Query psy2883
Match_columns 112
No_of_seqs 115 out of 1074
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 19:21:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2883.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2883hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sz3_A Tryptophanyl-tRNA synth 100.0 1.2E-28 4E-33 187.5 13.1 107 1-111 229-339 (341)
2 3n9i_A Tryptophanyl-tRNA synth 100.0 4.2E-28 1.4E-32 184.7 13.3 106 1-111 235-344 (346)
3 3prh_A Tryptophanyl-tRNA synth 100.0 4.3E-28 1.5E-32 186.9 12.7 105 1-111 254-360 (388)
4 2g36_A Tryptophanyl-tRNA synth 99.9 8.1E-27 2.8E-31 177.3 13.7 109 1-111 230-340 (340)
5 2el7_A Tryptophanyl-tRNA synth 99.9 1.2E-26 4.1E-31 176.2 13.5 108 1-112 220-330 (337)
6 3tzl_A Tryptophanyl-tRNA synth 99.9 2E-26 7E-31 174.0 13.2 104 1-109 217-322 (322)
7 1i6k_A TRPRS, tryptophanyl-tRN 99.9 2.1E-26 7.1E-31 174.3 12.2 105 1-111 220-326 (328)
8 2yy5_A Tryptophanyl-tRNA synth 99.9 4.4E-26 1.5E-30 173.7 9.1 105 1-112 230-345 (348)
9 1yi8_B Tryptophanyl-tRNA synth 99.9 3.4E-25 1.1E-29 169.0 13.6 109 1-111 240-350 (351)
10 3jxe_A Tryptophanyl-tRNA synth 99.6 1.2E-15 4.1E-20 117.7 6.7 87 1-91 280-371 (392)
11 2ip1_A Tryptophanyl-tRNA synth 99.6 2.4E-17 8.2E-22 128.6 -4.7 90 13-104 337-432 (432)
12 3tze_A Tryptophanyl-tRNA synth 99.5 5E-14 1.7E-18 109.1 7.4 81 1-85 316-401 (406)
13 3hv0_A Tryptophanyl-tRNA synth 99.5 8.7E-14 3E-18 107.4 8.0 82 1-86 293-379 (393)
14 3i05_A Tryptophanyl-tRNA synth 99.5 2.1E-14 7.4E-19 110.9 4.2 88 1-92 296-392 (395)
15 3foc_A Tryptophanyl-tRNA synth 99.5 5.8E-14 2E-18 109.9 6.0 81 1-85 360-445 (451)
16 3a04_A Tryptophanyl-tRNA synth 99.4 5.1E-13 1.7E-17 102.5 5.5 81 1-85 282-367 (372)
17 3hzr_A Tryptophanyl-tRNA synth 99.3 3.7E-13 1.3E-17 103.7 3.4 79 2-86 302-382 (386)
18 3p0j_A Tyrosyl-tRNA synthetase 99.3 3.1E-11 1.1E-15 98.7 10.2 86 1-86 256-360 (690)
19 3vgj_A Tyrosyl-tRNA synthetase 99.0 1.2E-09 4E-14 83.9 8.2 51 34-84 314-366 (373)
20 2cyb_A Tyrosyl-tRNA synthetase 98.9 2.5E-09 8.6E-14 80.4 6.7 60 14-73 244-321 (323)
21 2zp1_A Tyrosyl-tRNA synthetase 98.9 8.9E-09 3E-13 77.2 8.2 60 14-73 234-308 (314)
22 1r6t_A Tryptophanyl-tRNA synth 98.8 2.7E-09 9.2E-14 84.1 5.4 69 13-85 391-461 (477)
23 1r6u_A Tryptophanyl-tRNA synth 98.8 3.9E-09 1.3E-13 82.4 4.5 69 13-85 344-414 (437)
24 2cya_A Tyrosyl-tRNA synthetase 98.7 5.4E-08 1.9E-12 74.3 8.2 60 14-73 269-347 (364)
25 2cyc_A Tyrosyl-tRNA synthetase 98.7 4.1E-08 1.4E-12 75.3 7.5 61 14-74 282-361 (375)
26 2dlc_X Tyrosyl-tRNA synthetase 98.7 1.3E-07 4.4E-12 72.9 9.7 53 33-89 301-355 (394)
27 2j5b_A Tyrosyl-tRNA synthetase 98.6 1E-07 3.4E-12 72.4 6.7 59 13-74 262-331 (348)
28 1h3f_A Tyrosyl-tRNA synthetase 98.6 8.9E-09 3.1E-13 80.3 0.7 79 17-103 258-345 (432)
29 1n3l_A Tyrosyl-tRNA synthetase 98.4 6.8E-07 2.3E-11 68.4 6.9 40 33-72 288-329 (372)
30 3p0j_A Tyrosyl-tRNA synthetase 97.7 0.00025 8.6E-09 58.1 10.4 62 10-72 591-669 (690)
31 2yxn_A Tyrosyl-tRNA synthetase 97.6 8.5E-05 2.9E-09 55.7 5.0 55 16-72 263-319 (322)
32 1y42_X Tyrosyl-tRNA synthetase 96.9 0.0005 1.7E-08 52.9 2.8 53 16-73 324-378 (392)
33 2pid_A Tyrosyl-tRNA synthetase 96.8 0.00052 1.8E-08 52.1 2.6 52 21-73 287-339 (356)
34 2ts1_A Tyrosyl-tRNA synthetase 96.0 0.0043 1.5E-07 48.1 3.3 53 19-73 261-315 (419)
35 1jil_A Tyrrs, tyrosyl-tRNA syn 95.9 0.0035 1.2E-07 48.6 2.5 52 19-72 262-315 (420)
36 2jan_A Tyrosyl-tRNA synthetase 95.7 0.0051 1.8E-07 47.9 2.6 51 21-73 265-317 (432)
37 1y66_A Engrailed homeodomain; 59.3 17 0.00059 19.1 3.7 30 80-109 7-36 (52)
38 4e6k_G BFD, bacterioferritin-a 54.5 13 0.00045 21.5 3.1 33 35-67 23-56 (73)
39 2do1_A Nuclear protein HCC-1; 53.6 14 0.00048 20.3 2.9 34 33-66 11-46 (55)
40 2a7o_A Huntingtin interacting 47.2 6.7 0.00023 24.9 1.1 22 49-70 19-40 (112)
41 2kvu_A MKL/myocardin-like prot 46.3 22 0.00076 20.9 3.2 33 33-65 27-61 (75)
42 1zrj_A E1B-55KDA-associated pr 45.5 19 0.00065 19.4 2.6 33 33-65 11-45 (50)
43 2rnn_A E3 SUMO-protein ligase 45.3 46 0.0016 21.0 4.8 36 33-68 38-75 (114)
44 1h1j_S THO1 protein; SAP domai 41.7 35 0.0012 18.3 3.4 33 33-65 6-40 (51)
45 3twe_A Alpha4H; unknown functi 40.4 28 0.00097 15.9 3.1 19 57-75 3-21 (27)
46 3s84_A Apolipoprotein A-IV; fo 39.6 1E+02 0.0035 22.0 6.7 28 78-105 90-117 (273)
47 3a7m_A Flagellar protein FLIT; 39.6 55 0.0019 20.7 4.6 29 79-108 66-94 (122)
48 2k85_A Glucocorticoid receptor 36.9 61 0.0021 18.6 4.2 33 73-105 36-68 (69)
49 3h3m_A Flagellar protein FLIT; 36.7 68 0.0023 20.4 4.7 30 79-109 79-108 (126)
50 3nkz_A Flagellar protein FLIT; 34.2 74 0.0025 20.0 4.6 30 79-109 69-98 (123)
51 3lpx_A GYRA, DNA gyrase, A sub 33.3 81 0.0028 24.9 5.4 59 52-111 420-487 (500)
52 3k1t_A Glutamate--cysteine lig 32.5 39 0.0013 26.1 3.4 22 54-75 252-273 (432)
53 1vdy_A Hypothetical protein (R 31.9 42 0.0014 21.8 3.1 54 54-111 48-103 (140)
54 1gs9_A Apolipoprotein E, APOE4 31.4 24 0.00081 23.6 1.9 46 63-108 81-127 (165)
55 1oeg_A Apolipoprotein E; siali 30.7 32 0.0011 16.0 1.7 19 90-108 4-22 (26)
56 3ilw_A DNA gyrase subunit A; D 30.7 1.2E+02 0.004 23.8 5.9 47 64-111 418-464 (470)
57 1ei1_A DNA gyrase B, GYRB; ATP 30.5 1.7E+02 0.0059 21.9 7.2 47 46-98 338-386 (391)
58 2l3i_A Aoxki4A, antimicrobial 28.3 53 0.0018 15.3 2.4 21 45-65 6-26 (30)
59 1dmu_A BGLI restriction endonu 27.5 1.7E+02 0.0059 21.0 5.8 39 67-105 13-51 (299)
60 2yy0_A C-MYC-binding protein; 26.6 64 0.0022 17.3 2.8 29 57-85 21-49 (53)
61 2nov_A DNA topoisomerase 4 sub 25.9 1.1E+02 0.0037 24.1 5.0 48 63-111 431-478 (496)
62 1kij_A DNA gyrase subunit B; t 25.6 2.1E+02 0.0072 21.4 7.2 47 46-98 337-385 (390)
63 3pnl_B PTS-dependent dihydroxy 25.5 76 0.0026 21.8 3.7 42 60-101 131-172 (211)
64 2xcs_B DNA gyrase subunit B, D 25.4 1.5E+02 0.0052 24.4 5.9 47 64-111 639-685 (692)
65 1zvu_A Topoisomerase IV subuni 25.4 1.5E+02 0.0052 24.5 5.9 47 64-111 404-450 (716)
66 2qk1_A Protein STU2; STU2P, XM 25.4 1.3E+02 0.0045 20.6 5.0 56 51-109 161-224 (249)
67 1ug2_A 2610100B20RIK gene prod 25.2 76 0.0026 19.3 3.2 40 36-76 40-82 (95)
68 2inr_A DNA topoisomerase 4 sub 24.6 1.7E+02 0.0058 23.2 5.9 47 64-111 456-502 (514)
69 2cp9_A EF-TS, EF-TSMT, elongat 23.5 68 0.0023 18.0 2.6 15 45-59 20-34 (64)
70 2vqx_A Metalloproteinase; ther 23.5 31 0.0011 25.8 1.5 31 78-108 12-42 (341)
71 3d55_A Antitoxin, uncharacteri 23.0 50 0.0017 19.3 2.1 38 72-110 50-90 (91)
72 1w53_A Phosphoserine phosphata 22.7 1.1E+02 0.0037 18.1 3.5 31 63-99 3-33 (84)
73 2bni_A General control protein 22.1 84 0.0029 15.5 3.3 19 79-97 8-26 (34)
74 1xgw_A Epsin 4; ENTH, enthopro 22.1 1.8E+02 0.0063 19.4 6.7 54 54-111 69-127 (176)
75 1xb2_B EF-TS, elongation facto 20.3 2.1E+02 0.0073 20.7 5.4 38 45-97 15-57 (291)
76 1nha_A TFIIF-alpha, transcript 20.2 44 0.0015 19.9 1.4 35 33-68 31-69 (82)
77 4hlb_A Uncharacterized protein 20.1 80 0.0027 19.0 2.5 18 93-110 70-87 (115)
No 1
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=99.96 E-value=1.2e-28 Score=187.50 Aligned_cols=107 Identities=21% Similarity=0.266 Sum_probs=100.8
Q ss_pred CCCCCCC---CCCCCCCCCcccHHHHHHHhhCCCCCcCcHHHH-HHhHcCCChHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy2883 1 MYTDPNH---LHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEI-SLYQGGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSK 76 (112)
Q Consensus 1 a~TDs~~---~~~~~~~~p~~~nl~~l~~~~~~~~~~~~~~~i-~~~~~~~~~~~~K~~lae~i~~~l~pirer~~~l~~ 76 (112)
|+|||.+ +.++++++|++||++.||++| ++.+++++ ++|.++.++++||+.|++.|+++|+|||+||+++++
T Consensus 229 a~Td~~~~~~~~~~~~~~p~v~~l~~~~~~~----~~~~~e~i~~~~~g~~~~g~~K~~lae~i~~~l~pirer~~~~~~ 304 (341)
T 3sz3_A 229 AQTDAETPPRIAYDVENKAGIANLMGLYSAA----TGKTFAEIEAQYAGVEMYGPFKKDVGEAVVAMLEPVQAEYQRIRN 304 (341)
T ss_dssp CCCCCCSSCCCCCCTTTCHHHHHHHHHHHHH----HCCCHHHHHHHTTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCcccccCCCCCcchhHHHHHHHHc----CCccHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6899974 678889999999999999999 77899999 999844899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Q psy2883 77 DKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDY 111 (112)
Q Consensus 77 d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl~~ 111 (112)
|+++|++||++|++|||++|++||++||++|||.+
T Consensus 305 ~~~~l~~il~~G~~kA~~~A~~tl~~v~~~~g~~~ 339 (341)
T 3sz3_A 305 DREYLNSVMRDGAEKASAKALQTLKKVYAAVGFVA 339 (341)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999964
No 2
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=99.95 E-value=4.2e-28 Score=184.69 Aligned_cols=106 Identities=17% Similarity=0.265 Sum_probs=99.2
Q ss_pred CCCCCCC---CCCCCCCCCcccHHHHHHHhhCCCCCcCcHHHH-HHhHcCCChHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy2883 1 MYTDPNH---LHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEI-SLYQGGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSK 76 (112)
Q Consensus 1 a~TDs~~---~~~~~~~~p~~~nl~~l~~~~~~~~~~~~~~~i-~~~~~~~~~~~~K~~lae~i~~~l~pirer~~~l~~ 76 (112)
|+|||.+ +.++++++|+++|++.||+.| ++.+++++ ++|. +.++|+||+.|+|.|+++|+|||+||+++++
T Consensus 235 A~Td~~~~~~~~~~~~~~p~v~~l~~~~~~~----~~~~~eel~~~y~-~~~~g~lK~~lae~l~~~L~pirer~~~~~~ 309 (346)
T 3n9i_A 235 AMTDSDEPALIRYDVEKKAGVSNLLDILSGV----TGQSIPELEAQFT-GQMYGHLKGAVADAVSGMLSELQERYRTYRE 309 (346)
T ss_dssp CCCCCCSSCCCCCCTTTCHHHHHHHHHHHHH----HCCCHHHHHHHTT-TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcCCCCCCccccCCCCCCCChhHHHHHHHhc----CCccHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7899974 567889999999999999999 77899999 9998 3368999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Q psy2883 77 DKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDY 111 (112)
Q Consensus 77 d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl~~ 111 (112)
|+++|++||++|++|||++|++||++||++|||..
