RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2883
(112 letters)
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint
center for struc genomics, JCSG, protein structure
initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga
maritima}
Length = 340
Score = 132 bits (335), Expect = 2e-39
Identities = 34/111 (30%), Positives = 61/111 (54%)
Query: 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVM 60
M TDP + SDPG + PV+ Y F ++++ +G V KK L++ M
Sbjct: 230 MMTDPARVRRSDPGNPENCPVWKYHQAFDISEEESKWVWEGCTTASIGCVDCKKLLLKNM 289
Query: 61 QDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDY 111
+ L PI +++ +D Y+ D++ G++KA+E A KT++ ++ AMN+ +
Sbjct: 290 KRKLAPIWENFRKIDEDPHYVDDVIMEGTKKAREVAAKTMEEVRRAMNLMF 340
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus
radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Length = 351
Score = 130 bits (329), Expect = 3e-38
Identities = 46/109 (42%), Positives = 68/109 (62%)
Query: 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVM 60
MYTDP HL SDPG+V+GNPVFT+LD F D + + GGLGDV +KK+LI+V+
Sbjct: 240 MYTDPGHLRASDPGRVEGNPVFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVL 299
Query: 61 QDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNI 109
L PIR +R + +D + + G+ + +E A +TL +++ AM +
Sbjct: 300 NGVLAPIRTRRAEYERDPDAVLRFVTEGTARGREVAAQTLGQVRRAMRL 348
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase,
translation, structural GEN NPPSFA; 2.50A {Thermus
thermophilus}
Length = 337
Score = 114 bits (287), Expect = 3e-32
Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVM 60
+ DP + +SDPG + +FTYL F K + + G+G +K+ L + +
Sbjct: 220 LPDDPQRIRLSDPGDPERTILFTYLSYF-APKDLVEALKEEYRKAGVGTYVVKRILFDHL 278
Query: 61 QDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDYF 112
+ L PIR + + L KD Y+ D L G+++A+ A+ T++ ++ + +
Sbjct: 279 MEALRPIRERAEALKKDPDYVMDALLEGAKRARAVAQATMEEVREKVGLLLP 330
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann
fold, crystallography, X-RAY, P. horikoshii,
aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus
horikoshii}
Length = 392
Score = 99.0 bits (247), Expect = 3e-26
Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 8/117 (6%)
Query: 1 MYTDPNH----LHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQ-GGLGDVTIKKY 55
G+ + VF +L+ F + K + + G L K+Y
Sbjct: 279 FTLTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGECKRY 338
Query: 56 LIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDYF 112
LI +Q+FL + +RK+ K + + K+ E E + LKR + + +
Sbjct: 339 LISKIQEFLKEHQRRRKKAEKLVEKFKYTGKLAQEMWNEAIPEPLKR---SHHHHHH 392
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytic domain, AN recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP:
c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Length = 437
Score = 95.4 bits (237), Expect = 1e-24
Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 4/109 (3%)
Query: 1 MYTDPNHLHISDPGKVDGNP----VFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYL 56
I + + GN F YL F D K Q G + +KK L
Sbjct: 328 HAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKAL 387
Query: 57 IEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKN 105
IEV+Q + + +RK+++ + + S Q+ A +
Sbjct: 388 IEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDFQKLAAALEHHHHH 436
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, ligase, nucleotide-binding;
HET: TRP; 2.42A {Cryptosporidium parvum iowa II}
Length = 393
Score = 88.4 bits (219), Expect = 3e-22
Identities = 15/108 (13%), Positives = 35/108 (32%), Gaps = 10/108 (9%)
Query: 1 MYTDPNHLHISDPGKVDGNP----VFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYL 56
+ ++ N + YL D +K + G + IK L
Sbjct: 292 YAFSGGQATEEEQRRLGANLDVDVSWQYLRFLMEDDEKLEEIGKKYSSGEMLSGEIKSIL 351
Query: 57 IEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIK 104
++ + + R+ ++ D++ + K++E+ K K
Sbjct: 352 VQELVKLTKNHQKNREAIND------DVIAKFTNKSREQLLKLFINKK 393
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
PSI-2, protein structure initiative; HET: PG4; 1.80A
{Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A*
3kt8_A*
Length = 432
