RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2883
(112 letters)
>gnl|CDD|183400 PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed.
Length = 333
Score = 152 bits (387), Expect = 6e-47
Identities = 62/113 (54%), Positives = 83/113 (73%), Gaps = 2/113 (1%)
Query: 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQ-GGLGDVTIKKYLIEV 59
MYTDPNH+ + DPGKV+GN VFTYLD F DK + + + + YQ GGLGDV K+YL EV
Sbjct: 221 MYTDPNHIRVEDPGKVEGNVVFTYLDAFDPDKAEVAELK-AHYQRGGLGDVKCKRYLEEV 279
Query: 60 MQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDYF 112
+Q+ L PIR +R + +KD Y+ +ILK GSEKA+E A +TL +K+AM ++YF
Sbjct: 280 LQELLAPIRERRAEFAKDPGYVLEILKAGSEKAREVAAQTLSEVKDAMGLNYF 332
>gnl|CDD|234866 PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed.
Length = 333
Score = 90.5 bits (226), Expect = 4e-23
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 1 MYTDPNHLHISDPG---KVDGNPVFTYLDQFGTDKKKNC--QYEISLYQGGLGDVTIKKY 55
TD L K + + + T + + +YE GG G KK
Sbjct: 221 AVTDSERLREIRYDLPNKPEVSNLLTIYSALSGESIEELEAEYE----AGGKGYGDFKKD 276
Query: 56 LIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDYF 112
L E + +FL PIR + ++L D Y+ +IL G+EKA+ A KTLK ++ AM +
Sbjct: 277 LAEAVVEFLAPIRERYEELLADPAYLDEILAEGAEKARAVASKTLKEVREAMGLLRK 333
>gnl|CDD|223258 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 314
Score = 74.9 bits (185), Expect = 2e-17
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 1 MYTDP-NHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEV 59
TD + GK + +F F D + E G LG KK L E
Sbjct: 224 AATDGPTLIEYRKGGKPEVCNLFEIYSAFFEDDSI-LEIEAEYRGGELGCGECKKELAEA 282
Query: 60 MQDFLFPIRIKRKQLSKDKKYIQDILKIGSEK 91
+Q+FL PI+ +R++L +D Y+ DIL+ G+EK
Sbjct: 283 IQEFLKPIQERREELREDPAYLDDILRKGAEK 314
>gnl|CDD|232888 TIGR00233, trpS, tryptophanyl-tRNA synthetase. This model
represents tryptophanyl-tRNA synthetase. Some members of
the family have a pfam00458 domain amino-terminal to the
region described by this model [Protein synthesis, tRNA
aminoacylation].
Length = 327
Score = 63.9 bits (156), Expect = 3e-13
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 1 MYTDPN----HLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYL 56
TD H PG + ++ YL F D K + + G LG KK L
Sbjct: 217 AATDGGRVTLFEHREKPGVPNLLVIYQYLSFFLIDDDKLKEIYEAYKSGKLGYGECKKAL 276
Query: 57 IEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAM 107
IEV+Q+FL I+ +R + ++ + IL+ G++KA+E A KTL + AM
Sbjct: 277 IEVLQEFLKEIQERRAE--IAEEILDKILEPGAKKARETANKTLADVYKAM 325
>gnl|CDD|183401 PRK12283, PRK12283, tryptophanyl-tRNA synthetase; Reviewed.
Length = 398
Score = 54.2 bits (131), Expect = 7e-10
Identities = 30/115 (26%), Positives = 62/115 (53%), Gaps = 9/115 (7%)
Query: 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQG----GLGDVTIKKYL 56
M TDP + +DPG + PV+ L Q +D++ ++ + +G G+G + K+ +
Sbjct: 289 MPTDPARVRRTDPGDPEKCPVWQ-LHQVYSDEE-TKEW---VQKGCRSAGIGCLECKQPV 343
Query: 57 IEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDY 111
I+ + P+R + ++ D ++ I+ G EKA++ A +T++ ++ AM + Y
Sbjct: 344 IDAILREQQPMRERAQKYEDDPSLVRAIVADGCEKARKVARETMRDVREAMGLSY 398
>gnl|CDD|183592 PRK12556, PRK12556, tryptophanyl-tRNA synthetase; Provisional.