T Consensus 310 ~~~~l~~il~~G~~kA~~~A~~tl~~v~~~~g~~~ 344 (346)
T 3n9i_A 310 DEALLQDVMREGAAKARARAQVTLAKVYEAIGFVA 344 (346)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999975
No 3
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=99.95 E-value=4.3e-28 Score=186.90 Aligned_cols=105 Identities=27% Similarity=0.352 Sum_probs=99.5
Q ss_pred CCCCCCC-CCCCCCCCCcccHHHHHHHhhCCCCCcCcHHHH-HHhHcCCChHHHHHHHHHHHHHhhHHHHHHHHHHhhCH
Q psy2883 1 MYTDPNH-LHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEI-SLYQGGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDK 78 (112)
Q Consensus 1 a~TDs~~-~~~~~~~~p~~~nl~~l~~~~~~~~~~~~~~~i-~~~~~~~~~~~~K~~lae~i~~~l~pirer~~~l~~d~ 78 (112)
|+|||.+ +.++++++|++||++.|+++| ++.+++++ ++|. +.++++||+.|++.|+++|+|||+||+++++|+
T Consensus 254 a~TD~~~~~~~~~~~~p~v~~l~~i~~~~----~~~~~eel~~~y~-g~~~g~lK~~lae~l~~~l~pirer~~~~~~~~ 328 (388)
T 3prh_A 254 AVTDSEGIVKFDKENKPGVSNLLTIYSIL----GNTTIEELEAKYE-GKGYGEFKGDLAEVVVNALKPIQDRYYELIESE 328 (388)
T ss_dssp CCCCSSCCCCCCTTTCHHHHHHHHHHHHH----HTCCHHHHHHHTT-TCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSH
T ss_pred ccCCCCCcccCCCCCCCCcchHHHHHHhc----CCCcHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 6899975 788999999999999999999 77899999 9998 459999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Q psy2883 79 KYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDY 111 (112)
Q Consensus 79 ~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl~~ 111 (112)
+|++||++|++|||++|++||++||++|||.+
T Consensus 329 -~l~~il~~Ga~kA~~~A~~tl~~v~~~~g~~~ 360 (388)
T 3prh_A 329 -ELDRILDEGAERANRTANKMLKKMENAMGLGR 360 (388)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 79999999999999999999999999999976
No 4
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=99.94 E-value=8.1e-27 Score=177.32 Aligned_cols=109 Identities=31% Similarity=0.533 Sum_probs=97.8
Q ss_pred CCCCCCCCCCCCCCCCcccHHHHHHHhhCCCCCcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHHHHhhCH
Q psy2883 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDK 78 (112)
Q Consensus 1 a~TDs~~~~~~~~~~p~~~nl~~l~~~~~~~~~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~~l~~d~ 78 (112)
|+|||.+....+|++|++|+++.|+++|.. +...++++ ++|. +++++++||+.|++.|+++|.|||+||+++++|+
T Consensus 230 a~td~~~~~~~~~~~p~~~~v~~~~~~f~~--~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~~ 307 (340)
T 2g36_A 230 MMTDPARVRRSDPGNPENCPVWKYHQAFDI--SEEESKWVWEGCTTASIGCVDCKKLLLKNMKRKLAPIWENFRKIDEDP 307 (340)
T ss_dssp CCCCTTCSSTTSCCCGGGCHHHHHHHHTTC--CHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CCCCcccccccCCCCCchhHHHHHHHHHCC--CHhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 689998733445599999999999999942 12456999 9999 7899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Q psy2883 79 KYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDY 111 (112)
Q Consensus 79 ~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl~~ 111 (112)
++|++||.+|++|||++|++||++||++|||.+
T Consensus 308 ~~~~~il~~g~~~a~~~a~~t~~~v~~~~g~~~ 340 (340)
T 2g36_A 308 HYVDDVIMEGTKKAREVAAKTMEEVRRAMNLMF 340 (340)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999964
No 5
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=99.94 E-value=1.2e-26 Score=176.20 Aligned_cols=108 Identities=28% Similarity=0.531 Sum_probs=90.9
Q ss_pred CCCCCCCCCCCCCCCCcccHHHHHHHhhCCCCCcC-cHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHHHHhhC
Q psy2883 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKN-CQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKD 77 (112)
Q Consensus 1 a~TDs~~~~~~~~~~p~~~nl~~l~~~~~~~~~~~-~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~~l~~d 77 (112)
|+|||.+....+|+.|++|+++.|+++| ++. +++++ ++|. |+.++++||+.|++.|+++|.|+|+||+++++|
T Consensus 220 a~td~~~~~~~~~~~p~~~~v~~~~~~~----t~~~~i~~l~~~~~~g~~~~~~~K~~La~~i~~~l~p~re~~~~~~~~ 295 (337)
T 2el7_A 220 LPDDPQRIRLSDPGDPERTILFTYLSYF----APKDLVEALKEEYRKAGVGTYVVKRILFDHLMEALRPIRERAEALKKD 295 (337)
T ss_dssp CCCCC-------------CHHHHHHHHH----SCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCccccccCCCCCchhhHHHHHHHc----CChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHcC
Confidence 6799986333456669999999999999 565 89999 9999 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCC
Q psy2883 78 KKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDYF 112 (112)
Q Consensus 78 ~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl~~~ 112 (112)
+++|++||.+|++|||++|++||++||++|||.||
T Consensus 296 ~~~l~~il~~G~~~a~~~a~~~~~~v~~~~g~~~~ 330 (337)
T 2el7_A 296 PDYVMDALLEGAKRARAVAQATMEEVREKVGLLLP 330 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999999999999999999999999999999875
No 6
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=99.94 E-value=2e-26 Score=174.02 Aligned_cols=104 Identities=26% Similarity=0.432 Sum_probs=96.4
Q ss_pred CCCCCCCCCCCCCCCCcccHHHHHHHhhCCCCCcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHHHHhhCH
Q psy2883 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDK 78 (112)
Q Consensus 1 a~TDs~~~~~~~~~~p~~~nl~~l~~~~~~~~~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~~l~~d~ 78 (112)
|+|||.+. .++++|++|+++.|+++|. +.++++++ ++|. +++++++||+.|++.|+++|.|||+||+++++|+
T Consensus 217 a~td~~~~--~~~~~~~~~~v~~~~~~~~---~~~~i~~l~~~~~~g~~~~~~~K~~lae~l~~~l~pir~~~~~~~~~~ 291 (322)
T 3tzl_A 217 IVTDSTAL--EDPKDHENCNIFKIAKLFL---DESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKEAREKYNELLEKP 291 (322)
T ss_dssp CCCCCCCT--TSCCCGGGCHHHHHHGGGC---CHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHTHHHHHHHHHHHHSH
T ss_pred ccCCCccc--cCCCCCcchhHHHHHHHhC---ChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHcCH
Confidence 68999764 3567899999999999994 34678999 9998 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q psy2883 79 KYIQDILKIGSEKAQEEAEKTLKRIKNAMNI 109 (112)
Q Consensus 79 ~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl 109 (112)
++|++||++|++|||++|++||++||++|||
T Consensus 292 ~~l~~il~~G~~~a~~~a~~t~~~v~~~~g~ 322 (322)
T 3tzl_A 292 SHLKEILDFGATKARKIAQEKMQKIYEKIGL 322 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999997
No 7
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=99.94 E-value=2.1e-26 Score=174.33 Aligned_cols=105 Identities=20% Similarity=0.316 Sum_probs=99.4
Q ss_pred CCCCCCC-CCCCCCCCCcccHHHHHHHhhCCCCCcCcHHHH-HHhHcCCChHHHHHHHHHHHHHhhHHHHHHHHHHhhCH
Q psy2883 1 MYTDPNH-LHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEI-SLYQGGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDK 78 (112)
Q Consensus 1 a~TDs~~-~~~~~~~~p~~~nl~~l~~~~~~~~~~~~~~~i-~~~~~~~~~~~~K~~lae~i~~~l~pirer~~~l~~d~ 78 (112)
|+|||.+ +.+++.++|++||++.|+++| ++++++++ ++|. +.++++||+.|++.|+++|.|||+||+++++|+
T Consensus 220 a~td~~~~~~~~~~~~p~v~~~~~~~~~~----~~~~~~el~~~~~-g~~~~~~K~~La~~i~~~l~pire~~~~~~~~~ 294 (328)
T 1i6k_A 220 AVTDSEGTIRYDKEAKPGISNLLNIYSTL----SGQSIEELERQYE-GKGYGVFKADLAQVVIETLRPIQERYHHWMESE 294 (328)
T ss_dssp CCCCSSCCCCCBTTTBHHHHHHHHHHHHH----HCCCHHHHHHHTT-TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred cCCCCccccccCCCCCcchhhHHHHHHHC----CchhHHHHHHHHc-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHhCCh
Confidence 6899985 777887789999999999999 77899999 9999 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Q psy2883 79 KYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDY 111 (112)
Q Consensus 79 ~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl~~ 111 (112)
+ |++||.+|++|||++|++||++||++|||..
