Query psy2887
Match_columns 899
No_of_seqs 666 out of 5303
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 19:27:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2887.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2887hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0542 clpA ATP-binding subun 100.0 2.6E-94 5.7E-99 815.6 54.7 586 8-677 186-776 (786)
2 PRK10865 protein disaggregatio 100.0 3.7E-80 8E-85 741.0 62.7 653 9-675 195-848 (857)
3 TIGR03345 VI_ClpV1 type VI sec 100.0 5.9E-80 1.3E-84 736.0 62.7 637 9-673 204-848 (852)
4 TIGR03346 chaperone_ClpB ATP-d 100.0 1.6E-78 3.4E-83 731.8 67.1 655 9-675 190-845 (852)
5 CHL00095 clpC Clp protease ATP 100.0 7.9E-76 1.7E-80 707.0 62.1 610 9-697 196-818 (821)
6 PRK11034 clpA ATP-dependent Cl 100.0 9.2E-73 2E-77 659.8 48.3 531 9-675 203-735 (758)
7 TIGR02639 ClpA ATP-dependent C 100.0 4.6E-72 1E-76 667.3 50.0 529 9-673 199-729 (731)
8 KOG1051|consensus 100.0 1.1E-67 2.3E-72 606.3 36.8 631 9-673 204-850 (898)
9 TIGR00668 apaH bis(5'-nucleosy 100.0 2E-56 4.3E-61 455.3 23.8 263 630-898 3-268 (279)
10 cd07422 MPP_ApaH Escherichia c 100.0 4.2E-52 9E-57 426.5 22.8 253 631-889 2-257 (257)
11 PRK00166 apaH diadenosine tetr 100.0 1E-51 2.2E-56 428.7 24.2 263 630-898 3-268 (275)
12 KOG0733|consensus 100.0 7E-50 1.5E-54 427.0 29.7 426 11-598 221-692 (802)
13 KOG0730|consensus 100.0 4.6E-43 9.9E-48 381.8 31.1 399 11-641 216-646 (693)
14 KOG0736|consensus 100.0 5.2E-35 1.1E-39 321.2 30.6 380 13-592 431-850 (953)
15 TIGR01243 CDC48 AAA family ATP 100.0 3.6E-34 7.9E-39 343.7 36.0 421 11-639 210-664 (733)
16 KOG0735|consensus 100.0 3.4E-34 7.4E-39 311.6 28.8 387 11-598 429-848 (952)
17 PRK13625 bis(5'-nucleosyl)-tet 100.0 2.8E-32 6E-37 282.8 17.6 208 630-898 3-232 (245)
18 cd07413 MPP_PA3087 Pseudomonas 100.0 6.9E-32 1.5E-36 275.1 14.9 194 631-892 2-220 (222)
19 COG0466 Lon ATP-dependent Lon 100.0 1.7E-29 3.7E-34 278.5 32.1 408 158-643 126-553 (782)
20 cd07423 MPP_PrpE Bacillus subt 100.0 5.3E-30 1.1E-34 264.9 14.7 208 631-898 4-229 (234)
21 KOG0741|consensus 100.0 1.3E-28 2.7E-33 260.0 22.9 165 15-196 258-441 (744)
22 PRK11439 pphA serine/threonine 100.0 2E-29 4.3E-34 257.2 12.4 201 619-889 8-218 (218)
23 TIGR00382 clpX endopeptidase C 100.0 5.8E-28 1.3E-32 263.2 23.7 260 379-656 68-390 (413)
24 PRK10787 DNA-binding ATP-depen 100.0 1.6E-26 3.5E-31 273.8 31.2 376 203-648 161-553 (784)
25 TIGR00763 lon ATP-dependent pr 100.0 3.2E-26 6.9E-31 275.3 31.8 377 203-650 158-554 (775)
26 PRK05342 clpX ATP-dependent pr 99.9 8.5E-27 1.8E-31 256.3 22.6 260 379-655 62-383 (412)
27 cd07421 MPP_Rhilphs Rhilph pho 99.9 2.1E-27 4.6E-32 241.5 14.2 205 629-895 3-298 (304)
28 KOG2004|consensus 99.9 5.8E-25 1.3E-29 240.7 28.8 376 205-650 251-645 (906)
29 COG0464 SpoVK ATPases of the A 99.9 9.3E-25 2E-29 252.3 29.8 377 11-599 16-424 (494)
30 PHA02239 putative protein phos 99.9 2.6E-26 5.6E-31 234.2 14.2 174 630-880 3-222 (235)
31 PRK09968 serine/threonine-spec 99.9 4.3E-26 9.3E-31 231.8 12.1 198 624-889 11-218 (218)
32 cd07424 MPP_PrpA_PrpB PrpA and 99.9 4.6E-25 9.9E-30 224.0 11.0 192 630-889 3-207 (207)
33 COG1222 RPT1 ATP-dependent 26S 99.9 4.6E-24 1E-28 217.7 17.4 177 11-215 183-372 (406)
34 PF07724 AAA_2: AAA domain (Cd 99.9 3.7E-24 8E-29 207.9 12.2 152 416-579 1-171 (171)
35 COG1223 Predicted ATPase (AAA+ 99.9 7.3E-23 1.6E-27 198.7 17.2 162 12-196 150-320 (368)
36 cd00144 MPP_PPP_family phospho 99.9 7.5E-24 1.6E-28 219.6 9.8 209 631-888 1-225 (225)
37 KOG0738|consensus 99.9 1.5E-22 3.4E-27 207.4 18.6 178 9-214 241-431 (491)
38 KOG0730|consensus 99.9 5.9E-23 1.3E-27 225.1 14.8 178 11-216 466-653 (693)
39 KOG0733|consensus 99.9 9.6E-23 2.1E-27 219.6 15.5 177 11-214 543-732 (802)
40 PRK05201 hslU ATP-dependent pr 99.9 2.9E-22 6.2E-27 214.1 18.7 249 380-656 7-412 (443)
41 COG2204 AtoC Response regulato 99.9 1.9E-22 4E-27 219.8 17.3 265 347-647 103-371 (464)
42 COG3829 RocR Transcriptional r 99.9 2.7E-22 5.9E-27 216.9 16.0 243 388-666 245-491 (560)
43 TIGR00390 hslU ATP-dependent p 99.9 8.2E-22 1.8E-26 210.5 18.7 249 380-656 4-410 (441)
44 COG1219 ClpX ATP-dependent pro 99.9 4.4E-22 9.6E-27 199.1 15.1 277 379-672 52-393 (408)
45 CHL00195 ycf46 Ycf46; Provisio 99.9 3.5E-20 7.7E-25 207.9 30.9 187 389-639 229-436 (489)
46 COG3604 FhlA Transcriptional r 99.9 4.9E-22 1.1E-26 211.5 14.2 227 388-647 223-453 (550)
47 KOG0734|consensus 99.9 1.7E-21 3.7E-26 206.6 13.5 181 11-219 335-525 (752)
48 COG1222 RPT1 ATP-dependent 26S 99.9 2.7E-21 5.9E-26 197.6 14.3 164 388-600 151-337 (406)
49 KOG0736|consensus 99.9 4.7E-21 1E-25 211.9 16.0 177 11-214 703-894 (953)
50 KOG0739|consensus 99.9 3.5E-21 7.7E-26 190.3 13.1 166 9-196 162-336 (439)
51 CHL00181 cbbX CbbX; Provisiona 99.8 1.7E-20 3.7E-25 198.4 17.2 216 376-647 11-251 (287)
52 cd07425 MPP_Shelphs Shewanella 99.8 7.5E-21 1.6E-25 191.8 10.6 122 631-752 1-141 (208)
53 TIGR02974 phageshock_pspF psp 99.8 5E-20 1.1E-24 199.0 16.9 226 390-647 1-230 (329)
54 PF05496 RuvB_N: Holliday junc 99.8 1.5E-19 3.3E-24 176.9 18.1 180 388-626 24-211 (233)
55 CHL00195 ycf46 Ycf46; Provisio 99.8 1.1E-19 2.5E-24 203.8 19.1 180 11-216 257-445 (489)
56 COG2256 MGS1 ATPase related to 99.8 3.7E-20 8.1E-25 192.6 13.9 239 388-703 24-274 (436)
57 TIGR02880 cbbX_cfxQ probable R 99.8 2.1E-19 4.5E-24 190.5 19.0 216 376-647 10-250 (284)
58 COG2256 MGS1 ATPase related to 99.8 1.2E-19 2.6E-24 188.8 16.1 170 12-217 47-222 (436)
59 PLN00020 ribulose bisphosphate 99.8 1.4E-19 3E-24 188.7 16.0 157 10-190 145-327 (413)
60 COG1223 Predicted ATPase (AAA+ 99.8 5.2E-20 1.1E-24 179.0 11.7 166 386-600 119-299 (368)
61 KOG0737|consensus 99.8 5.7E-20 1.2E-24 189.4 11.9 174 11-213 125-309 (386)
62 KOG0735|consensus 99.8 1.2E-19 2.7E-24 198.8 14.6 174 11-212 699-882 (952)
63 PRK11608 pspF phage shock prot 99.8 5.7E-19 1.2E-23 191.3 18.2 228 388-647 6-237 (326)
64 KOG0745|consensus 99.8 1.2E-18 2.6E-23 181.3 19.2 223 419-658 227-516 (564)
65 TIGR01817 nifA Nif-specific re 99.8 3.9E-19 8.4E-24 207.0 17.4 226 388-647 196-425 (534)
66 PF00158 Sigma54_activat: Sigm 99.8 3.1E-19 6.8E-24 172.9 13.2 162 390-577 1-163 (168)
67 PRK15424 propionate catabolism 99.8 7.1E-19 1.5E-23 199.4 17.9 225 388-647 219-462 (538)
68 TIGR02329 propionate_PrpR prop 99.8 1E-18 2.2E-23 198.6 18.3 225 388-647 212-447 (526)
69 COG0464 SpoVK ATPases of the A 99.8 1.3E-18 2.8E-23 201.3 19.2 184 9-218 272-465 (494)
70 PRK05022 anaerobic nitric oxid 99.8 1.7E-18 3.7E-23 199.5 18.9 227 388-647 187-417 (509)
71 COG1220 HslU ATP-dependent pro 99.8 1.5E-18 3.3E-23 175.1 15.6 248 380-655 7-412 (444)
72 PRK10820 DNA-binding transcrip 99.8 1.9E-18 4.1E-23 198.9 18.3 227 388-647 204-434 (520)
73 KOG0740|consensus 99.8 1.2E-18 2.6E-23 187.0 14.5 176 10-213 183-369 (428)
74 TIGR02881 spore_V_K stage V sp 99.8 5.2E-18 1.1E-22 178.9 19.0 192 11-215 40-238 (261)
75 PRK03992 proteasome-activating 99.8 5.9E-18 1.3E-22 187.8 19.7 178 11-216 163-353 (389)
76 PTZ00454 26S protease regulato 99.8 7.7E-18 1.7E-22 185.4 19.5 178 11-216 177-367 (398)
77 COG1221 PspF Transcriptional r 99.8 3.6E-18 7.7E-23 183.2 15.6 228 386-650 76-309 (403)
78 TIGR02881 spore_V_K stage V sp 99.8 1.1E-17 2.3E-22 176.6 19.0 184 388-624 6-208 (261)
79 CHL00181 cbbX CbbX; Provisiona 99.8 1.7E-17 3.8E-22 175.5 19.7 192 11-215 57-254 (287)
80 KOG0731|consensus 99.8 3.6E-18 7.7E-23 194.1 14.9 179 11-216 342-534 (774)
81 TIGR01243 CDC48 AAA family ATP 99.8 6E-18 1.3E-22 203.8 17.8 177 11-215 485-672 (733)
82 TIGR03689 pup_AAA proteasome A 99.8 2.8E-17 6.1E-22 183.9 21.7 153 11-170 214-380 (512)
83 KOG0727|consensus 99.8 3.1E-18 6.8E-23 165.6 11.9 151 11-179 187-350 (408)
84 KOG0728|consensus 99.8 4.1E-18 8.9E-23 164.6 12.6 149 13-179 181-342 (404)
85 PRK15429 formate hydrogenlyase 99.8 4.4E-17 9.5E-22 195.1 24.3 227 388-647 376-606 (686)
86 KOG0989|consensus 99.8 8.9E-18 1.9E-22 168.5 14.7 189 388-647 36-235 (346)
87 TIGR01241 FtsH_fam ATP-depende 99.8 1.4E-17 3.1E-22 191.6 18.5 177 11-215 86-275 (495)
88 CHL00206 ycf2 Ycf2; Provisiona 99.8 7.9E-18 1.7E-22 204.0 16.8 180 11-218 1628-1860(2281)
89 COG3283 TyrR Transcriptional r 99.8 1.6E-17 3.6E-22 168.7 15.9 225 388-649 204-431 (511)
90 KOG0652|consensus 99.7 1.2E-17 2.7E-22 162.2 13.9 164 10-196 202-378 (424)
91 PRK11388 DNA-binding transcrip 99.7 1.3E-17 2.9E-22 198.7 17.5 224 388-647 325-551 (638)
92 PF05496 RuvB_N: Holliday junc 99.7 4.1E-18 8.8E-23 166.9 10.6 159 12-214 49-228 (233)
93 PTZ00361 26 proteosome regulat 99.7 2.3E-17 5.1E-22 182.4 17.3 177 11-215 215-404 (438)
94 KOG0734|consensus 99.7 1.3E-17 2.8E-22 177.5 13.0 164 385-600 301-486 (752)
95 KOG0726|consensus 99.7 2.2E-18 4.7E-23 170.2 6.3 151 11-179 217-380 (440)
96 PRK14956 DNA polymerase III su 99.7 4.9E-17 1.1E-21 178.9 17.2 200 388-647 18-227 (484)
97 PRK10923 glnG nitrogen regulat 99.7 5E-17 1.1E-21 187.7 17.4 226 389-647 139-368 (469)
98 KOG0729|consensus 99.7 2E-17 4.3E-22 161.3 11.7 176 11-214 209-397 (435)
99 CHL00176 ftsH cell division pr 99.7 8.7E-17 1.9E-21 186.4 18.9 177 11-215 214-403 (638)
100 TIGR02880 cbbX_cfxQ probable R 99.7 1.5E-16 3.3E-21 168.7 19.2 168 12-192 57-228 (284)
101 KOG0732|consensus 99.7 2.6E-17 5.5E-22 191.9 13.5 181 12-214 298-488 (1080)
102 TIGR02915 PEP_resp_reg putativ 99.7 2E-16 4.3E-21 181.5 19.8 226 389-647 140-369 (445)
103 KOG0738|consensus 99.7 3.4E-17 7.3E-22 168.6 11.8 166 388-598 212-395 (491)
104 KOG0739|consensus 99.7 7E-17 1.5E-21 160.2 13.0 194 388-639 133-342 (439)
105 KOG0727|consensus 99.7 7.3E-17 1.6E-21 156.2 12.3 161 388-597 155-338 (408)
106 COG0465 HflB ATP-dependent Zn 99.7 5.4E-17 1.2E-21 181.8 12.9 178 11-216 181-371 (596)
107 PRK07003 DNA polymerase III su 99.7 2.9E-16 6.4E-21 178.5 17.8 200 388-647 16-225 (830)
108 COG5271 MDN1 AAA ATPase contai 99.7 1.7E-15 3.6E-20 176.5 23.8 191 420-639 1545-1748(4600)
109 TIGR01242 26Sp45 26S proteasom 99.7 4.2E-16 9.1E-21 172.7 18.2 176 12-215 155-343 (364)
110 COG2255 RuvB Holliday junction 99.7 4.5E-16 9.8E-21 154.6 16.2 180 388-626 26-213 (332)
111 KOG0728|consensus 99.7 1.4E-16 3.1E-21 154.1 12.1 163 388-599 147-332 (404)
112 PRK11361 acetoacetate metaboli 99.7 5.3E-16 1.2E-20 178.8 18.0 226 389-647 144-373 (457)
113 PRK12323 DNA polymerase III su 99.7 2.6E-16 5.6E-21 176.8 14.5 183 388-624 16-213 (700)
114 PRK14949 DNA polymerase III su 99.7 3.7E-16 8.1E-21 181.2 16.1 184 388-624 16-208 (944)
115 TIGR01818 ntrC nitrogen regula 99.7 7.9E-16 1.7E-20 177.6 17.5 226 389-647 135-364 (463)
116 KOG0651|consensus 99.7 2.7E-16 6E-21 157.4 11.6 163 11-196 164-339 (388)
117 PLN00020 ribulose bisphosphate 99.7 1.8E-15 4E-20 158.1 17.8 139 420-599 150-312 (413)
118 PLN03025 replication factor C 99.7 1.1E-15 2.4E-20 166.1 17.0 182 388-644 13-202 (319)
119 PRK14960 DNA polymerase III su 99.7 9.9E-16 2.1E-20 172.7 16.9 199 388-647 15-224 (702)
120 COG2255 RuvB Holliday junction 99.7 7.3E-16 1.6E-20 153.2 13.6 164 11-218 50-234 (332)
121 PRK10733 hflB ATP-dependent me 99.7 1.7E-15 3.7E-20 178.2 19.3 177 12-216 184-373 (644)
122 TIGR02902 spore_lonB ATP-depen 99.7 1.7E-15 3.7E-20 174.2 18.8 206 388-639 65-304 (531)
123 KOG2028|consensus 99.7 7.9E-16 1.7E-20 156.8 14.0 176 12-220 161-349 (554)
124 PRK15115 response regulator Gl 99.7 1.2E-15 2.7E-20 174.9 17.2 227 389-647 135-364 (444)
125 TIGR03689 pup_AAA proteasome A 99.7 4.7E-16 1E-20 174.2 12.1 163 388-599 182-379 (512)
126 PF00004 AAA: ATPase family as 99.6 1.3E-15 2.8E-20 143.6 13.2 121 16-153 1-131 (132)
127 PRK14962 DNA polymerase III su 99.6 2.3E-15 5E-20 169.3 17.1 199 388-647 14-223 (472)
128 PRK03992 proteasome-activating 99.6 2.4E-15 5.2E-20 167.0 16.9 163 387-598 130-315 (389)
129 PRK07994 DNA polymerase III su 99.6 2.5E-15 5.5E-20 172.6 17.4 183 388-624 16-208 (647)
130 KOG0731|consensus 99.6 1.9E-15 4.1E-20 172.2 15.8 164 387-600 310-497 (774)
131 PRK14958 DNA polymerase III su 99.6 2.5E-15 5.5E-20 170.9 16.9 199 388-647 16-225 (509)
132 PRK14952 DNA polymerase III su 99.6 4.2E-15 9.2E-20 170.1 18.6 201 388-647 13-224 (584)
133 PTZ00454 26S protease regulato 99.6 2.7E-15 5.8E-20 165.3 16.3 160 388-599 145-330 (398)
134 KOG2170|consensus 99.6 4.1E-15 9E-20 149.0 15.9 239 379-639 73-334 (344)
135 PRK14964 DNA polymerase III su 99.6 2.7E-15 5.8E-20 167.6 15.8 201 388-647 13-222 (491)
136 PRK14956 DNA polymerase III su 99.6 3.7E-15 8E-20 164.2 15.9 171 13-214 40-229 (484)
137 PRK07764 DNA polymerase III su 99.6 4.1E-15 8.8E-20 176.7 17.5 199 388-647 15-226 (824)
138 PRK14961 DNA polymerase III su 99.6 4.6E-15 9.9E-20 163.7 16.3 201 388-647 16-225 (363)
139 KOG0989|consensus 99.6 3.4E-15 7.3E-20 150.2 13.3 175 11-213 55-236 (346)
140 KOG0742|consensus 99.6 1.3E-15 2.8E-20 157.3 10.6 150 5-172 376-532 (630)
141 PRK14957 DNA polymerase III su 99.6 4.5E-15 9.8E-20 168.2 16.0 200 388-647 16-225 (546)
142 PRK14951 DNA polymerase III su 99.6 4.9E-15 1.1E-19 170.1 16.5 200 388-647 16-230 (618)
143 PRK00080 ruvB Holliday junctio 99.6 4.4E-14 9.6E-19 154.4 23.4 179 388-625 25-211 (328)
144 PRK14959 DNA polymerase III su 99.6 8.5E-15 1.9E-19 166.6 17.2 199 388-647 16-225 (624)
145 COG3284 AcoR Transcriptional a 99.6 2.1E-15 4.6E-20 167.0 11.8 218 392-647 317-537 (606)
146 PRK13531 regulatory ATPase Rav 99.6 1.4E-14 3.1E-19 158.8 17.9 181 376-596 8-192 (498)
147 KOG0729|consensus 99.6 1.7E-15 3.6E-20 148.0 9.3 161 388-597 177-360 (435)
148 TIGR01241 FtsH_fam ATP-depende 99.6 7.1E-15 1.5E-19 169.3 16.1 160 388-599 55-239 (495)
149 PRK07133 DNA polymerase III su 99.6 8.1E-15 1.8E-19 169.1 16.3 183 388-624 18-207 (725)
150 PRK05563 DNA polymerase III su 99.6 1.6E-14 3.4E-19 166.9 18.7 200 388-647 16-225 (559)
151 TIGR00635 ruvB Holliday juncti 99.6 2.6E-14 5.6E-19 155.3 19.4 179 388-625 4-190 (305)
152 PRK08691 DNA polymerase III su 99.6 4.7E-15 1E-19 169.1 13.8 200 388-647 16-225 (709)
153 PRK08451 DNA polymerase III su 99.6 1.2E-14 2.7E-19 163.7 16.9 201 388-647 14-223 (535)
154 PRK06645 DNA polymerase III su 99.6 1.1E-14 2.4E-19 164.3 16.3 200 388-647 21-234 (507)
155 KOG2028|consensus 99.6 6.2E-15 1.3E-19 150.3 12.7 192 388-647 138-341 (554)
156 PRK13342 recombination factor 99.6 1.7E-14 3.7E-19 162.3 17.8 183 388-647 12-201 (413)
157 cd07420 MPP_RdgC Drosophila me 99.6 5.7E-15 1.2E-19 156.2 13.0 123 629-755 52-181 (321)
158 PRK14963 DNA polymerase III su 99.6 1.3E-14 2.8E-19 164.7 16.8 200 388-647 14-222 (504)
159 CHL00176 ftsH cell division pr 99.6 1.2E-14 2.6E-19 168.8 16.5 194 388-640 183-396 (638)
160 PRK14960 DNA polymerase III su 99.6 7.7E-14 1.7E-18 157.6 21.8 173 11-214 35-226 (702)
161 PRK12323 DNA polymerase III su 99.6 3.7E-14 8.1E-19 159.7 19.2 173 11-214 36-232 (700)
162 PRK07003 DNA polymerase III su 99.6 2.9E-14 6.2E-19 162.5 18.4 173 12-215 37-228 (830)
163 PRK14965 DNA polymerase III su 99.6 1.1E-14 2.4E-19 169.0 15.3 200 388-648 16-226 (576)
164 KOG0652|consensus 99.6 8.7E-15 1.9E-19 142.6 11.7 162 388-598 171-355 (424)
165 PRK07940 DNA polymerase III su 99.6 2.1E-14 4.6E-19 157.8 15.5 170 388-595 5-186 (394)
166 PRK13341 recombination factor 99.6 2.6E-14 5.7E-19 168.0 17.1 191 388-647 28-222 (725)
167 PRK10365 transcriptional regul 99.6 3E-14 6.4E-19 163.6 17.1 226 390-647 141-369 (441)
168 PTZ00361 26 proteosome regulat 99.6 1.1E-14 2.4E-19 161.3 12.7 163 388-599 183-368 (438)
169 TIGR01242 26Sp45 26S proteasom 99.6 7.7E-15 1.7E-19 162.6 11.2 164 386-598 120-306 (364)
170 COG1224 TIP49 DNA helicase TIP 99.6 4.2E-14 9.1E-19 144.5 15.4 103 491-627 292-394 (450)
171 PRK13342 recombination factor 99.6 4.4E-14 9.5E-19 159.0 17.3 165 12-214 35-203 (413)
172 PRK09111 DNA polymerase III su 99.6 2.9E-14 6.3E-19 164.3 16.1 201 388-647 24-238 (598)
173 KOG0726|consensus 99.6 5.9E-15 1.3E-19 146.1 8.8 161 388-597 185-368 (440)
174 COG2812 DnaX DNA polymerase II 99.6 9E-15 2E-19 162.4 11.3 196 388-639 16-220 (515)
175 PRK14969 DNA polymerase III su 99.6 2.1E-14 4.6E-19 164.6 14.8 200 388-647 16-225 (527)
176 TIGR02640 gas_vesic_GvpN gas v 99.6 1.2E-13 2.6E-18 145.4 19.2 150 420-597 23-197 (262)
177 PRK04195 replication factor C 99.6 4.4E-14 9.4E-19 162.1 17.3 187 388-645 14-205 (482)
178 KOG0744|consensus 99.6 1.2E-14 2.6E-19 146.4 10.9 149 15-171 179-343 (423)
179 PRK06305 DNA polymerase III su 99.6 3.7E-14 8.1E-19 159.6 16.1 199 388-647 17-227 (451)
180 PRK05896 DNA polymerase III su 99.6 3.1E-14 6.7E-19 161.1 14.8 200 388-647 16-225 (605)
181 PHA02544 44 clamp loader, smal 99.6 1.3E-13 2.8E-18 150.6 19.3 187 388-645 21-212 (316)
182 PF06068 TIP49: TIP49 C-termin 99.6 3.6E-14 7.7E-19 148.2 13.9 102 491-626 279-380 (398)
183 PRK14953 DNA polymerase III su 99.6 4.2E-14 9.2E-19 160.0 15.7 201 388-647 16-225 (486)
184 PRK00080 ruvB Holliday junctio 99.5 4.1E-13 8.9E-18 146.8 21.7 158 11-212 49-227 (328)
185 smart00156 PP2Ac Protein phosp 99.5 1.1E-13 2.5E-18 144.9 16.4 119 628-752 28-151 (271)
186 TIGR00635 ruvB Holliday juncti 99.5 1.3E-13 2.8E-18 149.9 17.5 160 11-214 28-208 (305)
187 PRK06647 DNA polymerase III su 99.5 1.3E-13 2.8E-18 158.5 18.1 199 388-647 16-225 (563)
188 PRK12402 replication factor C 99.5 1.4E-13 3E-18 152.1 17.9 181 388-624 15-214 (337)
189 CHL00206 ycf2 Ycf2; Provisiona 99.5 3.9E-14 8.5E-19 172.6 14.0 144 420-596 1632-1815(2281)
190 cd07418 MPP_PP7 PP7, metalloph 99.5 2.4E-14 5.1E-19 153.6 10.7 123 628-754 66-195 (377)
191 PRK14962 DNA polymerase III su 99.5 1.3E-13 2.8E-18 155.3 17.1 172 11-213 34-224 (472)
192 PRK13341 recombination factor 99.5 8.9E-14 1.9E-18 163.5 16.3 166 12-213 51-223 (725)
193 PRK07994 DNA polymerase III su 99.5 3.5E-13 7.7E-18 155.1 20.6 169 15-214 40-227 (647)
194 TIGR00763 lon ATP-dependent pr 99.5 4.9E-14 1.1E-18 170.2 14.2 165 13-198 347-541 (775)
195 PRK14954 DNA polymerase III su 99.5 1.1E-13 2.5E-18 159.6 16.5 199 388-647 16-233 (620)
196 KOG0737|consensus 99.5 7.7E-14 1.7E-18 144.4 12.8 163 388-599 92-275 (386)
197 PRK14955 DNA polymerase III su 99.5 9.1E-14 2E-18 155.2 14.3 199 388-647 16-233 (397)
198 PRK14964 DNA polymerase III su 99.5 2.1E-13 4.5E-18 152.5 16.4 175 11-216 33-226 (491)
199 cd07417 MPP_PP5_C PP5, C-termi 99.5 2.4E-14 5.2E-19 152.1 8.1 118 628-750 60-182 (316)
200 PHA02244 ATPase-like protein 99.5 1E-12 2.2E-17 139.3 20.3 170 388-589 96-265 (383)
201 cd07419 MPP_Bsu1_C Arabidopsis 99.5 7.3E-14 1.6E-18 149.2 11.7 151 585-752 21-185 (311)
202 PLN03025 replication factor C 99.5 2.1E-13 4.5E-18 148.4 15.4 163 12-210 33-203 (319)
203 COG0466 Lon ATP-dependent Lon 99.5 1.4E-13 3E-18 153.5 13.9 181 12-213 349-559 (782)
204 PRK06645 DNA polymerase III su 99.5 2.5E-13 5.3E-18 153.4 16.1 174 11-215 41-237 (507)
205 PRK14949 DNA polymerase III su 99.5 1.9E-13 4.2E-18 158.9 15.0 169 15-214 40-227 (944)
206 PRK14957 DNA polymerase III su 99.5 1.1E-12 2.4E-17 148.9 20.8 173 12-215 37-228 (546)
207 PRK14958 DNA polymerase III su 99.5 2.6E-13 5.6E-18 154.5 15.8 173 11-214 36-227 (509)
208 PF00004 AAA: ATPase family as 99.5 1.1E-13 2.3E-18 130.4 10.5 116 421-583 1-131 (132)
209 TIGR02903 spore_lon_C ATP-depe 99.5 2.9E-12 6.3E-17 149.8 24.6 198 388-629 154-386 (615)
210 PRK08727 hypothetical protein; 99.5 5.5E-13 1.2E-17 137.7 16.3 186 388-647 20-209 (233)
211 TIGR02397 dnaX_nterm DNA polym 99.5 4.1E-13 8.9E-18 149.5 16.3 198 388-647 14-223 (355)
212 COG0465 HflB ATP-dependent Zn 99.5 2.7E-13 5.9E-18 152.3 14.7 164 388-598 150-333 (596)
213 PRK08691 DNA polymerase III su 99.5 1.4E-12 2.9E-17 149.2 20.3 174 10-214 35-227 (709)
214 COG5271 MDN1 AAA ATPase contai 99.5 3.6E-11 7.7E-16 141.5 31.7 149 420-596 890-1045(4600)
215 PRK08084 DNA replication initi 99.5 6.8E-13 1.5E-17 137.2 16.3 165 13-210 45-212 (235)
216 PTZ00244 serine/threonine-prot 99.5 1.1E-13 2.5E-18 145.4 10.6 148 584-753 24-176 (294)
217 PRK14959 DNA polymerase III su 99.5 1.2E-12 2.7E-17 149.1 19.5 171 11-212 36-225 (624)
218 PRK14948 DNA polymerase III su 99.5 4.5E-13 9.8E-18 155.7 16.3 183 388-624 16-210 (620)
219 PF01078 Mg_chelatase: Magnesi 99.5 7.1E-14 1.5E-18 136.7 8.1 181 388-589 3-206 (206)
220 KOG0742|consensus 99.5 4.9E-11 1.1E-15 123.9 28.9 141 415-602 381-532 (630)
221 cd07416 MPP_PP2B PP2B, metallo 99.5 2.3E-13 4.9E-18 144.6 12.3 147 585-753 16-167 (305)
222 PRK14970 DNA polymerase III su 99.5 1E-12 2.3E-17 146.3 18.1 194 388-647 17-214 (367)
223 PRK14971 DNA polymerase III su 99.5 6.1E-13 1.3E-17 154.7 16.6 199 388-647 17-227 (614)
224 PTZ00239 serine/threonine prot 99.5 2.3E-13 5.1E-18 143.5 11.6 148 584-752 15-167 (303)
225 KOG0991|consensus 99.5 1.7E-13 3.7E-18 131.8 9.4 190 388-652 27-224 (333)
226 PRK14951 DNA polymerase III su 99.5 2.3E-12 5.1E-17 148.2 20.6 171 13-214 38-232 (618)
227 PRK14969 DNA polymerase III su 99.5 2.7E-12 5.9E-17 147.3 21.0 170 14-214 39-227 (527)
228 PRK00440 rfc replication facto 99.5 1.6E-12 3.5E-17 142.5 18.4 185 388-647 17-208 (319)
229 PRK08084 DNA replication initi 99.5 1.2E-12 2.5E-17 135.5 16.2 162 420-645 47-212 (235)
230 PRK14950 DNA polymerase III su 99.5 5.9E-13 1.3E-17 155.6 15.5 201 388-647 16-226 (585)
231 TIGR03420 DnaA_homol_Hda DnaA 99.5 7.1E-13 1.5E-17 137.4 14.5 183 392-645 21-207 (226)
232 PRK14952 DNA polymerase III su 99.5 4.1E-12 8.9E-17 145.7 21.7 172 13-215 34-227 (584)
233 PRK14961 DNA polymerase III su 99.5 9.9E-13 2.1E-17 145.3 15.8 171 13-214 38-227 (363)
234 PRK14963 DNA polymerase III su 99.4 7.6E-12 1.6E-16 142.2 22.7 168 16-214 39-224 (504)
235 COG0714 MoxR-like ATPases [Gen 99.4 8.4E-13 1.8E-17 144.3 14.1 176 379-594 15-198 (329)
236 PRK05563 DNA polymerase III su 99.4 5.5E-12 1.2E-16 145.9 21.2 172 12-214 37-227 (559)
237 COG2812 DnaX DNA polymerase II 99.4 1.7E-12 3.7E-17 144.5 16.3 177 9-216 34-229 (515)
238 KOG2004|consensus 99.4 6.3E-13 1.4E-17 147.2 12.5 177 15-212 440-646 (906)
239 PRK07764 DNA polymerase III su 99.4 4.5E-12 9.7E-17 151.0 20.7 171 13-214 36-228 (824)
240 CHL00081 chlI Mg-protoporyphyr 99.4 1.5E-12 3.2E-17 139.7 14.9 179 388-598 17-232 (350)
241 cd07414 MPP_PP1_PPKL PP1, PPKL 99.4 4.4E-13 9.5E-18 141.4 10.7 147 584-752 22-173 (293)
242 PF07728 AAA_5: AAA domain (dy 99.4 5E-13 1.1E-17 126.9 10.1 128 420-576 1-139 (139)
243 TIGR02640 gas_vesic_GvpN gas v 99.4 2E-12 4.4E-17 136.1 15.7 155 12-195 20-216 (262)
244 KOG0740|consensus 99.4 9.7E-13 2.1E-17 141.9 13.1 199 384-639 149-363 (428)
245 PRK07399 DNA polymerase III su 99.4 1.4E-12 3E-17 139.8 14.3 165 388-597 4-194 (314)
246 PRK04195 replication factor C 99.4 1.3E-12 2.8E-17 150.0 14.8 161 13-210 39-205 (482)
247 TIGR02639 ClpA ATP-dependent C 99.4 1.5E-12 3.2E-17 156.7 15.5 181 388-625 182-380 (731)
248 cd07415 MPP_PP2A_PP4_PP6 PP2A, 99.4 5.4E-13 1.2E-17 140.1 10.2 149 584-753 14-167 (285)
249 PRK14965 DNA polymerase III su 99.4 8.4E-12 1.8E-16 145.1 21.1 175 11-216 36-229 (576)
250 PRK08903 DnaA regulatory inact 99.4 3.7E-12 8.1E-17 131.9 16.3 154 420-639 44-199 (227)
251 TIGR01650 PD_CobS cobaltochela 99.4 3.3E-12 7.2E-17 134.5 15.9 157 420-597 66-232 (327)
252 PRK06893 DNA replication initi 99.4 1.5E-12 3.3E-17 134.2 13.2 163 420-646 41-207 (229)
253 PRK13407 bchI magnesium chelat 99.4 4E-12 8.7E-17 136.3 16.7 179 388-598 8-216 (334)
254 PRK05896 DNA polymerase III su 99.4 2.8E-12 6E-17 145.5 16.0 173 12-215 37-228 (605)
255 PRK05201 hslU ATP-dependent pr 99.4 2E-12 4.4E-17 139.1 14.1 107 86-193 250-382 (443)
256 PRK00149 dnaA chromosomal repl 99.4 4.9E-12 1.1E-16 144.2 18.1 166 13-196 148-317 (450)
257 PRK06893 DNA replication initi 99.4 3.5E-12 7.7E-17 131.5 15.3 154 15-196 41-198 (229)
258 PRK09112 DNA polymerase III su 99.4 2.2E-12 4.7E-17 140.2 14.3 182 388-624 23-228 (351)
259 PTZ00480 serine/threonine-prot 99.4 1.1E-12 2.3E-17 138.8 11.4 148 584-753 31-183 (320)
260 PRK05642 DNA replication initi 99.4 4.7E-12 1E-16 130.8 15.8 156 13-196 45-203 (234)
261 KOG0744|consensus 99.4 9E-13 1.9E-17 133.1 9.9 143 420-602 179-344 (423)
262 PTZ00112 origin recognition co 99.4 5.7E-12 1.2E-16 144.1 17.4 217 386-648 753-987 (1164)
263 PRK12422 chromosomal replicati 99.4 1.1E-11 2.3E-16 139.2 19.6 165 13-196 141-308 (445)
264 PRK14086 dnaA chromosomal repl 99.4 1.2E-11 2.5E-16 140.4 19.9 165 13-195 314-482 (617)
265 PRK07133 DNA polymerase III su 99.4 1.5E-11 3.3E-16 142.3 21.1 172 12-214 39-226 (725)
266 PRK08451 DNA polymerase III su 99.4 7.9E-12 1.7E-16 141.2 18.0 174 11-215 34-226 (535)
267 TIGR02030 BchI-ChlI magnesium 99.4 3.3E-12 7.2E-17 137.3 14.3 178 388-597 4-218 (337)
268 PRK05642 DNA replication initi 99.4 6.9E-12 1.5E-16 129.6 15.9 147 419-624 46-196 (234)
269 KOG0651|consensus 99.4 9.3E-13 2E-17 132.4 9.1 157 388-593 132-311 (388)
270 PHA02544 44 clamp loader, smal 99.4 6.6E-12 1.4E-16 137.2 16.3 153 14-193 43-201 (316)
271 KOG0732|consensus 99.4 3.3E-12 7.2E-17 149.8 14.5 179 388-624 265-468 (1080)
272 PF05673 DUF815: Protein of un 99.4 1E-11 2.3E-16 123.9 15.8 176 388-600 27-209 (249)
273 KOG0743|consensus 99.4 1.6E-12 3.5E-17 138.7 10.4 133 11-169 233-384 (457)
274 PRK07471 DNA polymerase III su 99.4 2.7E-12 5.9E-17 140.2 12.5 166 388-597 19-212 (365)
275 PRK10733 hflB ATP-dependent me 99.4 3.8E-12 8.2E-17 150.1 14.6 160 389-600 153-337 (644)
276 PRK06620 hypothetical protein; 99.4 4.6E-12 1E-16 128.4 13.1 137 14-196 45-184 (214)
277 TIGR00390 hslU ATP-dependent p 99.4 6.3E-12 1.4E-16 135.2 14.6 108 85-193 247-380 (441)
278 PRK10787 DNA-binding ATP-depen 99.4 3.7E-12 8E-17 152.1 14.1 163 12-196 348-540 (784)
279 TIGR00362 DnaA chromosomal rep 99.4 1.9E-11 4.1E-16 137.8 19.1 165 13-195 136-304 (405)
280 PF13177 DNA_pol3_delta2: DNA 99.4 2.9E-12 6.2E-17 124.2 10.7 151 392-586 1-162 (162)
281 PRK14088 dnaA chromosomal repl 99.4 2.2E-11 4.8E-16 137.2 19.3 167 13-196 130-300 (440)
282 PRK09111 DNA polymerase III su 99.4 8.6E-12 1.9E-16 144.1 16.2 173 11-214 44-240 (598)
283 PF14532 Sigma54_activ_2: Sigm 99.4 1.5E-12 3.3E-17 123.1 8.3 137 391-585 1-138 (138)
284 PF00308 Bac_DnaA: Bacterial d 99.4 5.8E-12 1.3E-16 128.4 12.9 168 419-639 35-208 (219)
285 PRK08727 hypothetical protein; 99.4 1.8E-11 4E-16 126.4 16.5 164 14-211 42-208 (233)
286 PRK05342 clpX ATP-dependent pr 99.4 9.4E-12 2E-16 137.6 15.1 170 11-191 106-357 (412)
287 TIGR03345 VI_ClpV1 type VI sec 99.3 8.2E-12 1.8E-16 151.0 15.9 181 388-625 187-385 (852)
288 PF07726 AAA_3: ATPase family 99.3 1.7E-12 3.8E-17 115.9 7.4 108 420-540 1-112 (131)
289 TIGR00678 holB DNA polymerase 99.3 1.9E-11 4E-16 122.6 15.9 155 419-624 15-179 (188)
290 PRK06647 DNA polymerase III su 99.3 5.7E-11 1.2E-15 136.8 21.9 173 11-214 36-227 (563)
291 PRK14953 DNA polymerase III su 99.3 3.9E-11 8.5E-16 136.0 20.2 169 15-214 40-227 (486)
292 PRK05564 DNA polymerase III su 99.3 1.5E-11 3.3E-16 133.5 16.2 157 388-597 4-164 (313)
293 PRK14955 DNA polymerase III su 99.3 5.5E-11 1.2E-15 133.0 20.8 174 11-215 36-236 (397)
294 TIGR02442 Cob-chelat-sub cobal 99.3 2.8E-11 6E-16 142.8 19.3 200 388-626 4-262 (633)
295 KOG0371|consensus 99.3 7.7E-13 1.7E-17 128.4 5.0 228 629-879 61-300 (319)
296 KOG0743|consensus 99.3 6.2E-12 1.4E-16 134.3 12.2 170 420-649 237-433 (457)
297 PRK14954 DNA polymerase III su 99.3 8.2E-11 1.8E-15 136.1 22.1 174 11-215 36-236 (620)
298 PRK12422 chromosomal replicati 99.3 1.5E-11 3.3E-16 138.0 15.6 173 419-647 142-318 (445)
299 PRK08058 DNA polymerase III su 99.3 8.1E-12 1.8E-16 135.8 12.9 163 388-594 5-178 (329)
300 PRK07940 DNA polymerase III su 99.3 1.5E-11 3.3E-16 135.3 14.9 156 12-196 35-208 (394)
301 PRK14948 DNA polymerase III su 99.3 9.4E-11 2E-15 136.5 21.8 171 11-212 36-227 (620)
302 COG4650 RtcR Sigma54-dependent 99.3 8.4E-12 1.8E-16 124.0 10.9 247 386-677 182-437 (531)
303 KOG1942|consensus 99.3 2E-11 4.3E-16 121.4 13.5 104 491-627 297-400 (456)
304 TIGR00368 Mg chelatase-related 99.3 4.3E-11 9.4E-16 135.5 17.9 185 388-590 192-396 (499)
305 PRK11331 5-methylcytosine-spec 99.3 6.3E-11 1.4E-15 129.4 18.4 172 388-592 175-366 (459)
306 TIGR02928 orc1/cdc6 family rep 99.3 5E-11 1.1E-15 133.2 18.1 217 388-648 15-252 (365)
307 TIGR03420 DnaA_homol_Hda DnaA 99.3 4.8E-11 1E-15 123.7 16.7 168 11-213 36-207 (226)
308 TIGR02902 spore_lonB ATP-depen 99.3 1.9E-11 4.2E-16 140.9 15.0 176 12-215 85-312 (531)
309 PTZ00112 origin recognition co 99.3 5.9E-11 1.3E-15 136.0 18.4 189 12-214 779-988 (1164)
310 PRK14087 dnaA chromosomal repl 99.3 1.2E-11 2.7E-16 139.3 13.0 176 419-647 142-324 (450)
311 PRK06305 DNA polymerase III su 99.3 1.1E-10 2.3E-15 131.8 20.4 173 11-214 37-229 (451)
312 PRK14970 DNA polymerase III su 99.3 4.9E-11 1.1E-15 132.9 17.4 174 10-214 36-216 (367)
313 PRK14087 dnaA chromosomal repl 99.3 8.9E-11 1.9E-15 132.4 19.3 168 13-196 141-314 (450)
314 TIGR00382 clpX endopeptidase C 99.3 2.9E-11 6.4E-16 132.7 14.8 169 12-191 115-363 (413)
315 PRK12402 replication factor C 99.3 5.4E-11 1.2E-15 131.5 17.2 171 14-212 37-231 (337)
316 TIGR00362 DnaA chromosomal rep 99.3 1.9E-11 4.1E-16 137.8 13.5 168 419-639 137-310 (405)
317 TIGR01650 PD_CobS cobaltochela 99.3 1.2E-11 2.6E-16 130.3 10.9 155 13-191 64-252 (327)
318 PF00308 Bac_DnaA: Bacterial d 99.3 2.2E-11 4.8E-16 124.2 12.6 166 13-196 34-203 (219)
319 PRK00149 dnaA chromosomal repl 99.3 1.7E-11 3.6E-16 139.9 12.9 168 419-639 149-322 (450)
320 TIGR00678 holB DNA polymerase 99.3 4.1E-11 9E-16 120.1 14.2 154 11-195 12-185 (188)
321 TIGR02397 dnaX_nterm DNA polym 99.3 5.4E-11 1.2E-15 132.5 16.6 173 11-214 34-225 (355)
322 KOG0991|consensus 99.3 2.2E-11 4.7E-16 117.5 11.2 170 11-215 46-222 (333)
323 PRK06871 DNA polymerase III su 99.3 2.6E-11 5.7E-16 129.4 12.7 162 391-596 5-177 (325)
324 PRK00411 cdc6 cell division co 99.3 1.5E-10 3.2E-15 130.8 19.6 214 388-647 30-259 (394)
325 TIGR02928 orc1/cdc6 family rep 99.3 1.4E-10 3E-15 129.6 19.0 193 11-216 38-255 (365)
326 PRK11034 clpA ATP-dependent Cl 99.3 2.9E-11 6.2E-16 143.3 14.0 187 388-624 186-383 (758)
327 smart00763 AAA_PrkA PrkA AAA d 99.3 8.6E-11 1.9E-15 125.1 15.8 209 388-624 51-347 (361)
328 TIGR00764 lon_rel lon-related 99.3 7.8E-11 1.7E-15 137.3 16.9 140 484-650 211-367 (608)
329 PRK00411 cdc6 cell division co 99.3 3.1E-10 6.7E-15 128.2 21.2 190 11-216 53-263 (394)
330 PRK14086 dnaA chromosomal repl 99.3 5E-11 1.1E-15 135.4 14.5 167 420-639 316-488 (617)
331 PRK09087 hypothetical protein; 99.3 1.2E-10 2.7E-15 119.1 16.1 141 15-196 46-190 (226)
332 PRK04132 replication factor C 99.3 5.4E-11 1.2E-15 140.6 15.0 162 420-647 566-736 (846)
333 COG0606 Predicted ATPase with 99.2 1.2E-11 2.5E-16 133.3 8.3 179 388-590 179-384 (490)
334 PRK00440 rfc replication facto 99.2 9.4E-11 2E-15 128.5 15.7 165 13-213 38-209 (319)
335 PRK14088 dnaA chromosomal repl 99.2 3.5E-11 7.5E-16 135.7 12.4 168 420-639 132-305 (440)
336 COG0470 HolB ATPase involved i 99.2 5.3E-11 1.2E-15 130.9 13.7 144 389-587 2-170 (325)
337 PRK08769 DNA polymerase III su 99.2 5.2E-11 1.1E-15 126.9 12.8 162 389-595 5-182 (319)
338 COG1219 ClpX ATP-dependent pro 99.2 9.5E-11 2.1E-15 118.5 13.7 170 11-191 95-346 (408)
339 PRK04132 replication factor C 99.2 5.7E-11 1.2E-15 140.4 14.0 163 15-213 566-737 (846)
340 PRK05707 DNA polymerase III su 99.2 3.3E-11 7.2E-16 129.9 11.1 142 419-596 23-176 (328)
341 KOG2035|consensus 99.2 1.7E-10 3.7E-15 114.5 14.7 170 419-639 35-225 (351)
342 PRK13765 ATP-dependent proteas 99.2 1E-10 2.3E-15 135.4 15.5 142 485-651 221-377 (637)
343 PRK14971 DNA polymerase III su 99.2 1.4E-10 3.1E-15 135.2 16.6 173 12-215 38-230 (614)
344 PRK08903 DnaA regulatory inact 99.2 2.6E-10 5.6E-15 118.1 17.0 161 11-211 40-203 (227)
345 TIGR02031 BchD-ChlD magnesium 99.2 1.1E-10 2.3E-15 136.1 15.4 193 418-639 16-227 (589)
346 PF05673 DUF815: Protein of un 99.2 4.6E-10 1E-14 112.2 17.6 145 11-184 50-219 (249)
347 PRK06090 DNA polymerase III su 99.2 1.1E-10 2.4E-15 124.3 13.8 160 390-595 5-177 (319)
348 KOG2680|consensus 99.2 8.6E-11 1.9E-15 117.4 11.8 103 491-627 289-391 (454)
349 CHL00095 clpC Clp protease ATP 99.2 7.7E-11 1.7E-15 143.5 14.2 179 388-625 179-376 (821)
350 KOG0745|consensus 99.2 1.6E-10 3.5E-15 121.3 14.1 170 11-191 224-487 (564)
351 PRK06620 hypothetical protein; 99.2 1.3E-10 2.9E-15 117.8 13.3 144 420-645 46-192 (214)
352 PRK07993 DNA polymerase III su 99.2 1E-10 2.3E-15 126.3 13.2 161 391-595 5-177 (334)
353 PRK06964 DNA polymerase III su 99.2 9.6E-11 2.1E-15 126.0 12.8 141 419-595 22-201 (342)
354 PRK10865 protein disaggregatio 99.2 7E-11 1.5E-15 143.5 13.0 176 388-622 178-373 (857)
355 cd00009 AAA The AAA+ (ATPases 99.2 1.4E-10 3.1E-15 111.1 12.6 150 392-584 2-151 (151)
356 smart00350 MCM minichromosome 99.2 4.2E-10 9.1E-15 129.7 18.3 199 379-599 194-401 (509)
357 PTZ00111 DNA replication licen 99.2 2.5E-10 5.3E-15 134.1 16.3 199 378-598 440-657 (915)
358 PRK14950 DNA polymerase III su 99.2 5.5E-10 1.2E-14 130.8 18.5 170 13-213 38-227 (585)
359 COG1474 CDC6 Cdc6-related prot 99.2 3E-10 6.6E-15 123.9 15.3 220 388-652 17-247 (366)
360 PRK09087 hypothetical protein; 99.2 1.3E-10 2.9E-15 118.8 11.7 152 420-646 46-199 (226)
361 KOG1969|consensus 99.2 2.8E-10 6.1E-15 127.0 14.9 177 1-216 313-519 (877)
362 KOG0990|consensus 99.2 4.4E-11 9.6E-16 121.5 7.4 191 388-652 41-242 (360)
363 TIGR03346 chaperone_ClpB ATP-d 99.2 1.5E-10 3.2E-15 141.4 13.6 178 388-624 173-370 (852)
364 COG0593 DnaA ATPase involved i 99.2 1.4E-09 3E-14 118.0 19.1 163 12-196 112-281 (408)
365 KOG2035|consensus 99.2 1.1E-09 2.4E-14 108.8 16.7 178 13-213 34-234 (351)
366 KOG1969|consensus 99.1 5.3E-10 1.2E-14 124.8 15.0 169 420-647 328-515 (877)
367 PRK05707 DNA polymerase III su 99.1 6.1E-10 1.3E-14 120.1 15.0 157 11-194 20-196 (328)
368 TIGR02903 spore_lon_C ATP-depe 99.1 8.6E-10 1.9E-14 129.2 16.9 180 12-214 174-401 (615)
369 COG2607 Predicted ATPase (AAA+ 99.1 1.4E-09 3E-14 106.2 15.3 176 388-600 60-241 (287)
370 PRK09862 putative ATP-dependen 99.1 5E-10 1.1E-14 126.1 13.4 185 388-590 191-393 (506)
371 COG0542 clpA ATP-binding subun 99.1 4.5E-10 9.7E-15 129.9 13.2 167 8-192 516-734 (786)
372 PRK09112 DNA polymerase III su 99.1 8.8E-10 1.9E-14 119.9 14.5 176 11-211 43-244 (351)
373 KOG0741|consensus 99.1 6.1E-11 1.3E-15 127.1 5.3 137 420-603 258-419 (744)
374 PRK12377 putative replication 99.1 3E-10 6.5E-15 116.9 10.2 108 420-547 103-212 (248)
375 COG0488 Uup ATPase components 99.1 2.1E-10 4.6E-15 130.2 10.0 67 127-193 152-226 (530)
376 PF05621 TniB: Bacterial TniB 99.1 1.4E-09 3E-14 112.5 14.6 199 10-218 58-272 (302)
377 COG1474 CDC6 Cdc6-related prot 99.1 1.9E-09 4E-14 117.7 15.6 191 11-218 40-248 (366)
378 PRK08116 hypothetical protein; 99.1 1.4E-09 3.1E-14 114.3 14.1 143 420-601 116-263 (268)
379 KOG0372|consensus 99.1 3E-10 6.4E-15 109.9 7.9 117 628-753 43-168 (303)
380 PF07724 AAA_2: AAA domain (Cd 99.1 2.2E-10 4.7E-15 111.6 6.5 111 11-132 1-131 (171)
381 PRK13531 regulatory ATPase Rav 99.0 1.2E-08 2.6E-13 112.7 20.3 198 11-227 37-278 (498)
382 PF07728 AAA_5: AAA domain (dy 99.0 7.4E-11 1.6E-15 112.0 2.6 111 15-147 1-139 (139)
383 COG0714 MoxR-like ATPases [Gen 99.0 6.3E-10 1.4E-14 121.7 10.1 137 12-166 42-201 (329)
384 PF06068 TIP49: TIP49 C-termin 99.0 4.8E-09 1E-13 110.3 16.0 96 86-193 279-382 (398)
385 COG2607 Predicted ATPase (AAA+ 99.0 6.7E-09 1.5E-13 101.5 15.3 147 11-186 83-253 (287)
386 PRK13407 bchI magnesium chelat 99.0 3.1E-09 6.7E-14 114.2 14.1 118 86-217 129-288 (334)
387 PRK07471 DNA polymerase III su 99.0 3.9E-09 8.5E-14 115.5 15.1 172 11-209 39-240 (365)
388 PHA02244 ATPase-like protein 99.0 1.4E-09 3.1E-14 115.7 11.1 125 12-159 118-265 (383)
389 KOG0374|consensus 99.0 1.9E-10 4.2E-15 122.1 4.5 121 629-753 60-185 (331)
390 KOG0990|consensus 99.0 1.9E-08 4.1E-13 102.7 18.5 172 13-216 62-241 (360)
391 COG1224 TIP49 DNA helicase TIP 99.0 9.7E-09 2.1E-13 105.8 16.5 96 86-193 292-395 (450)
392 PRK05917 DNA polymerase III su 99.0 2.8E-09 6.1E-14 111.2 12.8 143 396-585 5-154 (290)
393 COG0470 HolB ATPase involved i 99.0 3.6E-09 7.8E-14 116.3 13.7 137 12-165 22-178 (325)
394 COG0593 DnaA ATPase involved i 99.0 2E-09 4.4E-14 116.7 11.1 179 417-652 112-296 (408)
395 COG1239 ChlI Mg-chelatase subu 99.0 5.1E-09 1.1E-13 111.8 13.8 179 385-598 14-232 (423)
396 PRK07276 DNA polymerase III su 99.0 4.4E-09 9.6E-14 110.2 13.0 156 392-594 6-171 (290)
397 PF06309 Torsin: Torsin; Inte 99.0 1.5E-09 3.2E-14 97.1 8.0 68 378-447 15-82 (127)
398 TIGR00602 rad24 checkpoint pro 99.0 6.2E-09 1.4E-13 120.4 15.3 220 388-647 84-328 (637)
399 PRK08699 DNA polymerase III su 99.0 2.7E-09 5.9E-14 114.9 11.6 141 419-595 22-182 (325)
400 PRK11331 5-methylcytosine-spec 99.0 2.7E-09 5.9E-14 116.8 11.1 139 12-154 193-357 (459)
401 PRK08769 DNA polymerase III su 99.0 1.4E-08 3E-13 108.5 16.3 160 11-193 24-200 (319)
402 PF01695 IstB_IS21: IstB-like 99.0 6.5E-10 1.4E-14 109.3 5.5 109 420-550 49-159 (178)
403 PRK07993 DNA polymerase III su 98.9 1.4E-08 3E-13 109.9 15.9 166 11-209 22-206 (334)
404 PRK07399 DNA polymerase III su 98.9 2.5E-08 5.4E-13 107.1 17.7 175 9-209 22-223 (314)
405 KOG0375|consensus 98.9 2E-09 4.3E-14 109.4 8.5 119 629-753 89-212 (517)
406 COG1220 HslU ATP-dependent pro 98.9 8.2E-09 1.8E-13 105.5 12.9 107 86-193 251-383 (444)
407 TIGR03015 pepcterm_ATPase puta 98.9 5.3E-08 1.1E-12 103.9 20.1 183 13-214 43-245 (269)
408 PRK05564 DNA polymerase III su 98.9 6.4E-08 1.4E-12 105.2 20.7 154 11-193 24-182 (313)
409 PRK05818 DNA polymerase III su 98.9 4.3E-09 9.3E-14 107.1 10.4 135 419-589 8-151 (261)
410 PRK08181 transposase; Validate 98.9 2.9E-09 6.3E-14 111.1 9.4 108 420-549 108-217 (269)
411 PRK06871 DNA polymerase III su 98.9 2.4E-08 5.1E-13 106.9 16.5 138 11-167 22-178 (325)
412 TIGR02030 BchI-ChlI magnesium 98.9 2.6E-08 5.6E-13 107.4 16.9 129 86-228 132-304 (337)
413 PRK06964 DNA polymerase III su 98.9 1.3E-08 2.8E-13 109.7 14.0 143 11-166 19-202 (342)
414 PF07726 AAA_3: ATPase family 98.9 1.3E-10 2.8E-15 103.9 -1.3 112 15-148 1-130 (131)
415 TIGR02974 phageshock_pspF psp 98.9 1.2E-08 2.6E-13 110.7 13.6 160 11-190 20-213 (329)
416 TIGR00602 rad24 checkpoint pro 98.9 9.9E-09 2.2E-13 118.7 13.4 187 16-213 113-329 (637)
417 smart00350 MCM minichromosome 98.9 1.7E-08 3.6E-13 116.5 14.8 177 11-212 234-450 (509)
418 PRK08058 DNA polymerase III su 98.9 1.4E-08 2.9E-13 110.6 13.1 135 11-165 26-179 (329)
419 PRK06526 transposase; Provisio 98.9 1.3E-09 2.8E-14 113.3 4.7 108 420-550 100-210 (254)
420 CHL00081 chlI Mg-protoporyphyr 98.9 5.1E-08 1.1E-12 104.9 16.8 131 86-230 145-319 (350)
421 cd00009 AAA The AAA+ (ATPases 98.9 1E-08 2.3E-13 98.1 10.0 128 12-153 18-150 (151)
422 PRK06835 DNA replication prote 98.9 5.9E-09 1.3E-13 112.1 9.0 109 420-547 185-295 (329)
423 PRK07952 DNA replication prote 98.8 1.8E-08 3.8E-13 103.6 11.4 109 420-547 101-211 (244)
424 PRK06090 DNA polymerase III su 98.8 3.6E-08 7.8E-13 105.2 14.0 139 10-166 22-178 (319)
425 PF13177 DNA_pol3_delta2: DNA 98.8 2.8E-08 6.1E-13 96.3 11.5 128 11-156 17-162 (162)
426 COG1484 DnaC DNA replication p 98.8 2.4E-08 5.3E-13 103.9 11.3 111 420-551 107-219 (254)
427 TIGR03015 pepcterm_ATPase puta 98.8 2.3E-07 4.9E-12 99.0 19.1 174 420-626 45-228 (269)
428 PF12775 AAA_7: P-loop contain 98.8 5.3E-09 1.2E-13 110.0 6.4 141 12-171 32-196 (272)
429 KOG0373|consensus 98.8 3E-08 6.5E-13 94.3 9.9 116 628-752 46-170 (306)
430 PRK09183 transposase/IS protei 98.8 7.1E-09 1.5E-13 108.6 6.2 107 420-549 104-214 (259)
431 smart00382 AAA ATPases associa 98.8 4.2E-08 9.2E-13 93.1 10.6 129 13-153 2-145 (148)
432 TIGR02031 BchD-ChlD magnesium 98.8 1.3E-07 2.9E-12 110.4 16.5 181 13-217 16-240 (589)
433 PRK07132 DNA polymerase III su 98.8 1.2E-07 2.6E-12 100.5 14.5 152 395-595 3-159 (299)
434 PRK08699 DNA polymerase III su 98.8 1.1E-07 2.3E-12 102.7 14.3 143 11-166 19-183 (325)
435 smart00382 AAA ATPases associa 98.7 5.5E-08 1.2E-12 92.4 10.8 118 420-540 4-125 (148)
436 TIGR00368 Mg chelatase-related 98.7 6.6E-08 1.4E-12 109.9 12.6 133 13-159 211-395 (499)
437 PRK08939 primosomal protein Dn 98.7 7.6E-08 1.7E-12 102.9 12.3 109 420-549 158-269 (306)
438 PF01078 Mg_chelatase: Magnesi 98.7 5.9E-09 1.3E-13 102.4 3.4 104 13-136 22-164 (206)
439 TIGR00040 yfcE phosphoesterase 98.7 4.8E-08 1E-12 94.8 9.6 61 631-696 4-64 (158)
440 TIGR01817 nifA Nif-specific re 98.7 6.9E-08 1.5E-12 112.9 12.7 157 11-190 217-408 (534)
441 PRK11608 pspF phage shock prot 98.7 1.6E-07 3.6E-12 102.1 14.5 160 11-190 27-220 (326)
442 KOG0478|consensus 98.7 1.1E-07 2.3E-12 106.0 12.4 183 381-588 422-616 (804)
443 COG0606 Predicted ATPase with 98.7 1.4E-07 2.9E-12 102.5 12.5 128 13-160 198-384 (490)
444 TIGR02442 Cob-chelat-sub cobal 98.7 2.3E-07 5.1E-12 109.8 15.7 137 14-166 26-212 (633)
445 PTZ00111 DNA replication licen 98.7 2.6E-07 5.6E-12 109.1 15.7 144 10-169 489-658 (915)
446 COG1239 ChlI Mg-chelatase subu 98.7 3.8E-07 8.3E-12 97.7 14.8 72 86-169 145-233 (423)
447 PRK15455 PrkA family serine pr 98.7 4E-07 8.6E-12 101.8 15.4 187 388-598 76-346 (644)
448 PRK08116 hypothetical protein; 98.7 1.4E-07 3.1E-12 99.2 11.3 130 14-156 115-250 (268)
449 PF12775 AAA_7: P-loop contain 98.7 2E-07 4.3E-12 98.1 12.3 155 420-601 35-196 (272)
450 PRK13406 bchD magnesium chelat 98.6 2.4E-07 5.1E-12 107.1 13.9 175 419-624 26-206 (584)
451 PRK06921 hypothetical protein; 98.6 5.4E-08 1.2E-12 102.1 7.8 105 420-547 119-231 (266)
452 PF13173 AAA_14: AAA domain 98.6 1.1E-07 2.4E-12 88.5 9.1 123 14-159 3-126 (128)
453 COG1221 PspF Transcriptional r 98.6 2.7E-07 5.9E-12 100.0 13.2 180 11-216 99-310 (403)
454 KOG2227|consensus 98.6 2.5E-07 5.5E-12 99.2 12.6 220 388-652 150-381 (529)
455 TIGR02329 propionate_PrpR prop 98.6 2.9E-07 6.3E-12 105.5 13.4 177 11-207 233-439 (526)
456 COG3829 RocR Transcriptional r 98.6 7.9E-08 1.7E-12 105.6 8.1 160 11-190 266-459 (560)
457 PF13173 AAA_14: AAA domain 98.6 2.3E-07 4.9E-12 86.5 10.1 124 420-590 4-127 (128)
458 PRK12377 putative replication 98.6 1.1E-07 2.3E-12 98.2 8.6 114 13-147 101-222 (248)
459 PRK15424 propionate catabolism 98.6 3.9E-07 8.4E-12 104.3 14.0 163 11-185 240-433 (538)
460 PF00158 Sigma54_activat: Sigm 98.6 9E-08 1.9E-12 93.0 7.5 119 11-149 20-164 (168)
461 COG2204 AtoC Response regulato 98.6 3.7E-07 8E-12 100.8 13.0 160 11-190 162-354 (464)
462 PRK11388 DNA-binding transcrip 98.6 2.7E-07 5.9E-12 110.5 12.7 158 11-191 346-535 (638)
463 KOG0377|consensus 98.6 1.8E-08 4E-13 105.1 2.1 119 631-751 168-291 (631)
464 PF00493 MCM: MCM2/3/5 family 98.6 7E-08 1.5E-12 104.9 6.6 196 381-598 17-221 (331)
465 PF03215 Rad17: Rad17 cell cyc 98.6 2.4E-06 5.2E-11 97.5 18.8 222 390-647 21-268 (519)
466 PRK10820 DNA-binding transcrip 98.6 4.4E-07 9.6E-12 105.1 13.2 159 12-190 226-417 (520)
467 COG1241 MCM2 Predicted ATPase 98.6 8.5E-07 1.8E-11 102.3 14.9 201 380-599 278-484 (682)
468 cd00841 MPP_YfcE Escherichia c 98.5 2.1E-07 4.7E-12 90.0 8.4 57 631-696 3-59 (155)
469 PRK08181 transposase; Validate 98.5 2E-07 4.2E-12 97.5 8.6 105 12-131 105-209 (269)
470 PRK09862 putative ATP-dependen 98.5 5.7E-07 1.2E-11 101.7 12.7 128 13-158 210-391 (506)
471 TIGR00764 lon_rel lon-related 98.5 1.2E-06 2.6E-11 102.6 15.8 118 86-214 218-370 (608)
472 PRK05022 anaerobic nitric oxid 98.5 9.5E-07 2E-11 102.4 14.9 160 11-190 208-400 (509)
473 PRK09453 phosphodiesterase; Pr 98.5 4.5E-07 9.8E-12 90.2 10.6 66 631-697 4-77 (182)
474 KOG1942|consensus 98.5 1.1E-06 2.3E-11 88.3 12.8 96 86-193 297-401 (456)
475 KOG0480|consensus 98.5 7.8E-07 1.7E-11 98.5 12.9 199 376-598 333-542 (764)
476 PF01637 Arch_ATPase: Archaeal 98.5 2E-07 4.4E-12 97.0 7.9 176 13-194 20-227 (234)
477 PRK15429 formate hydrogenlyase 98.5 1.3E-06 2.9E-11 105.3 15.3 160 11-190 397-589 (686)
478 COG5245 DYN1 Dynein, heavy cha 98.5 1.9E-05 4E-10 94.6 23.3 143 9-170 1490-1660(3164)
479 PF12774 AAA_6: Hydrolytic ATP 98.5 2E-06 4.4E-11 87.9 13.4 134 420-594 34-176 (231)
480 PRK05917 DNA polymerase III su 98.5 1.8E-06 3.9E-11 90.3 13.2 127 11-155 17-154 (290)
481 KOG0927|consensus 98.5 1.5E-06 3.3E-11 94.9 12.8 63 130-192 223-294 (614)
482 COG1484 DnaC DNA replication p 98.5 4.8E-07 1E-11 94.2 8.7 103 12-131 104-209 (254)
483 PRK06921 hypothetical protein; 98.4 9E-07 1.9E-11 93.0 10.4 122 12-147 116-240 (266)
484 PF05729 NACHT: NACHT domain 98.4 2.2E-06 4.8E-11 83.8 12.5 146 16-169 3-164 (166)
485 PRK07952 DNA replication prote 98.4 8.3E-07 1.8E-11 91.4 9.2 115 14-147 100-221 (244)
486 smart00763 AAA_PrkA PrkA AAA d 98.4 3.1E-06 6.8E-11 90.7 13.8 95 87-190 238-348 (361)
487 PRK06835 DNA replication prote 98.4 7.9E-07 1.7E-11 95.8 9.3 119 13-148 183-306 (329)
488 PF01695 IstB_IS21: IstB-like 98.4 2.9E-07 6.4E-12 90.5 5.2 99 11-131 45-150 (178)
489 KOG0066|consensus 98.4 1.1E-06 2.4E-11 92.7 9.5 37 480-516 712-749 (807)
490 PRK06526 transposase; Provisio 98.4 6.3E-07 1.4E-11 93.3 7.7 76 10-99 95-173 (254)
491 COG3604 FhlA Transcriptional r 98.4 1.2E-06 2.6E-11 95.2 9.9 161 11-190 244-436 (550)
492 PF01637 Arch_ATPase: Archaeal 98.4 1.8E-06 3.8E-11 89.8 11.1 189 391-624 2-222 (234)
493 PF14532 Sigma54_activ_2: Sigm 98.4 1.8E-07 3.9E-12 88.4 2.9 113 11-155 19-136 (138)
494 PF13401 AAA_22: AAA domain; P 98.4 4.8E-07 1E-11 84.8 5.4 108 420-541 6-126 (131)
495 PF13401 AAA_22: AAA domain; P 98.4 1.6E-06 3.5E-11 81.2 8.8 110 11-130 2-125 (131)
496 PRK07132 DNA polymerase III su 98.4 8.9E-06 1.9E-10 86.4 15.3 135 12-166 17-160 (299)
497 TIGR02915 PEP_resp_reg putativ 98.3 3.3E-06 7.1E-11 97.1 13.1 155 12-190 161-352 (445)
498 PRK06581 DNA polymerase III su 98.3 6.5E-06 1.4E-10 82.0 12.8 135 419-598 16-161 (263)
499 PF00910 RNA_helicase: RNA hel 98.3 8.3E-07 1.8E-11 79.6 5.9 94 421-540 1-107 (107)
500 PHA00729 NTP-binding motif con 98.3 1.8E-06 3.9E-11 86.6 8.8 115 14-166 18-138 (226)
No 1
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-94 Score=815.64 Aligned_cols=586 Identities=60% Similarity=0.971 Sum_probs=541.6
Q ss_pred cCCCCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCE
Q psy2887 8 ENFYFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDI 87 (899)
Q Consensus 8 ~~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~ 87 (899)
.+||+++|.+|+|+||+|||.++..+|.++..+++|..|.+.+++++|++.+.+|++|+|++|++++.+++++.+.. +.
T Consensus 186 L~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~-~v 264 (786)
T COG0542 186 LSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSK-NV 264 (786)
T ss_pred HhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCC-Ce
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999776 99
Q ss_pred EEEEccccccccCCCCCc-hhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHHHHHHHHHh
Q psy2887 88 IIFIDELHTMIGTGKVEG-SIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRG 166 (899)
Q Consensus 88 iL~iDEi~~l~~~~~~~~-~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~il~~ 166 (899)
||||||+|.+.+.+..+| +.++.|.|++.|++|.+.+|||||..+|+++++.|+||.|||+.|.+++|+.++...||+.
T Consensus 265 ILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrG 344 (786)
T COG0542 265 ILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRG 344 (786)
T ss_pred EEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHH
Confidence 999999999999988766 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHHHHHHHhh
Q psy2887 167 LQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKRE 246 (899)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 246 (899)
+.++|+.+|+|.++|+++.+++.+|.+|+++|++|++|++++|+|++..++... .|..+..+++++.+++.+.+.+.++
T Consensus 345 lk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l~~~-~p~~l~~~~~~~~~l~~e~~~~~~e 423 (786)
T COG0542 345 LKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRLEID-KPEELDELERELAQLEIEKEALERE 423 (786)
T ss_pred HHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHhccc-CCcchhHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999998 9999999999999999999998888
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccchHhhhhhhhcchHHHHHH
Q psy2887 247 YDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERI 326 (899)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (899)
.+.. ++...+.+..+++ ..++.++++
T Consensus 424 ~~~~----------------------------~k~~~~~~~~~~~--------------------------~~~~~~~~~ 449 (786)
T COG0542 424 QDEK----------------------------EKKLIDEIIKLKE--------------------------GRIPELEKE 449 (786)
T ss_pred hhHH----------------------------HHHHHHHHHHHhh--------------------------hhhhhHHHH
Confidence 6510 1111111111110 112223322
Q ss_pred HHHhhhhcccCCCccccccccccCcChHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHH
Q psy2887 327 LKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRR 406 (899)
Q Consensus 327 l~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~v~gq~~~~~~l~~~i~~ 406 (899)
+. . .|++++|+.+++.|+|+|+.++.+.+.+.+.++++.|.+.|+||++|+..+.+++++
T Consensus 450 ~~-------------------~-~v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrr 509 (786)
T COG0542 450 LE-------------------A-EVDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRR 509 (786)
T ss_pred Hh-------------------h-ccCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHH
Confidence 21 1 289999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHH
Q psy2887 407 SRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIV 486 (899)
Q Consensus 407 ~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~ 486 (899)
.+.|+.+|++|.+++||.||+|+|||.||++||..||++...++++|||+|..+|++++++|++||||||++++.|++++
T Consensus 510 aRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaV 589 (786)
T COG0542 510 ARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAV 589 (786)
T ss_pred HhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcC----cHHHHHHHHHH
Q psy2887 487 RRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKG----DKEIIKLAVMN 562 (899)
Q Consensus 487 ~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~----~~~~~~~~~~~ 562 (899)
++.|++||+||||+|+||+++|.|||+||+|+++|+.|++++|+|++||||||.|++.+.+.... .+......+++
T Consensus 590 Rr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~ 669 (786)
T COG0542 590 RRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVME 669 (786)
T ss_pred hcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988876542 35677888999
Q ss_pred HHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCcccccccccccHHH
Q psy2887 563 EVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKS 642 (899)
Q Consensus 563 ~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~ 642 (899)
.+++.|+|+|++|+|.+|+|.|++++++.+|+...|.++..++..+++.+.+++++.++|++.+|++.||+|.+.+.
T Consensus 670 ~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~--- 746 (786)
T COG0542 670 ELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRA--- 746 (786)
T ss_pred HHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHH---
Confidence 99999999999999999999999999999999999999999999889999999999999999999999999999998
Q ss_pred HHHHHHHhhccCCccceeeccccCCCCceEehhHH
Q psy2887 643 LSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLR 677 (899)
Q Consensus 643 l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~~~ 677 (899)
+++.+ .++....++.|.+.+.+...+.+-+
T Consensus 747 Iq~~i-----~~~La~~iL~g~~~~~~~v~v~~~~ 776 (786)
T COG0542 747 IQQEI-----EDPLADEILFGKIEDGGTVKVDVDD 776 (786)
T ss_pred HHHHH-----HHHHHHHHHhcccCCCcEEEEEecC
Confidence 88888 6788888999999997777665543
No 2
>PRK10865 protein disaggregation chaperone; Provisional
Probab=100.00 E-value=3.7e-80 Score=741.01 Aligned_cols=653 Identities=58% Similarity=0.949 Sum_probs=604.4
Q ss_pred CCCCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEE
Q psy2887 9 NFYFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDII 88 (899)
Q Consensus 9 ~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~i 88 (899)
.|++++|++|+||||||||++|+.+|..+..+.+|..+.+.+++.++++.+..|.++.|+++++++.+|+++....+++|
T Consensus 195 ~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~I 274 (857)
T PRK10865 195 QRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVI 274 (857)
T ss_pred hcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999865567899
Q ss_pred EEEccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHHHHHHHHHhhh
Q psy2887 89 IFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQ 168 (899)
Q Consensus 89 L~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~il~~~~ 168 (899)
|||||+|.|.+++.+.++.++.+.|++.+++|.+.+|++||..+|++++..|+++.|||+.|.++.|+.+++..||+.+.
