Query psy2883
Match_columns 112
No_of_seqs 115 out of 1074
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 19:20:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2883.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2883hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12283 tryptophanyl-tRNA syn 100.0 2E-30 4.3E-35 200.7 14.3 107 1-111 289-398 (398)
2 PLN02886 aminoacyl-tRNA ligase 100.0 1.5E-29 3.3E-34 195.6 13.8 106 1-111 279-386 (389)
3 PRK12284 tryptophanyl-tRNA syn 100.0 1.2E-28 2.5E-33 192.2 14.1 106 1-111 227-333 (431)
4 PRK12282 tryptophanyl-tRNA syn 100.0 2E-28 4.3E-33 186.8 14.6 110 1-112 221-332 (333)
5 KOG2713|consensus 100.0 1.5E-28 3.3E-33 182.1 11.6 106 1-111 239-346 (347)
6 PRK00927 tryptophanyl-tRNA syn 100.0 7.1E-28 1.5E-32 183.8 14.4 108 1-112 221-333 (333)
7 PRK12556 tryptophanyl-tRNA syn 99.9 3.2E-27 7E-32 180.1 13.7 105 1-110 227-332 (332)
8 TIGR00233 trpS tryptophanyl-tR 99.9 1.6E-24 3.5E-29 165.1 13.4 107 1-109 218-328 (328)
9 COG0180 TrpS Tryptophanyl-tRNA 99.9 2.6E-21 5.6E-26 146.2 8.8 88 1-91 224-314 (314)
10 PRK12285 tryptophanyl-tRNA syn 99.4 6.6E-13 1.4E-17 102.9 9.7 84 1-88 277-365 (368)
11 PLN02486 aminoacyl-tRNA ligase 99.3 3.8E-11 8.2E-16 93.5 9.1 81 1-85 292-377 (383)
12 PTZ00348 tyrosyl-tRNA syntheta 99.0 7.9E-10 1.7E-14 91.3 8.4 73 1-73 248-339 (682)
13 PRK08560 tyrosyl-tRNA syntheta 99.0 2.1E-09 4.5E-14 82.3 7.0 63 11-73 242-322 (329)
14 cd00806 TrpRS_core catalytic c 98.8 1.3E-08 2.8E-13 76.4 6.0 59 1-63 217-280 (280)
15 PTZ00126 tyrosyl-tRNA syntheta 98.7 6.4E-08 1.4E-12 75.6 6.9 63 10-72 284-364 (383)
16 KOG2145|consensus 97.6 0.00017 3.6E-09 54.9 5.6 70 11-84 318-389 (397)
17 PF00579 tRNA-synt_1b: tRNA sy 96.7 0.00027 5.9E-09 53.0 -1.0 64 1-65 224-292 (292)
18 cd00805 TyrRS_core catalytic c 96.2 0.0059 1.3E-07 45.6 3.6 41 17-62 226-268 (269)
19 PRK05912 tyrosyl-tRNA syntheta 95.8 0.011 2.4E-07 46.7 3.6 50 15-69 262-313 (408)
20 PTZ00348 tyrosyl-tRNA syntheta 95.5 0.17 3.6E-06 42.7 9.6 62 10-72 583-661 (682)
21 cd00395 Tyr_Trp_RS_core cataly 95.2 0.048 1E-06 40.9 5.0 42 18-63 228-273 (273)
22 PRK13354 tyrosyl-tRNA syntheta 94.3 0.11 2.4E-06 41.2 5.3 53 19-72 261-314 (410)
23 KOG2144|consensus 94.2 0.12 2.6E-06 39.6 5.1 40 36-75 294-335 (360)
24 PF09551 Spore_II_R: Stage II 73.4 23 0.0005 23.9 6.4 50 49-102 18-67 (130)
25 PF15605 Toxin_52: Putative to 67.4 11 0.00025 24.4 3.7 46 62-107 47-101 (103)
26 PF03904 DUF334: Domain of unk 63.7 58 0.0013 24.1 7.7 45 61-107 96-140 (230)
27 PF12057 DUF3538: Domain of un 61.9 5.4 0.00012 26.6 1.5 47 59-108 10-56 (120)
28 PF13524 Glyco_trans_1_2: Glyc 61.8 29 0.00062 20.7 4.8 31 63-93 48-78 (92)
29 TIGR02837 spore_II_R stage II 61.6 48 0.001 23.4 6.3 51 48-102 52-102 (168)
30 COG4904 Uncharacterized protei 59.0 59 0.0013 22.7 7.1 21 90-110 62-82 (174)
31 PF13040 DUF3901: Protein of u 58.7 16 0.00035 19.6 2.7 21 67-87 12-32 (40)
32 cd07643 I-BAR_IMD_MIM Inverse 58.1 50 0.0011 24.5 6.1 45 50-94 85-129 (231)
33 PF15292 Treslin_N: Treslin N- 57.0 46 0.001 28.9 6.5 54 53-111 541-594 (803)
34 smart00807 AKAP_110 A-kinase a 56.8 42 0.00092 28.5 6.1 58 50-107 329-390 (851)
35 PF01417 ENTH: ENTH domain; I 56.7 47 0.001 21.5 5.4 52 55-110 39-95 (125)
36 PF14842 FliG_N: FliG N-termin 55.6 46 0.001 21.2 5.1 66 22-94 24-93 (108)
37 PF07730 HisKA_3: Histidine ki 53.6 39 0.00085 19.0 6.2 50 54-107 7-60 (68)
38 COG4575 ElaB Uncharacterized c 53.5 60 0.0013 21.1 6.0 8 92-99 68-75 (104)
39 COG3783 CybC Soluble cytochrom 52.3 52 0.0011 21.1 4.7 44 63-106 51-94 (100)
40 PRK10017 colanic acid biosynth 51.9 68 0.0015 25.6 6.5 42 67-108 382-423 (426)
41 PF05289 BLYB: Borrelia hemoly 49.9 46 0.001 21.6 4.3 25 51-75 57-81 (105)
42 cd03571 ENTH_epsin ENTH domain 49.3 63 0.0014 21.3 5.1 57 55-111 37-93 (123)
43 COG4585 Signal transduction hi 49.3 1.1E+02 0.0023 23.4 7.1 49 55-107 177-229 (365)
44 PF02037 SAP: SAP domain; Int 45.6 38 0.00082 17.2 2.9 30 35-64 4-35 (35)
45 PF05716 AKAP_110: A-kinase an 44.6 1.3E+02 0.0028 25.5 7.1 58 50-107 158-219 (685)
46 cd05024 S-100A10 S-100A10: A s 41.7 84 0.0018 19.8 4.5 33 47-87 24-56 (91)
47 PF07432 Hc1: Histone H1-like 41.6 83 0.0018 20.9 4.6 42 62-107 4-45 (123)
48 COG0114 FumC Fumarase [Energy 41.1 39 0.00084 27.3 3.5 55 56-110 382-444 (462)
49 PF05957 DUF883: Bacterial pro 40.7 87 0.0019 19.2 8.2 54 52-105 17-71 (94)
50 PF04977 DivIC: Septum formati 40.6 74 0.0016 18.4 4.3 26 61-86 37-62 (80)
51 KOG0859|consensus 40.2 1.5E+02 0.0032 21.7 7.8 51 38-90 81-133 (217)
52 PRK10509 bacterioferritin-asso 38.0 57 0.0012 19.0 3.1 33 35-67 24-57 (64)
53 COG5016 Pyruvate/oxaloacetate 37.4 2.3E+02 0.005 23.2 7.9 57 17-74 224-282 (472)
54 PF02061 Lambda_CIII: Lambda P 36.9 68 0.0015 17.4 3.0 32 47-78 11-42 (45)
55 smart00513 SAP Putative DNA-bi 36.9 59 0.0013 16.2 3.1 30 35-64 4-35 (35)
56 PRK10548 flagellar biosynthesi 36.2 81 0.0017 20.9 4.0 29 79-108 66-94 (121)
57 PF11348 DUF3150: Protein of u 35.6 1.1E+02 0.0024 22.8 5.0 60 52-111 78-144 (257)
58 PF06465 DUF1087: Domain of Un 34.7 97 0.0021 18.4 3.8 26 76-101 22-47 (66)
59 PF08886 GshA: Glutamate-cyste 34.2 56 0.0012 26.1 3.4 22 54-75 235-256 (404)
60 PF09164 VitD-bind_III: Vitami 33.4 1.1E+02 0.0024 18.3 4.9 36 46-90 8-43 (68)
61 TIGR01725 phge_HK97_gp10 phage 32.4 1.3E+02 0.0029 18.9 4.8 35 64-98 4-40 (119)
62 PF12252 SidE: Dot/Icm substra 31.6 1.8E+02 0.004 26.7 6.3 76 16-107 938-1024(1439)
63 KOG4727|consensus 30.9 1.1E+02 0.0023 21.9 4.0 41 35-75 113-156 (193)
64 TIGR02809 phasin_3 phasin fami 30.8 1.6E+02 0.0034 19.3 7.0 29 77-105 58-86 (110)
65 PHA01750 hypothetical protein 29.7 1.3E+02 0.0028 18.0 6.1 45 34-80 15-60 (75)
66 TIGR02049 gshA_ferroox glutama 29.6 63 0.0014 25.8 3.0 22 54-75 232-253 (403)
67 PF06034 DUF919: Nucleopolyhed 28.8 79 0.0017 18.6 2.7 22 66-87 25-46 (62)
68 PRK09631 DNA topoisomerase IV 28.5 3.2E+02 0.007 23.3 7.1 42 64-109 406-447 (635)
69 PF09958 DUF2192: Uncharacteri 28.2 1.6E+02 0.0035 21.8 4.8 42 66-111 5-46 (231)
70 COG4464 CapC Capsular polysacc 28.1 55 0.0012 24.4 2.3 39 52-90 118-159 (254)
71 COG5051 RPL36A Ribosomal prote 27.6 86 0.0019 19.8 2.8 37 62-107 48-84 (97)
72 PRK00409 recombination and DNA 27.5 4.2E+02 0.009 23.1 10.4 17 12-28 481-497 (782)
73 COG4565 CitB Response regulato 27.4 2.5E+02 0.0054 20.8 5.6 71 36-107 85-167 (224)
74 KOG3046|consensus 27.3 1.1E+02 0.0023 21.1 3.5 30 47-76 109-138 (147)
75 COG4879 Uncharacterized protei 27.2 2.5E+02 0.0055 20.6 6.2 40 67-110 8-48 (243)
76 PF14562 Endonuc_BglI: Restric 26.8 2.7E+02 0.0058 21.0 5.7 39 67-105 8-46 (292)
77 PF11803 UXS1_N: UDP-glucurona 26.5 86 0.0019 19.2 2.6 25 50-76 47-71 (78)
78 TIGR03504 FimV_Cterm FimV C-te 26.0 67 0.0014 17.3 1.9 23 79-101 20-42 (44)
79 COG4008 Predicted metal-bindin 25.9 1E+02 0.0022 20.9 3.1 27 49-75 96-122 (153)
80 TIGR01069 mutS2 MutS2 family p 25.0 4.6E+02 0.01 22.8 10.4 16 13-28 477-492 (771)
81 PRK01558 V-type ATP synthase s 24.9 2E+02 0.0042 20.4 4.7 35 61-95 14-49 (198)
82 PRK10404 hypothetical protein; 23.7 2E+02 0.0044 18.3 7.4 51 55-105 27-78 (101)
83 PF02734 Dak2: DAK2 domain; I 23.6 1E+02 0.0023 21.3 3.0 41 60-101 100-140 (175)
84 PRK13979 DNA topoisomerase IV 23.5 2.9E+02 0.0064 24.8 6.2 48 63-111 447-494 (957)
85 KOG0638|consensus 23.5 65 0.0014 25.3 2.1 53 56-109 269-321 (381)
86 PF12066 DUF3546: Domain of un 23.1 2.2E+02 0.0047 18.3 6.8 61 33-103 11-78 (110)
87 COG2357 PpGpp synthetase catal 22.6 3.3E+02 0.0071 20.2 5.5 51 55-107 159-209 (231)
88 PF07464 ApoLp-III: Apolipopho 22.5 2.7E+02 0.0058 19.2 5.3 34 58-91 37-71 (155)
89 PF12685 SpoIIIAH: SpoIIIAH-li 22.4 2.5E+02 0.0054 19.8 4.8 45 62-106 86-133 (196)
90 PRK06851 hypothetical protein; 22.2 2E+02 0.0043 22.7 4.6 27 2-28 85-112 (367)
91 PF07371 DUF1490: Protein of u 22.1 1.7E+02 0.0036 18.5 3.4 23 86-108 55-77 (90)
92 PRK00083 frr ribosome recyclin 21.7 3E+02 0.0065 19.4 5.9 18 86-103 154-171 (185)
93 PRK05560 DNA gyrase subunit A; 21.5 4.8E+02 0.01 22.8 7.1 49 62-111 430-478 (805)
94 TIGR01061 parC_Gpos DNA topois 21.4 4.8E+02 0.01 22.6 7.0 49 62-111 427-475 (738)
95 KOG3156|consensus 21.2 3.4E+02 0.0075 20.0 5.4 46 49-94 103-148 (220)
96 PF05085 DUF685: Protein of un 20.9 3.8E+02 0.0082 20.3 5.8 37 43-91 53-90 (265)
97 TIGR01062 parC_Gneg DNA topois 20.9 4.7E+02 0.01 22.8 6.8 45 65-110 427-471 (735)
98 PF12699 phiKZ_IP: phiKZ-like 20.8 4E+02 0.0087 20.6 7.1 28 79-106 78-105 (339)
99 TIGR01063 gyrA DNA gyrase, A s 20.6 4.5E+02 0.0097 23.0 6.7 48 63-111 428-475 (800)
100 cd00520 RRF Ribosome recycling 20.6 3.1E+02 0.0067 19.2 5.9 35 68-105 103-137 (179)
101 PF13256 DUF4047: Domain of un 20.4 2.8E+02 0.006 18.6 5.3 37 51-87 53-89 (125)
102 PRK00888 ftsB cell division pr 20.2 2.5E+02 0.0054 17.9 4.4 23 62-84 48-70 (105)
103 PRK11337 DNA-binding transcrip 20.2 2.4E+02 0.0052 20.7 4.6 48 63-111 25-74 (292)
No 1
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=99.97 E-value=2e-30 Score=200.65 Aligned_cols=107 Identities=24% Similarity=0.455 Sum_probs=100.7
Q ss_pred CCCCCCCCCCCCCCCCcccHHHHHHHhhCCCCCcC-cHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHHHHhhC
Q psy2883 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKN-CQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKD 77 (112)
Q Consensus 1 a~TDs~~~~~~~~~~p~~~nl~~l~~~~~~~~~~~-~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~~l~~d 77 (112)
|+|||.++....|++|++|||++||++| ++. +++++ ++|+ ++++||+||+.|+|.|+++|+|||+||.++++|
T Consensus 289 a~TDs~~~~~~~~g~Pe~~nl~~i~~~~----~~~~~~~~i~~~~~~g~~~~g~~K~~lae~v~e~L~~irer~~~~~~~ 364 (398)
T PRK12283 289 MPTDPARVRRTDPGDPEKCPVWQLHQVY----SDEETKEWVQKGCRSAGIGCLECKQPVIDAILREQQPMRERAQKYEDD 364 (398)
T ss_pred CCCCCcccccCCCCCCCcCHHHHHHHHh----CCChHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 7899987666777999999999999999 444 68999 9999 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Q psy2883 78 KKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDY 111 (112)
Q Consensus 78 ~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl~~ 111 (112)
+++|++||++|++|||++|++||.+||++|||.|
T Consensus 365 ~~~~~~il~~G~~kA~~~a~~t~~~v~~~~g~~~ 398 (398)
T PRK12283 365 PSLVRAIVADGCEKARKVARETMRDVREAMGLSY 398 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999986
No 2
>PLN02886 aminoacyl-tRNA ligase
Probab=99.97 E-value=1.5e-29 Score=195.63 Aligned_cols=106 Identities=22% Similarity=0.351 Sum_probs=101.0
Q ss_pred CCCCCCC-CCCCCCCCCcccHHHHHHHhhCCCCCcCcHHHH-HHhHcCCChHHHHHHHHHHHHHhhHHHHHHHHHHhhCH
Q psy2883 1 MYTDPNH-LHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEI-SLYQGGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDK 78 (112)
Q Consensus 1 a~TDs~~-~~~~~~~~p~~~nl~~l~~~~~~~~~~~~~~~i-~~~~~~~~~~~~K~~lae~i~~~l~pirer~~~l~~d~ 78 (112)
|+|||.+ +.+++|++|+++|++.+|.+| ++.+++++ ++|. +++|++||+.|+|.|+++|+|||+||+++++|+
T Consensus 279 a~TD~~~~i~~~~p~~p~v~nl~~i~~~~----~~~~~eei~~~~~-~~~~g~~K~~Lae~I~~~L~Pirer~~~l~~d~ 353 (389)
T PLN02886 279 CKTDSFPGLEFDNPERPECNNLLSIYQLV----TGKTKEEVLAECG-DMRWGDFKPLLTDALIEHLSPIQVRYEEIMSDP 353 (389)
T ss_pred CCCCCCCCccCCCCCCcccccHHHHHHHc----cCCCHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 7899995 899999999999999999999 77899999 9997 778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Q psy2883 79 KYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDY 111 (112)
Q Consensus 79 ~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl~~ 111 (112)
+||++||++|++|||++|++||++||++|||..