T Consensus 295 ~-~~~il~~g~~~a~~~a~~~~~~v~~~~g~~~ 326 (328)
T 1i6k_A 295 E-LDRVLDEGAEKANRVASEMVRKMEQAMGLGR 326 (328)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9 9999999999999999999999999999964
No 8
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=99.93 E-value=4.4e-26 Score=173.75 Aligned_cols=105 Identities=19% Similarity=0.274 Sum_probs=98.4
Q ss_pred CCCCCCC-CCCCCCCCCcccHHHHHHHhhCCCCCcCcHH---------HH-HHhHcCCChHHHHHHHHHHHHHhhHHHHH
Q psy2883 1 MYTDPNH-LHISDPGKVDGNPVFTYLDQFGTDKKKNCQY---------EI-SLYQGGLGDVTIKKYLIEVMQDFLFPIRI 69 (112)
Q Consensus 1 a~TDs~~-~~~~~~~~p~~~nl~~l~~~~~~~~~~~~~~---------~i-~~~~~~~~~~~~K~~lae~i~~~l~pire 69 (112)
|+|||.+ +.+++.++|+++|++.|++.| ++++++ ++ ++|. +.++++||+.|++.|+++|.|||+
T Consensus 230 a~td~~~~~~~~~~~~p~v~~~~~~~~~~----~~~~~~~~~~~~~~~el~~~~~-g~~~~~~K~~La~~i~~~l~pire 304 (348)
T 2yy5_A 230 ATTDSFNKIRFASKTQPGVTNMLTILKAL----LKEPVNQSLTNQLGNDLEAYFS-TKSYLDLKNALTEATVNLLVNIQR 304 (348)
T ss_dssp CCCCSSCCCSCCTTTCHHHHHHHHHHHHH----TTSGGGHHHHHHHCSCHHHHGG-GCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccccccCCCCCCchhhHHHHHHhC----ChHhhhhhcccchHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6899975 778887899999999999999 778899 99 9999 789999999999999999999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCC
Q psy2883 70 KRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDYF 112 (112)
Q Consensus 70 r~~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl~~~ 112 (112)
||+++ +|++ |++||.+|++|||++|++||++||++|||.|+
T Consensus 305 ~~~~~-~d~~-~~~~l~~G~~~a~~~a~~t~~~v~~~~g~~~~ 345 (348)
T 2yy5_A 305 KREQI-SREQ-VFNCLQAGKNQAQATARTTLALFYDGFGLGSQ 345 (348)
T ss_dssp HHHSS-CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSGG
T ss_pred HHHHh-cCch-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCee
Confidence 99999 8988 99999999999999999999999999999763
No 9
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=99.93 E-value=3.4e-25 Score=169.02 Aligned_cols=109 Identities=42% Similarity=0.754 Sum_probs=94.8
Q ss_pred CCCCCCCCCCCCCCCCcccHHHHHHHhhCCCCCcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHHHHhhCH
Q psy2883 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDK 78 (112)
Q Consensus 1 a~TDs~~~~~~~~~~p~~~nl~~l~~~~~~~~~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~~l~~d~ 78 (112)
|+|||.+....+|+.|+.|+++.++.+|.. +...++++ ++|. +++++++||+.|++.|+++|.|||+||+++++|+
T Consensus 240 a~td~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~~ 317 (351)
T 1yi8_B 240 MYTDPGHLRASDPGRVEGNPVFTFLDAFDP--DPARVQALKDQYRAGGLGDVKVKKHLIDVLNGVLAPIRTRRAEYERDP 317 (351)
T ss_dssp CCCCTTCCSTTSCCCCTTCTTHHHHHHHCS--CHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred cCCCcccccccCCCCCccchHHHHHHHHcC--ChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHhcCH
Confidence 689998633445566777777777888842 12355889 9999 8899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Q psy2883 79 KYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDY 111 (112)
Q Consensus 79 ~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl~~ 111 (112)
++|++||.+|++|||++|++||++||++|||.|
T Consensus 318 ~~l~~il~~G~~~a~~~a~~t~~~v~~~~g~~~ 350 (351)
T 1yi8_B 318 DAVLRFVTEGTARGREVAAQTLGQVRRAMRLFG 350 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence 999999999999999999999999999999976
No 10
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=99.60 E-value=1.2e-15 Score=117.75 Aligned_cols=87 Identities=24% Similarity=0.290 Sum_probs=64.2
Q ss_pred CCCCCCC-CCC--CCCCCCcccHHHHHHHhhCCCCCcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy2883 1 MYTDPNH-LHI--SDPGKVDGNPVFTYLDQFGTDKKKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRKQLS 75 (112)
Q Consensus 1 a~TDs~~-~~~--~~~~~p~~~nl~~l~~~~~~~~~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~~l~ 75 (112)
|+|||.. +.+ ..+++|++|++++|+.+|... ++.+++++ ++|. |++++++||+.|++.|+++|.|||+||+++.
T Consensus 280 A~td~~~~~~~~~~~~~~P~~~~~~~~l~~~~~~-~~~~~eel~~~~~~G~l~~gdlK~~lae~i~~~l~pirer~~~~~ 358 (392)
T 3jxe_A 280 TLTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEE-DDKKLKERYYACKNGELTCGECKRYLISKIQEFLKEHQRRRKKAE 358 (392)
T ss_dssp C--------------------CHHHHHHHHTTCC-CHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCcccccccccCCCCchhHHHHHHHHHHcC-CcchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899974 332 347899999999999999654 56789999 9999 8899999999999999999999999999999
Q ss_pred hCHHHHHHHHHHHHHH
Q psy2883 76 KDKKYIQDILKIGSEK 91 (112)
Q Consensus 76 ~d~~~l~~il~~Ga~k 91 (112)
++|+++|..|+.+
T Consensus 359 ---~~v~~~l~~g~~~ 371 (392)
T 3jxe_A 359 ---KLVEKFKYTGKLA 371 (392)
T ss_dssp ---TSHHHHHTTSHHH
T ss_pred ---HHHHHHHHcCccc
Confidence 6899999999875
No 11
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=99.57 E-value=2.4e-17 Score=128.59 Aligned_cols=90 Identities=24% Similarity=0.302 Sum_probs=75.9
Q ss_pred CCCCcccHHHHHHHhhCCCCCcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHHHHhhC----HHHHHHHHH
Q psy2883 13 PGKVDGNPVFTYLDQFGTDKKKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKD----KKYIQDILK 86 (112)
Q Consensus 13 ~~~p~~~nl~~l~~~~~~~~~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~~l~~d----~~~l~~il~ 86 (112)
+++|++|+++.++.+|. . +.++++++ ++|. +++++++||+.||+.|+++|.|+|+||++++++ +.++++|+.
T Consensus 337 g~~pd~~~v~~~l~~f~-~-~~~eieel~~~~~~G~~~~~~~K~~La~~i~~~l~~~rer~~~~~~~~~~~~~~~~~~~~ 414 (432)
T 2ip1_A 337 GGNPDVDVAYQYLSFFK-D-DDVFLKECYDKYKSGELLSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKLVW 414 (432)
T ss_dssp CCCTTTCHHHHHHHHHC-C-CHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHSCCCCCC
T ss_pred CCCchHHHHHHHHHHHC-C-CHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHH
Confidence 58899999999999884 4 56788999 9998 779999999999999999999999999999988 888999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy2883 87 IGSEKAQEEAEKTLKRIK 104 (112)
Q Consensus 87 ~Ga~kA~~~A~~tl~~Vk 104 (112)
.|++||+++|.+||++|+
T Consensus 415 ~g~~~a~~~a~~t~~~v~ 432 (432)
T 2ip1_A 415 GEKERLVAPKPKTKQEKK 432 (432)
T ss_dssp SCSCCSSCCC--------
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999999986
No 12
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=99.49 E-value=5e-14 Score=109.12 Aligned_cols=81 Identities=22% Similarity=0.355 Sum_probs=66.3
Q ss_pred CCCCCCC-CCC--CCCCCCcccHHHHHHHhhCCCCCcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy2883 1 MYTDPNH-LHI--SDPGKVDGNPVFTYLDQFGTDKKKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRKQLS 75 (112)
Q Consensus 1 a~TDs~~-~~~--~~~~~p~~~nl~~l~~~~~~~~~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~~l~ 75 (112)
|+|||.. +.+ +.+++|++||++.||++|.. ++.+++++ ++|. +++++++||+.|++.|+++|+|||+||++++
T Consensus 316 A~td~~~~~e~~~~~~g~p~v~~l~~~~~~~~~--~~~~~eei~~~y~~G~l~~g~lK~~Lae~i~~~l~pirer~~~~~ 393 (406)
T 3tze_A 316 AYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLD--DDQELEKYRSGYIKGEITSKEMKEKCVVVIQEFVSRYQESRKRVT 393 (406)
T ss_dssp CCCCCCCC-------CCCGGGCHHHHHHHHHCC--CHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccCCCcccccccccCCCCCcccHHHHHHHHHcC--CcchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899874 333 56899999999999999952 35689999 9999 8899999999999999999999999999998
Q ss_pred hCHHHHHHHH
Q psy2883 76 KDKKYIQDIL 85 (112)
Q Consensus 76 ~d~~~l~~il 85 (112)
+| .|++.+
T Consensus 394 ~d--~~~~~~ 401 (406)
T 3tze_A 394 DD--DLRAFI 401 (406)
T ss_dssp HH--HHHHHH
T ss_pred hh--HHHHhc
Confidence 64 455543
No 13
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=99.48 E-value=8.7e-14 Score=107.42 Aligned_cols=82 Identities=16% Similarity=0.191 Sum_probs=69.3
Q ss_pred CCCCCCC-CCCC--CCCCCcccHHHHHHHhhCCCCCcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy2883 1 MYTDPNH-LHIS--DPGKVDGNPVFTYLDQFGTDKKKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRKQLS 75 (112)
Q Consensus 1 a~TDs~~-~~~~--~~~~p~~~nl~~l~~~~~~~~~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~~l~ 75 (112)
|+||+.. +.+. .|++|++|+++.|+.+|.. ++++++++ ++|. |++++++||+.|++.|+++|.|||+||++++
T Consensus 293 A~td~~~~~~~~~~~~g~p~~~~~~~~~~~~~~--~~~~~eei~~~y~~G~l~~g~~K~~lae~i~~~l~pirer~~~~~ 370 (393)
T 3hv0_A 293 AFSGGQATEEEQRRLGANLDVDVSWQYLRFLME--DDEKLEEIGKKYSSGEMLSGEIKSILVQELVKLTKNHQKNREAIN 370 (393)
T ss_dssp SCCCSCSSSCCC---CCCTTTCHHHHHHHHHCC--CHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred ccCCCCccccccccCCCCcchhHHHHHHHHHcC--ChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899864 3332 4899999999999999852 45789999 9999 8899999999999999999999999999998
Q ss_pred hCHHHHHHHHH
Q psy2883 76 KDKKYIQDILK 86 (112)
Q Consensus 76 ~d~~~l~~il~ 86 (112)
+| .|++++.
T Consensus 371 ~d--~~~~~~~ 379 (393)
T 3hv0_A 371 DD--VIAKFTN 379 (393)
T ss_dssp HH--HHHHHHC
T ss_pred Hh--HHHHHhC
Confidence 75 4887763
No 14
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=99.47 E-value=2.1e-14 Score=110.87 Aligned_cols=88 Identities=18% Similarity=0.191 Sum_probs=54.2
Q ss_pred CCCCCCC---CCCCCCCCCcccHHHHHHHhhCCCCCcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy2883 1 MYTDPNH---LHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRKQLS 75 (112)
Q Consensus 1 a~TDs~~---~~~~~~~~p~~~nl~~l~~~~~~~~~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~~l~ 75 (112)
|+|||.. ...+++++|++||++.|+++|. . ++.+++++ ++|. |+++|++||+.|++.|+++|+|||+||++++
T Consensus 296 A~td~~~~~e~~~~~~g~p~v~~~~~~~~~~~-~-~~~~~eei~~~y~~G~l~~g~lK~~lae~i~~~l~pirer~~~~~ 373 (395)
T 3i05_A 296 AFSGGGATKQEHFLLGANVEVDVPIQWLSFFL-E-DDEELARVKKEYMLGRIMTGEVKKLLINTITAITKTHQEKRKLVT 373 (395)
T ss_dssp --------------------CCHHHHHHHHHC-C-CSHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccCCCccchhhcccCCCCcchhHHHHHHHHHc-C-ChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6799863 2347789999999999999996 2 45789999 9999 8899999999999999999999999999998
Q ss_pred hCHHHHHHHHH----HHHHHH
Q psy2883 76 KDKKYIQDILK----IGSEKA 92 (112)
Q Consensus 76 ~d~~~l~~il~----~Ga~kA 92 (112)
+| .|++.+. .|+++|
T Consensus 374 ~d--~~~~~~~~~~~~~~~~~ 392 (395)
T 3i05_A 374 DE--DVQLFTSTRIMGPAKKA 392 (395)
T ss_dssp HH--HHHHHHSCCCCTTTTC-
T ss_pred Hh--HHHHHhChhcccchhhh
Confidence 64 4666553 455544
No 15
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=99.46 E-value=5.8e-14 Score=109.91 Aligned_cols=81 Identities=15% Similarity=0.208 Sum_probs=68.4
Q ss_pred CCCCCCC-CC--CCCCCCCcccHHHHHHHhhCCCCCcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy2883 1 MYTDPNH-LH--ISDPGKVDGNPVFTYLDQFGTDKKKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRKQLS 75 (112)
Q Consensus 1 a~TDs~~-~~--~~~~~~p~~~nl~~l~~~~~~~~~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~~l~ 75 (112)
|+||+.. +. .+++++|++||++.||.+|. . ++.+++++ ++|. |+++|++||+.|++.|+++|+|||+||++++
T Consensus 360 A~Td~~~~~~~~~~~~g~p~~~~v~~~l~~f~-~-~~~~~eel~~~y~~G~l~~g~lK~~Lae~i~~~l~pirer~~~l~ 437 (451)
T 3foc_A 360 AFSGGRDTEEEHRAFGADLSVDVSVRYLEVFM-K-DDAELEKLKADYKTGKLLTGEVKATLIGILQGLIKEHAERRDKVD 437 (451)
T ss_dssp SCCCSCSSHHHHHTTCCCTTTCHHHHHHHHHC-C-CHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred ccCCCCccchhcccCCCCcchhhHHHHHHHHc-C-CHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899863 22 25689999999999999996 2 45689999 9999 8899999999999999999999999999988
Q ss_pred hCHHHHHHHH
Q psy2883 76 KDKKYIQDIL 85 (112)
Q Consensus 76 ~d~~~l~~il 85 (112)
+| .|++++
T Consensus 438 ~d--~v~~f~ 445 (451)
T 3foc_A 438 TT--MIESFT 445 (451)
T ss_dssp HH--HHHHHH
T ss_pred HH--HHHHhh
Confidence 63 566654
No 16
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=99.37 E-value=5.1e-13 Score=102.47 Aligned_cols=81 Identities=11% Similarity=-0.018 Sum_probs=62.9
Q ss_pred CCCCCCCCCCC---CCCCCcccHHHHHHHhhCCCCCcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy2883 1 MYTDPNHLHIS---DPGKVDGNPVFTYLDQFGTDKKKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRKQLS 75 (112)
Q Consensus 1 a~TDs~~~~~~---~~~~p~~~nl~~l~~~~~~~~~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~~l~ 75 (112)
|+|||..+.++ .||+|++|+++.++..+... ++++++++ ++|. |+++||+||+.|+|.|+++|+|||+||++..