T Consensus 275 LfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 275 LFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred EEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 99999999998887778888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHHHHHHHhhcc
Q psy2887 169 KKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYD 248 (899)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 248 (899)
+.|+.+|++.++++++..++.++.+|+.++++|++|++++|.+++.+++...+.|..++++++.+..+..+.+.+..+.+
T Consensus 355 ~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~ 434 (857)
T PRK10865 355 ERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESD 434 (857)
T ss_pred hhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHHHHHHHHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccchHhhhhhhhcchHHHHHHHH
Q psy2887 249 ESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILK 328 (899)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 328 (899)
..+..|+.++++++.+.++++..+...|..++..+.+....+++++.++.+.+.+...+++..++++.+..++.++++++
T Consensus 435 ~~~~~~~~~l~~~l~~lq~e~~~L~eq~k~~k~el~~~~~~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (857)
T PRK10865 435 EASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLA 514 (857)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHH
Confidence 77788899999999999999999999999999888888888888888888888888888999999999999999988887
Q ss_pred HhhhhcccCCCccccccccccCcChHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhh
Q psy2887 329 EKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSR 408 (899)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~v~gq~~~~~~l~~~i~~~~ 408 (899)
..+..... ...++++.|+.++|+.+++.|||+|+.++...+...+.++++.|.+.++||+.+++.|..++.+.+
T Consensus 515 ~~~~~~~~------~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~ 588 (857)
T PRK10865 515 AATQLEGK------TMRLLRNKVTDAEIAEVLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSR 588 (857)
T ss_pred HHHhhhcc------ccccccCccCHHHHHHHHHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHH
Confidence 76543211 234667889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHh
Q psy2887 409 SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRR 488 (899)
Q Consensus 409 ~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~ 488 (899)
.++.+|++|.+++||+||||||||++|++||+.+++.+.++++++|+++...+..++++|.+++|+|+.+++.+.+.++.
T Consensus 589 ~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~ 668 (857)
T PRK10865 589 AGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRR 668 (857)
T ss_pred hcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHh
Confidence 99999999988999999999999999999999999888899999999998888889999999999999998889999999
Q ss_pred CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcC-cHHHHHHHHHHHHhhc
Q psy2887 489 KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKG-DKEIIKLAVMNEVKIY 567 (899)
Q Consensus 489 ~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~-~~~~~~~~~~~~l~~~ 567 (899)
.+++||||||++++++.+++.|+++|++|.++++.|+++++++++||+|||.+.+.+...++. .+..+...+...+.+.
T Consensus 669 ~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (857)
T PRK10865 669 RPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHN 748 (857)
T ss_pred CCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHccc
Confidence 999999999999999999999999999999999999999999999999999998876654443 3455666777888999
Q ss_pred CChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 568 FRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 568 ~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
|+|+|++|+|.++.|.|++.+++.+|++.++.++..+++..++.+.++++++++|++.+|++.||+|.|.++ +++.+
T Consensus 749 f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~---I~~~i 825 (857)
T PRK10865 749 FRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRA---IQQQI 825 (857)
T ss_pred ccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHH---HHHHH
Confidence 999999999999999999999999999999999888887778888999999999999999999999999999 88888
Q ss_pred HHhhccCCccceeeccccCCCCceEehh
Q psy2887 648 KKIHKKSPEANFIFLGDLINKGPQSLDT 675 (899)
Q Consensus 648 ~~~~~~~~~~~li~~GD~~d~g~~~~~~ 675 (899)
.++.+..++.|.+.++++..+.+
T Consensus 826 -----~~~la~~iL~g~~~~~~~~~~~~ 848 (857)
T PRK10865 826 -----ENPLAQQILSGELVPGKVIRLEV 848 (857)
T ss_pred -----HHHHHHHHHcCcCCCCCEEEEEE
Confidence 66778889999999998887754
No 3
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=100.00 E-value=5.9e-80 Score=735.99 Aligned_cols=637 Identities=41% Similarity=0.671 Sum_probs=562.6
Q ss_pred CCCCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEE
Q psy2887 9 NFYFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDII 88 (899)
Q Consensus 9 ~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~i 88 (899)
.++.++|++|+||||||||++|+.+|+.+..+.+|..+.+.+++.++++.+.+|.++.|+++.+++.+++++....+++|
T Consensus 204 ~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~I 283 (852)
T TIGR03345 204 LRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPII 283 (852)
T ss_pred hcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeE
Confidence 57889999999999999999999999999999999999999999999999998999999999999999999976667899
Q ss_pred EEEccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHHHHHHHHHhhh
Q psy2887 89 IFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQ 168 (899)
Q Consensus 89 L~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~il~~~~ 168 (899)
|||||+|.|.+.+.+.+.+++.+.|++.+++|.+.||+|||..+|++++.+|++|.|||+.|.+++|+.+++..||+.+.
T Consensus 284 LfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 284 LFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred EEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 99999999998876667778889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHHHHHHHhhcc
Q psy2887 169 KKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYD 248 (899)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 248 (899)
..|+.++++.++++++..++.++.+|++++++|++|++++|+|++.+++...+.|..+..+++.+..+..+.+.+..+..
T Consensus 364 ~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (852)
T TIGR03345 364 PVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAA 443 (852)
T ss_pred HhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998866532
Q ss_pred h--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccchHhhhhhhhcchHHHHHH
Q psy2887 249 E--SSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERI 326 (899)
Q Consensus 249 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (899)
. ....+..+++++++.++.++..+...|..++...+....++.+.... ...........+..+++++.+
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 514 (852)
T TIGR03345 444 LGADHDERLAELRAELAALEAELAALEARWQQEKELVEAILALRAELEAD---------ADAPADDDAALRAQLAELEAA 514 (852)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---------ccchhhhhHHHHHHHHHHHHH
Confidence 1 22346667778888899999999999988876554443333222110 001112333444556667766
Q ss_pred HHHhhhhcccCCCccccccccccCcChHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHH
Q psy2887 327 LKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRR 406 (899)
Q Consensus 327 l~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~v~gq~~~~~~l~~~i~~ 406 (899)
+..++. +..+....|+.++|+.+++.|+|||+.++...+...+.++++.|.+.|+||+.+++.+..++.+
T Consensus 515 ~~~~~~----------~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~ 584 (852)
T TIGR03345 515 LASAQG----------EEPLVFPEVDAQAVAEVVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRT 584 (852)
T ss_pred HHHHhh----------ccccccceecHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHH
Confidence 666554 2235567899999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHH
Q psy2887 407 SRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIV 486 (899)
Q Consensus 407 ~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~ 486 (899)
.+.|+.+|.+|.+++||+||||||||++|++||+.+++....++++||++|...+.+++++|.++||+|+.+++.+.+.+
T Consensus 585 ~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v 664 (852)
T TIGR03345 585 ARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAV 664 (852)
T ss_pred HhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHH
Confidence 99999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcC-----cHHHHHHHHH
Q psy2887 487 RRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKG-----DKEIIKLAVM 561 (899)
Q Consensus 487 ~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~-----~~~~~~~~~~ 561 (899)
+.+|++||+||||+++++.+++.|+++|++|.++|+.|+.+++++++||+|||.+.+.+.+...+ ....+...++
T Consensus 665 ~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (852)
T TIGR03345 665 RRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALR 744 (852)
T ss_pred HhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988775432 2456677788
Q ss_pred HHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhc-CcceeecHHHHHHHHhcccCcccccccccccH
Q psy2887 562 NEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKM-NMDLKISKAALKKISNIGFDLIYGARDVHGCK 640 (899)
Q Consensus 562 ~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~-~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~ 640 (899)
+.+.+.|+|+|++|++ +|+|.|++.+++.+|+...+.++.+++... ++.+.++++++++|++.+|++.+|+|.+.+.
T Consensus 745 ~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~- 822 (852)
T TIGR03345 745 PELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAI- 822 (852)
T ss_pred HHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHH-
Confidence 8999999999999996 999999999999999999999998887766 8899999999999999999999999999998
Q ss_pred HHHHHHHHHhhccCCccceeeccccCCCCceEe
Q psy2887 641 KSLSILLKKIHKKSPEANFIFLGDLINKGPQSL 673 (899)
Q Consensus 641 ~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~ 673 (899)
+++.+ .++.+..++.|-.-...+..+
T Consensus 823 --Ie~~i-----~~~la~~~l~~~~~~~~~~~~ 848 (852)
T TIGR03345 823 --LNQTL-----LPELSRQILERLAAGEPIERI 848 (852)
T ss_pred --HHHHH-----HHHHHHHHHhChhcCCCeeEE
Confidence 77766 456666666666555555443
No 4
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=100.00 E-value=1.6e-78 Score=731.80 Aligned_cols=655 Identities=60% Similarity=0.973 Sum_probs=602.1
Q ss_pred CCCCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEE
Q psy2887 9 NFYFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDII 88 (899)
Q Consensus 9 ~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~i 88 (899)
.++.++|++|+||||||||++++.+|..+..+.+|..+.+.+++.++++.+..|.++.|+++.+++.+++++....+++|
T Consensus 190 ~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~I 269 (852)
T TIGR03346 190 SRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQII 269 (852)
T ss_pred hcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeE
Confidence 57889999999999999999999999999999999999999999999999998999999999999999999876566899
Q ss_pred EEEccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHHHHHHHHHhhh
Q psy2887 89 IFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQ 168 (899)
Q Consensus 89 L~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~il~~~~ 168 (899)
|||||+|.|++.+.+.++.++.+.|++.++++.+.+|++||..+|++++..|+++.|||+.|.++.|+.+++..||+.+.
T Consensus 270 LfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 270 LFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred EEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 99999999998776666778899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHHHHHHHhhcc
Q psy2887 169 KKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYD 248 (899)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 248 (899)
..|+.++++.++++++..++.++.+|++++++|++|++++|+|++.+++.....|..+..+++++..+..+.+.+.++.+
T Consensus 350 ~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (852)
T TIGR03346 350 ERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKD 429 (852)
T ss_pred HHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcch
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999987766
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccchHhhhhhhhcchHHHHHHHH
Q psy2887 249 ESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILK 328 (899)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 328 (899)
.....+.+.+++++.+++.++..+...|..++...++...+++.+...+.+...++..+++.+++.+.+..++.+++.+.
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (852)
T TIGR03346 430 EASKERLEDLEKELAELEEEYADLEEQWKAEKAAIQGIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQ 509 (852)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHH
Confidence 66678888999999999999999999999999988888888888877777777777888888888888888998888887
Q ss_pred HhhhhcccCCCccccccccccCcChHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhh
Q psy2887 329 EKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSR 408 (899)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~v~gq~~~~~~l~~~i~~~~ 408 (899)
.++....+. ....+.+..|+.++|..+++.|+|+|..++...+...+.++++.|.+.|+||+.+++.+..++.+.+
T Consensus 510 ~~~~~~~~~----~~~~l~~~~v~~~~i~~v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~ 585 (852)
T TIGR03346 510 AAEAKLGEE----TKPRLLREEVTAEEIAEVVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSR 585 (852)
T ss_pred HHHHHhhhc----cccccccCCcCHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHh
Confidence 766432110 0123556789999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHh
Q psy2887 409 SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRR 488 (899)
Q Consensus 409 ~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~ 488 (899)
.++..|.+|.+++||+||||||||++|++||+.+++++.+++++||+++...+..+.++|.++||+|+.+++.+++.++.
T Consensus 586 ~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~ 665 (852)
T TIGR03346 586 AGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRR 665 (852)
T ss_pred ccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHc
Confidence 99999999999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcC-cHHHHHHHHHHHHhhc
Q psy2887 489 KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKG-DKEIIKLAVMNEVKIY 567 (899)
Q Consensus 489 ~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~-~~~~~~~~~~~~l~~~ 567 (899)
.|++|||||||+++++.+++.|+++|++|+++|..|+++++++++||+|||.+.+.+....+. ++..+...+++.+.+.
T Consensus 666 ~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (852)
T TIGR03346 666 KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAH 745 (852)
T ss_pred CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999877664332 4566777788889999
Q ss_pred CChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 568 FRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 568 ~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
|+|+|++|||.++.|.|++++++.+|+...+..+.+++...++.+.++++++++|++.+|++.+|+|.|.+. +++.+
T Consensus 746 F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~---i~~~i 822 (852)
T TIGR03346 746 FRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRA---IQREI 822 (852)
T ss_pred cCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHH---HHHHH
Confidence 999999999999999999999999999999999998888888889999999999999999999999999999 88888
Q ss_pred HHhhccCCccceeeccccCCCCceEehh
Q psy2887 648 KKIHKKSPEANFIFLGDLINKGPQSLDT 675 (899)
Q Consensus 648 ~~~~~~~~~~~li~~GD~~d~g~~~~~~ 675 (899)
.++....++.|.+.++++..+.+
T Consensus 823 -----~~~l~~~~l~~~~~~~~~~~~~~ 845 (852)
T TIGR03346 823 -----ENPLAKKILAGEVADGDTIVVDV 845 (852)
T ss_pred -----HHHHHHHHHhCCCCCCCEEEEEe
Confidence 67788889999999988877654
No 5
>CHL00095 clpC Clp protease ATP binding subunit
Probab=100.00 E-value=7.9e-76 Score=706.95 Aligned_cols=610 Identities=50% Similarity=0.795 Sum_probs=535.9
Q ss_pred CCCCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEE
Q psy2887 9 NFYFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDII 88 (899)
Q Consensus 9 ~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~i 88 (899)
.++.++|++|+||||||||++|+.+|..+..+.+|..+.+.+++.++++.+.+|++|.|+++++++.+++++.. .+++|
T Consensus 196 ~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~-~~~~I 274 (821)
T CHL00095 196 GRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQE-NNNII 274 (821)
T ss_pred cccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHh-cCCeE
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999974 45899
Q ss_pred EEEccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHHHHHHHHHhhh
Q psy2887 89 IFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQ 168 (899)
Q Consensus 89 L~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~il~~~~ 168 (899)
|||||+|.|++.+...++.++.+.|++.++++.+.+|++||..+|++++..|++|.+||+.|.+++|+.++...|++.+.
T Consensus 275 LfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~ 354 (821)
T CHL00095 275 LVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLR 354 (821)
T ss_pred EEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHH
Confidence 99999999998876666778999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHHHHHHHhhcc
Q psy2887 169 KKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYD 248 (899)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 248 (899)
..|+..+++.++++++..++.++.+|++++++|++|++++|+|++.+++.....|..+..+++++..+..+.+.+..+.+
T Consensus 355 ~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (821)
T CHL00095 355 SRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQD 434 (821)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcc
Confidence 99998899999999999999999999999999999999999999999998888899999999999888888777765543
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccchHhhhhhhhcchHHHHHHHH
Q psy2887 249 ESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILK 328 (899)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 328 (899)
. ++...++.+..+++.++..+...|..++.
T Consensus 435 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------- 464 (821)
T CHL00095 435 F---ETAKQLRDREMEVRAQIAAIIQSKKTEEE----------------------------------------------- 464 (821)
T ss_pred h---HHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----------------------------------------------
Confidence 2 11222222222223333222222221100
Q ss_pred HhhhhcccCCCccccccccccCcChHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhh
Q psy2887 329 EKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSR 408 (899)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~v~gq~~~~~~l~~~i~~~~ 408 (899)
.......|+.+||..+++.|+|+|..++...+...+.++++.|.+.|+||++|++.|..++.+.+
T Consensus 465 ---------------~~~~~~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~ 529 (821)
T CHL00095 465 ---------------KRLEVPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRAR 529 (821)
T ss_pred ---------------ccccCCccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHh
Confidence 00113579999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHh
Q psy2887 409 SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRR 488 (899)
Q Consensus 409 ~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~ 488 (899)
.|+..|.+|.+++||+||||||||++|++||+.+|+.+.+++++|++++.+.+.++.++|+++||+|+++++.+.+.++.
T Consensus 530 ~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~ 609 (821)
T CHL00095 530 VGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRK 609 (821)
T ss_pred hcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHh
Confidence 99999999998999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhh-----hc--------CcHHH
Q psy2887 489 KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEM-----EK--------GDKEI 555 (899)
Q Consensus 489 ~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~-----~~--------~~~~~ 555 (899)
.|++||+|||+|++++++++.|+++||+|+++|..|+++++++++||+|||.+.+.+... ++ ..+..
T Consensus 610 ~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~ 689 (821)
T CHL00095 610 KPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKR 689 (821)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHH
Confidence 999999999999999999999999999999999999999999999999999998866532 11 12455
Q ss_pred HHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCccccccc
Q psy2887 556 IKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARD 635 (899)
Q Consensus 556 ~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~d 635 (899)
+...+.+.+.+.|+|+|++|+|.+|+|.|++.+++.+|++..+.++.++++.+++.+.++++++++|++.+|++.+|+|.
T Consensus 690 ~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~ 769 (821)
T CHL00095 690 LSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARP 769 (821)
T ss_pred HHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhh
Confidence 67777888999999999999999999999999999999999999999889888999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhhccCCccceeeccccCCCCceEehhHHHHHhcCCccEEEccCChHhH
Q psy2887 636 VHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHL 697 (899)
Q Consensus 636 i~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~~~~l~~~~~~~~~v~GNHe~~~ 697 (899)
|+++ +++.+ .++....++.|.+..+++..+.+- -...+...+=|.+..+
T Consensus 770 l~r~---i~~~i-----~~~l~~~~l~~~~~~g~~v~~~~~-----~~~~~~~~~~~~~~~~ 818 (821)
T CHL00095 770 LRRA---IMRLL-----EDPLAEEVLSFKIKPGDIIIVDVN-----DEKEVKILLINKDNLI 818 (821)
T ss_pred HHHH---HHHHH-----HHHHHHHHHhCccCCCCEEEEEEe-----CCCcEEEEecccchhh
Confidence 9999 88888 667788888999888888777651 1223445555555433
No 6
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=9.2e-73 Score=659.75 Aligned_cols=531 Identities=45% Similarity=0.741 Sum_probs=483.2
Q ss_pred CCCCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEE
Q psy2887 9 NFYFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDII 88 (899)
Q Consensus 9 ~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~i 88 (899)
.++.++|+||+||||||||++|+.+|..+...++|..+.++.++.+++..+..|.++.|+++.+++.++..+.+. +++|
T Consensus 203 ~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~-~~~I 281 (758)
T PRK11034 203 CRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQD-TNSI 281 (758)
T ss_pred hccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhc-CCCE
Confidence 356789999999999999999999999998899999999999999999999999999999999999999988743 4789
Q ss_pred EEEccccccccCCCC-CchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHHHHHHHHHhh
Q psy2887 89 IFIDELHTMIGTGKV-EGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGL 167 (899)
Q Consensus 89 L~iDEi~~l~~~~~~-~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~il~~~ 167 (899)
|||||+|.|++.+.. .+..++.+.|++.++++.+.+|++||.++|.+++..|++|.|||+.|.+++|+.+++..||+.+
T Consensus 282 LfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 282 LFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred EEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 999999999987753 4567888999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHHHHHHHhhc
Q psy2887 168 QKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREY 247 (899)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~ 247 (899)
...|+.+|++.++++++..++.++.+|++++++|+++++++|+|++.+++....
T Consensus 362 ~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~~~~-------------------------- 415 (758)
T PRK11034 362 KPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVS-------------------------- 415 (758)
T ss_pred HHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhccCccc--------------------------
Confidence 999999999999999999999999999999999999999999999876531000
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccchHhhhhhhhcchHHHHHHH
Q psy2887 248 DESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERIL 327 (899)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 327 (899)
T Consensus 416 -------------------------------------------------------------------------------- 415 (758)
T PRK11034 416 -------------------------------------------------------------------------------- 415 (758)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhcccCCCccccccccccCcChHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHh
Q psy2887 328 KEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRS 407 (899)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~v~gq~~~~~~l~~~i~~~ 407 (899)
.....|+.+||..+++.|+|+|...+...+...+.++++.|.+.|+||+++++.|..++...
T Consensus 416 ------------------~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~ 477 (758)
T PRK11034 416 ------------------KRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMS 477 (758)
T ss_pred ------------------ccccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHH
Confidence 00124778999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHH
Q psy2887 408 RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVR 487 (899)
Q Consensus 408 ~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~ 487 (899)
+.|+..+.+|.+++||+||||||||++|+++|+.+ +.+++.+||+++...+..++++|.++||+|+..++.+++.++
T Consensus 478 ~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l---~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~ 554 (758)
T PRK11034 478 RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVI 554 (758)
T ss_pred hccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh---CCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHH
Confidence 99999999999999999999999999999999999 789999999999998889999999999999998889999999
Q ss_pred hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhh-cCcHHHHHHHHHHHHhh
Q psy2887 488 RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEME-KGDKEIIKLAVMNEVKI 566 (899)
Q Consensus 488 ~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~-~~~~~~~~~~~~~~l~~ 566 (899)
..|++||||||||++++++++.|+++|++|.++|..|+++++++++||+|||.+.+.+.... +.........+.+.+++
T Consensus 555 ~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~ 634 (758)
T PRK11034 555 KHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKK 634 (758)
T ss_pred hCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987654421 11111112345567888
Q ss_pred cCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCcccccccccccHHHHHHH
Q psy2887 567 YFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSIL 646 (899)
Q Consensus 567 ~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~ 646 (899)
.|+|+|++|+|.+|.|+|++.+++.+|+...+.++.++++.+++.+.++++++++|++.+|++.+|+|.|++. +++.
T Consensus 635 ~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~---i~~~ 711 (758)
T PRK11034 635 IFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARV---IQDN 711 (758)
T ss_pred hcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHH---HHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 8888
Q ss_pred HHHhhccCCccceeeccccCCCCceEehh
Q psy2887 647 LKKIHKKSPEANFIFLGDLINKGPQSLDT 675 (899)
Q Consensus 647 l~~~~~~~~~~~li~~GD~~d~g~~~~~~ 675 (899)
+ .++.+..++.|.+.++++..+.+
T Consensus 712 l-----~~~la~~il~~~~~~~~~~~v~~ 735 (758)
T PRK11034 712 L-----KKPLANELLFGSLVDGGQVTVAL 735 (758)
T ss_pred H-----HHHHHHHHHhCcccCCCEEEEEE
Confidence 8 67788889999999988877654
No 7
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=4.6e-72 Score=667.33 Aligned_cols=529 Identities=48% Similarity=0.786 Sum_probs=484.5
Q ss_pred CCCCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEE
Q psy2887 9 NFYFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDII 88 (899)
Q Consensus 9 ~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~i 88 (899)
.++.++|+||+||||||||++|+++|+++..+.+|..+.++.++.++++.+..|.++.|+++++++.+++++... .++|
T Consensus 199 ~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~-~~~I 277 (731)
T TIGR02639 199 CRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKE-PNAI 277 (731)
T ss_pred hcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhcc-CCeE
Confidence 467889999999999999999999999999999999999999999999999999999999999999999998744 5899
Q ss_pred EEEccccccccCCCC-CchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHHHHHHHHHhh
Q psy2887 89 IFIDELHTMIGTGKV-EGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGL 167 (899)
Q Consensus 89 L~iDEi~~l~~~~~~-~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~il~~~ 167 (899)
|||||+|.|++.+.. +++.++.+.|++.++++.+.+|++||..+|++++..|++|.|||+.|.+++|+.+++.+||+.+
T Consensus 278 LfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~ 357 (731)
T TIGR02639 278 LFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGL 357 (731)
T ss_pred EEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHH
Confidence 999999999987653 3446788999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHHHHHHHhhc
Q psy2887 168 QKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREY 247 (899)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~ 247 (899)
...|+.++++.++++++.+++.++.+|++++++|++|++++|++++.+++....
T Consensus 358 ~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~~-------------------------- 411 (731)
T TIGR02639 358 KEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPKA-------------------------- 411 (731)
T ss_pred HHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCccc--------------------------
Confidence 999998899999999999999999999999999999999999999766532100
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccchHhhhhhhhcchHHHHHHH
Q psy2887 248 DESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERIL 327 (899)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 327 (899)
T Consensus 412 -------------------------------------------------------------------------------- 411 (731)
T TIGR02639 412 -------------------------------------------------------------------------------- 411 (731)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhcccCCCccccccccccCcChHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHh
Q psy2887 328 KEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRS 407 (899)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~v~gq~~~~~~l~~~i~~~ 407 (899)
.....|+.+||..+++.++|+|+..+...+...+.++++.|.+.|+||+++++.+..++...
T Consensus 412 ------------------~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~ 473 (731)
T TIGR02639 412 ------------------KKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRS 473 (731)
T ss_pred ------------------ccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHH
Confidence 00235889999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHH
Q psy2887 408 RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVR 487 (899)
Q Consensus 408 ~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~ 487 (899)
+.++..|.+|.+++||+||||||||++|+++|+.+ +.++++++|+++...+..+.++|.++||+|+++++.+.+.++
T Consensus 474 ~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l---~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~ 550 (731)
T TIGR02639 474 RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL---GVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVR 550 (731)
T ss_pred hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh---cCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHH
Confidence 99999999999999999999999999999999999 789999999999999999999999999999999999999999
Q ss_pred hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhh-hcCcHHHHHHHHHHHHhh
Q psy2887 488 RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEM-EKGDKEIIKLAVMNEVKI 566 (899)
Q Consensus 488 ~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~-~~~~~~~~~~~~~~~l~~ 566 (899)
..|++||||||||++++++++.|+++|++|.++|..|+++++++++||+|||.+.+.+... .+.......+.+...+.+
T Consensus 551 ~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~ 630 (731)
T TIGR02639 551 KHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKK 630 (731)
T ss_pred hCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999998766542 121223344567788899
Q ss_pred cCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCcccccccccccHHHHHHH
Q psy2887 567 YFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSIL 646 (899)
Q Consensus 567 ~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~ 646 (899)
.|+|+|++|||.+|+|.|++.+++.+|++..++++.+++...++.+.++++++++|++.+|++.+|+|.|.++ +++.
T Consensus 631 ~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~---i~~~ 707 (731)
T TIGR02639 631 LFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARV---IQEE 707 (731)
T ss_pred hcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHH---HHHH
Confidence 9999999999999999999999999999999999999998888999999999999999999999999999999 8888
Q ss_pred HHHhhccCCccceeeccccCCCCceEe
Q psy2887 647 LKKIHKKSPEANFIFLGDLINKGPQSL 673 (899)
Q Consensus 647 l~~~~~~~~~~~li~~GD~~d~g~~~~ 673 (899)
+ .++....++.|.+.+.++..+
T Consensus 708 ~-----~~~l~~~~l~~~~~~~~~~~~ 729 (731)
T TIGR02639 708 I-----KKPLSDEILFGKLKKGGSVKV 729 (731)
T ss_pred h-----HHHHHHHHHhCcCCCCCEEEE
Confidence 8 667788888888888877654
No 8
>KOG1051|consensus
Probab=100.00 E-value=1.1e-67 Score=606.34 Aligned_cols=631 Identities=45% Similarity=0.733 Sum_probs=562.0
Q ss_pred CCCCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEE
Q psy2887 9 NFYFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDII 88 (899)
Q Consensus 9 ~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~i 88 (899)
.|++++|.+|+|+||+|||.++.-+|+.+..+++|..+.+..++.+++..+.+|.++.|+++.+++.+.+++...+++.|
T Consensus 204 ~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvI 283 (898)
T KOG1051|consen 204 SRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVI 283 (898)
T ss_pred hccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEE
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999987677899
Q ss_pred EEEccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHHHHHHHHHhhh
Q psy2887 89 IFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQ 168 (899)
Q Consensus 89 L~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~il~~~~ 168 (899)
|||||+|.+...+...+..++.+.|++.+.++.+.||+||+..+|++.+..+|+|.+||+.+.++.|+.++...||..+.
T Consensus 284 Lfigelh~lvg~g~~~~~~d~~nlLkp~L~rg~l~~IGatT~e~Y~k~iekdPalErrw~l~~v~~pS~~~~~~iL~~l~ 363 (898)
T KOG1051|consen 284 LFLGELHWLVGSGSNYGAIDAANLLKPLLARGGLWCIGATTLETYRKCIEKDPALERRWQLVLVPIPSVENLSLILPGLS 363 (898)
T ss_pred EEecceeeeecCCCcchHHHHHHhhHHHHhcCCeEEEecccHHHHHHHHhhCcchhhCcceeEeccCcccchhhhhhhhh
Confidence 99999999999887777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHHHHHHHhhcc
Q psy2887 169 KKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYD 248 (899)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 248 (899)
..|+.+|++.+++.++..++.++.+|++.+++|+.+++++++|++..+....+.|.++..+++....+..++..++++.+
T Consensus 364 ~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~dEa~a~~~~~~~~lP~wL~~~~~~~~~~~~e~~~L~kk~d 443 (898)
T KOG1051|consen 364 ERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDLEDEAAALVKSQAESLPPWLQNLERVDIKLQDEISELQKKWN 443 (898)
T ss_pred hhhccccCCcccccccccccchhhhhcccCcCchhcccHHHHHHHHHhhhhhhCCHHHHhhhhhhhhhHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccchHhhhhhhhcchHHHHHHHH
Q psy2887 249 ESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILK 328 (899)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 328 (899)
....+|.. .+.+.........+...|..++...+++...++.+.+... ++.++...++..+..+.+..++.-+.. +
T Consensus 444 ~~~h~r~~--~~~~~~~~~~~~~l~~~~~~~~s~~~~l~~~~~~~~~~~~-~~k~~r~~d~~~~~~l~~~~~p~~~~~-~ 519 (898)
T KOG1051|consen 444 QALHKRPS--LESLAPSKPTQQPLSASVDSERSVIEELKLKKNSLDRNSL-LAKAHRPNDYTRETDLRYGRIPDELSE-K 519 (898)
T ss_pred hhhccccc--cccccccccccccchhhhccchhHHhhhccccCCcccchh-hhcccCCCCcchhhhccccccchhhhh-h
Confidence 66666655 3444444455556777787787888888777777766666 788899999999999999988822222 1
Q ss_pred HhhhhcccCCCccccccccccCcChHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhh
Q psy2887 329 EKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSR 408 (899)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~v~gq~~~~~~l~~~i~~~~ 408 (899)
..+ ...+++++..+.+.|+|+|.......+.+.+..|.+.|.+.|+||++|+..|..++.+++
T Consensus 520 ~~~-----------------~~~~~~~i~~~~s~~tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr 582 (898)
T KOG1051|consen 520 SND-----------------NQGGESDISEVVSRWTGIPVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSR 582 (898)
T ss_pred ccc-----------------ccCCccchhhhhhhhcCCchhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhh
Confidence 111 112888999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHh
Q psy2887 409 SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRR 488 (899)
Q Consensus 409 ~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~ 488 (899)
.|+.+| +|..+++|.||.|+|||.||+++|..+|++...++++||++|.. +++++|.++||+|++++++|++.++.
T Consensus 583 ~gl~~~-~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~e---vskligsp~gyvG~e~gg~Lteavrr 658 (898)
T KOG1051|consen 583 AGLKDP-NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQE---VSKLIGSPPGYVGKEEGGQLTEAVKR 658 (898)
T ss_pred cccCCC-CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhh---hhhccCCCcccccchhHHHHHHHHhc
Confidence 999988 78889999999999999999999999999999999999999987 89999999999999999999999999
Q ss_pred CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhc-----C-------cHHHH
Q psy2887 489 KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEK-----G-------DKEII 556 (899)
Q Consensus 489 ~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~-----~-------~~~~~ 556 (899)
.|++||+|||||++++.+++.|++++|+|+++|+.|++++++|++||||+|.+...+..... . .+...
T Consensus 659 rP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~ 738 (898)
T KOG1051|consen 659 RPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLK 738 (898)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEecccchHhhhcccccccccccchhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999998886665432 1 12223
Q ss_pred HHHHHHHHh----hcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCcccc
Q psy2887 557 KLAVMNEVK----IYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYG 632 (899)
Q Consensus 557 ~~~~~~~l~----~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~ 632 (899)
...+.+... ..|+|+|++|+|.++.|.|++.+++.+|+...+....+++...++...+++.+.+.+...+|++.|+
T Consensus 739 k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~i~~~~~~e~~~r~~~~~~~~~v~~~~~~~v~~~~~d~~yg 818 (898)
T KOG1051|consen 739 KVQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRDELIEIVNKQLTEIEKRLEERELLLLVTDRVDDKVLFKGYDFDYG 818 (898)
T ss_pred hhhhhhhhhcccccccChHHhcccceeeeecccchhhHhhhhhhHHHHHHHHhhhhHHHHHHHHHHHhhhhhcCcChHHH
Confidence 445667777 8999999999999999999999999999999999999998888888899999999999999999999
Q ss_pred cccccccHHHHHHHHHHhhccCCccceeeccccCCCCceEe
Q psy2887 633 ARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSL 673 (899)
Q Consensus 633 ~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~ 673 (899)
++.|... +++.+ .......++ |++-+.-...+
T Consensus 819 Ar~ikr~---i~~~~-----~~~la~~~l-~ei~~~~~~~i 850 (898)
T KOG1051|consen 819 ARPIKRS---IEERF-----ENRLAEALL-GEVEDGLTERI 850 (898)
T ss_pred hhHHHHH---HHHHH-----HHHHhhhhe-eeecCCceEEE
Confidence 9999888 66666 333333344 55555554444
No 9
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=100.00 E-value=2e-56 Score=455.33 Aligned_cols=263 Identities=35% Similarity=0.687 Sum_probs=246.5
Q ss_pred ccccccccccHHHHHHHHHHhhccCCccceeeccccCCCCceEehhHHHHHhcCCccEEEccCChHhHHhHhhhcccCch
Q psy2887 630 IYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVLININKKSK 709 (899)
Q Consensus 630 ~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~~~~l~~~~~~~~~v~GNHe~~~l~~~~~~~~~~~ 709 (899)
.|.+||||||+++|+++|++++|++..|+++++||+|||||.|.+|+++++++.+.+.+|+||||.+++.++.+......
T Consensus 3 ~YvIGDIHGc~daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~slevL~~l~~l~~~~~~VlGNHD~~lL~~~~g~~~~~~ 82 (279)
T TIGR00668 3 TYLIGDLHGCYDELQALLERVEFDPGQDTLWLTGDLVARGPGSLEVLRYVKSLGDAVRLVLGNHDLHLLAVFAGISRNKP 82 (279)
T ss_pred EEEEEcccCCHHHHHHHHHHhCcCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCCeEEEEChhHHHHHHHhcCCCccCc
Confidence 48899999999999999999999888899999999999999999999999998877889999999999998877555555
Q ss_pred hchHHHhhCCcChHHHHHHHhcCCceEEeC--CEEEEecccccccchHHHHHHhHHHHHHhccccHHHHHHHhcCCCCCC
Q psy2887 710 LDTFDDILDAPDKKKLVSWLRTQPLAIYYK--KYLMIHAGVAKQWTAQQTIKLSHQVEKILRTSYWKNLFFKLYNHNSIN 787 (899)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~l~~lp~~~~~~--~~~~vHAg~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 787 (899)
.+++..++.+++.+++++||+++|+++..+ ++++||||++|.|+..++..++++++..|+++.|..|+..||++.|..
T Consensus 83 ~d~l~~~l~a~~~~ell~wLr~lPl~i~~~~~~~~lVHAGi~P~w~l~~a~~~a~eve~~L~~~~~~~fl~~mygn~p~~ 162 (279)
T TIGR00668 83 KDRLDPLLEAPDADELLNWLRRQPLLQHDEEKKLVMAHAGITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMPNR 162 (279)
T ss_pred hHHHHHHHHccCHHHHHHHHHcCCcEEEeCCCCEEEEecCCCCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHhhCCCCcc
Confidence 678888899999999999999999998754 599999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccchhhHHHHHhhhccccccCCCCccccccccCCCCCCCCCCCCCccCCCCCCCCceEEEccCCCC-Cccc
Q psy2887 788 WDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRKTIDITVLFGHWSTL-GLIM 866 (899)
Q Consensus 788 w~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~vv~GH~~~~-~~~~ 866 (899)
|++++ .+++|+|+++|+|||||||+++|+++|..|+.+.. .|..+.|||+++++.....+||||||++. |...
T Consensus 163 W~~~l-----~g~~r~r~i~n~~TRmR~c~~~g~ld~~~k~~~~~-~p~~~~PWf~~~~~~~~~~~ivfGHWaaL~g~~~ 236 (279)
T TIGR00668 163 WSPEL-----QGLARLRFIINAFTRMRFCFPNGQLDMYSKESPED-APAPLKPWFAIPGPVYEEYSIAFGHWASLEGEGT 236 (279)
T ss_pred CCCCC-----chHHHHHHHHHHHhhheeeCCCCCCcccccCCccc-CCCCCCCcccCCCccCCCCcEEEeehhhccCCCC
Confidence 99987 89999999999999999999999999999998854 47889999999999888899999999998 9999
Q ss_pred CCCeEEcccccccCCeeEEEEecCCceEEecc
Q psy2887 867 KPNIICLDTGCVWGNKLTALCLEDRSIIQVNN 898 (899)
Q Consensus 867 ~~~~~~iDtG~v~gg~Lta~~~~~~~~~~v~~ 898 (899)
.++.++|||||||||+|||+++++++.++|++
T Consensus 237 ~~~~~~lDtGCvWGg~Lta~~l~~~~~~~~~~ 268 (279)
T TIGR00668 237 PEGIYALDTGCCWGGRLTCLRWEDKQYFTQPS 268 (279)
T ss_pred CCCeEEcccccccCcceEEEEecCCCEEEEEc
Confidence 99999999999999999999999999999986
No 10
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=100.00 E-value=4.2e-52 Score=426.52 Aligned_cols=253 Identities=47% Similarity=0.867 Sum_probs=233.5
Q ss_pred cccccccccHHHHHHHHHHhhccCCccceeeccccCCCCceEehhHHHHHhcCCccEEEccCChHhHHhHhhhcccCchh
Q psy2887 631 YGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVLININKKSKL 710 (899)
Q Consensus 631 ~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~~~~l~~~~~~~~~v~GNHe~~~l~~~~~~~~~~~~ 710 (899)
|.+||||||+++|+++|++++|.+..|.+|++||+|||||+|.+|+++++++..++.+|+||||.+++.+..+.......
T Consensus 2 yvIGDIHG~~~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~s~evl~~l~~l~~~v~~VlGNHD~~ll~~~~g~~~~~~~ 81 (257)
T cd07422 2 YAIGDIQGCYDELQRLLEKINFDPAKDRLWLVGDLVNRGPDSLETLRFVKSLGDSAKTVLGNHDLHLLAVAAGIKKPKKK 81 (257)
T ss_pred EEEECCCCCHHHHHHHHHhcCCCCCCCEEEEecCcCCCCcCHHHHHHHHHhcCCCeEEEcCCchHHHHHHhcCccccccH
Confidence 68999999999999999999998888999999999999999999999999987789999999999999877665444556
Q ss_pred chHHHhhCCcChHHHHHHHhcCCceEEeC--CEEEEecccccccchHHHHHHhHHHHHHhccccHHHHHHHhcCCCCCCC
Q psy2887 711 DTFDDILDAPDKKKLVSWLRTQPLAIYYK--KYLMIHAGVAKQWTAQQTIKLSHQVEKILRTSYWKNLFFKLYNHNSINW 788 (899)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~l~~lp~~~~~~--~~~~vHAg~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w 788 (899)
+++.+++.+++.+++++||+++|+++..+ ++++||||++|.|+..+...++++++..|++..|..++..+|++.|..|
T Consensus 82 ~t~~~~l~~~~~~~~~~wLr~lPl~~~~~~~~~l~vHAGi~p~w~~~~~~~~a~eve~~l~~~~~~~~~~~my~~~p~~W 161 (257)
T cd07422 82 DTLDDILNAPDRDELLDWLRHQPLLHRDPELGILMVHAGIPPQWSIEQALKLAREVEAALRGPNYREFLKNMYGNEPDRW 161 (257)
T ss_pred hHHHHHHhccchHHHHHHHHhCCCEEEECCccEEEEccCCCCCCCHHHHHHHHHHHHHHhcCCcHHHHHHHhhCCCCccc
Confidence 78888888888899999999999999987 7999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccchhhHHHHHhhhccccccCCCCccccccccCCCCCCCCCCCCCccCCCCCCCCceEEEccCCCCC-cccC
Q psy2887 789 DNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRKTIDITVLFGHWSTLG-LIMK 867 (899)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~vv~GH~~~~~-~~~~ 867 (899)
++++ .+.+|.|+++|+|||||||+++|+++|.+++.+. ..|+.+.|||++|++.....+||||||++.+ ....
T Consensus 162 ~~~l-----~g~~r~r~~~n~~trmR~~~~~g~l~~~~k~~~~-~~~~~~~pWf~~~~~~~~~~~i~fGHwa~l~~~~~~ 235 (257)
T cd07422 162 SDDL-----TGIDRLRYIVNAFTRMRFCTPDGRLDFSSKGAPE-DAPKGLKPWFELPNRKTDDYTIVFGHWAALGGKTRP 235 (257)
T ss_pred Cccc-----CccHHHHHHHHHhhceeeecCCCCEeecccCCcc-cCCCCCCCceeCCCccCCCCcEEEeecccccCccCC
Confidence 9886 8999999999999999999999999999998884 4478899999999998888999999999994 5556
Q ss_pred CCeEEcccccccCCeeEEEEec
Q psy2887 868 PNIICLDTGCVWGNKLTALCLE 889 (899)
Q Consensus 868 ~~~~~iDtG~v~gg~Lta~~~~ 889 (899)
+|+++|||||||||+|||++++
T Consensus 236 ~~~~~lDtGcvwG~~lta~~~~ 257 (257)
T cd07422 236 NNIIALDTGCVWGGKLTALRLE 257 (257)
T ss_pred CCeEEeccccccCCeeeEEEeC
Confidence 6799999999999999999985
No 11
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=100.00 E-value=1e-51 Score=428.74 Aligned_cols=263 Identities=43% Similarity=0.832 Sum_probs=243.2
Q ss_pred ccccccccccHHHHHHHHHHhhccCCccceeeccccCCCCceEehhHHHHHhcCCccEEEccCChHhHHhHhhhcccCch
Q psy2887 630 IYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVLININKKSK 709 (899)
Q Consensus 630 ~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~~~~l~~~~~~~~~v~GNHe~~~l~~~~~~~~~~~ 709 (899)
.+.+||||||+++|++++++++|++..|.+|++||+|||||.|.+|+++++++..++.+|+||||.+++.+..+......
T Consensus 3 ~~vIGDIHG~~~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~s~~vl~~l~~l~~~~~~VlGNHD~~ll~~~~g~~~~~~ 82 (275)
T PRK00166 3 TYAIGDIQGCYDELQRLLEKIDFDPAKDTLWLVGDLVNRGPDSLEVLRFVKSLGDSAVTVLGNHDLHLLAVAAGIKRNKK 82 (275)
T ss_pred EEEEEccCCCHHHHHHHHHhcCCCCCCCEEEEeCCccCCCcCHHHHHHHHHhcCCCeEEEecChhHHHHHhhcCCccccc
Confidence 47899999999999999999999878899999999999999999999999998777999999999999988766444445
Q ss_pred hchHHHhhCCcChHHHHHHHhcCCceEE--eCCEEEEecccccccchHHHHHHhHHHHHHhccccHHHHHHHhcCCCCCC
Q psy2887 710 LDTFDDILDAPDKKKLVSWLRTQPLAIY--YKKYLMIHAGVAKQWTAQQTIKLSHQVEKILRTSYWKNLFFKLYNHNSIN 787 (899)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~l~~lp~~~~--~~~~~~vHAg~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 787 (899)
.+++.+++..+..+++++||+++|++++ .++++|||||++|.|+..+...++++++..|++..|..++..+|++.|..
T Consensus 83 ~~~l~~~l~~~~~~~~~~~L~~lPl~~~~~~~~~l~vHAGi~p~~~~~~~~~~a~eve~~l~~~~~~~~~~~my~~~p~~ 162 (275)
T PRK00166 83 KDTLDPILEAPDRDELLDWLRHQPLLHVDEELGLVMVHAGIPPQWDLATALALAREVEAVLRSDDYRDFLANMYGNEPDR 162 (275)
T ss_pred hhHHHHHHccccHHHHHHHHHCCCcEEEECCCCEEEEccCCCCCCCHHHHHHHHHHHHHHhcCCcHHHHHHHhcCCCcCc
Confidence 5677788877788899999999999999 56899999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccchhhHHHHHhhhccccccCCCCccccccccCCCCCCCCCCCCCccCCCCCCCCceEEEccCCCC-Cccc
Q psy2887 788 WDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRKTIDITVLFGHWSTL-GLIM 866 (899)
Q Consensus 788 w~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~vv~GH~~~~-~~~~ 866 (899)
|+.++ .+.+|.|+++|++||||||+++|.++|.+++.+. ..|+.+.|||++|++.....+|||||||+. |...
T Consensus 163 W~~~l-----~~~~r~r~~~n~~trmR~~~~~g~l~~~~k~~~~-~~~~~~~pWf~~~~~~~~~~~i~fGHwa~l~G~~~ 236 (275)
T PRK00166 163 WSPDL-----TGLERLRYIINAFTRMRFCTPDGRLDFKCKGPPD-EAPAGLKPWFEVPGRKTRDYTIVFGHWAALEGLTT 236 (275)
T ss_pred cCccc-----CchHHHHHHHHHHhhhhcccCCCceeecccCCcc-cCCcCCCCCccCcCccCCCCeEEEecCcccCCccC
Confidence 99886 8999999999999999999999999999999775 447799999999999888889999999998 9999
Q ss_pred CCCeEEcccccccCCeeEEEEecCCceEEecc
Q psy2887 867 KPNIICLDTGCVWGNKLTALCLEDRSIIQVNN 898 (899)
Q Consensus 867 ~~~~~~iDtG~v~gg~Lta~~~~~~~~~~v~~ 898 (899)
.+|+++|||||||||+|||+++++++++||++
T Consensus 237 ~~~~~~LDtGcvwgg~Lta~~l~~~~~~~~~~ 268 (275)
T PRK00166 237 PPNIIALDTGCVWGGKLTALRLEDKQIFQVPC 268 (275)
T ss_pred CCCeEEeecccccCCeEEEEEeCCCcEEEEeC
Confidence 99999999999999999999999999999976
No 12
>KOG0733|consensus
Probab=100.00 E-value=7e-50 Score=426.95 Aligned_cols=426 Identities=20% Similarity=0.262 Sum_probs=303.6
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
+.++++||+||||||||.||+++|+++ +.+++.+....+.+| +.|++|++++++|++|.. ..|||+|
T Consensus 221 ~PprGvLlHGPPGCGKT~lA~AiAgel----------~vPf~~isApeivSG--vSGESEkkiRelF~~A~~-~aPcivF 287 (802)
T KOG0733|consen 221 RPPRGVLLHGPPGCGKTSLANAIAGEL----------GVPFLSISAPEIVSG--VSGESEKKIRELFDQAKS-NAPCIVF 287 (802)
T ss_pred CCCCceeeeCCCCccHHHHHHHHhhhc----------CCceEeecchhhhcc--cCcccHHHHHHHHHHHhc-cCCeEEE
Confidence 567799999999999999999999999 999999999999954 669999999999999985 4599999
Q ss_pred EccccccccCCCCCch---hhHHHhhhhhhc--------CCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCC
Q psy2887 91 IDELHTMIGTGKVEGS---IDAGNMLKPELS--------RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPD 156 (899)
Q Consensus 91 iDEi~~l~~~~~~~~~---~~~~~~l~~~l~--------~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~ 156 (899)
|||||.+.+++...+. +.+...|+..|+ ...|+||+|||+++ .+||+|+| ||+. |.+..|+
T Consensus 288 iDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPD-----slDpaLRRaGRFdrEI~l~vP~ 362 (802)
T KOG0733|consen 288 IDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPD-----SLDPALRRAGRFDREICLGVPS 362 (802)
T ss_pred eecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCc-----ccCHHHhccccccceeeecCCc
Confidence 9999999998865321 224445555552 24699999999999 99999999 9997 9999999
Q ss_pred HHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhhhhhcCChhHHHHHHHHHHHH
Q psy2887 157 IEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQL 236 (899)
Q Consensus 157 ~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~~~~~~~~~~l~~~~~~~~~~ 236 (899)
..+|.+||+.+++.+....++ .+..+++++.+|++ +++..|+..|+..+-.+... +.
T Consensus 363 e~aR~~IL~~~~~~lrl~g~~-----d~~qlA~lTPGfVG-----ADL~AL~~~Aa~vAikR~ld-------------~~ 419 (802)
T KOG0733|consen 363 ETAREEILRIICRGLRLSGDF-----DFKQLAKLTPGFVG-----ADLMALCREAAFVAIKRILD-------------QS 419 (802)
T ss_pred hHHHHHHHHHHHhhCCCCCCc-----CHHHHHhcCCCccc-----hhHHHHHHHHHHHHHHHHhh-------------cc
Confidence 999999999999876544333 35788999999887 78888888887655422110 00
Q ss_pred HHHHHHHHhhcchhhHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcc
Q psy2887 237 KIEHEAIKREYDESSKKRLLLIKKEIN---------KLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKS 307 (899)
Q Consensus 237 ~~~~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (899)
+.-........+..+ ...+..++-+. ++.+-+.....+|. ...+.
T Consensus 420 ~~p~~~~~~~ed~~~-~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~--------------------d~~S~----- 473 (802)
T KOG0733|consen 420 SSPLTKVPISEDSSN-KDAEEDQSSIKITSNAERPLELDRVVQDAILNNP--------------------DPLSK----- 473 (802)
T ss_pred cCccccCCccccccC-CCccchhhhhhcCCcccccccHHHHHHHHHHhCC--------------------CCcCh-----
Confidence 000000000000000 11111111111 01000000000000 00000
Q ss_pred chHhhhhhhhcchHHHHHHHHHhhhhcccCCCccccccccccCcChHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHhh
Q psy2887 308 DWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLC 387 (899)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 387 (899)
+.-......+.+++..+...|++.+. +.....+.|+|+||.
T Consensus 474 ---E~~~~L~i~~eDF~~Al~~iQPSakR------EGF~tVPdVtW~dIG------------------------------ 514 (802)
T KOG0733|consen 474 ---ELLEGLSIKFEDFEEALSKIQPSAKR------EGFATVPDVTWDDIG------------------------------ 514 (802)
T ss_pred ---HHhccceecHHHHHHHHHhcCcchhc------ccceecCCCChhhcc------------------------------
Confidence 00011123455667777777776555 556667778876654
Q ss_pred ccCCChHHHHHHHHHHHHH--------hhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRR--------SRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 459 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~--------~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 459 (899)
+++++..++..++.+ .+.|+..|. .+||+||||||||.|||++|++. +.+|+.+.++++.+
T Consensus 515 ----aL~~vR~eL~~aI~~PiK~pd~~k~lGi~~Ps----GvLL~GPPGCGKTLlAKAVANEa---g~NFisVKGPELlN 583 (802)
T KOG0733|consen 515 ----ALEEVRLELNMAILAPIKRPDLFKALGIDAPS----GVLLCGPPGCGKTLLAKAVANEA---GANFISVKGPELLN 583 (802)
T ss_pred ----cHHHHHHHHHHHHhhhccCHHHHHHhCCCCCC----ceEEeCCCCccHHHHHHHHhhhc---cCceEeecCHHHHH
Confidence 444455555555422 234555444 49999999999999999999999 99999999999998
Q ss_pred ccchhhccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccCH-----------HHHHHHHHhhcCCceecCCCce
Q psy2887 460 KHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS-----------DVFNILLQILDDGRLTDNRGRT 526 (899)
Q Consensus 460 ~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~-----------~~~~~Ll~~le~g~~~~~~g~~ 526 (899)
+ |+|+++. +.+|..++.+.+|||||||+|.+.| .+.|+||..||...
T Consensus 584 k------------YVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~-------- 643 (802)
T KOG0733|consen 584 K------------YVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLE-------- 643 (802)
T ss_pred H------------HhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccc--------
Confidence 7 9999997 8899999999999999999998876 58999999999732
Q ss_pred EecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHh--hccCeEEEecCCCHHHHHHHHHHHH
Q psy2887 527 INFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQL 598 (899)
Q Consensus 527 ~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~~~~~~i~~~~l 598 (899)
...++.||.+||.+.- ++|.++ +|||.++.+..++.+|..+|++...
T Consensus 644 -~R~gV~viaATNRPDi------------------------IDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~t 692 (802)
T KOG0733|consen 644 -ERRGVYVIAATNRPDI------------------------IDPAILRPGRLDKLLYVGLPNAEERVAILKTIT 692 (802)
T ss_pred -cccceEEEeecCCCcc------------------------cchhhcCCCccCceeeecCCCHHHHHHHHHHHh
Confidence 3467788999997543 456666 8999999999999999999987666
No 13
>KOG0730|consensus
Probab=100.00 E-value=4.6e-43 Score=381.80 Aligned_cols=399 Identities=23% Similarity=0.337 Sum_probs=300.0
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
+.+.++|+|||||||||.+++++|++. +..++.++...++ +++.|++++.++..|+++.....|+++|
T Consensus 216 ~~prg~Ll~gppg~Gkt~l~~aVa~e~----------~a~~~~i~~peli--~k~~gEte~~LR~~f~~a~k~~~psii~ 283 (693)
T KOG0730|consen 216 KPPRGLLLYGPPGTGKTFLVRAVANEY----------GAFLFLINGPELI--SKFPGETESNLRKAFAEALKFQVPSIIF 283 (693)
T ss_pred CCCCCccccCCCCCChHHHHHHHHHHh----------CceeEecccHHHH--HhcccchHHHHHHHHHHHhccCCCeeEe
Confidence 567799999999999999999999998 8899999999998 7789999999999999998666699999
Q ss_pred EccccccccCCCCCch--hhHHHhhhhhhc----CCceEEEEecChhHHHHhhhcCHHHHh-cccc-ccccCCCHHHHHH
Q psy2887 91 IDELHTMIGTGKVEGS--IDAGNMLKPELS----RGELHCIGATTLNEYRQYIEKDAAFER-RFQK-ILVEEPDIEETIS 162 (899)
Q Consensus 91 iDEi~~l~~~~~~~~~--~~~~~~l~~~l~----~~~v~vI~at~~~~~~~~~~ld~al~~-Rf~~-i~l~~p~~~e~~~ 162 (899)
|||++.+++++..... ..+...|+.+++ .++++||++||++. .+|++++| ||+. +.+..|+..+|.+
T Consensus 284 IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~-----sld~alRRgRfd~ev~IgiP~~~~Rld 358 (693)
T KOG0730|consen 284 IDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPD-----SLDPALRRGRFDREVEIGIPGSDGRLD 358 (693)
T ss_pred HHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCcc-----ccChhhhcCCCcceeeecCCCchhHHH
Confidence 9999999997654332 334445555553 57899999999999 99999998 9996 9999999999999
Q ss_pred HHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHHHHH
Q psy2887 163 ILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEA 242 (899)
Q Consensus 163 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 242 (899)
|++.+.+.++ .. ++..+..++..+++|.+ +++..++..|......+
T Consensus 359 Il~~l~k~~~----~~-~~~~l~~iA~~thGyvG-----aDL~~l~~ea~~~~~r~------------------------ 404 (693)
T KOG0730|consen 359 ILRVLTKKMN----LL-SDVDLEDIAVSTHGYVG-----ADLAALCREASLQATRR------------------------ 404 (693)
T ss_pred HHHHHHHhcC----Cc-chhhHHHHHHHccchhH-----HHHHHHHHHHHHHHhhh------------------------
Confidence 9999888744 22 56788899999999887 56666666555332210
Q ss_pred HHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccchHhhhhhhhcchHH
Q psy2887 243 IKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNK 322 (899)
Q Consensus 243 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (899)
.+. .
T Consensus 405 ------------------~~~-------------------------------~--------------------------- 408 (693)
T KOG0730|consen 405 ------------------TLE-------------------------------I--------------------------- 408 (693)
T ss_pred ------------------hHH-------------------------------H---------------------------
Confidence 000 0
Q ss_pred HHHHHHHhhhhcccCCCccccccccccCcChHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHhhccCCChHHHHHHHHH
Q psy2887 323 LERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSN 402 (899)
Q Consensus 323 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~v~gq~~~~~~l~~ 402 (899)
+...+...+++.+. +..+..+.++| ++|.|++++++.+.+
T Consensus 409 ~~~A~~~i~psa~R------e~~ve~p~v~W----------------------------------~dIGGlE~lK~elq~ 448 (693)
T KOG0730|consen 409 FQEALMGIRPSALR------EILVEMPNVSW----------------------------------DDIGGLEELKRELQQ 448 (693)
T ss_pred HHHHHhcCCchhhh------heeccCCCCCh----------------------------------hhccCHHHHHHHHHH
Confidence 00000000000000 11122344454 344467777777776
Q ss_pred HHHH--------hhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcc
Q psy2887 403 AIRR--------SRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYI 474 (899)
Q Consensus 403 ~i~~--------~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 474 (899)
++.. .+.|+.+|+ .+|||||||||||++||++|++. +.+|+.+.++++.++ |+
T Consensus 449 ~V~~p~~~pe~F~r~Gi~ppk----GVLlyGPPGC~KT~lAkalAne~---~~nFlsvkgpEL~sk------------~v 509 (693)
T KOG0730|consen 449 AVEWPLKHPEKFARFGISPPK----GVLLYGPPGCGKTLLAKALANEA---GMNFLSVKGPELFSK------------YV 509 (693)
T ss_pred HHhhhhhchHHHHHhcCCCCc----eEEEECCCCcchHHHHHHHhhhh---cCCeeeccCHHHHHH------------hc
Confidence 6633 345665554 49999999999999999999999 999999999999887 89
Q ss_pred ccccc--chhhHHHHhCCCEEEEEccccccC-----------HHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCC
Q psy2887 475 GYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLG 541 (899)
Q Consensus 475 g~~~~--~~l~~~~~~~~~~vl~lDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~ 541 (899)
|++|. +.+|..++++.++||||||||.+. ..+++.||+.|+... ..++++||++||.+
T Consensus 510 GeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e---------~~k~V~ViAATNRp 580 (693)
T KOG0730|consen 510 GESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLE---------ALKNVLVIAATNRP 580 (693)
T ss_pred CchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccc---------ccCcEEEEeccCCh
Confidence 98887 889999999999999999999664 368999999999632 23688999999976
Q ss_pred hhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhh--ccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHH-H
Q psy2887 542 SDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKA-A 618 (899)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~-~ 618 (899)
.. ++++|++ |||.+|++++++.+...+|++.++++ ..++++ -
T Consensus 581 d~------------------------ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk-----------mp~~~~vd 625 (693)
T KOG0730|consen 581 DM------------------------IDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK-----------MPFSEDVD 625 (693)
T ss_pred hh------------------------cCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc-----------CCCCcccc
Confidence 54 6778886 99999999999999999998888744 334444 3
Q ss_pred HHHHHhcccCcccccccccccHH
Q psy2887 619 LKKISNIGFDLIYGARDVHGCKK 641 (899)
Q Consensus 619 ~~~L~~~~~~~~~~~~di~~~~~ 641 (899)
++.|++ ....|.-.||.+.+.
T Consensus 626 l~~La~--~T~g~SGAel~~lCq 646 (693)
T KOG0730|consen 626 LEELAQ--ATEGYSGAEIVAVCQ 646 (693)
T ss_pred HHHHHH--HhccCChHHHHHHHH
Confidence 455555 223345566666533
No 14
>KOG0736|consensus
Probab=100.00 E-value=5.2e-35 Score=321.16 Aligned_cols=380 Identities=20% Similarity=0.277 Sum_probs=260.2
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEEc
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFID 92 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~iD 92 (899)
...+||+|+||||||++++++|+++ +.++++++|..+.+. ..+.++.++...|..++.. .|+|||+-
T Consensus 431 ~~~vLLhG~~g~GK~t~V~~vas~l----------g~h~~evdc~el~~~--s~~~~etkl~~~f~~a~~~-~pavifl~ 497 (953)
T KOG0736|consen 431 NPSVLLHGPPGSGKTTVVRAVASEL----------GLHLLEVDCYELVAE--SASHTETKLQAIFSRARRC-SPAVLFLR 497 (953)
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHh----------CCceEeccHHHHhhc--ccchhHHHHHHHHHHHhhc-CceEEEEe
Confidence 3468999999999999999999999 999999999999844 4578888999999999854 69999999
Q ss_pred cccccccCCCCCchhhHHHhhhhhhc-------CCceEEEEecChhHHHHhhhcCHHHHhcccc-ccccCCCHHHHHHHH
Q psy2887 93 ELHTMIGTGKVEGSIDAGNMLKPELS-------RGELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISIL 164 (899)
Q Consensus 93 Ei~~l~~~~~~~~~~~~~~~l~~~l~-------~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~-i~l~~p~~~e~~~il 164 (899)
++|.+.-+.+......+...+...++ .+.+++|++|+..+ .+++.+++.|.. |.++.|+.+||.+||
T Consensus 498 ~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~-----~lp~~i~~~f~~ei~~~~lse~qRl~iL 572 (953)
T KOG0736|consen 498 NLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIE-----DLPADIQSLFLHEIEVPALSEEQRLEIL 572 (953)
T ss_pred ccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccc-----cCCHHHHHhhhhhccCCCCCHHHHHHHH
Confidence 99999865544333344444444443 45789999999998 899999998864 999999999999999
Q ss_pred HhhhhhhhcccCCCCCH-HHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHHHHHH
Q psy2887 165 RGLQKKYEVHHGVEITD-PAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAI 243 (899)
Q Consensus 165 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 243 (899)
+.++.... +++ ...+.++..+.++.. .+...++...-...
T Consensus 573 q~y~~~~~------~n~~v~~k~~a~~t~gfs~-----~~L~~l~~~~s~~~---------------------------- 613 (953)
T KOG0736|consen 573 QWYLNHLP------LNQDVNLKQLARKTSGFSF-----GDLEALVAHSSLAA---------------------------- 613 (953)
T ss_pred HHHHhccc------cchHHHHHHHHHhcCCCCH-----HHHHHHhcCchHHH----------------------------
Confidence 99887643 332 234455555555432 22222222110000
Q ss_pred HhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccchHhhhhhhhcchHHH
Q psy2887 244 KREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKL 323 (899)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (899)
..++++-. -...++... +..|
T Consensus 614 --------~~~i~~~~-l~g~~~~~~---~~~~----------------------------------------------- 634 (953)
T KOG0736|consen 614 --------KTRIKNKG-LAGGLQEED---EGEL----------------------------------------------- 634 (953)
T ss_pred --------HHHHHhhc-ccccchhcc---cccc-----------------------------------------------
Confidence 00000000 000000000 0000
Q ss_pred HHHHHHhhhhcccCCCccccccccccCcChHHHHHHH-------HHHhCCCCcccchHHHHHHHHHHHHhhccCCChHHH
Q psy2887 324 ERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIV-------SRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEA 396 (899)
Q Consensus 324 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~-------~~~~~~~~~~~~~~~~~~l~~l~~~l~~~v~gq~~~ 396 (899)
-+....++.+|+.+.+ +...|.|- +-+.-+.+|.|.+++
T Consensus 635 ---------------------~~~~~~l~~edf~kals~~~~~fs~aiGAPK-------------IPnV~WdDVGGLeev 680 (953)
T KOG0736|consen 635 ---------------------CAAGFLLTEEDFDKALSRLQKEFSDAIGAPK-------------IPNVSWDDVGGLEEV 680 (953)
T ss_pred ---------------------ccccceecHHHHHHHHHHHHHhhhhhcCCCC-------------CCccchhcccCHHHH
Confidence 0001122222222222 22222220 001112456688888
Q ss_pred HHHHHHHHHHh-------hcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCC
Q psy2887 397 ISAVSNAIRRS-------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGA 469 (899)
Q Consensus 397 ~~~l~~~i~~~-------~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~ 469 (899)
+..|...|+.. ..|+ +++..+|||||||||||.+|||+|.++ ..+|+.+.++|+.++
T Consensus 681 K~eIldTIqlPL~hpeLfssgl----rkRSGILLYGPPGTGKTLlAKAVATEc---sL~FlSVKGPELLNM--------- 744 (953)
T KOG0736|consen 681 KTEILDTIQLPLKHPELFSSGL----RKRSGILLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELLNM--------- 744 (953)
T ss_pred HHHHHHHhcCcccChhhhhccc----cccceeEEECCCCCchHHHHHHHHhhc---eeeEEeecCHHHHHH---------
Confidence 88888888651 1222 333469999999999999999999999 899999999999988
Q ss_pred CCCccccccc--chhhHHHHhCCCEEEEEccccccCH-------------HHHHHHHHhhcCCceecCCCceEecCCeEE
Q psy2887 470 PPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS-------------DVFNILLQILDDGRLTDNRGRTINFRNTII 534 (899)
Q Consensus 470 ~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~-------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~i 534 (899)
|+|++|. |.+|+.++.+.||||||||+|+++| ++.+.||..||. +.++ +...++|
T Consensus 745 ---YVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDg--ls~~-----~s~~VFV 814 (953)
T KOG0736|consen 745 ---YVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDG--LSDS-----SSQDVFV 814 (953)
T ss_pred ---HhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhc--ccCC-----CCCceEE
Confidence 9999988 8899999999999999999999987 588999999985 2221 3456778
Q ss_pred EEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHh--hccCeEEEecCCCHHHHHH
Q psy2887 535 VMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILS 592 (899)
Q Consensus 535 I~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~~~~~~ 592 (899)
|.+||.+. .++|.|+ +|||..+++.+...++-+.
T Consensus 815 iGATNRPD------------------------LLDpALLRPGRFDKLvyvG~~~d~esk~ 850 (953)
T KOG0736|consen 815 IGATNRPD------------------------LLDPALLRPGRFDKLVYVGPNEDAESKL 850 (953)
T ss_pred EecCCCcc------------------------ccChhhcCCCccceeEEecCCccHHHHH
Confidence 88888643 2567776 8999999999987655443
No 15
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=3.6e-34 Score=343.69 Aligned_cols=421 Identities=23% Similarity=0.354 Sum_probs=278.0
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
..+.++||+||||||||++++++|+.+ +.+++.++...+. +++.|+.+..++.+|+.+.. ..|+|||
T Consensus 210 ~~~~giLL~GppGtGKT~laraia~~~----------~~~~i~i~~~~i~--~~~~g~~~~~l~~lf~~a~~-~~p~il~ 276 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLAKAVANEA----------GAYFISINGPEIM--SKYYGESEERLREIFKEAEE-NAPSIIF 276 (733)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHh----------CCeEEEEecHHHh--cccccHHHHHHHHHHHHHHh-cCCcEEE
Confidence 345689999999999999999999998 7788888887776 56889999999999999874 4589999
Q ss_pred EccccccccCCCCCch---hhHHHhhhhhh----cCCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCHHHH
Q psy2887 91 IDELHTMIGTGKVEGS---IDAGNMLKPEL----SRGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEET 160 (899)
Q Consensus 91 iDEi~~l~~~~~~~~~---~~~~~~l~~~l----~~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~~e~ 160 (899)
|||+|.+++.+..... ..+.+.|+..+ +++.+++|++||.++ .+|+++++ ||+. +.++.|+.++|
T Consensus 277 iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~-----~ld~al~r~gRfd~~i~i~~P~~~~R 351 (733)
T TIGR01243 277 IDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPD-----ALDPALRRPGRFDREIVIRVPDKRAR 351 (733)
T ss_pred eehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChh-----hcCHHHhCchhccEEEEeCCcCHHHH
Confidence 9999999876543221 23455566655 457899999999998 89999998 9986 99999999999
Q ss_pred HHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHHH
Q psy2887 161 ISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEH 240 (899)
Q Consensus 161 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 240 (899)
.+||+......... .+..+..+++.+.+|.+ .+...++..++..+..+ .+..-
T Consensus 352 ~~Il~~~~~~~~l~-----~d~~l~~la~~t~G~~g-----adl~~l~~~a~~~al~r-------------~~~~~---- 404 (733)
T TIGR01243 352 KEILKVHTRNMPLA-----EDVDLDKLAEVTHGFVG-----ADLAALAKEAAMAALRR-------------FIREG---- 404 (733)
T ss_pred HHHHHHHhcCCCCc-----cccCHHHHHHhCCCCCH-----HHHHHHHHHHHHHHHHH-------------Hhhcc----
Confidence 99999666543211 23346778888877765 44444544444322100 00000
Q ss_pred HHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccchHhhhhhhhcch
Q psy2887 241 EAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGEL 320 (899)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (899)
..+... . .+.
T Consensus 405 -----~~~~~~-----------~------------------------~i~------------------------------ 414 (733)
T TIGR01243 405 -----KINFEA-----------E------------------------EIP------------------------------ 414 (733)
T ss_pred -----cccccc-----------c------------------------ccc------------------------------
Confidence 000000 0 000
Q ss_pred HHHHHHHHHhhhhcccCCCccccccccccCcChHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHhhccCCChHHHHHHH
Q psy2887 321 NKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAV 400 (899)
Q Consensus 321 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~v~gq~~~~~~l 400 (899)
........++.+|+...+.....-. + .....+....-..++.|++.+++.|
T Consensus 415 ----------------------~~~~~~~~v~~~df~~Al~~v~ps~---~----~~~~~~~~~~~~~di~g~~~~k~~l 465 (733)
T TIGR01243 415 ----------------------AEVLKELKVTMKDFMEALKMVEPSA---I----REVLVEVPNVRWSDIGGLEEVKQEL 465 (733)
T ss_pred ----------------------chhcccccccHHHHHHHHhhccccc---c----chhhccccccchhhcccHHHHHHHH
Confidence 0000001122222222211111000 0 0000000111225677899999888
Q ss_pred HHHHHHh--------hcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCC
Q psy2887 401 SNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPG 472 (899)
Q Consensus 401 ~~~i~~~--------~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 472 (899)
.+.+... ..++..| ..+||+||||||||++|+++|..+ +.+|+.++++++.+.
T Consensus 466 ~~~v~~~~~~~~~~~~~g~~~~----~giLL~GppGtGKT~lakalA~e~---~~~fi~v~~~~l~~~------------ 526 (733)
T TIGR01243 466 REAVEWPLKHPEIFEKMGIRPP----KGVLLFGPPGTGKTLLAKAVATES---GANFIAVRGPEILSK------------ 526 (733)
T ss_pred HHHHHhhhhCHHHHHhcCCCCC----ceEEEECCCCCCHHHHHHHHHHhc---CCCEEEEehHHHhhc------------
Confidence 8877532 1232222 359999999999999999999999 899999999887654
Q ss_pred ccccccc--chhhHHHHhCCCEEEEEccccccCH------------HHHHHHHHhhcCCceecCCCceEecCCeEEEEec
Q psy2887 473 YIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS------------DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTS 538 (899)
Q Consensus 473 ~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ts 538 (899)
|+|+++. +.++..++...++||||||||.+.+ .+.+.|+..|+.-. ...+++||+||
T Consensus 527 ~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~---------~~~~v~vI~aT 597 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQ---------ELSNVVVIAAT 597 (733)
T ss_pred ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhccc---------CCCCEEEEEeC
Confidence 7776665 6678888888899999999997742 46788888887411 24678899999
Q ss_pred CCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHh--hccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecH
Q psy2887 539 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISK 616 (899)
Q Consensus 539 n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 616 (899)
|.+.. ++|.++ +|||.++.|++|+.++..+|++.++.+ ..+.- +
T Consensus 598 n~~~~------------------------ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~-------~~~~~---~ 643 (733)
T TIGR01243 598 NRPDI------------------------LDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS-------MPLAE---D 643 (733)
T ss_pred CChhh------------------------CCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC-------CCCCc---c
Confidence 96442 567777 599999999999999999998755522 11111 1
Q ss_pred HHHHHHHhcccCccccccccccc
Q psy2887 617 AALKKISNIGFDLIYGARDVHGC 639 (899)
Q Consensus 617 ~~~~~L~~~~~~~~~~~~di~~~ 639 (899)
.-++.|++ ....|...||...
T Consensus 644 ~~l~~la~--~t~g~sgadi~~~ 664 (733)
T TIGR01243 644 VDLEELAE--MTEGYTGADIEAV 664 (733)
T ss_pred CCHHHHHH--HcCCCCHHHHHHH
Confidence 12445554 2334566777765
No 16
>KOG0735|consensus
Probab=100.00 E-value=3.4e-34 Score=311.57 Aligned_cols=387 Identities=19% Similarity=0.241 Sum_probs=261.0
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
.+.+||||.||+|+|||.|++++++++.... .+.+..++|+.+. .+....+.+.+..+|.++.. .+|+|++
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~------~~hv~~v~Cs~l~--~~~~e~iQk~l~~vfse~~~-~~PSiIv 499 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDL------IAHVEIVSCSTLD--GSSLEKIQKFLNNVFSEALW-YAPSIIV 499 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhcccc------ceEEEEEechhcc--chhHHHHHHHHHHHHHHHHh-hCCcEEE
Confidence 4677999999999999999999999985322 4566677877765 23356677778888888874 5699999
Q ss_pred EccccccccCCCCCchhh--HHHhhh--------hhhcC-CceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCC
Q psy2887 91 IDELHTMIGTGKVEGSID--AGNMLK--------PELSR-GELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPD 156 (899)
Q Consensus 91 iDEi~~l~~~~~~~~~~~--~~~~l~--------~~l~~-~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~ 156 (899)
+|++|.|++....+++++ ..+.+. .+... ..+.+|++.+... .++|-|.+ +|+. +.++.|.
T Consensus 500 LDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~q-----tl~~~L~s~~~Fq~~~~L~ap~ 574 (952)
T KOG0735|consen 500 LDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQ-----TLNPLLVSPLLFQIVIALPAPA 574 (952)
T ss_pred EcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhh-----hcChhhcCccceEEEEecCCcc
Confidence 999999998554444433 222222 22233 4568899888777 78888877 8886 8899999
Q ss_pred HHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhhhhhcCChhHHHHHHHHHHHH
Q psy2887 157 IEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQL 236 (899)
Q Consensus 157 ~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~~~~~~~~~~l~~~~~~~~~~ 236 (899)
..+|.+||+.+.++- ...+....++.++..++||.. .+..-+++.|...+.....+.
T Consensus 575 ~~~R~~IL~~~~s~~----~~~~~~~dLd~ls~~TEGy~~-----~DL~ifVeRai~~a~leris~-------------- 631 (952)
T KOG0735|consen 575 VTRRKEILTTIFSKN----LSDITMDDLDFLSVKTEGYLA-----TDLVIFVERAIHEAFLERISN-------------- 631 (952)
T ss_pred hhHHHHHHHHHHHhh----hhhhhhHHHHHHHHhcCCccc-----hhHHHHHHHHHHHHHHHHhcc--------------
Confidence 999999999988762 234455666667888877755 445445554443221100000
Q ss_pred HHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccchHhhhhhh
Q psy2887 237 KIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLK 316 (899)
Q Consensus 237 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (899)
.
T Consensus 632 ---------~---------------------------------------------------------------------- 632 (952)
T KOG0735|consen 632 ---------G---------------------------------------------------------------------- 632 (952)
T ss_pred ---------C----------------------------------------------------------------------
Confidence 0
Q ss_pred hcchHHHHHHHHHhhhhcccCCCccccccccccCcChHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHhhccCCChHHH
Q psy2887 317 YGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEA 396 (899)
Q Consensus 317 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~v~gq~~~ 396 (899)
.+.++.+++.+.++.........+....... .-..++.|..++
T Consensus 633 -------------------------------~klltke~f~ksL~~F~P~aLR~ik~~k~tg------i~w~digg~~~~ 675 (952)
T KOG0735|consen 633 -------------------------------PKLLTKELFEKSLKDFVPLALRGIKLVKSTG------IRWEDIGGLFEA 675 (952)
T ss_pred -------------------------------cccchHHHHHHHHHhcChHHhhhccccccCC------CCceecccHHHH
Confidence 0011222222222211111100000000000 011456677777
Q ss_pred HHHHHHHHHHhhc----CCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCC
Q psy2887 397 ISAVSNAIRRSRS----GLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPG 472 (899)
Q Consensus 397 ~~~l~~~i~~~~~----~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 472 (899)
++.+.+.+..... .-.-|-+-...+|||||||||||.||.++|... +.+|+.+.++++.++
T Consensus 676 k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~---~~~fisvKGPElL~K------------ 740 (952)
T KOG0735|consen 676 KKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS---NLRFISVKGPELLSK------------ 740 (952)
T ss_pred HHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC---CeeEEEecCHHHHHH------------
Confidence 7777777643211 001122223469999999999999999999998 899999999999887
Q ss_pred ccccccc--chhhHHHHhCCCEEEEEccccccCH-----------HHHHHHHHhhcCCceecCCCceEecCCeEEEEecC
Q psy2887 473 YIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS-----------DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSN 539 (899)
Q Consensus 473 ~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~-----------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn 539 (899)
|+|.++. +.+|..++.+.||||||||+|+++| ++.|.||+.||+-. ....+.|+++|.