T Consensus 354 ~~l~~iL~~Ga~kAr~~A~~tl~~vr~~~Gl~~ 386 (389)
T PLN02886 354 SYLDSVLKEGADAAAEIADRTLANVYQAMGFVQ 386 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999964
No 3
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=99.96 E-value=1.2e-28 Score=192.24 Aligned_cols=106 Identities=24% Similarity=0.348 Sum_probs=97.7
Q ss_pred CCCCCCCCCCCCCCCCcccHHHHHHHhhCCCCCcCcHHHH-HHhHcCCChHHHHHHHHHHHHHhhHHHHHHHHHHhhCHH
Q psy2883 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEI-SLYQGGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKK 79 (112)
Q Consensus 1 a~TDs~~~~~~~~~~p~~~nl~~l~~~~~~~~~~~~~~~i-~~~~~~~~~~~~K~~lae~i~~~l~pirer~~~l~~d~~ 79 (112)
|+|||.+ ..++++|++|||++||++|. +..+++++ ++|.++++|++||+.|+|.|+++|+|||+||++|++|++
T Consensus 227 A~TDs~~--~~~~~~pe~snLl~i~~~~~---~~~~~eel~~~~~~g~~~g~~K~~Lae~i~~~L~PiRer~~~l~~d~~ 301 (431)
T PRK12284 227 IVTDSRA--PGEPKDTEGSALFQLYQAFA---TPEETAAFRQALADGIGWGDAKQRLFERIDRELAPMRERYEALIARPA 301 (431)
T ss_pred CCCCCCC--CCCCCCCCcchHHHHHHHhC---CcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 7899875 35689999999999999994 23678999 999855999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Q psy2883 80 YIQDILKIGSEKAQEEAEKTLKRIKNAMNIDY 111 (112)
Q Consensus 80 ~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl~~ 111 (112)
+|++||.+|++|||++|++||++||++|||.+
T Consensus 302 ~l~~iL~~Ga~kAr~~A~~tl~~vr~~~Gl~~ 333 (431)
T PRK12284 302 DIEDILLAGAAKARRIATPFLAELREAVGLRS 333 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChh
Confidence 99999999999999999999999999999975
No 4
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=99.96 E-value=2e-28 Score=186.81 Aligned_cols=110 Identities=56% Similarity=0.956 Sum_probs=103.9
Q ss_pred CCCCCCCCCCCCCCCCcccHHHHHHHhhCCCCCcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHHHHhhCH
Q psy2883 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDK 78 (112)
Q Consensus 1 a~TDs~~~~~~~~~~p~~~nl~~l~~~~~~~~~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~~l~~d~ 78 (112)
|+|||.++.++++++|++||++.|+++|.. ++.+++++ ++|. +++++++||+.|++.|+++|+|+|+||+++++|+
T Consensus 221 A~td~~~~~~~~~~~~~~~~l~~~~~~f~~--~~~~~e~l~~~y~~g~~~~~dlK~~lae~i~~~l~pirer~~~~~~~~ 298 (333)
T PRK12282 221 MYTDPNHIRVEDPGKVEGNVVFTYLDAFDP--DKAEVAELKAHYQRGGLGDVKCKRYLEEVLQELLAPIRERRAEFAKDP 298 (333)
T ss_pred CcCCCCCccCCCCCCCCcChHHHHHHHhCC--CCchHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 689998788999999999999999999942 35789999 9998 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCC
Q psy2883 79 KYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDYF 112 (112)
Q Consensus 79 ~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl~~~ 112 (112)
++|++||..|++|||++|++||++||++|||.|+
T Consensus 299 ~~~~~vl~~G~~ka~~~A~~~~~~v~~~~g~~~~ 332 (333)
T PRK12282 299 GYVLEILKAGSEKAREVAAQTLSEVKDAMGLNYF 332 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCC
Confidence 9999999999999999999999999999999875
No 5
>KOG2713|consensus
Probab=99.96 E-value=1.5e-28 Score=182.07 Aligned_cols=106 Identities=22% Similarity=0.304 Sum_probs=101.6
Q ss_pred CCCCCC-CCCCCCCCCCcccHHHHHHHhhCCCCCcCcHHHH-HHhHcCCChHHHHHHHHHHHHHhhHHHHHHHHHHhhCH
Q psy2883 1 MYTDPN-HLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEI-SLYQGGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDK 78 (112)
Q Consensus 1 a~TDs~-~~~~~~~~~p~~~nl~~l~~~~~~~~~~~~~~~i-~~~~~~~~~~~~K~~lae~i~~~l~pirer~~~l~~d~ 78 (112)
|+||+. ++.||+.+|||++||++||+++ ++.+++++ +++. ++.+.+||..|||+|++.|+|||++|+++++++
T Consensus 239 a~TD~~~~vtYd~~~RpgvsNLlni~aaV----t~~s~eeV~~~~a-~~~~~~fK~~vaeAvie~L~PIr~~fee~~~~~ 313 (347)
T KOG2713|consen 239 AQTDNTSGVTYDPANRPGVSNLLNIYAAV----TGKSIEEVVEESA-NMSTADFKDNVAEAVIEHLAPIRTEFEELINEP 313 (347)
T ss_pred HhcccccceeeCCccccchhHHHHHHHHH----cCCCHHHHHHHhc-cCCHHHHHHHHHHHHHHHhccHHHHHHHHhcCH
Confidence 689988 4999999999999999999999 99999999 9887 788889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Q psy2883 79 KYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDY 111 (112)
Q Consensus 79 ~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl~~ 111 (112)
+||++||+.|++||++.|.+||.+||+.|||.-
T Consensus 314 ~~l~kvl~~GaekAre~A~~~l~~ik~~~Gf~~ 346 (347)
T KOG2713|consen 314 EYLDKVLEEGAEKARELAAKNLEEIKQLMGFLQ 346 (347)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999963
No 6
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=99.96 E-value=7.1e-28 Score=183.78 Aligned_cols=108 Identities=32% Similarity=0.461 Sum_probs=102.1
Q ss_pred CCCCCCC---CCCCCCCCCcccHHHHHHHhhCCCCCcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy2883 1 MYTDPNH---LHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRKQLS 75 (112)
Q Consensus 1 a~TDs~~---~~~~~~~~p~~~nl~~l~~~~~~~~~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~~l~ 75 (112)
|.||+.. +.++.+++|++||++.|+++| ++.+++++ ++|. |++++++||+.|++.|+++|+|||+||++++
T Consensus 221 a~td~~~~~~~~~~~~~~p~~~~l~~~~~~~----~~~~~eel~~~~~~g~~~~~~lK~~la~~i~~~l~pire~~~~~~ 296 (333)
T PRK00927 221 AVTDSERLREIRYDLPNKPEVSNLLTIYSAL----SGESIEELEAEYEAGGKGYGDFKKDLAEAVVEFLAPIRERYEELL 296 (333)
T ss_pred CCCCCCcccccccCCCCCCccccHHHHHHHh----CCCCHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899973 567899999999999999999 67899999 9999 8999999999999999999999999999999
Q ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCC
Q psy2883 76 KDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDYF 112 (112)
Q Consensus 76 ~d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl~~~ 112 (112)
+|+++|++||++|++|||++|++||++||++|||.++
T Consensus 297 ~~~~~~~~il~~G~~~a~~~a~~~l~~v~~~~g~~~~ 333 (333)
T PRK00927 297 ADPAYLDEILAEGAEKARAVASKTLKEVREAMGLLRK 333 (333)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999999999764
No 7
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=99.95 E-value=3.2e-27 Score=180.09 Aligned_cols=105 Identities=26% Similarity=0.377 Sum_probs=96.2
Q ss_pred CCCCCCCCCCCCCCCCcccHHHHHHHhhCCCCCcCcHHHH-HHhHcCCChHHHHHHHHHHHHHhhHHHHHHHHHHhhCHH
Q psy2883 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEI-SLYQGGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKK 79 (112)
Q Consensus 1 a~TDs~~~~~~~~~~p~~~nl~~l~~~~~~~~~~~~~~~i-~~~~~~~~~~~~K~~lae~i~~~l~pirer~~~l~~d~~ 79 (112)
|+||+.+ .+.+++|++||++.|+++|.. ..+++++ ++|..+++|++||+.|++.|+++|+|||+||+++++|++
T Consensus 227 a~Td~~~--~~~~~~p~~~~l~~i~~~~~~---~~~~eei~~~y~~~~~~~~~K~~lae~i~~~l~pire~~~~~~~~~~ 301 (332)
T PRK12556 227 IKTDSSL--PNEPKDPETSALFTIYKEFAT---EEEVQSMREKYETGIGWGDVKKELFRVVDRELAGPREKYAMYMNEPS 301 (332)
T ss_pred hccCCCc--ccCCCCcchhHHHHHHHHHCC---chhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 6899866 456899999999999999942 2578999 999756889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC
Q psy2883 80 YIQDILKIGSEKAQEEAEKTLKRIKNAMNID 110 (112)
Q Consensus 80 ~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl~ 110 (112)
+|++||++|++|||++|++||++||++|||.
T Consensus 302 ~~~~il~~G~~kA~~~A~~tl~~v~~~~g~~ 332 (332)
T PRK12556 302 LLDEALEKGAERAREIAKPNLAEIKKAIGFE 332 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999999999999983
No 8
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=99.92 E-value=1.6e-24 Score=165.12 Aligned_cols=107 Identities=29% Similarity=0.351 Sum_probs=96.2
Q ss_pred CCCCCCC-CCCCCCCCCcccHHHHHHHhhCCCC-CcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy2883 1 MYTDPNH-LHISDPGKVDGNPVFTYLDQFGTDK-KKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSK 76 (112)
Q Consensus 1 a~TDs~~-~~~~~~~~p~~~nl~~l~~~~~~~~-~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~~l~~ 76 (112)
|+|||.+ +.++++++||++|++.+|.++..-. .+.+++++ ++|. ++++|++||+.|+|.|+++|+|||+||+++++
T Consensus 218 a~td~~~~~~~~~~~~~g~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~lK~~lae~i~~~l~pirer~~~~~~ 297 (328)
T TIGR00233 218 AATDGGRVTLFEHREKGGVPNLLVIYQYLSFFLIDDDKLKEIYEKYKSGKLLYGELKKALIEVLQEFLKEIQERRAEIAE 297 (328)
T ss_pred cCCCCCCCcccCcCCCCCCchHHHHHHHhhccCCCcchHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899985 8899999999998888888774321 13457899 9998 88999999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q psy2883 77 DKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNI 109 (112)
Q Consensus 77 d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl 109 (112)
| +|+++|..|+++|+++|++||.+||++|||
T Consensus 298 ~--~~~~~l~~g~~~a~~~a~~~l~~v~~~~g~ 328 (328)
T TIGR00233 298 E--ILDKILEPGAKKARETANKTLADVYKAMGL 328 (328)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7 999999999999999999999999999997
No 9
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=2.6e-21 Score=146.18 Aligned_cols=88 Identities=35% Similarity=0.519 Sum_probs=81.0
Q ss_pred CCCCC-CCCCCCCCCCCcccHHHHHHHhhCCCCCcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHHHHhhC
Q psy2883 1 MYTDP-NHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKD 77 (112)
Q Consensus 1 a~TDs-~~~~~~~~~~p~~~nl~~l~~~~~~~~~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~~l~~d 77 (112)
|+||| ..+.++++|+|++||+|.||++|+. +.+.+++ ++|+ |+.+||+||+.|+|.|+++|+|||+||+++++|
T Consensus 224 ~~td~~~~~~~~~~g~Pe~~~l~~~~~~~~~---~~~~~ei~~~~~~G~~~~ge~K~~lae~i~~fL~~iqer~~~~~~~ 300 (314)
T COG0180 224 AATDGPTLIEYRKGGKPEVCNLFEIYSAFFE---DDSILEIEAEYRGGELGCGECKKELAEAIQEFLKPIQERREELRED 300 (314)
T ss_pred hccCCCCccccCCCCCCCcchHHHHHHHhcC---CCcHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 68999 4588888999999999999999942 5788899 9999 789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy2883 78 KKYIQDILKIGSEK 91 (112)
Q Consensus 78 ~~~l~~il~~Ga~k 91 (112)
++++++||.+|++|
T Consensus 301 ~~~l~~il~~g~~k 314 (314)
T COG0180 301 PAYLDDILRKGAEK 314 (314)
T ss_pred HHHHHHHHhccCCC
Confidence 99999999999864
No 10
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=99.44 E-value=6.6e-13 Score=102.85 Aligned_cols=84 Identities=23% Similarity=0.154 Sum_probs=70.9
Q ss_pred CCCCCCC-C--CCCCCCCCcccHHHHHHHhhCCCCCcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy2883 1 MYTDPNH-L--HISDPGKVDGNPVFTYLDQFGTDKKKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRKQLS 75 (112)
Q Consensus 1 a~TDs~~-~--~~~~~~~p~~~nl~~l~~~~~~~~~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~~l~ 75 (112)
|+||+.. + ....+++|++|++++|+.+|... ++++++++ ++|. |+++||+||+.|++.|+++|+|+|+||+++.