Score = 84.3 bits (208), Expect = 1e-20
Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 8/112 (7%)
Query: 1 MYTDPNHLHISDPGKVDGNP----VFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYL 56
+ ++ GNP + YL F D + G L +KK
Sbjct: 321 YAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGELLSGEMKKLC 380
Query: 57 IEVMQDFLFPIRIKRKQLSKDK----KYIQDILKIGSEKAQEEAEKTLKRIK 104
IE +Q+F+ + +R Q+ ++ ++ E+ KT + K
Sbjct: 381 IETLQEFVKAFQERRAQVDEETLDKFMVPHKLVWGEKERLVAPKPKTKQEKK 432
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, LIG nucleotide-binding,
protein biosynthesis; 2.80A {Trypanosoma brucei}
Length = 395
Score = 83.5 bits (206), Expect = 2e-20
Identities = 14/97 (14%), Positives = 32/97 (32%)
Query: 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVM 60
H V+ + +L F D ++ + + G + +KK LI +
Sbjct: 299 GGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKKEYMLGRIMTGEVKKLLINTI 358
Query: 61 QDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAE 97
+ KRK ++ + + +I + +
Sbjct: 359 TAITKTHQEKRKLVTDEDVQLFTSTRIMGPAKKAATQ 395
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha-beta
structure; HET: ADP TRP; 2.15A {Campylobacter jejuni
subsp} PDB: 3m5w_A*
Length = 322
Score = 77.2 bits (191), Expect = 2e-18
Identities = 24/107 (22%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Query: 3 TDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVMQD 62
TD + DP + +F F + + + +I +GG G K YL E++
Sbjct: 219 TDS--TALEDPKDHENCNIFKIAKLFLDESGQK-ELQIRYEKGGEGYGHFKIYLNELVNA 275
Query: 63 FLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNI 109
+ R K +L + ++++IL G+ KA++ A++ +++I + +
Sbjct: 276 YFKEAREKYNELLEKPSHLKEILDFGATKARKIAQEKMQKIYEKIGL 322
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, amino acylation; HET: TRP; 2.60A
{Encephalitozoon cuniculi}
Length = 406
Score = 73.1 bits (179), Expect = 1e-16
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 1 MYTDPNH----LHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYL 56
H G +D + F YL F D ++ +Y +G + +K+
Sbjct: 315 YAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIKGEITSKEMKEKC 374
Query: 57 IEVMQDFLFPIRIKRKQLSKDK-KYIQDILK 86
+ V+Q+F+ + RK+++ D + DI K
Sbjct: 375 VVVIQEFVSRYQESRKRVTDDDLRAFIDINK 405
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytical domain, recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP:
a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A*
2quk_A
Length = 477
Score = 72.3 bits (177), Expect = 2e-16
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 6/99 (6%)
Query: 1 MYTDPNHLHISDPGKVDGNP----VFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYL 56
I + + GN F YL F D K Q G + +KK L
Sbjct: 375 HAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKAL 434
Query: 57 IEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEE 95
IEV+Q + + +RK+++ + +++ + A E
Sbjct: 435 IEVLQPLIAEHQARRKEVTDE--IVKEFMTPRKLAAALE 471
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A
{Plasmodium falciparum}
Length = 373
Score = 71.4 bits (175), Expect = 4e-16
Identities = 16/101 (15%), Positives = 36/101 (35%), Gaps = 10/101 (9%)
Query: 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLY----------QGGLGDV 50
Y PN + + + +F ++F +K+ + + Y G + +
Sbjct: 273 AYCPPNVIENNPIYAYAKSIIFPSYNEFNLVRKEKNGGDKTYYTLQELEHDYVNGFIHPL 332
Query: 51 TIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEK 91
+K + + L P+R + + K + +I K K
Sbjct: 333 DLKDNVAMYINKLLQPVRDHFQNNIEAKNLLNEIKKYKVTK 373
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics,
medical structural GEN pathogenic protozoa, MSGPP,
ligase; 3.00A {Entamoeba histolytica}
Length = 386
Score = 65.1 bits (158), Expect = 7e-14
Identities = 17/74 (22%), Positives = 31/74 (41%)
Query: 4 DPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVMQDF 63
+ H G+ D + F L+ F +D + E +G L +KK + M+DF
Sbjct: 302 NTTEEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEKYSKGELLSGELKKIVSASMKDF 361
Query: 64 LFPIRIKRKQLSKD 77
+ K+K ++
Sbjct: 362 IVAYDAKKKPITTA 375
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, rossmann
fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Length = 341
Score = 63.7 bits (156), Expect = 2e-13
Identities = 18/65 (27%), Positives = 38/65 (58%)
Query: 43 YQGGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKR 102
Y G KK + E + L P++ + +++ D++Y+ +++ G+EKA +A +TLK+
Sbjct: 271 YAGVEMYGPFKKDVGEAVVAMLEPVQAEYQRIRNDREYLNSVMRDGAEKASAKALQTLKK 330
Query: 103 IKNAM 107
+ A+
Sbjct: 331 VYAAV 335
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid,
structural genomics, niaid, center for structural
genomics infectious diseases; 1.95A {Yersinia pestis}
Length = 346
Score = 61.4 bits (150), Expect = 1e-12
Identities = 12/55 (21%), Positives = 31/55 (56%)
Query: 53 KKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAM 107
K + + + L ++ + + +D+ +QD+++ G+ KA+ A+ TL ++ A+
Sbjct: 286 KGAVADAVSGMLSELQERYRTYREDEALLQDVMREGAAKARARAQVTLAKVYEAI 340
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi
aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia
lamblia atcc 50803}
Length = 451
Score = 59.8 bits (144), Expect = 6e-12
Identities = 13/77 (16%), Positives = 27/77 (35%)
Query: 1 MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVM 60
D H + + + YL+ F D + + + G L +K LI ++
Sbjct: 363 GGRDTEEEHRAFGADLSVDVSVRYLEVFMKDDAELEKLKADYKTGKLLTGEVKATLIGIL 422
Query: 61 QDFLFPIRIKRKQLSKD 77
Q + +R ++
Sbjct: 423 QGLIKEHAERRDKVDTT 439
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis,
translation, class I tRNA synth rossman fold, high
motif, KMSKS motif; 2.80A {Bacillus subtilis}
Length = 388
Score = 56.5 bits (137), Expect = 7e-11
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 53 KKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAM 107
K L EV+ + L PI+ + +L + + + IL G+E+A A K LK+++NAM
Sbjct: 303 KGDLAEVVVNALKPIQDRYYELIESE-ELDRILDEGAERANRTANKMLKKMENAM 356
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS,
induced FIT, ligase; HET: TYM; 1.72A {Geobacillus
stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A*
1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A*
1d2r_A 3u1v_A
Length = 328
Score = 55.6 bits (135), Expect = 1e-10
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 53 KKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAM 107
K L +V+ + L PI+ + + + + +L G+EKA A + +++++ AM
Sbjct: 269 KADLAQVVIETLRPIQERYHHWMESE-ELDRVLDEGAEKANRVASEMVRKMEQAM 322
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase,
structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma
pneumoniae}
Length = 348
Score = 54.5 bits (132), Expect = 3e-10
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 53 KKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAM 107
K L E + L I+ KR+Q+S++ + + L+ G +AQ A TL +
Sbjct: 288 KNALTEATVNLLVNIQRKREQISRE--QVFNCLQAGKNQAQATARTTLALFYDGF 340
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation,
structural genomics; HET: TYR; 2.20A {Pyrococcus
horikoshii}
Length = 375
Score = 52.5 bits (126), Expect = 2e-09
Identities = 13/95 (13%), Positives = 32/95 (33%), Gaps = 11/95 (11%)
Query: 1 MYTDPNHLHISDPGKVDGNPVF---------TYLDQFGTDKKKNCQYEI-SLYQ-GGLGD 49
+ + + +F +FG D E+ + G L
Sbjct: 277 AFCPAREVRYNPVLDWVEYIIFREEPTEFTVHRPAKFGGDVTYTTFEELKRDFAEGKLHP 336
Query: 50 VTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDI 84
+ +K + E + + L PIR ++ + + ++ +
Sbjct: 337 LDLKNAVAEYLINLLEPIRRYFEKHPEPLELMRSV 371
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, tyrrs, pseudod translation, ATP-binding,
nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania
major} PDB: 3p0i_A* 3p0h_A*
Length = 690
Score = 37.5 bits (87), Expect = 3e-04
Identities = 14/99 (14%), Positives = 31/99 (31%), Gaps = 20/99 (20%)
Query: 13 PGKVDGNPVFTYLD---------------QFGTDKKKNCQYEI-SLYQ-GGLGDVTIKKY 55
+ NPV + G + N + + G L +K
Sbjct: 593 APNEEANPVISVAQHLLAQHGALSIERGEANGGNVSYNTPEALVADCGSGALHPADLKAA 652
Query: 56 LIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQE 94
+++++ D R L+ + K +L+ +K +
Sbjct: 653 VLQLLLDRSAQA---RALLNGELKKNMTVLRNAEKKMAK 688
Score = 37.5 bits (87), Expect = 3e-04
Identities = 19/131 (14%), Positives = 35/131 (26%), Gaps = 19/131 (14%)