T Consensus 741 yIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~E---------gl~GV~i~aaTs 811 (952)
T KOG0735|consen 741 YIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAE---------GLDGVYILAATS 811 (952)
T ss_pred HhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccc---------ccceEEEEEecC
Confidence 8888887 7899999999999999999999987 58999999999622 134444555555
Q ss_pred CChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHh--hccCeEEEecCCCHHHHHHHHHHHH
Q psy2887 540 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQL 598 (899)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~~~~~~i~~~~l 598 (899)
. ++ .++|+|+ +|+|..+..+.+++.+..+|++..-
T Consensus 812 R-pd-----------------------liDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls 848 (952)
T KOG0735|consen 812 R-PD-----------------------LIDPALLRPGRLDKLVYCPLPDEPERLEILQVLS 848 (952)
T ss_pred C-cc-----------------------ccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHh
Confidence 3 33 2566666 8999999999999999999976554
No 17
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=100.00 E-value=2.8e-32 Score=282.77 Aligned_cols=208 Identities=24% Similarity=0.407 Sum_probs=152.0
Q ss_pred ccccccccccHHHHHHHHHHhhcc--------CCccceeeccccCCCCceEehhHHHHHhc--CCccEEEccCChHhHHh
Q psy2887 630 IYGARDVHGCKKSLSILLKKIHKK--------SPEANFIFLGDLINKGPQSLDTLRMVYSM--RNYAKIVLGNHEIHLLD 699 (899)
Q Consensus 630 ~~~~~di~~~~~~l~~~l~~~~~~--------~~~~~li~~GD~~d~g~~~~~~~~~l~~~--~~~~~~v~GNHe~~~l~ 699 (899)
.+.+||||||+++|.++|++++|. +..+++|++||++||||+|.+|+++++++ .+++.+|+||||.|+++
T Consensus 3 ~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~~~~~~~~~l~GNHE~~~l~ 82 (245)
T PRK13625 3 YDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELVEKKAAYYVPGNHCNKLYR 82 (245)
T ss_pred eEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHHhhCCCEEEEeCccHHHHHH
Confidence 367999999999999999999986 35689999999999999999999999886 34789999999999999
Q ss_pred Hhhhcc---cCchhchHHHhhCCc------ChHHHHHHHhcCCceEEe--CCEEEEecccccccchHHHHHHhHHHHHHh
Q psy2887 700 VLININ---KKSKLDTFDDILDAP------DKKKLVSWLRTQPLAIYY--KKYLMIHAGVAKQWTAQQTIKLSHQVEKIL 768 (899)
Q Consensus 700 ~~~~~~---~~~~~~~~~~~~~~~------~~~~~~~~l~~lp~~~~~--~~~~~vHAg~~~~~~~~~~~~~~~~~~~~l 768 (899)
++.+.. ..++..++.++.... ..+.+.+|++++|+++.. ++++|||||++|.+.... . .+....+
T Consensus 83 ~~~~~~~~~~~gg~~tl~~~~~~~~~~~~~~~~~~~~~~~~lPl~~~~~~~~~~~vHAG~~~~~~~~~---~-~~~~~~~ 158 (245)
T PRK13625 83 FFLGRNVTIAHGLETTVAEYEALPSHKQNMIKEKFITLYEQAPLYHILDEGRLVVAHAGIRQDYIGRQ---D-KKVQTFV 158 (245)
T ss_pred HHhCCCccccchhHhHHHHHhccChhhHHHHHHHHHHHHHhCCceEEEeCCCEEEEECCCChHhcccc---h-hhhhhHH
Confidence 886532 233445555543221 246788999999999876 679999999998531100 0 1111111
Q ss_pred ccccHHHHHHHhcCCC-CCCCCcccccccccchhhHHHHHhhhccccccCCCCccccccccCCCCCCCCCCCCCccCCCC
Q psy2887 769 RTSYWKNLFFKLYNHN-SINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNR 847 (899)
Q Consensus 769 ~~~~~~~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~~~~~ 847 (899)
+++.. ...|... .....+|.+.+.
T Consensus 159 -----------l~~~~~~~~~~~~-------------------------------------------~~~~~~~~~~~~- 183 (245)
T PRK13625 159 -----------LYGDITGEKHPDG-------------------------------------------SPVRRDWAKEYK- 183 (245)
T ss_pred -----------hhccccCCcCCCC-------------------------------------------CeeeeccchhcC-
Confidence 01100 0000000 011234554443
Q ss_pred CCCCceEEEccCCCCCcccCCCeEEcccccccCCeeEEEEecCCceEEecc
Q psy2887 848 KTIDITVLFGHWSTLGLIMKPNIICLDTGCVWGNKLTALCLEDRSIIQVNN 898 (899)
Q Consensus 848 ~~~~~~vv~GH~~~~~~~~~~~~~~iDtG~v~gg~Lta~~~~~~~~~~v~~ 898 (899)
+..+|||||||+..+...+|.++|||||++||+|||++++++++++|++
T Consensus 184 --g~~~vV~GHtp~~~~~~~~~~i~IDtGa~~gG~Ltal~l~~~~~~~v~~ 232 (245)
T PRK13625 184 --GTAWIVYGHTPVKEPRFVNHTVNIDTGCVFGGRLTALRYPEMETVSVPS 232 (245)
T ss_pred --CCcEEEECCCCCccceecCCeEEEECcCccCCEEEEEECCCCcEEEEEC
Confidence 3568999999999998889999999999999999999999999999986
No 18
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=99.97 E-value=6.9e-32 Score=275.08 Aligned_cols=194 Identities=27% Similarity=0.442 Sum_probs=139.6
Q ss_pred cccccccccHHHHHHHHHHhhcc-------CCccceeeccccCCCCceEehhHHHHHhcC--CccEEEccCChHhHHhHh
Q psy2887 631 YGARDVHGCKKSLSILLKKIHKK-------SPEANFIFLGDLINKGPQSLDTLRMVYSMR--NYAKIVLGNHEIHLLDVL 701 (899)
Q Consensus 631 ~~~~di~~~~~~l~~~l~~~~~~-------~~~~~li~~GD~~d~g~~~~~~~~~l~~~~--~~~~~v~GNHe~~~l~~~ 701 (899)
+.+||||||+++|.++|++++|+ ++.+++||+||||||||+|.+|+++++++. .++.+|+||||.|+++++
T Consensus 2 ~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~vl~~l~~l~~~~~~~~l~GNHE~~ll~~~ 81 (222)
T cd07413 2 DFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVDAGHALAVMGNHEFNAIAWH 81 (222)
T ss_pred EEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHHHHHHHHHhhcCCCEEEEEccCcHHHHHhh
Confidence 57899999999999999999886 256899999999999999999999999874 468999999999999887
Q ss_pred hhccc-------Cc------hhchHHHhh-CCcChHHHHHHHhcCCceEEeCCEEEEecccccccchHHHHHHhHHHHHH
Q psy2887 702 ININK-------KS------KLDTFDDIL-DAPDKKKLVSWLRTQPLAIYYKKYLMIHAGVAKQWTAQQTIKLSHQVEKI 767 (899)
Q Consensus 702 ~~~~~-------~~------~~~~~~~~~-~~~~~~~~~~~l~~lp~~~~~~~~~~vHAg~~~~~~~~~~~~~~~~~~~~ 767 (899)
.+... .+ ...++..+. .....+.+++||+++|++++.++++|||||+.+.+.
T Consensus 82 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~lP~~~~~~~~~~VHAg~~~~l~-------------- 147 (222)
T cd07413 82 TKDPSGGEWLRAHSKKNLRQHQAFLEQFREHSEEHKDWLEWFKTLPLFLDLGGVRVVHACWDETLL-------------- 147 (222)
T ss_pred hCCcccchhhhcCCCcccccHHHHHHHHhccchhHHHHHHHHhcCCcEEEECCEEEEECCcCHhhc--------------
Confidence 54210 11 112333322 223457899999999999999999999999864211
Q ss_pred hccccHHHHHHHhcCCCCCCCCcccccccccchhhHHHHHhhhccccccCCCCccccccccCCCCCCCCCCCCCccCCCC
Q psy2887 768 LRTSYWKNLFFKLYNHNSINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNR 847 (899)
Q Consensus 768 l~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~~~~~ 847 (899)
|.+.... .....|++..+. .......||+.
T Consensus 148 --------------------~~~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~~~---- 177 (222)
T cd07413 148 --------------------KGPEIAL---------------PEGHSFVDKDGI-----------VRDNIRVKWWG---- 177 (222)
T ss_pred --------------------cCCCcCC---------------CCCceeecCCCc-----------cccccchhhcC----
Confidence 1111000 000012211110 00112234542
Q ss_pred CCCCceEEEccCCCCC--cccCCCeEEcccccccCCeeEEEEecCCc
Q psy2887 848 KTIDITVLFGHWSTLG--LIMKPNIICLDTGCVWGNKLTALCLEDRS 892 (899)
Q Consensus 848 ~~~~~~vv~GH~~~~~--~~~~~~~~~iDtG~v~gg~Lta~~~~~~~ 892 (899)
..|||||||+++ +...+|++||||||++||+|||++++++.
T Consensus 178 ----~~Vv~GHt~~~~~~~~~~~~~i~iDTGA~~~G~Lta~~~~~~~ 220 (222)
T cd07413 178 ----KPVFVGHYWLNGEPAPLNPNVACLDYSAAKGGKLVAYRWDGED 220 (222)
T ss_pred ----CCEEEecCCCCCCCccccCCEEEEecccccCCeeEEEEcCCcc
Confidence 569999999965 78889999999999999999999998653
No 19
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-29 Score=278.50 Aligned_cols=408 Identities=22% Similarity=0.338 Sum_probs=309.9
Q ss_pred HHHHHHHHhhhhhhhc--ccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhhhhhcCChhHH------HHH
Q psy2887 158 EETISILRGLQKKYEV--HHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIM------DKL 229 (899)
Q Consensus 158 ~e~~~il~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~~~~~~~~~~l------~~~ 229 (899)
.+...+.+.+...++. ..+-.+..+.+..+..+. ..-.+.|.+++.........++.+ .++
T Consensus 126 ~~~~al~~~i~~~~~~~~~l~~~~~~e~l~~~~~i~-----------~~~klad~iaa~l~~~~~~kQ~iLe~~~v~~Rl 194 (782)
T COG0466 126 REIEALVRSILSEFEEYAKLNKKIPPEELQSLNSID-----------DPGKLADTIAAHLPLKLEEKQEILETLDVKERL 194 (782)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHhccc-----------chHHHHHHHHHhCCCCHHHHHHHHHhCCHHHHH
Confidence 3344555555544432 112236677776554332 233677888877776655555555 588
Q ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccch
Q psy2887 230 ERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDW 309 (899)
Q Consensus 230 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (899)
+..+..+..+++.++.+..+ ..++++++++.|++|...++...+++++......- .+++.++...+....+..
T Consensus 195 ek~l~~l~~ei~~~~~ek~I-----~~kVk~~meK~QREyyL~EQlKaIqkELG~~~d~~-~e~~~~~~kie~~~~p~e- 267 (782)
T COG0466 195 EKLLDLLEKEIDLLQLEKRI-----RKKVKEQMEKSQREYYLREQLKAIQKELGEDDDDK-DEVEELREKIEKLKLPKE- 267 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccch-hHHHHHHHHHhhcCCCHH-
Confidence 88899999999888877543 56789999999999999999999999876543111 334444444443333211
Q ss_pred HhhhhhhhcchHHHHHHHHHhhhhcccCCCccccccccccCcChHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHhhcc
Q psy2887 310 QTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKR 389 (899)
Q Consensus 310 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 389 (899)
--...++++++++. |+++|+++.++|+|++| ++.+||.+.+. ++.++.+.++.|+++
T Consensus 268 ---------vk~k~~~El~kL~~----m~~~SaE~~ViRnYlDw---------ll~lPW~~~sk-~~~Dl~~a~~iLd~d 324 (782)
T COG0466 268 ---------AKEKAEKELKKLET----MSPMSAEATVIRNYLDW---------LLDLPWGKRSK-DKLDLKKAEKILDKD 324 (782)
T ss_pred ---------HHHHHHHHHHHHhc----CCCCCchHHHHHHHHHH---------HHhCCCccccc-hhhhHHHHHHHhccc
Confidence 12336677777776 67888999999999996 89999998766 478899999999999
Q ss_pred CCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCC
Q psy2887 390 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGA 469 (899)
Q Consensus 390 v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~ 469 (899)
-.|.++++++|.+.+...... ..-++| .++|+||||+|||+|++.||+++ +.+|+++....+.+. +.+-|+
T Consensus 325 HYGLekVKeRIlEyLAV~~l~-~~~kGp--ILcLVGPPGVGKTSLgkSIA~al---~RkfvR~sLGGvrDE---AEIRGH 395 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLT-KKLKGP--ILCLVGPPGVGKTSLGKSIAKAL---GRKFVRISLGGVRDE---AEIRGH 395 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHh-ccCCCc--EEEEECCCCCCchhHHHHHHHHh---CCCEEEEecCccccH---HHhccc
Confidence 999999999999988554422 223344 48999999999999999999999 999999999888664 667799
Q ss_pred CCCcccccccchhhHHHHhC-CCEEEEEccccccCHH----HHHHHHHhhcC---CceecCC-CceEecCCeEEEEecCC
Q psy2887 470 PPGYIGYEEGGYLTEIVRRK-PYSLILLDEIEKANSD----VFNILLQILDD---GRLTDNR-GRTINFRNTIIVMTSNL 540 (899)
Q Consensus 470 ~~~~~g~~~~~~l~~~~~~~-~~~vl~lDEid~~~~~----~~~~Ll~~le~---g~~~~~~-g~~~~~~~~~iI~tsn~ 540 (899)
...|+|.-.++.+...-+.. .+.|++||||||++.+ -.++||.+||. ..|.|.. ....++++++||+|+|.
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANs 475 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANS 475 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCc
Confidence 99999999987776655543 3559999999999875 46899999985 3566655 66789999999999995
Q ss_pred ChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCc---ceeecHH
Q psy2887 541 GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNM---DLKISKA 617 (899)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~---~~~~~~~ 617 (899)
- ..++.+|++|+ .+|.+..|+++|..+|++++| +.+.++.+|+ .+.++++
T Consensus 476 l------------------------~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~L--iPk~~~~~gL~~~el~i~d~ 528 (782)
T COG0466 476 L------------------------DTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHL--IPKQLKEHGLKKGELTITDE 528 (782)
T ss_pred c------------------------ccCChHHhcce-eeeeecCCChHHHHHHHHHhc--chHHHHHcCCCccceeecHH
Confidence 2 34788899999 899999999999999999999 6777777765 5899999
Q ss_pred HHHHHHhcccCcccccccccccHHHH
Q psy2887 618 ALKKISNIGFDLIYGARDVHGCKKSL 643 (899)
Q Consensus 618 ~~~~L~~~~~~~~~~~~di~~~~~~l 643 (899)
|+..+.+ .|.+.-|+|.+.+....+
T Consensus 529 ai~~iI~-~YTREAGVR~LeR~i~ki 553 (782)
T COG0466 529 AIKDIIR-YYTREAGVRNLEREIAKI 553 (782)
T ss_pred HHHHHHH-HHhHhhhhhHHHHHHHHH
Confidence 9999987 799999999999984333
No 20
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=99.96 E-value=5.3e-30 Score=264.91 Aligned_cols=208 Identities=28% Similarity=0.399 Sum_probs=149.1
Q ss_pred cccccccccHHHHHHHHHHhhccC---------CccceeeccccCCCCceEehhHHHHHhc--CCccEEEccCChHhHHh
Q psy2887 631 YGARDVHGCKKSLSILLKKIHKKS---------PEANFIFLGDLINKGPQSLDTLRMVYSM--RNYAKIVLGNHEIHLLD 699 (899)
Q Consensus 631 ~~~~di~~~~~~l~~~l~~~~~~~---------~~~~li~~GD~~d~g~~~~~~~~~l~~~--~~~~~~v~GNHe~~~l~ 699 (899)
..+||||||+++|+++|++++|.. ..+++||+||++||||.|.+|+++++++ +.++.+|+||||.|+++
T Consensus 4 ~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~evl~~l~~l~~~~~~~~v~GNHE~~l~~ 83 (234)
T cd07423 4 DIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVAAGAALCVPGNHDNKLYR 83 (234)
T ss_pred EEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHHHHHHHHHHhhCCcEEEEECCcHHHHHH
Confidence 468999999999999999998863 2579999999999999999999999987 34689999999999999
Q ss_pred Hhhhccc---CchhchHHHhh--CCcChHHHHHHHhcCCceEEe--CCEEEEecccccccchHHHHHHhHHHHHHhcccc
Q psy2887 700 VLININK---KSKLDTFDDIL--DAPDKKKLVSWLRTQPLAIYY--KKYLMIHAGVAKQWTAQQTIKLSHQVEKILRTSY 772 (899)
Q Consensus 700 ~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~l~~lp~~~~~--~~~~~vHAg~~~~~~~~~~~~~~~~~~~~l~~~~ 772 (899)
++.+... .+...++.++. .....+++.+||++||++++. ++++|||||+++.+..... .. ++
T Consensus 84 ~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~~lP~~~~~~~~~~~~vHag~~~~~~~~~~----~~----~~--- 152 (234)
T cd07423 84 KLQGRNVKITHGLEETVAQLEAESEEFKEEVIEFYESLPSHLVLDEGKLVVAHAGIKEEMIGRDS----KR----VR--- 152 (234)
T ss_pred HhcCCCccccCcccchHHHHhhccHHHHHHHHHHHHhCCcEEEeCCCcEEEEeCCCChHhccccc----hh----he---
Confidence 8865432 22234454432 222357789999999999875 4699999998874321100 00 00
Q ss_pred HHHHHHHhcCCCCCCCCcccccccccchhhHHHHHhhhccccccCCCCccccccccCCCCCCCCCCCCCccCCCCCCCCc
Q psy2887 773 WKNLFFKLYNHNSINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRKTIDI 852 (899)
Q Consensus 773 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 852 (899)
....|.+.. . ... ........+|...+. +..
T Consensus 153 -----------~~~~~~~~~-------------------~--~~~--------------~~~~~~~~~~~~~~~---~~~ 183 (234)
T cd07423 153 -----------SFALYGDTT-------------------G--ETD--------------EFGLPVRRDWAKEYR---GDA 183 (234)
T ss_pred -----------eeeeccccc-------------------C--CcC--------------CCCCccchhhHhhCC---CCe
Confidence 000111000 0 000 000011234544333 356
Q ss_pred eEEEccCCCCCcccCCCeEEcccccccCCeeEEEEecCCceEEecc
Q psy2887 853 TVLFGHWSTLGLIMKPNIICLDTGCVWGNKLTALCLEDRSIIQVNN 898 (899)
Q Consensus 853 ~vv~GH~~~~~~~~~~~~~~iDtG~v~gg~Lta~~~~~~~~~~v~~ 898 (899)
+||||||++..+...++.++|||||||||+|||+++++++++||+.
T Consensus 184 ~vv~GHt~~~~~~~~~~~i~IDtGav~gG~Lt~l~~~~~~~~~~~~ 229 (234)
T cd07423 184 LVVYGHTPVPEPRWLNNTINIDTGCVFGGKLTALRYPEREIVSVPA 229 (234)
T ss_pred EEEECCCCCccceEeCCEEEEECCCCCCCcceEEECCCCcEEEeec
Confidence 8999999999998899999999999999999999999999999975
No 21
>KOG0741|consensus
Probab=99.96 E-value=1.3e-28 Score=260.00 Aligned_cols=165 Identities=23% Similarity=0.339 Sum_probs=129.8
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHh-------cCCCE
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN-------NQKDI 87 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~-------~~~~~ 87 (899)
+||||||||||||.+||.|.+.+.... |....+.+ +. .+|+|++|++++.+|..|.+ ..+-.
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLNAre-PKIVNGPe--------IL--~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLH 326 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLNARE-PKIVNGPE--------IL--NKYVGESEENVRKLFADAEEEQRRLGANSGLH 326 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhcCCC-CcccCcHH--------HH--HHhhcccHHHHHHHHHhHHHHHHhhCccCCce
Confidence 699999999999999999999884432 43333333 33 78999999999999999873 12346
Q ss_pred EEEEccccccccCCCCCc-----hhhHHHhhhhhhc----CCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCC
Q psy2887 88 IIFIDELHTMIGTGKVEG-----SIDAGNMLKPELS----RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEP 155 (899)
Q Consensus 88 iL~iDEi~~l~~~~~~~~-----~~~~~~~l~~~l~----~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p 155 (899)
|+++||+|+++..+.+.+ ...+.|.|+.-|+ -+++.+|+.||+.+ .+|.||+| ||.+ +++..|
T Consensus 327 IIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~D-----lIDEALLRPGRlEVqmEIsLP 401 (744)
T KOG0741|consen 327 IIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKD-----LIDEALLRPGRLEVQMEISLP 401 (744)
T ss_pred EEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchh-----hHHHHhcCCCceEEEEEEeCC
Confidence 999999999998776532 2456777777664 36899999999999 89999999 9997 999999
Q ss_pred CHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcc
Q psy2887 156 DIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYIS 196 (899)
Q Consensus 156 ~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (899)
++.-|.+||+...++.+.+ +.--++-.++.++.++..|.+
T Consensus 402 DE~gRlQIl~IHT~rMre~-~~l~~dVdl~elA~lTKNfSG 441 (744)
T KOG0741|consen 402 DEKGRLQILKIHTKRMREN-NKLSADVDLKELAALTKNFSG 441 (744)
T ss_pred CccCceEEEEhhhhhhhhc-CCCCCCcCHHHHHHHhcCCch
Confidence 9999999999888776543 333344557788888887766
No 22
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=99.96 E-value=2e-29 Score=257.16 Aligned_cols=201 Identities=26% Similarity=0.350 Sum_probs=141.9
Q ss_pred HHHHHhcccCcccccccccccHHHHHHHHHHhhccCCccceeeccccCCCCceEehhHHHHHhcCCccEEEccCChHhHH
Q psy2887 619 LKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLL 698 (899)
Q Consensus 619 ~~~L~~~~~~~~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~~~~l~~~~~~~~~v~GNHe~~~l 698 (899)
++.+....+.+.+.++|||||+++|+++|++++|++..|++|++||+|||||+|.+|++++++ .++.+|+||||.|++
T Consensus 8 ~~~~~~~~~~ri~vigDIHG~~~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s~~vl~~l~~--~~~~~v~GNHE~~~l 85 (218)
T PRK11439 8 YQRIAGHQWRHIWLVGDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLRCLQLLEE--HWVRAVRGNHEQMAL 85 (218)
T ss_pred eecccCCCCCeEEEEEcccCCHHHHHHHHHhcCCCcccCEEEEcCcccCCCcCHHHHHHHHHc--CCceEeeCchHHHHH
Confidence 344555566778999999999999999999999987789999999999999999999999975 468999999999999
Q ss_pred hHhhhccc----CchhchHHHhhCC--cChHHHHHHHhcCCceEEe----CCEEEEecccccccchHHHHHHhHHHHHHh
Q psy2887 699 DVLININK----KSKLDTFDDILDA--PDKKKLVSWLRTQPLAIYY----KKYLMIHAGVAKQWTAQQTIKLSHQVEKIL 768 (899)
Q Consensus 699 ~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~l~~lp~~~~~----~~~~~vHAg~~~~~~~~~~~~~~~~~~~~l 768 (899)
+++.+... ..+.+++..+... ....++++||++||++++. ++++|||||++..+.. .+.+
T Consensus 86 ~~~~~~~~~~w~~~gg~~~~~l~~~~~~~~~~~~~~l~~LP~~~~~~~~~~~~~~vHAg~p~~~~~-------~~~~--- 155 (218)
T PRK11439 86 DALASQQMSLWLMNGGDWFIALTDNQQKQAKTLLEKCQRLPFILEVHCRTGKHVIAHADYPADVYE-------WQKD--- 155 (218)
T ss_pred HHHHCCccchhhhCCChhhhhcchhhhHHHHHHHHHHhcCCcEEEeeccCCCEEEEeCCCCCCchh-------hhcc---
Confidence 98754321 1122233222111 1245678999999999874 4699999998532110 0000
Q ss_pred ccccHHHHHHHhcCCCCCCCCcccccccccchhhHHHHHhhhccccccCCCCccccccccCCCCCCCCCCCCCccCCCCC
Q psy2887 769 RTSYWKNLFFKLYNHNSINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRK 848 (899)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 848 (899)
.......|.+. ++... .++ ...
T Consensus 156 ------------~~~~~~~w~r~----------------------~~~~~--------------------~~~----~~~ 177 (218)
T PRK11439 156 ------------VDLHQVLWSRS----------------------RLGER--------------------QKG----QGI 177 (218)
T ss_pred ------------CCccceEEcCh----------------------hhhhc--------------------ccc----ccc
Confidence 00011234322 11110 000 011
Q ss_pred CCCceEEEccCCCCCcccCCCeEEcccccccCCeeEEEEec
Q psy2887 849 TIDITVLFGHWSTLGLIMKPNIICLDTGCVWGNKLTALCLE 889 (899)
Q Consensus 849 ~~~~~vv~GH~~~~~~~~~~~~~~iDtG~v~gg~Lta~~~~ 889 (899)
.+...|||||||+..+...++.++|||||||||+|||++++
T Consensus 178 ~~~~~vv~GHT~~~~~~~~~~~i~IDtGav~gg~Lt~l~~~ 218 (218)
T PRK11439 178 TGADHFWFGHTPLRHRVDIGNLHYIDTGAVFGGELTLVQLQ 218 (218)
T ss_pred cCCCEEEECCccCCCccccCCEEEEECCCCCCCeeEEEEcC
Confidence 13457999999999998889999999999999999999874
No 23
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.96 E-value=5.8e-28 Score=263.15 Aligned_cols=260 Identities=25% Similarity=0.397 Sum_probs=201.2
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHHhhcCCCC----CC-----CCceEEEEecCCCChHHHHHHHHHHHhccCCCce
Q psy2887 379 LLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSD----AK-----RPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI 449 (899)
Q Consensus 379 l~~l~~~l~~~v~gq~~~~~~l~~~i~~~~~~~~~----~~-----~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~ 449 (899)
..++++.|++.|+||+++++.+..++..+..++.. +. .+.+++||+||||||||++|+++|+.+ +.+|
T Consensus 68 p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l---~~pf 144 (413)
T TIGR00382 68 PKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL---NVPF 144 (413)
T ss_pred HHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc---CCCe
Confidence 35677889999999999999999988554444322 11 123589999999999999999999998 7899
Q ss_pred EEecccccccccchhhccCCCCCcccccccchhhHHHH-------hCCCEEEEEccccccCH--------------HHHH
Q psy2887 450 IRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVR-------RKPYSLILLDEIEKANS--------------DVFN 508 (899)
Q Consensus 450 ~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~-------~~~~~vl~lDEid~~~~--------------~~~~ 508 (899)
..++++.+. +++|+|.+....+...++ .+.++||||||||++++ .+|+
T Consensus 145 ~~~da~~L~-----------~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~ 213 (413)
T TIGR00382 145 AIADATTLT-----------EAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQ 213 (413)
T ss_pred EEechhhcc-----------ccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHH
Confidence 888877652 245888766555555443 34567999999999987 6999
Q ss_pred HHHHhhcCCceec---CCCceEecCCeEEEEecCC---------Chhhhhhh-h-----c---C--c-H----HHHHHHH
Q psy2887 509 ILLQILDDGRLTD---NRGRTINFRNTIIVMTSNL---------GSDKIKEM-E-----K---G--D-K----EIIKLAV 560 (899)
Q Consensus 509 ~Ll~~le~g~~~~---~~g~~~~~~~~~iI~tsn~---------~~~~~~~~-~-----~---~--~-~----~~~~~~~ 560 (899)
.||++|| |.+++ ..|+.+++.+.++|+|+|. +.+.+... . + . . . ..+....
T Consensus 214 ~LL~iLe-G~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~ 292 (413)
T TIGR00382 214 ALLKIIE-GTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVE 292 (413)
T ss_pred HHHHHhh-ccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHH
Confidence 9999996 88775 6688999999999999998 55443321 0 1 0 0 0 1112222
Q ss_pred HHHH-hhcCChhHhhccCeEEEecCCCHHHHHHHHHHH----HHHHHHHHHhcCcceeecHHHHHHHHhcccCccccccc
Q psy2887 561 MNEV-KIYFRPEFINRIDDIIVFRYLNRKNILSIANIQ----LNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARD 635 (899)
Q Consensus 561 ~~~l-~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~----l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~d 635 (899)
.+.+ +..|.|+|++|+|.+++|.||+.+++.+|+... ++++.+.+...++.+.++++++++|++.+|++.+|+|.
T Consensus 293 ~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~ 372 (413)
T TIGR00382 293 PEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARG 372 (413)
T ss_pred HHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchH
Confidence 2333 446999999999999999999999999999985 44555566667999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhhccCCc
Q psy2887 636 VHGCKKSLSILLKKIHKKSPE 656 (899)
Q Consensus 636 i~~~~~~l~~~l~~~~~~~~~ 656 (899)
|++. +++.+...-|+-+.
T Consensus 373 Lr~i---ie~~l~~~m~e~p~ 390 (413)
T TIGR00382 373 LRSI---VEGLLLDVMFDLPS 390 (413)
T ss_pred HHHH---HHHhhHHHHhhCCC
Confidence 9999 99998888776554
No 24
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.95 E-value=1.6e-26 Score=273.82 Aligned_cols=376 Identities=20% Similarity=0.293 Sum_probs=276.6
Q ss_pred hHHHHHHHHHHhhhhhhcCChhHH------HHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2887 203 KAIDLIDEAAAKIKIEIDSKPEIM------DKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIW 276 (899)
Q Consensus 203 ~~~~ll~~a~~~~~~~~~~~~~~l------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (899)
+...+.+..++.+.+....++..+ ++++..+..+..+.+.++-+.++ ..++++++.+.|++|..-++..
T Consensus 161 dp~~Lad~iA~~Lpl~~~eKQ~LLE~~d~~eRLe~Ll~lL~~Eleil~l~~~I-----~~~v~~~~~k~q~e~~lreq~~ 235 (784)
T PRK10787 161 DPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRI-----RNRVKKQMEKSQREYYLNEQMK 235 (784)
T ss_pred cHHHHHHHHHHHCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhhhhhhcchhhhh
Confidence 444567777777766555555544 57888888888888887776544 4568888888899888888777
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhhccchHhhhhhhhcchHHHHHHHHHhhhhcccCCCccccccccccCcChHHH
Q psy2887 277 KYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEI 356 (899)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~i 356 (899)
..++++.+.- .-+++++.++.+++.+..+. .....+++++.++.. |+++|+++.++++|++|
T Consensus 236 ~i~~elg~~~-~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~e~~~~~~----~~~~~~e~~~~~~yl~~--- 297 (784)
T PRK10787 236 AIQKELGEMD-DAPDENEALKRKIDAAKMPK----------EAKEKAEAELQKLKM----MSPMSAEATVVRGYIDW--- 297 (784)
T ss_pred hhcccccCCC-cchhHHHHHHHHHHhcCCCH----------HHHHHHHHHHHHHHh----CCCCCchHHHHHHHHHH---
Confidence 7777664321 11223334443333333221 122346677777765 57788899999999886
Q ss_pred HHHHHHHhCCCCcccchHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHH
Q psy2887 357 AEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCK 436 (899)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~ 436 (899)
.+.+||.+.+. +...+.+.++.|+++.+|++.+++.|...+..... .....++ .++|+||||||||++|+
T Consensus 298 ------~~~~pw~~~~~-~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~-~~~~~g~--~i~l~GppG~GKTtl~~ 367 (784)
T PRK10787 298 ------MVQVPWNARSK-VKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSR-VNKIKGP--ILCLVGPPGVGKTSLGQ 367 (784)
T ss_pred ------HHhCCCCCCCc-ccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHh-cccCCCc--eEEEECCCCCCHHHHHH
Confidence 88999998765 46789999999999999999999999887764332 1122233 59999999999999999
Q ss_pred HHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhC--CCEEEEEccccccCHHH----HHHH
Q psy2887 437 TLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRK--PYSLILLDEIEKANSDV----FNIL 510 (899)
Q Consensus 437 ~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~--~~~vl~lDEid~~~~~~----~~~L 510 (899)
.+|+.+ +.++++++++...+. ..+.|+...|+|...++.+ ..+... .+.|++|||+|++++.. ++.|
T Consensus 368 ~ia~~l---~~~~~~i~~~~~~d~---~~i~g~~~~~~g~~~G~~~-~~l~~~~~~~~villDEidk~~~~~~g~~~~aL 440 (784)
T PRK10787 368 SIAKAT---GRKYVRMALGGVRDE---AEIRGHRRTYIGSMPGKLI-QKMAKVGVKNPLFLLDEIDKMSSDMRGDPASAL 440 (784)
T ss_pred HHHHHh---CCCEEEEEcCCCCCH---HHhccchhccCCCCCcHHH-HHHHhcCCCCCEEEEEChhhcccccCCCHHHHH
Confidence 999999 788999987776543 4566666667777666443 333332 34699999999999875 6999
Q ss_pred HHhhcCC---ceecCC-CceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCC
Q psy2887 511 LQILDDG---RLTDNR-GRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLN 586 (899)
Q Consensus 511 l~~le~g---~~~~~~-g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~ 586 (899)
++++|.+ .+.|.. ....++++++||+|+|.- .++|+|++|| .+|.|.+|+
T Consensus 441 levld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-------------------------~i~~aLl~R~-~ii~~~~~t 494 (784)
T PRK10787 441 LEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-------------------------NIPAPLLDRM-EVIRLSGYT 494 (784)
T ss_pred HHHhccccEEEEecccccccccCCceEEEEcCCCC-------------------------CCCHHHhcce-eeeecCCCC
Confidence 9999975 455654 456788999999999841 2789999999 799999999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHhcCcceeecHHHHHHHHhcccCcccccccccccHHHHHHHHH
Q psy2887 587 RKNILSIANIQLN-ILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLK 648 (899)
Q Consensus 587 ~~~~~~i~~~~l~-~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l~ 648 (899)
.+++.+|++++|. +..++....+..+.+++++++++++ +|++.+|+|++.+. +.+++.
T Consensus 495 ~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~-~yt~e~GaR~LeR~---I~~i~r 553 (784)
T PRK10787 495 EDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIR-YYTREAGVRSLERE---ISKLCR 553 (784)
T ss_pred HHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHH-hCCcccCCcHHHHH---HHHHHH
Confidence 9999999999994 3333333334578999999999997 99999999999999 555553
No 25
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.95 E-value=3.2e-26 Score=275.25 Aligned_cols=377 Identities=22% Similarity=0.318 Sum_probs=273.9
Q ss_pred hHHHHHHHHHHhhhhh-hcCChhH------HHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2887 203 KAIDLIDEAAAKIKIE-IDSKPEI------MDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKI 275 (899)
Q Consensus 203 ~~~~ll~~a~~~~~~~-~~~~~~~------l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (899)
+...+.+..++.+.+. ...++.. .++++..+..+..+.+.++.+.++ ..++++++.+.|++|...++.
T Consensus 158 dp~~Lad~ia~~L~l~~~~eKQ~LLE~~d~~~RL~~l~~lL~~ele~l~l~~~I-----~~~v~~~~~~~qr~~~Lreql 232 (775)
T TIGR00763 158 EPGRLADFVAASLQLKEKDELQEVLETVNIEKRLKKALELLKKELELLKLQNKI-----TKKVEEKMEKTQREYYLREQL 232 (775)
T ss_pred CHHHHHHHHHHhcCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666554 4444443 458888888888888887777544 456888889999999888888
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccchHhhhhhhhcchHHHHHHHHHhhhhcccCCCccccccccccCcChHH
Q psy2887 276 WKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEE 355 (899)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 355 (899)
...++++.+.- .-+++++.++..++.+..+.. ....+.+++.++.. |+++|+++.+++.+++
T Consensus 233 k~i~~eLg~~~-~~~~~~~~~~~k~~~~~~~~~----------~~~~~~~e~~~~~~----~~~~~~~~~~~~~yl~--- 294 (775)
T TIGR00763 233 KAIKKELGIEK-DDKDELEKLKEKLEELKLPEE----------VKKVIEKELTKLSL----LEPSSSEFTVTRNYLD--- 294 (775)
T ss_pred HHHHHhhCCCC-CchhHHHHHHHHHHhcCCCHH----------HHHHHHHHHHHHHc----CCCCCchHHHHHHHHH---
Confidence 88777765321 122334555554444443221 22346667777765 4566667777766666
Q ss_pred HHHHHHHHhCCCCcccchHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHH
Q psy2887 356 IAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELC 435 (899)
Q Consensus 356 i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA 435 (899)
+++++||.+.... ...+..+++.|.++++|++.+++.|...+...... ..++++ +++|+||||||||++|
T Consensus 295 ------~~~~ip~~~~~~~-~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~-~~~~~~--~lll~GppG~GKT~lA 364 (775)
T TIGR00763 295 ------WLTDLPWGKYSKE-NLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLR-GKMKGP--ILCLVGPPGVGKTSLG 364 (775)
T ss_pred ------HHHCCCCcccccc-hhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhh-cCCCCc--eEEEECCCCCCHHHHH
Confidence 5899999987666 77889999999999999999999999876544321 112233 6999999999999999
Q ss_pred HHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhC--CCEEEEEccccccCHH----HHHH
Q psy2887 436 KTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRK--PYSLILLDEIEKANSD----VFNI 509 (899)
Q Consensus 436 ~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~--~~~vl~lDEid~~~~~----~~~~ 509 (899)
++||+.+ +.+++.++++.+.+ .+.+.|+...|+|...++.. +.+..+ ..+||||||||++++. ..+.
T Consensus 365 k~iA~~l---~~~~~~i~~~~~~~---~~~i~g~~~~~~g~~~g~i~-~~l~~~~~~~~villDEidk~~~~~~~~~~~a 437 (775)
T TIGR00763 365 KSIAKAL---NRKFVRFSLGGVRD---EAEIRGHRRTYVGAMPGRII-QGLKKAKTKNPLFLLDEIDKIGSSFRGDPASA 437 (775)
T ss_pred HHHHHHh---cCCeEEEeCCCccc---HHHHcCCCCceeCCCCchHH-HHHHHhCcCCCEEEEechhhcCCccCCCHHHH
Confidence 9999999 88999998876544 34455666677777666433 333322 3359999999999774 4589
Q ss_pred HHHhhcC---CceecCC-CceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCC
Q psy2887 510 LLQILDD---GRLTDNR-GRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYL 585 (899)
Q Consensus 510 Ll~~le~---g~~~~~~-g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l 585 (899)
|+++|+. +.+.|.. +..+++++++||+|||... .++|+|++|| .+|.|++|
T Consensus 438 Ll~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~------------------------~i~~~L~~R~-~vi~~~~~ 492 (775)
T TIGR00763 438 LLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSID------------------------TIPRPLLDRM-EVIELSGY 492 (775)
T ss_pred HHHhcCHHhcCccccccCCceeccCCEEEEEecCCch------------------------hCCHHHhCCe-eEEecCCC
Confidence 9999984 5666654 6778899999999999632 4789999999 68999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcCc---ceeecHHHHHHHHhcccCcccccccccccHHHHHHHHHHh
Q psy2887 586 NRKNILSIANIQLNILKNKLLKMNM---DLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKI 650 (899)
Q Consensus 586 ~~~~~~~i~~~~l~~~~~~~~~~~~---~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l~~~ 650 (899)
+.++..+|++.++. .+.....++ .+.++++++.++++ .|.+.+|+|+|.+. +.+++.++
T Consensus 493 ~~~e~~~I~~~~l~--~~~~~~~~l~~~~~~~~~~~l~~i~~-~~~~e~g~R~l~r~---i~~~~~~~ 554 (775)
T TIGR00763 493 TEEEKLEIAKKYLI--PKALEDHGLKPDELKITDEALLLLIK-YYTREAGVRNLERQ---IEKICRKA 554 (775)
T ss_pred CHHHHHHHHHHHHH--HHHHHHcCCCcceEEECHHHHHHHHH-hcChhcCChHHHHH---HHHHHHHH
Confidence 99999999998884 333343343 57899999999998 79999999999998 66666443
No 26
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.95 E-value=8.5e-27 Score=256.30 Aligned_cols=260 Identities=25% Similarity=0.368 Sum_probs=194.8
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHHhhcCCC-------CCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEE
Q psy2887 379 LLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLS-------DAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIR 451 (899)
Q Consensus 379 l~~l~~~l~~~v~gq~~~~~~l~~~i~~~~~~~~-------~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~ 451 (899)
..++...|++.|+||+.+++.+..++......+. +...+.+++||+||||||||++|+++|..+ +.+|+.
T Consensus 62 p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l---~~pf~~ 138 (412)
T PRK05342 62 PKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL---DVPFAI 138 (412)
T ss_pred HHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh---CCCcee
Confidence 3466778889999999999999888743322221 112244589999999999999999999999 889999
Q ss_pred ecccccccccchhhccCCCCCcccccccchhhHH-------HHhCCCEEEEEccccccCH--------------HHHHHH
Q psy2887 452 IDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEI-------VRRKPYSLILLDEIEKANS--------------DVFNIL 510 (899)
Q Consensus 452 ~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~-------~~~~~~~vl~lDEid~~~~--------------~~~~~L 510 (899)
++++.+.. .+|+|.+....+... +..+.++||||||||++++ .+|+.|
T Consensus 139 id~~~l~~-----------~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~L 207 (412)
T PRK05342 139 ADATTLTE-----------AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQAL 207 (412)
T ss_pred cchhhccc-----------CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHH
Confidence 99987643 257776655444433 2345679999999999975 399999
Q ss_pred HHhhcCCce--ecCCCceEecCCeEEEEecCC---------Chhhhhhh------hc--Cc----H-----HHHHHHH--
Q psy2887 511 LQILDDGRL--TDNRGRTINFRNTIIVMTSNL---------GSDKIKEM------EK--GD----K-----EIIKLAV-- 560 (899)
Q Consensus 511 l~~le~g~~--~~~~g~~~~~~~~~iI~tsn~---------~~~~~~~~------~~--~~----~-----~~~~~~~-- 560 (899)
|++||+... .+..|+..++.+.++|+|+|. +.+.+... .+ .+ . ..+...+
T Consensus 208 L~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~ 287 (412)
T PRK05342 208 LKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEP 287 (412)
T ss_pred HHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCH
Confidence 999985533 455677777888888888887 33322221 01 00 0 1111111
Q ss_pred HHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHH----HHHHHHHHHHHhcCcceeecHHHHHHHHhcccCcccccccc
Q psy2887 561 MNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN----IQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDV 636 (899)
Q Consensus 561 ~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~----~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di 636 (899)
.+.....|.|+|++|+|.++.|.||+.+++.+|+. ..++++.+.+...++.+.++++++++|++.+|++.+|+|.|
T Consensus 288 ~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~L 367 (412)
T PRK05342 288 EDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGL 367 (412)
T ss_pred HHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchH
Confidence 12233458999999999999999999999999998 45666677778889999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhhccCC
Q psy2887 637 HGCKKSLSILLKKIHKKSP 655 (899)
Q Consensus 637 ~~~~~~l~~~l~~~~~~~~ 655 (899)
++. +++.+...-|+-+
T Consensus 368 rri---ie~~l~~~~~~~p 383 (412)
T PRK05342 368 RSI---LEEILLDVMFELP 383 (412)
T ss_pred HHH---HHHHhHHHHHhcc
Confidence 999 8888877766443
No 27
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=99.95 E-value=2.1e-27 Score=241.49 Aligned_cols=205 Identities=21% Similarity=0.258 Sum_probs=146.0
Q ss_pred cccccccccccHHHHHHHHHHhhcc-----CCccceeeccccCCCCceEehhHHHHHhcCC-----ccEEEccCChHhHH
Q psy2887 629 LIYGARDVHGCKKSLSILLKKIHKK-----SPEANFIFLGDLINKGPQSLDTLRMVYSMRN-----YAKIVLGNHEIHLL 698 (899)
Q Consensus 629 ~~~~~~di~~~~~~l~~~l~~~~~~-----~~~~~li~~GD~~d~g~~~~~~~~~l~~~~~-----~~~~v~GNHe~~~l 698 (899)
..|++|||||+++.|+++++.+..+ ...+.+||+||||||||+|.+|+++++++.. .+.+|+||||.|++
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld~L~~l~~~~~~~~vv~LrGNHE~~~l 82 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEKHPKQRHVFLCGNHDFAFA 82 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHHHHHHhhhcccccceEEEecCChHHHH
Confidence 3578999999999999999887643 1245799999999999999999999998742 46899999999999
Q ss_pred hHhhh-ccc----------------------------------------------------------CchhchHHHh---
Q psy2887 699 DVLIN-INK----------------------------------------------------------KSKLDTFDDI--- 716 (899)
Q Consensus 699 ~~~~~-~~~----------------------------------------------------------~~~~~~~~~~--- 716 (899)
.++.. ... .++..|+.++
T Consensus 83 ~fL~~~p~~~d~~~f~~~w~~~~~~~e~~~~~~~~~~~~~h~~g~~W~~~~~~~~~~~~~~~~~~~~~gg~~Tl~SYGv~ 162 (304)
T cd07421 83 AFLGVLPRPSDGSEFKSTWKEYEKNEEREGWYKGEGFENMHLQGRRWAGKMKVTFNTVRGEPYKGSIYDARPTFESYGVP 162 (304)
T ss_pred hHhhcCCCccchhhhhhhhccccccccccccccccccccccccccchhhhccccccccccccccccccCcHHHHHHcCCC
Confidence 98875 111 0122344333
Q ss_pred -----hCCcChHHHHHHHhcCCceEEeCCE-------------EEEecccccccchHHHHHHhHHHHHHhccccHHHHHH
Q psy2887 717 -----LDAPDKKKLVSWLRTQPLAIYYKKY-------------LMIHAGVAKQWTAQQTIKLSHQVEKILRTSYWKNLFF 778 (899)
Q Consensus 717 -----~~~~~~~~~~~~l~~lp~~~~~~~~-------------~~vHAg~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 778 (899)
+.+..++++.+||++||++++.+++ +|||||+.|.. ++.+|.+. |+...+.
T Consensus 163 ~~~~~l~~avP~~H~~fl~~l~~~~~~~~~~~~~~~g~~~~~lifVHAGlrPg~------pLe~Q~~~-L~~~d~~---- 231 (304)
T cd07421 163 HGSSDLIKAVPEEHKKFLRNLVWVHEEDDVCIETEEGLKHCKLIAVHAGLEKSN------SVEEQLKL-LRTKDTS---- 231 (304)
T ss_pred cchHHHHHhCCHHHHHHHHhCCceEEeCcccccccccccccceEEEEcccCCCC------ChHHhhhh-hhccccc----
Confidence 2223478999999999999999888 99999999954 45555543 2211111
Q ss_pred HhcCCCCCCCCcccccccccchhhHHHHHhhhccccccCCCCccccccccCCCCCCCCCCCCCccCCCCCCCCceEEEcc
Q psy2887 779 KLYNHNSINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRKTIDITVLFGH 858 (899)
Q Consensus 779 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~vv~GH 858 (899)
....+..|. |..||+.... -...+..||+||
T Consensus 232 --~p~~~~l~~----------------------R~~f~~~~~~-------------------------~~~~~~~VVhGH 262 (304)
T cd07421 232 --IPKIAPLSG----------------------RKNVWNIPQE-------------------------LADKKTIVVSGH 262 (304)
T ss_pred --ccccccccc----------------------chhhhcCccc-------------------------ccCCCeEEEECC
Confidence 111223333 2333332111 012357899999
Q ss_pred CCCCCcccCCCeEEcccccccCCeeEEEE-ecCCceEE
Q psy2887 859 WSTLGLIMKPNIICLDTGCVWGNKLTALC-LEDRSIIQ 895 (899)
Q Consensus 859 ~~~~~~~~~~~~~~iDtG~v~gg~Lta~~-~~~~~~~~ 895 (899)
| ..+.+.+++++|||||+++|+|||+. +++.+++.
T Consensus 263 t--~~~~~~~~Ri~iDtGa~~~~~l~aa~vlp~~~~~~ 298 (304)
T cd07421 263 H--GKLHIDGLRLIIDEGGGFDDRPIAAIVLPSKEIIR 298 (304)
T ss_pred C--CCceecCCEEEEECCCCcCCceeEEEEeccceeEe
Confidence 9 56899999999999999999877655 68888876
No 28
>KOG2004|consensus
Probab=99.94 E-value=5.8e-25 Score=240.70 Aligned_cols=376 Identities=21% Similarity=0.310 Sum_probs=265.4
Q ss_pred HHHHHHHHHhhhhhhcCChhHH------HHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2887 205 IDLIDEAAAKIKIEIDSKPEIM------DKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKY 278 (899)
Q Consensus 205 ~~ll~~a~~~~~~~~~~~~~~l------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (899)
..|.|..++....+....++.+ .+++..+..+..+.+.++-+.++ ...++.++..-+++|-..++...+
T Consensus 251 ~~LaD~~aai~~~~~~elq~vL~~~di~~Rl~~al~llkke~e~~klq~ki-----~k~vE~k~~~~~r~ylL~eQlk~I 325 (906)
T KOG2004|consen 251 IKLADFGAAISGAEFHELQEVLEETDIEKRLEKALELLKKELELAKLQQKI-----GKEVEEKIKQDHREYLLREQLKAI 325 (906)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHhhhhHHHHHHHHHHHHHHH
Confidence 3445555555544433333333 35666666666666665555332 223445555555555555555555
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhhccchHhhhhhhhcchHHHHHHHHHhhhhcccCCCccccccccccCcChHHHHH
Q psy2887 279 EKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAE 358 (899)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~ 358 (899)
.+++..+...-.+..+.++.+......+ .....-...++.+++. +.++++++.++++|++|
T Consensus 326 KkeLg~e~Ddkd~~~~~~~er~~~~~~P----------~~v~kv~~eEl~kL~~----le~~~sEfnvtrNYLdw----- 386 (906)
T KOG2004|consen 326 KKELGIEKDDKDALVEKFRERIKSLKMP----------DHVLKVIDEELTKLKL----LEPSSSEFNVTRNYLDW----- 386 (906)
T ss_pred HHhhCCCccchhhHHHHHHHHhhhccCc----------HHHHHHHHHHHHHHhc----cCccccchhHHHHHHHH-----
Confidence 5544433222222223333332222221 1122235666777765 45667788999999886
Q ss_pred HHHHHhCCCCcccchHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHH
Q psy2887 359 IVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTL 438 (899)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~l 438 (899)
++.+||++.+.+ ...+...++.|+++-.|.++++++|.+.+...+..- ...++ .++|+||||+|||++|+.|
T Consensus 387 ----lt~LPWgk~S~E-n~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrg-s~qGk--IlCf~GPPGVGKTSI~kSI 458 (906)
T KOG2004|consen 387 ----LTSLPWGKSSTE-NLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRG-SVQGK--ILCFVGPPGVGKTSIAKSI 458 (906)
T ss_pred ----HHhCCCCCCChh-hhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcc-cCCCc--EEEEeCCCCCCcccHHHHH
Confidence 899999998777 778889999999999999999999999887665321 12233 5889999999999999999
Q ss_pred HHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhC--CCEEEEEccccccCHH----HHHHHHH
Q psy2887 439 SACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRK--PYSLILLDEIEKANSD----VFNILLQ 512 (899)
Q Consensus 439 a~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~--~~~vl~lDEid~~~~~----~~~~Ll~ 512 (899)
|++| +..|+++....+.+ ++.+-|+...|+|.-.++.+ +.++.. .+.+++||||||+... -..+||.
T Consensus 459 A~AL---nRkFfRfSvGG~tD---vAeIkGHRRTYVGAMPGkiI-q~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLE 531 (906)
T KOG2004|consen 459 ARAL---NRKFFRFSVGGMTD---VAEIKGHRRTYVGAMPGKII-QCLKKVKTENPLILIDEVDKLGSGHQGDPASALLE 531 (906)
T ss_pred HHHh---CCceEEEecccccc---HHhhcccceeeeccCChHHH-HHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHH
Confidence 9999 99999999888866 46677888889998888654 455543 3459999999999863 4688999
Q ss_pred hhcCC---ceecCC-CceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHH
Q psy2887 513 ILDDG---RLTDNR-GRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRK 588 (899)
Q Consensus 513 ~le~g---~~~~~~-g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~ 588 (899)
+||.. .|.|.. ...++.++++||+|+|. -..++|+|++|+ .+|.+.-|..+
T Consensus 532 lLDPEQNanFlDHYLdVp~DLSkVLFicTAN~------------------------idtIP~pLlDRM-EvIelsGYv~e 586 (906)
T KOG2004|consen 532 LLDPEQNANFLDHYLDVPVDLSKVLFICTANV------------------------IDTIPPPLLDRM-EVIELSGYVAE 586 (906)
T ss_pred hcChhhccchhhhccccccchhheEEEEeccc------------------------cccCChhhhhhh-heeeccCccHH
Confidence 99853 455544 67889999999999995 345899999999 89999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCc---ceeecHHHHHHHHhcccCcccccccccccHHHHHHHHHHh
Q psy2887 589 NILSIANIQLNILKNKLLKMNM---DLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKI 650 (899)
Q Consensus 589 ~~~~i~~~~l~~~~~~~~~~~~---~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l~~~ 650 (899)
|..+|++.+| +.+..+..|+ .+.++++++..|.+ .|.+.-|+|.+... +++...++
T Consensus 587 EKv~IA~~yL--ip~a~~~~gl~~e~v~is~~al~~lI~-~YcrEaGVRnLqk~---iekI~Rk~ 645 (906)
T KOG2004|consen 587 EKVKIAERYL--IPQALKDCGLKPEQVKISDDALLALIE-RYCREAGVRNLQKQ---IEKICRKV 645 (906)
T ss_pred HHHHHHHHhh--hhHHHHHcCCCHHhcCccHHHHHHHHH-HHHHHHhHHHHHHH---HHHHHHHH
Confidence 9999999998 4455555554 57899999988887 68899999999999 55544443
No 29
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=9.3e-25 Score=252.30 Aligned_cols=377 Identities=27% Similarity=0.335 Sum_probs=246.0
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
....+++++||||+|||++++++|.. . -.. ..++..... +++.|+.+..+..++..+.... |++++
T Consensus 16 ~~~~~v~~~g~~~~~~t~~~~~~a~~---~-------~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~-~~ii~ 81 (494)
T COG0464 16 EPPKGVLLHGPPGTGKTLLARALANE---G-------AEF-LSINGPEIL--SKYVGESELRLRELFEEAEKLA-PSIIF 81 (494)
T ss_pred CCCCCceeeCCCCCchhHHHHHHHhc---c-------Ccc-cccCcchhh--hhhhhHHHHHHHHHHHHHHHhC-CCeEe
Confidence 45568999999999999999999986 1 112 333333333 6788999999999999998554 78999
Q ss_pred EccccccccCCCCCc---hhhHHHhhhhhh---cCCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCHHHHH
Q psy2887 91 IDELHTMIGTGKVEG---SIDAGNMLKPEL---SRGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETI 161 (899)
Q Consensus 91 iDEi~~l~~~~~~~~---~~~~~~~l~~~l---~~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~~e~~ 161 (899)
+||++.+.+...... ...+...+...+ .++.+.++++|+.+. .+++++++ ||+. +.+..|+...+.
T Consensus 82 ~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~ 156 (494)
T COG0464 82 IDEIDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPD-----GLDPAKRRPGRFDREIEVNLPDEAGRL 156 (494)
T ss_pred echhhhcccCccccccchhhHHHHHHHHhcccccCCceEEEeecCCcc-----ccChhHhCccccceeeecCCCCHHHHH
Confidence 999999998775511 122333343333 233478888888887 88999888 8886 899999999888
Q ss_pred HHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHHHH
Q psy2887 162 SILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHE 241 (899)
Q Consensus 162 ~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 241 (899)
+|+.......... .+.....++..+.+|.. ++...+...+......+..
T Consensus 157 ei~~~~~~~~~~~-----~~~~~~~~a~~~~~~~~-----~~~~~l~~~~~~~~~~r~~--------------------- 205 (494)
T COG0464 157 EILQIHTRLMFLG-----PPGTGKTLAARTVGKSG-----ADLGALAKEAALRELRRAI--------------------- 205 (494)
T ss_pred HHHHHHHhcCCCc-----ccccHHHHHHhcCCccH-----HHHHHHHHHHHHHHHHhhh---------------------
Confidence 8887655432211 13445555666555544 2222222222211110000
Q ss_pred HHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccchHhhhhhhhcchH
Q psy2887 242 AIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELN 321 (899)
Q Consensus 242 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (899)
. ...........
T Consensus 206 ----~----------------------------------------------------------------~~~~~~~~~~~ 217 (494)
T COG0464 206 ----D----------------------------------------------------------------LVGEYIGVTED 217 (494)
T ss_pred ----c----------------------------------------------------------------cCcccccccHH
Confidence 0 00000000001
Q ss_pred HHHHHHHHhhhhcccCCCccccccccccCcChHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHhhccCCChHHHHHHHH
Q psy2887 322 KLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVS 401 (899)
Q Consensus 322 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~v~gq~~~~~~l~ 401 (899)
+.+..++..... .+.....+.++++ ++.|.+.++..+.
T Consensus 218 ~~~~~l~~~~~~--------~~~~~~~~~v~~~----------------------------------diggl~~~k~~l~ 255 (494)
T COG0464 218 DFEEALKKVLPS--------RGVLFEDEDVTLD----------------------------------DIGGLEEAKEELK 255 (494)
T ss_pred HHHHHHHhcCcc--------cccccCCCCccee----------------------------------hhhcHHHHHHHHH
Confidence 111111111110 0001112233332 3334444554444
Q ss_pred HHHHHhh--------cCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCc
Q psy2887 402 NAIRRSR--------SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGY 473 (899)
Q Consensus 402 ~~i~~~~--------~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 473 (899)
.++.... .++ ++...+||+||||||||++|+++|..+ +.+|+.++++++.++ |
T Consensus 256 e~v~~~~~~~e~~~~~~~----~~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~~~l~sk------------~ 316 (494)
T COG0464 256 EAIETPLKRPELFRKLGL----RPPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKGSELLSK------------W 316 (494)
T ss_pred HHHHhHhhChHHHHhcCC----CCCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeCHHHhcc------------c
Confidence 4443221 122 222369999999999999999999988 899999999988776 8
Q ss_pred cccccc--chhhHHHHhCCCEEEEEccccccCH-----------HHHHHHHHhhcCCceecCCCceEecCCeEEEEecCC
Q psy2887 474 IGYEEG--GYLTEIVRRKPYSLILLDEIEKANS-----------DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNL 540 (899)
Q Consensus 474 ~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~-----------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~ 540 (899)
+|.++. +.++..++...+|||||||+|++.+ .+++.|+..++.-. ...++++|.+||.
T Consensus 317 vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e---------~~~~v~vi~aTN~ 387 (494)
T COG0464 317 VGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIE---------KAEGVLVIAATNR 387 (494)
T ss_pred cchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCC---------ccCceEEEecCCC
Confidence 888887 7788888988899999999997653 57889999887421 3466788999997
Q ss_pred ChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhh--ccCeEEEecCCCHHHHHHHHHHHHH
Q psy2887 541 GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLN 599 (899)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~~~~~~i~~~~l~ 599 (899)
+.. ++|+++. |||.++.|++++.++..+|+..++.
T Consensus 388 p~~------------------------ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 388 PDD------------------------LDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred ccc------------------------cCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 554 5666776 9999999999999999999998884
No 30
>PHA02239 putative protein phosphatase
Probab=99.94 E-value=2.6e-26 Score=234.20 Aligned_cols=174 Identities=23% Similarity=0.445 Sum_probs=128.7
Q ss_pred ccccccccccHHHHHHHHHHhhccC-CccceeeccccCCCCceEehhHHHHHhc---CCccEEEccCChHhHHhHhhhcc
Q psy2887 630 IYGARDVHGCKKSLSILLKKIHKKS-PEANFIFLGDLINKGPQSLDTLRMVYSM---RNYAKIVLGNHEIHLLDVLININ 705 (899)
Q Consensus 630 ~~~~~di~~~~~~l~~~l~~~~~~~-~~~~li~~GD~~d~g~~~~~~~~~l~~~---~~~~~~v~GNHe~~~l~~~~~~~ 705 (899)
.+.++|||||++.|.++++++..+. +.+.++++||++||||.+.+|+++++++ ..++.+|+||||.|+++++.+..
T Consensus 3 ~~~IsDIHG~~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~~v~~~l~~~~~~~~~~~~l~GNHE~~~l~~~~~~~ 82 (235)
T PHA02239 3 IYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFDLMSNDDNVVTLLGNHDDEFYNIMENVD 82 (235)
T ss_pred EEEEECCCCCHHHHHHHHHHHhhcCCCCCEEEEecCcCCCCCChHHHHHHHHHHhhcCCCeEEEECCcHHHHHHHHhCch
Confidence 3779999999999999999986543 4689999999999999999999998875 23689999999999999875433
Q ss_pred c----------CchhchHHHhh------------------------------CCcChHHHHHHHhcCCceEEeCCEEEEe
Q psy2887 706 K----------KSKLDTFDDIL------------------------------DAPDKKKLVSWLRTQPLAIYYKKYLMIH 745 (899)
Q Consensus 706 ~----------~~~~~~~~~~~------------------------------~~~~~~~~~~~l~~lp~~~~~~~~~~vH 745 (899)
. .++.+|+.++. ..+...++..|++++|++++.++++|||
T Consensus 83 ~~~~~~~~wl~~GG~~Tl~Syg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~lp~~~~~~~~ifVH 162 (235)
T PHA02239 83 RLSIYDIEWLSRYCIETLNSYGVSTVTLKYSSVEENLRNNYDFIKSELKKLKESDDYRKFKILMVNCRKYYKEDKYIFSH 162 (235)
T ss_pred hcccchHHHHHcCCHHHHHHcCCCCccchhhHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHhCcceEEECCEEEEe
Confidence 1 22233333220 0123467788999999999999999999
Q ss_pred cccccccchHHHHHHhHHHHHHhccccHHHHHHHhcCCCCCCCCcccccccccchhhHHHHHhhhccccccCCCCccccc
Q psy2887 746 AGVAKQWTAQQTIKLSHQVEKILRTSYWKNLFFKLYNHNSINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFI 825 (899)
Q Consensus 746 Ag~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~ 825 (899)
||+.|..+ +.+|....|. |.|. | .
T Consensus 163 AGi~p~~~------~~~q~~~~ll------------------WiR~-----------------------f--~------- 186 (235)
T PHA02239 163 SGGVSWKP------VEEQTIDQLI------------------WSRD-----------------------F--Q------- 186 (235)
T ss_pred CCCCCCCC------hhhCCHhHeE------------------Eecc-----------------------c--C-------
Confidence 99998543 3344443332 4321 1 0
Q ss_pred cccCCCCCCCCCCCCCccCCCCCCCCceEEEccCCCCC--cccCCCeEEcccccccC
Q psy2887 826 KKNIKNNNFQNNYIPWFDLPNRKTIDITVLFGHWSTLG--LIMKPNIICLDTGCVWG 880 (899)
Q Consensus 826 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~vv~GH~~~~~--~~~~~~~~~iDtG~v~g 880 (899)
....+++|||||||+.. +...++.++||||||+|
T Consensus 187 ---------------------~~~~g~~vV~GHTp~~~~~~~~~~~~I~IDtGa~~g 222 (235)
T PHA02239 187 ---------------------PRKDGFTYVCGHTPTDSGEVEINGDMLMCDVGAVFR 222 (235)
T ss_pred ---------------------CCCCCcEEEECCCCCCCCcccccCCEEEeecCcccc
Confidence 01135689999999964 45557789999999996
No 31
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=99.93 E-value=4.3e-26 Score=231.85 Aligned_cols=198 Identities=23% Similarity=0.278 Sum_probs=135.4
Q ss_pred hcccCcccccccccccHHHHHHHHHHhhccCCccceeeccccCCCCceEehhHHHHHhcCCccEEEccCChHhHHhHhhh
Q psy2887 624 NIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVLIN 703 (899)
Q Consensus 624 ~~~~~~~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~~~~l~~~~~~~~~v~GNHe~~~l~~~~~ 703 (899)
...+.+.+.++|||||+++|+++++++.|....|++|++||++||||.+.+|++++.+ .++.+|+||||+|+++++..
T Consensus 11 ~~~~~ri~visDiHg~~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~~~~l~~l~~--~~~~~v~GNHE~~~~~~~~~ 88 (218)
T PRK09968 11 AHHYRHIWVVGDIHGEYQLLQSRLHQLSFCPETDLLISVGDNIDRGPESLNVLRLLNQ--PWFISVKGNHEAMALDAFET 88 (218)
T ss_pred CCCCCeEEEEEeccCCHHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCHHHHHHHHhh--CCcEEEECchHHHHHHHHhc
Confidence 3345567889999999999999999998877789999999999999999999999964 46899999999999998753
Q ss_pred cccC----chhchHHHhhCCc--ChHHHHHHHhcCCceEEe----CCEEEEecccccccchHHHHHHhHHHHHHhccccH
Q psy2887 704 INKK----SKLDTFDDILDAP--DKKKLVSWLRTQPLAIYY----KKYLMIHAGVAKQWTAQQTIKLSHQVEKILRTSYW 773 (899)
Q Consensus 704 ~~~~----~~~~~~~~~~~~~--~~~~~~~~l~~lp~~~~~----~~~~~vHAg~~~~~~~~~~~~~~~~~~~~l~~~~~ 773 (899)
.... .+..+..++.... ....+..||++||++++. .+++|||||++..+. .+....
T Consensus 89 ~~~~~~~~~gg~~~~~l~~~~~~~~~~~~~~L~~LP~~~~~~~~g~~~~~vHAg~p~~~~-----~~~~~~--------- 154 (218)
T PRK09968 89 GDGNMWLASGGDWFFDLNDSEQQEATDLLLKFHHLPHIIEITNDNIKYVIAHADYPGDEY-----DFGKEI--------- 154 (218)
T ss_pred CChhHHHHccCHHHhcCCHHHHHHHHHHHHHHhcCCeEEEEeeCCCcEEEEeCCCCCchh-----hhcccc---------
Confidence 2211 1112221111111 123456799999999875 358999999853210 000000
Q ss_pred HHHHHHhcCCCCCCCCcccccccccchhhHHHHHhhhccccccCCCCccccccccCCCCCCCCCCCCCccCCCCCCCCce
Q psy2887 774 KNLFFKLYNHNSINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRKTIDIT 853 (899)
Q Consensus 774 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 853 (899)
...+..|.+.. +. ....+|+..+ .+...
T Consensus 155 --------~~~~~~w~r~~----------------------~~-------------------~~~~~~~~~~---~~~~~ 182 (218)
T PRK09968 155 --------AESELLWPVDR----------------------VQ-------------------KSLNGELQQI---NGADY 182 (218)
T ss_pred --------chhhceeCcHH----------------------Hh-------------------hCcccccccc---CCCCE
Confidence 00111233211 00 0111222111 23468
Q ss_pred EEEccCCCCCcccCCCeEEcccccccCCeeEEEEec
Q psy2887 854 VLFGHWSTLGLIMKPNIICLDTGCVWGNKLTALCLE 889 (899)
Q Consensus 854 vv~GH~~~~~~~~~~~~~~iDtG~v~gg~Lta~~~~ 889 (899)
||||||+...+...++.++|||||++||+|||+++.
T Consensus 183 vv~GHTh~~~~~~~~~~i~IDtGs~~gG~Lt~~~~~ 218 (218)
T PRK09968 183 FIFGHMMFDNIQTFANQIYIDTGSPKSGRLSFYKIK 218 (218)
T ss_pred EEECCCCcCcceeECCEEEEECCCCCCCceeEEecC
Confidence 999999999888888999999999999999999863
No 32
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=99.92 E-value=4.6e-25 Score=223.97 Aligned_cols=192 Identities=25% Similarity=0.291 Sum_probs=131.8
Q ss_pred ccccccccccHHHHHHHHHHhhccCCccceeeccccCCCCceEehhHHHHHhcCCccEEEccCChHhHHhHhhhccc---
Q psy2887 630 IYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVLININK--- 706 (899)
Q Consensus 630 ~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~~~~l~~~~~~~~~v~GNHe~~~l~~~~~~~~--- 706 (899)
.+.++||||++.+|+++++.+++....|.++++||++|+||.+.++++++++ .++.+|+||||.+++.+..+...
T Consensus 3 i~~isDiHg~~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~~~~~~~~l~~--~~~~~v~GNhe~~~~~~~~~~~~~~~ 80 (207)
T cd07424 3 DFVVGDIHGHYSLLQKALDAVGFDPARDRLISVGDLIDRGPESLACLELLLE--PWFHAVRGNHEQMAIDALRAEPLDAV 80 (207)
T ss_pred EEEEECCCCCHHHHHHHHHHcCCCCCCCEEEEeCCcccCCCCHHHHHHHHhc--CCEEEeECCChHHHHhHhhCCCcchh
Confidence 3678999999999999999988766679999999999999999999999975 45899999999999987654211
Q ss_pred ---CchhchHHHhhCCcChHHHHHHHhcCCceEEeC----CEEEEecccccccchHHHH--HHhHHHHHHhccccHHHHH
Q psy2887 707 ---KSKLDTFDDILDAPDKKKLVSWLRTQPLAIYYK----KYLMIHAGVAKQWTAQQTI--KLSHQVEKILRTSYWKNLF 777 (899)
Q Consensus 707 ---~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~~----~~~~vHAg~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 777 (899)
..+..+..+.......+.+.+||++||++++.+ ++++||||+++........ ++..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lP~~~~i~~~g~~~~~vHag~~~~~~~~~~~~~~~~~~~------------- 147 (207)
T cd07424 81 RWLANGGEWFLDLPDEELRRWLALKLEQLPLAIEVETEGGKVGIVHADYPSDDWSDGVGAVTLRPED------------- 147 (207)
T ss_pred HHHhcCCeehhhcChHHHHHHHHHHHHhCCeEEEEEeCCCEEEEECCCCCcchhhhhhhccccCccc-------------
Confidence 011222222222222456889999999998752 5899999987642110000 000000
Q ss_pred HHhcCCCCCCCCcccccccccchhhHHHHHhhhccccccCCCCccccccccCCCCCCCCCCCCCccC-CCCCCCCceEEE
Q psy2887 778 FKLYNHNSINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDL-PNRKTIDITVLF 856 (899)
Q Consensus 778 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~~-~~~~~~~~~vv~ 856 (899)
.....|.+.. |... .....+...|||
T Consensus 148 -----~~~~~w~~~~------------------------------------------------~~~~~~~~~~~~~~iV~ 174 (207)
T cd07424 148 -----IEELLWSRTR------------------------------------------------IQKAQTQPIKGVDAVVH 174 (207)
T ss_pred -----ceeeeeccch------------------------------------------------hhhcCccccCCCCEEEE
Confidence 0111222110 0000 001112467999
Q ss_pred ccCCCCCcccCCCeEEcccccccCCeeEEEEec
Q psy2887 857 GHWSTLGLIMKPNIICLDTGCVWGNKLTALCLE 889 (899)
Q Consensus 857 GH~~~~~~~~~~~~~~iDtG~v~gg~Lta~~~~ 889 (899)
|||+++.+...++.++||||||+||+|||+++.
T Consensus 175 GHTh~~~~~~~~~~i~ID~Gsv~gg~Lt~~~~~ 207 (207)
T cd07424 175 GHTPVKRPLRLGNVLYIDTGAVFDGNLTLLDLQ 207 (207)
T ss_pred CCCCCCcceEECCEEEEECCCCCCCeEEEEecC
Confidence 999999988889999999999999999999873
No 33
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.6e-24 Score=217.68 Aligned_cols=177 Identities=24% Similarity=0.311 Sum_probs=149.4
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
..+.+||||||||||||.||+|+|+.. ++.|+.+..+.+. .+|.|+..+.++++|.-|+. ..|||+|
T Consensus 183 ~PPKGVLLYGPPGTGKTLLAkAVA~~T----------~AtFIrvvgSElV--qKYiGEGaRlVRelF~lAre-kaPsIIF 249 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLAKAVANQT----------DATFIRVVGSELV--QKYIGEGARLVRELFELARE-KAPSIIF 249 (406)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhcc----------CceEEEeccHHHH--HHHhccchHHHHHHHHHHhh-cCCeEEE
Confidence 456789999999999999999999988 8999999988888 78999999999999999985 4599999
Q ss_pred EccccccccCCCC---CchhhHHHhhhhhh-------cCCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCH
Q psy2887 91 IDELHTMIGTGKV---EGSIDAGNMLKPEL-------SRGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDI 157 (899)
Q Consensus 91 iDEi~~l~~~~~~---~~~~~~~~~l~~~l-------~~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~ 157 (899)
|||+|++..++-. ++..+++..++++| .+++|.||+|||.++ -+||||+| ||+. |+||.|+.
T Consensus 250 iDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D-----~LDPALLRPGR~DRkIEfplPd~ 324 (406)
T COG1222 250 IDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPD-----ILDPALLRPGRFDRKIEFPLPDE 324 (406)
T ss_pred EechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcc-----ccChhhcCCCcccceeecCCCCH
Confidence 9999999876543 45567777777777 368999999999999 89999999 9996 99999999
Q ss_pred HHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhh
Q psy2887 158 EETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 215 (899)
Q Consensus 158 ~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~ 215 (899)
+.|.+||+.+..+.....+++ ++.+++.+.++.+ ++...++.+|...+
T Consensus 325 ~gR~~Il~IHtrkM~l~~dvd-----~e~la~~~~g~sG-----AdlkaictEAGm~A 372 (406)
T COG1222 325 EGRAEILKIHTRKMNLADDVD-----LELLARLTEGFSG-----ADLKAICTEAGMFA 372 (406)
T ss_pred HHHHHHHHHHhhhccCccCcC-----HHHHHHhcCCCch-----HHHHHHHHHHhHHH
Confidence 999999999988866554444 4677888877665 66777777776443
No 34
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.91 E-value=3.7e-24 Score=207.91 Aligned_cols=152 Identities=49% Similarity=0.840 Sum_probs=130.4
Q ss_pred CCceEEEEecCCCChHHHHHHHHHHHhc-cCCCceEEeccccccc----ccchhhccCCCCCcccccccchhhHHHHhCC
Q psy2887 416 RPYGSFMFLGPTGVGKTELCKTLSACIF-NNEESIIRIDMSEFIE----KHSISRLIGAPPGYIGYEEGGYLTEIVRRKP 490 (899)
Q Consensus 416 ~~~~~ill~GppGtGKT~lA~~la~~l~-~~~~~~~~~~~~~~~~----~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~ 490 (899)
+|.+++||+||+|||||.+|+++|+.++ +...+++.+||+++.. .+.++.++|.+++|++..+.