T Consensus 277 A~Td~~~t~~~~~~~~g~p~~~~v~~~l~~~~~~-~d~~~eei~~~y~~g~~~~g~~K~~lae~i~~~l~~~~er~~~~~ 355 (368)
T PRK12285 277 ALTGGRATLEEQRKLGGEPDECVVYELLLYHLEE-DDKELKEIYEECRSGELLCGECKKEAAEKIAEFLKEHQEKREEAR 355 (368)
T ss_pred CcCCCCcccccccccCCCCCcchHHHHHHHHhcC-CCccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899874 2 34458999999999999999654 56799999 9998 8899999999999999999999999999988
Q ss_pred hCHHHHHHHHHHH
Q psy2883 76 KDKKYIQDILKIG 88 (112)
Q Consensus 76 ~d~~~l~~il~~G 88 (112)
. .|++.+..+
T Consensus 356 ~---~~~~~~~~~ 365 (368)
T PRK12285 356 E---ILEKYLYDG 365 (368)
T ss_pred H---HHHHhhccc
Confidence 4 676665543
No 11
>PLN02486 aminoacyl-tRNA ligase
Probab=99.25 E-value=3.8e-11 Score=93.48 Aligned_cols=81 Identities=17% Similarity=0.250 Sum_probs=66.8
Q ss_pred CCCCCCC---CCCCCCCCCcccHHHHHHHhhCCCCCcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy2883 1 MYTDPNH---LHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRKQLS 75 (112)
Q Consensus 1 a~TDs~~---~~~~~~~~p~~~nl~~l~~~~~~~~~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~~l~ 75 (112)
|+||+.. .....+++|++|+++.|+.+|.. ++++++++ ++|. |+++|++||+.|++.|+++|.|+|+||+++.
T Consensus 292 A~t~~~~t~~~~~~~gg~p~v~~~~~~l~~f~~--dd~~~eei~~~y~~G~l~~ge~K~~lae~i~~~l~~~qerr~~~~ 369 (383)
T PLN02486 292 AFSGGQDTVEEHRELGANLEVDIPWKYLNFFLE--DDAELERIKKEYGSGRMLTGEVKKRLIEVLTEIVERHQRARAAVT 369 (383)
T ss_pred CCCCCCCcccccccCCCCCccchHHHHHHHHcC--CchHHHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788762 33456899999999999999953 34679999 9998 8899999999999999999999999999987
Q ss_pred hCHHHHHHHH
Q psy2883 76 KDKKYIQDIL 85 (112)
Q Consensus 76 ~d~~~l~~il 85 (112)
. +.|++.+
T Consensus 370 ~--~~~~~~~ 377 (383)
T PLN02486 370 D--EMVDAFM 377 (383)
T ss_pred H--HHHHHHh
Confidence 4 3555443
No 12
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=99.05 E-value=7.9e-10 Score=91.27 Aligned_cols=73 Identities=21% Similarity=0.342 Sum_probs=61.1
Q ss_pred CCCCCCC---CCCCCCCCC----cccHHHHHHHhhCCCC----------CcCcHHHH-HHhH-cCCChHHHHHHHHHHHH
Q psy2883 1 MYTDPNH---LHISDPGKV----DGNPVFTYLDQFGTDK----------KKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQ 61 (112)
Q Consensus 1 a~TDs~~---~~~~~~~~p----~~~nl~~l~~~~~~~~----------~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~ 61 (112)
|+|||.+ +..+++++| +.||++.|++++.-.. +..+++++ +.|. +++++++||+.|++.|+
T Consensus 248 A~td~~~~~~~~~~d~g~p~~~~e~npvl~i~~~~if~~~g~~~~i~~~~~~~~eele~~y~~g~l~~~dlK~~lae~l~ 327 (682)
T PTZ00348 248 AYCPRVKQSASEITDDGAPVATDDRNPVLDYFQCVVYARPGAVATIDGTTYATYEDLEQAFVSDEVSEEALKSCLIDEVN 327 (682)
T ss_pred CCCCCCcCcccccCCCCCccccCCCCcHHHHHHHHhccccchhcccCCcccCcHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 6899863 667888998 7899999999873110 12678999 9998 89999999999999999
Q ss_pred HhhHHHHHHHHH
Q psy2883 62 DFLFPIRIKRKQ 73 (112)
Q Consensus 62 ~~l~pirer~~~ 73 (112)
++|+|||++|++
T Consensus 328 ~~L~PIRe~~~~ 339 (682)
T PTZ00348 328 ALLEPVRQHFAS 339 (682)
T ss_pred HHHHHHHHHHHc
Confidence 999999999974
No 13
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=98.96 E-value=2.1e-09 Score=82.28 Aligned_cols=63 Identities=25% Similarity=0.372 Sum_probs=53.0
Q ss_pred CCCCCCcccHHHHHHHhhCCC----------------CCcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHH
Q psy2883 11 SDPGKVDGNPVFTYLDQFGTD----------------KKKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRK 72 (112)
Q Consensus 11 ~~~~~p~~~nl~~l~~~~~~~----------------~~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~ 72 (112)
.+++.|+.|+++.|++.|... -+..+++++ ++|. +++++++||+.|+++|+++|+|||+||+
T Consensus 242 t~~~~~~~n~v~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l~pir~~~~ 321 (329)
T PRK08560 242 CPPGEVEGNPVLEIAKYHIFPRYDPFVIERPEKYGGDLEYESYEELERDYAEGKLHPMDLKNAVAEYLIEILEPVREYLE 321 (329)
T ss_pred CCCCCcCCCcHHHHHHHHhhccccceEEechhhcCCCCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345778899999999998421 012578999 9998 8899999999999999999999999998
Q ss_pred H
Q psy2883 73 Q 73 (112)
Q Consensus 73 ~ 73 (112)
+
T Consensus 322 ~ 322 (329)
T PRK08560 322 E 322 (329)
T ss_pred C
Confidence 5
No 14
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=98.79 E-value=1.3e-08 Score=76.37 Aligned_cols=59 Identities=31% Similarity=0.392 Sum_probs=50.2
Q ss_pred CCCCCCC-CCCCCCCCCcccHHHHHHHhhCCCCCcCcHHHH---HHhH-cCCChHHHHHHHHHHHHHh
Q psy2883 1 MYTDPNH-LHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEI---SLYQ-GGLGDVTIKKYLIEVMQDF 63 (112)
Q Consensus 1 a~TDs~~-~~~~~~~~p~~~nl~~l~~~~~~~~~~~~~~~i---~~~~-~~~~~~~~K~~lae~i~~~ 63 (112)
|+|||.+ +.++.+++|++||++.||++| ++.+.+++ .+|. ++++|++||+.|+|.|+++
T Consensus 217 a~td~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~K~~lae~i~~~ 280 (280)
T cd00806 217 AATDGGRTEHRRDGGGPGVSNLVEIYSAF----FNDDDEELEEIDEYRSGGLGYGECKKLLAEAIQEF 280 (280)
T ss_pred ccCCCCCceecCCCCCCCcChHHHHHHHH----hCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhC
Confidence 6899986 889999999999999999999 44555555 4577 8899999999999999864
No 15
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=98.67 E-value=6.4e-08 Score=75.56 Aligned_cols=63 Identities=25% Similarity=0.410 Sum_probs=50.5
Q ss_pred CCCCCCCcccHHHHHHHhhCC----------------CCCcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHH
Q psy2883 10 ISDPGKVDGNPVFTYLDQFGT----------------DKKKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKR 71 (112)
Q Consensus 10 ~~~~~~p~~~nl~~l~~~~~~----------------~~~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~ 71 (112)
+.+|+.|+.|+++.|+..+.. .-+..+++++ ++|. +++++++||+.|++.|+++|+|||++|
T Consensus 284 ~t~p~~~~~npv~~~~~~~~~~~~~~~~I~r~~k~gg~~~~~~~eel~~~y~~g~l~p~dlK~~lae~i~~~L~PIRe~~ 363 (383)
T PTZ00126 284 YCPPGVIEGNPILAYFKSIVFPAFNSFTVLRKEKNGGDVTYTTYEELEKDYLSGALHPGDLKPALAKYLNLMLQPVRDHF 363 (383)
T ss_pred cCCCCCCCCCcchhhhhhcccccccceeEeccccccCccCcCCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777888888886421 0023589999 9999 889999999999999999999999988
Q ss_pred H
Q psy2883 72 K 72 (112)
Q Consensus 72 ~ 72 (112)
.
T Consensus 364 ~ 364 (383)
T PTZ00126 364 Q 364 (383)
T ss_pred H
Confidence 6
No 16
>KOG2145|consensus
Probab=97.58 E-value=0.00017 Score=54.93 Aligned_cols=70 Identities=27% Similarity=0.372 Sum_probs=59.7
Q ss_pred CCCCCCcccHHHHHHHhhCCCCCcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHHHHhhCHHHHHHH
Q psy2883 11 SDPGKVDGNPVFTYLDQFGTDKKKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDI 84 (112)
Q Consensus 11 ~~~~~p~~~nl~~l~~~~~~~~~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~~l~~d~~~l~~i 84 (112)
.-+|+|.|..-+.+++.|..+ +...+++ ..|. |.+..|++|+.+.|++-++.+.+|+++++... +.|+..
T Consensus 318 e~GGn~dVDV~~~YLsFFldD--D~kLeq~r~~Y~~G~mltgEmKk~~ievLq~~V~~hQa~Rk~Vtd--e~ld~F 389 (397)
T KOG2145|consen 318 ELGGNPDVDVSFQYLSFFLDD--DDKLEQIRKDYTSGEMLTGEMKKLCIEVLQEFVSRHQAARKEVTD--ETLDAF 389 (397)
T ss_pred HhCCCCcceehHHHHHHHhcc--HHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHhccH--HHHHHH
Confidence 457899999999999998753 4689999 9998 88999999999999999999999999999774 245443
No 17
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=96.68 E-value=0.00027 Score=53.00 Aligned_cols=64 Identities=25% Similarity=0.342 Sum_probs=48.2
Q ss_pred CCCCCCC-CCCCCCCCCcccH-HHHHHHhhCCCCCc-CcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhH
Q psy2883 1 MYTDPNH-LHISDPGKVDGNP-VFTYLDQFGTDKKK-NCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLF 65 (112)
Q Consensus 1 a~TDs~~-~~~~~~~~p~~~n-l~~l~~~~~~~~~~-~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~ 65 (112)
|.||+.. +.+....+|.+++ ++.++..+... .. ...+++ ++|. +.+.++++|+.+++.++++|+
T Consensus 224 a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~g~l~~~~~K~~~~e~~~~~le 292 (292)
T PF00579_consen 224 AFCDPDRENPRLLKGRPFISPFLIERLEAFHGN-DDYRSLEELLADYVSGELHPGDLKKALAEALNEFLE 292 (292)
T ss_dssp SHTSTTSHHHHHHHHHHTHHHHHHHHHHHHHHH-HHESHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HhhCCCcccccccccCCCCCHHHHHHHHHhcCC-cchHHHHHHHHHHccCCcChHHHHHHHHHHHHHhhC
Confidence 3566654 4445566788888 88888887322 11 246899 9999 889999999999999999875
No 18
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.19 E-value=0.0059 Score=45.60 Aligned_cols=41 Identities=20% Similarity=0.104 Sum_probs=34.2
Q ss_pred cccHHHHHHHhhCCCCCcCcHHHH-HHhH-cCCChHHHHHHHHHHHHH
Q psy2883 17 DGNPVFTYLDQFGTDKKKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQD 62 (112)
Q Consensus 17 ~~~nl~~l~~~~~~~~~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~ 62 (112)
++++++.++..+ +..+++++ ++|. +.. ++++|+.|++.|++
T Consensus 226 ~v~~~l~~~~~~----~~~~~eel~~~~~~~~~-~~~~K~~la~~i~~ 268 (269)
T cd00805 226 DVLEFLKLFTFL----DYEEIEELEEEHAEGPL-PRDAKKALAEELTK 268 (269)
T ss_pred HHHHHHHHHHcC----CHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHh
Confidence 567777777776 66789999 9998 555 99999999999985
No 19
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=95.76 E-value=0.011 Score=46.73 Aligned_cols=50 Identities=16% Similarity=0.069 Sum_probs=39.9
Q ss_pred CCcccHHHHHHHhhCCCCCcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHH
Q psy2883 15 KVDGNPVFTYLDQFGTDKKKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRI 69 (112)
Q Consensus 15 ~p~~~nl~~l~~~~~~~~~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pire 69 (112)
+|.+++++.++..+ +.++++++ ++|. +. .++++|+.||+.|+.++....+
T Consensus 262 D~~v~~~l~~~t~~----~~~ei~~l~~~~~~g~-~~~~~Kk~LA~~v~~~lhg~~~ 313 (408)
T PRK05912 262 DADVWRYLKLLTFL----SLEEIEELEEELAEGP-NPREAKKVLAEEITALVHGEEA 313 (408)
T ss_pred hHHHHHHHHHHhcC----CHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHCCHHH
Confidence 45566777766665 66789999 9997 55 8899999999999999987654
No 20
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=95.48 E-value=0.17 Score=42.71 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=48.1
Q ss_pred CCCCCCCcccHHHHHHHhhCCCC---------------CcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHH
Q psy2883 10 ISDPGKVDGNPVFTYLDQFGTDK---------------KKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRK 72 (112)
Q Consensus 10 ~~~~~~p~~~nl~~l~~~~~~~~---------------~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~ 72 (112)
|.+|+. +.|.++.|...+.... +=.+.+++ +.|. +.+--.++|..+++.+++.|+|+|+.+.
T Consensus 583 ~Cpp~~-~~Npvl~~~~y~~~~~~~~~i~R~e~~Gg~~~y~s~eeL~~dy~~g~lhP~DLK~av~~~l~~~l~pvr~~~~ 661 (682)
T PTZ00348 583 YSAPNE-EANPVISVAQHLLAQQGALSIERGEANGGNVAYNTPEALVADCGSGALHPADLKAAVSQLLLDRSAAARALLS 661 (682)
T ss_pred CCCCCC-CCCcHHHHHHHHhcCCCeEEEecccccCCCeeeCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555543 4477888887764321 11368899 9999 8888899999999999999999999885
No 21
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=95.16 E-value=0.048 Score=40.90 Aligned_cols=42 Identities=21% Similarity=0.115 Sum_probs=31.1
Q ss_pred ccHHHHHHHhhCCCCCcCcHHHH-H---HhHcCCChHHHHHHHHHHHHHh
Q psy2883 18 GNPVFTYLDQFGTDKKKNCQYEI-S---LYQGGLGDVTIKKYLIEVMQDF 63 (112)
Q Consensus 18 ~~nl~~l~~~~~~~~~~~~~~~i-~---~~~~~~~~~~~K~~lae~i~~~ 63 (112)
.++++.++++| +..+.+++ + ++..+.++++||+.||+.|+++
T Consensus 228 d~~v~~~~~~~----t~~~~~ei~~i~~~~~~~~~~~~~K~~La~~i~~~ 273 (273)
T cd00395 228 DSDVINILKYF----TFLSKEEIERLEQEQYEAPGYRVAQKTLAEEVTKT 273 (273)
T ss_pred HhHHHHHHHHH----cCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 58889999999 55556666 5 3333456789999999999863
No 22
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=94.28 E-value=0.11 Score=41.21 Aligned_cols=53 Identities=19% Similarity=0.181 Sum_probs=40.7
Q ss_pred cHHHHHHHhhCCCCCcCcHHHH-HHhHcCCChHHHHHHHHHHHHHhhHHHHHHHH
Q psy2883 19 NPVFTYLDQFGTDKKKNCQYEI-SLYQGGLGDVTIKKYLIEVMQDFLFPIRIKRK 72 (112)
Q Consensus 19 ~nl~~l~~~~~~~~~~~~~~~i-~~~~~~~~~~~~K~~lae~i~~~l~pirer~~ 72 (112)
+.++.++.+|... +.++++++ +.|..+..++++|+.||+.|++++-+.++...