T Consensus 282 a~td~~~~~~~~~~~~G~p~~~~i~~~~l~~~~~-d~~e~~ei~~~y~~G~l~~ge~K~~l~e~l~~~l~p~rer~e~~~ 360 (372)
T 3a04_A 282 ALTGGRATAEEQRRLGGVPEVCSVYHMDLYHLMP-DDGEVKHIYTSCRLGKILCGECKQIAWEKLERFLAEHQSRLEKAK 360 (372)
T ss_dssp CCCSCCSSHHHHHHHCCCGGGCHHHHHHHHTTCC-SHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCCCCcccccccCCCCchhhHHHHHHHccCC-CHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 68998753222 36888889998754333322 55689999 9999 9999999999999999999999999998754
Q ss_pred hCHHHHHHHH
Q psy2883 76 KDKKYIQDIL 85 (112)
Q Consensus 76 ~d~~~l~~il 85 (112)
++++++|
T Consensus 361 ---~~~~kil 367 (372)
T 3a04_A 361 ---TIAWKLV 367 (372)
T ss_dssp ---HHHHTSC
T ss_pred ---HHHHHHh
Confidence 5666654
No 17
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=99.34 E-value=3.7e-13 Score=103.67 Aligned_cols=79 Identities=23% Similarity=0.379 Sum_probs=65.6
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHHHhhCCCCCcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHHHHhhCHH
Q psy2883 2 YTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKK 79 (112)
Q Consensus 2 ~TDs~~~~~~~~~~p~~~nl~~l~~~~~~~~~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~~l~~d~~ 79 (112)
+|||.+ ...+++|++|++++|+.+|. . ++++++++ ++|. |++++++||+.|++.|+++|+|||+||+++++|
T Consensus 302 ~Td~~~--~~~~g~p~~~~v~~~~~~~~-~-~~~~~eei~~~~~~G~l~~g~~K~~lae~i~~~l~pirer~~~~~~~-- 375 (386)
T 3hzr_A 302 NTTEEH--KKLGGQCDIDVSFQLLNIFS-S-DNAQVKDVEEKYSKGELLSGELKKIVSASMKDFIVAYDAKKKPITTA-- 375 (386)
T ss_dssp SSHHHH--HTTCCCGGGCHHHHHHHHHC-S-CHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHH--
T ss_pred CCcccc--cccCCCCccchHHHHHHHHc-C-ChhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 344443 24578999999999999996 3 56789999 9999 889999999999999999999999999998864
Q ss_pred HHHHHHH
Q psy2883 80 YIQDILK 86 (112)
Q Consensus 80 ~l~~il~ 86 (112)
.|++.+.
T Consensus 376 ~~~~~~~ 382 (386)
T 3hzr_A 376 YLKAYIS 382 (386)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 5666543
No 18
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=99.25 E-value=3.1e-11 Score=98.70 Aligned_cols=86 Identities=17% Similarity=0.288 Sum_probs=69.5
Q ss_pred CCCCCCC---CCCCCCCC----CcccHHHHHHHhhCCC----------CCcCcHHHH-HHhH-cCCChHHHHHHHHHHHH
Q psy2883 1 MYTDPNH---LHISDPGK----VDGNPVFTYLDQFGTD----------KKKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQ 61 (112)
Q Consensus 1 a~TDs~~---~~~~~~~~----p~~~nl~~l~~~~~~~----------~~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~ 61 (112)
|+|||.+ ....+++. |+.|+++.++.+|.-. .+..+++++ ++|. +++++++||+.|++.|+
T Consensus 256 A~td~~~~~~~~~~d~g~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~eel~~~y~~G~l~~~dlK~~lae~i~ 335 (690)
T 3p0j_A 256 AYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYARPGAAATIDGTTYATYEDLEQAFVSDEVSEDALKSCLIDEVN 335 (690)
T ss_dssp SCCCSSCCCCCCCCTTCCCCCCSSCCHHHHHHHHTTTTSTTCCEEETTEEESSHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred CcCCCcccccccccCCCCcccCCCCchHHHHHHHhhcccccccccccCCCcchHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 6788864 22233444 5889999999986211 024689999 9999 88999999999999999
Q ss_pred HhhHHHHHHHHHHhhCHHHHHHHHH
Q psy2883 62 DFLFPIRIKRKQLSKDKKYIQDILK 86 (112)
Q Consensus 62 ~~l~pirer~~~l~~d~~~l~~il~ 86 (112)
++|+|||+||+++.++++++++|+.
T Consensus 336 ~~L~Pirer~~~~~~~~~~l~~v~~ 360 (690)
T 3p0j_A 336 ALLEPVRQHFASNEEAHELLEAVKS 360 (690)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchhhHHHHHHHHH
Confidence 9999999999999999999998865
No 19
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=99.00 E-value=1.2e-09 Score=83.85 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=45.5
Q ss_pred cCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHHHHhhCHHHHHHH
Q psy2883 34 KNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDI 84 (112)
Q Consensus 34 ~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~~l~~d~~~l~~i 84 (112)
..+++++ ++|. +++++++||+.|++.|+++|+|||++|++....+++|++|
T Consensus 314 ~~~~eel~~~~~~g~l~~~dlK~~lae~i~~~l~Pire~~~~~~~~~~~l~~v 366 (373)
T 3vgj_A 314 YYTLQELEHDYVNGFIHPLDLKDNVAMYINKLLQPVRDHFQNNIEAKNLLNEI 366 (373)
T ss_dssp ECCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred cccHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 4689999 9999 8899999999999999999999999999877666667665
No 20
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=98.90 E-value=2.5e-09 Score=80.36 Aligned_cols=60 Identities=18% Similarity=0.210 Sum_probs=50.1
Q ss_pred CCCcccHHHHHHHhhC----------------CCCCcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHHH
Q psy2883 14 GKVDGNPVFTYLDQFG----------------TDKKKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRKQ 73 (112)
Q Consensus 14 ~~p~~~nl~~l~~~~~----------------~~~~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~~ 73 (112)
+.++.|+++.++..|. .+.+..+++++ ++|. |++++++||+.|++.|+++|+|||+||++
T Consensus 244 ~~~~~~~~~~~~~~~~~p~~~~~~i~~~~~~G~~~~~~~~~~l~~~~~~g~~~~~~~K~~la~~i~~~l~pir~~~~~ 321 (323)
T 2cyb_A 244 GVVEENPILDIAKYHILPRFGKIVVERDAKFGGDVEYASFEELAEDFKSGQLHPLDLKIAVAKYLNMLLEDARKRLGV 321 (323)
T ss_dssp TCCTTCHHHHHHHHTHHHHHSCEEECCCGGGTCCEEESSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCcChHHHHHHHHhccccCceeEechhhcCCCCCcccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556699999999884 11145689999 9999 78999999999999999999999999974
No 21
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=98.85 E-value=8.9e-09 Score=77.23 Aligned_cols=60 Identities=30% Similarity=0.421 Sum_probs=50.7
Q ss_pred CCCcccHHHHHHHhhC-------------CCCCcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHHH
Q psy2883 14 GKVDGNPVFTYLDQFG-------------TDKKKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRKQ 73 (112)
Q Consensus 14 ~~p~~~nl~~l~~~~~-------------~~~~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~~ 73 (112)
+.|+.|+++.++.+|. ...+..+++++ +.|. +++++++||+.||+.|+++|.|+|+||+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~i~r~~k~g~~~~~~~~eei~~~~~~g~~~~~~~K~~la~~i~~~l~p~r~~~~~ 308 (314)
T 2zp1_A 234 GVVEGNPIMEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESLFKNKELHPMYLKNAVAEELIKILEPIRKRLLE 308 (314)
T ss_dssp TCCTTCHHHHHHHHHCCSSEEECCCGGGTCCEEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcHHHHHHHHhcCCcceeehhhccCCCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4556799999999985 11145689999 9999 88999999999999999999999999973
No 22
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=98.85 E-value=2.7e-09 Score=84.14 Aligned_cols=69 Identities=26% Similarity=0.445 Sum_probs=59.4
Q ss_pred CCCCcccHHHHHHHhhCCCCCcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHHHHhhCHHHHHHHH
Q psy2883 13 PGKVDGNPVFTYLDQFGTDKKKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDIL 85 (112)
Q Consensus 13 ~~~p~~~nl~~l~~~~~~~~~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~~l~~d~~~l~~il 85 (112)
+++|++|+++.++.+|. . ++++++++ ++|. +++++++||+.||+.|+++|.|||+||+++.++ .+++.+
T Consensus 391 g~~pd~~~v~~~l~~ft-~-~~~eieel~~~~~~G~~~~~~~K~~Lae~i~~~l~pirer~~~~~~~--~v~~~~ 461 (477)
T 1r6t_A 391 GGNCDVDVSFMYLTFFL-E-DDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDE--IVKEFM 461 (477)
T ss_dssp CCCTTTCHHHHHHHHHC-C-CHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHTTCCHH--HHHHHT
T ss_pred CCCchHHHHHHHHHHHc-C-CHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHh
Confidence 48899999999999885 4 56788999 9998 779999999999999999999999999998853 355543
No 23
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=98.79 E-value=3.9e-09 Score=82.42 Aligned_cols=69 Identities=26% Similarity=0.445 Sum_probs=59.1
Q ss_pred CCCCcccHHHHHHHhhCCCCCcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHHHHhhCHHHHHHHH
Q psy2883 13 PGKVDGNPVFTYLDQFGTDKKKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDIL 85 (112)
Q Consensus 13 ~~~p~~~nl~~l~~~~~~~~~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~~l~~d~~~l~~il 85 (112)
+++|++|+++.++.+|. . ++++++++ ++|. +++++++||+.||+.|+++|.|+|+||+++.++ .+++.+
T Consensus 344 g~~pd~~~v~~~l~~ft-~-~~~eieel~~~~~~G~~~~~~~K~~LAe~i~~~l~~~rer~~~~~~~--~~~~~~ 414 (437)
T 1r6u_A 344 GGNCDVDVSFMYLTFFL-E-DDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDE--IVKEFM 414 (437)
T ss_dssp CBCTTTCHHHHHHHHHC-C-CHHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHHHHHHHHTCCHH--HHHHHT
T ss_pred CCCccHHHHHHHHHHHc-C-CHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhc
Confidence 47899999999999885 4 56788999 9998 778999999999999999999999999998853 355544
No 24
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=98.69 E-value=5.4e-08 Score=74.32 Aligned_cols=60 Identities=23% Similarity=0.268 Sum_probs=48.8
Q ss_pred CCCcccHHHHHHHhhCCC-----------------CCcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHHH
Q psy2883 14 GKVDGNPVFTYLDQFGTD-----------------KKKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRKQ 73 (112)
Q Consensus 14 ~~p~~~nl~~l~~~~~~~-----------------~~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~~ 73 (112)
+.++.+.++.++.+|.-. -+.++++++ ++|. +++++++||+.||+.|+++|.|+|+||++
T Consensus 269 ~~~~~~~v~~~~~~~~f~~~~~~~~i~r~~~~G~~~~~~~~~el~~~~~~g~~~~~~lK~~la~~l~~~l~pir~~~~~ 347 (364)
T 2cya_A 269 KQVQGNPVLEIARYILFARDGFTLRVDRPAKYGGPVEYTSYEELERDYTDGRLHPLDLKNAVAESLIEVVRPIRGAVLG 347 (364)
T ss_dssp TCCTTCHHHHHHHHTTTTSTTCCEECC--------CEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcHHHHHHHHhcccccCceeeeccccccCCCChHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445567788888876410 034589999 9999 77999999999999999999999999984
No 25
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=98.69 E-value=4.1e-08 Score=75.26 Aligned_cols=61 Identities=21% Similarity=0.274 Sum_probs=49.7
Q ss_pred CCCcccHHHHHHHhhCCCC-----------------CcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy2883 14 GKVDGNPVFTYLDQFGTDK-----------------KKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRKQL 74 (112)
Q Consensus 14 ~~p~~~nl~~l~~~~~~~~-----------------~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~~l 74 (112)
+.++.+.++.++.+|.-.. +..+++++ ++|. +++++++||+.||+.|+++|.|+|+||++.