Length = 332
Score = 50.1 bits (120), Expect = 2e-08
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 12 DPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVMQDFLFPIRIKR 71
+P + + +FT +F T+++ E Y+ G+G +KK L V+ L R K
Sbjct: 236 EPKDPETSALFTIYKEFATEEEVQSMRE--KYETGIGWGDVKKELFRVVDRELAGPREKY 293
Query: 72 KQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNID 110
+ + + L+ G+E+A+E A+ L IK A+ +
Sbjct: 294 AMYMNEPSLLDEALEKGAERAREIAKPNLAEIKKAIGFE 332
>gnl|CDD|215478 PLN02886, PLN02886, aminoacyl-tRNA ligase.
Length = 389
Score = 46.0 bits (109), Expect = 6e-07
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 51 TIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAM 107
K L + + + L PI+++ +++ D Y+ +LK G++ A E A++TL + AM
Sbjct: 326 DFKPLLTDALIEHLSPIQVRYEEIMSDPSYLDSVLKEGADAAAEIADRTLANVYQAM 382
>gnl|CDD|173903 cd00806, TrpRS_core, catalytic core domain of tryptophanyl-tRNA
synthetase. Tryptophanyl-tRNA synthetase (TrpRS)
catalytic core domain. TrpRS is a homodimer which
attaches Tyr to the appropriate tRNA. TrpRS is a class I
tRNA synthetases, so it aminoacylates the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains class I characteristic
HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 280
Score = 37.2 bits (87), Expect = 5e-04
Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 1 MYTDPNH--LHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQ-GGLGDVTIKKYLI 57
TD G N V Y F D ++ EI Y+ GGLG KK L
Sbjct: 217 AATDGGRTEHRRDGGGPGVSNLVEIYSAFFNDDDEE--LEEIDEYRSGGLGYGECKKLLA 274
Query: 58 EVMQDF 63
E +Q+F
Sbjct: 275 EAIQEF 280
>gnl|CDD|238601 cd01196, INT_VanD, VanD integrase, IntD, and related integrases,
DNA breaking-rejoining enzymes, integrase/recombinases,
N- and C-terminal domains. This CD includes various
bacterial integrases including those similar to IntD, a
putative integrase-like protein, a component of the
vanD glycopeptide resistance cluster in Enterococcus
faecium BM4339. Members of this CD are predominantly
bacterial in origin.
Length = 263
Score = 31.7 bits (72), Expect = 0.054
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 38 YEISLYQGGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILK 86
+E LY+ L T+ YL V+Q FL + + L + K Y+Q+ K
Sbjct: 1 FEEYLYKNNLSKNTVSSYLRTVVQYFLNGKELTKPNLLEYKGYLQENFK 49
>gnl|CDD|237036 PRK12284, PRK12284, tryptophanyl-tRNA synthetase; Reviewed.
Length = 431
Score = 31.1 bits (71), Expect = 0.082
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 13 PGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVMQDFLFPIRIKRK 72
P +G+ +F F T ++ G+G K+ L E + L P+R + +
Sbjct: 237 PKDTEGSALFQLYQAFATPEE--TAAFRQALADGIGWGDAKQRLFERIDRELAPMRERYE 294
Query: 73 QLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNA 106
L I+DIL G+ KA+ A L ++ A
Sbjct: 295 ALIARPADIEDILLAGAAKARRIATPFLAELREA 328
>gnl|CDD|238394 cd00771, ThrRS_core, Threonyl-tRNA synthetase (ThrRS) class II core
catalytic domain. ThrRS is a homodimer. It is
responsible for the attachment of threonine to the 3' OH
group of ribose of the appropriate tRNA. This domain is
primarily responsible for ATP-dependent formation of the
enzyme bound aminoacyl-adenylate. Class II assignment is
based upon its structure and the presence of three
characteristic sequence motifs in the core domain.