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~----------- 69 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEG----------- 69 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHH-----------
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccch-----------
Confidence 4667999999999999999999999998 7888999999999999 77778888888887665443
Q ss_pred CEEEEEccccccCH-----------HHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhc---CcHHHH
Q psy2887 491 YSLILLDEIEKANS-----------DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEK---GDKEII 556 (899)
Q Consensus 491 ~~vl~lDEid~~~~-----------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~---~~~~~~ 556 (899)
+|||||||||+++ .+|+.||++||+|++++..|+++++++++||+|||.+......... ......
T Consensus 70 -gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~~~~~~~~~~~~~~~~ 148 (171)
T PF07724_consen 70 -GVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEEIIDASRSGEAIEQEQ 148 (171)
T ss_dssp -TEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHHHHHCHHHCTCCHHHH
T ss_pred -hhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccchhhhhhccccccHHHH
Confidence 3999999999999 9999999999999999999999999999999999999887666432 234455
Q ss_pred HHHHHHHHhhcCChhHhhccCeE
Q psy2887 557 KLAVMNEVKIYFRPEFINRIDDI 579 (899)
Q Consensus 557 ~~~~~~~l~~~~~~~l~~R~~~~ 579 (899)
.....+.+...|.|+|++|||.+
T Consensus 149 ~~~~~~~~~~~f~pEf~~Ri~~i 171 (171)
T PF07724_consen 149 EEQIRDLVEYGFRPEFLGRIDVI 171 (171)
T ss_dssp CHHHHHHHHHTS-HHHHTTSSEE
T ss_pred HHHHHHHHHcCCCHHHHccCCcC
Confidence 56677888999999999999754
No 35
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.90 E-value=7.3e-23 Score=198.66 Aligned_cols=162 Identities=25% Similarity=0.342 Sum_probs=136.9
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEE
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFI 91 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~i 91 (899)
.+.|||||||||||||++|+++|++. +.+++.+....++ +.++|+..+++.++++.|.+. .|||+||
T Consensus 150 APknVLFyGppGTGKTm~Akalane~----------kvp~l~vkat~li--GehVGdgar~Ihely~rA~~~-aPcivFi 216 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANEA----------KVPLLLVKATELI--GEHVGDGARRIHELYERARKA-APCIVFI 216 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhccc----------CCceEEechHHHH--HHHhhhHHHHHHHHHHHHHhc-CCeEEEe
Confidence 45699999999999999999999998 8899999999998 789999999999999999865 4999999
Q ss_pred ccccccccCCCC----CchhhHHHhhhhhh----cCCceEEEEecChhHHHHhhhcCHHHHhcccc-ccccCCCHHHHHH
Q psy2887 92 DELHTMIGTGKV----EGSIDAGNMLKPEL----SRGELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETIS 162 (899)
Q Consensus 92 DEi~~l~~~~~~----~~~~~~~~~l~~~l----~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~-i~l~~p~~~e~~~ 162 (899)
||+|.+.-++.. +.-.++.|+|+..| ++..|+.|++||.++ .+|+++++||.. |+|..|+.+||.+
T Consensus 217 DE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~-----~LD~aiRsRFEeEIEF~LP~~eEr~~ 291 (368)
T COG1223 217 DELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPE-----LLDPAIRSRFEEEIEFKLPNDEERLE 291 (368)
T ss_pred hhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChh-----hcCHHHHhhhhheeeeeCCChHHHHH
Confidence 999999865542 22346788888888 456899999999999 899999999986 9999999999999
Q ss_pred HHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcc
Q psy2887 163 ILRGLQKKYEVHHGVEITDPAIVAASELSYRYIS 196 (899)
Q Consensus 163 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (899)
|++..+++++.. +... +++++..+.++.+
T Consensus 292 ile~y~k~~Plp--v~~~---~~~~~~~t~g~Sg 320 (368)
T COG1223 292 ILEYYAKKFPLP--VDAD---LRYLAAKTKGMSG 320 (368)
T ss_pred HHHHHHHhCCCc--cccC---HHHHHHHhCCCCc
Confidence 999999987643 2222 5666777666544
No 36
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=99.90 E-value=7.5e-24 Score=219.56 Aligned_cols=209 Identities=26% Similarity=0.383 Sum_probs=141.4
Q ss_pred cccccccccHHHHHHHHHHhhccCCccceeeccccCCCCceEehhHHHHHhcC---CccEEEccCChHhHHhHhhhcccC
Q psy2887 631 YGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMR---NYAKIVLGNHEIHLLDVLININKK 707 (899)
Q Consensus 631 ~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~~~~l~~~~---~~~~~v~GNHe~~~l~~~~~~~~~ 707 (899)
+.++||||+++.|.++++++++ .+.+++|++||++|+||.+.+++++++++. .++.+|+||||.+++.+..+....
T Consensus 1 ~~igDiHg~~~~l~~~l~~~~~-~~~d~li~lGD~vdrg~~~~~~l~~l~~~~~~~~~~~~l~GNHe~~~~~~~~~~~~~ 79 (225)
T cd00144 1 YVIGDIHGCLDDLLRLLEKIGF-PPNDKLIFLGDYVDRGPDSVEVIDLLLALKILPDNVILLRGNHEDMLLNFLYGFYDE 79 (225)
T ss_pred CEEeCCCCCHHHHHHHHHHhCC-CCCCEEEEECCEeCCCCCcHHHHHHHHHhcCCCCcEEEEccCchhhhhhhhcCCcch
Confidence 4689999999999999999987 456999999999999999999999999884 379999999999999877653322
Q ss_pred c----hhchHHHhhCCcChHHHHHHHhcCCceEEeC--CEEEEecccccccchHHHHHHhHHHHHHhccccHHHHHHHhc
Q psy2887 708 S----KLDTFDDILDAPDKKKLVSWLRTQPLAIYYK--KYLMIHAGVAKQWTAQQTIKLSHQVEKILRTSYWKNLFFKLY 781 (899)
Q Consensus 708 ~----~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~~--~~~~vHAg~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 781 (899)
. ................+..|+.++|+.+..+ ++++||||++|.+....... ... .-.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vHag~~~~~~~~~~~~-------~~~---------~~~ 143 (225)
T cd00144 80 DEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKVLCVHGGLSPGLPLEEQIK-------EEP---------EDQ 143 (225)
T ss_pred hhccchhHHHHHhhCHHHHHHHHHHHHhCcHheEeCCCeEEEEeCCCCCccchHHhhh-------cCc---------ccc
Confidence 1 0111222223334577889999999999987 89999999999765432110 000 000
Q ss_pred CCCCCCCCcccccccccchhhHHHHHhhhccccccCCCCccccccccCCCCCCCCCCCCCccCCCCCCCCceEEEccCCC
Q psy2887 782 NHNSINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRKTIDITVLFGHWST 861 (899)
Q Consensus 782 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~vv~GH~~~ 861 (899)
......|.+.. +....... .. ....+...+|+..+ .+.++||+||||+
T Consensus 144 ~~~~~lw~r~~----------------------~~~~~~~~--~~-----~~~~~~~~~~~~~~---~~~~~ii~GHt~~ 191 (225)
T cd00144 144 LPEDLLWSDPL----------------------ELPGGFGS--SR-----RGGGPDAVEWFLKK---NGLKLIVRGHTPV 191 (225)
T ss_pred cceeeeecCCC----------------------CCCCCCcC--CC-----CCCCHHHHHHHHHH---CCCeEEEEcCccc
Confidence 00222344321 11000000 00 00011122333332 3578999999999
Q ss_pred CCcc---cCCCeEEccccccc----CCeeEEEEe
Q psy2887 862 LGLI---MKPNIICLDTGCVW----GNKLTALCL 888 (899)
Q Consensus 862 ~~~~---~~~~~~~iDtG~v~----gg~Lta~~~ 888 (899)
.... ..+++++|||||++ ||+|+++++
T Consensus 192 ~~~~~~~~~~~~i~IDtg~~~~~~~~~~l~~~~~ 225 (225)
T cd00144 192 EEGYEFGHDGNLITIDSGCNYCGGGGNKLAALVL 225 (225)
T ss_pred cCccEEcCCCCEEEEecCCcccCCCCccEEEEeC
Confidence 9776 78899999999999 899999863
No 37
>KOG0738|consensus
Probab=99.89 E-value=1.5e-22 Score=207.42 Aligned_cols=178 Identities=22% Similarity=0.314 Sum_probs=145.2
Q ss_pred CCCCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEE
Q psy2887 9 NFYFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDII 88 (899)
Q Consensus 9 ~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~i 88 (899)
-+++..+||++||||||||.||+++|.++ +..|+.+..+.+. ++|+|++|+.++-+|+-|.. ..|++
T Consensus 241 irrPWkgvLm~GPPGTGKTlLAKAvATEc----------~tTFFNVSsstlt--SKwRGeSEKlvRlLFemARf-yAPSt 307 (491)
T KOG0738|consen 241 IRRPWKGVLMVGPPGTGKTLLAKAVATEC----------GTTFFNVSSSTLT--SKWRGESEKLVRLLFEMARF-YAPST 307 (491)
T ss_pred cccccceeeeeCCCCCcHHHHHHHHHHhh----------cCeEEEechhhhh--hhhccchHHHHHHHHHHHHH-hCCce
Confidence 46788899999999999999999999999 8899988877777 89999999999999998874 45999
Q ss_pred EEEccccccccCCCCCchhhHHHhhhhhh-----------cC-CceEEEEecChhHHHHhhhcCHHHHhcccc-ccccCC
Q psy2887 89 IFIDELHTMIGTGKVEGSIDAGNMLKPEL-----------SR-GELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEP 155 (899)
Q Consensus 89 L~iDEi~~l~~~~~~~~~~~~~~~l~~~l-----------~~-~~v~vI~at~~~~~~~~~~ld~al~~Rf~~-i~l~~p 155 (899)
+||||||+|++.+++++..++...++..| +. .-|.|+++||.+- ++|.||+|||.. |++|.|
T Consensus 308 IFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PW-----diDEAlrRRlEKRIyIPLP 382 (491)
T KOG0738|consen 308 IFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPW-----DIDEALRRRLEKRIYIPLP 382 (491)
T ss_pred eehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCc-----chHHHHHHHHhhheeeeCC
Confidence 99999999999888776666655555443 22 2366677777775 999999999996 999999
Q ss_pred CHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 156 DIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 156 ~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
+.+.|..+++..+...+.. ++-.+..+++.+++|.+ +++..++.+|..+
T Consensus 383 ~~~~R~~Li~~~l~~~~~~-----~~~~~~~lae~~eGySG-----aDI~nvCreAsm~ 431 (491)
T KOG0738|consen 383 DAEARSALIKILLRSVELD-----DPVNLEDLAERSEGYSG-----ADITNVCREASMM 431 (491)
T ss_pred CHHHHHHHHHHhhccccCC-----CCccHHHHHHHhcCCCh-----HHHHHHHHHHHHH
Confidence 9999999999888765433 33346778888888877 6777777777543
No 38
>KOG0730|consensus
Probab=99.89 E-value=5.9e-23 Score=225.10 Aligned_cols=178 Identities=26% Similarity=0.361 Sum_probs=151.5
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
..+.+||||||||||||++|+++|++. ++.++.+....+. ++|+|++|+.++++|+.|++. .|+|+|
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~----------~~nFlsvkgpEL~--sk~vGeSEr~ir~iF~kAR~~-aP~IiF 532 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEA----------GMNFLSVKGPELF--SKYVGESERAIREVFRKARQV-APCIIF 532 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhh----------cCCeeeccCHHHH--HHhcCchHHHHHHHHHHHhhc-CCeEEe
Confidence 456689999999999999999999999 8999999999998 899999999999999999855 589999
Q ss_pred EccccccccCCCCCch---hhHHHhhhhhhc----CCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCHHHH
Q psy2887 91 IDELHTMIGTGKVEGS---IDAGNMLKPELS----RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEET 160 (899)
Q Consensus 91 iDEi~~l~~~~~~~~~---~~~~~~l~~~l~----~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~~e~ 160 (899)
+||+|++...++++.+ ..+.+.|+..|. ..+|.||+|||.++ .+|+||+| ||+. |+++.|+.+.|
T Consensus 533 fDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd-----~ID~ALlRPGRlD~iiyVplPD~~aR 607 (693)
T KOG0730|consen 533 FDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPD-----MIDPALLRPGRLDRIIYVPLPDLEAR 607 (693)
T ss_pred hhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChh-----hcCHHHcCCcccceeEeecCccHHHH
Confidence 9999999988764433 335556666663 46899999999999 89999999 9996 99999999999
Q ss_pred HHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhh
Q psy2887 161 ISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIK 216 (899)
Q Consensus 161 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~ 216 (899)
.+||+..+++.+...++ .+..+++.+.+|.+ ++...++.+|+..+.
T Consensus 608 ~~Ilk~~~kkmp~~~~v-----dl~~La~~T~g~SG-----Ael~~lCq~A~~~a~ 653 (693)
T KOG0730|consen 608 LEILKQCAKKMPFSEDV-----DLEELAQATEGYSG-----AEIVAVCQEAALLAL 653 (693)
T ss_pred HHHHHHHHhcCCCCccc-----cHHHHHHHhccCCh-----HHHHHHHHHHHHHHH
Confidence 99999998875543332 56888899888877 788899998886654
No 39
>KOG0733|consensus
Probab=99.89 E-value=9.6e-23 Score=219.59 Aligned_cols=177 Identities=26% Similarity=0.379 Sum_probs=144.6
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
..+.+|||+||||||||.||+++|++. +..|+.+.-..|. .+|+|++|..++++|..|+. ..|||+|
T Consensus 543 ~~PsGvLL~GPPGCGKTLlAKAVANEa----------g~NFisVKGPELl--NkYVGESErAVR~vFqRAR~-saPCVIF 609 (802)
T KOG0733|consen 543 DAPSGVLLCGPPGCGKTLLAKAVANEA----------GANFISVKGPELL--NKYVGESERAVRQVFQRARA-SAPCVIF 609 (802)
T ss_pred CCCCceEEeCCCCccHHHHHHHHhhhc----------cCceEeecCHHHH--HHHhhhHHHHHHHHHHHhhc-CCCeEEE
Confidence 457899999999999999999999998 8899999988888 78999999999999999985 4599999
Q ss_pred EccccccccCCCCCc---hhhHHHhhhhhh----cCCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCHHHH
Q psy2887 91 IDELHTMIGTGKVEG---SIDAGNMLKPEL----SRGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEET 160 (899)
Q Consensus 91 iDEi~~l~~~~~~~~---~~~~~~~l~~~l----~~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~~e~ 160 (899)
+||+|.|++.++.++ +..+.|.|+..| ++.+|.||+|||+++ -+|||++| ||+. ++++.|+.++|
T Consensus 610 FDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPD-----iIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 610 FDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPD-----IIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred ecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCc-----ccchhhcCCCccCceeeecCCCHHHH
Confidence 999999999876654 345667777766 467899999999999 89999999 9996 89999999999
Q ss_pred HHHHHhhhhhhhcccCCCCCHH-HHHHHHhhhh--hhcccCCCchhHHHHHHHHHHh
Q psy2887 161 ISILRGLQKKYEVHHGVEITDP-AIVAASELSY--RYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 161 ~~il~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
..||+.+.+. +...++++ .++.++.... +|.+ +++..|+.+|.-.
T Consensus 685 ~~ILK~~tkn----~k~pl~~dVdl~eia~~~~c~gftG-----ADLaaLvreAsi~ 732 (802)
T KOG0733|consen 685 VAILKTITKN----TKPPLSSDVDLDEIARNTKCEGFTG-----ADLAALVREASIL 732 (802)
T ss_pred HHHHHHHhcc----CCCCCCcccCHHHHhhcccccCCch-----hhHHHHHHHHHHH
Confidence 9999999884 22223322 2455555543 5555 6777777776543
No 40
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.89 E-value=2.9e-22 Score=214.14 Aligned_cols=249 Identities=24% Similarity=0.404 Sum_probs=185.4
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHHh--hcCCCC----CCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEec
Q psy2887 380 LNIENLLCKRVVGQDEAISAVSNAIRRS--RSGLSD----AKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRID 453 (899)
Q Consensus 380 ~~l~~~l~~~v~gq~~~~~~l~~~i~~~--~~~~~~----~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~ 453 (899)
.++.+.|++.|+||+++++.+..++... +.++.. +..| .++||+||||||||++|++||+.+ +.+|+.+|
T Consensus 7 ~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~-~~ILliGp~G~GKT~LAr~LAk~l---~~~fi~vD 82 (443)
T PRK05201 7 REIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTP-KNILMIGPTGVGKTEIARRLAKLA---NAPFIKVE 82 (443)
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCC-ceEEEECCCCCCHHHHHHHHHHHh---CChheeec
Confidence 4667788999999999999999988542 222222 1223 489999999999999999999999 89999999
Q ss_pred ccccccccch----------------------------------------hhccCCC-----------------------
Q psy2887 454 MSEFIEKHSI----------------------------------------SRLIGAP----------------------- 470 (899)
Q Consensus 454 ~~~~~~~~~~----------------------------------------~~l~g~~----------------------- 470 (899)
++++....-. ..+.+..
T Consensus 83 ~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~ 162 (443)
T PRK05201 83 ATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKK 162 (443)
T ss_pred chhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHH
Confidence 9876642100 0011100
Q ss_pred ----------------C--C----cc--ccccc------------------------------------------chhhH
Q psy2887 471 ----------------P--G----YI--GYEEG------------------------------------------GYLTE 484 (899)
Q Consensus 471 ----------------~--~----~~--g~~~~------------------------------------------~~l~~ 484 (899)
. + +- |..+. .....
T Consensus 163 l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ 242 (443)
T PRK05201 163 LREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQE 242 (443)
T ss_pred HHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHH
Confidence 0 0 00 00000 00111
Q ss_pred HHHh-CCCEEEEEccccccCH------------HHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcC
Q psy2887 485 IVRR-KPYSLILLDEIEKANS------------DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKG 551 (899)
Q Consensus 485 ~~~~-~~~~vl~lDEid~~~~------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~ 551 (899)
++.. ...+|+|||||||+.. .||..||+++|...+.... .+++..+.+||++.-.....
T Consensus 243 ai~~ae~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~-~~i~T~~ILFI~~GAF~~~k------- 314 (443)
T PRK05201 243 AIERVEQNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKY-GMVKTDHILFIASGAFHVSK------- 314 (443)
T ss_pred HHHHHHcCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecc-eeEECCceeEEecCCcCCCC-------
Confidence 2333 3678999999998863 4999999999965554433 47889999999988754321
Q ss_pred cHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHH----HHHHHHHHHHHHhcCcceeecHHHHHHHHhccc
Q psy2887 552 DKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIA----NIQLNILKNKLLKMNMDLKISKAALKKISNIGF 627 (899)
Q Consensus 552 ~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~----~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 627 (899)
+ .-+-|+|++||+.++.+.+|+.+++.+|+ ...++++...++..++.+.|+++|++.+++.++
T Consensus 315 -p------------~DlIPEl~GR~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~ 381 (443)
T PRK05201 315 -P------------SDLIPELQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAY 381 (443)
T ss_pred -h------------hhccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHH
Confidence 0 12579999999999999999999999999 568888889899999999999999999998777
Q ss_pred C-----cccccccccccHHHHHHHHHHhhccCCc
Q psy2887 628 D-----LIYGARDVHGCKKSLSILLKKIHKKSPE 656 (899)
Q Consensus 628 ~-----~~~~~~di~~~~~~l~~~l~~~~~~~~~ 656 (899)
. .+.|+|-||.. ++++|..+.|+.|.
T Consensus 382 ~~N~~~~~iGAR~LrtI---~E~~L~d~~Fe~p~ 412 (443)
T PRK05201 382 QVNEKTENIGARRLHTV---MEKLLEDISFEAPD 412 (443)
T ss_pred HhcccccccchhhHHHH---HHHHHHHHhccCCC
Confidence 6 68999999999 99999999997764
No 41
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.89 E-value=1.9e-22 Score=219.80 Aligned_cols=265 Identities=17% Similarity=0.219 Sum_probs=206.4
Q ss_pred cccCcChHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecC
Q psy2887 347 LKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGP 426 (899)
Q Consensus 347 ~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~Gp 426 (899)
+.+.++.+.+..++........... +...-..-.......++|++.++.++.+.+.+... ...++|++|+
T Consensus 103 l~KP~~~~~L~~~v~ral~~~~~~~---e~~~~~~~~~~~~~~liG~S~am~~l~~~i~kvA~-------s~a~VLI~GE 172 (464)
T COG2204 103 LEKPFDLDRLLAIVERALELRELQR---ENRRSLKRAKSLGGELVGESPAMQQLRRLIAKVAP-------SDASVLITGE 172 (464)
T ss_pred eeCCCCHHHHHHHHHHHHHHhhhhh---hhhhhhhccccccCCceecCHHHHHHHHHHHHHhC-------CCCCEEEECC
Confidence 3455667777776665543211100 00000000112457899999999999999987652 2236999999
Q ss_pred CCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCC-cccccccchhhHHHHhCCCEEEEEccccccCHH
Q psy2887 427 TGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSD 505 (899)
Q Consensus 427 pGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~ 505 (899)
+||||..+|++|++..-+.+.||+.+||..+......+.+||++.| +.|.... -.+.+..+.+++||||||..++..
T Consensus 173 SGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~--r~G~fE~A~GGTLfLDEI~~mpl~ 250 (464)
T COG2204 173 SGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITR--RIGRFEQANGGTLFLDEIGEMPLE 250 (464)
T ss_pred CCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcccc--cCcceeEcCCceEEeeccccCCHH
Confidence 9999999999999999888999999999999998888999999887 3343322 234567788899999999999999
Q ss_pred HHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCe-EEEecC
Q psy2887 506 VFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRY 584 (899)
Q Consensus 506 ~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~ 584 (899)
+|..||.+|+++.+..-.|.+.-.-++.||++||.+...... .+.|+++|++|++. .|..+|
T Consensus 251 ~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~-----------------~G~FReDLyyRLnV~~i~iPp 313 (464)
T COG2204 251 LQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVA-----------------AGRFREDLYYRLNVVPLRLPP 313 (464)
T ss_pred HHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHH-----------------cCCcHHHHHhhhccceecCCc
Confidence 999999999999999877766666789999999998876555 57899999999965 666777
Q ss_pred CCH--HHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 585 LNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 585 l~~--~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
+.+ +|+.-++++++.++..+.... ...++++++..|.. |+|+.+||.+.+. +++++
T Consensus 314 LRER~EDIp~L~~hfl~~~~~~~~~~--~~~~s~~a~~~L~~--y~WPGNVREL~N~---ver~~ 371 (464)
T COG2204 314 LRERKEDIPLLAEHFLKRFAAELGRP--PKGFSPEALAALLA--YDWPGNVRELENV---VERAV 371 (464)
T ss_pred ccccchhHHHHHHHHHHHHHHHcCCC--CCCCCHHHHHHHHh--CCCChHHHHHHHH---HHHHH
Confidence 765 899999999998887765432 36899999999998 9999999998888 77666
No 42
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.88 E-value=2.7e-22 Score=216.87 Aligned_cols=243 Identities=19% Similarity=0.259 Sum_probs=197.8
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhcc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 467 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (899)
.+++|.+.++..+.+.+++.. +...++|+.|++||||..+|++|++..-+.+.||+.+||+.+......+.+|
T Consensus 245 ~~Iig~S~~m~~~~~~akr~A-------~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELF 317 (560)
T COG3829 245 DDIIGESPAMLRVLELAKRIA-------KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELF 317 (560)
T ss_pred hhhccCCHHHHHHHHHHHhhc-------CCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHh
Confidence 678999999988888877654 2233799999999999999999999999999999999999999998899999
Q ss_pred CCCCC-cccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhh
Q psy2887 468 GAPPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 546 (899)
Q Consensus 468 g~~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~ 546 (899)
|...| +.|...++ -.+.+..+.++.||||||..|+...|..||++|+++++..-.|.+.-..++.||++||.....+.
T Consensus 318 Gye~GAFTGA~~~G-K~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~~i 396 (560)
T COG3829 318 GYEKGAFTGASKGG-KPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEKMI 396 (560)
T ss_pred CcCCccccccccCC-CCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHHHHH
Confidence 99887 55554432 23445567789999999999999999999999999999987777777788999999999888666
Q ss_pred hhhcCcHHHHHHHHHHHHhhcCChhHhhccCe-EEEecCCCH--HHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHH
Q psy2887 547 EMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKIS 623 (899)
Q Consensus 547 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~ 623 (899)
+ .+.|+.+|++|++. .|..+|+.+ +|+..++..+|.++..++...- ..+++++...|.
T Consensus 397 ~-----------------~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v--~~ls~~a~~~L~ 457 (560)
T COG3829 397 A-----------------EGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNV--KGLSPDALALLL 457 (560)
T ss_pred h-----------------cCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCc--ccCCHHHHHHHH
Confidence 5 67899999999975 556666654 8999999999988877764432 348999999999
Q ss_pred hcccCcccccccccccHHHHHHHHHHhhccCCccceeeccccC
Q psy2887 624 NIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLI 666 (899)
Q Consensus 624 ~~~~~~~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~ 666 (899)
+ |.|+.++|.+.+. +++++- + ...+.+|...|+.
T Consensus 458 ~--y~WPGNVRELeNv---iER~v~---~-~~~~~~I~~~~lp 491 (560)
T COG3829 458 R--YDWPGNVRELENV---IERAVN---L-VESDGLIDADDLP 491 (560)
T ss_pred h--CCCCchHHHHHHH---HHHHHh---c-cCCcceeehhhcc
Confidence 8 9999999998888 777662 1 2334445555555
No 43
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.88 E-value=8.2e-22 Score=210.55 Aligned_cols=249 Identities=25% Similarity=0.403 Sum_probs=184.3
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHHh--hcCC----CCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEec
Q psy2887 380 LNIENLLCKRVVGQDEAISAVSNAIRRS--RSGL----SDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRID 453 (899)
Q Consensus 380 ~~l~~~l~~~v~gq~~~~~~l~~~i~~~--~~~~----~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~ 453 (899)
.++.+.|.+.|+||++|++.+..++... +..+ .....| .++||+||||||||++|++||+.+ +.+|+.++
T Consensus 4 ~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p-~~ILLiGppG~GKT~lAraLA~~l---~~~fi~vd 79 (441)
T TIGR00390 4 REIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTP-KNILMIGPTGVGKTEIARRLAKLA---NAPFIKVE 79 (441)
T ss_pred HHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccccccccccCC-ceEEEECCCCCCHHHHHHHHHHHh---CCeEEEee
Confidence 4677889999999999999999888753 2222 112233 489999999999999999999999 89999999
Q ss_pred ccccccc-----cc---hhhc--------------------------------cCCCCCcccc-----------------
Q psy2887 454 MSEFIEK-----HS---ISRL--------------------------------IGAPPGYIGY----------------- 476 (899)
Q Consensus 454 ~~~~~~~-----~~---~~~l--------------------------------~g~~~~~~g~----------------- 476 (899)
+..+... .. ...+ +.......|.
T Consensus 80 at~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~ 159 (441)
T TIGR00390 80 ATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKK 159 (441)
T ss_pred cceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHH
Confidence 8765421 10 0011 1000000000
Q ss_pred -------------------------------ccc------------------------------------------chhh
Q psy2887 477 -------------------------------EEG------------------------------------------GYLT 483 (899)
Q Consensus 477 -------------------------------~~~------------------------------------------~~l~ 483 (899)
... ....
T Consensus 160 l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~ 239 (441)
T TIGR00390 160 LREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQ 239 (441)
T ss_pred HhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHH
Confidence 000 0001
Q ss_pred HHHHh-CCCEEEEEccccccCH------------HHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhc
Q psy2887 484 EIVRR-KPYSLILLDEIEKANS------------DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEK 550 (899)
Q Consensus 484 ~~~~~-~~~~vl~lDEid~~~~------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~ 550 (899)
++++. ...+|||||||||+.. .||..||+++|...+.... .+++..+.+||++.-.....
T Consensus 240 ~a~~~~e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~-~~v~T~~ILFI~~GAF~~~k------ 312 (441)
T TIGR00390 240 EAIDAVEQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKY-GMVKTDHILFIAAGAFQLAK------ 312 (441)
T ss_pred HHHHHHHcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecc-eeEECCceeEEecCCcCCCC------
Confidence 11122 4568999999998873 4999999999965555433 47889999999988754211
Q ss_pred CcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHH----HHHHHHHHHHHHhcCcceeecHHHHHHHHhcc
Q psy2887 551 GDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIA----NIQLNILKNKLLKMNMDLKISKAALKKISNIG 626 (899)
Q Consensus 551 ~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~----~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 626 (899)
-.-+-|+|++||+.++.+.+|+.+++..|+ ...++++...++..++.+.|+++|+..+++.+
T Consensus 313 --------------p~DlIPEl~GR~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A 378 (441)
T TIGR00390 313 --------------PSDLIPELQGRFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELA 378 (441)
T ss_pred --------------hhhccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHH
Confidence 012679999999999999999999999999 56788888889999999999999999999877
Q ss_pred cC-----cccccccccccHHHHHHHHHHhhccCCc
Q psy2887 627 FD-----LIYGARDVHGCKKSLSILLKKIHKKSPE 656 (899)
Q Consensus 627 ~~-----~~~~~~di~~~~~~l~~~l~~~~~~~~~ 656 (899)
+. .+.|+|-||.. ++++|..+.|+.|.
T Consensus 379 ~~~N~~~~~iGAR~Lrti---lE~~l~d~~fe~p~ 410 (441)
T TIGR00390 379 YNVNEKTENIGARRLHTV---LERLLEDISFEAPD 410 (441)
T ss_pred HHhcccccccchhhHHHH---HHHHHHHHHhcCCC
Confidence 75 68999999999 99999999998764
No 44
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=4.4e-22 Score=199.08 Aligned_cols=277 Identities=22% Similarity=0.355 Sum_probs=204.9
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHHhhcCCCC------CCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEe
Q psy2887 379 LLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSD------AKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRI 452 (899)
Q Consensus 379 l~~l~~~l~~~v~gq~~~~~~l~~~i~~~~~~~~~------~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~ 452 (899)
..+++..|++.|+||+.+++.+.-++..+...+.. -.-..+++|+.||+|+|||.||+.+|+.| +.||...
T Consensus 52 P~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~L---nVPFaiA 128 (408)
T COG1219 52 PKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKIL---NVPFAIA 128 (408)
T ss_pred hHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHh---CCCeeec
Confidence 45788899999999999999886666332211111 11223489999999999999999999999 9999999
Q ss_pred cccccccccchhhccCCCCCcccccccchhhHHHHhC-------CCEEEEEccccccCH--------------HHHHHHH
Q psy2887 453 DMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRK-------PYSLILLDEIEKANS--------------DVFNILL 511 (899)
Q Consensus 453 ~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~-------~~~vl~lDEid~~~~--------------~~~~~Ll 511 (899)
|+..+.. .||+|++....+...+..+ ..+|++|||||+++. .+|.+||
T Consensus 129 DATtLTE-----------AGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALL 197 (408)
T COG1219 129 DATTLTE-----------AGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALL 197 (408)
T ss_pred cccchhh-----------ccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHH
Confidence 9888864 4799999888777776544 468999999998864 6999999
Q ss_pred HhhcCCcee--cCCCc--------eEecCCeEEEEecCC-Chhhhhhh-h-------cC---c--H-HHHHHHH-----H
Q psy2887 512 QILDDGRLT--DNRGR--------TINFRNTIIVMTSNL-GSDKIKEM-E-------KG---D--K-EIIKLAV-----M 561 (899)
Q Consensus 512 ~~le~g~~~--~~~g~--------~~~~~~~~iI~tsn~-~~~~~~~~-~-------~~---~--~-~~~~~~~-----~ 561 (899)
+++|.-... ...|+ .++.+|.+||+..-. |.+.+... . +. + . ......+ .
T Consensus 198 KiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepe 277 (408)
T COG1219 198 KIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPE 277 (408)
T ss_pred HHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChH
Confidence 999953322 34455 345566666555432 44444332 1 10 0 0 1111111 1
Q ss_pred HHHhhcCChhHhhccCeEEEecCCCHHHHHHHHH----HHHHHHHHHHHhcCcceeecHHHHHHHHhcccCccccccccc
Q psy2887 562 NEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN----IQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVH 637 (899)
Q Consensus 562 ~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~----~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~ 637 (899)
+.++-.+-|+|++|++.+....+++++++.+|+. ..+++++..+...++.+.|+++|+..+++.+..+.-|+|.++
T Consensus 278 DLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLR 357 (408)
T COG1219 278 DLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLR 357 (408)
T ss_pred HHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchhHHH
Confidence 4455567899999999999999999999999996 455667777777899999999999999999999999999999
Q ss_pred ccHHHHHHHHHHhhccCC----ccceeeccccCCCCceE
Q psy2887 638 GCKKSLSILLKKIHKKSP----EANFIFLGDLINKGPQS 672 (899)
Q Consensus 638 ~~~~~l~~~l~~~~~~~~----~~~li~~GD~~d~g~~~ 672 (899)
+. ++.+|-.+.|+-| ...+++..+.++....+
T Consensus 358 sI---~E~~lld~MfelPs~~~v~~v~I~~~~v~~~~~p 393 (408)
T COG1219 358 SI---IEELLLDVMFELPSLEDVEKVVITEEVVDGNAEP 393 (408)
T ss_pred HH---HHHHHHHHHhhCCCCCCceEEEEeHHHhCCCCCC
Confidence 99 8888888888655 34567777777765544
No 45
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.88 E-value=3.5e-20 Score=207.87 Aligned_cols=187 Identities=20% Similarity=0.316 Sum_probs=131.5
Q ss_pred cCCChHHHHHHHHHHHHH-----hhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccch
Q psy2887 389 RVVGQDEAISAVSNAIRR-----SRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSI 463 (899)
Q Consensus 389 ~v~gq~~~~~~l~~~i~~-----~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~ 463 (899)
+|.|.+.+++.+...... ...|+..|+ .+||+||||||||++|+++|..+ +.+++.++++.+.+.
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pk----GILL~GPpGTGKTllAkaiA~e~---~~~~~~l~~~~l~~~--- 298 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYGLPTPR----GLLLVGIQGTGKSLTAKAIANDW---QLPLLRLDVGKLFGG--- 298 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCc----eEEEECCCCCcHHHHHHHHHHHh---CCCEEEEEhHHhccc---
Confidence 455666666555543221 223443332 59999999999999999999999 899999998876543
Q ss_pred hhccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccCH------------HHHHHHHHhhcCCceecCCCceEec
Q psy2887 464 SRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS------------DVFNILLQILDDGRLTDNRGRTINF 529 (899)
Q Consensus 464 ~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~------------~~~~~Ll~~le~g~~~~~~g~~~~~ 529 (899)
|+|.++. +.++..++...+|||||||||++.. .+++.|++.|++. .
T Consensus 299 ---------~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~-----------~ 358 (489)
T CHL00195 299 ---------IVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK-----------K 358 (489)
T ss_pred ---------ccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC-----------C
Confidence 6666554 5567777778899999999997643 3566777777651 2
Q ss_pred CCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHh--hccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHh
Q psy2887 530 RNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQLNILKNKLLK 607 (899)
Q Consensus 530 ~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~ 607 (899)
.++++|+|||... .++|+++ +|||.++.++.|+.++..+|++.++.+...
T Consensus 359 ~~V~vIaTTN~~~------------------------~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~---- 410 (489)
T CHL00195 359 SPVFVVATANNID------------------------LLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRP---- 410 (489)
T ss_pred CceEEEEecCChh------------------------hCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCC----
Confidence 5678899999643 3677787 599999999999999999999998865311
Q ss_pred cCcceeecHHHHHHHHhcccCccccccccccc
Q psy2887 608 MNMDLKISKAALKKISNIGFDLIYGARDVHGC 639 (899)
Q Consensus 608 ~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~ 639 (899)
...++.-++.|++ ....|..+||...
T Consensus 411 ----~~~~~~dl~~La~--~T~GfSGAdI~~l 436 (489)
T CHL00195 411 ----KSWKKYDIKKLSK--LSNKFSGAEIEQS 436 (489)
T ss_pred ----CcccccCHHHHHh--hcCCCCHHHHHHH
Confidence 0112233455665 3445667777665
No 46
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.87 E-value=4.9e-22 Score=211.54 Aligned_cols=227 Identities=17% Similarity=0.249 Sum_probs=185.7
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhcc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 467 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (899)
..|||++.++..+.+.+..... ...++|+.|++||||..+|++|++...+...||+.+||+.+...-..+.+|
T Consensus 223 ~~iIG~S~am~~ll~~i~~VA~-------Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELF 295 (550)
T COG3604 223 GGIIGRSPAMRQLLKEIEVVAK-------SDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELF 295 (550)
T ss_pred ccceecCHHHHHHHHHHHHHhc-------CCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHh
Confidence 5789999999999999977652 223799999999999999999999999999999999999999998899999
Q ss_pred CCCCCc-ccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhh
Q psy2887 468 GAPPGY-IGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 546 (899)
Q Consensus 468 g~~~~~-~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~ 546 (899)
|+..|. .|.... -.+..+.+.++.||||||..++..+|..||.+|++|.+..-.|...-.-++.||++||.+.+...
T Consensus 296 GHeKGAFTGA~~~--r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~~~V 373 (550)
T COG3604 296 GHEKGAFTGAINT--RRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLEEMV 373 (550)
T ss_pred cccccccccchhc--cCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHHHHH
Confidence 998763 332221 12333456678999999999999999999999999999976665555568899999998877655
Q ss_pred hhhcCcHHHHHHHHHHHHhhcCChhHhhccCe-EEEecCCCH--HHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHH
Q psy2887 547 EMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKIS 623 (899)
Q Consensus 547 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~ 623 (899)
. .+.|+.+|++|++. -+.++|+.+ +|+.-++..+++++..+.... .+.++++|++.|.
T Consensus 374 ~-----------------~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~--~l~ls~~Al~~L~ 434 (550)
T COG3604 374 R-----------------DGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRA--ILSLSAEALELLS 434 (550)
T ss_pred H-----------------cCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCc--ccccCHHHHHHHH
Confidence 5 57899999999975 344555543 788888888888877665332 5899999999999
Q ss_pred hcccCcccccccccccHHHHHHHH
Q psy2887 624 NIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 624 ~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
+ |.|+.+||.+.++ +++..
T Consensus 435 ~--y~wPGNVRELen~---veRav 453 (550)
T COG3604 435 S--YEWPGNVRELENV---VERAV 453 (550)
T ss_pred c--CCCCCcHHHHHHH---HHHHH
Confidence 8 9999999999999 77776
No 47
>KOG0734|consensus
Probab=99.86 E-value=1.7e-21 Score=206.59 Aligned_cols=181 Identities=23% Similarity=0.322 Sum_probs=142.7
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
+.+.+|||+||||||||.|||++|++. +.+++...-+.+. ..++|...++++.+|..|+. ..|||+|
T Consensus 335 KLPKGVLLvGPPGTGKTlLARAvAGEA----------~VPFF~~sGSEFd--Em~VGvGArRVRdLF~aAk~-~APcIIF 401 (752)
T KOG0734|consen 335 KLPKGVLLVGPPGTGKTLLARAVAGEA----------GVPFFYASGSEFD--EMFVGVGARRVRDLFAAAKA-RAPCIIF 401 (752)
T ss_pred cCCCceEEeCCCCCchhHHHHHhhccc----------CCCeEeccccchh--hhhhcccHHHHHHHHHHHHh-cCCeEEE
Confidence 556799999999999999999999998 8888877655554 55889999999999999985 4599999
Q ss_pred EccccccccCCCCCchhhH---HHhhhhhh----cCCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCHHHH
Q psy2887 91 IDELHTMIGTGKVEGSIDA---GNMLKPEL----SRGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEET 160 (899)
Q Consensus 91 iDEi~~l~~~~~~~~~~~~---~~~l~~~l----~~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~~e~ 160 (899)
|||+|.+-.++......-+ .|.|+..| .+..|+||+|||.++ .+|+||.| ||+. |.+|.|+..-|
T Consensus 402 IDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe-----~LD~AL~RPGRFD~~v~Vp~PDv~GR 476 (752)
T KOG0734|consen 402 IDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPE-----ALDKALTRPGRFDRHVTVPLPDVRGR 476 (752)
T ss_pred EechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChh-----hhhHHhcCCCccceeEecCCCCcccH
Confidence 9999999887765544333 33444444 346899999999999 99999999 9997 99999999999
Q ss_pred HHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhhhhh
Q psy2887 161 ISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEI 219 (899)
Q Consensus 161 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~~~~ 219 (899)
.+||+.++.+.....+ ++.. .+++=+.+|. .+++.+++.+|+-++..+.
T Consensus 477 ~eIL~~yl~ki~~~~~--VD~~---iiARGT~GFs-----GAdLaNlVNqAAlkAa~dg 525 (752)
T KOG0734|consen 477 TEILKLYLSKIPLDED--VDPK---IIARGTPGFS-----GADLANLVNQAALKAAVDG 525 (752)
T ss_pred HHHHHHHHhcCCcccC--CCHh---HhccCCCCCc-----hHHHHHHHHHHHHHHHhcC
Confidence 9999999987553333 3333 3444444444 4788899999988777653
No 48
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.7e-21 Score=197.56 Aligned_cols=164 Identities=27% Similarity=0.435 Sum_probs=135.9
Q ss_pred ccCCChHHHHHHHHHHHHH--------hhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRR--------SRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 459 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~--------~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 459 (899)
.+|.|.++.++.|++++.. ...|+.+|++ +|||||||||||.||||+|+.. +..|+++.+|++..
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKG----VLLYGPPGTGKTLLAkAVA~~T---~AtFIrvvgSElVq 223 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKG----VLLYGPPGTGKTLLAKAVANQT---DATFIRVVGSELVQ 223 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCc----eEeeCCCCCcHHHHHHHHHhcc---CceEEEeccHHHHH
Confidence 6789999999999999943 2456666654 9999999999999999999998 99999999999987
Q ss_pred ccchhhccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccC-----------HHHHHHHHHhhcCCceecCCCce
Q psy2887 460 KHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRT 526 (899)
Q Consensus 460 ~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~ 526 (899)
+ |+|+... +.+|..++.+.+|||||||||.+. .++|-+++++|.+---.|
T Consensus 224 K------------YiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD----- 286 (406)
T COG1222 224 K------------YIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD----- 286 (406)
T ss_pred H------------HhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC-----
Confidence 7 7877766 889999999999999999999664 468888888776521112
Q ss_pred EecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHh--hccCeEEEecCCCHHHHHHHHHHHHHH
Q psy2887 527 INFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQLNI 600 (899)
Q Consensus 527 ~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~~~~~~i~~~~l~~ 600 (899)
+..|+-||++||... .++|+|+ +|||..|.|+.++.+...+|++-+..+
T Consensus 287 -~~~nvKVI~ATNR~D------------------------~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrk 337 (406)
T COG1222 287 -PRGNVKVIMATNRPD------------------------ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRK 337 (406)
T ss_pred -CCCCeEEEEecCCcc------------------------ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhh
Confidence 246788999999643 3778887 899999999999999999998776643
No 49
>KOG0736|consensus
Probab=99.86 E-value=4.7e-21 Score=211.90 Aligned_cols=177 Identities=25% Similarity=0.383 Sum_probs=141.9
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
+++++||||||||||||.+|+|+|-++ ...++++.-..+. ..|+|++|++++++|+.|+. ..|||+|
T Consensus 703 rkRSGILLYGPPGTGKTLlAKAVATEc----------sL~FlSVKGPELL--NMYVGqSE~NVR~VFerAR~-A~PCVIF 769 (953)
T KOG0736|consen 703 RKRSGILLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGPELL--NMYVGQSEENVREVFERARS-AAPCVIF 769 (953)
T ss_pred cccceeEEECCCCCchHHHHHHHHhhc----------eeeEEeecCHHHH--HHHhcchHHHHHHHHHHhhc-cCCeEEE
Confidence 567899999999999999999999999 7889999888888 78999999999999999984 5699999
Q ss_pred EccccccccCCCCCch-----hhHHHhhhhhhc------CCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCC
Q psy2887 91 IDELHTMIGTGKVEGS-----IDAGNMLKPELS------RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPD 156 (899)
Q Consensus 91 iDEi~~l~~~~~~~~~-----~~~~~~l~~~l~------~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~ 156 (899)
+||+|+|.++++..|. +.+...|+..|+ ...|.||||||+++ .+||+|+| ||++ +++.++.
T Consensus 770 FDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPD-----LLDpALLRPGRFDKLvyvG~~~ 844 (953)
T KOG0736|consen 770 FDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPD-----LLDPALLRPGRFDKLVYVGPNE 844 (953)
T ss_pred eccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCcc-----ccChhhcCCCccceeEEecCCc
Confidence 9999999998754332 234455555553 34799999999999 89999999 9997 8888885
Q ss_pred -HHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 157 -IEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 157 -~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
.+.+..+|+.+.+++....+++ +..+++.|.- .+..++...++..|.-.
T Consensus 845 d~esk~~vL~AlTrkFkLdedVd-----L~eiAk~cp~----~~TGADlYsLCSdA~l~ 894 (953)
T KOG0736|consen 845 DAESKLRVLEALTRKFKLDEDVD-----LVEIAKKCPP----NMTGADLYSLCSDAMLA 894 (953)
T ss_pred cHHHHHHHHHHHHHHccCCCCcC-----HHHHHhhCCc----CCchhHHHHHHHHHHHH
Confidence 6667789999999877655554 3556666633 34456778888777643
No 50
>KOG0739|consensus
Probab=99.85 E-value=3.5e-21 Score=190.35 Aligned_cols=166 Identities=21% Similarity=0.309 Sum_probs=139.6
Q ss_pred CCCCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEE
Q psy2887 9 NFYFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDII 88 (899)
Q Consensus 9 ~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~i 88 (899)
.|+..+.|||+||||||||.||+++|.+. +..++++..+.+. ++|.|++++.++++|+-|+. +.|+|
T Consensus 162 kR~PwrgiLLyGPPGTGKSYLAKAVATEA----------nSTFFSvSSSDLv--SKWmGESEkLVknLFemARe-~kPSI 228 (439)
T KOG0739|consen 162 KRKPWRGILLYGPPGTGKSYLAKAVATEA----------NSTFFSVSSSDLV--SKWMGESEKLVKNLFEMARE-NKPSI 228 (439)
T ss_pred CCCcceeEEEeCCCCCcHHHHHHHHHhhc----------CCceEEeehHHHH--HHHhccHHHHHHHHHHHHHh-cCCcE
Confidence 46778899999999999999999999998 7899999999998 89999999999999999885 45999
Q ss_pred EEEccccccccCCCCCchh---hHHHhhhhhh-----cCCceEEEEecChhHHHHhhhcCHHHHhcccc-ccccCCCHHH
Q psy2887 89 IFIDELHTMIGTGKVEGSI---DAGNMLKPEL-----SRGELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEE 159 (899)
Q Consensus 89 L~iDEi~~l~~~~~~~~~~---~~~~~l~~~l-----~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~-i~l~~p~~~e 159 (899)
+||||+|.++.++....+. .+...|+-.| ....+.|+++||-+- .+|.+++|||+. |++|.|....
T Consensus 229 IFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw-----~LDsAIRRRFekRIYIPLPe~~A 303 (439)
T KOG0739|consen 229 IFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPW-----VLDSAIRRRFEKRIYIPLPEAHA 303 (439)
T ss_pred EEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCch-----hHHHHHHHHhhcceeccCCcHHH
Confidence 9999999999877544332 2223333333 345799999999886 899999999996 9999999999
Q ss_pred HHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcc
Q psy2887 160 TISILRGLQKKYEVHHGVEITDPAIVAASELSYRYIS 196 (899)
Q Consensus 160 ~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (899)
|..+++-.+.. ....+++..+..+++.+++|.+
T Consensus 304 R~~MF~lhlG~----tp~~LT~~d~~eL~~kTeGySG 336 (439)
T KOG0739|consen 304 RARMFKLHLGD----TPHVLTEQDFKELARKTEGYSG 336 (439)
T ss_pred hhhhheeccCC----CccccchhhHHHHHhhcCCCCc
Confidence 99999877765 2345889999999999999977
No 51
>CHL00181 cbbX CbbX; Provisional
Probab=99.85 E-value=1.7e-20 Score=198.38 Aligned_cols=216 Identities=17% Similarity=0.316 Sum_probs=152.6
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHH-------hhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccC---
Q psy2887 376 REKLLNIENLLCKRVVGQDEAISAVSNAIRR-------SRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN--- 445 (899)
Q Consensus 376 ~~~l~~l~~~l~~~v~gq~~~~~~l~~~i~~-------~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~--- 445 (899)
...+.++.+.|.++++|++.++++|.+.+.. ...|+..+.. ..+++|+||||||||++|+++|+.++..
T Consensus 11 ~~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~-~~~ill~G~pGtGKT~lAr~la~~~~~~g~~ 89 (287)
T CHL00181 11 KTQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNP-GLHMSFTGSPGTGKTTVALKMADILYKLGYI 89 (287)
T ss_pred ccCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC-CceEEEECCCCCCHHHHHHHHHHHHHHcCCC
Confidence 4456788888999999999999988766421 2345544433 3379999999999999999999988542
Q ss_pred -CCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEcccccc---------CHHHHHHHHHhhc
Q psy2887 446 -EESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKA---------NSDVFNILLQILD 515 (899)
Q Consensus 446 -~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~---------~~~~~~~Ll~~le 515 (899)
..+++.++.+++... |+|.... .....++.+.++||||||++.+ .+.+++.|++.|+
T Consensus 90 ~~~~~~~v~~~~l~~~------------~~g~~~~-~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me 156 (287)
T CHL00181 90 KKGHLLTVTRDDLVGQ------------YIGHTAP-KTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVME 156 (287)
T ss_pred CCCceEEecHHHHHHH------------HhccchH-HHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHh
Confidence 345777776655332 4443332 3456666777899999999986 4678999999998
Q ss_pred CCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHH
Q psy2887 516 DGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN 595 (899)
Q Consensus 516 ~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~ 595 (899)
+. ..+++||++++... +.. .-..+|+|.+||+.+|.|+|++.+++.+|+.
T Consensus 157 ~~-----------~~~~~vI~ag~~~~--~~~-----------------~~~~np~L~sR~~~~i~F~~~t~~el~~I~~ 206 (287)
T CHL00181 157 NQ-----------RDDLVVIFAGYKDR--MDK-----------------FYESNPGLSSRIANHVDFPDYTPEELLQIAK 206 (287)
T ss_pred cC-----------CCCEEEEEeCCcHH--HHH-----------------HHhcCHHHHHhCCceEEcCCcCHHHHHHHHH
Confidence 63 25677777766321 111 1124799999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcceeecHH----HHHHHHhcccCcccc-cccccccHHHHHHHH
Q psy2887 596 IQLNILKNKLLKMNMDLKISKA----ALKKISNIGFDLIYG-ARDVHGCKKSLSILL 647 (899)
Q Consensus 596 ~~l~~~~~~~~~~~~~~~~~~~----~~~~L~~~~~~~~~~-~~di~~~~~~l~~~l 647 (899)
.++++.. ..++++ +++++.+..+.+.+| +|++.++ +++++
T Consensus 207 ~~l~~~~---------~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~---ve~~~ 251 (287)
T CHL00181 207 IMLEEQQ---------YQLTPEAEKALLDYIKKRMEQPLFANARSVRNA---LDRAR 251 (287)
T ss_pred HHHHHhc---------CCCChhHHHHHHHHHHHhCCCCCCccHHHHHHH---HHHHH
Confidence 9986532 234444 445555555555555 8888888 55554
No 52
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=99.84 E-value=7.5e-21 Score=191.76 Aligned_cols=122 Identities=23% Similarity=0.443 Sum_probs=93.4
Q ss_pred cccccccccHHHHHHHHHHhhc-------cCCccceeeccccCCCCceEehhHHHHHhcC-------CccEEEccCChHh
Q psy2887 631 YGARDVHGCKKSLSILLKKIHK-------KSPEANFIFLGDLINKGPQSLDTLRMVYSMR-------NYAKIVLGNHEIH 696 (899)
Q Consensus 631 ~~~~di~~~~~~l~~~l~~~~~-------~~~~~~li~~GD~~d~g~~~~~~~~~l~~~~-------~~~~~v~GNHe~~ 696 (899)
+.++||||++++|.++|+.+++ ..+.+.++++||++|+||.+.+|+++++++. .++.+|+||||.+
T Consensus 1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHELM 80 (208)
T ss_pred CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHH
Confidence 4689999999999999999876 3467999999999999999999999999884 3589999999999
Q ss_pred HHhHhhhcccCchhchH-----HHhhCCcChHHHHHHHhcCCceEEeCCEEEEeccccccc
Q psy2887 697 LLDVLININKKSKLDTF-----DDILDAPDKKKLVSWLRTQPLAIYYKKYLMIHAGVAKQW 752 (899)
Q Consensus 697 ~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~lp~~~~~~~~~~vHAg~~~~~ 752 (899)
++............... ..........++.+||+++|+++..++++|||||+.|.|
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lP~~~~~~~~~fvHag~~~~w 141 (208)
T cd07425 81 NLCGDFRYVHPKYFNEFGGLAMRRRELFSPGGELGRWLRSKPVIVKVNDTLFVHGGLGPLW 141 (208)
T ss_pred HHcchhccCChhHHHHHHhhhhhHHHhcCCccHHHHHHHhCCeEEEECCEEEEeCCcHHHH
Confidence 98633211111111000 011111234678999999999999999999999997654
No 53
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.83 E-value=5e-20 Score=199.02 Aligned_cols=226 Identities=17% Similarity=0.249 Sum_probs=177.5
Q ss_pred CCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCC
Q psy2887 390 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGA 469 (899)
Q Consensus 390 v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~ 469 (899)
++|++.+++.+...+.+.... ..++||+|++||||+++|++|+......+.+|+.+||+.+......+.+||.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~-------~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~ 73 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPL-------DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGH 73 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCC-------CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhcc
Confidence 468888998888888776521 2369999999999999999999998777889999999988765556678887
Q ss_pred CCC-cccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhh
Q psy2887 470 PPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEM 548 (899)
Q Consensus 470 ~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~ 548 (899)
..| +.|.... -.+.+..+.+++||||||+.+++.+|..|+.+|+++.+....+......++.+|++|+.....+..
T Consensus 74 ~~g~~~ga~~~--~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~- 150 (329)
T TIGR02974 74 EAGAFTGAQKR--HQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAA- 150 (329)
T ss_pred ccccccCcccc--cCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhh-
Confidence 655 2232211 223455667899999999999999999999999999887655555556788999999976654433
Q ss_pred hcCcHHHHHHHHHHHHhhcCChhHhhccC-eEEEecCCC--HHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhc
Q psy2887 549 EKGDKEIIKLAVMNEVKIYFRPEFINRID-DIIVFRYLN--RKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNI 625 (899)
Q Consensus 549 ~~~~~~~~~~~~~~~l~~~~~~~l~~R~~-~~i~f~~l~--~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~ 625 (899)
.+.|+++|++||+ ..|.++|+. .+|+..+++.++.++...+... +...+++++++.|..
T Consensus 151 ----------------~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~-~~~~ls~~a~~~L~~- 212 (329)
T TIGR02974 151 ----------------EGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLP-LFPGFTPQAREQLLE- 212 (329)
T ss_pred ----------------cCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCC-CCCCcCHHHHHHHHh-
Confidence 4679999999995 489999998 4899999999988765543221 114799999999998
Q ss_pred ccCcccccccccccHHHHHHHH
Q psy2887 626 GFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 626 ~~~~~~~~~di~~~~~~l~~~l 647 (899)
|+|+.+++.++++ +++++
T Consensus 213 -y~WPGNvrEL~n~---i~~~~ 230 (329)
T TIGR02974 213 -YHWPGNVRELKNV---VERSV 230 (329)
T ss_pred -CCCCchHHHHHHH---HHHHH
Confidence 9999999998888 66666
No 54
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.83 E-value=1.5e-19 Score=176.85 Aligned_cols=180 Identities=18% Similarity=0.348 Sum_probs=120.8
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhcc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 467 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (899)
++++||++++..+.-.++..+.. ..+..+++||||||+||||||+.||+.+ +.+|...+.+.+...
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r----~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~~~sg~~i~k~------- 89 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKR----GEALDHMLFYGPPGLGKTTLARIIANEL---GVNFKITSGPAIEKA------- 89 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCT----TS---EEEEESSTTSSHHHHHHHHHHHC---T--EEEEECCC--SC-------
T ss_pred HHccCcHHHHhhhHHHHHHHHhc----CCCcceEEEECCCccchhHHHHHHHhcc---CCCeEeccchhhhhH-------
Confidence 78899999999988877765421 2344589999999999999999999999 888877766544222
Q ss_pred CCCCCcccccccchhhHHHHh-CCCEEEEEccccccCHHHHHHHHHhhcCCcee--cCCC-----ceEecCCeEEEEecC
Q psy2887 468 GAPPGYIGYEEGGYLTEIVRR-KPYSLILLDEIEKANSDVFNILLQILDDGRLT--DNRG-----RTINFRNTIIVMTSN 539 (899)
Q Consensus 468 g~~~~~~g~~~~~~l~~~~~~-~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~--~~~g-----~~~~~~~~~iI~tsn 539 (899)
..+...+.. .++.|||||||+++++.+|+.|+..||+|.+. -+.| ..++..+..+|-+|+
T Consensus 90 ------------~dl~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATT 157 (233)
T PF05496_consen 90 ------------GDLAAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATT 157 (233)
T ss_dssp ------------HHHHHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEES
T ss_pred ------------HHHHHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeec
Confidence 123333322 34569999999999999999999999999874 2333 345667777888777
Q ss_pred CChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHH
Q psy2887 540 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAAL 619 (899)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~ 619 (899)
. .+.++++|.+||..+..+..|+.+++.+|+.+.. .-..+.+++++.
T Consensus 158 r------------------------~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a---------~~l~i~i~~~~~ 204 (233)
T PF05496_consen 158 R------------------------AGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSA---------RILNIEIDEDAA 204 (233)
T ss_dssp S------------------------GCCTSHCCCTTSSEEEE----THHHHHHHHHHCC---------HCTT-EE-HHHH
T ss_pred c------------------------ccccchhHHhhcceecchhcCCHHHHHHHHHHHH---------HHhCCCcCHHHH
Confidence 4 3457888999998888999999999999976543 123588999999
Q ss_pred HHHHhcc
Q psy2887 620 KKISNIG 626 (899)
Q Consensus 620 ~~L~~~~ 626 (899)
..++..+
T Consensus 205 ~~Ia~rs 211 (233)
T PF05496_consen 205 EEIARRS 211 (233)
T ss_dssp HHHHHCT
T ss_pred HHHHHhc
Confidence 9999844
No 55
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.83 E-value=1.1e-19 Score=203.77 Aligned_cols=180 Identities=20% Similarity=0.269 Sum_probs=143.0
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
..+.++||+||||||||++|+++|+++ +.+++.++++.+. ++++|+.+.+++++|..+... .|||||
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e~----------~~~~~~l~~~~l~--~~~vGese~~l~~~f~~A~~~-~P~IL~ 323 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANDW----------QLPLLRLDVGKLF--GGIVGESESRMRQMIRIAEAL-SPCILW 323 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEEhHHhc--ccccChHHHHHHHHHHHHHhc-CCcEEE
Confidence 456789999999999999999999999 8899999998887 568999999999999988754 599999
Q ss_pred EccccccccCCCCCc----hhhHHHhhhhhhc--CCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCHHHHH
Q psy2887 91 IDELHTMIGTGKVEG----SIDAGNMLKPELS--RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETI 161 (899)
Q Consensus 91 iDEi~~l~~~~~~~~----~~~~~~~l~~~l~--~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~~e~~ 161 (899)
|||+|.++......+ ...+.+.++..|. ...+.+|+|||.++ .+|++++| ||+. ++++.|+.++|.
T Consensus 324 IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~-----~Ld~allR~GRFD~~i~v~lP~~~eR~ 398 (489)
T CHL00195 324 IDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNID-----LLPLEILRKGRFDEIFFLDLPSLEERE 398 (489)
T ss_pred ehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChh-----hCCHHHhCCCcCCeEEEeCCcCHHHHH
Confidence 999999987533221 2223444455553 45689999999998 89999998 9996 999999999999
Q ss_pred HHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhh
Q psy2887 162 SILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIK 216 (899)
Q Consensus 162 ~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~ 216 (899)
+|++.++.+.... ...+..+..+++.+.+|.+ ++...++.+|+..+.
T Consensus 399 ~Il~~~l~~~~~~---~~~~~dl~~La~~T~GfSG-----AdI~~lv~eA~~~A~ 445 (489)
T CHL00195 399 KIFKIHLQKFRPK---SWKKYDIKKLSKLSNKFSG-----AEIEQSIIEAMYIAF 445 (489)
T ss_pred HHHHHHHhhcCCC---cccccCHHHHHhhcCCCCH-----HHHHHHHHHHHHHHH
Confidence 9999998874321 1234557888888888766 677777777665443
No 56
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.83 E-value=3.7e-20 Score=192.60 Aligned_cols=239 Identities=17% Similarity=0.280 Sum_probs=160.7
Q ss_pred ccCCChHHHH---HHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchh
Q psy2887 388 KRVVGQDEAI---SAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 464 (899)
Q Consensus 388 ~~v~gq~~~~---~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 464 (899)
.+++||++.+ ..|.+++.... .++++|||||||||||+|++||+.. +..|..++...-
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~~~---------l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~~sAv~~------- 84 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEAGH---------LHSMILWGPPGTGKTTLARLIAGTT---NAAFEALSAVTS------- 84 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhcCC---------CceeEEECCCCCCHHHHHHHHHHhh---CCceEEeccccc-------
Confidence 5678999988 56666666543 3379999999999999999999998 888888765432
Q ss_pred hccCCCCCcccccccchhhHHHHhC----CCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCC
Q psy2887 465 RLIGAPPGYIGYEEGGYLTEIVRRK----PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNL 540 (899)
Q Consensus 465 ~l~g~~~~~~g~~~~~~l~~~~~~~----~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~ 540 (899)
|..+-+.+.+..++. ..-|||+|||++++...|+.||..+|+|. .++|.+|+-
T Consensus 85 ----------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~-------------iilIGATTE 141 (436)
T COG2256 85 ----------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGT-------------IILIGATTE 141 (436)
T ss_pred ----------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCe-------------EEEEeccCC
Confidence 122223344333221 23599999999999999999999999865 446777765
Q ss_pred ChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHH
Q psy2887 541 GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALK 620 (899)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 620 (899)
.+. -.+++.|+||+ .++.|.|++.+++.+++.+.+......+. +..+.+++++++
T Consensus 142 NPs----------------------F~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~--~~~~~i~~~a~~ 196 (436)
T COG2256 142 NPS----------------------FELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLG--GQIIVLDEEALD 196 (436)
T ss_pred CCC----------------------eeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCC--cccccCCHHHHH
Confidence 543 13578899999 89999999999999999886644332222 233668999999
Q ss_pred HHHhcccCcccccccccccHHHHHHHHHHhhccCCccceeeccccCCC-----CceEehhHHHHHhcCCccEEEccCChH
Q psy2887 621 KISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINK-----GPQSLDTLRMVYSMRNYAKIVLGNHEI 695 (899)
Q Consensus 621 ~L~~~~~~~~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~-----g~~~~~~~~~l~~~~~~~~~v~GNHe~ 695 (899)
+|+. ...||.+..+..|+-+.....-..... +-.+.++..+ .++.-.-++++-++. ..|||-+-+
T Consensus 197 ~l~~------~s~GD~R~aLN~LE~~~~~~~~~~~~~-~~~l~~~l~~~~~~~Dk~gD~hYdliSA~h---KSvRGSD~d 266 (436)
T COG2256 197 YLVR------LSNGDARRALNLLELAALSAEPDEVLI-LELLEEILQRRSARFDKDGDAHYDLISALH---KSVRGSDPD 266 (436)
T ss_pred HHHH------hcCchHHHHHHHHHHHHHhcCCCcccC-HHHHHHHHhhhhhccCCCcchHHHHHHHHH---HhhccCCcC
Confidence 9998 556899888877777664332211000 1111111111 111112233333332 468888888
Q ss_pred hHHhHhhh
Q psy2887 696 HLLDVLIN 703 (899)
Q Consensus 696 ~~l~~~~~ 703 (899)
..|-|+.-
T Consensus 267 AALyylAR 274 (436)
T COG2256 267 AALYYLAR 274 (436)
T ss_pred HHHHHHHH
Confidence 87776643
No 57
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.83 E-value=2.1e-19 Score=190.52 Aligned_cols=216 Identities=17% Similarity=0.293 Sum_probs=152.8
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHH-------hhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccC---
Q psy2887 376 REKLLNIENLLCKRVVGQDEAISAVSNAIRR-------SRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN--- 445 (899)
Q Consensus 376 ~~~l~~l~~~l~~~v~gq~~~~~~l~~~i~~-------~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~--- 445 (899)
...+.++.+.|...++|.+.+++.|...+.. ...|+.. ..|..+++|+||||||||++|+++|+.+...
T Consensus 10 ~~~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~-~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~ 88 (284)
T TIGR02880 10 ASGITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLAS-AAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYV 88 (284)
T ss_pred hccHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCc-CCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCc
Confidence 3456677777888899999999998775432 2234433 2344479999999999999999999988543
Q ss_pred -CCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEcccccc---------CHHHHHHHHHhhc
Q psy2887 446 -EESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKA---------NSDVFNILLQILD 515 (899)
Q Consensus 446 -~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~---------~~~~~~~Ll~~le 515 (899)
..+++.++++++.. . ++|.... .+.+.+..+.++||||||++.+ ...+++.|++.|+
T Consensus 89 ~~~~~v~v~~~~l~~-----~-------~~g~~~~-~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le 155 (284)
T TIGR02880 89 RKGHLVSVTRDDLVG-----Q-------YIGHTAP-KTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME 155 (284)
T ss_pred ccceEEEecHHHHhH-----h-------hcccchH-HHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHh
Confidence 23688888765532 2 3333322 3455666777799999999977 3568899999998
Q ss_pred CCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHH
Q psy2887 516 DGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN 595 (899)
Q Consensus 516 ~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~ 595 (899)
++ ..++++|++++..... ....++|+|.+||+..|.|+||+.+|+.+|+.
T Consensus 156 ~~-----------~~~~~vI~a~~~~~~~-------------------~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~ 205 (284)
T TIGR02880 156 NQ-----------RDDLVVILAGYKDRMD-------------------SFFESNPGFSSRVAHHVDFPDYSEAELLVIAG 205 (284)
T ss_pred cC-----------CCCEEEEEeCCcHHHH-------------------HHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHH
Confidence 63 2567788877743110 11235899999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcceeecHHHHHHHHhc-----ccCcccccccccccHHHHHHHH
Q psy2887 596 IQLNILKNKLLKMNMDLKISKAALKKISNI-----GFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 596 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~-----~~~~~~~~~di~~~~~~l~~~l 647 (899)
.++++.. ..+++++.+.+... ..+|..++|.+++. +++++
T Consensus 206 ~~l~~~~---------~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~---ve~~~ 250 (284)
T TIGR02880 206 LMLKEQQ---------YRFSAEAEEAFADYIALRRTQPHFANARSIRNA---IDRAR 250 (284)
T ss_pred HHHHHhc---------cccCHHHHHHHHHHHHHhCCCCCCChHHHHHHH---HHHHH
Confidence 9886532 34667777776551 22666668887777 55544
No 58
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.82 E-value=1.2e-19 Score=188.79 Aligned_cols=170 Identities=24% Similarity=0.325 Sum_probs=137.4
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhc---CCCEE
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNN---QKDII 88 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~---~~~~i 88 (899)
.-.+++|+|||||||||||+.||+.. +..+..++. +.+| .+.++.+++++.+. +...|
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~~----------~~~f~~~sA--v~~g-------vkdlr~i~e~a~~~~~~gr~ti 107 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGTT----------NAAFEALSA--VTSG-------VKDLREIIEEARKNRLLGRRTI 107 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHhh----------CCceEEecc--cccc-------HHHHHHHHHHHHHHHhcCCceE
Confidence 44589999999999999999999988 888887653 3322 23689999988633 34789
Q ss_pred EEEccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHHHHHHHHHhhh
Q psy2887 89 IFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQ 168 (899)
Q Consensus 89 L~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~il~~~~ 168 (899)
|||||+|++.. ..+++|++.+|++.+++|+|||..+ .+.++++|++|+.++.|.+.+.++..+++++.+
T Consensus 108 LflDEIHRfnK--------~QQD~lLp~vE~G~iilIGATTENP---sF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 108 LFLDEIHRFNK--------AQQDALLPHVENGTIILIGATTENP---SFELNPALLSRARVFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred EEEehhhhcCh--------hhhhhhhhhhcCCeEEEEeccCCCC---CeeecHHHhhhhheeeeecCCHHHHHHHHHHHH
Confidence 99999999976 3445899999999999999999988 789999999999999999999999999998733
Q ss_pred hhhhc---ccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhhh
Q psy2887 169 KKYEV---HHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKI 217 (899)
Q Consensus 169 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~~ 217 (899)
..-+. ...+.+++++++.++..+.+... .+.++++.+....+.
T Consensus 177 ~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R------~aLN~LE~~~~~~~~ 222 (436)
T COG2256 177 LDEERGLGGQIIVLDEEALDYLVRLSNGDAR------RALNLLELAALSAEP 222 (436)
T ss_pred hhhhcCCCcccccCCHHHHHHHHHhcCchHH------HHHHHHHHHHHhcCC
Confidence 32221 12345899999999999988665 777888877766543
No 59
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.82 E-value=1.4e-19 Score=188.70 Aligned_cols=157 Identities=16% Similarity=0.162 Sum_probs=125.1
Q ss_pred CCCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHh----cCC
Q psy2887 10 FYFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN----NQK 85 (899)
Q Consensus 10 ~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~----~~~ 85 (899)
-+.+..++|+||||||||.+|+++|+++ +..++.++.+.+. ++|.|+.++.++++|..|.. ..+
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~el----------g~~~i~vsa~eL~--sk~vGEsEk~IR~~F~~A~~~a~~~~a 212 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKM----------GIEPIVMSAGELE--SENAGEPGKLIRQRYREAADIIKKKGK 212 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHc----------CCCeEEEEHHHhh--cCcCCcHHHHHHHHHHHHHHHhhccCC
Confidence 4667788999999999999999999999 8899999999998 78999999999999999874 357
Q ss_pred CEEEEEccccccccCCCCCch----hhHHHhhhhhhc----------------CCceEEEEecChhHHHHhhhcCHHHHh
Q psy2887 86 DIIIFIDELHTMIGTGKVEGS----IDAGNMLKPELS----------------RGELHCIGATTLNEYRQYIEKDAAFER 145 (899)
Q Consensus 86 ~~iL~iDEi~~l~~~~~~~~~----~~~~~~l~~~l~----------------~~~v~vI~at~~~~~~~~~~ld~al~~ 145 (899)
||||||||+|.+++.+.+... +-+...|+..++ ...+.||+|||.++ .+||+|+|
T Consensus 213 PcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd-----~LDpALlR 287 (413)
T PLN00020 213 MSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFS-----TLYAPLIR 287 (413)
T ss_pred CeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcc-----cCCHhHcC
Confidence 999999999999987643221 112234444432 35689999999999 89999999
Q ss_pred --ccccccccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhh
Q psy2887 146 --RFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASEL 190 (899)
Q Consensus 146 --Rf~~i~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (899)
||+.. +..|+.++|.+||+.+++.. .++...+..+++.
T Consensus 288 pGRfDk~-i~lPd~e~R~eIL~~~~r~~------~l~~~dv~~Lv~~ 327 (413)
T PLN00020 288 DGRMEKF-YWAPTREDRIGVVHGIFRDD------GVSREDVVKLVDT 327 (413)
T ss_pred CCCCCce-eCCCCHHHHHHHHHHHhccC------CCCHHHHHHHHHc
Confidence 99973 45899999999999888752 3455555544443
No 60
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.82 E-value=5.2e-20 Score=178.96 Aligned_cols=166 Identities=22% Similarity=0.329 Sum_probs=129.5
Q ss_pred hhccCCChHHHHHHHHHHHHHhhcCCCCC-CCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchh
Q psy2887 386 LCKRVVGQDEAISAVSNAIRRSRSGLSDA-KRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 464 (899)
Q Consensus 386 l~~~v~gq~~~~~~l~~~i~~~~~~~~~~-~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 464 (899)
...+|+||++|+...+-.++.....-.-. =.|. ++|||||||||||++|+++|+.. ..|++.++..++...
T Consensus 119 t~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPk-nVLFyGppGTGKTm~Akalane~---kvp~l~vkat~liGe---- 190 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPK-NVLFYGPPGTGKTMMAKALANEA---KVPLLLVKATELIGE---- 190 (368)
T ss_pred cHhhhhchHHHHHHHHHHHHHhhChHHhcccCcc-eeEEECCCCccHHHHHHHHhccc---CCceEEechHHHHHH----
Confidence 34789999999988776665433100000 0222 79999999999999999999998 899999998887655
Q ss_pred hccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccCH------------HHHHHHHHhhcCCceecCCCceEecC
Q psy2887 465 RLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS------------DVFNILLQILDDGRLTDNRGRTINFR 530 (899)
Q Consensus 465 ~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~------------~~~~~Ll~~le~g~~~~~~g~~~~~~ 530 (899)
++|.... .++++.+++..+||+||||+|.+.- ++.|+||+.|+.-. ...
T Consensus 191 --------hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~---------ene 253 (368)
T COG1223 191 --------HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK---------ENE 253 (368)
T ss_pred --------HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc---------cCC
Confidence 5554443 6788889999999999999997763 57899999998511 234
Q ss_pred CeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHH
Q psy2887 531 NTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNI 600 (899)
Q Consensus 531 ~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~ 600 (899)
.++.|++||.+. .++|...+||..-|.|.-++.+++.+|++.+++.