T Consensus 261 ~~v~~~l~~~t~l-~~~ei~~l~~~~~~~~~~~~~Kk~LA~~v~~~vhg~~~~~~ 314 (410)
T PRK13354 261 RDVVKYLKLFTDL-SPDEIDELEAQLETEPNPRDAKKVLAEEITKFVHGEEAAEE 314 (410)
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHCCHHHHHH
Confidence 4557788888544 46788899 88883334889999999999999988776443
No 23
>KOG2144|consensus
Probab=94.21 E-value=0.12 Score=39.57 Aligned_cols=40 Identities=28% Similarity=0.351 Sum_probs=36.0
Q ss_pred cHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy2883 36 CQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRKQLS 75 (112)
Q Consensus 36 ~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~~l~ 75 (112)
+.+++ .+|. +.+.-++||+.|+.+|...|.|||+.++.+-
T Consensus 294 syed~e~~y~~~~lhPgDLK~~l~~alN~lL~~ir~~~~~~~ 335 (360)
T KOG2144|consen 294 SYEDIEKDYEEGELHPGDLKKGLEKALNELLQPIREEFSNWP 335 (360)
T ss_pred HHHHHHHHHHhCCcChHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 56799 9998 8899999999999999999999999988644
No 24
>PF09551 Spore_II_R: Stage II sporulation protein R (spore_II_R); InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=73.39 E-value=23 Score=23.90 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2883 49 DVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKR 102 (112)
Q Consensus 49 ~~~~K~~lae~i~~~l~pirer~~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~~ 102 (112)
...+|..+-|.|++.|.|.=. -..+.++..+++..-....+++|+.+|.+
T Consensus 18 DQ~lKl~VRD~Vl~~l~~~~~----~~~~~~ea~~~i~~~~~~Ie~~A~~~l~~ 67 (130)
T PF09551_consen 18 DQALKLKVRDAVLEYLSPWLS----QAKSKEEAREVIRENLPEIEQIAEEVLAE 67 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHhc----cCCCHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 446888999999999987533 13466788888888888888899888875
No 25
>PF15605 Toxin_52: Putative toxin 52
Probab=67.40 E-value=11 Score=24.35 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=25.8
Q ss_pred HhhHHHHHHHHHHhhCHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHc
Q psy2883 62 DFLFPIRIKRKQLSKDKKYIQDILKI---------GSEKAQEEAEKTLKRIKNAM 107 (112)
Q Consensus 62 ~~l~pirer~~~l~~d~~~l~~il~~---------Ga~kA~~~A~~tl~~Vk~~~ 107 (112)
+++...+.-|.-|.+....|+..|.+ =.+.+...|..+|++|...+
T Consensus 47 dHlqEm~da~~GL~n~~~~le~~L~np~l~~~~r~~lq~~l~ea~~~l~kiE~~~ 101 (103)
T PF15605_consen 47 DHLQEMQDAYRGLVNRKRTLEGSLKNPNLSGRTRELLQSKLNEANNYLDKIEDFF 101 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444333 34667777888888887654
No 26
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=63.68 E-value=58 Score=24.11 Aligned_cols=45 Identities=20% Similarity=0.292 Sum_probs=35.1
Q ss_pred HHhhHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy2883 61 QDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAM 107 (112)
Q Consensus 61 ~~~l~pirer~~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~ 107 (112)
.+++.-++++.+.+. .+.+..++.....+.|+.-+.-+++||.++
T Consensus 96 ~dF~~~Lq~~Lk~V~--tde~k~~~~~ei~k~r~e~~~ml~evK~~~ 140 (230)
T PF03904_consen 96 NDFQDILQDELKDVD--TDELKNIAQNEIKKVREENKSMLQEVKQSH 140 (230)
T ss_pred HHHHHHHHHHHHhhc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777763 457889999999889999999999998764
No 27
>PF12057 DUF3538: Domain of unknown function (DUF3538); InterPro: IPR021925 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain is found associated with PF00240 from PFAM. This domain has a conserved SDL sequence motif.
Probab=61.91 E-value=5.4 Score=26.57 Aligned_cols=47 Identities=13% Similarity=0.271 Sum_probs=30.5
Q ss_pred HHHHhhHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy2883 59 VMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMN 108 (112)
Q Consensus 59 ~i~~~l~pirer~~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~G 108 (112)
.+-+.|.|+.+||.+++.+..-.+ . ++...-++.++++++.|-+++-
T Consensus 10 ~vq~RL~Pflery~~iL~~~~~~e-~--~~~~~~re~~QRi~d~VsEalh 56 (120)
T PF12057_consen 10 RVQERLQPFLERYHEILQEDPSFE-Y--ENNTQEREEDQRIFDLVSEALH 56 (120)
T ss_pred HHHHHHhHHHHHHHHHHhcCCCCC-C--CCCccchhhHhHHHHHHHHHHH
Confidence 456789999999999986532221 0 1222346677778877777653
No 28
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=61.80 E-value=29 Score=20.71 Aligned_cols=31 Identities=16% Similarity=-0.009 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Q psy2883 63 FLFPIRIKRKQLSKDKKYIQDILKIGSEKAQ 93 (112)
Q Consensus 63 ~l~pirer~~~l~~d~~~l~~il~~Ga~kA~ 93 (112)
....+.++...+++||+..++|-+.|.+.++
T Consensus 48 ~~~el~~~i~~ll~~~~~~~~ia~~a~~~v~ 78 (92)
T PF13524_consen 48 DPEELAEKIEYLLENPEERRRIAKNARERVL 78 (92)
T ss_pred CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 3556777888888999999999888887764
No 29
>TIGR02837 spore_II_R stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage II sporulation protein R.
Probab=61.60 E-value=48 Score=23.37 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=38.9
Q ss_pred ChHHHHHHHHHHHHHhhHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2883 48 GDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKR 102 (112)
Q Consensus 48 ~~~~~K~~lae~i~~~l~pirer~~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~~ 102 (112)
....+|..+-|.|++.+.|.=.. ..+.++-.+++.......+++|+++|.+
T Consensus 52 ~DQ~lKl~VRD~Vl~~~~~~~~~----~~s~~ea~~~i~~~l~~Ie~~a~~~l~~ 102 (168)
T TIGR02837 52 EDQALKLKVRDAVLKEIRPWLSG----LKSLEEARRVIRENLPEIERIAESVIKA 102 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc----CCCHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 35679999999999999875322 3456677788888888888888888765
No 30
>COG4904 Uncharacterized protein conserved in archaea [Function unknown]
Probab=58.98 E-value=59 Score=22.68 Aligned_cols=21 Identities=14% Similarity=0.099 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHcCcC
Q psy2883 90 EKAQEEAEKTLKRIKNAMNID 110 (112)
Q Consensus 90 ~kA~~~A~~tl~~Vk~~~Gl~ 110 (112)
+-++.++++||+..++--||.
T Consensus 62 k~~~~v~~k~~~~FYEnyGf~ 82 (174)
T COG4904 62 KAAKLVWRKTVEAFYENYGFS 82 (174)
T ss_pred HHHHHHHHHHHHHHHHHcCCC
Confidence 346789999999999999985
No 31
>PF13040 DUF3901: Protein of unknown function (DUF3901)
Probab=58.74 E-value=16 Score=19.61 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=17.2
Q ss_pred HHHHHHHHhhCHHHHHHHHHH
Q psy2883 67 IRIKRKQLSKDKKYIQDILKI 87 (112)
Q Consensus 67 irer~~~l~~d~~~l~~il~~ 87 (112)
+++...++++|+..+++|-..
T Consensus 12 V~eNK~ell~d~~~me~Ieer 32 (40)
T PF13040_consen 12 VRENKQELLNDKEAMEKIEER 32 (40)
T ss_pred HHHHHHHHHcCHHHHHHHHHH
Confidence 678888999999988887554
No 32
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=58.12 E-value=50 Score=24.48 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q psy2883 50 VTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQE 94 (112)
Q Consensus 50 ~~~K~~lae~i~~~l~pirer~~~l~~d~~~l~~il~~Ga~kA~~ 94 (112)
..+|.-..+++...+.|.++|.+++..+-..+++--..+.+|||.
T Consensus 85 ~~lk~f~~~L~~~lI~pLe~k~E~wkk~~~~ldKd~~k~~kk~R~ 129 (231)
T cd07643 85 TKLKQFTSALMDCLVNPLQEKIEEWKKVANQLDKDHAKEYKKARQ 129 (231)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666667789999999999999988999999999999974
No 33
>PF15292 Treslin_N: Treslin N-terminus
Probab=57.03 E-value=46 Score=28.89 Aligned_cols=54 Identities=22% Similarity=0.275 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Q psy2883 53 KKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDY 111 (112)
Q Consensus 53 K~~lae~i~~~l~pirer~~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl~~ 111 (112)
...+.|.|.+.|..|- +..|+.||.+.|.+=-..=-....+||.+||..+|+..
T Consensus 541 ~eq~veEV~~lLR~is-----lt~Dp~yLa~FLeeIl~~Yi~sipk~L~~lY~sLg~~i 594 (803)
T PF15292_consen 541 MEQLVEEVTDLLRIIS-----LTEDPAYLARFLEEILPLYIDSIPKTLGELYHSLGTQI 594 (803)
T ss_pred HHHHHHHHHHHHHHhh-----cccChHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccch
Confidence 4556666666666554 77899999999966556666778899999999999854
No 34
>smart00807 AKAP_110 A-kinase anchor protein 110 kDa. This family consists of several mammalian protein kinase A anchoring protein 3 (PRKA3) or A-kinase anchor protein 110 kDa (AKAP 110) sequences. Agents that increase intracellular cAMP are potent stimulators of sperm motility. Anchoring inhibitor peptides, designed to disrupt the interaction of the cAMP-dependent protein kinase A (PKA) with A kinase-anchoring proteins (AKAPs), are potent inhibitors of sperm motility. PKA anchoring is a key biochemical mechanism controlling motility. AKAP110 shares compartments with both RI and RII isoforms of PKA and may function as a regulator of both motility- and head-associated functions such as capacitation and the acrosome reaction PUBMED:10319321.
Probab=56.81 E-value=42 Score=28.50 Aligned_cols=58 Identities=17% Similarity=0.351 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHc
Q psy2883 50 VTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQD----ILKIGSEKAQEEAEKTLKRIKNAM 107 (112)
Q Consensus 50 ~~~K~~lae~i~~~l~pirer~~~l~~d~~~l~~----il~~Ga~kA~~~A~~tl~~Vk~~~ 107 (112)
.+-|+.+.|+|-.+++.+..=---||.|.+.|.. ....|.++|..|-...|.+.+.+|
T Consensus 329 kHaKEvVSDLIDS~mkNLHnvTG~LMTDsdFVSAVKR~~F~hg~Q~AtdimdaML~kL~s~l 390 (851)
T smart00807 329 KHAKEVVSDLIDSFMKNLHNVTGVLMTDTDFVSAVKRNLFSHGSQKATDIMDAMLKKLYSVL 390 (851)
T ss_pred HHHHHHHHHHHHHHHHHhhccceeeecchHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence 3567888888888888888777788889888754 567899999999999999988765
No 35
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=56.68 E-value=47 Score=21.51 Aligned_cols=52 Identities=23% Similarity=0.309 Sum_probs=39.4
Q ss_pred HHHHHHHHhh-----HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC
Q psy2883 55 YLIEVMQDFL-----FPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNID 110 (112)
Q Consensus 55 ~lae~i~~~l-----~pirer~~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl~ 110 (112)
.+.+.|+..| +..|..|+-|. .|+-++..|.++...-.+..+..|+....|.
T Consensus 39 ~I~~~l~kRL~~~~~k~wr~~~KaL~----ll~yLl~nG~~~~~~~~~~~~~~I~~l~~f~ 95 (125)
T PF01417_consen 39 EIMDVLWKRLSKSDGKNWRHVYKALT----LLEYLLKNGSERFVDELRDHIDIIRELQDFQ 95 (125)
T ss_dssp HHHHHHHHHHHSSTSSGHHHHHHHHH----HHHHHHHHS-HHHHHHHHHTHHHHHGGGG--
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHH----HHHHHHHHCCHHHHHHHHHHHHHHhhcceee
Confidence 4677777777 34667777766 7999999999999999999999998877664
No 36
>PF14842 FliG_N: FliG N-terminal domain; PDB: 3HJL_A 3AJC_A 3USY_B.
Probab=55.55 E-value=46 Score=21.20 Aligned_cols=66 Identities=21% Similarity=0.312 Sum_probs=30.2
Q ss_pred HHHHHhhCCCCCcCcHHHH-HHhHcCCChHHHHHHHHHHHHHhhHH-HHHHHHHHhhCHHHHHHHHHH--HHHHHHH
Q psy2883 22 FTYLDQFGTDKKKNCQYEI-SLYQGGLGDVTIKKYLIEVMQDFLFP-IRIKRKQLSKDKKYIQDILKI--GSEKAQE 94 (112)
Q Consensus 22 ~~l~~~~~~~~~~~~~~~i-~~~~~~~~~~~~K~~lae~i~~~l~p-irer~~~l~~d~~~l~~il~~--Ga~kA~~ 94 (112)
-.+++.| +...++.| .... .++. .-....+.|++.|.. ++..-.-+....++++++|.. |.++|+.
T Consensus 24 a~vlk~l----~~~ei~~i~~~ma-~l~~--v~~~~~~~Vl~EF~~~~~~~~~~~~gg~~~~~~lL~~alg~~~a~~ 93 (108)
T PF14842_consen 24 AEVLKHL----DEEEIERISREMA-KLGS--VSPEEVEEVLEEFYDEIRAQGGIVSGGRDFARRLLEKALGEEKAKE 93 (108)
T ss_dssp HHHHHHS-----HHHHHHHHHHHH-T-------HHHHHHHHHHHHHHHHHTT---S-HHHHHHH-HHHHS---HHHH
T ss_pred HHHHccC----CHHHHHHHHHHHH-ccCC--CCHHHHHHHHHHHHHHHHHccccccChHHHHHHHHHHHCCHHHHHH
Confidence 3455666 55677777 6665 4444 224445555444444 444444445566788888865 4444433
No 37
>PF07730 HisKA_3: Histidine kinase; InterPro: IPR011712 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represetns the dimerisation and phosphoacceptor domain of a sub-family of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO.; GO: 0000155 two-component sensor activity, 0046983 protein dimerization activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane; PDB: 3GIE_B 3GIG_A 3EHJ_B 3EHH_B 3GIF_B 3EHF_B 3EHG_A.