Length = 298
Score = 29.8 bits (68), Expect = 0.20
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 11/61 (18%)
Query: 54 KYLIEVMQDF-LFPIRIKRKQLS-KDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDY 111
+ EV DF F +++ LS + +K+I GS++ E+AE L+ + + Y
Sbjct: 161 DLIKEVYSDFGFFDYKVE---LSTRPEKFI------GSDEVWEKAEAALREALEEIGLPY 211
Query: 112 F 112
Sbjct: 212 E 212
>gnl|CDD|237050 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed.
Length = 575
Score = 29.4 bits (67), Expect = 0.30
Identities = 5/26 (19%), Positives = 14/26 (53%)
Query: 87 IGSEKAQEEAEKTLKRIKNAMNIDYF 112
+G ++ E+A + L+ + ++Y
Sbjct: 365 VGDDEVWEKATEALREALEELGLEYV 390
>gnl|CDD|222640 pfam14273, DUF4360, Domain of unknown function (DUF4360). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria and
eukaryotes. Proteins in this family are typically
between 200 and 228 amino acids in length. There is a
conserved GCP sequence motif near the N-terminus.
Length = 184
Score = 29.3 bits (66), Expect = 0.34
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 12/45 (26%)
Query: 14 GKVDGN-PVFTYL-DQFG---------TDKKKNCQYEISL-YQGG 46
V + + D F TDK+KNCQ ++L Y GG
Sbjct: 24 TSVSPDKTTVSIGFDNFQAYIGPGTSPTDKRKNCQLHLNLKYPGG 68
>gnl|CDD|234752 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.
Length = 638
Score = 28.9 bits (66), Expect = 0.44
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 11/59 (18%)
Query: 56 LIEVMQDFLFP-IRIKRKQLS-KDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDYF 112
+++V +DF F +K LS + +K I GS++ ++AE LK + + +DY
Sbjct: 404 ILDVYKDFGFEDYEVK---LSTRPEKRI------GSDEMWDKAEAALKEALDELGLDYE 453
>gnl|CDD|224250 COG1331, COG1331, Highly conserved protein containing a thioredoxin
domain [Posttranslational modification, protein
turnover, chaperones].
Length = 667
Score = 28.9 bits (65), Expect = 0.47
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 12/68 (17%)
Query: 57 IEVMQDFLFPIRIKRKQLSKDKKYIQDI--LKI----------GSEKAQEEAEKTLKRIK 104
+E ++ L R KRKQ S+D K + D L I G + E AE+ I
Sbjct: 385 LERAREKLLAAREKRKQPSRDDKVLTDWNGLMIAALAEAGRVLGDPEYLEAAERAADFIL 444
Query: 105 NAMNIDYF 112
+ + +D
Sbjct: 445 DNLYVDRL 452
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic
compound extrusion (MATE)-like proteins similar to
Bacillus subtilis yoeA. The integral membrane proteins
from the MATE family are involved in exporting
metabolites across the cell membrane and are responsible
for multidrug resistance (MDR) in many bacteria and
animals. A number of family members are involved in the
synthesis of peptidoglycan components in bacteria.
Length = 431
Score = 28.2 bits (64), Expect = 0.90
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 65 FPIRIKRKQLSKDKKYIQDILKIG 88
P ++ K DK+ +++ILKIG
Sbjct: 208 LPFKLSLKDFRFDKEILKEILKIG 231
>gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase. This family of
alanyl-tRNA synthetases is limited to the archaea, and
is a subset of those sequences identified by the model
pfam07973 covering the second additional domain (SAD) of
alanyl and threonyl tRNA synthetases.