T Consensus 254 GVvtIaaTN~p~------------------------~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~ 299 (368)
T COG1223 254 GVVTIAATNRPE------------------------LLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKK 299 (368)
T ss_pred ceEEEeecCChh------------------------hcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHh
Confidence 677899999643 3678899999999999999999999999988854
No 61
>KOG0737|consensus
Probab=99.82 E-value=5.7e-20 Score=189.39 Aligned_cols=174 Identities=26% Similarity=0.372 Sum_probs=145.0
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
+...+|||+||||||||.+|+++|++. +..++.+.++.++ ++|.|+.++.++.+|.-+.+. .|+|+|
T Consensus 125 ~p~kGiLL~GPpG~GKTmlAKA~Akea----------ga~fInv~~s~lt--~KWfgE~eKlv~AvFslAsKl-~P~iIF 191 (386)
T KOG0737|consen 125 RPPKGILLYGPPGTGKTMLAKAIAKEA----------GANFINVSVSNLT--SKWFGEAQKLVKAVFSLASKL-QPSIIF 191 (386)
T ss_pred cCCccceecCCCCchHHHHHHHHHHHc----------CCCcceeeccccc--hhhHHHHHHHHHHHHhhhhhc-Ccceee
Confidence 467799999999999999999999999 8999999999888 589999999999999998855 499999
Q ss_pred EccccccccCCCCCchhhHHHhhhhhh----------cCCceEEEEecChhHHHHhhhcCHHHHhcccc-ccccCCCHHH
Q psy2887 91 IDELHTMIGTGKVEGSIDAGNMLKPEL----------SRGELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEE 159 (899)
Q Consensus 91 iDEi~~l~~~~~~~~~~~~~~~l~~~l----------~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~-i~l~~p~~~e 159 (899)
|||++++...+ ..+..++...++..+ .+..|.|+||||++. .+|.|+.||+.. ++++.|+..+
T Consensus 192 IDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~-----DlDeAiiRR~p~rf~V~lP~~~q 265 (386)
T KOG0737|consen 192 IDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPF-----DLDEAIIRRLPRRFHVGLPDAEQ 265 (386)
T ss_pred hhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCc-----cHHHHHHHhCcceeeeCCCchhh
Confidence 99999999888 455556666665544 233599999999998 999999999985 9999999999
Q ss_pred HHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHH
Q psy2887 160 TISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAA 213 (899)
Q Consensus 160 ~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~ 213 (899)
|.+||+-+++.-... ++-.+..++.++.||.+ .++.+++..|+-
T Consensus 266 R~kILkviLk~e~~e-----~~vD~~~iA~~t~GySG-----SDLkelC~~Aa~ 309 (386)
T KOG0737|consen 266 RRKILKVILKKEKLE-----DDVDLDEIAQMTEGYSG-----SDLKELCRLAAL 309 (386)
T ss_pred HHHHHHHHhcccccC-----cccCHHHHHHhcCCCcH-----HHHHHHHHHHhH
Confidence 999999999864433 33346788899999887 566666666653
No 62
>KOG0735|consensus
Probab=99.81 E-value=1.2e-19 Score=198.76 Aligned_cols=174 Identities=23% Similarity=0.327 Sum_probs=146.8
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
|-+.+||||||||||||.||-++|... +..++++.-..+. ++|.|.+|+.++.+|..|. +..|||||
T Consensus 699 r~~~giLLyGppGcGKT~la~a~a~~~----------~~~fisvKGPElL--~KyIGaSEq~vR~lF~rA~-~a~PCiLF 765 (952)
T KOG0735|consen 699 RLRTGILLYGPPGCGKTLLASAIASNS----------NLRFISVKGPELL--SKYIGASEQNVRDLFERAQ-SAKPCILF 765 (952)
T ss_pred ccccceEEECCCCCcHHHHHHHHHhhC----------CeeEEEecCHHHH--HHHhcccHHHHHHHHHHhh-ccCCeEEE
Confidence 566799999999999999999999988 8889999888888 7899999999999999997 55699999
Q ss_pred EccccccccCCCCC---chhhHHHhhhhhhcC----CceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCHHHH
Q psy2887 91 IDELHTMIGTGKVE---GSIDAGNMLKPELSR----GELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEET 160 (899)
Q Consensus 91 iDEi~~l~~~~~~~---~~~~~~~~l~~~l~~----~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~~e~ 160 (899)
+||+|++.+.++.. -...+.|.|+..|+. ..|.+++||++++ .+||||+| |++. ++.+.|++.+|
T Consensus 766 FDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpd-----liDpALLRpGRlD~~v~C~~P~~~eR 840 (952)
T KOG0735|consen 766 FDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPD-----LIDPALLRPGRLDKLVYCPLPDEPER 840 (952)
T ss_pred eccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCcc-----ccCHhhcCCCccceeeeCCCCCcHHH
Confidence 99999999987542 245688888888853 4789999999999 89999999 9997 99999999999
Q ss_pred HHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHH
Q psy2887 161 ISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAA 212 (899)
Q Consensus 161 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~ 212 (899)
.+|++.+...+... ++..++.++..+++|.+ ++...++..|.
T Consensus 841 l~il~~ls~s~~~~-----~~vdl~~~a~~T~g~tg-----ADlq~ll~~A~ 882 (952)
T KOG0735|consen 841 LEILQVLSNSLLKD-----TDVDLECLAQKTDGFTG-----ADLQSLLYNAQ 882 (952)
T ss_pred HHHHHHHhhccCCc-----cccchHHHhhhcCCCch-----hhHHHHHHHHH
Confidence 99999888754322 34557888888888776 56666666554
No 63
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.81 E-value=5.7e-19 Score=191.25 Aligned_cols=228 Identities=18% Similarity=0.220 Sum_probs=176.7
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhcc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 467 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (899)
..++|.+.+++.+.+.+.+.... ..+||++|++||||+++|++|+......+.+|+.+||..+........+|
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~-------~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lf 78 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPL-------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELF 78 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCC-------CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHc
Confidence 56889999999999988876521 12699999999999999999998886677899999999986544456788
Q ss_pred CCCCCc-ccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhh
Q psy2887 468 GAPPGY-IGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 546 (899)
Q Consensus 468 g~~~~~-~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~ 546 (899)
|...+. .|.... ....+..+.+++||||||+.+++.+|..|+.+++++.+....+......++.||+||+.....+.
T Consensus 79 g~~~~~~~g~~~~--~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~ 156 (326)
T PRK11608 79 GHEAGAFTGAQKR--HPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMV 156 (326)
T ss_pred cccccccCCcccc--cCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHH
Confidence 876542 232211 12344566788999999999999999999999999887755444444467899999998765443
Q ss_pred hhhcCcHHHHHHHHHHHHhhcCChhHhhccC-eEEEecCCCH--HHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHH
Q psy2887 547 EMEKGDKEIIKLAVMNEVKIYFRPEFINRID-DIIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKIS 623 (899)
Q Consensus 547 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~-~~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~ 623 (899)
. .+.|+++|++||. ..|.++|+.+ +|+..+++.++.++...+.. .+...++++++..|.
T Consensus 157 ~-----------------~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~-~~~~~~s~~al~~L~ 218 (326)
T PRK11608 157 A-----------------EGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGL-PLFPGFTERARETLL 218 (326)
T ss_pred H-----------------cCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCC-CCCCCCCHHHHHHHH
Confidence 3 5679999999994 5899999876 79999999998876544322 112468999999999
Q ss_pred hcccCcccccccccccHHHHHHHH
Q psy2887 624 NIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 624 ~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
. |+|+.+++.+.++ +++++
T Consensus 219 ~--y~WPGNvrEL~~v---l~~a~ 237 (326)
T PRK11608 219 N--YRWPGNIRELKNV---VERSV 237 (326)
T ss_pred h--CCCCcHHHHHHHH---HHHHH
Confidence 8 9999999998888 66665
No 64
>KOG0745|consensus
Probab=99.81 E-value=1.2e-18 Score=181.28 Aligned_cols=223 Identities=22% Similarity=0.387 Sum_probs=168.1
Q ss_pred eEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHH-------hCCC
Q psy2887 419 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVR-------RKPY 491 (899)
Q Consensus 419 ~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~-------~~~~ 491 (899)
.++||.||+|+|||.||+.||+.+ +.||...||..+.. .||+|++....+..++. ++..
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~l---dVPfaIcDcTtLTQ-----------AGYVGeDVEsvi~KLl~~A~~nVekAQq 292 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVL---DVPFAICDCTTLTQ-----------AGYVGEDVESVIQKLLQEAEYNVEKAQQ 292 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHh---CCCeEEecccchhh-----------cccccccHHHHHHHHHHHccCCHHHHhc
Confidence 479999999999999999999999 99999999999865 47999888766666654 3446
Q ss_pred EEEEEccccccC--------------HHHHHHHHHhhcCCceecCC----------CceEecCCeEEEEecCC-Chhhhh
Q psy2887 492 SLILLDEIEKAN--------------SDVFNILLQILDDGRLTDNR----------GRTINFRNTIIVMTSNL-GSDKIK 546 (899)
Q Consensus 492 ~vl~lDEid~~~--------------~~~~~~Ll~~le~g~~~~~~----------g~~~~~~~~~iI~tsn~-~~~~~~ 546 (899)
+|+||||+||+. ..+|..||+++|.-.+..+. ..+++.+|.+||+..-. +.+.+.
T Consensus 293 GIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I 372 (564)
T KOG0745|consen 293 GIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKII 372 (564)
T ss_pred CeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHH
Confidence 899999999887 26999999999954333211 23567788777776542 223222
Q ss_pred hh-h-----c-----------------C-cHHHHH-HHH------HHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHH
Q psy2887 547 EM-E-----K-----------------G-DKEIIK-LAV------MNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN 595 (899)
Q Consensus 547 ~~-~-----~-----------------~-~~~~~~-~~~------~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~ 595 (899)
.. . + . +..... +.+ .|.+.-.+-|||.+||+.+++|.+++++++.+|+.
T Consensus 373 ~rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLt 452 (564)
T KOG0745|consen 373 SRRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLT 452 (564)
T ss_pred HHhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHh
Confidence 11 0 0 0 000011 101 13445567899999999999999999999999996
Q ss_pred ----HHHHHHHHHHHhcCcceeecHHHHHHHHhcccCcccccccccccHHHHHHHHHHhhccCCccc
Q psy2887 596 ----IQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEAN 658 (899)
Q Consensus 596 ----~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l~~~~~~~~~~~ 658 (899)
..+.+++..+...++++.|+++|++.+++.+..+.-|+|.|++. ++++|-...|+-|-+.
T Consensus 453 EPknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsI---lE~~LleamfevPGSd 516 (564)
T KOG0745|consen 453 EPKNALGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSI---LESLLLEAMFEVPGSD 516 (564)
T ss_pred cchhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHH---HHHHHhhhcccCCCCc
Confidence 45566777777778999999999999999999999999999998 9999988888766443
No 65
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.80 E-value=3.9e-19 Score=207.01 Aligned_cols=226 Identities=19% Similarity=0.265 Sum_probs=179.2
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhcc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 467 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (899)
..++|++.+++.+.+.+..... ...++||+|++||||+++|++|+....+.+.+|+.+||+.+......+.+|
T Consensus 196 ~~liG~s~~~~~~~~~~~~~a~-------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lf 268 (534)
T TIGR01817 196 DGIIGKSPAMRQVVDQARVVAR-------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELF 268 (534)
T ss_pred CceEECCHHHHHHHHHHHHHhC-------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHc
Confidence 6788999999999998887652 123699999999999999999999987778899999999987765567788
Q ss_pred CCCCCc-ccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhh
Q psy2887 468 GAPPGY-IGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 546 (899)
Q Consensus 468 g~~~~~-~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~ 546 (899)
|...+. .|... .-...+..+.+++||||||+.+++.+|..|+.+|+++.+....+......++.+|+||+.......
T Consensus 269 g~~~~~~~~~~~--~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~ 346 (534)
T TIGR01817 269 GHEKGAFTGAIA--QRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAV 346 (534)
T ss_pred CCCCCccCCCCc--CCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHHH
Confidence 876542 22211 112234455678999999999999999999999999988765554444567889999998765433
Q ss_pred hhhcCcHHHHHHHHHHHHhhcCChhHhhccCe-EEEecCCC--HHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHH
Q psy2887 547 EMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLN--RKNILSIANIQLNILKNKLLKMNMDLKISKAALKKIS 623 (899)
Q Consensus 547 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~--~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~ 623 (899)
. .+.|+++|++||+. .|.++|+. .+|+..+++.++.++..+. +..+.+++++++.|.
T Consensus 347 ~-----------------~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~---~~~~~~s~~a~~~L~ 406 (534)
T TIGR01817 347 A-----------------KGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNREN---GRPLTITPSAIRVLM 406 (534)
T ss_pred H-----------------cCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHc---CCCCCCCHHHHHHHH
Confidence 3 56799999999964 78888998 5899999999998875543 333689999999999
Q ss_pred hcccCcccccccccccHHHHHHHH
Q psy2887 624 NIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 624 ~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
. |+|+.+++.+..+ +++++
T Consensus 407 ~--~~WPGNvrEL~~v---~~~a~ 425 (534)
T TIGR01817 407 S--CKWPGNVRELENC---LERTA 425 (534)
T ss_pred h--CCCCChHHHHHHH---HHHHH
Confidence 8 9999999988887 66665
No 66
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.80 E-value=3.1e-19 Score=172.90 Aligned_cols=162 Identities=20% Similarity=0.323 Sum_probs=126.2
Q ss_pred CCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCC
Q psy2887 390 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGA 469 (899)
Q Consensus 390 v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~ 469 (899)
++|.+.+++.+.+.++..... + .++|++|++||||+.+|++|++...+.+.||+.+||+.+........+||.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~------~-~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS------D-LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS------T-S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhCC------C-CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhcc
Confidence 578899999998888876521 1 369999999999999999999998888899999999999877777889998
Q ss_pred CCCcc-cccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhh
Q psy2887 470 PPGYI-GYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEM 548 (899)
Q Consensus 470 ~~~~~-g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~ 548 (899)
..+.. |... .-...+..+..++||||||+.+++.+|..|+++|+++.+....+......++.||++|+.+.+.+..
T Consensus 74 ~~~~~~~~~~--~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~l~~~v~- 150 (168)
T PF00158_consen 74 EKGAFTGARS--DKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKDLEELVE- 150 (168)
T ss_dssp CSSSSTTTSS--EBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-HHHHHH-
T ss_pred cccccccccc--ccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcCHHHHHH-
Confidence 76532 2222 1237888899999999999999999999999999999998766555555799999999988876655
Q ss_pred hcCcHHHHHHHHHHHHhhcCChhHhhccC
Q psy2887 549 EKGDKEIIKLAVMNEVKIYFRPEFINRID 577 (899)
Q Consensus 549 ~~~~~~~~~~~~~~~l~~~~~~~l~~R~~ 577 (899)
.+.|+++|+.|+.
T Consensus 151 ----------------~g~fr~dLy~rL~ 163 (168)
T PF00158_consen 151 ----------------QGRFREDLYYRLN 163 (168)
T ss_dssp ----------------TTSS-HHHHHHHT
T ss_pred ----------------cCCChHHHHHHhc
Confidence 5789999999995
No 67
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.80 E-value=7.1e-19 Score=199.38 Aligned_cols=225 Identities=17% Similarity=0.205 Sum_probs=173.7
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHH--------hccCCCceEEeccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSAC--------IFNNEESIIRIDMSEFIE 459 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~--------l~~~~~~~~~~~~~~~~~ 459 (899)
.+++|++.+++.+...+...... ..++|++|++||||+++|++|++. ....+.||+.+||+.+..
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~s-------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e 291 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYARS-------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAE 291 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhCC-------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCCh
Confidence 45889999999999998765421 236999999999999999999998 556678999999999987
Q ss_pred ccchhhccCCCCCc-ccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEec
Q psy2887 460 KHSISRLIGAPPGY-IGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTS 538 (899)
Q Consensus 460 ~~~~~~l~g~~~~~-~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ts 538 (899)
....+.+||...|. .|...+ .-...+..+.+++||||||+.+++..|..|+.+|+++.+....+...-..++.+|++|
T Consensus 292 ~lleseLFG~~~gaftga~~~-~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat 370 (538)
T PRK15424 292 SLLEAELFGYEEGAFTGSRRG-GRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISAT 370 (538)
T ss_pred hhHHHHhcCCccccccCcccc-ccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEec
Confidence 66677899986653 333211 1123455667889999999999999999999999999887655544445678999999
Q ss_pred CCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCe-EEEecCCCH--HHHHHHHHHHHHHHHHHHHhcCcceeec
Q psy2887 539 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKIS 615 (899)
Q Consensus 539 n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 615 (899)
|........ .+.|+++|++|++. .|.+|||.+ +|+..++..++.++.... + ..++
T Consensus 371 ~~~L~~~v~-----------------~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~---~--~~~~ 428 (538)
T PRK15424 371 HCDLEEDVR-----------------QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAAL---S--APFS 428 (538)
T ss_pred CCCHHHHHh-----------------cccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHc---C--CCCC
Confidence 987764433 46799999999964 788888876 789999999987754432 2 2356
Q ss_pred HHHH-------HHHHhcccCcccccccccccHHHHHHHH
Q psy2887 616 KAAL-------KKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 616 ~~~~-------~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
++++ +.|.. |+|+.+++.+.+. +++++
T Consensus 429 ~~a~~~~~~a~~~L~~--y~WPGNvREL~nv---ier~~ 462 (538)
T PRK15424 429 AALRQGLQQCETLLLH--YDWPGNVRELRNL---MERLA 462 (538)
T ss_pred HHHHHhhHHHHHHHHh--CCCCchHHHHHHH---HHHHH
Confidence 6655 55655 9999999998888 66655
No 68
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.80 E-value=1e-18 Score=198.57 Aligned_cols=225 Identities=18% Similarity=0.235 Sum_probs=176.9
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhcc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 467 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (899)
.+++|++.+++.+...+...... ..++|+.|++||||+++|++|++.....+.||+.+||..+......+.+|
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~~-------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLF 284 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYARS-------DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELF 284 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhCC-------CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhc
Confidence 46889999999999988765421 23699999999999999999999887778999999999987766667899
Q ss_pred CCCCCc-ccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhh
Q psy2887 468 GAPPGY-IGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 546 (899)
Q Consensus 468 g~~~~~-~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~ 546 (899)
|...|. .|.... .-...+..+.+++||||||+.+++..|..|+.+|+++.+....+......++.+|++|+.......
T Consensus 285 G~~~gaftga~~~-~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v 363 (526)
T TIGR02329 285 GYEEGAFTGARRG-GRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAV 363 (526)
T ss_pred CCccccccccccc-ccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHh
Confidence 976653 332211 123445566788999999999999999999999999988765544444567889999998776443
Q ss_pred hhhcCcHHHHHHHHHHHHhhcCChhHhhccC-eEEEecCCCH--HHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHH--
Q psy2887 547 EMEKGDKEIIKLAVMNEVKIYFRPEFINRID-DIIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKK-- 621 (899)
Q Consensus 547 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~-~~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~-- 621 (899)
. .+.|+++|++|++ ..|.+|||.+ +|+..++..++.++.... + +.++++++..
T Consensus 364 ~-----------------~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~---~--~~~~~~a~~~~~ 421 (526)
T TIGR02329 364 Q-----------------QGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAAL---R--LPDSEAAAQVLA 421 (526)
T ss_pred h-----------------hcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHc---C--CCCCHHHHHHhH
Confidence 3 4679999999996 5888999876 799999999998765432 2 4588888887
Q ss_pred -----HHhcccCcccccccccccHHHHHHHH
Q psy2887 622 -----ISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 622 -----L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
|.. |+|+.+++.+.+. +++++
T Consensus 422 ~~~~~L~~--y~WPGNvrEL~nv---ier~~ 447 (526)
T TIGR02329 422 GVADPLQR--YPWPGNVRELRNL---VERLA 447 (526)
T ss_pred HHHHHHHh--CCCCchHHHHHHH---HHHHH
Confidence 766 9999999988887 66555
No 69
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.3e-18 Score=201.31 Aligned_cols=184 Identities=25% Similarity=0.351 Sum_probs=149.3
Q ss_pred CCCCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEE
Q psy2887 9 NFYFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDII 88 (899)
Q Consensus 9 ~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~i 88 (899)
..+.+..+||+||||||||++|+++|..+ +.+++.++.+.+. ++|.|++++.++++|..|.+ ..|||
T Consensus 272 ~~~~~~giLl~GpPGtGKT~lAkava~~~----------~~~fi~v~~~~l~--sk~vGesek~ir~~F~~A~~-~~p~i 338 (494)
T COG0464 272 GLRPPKGVLLYGPPGTGKTLLAKAVALES----------RSRFISVKGSELL--SKWVGESEKNIRELFEKARK-LAPSI 338 (494)
T ss_pred CCCCCCeeEEECCCCCCHHHHHHHHHhhC----------CCeEEEeeCHHHh--ccccchHHHHHHHHHHHHHc-CCCcE
Confidence 34566689999999999999999999988 8899999999777 78999999999999999984 45999
Q ss_pred EEEccccccccCCCCCch---hhHHHhhhhhhc----CCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCHH
Q psy2887 89 IFIDELHTMIGTGKVEGS---IDAGNMLKPELS----RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIE 158 (899)
Q Consensus 89 L~iDEi~~l~~~~~~~~~---~~~~~~l~~~l~----~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~~ 158 (899)
+||||+|.+++.+..... ..+.+.++..+. ...+.+|+|||.++ .+|++++| ||+. ++++.|+.+
T Consensus 339 iFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~-----~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 339 IFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPD-----DLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred EEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCcc-----ccCHhhcccCccceEeecCCCCHH
Confidence 999999999988754332 356666666663 35689999999999 89999999 9996 999999999
Q ss_pred HHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhhhh
Q psy2887 159 ETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIE 218 (899)
Q Consensus 159 e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~~~ 218 (899)
+|.+|++..+...... ...+..++.+++.+.+|.+ .++..++.+|+.....+
T Consensus 414 ~r~~i~~~~~~~~~~~---~~~~~~~~~l~~~t~~~sg-----adi~~i~~ea~~~~~~~ 465 (494)
T COG0464 414 ERLEIFKIHLRDKKPP---LAEDVDLEELAEITEGYSG-----ADIAALVREAALEALRE 465 (494)
T ss_pred HHHHHHHHHhcccCCc---chhhhhHHHHHHHhcCCCH-----HHHHHHHHHHHHHHHHH
Confidence 9999999888753221 2345567777777766544 77888888877655433
No 70
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.79 E-value=1.7e-18 Score=199.49 Aligned_cols=227 Identities=19% Similarity=0.241 Sum_probs=179.9
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhcc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 467 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (899)
..++|++.+++.+.+.+...... ..++||+|++||||+++|++|+......+.+|+.+||+.+......+.+|
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~~-------~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lf 259 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAAS-------DLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELF 259 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhCC-------CCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhc
Confidence 57889999999999999876522 22699999999999999999999987778899999999987655556788
Q ss_pred CCCCC-cccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhh
Q psy2887 468 GAPPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 546 (899)
Q Consensus 468 g~~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~ 546 (899)
|...+ +.|.... -...+..+.+++||||||+.+++.+|..|+++++++.+....+......++.||++||.......
T Consensus 260 G~~~g~~~ga~~~--~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~ 337 (509)
T PRK05022 260 GHVKGAFTGAISN--RSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEV 337 (509)
T ss_pred CccccccCCCccc--CCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHH
Confidence 87654 2232211 12234556778999999999999999999999999988655444444568899999998776443
Q ss_pred hhhcCcHHHHHHHHHHHHhhcCChhHhhccCe-EEEecCCCH--HHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHH
Q psy2887 547 EMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKIS 623 (899)
Q Consensus 547 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~ 623 (899)
. .+.|+++|++|++. .|.++|+.+ +|+..+++.++.++..++... .+.++++++..|.
T Consensus 338 ~-----------------~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~--~~~~s~~a~~~L~ 398 (509)
T PRK05022 338 R-----------------AGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLR--SLRLSPAAQAALL 398 (509)
T ss_pred H-----------------cCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCC--CCCCCHHHHHHHH
Confidence 3 56799999999964 688888876 789999999988876554322 3679999999999
Q ss_pred hcccCcccccccccccHHHHHHHH
Q psy2887 624 NIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 624 ~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
. |+|+.+++.+.++ +++++
T Consensus 399 ~--y~WPGNvrEL~~~---i~ra~ 417 (509)
T PRK05022 399 A--YDWPGNVRELEHV---ISRAA 417 (509)
T ss_pred h--CCCCCcHHHHHHH---HHHHH
Confidence 8 9999999999888 77665
No 71
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.5e-18 Score=175.08 Aligned_cols=248 Identities=25% Similarity=0.419 Sum_probs=177.1
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHHh--hcCCCC----CCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEec
Q psy2887 380 LNIENLLCKRVVGQDEAISAVSNAIRRS--RSGLSD----AKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRID 453 (899)
Q Consensus 380 ~~l~~~l~~~v~gq~~~~~~l~~~i~~~--~~~~~~----~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~ 453 (899)
.++...|++.|+||++|++.+.-+++.. +..+.. ---|. ++|..||+|+|||.+||.||+.. +.||+.+.
T Consensus 7 reIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PK-NILMIGpTGVGKTEIARRLAkl~---~aPFiKVE 82 (444)
T COG1220 7 REIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPK-NILMIGPTGVGKTEIARRLAKLA---GAPFIKVE 82 (444)
T ss_pred HHHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCcc-ceEEECCCCCcHHHHHHHHHHHh---CCCeEEEE
Confidence 3566778899999999999998888432 222221 12333 79999999999999999999999 99999987
Q ss_pred ccccccc----------------------------------------cchhhccCCCCCccccccc--------------
Q psy2887 454 MSEFIEK----------------------------------------HSISRLIGAPPGYIGYEEG-------------- 479 (899)
Q Consensus 454 ~~~~~~~----------------------------------------~~~~~l~g~~~~~~g~~~~-------------- 479 (899)
...|..- .-+..+++..+...|..+.
T Consensus 83 ATKfTEVGYVGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~~~~~~~~~~r~~~rkk 162 (444)
T COG1220 83 ATKFTEVGYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQSENKQESSATREKFRKK 162 (444)
T ss_pred eeeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCcccccchHHHHHHHHH
Confidence 7665511 0011122222111111000
Q ss_pred ----------------------------------------------------ch--h----------------------h
Q psy2887 480 ----------------------------------------------------GY--L----------------------T 483 (899)
Q Consensus 480 ----------------------------------------------------~~--l----------------------~ 483 (899)
+. + .
T Consensus 163 Lr~GeLdd~eIeiev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KLid~e~i~~ 242 (444)
T COG1220 163 LREGELDDKEIEIEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEEIKQ 242 (444)
T ss_pred HHcCCCCccEEEEEEeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 00 0 0
Q ss_pred HHHHh-CCCEEEEEccccccCH------------HHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhc
Q psy2887 484 EIVRR-KPYSLILLDEIEKANS------------DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEK 550 (899)
Q Consensus 484 ~~~~~-~~~~vl~lDEid~~~~------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~ 550 (899)
+++.. -..+|+||||||++.. .+|.-||.++|..++....| .+...+.+||++.-.....-
T Consensus 243 eAi~~aE~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG-~VkTdHILFIasGAFh~sKP----- 316 (444)
T COG1220 243 EAIDAAEQNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYG-PVKTDHILFIASGAFHVAKP----- 316 (444)
T ss_pred HHHHHHHhcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeecccc-ccccceEEEEecCceecCCh-----
Confidence 01111 1357999999997753 58999999999766665554 45566777777765433211
Q ss_pred CcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHH----HHHHHHHHHHHhcCcceeecHHHHHHHHhcc
Q psy2887 551 GDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN----IQLNILKNKLLKMNMDLKISKAALKKISNIG 626 (899)
Q Consensus 551 ~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~----~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 626 (899)
.-+-|+|.+||+..|...+++.+++..|+. ..++++...++.+++.+.|++++++.+++.+
T Consensus 317 ---------------SDLiPELQGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA 381 (444)
T COG1220 317 ---------------SDLIPELQGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIA 381 (444)
T ss_pred ---------------hhcChhhcCCCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHH
Confidence 126789999999999999999999999995 5667778888889999999999999999876
Q ss_pred cC-----cccccccccccHHHHHHHHHHhhccCC
Q psy2887 627 FD-----LIYGARDVHGCKKSLSILLKKIHKKSP 655 (899)
Q Consensus 627 ~~-----~~~~~~di~~~~~~l~~~l~~~~~~~~ 655 (899)
|. .+.|+|-+|.. ++++|+.+.|..+
T Consensus 382 ~~vN~~~ENIGARRLhTv---lErlLediSFeA~ 412 (444)
T COG1220 382 YQVNEKTENIGARRLHTV---LERLLEDISFEAP 412 (444)
T ss_pred HHhcccccchhHHHHHHH---HHHHHHHhCccCC
Confidence 64 55889999999 9999999999766
No 72
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.79 E-value=1.9e-18 Score=198.91 Aligned_cols=227 Identities=16% Similarity=0.220 Sum_probs=177.7
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhcc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 467 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (899)
..++|.+.+++.+...+++.... ..++||+|++||||+++|++++........+|+.+||+.+......+.+|
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~~-------~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elF 276 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAML-------DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELF 276 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhCC-------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhc
Confidence 57889999998888888765421 12599999999999999999999887777899999999987765667788
Q ss_pred CCCCC-cccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhh
Q psy2887 468 GAPPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 546 (899)
Q Consensus 468 g~~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~ 546 (899)
|..+| +.|..++ ....+..+.+++||||||+.+++..|..|+++++++.+....+......++.||+||+.+...+.
T Consensus 277 G~~~~~~~~~~~~--~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~ 354 (520)
T PRK10820 277 GHAPGAYPNALEG--KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELV 354 (520)
T ss_pred CCCCCCcCCcccC--CCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHH
Confidence 87654 3332222 12345556678999999999999999999999999987765444334467889999998876554
Q ss_pred hhhcCcHHHHHHHHHHHHhhcCChhHhhccC-eEEEecCCCH--HHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHH
Q psy2887 547 EMEKGDKEIIKLAVMNEVKIYFRPEFINRID-DIIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKIS 623 (899)
Q Consensus 547 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~-~~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~ 623 (899)
. .+.|+++|++|+. ..|.++|+.+ +|+..+++.++.++..+.... ...+++++++.|.
T Consensus 355 ~-----------------~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~--~~~ls~~a~~~L~ 415 (520)
T PRK10820 355 Q-----------------KGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVP--RPKLAADLNTVLT 415 (520)
T ss_pred H-----------------cCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCC--CCCcCHHHHHHHh
Confidence 4 5679999999986 4788888876 689999999988765543221 2579999999998
Q ss_pred hcccCcccccccccccHHHHHHHH
Q psy2887 624 NIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 624 ~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
. |+|+.+++.+.+. +.+++
T Consensus 416 ~--y~WPGNvreL~nv---l~~a~ 434 (520)
T PRK10820 416 R--YGWPGNVRQLKNA---IYRAL 434 (520)
T ss_pred c--CCCCCHHHHHHHH---HHHHH
Confidence 8 9999999998888 77766
No 73
>KOG0740|consensus
Probab=99.78 E-value=1.2e-18 Score=186.98 Aligned_cols=176 Identities=25% Similarity=0.330 Sum_probs=146.1
Q ss_pred CCCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEE
Q psy2887 10 FYFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIII 89 (899)
Q Consensus 10 ~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL 89 (899)
|.....+||.||||+|||.|++++|.+. +..++.+..+.+. ++|+|+.++.++.+|.-|+ ..+|+|+
T Consensus 183 r~p~rglLLfGPpgtGKtmL~~aiAsE~----------~atff~iSassLt--sK~~Ge~eK~vralf~vAr-~~qPsvi 249 (428)
T KOG0740|consen 183 REPVRGLLLFGPPGTGKTMLAKAIATES----------GATFFNISASSLT--SKYVGESEKLVRALFKVAR-SLQPSVI 249 (428)
T ss_pred ccccchhheecCCCCchHHHHHHHHhhh----------cceEeeccHHHhh--hhccChHHHHHHHHHHHHH-hcCCeEE
Confidence 3445589999999999999999999999 8899999988888 8999999999999999887 4569999
Q ss_pred EEccccccccCCCCCchhh-----HHHhhhhhh-----cCCceEEEEecChhHHHHhhhcCHHHHhcccc-ccccCCCHH
Q psy2887 90 FIDELHTMIGTGKVEGSID-----AGNMLKPEL-----SRGELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIE 158 (899)
Q Consensus 90 ~iDEi~~l~~~~~~~~~~~-----~~~~l~~~l-----~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~-i~l~~p~~~ 158 (899)
||||+|.++..+.. ...+ ..++|.+.. ....|++|+|||.+. ++|.+++|||.. ++++.|+.+
T Consensus 250 fidEidslls~Rs~-~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~-----e~Dea~~Rrf~kr~yiplPd~e 323 (428)
T KOG0740|consen 250 FIDEIDSLLSKRSD-NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPW-----ELDEAARRRFVKRLYIPLPDYE 323 (428)
T ss_pred EechhHHHHhhcCC-cccccchhhhhHHHhhhccccCCCCCeEEEEecCCCch-----HHHHHHHHHhhceeeecCCCHH
Confidence 99999999987733 2222 223333333 245899999999998 999999999995 889999999
Q ss_pred HHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHH
Q psy2887 159 ETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAA 213 (899)
Q Consensus 159 e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~ 213 (899)
.|..++++++.+. ...+.+..+..+++++++|.+ .+..+++.+|+.
T Consensus 324 tr~~~~~~ll~~~----~~~l~~~d~~~l~~~Tegysg-----sdi~~l~kea~~ 369 (428)
T KOG0740|consen 324 TRSLLWKQLLKEQ----PNGLSDLDISLLAKVTEGYSG-----SDITALCKEAAM 369 (428)
T ss_pred HHHHHHHHHHHhC----CCCccHHHHHHHHHHhcCccc-----ccHHHHHHHhhc
Confidence 9999999999873 456888999999999999877 566666666653
No 74
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.78 E-value=5.2e-18 Score=178.94 Aligned_cols=192 Identities=19% Similarity=0.254 Sum_probs=143.9
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
....|++|+|||||||||+|+++|+.+.... .+....++.++++.+. +.+.|+....++++|+.+. ++|||
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~---~~~~~~~v~~~~~~l~--~~~~g~~~~~~~~~~~~a~----~~VL~ 110 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMN---VLSKGHLIEVERADLV--GEYIGHTAQKTREVIKKAL----GGVLF 110 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhcC---cccCCceEEecHHHhh--hhhccchHHHHHHHHHhcc----CCEEE
Confidence 4456899999999999999999999875432 1234567888887776 5688998888899988763 46999
Q ss_pred EccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhcccc-ccccCCCHHHHHHHHHhh
Q psy2887 91 IDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGL 167 (899)
Q Consensus 91 iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~-i~l~~p~~~e~~~il~~~ 167 (899)
|||+|.|..........++.+.|...++. +.+++|+++++.++..+..++|+|.+||.. |.|++++.+++.+|++.+
T Consensus 111 IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~ 190 (261)
T TIGR02881 111 IDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERM 190 (261)
T ss_pred EechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHH
Confidence 99999997533222234567788888864 567888888887777777899999999975 999999999999999988
Q ss_pred hhhhhcccCCCCCHHHHHHHHhhhhhhcc----cCCCchhHHHHHHHHHHhh
Q psy2887 168 QKKYEVHHGVEITDPAIVAASELSYRYIS----DRFMPDKAIDLIDEAAAKI 215 (899)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~p~~~~~ll~~a~~~~ 215 (899)
+.. .+..++++++..+++...+... .......+.++++.|..+.
T Consensus 191 ~~~----~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~~ 238 (261)
T TIGR02881 191 VKE----REYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRRQ 238 (261)
T ss_pred HHH----cCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHH
Confidence 876 4567999999888776654321 1122334556666655443
No 75
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.78 E-value=5.9e-18 Score=187.78 Aligned_cols=178 Identities=24% Similarity=0.309 Sum_probs=137.8
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
..+.++||+||||||||++|+++|+.+ +.+++.++++.+. ..+.|+.+..++.+|..+.. ..|+|||
T Consensus 163 ~~p~gvLL~GppGtGKT~lAkaia~~~----------~~~~i~v~~~~l~--~~~~g~~~~~i~~~f~~a~~-~~p~Ilf 229 (389)
T PRK03992 163 EPPKGVLLYGPPGTGKTLLAKAVAHET----------NATFIRVVGSELV--QKFIGEGARLVRELFELARE-KAPSIIF 229 (389)
T ss_pred CCCCceEEECCCCCChHHHHHHHHHHh----------CCCEEEeehHHHh--HhhccchHHHHHHHHHHHHh-cCCeEEE
Confidence 456689999999999999999999998 7788989888876 56889989899999998874 4589999
Q ss_pred EccccccccCCCCC---chhhHHHhhhhhh---c----CCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCH
Q psy2887 91 IDELHTMIGTGKVE---GSIDAGNMLKPEL---S----RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDI 157 (899)
Q Consensus 91 iDEi~~l~~~~~~~---~~~~~~~~l~~~l---~----~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~ 157 (899)
|||+|.++..+... +..+....+..++ . .+.+.||+|||.++ .+|++++| ||+. |.|+.|+.
T Consensus 230 iDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~-----~ld~allRpgRfd~~I~v~~P~~ 304 (389)
T PRK03992 230 IDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRID-----ILDPAILRPGRFDRIIEVPLPDE 304 (389)
T ss_pred EechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChh-----hCCHHHcCCccCceEEEECCCCH
Confidence 99999998765332 1223333344433 2 35799999999998 89999998 9986 99999999
Q ss_pred HHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhh
Q psy2887 158 EETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIK 216 (899)
Q Consensus 158 ~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~ 216 (899)
++|.+||+.++.......+ ..+..++..+.+|.+ ++...++.+|+..+.
T Consensus 305 ~~R~~Il~~~~~~~~~~~~-----~~~~~la~~t~g~sg-----adl~~l~~eA~~~a~ 353 (389)
T PRK03992 305 EGRLEILKIHTRKMNLADD-----VDLEELAELTEGASG-----ADLKAICTEAGMFAI 353 (389)
T ss_pred HHHHHHHHHHhccCCCCCc-----CCHHHHHHHcCCCCH-----HHHHHHHHHHHHHHH
Confidence 9999999988776443222 235667777766554 778888888776543
No 76
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.77 E-value=7.7e-18 Score=185.37 Aligned_cols=178 Identities=19% Similarity=0.248 Sum_probs=136.1
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
..+.++||+||||||||++|+++|+.+ +.+++.+..+.+. .++.|+.+..++++|..+.. ..|+|||
T Consensus 177 ~~pkgvLL~GppGTGKT~LAkalA~~l----------~~~fi~i~~s~l~--~k~~ge~~~~lr~lf~~A~~-~~P~ILf 243 (398)
T PTZ00454 177 DPPRGVLLYGPPGTGKTMLAKAVAHHT----------TATFIRVVGSEFV--QKYLGEGPRMVRDVFRLARE-NAPSIIF 243 (398)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEehHHHH--HHhcchhHHHHHHHHHHHHh-cCCeEEE
Confidence 356789999999999999999999988 7788888777665 56889999999999998874 4699999
Q ss_pred EccccccccCCCCC---chhhHHHhhhhh---hc----CCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCH
Q psy2887 91 IDELHTMIGTGKVE---GSIDAGNMLKPE---LS----RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDI 157 (899)
Q Consensus 91 iDEi~~l~~~~~~~---~~~~~~~~l~~~---l~----~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~ 157 (899)
|||+|.++..+... ........+..+ ++ ...+.+|++||.++ .+||+++| ||+. |+|+.|+.
T Consensus 244 IDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d-----~LDpAllR~GRfd~~I~~~~P~~ 318 (398)
T PTZ00454 244 IDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD-----TLDPALLRPGRLDRKIEFPLPDR 318 (398)
T ss_pred EECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCch-----hCCHHHcCCCcccEEEEeCCcCH
Confidence 99999998654221 112233333333 32 35789999999998 99999998 9986 99999999
Q ss_pred HHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhh
Q psy2887 158 EETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIK 216 (899)
Q Consensus 158 ~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~ 216 (899)
++|..|++.++.+.....+ ..+..++..+.+|. ++++..++.+|+..+.
T Consensus 319 ~~R~~Il~~~~~~~~l~~d-----vd~~~la~~t~g~s-----gaDI~~l~~eA~~~A~ 367 (398)
T PTZ00454 319 RQKRLIFQTITSKMNLSEE-----VDLEDFVSRPEKIS-----AADIAAICQEAGMQAV 367 (398)
T ss_pred HHHHHHHHHHHhcCCCCcc-----cCHHHHHHHcCCCC-----HHHHHHHHHHHHHHHH
Confidence 9999999988876443222 23456666666654 4788888888875543
No 77
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.77 E-value=3.6e-18 Score=183.19 Aligned_cols=228 Identities=17% Similarity=0.253 Sum_probs=176.7
Q ss_pred hhccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhcc-CCCceEEecccccccccchh
Q psy2887 386 LCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFN-NEESIIRIDMSEFIEKHSIS 464 (899)
Q Consensus 386 l~~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~-~~~~~~~~~~~~~~~~~~~~ 464 (899)
....++|.+...+.+.+.++... |.+ .++|+.|++||||+.+|++|+...-+ .+.||+.+||+.+......+
T Consensus 76 ~~~~LIG~~~~~~~~~eqik~~a-----p~~--~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~ 148 (403)
T COG1221 76 ALDDLIGESPSLQELREQIKAYA-----PSG--LPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEA 148 (403)
T ss_pred hhhhhhccCHHHHHHHHHHHhhC-----CCC--CcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHH
Confidence 34678899999999999888732 222 26999999999999999999966655 48899999999999988888
Q ss_pred hccCCCCC-cccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChh
Q psy2887 465 RLIGAPPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSD 543 (899)
Q Consensus 465 ~l~g~~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~ 543 (899)
.+||+..| +.|...+ -...+..+.+++||+|||..+++..|..|+++||+|.+..-.+......++.+|++||....
T Consensus 149 eLFG~~kGaftGa~~~--k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~ 226 (403)
T COG1221 149 ELFGHEKGAFTGAQGG--KAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLE 226 (403)
T ss_pred HHhccccceeecccCC--cCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHH
Confidence 89998877 5553222 34566778889999999999999999999999999999977777777789999999997655
Q ss_pred hhhhhhcCcHHHHHHHHHHHHhhcCChhHhh-ccCeEEEecCCCH--HHHHHHHHHHHHHHHHHHHhcCccee-ecHHHH
Q psy2887 544 KIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN-RIDDIIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLK-ISKAAL 619 (899)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~-R~~~~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~~~-~~~~~~ 619 (899)
.... .+ .+|++ |+..+|..+|+.+ +|+..+++.++..+..+. +..+. .++++.
T Consensus 227 ~~~~-----------------~g---~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l---~~~~~~~~~~a~ 283 (403)
T COG1221 227 EAVL-----------------AG---ADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRL---GLPLSVDSPEAL 283 (403)
T ss_pred HHHH-----------------hh---cchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHc---CCCCCCCCHHHH
Confidence 2111 11 36777 5567899999876 666666677766555443 43333 346899
Q ss_pred HHHHhcccCcccccccccccHHHHHHHHHHh
Q psy2887 620 KKISNIGFDLIYGARDVHGCKKSLSILLKKI 650 (899)
Q Consensus 620 ~~L~~~~~~~~~~~~di~~~~~~l~~~l~~~ 650 (899)
..|.. |+|+.++|.+.+. +++.+...
T Consensus 284 ~~L~~--y~~pGNirELkN~---Ve~~~~~~ 309 (403)
T COG1221 284 RALLA--YDWPGNIRELKNL---VERAVAQA 309 (403)
T ss_pred HHHHh--CCCCCcHHHHHHH---HHHHHHHh
Confidence 99987 9999999998888 77766544
No 78
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.77 E-value=1.1e-17 Score=176.58 Aligned_cols=184 Identities=18% Similarity=0.334 Sum_probs=129.9
Q ss_pred ccCCChHHHHHHHHHHHHH-------hhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhcc----CCCceEEecccc
Q psy2887 388 KRVVGQDEAISAVSNAIRR-------SRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFN----NEESIIRIDMSE 456 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~-------~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~----~~~~~~~~~~~~ 456 (899)
..++|++.+++.|...+.. ...|+..+..+ .+++|+||||||||++|+++|+.++. ...+++.+++++
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~-~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQV-LHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCc-ceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 3478999999888765432 23455444443 48999999999999999999998743 234666666665
Q ss_pred cccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEccccccC--------HHHHHHHHHhhcCCceecCCCceEe
Q psy2887 457 FIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKAN--------SDVFNILLQILDDGRLTDNRGRTIN 528 (899)
Q Consensus 457 ~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~--------~~~~~~Ll~~le~g~~~~~~g~~~~ 528 (899)
+... |+|... ..+.+.+..+.++||||||++.+. ...++.|++.|++.
T Consensus 85 l~~~------------~~g~~~-~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~----------- 140 (261)
T TIGR02881 85 LVGE------------YIGHTA-QKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDN----------- 140 (261)
T ss_pred hhhh------------hccchH-HHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhcc-----------
Confidence 4332 444432 234566677778899999999875 45789999999873
Q ss_pred cCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy2887 529 FRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKM 608 (899)
Q Consensus 529 ~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~ 608 (899)
..+.++|++++... +.. ...++|+|.+||+..|.|++++.+++.+|++..+.. .
T Consensus 141 ~~~~~vila~~~~~--~~~-----------------~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~-------~ 194 (261)
T TIGR02881 141 RNEFVLILAGYSDE--MDY-----------------FLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE-------R 194 (261)
T ss_pred CCCEEEEecCCcch--hHH-----------------HHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH-------c
Confidence 24455666654311 100 123678999999989999999999999999887743 2
Q ss_pred CcceeecHHHHHHHHh
Q psy2887 609 NMDLKISKAALKKISN 624 (899)
Q Consensus 609 ~~~~~~~~~~~~~L~~ 624 (899)
+ ..++++++.+|.+
T Consensus 195 ~--~~l~~~a~~~l~~ 208 (261)
T TIGR02881 195 E--YKLTEEAKWKLRE 208 (261)
T ss_pred C--CccCHHHHHHHHH
Confidence 2 5688999988865
No 79
>CHL00181 cbbX CbbX; Provisional
Probab=99.77 E-value=1.7e-17 Score=175.47 Aligned_cols=192 Identities=17% Similarity=0.220 Sum_probs=140.4
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
....|+||+||||||||++|+++|+.+....+ +...+++.++...+. +.+.|+.+.+...+++.+. ++|||
T Consensus 57 ~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~---~~~~~~~~v~~~~l~--~~~~g~~~~~~~~~l~~a~----ggVLf 127 (287)
T CHL00181 57 NPGLHMSFTGSPGTGKTTVALKMADILYKLGY---IKKGHLLTVTRDDLV--GQYIGHTAPKTKEVLKKAM----GGVLF 127 (287)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHHcCC---CCCCceEEecHHHHH--HHHhccchHHHHHHHHHcc----CCEEE
Confidence 34567999999999999999999998754321 224568888877776 4577877777788888763 45999
Q ss_pred EccccccccCCC-CCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhcccc-ccccCCCHHHHHHHHHh
Q psy2887 91 IDELHTMIGTGK-VEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRG 166 (899)
Q Consensus 91 iDEi~~l~~~~~-~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~-i~l~~p~~~e~~~il~~ 166 (899)
|||++.|...+. ...+.++.+.|...|+. +.++||++++...+..++..+|+|.+||+. |.|++|+.+++.+|++.
T Consensus 128 IDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~ 207 (287)
T CHL00181 128 IDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKI 207 (287)
T ss_pred EEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHH
Confidence 999999965322 22345677888888864 578999999988888888899999999985 99999999999999999
Q ss_pred hhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCC--chhHHHHHHHHHHhh
Q psy2887 167 LQKKYEVHHGVEITDPAIVAASELSYRYISDRFM--PDKAIDLIDEAAAKI 215 (899)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~ll~~a~~~~ 215 (899)
++++ .+..+++++...+.....+-.....+ ...+.++++.+....
T Consensus 208 ~l~~----~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~ 254 (287)
T CHL00181 208 MLEE----QQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMRQ 254 (287)
T ss_pred HHHH----hcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHH
Confidence 9887 34567777776666654332221111 234455555554433
No 80
>KOG0731|consensus
Probab=99.76 E-value=3.6e-18 Score=194.11 Aligned_cols=179 Identities=22% Similarity=0.316 Sum_probs=139.8
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
+-+.++||+||||||||.||+|+|.+. +.+++++..+.+. ..++|....+++.+|..++. ..|||+|
T Consensus 342 KiPkGvLL~GPPGTGKTLLAKAiAGEA----------gVPF~svSGSEFv--E~~~g~~asrvr~lf~~ar~-~aP~iif 408 (774)
T KOG0731|consen 342 KIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSVSGSEFV--EMFVGVGASRVRDLFPLARK-NAPSIIF 408 (774)
T ss_pred cCcCceEEECCCCCcHHHHHHHHhccc----------CCceeeechHHHH--HHhcccchHHHHHHHHHhhc-cCCeEEE
Confidence 456789999999999999999999999 9999999888877 44556667789999999985 4599999
Q ss_pred EccccccccCCCC----CchhhHH---Hhhhhhhc----CCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCC
Q psy2887 91 IDELHTMIGTGKV----EGSIDAG---NMLKPELS----RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPD 156 (899)
Q Consensus 91 iDEi~~l~~~~~~----~~~~~~~---~~l~~~l~----~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~ 156 (899)
|||+|.+...+.+ .+..+.. |.|+..|+ ...++++++||.++ -+|++|+| ||+. |.++.|+
T Consensus 409 ideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d-----~ld~allrpGRfdr~i~i~~p~ 483 (774)
T KOG0731|consen 409 IDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPD-----ILDPALLRPGRFDRQIQIDLPD 483 (774)
T ss_pred ecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCcc-----ccCHHhcCCCccccceeccCCc
Confidence 9999999887631 2233333 44444442 45799999999999 89999999 9997 9999999
Q ss_pred HHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhh
Q psy2887 157 IEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIK 216 (899)
Q Consensus 157 ~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~ 216 (899)
..+|.+|++.++..... ..++..+..++.++.++.+ +++..++.+|+....
T Consensus 484 ~~~r~~i~~~h~~~~~~----~~e~~dl~~~a~~t~gf~g-----adl~n~~neaa~~a~ 534 (774)
T KOG0731|consen 484 VKGRASILKVHLRKKKL----DDEDVDLSKLASLTPGFSG-----ADLANLCNEAALLAA 534 (774)
T ss_pred hhhhHHHHHHHhhccCC----CcchhhHHHHHhcCCCCcH-----HHHHhhhhHHHHHHH
Confidence 99999999988876332 2234444447777766554 788888888775544
No 81
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.76 E-value=6e-18 Score=203.84 Aligned_cols=177 Identities=24% Similarity=0.336 Sum_probs=141.0
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
+.+.++||+||||||||++|+++|+++ +.+++.+..+.+. ++|+|+.++.++.+|..+... .|+|||
T Consensus 485 ~~~~giLL~GppGtGKT~lakalA~e~----------~~~fi~v~~~~l~--~~~vGese~~i~~~f~~A~~~-~p~iif 551 (733)
T TIGR01243 485 RPPKGVLLFGPPGTGKTLLAKAVATES----------GANFIAVRGPEIL--SKWVGESEKAIREIFRKARQA-APAIIF 551 (733)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEehHHHh--hcccCcHHHHHHHHHHHHHhc-CCEEEE
Confidence 456689999999999999999999998 8889999988887 679999999999999999854 599999
Q ss_pred EccccccccCCCCCc----hhhHHHhhhhhhc----CCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCHHH
Q psy2887 91 IDELHTMIGTGKVEG----SIDAGNMLKPELS----RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEE 159 (899)
Q Consensus 91 iDEi~~l~~~~~~~~----~~~~~~~l~~~l~----~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~~e 159 (899)
|||+|.|++.+.... ...+.+.|+..|+ ...++||+|||.++ .+|++++| ||+. |+++.|+.++
T Consensus 552 iDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~-----~ld~allRpgRfd~~i~v~~Pd~~~ 626 (733)
T TIGR01243 552 FDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPD-----ILDPALLRPGRFDRLILVPPPDEEA 626 (733)
T ss_pred EEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChh-----hCCHhhcCCCccceEEEeCCcCHHH
Confidence 999999998664322 2335555655553 46799999999999 89999998 9996 9999999999
Q ss_pred HHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhh
Q psy2887 160 TISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 215 (899)
Q Consensus 160 ~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~ 215 (899)
|.+||+....+.... ++..+..+++.+.+|.+ ++...++.+|+..+
T Consensus 627 R~~i~~~~~~~~~~~-----~~~~l~~la~~t~g~sg-----adi~~~~~~A~~~a 672 (733)
T TIGR01243 627 RKEIFKIHTRSMPLA-----EDVDLEELAEMTEGYTG-----ADIEAVCREAAMAA 672 (733)
T ss_pred HHHHHHHHhcCCCCC-----ccCCHHHHHHHcCCCCH-----HHHHHHHHHHHHHH
Confidence 999998776553322 22346778888877665 56666666666443
No 82
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.76 E-value=2.8e-17 Score=183.93 Aligned_cols=153 Identities=26% Similarity=0.348 Sum_probs=114.7
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhc---CCCE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNN---QKDI 87 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~---~~~~ 87 (899)
..+.++||+||||||||++|+++|+.+.............++.+....+. .++.|++++.++.+|..+... +.|+
T Consensus 214 ~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl--~kyvGete~~ir~iF~~Ar~~a~~g~p~ 291 (512)
T TIGR03689 214 KPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELL--NKYVGETERQIRLIFQRAREKASDGRPV 291 (512)
T ss_pred CCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhc--ccccchHHHHHHHHHHHHHHHhhcCCCc
Confidence 35678999999999999999999998843211000011223334444444 568999999999999988642 4699
Q ss_pred EEEEccccccccCCCCCchh----hHHHhhhhhhc----CCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCC
Q psy2887 88 IIFIDELHTMIGTGKVEGSI----DAGNMLKPELS----RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPD 156 (899)
Q Consensus 88 iL~iDEi~~l~~~~~~~~~~----~~~~~l~~~l~----~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~ 156 (899)
|+||||+|.++.++....+. ...+.|+..|+ .+.+++|+|||.++ .+||+++| ||+. |+|+.|+
T Consensus 292 IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d-----~LDpALlRpGRfD~~I~~~~Pd 366 (512)
T TIGR03689 292 IVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNRED-----MIDPAILRPGRLDVKIRIERPD 366 (512)
T ss_pred eEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChh-----hCCHhhcCccccceEEEeCCCC
Confidence 99999999999876543222 23445555553 36799999999999 89999999 9996 9999999
Q ss_pred HHHHHHHHHhhhhh
Q psy2887 157 IEETISILRGLQKK 170 (899)
Q Consensus 157 ~~e~~~il~~~~~~ 170 (899)
.+++.+||+.++..
T Consensus 367 ~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 367 AEAAADIFSKYLTD 380 (512)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999988753
No 83
>KOG0727|consensus
Probab=99.76 E-value=3.1e-18 Score=165.63 Aligned_cols=151 Identities=21% Similarity=0.319 Sum_probs=124.3
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
..+.++|||||||||||.|++++|+.. ...++.+.-+.+. .+|.|+....++.+|.-++. +.|+|+|
T Consensus 187 dpprgvllygppg~gktml~kava~~t----------~a~firvvgsefv--qkylgegprmvrdvfrlake-napsiif 253 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHT----------TAAFIRVVGSEFV--QKYLGEGPRMVRDVFRLAKE-NAPSIIF 253 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhcc----------chheeeeccHHHH--HHHhccCcHHHHHHHHHHhc-cCCcEEE
Confidence 356689999999999999999999876 6677878777776 78999999999999999885 4599999
Q ss_pred EccccccccCCC---CCchhhHHHhhhhhhc-------CCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCH
Q psy2887 91 IDELHTMIGTGK---VEGSIDAGNMLKPELS-------RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDI 157 (899)
Q Consensus 91 iDEi~~l~~~~~---~~~~~~~~~~l~~~l~-------~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~ 157 (899)
|||+|.+..++- .+...++..+|..++. .-++.+|.+||..+ .+||+|+| |++. |+||.|+.
T Consensus 254 ideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnrad-----tldpallrpgrldrkiefplpdr 328 (408)
T KOG0727|consen 254 IDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRAD-----TLDPALLRPGRLDRKIEFPLPDR 328 (408)
T ss_pred eehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccc-----ccCHhhcCCccccccccCCCCch
Confidence 999999986542 2334556667766662 35799999999999 89999999 9996 99999999
Q ss_pred HHHHHHHHhhhhhhhcccCCCC
Q psy2887 158 EETISILRGLQKKYEVHHGVEI 179 (899)
Q Consensus 158 ~e~~~il~~~~~~~~~~~~~~~ 179 (899)
.+++-++..+..+......+.+
T Consensus 329 rqkrlvf~titskm~ls~~vdl 350 (408)
T KOG0727|consen 329 RQKRLVFSTITSKMNLSDEVDL 350 (408)
T ss_pred hhhhhhHHhhhhcccCCcccCH
Confidence 9999999999888665555444
No 84
>KOG0728|consensus
Probab=99.76 E-value=4.1e-18 Score=164.63 Aligned_cols=149 Identities=23% Similarity=0.359 Sum_probs=124.4
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEEc
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFID 92 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~iD 92 (899)
+.++|||||||||||.||+++|... .|.++.+.-+.+. .+|.|+....++++|--++. ..|+|+|+|
T Consensus 181 PKGvlLygppgtGktLlaraVahht----------~c~firvsgselv--qk~igegsrmvrelfvmare-hapsiifmd 247 (404)
T KOG0728|consen 181 PKGVLLYGPPGTGKTLLARAVAHHT----------DCTFIRVSGSELV--QKYIGEGSRMVRELFVMARE-HAPSIIFMD 247 (404)
T ss_pred CcceEEecCCCCchhHHHHHHHhhc----------ceEEEEechHHHH--HHHhhhhHHHHHHHHHHHHh-cCCceEeee
Confidence 4589999999999999999999887 8899999888887 78999999999999998875 459999999
Q ss_pred cccccccCCCC---CchhhHHHhhhhhh-------cCCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCHHH
Q psy2887 93 ELHTMIGTGKV---EGSIDAGNMLKPEL-------SRGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEE 159 (899)
Q Consensus 93 Ei~~l~~~~~~---~~~~~~~~~l~~~l-------~~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~~e 159 (899)
|+|++.+++.. .+..+++..++.++ +..++.+|.+||..+ -+||+|+| |++. |+||+|+.+.
T Consensus 248 eidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnrid-----ild~allrpgridrkiefp~p~e~a 322 (404)
T KOG0728|consen 248 EIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRID-----ILDPALLRPGRIDRKIEFPPPNEEA 322 (404)
T ss_pred cccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccc-----cccHhhcCCCcccccccCCCCCHHH
Confidence 99999876532 23344555555554 356899999999999 79999999 9996 9999999999
Q ss_pred HHHHHHhhhhhhhcccCCCC
Q psy2887 160 TISILRGLQKKYEVHHGVEI 179 (899)
Q Consensus 160 ~~~il~~~~~~~~~~~~~~~ 179 (899)
|.+||+....+.....++.+
T Consensus 323 r~~ilkihsrkmnl~rgi~l 342 (404)
T KOG0728|consen 323 RLDILKIHSRKMNLTRGINL 342 (404)
T ss_pred HHHHHHHhhhhhchhcccCH
Confidence 99999988777666555543
No 85
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.76 E-value=4.4e-17 Score=195.14 Aligned_cols=227 Identities=16% Similarity=0.229 Sum_probs=177.8
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhcc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 467 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (899)
..++|++.+++.+.+.+...... ..++|++|++|||||++|++|+......+.+|+.+||..+......+.+|
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~-------~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQS-------DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCC-------CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhc
Confidence 46889999999998888765421 12699999999999999999999987778999999999887655556788
Q ss_pred CCCCCc-ccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhh
Q psy2887 468 GAPPGY-IGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 546 (899)
Q Consensus 468 g~~~~~-~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~ 546 (899)
|+..+. .|... .-...+..+.+++||||||+.+++.+|..|+.+|+++.+....+......++.+|++|+.....+.
T Consensus 449 g~~~~~~~g~~~--~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~ 526 (686)
T PRK15429 449 GHERGAFTGASA--QRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMV 526 (686)
T ss_pred Cccccccccccc--chhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHH
Confidence 875542 22111 122345666779999999999999999999999999988765554444567899999998776443
Q ss_pred hhhcCcHHHHHHHHHHHHhhcCChhHhhccCe-EEEecCCCH--HHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHH
Q psy2887 547 EMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKIS 623 (899)
Q Consensus 547 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~ 623 (899)
. .+.|+++|++|+.. .|.++|+.+ +|+..+++.++.++..++... ...+++++++.|.
T Consensus 527 ~-----------------~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~--~~~~s~~al~~L~ 587 (686)
T PRK15429 527 A-----------------DREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRN--IDSIPAETLRTLS 587 (686)
T ss_pred H-----------------cCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCC--CCCcCHHHHHHHH
Confidence 3 56799999999965 688888875 789999999888876544222 1358999999998
Q ss_pred hcccCcccccccccccHHHHHHHH
Q psy2887 624 NIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 624 ~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
. |+|+.+++.+.++ +++++
T Consensus 588 ~--y~WPGNvrEL~~~---i~~a~ 606 (686)
T PRK15429 588 N--MEWPGNVRELENV---IERAV 606 (686)
T ss_pred h--CCCCCcHHHHHHH---HHHHH
Confidence 8 9999999998888 77666
No 86
>KOG0989|consensus
Probab=99.76 E-value=8.9e-18 Score=168.54 Aligned_cols=189 Identities=22% Similarity=0.337 Sum_probs=134.2
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCC---ceEEecccccccccchh
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE---SIIRIDMSEFIEKHSIS 464 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~---~~~~~~~~~~~~~~~~~ 464 (899)
.++.||+.++..|.+++.+ +. . +++|||||||||||+.|+++|+++++... .+...+.+......-.
T Consensus 36 de~~gQe~vV~~L~~a~~~-~~------l--p~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvv- 105 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR-RI------L--PHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVV- 105 (346)
T ss_pred HhhcchHHHHHHHHHHHhh-cC------C--ceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccch-
Confidence 5678999999999999987 31 2 37999999999999999999999976221 1112222222111100
Q ss_pred hccCCCCCccccccc--chhhHHH------HhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEE
Q psy2887 465 RLIGAPPGYIGYEEG--GYLTEIV------RRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVM 536 (899)
Q Consensus 465 ~l~g~~~~~~g~~~~--~~l~~~~------~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ 536 (899)
..... ..+.... ...++.|++|||.|.|..++|++|.+.||+ ....++||+
T Consensus 106 ----------r~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~-----------~s~~trFiL 164 (346)
T KOG0989|consen 106 ----------REKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMED-----------FSRTTRFIL 164 (346)
T ss_pred ----------hhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhc-----------cccceEEEE
Confidence 00000 0011111 112358999999999999999999999997 357889999
Q ss_pred ecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecH
Q psy2887 537 TSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISK 616 (899)
Q Consensus 537 tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 616 (899)
.||.-.. +.+.+.+|| ..+.|+++..+++.+.++... ..++ +.+++
T Consensus 165 Icnylsr------------------------ii~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia-------~~E~--v~~d~ 210 (346)
T KOG0989|consen 165 ICNYLSR------------------------IIRPLVSRC-QKFRFKKLKDEDIVDRLEKIA-------SKEG--VDIDD 210 (346)
T ss_pred EcCChhh------------------------CChHHHhhH-HHhcCCCcchHHHHHHHHHHH-------HHhC--CCCCH
Confidence 9996443 556699999 899999999999887765554 3455 88999
Q ss_pred HHHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 617 AALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 617 ~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
++++++++ ..-||++...-.|+.+-
T Consensus 211 ~al~~I~~------~S~GdLR~Ait~Lqsls 235 (346)
T KOG0989|consen 211 DALKLIAK------ISDGDLRRAITTLQSLS 235 (346)
T ss_pred HHHHHHHH------HcCCcHHHHHHHHHHhh
Confidence 99999998 55688888755555443
No 87
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.76 E-value=1.4e-17 Score=191.62 Aligned_cols=177 Identities=23% Similarity=0.342 Sum_probs=137.5
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
..+.++||+||||||||++|+++|+.+ +.+++.++.+.+. ..+.|..++.++.+|+.+.. ..|+|||
T Consensus 86 ~~~~giLL~GppGtGKT~la~alA~~~----------~~~~~~i~~~~~~--~~~~g~~~~~l~~~f~~a~~-~~p~Il~ 152 (495)
T TIGR01241 86 KIPKGVLLVGPPGTGKTLLAKAVAGEA----------GVPFFSISGSDFV--EMFVGVGASRVRDLFEQAKK-NAPCIIF 152 (495)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHc----------CCCeeeccHHHHH--HHHhcccHHHHHHHHHHHHh-cCCCEEE
Confidence 445689999999999999999999988 7888888877765 45678888899999999874 4589999
Q ss_pred EccccccccCCCCC---ch---hhHHHhhhhhh----cCCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCH
Q psy2887 91 IDELHTMIGTGKVE---GS---IDAGNMLKPEL----SRGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDI 157 (899)
Q Consensus 91 iDEi~~l~~~~~~~---~~---~~~~~~l~~~l----~~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~ 157 (899)
|||+|.+...+... +. ....+.|+..| +++.++||+|||.++ .+||+++| ||+. |.++.|+.
T Consensus 153 iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~-----~ld~al~r~gRfd~~i~i~~Pd~ 227 (495)
T TIGR01241 153 IDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPD-----VLDPALLRPGRFDRQVVVDLPDI 227 (495)
T ss_pred EechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChh-----hcCHHHhcCCcceEEEEcCCCCH
Confidence 99999998765431 11 23344454444 345799999999998 89999998 9986 99999999
Q ss_pred HHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhh
Q psy2887 158 EETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 215 (899)
Q Consensus 158 ~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~ 215 (899)
++|.+|++.++...... .+..+..++..+.+|.+ +++..++.+|+..+
T Consensus 228 ~~R~~il~~~l~~~~~~-----~~~~l~~la~~t~G~sg-----adl~~l~~eA~~~a 275 (495)
T TIGR01241 228 KGREEILKVHAKNKKLA-----PDVDLKAVARRTPGFSG-----ADLANLLNEAALLA 275 (495)
T ss_pred HHHHHHHHHHHhcCCCC-----cchhHHHHHHhCCCCCH-----HHHHHHHHHHHHHH
Confidence 99999999888653211 33446677777766554 67888888776543
No 88
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.76 E-value=7.9e-18 Score=204.05 Aligned_cols=180 Identities=14% Similarity=0.119 Sum_probs=134.3
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCc-------------c-------------
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGT-------------K------------- 64 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~-------------~------------- 64 (899)
+.+.+|||+||||||||.||+++|.+. +.+++.+..+.+..+. +
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es----------~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~ 1697 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNS----------YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDL 1697 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhc----------CCceEEEEHHHHhhccccccccccccccccccccccccccccc
Confidence 556799999999999999999999998 8889999888876321 0
Q ss_pred -------------cCchH--HHHHHHHHHHHHhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhc-------CCce
Q psy2887 65 -------------YRGEF--EDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS-------RGEL 122 (899)
Q Consensus 65 -------------~~g~~--~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~-------~~~v 122 (899)
+.+.. ..+++.+|+.|++. .|||+||||+|.|..+... ....+.|+..|. ...|
T Consensus 1698 ~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~-SPCIIFIDEIDaL~~~ds~---~ltL~qLLneLDg~~~~~s~~~V 1773 (2281)
T CHL00206 1698 DTELLTMMNALTMDMMPKIDRFYITLQFELAKAM-SPCIIWIPNIHDLNVNESN---YLSLGLLVNSLSRDCERCSTRNI 1773 (2281)
T ss_pred chhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHC-CCeEEEEEchhhcCCCccc---eehHHHHHHHhccccccCCCCCE
Confidence 01222 23488899999865 5999999999999875311 112445555553 2469
Q ss_pred EEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCHHHHHHHHHhhhhhhhcccCCCCCH--HHHHHHHhhhhhhccc
Q psy2887 123 HCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITD--PAIVAASELSYRYISD 197 (899)
Q Consensus 123 ~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 197 (899)
+||||||.++ .+||||+| ||+. |.++.|+..+|.+++..++.. .++.+.+ ..+..++..+.||.+
T Consensus 1774 IVIAATNRPD-----~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~t----kg~~L~~~~vdl~~LA~~T~GfSG- 1843 (2281)
T CHL00206 1774 LVIASTHIPQ-----KVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYT----RGFHLEKKMFHTNGFGSITMGSNA- 1843 (2281)
T ss_pred EEEEeCCCcc-----cCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhh----cCCCCCcccccHHHHHHhCCCCCH-
Confidence 9999999999 99999999 9996 999999999999988755432 1222322 236777888877765
Q ss_pred CCCchhHHHHHHHHHHhhhhh
Q psy2887 198 RFMPDKAIDLIDEAAAKIKIE 218 (899)
Q Consensus 198 ~~~p~~~~~ll~~a~~~~~~~ 218 (899)
+++..++.+|+..+..+
T Consensus 1844 ----ADLanLvNEAaliAirq 1860 (2281)
T CHL00206 1844 ----RDLVALTNEALSISITQ 1860 (2281)
T ss_pred ----HHHHHHHHHHHHHHHHc
Confidence 78889999988766544
No 89
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.75 E-value=1.6e-17 Score=168.66 Aligned_cols=225 Identities=17% Similarity=0.262 Sum_probs=182.8
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhcc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 467 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (899)
+.+++++..++.+....++...- . .++|+.|.+||||-.+|++-+....+...||+.+||..+.+....+.+|
T Consensus 204 ~~~v~~S~~mk~~v~qA~k~Aml----D---APLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElF 276 (511)
T COG3283 204 EQIVAVSPKMKHVVEQAQKLAML----D---APLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELF 276 (511)
T ss_pred HHHhhccHHHHHHHHHHHHhhcc----C---CCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHh
Confidence 45667777777776655544311 1 2599999999999999999999998889999999999999999999999
Q ss_pred CCCCCcccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhh
Q psy2887 468 GAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKE 547 (899)
Q Consensus 468 g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~ 547 (899)
|..+|-.| -...++.+.++.+|+|||..++|..|..||.++.+|.|..-.+..--.-++.+|+||..+...+.+
T Consensus 277 G~apg~~g------k~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~ 350 (511)
T COG3283 277 GHAPGDEG------KKGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQ 350 (511)
T ss_pred cCCCCCCC------ccchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHHh
Confidence 99887222 224556677889999999999999999999999999999765544445689999999998877766
Q ss_pred hhcCcHHHHHHHHHHHHhhcCChhHhhccCe-EEEecCCCH--HHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHh
Q psy2887 548 MEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKISN 624 (899)
Q Consensus 548 ~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 624 (899)
++.|+.+|+.|++. .+.++|+.+ +++..+++.++.++.+.+.-- ...++++.+.+|..
T Consensus 351 -----------------~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p--~pkl~~~~~~~L~~ 411 (511)
T COG3283 351 -----------------KGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVP--RPKLAADLLTVLTR 411 (511)
T ss_pred -----------------cCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCC--CCccCHHHHHHHHH
Confidence 67899999999975 777788765 788999999998877665332 47899999999988
Q ss_pred cccCcccccccccccHHHHHHHHHH
Q psy2887 625 IGFDLIYGARDVHGCKKSLSILLKK 649 (899)
Q Consensus 625 ~~~~~~~~~~di~~~~~~l~~~l~~ 649 (899)
|.|+.++|.+.+. +.+.+..
T Consensus 412 --y~WpGNVRqL~N~---iyRA~s~ 431 (511)
T COG3283 412 --YAWPGNVRQLKNA---IYRALTL 431 (511)
T ss_pred --cCCCccHHHHHHH---HHHHHHH
Confidence 9999999888777 7777733
No 90
>KOG0652|consensus
Probab=99.75 E-value=1.2e-17 Score=162.24 Aligned_cols=164 Identities=22% Similarity=0.276 Sum_probs=127.9
Q ss_pred CCCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEE
Q psy2887 10 FYFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIII 89 (899)
Q Consensus 10 ~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL 89 (899)
-+.+.++|+|||||||||.+|++.|... +..++.+....+. ..+.|+..+.++..|.-++. ..|+|+
T Consensus 202 i~pPKGvLmYGPPGTGKTlmARAcAaqT----------~aTFLKLAgPQLV--QMfIGdGAkLVRDAFaLAKE-kaP~II 268 (424)
T KOG0652|consen 202 IRPPKGVLMYGPPGTGKTLMARACAAQT----------NATFLKLAGPQLV--QMFIGDGAKLVRDAFALAKE-KAPTII 268 (424)
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHHhc----------cchHHHhcchHHH--hhhhcchHHHHHHHHHHhhc-cCCeEE
Confidence 3677799999999999999999998876 4455544433443 45889999999999998875 459999
Q ss_pred EEccccccccCCCC---CchhhHHHhhhhhh-------cCCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCC
Q psy2887 90 FIDELHTMIGTGKV---EGSIDAGNMLKPEL-------SRGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPD 156 (899)
Q Consensus 90 ~iDEi~~l~~~~~~---~~~~~~~~~l~~~l-------~~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~ 156 (899)
||||+|.+..++-. .|..++...++.++ ....+.+|++||+.+ -+||+|+| |++. |+||.|+
T Consensus 269 FIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvD-----iLDPALlRSGRLDRKIEfP~Pn 343 (424)
T KOG0652|consen 269 FIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVD-----ILDPALLRSGRLDRKIEFPHPN 343 (424)
T ss_pred EEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeeccccc-----ccCHHHhhcccccccccCCCCC
Confidence 99999999865432 34556666665555 345799999999999 79999999 9996 9999999
Q ss_pred HHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcc
Q psy2887 157 IEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYIS 196 (899)
Q Consensus 157 ~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (899)
.+.|..|++....+...+.++.+ +.+++.++.|.+
T Consensus 344 e~aRarIlQIHsRKMnv~~DvNf-----eELaRsTddFNG 378 (424)
T KOG0652|consen 344 EEARARILQIHSRKMNVSDDVNF-----EELARSTDDFNG 378 (424)
T ss_pred hHHHHHHHHHhhhhcCCCCCCCH-----HHHhhcccccCc
Confidence 99999999988877665555554 556666666554
No 91
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.75 E-value=1.3e-17 Score=198.66 Aligned_cols=224 Identities=15% Similarity=0.205 Sum_probs=175.1
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhcc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 467 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (899)
..++|.+.++..+...+...... ..++||+|++||||+++|++|++.....+.+|+.+||+.+......+.+|
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~-------~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elf 397 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKS-------SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFL 397 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCc-------CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhc
Confidence 56889999998888877765421 12599999999999999999999987778899999999987655567788
Q ss_pred CCCCCcccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhh
Q psy2887 468 GAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKE 547 (899)
Q Consensus 468 g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~ 547 (899)
|...+. ... .....+..+.+++||||||+.+++.+|..|+++|+++.++..++......++.+|+||+.+...+..
T Consensus 398 g~~~~~---~~~-~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~ 473 (638)
T PRK11388 398 GSDRTD---SEN-GRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVE 473 (638)
T ss_pred CCCCcC---ccC-CCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHh
Confidence 865321 111 1122344567789999999999999999999999999887655544334578899999987764443
Q ss_pred hhcCcHHHHHHHHHHHHhhcCChhHhhccCe-EEEecCCCH--HHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHh
Q psy2887 548 MEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKISN 624 (899)
Q Consensus 548 ~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 624 (899)
.+.|+++|++|+.. .|.++||.+ +|+..+++.++.++.... +..+.+++++++.|..
T Consensus 474 -----------------~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~---~~~~~~s~~a~~~L~~ 533 (638)
T PRK11388 474 -----------------QNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRF---STRLKIDDDALARLVS 533 (638)
T ss_pred -----------------cCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHh---CCCCCcCHHHHHHHHc
Confidence 46799999999964 788888876 689999999998876543 2236799999999998
Q ss_pred cccCcccccccccccHHHHHHHH
Q psy2887 625 IGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 625 ~~~~~~~~~~di~~~~~~l~~~l 647 (899)
|+|+.+++.+.+. +++++
T Consensus 534 --y~WPGNvreL~~~---l~~~~ 551 (638)
T PRK11388 534 --YRWPGNDFELRSV---IENLA 551 (638)
T ss_pred --CCCCChHHHHHHH---HHHHH
Confidence 9999889888887 66655
No 92
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.75 E-value=4.1e-18 Score=166.86 Aligned_cols=159 Identities=24% Similarity=0.321 Sum_probs=111.3
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEE
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFI 91 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~i 91 (899)
.-.|+||+||||+||||||+.+|+++ +..+...+...+. ..+ .+..++..+. .+.||||
T Consensus 49 ~l~h~lf~GPPG~GKTTLA~IIA~e~----------~~~~~~~sg~~i~----k~~----dl~~il~~l~---~~~ILFI 107 (233)
T PF05496_consen 49 ALDHMLFYGPPGLGKTTLARIIANEL----------GVNFKITSGPAIE----KAG----DLAAILTNLK---EGDILFI 107 (233)
T ss_dssp ---EEEEESSTTSSHHHHHHHHHHHC----------T--EEEEECCC------SCH----HHHHHHHT-----TT-EEEE
T ss_pred CcceEEEECCCccchhHHHHHHHhcc----------CCCeEeccchhhh----hHH----HHHHHHHhcC---CCcEEEE
Confidence 34589999999999999999999999 7777765432221 112 3455555543 3569999
Q ss_pred ccccccccCCCCCchhhHHHhhhhhhcCC--------------------ceEEEEecChhHHHHhhhcCHHHHhcccc-c
Q psy2887 92 DELHTMIGTGKVEGSIDAGNMLKPELSRG--------------------ELHCIGATTLNEYRQYIEKDAAFERRFQK-I 150 (899)
Q Consensus 92 DEi~~l~~~~~~~~~~~~~~~l~~~l~~~--------------------~v~vI~at~~~~~~~~~~ld~al~~Rf~~-i 150 (899)
||+|++.+ ...+.|.+.||.+ ++.+|+|||... .+.++|++||.. .