Query: 1 MYTDPN---HLHISDPGK----VDGNPVFTYLDQFGTDKKK------NCQYE-----ISL 42
Y I+D G D NPV Y + Y
Sbjct: 256 AYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYARPGAAATIDGTTYATYEDLEQA 315
Query: 43 YQ-GGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLK 101
+ + + +K LI+ + L P+R + + ++ + + A +T
Sbjct: 316 FVSDEVSEDALKSCLIDEVNALLEPVRQHFASNEEAHELLEAVKSYRKDGATLPLAETAL 375
Query: 102 RIKNAMNIDYF 112
A
Sbjct: 376 PAAPAKPHACM 386
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.004
Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 22/117 (18%)
Query: 6 NHL--HISDPGKVDGNPVFT--YLD-QFGTDKKKNCQYEISLYQGGLGDVT-IKKY---- 55
+H+ H+ + + +F +LD +F K ++ + L + +K Y
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534
Query: 56 ---------LIEVMQDFLFPIRIKRKQL-SKDKKYIQDILKIGSEKAQEEAEKTLKR 102
L+ + DFL +I+ + SK ++ L E EEA K ++R
Sbjct: 535 CDNDPKYERLVNAILDFLP--KIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 25.2 bits (54), Expect = 6.6
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 8/90 (8%)
Query: 31 DKKKNCQYEISLYQGGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSK-DKKYIQDILKIGS 89
K C+ + ++ L + + ++E++Q L+ I S I I +
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 90 EKAQEEAEKTLKR-------IKNAMNIDYF 112
E + K + ++NA + F
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex;
HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A
{Saccharomyces cerevisiae}
Length = 394
Score = 34.0 bits (78), Expect = 0.006
Identities = 14/113 (12%), Positives = 35/113 (30%), Gaps = 13/113 (11%)
Query: 3 TDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVMQD 62
T+ I P K G + ++ K+ L +K + + + +
Sbjct: 283 TNHFEFFIDRPEKFGGPITYKSFEEMKLAFKE----------EKLSPPDLKIGVADAINE 332
Query: 63 FLFPIRIKRKQLSKDKKYIQ---DILKIGSEKAQEEAEKTLKRIKNAMNIDYF 112
L PIR + + ++ + + K ++ + + A +
Sbjct: 333 LLEPIRQEFANNKEFQEASEKGYPVATPQKSKKAKKPKNKGTKYPGATKTNEI 385
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.17
Identities = 7/23 (30%), Positives = 9/23 (39%), Gaps = 1/23 (4%)
Query: 88 GSEKAQEEAEKTLKRIKNAMNID 110
G +A + L IK ID
Sbjct: 1857 GDLRALDTVTNVLNFIK-LQKID 1878
Score = 25.4 bits (55), Expect = 6.5
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 5 PNH-LHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQG 45
P+ L IS+ + V Y+++ + Q EISL G
Sbjct: 335 PSPMLSISNLTQEQ---VQDYVNKTNSHLPAGKQVEISLVNG 373
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; HET:
FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Length = 2060
Score = 28.5 bits (63), Expect = 0.56
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 14 GKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIK 53
G+ GNPV YL + G+ ++ +E + G + ++
Sbjct: 1515 GESHGNPVIDYLQRHGSSIEQPVNFENPIPLSGKTPLELR 1554
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati
translational regulation, protein/RNA, ligase-RNA
complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A
{Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1
d.104.1.1
Length = 642
Score = 27.5 bits (62), Expect = 0.93
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 11/61 (18%)
Query: 54 KYLIEVMQDFLF-PIRIKRKQLS-KDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDY 111
+ + ++ F F I +K LS + +K I GS++ + AE L NI +
Sbjct: 402 RLVYDMYSTFGFEKIVVK---LSTRPEKRI------GSDEMWDRAEADLAVALEENNIPF 452
Query: 112 F 112
Sbjct: 453 E 453
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A
{Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1
d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Length = 645
Score = 27.1 bits (61), Expect = 1.3
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 11/61 (18%)
Query: 56 LIEVMQDFLFP-IRIK---RKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDY 111
+I+V +DF F + R K+K + +AE LK + + + Y
Sbjct: 406 IIDVYKDFGFEDYSFRLSYRDPEDKEKY-------FDDDDMWNKAENMLKEAADELGLSY 458
Query: 112 F 112
Sbjct: 459 E 459
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein
biosynthesis, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Length = 471
Score = 26.5 bits (59), Expect = 1.8