Length = 902
Score = 27.7 bits (62), Expect = 1.4
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 7/40 (17%)
Query: 72 KQLSKDKKYIQDILKIGSEK-------AQEEAEKTLKRIK 104
+L ++K YI DIL + EK + E+ LK K
Sbjct: 393 PELKENKDYILDILDLEEEKYRETLERGRRIVERLLKTKK 432
>gnl|CDD|182284 PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase;
Provisional.
Length = 413
Score = 27.4 bits (61), Expect = 1.7
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 72 KQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNID 110
K LSK K QD L E A+ A+ +K I A+ D
Sbjct: 260 KVLSKLKNGYQDSLFTSPEVARNVAKPLVKYIDKALVTD 298
>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane].
Length = 835
Score = 27.3 bits (61), Expect = 2.1
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 5/43 (11%)
Query: 60 MQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKR 102
+ L + + +Q + + + K QEEAE +
Sbjct: 15 SRRELLTAESAQLE-----AALQLLQEAVNSKRQEEAEPAAEE 52
>gnl|CDD|221190 pfam11727, ISG65-75, Invariant surface glycoprotein. This family
is found in Trypanosome species, and appears to be one
of two invariant surface glycoproteins, ISG65 and ISG75.
that are found in the mammalian stage of the parasitic
protozoan. the sequence suggests the two families are
polypeptides with N-terminal signal sequences,
hydrophilic extracellular domains, single trans-membrane
alpha-helices and short cytoplasmic domains. they are
both expressed in the bloodstream form but not in the
midgut stage. Both polypeptides are distributed over the
entire surface of the parasite.
Length = 286
Score = 27.1 bits (60), Expect = 2.2
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 71 RKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNA 106
++ K K I + L ++KA EAEK + +K A
Sbjct: 102 KEICEKAKDKIDEALP-EAKKAGREAEKLAEEVKEA 136
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug
and toxic compound extrusion (MATE) proteins. The
integral membrane proteins from the MATE family are
involved in exporting metabolites across the cell
membrane and are responsible for multidrug resistance
(MDR) in many bacteria and animals. MATE has also been
identified as a large multigene family in plants, where
the proteins are linked to disease resistance. A number
of family members are involved in the synthesis of
peptidoglycan components in bacteria.
Length = 435
Score = 26.7 bits (60), Expect = 2.6
Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 55 YLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIG 88
+L + + ++I+ + D+KYI++ILK+G
Sbjct: 205 FLYALKKKKGLFLKIRILKR-PDRKYIKEILKLG 237
>gnl|CDD|218615 pfam05504, Spore_GerAC, Spore germination B3/ GerAC like,
C-terminal. The GerAC protein of the Bacillus subtilis
spore is required for the germination response to
L-alanine. Members of this family are thought to be
located in the inner spore membrane. Although the
function of this family is unclear, they are likely to
encode the components of the germination apparatus that
respond directly to this germinant, mediating the
spore's response.
Length = 171
Score = 26.4 bits (59), Expect = 2.9
Identities = 8/37 (21%), Positives = 21/37 (56%)
Query: 76 KDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDYF 112
+ K ++ + K ++ ++E EK +K+++ +D F
Sbjct: 90 FNPKELKKLEKALEKEIKKEIEKLIKKLQKEYKVDIF 126
>gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 464
Score = 26.4 bits (59), Expect = 3.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 89 SEKAQEEAEKTLKRIKNAMN 108
SE+ EEA+K L+R+ NA+
Sbjct: 307 SEELLEEAKKALERLYNALR 326
>gnl|CDD|227584 COG5259, RSC8, RSC chromatin remodeling complex subunit RSC8
[Chromatin structure and dynamics / Transcription].