T Consensus 108 DEIHRlnk--------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g-----~ls~pLrdRFgi~~ 174 (233)
T PF05496_consen 108 DEIHRLNK--------AQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAG-----LLSSPLRDRFGIVL 174 (233)
T ss_dssp CTCCC--H--------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGC-----CTSHCCCTTSSEEE
T ss_pred echhhccH--------HHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeecccc-----ccchhHHhhcceec
Confidence 99999975 5667899999754 357899999998 899999999997 5
Q ss_pred cccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 151 LVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 151 ~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
.+..++.+|..+|++.-... .++.+++++...++..|.+ .|.-|.+++..+...
T Consensus 175 ~l~~Y~~~el~~Iv~r~a~~----l~i~i~~~~~~~Ia~rsrG------tPRiAnrll~rvrD~ 228 (233)
T PF05496_consen 175 RLEFYSEEELAKIVKRSARI----LNIEIDEDAAEEIARRSRG------TPRIANRLLRRVRDF 228 (233)
T ss_dssp E----THHHHHHHHHHCCHC----TT-EE-HHHHHHHHHCTTT------SHHHHHHHHHHHCCC
T ss_pred chhcCCHHHHHHHHHHHHHH----hCCCcCHHHHHHHHHhcCC------ChHHHHHHHHHHHHH
Confidence 79999999999999876665 5678999999999988754 677888888765433
No 93
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.74 E-value=2.3e-17 Score=182.36 Aligned_cols=177 Identities=22% Similarity=0.259 Sum_probs=133.7
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
..+.++||+||||||||++|+++|+.+ +.+++.+..+.+. .++.|+.+..++.+|..+.. ..|+|||
T Consensus 215 ~~p~gVLL~GPPGTGKT~LAraIA~el----------~~~fi~V~~seL~--~k~~Ge~~~~vr~lF~~A~~-~~P~ILf 281 (438)
T PTZ00361 215 KPPKGVILYGPPGTGKTLLAKAVANET----------SATFLRVVGSELI--QKYLGDGPKLVRELFRVAEE-NAPSIVF 281 (438)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh----------CCCEEEEecchhh--hhhcchHHHHHHHHHHHHHh-CCCcEEe
Confidence 355689999999999999999999988 6678888777765 56889999899999998874 4699999
Q ss_pred EccccccccCCCC---CchhhHHHhhhhhh-------cCCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCH
Q psy2887 91 IDELHTMIGTGKV---EGSIDAGNMLKPEL-------SRGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDI 157 (899)
Q Consensus 91 iDEi~~l~~~~~~---~~~~~~~~~l~~~l-------~~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~ 157 (899)
|||+|.++..+.. .+..++...+..++ ....+.||+|||..+ .+|++++| ||+. |+|+.|+.
T Consensus 282 IDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d-----~LDpaLlRpGRfd~~I~~~~Pd~ 356 (438)
T PTZ00361 282 IDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIE-----SLDPALIRPGRIDRKIEFPNPDE 356 (438)
T ss_pred HHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChH-----HhhHHhccCCeeEEEEEeCCCCH
Confidence 9999999875532 22233333333333 356799999999998 88999987 9986 99999999
Q ss_pred HHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhh
Q psy2887 158 EETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 215 (899)
Q Consensus 158 ~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~ 215 (899)
++|.+||+.++.+.....+ ..+..++..+.+|.+ +++..++.+|+..+
T Consensus 357 ~~R~~Il~~~~~k~~l~~d-----vdl~~la~~t~g~sg-----AdI~~i~~eA~~~A 404 (438)
T PTZ00361 357 KTKRRIFEIHTSKMTLAED-----VDLEEFIMAKDELSG-----ADIKAICTEAGLLA 404 (438)
T ss_pred HHHHHHHHHHHhcCCCCcC-----cCHHHHHHhcCCCCH-----HHHHHHHHHHHHHH
Confidence 9999999988776432222 234556666655544 66667777766544
No 94
>KOG0734|consensus
Probab=99.74 E-value=1.3e-17 Score=177.47 Aligned_cols=164 Identities=21% Similarity=0.306 Sum_probs=129.0
Q ss_pred HhhccCCChHHHHHHHHHHHHHhh-------cCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccc
Q psy2887 385 LLCKRVVGQDEAISAVSNAIRRSR-------SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF 457 (899)
Q Consensus 385 ~l~~~v~gq~~~~~~l~~~i~~~~-------~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~ 457 (899)
.-.++|-|.++|+..+.+.+...+ .|-+-|+ .+||+||||||||.|||++|.+. +.||+...+++|
T Consensus 301 v~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPK----GVLLvGPPGTGKTlLARAvAGEA---~VPFF~~sGSEF 373 (752)
T KOG0734|consen 301 VTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPK----GVLLVGPPGTGKTLLARAVAGEA---GVPFFYASGSEF 373 (752)
T ss_pred cccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCC----ceEEeCCCCCchhHHHHHhhccc---CCCeEeccccch
Confidence 335788999999999988886543 2222232 49999999999999999999998 999999999998
Q ss_pred ccccchhhccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccCH-----------HHHHHHHHhhcCCceecCCC
Q psy2887 458 IEKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS-----------DVFNILLQILDDGRLTDNRG 524 (899)
Q Consensus 458 ~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~-----------~~~~~Ll~~le~g~~~~~~g 524 (899)
-.. |+|.... +.||.+++...||||||||||.... ..+|.||-.||.-.
T Consensus 374 dEm------------~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~------ 435 (752)
T KOG0734|consen 374 DEM------------FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFK------ 435 (752)
T ss_pred hhh------------hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcC------
Confidence 654 5554444 7899999999999999999996652 46788888888521
Q ss_pred ceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHh--hccCeEEEecCCCHHHHHHHHHHHHHH
Q psy2887 525 RTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQLNI 600 (899)
Q Consensus 525 ~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~~~~~~i~~~~l~~ 600 (899)
....+|||.+||.+.. +++.|. +|||..|.++.++-.-..+|+..++.+
T Consensus 436 ---qNeGiIvigATNfpe~------------------------LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~k 486 (752)
T KOG0734|consen 436 ---QNEGIIVIGATNFPEA------------------------LDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSK 486 (752)
T ss_pred ---cCCceEEEeccCChhh------------------------hhHHhcCCCccceeEecCCCCcccHHHHHHHHHhc
Confidence 2246778888886543 334444 899999999999999999999999854
No 95
>KOG0726|consensus
Probab=99.73 E-value=2.2e-18 Score=170.16 Aligned_cols=151 Identities=25% Similarity=0.359 Sum_probs=126.0
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
+.+.+++|||+||||||.||+++|+.. ...++.+--+.++ .+|.|+..+.++++|.-|.. ..|+|+|
T Consensus 217 kpPKGVIlyG~PGTGKTLLAKAVANqT----------SATFlRvvGseLi--QkylGdGpklvRqlF~vA~e-~apSIvF 283 (440)
T KOG0726|consen 217 KPPKGVILYGEPGTGKTLLAKAVANQT----------SATFLRVVGSELI--QKYLGDGPKLVRELFRVAEE-HAPSIVF 283 (440)
T ss_pred CCCCeeEEeCCCCCchhHHHHHHhccc----------chhhhhhhhHHHH--HHHhccchHHHHHHHHHHHh-cCCceEE
Confidence 456689999999999999999999977 6777777777887 78999999999999999885 4599999
Q ss_pred EccccccccCC---CCCchhhHHHhhhhhh-------cCCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCH
Q psy2887 91 IDELHTMIGTG---KVEGSIDAGNMLKPEL-------SRGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDI 157 (899)
Q Consensus 91 iDEi~~l~~~~---~~~~~~~~~~~l~~~l-------~~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~ 157 (899)
|||||.+..++ .+.+.++++..++.++ .++.+.||.|||..+ .+||+|.| |++. |+|+.|+.
T Consensus 284 iDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie-----~LDPaLiRPGrIDrKIef~~pDe 358 (440)
T KOG0726|consen 284 IDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE-----TLDPALIRPGRIDRKIEFPLPDE 358 (440)
T ss_pred eehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccc-----ccCHhhcCCCccccccccCCCch
Confidence 99999997654 2345566666666665 478999999999999 99999999 9996 99999999
Q ss_pred HHHHHHHHhhhhhhhcccCCCC
Q psy2887 158 EETISILRGLQKKYEVHHGVEI 179 (899)
Q Consensus 158 ~e~~~il~~~~~~~~~~~~~~~ 179 (899)
..+..|+.....+.....++.+
T Consensus 359 ~TkkkIf~IHTs~Mtl~~dVnl 380 (440)
T KOG0726|consen 359 KTKKKIFQIHTSRMTLAEDVNL 380 (440)
T ss_pred hhhceeEEEeecccchhccccH
Confidence 9999999887776555555544
No 96
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=4.9e-17 Score=178.93 Aligned_cols=200 Identities=20% Similarity=0.299 Sum_probs=137.9
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCc--eEEeccc---ccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES--IIRIDMS---EFIEKHS 462 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~--~~~~~~~---~~~~~~~ 462 (899)
.+++||++++..|..++...+.+ +.+||+||||||||++|+++|+.+...... ..+..|. .+.....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~--------ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIG--------HAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCC--------eEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCC
Confidence 67889999999999998864421 258999999999999999999999432110 0011111 1111100
Q ss_pred hhhccC-CCCCcccccccchhhHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEe
Q psy2887 463 ISRLIG-APPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMT 537 (899)
Q Consensus 463 ~~~l~g-~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 537 (899)
. .++- ......|.+..+.+.+.+.. ..+.|+||||+|.++...+|.||+.||+ +..+++||++
T Consensus 90 ~-dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEE-----------Pp~~viFILa 157 (484)
T PRK14956 90 S-DVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEE-----------PPAHIVFILA 157 (484)
T ss_pred c-cceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhc-----------CCCceEEEee
Confidence 0 0000 00012233333444444432 3467999999999999999999999997 4578889988
Q ss_pred cCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHH
Q psy2887 538 SNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKA 617 (899)
Q Consensus 538 sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 617 (899)
|+... .+.+.+++|| ..+.|.+++.+++.+.+...+. .++ +.++++
T Consensus 158 Tte~~------------------------kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~-------~Eg--i~~e~e 203 (484)
T PRK14956 158 TTEFH------------------------KIPETILSRC-QDFIFKKVPLSVLQDYSEKLCK-------IEN--VQYDQE 203 (484)
T ss_pred cCChh------------------------hccHHHHhhh-heeeecCCCHHHHHHHHHHHHH-------HcC--CCCCHH
Confidence 88532 3667799999 8999999999999888766653 244 678999
Q ss_pred HHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 618 ALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 618 ~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
++..+++ .+-||++..+..|++++
T Consensus 204 AL~~Ia~------~S~Gd~RdAL~lLeq~i 227 (484)
T PRK14956 204 GLFWIAK------KGDGSVRDMLSFMEQAI 227 (484)
T ss_pred HHHHHHH------HcCChHHHHHHHHHHHH
Confidence 9999998 44577777766677665
No 97
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.73 E-value=5e-17 Score=187.68 Aligned_cols=226 Identities=18% Similarity=0.217 Sum_probs=175.0
Q ss_pred cCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccC
Q psy2887 389 RVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIG 468 (899)
Q Consensus 389 ~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g 468 (899)
.++|...++..+...+..... ...++++.|++|||||++|++++........+|+.+||+.+......+.++|
T Consensus 139 ~lig~s~~~~~l~~~~~~~~~-------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg 211 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLSR-------SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFG 211 (469)
T ss_pred cceecCHHHHHHHHHHHHHhc-------cCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcC
Confidence 466777777777776654331 1226999999999999999999999877789999999999876666678889
Q ss_pred CCCC-cccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhh
Q psy2887 469 APPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKE 547 (899)
Q Consensus 469 ~~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~ 547 (899)
+..| +.|.... ....+..+.++.||||||+.+++..|..|+++++++.+....+......++.||+||+........
T Consensus 212 ~~~g~~~~~~~~--~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~ 289 (469)
T PRK10923 212 HEKGAFTGANTI--RQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQ 289 (469)
T ss_pred CCCCCCCCCCcC--CCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHH
Confidence 8765 3333221 122345566789999999999999999999999999988766555555688999999987654433
Q ss_pred hhcCcHHHHHHHHHHHHhhcCChhHhhccC-eEEEecCCCH--HHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHh
Q psy2887 548 MEKGDKEIIKLAVMNEVKIYFRPEFINRID-DIIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKISN 624 (899)
Q Consensus 548 ~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~-~~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 624 (899)
.+.|+++|++||+ ..|.++|+.+ +|+..++..++.++....... ...++++++..|..
T Consensus 290 -----------------~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~--~~~~~~~a~~~L~~ 350 (469)
T PRK10923 290 -----------------EGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVE--AKLLHPETEAALTR 350 (469)
T ss_pred -----------------cCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCC--CCCcCHHHHHHHHh
Confidence 4679999999995 5788888875 789999999988765543221 24689999999998
Q ss_pred cccCcccccccccccHHHHHHHH
Q psy2887 625 IGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 625 ~~~~~~~~~~di~~~~~~l~~~l 647 (899)
|+|+.+++.+.++ +++++
T Consensus 351 --~~wpgNv~eL~~~---i~~~~ 368 (469)
T PRK10923 351 --LAWPGNVRQLENT---CRWLT 368 (469)
T ss_pred --CCCCChHHHHHHH---HHHHH
Confidence 9999999988888 66665
No 98
>KOG0729|consensus
Probab=99.73 E-value=2e-17 Score=161.30 Aligned_cols=176 Identities=22% Similarity=0.296 Sum_probs=137.5
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
..+.++|||||||||||.+|+++|++. +..++.+--+.+. .+|+|+....++++|+-++ ...-||+|
T Consensus 209 dppkgvllygppgtgktl~aravanrt----------dacfirvigselv--qkyvgegarmvrelf~mar-tkkaciif 275 (435)
T KOG0729|consen 209 DPPKGVLLYGPPGTGKTLCARAVANRT----------DACFIRVIGSELV--QKYVGEGARMVRELFEMAR-TKKACIIF 275 (435)
T ss_pred CCCCceEEeCCCCCchhHHHHHHhccc----------CceEEeehhHHHH--HHHhhhhHHHHHHHHHHhc-ccceEEEE
Confidence 346689999999999999999999987 7788888777777 7899999999999999887 44579999
Q ss_pred EccccccccCCCC---CchhhHHHhhhhhh-------cCCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCH
Q psy2887 91 IDELHTMIGTGKV---EGSIDAGNMLKPEL-------SRGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDI 157 (899)
Q Consensus 91 iDEi~~l~~~~~~---~~~~~~~~~l~~~l-------~~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~ 157 (899)
+||+|.+...+-. .+..+++..++.++ .++++.++.+||.++ .+||+|+| |++. ++|..|+.
T Consensus 276 fdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpd-----tldpallrpgrldrkvef~lpdl 350 (435)
T KOG0729|consen 276 FDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPD-----TLDPALLRPGRLDRKVEFGLPDL 350 (435)
T ss_pred eeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCC-----CcCHhhcCCcccccceeccCCcc
Confidence 9999999875432 22334555555544 478999999999999 89999999 9996 99999999
Q ss_pred HHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 158 EETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 158 ~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
+-|..|++...+......++.+ +-++++|....+ +....++-+|...
T Consensus 351 egrt~i~kihaksmsverdir~-----ellarlcpnstg-----aeirsvcteagmf 397 (435)
T KOG0729|consen 351 EGRTHIFKIHAKSMSVERDIRF-----ELLARLCPNSTG-----AEIRSVCTEAGMF 397 (435)
T ss_pred cccceeEEEeccccccccchhH-----HHHHhhCCCCcc-----hHHHHHHHHhhHH
Confidence 9999999887776554444333 456677765443 4556666666543
No 99
>CHL00176 ftsH cell division protein; Validated
Probab=99.73 E-value=8.7e-17 Score=186.42 Aligned_cols=177 Identities=23% Similarity=0.326 Sum_probs=136.0
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
..+.++||+||||||||++|+++|+++ +.+++.++++.+. ..+.|.....++.+|..+.. ..|+|||
T Consensus 214 ~~p~gVLL~GPpGTGKT~LAralA~e~----------~~p~i~is~s~f~--~~~~g~~~~~vr~lF~~A~~-~~P~ILf 280 (638)
T CHL00176 214 KIPKGVLLVGPPGTGKTLLAKAIAGEA----------EVPFFSISGSEFV--EMFVGVGAARVRDLFKKAKE-NSPCIVF 280 (638)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeeeccHHHHH--HHhhhhhHHHHHHHHHHHhc-CCCcEEE
Confidence 345689999999999999999999988 7889988877765 44567777789999999874 5699999
Q ss_pred EccccccccCCCC---Cch---hhHHHhhhhhh----cCCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCH
Q psy2887 91 IDELHTMIGTGKV---EGS---IDAGNMLKPEL----SRGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDI 157 (899)
Q Consensus 91 iDEi~~l~~~~~~---~~~---~~~~~~l~~~l----~~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~ 157 (899)
|||+|.+...+.. .+. ....+.|+..+ .+..+++|++||.++ .+|++++| ||+. |.++.|+.
T Consensus 281 IDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~-----~LD~ALlRpGRFd~~I~v~lPd~ 355 (638)
T CHL00176 281 IDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVD-----ILDAALLRPGRFDRQITVSLPDR 355 (638)
T ss_pred EecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchH-----hhhhhhhccccCceEEEECCCCH
Confidence 9999999865432 111 22334444444 345799999999998 78999998 8986 99999999
Q ss_pred HHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhh
Q psy2887 158 EETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 215 (899)
Q Consensus 158 ~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~ 215 (899)
++|.+||+.++.... ..++..+..++..+.+|.+ +++..++.+|+...
T Consensus 356 ~~R~~IL~~~l~~~~-----~~~d~~l~~lA~~t~G~sg-----aDL~~lvneAal~a 403 (638)
T CHL00176 356 EGRLDILKVHARNKK-----LSPDVSLELIARRTPGFSG-----ADLANLLNEAAILT 403 (638)
T ss_pred HHHHHHHHHHHhhcc-----cchhHHHHHHHhcCCCCCH-----HHHHHHHHHHHHHH
Confidence 999999998887521 2345567777777766544 67888888776543
No 100
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.72 E-value=1.5e-16 Score=168.71 Aligned_cols=168 Identities=20% Similarity=0.212 Sum_probs=131.3
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEE
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFI 91 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~i 91 (899)
...|++|+||||||||++|+++|+.+..... ....+++.++...+. +.+.|+.+..+..+|+.+. ++||||
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~---~~~~~~v~v~~~~l~--~~~~g~~~~~~~~~~~~a~----~gvL~i 127 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQILHRLGY---VRKGHLVSVTRDDLV--GQYIGHTAPKTKEILKRAM----GGVLFI 127 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHHcCC---cccceEEEecHHHHh--HhhcccchHHHHHHHHHcc----CcEEEE
Confidence 3458999999999999999999998854321 124468888877776 3577887778888888764 469999
Q ss_pred ccccccccCCC-CCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhcccc-ccccCCCHHHHHHHHHhh
Q psy2887 92 DELHTMIGTGK-VEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGL 167 (899)
Q Consensus 92 DEi~~l~~~~~-~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~-i~l~~p~~~e~~~il~~~ 167 (899)
||++.|.+.+. ...+.++.+.|...|+. +.+++|++++...+..++.++|+|.+||.. |.|++|+.+++..|++.+
T Consensus 128 DEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~ 207 (284)
T TIGR02880 128 DEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLM 207 (284)
T ss_pred echhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHH
Confidence 99999964322 22345677788888864 478999999988777788899999999985 999999999999999999
Q ss_pred hhhhhcccCCCCCHHHHHHHHhhhh
Q psy2887 168 QKKYEVHHGVEITDPAIVAASELSY 192 (899)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (899)
+++. +..++++++..+..+..
T Consensus 208 l~~~----~~~l~~~a~~~L~~~l~ 228 (284)
T TIGR02880 208 LKEQ----QYRFSAEAEEAFADYIA 228 (284)
T ss_pred HHHh----ccccCHHHHHHHHHHHH
Confidence 8873 45688888887766543
No 101
>KOG0732|consensus
Probab=99.72 E-value=2.6e-17 Score=191.94 Aligned_cols=181 Identities=26% Similarity=0.348 Sum_probs=141.5
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEE
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFI 91 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~i 91 (899)
+++++||+||||||||..|+++|..+..+. ....++.-...... ++|+|+.+++++-+|++|.+. .|+|+|+
T Consensus 298 pPrgvL~~GppGTGkTl~araLa~~~s~~~-----~kisffmrkgaD~l--skwvgEaERqlrllFeeA~k~-qPSIIff 369 (1080)
T KOG0732|consen 298 PPRGVLFHGPPGTGKTLMARALAAACSRGN-----RKISFFMRKGADCL--SKWVGEAERQLRLLFEEAQKT-QPSIIFF 369 (1080)
T ss_pred CCcceeecCCCCCchhHHHHhhhhhhcccc-----cccchhhhcCchhh--ccccCcHHHHHHHHHHHHhcc-CceEEec
Confidence 455799999999999999999999885432 12223322223333 789999999999999999854 5999999
Q ss_pred ccccccccCCCCCch---hhHHHhhhhhh----cCCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCHHHHH
Q psy2887 92 DELHTMIGTGKVEGS---IDAGNMLKPEL----SRGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETI 161 (899)
Q Consensus 92 DEi~~l~~~~~~~~~---~~~~~~l~~~l----~~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~~e~~ 161 (899)
||||-|.+.+.+... ..+...|+.+| .+|.+++|+|||+++ .+||+|+| ||+. ++|+.|+.+.|.
T Consensus 370 deIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpd-----a~dpaLRRPgrfdref~f~lp~~~ar~ 444 (1080)
T KOG0732|consen 370 DEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPD-----AIDPALRRPGRFDREFYFPLPDVDARA 444 (1080)
T ss_pred cccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCcc-----ccchhhcCCcccceeEeeeCCchHHHH
Confidence 999999988755332 23556667666 479999999999999 99999999 9996 999999999999
Q ss_pred HHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 162 SILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 162 ~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
+|+.....+. .-.++...+..+++.+.+|.+ ++...++.+|+-.
T Consensus 445 ~Il~Ihtrkw----~~~i~~~l~~~la~~t~gy~g-----aDlkaLCTeAal~ 488 (1080)
T KOG0732|consen 445 KILDIHTRKW----EPPISRELLLWLAEETSGYGG-----ADLKALCTEAALI 488 (1080)
T ss_pred HHHHHhccCC----CCCCCHHHHHHHHHhccccch-----HHHHHHHHHHhhh
Confidence 9998766553 245788899999999999887 4555566555533
No 102
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.71 E-value=2e-16 Score=181.50 Aligned_cols=226 Identities=18% Similarity=0.217 Sum_probs=175.1
Q ss_pred cCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccC
Q psy2887 389 RVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIG 468 (899)
Q Consensus 389 ~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g 468 (899)
.++|.+..++.+...+..... ...++++.|++||||+++|++++........+|+.++|..+......+.+||
T Consensus 140 ~lig~s~~~~~l~~~i~~~a~-------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg 212 (445)
T TIGR02915 140 GLITSSPGMQKICRTIEKIAP-------SDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFG 212 (445)
T ss_pred ceeecCHHHHHHHHHHHHHhC-------CCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcC
Confidence 578999888888887765431 1125899999999999999999999877788999999999876655677888
Q ss_pred CCCCc-ccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhh
Q psy2887 469 APPGY-IGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKE 547 (899)
Q Consensus 469 ~~~~~-~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~ 547 (899)
...+. .|... ...+.+..+.+++||||||+.+++.+|..|+++++++.+....+......++.+|+||+........
T Consensus 213 ~~~~~~~~~~~--~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~ 290 (445)
T TIGR02915 213 YEKGAFTGAVK--QTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIA 290 (445)
T ss_pred CCCCCcCCCcc--CCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHH
Confidence 76553 22211 1233455667889999999999999999999999998877655444445688999999987764433
Q ss_pred hhcCcHHHHHHHHHHHHhhcCChhHhhccC-eEEEecCCCH--HHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHh
Q psy2887 548 MEKGDKEIIKLAVMNEVKIYFRPEFINRID-DIIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKISN 624 (899)
Q Consensus 548 ~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~-~~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 624 (899)
.+.|+++|++|+. ..|.++|+.+ +|+..+++.++.++....... ...++++++..|..
T Consensus 291 -----------------~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~--~~~~~~~a~~~L~~ 351 (445)
T TIGR02915 291 -----------------EGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRK--TKGFTDDALRALEA 351 (445)
T ss_pred -----------------cCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCC--CCCCCHHHHHHHHh
Confidence 4679999999996 4788888875 789999999988876544322 25789999999998
Q ss_pred cccCcccccccccccHHHHHHHH
Q psy2887 625 IGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 625 ~~~~~~~~~~di~~~~~~l~~~l 647 (899)
|+|+.+++.+.+. +++++
T Consensus 352 --~~wpgNvreL~~~---i~~a~ 369 (445)
T TIGR02915 352 --HAWPGNVRELENK---VKRAV 369 (445)
T ss_pred --CCCCChHHHHHHH---HHHHH
Confidence 9999888888887 66665
No 103
>KOG0738|consensus
Probab=99.71 E-value=3.4e-17 Score=168.55 Aligned_cols=166 Identities=22% Similarity=0.325 Sum_probs=129.2
Q ss_pred ccCCChHHHHHHHHHHHHHhh---cCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchh
Q psy2887 388 KRVVGQDEAISAVSNAIRRSR---SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 464 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~---~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 464 (899)
.+|.|..+|++.|.+++...- ..++.-++|...+|++||||||||+|||++|.+. +..|+.+..+.+.++
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc---~tTFFNVSsstltSK---- 284 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC---GTTFFNVSSSTLTSK---- 284 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh---cCeEEEechhhhhhh----
Confidence 455678888888887774321 0112234666689999999999999999999999 889999988888776
Q ss_pred hccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccC------------HHHHHHHHHhhcCCceecCCCceEecC
Q psy2887 465 RLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN------------SDVFNILLQILDDGRLTDNRGRTINFR 530 (899)
Q Consensus 465 ~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~------------~~~~~~Ll~~le~g~~~~~~g~~~~~~ 530 (899)
|.|.++. +.||+.++...+++|||||||.+. ..+-+.||..||.-. .+...+
T Consensus 285 --------wRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~------~t~e~~ 350 (491)
T KOG0738|consen 285 --------WRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQ------GTLENS 350 (491)
T ss_pred --------hccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccc------cccccc
Confidence 8888887 889999999999999999999664 368899999998521 111122
Q ss_pred C-eEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHH
Q psy2887 531 N-TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQL 598 (899)
Q Consensus 531 ~-~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l 598 (899)
+ ++|+++||.+.+ ++..|+.||...|.++-++.+....+++..|
T Consensus 351 k~VmVLAATN~PWd------------------------iDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l 395 (491)
T KOG0738|consen 351 KVVMVLAATNFPWD------------------------IDEALRRRLEKRIYIPLPDAEARSALIKILL 395 (491)
T ss_pred eeEEEEeccCCCcc------------------------hHHHHHHHHhhheeeeCCCHHHHHHHHHHhh
Confidence 2 567778888876 4556899998899999999999999888777
No 104
>KOG0739|consensus
Probab=99.71 E-value=7e-17 Score=160.18 Aligned_cols=194 Identities=17% Similarity=0.298 Sum_probs=140.7
Q ss_pred ccCCChHHHHHHHHHHHHHhh---cCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchh
Q psy2887 388 KRVVGQDEAISAVSNAIRRSR---SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 464 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~---~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 464 (899)
.+|.|.+.|+++|.+++.... .-+...++|...|||+|||||||+.||+++|.+. +..|+.+..+++.++
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nSTFFSvSSSDLvSK---- 205 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLVSK---- 205 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---CCceEEeehHHHHHH----
Confidence 455688888888888874321 1223346777789999999999999999999998 788999998888776
Q ss_pred hccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccCH-----------HHHHHHHHhhcCCceecCCCceEecCC
Q psy2887 465 RLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS-----------DVFNILLQILDDGRLTDNRGRTINFRN 531 (899)
Q Consensus 465 ~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~-----------~~~~~Ll~~le~g~~~~~~g~~~~~~~ 531 (899)
|.|+++. +.||+.+++..++||||||||.+.- .+-..||-.|+. .-.+...
T Consensus 206 --------WmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqG--------VG~d~~g 269 (439)
T KOG0739|consen 206 --------WMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQG--------VGNDNDG 269 (439)
T ss_pred --------HhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhc--------cccCCCc
Confidence 7787776 7899999999999999999997652 344555655652 2234567
Q ss_pred eEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcc
Q psy2887 532 TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 611 (899)
Q Consensus 532 ~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~ 611 (899)
++++.+||.+.. ++..+..||+..|+++-+.......+++..+. ...
T Consensus 270 vLVLgATNiPw~------------------------LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG---------~tp 316 (439)
T KOG0739|consen 270 VLVLGATNIPWV------------------------LDSAIRRRFEKRIYIPLPEAHARARMFKLHLG---------DTP 316 (439)
T ss_pred eEEEecCCCchh------------------------HHHHHHHHhhcceeccCCcHHHhhhhheeccC---------CCc
Confidence 788889998764 44558899988888888887777666655551 233
Q ss_pred eeecHHHHHHHHhcccCccccccccccc
Q psy2887 612 LKISKAALKKISNIGFDLIYGARDVHGC 639 (899)
Q Consensus 612 ~~~~~~~~~~L~~~~~~~~~~~~di~~~ 639 (899)
..+++.-+..|... ...|.-.||.-+
T Consensus 317 ~~LT~~d~~eL~~k--TeGySGsDisiv 342 (439)
T KOG0739|consen 317 HVLTEQDFKELARK--TEGYSGSDISIV 342 (439)
T ss_pred cccchhhHHHHHhh--cCCCCcCceEEE
Confidence 56777777778762 233444455444
No 105
>KOG0727|consensus
Probab=99.71 E-value=7.3e-17 Score=156.22 Aligned_cols=161 Identities=24% Similarity=0.425 Sum_probs=121.9
Q ss_pred ccCCChHHHHHHHHHHHHH--------hhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRR--------SRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 459 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~--------~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 459 (899)
.++.|.+-.++.+++++.. ...|+.+|+ .+|+|||||||||+||+++|+.. ...|+++.+++|..
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidppr----gvllygppg~gktml~kava~~t---~a~firvvgsefvq 227 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPR----GVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFVQ 227 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCc----ceEEeCCCCCcHHHHHHHHhhcc---chheeeeccHHHHH
Confidence 5677888888888887743 234555454 49999999999999999999987 88999999999976
Q ss_pred ccchhhccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccC-----------HHHHHHHHHhhcCCceecCCCce
Q psy2887 460 KHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRT 526 (899)
Q Consensus 460 ~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~ 526 (899)
+ |.|+... +.+|..++++.++|+||||||.+. .++|..|+.++..---.|
T Consensus 228 k------------ylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfd----- 290 (408)
T KOG0727|consen 228 K------------YLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFD----- 290 (408)
T ss_pred H------------HhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcC-----
Confidence 5 5555544 678889999999999999999654 357777766665311111
Q ss_pred EecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHh--hccCeEEEecCCCHHHHHHHHHHH
Q psy2887 527 INFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQ 597 (899)
Q Consensus 527 ~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~~~~~~i~~~~ 597 (899)
...|+-+||+||... .++|.|+ +|+|..|.|+-+++.+.+-++...
T Consensus 291 -q~~nvkvimatnrad------------------------tldpallrpgrldrkiefplpdrrqkrlvf~ti 338 (408)
T KOG0727|consen 291 -QTTNVKVIMATNRAD------------------------TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTI 338 (408)
T ss_pred -cccceEEEEecCccc------------------------ccCHhhcCCccccccccCCCCchhhhhhhHHhh
Confidence 236788999999643 4777777 899999999988887766654433
No 106
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=5.4e-17 Score=181.77 Aligned_cols=178 Identities=25% Similarity=0.346 Sum_probs=140.2
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
+-+.++||+||||||||.||+++|.+. +.+++++.-+++. .-++|-...+++.+|.++++. .|||+|
T Consensus 181 kiPkGvlLvGpPGTGKTLLAkAvAgEA----------~VPFf~iSGS~FV--emfVGvGAsRVRdLF~qAkk~-aP~IIF 247 (596)
T COG0465 181 KIPKGVLLVGPPGTGKTLLAKAVAGEA----------GVPFFSISGSDFV--EMFVGVGASRVRDLFEQAKKN-APCIIF 247 (596)
T ss_pred ccccceeEecCCCCCcHHHHHHHhccc----------CCCceeccchhhh--hhhcCCCcHHHHHHHHHhhcc-CCCeEE
Confidence 567799999999999999999999998 8889988777665 557888888999999999854 599999
Q ss_pred EccccccccCCCC---Cchhh---HHHhhhhhhc----CCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCH
Q psy2887 91 IDELHTMIGTGKV---EGSID---AGNMLKPELS----RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDI 157 (899)
Q Consensus 91 iDEi~~l~~~~~~---~~~~~---~~~~l~~~l~----~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~ 157 (899)
|||+|.+...+.. .+..+ ..|.|+..|+ +..|++|++||+++ -+||||+| ||+. |.++.|+.
T Consensus 248 IDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpd-----VlD~ALlRpgRFDRqI~V~~PDi 322 (596)
T COG0465 248 IDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPD-----VLDPALLRPGRFDRQILVELPDI 322 (596)
T ss_pred EehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcc-----cchHhhcCCCCcceeeecCCcch
Confidence 9999999877642 22222 4455555553 34799999999999 89999999 9997 99999999
Q ss_pred HHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhh
Q psy2887 158 EETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIK 216 (899)
Q Consensus 158 ~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~ 216 (899)
..|.+|++-+++.......++ +..+++.+.++.+ ++..+++.+|+-...
T Consensus 323 ~gRe~IlkvH~~~~~l~~~Vd-----l~~iAr~tpGfsG-----AdL~nl~NEAal~aa 371 (596)
T COG0465 323 KGREQILKVHAKNKPLAEDVD-----LKKIARGTPGFSG-----ADLANLLNEAALLAA 371 (596)
T ss_pred hhHHHHHHHHhhcCCCCCcCC-----HHHHhhhCCCccc-----chHhhhHHHHHHHHH
Confidence 999999997666543333332 3347777777766 788888888776554
No 107
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=2.9e-16 Score=178.46 Aligned_cols=200 Identities=16% Similarity=0.237 Sum_probs=135.8
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCC----ceE-Eecccccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE----SII-RIDMSEFIEKHS 462 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~----~~~-~~~~~~~~~~~~ 462 (899)
.+|+||+++++.|.+++...+ ..+.+||+||+|||||++|+++|+.++.... ++- +-+|..+.....
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR--------L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR--------LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRF 87 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCC
Confidence 678899999999999987533 1225799999999999999999999953211 110 001111111100
Q ss_pred hhhccC-CCCCcccccccchhhHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEe
Q psy2887 463 ISRLIG-APPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMT 537 (899)
Q Consensus 463 ~~~l~g-~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 537 (899)
. .++- ......|.++.+.+.+.+.. ..++|+||||+|.++...+|.||+.||+ ...+++||++
T Consensus 88 ~-DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEE-----------PP~~v~FILa 155 (830)
T PRK07003 88 V-DYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEE-----------PPPHVKFILA 155 (830)
T ss_pred c-eEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHh-----------cCCCeEEEEE
Confidence 0 0110 00011222223333333322 3468999999999999999999999998 4568899999
Q ss_pred cCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHH
Q psy2887 538 SNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKA 617 (899)
Q Consensus 538 sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 617 (899)
||... .+.+.++||| ..|.|.+++.+++.+.+...+. .++ +.++++
T Consensus 156 Ttd~~------------------------KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~-------~Eg--I~id~e 201 (830)
T PRK07003 156 TTDPQ------------------------KIPVTVLSRC-LQFNLKQMPAGHIVSHLERILG-------EER--IAFEPQ 201 (830)
T ss_pred ECChh------------------------hccchhhhhe-EEEecCCcCHHHHHHHHHHHHH-------HcC--CCCCHH
Confidence 99533 3566799999 9999999999999998877663 244 678999
Q ss_pred HHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 618 ALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 618 ~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
++..|++ ..-||+...+..+.+.+
T Consensus 202 AL~lIA~------~A~GsmRdALsLLdQAi 225 (830)
T PRK07003 202 ALRLLAR------AAQGSMRDALSLTDQAI 225 (830)
T ss_pred HHHHHHH------HcCCCHHHHHHHHHHHH
Confidence 9999988 33466666655455555
No 108
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.70 E-value=1.7e-15 Score=176.48 Aligned_cols=191 Identities=24% Similarity=0.307 Sum_probs=123.8
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccch-------hhHHHHhCCCE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGY-------LTEIVRRKPYS 492 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~-------l~~~~~~~~~~ 492 (899)
++||.|.||+|||++..++|+.. |..++++|.++..+ +..+||+...- +++++ +..+++ .++
T Consensus 1545 pilLEGsPGVGKTSlItaLAr~t---G~kliRINLSeQTd---L~DLfGsd~Pv---e~~Gef~w~dapfL~amr--~G~ 1613 (4600)
T COG5271 1545 PILLEGSPGVGKTSLITALARKT---GKKLIRINLSEQTD---LCDLFGSDLPV---EEGGEFRWMDAPFLHAMR--DGG 1613 (4600)
T ss_pred ceeecCCCCccHHHHHHHHHHHh---cCceEEeeccccch---HHHHhCCCCCc---ccCceeEecccHHHHHhh--cCC
Confidence 59999999999999999999999 99999999998755 45677774321 12222 233333 345
Q ss_pred EEEEccccccCHHHHHHHHHhhcCC-ceecCC-CceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCCh
Q psy2887 493 LILLDEIEKANSDVFNILLQILDDG-RLTDNR-GRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRP 570 (899)
Q Consensus 493 vl~lDEid~~~~~~~~~Ll~~le~g-~~~~~~-g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 570 (899)
.+++||+.-+.+.++..|...++.. ....+. ..+.+...-..|+++..+...= + -++.++.
T Consensus 1614 WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qg----g-------------GRKgLPk 1676 (4600)
T COG5271 1614 WVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQG----G-------------GRKGLPK 1676 (4600)
T ss_pred EEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcC----C-------------CcccCCH
Confidence 9999999999999999999999864 223222 3444443334444444333211 1 1567899
Q ss_pred hHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcC--cceeecHHHHHHH--HhcccCccccccccccc
Q psy2887 571 EFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMN--MDLKISKAALKKI--SNIGFDLIYGARDVHGC 639 (899)
Q Consensus 571 ~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~--~~~~~~~~~~~~L--~~~~~~~~~~~~di~~~ 639 (899)
.|++|| .+|.+..++.+|+..|+.....+........- ....+.+.+...+ ...|.+|.++.||--++
T Consensus 1677 SF~nRF-svV~~d~lt~dDi~~Ia~~~yp~v~~d~~~kiik~ms~lqd~i~k~~~~g~~gsPwefnlrdTLRw 1748 (4600)
T COG5271 1677 SFLNRF-SVVKMDGLTTDDITHIANKMYPQVNEDWRLKIIKFMSRLQDNIEKDISFGSFGSPWEFNLRDTLRW 1748 (4600)
T ss_pred HHhhhh-heEEecccccchHHHHHHhhCCccChHHHHHHHHHHHHHHHhhhhhhcccCCCCCeEEehHHHHHH
Confidence 999999 79999999999999998866543322211110 0111222222222 22345666777666665
No 109
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.69 E-value=4.2e-16 Score=172.73 Aligned_cols=176 Identities=25% Similarity=0.343 Sum_probs=130.8
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEE
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFI 91 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~i 91 (899)
.+.++||+||||||||++|+++|+.+ +.+++.+....+. ..+.|+....++.+|..+.. ..|+||||
T Consensus 155 ~p~gvLL~GppGtGKT~lakaia~~l----------~~~~~~v~~~~l~--~~~~g~~~~~i~~~f~~a~~-~~p~il~i 221 (364)
T TIGR01242 155 PPKGVLLYGPPGTGKTLLAKAVAHET----------NATFIRVVGSELV--RKYIGEGARLVREIFELAKE-KAPSIIFI 221 (364)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhC----------CCCEEecchHHHH--HHhhhHHHHHHHHHHHHHHh-cCCcEEEh
Confidence 45679999999999999999999988 6677777666655 45778888888999988764 45899999
Q ss_pred ccccccccCCCCC---chhhHHHhhhhhh---c----CCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCHH
Q psy2887 92 DELHTMIGTGKVE---GSIDAGNMLKPEL---S----RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIE 158 (899)
Q Consensus 92 DEi~~l~~~~~~~---~~~~~~~~l~~~l---~----~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~~ 158 (899)
||+|.+...+... +.......+...+ + .+.+.+|+|||.++ .+|+++++ ||+. |.|+.|+.+
T Consensus 222 DEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~-----~ld~al~r~grfd~~i~v~~P~~~ 296 (364)
T TIGR01242 222 DEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPD-----ILDPALLRPGRFDRIIEVPLPDFE 296 (364)
T ss_pred hhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh-----hCChhhcCcccCceEEEeCCcCHH
Confidence 9999998654321 1222233333333 2 45799999999998 89999998 9985 999999999
Q ss_pred HHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhh
Q psy2887 159 ETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 215 (899)
Q Consensus 159 e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~ 215 (899)
+|.+|++.++.......+ ..+..++..+.+|.+ ++...++..|+..+
T Consensus 297 ~r~~Il~~~~~~~~l~~~-----~~~~~la~~t~g~sg-----~dl~~l~~~A~~~a 343 (364)
T TIGR01242 297 GRLEILKIHTRKMKLAED-----VDLEAIAKMTEGASG-----ADLKAICTEAGMFA 343 (364)
T ss_pred HHHHHHHHHHhcCCCCcc-----CCHHHHHHHcCCCCH-----HHHHHHHHHHHHHH
Confidence 999999987765332222 235667777766543 67777777776554
No 110
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.69 E-value=4.5e-16 Score=154.64 Aligned_cols=180 Identities=16% Similarity=0.276 Sum_probs=137.8
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhcc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 467 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (899)
.+.+||+++++.+.-.++..+.. ..+.-|+||+||||.||||||..||+++ +.++....++.+....
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r----~e~lDHvLl~GPPGlGKTTLA~IIA~Em---gvn~k~tsGp~leK~g------ 92 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKR----GEALDHVLLFGPPGLGKTTLAHIIANEL---GVNLKITSGPALEKPG------ 92 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhc----CCCcCeEEeeCCCCCcHHHHHHHHHHHh---cCCeEecccccccChh------
Confidence 56789999999999999877632 2344589999999999999999999999 8887777666654332
Q ss_pred CCCCCcccccccchhhHHHH-hCCCEEEEEccccccCHHHHHHHHHhhcCCceec--CCC-----ceEecCCeEEEEecC
Q psy2887 468 GAPPGYIGYEEGGYLTEIVR-RKPYSLILLDEIEKANSDVFNILLQILDDGRLTD--NRG-----RTINFRNTIIVMTSN 539 (899)
Q Consensus 468 g~~~~~~g~~~~~~l~~~~~-~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~--~~g-----~~~~~~~~~iI~tsn 539 (899)
.+...+. -.+++|||||||+++++.+-+.|+.+||+-++-. +.| ..++.....+|-+|+
T Consensus 93 -------------DlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATT 159 (332)
T COG2255 93 -------------DLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATT 159 (332)
T ss_pred -------------hHHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecc
Confidence 2333333 2356799999999999999999999999875542 222 245666667777766
Q ss_pred CChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHH
Q psy2887 540 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAAL 619 (899)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~ 619 (899)
. .+.+..+|.+||..+..+..|+.+|+.+|+.+.-.. ..+.+++++.
T Consensus 160 r------------------------~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~---------l~i~i~~~~a 206 (332)
T COG2255 160 R------------------------AGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI---------LGIEIDEEAA 206 (332)
T ss_pred c------------------------cccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHH---------hCCCCChHHH
Confidence 4 234677799999999999999999999998766522 2378889999
Q ss_pred HHHHhcc
Q psy2887 620 KKISNIG 626 (899)
Q Consensus 620 ~~L~~~~ 626 (899)
..+++.+
T Consensus 207 ~eIA~rS 213 (332)
T COG2255 207 LEIARRS 213 (332)
T ss_pred HHHHHhc
Confidence 8888744
No 111
>KOG0728|consensus
Probab=99.69 E-value=1.4e-16 Score=154.09 Aligned_cols=163 Identities=28% Similarity=0.452 Sum_probs=126.3
Q ss_pred ccCCChHHHHHHHHHHHHHh--------hcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 459 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~--------~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 459 (899)
+.+.|.+..++.|.+.+... ..|+..|+ .+|||||||||||.+|+++|+.. +..|+++.++++..
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPK----GvlLygppgtGktLlaraVahht---~c~firvsgselvq 219 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK----GVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQ 219 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCc----ceEEecCCCCchhHHHHHHHhhc---ceEEEEechHHHHH
Confidence 56778888888888887432 23554444 39999999999999999999988 89999999999977
Q ss_pred ccchhhccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccCH-----------HHHHHHHHhhcCCceecCCCce
Q psy2887 460 KHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS-----------DVFNILLQILDDGRLTDNRGRT 526 (899)
Q Consensus 460 ~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~-----------~~~~~Ll~~le~g~~~~~~g~~ 526 (899)
+ |+|+... +.+|-.++...++|+|.||||++.. ++|.+.|.++.. .+|..
T Consensus 220 k------------~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnq-----ldgfe 282 (404)
T KOG0728|consen 220 K------------YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQ-----LDGFE 282 (404)
T ss_pred H------------HhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHh-----ccccc
Confidence 6 6766555 7888889999999999999998753 577777766653 11111
Q ss_pred EecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHh--hccCeEEEecCCCHHHHHHHHHHHHH
Q psy2887 527 INFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQLN 599 (899)
Q Consensus 527 ~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~~~~~~i~~~~l~ 599 (899)
...|.-+||+||.- ..++|.|+ +|+|..|.|+|++++...+|++..-.
T Consensus 283 -atknikvimatnri------------------------dild~allrpgridrkiefp~p~e~ar~~ilkihsr 332 (404)
T KOG0728|consen 283 -ATKNIKVIMATNRI------------------------DILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSR 332 (404)
T ss_pred -cccceEEEEecccc------------------------ccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhh
Confidence 23677799999952 23566666 89999999999999999998875543
No 112
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.68 E-value=5.3e-16 Score=178.80 Aligned_cols=226 Identities=16% Similarity=0.226 Sum_probs=171.0
Q ss_pred cCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccC
Q psy2887 389 RVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIG 468 (899)
Q Consensus 389 ~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g 468 (899)
.++|.+..+..+...+..... ...++++.|++||||+++|++++......+.+|+.++|..+......+.+||
T Consensus 144 ~ii~~S~~~~~~~~~~~~~a~-------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg 216 (457)
T PRK11361 144 HILTNSPAMMDICKDTAKIAL-------SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFG 216 (457)
T ss_pred ceecccHHHhHHHHHHHHHcC-------CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcC
Confidence 356777777666666655431 1236999999999999999999998877789999999999877666678888
Q ss_pred CCCCcc-cccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhh
Q psy2887 469 APPGYI-GYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKE 547 (899)
Q Consensus 469 ~~~~~~-g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~ 547 (899)
...+.. |.... -...+..+.+++||||||+.+++.+|..|+.+++++.+....+......++.||+|||.....+..
T Consensus 217 ~~~~~~~~~~~~--~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~ 294 (457)
T PRK11361 217 HEKGAFTGAQTL--RQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVK 294 (457)
T ss_pred CCCCCCCCCCCC--CCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHH
Confidence 765422 22111 123445566789999999999999999999999998876544444444678999999987765444
Q ss_pred hhcCcHHHHHHHHHHHHhhcCChhHhhccC-eEEEecCCCH--HHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHh
Q psy2887 548 MEKGDKEIIKLAVMNEVKIYFRPEFINRID-DIIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKISN 624 (899)
Q Consensus 548 ~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~-~~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 624 (899)
.+.|+++|+.|+. ..|.++|+.+ +|+..++..++.++....... ...+++++++.|..
T Consensus 295 -----------------~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~--~~~~~~~a~~~L~~ 355 (457)
T PRK11361 295 -----------------EGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRD--IIDIDPMAMSLLTA 355 (457)
T ss_pred -----------------cCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCC--CCCcCHHHHHHHHc
Confidence 4679999999995 4777888874 888889888888875543221 25789999999998
Q ss_pred cccCcccccccccccHHHHHHHH
Q psy2887 625 IGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 625 ~~~~~~~~~~di~~~~~~l~~~l 647 (899)
|+|+.+++.+... +++++
T Consensus 356 --~~wpgNv~eL~~~---~~~~~ 373 (457)
T PRK11361 356 --WSWPGNIRELSNV---IERAV 373 (457)
T ss_pred --CCCCCcHHHHHHH---HHHHH
Confidence 9999899888887 66655
No 113
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=2.6e-16 Score=176.84 Aligned_cols=183 Identities=17% Similarity=0.273 Sum_probs=127.0
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCC---c-e---EEecccc---c
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE---S-I---IRIDMSE---F 457 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~---~-~---~~~~~~~---~ 457 (899)
.+|+||+++++.|.+++...+.. +.+||+||+|||||++|+.+|+.++..+. . . -+..|.. +
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLp--------HA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I 87 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLH--------HAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEI 87 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCc--------eEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHH
Confidence 67899999999999999865522 35799999999999999999999954210 0 0 0111111 1
Q ss_pred ccccchhhccCC-CCCcccccccchhhHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCe
Q psy2887 458 IEKHSISRLIGA-PPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNT 532 (899)
Q Consensus 458 ~~~~~~~~l~g~-~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ 532 (899)
...... .++.- ....+|.++.+.+.+.+.. ..++|+||||+|.++...+|.||+.||+ ...++
T Consensus 88 ~aG~hp-DviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEE-----------PP~~v 155 (700)
T PRK12323 88 DAGRFV-DYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEE-----------PPEHV 155 (700)
T ss_pred HcCCCC-cceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhcc-----------CCCCc
Confidence 110000 11100 0012333333444444433 3467999999999999999999999998 45788
Q ss_pred EEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcce
Q psy2887 533 IIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDL 612 (899)
Q Consensus 533 ~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~ 612 (899)
+||++||.... +.+.++||| ..+.|.+++.+++.+.+...+.. ++ +
T Consensus 156 ~FILaTtep~k------------------------LlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~-------Eg--i 201 (700)
T PRK12323 156 KFILATTDPQK------------------------IPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGE-------EG--I 201 (700)
T ss_pred eEEEEeCChHh------------------------hhhHHHHHH-HhcccCCCChHHHHHHHHHHHHH-------cC--C
Confidence 89999985433 556699999 99999999999999887777632 34 6
Q ss_pred eecHHHHHHHHh
Q psy2887 613 KISKAALKKISN 624 (899)
Q Consensus 613 ~~~~~~~~~L~~ 624 (899)
.+++++++.+++
T Consensus 202 ~~d~eAL~~IA~ 213 (700)
T PRK12323 202 AHEVNALRLLAQ 213 (700)
T ss_pred CCCHHHHHHHHH
Confidence 678888888877
No 114
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=3.7e-16 Score=181.20 Aligned_cols=184 Identities=18% Similarity=0.263 Sum_probs=125.6
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCC-c-eEEecccc---cccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE-S-IIRIDMSE---FIEKHS 462 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~-~-~~~~~~~~---~~~~~~ 462 (899)
.+|+||+++++.|.+++...+. .+.+||+||||||||++|+++|+.++.... . ..+..|.. +.....
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl--------~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~ 87 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRL--------HHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRF 87 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCC--------CeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCC
Confidence 6788999999999999876442 224699999999999999999999954211 0 01111111 111000
Q ss_pred hhhccCCCCCcccccccchhhHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEec
Q psy2887 463 ISRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTS 538 (899)
Q Consensus 463 ~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ts 538 (899)
...+.-......|.+..+.+...+.. +.+.|+||||++++....+|.||+.||+ +..+++||++|
T Consensus 88 ~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEE-----------PP~~vrFILaT 156 (944)
T PRK14949 88 VDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEE-----------PPEHVKFLLAT 156 (944)
T ss_pred ceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-----------cCCCeEEEEEC
Confidence 00000000001222233444444432 3467999999999999999999999998 45677888888
Q ss_pred CCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHH
Q psy2887 539 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAA 618 (899)
Q Consensus 539 n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~ 618 (899)
+.... +.+.+++|| .++.|.+++.+++.+.+...+.. .+ +.+++++
T Consensus 157 Te~~k------------------------Ll~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~-------Eg--I~~edeA 202 (944)
T PRK14949 157 TDPQK------------------------LPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQ-------EQ--LPFEAEA 202 (944)
T ss_pred CCchh------------------------chHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHH-------cC--CCCCHHH
Confidence 75333 456689999 89999999999999988777643 23 6789999
Q ss_pred HHHHHh
Q psy2887 619 LKKISN 624 (899)
Q Consensus 619 ~~~L~~ 624 (899)
++.|+.
T Consensus 203 L~lIA~ 208 (944)
T PRK14949 203 LTLLAK 208 (944)
T ss_pred HHHHHH
Confidence 999987
No 115
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.67 E-value=7.9e-16 Score=177.62 Aligned_cols=226 Identities=21% Similarity=0.257 Sum_probs=174.5
Q ss_pred cCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccC
Q psy2887 389 RVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIG 468 (899)
Q Consensus 389 ~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g 468 (899)
.++|.+.+...+...+..... . ..++++.|++||||+++|++++....+...+|+.+||..+......+.+||
T Consensus 135 ~lig~s~~~~~v~~~i~~~a~------~-~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg 207 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLSR------S-DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFG 207 (463)
T ss_pred ceeecCHHHHHHHHHHHHHhC------c-CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcC
Confidence 356777777777666654321 1 126899999999999999999999877788999999999876655677888
Q ss_pred CCCC-cccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhh
Q psy2887 469 APPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKE 547 (899)
Q Consensus 469 ~~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~ 547 (899)
...+ +.|... .....+..+.+++||||||+.+++.+|..|+++|+++.+....+......++.+|+||+...+.+..
T Consensus 208 ~~~~~~~~~~~--~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~ 285 (463)
T TIGR01818 208 HEKGAFTGANT--RRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVR 285 (463)
T ss_pred CCCCCCCCccc--CCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHH
Confidence 7654 223221 1223445566789999999999999999999999999887666555555678899999987765444
Q ss_pred hhcCcHHHHHHHHHHHHhhcCChhHhhccCe-EEEecCCC--HHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHh
Q psy2887 548 MEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLN--RKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISN 624 (899)
Q Consensus 548 ~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~--~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 624 (899)
.+.|+++|++|+.. .|.++|+. .+|+..++..++.++....... ...++++++..|..
T Consensus 286 -----------------~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~--~~~~~~~a~~~L~~ 346 (463)
T TIGR01818 286 -----------------QGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVE--PKLLDPEALERLKQ 346 (463)
T ss_pred -----------------cCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCC--CCCcCHHHHHHHHh
Confidence 46789999999964 89999998 6899999999998876543221 24689999999998
Q ss_pred cccCcccccccccccHHHHHHHH
Q psy2887 625 IGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 625 ~~~~~~~~~~di~~~~~~l~~~l 647 (899)
|+|+.+++.|..+ +++++
T Consensus 347 --~~wpgNvreL~~~---~~~~~ 364 (463)
T TIGR01818 347 --LRWPGNVRQLENL---CRWLT 364 (463)
T ss_pred --CCCCChHHHHHHH---HHHHH
Confidence 8999999988888 66665
No 116
>KOG0651|consensus
Probab=99.67 E-value=2.7e-16 Score=157.41 Aligned_cols=163 Identities=25% Similarity=0.337 Sum_probs=128.3
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
..+..++|+||||+|||.+|+++|..+ ++.++.+..+.+. ++|.|+..+.+++.|..|... .|||+|
T Consensus 164 k~Pkg~ll~GppGtGKTlla~~Vaa~m----------g~nfl~v~ss~lv--~kyiGEsaRlIRemf~yA~~~-~pciif 230 (388)
T KOG0651|consen 164 KPPKGLLLYGPPGTGKTLLARAVAATM----------GVNFLKVVSSALV--DKYIGESARLIRDMFRYAREV-IPCIIF 230 (388)
T ss_pred CCCceeEEeCCCCCchhHHHHHHHHhc----------CCceEEeeHhhhh--hhhcccHHHHHHHHHHHHhhh-CceEEe
Confidence 456678999999999999999999999 8899988888888 789999999999999999865 489999
Q ss_pred EccccccccCCCCCch---hhHHHhhhhhh-------cCCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCH
Q psy2887 91 IDELHTMIGTGKVEGS---IDAGNMLKPEL-------SRGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDI 157 (899)
Q Consensus 91 iDEi~~l~~~~~~~~~---~~~~~~l~~~l-------~~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~ 157 (899)
+||+|.+...+.++++ +.+...|..++ +-+.|.+|.|||.++ -++|+|+| |++. +++|.|+.
T Consensus 231 mdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpd-----tLdpaLlRpGRldrk~~iPlpne 305 (388)
T KOG0651|consen 231 MDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPD-----TLDPALLRPGRLDRKVEIPLPNE 305 (388)
T ss_pred ehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCcc-----ccchhhcCCccccceeccCCcch
Confidence 9999999876544433 34444444444 346899999999999 89999999 9986 99999999
Q ss_pred HHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcc
Q psy2887 158 EETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYIS 196 (899)
Q Consensus 158 ~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (899)
..|..|++...+....+. .+++ ++++++++++-+
T Consensus 306 ~~r~~I~Kih~~~i~~~G--eid~---eaivK~~d~f~g 339 (388)
T KOG0651|consen 306 QARLGILKIHVQPIDFHG--EIDD---EAILKLVDGFNG 339 (388)
T ss_pred hhceeeEeeccccccccc--cccH---HHHHHHHhccCh
Confidence 999998876555433222 2333 445556655544
No 117
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.67 E-value=1.8e-15 Score=158.10 Aligned_cols=139 Identities=15% Similarity=0.177 Sum_probs=104.8
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCccccccc--chhhHHHHh-----CCCE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEG--GYLTEIVRR-----KPYS 492 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~-----~~~~ 492 (899)
.++|+||||||||++|+++|+.+ +.+++.++.+++.++ |+|+.+. +.++..++. ..+|
T Consensus 150 gllL~GPPGcGKTllAraiA~el---g~~~i~vsa~eL~sk------------~vGEsEk~IR~~F~~A~~~a~~~~aPc 214 (413)
T PLN00020 150 ILGIWGGKGQGKSFQCELVFKKM---GIEPIVMSAGELESE------------NAGEPGKLIRQRYREAADIIKKKGKMS 214 (413)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHc---CCCeEEEEHHHhhcC------------cCCcHHHHHHHHHHHHHHHhhccCCCe
Confidence 69999999999999999999999 999999999999776 8888776 566665543 3689
Q ss_pred EEEEccccccCHH------------HHHHHHHhhcCCceecCCC---ceEecCCeEEEEecCCChhhhhhhhcCcHHHHH
Q psy2887 493 LILLDEIEKANSD------------VFNILLQILDDGRLTDNRG---RTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIK 557 (899)
Q Consensus 493 vl~lDEid~~~~~------------~~~~Ll~~le~g~~~~~~g---~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~ 557 (899)
||||||||.+.+. +..+|+.++|+-.-....| ..-....+.||+|||.+..
T Consensus 215 VLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~-------------- 280 (413)
T PLN00020 215 CLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFST-------------- 280 (413)
T ss_pred EEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCccc--------------
Confidence 9999999976642 2367888887521100011 0112467889999997554
Q ss_pred HHHHHHHhhcCChhHhh--ccCeEEEecCCCHHHHHHHHHHHHH
Q psy2887 558 LAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLN 599 (899)
Q Consensus 558 ~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~~~~~~i~~~~l~ 599 (899)
+.|+|++ |||..+ ..|+.+++.+|++..++
T Consensus 281 ----------LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r 312 (413)
T PLN00020 281 ----------LYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFR 312 (413)
T ss_pred ----------CCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhc
Confidence 6788886 999865 47899999999887763
No 118
>PLN03025 replication factor C subunit; Provisional
Probab=99.67 E-value=1.1e-15 Score=166.11 Aligned_cols=182 Identities=17% Similarity=0.238 Sum_probs=129.3
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCC--ceEEecccccccccchhh
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE--SIIRIDMSEFIEKHSISR 465 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~--~~~~~~~~~~~~~~~~~~ 465 (899)
.+++||++++..|...+.... . ++++|+||||||||++|+++|+.+++.+. .++.++.++......+..
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~-------~--~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~ 83 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGN-------M--PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRN 83 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-------C--ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHH
Confidence 567899999999887765322 2 26999999999999999999999965432 344444443221111110
Q ss_pred ccCCCCCcccccccchhhHHHH------hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecC
Q psy2887 466 LIGAPPGYIGYEEGGYLTEIVR------RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSN 539 (899)
Q Consensus 466 l~g~~~~~~g~~~~~~l~~~~~------~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn 539 (899)
.+..... ...+.|++|||+|.+....|+.|+..+|. ....+.||+++|
T Consensus 84 ---------------~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~-----------~~~~t~~il~~n 137 (319)
T PLN03025 84 ---------------KIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEI-----------YSNTTRFALACN 137 (319)
T ss_pred ---------------HHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhc-----------ccCCceEEEEeC
Confidence 0111111 12357999999999999999999999985 234567888998
Q ss_pred CChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHH
Q psy2887 540 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAAL 619 (899)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~ 619 (899)
.... +.+++.+|+ .++.|.+++.+++.+.+...+ +.++ +.++++++
T Consensus 138 ~~~~------------------------i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~-------~~eg--i~i~~~~l 183 (319)
T PLN03025 138 TSSK------------------------IIEPIQSRC-AIVRFSRLSDQEILGRLMKVV-------EAEK--VPYVPEGL 183 (319)
T ss_pred Cccc------------------------cchhHHHhh-hcccCCCCCHHHHHHHHHHHH-------HHcC--CCCCHHHH
Confidence 5332 456799999 799999999999988876655 3345 67889999
Q ss_pred HHHHhcccCcccccccccccHHHHH
Q psy2887 620 KKISNIGFDLIYGARDVHGCKKSLS 644 (899)
Q Consensus 620 ~~L~~~~~~~~~~~~di~~~~~~l~ 644 (899)
++++. .+-||++.....|+
T Consensus 184 ~~i~~------~~~gDlR~aln~Lq 202 (319)
T PLN03025 184 EAIIF------TADGDMRQALNNLQ 202 (319)
T ss_pred HHHHH------HcCCCHHHHHHHHH
Confidence 99988 33478777755565
No 119
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=9.9e-16 Score=172.70 Aligned_cols=199 Identities=20% Similarity=0.279 Sum_probs=132.8
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCC----ceE-Eecccccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE----SII-RIDMSEFIEKHS 462 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~----~~~-~~~~~~~~~~~~ 462 (899)
.+++||+.+++.|..++...+ ....+||+||+|||||++|+++|+.+..... ++- +-+|..+.....
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr--------l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR--------LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRF 86 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCC
Confidence 678999999999999998543 2236899999999999999999999943210 100 001111111000
Q ss_pred hh--hccCCCCCcccccccchhhHHHH----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEE
Q psy2887 463 IS--RLIGAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVM 536 (899)
Q Consensus 463 ~~--~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ 536 (899)
.. .+-+. ...+.+..+.+...+. ..++.|+||||+|.++...++.|++.||+ ....+.||+
T Consensus 87 pDviEIDAA--s~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEE-----------PP~~v~FIL 153 (702)
T PRK14960 87 IDLIEIDAA--SRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEE-----------PPEHVKFLF 153 (702)
T ss_pred CceEEeccc--ccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-----------CCCCcEEEE
Confidence 00 00011 0122222233333332 23467999999999999999999999997 346678888
Q ss_pred ecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecH
Q psy2887 537 TSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISK 616 (899)
Q Consensus 537 tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 616 (899)
+|+.... +.+.+++|| .++.|.+++.+++.+.+...+. .++ +.+++
T Consensus 154 aTtd~~k------------------------Ip~TIlSRC-q~feFkpLs~eEI~k~L~~Il~-------kEg--I~id~ 199 (702)
T PRK14960 154 ATTDPQK------------------------LPITVISRC-LQFTLRPLAVDEITKHLGAILE-------KEQ--IAADQ 199 (702)
T ss_pred EECChHh------------------------hhHHHHHhh-heeeccCCCHHHHHHHHHHHHH-------HcC--CCCCH
Confidence 8874332 345688999 8999999999999998777763 344 77899
Q ss_pred HHHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 617 AALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 617 ~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
+++..+++.+ -||++.....+.+++
T Consensus 200 eAL~~IA~~S------~GdLRdALnLLDQaI 224 (702)
T PRK14960 200 DAIWQIAESA------QGSLRDALSLTDQAI 224 (702)
T ss_pred HHHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 9999999833 356666544455554
No 120
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.66 E-value=7.3e-16 Score=153.19 Aligned_cols=164 Identities=25% Similarity=0.337 Sum_probs=125.4
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
..--|+||+||||.||||||+.+|+++ +..+.......+.. .| .+-.++..+. ..-|||
T Consensus 50 e~lDHvLl~GPPGlGKTTLA~IIA~Em----------gvn~k~tsGp~leK----~g----DlaaiLt~Le---~~DVLF 108 (332)
T COG2255 50 EALDHVLLFGPPGLGKTTLAHIIANEL----------GVNLKITSGPALEK----PG----DLAAILTNLE---EGDVLF 108 (332)
T ss_pred CCcCeEEeeCCCCCcHHHHHHHHHHHh----------cCCeEecccccccC----hh----hHHHHHhcCC---cCCeEE
Confidence 444599999999999999999999999 65555443333321 22 2555555554 344999
Q ss_pred EccccccccCCCCCchhhHHHhhhhhhcC--------------------CceEEEEecChhHHHHhhhcCHHHHhcccc-
Q psy2887 91 IDELHTMIGTGKVEGSIDAGNMLKPELSR--------------------GELHCIGATTLNEYRQYIEKDAAFERRFQK- 149 (899)
Q Consensus 91 iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--------------------~~v~vI~at~~~~~~~~~~ld~al~~Rf~~- 149 (899)
|||+|+|.+ .+.+.|-+.||. ..+.+|+||+... .+...|+.||..
T Consensus 109 IDEIHrl~~--------~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G-----~lt~PLrdRFGi~ 175 (332)
T COG2255 109 IDEIHRLSP--------AVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAG-----MLTNPLRDRFGII 175 (332)
T ss_pred EehhhhcCh--------hHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccc-----cccchhHHhcCCe
Confidence 999999976 456677777742 3678999999998 889999999997
Q ss_pred ccccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhhhh
Q psy2887 150 ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIE 218 (899)
Q Consensus 150 i~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~~~ 218 (899)
..++.++.+|..+|+..-... .++.+++++...+++.| +..|.-|.+|+......+.+.
T Consensus 176 ~rlefY~~~eL~~Iv~r~a~~----l~i~i~~~~a~eIA~rS------RGTPRIAnRLLrRVRDfa~V~ 234 (332)
T COG2255 176 QRLEFYTVEELEEIVKRSAKI----LGIEIDEEAALEIARRS------RGTPRIANRLLRRVRDFAQVK 234 (332)
T ss_pred eeeecCCHHHHHHHHHHHHHH----hCCCCChHHHHHHHHhc------cCCcHHHHHHHHHHHHHHHHh
Confidence 779999999999999876655 56789999998888886 447888888888777666543
No 121
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.66 E-value=1.7e-15 Score=178.23 Aligned_cols=177 Identities=20% Similarity=0.308 Sum_probs=136.8
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEE
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFI 91 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~i 91 (899)
.+.+++|+||||||||++++++|+++ +.+++.++.+.+. ..+.|.....++.+|..+.. ..|+|+||
T Consensus 184 ~~~gill~G~~G~GKt~~~~~~a~~~----------~~~f~~is~~~~~--~~~~g~~~~~~~~~f~~a~~-~~P~IifI 250 (644)
T PRK10733 184 IPKGVLMVGPPGTGKTLLAKAIAGEA----------KVPFFTISGSDFV--EMFVGVGASRVRDMFEQAKK-AAPCIIFI 250 (644)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEehHHhH--HhhhcccHHHHHHHHHHHHh-cCCcEEEe
Confidence 35679999999999999999999998 7889988887766 45677788889999999874 45999999
Q ss_pred ccccccccCCCCC---ch---hhHHHhhhhhhc----CCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCHH
Q psy2887 92 DELHTMIGTGKVE---GS---IDAGNMLKPELS----RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIE 158 (899)
Q Consensus 92 DEi~~l~~~~~~~---~~---~~~~~~l~~~l~----~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~~ 158 (899)
||+|.+...+... +. ....+.|+..|+ ...+++|+|||.++ .+|++++| ||+. |.++.|+.+
T Consensus 251 DEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~-----~lD~Al~RpgRfdr~i~v~~Pd~~ 325 (644)
T PRK10733 251 DEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPD-----VLDPALLRPGRFDRQVVVGLPDVR 325 (644)
T ss_pred hhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChh-----hcCHHHhCCcccceEEEcCCCCHH
Confidence 9999998765431 11 124445544443 45799999999999 89999998 9986 999999999
Q ss_pred HHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhh
Q psy2887 159 ETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIK 216 (899)
Q Consensus 159 e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~ 216 (899)
+|.+||+.++...+...++ .+..+++.+.+|. +++...++.+|+..+.
T Consensus 326 ~R~~Il~~~~~~~~l~~~~-----d~~~la~~t~G~s-----gadl~~l~~eAa~~a~ 373 (644)
T PRK10733 326 GREQILKVHMRRVPLAPDI-----DAAIIARGTPGFS-----GADLANLVNEAALFAA 373 (644)
T ss_pred HHHHHHHHHhhcCCCCCcC-----CHHHHHhhCCCCC-----HHHHHHHHHHHHHHHH
Confidence 9999999988765432222 2344566665554 4788888888876654
No 122
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.66 E-value=1.7e-15 Score=174.19 Aligned_cols=206 Identities=23% Similarity=0.329 Sum_probs=139.3
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHh-------ccCCCceEEeccccc--c
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACI-------FNNEESIIRIDMSEF--I 458 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l-------~~~~~~~~~~~~~~~--~ 458 (899)
.+++||+.+++.+..++.. + .+ .++||+||||||||++|+++++.+ +..+.+|+.+||... .
T Consensus 65 ~~iiGqs~~i~~l~~al~~-------~-~~-~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~ 135 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCG-------P-NP-QHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFD 135 (531)
T ss_pred HHeeCcHHHHHHHHHHHhC-------C-CC-ceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCC
Confidence 4689999999999866421 1 12 279999999999999999998764 222578999998642 2
Q ss_pred cccchhhccCCC--CCcccc-----ccc-chhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecC------CC
Q psy2887 459 EKHSISRLIGAP--PGYIGY-----EEG-GYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDN------RG 524 (899)
Q Consensus 459 ~~~~~~~l~g~~--~~~~g~-----~~~-~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~------~g 524 (899)
.......++|.. +.|.|. ... ....+.+..+.+++||||||+.+++..|+.|+++|+++.+... .+
T Consensus 136 ~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~ 215 (531)
T TIGR02902 136 ERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSEN 215 (531)
T ss_pred ccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccC
Confidence 211122334421 112111 000 1123355667789999999999999999999999998765421 11
Q ss_pred ce-----------EecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHH
Q psy2887 525 RT-----------INFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSI 593 (899)
Q Consensus 525 ~~-----------~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i 593 (899)
.. .-..++++|++|+..++ .++|++.+|| ..+.|+|++.+++.+|
T Consensus 216 ~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~-----------------------~L~paLrsR~-~~I~f~pL~~eei~~I 271 (531)
T TIGR02902 216 PNIPSHIHDIFQNGLPADFRLIGATTRNPE-----------------------EIPPALRSRC-VEIFFRPLLDEEIKEI 271 (531)
T ss_pred cccccchhhhcccCcccceEEEEEecCCcc-----------------------cCChHHhhhh-heeeCCCCCHHHHHHH
Confidence 10 01245567777765443 2678899999 6889999999999999
Q ss_pred HHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCccccccccccc
Q psy2887 594 ANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGC 639 (899)
Q Consensus 594 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~ 639 (899)
++..+++ .+ +.+++++++.+.. |.+ +.|++...
T Consensus 272 l~~~a~k-------~~--i~is~~al~~I~~--y~~--n~Rel~nl 304 (531)
T TIGR02902 272 AKNAAEK-------IG--INLEKHALELIVK--YAS--NGREAVNI 304 (531)
T ss_pred HHHHHHH-------cC--CCcCHHHHHHHHH--hhh--hHHHHHHH
Confidence 9887743 23 6789999998877 555 34555554
No 123
>KOG2028|consensus
Probab=99.66 E-value=7.9e-16 Score=156.77 Aligned_cols=176 Identities=22% Similarity=0.312 Sum_probs=130.7
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHh----cCCCE
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN----NQKDI 87 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~----~~~~~ 87 (899)
+-+.++|.|||||||||||+.|+...... .+.++++ +...++. +.++.+|+.+.+ .....
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~-------Syrfvel--SAt~a~t-------~dvR~ife~aq~~~~l~krkT 224 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKH-------SYRFVEL--SATNAKT-------NDVRDIFEQAQNEKSLTKRKT 224 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCC-------ceEEEEE--eccccch-------HHHHHHHHHHHHHHhhhccee
Confidence 34579999999999999999999865221 2334444 3333222 357888887763 24578
Q ss_pred EEEEccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHHHHHHHHHhh
Q psy2887 88 IIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGL 167 (899)
Q Consensus 88 iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~il~~~ 167 (899)
||||||+|++... .++.|++.+|.|.|.+|++|+..+ .+.++.+|++||.++.+...+.+....||.+-
T Consensus 225 ilFiDEiHRFNks--------QQD~fLP~VE~G~I~lIGATTENP---SFqln~aLlSRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 225 ILFIDEIHRFNKS--------QQDTFLPHVENGDITLIGATTENP---SFQLNAALLSRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred EEEeHHhhhhhhh--------hhhcccceeccCceEEEecccCCC---ccchhHHHHhccceeEeccCCHHHHHHHHHHH
Confidence 9999999998753 345899999999999999999887 67899999999999999999999999999764
Q ss_pred hhhhhc---------ccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhhhhhc
Q psy2887 168 QKKYEV---------HHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEID 220 (899)
Q Consensus 168 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~~~~~ 220 (899)
+..+.. +..+.+++.++++++.++.+... .+.+.++.++..+..+..
