RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2883
         (112 letters)



>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS)
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 326

 Score = 68.3 bits (166), Expect = 1e-15
 Identities = 19/109 (17%), Positives = 45/109 (41%), Gaps = 8/109 (7%)

Query: 1   MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYLIEVM 60
                 +   + PG  +   +++ L     ++ +           G G    K  L +V+
Sbjct: 224 SEGTIRYDKEAKPGISNLLNIYSTLSGQSIEELER-------QYEGKGYGVFKADLAQVV 276

Query: 61  QDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEEAEKTLKRIKNAMNI 109
            + L PI+ +     + +  +  +L  G+EKA   A + +++++ AM +
Sbjct: 277 IETLRPIQERYHHWMESE-ELDRVLDEGAEKANRVASEMVRKMEQAMGL 324


>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 386

 Score = 54.0 bits (129), Expect = 2e-10
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 6/92 (6%)

Query: 1   MYTDPNHLHISDPGKVDGNP----VFTYLDQFGTDKKKNCQYEISLYQGGLGDVTIKKYL 56
                    I +  +  GN      F YL  F  D  K  Q       G +    +KK L
Sbjct: 294 HAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKAL 353

Query: 57  IEVMQDFLFPIRIKRKQLSKDKKYIQDILKIG 88
           IEV+Q  +   + +RK+++ +   +++ +   
Sbjct: 354 IEVLQPLIAEHQARRKEVTDE--IVKEFMTPR 383


>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 339

 Score = 33.4 bits (75), Expect = 0.003
 Identities = 10/98 (10%), Positives = 28/98 (28%), Gaps = 15/98 (15%)

Query: 1   MYTDPNHLHISDPGKVDGNPVFTYLDQFGTDKKKNC----------QYEISLYQGGLGDV 50
            + +P ++  +       + +F    +F   + +              E       +   
Sbjct: 245 AFCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEKDFAAEVVHPG 304

Query: 51  TIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIG 88
            +K  +   +   L PIR K      +   ++ +    
Sbjct: 305 DLKNSVEVALNKLLDPIREKF-----NTPALKKLASAA 337


>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 306

 Score = 29.6 bits (65), Expect = 0.069
 Identities = 14/72 (19%), Positives = 21/72 (29%), Gaps = 15/72 (20%)

Query: 12  DPGKVDGNPVFTYLDQFGTDKKKNCQYEISLY---------------QGGLGDVTIKKYL 56
             G V+GNP+      F        + E                      L  + +K  +
Sbjct: 232 PAGVVEGNPIMEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESLFKNKELHPMDLKNAV 291

Query: 57  IEVMQDFLFPIR 68
            E +   L PIR
Sbjct: 292 AEELIKILEPIR 303


>d2v3ka1 c.116.1.6 (A:25-251) Essential for mitotic growth 1, EMG1
           {Saccharomyces cerevisiae [TaxId: 4932]}
          Length = 227

 Score = 27.5 bits (61), Expect = 0.35
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 8/76 (10%)

Query: 39  EISLYQGGLGDV---TIKKYLIEVMQDFLFPIRIKRKQLSKDKKYIQDILKIGSEKAQEE 95
           +  + + G   V   T +  LIEV      P     +   +    +  +L   S ++   
Sbjct: 77  DSPINKAGKLQVYIQTSRGILIEVNPTVRIP-----RTFKRFSGLMVQLLHKLSIRSVNS 131

Query: 96  AEKTLKRIKNAMNIDY 111
            EK LK IKN +    
Sbjct: 132 EEKLLKVIKNPITDHL 147


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.139    0.399 

Gapped
Lambda     K      H
   0.267   0.0640    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 442,164
Number of extensions: 19702
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 28
Length of query: 112
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 41
Effective length of database: 1,432,766
Effective search space: 58743406
Effective search space used: 58743406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)