Length = 531
Score = 26.4 bits (58), Expect = 3.4
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 69 IKRKQLSKDKKYIQDILKIGSEKAQEEA---EKTLKRIKNAM 107
I R+ ++ I+ L G EKA+ +A E+ ++R++N +
Sbjct: 385 INRESQEHIEEVIEYALDSGKEKAKLQATNEERKMERLRNVL 426
>gnl|CDD|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.
Length = 463
Score = 26.6 bits (60), Expect = 3.4
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 89 SEKAQEEAEKTLKRIKNA 106
SE+A E+A+K L+R+ NA
Sbjct: 305 SEEALEQAKKALERLYNA 322
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 26.2 bits (58), Expect = 4.7
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 68 RIKRKQLSKDK-KYIQDILKIGSEKAQEEAEKTLKR 102
R+ +K+ K++ K ++++K E A EE EK +R
Sbjct: 233 RVHKKEKLKEELKEFEELVKADPEAALEELEKLERR 268
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic
compound extrusion (MATE)-like proteins similar to
Thermotoga marina NorM. The integral membrane proteins
from the MATE family are involved in exporting
metabolites across the cell membrane and are responsible
for multidrug resistance (MDR) in many bacteria and
animals. A number of family members are involved in the
synthesis of peptidoglycan components in bacteria.
Length = 432
Score = 25.9 bits (58), Expect = 4.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 65 FPIRIKRKQLSKDKKYIQDILKIG 88
PI+I K D+K I+ +L+IG
Sbjct: 209 LPIKISFKGFRLDRKIIKKLLRIG 232
>gnl|CDD|227830 COG5543, COG5543, Uncharacterized conserved protein [Function
unknown].
Length = 1400
Score = 26.1 bits (57), Expect = 5.0
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 49 DVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQE 94
V +++ +E MQ F R K L++ + D EK +E
Sbjct: 361 GVGLRRRFLESMQHFFIRSRSMLKSLARYFRKFPDEQLWLKEKVEE 406
>gnl|CDD|99799 cd06202, Nitric_oxide_synthase, The ferredoxin-reductase (FNR) like
C-terminal domain of the nitric oxide synthase (NOS)
fuses with a heme-containing N-terminal oxidase domain.
The reductase portion is similar in structure to NADPH
dependent cytochrome-450 reductase (CYPOR), having an
inserted connecting sub-domain within the FAD binding
portion of FNR. NOS differs from CYPOR in a requirement
for the cofactor tetrahydrobiopterin and unlike most
CYPOR is dimeric. Nitric oxide synthase produces nitric
oxide in the conversion of L-arginine to L-citruline.
NOS has been implicated in a variety of processes
including cytotoxicity, anti-inflamation,
neurotransmission, and vascular smooth muscle
relaxation.
Length = 406
Score = 26.1 bits (58), Expect = 5.1
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 7/33 (21%)
Query: 72 KQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIK 104
++ K K Y+QD+LK E+AE +
Sbjct: 322 REPGKPKTYVQDLLK-------EQAESVYDALV 347
>gnl|CDD|237216 PRK12821, PRK12821, aspartyl/glutamyl-tRNA amidotransferase subunit
C-like protein; Provisional.
Length = 477
Score = 26.0 bits (57), Expect = 5.6
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 8/59 (13%)
Query: 60 MQDFLFPIRIKRKQLSKDKKYIQDILKIGS--------EKAQEEAEKTLKRIKNAMNID 110
+Q LFP K+ +K ++ + ++ EK Q E + K ID
Sbjct: 373 LQSPLFPKHWTSKKQQLNKDELKKLARLVMFDLDDAELEKLQVEFKDITSSFKQVEKID 431
>gnl|CDD|224247 COG1328, NrdD, Oxygen-sensitive ribonucleoside-triphosphate
reductase [Nucleotide transport and metabolism].