T Consensus 294 ia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR------~aLN~Lems~~m~~tr~g 349 (554)
T KOG2028|consen 294 IASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR------AALNALEMSLSMFCTRSG 349 (554)
T ss_pred HHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH------HHHHHHHHHHHHHHhhcC
Confidence 432211 11246888999999999988654 566667766555544433
No 124
>PRK15115 response regulator GlrR; Provisional
Probab=99.66 E-value=1.2e-15 Score=174.90 Aligned_cols=227 Identities=16% Similarity=0.156 Sum_probs=167.8
Q ss_pred cCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccC
Q psy2887 389 RVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIG 468 (899)
Q Consensus 389 ~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g 468 (899)
.++|....+..+...+...... ..++++.|++|||||++|+++++.....+.+|+.++|..+......+.+||
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~-------~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg 207 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQS-------DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFG 207 (444)
T ss_pred cccccCHHHHHHHHHHHhhccC-------CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcC
Confidence 3556666665555554433211 125999999999999999999999877788999999999876655667888
Q ss_pred CCCCcccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhh
Q psy2887 469 APPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEM 548 (899)
Q Consensus 469 ~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~ 548 (899)
+..+....... .....+..+.+++||||||+.+++..|..|+.+|+++.+....+.+....++.+|+||+.+......
T Consensus 208 ~~~~~~~~~~~-~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~- 285 (444)
T PRK15115 208 HARGAFTGAVS-NREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMA- 285 (444)
T ss_pred CCcCCCCCCcc-CCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHH-
Confidence 76553221111 1223345566789999999999999999999999998876544444444578999999976554333
Q ss_pred hcCcHHHHHHHHHHHHhhcCChhHhhccCe-EEEecCCCH--HHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhc
Q psy2887 549 EKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNI 625 (899)
Q Consensus 549 ~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~ 625 (899)
.+.|+++|+.|++. .|.++|+.+ +|+..+++.++.++...... ....+++++++.|..
T Consensus 286 ----------------~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~--~~~~~~~~a~~~L~~- 346 (444)
T PRK15115 286 ----------------RGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKP--FVRAFSTDAMKRLMT- 346 (444)
T ss_pred ----------------cCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCC--CCCCcCHHHHHHHHh-
Confidence 45899999999964 778888875 78999999998876554322 123689999999998
Q ss_pred ccCcccccccccccHHHHHHHH
Q psy2887 626 GFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 626 ~~~~~~~~~di~~~~~~l~~~l 647 (899)
|+|+.+++.+.++ +++++
T Consensus 347 -~~WpgNvreL~~~---i~~~~ 364 (444)
T PRK15115 347 -ASWPGNVRQLVNV---IEQCV 364 (444)
T ss_pred -CCCCChHHHHHHH---HHHHH
Confidence 9999889888887 66655
No 125
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.65 E-value=4.7e-16 Score=174.16 Aligned_cols=163 Identities=22% Similarity=0.359 Sum_probs=114.0
Q ss_pred ccCCChHHHHHHHHHHHHHh--------hcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccC-------CCceEEe
Q psy2887 388 KRVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN-------EESIIRI 452 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~--------~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~-------~~~~~~~ 452 (899)
.+|.|.+..++.+..++... ..++..| ..+||+||||||||++|+++|+.+... ...|+.+
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p----~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v 257 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPP----KGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNI 257 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCC----cceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEec
Confidence 45668888888888887532 2233333 259999999999999999999998321 1123344
Q ss_pred cccccccccchhhccCCCCCccccccc--chhhHHHHh----CCCEEEEEccccccCH------------HHHHHHHHhh
Q psy2887 453 DMSEFIEKHSISRLIGAPPGYIGYEEG--GYLTEIVRR----KPYSLILLDEIEKANS------------DVFNILLQIL 514 (899)
Q Consensus 453 ~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~----~~~~vl~lDEid~~~~------------~~~~~Ll~~l 514 (899)
..+++.+. |+|..+. +.++..++. ..++||||||+|.+.. .+.+.|+..|
T Consensus 258 ~~~eLl~k------------yvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 258 KGPELLNK------------YVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred cchhhccc------------ccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 44443322 5555443 445555544 2578999999997642 2457788888
Q ss_pred cCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhh--ccCeEEEecCCCHHHHHH
Q psy2887 515 DDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILS 592 (899)
Q Consensus 515 e~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~~~~~~ 592 (899)
+.-. ...++++|+|||... .++|.+++ |||..|.|++|+.++..+
T Consensus 326 Dgl~---------~~~~ViVI~ATN~~d------------------------~LDpALlRpGRfD~~I~~~~Pd~e~r~~ 372 (512)
T TIGR03689 326 DGVE---------SLDNVIVIGASNRED------------------------MIDPAILRPGRLDVKIRIERPDAEAAAD 372 (512)
T ss_pred cccc---------cCCceEEEeccCChh------------------------hCCHhhcCccccceEEEeCCCCHHHHHH
Confidence 7511 235788999999633 36788885 999999999999999999
Q ss_pred HHHHHHH
Q psy2887 593 IANIQLN 599 (899)
Q Consensus 593 i~~~~l~ 599 (899)
|+..++.
T Consensus 373 Il~~~l~ 379 (512)
T TIGR03689 373 IFSKYLT 379 (512)
T ss_pred HHHHHhh
Confidence 9998874
No 126
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.65 E-value=1.3e-15 Score=143.55 Aligned_cols=121 Identities=26% Similarity=0.406 Sum_probs=99.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEEcccc
Q psy2887 16 PVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELH 95 (899)
Q Consensus 16 iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~ 95 (899)
|||+||||||||++|+.+|+.+ +.+++.+++..+. +.+.++.++.+..+|..+.....|+||||||+|
T Consensus 1 ill~G~~G~GKT~l~~~la~~l----------~~~~~~i~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d 68 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL----------GFPFIEIDGSELI--SSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEID 68 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT----------TSEEEEEETTHHH--TSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGG
T ss_pred CEEECcCCCCeeHHHHHHHhhc----------ccccccccccccc--cccccccccccccccccccccccceeeeeccch
Confidence 6899999999999999999999 8899999999888 557889999999999998755458999999999
Q ss_pred ccccCCCC---CchhhHHHhhhhhhcC-----CceEEEEecChhHHHHhhhcCHHHH-hcccc-cccc
Q psy2887 96 TMIGTGKV---EGSIDAGNMLKPELSR-----GELHCIGATTLNEYRQYIEKDAAFE-RRFQK-ILVE 153 (899)
Q Consensus 96 ~l~~~~~~---~~~~~~~~~l~~~l~~-----~~v~vI~at~~~~~~~~~~ld~al~-~Rf~~-i~l~ 153 (899)
.+.+.... .......+.|...++. +.+.+|++||..+ .+++++. +||+. ++++
T Consensus 69 ~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~-----~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 69 KLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPD-----KIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp GTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGG-----GSCHHHHSTTSEEEEEE-
T ss_pred hcccccccccccccccccceeeecccccccccccceeEEeeCChh-----hCCHhHHhCCCcEEEEcC
Confidence 99987621 1223455566666632 4699999999988 9999999 99985 6664
No 127
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=2.3e-15 Score=169.31 Aligned_cols=199 Identities=21% Similarity=0.341 Sum_probs=131.7
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCC----ceEEe-ccccccccc-
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE----SIIRI-DMSEFIEKH- 461 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~----~~~~~-~~~~~~~~~- 461 (899)
.+++||++++..|..++...+ ..+++||+|||||||||+|+++|+.+..... ++-.. .|..+....
T Consensus 14 ~divGq~~i~~~L~~~i~~~~--------l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~ 85 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS--------ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTF 85 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCC
Confidence 678999999999988877543 2235899999999999999999999843211 11000 000000000
Q ss_pred -chhhccCCCCCcccccccchhhHHHHhC----CCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEE
Q psy2887 462 -SISRLIGAPPGYIGYEEGGYLTEIVRRK----PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVM 536 (899)
Q Consensus 462 -~~~~l~g~~~~~~g~~~~~~l~~~~~~~----~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ 536 (899)
....+-+. ...|.+..+.+.+.+... ...||||||++.+....++.|+..+++ +..++++|+
T Consensus 86 ~dv~el~aa--~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~-----------p~~~vv~Il 152 (472)
T PRK14962 86 MDVIELDAA--SNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEE-----------PPSHVVFVL 152 (472)
T ss_pred CccEEEeCc--ccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHh-----------CCCcEEEEE
Confidence 00001000 112222223444444332 357999999999999999999999997 335677777
Q ss_pred ecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecH
Q psy2887 537 TSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISK 616 (899)
Q Consensus 537 tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 616 (899)
+|+... .+.+.+.+|| .++.|.|++.+++..++...+. ..+ +.+++
T Consensus 153 attn~~------------------------kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~-------~eg--i~i~~ 198 (472)
T PRK14962 153 ATTNLE------------------------KVPPTIISRC-QVIEFRNISDELIIKRLQEVAE-------AEG--IEIDR 198 (472)
T ss_pred EeCChH------------------------hhhHHHhcCc-EEEEECCccHHHHHHHHHHHHH-------HcC--CCCCH
Confidence 776321 2466789999 7999999999999888776663 234 67899
Q ss_pred HHHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 617 AALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 617 ~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
+++++|++ ..-||+......|+++.
T Consensus 199 eal~~Ia~------~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 199 EALSFIAK------RASGGLRDALTMLEQVW 223 (472)
T ss_pred HHHHHHHH------HhCCCHHHHHHHHHHHH
Confidence 99999998 23466666666666654
No 128
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.64 E-value=2.4e-15 Score=166.97 Aligned_cols=163 Identities=28% Similarity=0.402 Sum_probs=119.5
Q ss_pred hccCCChHHHHHHHHHHHHHh--------hcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccc
Q psy2887 387 CKRVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 458 (899)
Q Consensus 387 ~~~v~gq~~~~~~l~~~i~~~--------~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~ 458 (899)
..++.|.+..++.+...+... ..|+..| .++||+||||||||++|+++|+.+ +.+|+.++++++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p----~gvLL~GppGtGKT~lAkaia~~~---~~~~i~v~~~~l~ 202 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPP----KGVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGSELV 202 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCC----CceEEECCCCCChHHHHHHHHHHh---CCCEEEeehHHHh
Confidence 357889999999998887432 1233222 259999999999999999999998 7889999888875
Q ss_pred cccchhhccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccC-----------HHHHHHHHHhhcCCceecCCCc
Q psy2887 459 EKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGR 525 (899)
Q Consensus 459 ~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~ 525 (899)
.. |+|..+. +.++..++...++||||||+|.+. +.++..|++++..-.-.
T Consensus 203 ~~------------~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~----- 265 (389)
T PRK03992 203 QK------------FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGF----- 265 (389)
T ss_pred Hh------------hccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcccc-----
Confidence 43 4443333 456677777778999999999873 45566666665431100
Q ss_pred eEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHh--hccCeEEEecCCCHHHHHHHHHHHH
Q psy2887 526 TINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQL 598 (899)
Q Consensus 526 ~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~~~~~~i~~~~l 598 (899)
....+++||+|||... .+++.++ +|||..|.|++|+.++..+|++.++
T Consensus 266 -~~~~~v~VI~aTn~~~------------------------~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~ 315 (389)
T PRK03992 266 -DPRGNVKIIAATNRID------------------------ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHT 315 (389)
T ss_pred -CCCCCEEEEEecCChh------------------------hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHh
Confidence 0224678999999642 2556676 4999999999999999999988665
No 129
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=2.5e-15 Score=172.58 Aligned_cols=183 Identities=20% Similarity=0.277 Sum_probs=125.5
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCC--ceEEeccc---ccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE--SIIRIDMS---EFIEKHS 462 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~--~~~~~~~~---~~~~~~~ 462 (899)
.+|+||+.+++.|.+++...+. .+.+||+||+|||||++|+++|+.+..... ..-+..|. .+.....
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl--------~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRL--------HHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRF 87 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCC
Confidence 6788999999999999986442 124799999999999999999999954211 00011111 1110000
Q ss_pred hh-hccCCCCCcccccccchhhHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEe
Q psy2887 463 IS-RLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMT 537 (899)
Q Consensus 463 ~~-~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 537 (899)
.. ..+.. ....+.+..+.+.+.+.. ..+.|+||||+|+++...+|.||+.||+ +..+++||++
T Consensus 88 ~D~ieida-as~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEE-----------Pp~~v~FIL~ 155 (647)
T PRK07994 88 VDLIEIDA-ASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-----------PPEHVKFLLA 155 (647)
T ss_pred CCceeecc-cccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHc-----------CCCCeEEEEe
Confidence 00 00000 001232333444444432 3467999999999999999999999998 4577888888
Q ss_pred cCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHH
Q psy2887 538 SNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKA 617 (899)
Q Consensus 538 sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 617 (899)
|+.... +.+.+++|| ..+.|.+++.+++.+.+...+.. ++ +.++++
T Consensus 156 Tt~~~k------------------------Ll~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~-------e~--i~~e~~ 201 (647)
T PRK07994 156 TTDPQK------------------------LPVTILSRC-LQFHLKALDVEQIRQQLEHILQA-------EQ--IPFEPR 201 (647)
T ss_pred cCCccc------------------------cchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHH-------cC--CCCCHH
Confidence 885433 455689999 99999999999999888777632 34 677889
Q ss_pred HHHHHHh
Q psy2887 618 ALKKISN 624 (899)
Q Consensus 618 ~~~~L~~ 624 (899)
++..|+.
T Consensus 202 aL~~Ia~ 208 (647)
T PRK07994 202 ALQLLAR 208 (647)
T ss_pred HHHHHHH
Confidence 9988887
No 130
>KOG0731|consensus
Probab=99.64 E-value=1.9e-15 Score=172.16 Aligned_cols=164 Identities=26% Similarity=0.378 Sum_probs=129.6
Q ss_pred hccCCChHHHHHHHHHHHHHh-------hcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccccc
Q psy2887 387 CKRVVGQDEAISAVSNAIRRS-------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 459 (899)
Q Consensus 387 ~~~v~gq~~~~~~l~~~i~~~-------~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 459 (899)
.++|.|.++|++.|.+.+... +.|..-|+ .+||+||||||||.||||+|.+. +.||+.+++++|..
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPk----GvLL~GPPGTGKTLLAKAiAGEA---gVPF~svSGSEFvE 382 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPK----GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSVSGSEFVE 382 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcC----ceEEECCCCCcHHHHHHHHhccc---CCceeeechHHHHH
Confidence 478999999999999988543 34444444 49999999999999999999998 99999999999976
Q ss_pred ccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEccccccCH---------------HHHHHHHHhhcCCceecCCC
Q psy2887 460 KHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANS---------------DVFNILLQILDDGRLTDNRG 524 (899)
Q Consensus 460 ~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~---------------~~~~~Ll~~le~g~~~~~~g 524 (899)
. +. -+|.+..+.+|...+...|||+|+||||.... ..+|+||..||.-.
T Consensus 383 ~-----~~-----g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~------ 446 (774)
T KOG0731|consen 383 M-----FV-----GVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE------ 446 (774)
T ss_pred H-----hc-----ccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc------
Confidence 5 11 12333347899999999999999999985542 46788888888521
Q ss_pred ceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHh--hccCeEEEecCCCHHHHHHHHHHHHHH
Q psy2887 525 RTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQLNI 600 (899)
Q Consensus 525 ~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~~~~~~i~~~~l~~ 600 (899)
...+++++++||.+. .++++|+ +|||..|....++.....+|++.++..
T Consensus 447 ---~~~~vi~~a~tnr~d------------------------~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~ 497 (774)
T KOG0731|consen 447 ---TSKGVIVLAATNRPD------------------------ILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRK 497 (774)
T ss_pred ---CCCcEEEEeccCCcc------------------------ccCHHhcCCCccccceeccCCchhhhHHHHHHHhhc
Confidence 126688889999643 2566666 899999999999999999999888843
No 131
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=2.5e-15 Score=170.90 Aligned_cols=199 Identities=20% Similarity=0.267 Sum_probs=132.4
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCce--EEeccc---ccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI--IRIDMS---EFIEKHS 462 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~--~~~~~~---~~~~~~~ 462 (899)
.+++||+++++.|.+++...+. .+.+||+||+|||||++|+++|+.++.....- -+-.|. .+.....
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l--------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~ 87 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYL--------HHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRF 87 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCC--------CeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCC
Confidence 6789999999999999976442 22589999999999999999999995422100 000111 1100000
Q ss_pred --hhhccCCCCCcccccccchhhHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEE
Q psy2887 463 --ISRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVM 536 (899)
Q Consensus 463 --~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ 536 (899)
+..+-+ ....|.++.+.+.+.+.. +.++|+||||+|.+++..+|.|++.||+ +..+++||+
T Consensus 88 ~d~~eida--as~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEe-----------pp~~~~fIl 154 (509)
T PRK14958 88 PDLFEVDA--ASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEE-----------PPSHVKFIL 154 (509)
T ss_pred ceEEEEcc--cccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhc-----------cCCCeEEEE
Confidence 000101 012233333444443332 3467999999999999999999999998 456788888
Q ss_pred ecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecH
Q psy2887 537 TSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISK 616 (899)
Q Consensus 537 tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 616 (899)
+|+... .+.+.+.+|| ..+.|.+++.+++.+.+...+. .++ +.+++
T Consensus 155 attd~~------------------------kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~-------~eg--i~~~~ 200 (509)
T PRK14958 155 ATTDHH------------------------KLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLK-------EEN--VEFEN 200 (509)
T ss_pred EECChH------------------------hchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHH-------HcC--CCCCH
Confidence 887432 2445589999 8999999999999888776663 345 66889
Q ss_pred HHHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 617 AALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 617 ~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
+++..+++.+ -||+......+++++
T Consensus 201 ~al~~ia~~s------~GslR~al~lLdq~i 225 (509)
T PRK14958 201 AALDLLARAA------NGSVRDALSLLDQSI 225 (509)
T ss_pred HHHHHHHHHc------CCcHHHHHHHHHHHH
Confidence 9999998732 255555444455444
No 132
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=4.2e-15 Score=170.11 Aligned_cols=201 Identities=19% Similarity=0.251 Sum_probs=134.9
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCce--EEecc---cccccc--
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI--IRIDM---SEFIEK-- 460 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~--~~~~~---~~~~~~-- 460 (899)
.+++||+++++.|..++...+. .+.+||+||+|||||++|+++|+.++....+- -+..| -.+...
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~--------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRI--------NHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccC
Confidence 6788999999999999875431 22479999999999999999999995322110 01111 111100
Q ss_pred cchhhccCCCCCcccccccchhhHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEE
Q psy2887 461 HSISRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVM 536 (899)
Q Consensus 461 ~~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ 536 (899)
.....+.-......|.++.+.+.+.+.. +.+.|+||||++.+....+|.||+.||+ +..+++||+
T Consensus 85 ~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEE-----------pp~~~~fIL 153 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEE-----------PPEHLIFIF 153 (584)
T ss_pred CCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhc-----------CCCCeEEEE
Confidence 0000000001112233444445444433 3567999999999999999999999998 457888888
Q ss_pred ecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecH
Q psy2887 537 TSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISK 616 (899)
Q Consensus 537 tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 616 (899)
+|+... .+.+.+.+|+ ..+.|.+++.+++.+.+...+ ...+ +.+++
T Consensus 154 ~tte~~------------------------kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~-------~~eg--i~i~~ 199 (584)
T PRK14952 154 ATTEPE------------------------KVLPTIRSRT-HHYPFRLLPPRTMRALIARIC-------EQEG--VVVDD 199 (584)
T ss_pred EeCChH------------------------hhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHH-------HHcC--CCCCH
Confidence 887432 2455689998 899999999999988876666 3345 67889
Q ss_pred HHHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 617 AALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 617 ~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
+++.++++.+ -||+......|++++
T Consensus 200 ~al~~Ia~~s------~GdlR~aln~Ldql~ 224 (584)
T PRK14952 200 AVYPLVIRAG------GGSPRDTLSVLDQLL 224 (584)
T ss_pred HHHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 9999998732 355555544466555
No 133
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.64 E-value=2.7e-15 Score=165.33 Aligned_cols=160 Identities=24% Similarity=0.402 Sum_probs=116.8
Q ss_pred ccCCChHHHHHHHHHHHHHh--------hcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 459 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~--------~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 459 (899)
.+|.|.+.+++.|...+... ..|+..| ..+||+||||||||++|+++|+.+ +.+++.+.++++..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~p----kgvLL~GppGTGKT~LAkalA~~l---~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPP----RGVLLYGPPGTGKTMLAKAVAHHT---TATFIRVVGSEFVQ 217 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCC----ceEEEECCCCCCHHHHHHHHHHhc---CCCEEEEehHHHHH
Confidence 57899999999999888532 1233222 269999999999999999999998 78899888776643
Q ss_pred ccchhhccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccC-----------HHHHH---HHHHhhcCCceecCC
Q psy2887 460 KHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFN---ILLQILDDGRLTDNR 523 (899)
Q Consensus 460 ~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~-----------~~~~~---~Ll~~le~g~~~~~~ 523 (899)
. |+|..+. +.++..++...++||||||+|.+. ..++. .|+..++.-.
T Consensus 218 k------------~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~----- 280 (398)
T PTZ00454 218 K------------YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD----- 280 (398)
T ss_pred H------------hcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC-----
Confidence 3 4443332 456777777888999999999763 23333 4444444200
Q ss_pred CceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHh--hccCeEEEecCCCHHHHHHHHHHHHH
Q psy2887 524 GRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQLN 599 (899)
Q Consensus 524 g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~~~~~~i~~~~l~ 599 (899)
...++++|+|||... .++|.++ +|||..|.|++|+.++..+|++..+.
T Consensus 281 ----~~~~v~VI~aTN~~d------------------------~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~ 330 (398)
T PTZ00454 281 ----QTTNVKVIMATNRAD------------------------TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITS 330 (398)
T ss_pred ----CCCCEEEEEecCCch------------------------hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHh
Confidence 124678999999643 2567776 49999999999999999999887663
No 134
>KOG2170|consensus
Probab=99.64 E-value=4.1e-15 Score=149.01 Aligned_cols=239 Identities=22% Similarity=0.341 Sum_probs=159.6
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccc
Q psy2887 379 LLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 458 (899)
Q Consensus 379 l~~l~~~l~~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~ 458 (899)
+..++..|.+.++||.-+++.|..+++..... ..|++|. .+-|+|+|||||..+++.||+.++..+... .+.
T Consensus 73 ~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n-~~p~KPL-vLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S------~~V 144 (344)
T KOG2170|consen 73 LDGLEKDLARALFGQHLAKQLVVNALKSHWAN-PNPRKPL-VLSFHGWTGTGKNYVAEIIAENLYRGGLRS------PFV 144 (344)
T ss_pred chHHHHHHHHHhhchHHHHHHHHHHHHHHhcC-CCCCCCe-EEEecCCCCCchhHHHHHHHHHHHhccccc------hhH
Confidence 55678888999999999999999999876644 4488887 677999999999999999999998766432 111
Q ss_pred cccchhhccCCCCCcc-ccccc--chhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEE
Q psy2887 459 EKHSISRLIGAPPGYI-GYEEG--GYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIV 535 (899)
Q Consensus 459 ~~~~~~~l~g~~~~~~-g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI 535 (899)
.......-+-++ .++ -+.+. +.+.+.+..++.++++|||+|+|++..++.|-..++-- +....+++.++++|
T Consensus 145 ~~fvat~hFP~~-~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyy----p~v~gv~frkaIFI 219 (344)
T KOG2170|consen 145 HHFVATLHFPHA-SKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYY----PQVSGVDFRKAIFI 219 (344)
T ss_pred HHhhhhccCCCh-HHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhccc----cccccccccceEEE
Confidence 110000000000 011 11111 45666777888999999999999999999999999841 12223688999999
Q ss_pred EecCCChhhhhhhhc------C-----cHHHHHHHHHHHH-----hhcCChhHh--hccCeEEEecCCCHHHHHHHHHHH
Q psy2887 536 MTSNLGSDKIKEMEK------G-----DKEIIKLAVMNEV-----KIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQ 597 (899)
Q Consensus 536 ~tsn~~~~~~~~~~~------~-----~~~~~~~~~~~~l-----~~~~~~~l~--~R~~~~i~f~~l~~~~~~~i~~~~ 597 (899)
+-||.+.++|.+..- . .-..++..++... .+.....++ .++|..|+|.|++..+...+++..
T Consensus 220 fLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r~e 299 (344)
T KOG2170|consen 220 FLSNAGGSEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIRAE 299 (344)
T ss_pred EEcCCcchHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHHHHHHH
Confidence 999999988876521 1 1122232222211 111122232 677899999999999999998877
Q ss_pred HHHHHHHHHhcCcceeecHHHHHHHHhc-c-cCccccccccccc
Q psy2887 598 LNILKNKLLKMNMDLKISKAALKKISNI-G-FDLIYGARDVHGC 639 (899)
Q Consensus 598 l~~~~~~~~~~~~~~~~~~~~~~~L~~~-~-~~~~~~~~di~~~ 639 (899)
+ ..+| +..+++.++.+++. . |+...-+-...||
T Consensus 300 l-------~~rg--~~~d~~~~erva~~l~ffp~~~k~Fs~sGC 334 (344)
T KOG2170|consen 300 L-------RKRG--LAPDQDFVERVANSLSFFPESSKLFSSSGC 334 (344)
T ss_pred H-------Hhcc--cccchHHHHHHHHhhcccccccceeecccc
Confidence 7 3345 66677777777652 2 3333334444555
No 135
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=2.7e-15 Score=167.60 Aligned_cols=201 Identities=16% Similarity=0.199 Sum_probs=134.6
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCc----eE-Eecccccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES----II-RIDMSEFIEKHS 462 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~----~~-~~~~~~~~~~~~ 462 (899)
.+++||+.+++.+.+++...+. ..++||+||+||||||+|+++|+.+.....+ +- +-+|..+.....
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri--------~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~ 84 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKI--------PQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNH 84 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--------CceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCC
Confidence 6788999999999988875431 2379999999999999999999988322111 00 001111111111
Q ss_pred hhhccCCCCCcccccccchhhHHHHhC----CCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEec
Q psy2887 463 ISRLIGAPPGYIGYEEGGYLTEIVRRK----PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTS 538 (899)
Q Consensus 463 ~~~l~g~~~~~~g~~~~~~l~~~~~~~----~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ts 538 (899)
...+.-......|.++.+.+.+.+... .+.|+||||++.++...+|.|++.||+ +...++||++|
T Consensus 85 ~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEe-----------Pp~~v~fIlat 153 (491)
T PRK14964 85 PDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEE-----------PAPHVKFILAT 153 (491)
T ss_pred CCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhC-----------CCCCeEEEEEe
Confidence 110000111123333444455544433 457999999999999999999999998 45678888888
Q ss_pred CCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHH
Q psy2887 539 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAA 618 (899)
Q Consensus 539 n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~ 618 (899)
+... .+.+.+.+|| ..+.|.+++.+++.+.+...+. .++ +.+++++
T Consensus 154 te~~------------------------Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~-------~Eg--i~i~~eA 199 (491)
T PRK14964 154 TEVK------------------------KIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAK-------KEN--IEHDEES 199 (491)
T ss_pred CChH------------------------HHHHHHHHhh-eeeecccccHHHHHHHHHHHHH-------HcC--CCCCHHH
Confidence 7322 2445689999 8999999999999988776663 344 6789999
Q ss_pred HHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 619 LKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 619 ~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
+..+++.+ -||+......|++++
T Consensus 200 L~lIa~~s------~GslR~alslLdqli 222 (491)
T PRK14964 200 LKLIAENS------SGSMRNALFLLEQAA 222 (491)
T ss_pred HHHHHHHc------CCCHHHHHHHHHHHH
Confidence 99998833 245555544466555
No 136
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=3.7e-15 Score=164.24 Aligned_cols=171 Identities=20% Similarity=0.232 Sum_probs=129.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCc--------------cCCCeEEEEehhhhhcCcccCchHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNS--------------LLSKKILLLDIALLLAGTKYRGEFEDRLKKILK 78 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~--------------l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~ 78 (899)
...+||+|||||||||+|+.+|+.+.....+.. .....+++++... ..| ...++++.+
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas------~~g--Vd~IReL~e 111 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAAS------NRG--IENIRELRD 111 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhh------ccc--HHHHHHHHH
Confidence 334899999999999999999998854211100 0011234343211 111 224555555
Q ss_pred HHHh---cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhcccccccc
Q psy2887 79 EISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVE 153 (899)
Q Consensus 79 ~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~ 153 (899)
.+.. .+...|+||||+|.|.. ++.+.|+..++. +.+++|++|+... .+.+++++||..+.|.
T Consensus 112 ~l~~~p~~g~~KV~IIDEah~Ls~--------~A~NALLKtLEEPp~~viFILaTte~~-----kI~~TI~SRCq~~~f~ 178 (484)
T PRK14956 112 NVKFAPMGGKYKVYIIDEVHMLTD--------QSFNALLKTLEEPPAHIVFILATTEFH-----KIPETILSRCQDFIFK 178 (484)
T ss_pred HHHhhhhcCCCEEEEEechhhcCH--------HHHHHHHHHhhcCCCceEEEeecCChh-----hccHHHHhhhheeeec
Confidence 5431 23456999999999954 678899999987 6899999999887 8999999999999999
Q ss_pred CCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 154 EPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 154 ~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
.++.++..++++.++.. .++.++++++..+++.++|.++ +++.+++++.+.
T Consensus 179 ~ls~~~i~~~L~~i~~~----Egi~~e~eAL~~Ia~~S~Gd~R------dAL~lLeq~i~~ 229 (484)
T PRK14956 179 KVPLSVLQDYSEKLCKI----ENVQYDQEGLFWIAKKGDGSVR------DMLSFMEQAIVF 229 (484)
T ss_pred CCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCChHH------HHHHHHHHHHHh
Confidence 99999999999888876 5788999999999999998766 899999987754
No 137
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=4.1e-15 Score=176.73 Aligned_cols=199 Identities=18% Similarity=0.267 Sum_probs=134.6
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCc--eEEeccccccc---c--
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES--IIRIDMSEFIE---K-- 460 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~--~~~~~~~~~~~---~-- 460 (899)
.+|+||+.+++.|..++...+.. +.+||+||+|||||++|++||+.|+....+ --+..|..+.. .
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~--------Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~ 86 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRIN--------HAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGP 86 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCC--------ceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCC
Confidence 67889999999999998864421 258999999999999999999999532111 01111211110 0
Q ss_pred --cchhhccCCCCCcccccccchhhHHHH----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEE
Q psy2887 461 --HSISRLIGAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTII 534 (899)
Q Consensus 461 --~~~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~i 534 (899)
..+..+-+. ..+|.++.+.+.+.+. ...++|+||||+|+|+...+|.||++||+ ...+++|
T Consensus 87 ~~~dv~eidaa--s~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEE-----------pP~~~~f 153 (824)
T PRK07764 87 GSLDVTEIDAA--SHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEE-----------PPEHLKF 153 (824)
T ss_pred CCCcEEEeccc--ccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhC-----------CCCCeEE
Confidence 000011110 1123333344433332 24568999999999999999999999998 4577888
Q ss_pred EEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceee
Q psy2887 535 VMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKI 614 (899)
Q Consensus 535 I~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 614 (899)
|++|+.... +.+.+.+|| .++.|.+++.+++.+++...+ +.++ +.+
T Consensus 154 Il~tt~~~k------------------------Ll~TIrSRc-~~v~F~~l~~~~l~~~L~~il-------~~EG--v~i 199 (824)
T PRK07764 154 IFATTEPDK------------------------VIGTIRSRT-HHYPFRLVPPEVMRGYLERIC-------AQEG--VPV 199 (824)
T ss_pred EEEeCChhh------------------------hhHHHHhhe-eEEEeeCCCHHHHHHHHHHHH-------HHcC--CCC
Confidence 888874322 344589999 899999999999998877666 3345 678
Q ss_pred cHHHHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 615 SKAALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 615 ~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
+++++.+++..+ -||+...+..|++++
T Consensus 200 d~eal~lLa~~s------gGdlR~Al~eLEKLi 226 (824)
T PRK07764 200 EPGVLPLVIRAG------GGSVRDSLSVLDQLL 226 (824)
T ss_pred CHHHHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 999999998833 355555555566666
No 138
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=4.6e-15 Score=163.74 Aligned_cols=201 Identities=16% Similarity=0.234 Sum_probs=129.9
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCC----ce-EEecccccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE----SI-IRIDMSEFIEKHS 462 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~----~~-~~~~~~~~~~~~~ 462 (899)
.+++||+++++.+.+++...+. .+.+||+||||||||++|+++|+.+..... ++ .+..|.++.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~--------~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRI--------HHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCC--------CeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 6788999999999998875331 225799999999999999999999943210 10 0001111111100
Q ss_pred hhhccCCCCCcccccccchhhHHHHhC----CCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEec
Q psy2887 463 ISRLIGAPPGYIGYEEGGYLTEIVRRK----PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTS 538 (899)
Q Consensus 463 ~~~l~g~~~~~~g~~~~~~l~~~~~~~----~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ts 538 (899)
..-+.-......+.+..+.+.+.+... ...|+||||+|+++...++.|++.+++ +..++.+|++|
T Consensus 88 ~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe-----------~~~~~~fIl~t 156 (363)
T PRK14961 88 LDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEE-----------PPQHIKFILAT 156 (363)
T ss_pred CceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhc-----------CCCCeEEEEEc
Confidence 000000000011112223333333322 356999999999999999999999997 34567788887
Q ss_pred CCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHH
Q psy2887 539 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAA 618 (899)
Q Consensus 539 n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~ 618 (899)
+... .+.+.+.+|+ ..+.|.|++.+++.+++...++. .+ ..+++++
T Consensus 157 ~~~~------------------------~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~-------~g--~~i~~~a 202 (363)
T PRK14961 157 TDVE------------------------KIPKTILSRC-LQFKLKIISEEKIFNFLKYILIK-------ES--IDTDEYA 202 (363)
T ss_pred CChH------------------------hhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHH-------cC--CCCCHHH
Confidence 6422 2456689999 89999999999999887766632 34 6789999
Q ss_pred HHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 619 LKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 619 ~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
+++++.. .-||+......++++.
T Consensus 203 l~~ia~~------s~G~~R~al~~l~~~~ 225 (363)
T PRK14961 203 LKLIAYH------AHGSMRDALNLLEHAI 225 (363)
T ss_pred HHHHHHH------cCCCHHHHHHHHHHHH
Confidence 9999883 2355555544455544
No 139
>KOG0989|consensus
Probab=99.62 E-value=3.4e-15 Score=150.18 Aligned_cols=175 Identities=21% Similarity=0.232 Sum_probs=131.7
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHH----h-cCC
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS----N-NQK 85 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~----~-~~~ 85 (899)
+--+|+|||||||||||+.|+++|+++.. +.+..+.+.+.+.+.-. |-....+-.+.+..+..... . ...
T Consensus 55 ~~lp~~LFyGPpGTGKTStalafar~L~~----~~~~~~rvl~lnaSder-Gisvvr~Kik~fakl~~~~~~~~~~~~~~ 129 (346)
T KOG0989|consen 55 RILPHYLFYGPPGTGKTSTALAFARALNC----EQLFPCRVLELNASDER-GISVVREKIKNFAKLTVLLKRSDGYPCPP 129 (346)
T ss_pred cCCceEEeeCCCCCcHhHHHHHHHHHhcC----ccccccchhhhcccccc-cccchhhhhcCHHHHhhccccccCCCCCc
Confidence 56679999999999999999999999844 33445556555443322 11111111111222211111 0 112
Q ss_pred CEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHHHHHHH
Q psy2887 86 DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISI 163 (899)
Q Consensus 86 ~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~i 163 (899)
.-|++|||+|.|.. ++..+|...|++ ..++||..||+.. .+.+.+.+|++.+.|+....+.....
T Consensus 130 fKiiIlDEcdsmts--------daq~aLrr~mE~~s~~trFiLIcnyls-----rii~pi~SRC~KfrFk~L~d~~iv~r 196 (346)
T KOG0989|consen 130 FKIIILDECDSMTS--------DAQAALRRTMEDFSRTTRFILICNYLS-----RIIRPLVSRCQKFRFKKLKDEDIVDR 196 (346)
T ss_pred ceEEEEechhhhhH--------HHHHHHHHHHhccccceEEEEEcCChh-----hCChHHHhhHHHhcCCCcchHHHHHH
Confidence 26999999999975 778899999975 5789999999999 89999999999999999999999999
Q ss_pred HHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHH
Q psy2887 164 LRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAA 213 (899)
Q Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~ 213 (899)
|+.+..+ .++.+++++++.+++.++|.+. +|+..++.+.-
T Consensus 197 L~~Ia~~----E~v~~d~~al~~I~~~S~GdLR------~Ait~Lqsls~ 236 (346)
T KOG0989|consen 197 LEKIASK----EGVDIDDDALKLIAKISDGDLR------RAITTLQSLSL 236 (346)
T ss_pred HHHHHHH----hCCCCCHHHHHHHHHHcCCcHH------HHHHHHHHhhc
Confidence 9998887 7899999999999999999887 77777777664
No 140
>KOG0742|consensus
Probab=99.62 E-value=1.3e-15 Score=157.35 Aligned_cols=150 Identities=20% Similarity=0.240 Sum_probs=112.9
Q ss_pred CCccCCCCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcC
Q psy2887 5 HTKENFYFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQ 84 (899)
Q Consensus 5 ~~~~~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~ 84 (899)
.|+.++-.-+|||||||||||||.+|+.||... +...-.+.-+++. ..-.+...++.++|+.+..+.
T Consensus 376 NTK~h~apfRNilfyGPPGTGKTm~ArelAr~S----------GlDYA~mTGGDVA---PlG~qaVTkiH~lFDWakkS~ 442 (630)
T KOG0742|consen 376 NTKKHQAPFRNILFYGPPGTGKTMFARELARHS----------GLDYAIMTGGDVA---PLGAQAVTKIHKLFDWAKKSR 442 (630)
T ss_pred ccccccchhhheeeeCCCCCCchHHHHHHHhhc----------CCceehhcCCCcc---ccchHHHHHHHHHHHHHhhcc
Confidence 455666666799999999999999999999876 4333222111110 111234557999999999888
Q ss_pred CCEEEEEccccccccCCCCCchh----hHHHhhhhhh--cCCceEEEEecChhHHHHhhhcCHHHHhcccc-ccccCCCH
Q psy2887 85 KDIIIFIDELHTMIGTGKVEGSI----DAGNMLKPEL--SRGELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDI 157 (899)
Q Consensus 85 ~~~iL~iDEi~~l~~~~~~~~~~----~~~~~l~~~l--~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~-i~l~~p~~ 157 (899)
.+.+|||||+|.++..+...... .+.|.|+-.- .+.+++++.+||.++ .+|.++-.|++. |+|+.|..
T Consensus 443 rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpg-----dlDsAV~DRide~veFpLPGe 517 (630)
T KOG0742|consen 443 RGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG-----DLDSAVNDRIDEVVEFPLPGE 517 (630)
T ss_pred cceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCcc-----chhHHHHhhhhheeecCCCCh
Confidence 89999999999998776554332 2333333222 467899999999999 999999999985 99999999
Q ss_pred HHHHHHHHhhhhhhh
Q psy2887 158 EETISILRGLQKKYE 172 (899)
Q Consensus 158 ~e~~~il~~~~~~~~ 172 (899)
+||..+|..++++|-
T Consensus 518 EERfkll~lYlnkyi 532 (630)
T KOG0742|consen 518 EERFKLLNLYLNKYI 532 (630)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998888765
No 141
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=4.5e-15 Score=168.24 Aligned_cols=200 Identities=19% Similarity=0.289 Sum_probs=134.1
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCC----CceE-Eecccccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNE----ESII-RIDMSEFIEKHS 462 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~----~~~~-~~~~~~~~~~~~ 462 (899)
.+++||+.+++.+..++...+. .+.+||+||+|||||++|+++|+.+.... .++- +..|..+....
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl--------~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~- 86 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKV--------HHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNS- 86 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCC-
Confidence 6788999999999999875431 22589999999999999999999985321 1110 00011110000
Q ss_pred hhhccC-CCCCcccccccchhhHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEe
Q psy2887 463 ISRLIG-APPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMT 537 (899)
Q Consensus 463 ~~~l~g-~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 537 (899)
...++. ......|.++.+.+.+.+.. +.+.|+||||+|+++...++.|++.||+ ....++||++
T Consensus 87 ~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEe-----------pp~~v~fIL~ 155 (546)
T PRK14957 87 FIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEE-----------PPEYVKFILA 155 (546)
T ss_pred CCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhc-----------CCCCceEEEE
Confidence 000100 00012333333444444432 3467999999999999999999999998 3466778877
Q ss_pred cCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHH
Q psy2887 538 SNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKA 617 (899)
Q Consensus 538 sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 617 (899)
|+... .+.+.+.+|| .++.|.+++.+++.+.+...+.+ ++ +.++++
T Consensus 156 Ttd~~------------------------kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~-------eg--i~~e~~ 201 (546)
T PRK14957 156 TTDYH------------------------KIPVTILSRC-IQLHLKHISQADIKDQLKIILAK-------EN--INSDEQ 201 (546)
T ss_pred ECChh------------------------hhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHH-------cC--CCCCHH
Confidence 76422 2344589999 89999999999999887766633 34 678999
Q ss_pred HHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 618 ALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 618 ~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
+++.++.. +-||+......|++++
T Consensus 202 Al~~Ia~~------s~GdlR~alnlLek~i 225 (546)
T PRK14957 202 SLEYIAYH------AKGSLRDALSLLDQAI 225 (546)
T ss_pred HHHHHHHH------cCCCHHHHHHHHHHHH
Confidence 99999983 3466666655566655
No 142
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=4.9e-15 Score=170.05 Aligned_cols=200 Identities=17% Similarity=0.255 Sum_probs=132.7
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCC---------ce-EEeccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE---------SI-IRIDMSEF 457 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~---------~~-~~~~~~~~ 457 (899)
.+++||+++++.|.+++...+. + ..+||+||+|||||++|+++|+.++..+. ++ .+-+|..+
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl-------~-ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i 87 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRL-------H-HAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDI 87 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-------C-eEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHH
Confidence 5678999999999999886542 1 25799999999999999999999953211 00 00011111
Q ss_pred ccccchhhccC-CCCCcccccccchhhHHHHhC----CCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCe
Q psy2887 458 IEKHSISRLIG-APPGYIGYEEGGYLTEIVRRK----PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNT 532 (899)
Q Consensus 458 ~~~~~~~~l~g-~~~~~~g~~~~~~l~~~~~~~----~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ 532 (899)
...... .++- ......|.++.+.+.+.+... .+.|+||||+|.++...+|.|++.||+ ....+
T Consensus 88 ~~g~h~-D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEE-----------PP~~~ 155 (618)
T PRK14951 88 DSGRFV-DYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEE-----------PPEYL 155 (618)
T ss_pred HcCCCC-ceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhccc-----------CCCCe
Confidence 110000 0000 000112222333344443333 367999999999999999999999998 45677
Q ss_pred EEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcce
Q psy2887 533 IIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDL 612 (899)
Q Consensus 533 ~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~ 612 (899)
+||++|+.... +.+.+++|| ..+.|.+++.+++.+.+...+ ..++ +
T Consensus 156 ~fIL~Ttd~~k------------------------il~TIlSRc-~~~~f~~Ls~eei~~~L~~i~-------~~eg--i 201 (618)
T PRK14951 156 KFVLATTDPQK------------------------VPVTVLSRC-LQFNLRPMAPETVLEHLTQVL-------AAEN--V 201 (618)
T ss_pred EEEEEECCchh------------------------hhHHHHHhc-eeeecCCCCHHHHHHHHHHHH-------HHcC--C
Confidence 88888874333 334589999 899999999999998877666 3345 6
Q ss_pred eecHHHHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 613 KISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 613 ~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
.++++++.+|++. +-||++..+..+.+++
T Consensus 202 ~ie~~AL~~La~~------s~GslR~al~lLdq~i 230 (618)
T PRK14951 202 PAEPQALRLLARA------ARGSMRDALSLTDQAI 230 (618)
T ss_pred CCCHHHHHHHHHH------cCCCHHHHHHHHHHHH
Confidence 7889999999882 2356655544444443
No 143
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.62 E-value=4.4e-14 Score=154.35 Aligned_cols=179 Identities=17% Similarity=0.304 Sum_probs=128.2
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhcc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 467 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (899)
.+++||++.++.+...+...+.. ..+..+++|+||||||||++|+++|+.+ +..+...+.+.+...
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~----~~~~~~~ll~GppG~GKT~la~~ia~~l---~~~~~~~~~~~~~~~------- 90 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKR----GEALDHVLLYGPPGLGKTTLANIIANEM---GVNIRITSGPALEKP------- 90 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhc----CCCCCcEEEECCCCccHHHHHHHHHHHh---CCCeEEEecccccCh-------
Confidence 56789999999998888765422 2333479999999999999999999999 666655544432211
Q ss_pred CCCCCcccccccchhhHHHHh-CCCEEEEEccccccCHHHHHHHHHhhcCCcee--cCCC---c--eEecCCeEEEEecC
Q psy2887 468 GAPPGYIGYEEGGYLTEIVRR-KPYSLILLDEIEKANSDVFNILLQILDDGRLT--DNRG---R--TINFRNTIIVMTSN 539 (899)
Q Consensus 468 g~~~~~~g~~~~~~l~~~~~~-~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~--~~~g---~--~~~~~~~~iI~tsn 539 (899)
..+...+.. ..++|||||||+.+++..++.|+..+++..+. ...+ . .......++|++||
T Consensus 91 ------------~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~ 158 (328)
T PRK00080 91 ------------GDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATT 158 (328)
T ss_pred ------------HHHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecC
Confidence 112222222 34679999999999999999999999875432 1111 1 11234567788877
Q ss_pred CChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHH
Q psy2887 540 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAAL 619 (899)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~ 619 (899)
... .+.++|.+||..++.|.+++.+++.+|+...... . .+.++++++
T Consensus 159 ~~~------------------------~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~-------~--~~~~~~~~~ 205 (328)
T PRK00080 159 RAG------------------------LLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARI-------L--GVEIDEEGA 205 (328)
T ss_pred Ccc------------------------cCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH-------c--CCCcCHHHH
Confidence 432 3567799999889999999999999998876633 2 377899999
Q ss_pred HHHHhc
Q psy2887 620 KKISNI 625 (899)
Q Consensus 620 ~~L~~~ 625 (899)
.++++.
T Consensus 206 ~~ia~~ 211 (328)
T PRK00080 206 LEIARR 211 (328)
T ss_pred HHHHHH
Confidence 999873
No 144
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=8.5e-15 Score=166.58 Aligned_cols=199 Identities=20% Similarity=0.303 Sum_probs=132.6
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCc--eEEecccc---cccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES--IIRIDMSE---FIEKHS 462 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~--~~~~~~~~---~~~~~~ 462 (899)
.+|+||+.+++.|.+++...+. ..++||+||+|||||++|+++|+.++..... .-+-.|.. +.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri--------~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRV--------APAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCC--------CceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCC
Confidence 5678999999999999875431 1369999999999999999999999532110 00011110 100000
Q ss_pred --hhhccCCCCCcccccccchhhHHHH----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEE
Q psy2887 463 --ISRLIGAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVM 536 (899)
Q Consensus 463 --~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ 536 (899)
+..+-+. ..+|.+..+.+.+.+. .....||||||+|.+....++.|++.||+ ...+++||+
T Consensus 88 pDv~eId~a--~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEE-----------P~~~~ifIL 154 (624)
T PRK14959 88 VDVVEIDGA--SNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEE-----------PPARVTFVL 154 (624)
T ss_pred CceEEEecc--cccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhc-----------cCCCEEEEE
Confidence 0011111 0122222334444443 23467999999999999999999999997 346788888
Q ss_pred ecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecH
Q psy2887 537 TSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISK 616 (899)
Q Consensus 537 tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 616 (899)
+||.... +.+.+.+|| .++.|.+++.+++.+++...+ ...+ +.+++
T Consensus 155 aTt~~~k------------------------ll~TI~SRc-q~i~F~pLs~~eL~~~L~~il-------~~eg--i~id~ 200 (624)
T PRK14959 155 ATTEPHK------------------------FPVTIVSRC-QHFTFTRLSEAGLEAHLTKVL-------GREG--VDYDP 200 (624)
T ss_pred ecCChhh------------------------hhHHHHhhh-hccccCCCCHHHHHHHHHHHH-------HHcC--CCCCH
Confidence 8885332 334588999 789999999999998877655 2334 67899
Q ss_pred HHHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 617 AALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 617 ~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
++++.+++. .-||+......|++++
T Consensus 201 eal~lIA~~------s~GdlR~Al~lLeqll 225 (624)
T PRK14959 201 AAVRLIARR------AAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHHHHHH------cCCCHHHHHHHHHHHH
Confidence 999999983 3466666655565544
No 145
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.61 E-value=2.1e-15 Score=166.99 Aligned_cols=218 Identities=17% Similarity=0.218 Sum_probs=168.1
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCC
Q psy2887 392 GQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPP 471 (899)
Q Consensus 392 gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 471 (899)
+.+..+..+.+.+.+... ...++++.|.|||||-.+|+++++..- ..++|+.+||..+.+....+.+||..+
T Consensus 317 ~~d~s~a~l~rk~~rv~~-------~~~pvll~GEtGtGKe~laraiH~~s~-~~gpfvAvNCaAip~~liesELFGy~~ 388 (606)
T COG3284 317 LLDPSRATLLRKAERVAA-------TDLPVLLQGETGTGKEVLARAIHQNSE-AAGPFVAVNCAAIPEALIESELFGYVA 388 (606)
T ss_pred ccCHHHHHHHHHHHHHhh-------cCCCeEecCCcchhHHHHHHHHHhccc-ccCCeEEEEeccchHHhhhHHHhccCc
Confidence 555555555555544331 112599999999999999999999986 788999999999999999999999876
Q ss_pred Cc-ccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhc
Q psy2887 472 GY-IGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEK 550 (899)
Q Consensus 472 ~~-~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~ 550 (899)
|. .|... +--...+..+..+.||+|||..++-..|..||++|++|.++.-+|.. ..-+..||.+|+.+...+.+
T Consensus 389 GafTga~~-kG~~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl~~lv~--- 463 (606)
T COG3284 389 GAFTGARR-KGYKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDLAQLVE--- 463 (606)
T ss_pred cccccchh-ccccccceecCCCccHHHHhhhchHHHHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCHHHHHH---
Confidence 63 22211 22334566778899999999999999999999999999999877776 44578899999998887777
Q ss_pred CcHHHHHHHHHHHHhhcCChhHhhccCe-EEEecCCCH-HHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccC
Q psy2887 551 GDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR-KNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFD 628 (899)
Q Consensus 551 ~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~~-~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 628 (899)
.+.|+.+|++|++. .|..||+.+ .|....+.+++.+. ....+.++++++..|.. |.
T Consensus 464 --------------~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~------~~~~~~l~~~~~~~l~~--~~ 521 (606)
T COG3284 464 --------------QGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKRE------NDWRLQLDDDALARLLA--YR 521 (606)
T ss_pred --------------cCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHc------cCCCccCCHHHHHHHHh--CC
Confidence 57899999999964 777888765 45555555555331 12558899999999987 99
Q ss_pred cccccccccccHHHHHHHH
Q psy2887 629 LIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 629 ~~~~~~di~~~~~~l~~~l 647 (899)
|+.+++.+... |+.+.
T Consensus 522 WPGNirel~~v---~~~~~ 537 (606)
T COG3284 522 WPGNIRELDNV---IERLA 537 (606)
T ss_pred CCCcHHHHHHH---HHHHH
Confidence 99998887776 55444
No 146
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.61 E-value=1.4e-14 Score=158.82 Aligned_cols=181 Identities=18% Similarity=0.207 Sum_probs=127.5
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccc
Q psy2887 376 REKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMS 455 (899)
Q Consensus 376 ~~~l~~l~~~l~~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~ 455 (899)
...+..+...+.+.++|++++++.+..++.... ++||.||||||||++|++||..+...+ +|..+.+.
T Consensus 8 ~~~i~~l~~~l~~~i~gre~vI~lll~aalag~-----------hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~~~~~ 75 (498)
T PRK13531 8 AERISRLSSALEKGLYERSHAIRLCLLAALSGE-----------SVFLLGPPGIAKSLIARRLKFAFQNAR-AFEYLMTR 75 (498)
T ss_pred HHHHHHHHHHHhhhccCcHHHHHHHHHHHccCC-----------CEEEECCCChhHHHHHHHHHHHhcccC-cceeeeee
Confidence 345678889999999999999999988886432 799999999999999999999874332 55544433
Q ss_pred ccccccchhhccCCCCCcccccccchhhHHHHhC---CCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCe
Q psy2887 456 EFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRK---PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNT 532 (899)
Q Consensus 456 ~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~---~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ 532 (899)
-.. ...++|....+.....+ .+. ..... ...+||+|||.++++.+|+.||++|+++.++. +|.+......
T Consensus 76 ftt----p~DLfG~l~i~~~~~~g-~f~-r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~-g~~~~~lp~r 148 (498)
T PRK13531 76 FST----PEEVFGPLSIQALKDEG-RYQ-RLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRN-GAHEEKIPMR 148 (498)
T ss_pred ecC----cHHhcCcHHHhhhhhcC-chh-hhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEec-CCeEEeCCCc
Confidence 111 13555543111100011 111 11111 12399999999999999999999999999886 5777777777
Q ss_pred EEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCC-HHHHHHHHHH
Q psy2887 533 IIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLN-RKNILSIANI 596 (899)
Q Consensus 533 ~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~-~~~~~~i~~~ 596 (899)
+++++||.-++ .+.|.+++++||-..+.++|++ +++..+++..
T Consensus 149 fiv~ATN~LPE---------------------~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~ 192 (498)
T PRK13531 149 LLVTASNELPE---------------------ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTS 192 (498)
T ss_pred EEEEECCCCcc---------------------cCCchHHhHhhEEEEEECCCCCchHHHHHHHHc
Confidence 77888874332 2457788999997788899997 4666777754
No 147
>KOG0729|consensus
Probab=99.61 E-value=1.7e-15 Score=148.02 Aligned_cols=161 Identities=25% Similarity=0.412 Sum_probs=125.8
Q ss_pred ccCCChHHHHHHHHHHHHH--------hhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRR--------SRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 459 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~--------~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 459 (899)
.++.|..+.++.+++.+.. ...|+.+|++ +|+|||||||||.+|+++|+.. +..|+++-+|++..
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkg----vllygppgtgktl~aravanrt---dacfirvigselvq 249 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKG----VLLYGPPGTGKTLCARAVANRT---DACFIRVIGSELVQ 249 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCc----eEEeCCCCCchhHHHHHHhccc---CceEEeehhHHHHH
Confidence 5677888888888887743 3456655554 9999999999999999999877 88999999999877
Q ss_pred ccchhhccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccC-----------HHHHHHHHHhhcCCceecCCCce
Q psy2887 460 KHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRT 526 (899)
Q Consensus 460 ~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~ 526 (899)
+ |+|+... +.+|+.++..+.|+|||||||.+. .++|..+|.++..---.|+.
T Consensus 250 k------------yvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdpr--- 314 (435)
T KOG0729|consen 250 K------------YVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR--- 314 (435)
T ss_pred H------------HhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC---
Confidence 6 7776665 789999999999999999998654 36888888877642222332
Q ss_pred EecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHh--hccCeEEEecCCCHHHHHHHHHHH
Q psy2887 527 INFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQ 597 (899)
Q Consensus 527 ~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~~~~~~i~~~~ 597 (899)
.|.-++|+||.+.. ++|.|+ +|+|..+.|.-++-+-...|++.+
T Consensus 315 ---gnikvlmatnrpdt------------------------ldpallrpgrldrkvef~lpdlegrt~i~kih 360 (435)
T KOG0729|consen 315 ---GNIKVLMATNRPDT------------------------LDPALLRPGRLDRKVEFGLPDLEGRTHIFKIH 360 (435)
T ss_pred ---CCeEEEeecCCCCC------------------------cCHhhcCCcccccceeccCCcccccceeEEEe
Confidence 46668999997653 667776 899999999999888777775433
No 148
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.61 E-value=7.1e-15 Score=169.35 Aligned_cols=160 Identities=24% Similarity=0.384 Sum_probs=117.3
Q ss_pred ccCCChHHHHHHHHHHHHHhh-------cCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSR-------SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEK 460 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~-------~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~ 460 (899)
.+++|++++++.+...+...+ .+.. .| .++||+||||||||++|+++|..+ +.+++.++++++...
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~---~~-~giLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAK---IP-KGVLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSDFVEM 127 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCC---CC-CcEEEECCCCCCHHHHHHHHHHHc---CCCeeeccHHHHHHH
Confidence 567788888888877665322 1221 12 269999999999999999999998 889999998877543
Q ss_pred cchhhccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccCH--------------HHHHHHHHhhcCCceecCCC
Q psy2887 461 HSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS--------------DVFNILLQILDDGRLTDNRG 524 (899)
Q Consensus 461 ~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~--------------~~~~~Ll~~le~g~~~~~~g 524 (899)
++|.... +.++..++...++||||||||.+.+ .+++.|+..|+.- .
T Consensus 128 ------------~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~--~---- 189 (495)
T TIGR01241 128 ------------FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF--G---- 189 (495)
T ss_pred ------------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccc--c----
Confidence 2332222 4567777777889999999997643 3556777777641 1
Q ss_pred ceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHh--hccCeEEEecCCCHHHHHHHHHHHHH
Q psy2887 525 RTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQLN 599 (899)
Q Consensus 525 ~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~~~~~~i~~~~l~ 599 (899)
...+++||+|||.+.. ++|.++ +|||..|.+++|+.++..+|++.++.
T Consensus 190 ---~~~~v~vI~aTn~~~~------------------------ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~ 239 (495)
T TIGR01241 190 ---TNTGVIVIAATNRPDV------------------------LDPALLRPGRFDRQVVVDLPDIKGREEILKVHAK 239 (495)
T ss_pred ---CCCCeEEEEecCChhh------------------------cCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHh
Confidence 1245788999986432 566676 49999999999999999999988773
No 149
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=8.1e-15 Score=169.11 Aligned_cols=183 Identities=23% Similarity=0.377 Sum_probs=127.5
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCce---EEecccccccccchh
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI---IRIDMSEFIEKHSIS 464 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~---~~~~~~~~~~~~~~~ 464 (899)
.+++||+.+++.|..++...+. .+.+||+||+|||||++|+++|+.+....... .+-.|....+.+ ..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl--------~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~-~D 88 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKI--------SHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNS-LD 88 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCC-Cc
Confidence 6788999999999999986431 23589999999999999999999995432111 011111111110 01
Q ss_pred hccCCCCCcccccccchhhHHHHhC----CCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCC
Q psy2887 465 RLIGAPPGYIGYEEGGYLTEIVRRK----PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNL 540 (899)
Q Consensus 465 ~l~g~~~~~~g~~~~~~l~~~~~~~----~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~ 540 (899)
.+.+...+..|.+..+.+.+.+... .+.|++|||++.+....++.|+..||+ +...+++|++|+.
T Consensus 89 vieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEE-----------PP~~tifILaTte 157 (725)
T PRK07133 89 IIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEE-----------PPKHVIFILATTE 157 (725)
T ss_pred EEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhc-----------CCCceEEEEEcCC
Confidence 1111111223334345565555543 457999999999999999999999998 4567788888864
Q ss_pred ChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHH
Q psy2887 541 GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALK 620 (899)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 620 (899)
.. .+.+.+.+|| ..+.|.|++.+++.+.+...+. ..+ +.++++++.
T Consensus 158 ~~------------------------KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~-------keg--I~id~eAl~ 203 (725)
T PRK07133 158 VH------------------------KIPLTILSRV-QRFNFRRISEDEIVSRLEFILE-------KEN--ISYEKNALK 203 (725)
T ss_pred hh------------------------hhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHH-------HcC--CCCCHHHHH
Confidence 22 3456689999 7999999999999998776653 344 677888998
Q ss_pred HHHh
Q psy2887 621 KISN 624 (899)
Q Consensus 621 ~L~~ 624 (899)
.++.
T Consensus 204 ~LA~ 207 (725)
T PRK07133 204 LIAK 207 (725)
T ss_pred HHHH
Confidence 8887
No 150
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=1.6e-14 Score=166.87 Aligned_cols=200 Identities=19% Similarity=0.308 Sum_probs=135.1
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCC----ceEEe-cccccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE----SIIRI-DMSEFIEKHS 462 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~----~~~~~-~~~~~~~~~~ 462 (899)
.+++||+++++.+.+++...+. .+.+||+||+|||||++|+.+|+.+..... ++-.. +|..+.....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~--------~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKI--------SHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSL 87 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCC
Confidence 6789999999999999986432 236899999999999999999999853221 11000 1111111000
Q ss_pred hh-hccCCCCCcccccccchhhHHHHhC----CCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEe
Q psy2887 463 IS-RLIGAPPGYIGYEEGGYLTEIVRRK----PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMT 537 (899)
Q Consensus 463 ~~-~l~g~~~~~~g~~~~~~l~~~~~~~----~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 537 (899)
.. ..+.. ....|.++.+.+.+.+... .+.|+||||+|.+....+|.|++.||+ +..+++||++
T Consensus 88 ~dv~eida-as~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEe-----------pp~~~ifIla 155 (559)
T PRK05563 88 MDVIEIDA-ASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEE-----------PPAHVIFILA 155 (559)
T ss_pred CCeEEeec-cccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcC-----------CCCCeEEEEE
Confidence 00 00000 0123333345555555433 467999999999999999999999997 4567888888
Q ss_pred cCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHH
Q psy2887 538 SNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKA 617 (899)
Q Consensus 538 sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 617 (899)
|+... .+.+.+.+|| ..+.|.+++.+++.+.+...+. ..+ +.++++
T Consensus 156 tt~~~------------------------ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~-------~eg--i~i~~~ 201 (559)
T PRK05563 156 TTEPH------------------------KIPATILSRC-QRFDFKRISVEDIVERLKYILD-------KEG--IEYEDE 201 (559)
T ss_pred eCChh------------------------hCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHH-------HcC--CCCCHH
Confidence 87432 3566789999 7899999999999988776663 345 678899
Q ss_pred HHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 618 ALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 618 ~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
++..++..+ -||+......|++++
T Consensus 202 al~~ia~~s------~G~~R~al~~Ldq~~ 225 (559)
T PRK05563 202 ALRLIARAA------EGGMRDALSILDQAI 225 (559)
T ss_pred HHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 999998732 355555544465554
No 151
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.60 E-value=2.6e-14 Score=155.30 Aligned_cols=179 Identities=16% Similarity=0.312 Sum_probs=126.7
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhcc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 467 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (899)
.+++||+++++.+...+...... ..+..+++|+||||||||++|+++|+.+ +.++..++.+.....
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~----~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~~~~~~~~~~~~------- 69 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMR----QEALDHLLLYGPPGLGKTTLAHIIANEM---GVNLKITSGPALEKP------- 69 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhc----CCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCEEEeccchhcCc-------
Confidence 56789999999999988654422 1222369999999999999999999998 555554443322111
Q ss_pred CCCCCcccccccchhhHHHHh-CCCEEEEEccccccCHHHHHHHHHhhcCCceec--CCC-----ceEecCCeEEEEecC
Q psy2887 468 GAPPGYIGYEEGGYLTEIVRR-KPYSLILLDEIEKANSDVFNILLQILDDGRLTD--NRG-----RTINFRNTIIVMTSN 539 (899)
Q Consensus 468 g~~~~~~g~~~~~~l~~~~~~-~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~--~~g-----~~~~~~~~~iI~tsn 539 (899)
..+...+.. ..+.||||||++.+++..++.|+.++++..... ..+ ........++|.+||
T Consensus 70 ------------~~l~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~ 137 (305)
T TIGR00635 70 ------------GDLAAILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATT 137 (305)
T ss_pred ------------hhHHHHHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecC
Confidence 112222222 245699999999999999999999998765321 111 122344567777777
Q ss_pred CChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHH
Q psy2887 540 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAAL 619 (899)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~ 619 (899)
... .+.+.+.+||..++.|.+++.+++.+++...+.. . .+.++++++
T Consensus 138 ~~~------------------------~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~-------~--~~~~~~~al 184 (305)
T TIGR00635 138 RAG------------------------MLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGL-------L--NVEIEPEAA 184 (305)
T ss_pred Ccc------------------------ccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHH-------h--CCCcCHHHH
Confidence 542 2567799999888999999999999998766532 2 367899999
Q ss_pred HHHHhc
Q psy2887 620 KKISNI 625 (899)
Q Consensus 620 ~~L~~~ 625 (899)
+++++.
T Consensus 185 ~~ia~~ 190 (305)
T TIGR00635 185 LEIARR 190 (305)
T ss_pred HHHHHH
Confidence 999883
No 152
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=4.7e-15 Score=169.13 Aligned_cols=200 Identities=16% Similarity=0.230 Sum_probs=131.8
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccc------ccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE------FIEKH 461 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~------~~~~~ 461 (899)
.+++||+++++.|..++...+ ....+||+||+|||||++|+++|+.++.... .....|.. +....
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r--------l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~-~~~~pCg~C~sCr~i~~g~ 86 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR--------LHHAYLLTGTRGVGKTTIARILAKSLNCENA-QHGEPCGVCQSCTQIDAGR 86 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCcHHHHHHHHHHHhcccCC-CCCCCCcccHHHHHHhccC
Confidence 678899999999999988533 2236899999999999999999999854321 00001111 10000
Q ss_pred chhhccCCCCCcccccccchhhHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEe
Q psy2887 462 SISRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMT 537 (899)
Q Consensus 462 ~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 537 (899)
....+.-......|.+..+.+...+.. ..+.|+||||+++++...++.|++.||+ ...+++||++
T Consensus 87 ~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEE-----------Pp~~v~fILa 155 (709)
T PRK08691 87 YVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEE-----------PPEHVKFILA 155 (709)
T ss_pred ccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHh-----------CCCCcEEEEE
Confidence 000000000011222222333333222 3457999999999999999999999997 3467788888
Q ss_pred cCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHH
Q psy2887 538 SNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKA 617 (899)
Q Consensus 538 sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 617 (899)
|+.... +.+.+++|| ..+.|.+++.+++.+.+...+ ..++ +.++++
T Consensus 156 Ttd~~k------------------------L~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il-------~kEg--i~id~e 201 (709)
T PRK08691 156 TTDPHK------------------------VPVTVLSRC-LQFVLRNMTAQQVADHLAHVL-------DSEK--IAYEPP 201 (709)
T ss_pred eCCccc------------------------cchHHHHHH-hhhhcCCCCHHHHHHHHHHHH-------HHcC--CCcCHH
Confidence 875332 445588999 899999999999999877666 3345 678999
Q ss_pred HHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 618 ALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 618 ~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
++..|++.+ -||++.....|++++
T Consensus 202 AL~~Ia~~A------~GslRdAlnLLDqai 225 (709)
T PRK08691 202 ALQLLGRAA------AGSMRDALSLLDQAI 225 (709)
T ss_pred HHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 999998833 355555544465555
No 153
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=1.2e-14 Score=163.70 Aligned_cols=201 Identities=17% Similarity=0.277 Sum_probs=134.0
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCc----e-EEecccccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES----I-IRIDMSEFIEKHS 462 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~----~-~~~~~~~~~~~~~ 462 (899)
.+++||+.+++.+...+...+. .+.+||+||+|+|||++|+++|+.++..... + .+-+|..+.....
T Consensus 14 deiiGqe~v~~~L~~~I~~grl--------~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h 85 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRL--------AHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRH 85 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCC--------CeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCC
Confidence 6789999999999999875431 1257999999999999999999999542211 1 0011111111100
Q ss_pred hhhccCCCCCcccccccchhhHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEec
Q psy2887 463 ISRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTS 538 (899)
Q Consensus 463 ~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ts 538 (899)
...+.+......|.+..+.+...... +++.|++|||++.+....+|.|++.||+ +...++||++|
T Consensus 86 ~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEE-----------pp~~t~FIL~t 154 (535)
T PRK08451 86 IDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEE-----------PPSYVKFILAT 154 (535)
T ss_pred CeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhh-----------cCCceEEEEEE
Confidence 01111111111222222222222221 3457999999999999999999999998 45678888888
Q ss_pred CCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHH
Q psy2887 539 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAA 618 (899)
Q Consensus 539 n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~ 618 (899)
+... .+.+.+.+|+ .++.|.|++.+++.+.+...+ ..+| +.+++++
T Consensus 155 td~~------------------------kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il-------~~EG--i~i~~~A 200 (535)
T PRK08451 155 TDPL------------------------KLPATILSRT-QHFRFKQIPQNSIISHLKTIL-------EKEG--VSYEPEA 200 (535)
T ss_pred CChh------------------------hCchHHHhhc-eeEEcCCCCHHHHHHHHHHHH-------HHcC--CCCCHHH
Confidence 7432 3556799998 899999999999988876665 3345 6788999
Q ss_pred HHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 619 LKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 619 ~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
+..++.. +-||++.....|++++
T Consensus 201 l~~Ia~~------s~GdlR~alnlLdqai 223 (535)
T PRK08451 201 LEILARS------GNGSLRDTLTLLDQAI 223 (535)
T ss_pred HHHHHHH------cCCcHHHHHHHHHHHH
Confidence 9999983 3466666666666655
No 154
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=1.1e-14 Score=164.28 Aligned_cols=200 Identities=19% Similarity=0.236 Sum_probs=132.8
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCC----c-----eEEecccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE----S-----IIRIDMSEFI 458 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~----~-----~~~~~~~~~~ 458 (899)
.+++||+.++..+..++...+. .+++||+||||||||++|+++|+.+..... + ..+-+|..+.
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri--------~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~ 92 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRL--------AGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFN 92 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--------CceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHh
Confidence 5788999999999998875431 237999999999999999999999943210 0 0111111111
Q ss_pred cccchh-hccCCCCCcccccccchhhHHHHhC----CCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeE
Q psy2887 459 EKHSIS-RLIGAPPGYIGYEEGGYLTEIVRRK----PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTI 533 (899)
Q Consensus 459 ~~~~~~-~l~g~~~~~~g~~~~~~l~~~~~~~----~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~ 533 (899)
+..... ..+... ...|.++.+.+.+.+... .+.|+||||++.++...++.|++.|++ +...++
T Consensus 93 ~~~h~Dv~eidaa-s~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEe-----------pp~~~v 160 (507)
T PRK06645 93 NHNHPDIIEIDAA-SKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEE-----------PPPHII 160 (507)
T ss_pred cCCCCcEEEeecc-CCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhh-----------cCCCEE
Confidence 110000 000110 122333334444444333 467999999999999999999999997 346778
Q ss_pred EEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCccee
Q psy2887 534 IVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLK 613 (899)
Q Consensus 534 iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 613 (899)
||++|+... .+.+.+.+|| ..+.|.+++.+++.+++...++ .++ +.
T Consensus 161 fI~aTte~~------------------------kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~-------~eg--i~ 206 (507)
T PRK06645 161 FIFATTEVQ------------------------KIPATIISRC-QRYDLRRLSFEEIFKLLEYITK-------QEN--LK 206 (507)
T ss_pred EEEEeCChH------------------------HhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHH-------HcC--CC
Confidence 888876322 2455688999 8999999999999999887774 344 67
Q ss_pred ecHHHHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 614 ISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 614 ~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
++++++.+++..+ -||+......|+++.
T Consensus 207 ie~eAL~~Ia~~s------~GslR~al~~Ldkai 234 (507)
T PRK06645 207 TDIEALRIIAYKS------EGSARDAVSILDQAA 234 (507)
T ss_pred CCHHHHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 8899999988732 245544444455554
No 155
>KOG2028|consensus
Probab=99.60 E-value=6.2e-15 Score=150.33 Aligned_cols=192 Identities=16% Similarity=0.298 Sum_probs=131.0
Q ss_pred ccCCChHHHHH---HHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchh
Q psy2887 388 KRVVGQDEAIS---AVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 464 (899)
Q Consensus 388 ~~v~gq~~~~~---~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 464 (899)
.+++||++++. .|+..+.+.+ .++++||||||||||+||+.|+.........|+.+....-...
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ieq~~---------ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~---- 204 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIEQNR---------IPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTN---- 204 (554)
T ss_pred HHhcchhhhcCcchHHHHHHHcCC---------CCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchH----
Confidence 44567777773 3444444433 2369999999999999999999988444444555443221111
Q ss_pred hccCCCCCcccccccchhhHHHH-----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecC
Q psy2887 465 RLIGAPPGYIGYEEGGYLTEIVR-----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSN 539 (899)
Q Consensus 465 ~l~g~~~~~~g~~~~~~l~~~~~-----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn 539 (899)
+-+.+++..+ -....|||||||+++....|+.||..+|.|.+ ++|-+|+
T Consensus 205 -------------dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I-------------~lIGATT 258 (554)
T KOG2028|consen 205 -------------DVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDI-------------TLIGATT 258 (554)
T ss_pred -------------HHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccceeccCce-------------EEEeccc
Confidence 1122222221 12345999999999999999999999998653 3565555
Q ss_pred CChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHh----cCcceeec
Q psy2887 540 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLK----MNMDLKIS 615 (899)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~----~~~~~~~~ 615 (899)
-.+. =+++..|++|| .++...+++.+++..|+.+.+.-+.+.-+. .+..+.++
T Consensus 259 ENPS----------------------Fqln~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve 315 (554)
T KOG2028|consen 259 ENPS----------------------FQLNAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVE 315 (554)
T ss_pred CCCc----------------------cchhHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhh
Confidence 4332 13566799999 899999999999999999888755432211 11234688
Q ss_pred HHHHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 616 KAALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 616 ~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
+.++++++. ...||-+..+.+|+-.+
T Consensus 316 ~siidyla~------lsdGDaR~aLN~Lems~ 341 (554)
T KOG2028|consen 316 DSIIDYLAY------LSDGDARAALNALEMSL 341 (554)
T ss_pred HHHHHHHHH------hcCchHHHHHHHHHHHH
Confidence 999999987 45788888888887664
No 156
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.60 E-value=1.7e-14 Score=162.30 Aligned_cols=183 Identities=17% Similarity=0.327 Sum_probs=129.5
Q ss_pred ccCCChHHHHHH---HHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchh
Q psy2887 388 KRVVGQDEAISA---VSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 464 (899)
Q Consensus 388 ~~v~gq~~~~~~---l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 464 (899)
.+++||++++.. +...+.... ..+++|+||||||||++|+++|+.+ +..++.+++.....
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~---------~~~ilL~GppGtGKTtLA~~ia~~~---~~~~~~l~a~~~~~----- 74 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGR---------LSSMILWGPPGTGKTTLARIIAGAT---DAPFEALSAVTSGV----- 74 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCC---------CceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEecccccH-----
Confidence 568899999766 777775322 1269999999999999999999988 77888777643211
Q ss_pred hccCCCCCcccccccchhhHHH----HhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCC
Q psy2887 465 RLIGAPPGYIGYEEGGYLTEIV----RRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNL 540 (899)
Q Consensus 465 ~l~g~~~~~~g~~~~~~l~~~~----~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~ 540 (899)
...+.+.+.+ ......||||||++++....++.|+..++++ ..++|.+|+.