T Consensus 282 ~~~~~~~v~~~~~~~~f~~~~~~~~i~~~~~~gg~~~~~~~~el~~~~~~g~~~~~~~K~~La~~l~~~l~pir~~~~~~ 361 (375)
T 2cyc_A 282 REVRYNPVLDWVEYIIFREEPTEFTVHRPAKFGGDVTYTTFEELKRDFAEGKLHPLDLKNAVAEYLINLLEPIRRYFEKH 361 (375)
T ss_dssp TCCSSCHHHHHHHHTTTSSSSCCEEECCCGGGTCCEEESSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTHHHHHHHHHC
T ss_pred CCCCCChHHHHHHHHhcCCCCcceeeecchhccCcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4566788888888774110 14679999 9999 779999999999999999999999999853
No 26
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=98.67 E-value=1.3e-07 Score=72.91 Aligned_cols=53 Identities=19% Similarity=0.262 Sum_probs=45.9
Q ss_pred CcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy2883 33 KKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGS 89 (112)
Q Consensus 33 ~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~~l~~d~~~l~~il~~Ga 89 (112)
+..+++++ ++|. +++++++||+.||+.|+++|.|+|++|+ .+++ +++++..|.
T Consensus 301 ~~~~i~el~~~~~~g~~~~~~~K~~La~~i~~~l~p~r~~~~---~~~~-~~~~~~~~~ 355 (394)
T 2dlc_X 301 TYKSFEEMKLAFKEEKLSPPDLKIGVADAINELLEPIRQEFA---NNKE-FQEASEKGY 355 (394)
T ss_dssp EESSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHH---HCHH-HHHHHHHHC
T ss_pred CHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHHH---CCHH-HHHHHhccC
Confidence 56789999 9999 6799999999999999999999999987 4554 888887663
No 27
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=98.58 E-value=1e-07 Score=72.45 Aligned_cols=59 Identities=17% Similarity=0.270 Sum_probs=46.1
Q ss_pred CCCCcccHHHHHHHhh-----C-----CCCCcCcHHHH-HHhHcCCChHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy2883 13 PGKVDGNPVFTYLDQF-----G-----TDKKKNCQYEI-SLYQGGLGDVTIKKYLIEVMQDFLFPIRIKRKQL 74 (112)
Q Consensus 13 ~~~p~~~nl~~l~~~~-----~-----~~~~~~~~~~i-~~~~~~~~~~~~K~~lae~i~~~l~pirer~~~l 74 (112)
++.|+ +.++.++..+ . .. +..+++++ ++|. ++++++||+.|++.|+++|.|||++|.+-
T Consensus 262 ~~~~~-~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~el~~~~~-~~~~~~~K~~la~~l~~~l~pir~~~~~~ 331 (348)
T 2j5b_A 262 DETFD-NPIFEYIKYLLLRWFGTLNLCGK-IYTDIESIQEDFS-SMNKRELKTDVANYINTIIDLVREHFKKP 331 (348)
T ss_dssp SSSTT-CHHHHHHHHTHHHHHSCEEETTE-EESSHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHHHHHTTSG
T ss_pred CCCCC-CchHhHHHHhhhhhhcccccccC-CcchHHHHHHHHc-ccCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566 6666655442 1 11 45789999 9998 89999999999999999999999999864
No 28
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=98.57 E-value=8.9e-09 Score=80.29 Aligned_cols=79 Identities=20% Similarity=0.292 Sum_probs=67.1
Q ss_pred cccHHHHHHHhhCCCCCcCcHHHH-HHhHcCCChHHHHHHHHHHHHHhhH----HHHHHHHHHhhCHHHHHHHHHH----
Q psy2883 17 DGNPVFTYLDQFGTDKKKNCQYEI-SLYQGGLGDVTIKKYLIEVMQDFLF----PIRIKRKQLSKDKKYIQDILKI---- 87 (112)
Q Consensus 17 ~~~nl~~l~~~~~~~~~~~~~~~i-~~~~~~~~~~~~K~~lae~i~~~l~----pirer~~~l~~d~~~l~~il~~---- 87 (112)
..++++.++++| +..+.+++ +.+.. ++++||+.||+.|++.+. |||+||+++.+ ++||++||..
T Consensus 258 ~d~~v~~~l~~f----t~~~~eei~~~~~~--~~~~~K~~LA~~i~~~l~~~~~pirerr~~~~~-~~~v~~il~~~~~~ 330 (432)
T 1h3f_A 258 PDPLLPSYFRLL----TDLEEEEIEALLKA--GPVPAHRVLARLLTAAYALPQIPPRIDRAFYES-LGYAWEAFGRDKEA 330 (432)
T ss_dssp CGGGHHHHHHHH----CCCCHHHHHHHHHH--CHHHHHHHHHHHHHHHHHSSSCCSCCSHHHHHH-TTCCGGGTTCCTTC
T ss_pred CccHHHHHHHHc----CCCCHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccchHHHHHHHhhc-hHHHHHHHhhcccc
Confidence 346789999999 77788999 77764 899999999999999999 99999999999 9999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy2883 88 GSEKAQEEAEKTLKRI 103 (112)
Q Consensus 88 Ga~kA~~~A~~tl~~V 103 (112)
|.+.|+ .|.+.-+.+
T Consensus 331 g~~~a~-~a~~~~~~~ 345 (432)
T 1h3f_A 331 GPEEVR-RAEARYDEV 345 (432)
T ss_dssp SCHHHH-HHHHHHHHH
T ss_pred CHHHHH-HHHHHHHHh
Confidence 888774 455555444
No 29
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=98.38 E-value=6.8e-07 Score=68.40 Aligned_cols=40 Identities=15% Similarity=0.144 Sum_probs=37.1
Q ss_pred CcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHH
Q psy2883 33 KKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRK 72 (112)
Q Consensus 33 ~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~ 72 (112)
+.++++++ ++|. +++++++||+.||+.|+++|.|+|++|+
T Consensus 288 ~~~~i~el~~~~~~g~~~~~~~K~~La~~i~~~l~p~r~~~~ 329 (372)
T 1n3l_A 288 TYTAYVDLEKDFAAEVVHPGDLKNSVEVALNKLLDPIREKFN 329 (372)
T ss_dssp EESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHHHHhc
Confidence 44689999 9999 7799999999999999999999999998
No 30
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=97.73 E-value=0.00025 Score=58.13 Aligned_cols=62 Identities=18% Similarity=0.224 Sum_probs=49.5
Q ss_pred CCCCCCCcccHHHHHHHhhCC---------------CCCcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHH
Q psy2883 10 ISDPGKVDGNPVFTYLDQFGT---------------DKKKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRK 72 (112)
Q Consensus 10 ~~~~~~p~~~nl~~l~~~~~~---------------~~~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~ 72 (112)
|.+|+ .+-|.++.|+.++.. +-+-.+++++ ++|. |.+..+++|..|++.|++.|+|+|++|+
T Consensus 591 ~c~p~-ve~np~l~~~~~~~~~~~~~~i~r~~~~Gg~~~~~~~eel~~~y~~G~lhp~dlK~~la~~l~~~l~p~Re~~~ 669 (690)
T 3p0j_A 591 YSAPN-EEANPVISVAQHLLAQHGALSIERGEANGGNVSYNTPEALVADCGSGALHPADLKAAVLQLLLDRSAQARALLN 669 (690)
T ss_dssp CCCTT-CSCSHHHHHHHHHHHHHSCEEECCCTTTTCCEEESSHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCC-CCCChHHHHHHHHhccCCceEEechhhhCCCCCccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34454 455778888887621 1023689999 9999 8899999999999999999999999998
No 31
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=97.57 E-value=8.5e-05 Score=55.74 Aligned_cols=55 Identities=11% Similarity=0.053 Sum_probs=44.8
Q ss_pred CcccHHHHHHHhhCCCCCcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHH
Q psy2883 16 VDGNPVFTYLDQFGTDKKKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRK 72 (112)
Q Consensus 16 p~~~nl~~l~~~~~~~~~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~ 72 (112)
+..+.+++++.+|... +.++++++ ++|. +. ++++||+.||+.|+++|.|.++..+
T Consensus 263 ~~d~~v~~~l~~~~~~-~~~~i~~l~~~~~~g~-~~~~~K~~La~~i~~~l~~~~~~~~ 319 (322)
T 2yxn_A 263 TADADVYRFLKFFTFM-SIEEINALEEEDKNSG-KAPRAQYVLAEQVTRLVHGEEGLQA 319 (322)
T ss_dssp CCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHS-SCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHcC-CHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3446677777777544 67789999 9998 65 8889999999999999999998765
No 32
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=96.88 E-value=0.0005 Score=52.90 Aligned_cols=53 Identities=2% Similarity=-0.096 Sum_probs=41.4
Q ss_pred CcccHHHHHHHhhCCCCCcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHHH
Q psy2883 16 VDGNPVFTYLDQFGTDKKKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRKQ 73 (112)
Q Consensus 16 p~~~nl~~l~~~~~~~~~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~~ 73 (112)
+++.+++.++..+ +.++++++ ++|. +. +++++|+.||+.|+++|.+.++..+-
T Consensus 324 ~~v~~~l~~ft~l----~~~ei~~l~~~~~~g~-~~~~~K~~LA~~v~~~lhg~~~~~~a 378 (392)
T 1y42_X 324 QEVENLLKLFTFM----PISEITKTMEEHIKDP-SKRVAQHTLAREVVTLVHGKQEASAA 378 (392)
T ss_dssp TTHHHHHHHHCCC----CHHHHHHHHHHHHHCG-GGCHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred hhHHHHHHHHHhC----ChhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 4555555555444 67789999 9998 55 88899999999999999998877654
No 33
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=96.83 E-value=0.00052 Score=52.14 Aligned_cols=52 Identities=15% Similarity=-0.051 Sum_probs=39.2
Q ss_pred HHHHHHhhCCCCCcCcHHHH-HHhHcCCChHHHHHHHHHHHHHhhHHHHHHHHH
Q psy2883 21 VFTYLDQFGTDKKKNCQYEI-SLYQGGLGDVTIKKYLIEVMQDFLFPIRIKRKQ 73 (112)
Q Consensus 21 l~~l~~~~~~~~~~~~~~~i-~~~~~~~~~~~~K~~lae~i~~~l~pirer~~~ 73 (112)
+++++.+|... ++++++++ ++|..+.++++||+.||+.|+++|...++....