Length = 700
Score = 25.8 bits (57), Expect = 5.7
Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 22/111 (19%)
Query: 5 PNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVMQDFL 64
PN L + + V TY D + + + + + + G + + F
Sbjct: 278 PNTLKDAPGVQTGFTTVGTYGD-YEEEARLIQEALLDVMIEGDAN----------GKPFT 326
Query: 65 FPI---RIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRI-KNAMNIDY 111
FP ++ + D+ Q A K KR N +N D+
Sbjct: 327 FPKLIFSLREGLNKDENDPNYDL-------FQLAAAKFGKRYFPNMLNYDW 370
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic
compound extrusion (MATE)-like proteins similar to
Streptococcus aureus MepA. The integral membrane
proteins from the MATE family are involved in exporting
metabolites across the cell membrane and are responsible
for multidrug resistance (MDR) in many bacteria and
animals. This subfamily includes Streptococcus aureus
MepA and Vibrio vulnificus VmrA and functions most
likely as a multidrug efflux pump.
Length = 426
Score = 25.9 bits (58), Expect = 5.7
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 67 IRIKRKQLSKDKKYIQDILKIGS 89
+++ + K I++IL +G
Sbjct: 211 LKLSLLRFKLSLKIIKEILALGF 233
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the
multidrug and toxic compound extrusion (MATE) proteins,
similar to Methanocaldococcus jannaschii MJ0709. The
integral membrane proteins from the MATE family are
involved in exporting metabolites across the cell
membrane and are responsible for multidrug resistance
(MDR) in many bacteria and animals. A number of family
members are involved in the synthesis of peptidoglycan
components in bacteria.
Length = 441
Score = 25.2 bits (56), Expect = 8.8
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 55 YLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIG 88
Y V +D + + K DKK ++DILK+G
Sbjct: 205 YWFFVKKDTY--VSLSLKNFKFDKKIVKDILKVG 236
>gnl|CDD|217914 pfam04129, Vps52, Vps52 / Sac2 family. Vps52 complexes with Vps53
and Vps54 to form a multi- subunit complex involved in
regulating membrane trafficking events.
Length = 511
Score = 25.5 bits (56), Expect = 8.8
Identities = 10/46 (21%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 52 IKKYLIEVMQDF---LFPIRIKRKQLSKDKKYIQDILKIGSEKAQE 94
I++Y+++ ++ F + +I + L K K + + +L A E
Sbjct: 145 IREYILQKIKTFRKPMTNYQIIQNALLKYKFFYEFLLDNNRSLALE 190
>gnl|CDD|240234 PTZ00027, PTZ00027, 60S ribosomal protein L6; Provisional.
Length = 190
Score = 25.1 bits (55), Expect = 8.9
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 50 VTIKKYLIEVMQDFL-FPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAM 107
VT+ E+ + F P+ IK LSKD KYI+ + G+ IKN M
Sbjct: 25 VTVTGKYGELTRSFRHLPVDIK---LSKDGKYIKVEMWFGTPSHLACIRTVCSHIKNMM 80
>gnl|CDD|235382 PRK05270, PRK05270, galactose-1-phosphate uridylyltransferase;
Provisional.
Length = 493
Score = 25.2 bits (56), Expect = 8.9
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 52 IKKY---LIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAE--KTLKRIKNA 106
IKK LIEVM + P R+K ++L + +KY+ + K QE AE K I
Sbjct: 393 IKKENIGLIEVMGLAILPGRLK-EELEEVEKYLLGEANEVAAKHQEWAEQLKAKYGITTK 451
Query: 107 MNID 110
N++
Sbjct: 452 ENVE 455
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.139 0.399
Gapped
Lambda K H
0.267 0.0682 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,792,007
Number of extensions: 507931
Number of successful extensions: 799
Number of sequences better than 10.0: 1
Number of HSP's gapped: 790
Number of HSP's successfully gapped: 93
Length of query: 112
Length of database: 10,937,602
Length adjustment: 76
Effective length of query: 36
Effective length of database: 7,566,698
Effective search space: 272401128
Effective search space used: 272401128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)