Probab=53.61 E-value=39 Score=18.98 Aligned_cols=50 Identities=16% Similarity=0.280 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhh----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy2883 54 KYLIEVMQDFLFPIRIKRKQLSK----DKKYIQDILKIGSEKAQEEAEKTLKRIKNAM 107 (112)
Q Consensus 54 ~~lae~i~~~l~pirer~~~l~~----d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~ 107 (112)
..|-|.|...|.-+.-....+.. +++.+.. -.+.+++.++.++.++|..+
T Consensus 7 reLHD~v~q~L~~i~~~l~~~~~~~~~~~~~~~~----~l~~i~~~~~~~~~~~R~~~ 60 (68)
T PF07730_consen 7 RELHDGVGQSLTAIKMQLEALRRRLADDPEEARE----ELEEIRELLREALQELRRII 60 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhcCCHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777776666652 3444444 44448888899999998875
No 38
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=53.46 E-value=60 Score=21.09 Aligned_cols=8 Identities=25% Similarity=0.410 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q psy2883 92 AQEEAEKT 99 (112)
Q Consensus 92 A~~~A~~t 99 (112)
+++.+..|
T Consensus 68 sk~a~~~t 75 (104)
T COG4575 68 SKAAADAT 75 (104)
T ss_pred HHHHHHHH
Confidence 33333333
No 39
>COG3783 CybC Soluble cytochrome b562 [Energy production and conversion]
Probab=52.26 E-value=52 Score=21.14 Aligned_cols=44 Identities=20% Similarity=0.138 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2883 63 FLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNA 106 (112)
Q Consensus 63 ~l~pirer~~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~ 106 (112)
.++.+|+-|..|..--+..++.+++|.-.+-..|-+++..+|..
T Consensus 51 E~kdyrhGfd~li~~iD~a~klaqeGnl~eAKaaak~l~d~Rn~ 94 (100)
T COG3783 51 EMKDYRHGFDILIGQIDKADKLAQEGNLDEAKAAAKTLKDTRNT 94 (100)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 44568888888887777888899999999999999999988864
No 40
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=51.93 E-value=68 Score=25.62 Aligned_cols=42 Identities=2% Similarity=0.050 Sum_probs=34.6
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy2883 67 IRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMN 108 (112)
Q Consensus 67 irer~~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~G 108 (112)
+-+...++.+|.+.+++.|....+++|+.|.+-..++-+.+|
T Consensus 382 Li~~v~~~~~~r~~~~~~l~~~v~~~r~~~~~~~~~~~~~~~ 423 (426)
T PRK10017 382 LQAMVADTLGQLPALNARLAEAVSRERQTGMQMVQSVLERIG 423 (426)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556677778888888899999999999988888888877766
No 41
>PF05289 BLYB: Borrelia hemolysin accessory protein; InterPro: IPR007953 This entry represents the borrelial prophage-encoded protein BlyB. Originally BlyB and its partner, the membrane-bound protein BlyA, were thought to comprise a haemolysis system. It is now thought, however, that BlyA and BlyB function instead as a holin or holin-like system [].
Probab=49.87 E-value=46 Score=21.56 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHh
Q psy2883 51 TIKKYLIEVMQDFLFPIRIKRKQLS 75 (112)
Q Consensus 51 ~~K~~lae~i~~~l~pirer~~~l~ 75 (112)
.+-..++-.|...|+||.++...+.
T Consensus 57 rlE~~~t~tI~~~L~pin~KIn~~I 81 (105)
T PF05289_consen 57 RLENALTPTILNTLEPINEKINKLI 81 (105)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHH
Confidence 4566777889999999999999886
No 42
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=49.34 E-value=63 Score=21.34 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=41.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Q psy2883 55 YLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDY 111 (112)
Q Consensus 55 ~lae~i~~~l~pirer~~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl~~ 111 (112)
.+.+.|+..|.........+.+----|+=.|..|+++.-.-++..+..++....|.|
T Consensus 37 ~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~~~~~i~~L~~F~~ 93 (123)
T cd03571 37 EIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDARENLYIIRTLKDFQY 93 (123)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHhhcccee
Confidence 356666666655544444444444478999999999999999999999988877754
No 43
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=49.30 E-value=1.1e+02 Score=23.36 Aligned_cols=49 Identities=16% Similarity=0.153 Sum_probs=28.5
Q ss_pred HHHHHHHHhhHHHHH----HHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy2883 55 YLIEVMQDFLFPIRI----KRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAM 107 (112)
Q Consensus 55 ~lae~i~~~l~pire----r~~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~ 107 (112)
+|.|.|...|.-+.- .......+++.+++.++. +++.++..|++||..+
T Consensus 177 dLHDsv~q~L~~i~m~~~~~~~~~~~~~e~~~~~l~~----i~~~~~e~l~evR~~v 229 (365)
T COG4585 177 DLHDSVGQSLTAISMLLALLLLLADEDAEKAQEELKE----IEKLLREALQEVRALV 229 (365)
T ss_pred HHhhHHhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 444555555555552 333333444455555554 7778888888888765
No 44
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=45.59 E-value=38 Score=17.16 Aligned_cols=30 Identities=27% Similarity=0.274 Sum_probs=21.2
Q ss_pred CcHHHH-HHhH-cCCChHHHHHHHHHHHHHhh
Q psy2883 35 NCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFL 64 (112)
Q Consensus 35 ~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l 64 (112)
-++.++ +.|. -|+...--|..|.+.+.++|
T Consensus 4 l~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 4 LTVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp SHHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 467888 8887 66654445888888887764
No 45
>PF05716 AKAP_110: A-kinase anchor protein 110 kDa (AKAP 110); InterPro: IPR018292 This family consists of several mammalian protein kinase A anchoring protein 3 (PRKA3) or A-kinase anchor protein 110 kDa (AKAP 110) sequences. Agents that increase intracellular cAMP are potent stimulators of sperm motility. Anchoring inhibitor peptides, designed to disrupt the interaction of the cAMP-dependent protein kinase A (PKA) with A kinase-anchoring proteins (AKAPs), are potent inhibitors of sperm motility. PKA anchoring is a key biochemical mechanism controlling motility. AKAP110 shares compartments with both RI and RII isoforms of PKA and may function as a regulator of both motility- and head-associated functions such as capacitation and the acrosome reaction []. This entry represents a sub group of the A-kinase anschor 110kDa protein.
Probab=44.61 E-value=1.3e+02 Score=25.50 Aligned_cols=58 Identities=21% Similarity=0.340 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHc
Q psy2883 50 VTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQD----ILKIGSEKAQEEAEKTLKRIKNAM 107 (112)
Q Consensus 50 ~~~K~~lae~i~~~l~pirer~~~l~~d~~~l~~----il~~Ga~kA~~~A~~tl~~Vk~~~ 107 (112)
.+-|+.+.|+|-.+.+....=---||.|.+.|.. ....|.++|-+|-+.-|.+.+++|
T Consensus 158 kH~KevVSDLIDS~MkNLHnvTG~LMTDsDFVsaVKr~lF~~G~QkatdImeAMl~rL~~~l 219 (685)
T PF05716_consen 158 KHAKEVVSDLIDSCMKNLHNVTGVLMTDSDFVSAVKRNLFNHGSQKATDIMEAMLKRLYSAL 219 (685)
T ss_pred HHHHHHHHHHHHHHHHHHhhccceeecchHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 3466777888888888887777778899888754 567899999999999999988875
No 46
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=41.70 E-value=84 Score=19.79 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=19.6
Q ss_pred CChHHHHHHHHHHHHHhhHHHHHHHHHHhhCHHHHHHHHHH
Q psy2883 47 LGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKI 87 (112)
Q Consensus 47 ~~~~~~K~~lae~i~~~l~pirer~~~l~~d~~~l~~il~~ 87 (112)
++.++||.-+...+-.+|.. .+||+.|+++++.
T Consensus 24 Lsk~Elk~Ll~~Elp~~l~~--------~~d~~~vd~im~~ 56 (91)
T cd05024 24 LNRDDLQKLMEKEFSEFLKN--------QNDPMAVDKIMKD 56 (91)
T ss_pred CCHHHHHHHHHHHhHHHHcC--------CCCHHHHHHHHHH
Confidence 55656665544444444442 4588888888854
No 47
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=41.63 E-value=83 Score=20.94 Aligned_cols=42 Identities=14% Similarity=0.174 Sum_probs=28.2
Q ss_pred HhhHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy2883 62 DFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAM 107 (112)
Q Consensus 62 ~~l~pirer~~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~ 107 (112)
+.+..+++-++.+..| +.+ +..|+.-|-..++..+.++.+++
T Consensus 4 dt~~kmkeL~e~~~~D---~~K-~EKGNKAAGtRaRK~sleLeKLa 45 (123)
T PF07432_consen 4 DTFKKMKELLESFEAD---AEK-AEKGNKAAGTRARKASLELEKLA 45 (123)
T ss_pred HHHHHHHHHHHHHHHH---HHH-HHccchHHHHHHHHHHHHHHHHH
Confidence 4445555555555544 233 58888888888888888877665
No 48
>COG0114 FumC Fumarase [Energy production and conversion]
Probab=41.07 E-value=39 Score=27.32 Aligned_cols=55 Identities=20% Similarity=0.170 Sum_probs=40.0
Q ss_pred HHHHHHHhhHHHHHHHHHHhhCHHHHHHHH--HHHHHHHHHHH------HHHHHHHHHHcCcC
Q psy2883 56 LIEVMQDFLFPIRIKRKQLSKDKKYIQDIL--KIGSEKAQEEA------EKTLKRIKNAMNID 110 (112)
Q Consensus 56 lae~i~~~l~pirer~~~l~~d~~~l~~il--~~Ga~kA~~~A------~~tl~~Vk~~~Gl~ 110 (112)
.++..+.-|+|-++|.+++.++.--|--.| .-|.++|.++| ..||+++--.+|+.
T Consensus 382 f~~~ci~gie~n~~~i~~~l~~SlmLVTaLnp~IGYdkAa~IAK~A~keg~tlreaa~~~G~l 444 (462)
T COG0114 382 FADHCIVGIEPNEERIKELLERSLMLVTALNPHIGYDKAAKIAKKAHKEGTTLREAALELGLL 444 (462)
T ss_pred HHHHHhhccccCHHHHHHHHhhCchHHHhcccccchHHHHHHHHHHHHCCCcHHHHHHHcCCC
Confidence 556677778899999998886543343333 25999999999 45777877777774
No 49
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=40.70 E-value=87 Score=19.25 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2883 52 IKKYLIEVMQDFLFPIRIKRKQLSKD-KKYIQDILKIGSEKAQEEAEKTLKRIKN 105 (112)
Q Consensus 52 ~K~~lae~i~~~l~pirer~~~l~~d-~~~l~~il~~Ga~kA~~~A~~tl~~Vk~ 105 (112)
+...+++...+.....|++..+...+ .+.+.+......+++++.+..|=+-|++
T Consensus 17 l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e 71 (94)
T PF05957_consen 17 LARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRE 71 (94)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677777777777777776643 2455555555666666666666665554
No 50
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=40.57 E-value=74 Score=18.43 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=17.2
Q ss_pred HHhhHHHHHHHHHHhhCHHHHHHHHH
Q psy2883 61 QDFLFPIRIKRKQLSKDKKYIQDILK 86 (112)
Q Consensus 61 ~~~l~pirer~~~l~~d~~~l~~il~ 86 (112)
.......+++...+.+||++++++.+
T Consensus 37 ~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 37 KKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 34445566777777678888877655
No 51
>KOG0859|consensus
Probab=40.24 E-value=1.5e+02 Score=21.73 Aligned_cols=51 Identities=12% Similarity=0.148 Sum_probs=35.2
Q ss_pred HHH-HHhHcCCChHHHHHHHHHHHHHhhHH-HHHHHHHHhhCHHHHHHHHHHHHH
Q psy2883 38 YEI-SLYQGGLGDVTIKKYLIEVMQDFLFP-IRIKRKQLSKDKKYIQDILKIGSE 90 (112)
Q Consensus 38 ~~i-~~~~~~~~~~~~K~~lae~i~~~l~p-irer~~~l~~d~~~l~~il~~Ga~ 90 (112)
++| ++|...||-+ .-.++|-.+.+++.+ ..+....+++||+ ++++.+--++
T Consensus 81 e~Ik~~F~k~YG~~-a~ta~AysmN~EFs~vL~qqm~y~s~~p~-id~lskvkaq 133 (217)
T KOG0859|consen 81 ERIKEDFKKRYGGG-AHTAVAYSMNKEFSSVLKQQMQYCSEHPE-ISKLAKVKAQ 133 (217)
T ss_pred HHHHHHHHHHhccc-hhHHHHhHhHHHHHHHHHHHHHHHHcCcc-hhHHHHHHHH
Confidence 677 7775344432 346788888888876 5677788888987 8887665444
No 52
>PRK10509 bacterioferritin-associated ferredoxin; Provisional
Probab=37.99 E-value=57 Score=18.99 Aligned_cols=33 Identities=21% Similarity=0.114 Sum_probs=25.4
Q ss_pred CcHHHH-HHhHcCCChHHHHHHHHHHHHHhhHHH
Q psy2883 35 NCQYEI-SLYQGGLGDVTIKKYLIEVMQDFLFPI 67 (112)
Q Consensus 35 ~~~~~i-~~~~~~~~~~~~K~~lae~i~~~l~pi 67 (112)
.+++++ .....+.+||.|...+.+.|.+.+.+.