T Consensus 287 v~~~l~~~t~~-~~~~i~~l~~~~~~g~~~~~~K~~La~~v~~~l~g~~~~~~a 339 (356)
T 2pid_A 287 VERYLKLFTFL-PLPEIDHIMQLHVKEPERRGPQKRLAAEVTKLVHGREGLDSA 339 (356)
T ss_dssp HHHHHHHHCCC-CHHHHHHHHHHHHHCGGGCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CchHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 34444544333 67789999 999833588999999999999999988776543
No 34
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=96.00 E-value=0.0043 Score=48.11 Aligned_cols=53 Identities=17% Similarity=0.137 Sum_probs=40.1
Q ss_pred cHHHHHHHhhCCCCCcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHHH
Q psy2883 19 NPVFTYLDQFGTDKKKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRKQ 73 (112)
Q Consensus 19 ~nl~~l~~~~~~~~~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~~ 73 (112)
+.+++++.+|... +.++++++ ++|. +. +++++|+.||+.|++++-+.++..+-
T Consensus 261 ~~v~~~l~l~t~~-~~~ei~~l~~~~~~g~-~~~~~K~~LA~~v~~~~hg~~~~~~a 315 (419)
T 2ts1_A 261 RDVIRYLKYFTFL-SKEEIEALEQELREAP-EKRAAQKTLAEEVTKLVHGEEALRQA 315 (419)
T ss_dssp HHHHHHHHHHCCC-CHHHHHHHHHHHHHCT-TSCHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred hhHHHHHHHHHcC-CHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 3455555555433 66788999 9998 55 78899999999999999987775544
No 35
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=95.92 E-value=0.0035 Score=48.60 Aligned_cols=52 Identities=15% Similarity=0.072 Sum_probs=39.5
Q ss_pred cHHHHHHHhhCCCCCcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHH
Q psy2883 19 NPVFTYLDQFGTDKKKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRK 72 (112)
Q Consensus 19 ~nl~~l~~~~~~~~~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~ 72 (112)
+.+++++.+|... +.++++++ ++|. +. +++++|+.||+.|++++-+.++..+
T Consensus 262 ~~v~~~l~~~t~~-~~~ei~~l~~~~~~g~-~~~~~K~~La~~v~~~~hg~~~~~~ 315 (420)
T 1jil_A 262 EDVIKFLKYFTFL-GKEEIDRLEQSKNEAP-HLREAQKTLAEEVTKFIHGEDALND 315 (420)
T ss_dssp HHHHHHHHHHCCC-CHHHHHHHHHHHHHCG-GGCHHHHHHHHHHHHHHHCHHHHHH
T ss_pred hhHHHHHHHHHcC-CHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHcCHHHHHH
Confidence 3455555655433 66788999 9998 54 7889999999999999988776554
No 36
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=95.70 E-value=0.0051 Score=47.87 Aligned_cols=51 Identities=12% Similarity=0.039 Sum_probs=38.8
Q ss_pred HHHHHHhhCCCCCcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHHHHHHH
Q psy2883 21 VFTYLDQFGTDKKKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRKQ 73 (112)
Q Consensus 21 l~~l~~~~~~~~~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pirer~~~ 73 (112)
+++++.+|... +.++++++ ++|. +. +++++|+.||+.|++++-+.++..+-
T Consensus 265 v~~~l~l~t~~-~~~ei~~l~~~~~~g~-~~~~~K~~LA~~v~~~~hg~~~~~~a 317 (432)
T 2jan_A 265 VIRYLRWFTFL-SADELAELEQATAQRP-QQRAAQRRLASELTVLVHGEAATAAV 317 (432)
T ss_dssp HHHHHHHHSCC-CHHHHHHHHHHHHHCG-GGCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-ChHHHHHHHHHHhhcc-CHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 44555555433 67789999 9998 54 88899999999999999987765543
No 37
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=59.32 E-value=17 Score=19.09 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q psy2883 80 YIQDILKIGSEKAQEEAEKTLKRIKNAMNI 109 (112)
Q Consensus 80 ~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl 109 (112)
+++.-|++=-.+-+++.+.||.+--..+||
T Consensus 7 everklkefvrrhqeitqetlheyaqklgl 36 (52)
T 1y66_A 7 EVERKLKEFVRRHQEITQETLHEYAQKLGL 36 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 344445555555666666777666666665
No 38
>4e6k_G BFD, bacterioferritin-associated ferredoxin; protein complex, iron storage, iron binding, iron mobilizati ferritin, iron homeostasis; HET: HEM; 2.00A {Pseudomonas aeruginosa}
Probab=54.52 E-value=13 Score=21.49 Aligned_cols=33 Identities=12% Similarity=-0.006 Sum_probs=26.5
Q ss_pred CcHHHH-HHhHcCCChHHHHHHHHHHHHHhhHHH
Q psy2883 35 NCQYEI-SLYQGGLGDVTIKKYLIEVMQDFLFPI 67 (112)
Q Consensus 35 ~~~~~i-~~~~~~~~~~~~K~~lae~i~~~l~pi 67 (112)
.+++++ +....+.+||.|+..+.+.|.+.+.+.
T Consensus 23 ~t~~~v~~~t~aGt~CG~C~~~i~~il~~~~~~~ 56 (73)
T 4e6k_G 23 CSYREVREATGVGTQCGKCASLAKQVVRETLNDL 56 (73)
T ss_dssp CSHHHHHHHHCTTSSSCTTHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHhCCCCCCCchHHHHHHHHHHHHhhc
Confidence 589999 766656689999999999988777654
No 39
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=53.57 E-value=14 Score=20.32 Aligned_cols=34 Identities=29% Similarity=0.238 Sum_probs=26.6
Q ss_pred CcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHH
Q psy2883 33 KKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFP 66 (112)
Q Consensus 33 ~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~p 66 (112)
+..++.++ +.|+ .++.+.--|..|.+.|.+++..
T Consensus 11 ~klkV~eLK~~L~~rGL~~~G~KaeLieRL~~~l~~ 46 (55)
T 2do1_A 11 HKLKLAELKQECLARGLETKGIKQDLIHRLQAYLEE 46 (55)
T ss_dssp TTSCHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHH
T ss_pred HHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc
Confidence 45689999 9898 7777666799998888887763
No 40
>2a7o_A Huntingtin interacting protein B; SRI domain, SRI, HSRI, SET2, HSET2, phosphoctd associating protein, SET2 RPB1-interacting domain, PCID, PCAP; NMR {Homo sapiens}
Probab=47.17 E-value=6.7 Score=24.86 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHhhHHHHHH
Q psy2883 49 DVTIKKYLIEVMQDFLFPIRIK 70 (112)
Q Consensus 49 ~~~~K~~lae~i~~~l~pirer 70 (112)
...|+..++..|+.+|.|.|..
T Consensus 19 k~~Fr~eis~~Vv~~L~pYRk~ 40 (112)
T 2a7o_A 19 KEVFRKEMSQFIVQCLNPYRKP 40 (112)
T ss_dssp HHHHHHHHHHHHHHHHTTTSST
T ss_pred HHHHHHHHHHHHHHHhcccccC
Confidence 3468899999999999999874
No 41
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=46.34 E-value=22 Score=20.85 Aligned_cols=33 Identities=18% Similarity=0.073 Sum_probs=26.2
Q ss_pred CcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhH
Q psy2883 33 KKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLF 65 (112)
Q Consensus 33 ~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~ 65 (112)
+..++.++ ++++ .|+...-.|..|.+.|.+++.
T Consensus 27 ~klkVaeLK~eLk~RGL~~sG~KaeLIeRL~~~~~ 61 (75)
T 2kvu_A 27 DDMKVAELKQELKLRSLPVSGTKTELIERLRAYQD 61 (75)
T ss_dssp TTSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHH
T ss_pred HHCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 45689999 9998 788766679888888877754
No 42
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=45.47 E-value=19 Score=19.36 Aligned_cols=33 Identities=27% Similarity=0.220 Sum_probs=25.7
Q ss_pred CcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhH
Q psy2883 33 KKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLF 65 (112)
Q Consensus 33 ~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~ 65 (112)
+..++.++ +++. .++...-.|..|.+.+.+++.
T Consensus 11 ~klkV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~~~ 45 (50)
T 1zrj_A 11 RRLKVNELREELQRRGLDTRGLKAELAERLQAALS 45 (50)
T ss_dssp GGSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHC
T ss_pred HHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh
Confidence 45688999 9998 788766679888888877653
No 43
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=45.32 E-value=46 Score=21.01 Aligned_cols=36 Identities=14% Similarity=0.092 Sum_probs=29.5
Q ss_pred CcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhHHHH
Q psy2883 33 KKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLFPIR 68 (112)
Q Consensus 33 ~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~pir 68 (112)
...+++++ +-|+ .++...--|.+|.+.|.++|....
T Consensus 38 ~kLtVaELK~~cr~~GL~~sGkKaeLi~RI~~yl~~~~ 75 (114)
T 2rnn_A 38 ELLKVSELKDICRSVSFPVSGRKAVLQDLIRNFLQNAL 75 (114)
T ss_dssp TTCCHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHcCCCcCCcHHHHHHHHHHHHHhcc
Confidence 55789999 9998 777766679999999999988644
No 44
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=41.72 E-value=35 Score=18.30 Aligned_cols=33 Identities=12% Similarity=-0.002 Sum_probs=25.3
Q ss_pred CcCcHHHH-HHhH-cCCChHHHHHHHHHHHHHhhH
Q psy2883 33 KKNCQYEI-SLYQ-GGLGDVTIKKYLIEVMQDFLF 65 (112)
Q Consensus 33 ~~~~~~~i-~~~~-~~~~~~~~K~~lae~i~~~l~ 65 (112)
+..++.++ +.+. .|+...-.|..|.+.+.++..
T Consensus 6 ~kltV~eLK~~Lk~RGL~~~G~KadLieRL~~~~~ 40 (51)
T 1h1j_S 6 SSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKDDE 40 (51)
T ss_dssp GGCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHH
T ss_pred HHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHH
Confidence 45689999 9998 788766678888888876654
No 45
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=40.43 E-value=28 Score=15.86 Aligned_cols=19 Identities=11% Similarity=0.128 Sum_probs=12.1
Q ss_pred HHHHHHhhHHHHHHHHHHh
Q psy2883 57 IEVMQDFLFPIRIKRKQLS 75 (112)
Q Consensus 57 ae~i~~~l~pirer~~~l~ 75 (112)
++.+-..|+..|+|...++
T Consensus 3 adelykeledlqerlrklr 21 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLR 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555566777777766655
No 46
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=39.59 E-value=1e+02 Score=22.05 Aligned_cols=28 Identities=11% Similarity=0.293 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2883 78 KKYIQDILKIGSEKAQEEAEKTLKRIKN 105 (112)
Q Consensus 78 ~~~l~~il~~Ga~kA~~~A~~tl~~Vk~ 105 (112)
-+.|..-|.-=++..+......++++|.
T Consensus 90 ~eeLr~~L~p~~eelr~kl~~~veelk~ 117 (273)
T 3s84_A 90 ADSLQASLRPHADELKAKIDQNVEELKG 117 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3344444444444444444444444443
No 47
>3a7m_A Flagellar protein FLIT; UP-DOWN helix bundle, bacterial flagellum biogenesis, chaper cytoplasm, repressor, transcription; 3.20A {Salmonella typhimurium}
Probab=39.59 E-value=55 Score=20.66 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy2883 79 KYIQDILKIGSEKAQEEAEKTLKRIKNAMN 108 (112)
Q Consensus 79 ~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~G 108 (112)
..|.+||.+-++ .|..++.-|++..+.||
T Consensus 66 ~lL~~IL~nDae-Ir~Ll~~rl~~L~~li~ 94 (122)
T 3a7m_A 66 GYIKQTLDNEQL-LKGLLQQRLDELSSLIG 94 (122)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhHHH-HHHHHHHHHHHHHHHHH
Confidence 368899999888 89999999999999887
No 48
>2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A rhogap, protein phosphorylation, alternative splicing, anti-oncogene, cell cycle; NMR {Homo sapiens}
Probab=36.89 E-value=61 Score=18.64 Aligned_cols=33 Identities=18% Similarity=0.347 Sum_probs=27.5
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2883 73 QLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKN 105 (112)
Q Consensus 73 ~l~~d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~ 105 (112)
.+.+.|++-+=|--.|.++|+..=++-+++.|.