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 54 KYLIEVMQDFLFPIRIKRKQLS-KDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDY 111
K ++E + + +LS DK I +GS++ E AE+ L+ + +N Y
Sbjct: 186 KLVLERLFKLGVSSETFKVRLSMSDKSLIGKE-FMGSKEEWEGAEEALREAASRINEKY 243
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding;
HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Length = 348
Score = 26.6 bits (59), Expect = 2.2
Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 10/81 (12%)
Query: 13 PGKVDGNPVFTY-----LDQFGTDKKKNCQY----EISLYQGGLGDVTIKKYLIEVMQDF 63
+ NP+F Y L FGT Y I + +K + +
Sbjct: 261 TDETFDNPIFEYIKYLLLRWFGTLNLCGKIYTDIESIQEDFSSMNKRELKTDVANYINTI 320
Query: 64 LFPIRIKRKQLSKDKKYIQDI 84
+ +R K+ + + + ++
Sbjct: 321 IDLVREHFKKP-ELSELLSNV 340
>3dwb_A ECE-1, endothelin-converting enzyme 1; protein, disease mutation,
glycoprotein, hirschsprung diseas hydrolase, membrane,
metal-binding; HET: 5HD RDF; 2.38A {Homo sapiens}
Length = 670
Score = 26.2 bits (58), Expect = 2.5
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 9/75 (12%)
Query: 29 GTDKKKNCQYEISLYQGGLGDVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIG 88
D K + I + Q GLG L +D+ K L+ Y+ + K+
Sbjct: 142 SADSKNSNSNVIQVDQSGLG-------LPS--RDYYLNKTENEKVLTGYLNYMVQLGKLL 192
Query: 89 SEKAQEEAEKTLKRI 103
+E +++I
Sbjct: 193 GGGDEEAIRPQMQQI 207
>3zuk_A Endopeptidase, peptidase family M13; hydrolase-inhibitor complex,
pathogenicity, phagosome matura; HET: RDF 211 PGE PG4;
2.60A {Mycobacterium tuberculosis}
Length = 699
Score = 25.8 bits (57), Expect = 4.3
Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 14/77 (18%)
Query: 29 GTDKKKNCQYEISLYQGGLG--DVTIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILK 86
TD K + +Y + Q G+G D + Y E L+ +I +
Sbjct: 174 DTDSKDSTRYLVHFTQSGIGLPDESY--YRDEQHA----------AVLAAYPGHIARMFG 221
Query: 87 IGSEKAQEEAEKTLKRI 103
+ + KT RI
Sbjct: 222 LVYGGESRDHAKTADRI 238
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose
3-epimeras tagatose 3-epimerase, isomerase; 2.20A
{Thermotoga maritima}
Length = 290
Score = 25.5 bits (56), Expect = 4.9
Identities = 10/49 (20%), Positives = 14/49 (28%), Gaps = 20/49 (40%)
Query: 7 HLHISDP-------GKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLG 48
H H++D G D VF L + G Y +
Sbjct: 226 HFHVADSNRWAPGCGHFDFRSVFNTLKEIG-------------YNRYVS 261
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION,
adenylate analog, deletion mutant, ligase; HET: TSB;
1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB:
1evk_A* 1fyf_A* 1kog_A*
Length = 401
Score = 24.9 bits (55), Expect = 8.1
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 11/60 (18%)
Query: 54 KYLIEVMQDFLF-PIRIKRKQLS-KDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNIDY 111
+ + ++ F F I +K LS + +K I GS++ + AE L NI +
Sbjct: 161 RLVYDMYSTFGFEKIVVK---LSTRPEKRI------GSDEMWDRAEADLAVALEENNIPF 211
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics,
PSI, protein structure initiative, NYSG oxidoreductase;
2.20A {Escherichia coli}
Length = 483
Score = 24.6 bits (54), Expect = 8.5
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 69 IKRKQLSKDKKYIQDILKIGSEK---AQEEAEKTLKRIKNAMNID 110
I + L++ I L + E E+TLKR+ +I
Sbjct: 36 ISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH 80
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, LYME
disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Length = 501
Score = 24.5 bits (54), Expect = 9.8
Identities = 2/20 (10%), Positives = 9/20 (45%)
Query: 89 SEKAQEEAEKTLKRIKNAMN 108
S + ++ + + N ++
Sbjct: 339 SLDNLQASKIARENLINKLS 358
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.139 0.399
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,764,688
Number of extensions: 95475
Number of successful extensions: 319
Number of sequences better than 10.0: 1
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 57
Length of query: 112
Length of database: 6,701,793
Length adjustment: 76
Effective length of query: 36
Effective length of database: 4,579,797
Effective search space: 164872692
Effective search space used: 164872692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)