T Consensus 24 ~s~~~l~~~~~~g~~CG~C~~~i~~il~~~~~~~ 57 (64)
T PRK10509 24 QSFQQLRKFVPVGNQCGKCIRAAREVMQDELMQM 57 (64)
T ss_pred CCHHHHHHhcCCCCCccchHHHHHHHHHHHHHhc
Confidence 478888 666567789999999988887776643
No 53
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=37.42 E-value=2.3e+02 Score=23.16 Aligned_cols=57 Identities=14% Similarity=0.202 Sum_probs=35.7
Q ss_pred cccHHHHHHHhhCCCCCcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy2883 17 DGNPVFTYLDQFGTDKKKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRKQL 74 (112)
Q Consensus 17 ~~~nl~~l~~~~~~~~~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~~l 74 (112)
|+..+-.-.+-++...+....+.+ ...+ .++..| +...+.+.+.+++..+|++|.-+
T Consensus 224 GvD~iDTAisp~S~gtsqP~tEtmv~aL~gt~yDtg-ld~~~l~~~~~yf~~vrkkY~~~ 282 (472)
T COG5016 224 GVDGIDTAISPLSGGTSQPATETMVAALRGTGYDTG-LDLELLEEIAEYFREVRKKYKGL 282 (472)
T ss_pred CcchhhhhhccccCCCCCCcHHHHHHHhcCCCCCcc-ccHHHHHHHHHHHHHHHHHHhhc
Confidence 333343333445444233355667 7777 455432 66778888999999999999544
No 54
>PF02061 Lambda_CIII: Lambda Phage CIII; InterPro: IPR013056 Bacteriophage lambda regulatory protein CIII is a small protein that plays a role in stabilising the CII transcriptional activator, via a mechanism that is not yet fully understood [, ]. Stabilised CII activates CI, the gene for the repressor protein that prevents transcription of proteins required for lytic development. The central portion of the protein is well conserved and is both necessary and sufficient for the activity of the protein []. Comparative analysis of the CIII sequence in lambda, Bacteriophage HK022 and the lambdoid Enterobacteria phage P22 has led to the suggestion that this central region assumes an amphipathic alpha-helical structure []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=36.92 E-value=68 Score=17.39 Aligned_cols=32 Identities=9% Similarity=0.050 Sum_probs=23.4
Q ss_pred CChHHHHHHHHHHHHHhhHHHHHHHHHHhhCH
Q psy2883 47 LGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDK 78 (112)
Q Consensus 47 ~~~~~~K~~lae~i~~~l~pirer~~~l~~d~ 78 (112)
+||.++-+.|-|.|...|+.=..|.-++++.|
T Consensus 11 ~G~~ql~ESLLdrItRklr~gwKRl~~iLnQp 42 (45)
T PF02061_consen 11 MGCPQLSESLLDRITRKLRDGWKRLWDILNQP 42 (45)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 67877778888888877777777766666543
No 55
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=36.85 E-value=59 Score=16.24 Aligned_cols=30 Identities=20% Similarity=0.193 Sum_probs=21.3
Q ss_pred CcHHHH-HHhH-cCCChHHHHHHHHHHHHHhh
Q psy2883 35 NCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFL 64 (112)
Q Consensus 35 ~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l 64 (112)
-+..++ +.|. .|+...--|..|.+.+.+++
T Consensus 4 l~~~~Lk~~l~~~gl~~~G~K~~Lv~Rl~~~~ 35 (35)
T smart00513 4 LKVSELKDELKKRGLSTSGTKAELVDRLLEAL 35 (35)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHhC
Confidence 467788 8887 66665556888888877653
No 56
>PRK10548 flagellar biosynthesis protein FliT; Provisional
Probab=36.21 E-value=81 Score=20.85 Aligned_cols=29 Identities=10% Similarity=0.280 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy2883 79 KYIQDILKIGSEKAQEEAEKTLKRIKNAMN 108 (112)
Q Consensus 79 ~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~G 108 (112)
..|.+||.+-++ .|..++.-|++..+.||
T Consensus 66 ~lL~~IL~nda~-Ir~Llq~rl~eL~~li~ 94 (121)
T PRK10548 66 PMLRQILDNEAE-LKQLLQQRMDELSSLIG 94 (121)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 468899999888 89999999999988876
No 57
>PF11348 DUF3150: Protein of unknown function (DUF3150); InterPro: IPR021496 This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=35.56 E-value=1.1e+02 Score=22.82 Aligned_cols=60 Identities=12% Similarity=0.123 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhCH-HHHHHHHHHHHHH----HHHH--HHHHHHHHHHHcCcCC
Q psy2883 52 IKKYLIEVMQDFLFPIRIKRKQLSKDK-KYIQDILKIGSEK----AQEE--AEKTLKRIKNAMNIDY 111 (112)
Q Consensus 52 ~K~~lae~i~~~l~pirer~~~l~~d~-~~l~~il~~Ga~k----A~~~--A~~tl~~Vk~~~Gl~~ 111 (112)
.=...++.|.+.|.-|+..|.+...+- ...++.+.+-..+ +..+ +..+-+.|.+.++|.+
T Consensus 78 VP~~~~~~l~~~L~~i~~eF~~~k~~Fl~~Yd~~i~~w~~~~pew~~~Ir~~~~~~~~v~~r~~F~~ 144 (257)
T PF11348_consen 78 VPEDKAEELAEELEDIKTEFEQEKQDFLANYDQAIEEWIDRHPEWADIIRRAAPPAEDVRSRFSFSW 144 (257)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHhcCCCHHHHHhhcccee
Confidence 446678899999999999998877552 2234555544444 2222 3346677888888865
No 58
>PF06465 DUF1087: Domain of Unknown Function (DUF1087); InterPro: IPR009463 This is a group of proteins of unknown function.
Probab=34.67 E-value=97 Score=18.42 Aligned_cols=26 Identities=38% Similarity=0.548 Sum_probs=22.2
Q ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2883 76 KDKKYIQDILKIGSEKAQEEAEKTLK 101 (112)
Q Consensus 76 ~d~~~l~~il~~Ga~kA~~~A~~tl~ 101 (112)
.+|+|++++|+.-.+.-++.....|-
T Consensus 22 ~~~~yWe~LLr~~ye~~q~e~~~~LG 47 (66)
T PF06465_consen 22 TDPNYWEKLLRHRYEQQQEEEEKALG 47 (66)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999988888777764
No 59
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=34.23 E-value=56 Score=26.13 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHh
Q psy2883 54 KYLIEVMQDFLFPIRIKRKQLS 75 (112)
Q Consensus 54 ~~lae~i~~~l~pirer~~~l~ 75 (112)
+.||+.|-..|+.||+||+++-
T Consensus 235 ~~La~~Vd~lL~kir~KY~eyg 256 (404)
T PF08886_consen 235 ECLASAVDQLLAKIRKKYKEYG 256 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 7899999999999999999984
No 60
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=33.37 E-value=1.1e+02 Score=18.28 Aligned_cols=36 Identities=17% Similarity=0.110 Sum_probs=21.0
Q ss_pred CCChHHHHHHHHHHHHHhhHHHHHHHHHHhhCHHHHHHHHHHHHH
Q psy2883 46 GLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSE 90 (112)
Q Consensus 46 ~~~~~~~K~~lae~i~~~l~pirer~~~l~~d~~~l~~il~~Ga~ 90 (112)
..-.-++|+.|+|.+...+= ...|..|.++...-+.
T Consensus 8 e~tFtEyKKrL~e~l~~k~P---------~at~~~l~~lve~Rsd 43 (68)
T PF09164_consen 8 ENTFTEYKKRLAERLRAKLP---------DATPTELKELVEKRSD 43 (68)
T ss_dssp TS-HHHHHHHHHHHHHHH-T---------TS-HHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHCC---------CCCHHHHHHHHHHHhh
Confidence 44566799999998765543 2345566666555444
No 61
>TIGR01725 phge_HK97_gp10 phage protein, HK97 gp10 family. This model represents an uncharacterized, highly divergent bacteriophage family. The family includes gp10 from HK022 and HK97. It appears related to TIGR01635, a phage morphogenesis family believed to be involved in tail completion.
Probab=32.36 E-value=1.3e+02 Score=18.89 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHhhCHH--HHHHHHHHHHHHHHHHHHH
Q psy2883 64 LFPIRIKRKQLSKDKK--YIQDILKIGSEKAQEEAEK 98 (112)
Q Consensus 64 l~pirer~~~l~~d~~--~l~~il~~Ga~kA~~~A~~ 98 (112)
|..+.++.+.+..+-. .++++|..|++...+.+..
T Consensus 4 l~~l~~~l~~l~~~~~~~~~~~al~~~a~~~~~~~k~ 40 (119)
T TIGR01725 4 LDELLQKLEKLGKKVDKEKVRKALKAGANVIRAKLKS 40 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555443322 4777777777766555544
No 62
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=31.57 E-value=1.8e+02 Score=26.68 Aligned_cols=76 Identities=22% Similarity=0.368 Sum_probs=50.7
Q ss_pred CcccHHHHHHHhhCCCCCcCcHHHH-HHhHcCCChHHHHHHHHHHHHHhhHHHHHHHHHHhhCHHHHHHHHHH-------
Q psy2883 16 VDGNPVFTYLDQFGTDKKKNCQYEI-SLYQGGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKI------- 87 (112)
Q Consensus 16 p~~~nl~~l~~~~~~~~~~~~~~~i-~~~~~~~~~~~~K~~lae~i~~~l~pirer~~~l~~d~~~l~~il~~------- 87 (112)
|....+|+|+..| +..+...+ ..|+ ++ +|+.+.=++-+++..+++ +|.+.|.++|..
T Consensus 938 p~~~~ifdl~~~~----s~~~~s~is~~yK-nF----Lne~ViPvLEeCl~aL~~------nn~~~L~kaLA~FP~d~qW 1002 (1439)
T PF12252_consen 938 PDLEGIFDLQHRF----SGVEDSKISQEYK-NF----LNEKVIPVLEECLNALRE------NNMDMLQKALAAFPSDKQW 1002 (1439)
T ss_pred chHHhHHHHHHHh----hhhhhccccHHHH-HH----HHhccHHHHHHHHHHHHh------cCHHHHHHHHHhCCCcccc
Confidence 7778888888888 55566777 7776 43 677788888888877764 555666666643
Q ss_pred ---HHHHHHHHHHHHHHHHHHHc
Q psy2883 88 ---GSEKAQEEAEKTLKRIKNAM 107 (112)
Q Consensus 88 ---Ga~kA~~~A~~tl~~Vk~~~ 107 (112)
....| ..|..-|+-+|..+
T Consensus 1003 SaFNs~EA-~~AK~QMDaIKqmI 1024 (1439)
T PF12252_consen 1003 SAFNSEEA-RQAKAQMDAIKQMI 1024 (1439)
T ss_pred hhcCcHHH-HHHHHHHHHHHHHH
Confidence 12222 56677777777654
No 63
>KOG4727|consensus
Probab=30.85 E-value=1.1e+02 Score=21.91 Aligned_cols=41 Identities=10% Similarity=-0.030 Sum_probs=24.0
Q ss_pred CcHHHH-HHhH--cCCChHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy2883 35 NCQYEI-SLYQ--GGLGDVTIKKYLIEVMQDFLFPIRIKRKQLS 75 (112)
Q Consensus 35 ~~~~~i-~~~~--~~~~~~~~K~~lae~i~~~l~pirer~~~l~ 75 (112)
.+..++ ++|. ....+..+|++-.|.-+.....-++|+....
T Consensus 113 st~~qv~erf~~~k~k~~~~~ke~~vE~r~~e~qeee~rlkd~~ 156 (193)
T KOG4727|consen 113 STLDQVKERFEQNKKKMEEKQKEYDVEERLRETQEEEERLKDTR 156 (193)
T ss_pred hhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778 8885 3455667776666655555444444444443
No 64
>TIGR02809 phasin_3 phasin family protein. Members of this protein family are encoded in polyhydroxyalkanoic acid storage system regions in Vibrio, Photobacterium profundum SS9, Acinetobacter sp., Aeromonas hydrophila, and several species of Vibrio. Members appear distantly related to the phasin family proteins modeled by TIGR01841 and TIGR01985.
Probab=30.84 E-value=1.6e+02 Score=19.34 Aligned_cols=29 Identities=10% Similarity=0.109 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2883 77 DKKYIQDILKIGSEKAQEEAEKTLKRIKN 105 (112)
Q Consensus 77 d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~ 105 (112)
|++-|......-.+-++...++-++..++
T Consensus 58 D~~sl~sf~t~Q~e~l~~Lsqqm~eD~~k 86 (110)
T TIGR02809 58 DAQSLAAFNTQQLETLSKLSQQMMDDSKK 86 (110)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444455555554444443
No 65
>PHA01750 hypothetical protein
Probab=29.73 E-value=1.3e+02 Score=18.01 Aligned_cols=45 Identities=16% Similarity=0.252 Sum_probs=29.8
Q ss_pred cCcHHHH-HHhHcCCChHHHHHHHHHHHHHhhHHHHHHHHHHhhCHHH
Q psy2883 34 KNCQYEI-SLYQGGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKY 80 (112)
Q Consensus 34 ~~~~~~i-~~~~~~~~~~~~K~~lae~i~~~l~pirer~~~l~~d~~~ 80 (112)
-.++-.| +-|- .+. .-||.++-|.|...|...+....++....+.
T Consensus 15 aTtlFaIiqlYl-KIK-q~lkdAvkeIV~~ELdNL~~ei~~~kikqDn 60 (75)
T PHA01750 15 ATTLFAIIQLYL-KIK-QALKDAVKEIVNSELDNLKTEIEELKIKQDE 60 (75)
T ss_pred HHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3456666 6664 121 1388888888899999888888776643333
No 66
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=29.61 E-value=63 Score=25.83 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHh
Q psy2883 54 KYLIEVMQDFLFPIRIKRKQLS 75 (112)
Q Consensus 54 ~~lae~i~~~l~pirer~~~l~ 75 (112)
..||+.|-..|.-||+||.++-
T Consensus 232 e~lA~~Vd~~L~kir~KY~eYg 253 (403)
T TIGR02049 232 DALATAVDQVLSKTQKKYEEYG 253 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 7799999999999999999984
No 67
>PF06034 DUF919: Nucleopolyhedrovirus protein of unknown function (DUF919); InterPro: IPR009265 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf29. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several short baculovirus proteins of unknown function.
Probab=28.77 E-value=79 Score=18.55 Aligned_cols=22 Identities=32% Similarity=0.291 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhCHHHHHHHHHH
Q psy2883 66 PIRIKRKQLSKDKKYIQDILKI 87 (112)
Q Consensus 66 pirer~~~l~~d~~~l~~il~~ 87 (112)
.+.||...+.+||.+|.++-..
T Consensus 25 ~H~Ekl~kitK~p~El~~i~~k 46 (62)
T PF06034_consen 25 QHWEKLKKITKNPKELQEIEKK 46 (62)
T ss_pred HHHHHHHhccCCHHHHHHHHHH
Confidence 4778999999999888777544
No 68
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=28.50 E-value=3.2e+02 Score=23.34 Aligned_cols=42 Identities=14% Similarity=0.097 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q psy2883 64 LFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNI 109 (112)
Q Consensus 64 l~pirer~~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl 109 (112)
...+++.++++.++-.+++++|.+ -..++..-|.++++..|-
T Consensus 406 ~~k~~~e~~~l~~~i~~~~~~L~~----~~~~~~~el~~l~~kyg~ 447 (635)
T PRK09631 406 IDKNQKEIRILNKELKSVEKNLKS----IKGYAINFIDKLLAKYSK 447 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCC
Confidence 345778888888888899999988 667888999999999885
No 69
>PF09958 DUF2192: Uncharacterized protein conserved in archaea (DUF2192); InterPro: IPR018693 This family of various hypothetical archaeal proteins has no known function.