T Consensus 36 kL~~~pE~~~yv~L~G~~kaqrlF~rHi~kLk~ 68 (69)
T 2k85_A 36 KMQASPEYQDYVYLEGTQKAKKLFLQHIHRLKH 68 (69)
T ss_dssp HHTTSHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHhcCccHHHHHHHhChHHHHHHHHHHHHHhhc
Confidence 445778888888889999999999999988775
No 49
>3h3m_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, flagellum; 2.50A {Bordetella bronchiseptica}
Probab=36.66 E-value=68 Score=20.38 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q psy2883 79 KYIQDILKIGSEKAQEEAEKTLKRIKNAMNI 109 (112)
Q Consensus 79 ~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl 109 (112)
..|.+||.+-++ .|..++.-|++..+.||=
T Consensus 79 ~lL~~IL~nDae-IR~Ll~prl~eL~~li~~ 108 (126)
T 3h3m_A 79 DLLVRILENDAA-VRDLALPQLARLSDLLGR 108 (126)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhHHH-HHHHHHHHHHHHHHHHHH
Confidence 368899999888 899999999999999875
No 50
>3nkz_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MC midwest center for structural genomics; HET: MSE PG4; 2.11A {Yersinia enterocolitica subsp}
Probab=34.22 E-value=74 Score=20.04 Aligned_cols=30 Identities=17% Similarity=0.219 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q psy2883 79 KYIQDILKIGSEKAQEEAEKTLKRIKNAMNI 109 (112)
Q Consensus 79 ~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl 109 (112)
..|.+||.+-++ .|..++.-|++..+.||=
T Consensus 69 ~lL~~IL~nDae-IR~Ll~~rl~eL~~li~~ 98 (123)
T 3nkz_A 69 EKLRAILDNEIE-IKRLLQLRLDRLSDLVGQ 98 (123)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhHHH-HHHHHHHHHHHHHHHHHH
Confidence 478999999888 899999999999998874
No 51
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Probab=33.34 E-value=81 Score=24.94 Aligned_cols=59 Identities=15% Similarity=0.029 Sum_probs=43.7
Q ss_pred HHHHHHHHHHH---------hhHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Q psy2883 52 IKKYLIEVMQD---------FLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDY 111 (112)
Q Consensus 52 ~K~~lae~i~~---------~l~pirer~~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl~~ 111 (112)
|-+.-|++|.+ ....|+..++++...-+++.+||.+-.. -..+-..-|.+|++..|-.+
T Consensus 420 lse~Qa~aIl~mrL~rLt~le~~ki~~E~~~l~~~i~~l~~iL~~~~~-~~~~i~~el~~i~~~~g~~R 487 (500)
T 3lpx_A 420 LTAEQAKAIVDLQLYKLSGMEHDKILSEYKALLDLIAELMHILATPAR-LMEVICEELVAIRDEFGDER 487 (500)
T ss_dssp -CHHHHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHCCCC
T ss_pred CCHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHhCCCC
Confidence 44556666654 2345788889988888899999988665 66777888999999988543
No 52
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=32.51 E-value=39 Score=26.13 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHh
Q psy2883 54 KYLIEVMQDFLFPIRIKRKQLS 75 (112)
Q Consensus 54 ~~lae~i~~~l~pirer~~~l~ 75 (112)
+.||+.|-..|+.||+||+++-
T Consensus 252 ~~La~~Vd~lL~kIr~KY~eyg 273 (432)
T 3k1t_A 252 EQLAEKVDSLLAKIRRKYAEYG 273 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 7799999999999999999974
No 53
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=31.93 E-value=42 Score=21.82 Aligned_cols=54 Identities=17% Similarity=0.147 Sum_probs=40.3
Q ss_pred HHHHHHHHHhhHH--HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Q psy2883 54 KYLIEVMQDFLFP--IRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDY 111 (112)
Q Consensus 54 ~~lae~i~~~l~p--irer~~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl~~ 111 (112)
..+.+.|...|.- .+.+|+-|. .|+-++..|.++-...+++.+..||.+..|.+
T Consensus 48 ~eim~~L~kRL~~k~~~vk~KaL~----lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g 103 (140)
T 1vdy_A 48 KEFSEFILKRLDNKSPIVKQKALR----LIKYAVGKSGSEFRREMQRNSVAVRNLFHYKG 103 (140)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHH----HHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCC
T ss_pred HHHHHHHHHHhcCCCcceeehHHH----HHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCC
Confidence 3455555555432 345777766 78888999999999999999999999888764
No 54
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=31.38 E-value=24 Score=23.57 Aligned_cols=46 Identities=20% Similarity=0.209 Sum_probs=28.2
Q ss_pred hhHHHHHH-HHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy2883 63 FLFPIRIK-RKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMN 108 (112)
Q Consensus 63 ~l~pirer-~~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~G 108 (112)
.|.|+.+. ...+..+...|..-|..-.+..|......+.+++..+|
T Consensus 81 ~L~P~t~el~~~l~~~~e~Lr~~L~~d~EelR~~l~p~~~el~~~l~ 127 (165)
T 1gs9_A 81 QLTPVAEETRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLG 127 (165)
T ss_dssp SCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444333 34444555667777777677777777777777776665
No 55
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=30.74 E-value=32 Score=15.99 Aligned_cols=19 Identities=16% Similarity=0.293 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHcC
Q psy2883 90 EKAQEEAEKTLKRIKNAMN 108 (112)
Q Consensus 90 ~kA~~~A~~tl~~Vk~~~G 108 (112)
++.|+..+.-|++|+.+++
T Consensus 4 e~mr~Q~~~lveKvq~a~~ 22 (26)
T 1oeg_A 4 EDMQRQWAGLVEKVQAAVG 22 (26)
T ss_dssp HHTTTHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 4456677777788877765
No 56
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=30.73 E-value=1.2e+02 Score=23.82 Aligned_cols=47 Identities=15% Similarity=0.073 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Q psy2883 64 LFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDY 111 (112)
Q Consensus 64 l~pirer~~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl~~ 111 (112)
...+++.++++...-++|.++|.+-.. -..+...-|.+|++..|=.+
T Consensus 418 ~~kl~~E~~~l~~~i~~l~~iL~~~~~-~~~~i~~el~~i~~~yg~~R 464 (470)
T 3ilw_A 418 RQRIIDDLAKIEAEIADLEDILAKPER-QRGIVRDELAEIVDRHGDDR 464 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHhCCCC
Confidence 445888899999888899999988655 56888899999999988543
No 57
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=30.47 E-value=1.7e+02 Score=21.94 Aligned_cols=47 Identities=17% Similarity=0.156 Sum_probs=29.9
Q ss_pred CCChHHHHHHHHHHHHHhhHHHHHHHHHHhhCHHHHHHHHHHHH--HHHHHHHHH
Q psy2883 46 GLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGS--EKAQEEAEK 98 (112)
Q Consensus 46 ~~~~~~~K~~lae~i~~~l~pirer~~~l~~d~~~l~~il~~Ga--~kA~~~A~~ 98 (112)
.++..+.+..+..++.+.|.- .|..||+..+.|+.... .+||+.|++
T Consensus 338 kL~~~e~~~~v~~~v~~~l~~------~l~~np~~a~~i~~k~~~aa~ar~aa~k 386 (391)
T 1ei1_A 338 KLVSSEVKSAVEQQMNELLAE------YLLENPTDAKIVVGKIIDAARAREAARR 386 (391)
T ss_dssp SBCCHHHHHHHHHHHHHHHHH------HHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHH------HHHHCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366667777777776666653 23468888888877764 445555543
No 58
>2l3i_A Aoxki4A, antimicrobial peptide in spider venom; antimicrobial protein; NMR {Araneae}
Probab=28.29 E-value=53 Score=15.30 Aligned_cols=21 Identities=10% Similarity=0.069 Sum_probs=15.4
Q ss_pred cCCChHHHHHHHHHHHHHhhH
Q psy2883 45 GGLGDVTIKKYLIEVMQDFLF 65 (112)
Q Consensus 45 ~~~~~~~~K~~lae~i~~~l~ 65 (112)
.++.|..||+.+...+...|.
T Consensus 6 kswkckafkqrvlkrllamlr 26 (30)
T 2l3i_A 6 KSWKCKAFKQRVLKRLLAMLR 26 (30)
T ss_dssp SCSCCCHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHH
Confidence 467788888888777766654
No 59
>1dmu_A BGLI restriction endonuclease; protein-DNA complex, active site calcium IONS, alpha/beta structure, A:A mismatch, hydrolase/DNA complex; HET: DNA; 2.20A {Bacillus subtilis} SCOP: c.52.1.4
Probab=27.51 E-value=1.7e+02 Score=20.97 Aligned_cols=39 Identities=13% Similarity=0.144 Sum_probs=28.5
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2883 67 IRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKN 105 (112)
Q Consensus 67 irer~~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~ 105 (112)
-+..++++..|++.+.++-+.|-+-..++-..++.+++.
