMYGPFKKDVGEALVAMLEPIQAEYHRIREDRGYMNEVMRQGADKASARAAETLKK 327
Query: 103 I 103
+
Sbjct: 328 V 328
>sp|Q7TV34|SYW_PROMM Tryptophan--tRNA ligase OS=Prochlorococcus marinus (strain MIT
9313) GN=trpS PE=3 SV=1
Length = 337
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 34/61 (55%)
Query: 47 LGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNA 106
+G T K L + L PI+ + +QL D+ + +L G +A+E A+ TL+R++ A
Sbjct: 271 MGWGTFKPLLADATVSALEPIQHRYQQLMGDRIELIRVLDQGRTRAEETAQATLQRVRQA 330
Query: 107 M 107
+
Sbjct: 331 L 331
>sp|Q9ZD76|SYW_RICPR Tryptophan--tRNA ligase OS=Rickettsia prowazekii (strain Madrid E)
GN=trpS PE=3 SV=1
Length = 330
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 6 NHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVMQDFLF 65
+HL K + LD + + K++ + I YQ G K+ L E++ L
Sbjct: 226 DHLSFISYNKKTRPEISNLLDIYKSFSKESIEKIIDNYQNQ-GFAKFKEDLAEIIITNLQ 284
Query: 66 PIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIK 104
PIR K +L DK+Y+ IL G++KA+ A +T+ +K
Sbjct: 285 PIRNKCLELMNDKEYLLKILHKGAQKARIRASETVNEVK 323
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.139 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,786,369
Number of Sequences: 539616
Number of extensions: 1720421
Number of successful extensions: 5595
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 5485
Number of HSP's gapped (non-prelim): 129
length of query: 112
length of database: 191,569,459
effective HSP length: 80
effective length of query: 32
effective length of database: 148,400,179
effective search space: 4748805728
effective search space used: 4748805728
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)