Probab=28.24 E-value=1.6e+02 Score=21.81 Aligned_cols=42 Identities=17% Similarity=0.136 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Q psy2883 66 PIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDY 111 (112)
Q Consensus 66 pirer~~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl~~ 111 (112)
++|+|.+-+. +-|.++|+. ..--|..+-..|.++++..|+.-
T Consensus 5 l~r~RI~va~---~l~~~il~~-~~~~R~~lv~~L~~~Y~~~gIeP 46 (231)
T PF09958_consen 5 LYRKRIEVAT---DLWSRILRG-EVLDREELVELLREVYEENGIEP 46 (231)
T ss_pred HHHHHHHHHH---HHHHHHHHh-ccCCHHHHHHHHHHHHHHcCCCc
Confidence 5666666665 478888888 55588899999999999998753
No 70
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=28.14 E-value=55 Score=24.37 Aligned_cols=39 Identities=10% Similarity=0.289 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhHH---HHHHHHHHhhCHHHHHHHHHHHHH
Q psy2883 52 IKKYLIEVMQDFLFP---IRIKRKQLSKDKKYIQDILKIGSE 90 (112)
Q Consensus 52 ~K~~lae~i~~~l~p---irer~~~l~~d~~~l~~il~~Ga~ 90 (112)
-.+.+.|....-+.| +=|||.++.+|+..|.+.+..|+-
T Consensus 118 a~~lf~elq~kGi~PIIAHPERn~~i~kn~~~lyeLid~ga~ 159 (254)
T COG4464 118 ADQLFFELQSKGIIPIIAHPERNRAIQKNPYLLYELIDKGAY 159 (254)
T ss_pred HHHHHHHHHHCCceeeeechhhHHHHHhChHHHHHHHhcccc
Confidence 346677777777777 468999999999999999999873
No 71
>COG5051 RPL36A Ribosomal protein L36E [Translation, ribosomal structure and biogenesis]
Probab=27.57 E-value=86 Score=19.83 Aligned_cols=37 Identities=24% Similarity=0.246 Sum_probs=22.7
Q ss_pred HhhHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy2883 62 DFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAM 107 (112)
Q Consensus 62 ~~l~pirer~~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~ 107 (112)
.-|+|.-.|--+|.. ..+..+||..|.+.|-..+.+.
T Consensus 48 aGlsPyErr~i~Lir---------ns~~krArKlakKRLGs~kRAk 84 (97)
T COG5051 48 AGLSPYERRVIELIR---------NSQDKRARKLAKKRLGSLKRAK 84 (97)
T ss_pred ccCCHHHHHHHHHHH---------hcccHHHHHHHHHHhhhHHHHH
Confidence 345666555544443 4567788888888776555543
No 72
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=27.48 E-value=4.2e+02 Score=23.10 Aligned_cols=17 Identities=12% Similarity=0.085 Sum_probs=13.6
Q ss_pred CCCCCcccHHHHHHHhh
Q psy2883 12 DPGKVDGNPVFTYLDQF 28 (112)
Q Consensus 12 ~~~~p~~~nl~~l~~~~ 28 (112)
.+|.||.++-+.+...+
T Consensus 481 ~~G~~g~S~a~~iA~~~ 497 (782)
T PRK00409 481 LIGIPGKSNAFEIAKRL 497 (782)
T ss_pred eeCCCCCcHHHHHHHHh
Confidence 36789999999987765
No 73
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=27.43 E-value=2.5e+02 Score=20.77 Aligned_cols=71 Identities=25% Similarity=0.345 Sum_probs=50.9
Q ss_pred cHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHHHHhh----CHHHHHHHHHHHHHHH------HHHHHHHHHHH
Q psy2883 36 CQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSK----DKKYIQDILKIGSEKA------QEEAEKTLKRI 103 (112)
Q Consensus 36 ~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~~l~~----d~~~l~~il~~Ga~kA------~~~A~~tl~~V 103 (112)
..+-| +..+ |-+.| =+|.--+|.+.+.|...++++..+.+ +.+.|++++...+... +-+-+.||..|
T Consensus 85 d~~tI~~alr~Gv~DY-LiKPf~~eRl~~aL~~y~~~r~~l~~~~~~sQ~~lD~l~~~~~k~~~~~~LPkGi~~~Tl~~i 163 (224)
T COG4565 85 DMETIKEALRYGVVDY-LIKPFTFERLQQALTRYRQKRHALESHQQLSQKELDQLFNIQSKEQPPDDLPKGLDELTLQKV 163 (224)
T ss_pred hHHHHHHHHhcCchhh-eecceeHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHhccccccCcccCCCCcCHHHHHHH
Confidence 44556 6566 44555 37899999999999999999999987 4678999988654421 12346677777
Q ss_pred HHHc
Q psy2883 104 KNAM 107 (112)
Q Consensus 104 k~~~ 107 (112)
++.+
T Consensus 164 ~~~~ 167 (224)
T COG4565 164 REAL 167 (224)
T ss_pred HHHH
Confidence 7665
No 74
>KOG3046|consensus
Probab=27.35 E-value=1.1e+02 Score=21.08 Aligned_cols=30 Identities=10% Similarity=-0.026 Sum_probs=22.9
Q ss_pred CChHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy2883 47 LGDVTIKKYLIEVMQDFLFPIRIKRKQLSK 76 (112)
Q Consensus 47 ~~~~~~K~~lae~i~~~l~pirer~~~l~~ 76 (112)
.+..+|++.|++.+.+.+=..-..|..+++
T Consensus 109 ~~~K~fr~~l~eEl~q~fPe~~~~yr~Ir~ 138 (147)
T KOG3046|consen 109 DAFKKFRKHLAEELSQEFPELVDPYRSIRA 138 (147)
T ss_pred HHHHHHHHHHHHHHHHHChHHHHHHHHHHh
Confidence 357778899999888888777777776663
No 75
>COG4879 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.21 E-value=2.5e+02 Score=20.55 Aligned_cols=40 Identities=20% Similarity=0.177 Sum_probs=30.5
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCcC
Q psy2883 67 IRIKRKQLSKDKKYIQDILKIGSEK-AQEEAEKTLKRIKNAMNID 110 (112)
Q Consensus 67 irer~~~l~~d~~~l~~il~~Ga~k-A~~~A~~tl~~Vk~~~Gl~ 110 (112)
+|+|.+-++ +.|+. +-+|.+. .|+.+-..|+.|+..=|+.
T Consensus 8 ~r~RI~~l~---d~wer-~l~~we~lsRe~~ieilk~vY~~~~Ik 48 (243)
T COG4879 8 HRDRIEALL---DLWER-VLNGWETLSRESLIEILKTVYKERGIK 48 (243)
T ss_pred HHHHHHHHH---HHHHH-HHHHHHhhhHHHHHHHHHHHHHHcCCC
Confidence 788888877 34444 4566776 9999999999999887763
No 76
>PF14562 Endonuc_BglI: Restriction endonuclease BglI; PDB: 1DMU_A.
Probab=26.80 E-value=2.7e+02 Score=21.00 Aligned_cols=39 Identities=8% Similarity=0.054 Sum_probs=26.5
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2883 67 IRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKN 105 (112)
Q Consensus 67 irer~~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~ 105 (112)
-+..++.+..|++.+.++-+.|-+-..++-..++.+++.
T Consensus 8 Y~~~r~yl~~N~~~li~~E~y~l~~~~n~i~~n~eei~a 46 (292)
T PF14562_consen 8 YMQNRQYLIQNYNQLINMEQYYLNEMFNSIHQNEEEIHA 46 (292)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667777777777777777777777777777766654
No 77
>PF11803 UXS1_N: UDP-glucuronate decarboxylase N-terminal; InterPro: IPR021761 The N terminus of the UDP-glucuronate decarboxylases may be involved in localisation to the perinuclear Golgi membrane. ; GO: 0048040 UDP-glucuronate decarboxylase activity
Probab=26.47 E-value=86 Score=19.19 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy2883 50 VTIKKYLIEVMQDFLFPIRIKRKQLSK 76 (112)
Q Consensus 50 ~~~K~~lae~i~~~l~pirer~~~l~~ 76 (112)
|++| +-..+-+..+|.|++.+.+..
T Consensus 47 Ge~K--ie~kiee~v~plreki~dle~ 71 (78)
T PF11803_consen 47 GELK--IEQKIEEAVAPLREKIRDLEK 71 (78)
T ss_pred cchh--HHHHHHHHHhHHHHHHHHHHH
Confidence 5677 668888999999999988763
No 78
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=26.04 E-value=67 Score=17.31 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy2883 79 KYIQDILKIGSEKAQEEAEKTLK 101 (112)
Q Consensus 79 ~~l~~il~~Ga~kA~~~A~~tl~ 101 (112)
..|++++..|...-+.-|+.-|.
T Consensus 20 ~lL~evl~~~~~~q~~eA~~LL~ 42 (44)
T TIGR03504 20 ELLEEVIEEGDEAQRQEARALLA 42 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHh
Confidence 35666666666666666655544
No 79
>COG4008 Predicted metal-binding transcription factor [Transcription]
Probab=25.93 E-value=1e+02 Score=20.91 Aligned_cols=27 Identities=22% Similarity=0.139 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy2883 49 DVTIKKYLIEVMQDFLFPIRIKRKQLS 75 (112)
Q Consensus 49 ~~~~K~~lae~i~~~l~pirer~~~l~ 75 (112)
|-++|+.||+.|+..-+|.-+.-+-+.
T Consensus 96 YM~lKkqLae~il~~s~~~~e~v~v~a 122 (153)
T COG4008 96 YMELKKQLAEYILGHSEPPVEEVEVLA 122 (153)
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 346899999999998888777665544
No 80
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=25.00 E-value=4.6e+02 Score=22.80 Aligned_cols=16 Identities=13% Similarity=0.247 Sum_probs=13.1
Q ss_pred CCCCcccHHHHHHHhh
Q psy2883 13 PGKVDGNPVFTYLDQF 28 (112)
Q Consensus 13 ~~~p~~~nl~~l~~~~ 28 (112)
+|.||.++-+.+...+
T Consensus 477 ~G~~g~S~a~~iA~~~ 492 (771)
T TIGR01069 477 KGIPGESYAFEIAQRY 492 (771)
T ss_pred CCCCCCcHHHHHHHHh
Confidence 5788999999887765
No 81
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=24.86 E-value=2e+02 Score=20.39 Aligned_cols=35 Identities=20% Similarity=0.183 Sum_probs=18.9
Q ss_pred HHhhHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHH
Q psy2883 61 QDFLFPIRIKRKQLSKD-KKYIQDILKIGSEKAQEE 95 (112)
Q Consensus 61 ~~~l~pirer~~~l~~d-~~~l~~il~~Ga~kA~~~ 95 (112)
-+-+..=+++-.++..+ ...-++|+.+..++|..+
T Consensus 14 ~~~~eeA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i 49 (198)
T PRK01558 14 KDGLEEAERLANEIILEAKEEAEEIIAKAEEEAKEL 49 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666665544 245666666655554444
No 82
>PRK10404 hypothetical protein; Provisional
Probab=23.73 E-value=2e+02 Score=18.27 Aligned_cols=51 Identities=6% Similarity=0.006 Sum_probs=30.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2883 55 YLIEVMQDFLFPIRIKRKQLSKDK-KYIQDILKIGSEKAQEEAEKTLKRIKN 105 (112)
Q Consensus 55 ~lae~i~~~l~pirer~~~l~~d~-~~l~~il~~Ga~kA~~~A~~tl~~Vk~ 105 (112)
..++.--+....+|+|....+++- +.+.+.-....+++++.+..|-+-|++
T Consensus 27 ~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e 78 (101)
T PRK10404 27 SSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHE 78 (101)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555566666666665442 245555555666778888777777764
No 83
>PF02734 Dak2: DAK2 domain; InterPro: IPR004007 Dihydroxyacetone kinase (glycerone kinase) 2.7.1.29 from EC catalyses the phosphorylation of glycerone in the presence of ATP to glycerone phosphate in the glycerol utilization pathway. This is the predicted phosphatase domain of the dihydroxyacetone kinase family.; GO: 0004371 glycerone kinase activity, 0006071 glycerol metabolic process; PDB: 3CR3_B 1UN8_A 1UN9_B 3PNL_B 2BTD_A.
Probab=23.56 E-value=1e+02 Score=21.30 Aligned_cols=41 Identities=29% Similarity=0.332 Sum_probs=30.2
Q ss_pred HHHhhHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2883 60 MQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLK 101 (112)
Q Consensus 60 i~~~l~pirer~~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~ 101 (112)
|++-|.|.-+.+.+-.+ ..-+.++|....+.|++-++.|-.
T Consensus 100 mlD~L~pa~~al~~~~~-~~~~~~~l~~a~~aA~~g~e~T~~ 140 (175)
T PF02734_consen 100 MLDALIPAAEALEEAKD-GKSLAEALEAAAEAAEEGAEATKD 140 (175)
T ss_dssp THHHHHHHHHHHHCCCC-T--HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888888887443 456888999988888888887754
No 84
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=23.48 E-value=2.9e+02 Score=24.76 Aligned_cols=48 Identities=23% Similarity=0.207 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Q psy2883 63 FLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDY 111 (112)
Q Consensus 63 ~l~pirer~~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl~~ 111 (112)
....+++.+++|.+.-+++++||.+-.+ -..+-.+-|.+|++..|-.+
T Consensus 447 e~~kl~~E~~eL~~~I~~l~~iL~~~~~-l~~vi~~EL~eik~kygd~R 494 (957)
T PRK13979 447 EIVAFEKEYKELEKLIKKLTKILSSEKE-LLKVIKKELKEVKEKYGDER 494 (957)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHhCCCC
Confidence 3455788888888888889999888766 45777778999999988543
No 85
>KOG0638|consensus
Probab=23.48 E-value=65 Score=25.30 Aligned_cols=53 Identities=11% Similarity=0.119 Sum_probs=45.6
Q ss_pred HHHHHHHhhHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q psy2883 56 LIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNI 109 (112)
Q Consensus 56 lae~i~~~l~pirer~~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl 109 (112)
.++-|++.++..|.|=-+++.-|....+.|++--.++.-.+...|+..++ +|+
T Consensus 269 ~tedIi~Ai~~lr~rG~eFLs~Ps~YYqnl~erl~~~~~~vked~~~l~e-l~I 321 (381)
T KOG0638|consen 269 NTEDIIEAIRGLRARGGEFLSPPSTYYQNLKERLSTSIRKVKEDIKLLEE-LGI 321 (381)
T ss_pred cchHHHHHHHHHHhcCCccccCCHHHHHhHHHHhhhhhhhhhccHHHHHH-cCe
Confidence 47899999999999999999999988999999888888888888888765 443
No 86
>PF12066 DUF3546: Domain of unknown function (DUF3546); InterPro: IPR021933 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 93 to 114 amino acids in length. This domain has two completely conserved Y residues that may be functionally important. ; PDB: 3AX1_A.
Probab=23.09 E-value=2.2e+02 Score=18.28 Aligned_cols=61 Identities=11% Similarity=0.135 Sum_probs=37.2
Q ss_pred CcCcHHHH-HHhHcCCChHHHHHHHHHHHHHhhHH------HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2883 33 KKNCQYEI-SLYQGGLGDVTIKKYLIEVMQDFLFP------IRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRI 103 (112)
Q Consensus 33 ~~~~~~~i-~~~~~~~~~~~~K~~lae~i~~~l~p------irer~~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~~V 103 (112)
+..+++++ ..|. .|.. ......+..++.- +|+|| +|.++......-.+.++..+..-+...