T Consensus 13 Y~~~r~yl~~N~~~li~~E~y~l~~~~n~i~~n~eei~a 51 (299)
T 1dmu_A 13 YNQNKQYLEDNPEIQEKIELYGLNLLNEVISDNEEEIRA 51 (299)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777788778777777777777777777777654
No 60
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=26.57 E-value=64 Score=17.33 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=18.3
Q ss_pred HHHHHHhhHHHHHHHHHHhhCHHHHHHHH
Q psy2883 57 IEVMQDFLFPIRIKRKQLSKDKKYIQDIL 85 (112)
Q Consensus 57 ae~i~~~l~pirer~~~l~~d~~~l~~il 85 (112)
.|.+...+...|.|++.+..--+.+..-|
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777888887775444444433
No 61
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=25.93 E-value=1.1e+02 Score=24.11 Aligned_cols=48 Identities=10% Similarity=0.128 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Q psy2883 63 FLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDY 111 (112)
Q Consensus 63 ~l~pirer~~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl~~ 111 (112)
....+++.+.++...-++|.++|.+- .+...+...-|.++++..|=.+
T Consensus 431 e~~kl~~E~~~l~~~i~~l~~iL~~~-~~~~~~i~~el~~i~~~y~~~R 478 (496)
T 2nov_A 431 DVVVLQEEEAELREKIAMLAAIIGDE-RTMYNLMKKELREVKKKFATPR 478 (496)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHhCCCC
Confidence 34557888888888888999999884 4467889999999999988543
No 62
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=25.62 E-value=2.1e+02 Score=21.36 Aligned_cols=47 Identities=19% Similarity=0.245 Sum_probs=29.8
Q ss_pred CCChHHHHHHHHHHHHHhhHHHHHHHHHHhhCHHHHHHHHHHH--HHHHHHHHHH
Q psy2883 46 GLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIG--SEKAQEEAEK 98 (112)
Q Consensus 46 ~~~~~~~K~~lae~i~~~l~pirer~~~l~~d~~~l~~il~~G--a~kA~~~A~~ 98 (112)
.++..+.+..+...|.+.|.-. |..||+..+.|+... +.+||+.|++
T Consensus 337 kL~~~e~~~~v~~~v~~~l~~~------l~~np~~a~~i~~k~~~~~~aR~aa~k 385 (390)
T 1kij_A 337 KLLNPEAGTAVGQVVYERLLEI------LEENPRIAKAVYEKALRAAQAREAARK 385 (390)
T ss_dssp SBCCHHHHHHHHHHHHHHHHHH------HHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHH------HHHCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777766666666522 336888888888776 4445555554
No 63
>3pnl_B PTS-dependent dihydroxyacetone kinase, ADP-bindin DHAL; structural genomics, montreal-kingston bacterial structural initiative, BSGI; HET: ADP; 2.20A {Escherichia coli} SCOP: a.208.1.0 PDB: 2btd_A*
Probab=25.51 E-value=76 Score=21.78 Aligned_cols=42 Identities=24% Similarity=0.261 Sum_probs=29.2
Q ss_pred HHHhhHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2883 60 MQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLK 101 (112)
Q Consensus 60 i~~~l~pirer~~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~ 101 (112)
|++-|.|.-+.+.+...+..-+.+++....+.|++-++.|-+
T Consensus 131 mlD~l~pa~~a~~~~~~~~~~~~~~l~~a~~aA~~g~e~T~~ 172 (211)
T 3pnl_B 131 MCDVWVPVVESLRQSSEQNLSVPVALEAASSIAESAAQSTIT 172 (211)
T ss_dssp THHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhchh
Confidence 567777777777765544345677888877778777777644
No 64
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=25.41 E-value=1.5e+02 Score=24.37 Aligned_cols=47 Identities=15% Similarity=0.074 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Q psy2883 64 LFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDY 111 (112)
Q Consensus 64 l~pirer~~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl~~ 111 (112)
...+++.+.++...-++|++||.+-.. -..+...-|.+|++..|=.+
T Consensus 639 ~~kl~~E~~~l~~~i~~l~~iL~~~~~-~~~~i~~el~~i~~~yg~~R 685 (692)
T 2xcs_B 639 RDKIEAEYNELLNYISELETILADEEV-LLQLVRDELTEIRDRFGDDR 685 (692)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHcCCCC
Confidence 455888899998888899999998544 66788889999999988543
No 65
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=25.39 E-value=1.5e+02 Score=24.49 Aligned_cols=47 Identities=23% Similarity=0.246 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Q psy2883 64 LFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDY 111 (112)
Q Consensus 64 l~pirer~~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl~~ 111 (112)
...+++.++++...-++|++||.+-.. -..+..+-|.++++..|=.+
T Consensus 404 ~~kl~~E~~eL~~~i~~l~~iL~~~~~-l~~~i~~EL~~i~~kygd~R 450 (716)
T 1zvu_A 404 EMKIRGEQSELEKERDQLQGILASERK-MNNLLKKELQADAQAYGDDR 450 (716)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHhCCCc
Confidence 445888889998888899999988665 55788888999999888543
No 66
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=25.37 E-value=1.3e+02 Score=20.58 Aligned_cols=56 Identities=4% Similarity=0.030 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhhHHHH---HH----H-HHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q psy2883 51 TIKKYLIEVMQDFLFPIR---IK----R-KQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNI 109 (112)
Q Consensus 51 ~~K~~lae~i~~~l~pir---er----~-~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl 109 (112)
..|......|...+.... .. + ..++ ..|.+.+.+.....|..|-.+|-.+.+.+|=
T Consensus 161 ~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~ii---p~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 161 QIRMECTQLFNASMKEEKDGYSTLQRYLKDEVV---PIVIQIVNDTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp HHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHH---HHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHH---HHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence 577777777777775433 22 3 3444 4678888888888999999999999999983
No 67
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=25.18 E-value=76 Score=19.35 Aligned_cols=40 Identities=13% Similarity=0.167 Sum_probs=25.7
Q ss_pred cHHHH-HHhH-cCCChHHHHHHHHHHH-HHhhHHHHHHHHHHhh
Q psy2883 36 CQYEI-SLYQ-GGLGDVTIKKYLIEVM-QDFLFPIRIKRKQLSK 76 (112)
Q Consensus 36 ~~~~i-~~~~-~~~~~~~~K~~lae~i-~~~l~pirer~~~l~~ 76 (112)
.-.+| .+|+ .|-....|.. +|..+ ...=..+.+||.+|++
T Consensus 40 ~DR~IL~~cQ~~G~s~~tFa~-iA~~L~Nks~nqV~~RFq~Lm~ 82 (95)
T 1ug2_A 40 ADRVILTMCQEQGAQPHTFSV-ISQQLGNKTPVEVSHRFRELMQ 82 (95)
T ss_dssp HHHHHHHHHHHTTSCTTTHHH-HHHHHSSCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHhcCCChhHHHH-HHHHHccCCHHHHHHHHHHHHH
Confidence 34567 8898 5543333443 66666 4555678899999883
No 68
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=24.59 E-value=1.7e+02 Score=23.16 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Q psy2883 64 LFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDY 111 (112)
Q Consensus 64 l~pirer~~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl~~ 111 (112)
...+++.+.++...-++|.++|.+-. +-..+...-|.++++..|=.+
T Consensus 456 ~~kl~~E~~~l~~ei~~l~~iL~~~~-~~~~~i~~el~~i~~~yg~~R 502 (514)
T 2inr_A 456 IVALEGEHKELEALIKQLRHILDNHD-ALLNVIKEELNEIKKKFKSER 502 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHHHHcCCCC
Confidence 35578888888888889999998544 367888999999999988543
No 69
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=23.47 E-value=68 Score=18.04 Aligned_cols=15 Identities=33% Similarity=0.215 Sum_probs=12.8
Q ss_pred cCCChHHHHHHHHHH
Q psy2883 45 GGLGDVTIKKYLIEV 59 (112)
Q Consensus 45 ~~~~~~~~K~~lae~ 59 (112)
.+.+.-+||+.|.+.
T Consensus 20 TGag~~dcKkAL~e~ 34 (64)
T 2cp9_A 20 TGYSFVNCKKALETC 34 (64)
T ss_dssp HCCCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHc
Confidence 678899999999875
No 70
>2vqx_A Metalloproteinase; thermolysin-like structure, zinc, protease, hydrolase, metalloprotease; 1.82A {Serratia proteamaculans}
Probab=23.47 E-value=31 Score=25.82 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy2883 78 KKYIQDILKIGSEKAQEEAEKTLKRIKNAMN 108 (112)
Q Consensus 78 ~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~G 108 (112)
|-.|++|.+.|.+..|..|.+||..+...+.
T Consensus 12 p~~l~~~~~~~~~~~~~~a~~tl~~~~~~~~ 42 (341)
T 2vqx_A 12 PYMLRRIIEHGSLPQRDCALHTLNHVQSLLG 42 (341)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHCC-----
T ss_pred hHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Confidence 5568899999999999999999987766554
No 71
>3d55_A Antitoxin, uncharacterized protein RV3357/MT3465; tetramer, toxin neutraliSer, toxin inhibitor; 2.13A {Mycobacterium tuberculosis} PDB: 3cto_A 3oei_A* 3oei_E*
Probab=22.99 E-value=50 Score=19.32 Aligned_cols=38 Identities=8% Similarity=0.124 Sum_probs=10.0
Q ss_pred HHHhhCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHcCcC
Q psy2883 72 KQLSKDKKYIQDILKIGSEKAQEEA---EKTLKRIKNAMNID 110 (112)
Q Consensus 72 ~~l~~d~~~l~~il~~Ga~kA~~~A---~~tl~~Vk~~~Gl~ 110 (112)
.+++.+|..... |..|-+.++.-- ..++.++++.+|+.
T Consensus 50 ~~ll~~~~~~~~-l~~a~~~~~~G~~~~~~~l~el~~~lg~~ 90 (91)
T 3d55_A 50 VYLLRSPENARR-LMEAVARDKAGHSAFTKSVDELREMAGGE 90 (91)
T ss_dssp HHHTTSHHHHHH-HHHHHTC----------------------
T ss_pred HHHHhChHHHHH-HHHHHHHHHcCCCccCCCHHHHHHHhCCC
Confidence 345666654444 556654443333 34889999999974
No 72
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=22.72 E-value=1.1e+02 Score=18.14 Aligned_cols=31 Identities=23% Similarity=0.120 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHH
Q psy2883 63 FLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKT 99 (112)
Q Consensus 63 ~l~pirer~~~l~~d~~~l~~il~~Ga~kA~~~A~~t 99 (112)
+...++++|.+++ .+.|..+.+.+...|++-
T Consensus 3 ~m~~~~~~Y~~iL------~~yl~~~~E~~Ly~~q~f 33 (84)
T 1w53_A 3 FREVIEQRYHQLL------SRYIAELTETSLYQAQKF 33 (84)
T ss_dssp HHHHHHHHHHHHH------HHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------HHHHHcccHHHHHHHHHh
Confidence 4566788888755 445555555555555543
No 73
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=22.05 E-value=84 Score=15.46 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy2883 79 KYIQDILKIGSEKAQEEAE 97 (112)
Q Consensus 79 ~~l~~il~~Ga~kA~~~A~ 97 (112)
+.++.+|..+.+-..++|+
T Consensus 8 dKvEeLl~~~~~L~~EV~R 26 (34)
T 2bni_A 8 DKLEEILSKGHHICNELAR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHH
Confidence 4677788887777766664
No 74
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=22.05 E-value=1.8e+02 Score=19.43 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=40.6
Q ss_pred HHHHHHHHHhh-----HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Q psy2883 54 KYLIEVMQDFL-----FPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDY 111 (112)
Q Consensus 54 ~~lae~i~~~l-----~pirer~~~l~~d~~~l~~il~~Ga~kA~~~A~~tl~~Vk~~~Gl~~ 111 (112)
..+.+.|+..| +.-|.=|+-|. -|+=.|..|+++.-.-++..+..|+..--|.|
T Consensus 69 ~~Im~~L~kRl~~~~~k~WR~vyKaL~----LLeYLl~nGse~vv~~~r~~i~~I~~L~~F~y 127 (176)
T 1xgw_A 69 PELMNMLWSRMLKDNKKNWRRVYKSLL----LLAYLIRNGSERVVTSAREHIYDLRSLENYHF 127 (176)
T ss_dssp HHHHHHHHHHHHSSCTTCHHHHHHHHH----HHHHHHHHSCHHHHHHHHHTHHHHHGGGGCCC
T ss_pred HHHHHHHHHHHhccCCchhHHHHHHHH----HHHHHHHhCCHHHHHHHHHhHHHHHhhccCee
Confidence 45667777765 35666666666 78889999999988888888888887766644
No 75
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=20.34 E-value=2.1e+02 Score=20.72 Aligned_cols=38 Identities=26% Similarity=0.170 Sum_probs=26.5
Q ss_pred cCCChHHHHHHHHHHHHHhhHHHHHHHHHHhhCHHHHHHHHH-----HHHHHHHHHHH
Q psy2883 45 GGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILK-----IGSEKAQEEAE 97 (112)
Q Consensus 45 ~~~~~~~~K~~lae~i~~~l~pirer~~~l~~d~~~l~~il~-----~Ga~kA~~~A~ 97 (112)
.|.|.-+||++|.|. -.|-+.-.++|+ .|..+|...|.
T Consensus 15 TGagmmdCKKAL~e~---------------~GD~ekAie~LR~~a~kkG~akAaKka~ 57 (291)
T 1xb2_B 15 TGYSFINCKKALETC---------------GGDLKQAESWLHKQAQKEGWSKAARLHG 57 (291)
T ss_dssp HCCCHHHHHHHHHHT---------------TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hCCCHHHHHHHHHHc---------------CCCHHHHHHHHHHHHHhccHHHHHHhcc
Confidence 678888999999874 245455555665 58888776654
No 76
>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} SCOP: a.4.5.30 PDB: 1onv_A
Probab=20.18 E-value=44 Score=19.90 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=25.2
Q ss_pred CcCcHHHH-HHhH---cCCChHHHHHHHHHHHHHhhHHHH
Q psy2883 33 KKNCQYEI-SLYQ---GGLGDVTIKKYLIEVMQDFLFPIR 68 (112)
Q Consensus 33 ~~~~~~~i-~~~~---~~~~~~~~K~~lae~i~~~l~pir 68 (112)
..-+..|+ ..|+ .++.+.+.++.+|+.+- .|.|+|
T Consensus 31 kPmTT~dLl~KFK~r~~~~~~~e~v~~~a~ILK-ki~p~q 69 (82)
T 1nha_A 31 KPMTTKDLLKKFQTKKTGLSSEQTVNVLAQILK-RLNPER 69 (82)
T ss_dssp SCBCHHHHHHHTTSSCCSSCHHHHHHHHHHHHH-HHCCEE
T ss_pred CCccHHHHHHHHHHhcccCCCHHHHHHHHHHHH-HcCHHh
Confidence 34578899 9997 45788888888887665 566655
No 77
>4hlb_A Uncharacterized protein; alpha-lytic protease prodomain-like fold, structural genomic center for structural genomics, JCSG; 1.80A {Desulfovibrio piger}
Probab=20.05 E-value=80 Score=19.02 Aligned_cols=18 Identities=17% Similarity=0.449 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHcCcC
Q psy2883 93 QEEAEKTLKRIKNAMNID 110 (112)
Q Consensus 93 ~~~A~~tl~~Vk~~~Gl~ 110 (112)
..+|.+.+.+.++.+||.
T Consensus 70 saiasrsirelkerfgfd 87 (115)
T 4hlb_A 70 SAIASRSIRELKERFGFD 87 (115)
T ss_dssp HHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 467888888888888885
Done!