T Consensus 11 D~i~~~ea~~~Y~-eYK~----e~~~~q~~~FF~~HK~eeWFreKY-----~P~~~~~~~~~~~~~~~~~~~~F~~~l 78 (110)
T PF12066_consen 11 DDITPEEAQKRYD-EYKE----EFQRKQLRAFFEQHKDEEWFREKY-----HPEELDKRREERKEFRKGRADVFMEDL 78 (110)
T ss_dssp TS--HHHHHHHHH-HHHH----HHHHHHHHHHHHHHTTSHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-HHHH----HHHHHHHHHHHHHhcCCHHHHHhc-----CcHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577888 8886 3321 2223333444433 67777 888888888887777777777766654
No 87
>COG2357 PpGpp synthetase catalytic domain [General function prediction only]
Probab=22.60 E-value=3.3e+02 Score=20.22 Aligned_cols=51 Identities=14% Similarity=0.116 Sum_probs=38.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy2883 55 YLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAM 107 (112)
Q Consensus 55 ~lae~i~~~l~pirer~~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~ 107 (112)
.+|.-.|..|+ +.-+|++-...|+.+..=|+.-++.| ..+...|.++++.+
T Consensus 159 Tiam~fWAsiE-H~l~YKy~~~~Pe~i~~el~~~a~~~-~~lDe~m~~I~~~i 209 (231)
T COG2357 159 TIAMDFWASIE-HKLRYKYGGEVPEEIKAELKRAAEAA-AGLDEEMSEIRKEI 209 (231)
T ss_pred HHHHHHHHHHH-HHhhccccccChHHHHHHHHHHHHHH-HHhhHHHHHHHHHH
Confidence 45666777776 66677766678999999998888866 55899998888653
No 88
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=22.55 E-value=2.7e+02 Score=19.22 Aligned_cols=34 Identities=18% Similarity=0.118 Sum_probs=14.9
Q ss_pred HHHHHhhHHHHHHHHHHhhC-HHHHHHHHHHHHHH
Q psy2883 58 EVMQDFLFPIRIKRKQLSKD-KKYIQDILKIGSEK 91 (112)
Q Consensus 58 e~i~~~l~pirer~~~l~~d-~~~l~~il~~Ga~k 91 (112)
+-+...|..++....+-.++ -+.++.++..=..+
T Consensus 37 d~~~~~l~~~~~~l~eeik~~n~~~~e~l~~~~~k 71 (155)
T PF07464_consen 37 DSVAQQLQNVSSSLQEEIKDANPEAEEALKQLKTK 71 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHH
Confidence 33444444444444444433 23455555553333
No 89
>PF12685 SpoIIIAH: SpoIIIAH-like protein; InterPro: IPR024232 Stage III sporulation protein AH (SpoIIIAH) is a protein that is involved in forespore engulfment. It forms a channel with SpoIIIAH that is open on the forespore end and closed (or gated) on the mother cell end. This allows sigma-E-directed gene expression in the mother-cell compartment of the sporangium to trigger the activation of sigma-G forespore-specific gene expression by a pathway of intercellular signaling. This family of proteins is found in bacteria, archaea and eukaryotes and so must have a wider function than in sporulation. Proteins in this family are typically between 174 and 223 amino acids in length.; PDB: 3UZ0_A 3TUF_A.
Probab=22.43 E-value=2.5e+02 Score=19.76 Aligned_cols=45 Identities=22% Similarity=0.417 Sum_probs=30.8
Q ss_pred HhhHHHHHHHHHHhh-CHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q psy2883 62 DFLFPIRIKRKQLSK-DKKYIQDILKIG--SEKAQEEAEKTLKRIKNA 106 (112)
Q Consensus 62 ~~l~pirer~~~l~~-d~~~l~~il~~G--a~kA~~~A~~tl~~Vk~~ 106 (112)
++|...|-.|+.-+. ..+.|..|+.+. ++.++.-|...|.++-+.
T Consensus 86 ~~f~~~rl~Re~~r~~~~e~L~~ii~~~~~s~~~k~~A~~~~~~l~~~ 133 (196)
T PF12685_consen 86 DYFAEARLEREQSRSKQIETLKEIINNENASEEEKKEAQDKLLELTEK 133 (196)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHT-TTS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 468888888877764 346888898876 456778888888776543
No 90
>PRK06851 hypothetical protein; Provisional
Probab=22.23 E-value=2e+02 Score=22.70 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=17.1
Q ss_pred CCCCCCCCCCCCCCCcc-cHHHHHHHhh
Q psy2883 2 YTDPNHLHISDPGKVDG-NPVFTYLDQF 28 (112)
Q Consensus 2 ~TDs~~~~~~~~~~p~~-~nl~~l~~~~ 28 (112)
+-|++....-+|..||. ..++++..++
T Consensus 85 ivDgtaph~~~P~~pgav~eiinL~~~~ 112 (367)
T PRK06851 85 ILDGTAPHVVDPKAPGAVEEIINLGDAW 112 (367)
T ss_pred EEcCCCcCcCCCCCCCcceEEEEHHHHh
Confidence 34666444457888885 5566666666
No 91
>PF07371 DUF1490: Protein of unknown function (DUF1490); InterPro: IPR009963 This family consists of several hypothetical bacterial proteins of around 90 residues in length. Members of the family seem to be found exclusively in Mycobacterium species. The function of this family is unknown.
Probab=22.13 E-value=1.7e+02 Score=18.52 Aligned_cols=23 Identities=9% Similarity=0.199 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Q psy2883 86 KIGSEKAQEEAEKTLKRIKNAMN 108 (112)
Q Consensus 86 ~~Ga~kA~~~A~~tl~~Vk~~~G 108 (112)
.+++|+||-.+...|.|-++.+|
T Consensus 55 E~~aE~aRl~vaDVvAEA~eriG 77 (90)
T PF07371_consen 55 EEAAESARLKVADVVAEARERIG 77 (90)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhc
Confidence 37888899888889999888887
No 92
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=21.66 E-value=3e+02 Score=19.43 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy2883 86 KIGSEKAQEEAEKTLKRI 103 (112)
Q Consensus 86 ~~Ga~kA~~~A~~tl~~V 103 (112)
+..-+..+.+..+.+++|
T Consensus 154 k~~e~eiQkltd~~i~~i 171 (185)
T PRK00083 154 KRAEDEIQKLTDKYIKKI 171 (185)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334445555544444
No 93
>PRK05560 DNA gyrase subunit A; Validated
Probab=21.54 E-value=4.8e+02 Score=22.81 Aligned_cols=49 Identities=20% Similarity=0.009 Sum_probs=38.4
Q ss_pred HhhHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Q psy2883 62 DFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDY 111 (112)
Q Consensus 62 ~~l~pirer~~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl~~ 111 (112)
....-+++.++++.+.-++++.+|.+-.+ -..+..+-|.++++..|-.+
T Consensus 430 ~e~~kL~~E~~~l~~ei~~l~~iL~~~~~-l~~~i~~EL~~ikkkfg~~R 478 (805)
T PRK05560 430 LERDKIEDEYKELLALIADLKDILASPER-LLEIIKEELLEIKEKFGDPR 478 (805)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHhCCCC
Confidence 44556888888888888899999988776 44677788999999988543
No 94
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=21.35 E-value=4.8e+02 Score=22.62 Aligned_cols=49 Identities=14% Similarity=0.225 Sum_probs=37.8
Q ss_pred HhhHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Q psy2883 62 DFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDY 111 (112)
Q Consensus 62 ~~l~pirer~~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl~~ 111 (112)
.....+++.++++.+.-+.++.||.+-.. -..+...-|.++++..|-.+
T Consensus 427 ~e~~kl~~e~~~l~~~i~~l~~iL~~~~~-~~~~i~~el~~ik~kfg~~R 475 (738)
T TIGR01061 427 TDIFELKEEQNELEKKIISLEQIIASEKA-RNKLLKKQLEEYKKQFAQQR 475 (738)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHhCCCC
Confidence 33446788888888888889999988776 45777788999999988543
No 95
>KOG3156|consensus
Probab=21.23 E-value=3.4e+02 Score=19.95 Aligned_cols=46 Identities=15% Similarity=0.230 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q psy2883 49 DVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQE 94 (112)
Q Consensus 49 ~~~~K~~lae~i~~~l~pirer~~~l~~d~~~l~~il~~Ga~kA~~ 94 (112)
..+++++|--.-...+..+|..++.+.+|-+.++.-|.+-..++..
T Consensus 103 f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~lr~ei~~~~a 148 (220)
T KOG3156|consen 103 FAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSLRHEISKTTA 148 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 3458888888888889999999999999888888888776666543
No 96
>PF05085 DUF685: Protein of unknown function (DUF685); InterPro: IPR007777 This family consists of uncharacterised proteins from Borrelia species. There is some evidence to suggest that the proteins may be outer surface proteins.
Probab=20.94 E-value=3.8e+02 Score=20.31 Aligned_cols=37 Identities=27% Similarity=0.427 Sum_probs=22.5
Q ss_pred hH-cCCChHHHHHHHHHHHHHhhHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q psy2883 43 YQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEK 91 (112)
Q Consensus 43 ~~-~~~~~~~~K~~lae~i~~~l~pirer~~~l~~d~~~l~~il~~Ga~k 91 (112)
|. .|++| ||+..-+.|.++|. .|.++|++|-.+=-+|
T Consensus 53 fk~e~~~~--fk~iik~~ia~el~----------~~~~fi~~iy~kii~k 90 (265)
T PF05085_consen 53 FKGEGLGY--FKEIIKSTIAEELA----------ADKDFIEKIYIKIIDK 90 (265)
T ss_pred hccCCcHH--HHHHHHHHHHHHHh----------hchHHHHHHHHHHHHH
Confidence 44 45555 89888777776654 5556666555544443
No 97
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=20.88 E-value=4.7e+02 Score=22.78 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC
Q psy2883 65 FPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNID 110 (112)
Q Consensus 65 ~pirer~~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl~ 110 (112)
..|+++++++....++++++|.+-.. -..+-.+-|.++++..|-.
T Consensus 427 ~~i~~E~~~l~~e~~~l~~~L~~~~~-~~~~i~~el~~~~~~~g~~ 471 (735)
T TIGR01062 427 HAIIDEQSELEKERAILEKILKSERE-LNQLVKKEIQADATKYGLA 471 (735)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHhCCC
Confidence 45888899998888899999988766 4455566788889888854
No 98
>PF12699 phiKZ_IP: phiKZ-like phage internal head proteins; InterPro: IPR024413 Phage internal head proteins (IP) are proteins that are encoded by a bacteriophage and assembled into the mature virion inside the capsid head. The most analogous characterised IP proteins are those of bacteriophage T4, which are known to be proteolytically processed during phage maturation, and then subsequently injected into the host cell during infection. The phiKZ_IP family consists of internal head proteins encoded by phiKZ-like phages. Each phage encodes three to six members of this family []. Members of the family reside in the head [] and are cleaved during phage maturation to separate an N-terminal propeptide from a C-terminal domain. The C-terminal domain remains in the mature capsid. The N-terminal propeptide domain is either mostly or completely removed from the mature capsid. In one case, an unrelated polypeptide is embedded in the propeptide and also remains in the mature capsid. The phiKZ-like IP proteins are not discernibly homologous to the T4 IP proteins, and it is not known if the phiKZ-like IP proteins are injected into the host cell, or have some other function within the head.
Probab=20.82 E-value=4e+02 Score=20.56 Aligned_cols=28 Identities=25% Similarity=0.243 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2883 79 KYIQDILKIGSEKAQEEAEKTLKRIKNA 106 (112)
Q Consensus 79 ~~l~~il~~Ga~kA~~~A~~tl~~Vk~~ 106 (112)
...-.-+..|..+.++.+++.+..++++
T Consensus 78 ~~~~~~~~~~~~~~~~r~~~L~~~~~~l 105 (339)
T PF12699_consen 78 KDYAVKFMSGIERVEERIDKLQERAKKL 105 (339)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhh
Confidence 3455667778888888888888888776
No 99
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=20.62 E-value=4.5e+02 Score=22.99 Aligned_cols=48 Identities=19% Similarity=0.094 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Q psy2883 63 FLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDY 111 (112)
Q Consensus 63 ~l~pirer~~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl~~ 111 (112)
....+++.++++.+.-++++.||.+-.+ -..+-.+-|.++++..|-.+
T Consensus 428 e~~kl~~e~~~l~~ei~~l~~iL~~~~~-l~~vi~~EL~eikkkfg~~R 475 (800)
T TIGR01063 428 EREKLQEEYKELLELIADLEDILASEER-VLEIIREELEEIKEQFGDPR 475 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHH-HHHHHHHHHHHHHHHhCCCC
Confidence 3446788888888888899999988766 45777788999999988543
No 100
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=20.58 E-value=3.1e+02 Score=19.16 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=16.3
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2883 68 RIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKN 105 (112)
Q Consensus 68 rer~~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~ 105 (112)
.|+|.++.+ .+.++..++....|.+-+..++++++
T Consensus 103 ~E~R~~lvK---~~k~~~E~~Kv~iRniR~~~~~~lKk 137 (179)
T cd00520 103 EERRKELVK---DAKKIAEEAKVAIRNIRRDANDKIKK 137 (179)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444442 34444444444444444444444443
No 101
>PF13256 DUF4047: Domain of unknown function (DUF4047)
Probab=20.39 E-value=2.8e+02 Score=18.56 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhCHHHHHHHHHH
Q psy2883 51 TIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKI 87 (112)
Q Consensus 51 ~~K~~lae~i~~~l~pirer~~~l~~d~~~l~~il~~ 87 (112)
+.|....+.+-+.+...++.++++......|.+|-.+
T Consensus 53 ~~~~~Sie~leq~~~~w~~~rEki~~e~eaLQ~IY~e 89 (125)
T PF13256_consen 53 KVKVTSIEELEQAIVEWKQGREKIVAEREALQNIYTE 89 (125)
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566667777777888888887777777777543
No 102
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=20.20 E-value=2.5e+02 Score=17.90 Aligned_cols=23 Identities=9% Similarity=-0.035 Sum_probs=11.3
Q ss_pred HhhHHHHHHHHHHhhCHHHHHHH
Q psy2883 62 DFLFPIRIKRKQLSKDKKYIQDI 84 (112)
Q Consensus 62 ~~l~pirer~~~l~~d~~~l~~i 84 (112)
..-.-++++...+.++++|++++
T Consensus 48 ~~n~~L~~eI~~L~~~~dyiEe~ 70 (105)
T PRK00888 48 ARNDQLFAEIDDLKGGQEAIEER 70 (105)
T ss_pred HHHHHHHHHHHHhhCcHHHHHHH
Confidence 33344555555555545555544
No 103
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=20.16 E-value=2.4e+02 Score=20.69 Aligned_cols=48 Identities=17% Similarity=0.129 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHH-hhCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCcCC
Q psy2883 63 FLFPIRIKRKQL-SKDKKYIQDI-LKIGSEKAQEEAEKTLKRIKNAMNIDY 111 (112)
Q Consensus 63 ~l~pirer~~~l-~~d~~~l~~i-l~~Ga~kA~~~A~~tl~~Vk~~~Gl~~ 111 (112)
.|.|-.++..++ ++||+.+... +.+=|+ .-.+...|+-+.-+++||.-
T Consensus 25 ~Lt~~e~~Ia~yil~~~~~v~~~si~~lA~-~~~vS~aTi~Rf~kkLGf~g 74 (292)
T PRK11337 25 GLTPLESRVVEWLLKPGDLSEATALKDIAE-ALAVSEAMIVKVAKKLGFSG 74 (292)
T ss_pred hcCHHHHHHHHHHHhCHHHHHhcCHHHHHH-HhCCChHHHHHHHHHcCCCC
Confidence 344555554444 3566665555 233333 33778889999999999853
Done!