T Consensus 75 ------------~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~-------------~iilI~att~ 129 (413)
T PRK13342 75 ------------KDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDG-------------TITLIGATTE 129 (413)
T ss_pred ------------HHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcC-------------cEEEEEeCCC
Confidence 1111122222 1235679999999999999999999999874 2345555543
Q ss_pred ChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHH
Q psy2887 541 GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALK 620 (899)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 620 (899)
.+. ..+.+.+++|| .++.|.|++.+++..++...+.... .++ +.+++++++
T Consensus 130 n~~----------------------~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~-----~~~-i~i~~~al~ 180 (413)
T PRK13342 130 NPS----------------------FEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKE-----RGL-VELDDEALD 180 (413)
T ss_pred Chh----------------------hhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhh-----cCC-CCCCHHHHH
Confidence 221 13567899999 8999999999999999888775431 132 478999999
Q ss_pred HHHhcccCcccccccccccHHHHHHHH
Q psy2887 621 KISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 621 ~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
.+++. .-||+......++.+.
T Consensus 181 ~l~~~------s~Gd~R~aln~Le~~~ 201 (413)
T PRK13342 181 ALARL------ANGDARRALNLLELAA 201 (413)
T ss_pred HHHHh------CCCCHHHHHHHHHHHH
Confidence 99882 2466666555555544
No 157
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=99.60 E-value=5.7e-15 Score=156.17 Aligned_cols=123 Identities=24% Similarity=0.393 Sum_probs=96.6
Q ss_pred cccccccccccHHHHHHHHHHhhccCCccceeeccccCCCCceEehhHHHHHhcC----CccEEEccCChHhHHhHhhhc
Q psy2887 629 LIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMR----NYAKIVLGNHEIHLLDVLINI 704 (899)
Q Consensus 629 ~~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~~~~l~~~~----~~~~~v~GNHe~~~l~~~~~~ 704 (899)
+.+.+|||||++..|.++++..++.++.+.++|+|||||||+.|++|+.++++++ ++++++|||||.+.+....+.
T Consensus 52 ~~~vvGDiHG~~~dL~~il~~~g~~~~~~~~lFLGDyVDRG~~s~Evl~ll~~lk~~~p~~v~llRGNHE~~~~~~~yGf 131 (321)
T cd07420 52 QVTICGDLHGKLDDLFLIFYKNGLPSPENPYVFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDHIMNLRYGF 131 (321)
T ss_pred CeEEEEeCCCCHHHHHHHHHHcCCCCccceEEEeccccCCCCCcHHHHHHHHHHhhcCCCcEEEecCchhhhhhhhhcCh
Confidence 5688999999999999999998876666789999999999999999999998873 578999999999998755443
Q ss_pred ccCchhchHHHhhC--CcChHHHHHHHhcCCceEEeC-CEEEEecccccccchH
Q psy2887 705 NKKSKLDTFDDILD--APDKKKLVSWLRTQPLAIYYK-KYLMIHAGVAKQWTAQ 755 (899)
Q Consensus 705 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~lp~~~~~~-~~~~vHAg~~~~~~~~ 755 (899)
.. +....+.. ......+.+++..||++..++ ++++||||++|.++..
T Consensus 132 ~~----e~~~~y~~~~~~l~~~~~~~F~~LPlaaii~~~i~cvHGGi~~~~~l~ 181 (321)
T cd07420 132 TK----EVMSKYKLHGKKILRLLEDVFSWLPLATIIDNKILVVHGGISDSTDLD 181 (321)
T ss_pred HH----HHHHHhCccHHHHHHHHHHHHHhCCceEEEcCCEEEEeCCCCCccCHH
Confidence 21 11111111 112466889999999998865 5999999999865544
No 158
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=1.3e-14 Score=164.67 Aligned_cols=200 Identities=22% Similarity=0.279 Sum_probs=134.9
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCC-ceEEeccc---ccccc-cc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE-SIIRIDMS---EFIEK-HS 462 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~-~~~~~~~~---~~~~~-~~ 462 (899)
.+|+||+++++.|..++...+. .+.+||+||||||||++|+++|+.+...+. ...+..|. .+... +.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l--------~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~ 85 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRL--------GHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHP 85 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCC
Confidence 5688999999999999886432 124699999999999999999999953221 10111111 11100 00
Q ss_pred hhhccCCCCCcccccccchhhHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEec
Q psy2887 463 ISRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTS 538 (899)
Q Consensus 463 ~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ts 538 (899)
.-..++.. +..+.+..+.+.+.+.. ..+.|+||||++.+....++.|+..|++ +..++++|+++
T Consensus 86 dv~el~~~-~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEe-----------p~~~t~~Il~t 153 (504)
T PRK14963 86 DVLEIDAA-SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEE-----------PPEHVIFILAT 153 (504)
T ss_pred ceEEeccc-ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHh-----------CCCCEEEEEEc
Confidence 00001111 12222222344444433 3457999999999999999999999997 34567888888
Q ss_pred CCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHH
Q psy2887 539 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAA 618 (899)
Q Consensus 539 n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~ 618 (899)
+... .+.+.+.+|+ ..+.|.+++.+++.+.+...+. ..+ +.+++++
T Consensus 154 ~~~~------------------------kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~-------~eg--i~i~~~A 199 (504)
T PRK14963 154 TEPE------------------------KMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLE-------AEG--REAEPEA 199 (504)
T ss_pred CChh------------------------hCChHHhcce-EEEEecCCCHHHHHHHHHHHHH-------HcC--CCCCHHH
Confidence 7432 3566688999 7999999999999999877763 345 6679999
Q ss_pred HHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 619 LKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 619 ~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
++++++ .+-||+......|++++
T Consensus 200 l~~ia~------~s~GdlR~aln~Lekl~ 222 (504)
T PRK14963 200 LQLVAR------LADGAMRDAESLLERLL 222 (504)
T ss_pred HHHHHH------HcCCCHHHHHHHHHHHH
Confidence 999988 33467777666677665
No 159
>CHL00176 ftsH cell division protein; Validated
Probab=99.60 E-value=1.2e-14 Score=168.79 Aligned_cols=194 Identities=21% Similarity=0.321 Sum_probs=128.7
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCC----CCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccch
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLS----DAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSI 463 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~----~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~ 463 (899)
.+++|.+++++.+...+...+.... ....| .++||+||||||||++|+++|..+ +.+++.++++++...
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p-~gVLL~GPpGTGKT~LAralA~e~---~~p~i~is~s~f~~~--- 255 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIP-KGVLLVGPPGTGKTLLAKAIAGEA---EVPFFSISGSEFVEM--- 255 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCC-ceEEEECCCCCCHHHHHHHHHHHh---CCCeeeccHHHHHHH---
Confidence 5677888888877776644321100 01122 269999999999999999999998 899999999887543
Q ss_pred hhccCCCCCcccccccchhhHHHHhCCCEEEEEccccccCH--------------HHHHHHHHhhcCCceecCCCceEec
Q psy2887 464 SRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANS--------------DVFNILLQILDDGRLTDNRGRTINF 529 (899)
Q Consensus 464 ~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~--------------~~~~~Ll~~le~g~~~~~~g~~~~~ 529 (899)
+.|. +....+.++..++...++||||||+|.+.. .+++.|+..+++-. ..
T Consensus 256 --~~g~-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~---------~~ 319 (638)
T CHL00176 256 --FVGV-----GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK---------GN 319 (638)
T ss_pred --hhhh-----hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc---------CC
Confidence 1111 111224566777777889999999998742 24556666665310 12
Q ss_pred CCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHh--hccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHh
Q psy2887 530 RNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQLNILKNKLLK 607 (899)
Q Consensus 530 ~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~ 607 (899)
.++++|++||.... ++|.++ +|||..+.|.+|+.+++.+|++.++..
T Consensus 320 ~~ViVIaaTN~~~~------------------------LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~------- 368 (638)
T CHL00176 320 KGVIVIAATNRVDI------------------------LDAALLRPGRFDRQITVSLPDREGRLDILKVHARN------- 368 (638)
T ss_pred CCeeEEEecCchHh------------------------hhhhhhccccCceEEEECCCCHHHHHHHHHHHHhh-------
Confidence 46788889885322 345565 599999999999999999999888754
Q ss_pred cCcceeecHHHHHHHHhcccCcccccccccccH
Q psy2887 608 MNMDLKISKAALKKISNIGFDLIYGARDVHGCK 640 (899)
Q Consensus 608 ~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~ 640 (899)
. ...++..+..++. ....|..+||....
T Consensus 369 ~---~~~~d~~l~~lA~--~t~G~sgaDL~~lv 396 (638)
T CHL00176 369 K---KLSPDVSLELIAR--RTPGFSGADLANLL 396 (638)
T ss_pred c---ccchhHHHHHHHh--cCCCCCHHHHHHHH
Confidence 1 1122334555554 23345667777663
No 160
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=7.7e-14 Score=157.62 Aligned_cols=173 Identities=20% Similarity=0.200 Sum_probs=129.9
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCc--------------cCCCeEEEEehhhhhcCcccCchHHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNS--------------LLSKKILLLDIALLLAGTKYRGEFEDRLKKI 76 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~--------------l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~ 76 (899)
+....+||+||+||||||+|+++|+.+.....+.. -....++.++.+. ..+ ...++++
T Consensus 35 rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs------~~~--VddIRel 106 (702)
T PRK14960 35 RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAAS------RTK--VEDTREL 106 (702)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccc------cCC--HHHHHHH
Confidence 44456699999999999999999999853211000 0112344444321 111 2346666
Q ss_pred HHHHHh---cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhcccccc
Q psy2887 77 LKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKIL 151 (899)
Q Consensus 77 ~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~ 151 (899)
+..+.. .++..|+||||+|.|.. .+.+.|+..++. +.+.+|++|+... .+.+.+++||..+.
T Consensus 107 i~~~~y~P~~gk~KV~IIDEVh~LS~--------~A~NALLKtLEEPP~~v~FILaTtd~~-----kIp~TIlSRCq~fe 173 (702)
T PRK14960 107 LDNVPYAPTQGRFKVYLIDEVHMLST--------HSFNALLKTLEEPPEHVKFLFATTDPQ-----KLPITVISRCLQFT 173 (702)
T ss_pred HHHHhhhhhcCCcEEEEEechHhcCH--------HHHHHHHHHHhcCCCCcEEEEEECChH-----hhhHHHHHhhheee
Confidence 665532 23456999999999964 567889999986 6688898888777 67789999999999
Q ss_pred ccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 152 VEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 152 l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
|..++.++..++++.++++ .++.++++++..+++.+++.++ +++++++.+++.
T Consensus 174 FkpLs~eEI~k~L~~Il~k----EgI~id~eAL~~IA~~S~GdLR------dALnLLDQaIay 226 (702)
T PRK14960 174 LRPLAVDEITKHLGAILEK----EQIAADQDAIWQIAESAQGSLR------DALSLTDQAIAY 226 (702)
T ss_pred ccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHH------HHHHHHHHHHHh
Confidence 9999999999999988876 6788999999999999988766 889999888764
No 161
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=3.7e-14 Score=159.66 Aligned_cols=173 Identities=20% Similarity=0.214 Sum_probs=129.4
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCC--CCc-----c------------CCCeEEEEehhhhhcCcccCchHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEV--PNS-----L------------LSKKILLLDIALLLAGTKYRGEFED 71 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~--p~~-----l------------~~~~~~~~~~~~l~~~~~~~g~~~~ 71 (899)
+....+||+||+|+||||+|+.+|+.+..... ... . ....+++++... ..| ..
T Consensus 36 RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas------~~g--VD 107 (700)
T PRK12323 36 RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAAS------NRG--VD 107 (700)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccc------cCC--HH
Confidence 33344699999999999999999999854210 000 0 011344444321 111 23
Q ss_pred HHHHHHHHHHh---cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhc
Q psy2887 72 RLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERR 146 (899)
Q Consensus 72 ~l~~~~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~R 146 (899)
.++++++.+.. .++..|+||||+|.|.. ...|.|+..||. ++++||++||... .+.+.++||
T Consensus 108 dIReLie~~~~~P~~gr~KViIIDEah~Ls~--------~AaNALLKTLEEPP~~v~FILaTtep~-----kLlpTIrSR 174 (700)
T PRK12323 108 EMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN--------HAFNAMLKTLEEPPEHVKFILATTDPQ-----KIPVTVLSR 174 (700)
T ss_pred HHHHHHHHHHhchhcCCceEEEEEChHhcCH--------HHHHHHHHhhccCCCCceEEEEeCChH-----hhhhHHHHH
Confidence 46666665542 23457999999999964 677899999986 6789999999888 888999999
Q ss_pred cccccccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 147 FQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 147 f~~i~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
|..+.|..++.++..++|+.++.. .++.++++++..+++.++|.+. +++++++++...
T Consensus 175 Cq~f~f~~ls~eei~~~L~~Il~~----Egi~~d~eAL~~IA~~A~Gs~R------dALsLLdQaia~ 232 (700)
T PRK12323 175 CLQFNLKQMPPGHIVSHLDAILGE----EGIAHEVNALRLLAQAAQGSMR------DALSLTDQAIAY 232 (700)
T ss_pred HHhcccCCCChHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHH------HHHHHHHHHHHh
Confidence 999999999999999999988865 5788999999999999988665 889999887653
No 162
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=2.9e-14 Score=162.46 Aligned_cols=173 Identities=20% Similarity=0.196 Sum_probs=130.3
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCc--------------cCCCeEEEEehhhhhcCcccCchHHHHHHHHH
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNS--------------LLSKKILLLDIALLLAGTKYRGEFEDRLKKIL 77 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~--------------l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~ 77 (899)
....+||+||+||||||+++++|+.+........ -....+++++... ..| ...+++++
T Consensus 37 L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas------~rg--VDdIReLI 108 (830)
T PRK07003 37 LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAAS------NRG--VDEMAALL 108 (830)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccc------ccc--HHHHHHHH
Confidence 3344699999999999999999999853211000 0011344444321 112 23466666
Q ss_pred HHHHh---cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhccccccc
Q psy2887 78 KEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILV 152 (899)
Q Consensus 78 ~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l 152 (899)
+.+.. .....|+||||+|.|.. ...|.|+..||. ..++||++||... .+.+.+++||..+.|
T Consensus 109 e~a~~~P~~gr~KVIIIDEah~LT~--------~A~NALLKtLEEPP~~v~FILaTtd~~-----KIp~TIrSRCq~f~F 175 (830)
T PRK07003 109 ERAVYAPVDARFKVYMIDEVHMLTN--------HAFNAMLKTLEEPPPHVKFILATTDPQ-----KIPVTVLSRCLQFNL 175 (830)
T ss_pred HHHHhccccCCceEEEEeChhhCCH--------HHHHHHHHHHHhcCCCeEEEEEECChh-----hccchhhhheEEEec
Confidence 66542 13356999999999954 567889989976 4789999999888 788999999999999
Q ss_pred cCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhh
Q psy2887 153 EEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 215 (899)
Q Consensus 153 ~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~ 215 (899)
..++.++..++|+.+++. .++.++++++..+++.+.+.+. +++++++++....
T Consensus 176 k~Ls~eeIv~~L~~Il~~----EgI~id~eAL~lIA~~A~GsmR------dALsLLdQAia~~ 228 (830)
T PRK07003 176 KQMPAGHIVSHLERILGE----ERIAFEPQALRLLARAAQGSMR------DALSLTDQAIAYS 228 (830)
T ss_pred CCcCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHH------HHHHHHHHHHHhc
Confidence 999999999999988876 6788999999999999998776 8999998887653
No 163
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=1.1e-14 Score=169.00 Aligned_cols=200 Identities=22% Similarity=0.339 Sum_probs=136.9
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCC----ce-EEecccccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE----SI-IRIDMSEFIEKHS 462 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~----~~-~~~~~~~~~~~~~ 462 (899)
.+++||+++++.|.+++...+ ..+.+||+||+|||||++|+++|+.++.... ++ .+-.|.++.....
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~--------~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR--------VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRS 87 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCC
Confidence 678999999999999987543 1235899999999999999999999953221 11 0011111111111
Q ss_pred hh--hccCCCCCcccccccchhhHHHHhC----CCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEE
Q psy2887 463 IS--RLIGAPPGYIGYEEGGYLTEIVRRK----PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVM 536 (899)
Q Consensus 463 ~~--~l~g~~~~~~g~~~~~~l~~~~~~~----~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ 536 (899)
.. .+-|. +.+|.++.+.+.+.+... .+.|+||||+|.++...+|.|++.||+ +..+++||+
T Consensus 88 ~d~~eid~~--s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEe-----------pp~~~~fIl 154 (576)
T PRK14965 88 VDVFEIDGA--SNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEE-----------PPPHVKFIF 154 (576)
T ss_pred CCeeeeecc--CccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHc-----------CCCCeEEEE
Confidence 11 11111 123333445555555433 357999999999999999999999998 457888898
Q ss_pred ecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecH
Q psy2887 537 TSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISK 616 (899)
Q Consensus 537 tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 616 (899)
+||... .+.+.+.+|| ..+.|.+++.+++...+...+. ..+ +.+++
T Consensus 155 ~t~~~~------------------------kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~-------~eg--i~i~~ 200 (576)
T PRK14965 155 ATTEPH------------------------KVPITILSRC-QRFDFRRIPLQKIVDRLRYIAD-------QEG--ISISD 200 (576)
T ss_pred EeCChh------------------------hhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHH-------HhC--CCCCH
Confidence 887432 2455689999 8999999999999888766663 345 67899
Q ss_pred HHHHHHHhcccCcccccccccccHHHHHHHHH
Q psy2887 617 AALKKISNIGFDLIYGARDVHGCKKSLSILLK 648 (899)
Q Consensus 617 ~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l~ 648 (899)
+++..++..+ -||+......|++++.
T Consensus 201 ~al~~la~~a------~G~lr~al~~Ldqlia 226 (576)
T PRK14965 201 AALALVARKG------DGSMRDSLSTLDQVLA 226 (576)
T ss_pred HHHHHHHHHc------CCCHHHHHHHHHHHHH
Confidence 9999998833 3555555555666653
No 164
>KOG0652|consensus
Probab=99.58 E-value=8.7e-15 Score=142.61 Aligned_cols=162 Identities=20% Similarity=0.361 Sum_probs=119.0
Q ss_pred ccCCChHHHHHHHHHHHHH--------hhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRR--------SRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 459 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~--------~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 459 (899)
.+|.|.+..++.+.+++.. ...|+.+|+ .+|+|||||||||.+|++.|... ...|..+-++.+..
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPK----GvLmYGPPGTGKTlmARAcAaqT---~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPK----GVLMYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQ 243 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCC----ceEeeCCCCCcHHHHHHHHHHhc---cchHHHhcchHHHh
Confidence 5788999999999988832 234555554 49999999999999999999887 66777766666654
Q ss_pred ccchhhccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccC-----------HHHHHHHHHhhcCCceecCCCce
Q psy2887 460 KHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRT 526 (899)
Q Consensus 460 ~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~ 526 (899)
. |+|.... +..|..++...++||||||+|.+. .++|...|.++..- +|..
T Consensus 244 M------------fIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQL-----DGFs 306 (424)
T KOG0652|consen 244 M------------FIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQL-----DGFS 306 (424)
T ss_pred h------------hhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhh-----cCCC
Confidence 4 4444333 556777888889999999998654 35777777666531 1111
Q ss_pred EecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHh--hccCeEEEecCCCHHHHHHHHHHHH
Q psy2887 527 INFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQL 598 (899)
Q Consensus 527 ~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~~~~~~i~~~~l 598 (899)
+..++-+|++||.- ..+.|.|+ +|+|..|.|+-++++....|++.+-
T Consensus 307 -s~~~vKviAATNRv------------------------DiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHs 355 (424)
T KOG0652|consen 307 -SDDRVKVIAATNRV------------------------DILDPALLRSGRLDRKIEFPHPNEEARARILQIHS 355 (424)
T ss_pred -CccceEEEeecccc------------------------cccCHHHhhcccccccccCCCCChHHHHHHHHHhh
Confidence 22456689999952 23677776 8999999999999999988876554
No 165
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.58 E-value=2.1e-14 Score=157.77 Aligned_cols=170 Identities=18% Similarity=0.340 Sum_probs=115.0
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCC-CceEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccc------cc-
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKR-PYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF------IE- 459 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~-~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~------~~- 459 (899)
.+|+||+.+++.|.+++...+.......+ ..+.+||+||||+|||++|+++|+.++..... ...|... ..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD--EPGCGECRACRTVLAG 82 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC--CCCCCCCHHHHHHhcC
Confidence 57889999999999999876533222222 23469999999999999999999998543211 0011111 00
Q ss_pred ccchhhccCCCCCcccccccchhhHHHHhC----CCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEE
Q psy2887 460 KHSISRLIGAPPGYIGYEEGGYLTEIVRRK----PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIV 535 (899)
Q Consensus 460 ~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~----~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI 535 (899)
.+..-.++......++.++.+.+.+.+... +++|+||||+|.+.+..+|.|++.||+ +..+++||
T Consensus 83 ~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEe-----------p~~~~~fI 151 (394)
T PRK07940 83 THPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEE-----------PPPRTVWL 151 (394)
T ss_pred CCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhc-----------CCCCCeEE
Confidence 111111222211223333445555555443 357999999999999999999999998 34567777
Q ss_pred EecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHH
Q psy2887 536 MTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN 595 (899)
Q Consensus 536 ~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~ 595 (899)
++|+.... +.|.++||| ..+.|.+++.+++.+.+.
T Consensus 152 L~a~~~~~------------------------llpTIrSRc-~~i~f~~~~~~~i~~~L~ 186 (394)
T PRK07940 152 LCAPSPED------------------------VLPTIRSRC-RHVALRTPSVEAVAEVLV 186 (394)
T ss_pred EEECChHH------------------------ChHHHHhhC-eEEECCCCCHHHHHHHHH
Confidence 77775332 567799999 899999999999877765
No 166
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.58 E-value=2.6e-14 Score=167.99 Aligned_cols=191 Identities=17% Similarity=0.304 Sum_probs=129.4
Q ss_pred ccCCChHHHHH---HHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchh
Q psy2887 388 KRVVGQDEAIS---AVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 464 (899)
Q Consensus 388 ~~v~gq~~~~~---~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 464 (899)
.+++||++.+. .+...+...+ .++++|+||||||||++|+++|+.+ ...++.+++...... ...
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~---------~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~~lna~~~~i~-dir 94 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADR---------VGSLILYGPPGVGKTTLARIIANHT---RAHFSSLNAVLAGVK-DLR 94 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCC---------CceEEEECCCCCCHHHHHHHHHHHh---cCcceeehhhhhhhH-HHH
Confidence 46789999885 4555554322 2379999999999999999999988 667777765421100 000
Q ss_pred hccCCCCCcccccccchhhHHHH-hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChh
Q psy2887 465 RLIGAPPGYIGYEEGGYLTEIVR-RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSD 543 (899)
Q Consensus 465 ~l~g~~~~~~g~~~~~~l~~~~~-~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~ 543 (899)
..+ ......+. .....+|||||||.++...|+.|+..++++. .++|.+|+..+.
T Consensus 95 ~~i------------~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~-------------IiLI~aTTenp~ 149 (725)
T PRK13341 95 AEV------------DRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGT-------------ITLIGATTENPY 149 (725)
T ss_pred HHH------------HHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCce-------------EEEEEecCCChH
Confidence 000 00111111 1235699999999999999999999998742 345555543221
Q ss_pred hhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHH
Q psy2887 544 KIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKIS 623 (899)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~ 623 (899)
..+.+.+++|+ .++.|+|++.+++..+++..+.+....+... .+.++++++++|+
T Consensus 150 ----------------------~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~--~v~I~deaL~~La 204 (725)
T PRK13341 150 ----------------------FEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDR--KVDLEPEAEKHLV 204 (725)
T ss_pred ----------------------hhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCc--ccCCCHHHHHHHH
Confidence 12456789998 7899999999999999999887654433223 3789999999999
Q ss_pred hcccCcccccccccccHHHHHHHH
Q psy2887 624 NIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 624 ~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
+.. -||++.....|+.++
T Consensus 205 ~~s------~GD~R~lln~Le~a~ 222 (725)
T PRK13341 205 DVA------NGDARSLLNALELAV 222 (725)
T ss_pred HhC------CCCHHHHHHHHHHHH
Confidence 832 366666655577655
No 167
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.57 E-value=3e-14 Score=163.61 Aligned_cols=226 Identities=15% Similarity=0.176 Sum_probs=164.8
Q ss_pred CCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCC
Q psy2887 390 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGA 469 (899)
Q Consensus 390 v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~ 469 (899)
++|.+..+..+...+.... ....+++++|++||||+++|++++........+|+.++|+.+......+.++|.
T Consensus 141 lig~s~~~~~~~~~i~~~~-------~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~ 213 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALVA-------PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGH 213 (441)
T ss_pred eEecCHHHHHHHHHHhhcc-------CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCC
Confidence 3455555555554443322 111268999999999999999999998777889999999988766556678887
Q ss_pred CCCcccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhh
Q psy2887 470 PPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEME 549 (899)
Q Consensus 470 ~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~ 549 (899)
..+....... .....+..+.+++||||||+.+++..|..|+..++++.+....+......++.+|++|+.+......
T Consensus 214 ~~~~~~~~~~-~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~-- 290 (441)
T PRK10365 214 EKGAFTGADK-RREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVN-- 290 (441)
T ss_pred CCCCcCCCCc-CCCCceeECCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHH--
Confidence 6553211111 1223445667899999999999999999999999999876544433344578899999876653322
Q ss_pred cCcHHHHHHHHHHHHhhcCChhHhhccCe-EEEecCCCH--HHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcc
Q psy2887 550 KGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIG 626 (899)
Q Consensus 550 ~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 626 (899)
.+.|+++|+.|+.. .|.++|+.+ +|+..+++.++.++....... ...++++++..|..
T Consensus 291 ---------------~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~--~~~~~~~a~~~L~~-- 351 (441)
T PRK10365 291 ---------------AGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKA--VKGFTPQAMDLLIH-- 351 (441)
T ss_pred ---------------cCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCC--CCCcCHHHHHHHHh--
Confidence 46799999999954 777788775 689999999988765543322 24589999999998
Q ss_pred cCcccccccccccHHHHHHHH
Q psy2887 627 FDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 627 ~~~~~~~~di~~~~~~l~~~l 647 (899)
|+|+.+++.+... +++++
T Consensus 352 ~~wpgN~reL~~~---~~~~~ 369 (441)
T PRK10365 352 YDWPGNIRELENA---VERAV 369 (441)
T ss_pred CCCCCHHHHHHHH---HHHHH
Confidence 8888888887777 66655
No 168
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.57 E-value=1.1e-14 Score=161.29 Aligned_cols=163 Identities=25% Similarity=0.397 Sum_probs=115.8
Q ss_pred ccCCChHHHHHHHHHHHHHhh--------cCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSR--------SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 459 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~--------~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 459 (899)
.+|.|.+..++.+..++.... .++.. ...+||+||||||||++|+++|+.+ +.+|+.+.++++..
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~----p~gVLL~GPPGTGKT~LAraIA~el---~~~fi~V~~seL~~ 255 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKP----PKGVILYGPPGTGKTLLAKAVANET---SATFLRVVGSELIQ 255 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCC----CcEEEEECCCCCCHHHHHHHHHHhh---CCCEEEEecchhhh
Confidence 567899999999999886421 23222 2269999999999999999999998 78899988877654
Q ss_pred ccchhhccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccC-----------HHHHHHHHHhhcCCceecCCCce
Q psy2887 460 KHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRT 526 (899)
Q Consensus 460 ~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~ 526 (899)
. |+|.... +.++..+....++||||||||.+. ..++..++.++..- + |.
T Consensus 256 k------------~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~L---d--g~- 317 (438)
T PTZ00361 256 K------------YLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQL---D--GF- 317 (438)
T ss_pred h------------hcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHH---h--hh-
Confidence 3 4444332 456666777778999999998663 23344444444320 0 00
Q ss_pred EecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHh--hccCeEEEecCCCHHHHHHHHHHHHH
Q psy2887 527 INFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQLN 599 (899)
Q Consensus 527 ~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~~~~~~i~~~~l~ 599 (899)
....++.||+|||... .++|.++ +|||..|.|++|+.++..+|+..++.
T Consensus 318 ~~~~~V~VI~ATNr~d------------------------~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 318 DSRGDVKVIMATNRIE------------------------SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred cccCCeEEEEecCChH------------------------HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 0124678999999532 2456666 69999999999999999999887664
No 169
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.57 E-value=7.7e-15 Score=162.64 Aligned_cols=164 Identities=26% Similarity=0.398 Sum_probs=115.2
Q ss_pred hhccCCChHHHHHHHHHHHHHhh--------cCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccc
Q psy2887 386 LCKRVVGQDEAISAVSNAIRRSR--------SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF 457 (899)
Q Consensus 386 l~~~v~gq~~~~~~l~~~i~~~~--------~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~ 457 (899)
...++.|.+.+++.+...+.... .|+.. | .++||+||||||||++|+++|+.+ +.+++.+.++++
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~---p-~gvLL~GppGtGKT~lakaia~~l---~~~~~~v~~~~l 192 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEP---P-KGVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGSEL 192 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCC---C-ceEEEECCCCCCHHHHHHHHHHhC---CCCEEecchHHH
Confidence 44678999999999998885431 12222 2 259999999999999999999998 778888876665
Q ss_pred ccccchhhccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccC-----------HHHHHHHHHhhcCCceecCCC
Q psy2887 458 IEKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRG 524 (899)
Q Consensus 458 ~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g 524 (899)
... |+|.... +.++..++...++||||||+|.+. +.++..+.+++..-.-.
T Consensus 193 ~~~------------~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~---- 256 (364)
T TIGR01242 193 VRK------------YIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGF---- 256 (364)
T ss_pred HHH------------hhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCC----
Confidence 432 3332222 345666666678999999999873 34555565555431000
Q ss_pred ceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHh--hccCeEEEecCCCHHHHHHHHHHHH
Q psy2887 525 RTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQL 598 (899)
Q Consensus 525 ~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~~~~~~i~~~~l 598 (899)
....++.||+|||... .+++.++ +|||..+.|++|+.++..+|+..++
T Consensus 257 --~~~~~v~vI~ttn~~~------------------------~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~ 306 (364)
T TIGR01242 257 --DPRGNVKVIAATNRPD------------------------ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHT 306 (364)
T ss_pred --CCCCCEEEEEecCChh------------------------hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHH
Confidence 0134778999999643 2455566 5999999999999999999987665
No 170
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.57 E-value=4.2e-14 Score=144.51 Aligned_cols=103 Identities=23% Similarity=0.376 Sum_probs=82.4
Q ss_pred CEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCCh
Q psy2887 491 YSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRP 570 (899)
Q Consensus 491 ~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 570 (899)
++||||||++.++-+.+..|.+.||+ ---.++|++||.|...+....-. --..++.
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEs------------e~aPIii~AtNRG~~kiRGTd~~------------sPhGIP~ 347 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALES------------ELAPIIILATNRGMTKIRGTDIE------------SPHGIPL 347 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhc------------ccCcEEEEEcCCceeeecccCCc------------CCCCCCH
Confidence 68999999999999999999999997 23468999999877655442110 0134788
Q ss_pred hHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhccc
Q psy2887 571 EFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGF 627 (899)
Q Consensus 571 ~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 627 (899)
+|++|+ .+|...|++++++++|++... ..++ +.++++|+++|...+-
T Consensus 348 DlLDRl-lII~t~py~~~EireIi~iRa-------~ee~--i~l~~~Ale~L~~ig~ 394 (450)
T COG1224 348 DLLDRL-LIISTRPYSREEIREIIRIRA-------KEED--IELSDDALEYLTDIGE 394 (450)
T ss_pred hhhhhe-eEEecCCCCHHHHHHHHHHhh-------hhhc--cccCHHHHHHHHhhch
Confidence 999999 899999999999999987665 2233 8899999999998554
No 171
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.57 E-value=4.4e-14 Score=158.95 Aligned_cols=165 Identities=27% Similarity=0.349 Sum_probs=126.7
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHh---cCCCEE
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN---NQKDII 88 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~---~~~~~i 88 (899)
...+++|+|||||||||+|+++|+.+ +..++.++.... ....++.+++.+.. .+...|
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~~~----------~~~~~~l~a~~~---------~~~~ir~ii~~~~~~~~~g~~~v 95 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAGAT----------DAPFEALSAVTS---------GVKDLREVIEEARQRRSAGRRTI 95 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEecccc---------cHHHHHHHHHHHHHhhhcCCceE
Confidence 44589999999999999999999987 667777664321 12245566665532 235679
Q ss_pred EEEccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHHHHHHHHHhhh
Q psy2887 89 IFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQ 168 (899)
Q Consensus 89 L~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~il~~~~ 168 (899)
|||||+|.+.. ...+.|+..++.+.+++|++|+... ...+++++++||..+.|++|+.++...+++..+
T Consensus 96 L~IDEi~~l~~--------~~q~~LL~~le~~~iilI~att~n~---~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l 164 (413)
T PRK13342 96 LFIDEIHRFNK--------AQQDALLPHVEDGTITLIGATTENP---SFEVNPALLSRAQVFELKPLSEEDIEQLLKRAL 164 (413)
T ss_pred EEEechhhhCH--------HHHHHHHHHhhcCcEEEEEeCCCCh---hhhccHHHhccceeeEeCCCCHHHHHHHHHHHH
Confidence 99999999854 4567889999999999999887654 347899999999889999999999999999877
Q ss_pred hhhhcccCC-CCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 169 KKYEVHHGV-EITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 169 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
..... ++ .++++++..+++.+.+.+. .++++++.++..
T Consensus 165 ~~~~~--~~i~i~~~al~~l~~~s~Gd~R------~aln~Le~~~~~ 203 (413)
T PRK13342 165 EDKER--GLVELDDEALDALARLANGDAR------RALNLLELAALG 203 (413)
T ss_pred HHhhc--CCCCCCHHHHHHHHHhCCCCHH------HHHHHHHHHHHc
Confidence 65432 44 7999999999998876544 677777776543
No 172
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=2.9e-14 Score=164.34 Aligned_cols=201 Identities=18% Similarity=0.266 Sum_probs=134.4
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCC-----ceE--Ee---ccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE-----SII--RI---DMSEF 457 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~-----~~~--~~---~~~~~ 457 (899)
.+++||+.+++.|.+++...+ ....+||+||+|||||++|+++|+.++.... +.+ +. +|..+
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr--------i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i 95 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR--------IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAI 95 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC--------CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHH
Confidence 678999999999999998643 1236999999999999999999999953211 100 00 11111
Q ss_pred ccccchhhccCCCCCcccccccchhhHHHHhC----CCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeE
Q psy2887 458 IEKHSISRLIGAPPGYIGYEEGGYLTEIVRRK----PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTI 533 (899)
Q Consensus 458 ~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~----~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~ 533 (899)
........+.-.....+|.+..+.+.+.+... .+.|+||||+|.++...+|.|++.||+ +...++
T Consensus 96 ~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEe-----------Pp~~~~ 164 (598)
T PRK09111 96 MEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEE-----------PPPHVK 164 (598)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHh-----------CCCCeE
Confidence 11100000000111233444445555555433 467999999999999999999999998 456788
Q ss_pred EEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCccee
Q psy2887 534 IVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLK 613 (899)
Q Consensus 534 iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 613 (899)
||++|+.... +.+.+.+|| ..+.|.+++.+++...+...+. .++ +.
T Consensus 165 fIl~tte~~k------------------------ll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~-------keg--i~ 210 (598)
T PRK09111 165 FIFATTEIRK------------------------VPVTVLSRC-QRFDLRRIEADVLAAHLSRIAA-------KEG--VE 210 (598)
T ss_pred EEEEeCChhh------------------------hhHHHHhhe-eEEEecCCCHHHHHHHHHHHHH-------HcC--CC
Confidence 8888863222 344588999 8999999999999998877763 344 67
Q ss_pred ecHHHHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 614 ISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 614 ~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
++++++++|+... -||+......|++++
T Consensus 211 i~~eAl~lIa~~a------~Gdlr~al~~Ldkli 238 (598)
T PRK09111 211 VEDEALALIARAA------EGSVRDGLSLLDQAI 238 (598)
T ss_pred CCHHHHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 8899999998733 244444433355443
No 173
>KOG0726|consensus
Probab=99.57 E-value=5.9e-15 Score=146.12 Aligned_cols=161 Identities=24% Similarity=0.387 Sum_probs=124.7
Q ss_pred ccCCChHHHHHHHHHHHHHh--------hcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 459 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~--------~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 459 (899)
.++.|.+..++.|.+++... ..|+.+|+ .++|||+||||||.||+++|+.. ...|+++-++++..
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPK----GVIlyG~PGTGKTLLAKAVANqT---SATFlRvvGseLiQ 257 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPK----GVILYGEPGTGKTLLAKAVANQT---SATFLRVVGSELIQ 257 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCC----eeEEeCCCCCchhHHHHHHhccc---chhhhhhhhHHHHH
Confidence 67889999999999988532 24554444 48999999999999999999988 88899999888866
Q ss_pred ccchhhccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccC-----------HHHHHHHHHhhcCCceecCCCce
Q psy2887 460 KHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRT 526 (899)
Q Consensus 460 ~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~ 526 (899)
+ |.|.... +++|..+....++|+||||||.+. .++|..+|.+|+.---.|+
T Consensus 258 k------------ylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFds---- 321 (440)
T KOG0726|consen 258 K------------YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS---- 321 (440)
T ss_pred H------------HhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccc----
Confidence 5 5554444 788999999999999999999665 3577777777764211122
Q ss_pred EecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHh--hccCeEEEecCCCHHHHHHHHHHH
Q psy2887 527 INFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQ 597 (899)
Q Consensus 527 ~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~~~~~~i~~~~ 597 (899)
..++-+||+||.- ..++|.|+ +|+|..|.|+-++....++|+..+
T Consensus 322 --rgDvKvimATnri------------------------e~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IH 368 (440)
T KOG0726|consen 322 --RGDVKVIMATNRI------------------------ETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIH 368 (440)
T ss_pred --cCCeEEEEecccc------------------------cccCHhhcCCCccccccccCCCchhhhceeEEEe
Confidence 3567799999952 34678787 899999999999999888886543
No 174
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.57 E-value=9e-15 Score=162.40 Aligned_cols=196 Identities=23% Similarity=0.348 Sum_probs=142.0
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCC----CceEEe-cccccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNE----ESIIRI-DMSEFIEKHS 462 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~----~~~~~~-~~~~~~~~~~ 462 (899)
.+++||+.+.+.|..++...+.. +.+||.||.|||||++||.+|+.+.... .|+... .|-++.....
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~--------hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIA--------HAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcch--------hhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCc
Confidence 66789999999999999876532 3699999999999999999999994332 222111 1112211111
Q ss_pred hhhccCCCCCcccccccchhhHHHHhCC----CEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEec
Q psy2887 463 ISRLIGAPPGYIGYEEGGYLTEIVRRKP----YSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTS 538 (899)
Q Consensus 463 ~~~l~g~~~~~~g~~~~~~l~~~~~~~~----~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ts 538 (899)
+..+-=......|.++.+.+.+.+...| +.|.+|||++.+....+|+||+.+|+ ++.+++||++|
T Consensus 88 ~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE-----------PP~hV~FIlAT 156 (515)
T COG2812 88 IDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEE-----------PPSHVKFILAT 156 (515)
T ss_pred ccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhccccc-----------CccCeEEEEec
Confidence 1100000112345666677777776554 68999999999999999999999999 78999999999
Q ss_pred CCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHH
Q psy2887 539 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAA 618 (899)
Q Consensus 539 n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~ 618 (899)
+... ++++..+||| +.+.|..++.+++...+...+. .++ +.+++++
T Consensus 157 Te~~------------------------Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~-------~E~--I~~e~~a 202 (515)
T COG2812 157 TEPQ------------------------KIPNTILSRC-QRFDFKRLDLEEIAKHLAAILD-------KEG--INIEEDA 202 (515)
T ss_pred CCcC------------------------cCchhhhhcc-ccccccCCCHHHHHHHHHHHHH-------hcC--CccCHHH
Confidence 8543 3667799999 8999999999999888777763 344 7888999
Q ss_pred HHHHHhcccCccccccccccc
Q psy2887 619 LKKISNIGFDLIYGARDVHGC 639 (899)
Q Consensus 619 ~~~L~~~~~~~~~~~~di~~~ 639 (899)
+..+++.+- .+.||.-..
T Consensus 203 L~~ia~~a~---Gs~RDalsl 220 (515)
T COG2812 203 LSLIARAAE---GSLRDALSL 220 (515)
T ss_pred HHHHHHHcC---CChhhHHHH
Confidence 999987432 445665555
No 175
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=2.1e-14 Score=164.55 Aligned_cols=200 Identities=18% Similarity=0.280 Sum_probs=132.4
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccc---cc--ccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF---IE--KHS 462 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~---~~--~~~ 462 (899)
.+++||+++++.+.+++...+. ...+||+||||||||++|+++|+.++.... ...-.|..+ .. ...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~--------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~-~~~~pcg~C~~C~~i~~~~ 86 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRL--------HHAYLFTGTRGVGKTTLARILAKSLNCETG-VTATPCGVCSACLEIDSGR 86 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--------CEEEEEECCCCCCHHHHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHhcCC
Confidence 6788999999999999886432 235799999999999999999999953211 000011111 00 000
Q ss_pred hhhccCCC-CCcccccccchhhHHHHhC----CCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEe
Q psy2887 463 ISRLIGAP-PGYIGYEEGGYLTEIVRRK----PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMT 537 (899)
Q Consensus 463 ~~~l~g~~-~~~~g~~~~~~l~~~~~~~----~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 537 (899)
...++.-. ....+.+..+.+.+.+... ++.|+||||+|+++...+|.|++.||+ ...+++||++
T Consensus 87 ~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEe-----------pp~~~~fIL~ 155 (527)
T PRK14969 87 FVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEE-----------PPEHVKFILA 155 (527)
T ss_pred CCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhC-----------CCCCEEEEEE
Confidence 00010000 0122222223344434332 357999999999999999999999998 3467788888
Q ss_pred cCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHH
Q psy2887 538 SNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKA 617 (899)
Q Consensus 538 sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 617 (899)
|+.... +.+.+++|| ..+.|.+++.+++.+.+...+. .++ +.++++
T Consensus 156 t~d~~k------------------------il~tI~SRc-~~~~f~~l~~~~i~~~L~~il~-------~eg--i~~~~~ 201 (527)
T PRK14969 156 TTDPQK------------------------IPVTVLSRC-LQFNLKQMPPPLIVSHLQHILE-------QEN--IPFDAT 201 (527)
T ss_pred eCChhh------------------------CchhHHHHH-HHHhcCCCCHHHHHHHHHHHHH-------HcC--CCCCHH
Confidence 874332 444589999 9999999999999988766663 345 668899
Q ss_pred HHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 618 ALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 618 ~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
++..+++.+ -||+......+++++
T Consensus 202 al~~la~~s------~Gslr~al~lldqai 225 (527)
T PRK14969 202 ALQLLARAA------AGSMRDALSLLDQAI 225 (527)
T ss_pred HHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 999998832 355555555566555
No 176
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.56 E-value=1.2e-13 Score=145.42 Aligned_cols=150 Identities=21% Similarity=0.286 Sum_probs=107.2
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCccccc--------------------cc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYE--------------------EG 479 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~--------------------~~ 479 (899)
+++|.||||||||++|+++|+.+ +.+++.++|.+-.. .+.++|...++.... ..
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~l---g~~~~~i~~~~~~~---~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKR---DRPVMLINGDAELT---TSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVD 96 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh---CCCEEEEeCCccCC---HHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecC
Confidence 69999999999999999999988 88999999876332 234455432221100 01
Q ss_pred chhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCC----ceE-ecCCeEEEEecCCChhhhhhhhcCcHH
Q psy2887 480 GYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRG----RTI-NFRNTIIVMTSNLGSDKIKEMEKGDKE 554 (899)
Q Consensus 480 ~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g----~~~-~~~~~~iI~tsn~~~~~~~~~~~~~~~ 554 (899)
+.+..+.+ .+++|+||||+++++++++.|+.+|+++.+...++ ..+ ...+..+|+|+|.....-
T Consensus 97 g~l~~A~~--~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g--------- 165 (262)
T TIGR02640 97 NRLTLAVR--EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAG--------- 165 (262)
T ss_pred chHHHHHH--cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccc---------
Confidence 22333333 34699999999999999999999999998775432 222 235778999999643210
Q ss_pred HHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHH
Q psy2887 555 IIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQ 597 (899)
Q Consensus 555 ~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~ 597 (899)
...++++|++|| ..+.+..++.++..+|+...
T Consensus 166 ----------~~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~ 197 (262)
T TIGR02640 166 ----------VHETQDALLDRL-ITIFMDYPDIDTETAILRAK 197 (262)
T ss_pred ----------eecccHHHHhhc-EEEECCCCCHHHHHHHHHHh
Confidence 123477899999 78899999999999987754
No 177
>PRK04195 replication factor C large subunit; Provisional
Probab=99.56 E-value=4.4e-14 Score=162.11 Aligned_cols=187 Identities=25% Similarity=0.364 Sum_probs=136.3
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhcc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 467 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (899)
.+++|++.+++.+...+..+..| .|..++||+||||||||++|+++|+.+ +..++.++.++......+..++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g-----~~~~~lLL~GppG~GKTtla~ala~el---~~~~ielnasd~r~~~~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKG-----KPKKALLLYGPPGVGKTSLAHALANDY---GWEVIELNASDQRTADVIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcC-----CCCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEEcccccccHHHHHHHH
Confidence 45789999999999999876633 223479999999999999999999999 7889999988765443333333
Q ss_pred CCCCCcccccccchhhHHHHhCCCEEEEEccccccCH----HHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChh
Q psy2887 468 GAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANS----DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSD 543 (899)
Q Consensus 468 g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~----~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~ 543 (899)
+..... ..++ ..+..||+|||+|.+.. ..++.|+.+++. .+..+|+++|....
T Consensus 86 ~~~~~~------~sl~----~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~-------------~~~~iIli~n~~~~ 142 (482)
T PRK04195 86 GEAATS------GSLF----GARRKLILLDEVDGIHGNEDRGGARAILELIKK-------------AKQPIILTANDPYD 142 (482)
T ss_pred HHhhcc------Cccc----CCCCeEEEEecCcccccccchhHHHHHHHHHHc-------------CCCCEEEeccCccc
Confidence 221100 0111 12467999999999876 678899999885 34457778885432
Q ss_pred hhhhhhcCcHHHHHHHHHHHHhhcCCh-hHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHH
Q psy2887 544 KIKEMEKGDKEIIKLAVMNEVKIYFRP-EFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKI 622 (899)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L 622 (899)
..+ .+.+|+ ..|.|++++.+++..++...+. .++ +.+++++++.|
T Consensus 143 ------------------------~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~-------~eg--i~i~~eaL~~I 188 (482)
T PRK04195 143 ------------------------PSLRELRNAC-LMIEFKRLSTRSIVPVLKRICR-------KEG--IECDDEALKEI 188 (482)
T ss_pred ------------------------cchhhHhccc-eEEEecCCCHHHHHHHHHHHHH-------HcC--CCCCHHHHHHH
Confidence 222 467787 7999999999999998877663 345 66889999999
Q ss_pred HhcccCcccccccccccHHHHHH
Q psy2887 623 SNIGFDLIYGARDVHGCKKSLSI 645 (899)
Q Consensus 623 ~~~~~~~~~~~~di~~~~~~l~~ 645 (899)
++. .-||+..+...|+.
T Consensus 189 a~~------s~GDlR~ain~Lq~ 205 (482)
T PRK04195 189 AER------SGGDLRSAINDLQA 205 (482)
T ss_pred HHH------cCCCHHHHHHHHHH
Confidence 983 35788888666655
No 178
>KOG0744|consensus
Probab=99.56 E-value=1.2e-14 Score=146.42 Aligned_cols=149 Identities=21% Similarity=0.350 Sum_probs=117.2
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHh----cCCCEEEE
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN----NQKDIIIF 90 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~----~~~~~iL~ 90 (899)
=|||+||||||||+|++++|+.+.-. .......+.++++++..+. ++|.+++.+.+..+|+.+.. .+.-..++
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLSIR-~~~~y~~~~liEinshsLF--SKWFsESgKlV~kmF~kI~ELv~d~~~lVfvL 255 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKLSIR-TNDRYYKGQLIEINSHSLF--SKWFSESGKLVAKMFQKIQELVEDRGNLVFVL 255 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhheee-ecCccccceEEEEehhHHH--HHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 36889999999999999999987421 1223446789999999998 88999999999999987753 22235788
Q ss_pred EccccccccCCCC-------CchhhHHHhhhhhhc----CCceEEEEecChhHHHHhhhcCHHHHhcccc-ccccCCCHH
Q psy2887 91 IDELHTMIGTGKV-------EGSIDAGNMLKPELS----RGELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIE 158 (899)
Q Consensus 91 iDEi~~l~~~~~~-------~~~~~~~~~l~~~l~----~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~-i~l~~p~~~ 158 (899)
|||+++|..++.+ .....+.|+++..++ ..++.+.+|+|-.+ .+|.||..|-+. .++.+|+.+
T Consensus 256 IDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~-----siD~AfVDRADi~~yVG~Pt~~ 330 (423)
T KOG0744|consen 256 IDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTD-----SIDVAFVDRADIVFYVGPPTAE 330 (423)
T ss_pred eHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHH-----HHHHHhhhHhhheeecCCccHH
Confidence 9999999865522 223457788888775 35677777777777 899999999996 889999999
Q ss_pred HHHHHHHhhhhhh
Q psy2887 159 ETISILRGLQKKY 171 (899)
Q Consensus 159 e~~~il~~~~~~~ 171 (899)
.+.+|++..++++
T Consensus 331 ai~~IlkscieEL 343 (423)
T KOG0744|consen 331 AIYEILKSCIEEL 343 (423)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888764
No 179
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=3.7e-14 Score=159.63 Aligned_cols=199 Identities=18% Similarity=0.313 Sum_probs=133.7
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCC-----ce-EEeccccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE-----SI-IRIDMSEFIEKH 461 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~-----~~-~~~~~~~~~~~~ 461 (899)
.+++||+.++..+...+...+. .+.+||+||||+|||++|+++|+.++.... ++ .+.+|..+....
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i--------~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~ 88 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRA--------AHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGT 88 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--------ceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCC
Confidence 6788999999999999875432 236999999999999999999999954311 10 111122221111
Q ss_pred c--hhhccCCCCCcccccccchhhHHHH----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEE
Q psy2887 462 S--ISRLIGAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIV 535 (899)
Q Consensus 462 ~--~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI 535 (899)
. ...+-|. ..+|.+..+.+.+.+. .+.+.|+||||+|.+....++.|++.||+ +...+++|
T Consensus 89 ~~d~~~i~g~--~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEe-----------p~~~~~~I 155 (451)
T PRK06305 89 SLDVLEIDGA--SHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEE-----------PPQHVKFF 155 (451)
T ss_pred CCceEEeecc--ccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhc-----------CCCCceEE
Confidence 0 0111111 1223333333433333 24568999999999999999999999997 34577788
Q ss_pred EecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeec
Q psy2887 536 MTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKIS 615 (899)
Q Consensus 536 ~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 615 (899)
++||.. ..+.+.+.+|+ .++.|.+++.+++.+.+...+. ..+ +.++
T Consensus 156 l~t~~~------------------------~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~-------~eg--~~i~ 201 (451)
T PRK06305 156 LATTEI------------------------HKIPGTILSRC-QKMHLKRIPEETIIDKLALIAK-------QEG--IETS 201 (451)
T ss_pred EEeCCh------------------------HhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHH-------HcC--CCCC
Confidence 888632 23456689999 7999999999999988766653 234 6789
Q ss_pred HHHHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 616 KAALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 616 ~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
+++++.|+. .+-||+......++++.
T Consensus 202 ~~al~~L~~------~s~gdlr~a~~~Lekl~ 227 (451)
T PRK06305 202 REALLPIAR------AAQGSLRDAESLYDYVV 227 (451)
T ss_pred HHHHHHHHH------HcCCCHHHHHHHHHHHH
Confidence 999999988 23356655544455443
No 180
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=3.1e-14 Score=161.14 Aligned_cols=200 Identities=20% Similarity=0.305 Sum_probs=133.2
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCce--EEecccccc---cccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI--IRIDMSEFI---EKHS 462 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~--~~~~~~~~~---~~~~ 462 (899)
.+++||+.+++.+..++...+. | +++||+||+|||||++|+++|+.+...+..- .+-.|..+. ....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl-------~-hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKL-------T-HAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQS 87 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-------C-ceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCC
Confidence 5788999999999998875431 2 3699999999999999999999995322110 111121110 0000
Q ss_pred hhhccC-CCCCcccccccchhhHHHHhC----CCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEe
Q psy2887 463 ISRLIG-APPGYIGYEEGGYLTEIVRRK----PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMT 537 (899)
Q Consensus 463 ~~~l~g-~~~~~~g~~~~~~l~~~~~~~----~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 537 (899)
. .++- .....+|.++.+.+...+... +.+|++|||+|.+....++.|+..||+ +...+++|++
T Consensus 88 ~-DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEE-----------Pp~~tvfIL~ 155 (605)
T PRK05896 88 V-DIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEE-----------PPKHVVFIFA 155 (605)
T ss_pred C-ceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHh-----------CCCcEEEEEE
Confidence 0 0000 001123333334444444433 357999999999999999999999998 4467888888
Q ss_pred cCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHH
Q psy2887 538 SNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKA 617 (899)
Q Consensus 538 sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 617 (899)
|+... .+.+.+.+|| .++.|.+++.+++...+...+. ..+ +.++++
T Consensus 156 Tt~~~------------------------KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~-------keg--i~Is~e 201 (605)
T PRK05896 156 TTEFQ------------------------KIPLTIISRC-QRYNFKKLNNSELQELLKSIAK-------KEK--IKIEDN 201 (605)
T ss_pred CCChH------------------------hhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHH-------HcC--CCCCHH
Confidence 87422 2456689999 7999999999999998776663 234 668899
Q ss_pred HHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 618 ALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 618 ~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
++..++..+ -||+......|+++.
T Consensus 202 al~~La~lS------~GdlR~AlnlLekL~ 225 (605)
T PRK05896 202 AIDKIADLA------DGSLRDGLSILDQLS 225 (605)
T ss_pred HHHHHHHHc------CCcHHHHHHHHHHHH
Confidence 999998733 355555544455543
No 181
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.56 E-value=1.3e-13 Score=150.60 Aligned_cols=187 Identities=15% Similarity=0.219 Sum_probs=134.6
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhcc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 467 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (899)
.+++||+++++.+...+.... .| +.++|+||||+|||++|+++++.+ +.+++.+++++ .....+.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-------~~-~~lll~G~~G~GKT~la~~l~~~~---~~~~~~i~~~~-~~~~~i~--- 85 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-------IP-NMLLHSPSPGTGKTTVAKALCNEV---GAEVLFVNGSD-CRIDFVR--- 85 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-------CC-eEEEeeCcCCCCHHHHHHHHHHHh---CccceEeccCc-ccHHHHH---
Confidence 567899999999988887422 12 256679999999999999999988 66788887765 1110000
Q ss_pred CCCCCcccccccchhhHHHH----hCCCEEEEEcccccc-CHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCCh
Q psy2887 468 GAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKA-NSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGS 542 (899)
Q Consensus 468 g~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~~-~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~ 542 (899)
..+..... ...++||||||+|.+ ....++.|..++++ ...++.||+|||...
T Consensus 86 ------------~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~-----------~~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 86 ------------NRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEA-----------YSKNCSFIITANNKN 142 (316)
T ss_pred ------------HHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHh-----------cCCCceEEEEcCChh
Confidence 01111111 134689999999999 67788888888886 235678999998432
Q ss_pred hhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHH
Q psy2887 543 DKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKI 622 (899)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L 622 (899)
.+.+.+.+|| ..+.|++++.++..+++...+.++...+...+ ..++++++..+
T Consensus 143 ------------------------~l~~~l~sR~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~--~~i~~~al~~l 195 (316)
T PHA02544 143 ------------------------GIIEPLRSRC-RVIDFGVPTKEEQIEMMKQMIVRCKGILEAEG--VEVDMKVLAAL 195 (316)
T ss_pred ------------------------hchHHHHhhc-eEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcC--CCCCHHHHHHH
Confidence 2567799999 68999999999999998888877766666666 66799999999
Q ss_pred HhcccCcccccccccccHHHHHH
Q psy2887 623 SNIGFDLIYGARDVHGCKKSLSI 645 (899)
Q Consensus 623 ~~~~~~~~~~~~di~~~~~~l~~ 645 (899)
++..+ +|++.....++.
T Consensus 196 ~~~~~------~d~r~~l~~l~~ 212 (316)
T PHA02544 196 VKKNF------PDFRRTINELQR 212 (316)
T ss_pred HHhcC------CCHHHHHHHHHH
Confidence 88332 555555444443
No 182
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.55 E-value=3.6e-14 Score=148.24 Aligned_cols=102 Identities=23% Similarity=0.356 Sum_probs=70.5
Q ss_pred CEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCCh
Q psy2887 491 YSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRP 570 (899)
Q Consensus 491 ~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 570 (899)
|+||||||++.++.+.+..|.++||. .-..++|++||.+...+...... .-..++.
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnralEs------------~~sPiiIlATNRg~~~irGt~~~------------sphGiP~ 334 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRALES------------ELSPIIILATNRGITKIRGTDII------------SPHGIPL 334 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHHTS------------TT--EEEEEES-SEEE-BTTS-E------------EETT--H
T ss_pred cceEEecchhhccHHHHHHHHHHhcC------------CCCcEEEEecCceeeeccCccCc------------CCCCCCc
Confidence 68999999999999999999999997 23568899999877654442110 1234688
Q ss_pred hHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcc
Q psy2887 571 EFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIG 626 (899)
Q Consensus 571 ~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 626 (899)
+|++|+ .+|...|++.+|+.+|+...+ +.++ +.++++|+++|.+.+
T Consensus 335 DlLDRl-lII~t~py~~~ei~~Il~iR~-------~~E~--v~i~~~al~~L~~ig 380 (398)
T PF06068_consen 335 DLLDRL-LIIRTKPYSEEEIKQILKIRA-------KEED--VEISEDALDLLTKIG 380 (398)
T ss_dssp HHHTTE-EEEEE----HHHHHHHHHHHH-------HHCT----B-HHHHHHHHHHH
T ss_pred chHhhc-EEEECCCCCHHHHHHHHHhhh-------hhhc--CcCCHHHHHHHHHHh
Confidence 999999 999999999999999987666 3344 889999999998754
No 183
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=4.2e-14 Score=160.01 Aligned_cols=201 Identities=19% Similarity=0.279 Sum_probs=132.2
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCC----CceE-Eecccccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNE----ESII-RIDMSEFIEKHS 462 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~----~~~~-~~~~~~~~~~~~ 462 (899)
.+++||+.++..+..++...+. .+.+||+||+|+|||++|+.+|+.+.... .++- +.+|..+.....
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i--------~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~ 87 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRV--------SHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSF 87 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCC
Confidence 6788999999999999976432 23588999999999999999999985311 1111 111211111100
Q ss_pred hhhccCCCCCcccccccchhhHHHHhC----CCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEec
Q psy2887 463 ISRLIGAPPGYIGYEEGGYLTEIVRRK----PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTS 538 (899)
Q Consensus 463 ~~~l~g~~~~~~g~~~~~~l~~~~~~~----~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ts 538 (899)
...+........|.+..+.+.+.+... .+.|+||||++.+....++.|+..|++ +...+++|++|
T Consensus 88 ~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEe-----------pp~~~v~Il~t 156 (486)
T PRK14953 88 PDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEE-----------PPPRTIFILCT 156 (486)
T ss_pred CcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhc-----------CCCCeEEEEEE
Confidence 000000001123333334555555443 357999999999999999999999997 34567777777
Q ss_pred CCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHH
Q psy2887 539 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAA 618 (899)
Q Consensus 539 n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~ 618 (899)
+... .+.+.+.+|+ ..+.|.|++.+++...+...++ ..+ +.+++++
T Consensus 157 t~~~------------------------kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k-------~eg--i~id~~a 202 (486)
T PRK14953 157 TEYD------------------------KIPPTILSRC-QRFIFSKPTKEQIKEYLKRICN-------EEK--IEYEEKA 202 (486)
T ss_pred CCHH------------------------HHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHH-------HcC--CCCCHHH
Confidence 6321 1344588999 7999999999999988776663 345 6789999
Q ss_pred HHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 619 LKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 619 ~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
+..|+.. .-|++......|++++
T Consensus 203 l~~La~~------s~G~lr~al~~Ldkl~ 225 (486)
T PRK14953 203 LDLLAQA------SEGGMRDAASLLDQAS 225 (486)
T ss_pred HHHHHHH------cCCCHHHHHHHHHHHH
Confidence 9999872 2355555544455554
No 184
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.54 E-value=4.1e-13 Score=146.76 Aligned_cols=158 Identities=24% Similarity=0.303 Sum_probs=114.6
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
....+++|+||||||||++|+++|+.+ +..+.......+. . ...+..++..+ ..+.|||
T Consensus 49 ~~~~~~ll~GppG~GKT~la~~ia~~l----------~~~~~~~~~~~~~----~----~~~l~~~l~~l---~~~~vl~ 107 (328)
T PRK00080 49 EALDHVLLYGPPGLGKTTLANIIANEM----------GVNIRITSGPALE----K----PGDLAAILTNL---EEGDVLF 107 (328)
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHHh----------CCCeEEEeccccc----C----hHHHHHHHHhc---ccCCEEE
Confidence 445689999999999999999999998 5555544332221 1 11344444443 3467999
Q ss_pred EccccccccCCCCCchhhHHHhhhhhhcC--------------------CceEEEEecChhHHHHhhhcCHHHHhcccc-
Q psy2887 91 IDELHTMIGTGKVEGSIDAGNMLKPELSR--------------------GELHCIGATTLNEYRQYIEKDAAFERRFQK- 149 (899)
Q Consensus 91 iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--------------------~~v~vI~at~~~~~~~~~~ld~al~~Rf~~- 149 (899)
|||+|.+... ..+.+...++. ..+.+|++||... .++++|++||..
T Consensus 108 IDEi~~l~~~--------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~-----~l~~~L~sRf~~~ 174 (328)
T PRK00080 108 IDEIHRLSPV--------VEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAG-----LLTSPLRDRFGIV 174 (328)
T ss_pred EecHhhcchH--------HHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcc-----cCCHHHHHhcCee
Confidence 9999998642 22334443321 2367899999887 789999999975
Q ss_pred ccccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHH
Q psy2887 150 ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAA 212 (899)
Q Consensus 150 i~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~ 212 (899)
+.|++|+.+++.+|++..... .++.++++++..+++.+.++. ..+..++..+.
T Consensus 175 ~~l~~~~~~e~~~il~~~~~~----~~~~~~~~~~~~ia~~~~G~p------R~a~~~l~~~~ 227 (328)
T PRK00080 175 QRLEFYTVEELEKIVKRSARI----LGVEIDEEGALEIARRSRGTP------RIANRLLRRVR 227 (328)
T ss_pred eecCCCCHHHHHHHHHHHHHH----cCCCcCHHHHHHHHHHcCCCc------hHHHHHHHHHH
Confidence 899999999999999987775 578899999999999987743 46666665544
No 185
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=99.54 E-value=1.1e-13 Score=144.85 Aligned_cols=119 Identities=23% Similarity=0.416 Sum_probs=93.7
Q ss_pred CcccccccccccHHHHHHHHHHhhccCCccceeeccccCCCCceEehhHHHHHhc----CCccEEEccCChHhHHhHhhh
Q psy2887 628 DLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLIN 703 (899)
Q Consensus 628 ~~~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~~~~l~~~----~~~~~~v~GNHe~~~l~~~~~ 703 (899)
.+.+.+|||||++..+.++++..++ .+.++++|+||++||||.+.+++.+++.+ ..++.+++||||.+.+....+
T Consensus 28 ~~i~vvGDiHG~~~~l~~ll~~~~~-~~~~~~vfLGD~VDrG~~s~e~l~~l~~lk~~~p~~v~llrGNHE~~~~~~~~g 106 (271)
T smart00156 28 APVTVCGDIHGQFDDLLRLFDLNGP-PPDTNYVFLGDYVDRGPFSIEVILLLFALKILYPNRVVLLRGNHESRSMNEIYG 106 (271)
T ss_pred CCEEEEEeCcCCHHHHHHHHHHcCC-CCCceEEEeCCccCCCCChHHHHHHHHHHHhcCCCCEEEEeccccHHHHHHhcc
Confidence 3557799999999999999988886 46789999999999999999999999876 347899999999998875544
Q ss_pred cccCchhchHHHhhCCcChHHHHHHHhcCCceEEeC-CEEEEeccccccc
Q psy2887 704 INKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIYYK-KYLMIHAGVAKQW 752 (899)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~~-~~~~vHAg~~~~~ 752 (899)
.... ............+.+|+..||++...+ ++++||||++|..
T Consensus 107 f~~e-----~~~~~~~~l~~~~~~~f~~LPl~aii~~~~~~vHgGi~~~~ 151 (271)
T smart00156 107 FYDE-----CKRKYGEEIYEKFQEAFSWLPLAALIDNKILCMHGGLSPDL 151 (271)
T ss_pred chhh-----hhhhcCHHHHHHHHHHHhhChhheEEcCeEEEEecCCCCcc
Confidence 2211 001111223467889999999998776 6999999999854
No 186
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.54 E-value=1.3e-13 Score=149.87 Aligned_cols=160 Identities=23% Similarity=0.286 Sum_probs=115.0
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
....+++|+||||||||++|+++|+.+ +..+......... ..+ .+...+..+ ..+.+||
T Consensus 28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~----------~~~~~~~~~~~~~----~~~----~l~~~l~~~---~~~~vl~ 86 (305)
T TIGR00635 28 EALDHLLLYGPPGLGKTTLAHIIANEM----------GVNLKITSGPALE----KPG----DLAAILTNL---EEGDVLF 86 (305)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHh----------CCCEEEeccchhc----Cch----hHHHHHHhc---ccCCEEE
Confidence 345689999999999999999999988 5555444332221 111 233333332 3466999
Q ss_pred EccccccccCCCCCchhhHHHhhhhhhcC--------------------CceEEEEecChhHHHHhhhcCHHHHhcccc-
Q psy2887 91 IDELHTMIGTGKVEGSIDAGNMLKPELSR--------------------GELHCIGATTLNEYRQYIEKDAAFERRFQK- 149 (899)
Q Consensus 91 iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--------------------~~v~vI~at~~~~~~~~~~ld~al~~Rf~~- 149 (899)
|||++.+.+. ..+.|...++. ..+.+|++||... .+++++.+||..
T Consensus 87 iDEi~~l~~~--------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~-----~l~~~l~sR~~~~ 153 (305)
T TIGR00635 87 IDEIHRLSPA--------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAG-----MLTSPLRDRFGII 153 (305)
T ss_pred EehHhhhCHH--------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCcc-----ccCHHHHhhcceE
Confidence 9999998652 23344444421 2377889998887 789999999975
Q ss_pred ccccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 150 ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 150 i~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
+.|++|+.+++.++++..... .++.++++++..+++.+.++. ..+..+++.+...
T Consensus 154 ~~l~~l~~~e~~~il~~~~~~----~~~~~~~~al~~ia~~~~G~p------R~~~~ll~~~~~~ 208 (305)
T TIGR00635 154 LRLEFYTVEELAEIVSRSAGL----LNVEIEPEAALEIARRSRGTP------RIANRLLRRVRDF 208 (305)
T ss_pred EEeCCCCHHHHHHHHHHHHHH----hCCCcCHHHHHHHHHHhCCCc------chHHHHHHHHHHH
Confidence 789999999999999877764 467899999999999987754 4677777765443
No 187
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=1.3e-13 Score=158.45 Aligned_cols=199 Identities=19% Similarity=0.311 Sum_probs=131.0
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCc--eEEeccc---ccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES--IIRIDMS---EFIEKHS 462 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~--~~~~~~~---~~~~~~~ 462 (899)
.+++||+.++..|..++...+. .+.+||+||+|+|||++|+++|+.+.....+ ..+..|. .+.....
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i--------~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKI--------ANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCC
Confidence 6788999999999999986432 2369999999999999999999999542111 0111111 1111100
Q ss_pred h--hhccCCCCCcccccccchhhHHHH----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEE
Q psy2887 463 I--SRLIGAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVM 536 (899)
Q Consensus 463 ~--~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ 536 (899)
. ..+-|.. ..+.+..+.+.+.+. .+.+.|+||||++.++...+|.|++.+++ +...+++|+
T Consensus 88 ~dv~~idgas--~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEe-----------pp~~~vfI~ 154 (563)
T PRK06647 88 LDVIEIDGAS--NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEE-----------PPPYIVFIF 154 (563)
T ss_pred CCeEEecCcc--cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhcc-----------CCCCEEEEE
Confidence 0 0111110 111112223332222 24567999999999999999999999997 456788888
Q ss_pred ecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecH
Q psy2887 537 TSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISK 616 (899)
Q Consensus 537 tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 616 (899)
+|+... .+.+.+.+|| ..+.|.+++.+++.+.+...+ ...+ +.+++
T Consensus 155 ~tte~~------------------------kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~-------~~eg--i~id~ 200 (563)
T PRK06647 155 ATTEVH------------------------KLPATIKSRC-QHFNFRLLSLEKIYNMLKKVC-------LEDQ--IKYED 200 (563)
T ss_pred ecCChH------------------------HhHHHHHHhc-eEEEecCCCHHHHHHHHHHHH-------HHcC--CCCCH
Confidence 886421 2456689999 789999999999988876655 2344 67899
Q ss_pred HHHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 617 AALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 617 ~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
+++.+|++.. -||+......|++++
T Consensus 201 eAl~lLa~~s------~GdlR~alslLdkli 225 (563)
T PRK06647 201 EALKWIAYKS------TGSVRDAYTLFDQVV 225 (563)
T ss_pred HHHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 9999998832 355555444455544
No 188
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.54 E-value=1.4e-13 Score=152.12 Aligned_cols=181 Identities=18% Similarity=0.354 Sum_probs=123.8
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCC--CceEEecccccccccchhh
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNE--ESIIRIDMSEFIEKHSISR 465 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~--~~~~~~~~~~~~~~~~~~~ 465 (899)
.+++|++.+++.+...+.... . ++++|+||||||||++|+++++.+.+.+ .+++.++++++..... .
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~-------~--~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~--~ 83 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPN-------L--PHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGK--K 83 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCC-------C--ceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcch--h
Confidence 567799999999988876321 1 2699999999999999999999996543 4578888876542211 0
Q ss_pred ccCCCCCc---------ccccccchhhHHH----H----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEe
Q psy2887 466 LIGAPPGY---------IGYEEGGYLTEIV----R----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTIN 528 (899)
Q Consensus 466 l~g~~~~~---------~g~~~~~~l~~~~----~----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~ 528 (899)
.++..+.+ .+......+...+ . ..+..+|||||++.+++..++.|+..++..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~----------- 152 (337)
T PRK12402 84 YLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQY----------- 152 (337)
T ss_pred hhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhc-----------
Confidence 01111100 0001111122221 1 134579999999999999999999999862
Q ss_pred cCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy2887 529 FRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKM 608 (899)
Q Consensus 529 ~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~ 608 (899)
..++.+|++++.... +.+.+.+|+ ..+.|.|++.+++.+++...+. ..
T Consensus 153 ~~~~~~Il~~~~~~~------------------------~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~-------~~ 200 (337)
T PRK12402 153 SRTCRFIIATRQPSK------------------------LIPPIRSRC-LPLFFRAPTDDELVDVLESIAE-------AE 200 (337)
T ss_pred cCCCeEEEEeCChhh------------------------CchhhcCCc-eEEEecCCCHHHHHHHHHHHHH-------Hc
Confidence 244667777764322 345588998 7899999999999888777653 34
Q ss_pred CcceeecHHHHHHHHh
Q psy2887 609 NMDLKISKAALKKISN 624 (899)
Q Consensus 609 ~~~~~~~~~~~~~L~~ 624 (899)
+ +.+++++++.|++
T Consensus 201 ~--~~~~~~al~~l~~ 214 (337)
T PRK12402 201 G--VDYDDDGLELIAY 214 (337)
T ss_pred C--CCCCHHHHHHHHH
Confidence 5 5689999999998
No 189
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.53 E-value=3.9e-14 Score=172.57 Aligned_cols=144 Identities=16% Similarity=0.248 Sum_probs=104.6
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccch----hhc-cCC------------------------C
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSI----SRL-IGA------------------------P 470 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~----~~l-~g~------------------------~ 470 (899)
.+||+||||||||.|||++|... +.||+.+.++++...... ..+ +|. .
T Consensus 1632 GILLiGPPGTGKTlLAKALA~es---~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~~ 1708 (2281)
T CHL00206 1632 GILVIGSIGTGRSYLVKYLATNS---YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNAL 1708 (2281)
T ss_pred ceEEECCCCCCHHHHHHHHHHhc---CCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcchh
Confidence 69999999999999999999999 999999999998753100 000 010 0
Q ss_pred CCccccccc----chhhHHHHhCCCEEEEEccccccCHH-----HHHHHHHhhcCCceecCCCceEecCCeEEEEecCCC
Q psy2887 471 PGYIGYEEG----GYLTEIVRRKPYSLILLDEIEKANSD-----VFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLG 541 (899)
Q Consensus 471 ~~~~g~~~~----~~l~~~~~~~~~~vl~lDEid~~~~~-----~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~ 541 (899)
.++.+..++ +.+++.+++..||||||||||.+... ..+.|+..|++... .....+++||+|||.+
T Consensus 1709 ~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~------~~s~~~VIVIAATNRP 1782 (2281)
T CHL00206 1709 TMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCE------RCSTRNILVIASTHIP 1782 (2281)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhccccc------cCCCCCEEEEEeCCCc
Confidence 111222222 45788899999999999999998863 36788888874210 0123578899999975
Q ss_pred hhhhhhhhcCcHHHHHHHHHHHHhhcCChhHh--hccCeEEEecCCCHHHHHHHHHH
Q psy2887 542 SDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANI 596 (899)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~~~~~~i~~~ 596 (899)
.. ++|+|+ +|||..|.++.|+..+.++++..
T Consensus 1783 D~------------------------LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~I 1815 (2281)
T CHL00206 1783 QK------------------------VDPALIAPNKLNTCIKIRRLLIPQQRKHFFT 1815 (2281)
T ss_pred cc------------------------CCHhHcCCCCCCeEEEeCCCCchhHHHHHHH
Confidence 43 788888 59999999999888777776653
No 190
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=99.53 E-value=2.4e-14 Score=153.55 Aligned_cols=123 Identities=20% Similarity=0.308 Sum_probs=96.1
Q ss_pred CcccccccccccHHHHHHHHHHhhccCCccceeeccccCCCCceEehhHHHHHhcC----CccEEEccCChHhHHhHhhh
Q psy2887 628 DLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMR----NYAKIVLGNHEIHLLDVLIN 703 (899)
Q Consensus 628 ~~~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~~~~l~~~~----~~~~~v~GNHe~~~l~~~~~ 703 (899)
.+.+.+|||||++..|.++++.+++......++|+||+||||+.+++|+.+++.++ .++.+++||||.+++.+..+
T Consensus 66 ~~i~VvGDIHG~~~dL~~ll~~~g~~~~~~~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~~~i~~~~G 145 (377)
T cd07418 66 CEVVVVGDVHGQLHDVLFLLEDAGFPDQNRFYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESKFCTSMYG 145 (377)
T ss_pred CCEEEEEecCCCHHHHHHHHHHhCCCCCCceEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeecccccchhhcc
Confidence 45688999999999999999998886555679999999999999999999998763 46889999999998876655
Q ss_pred cccCchhchHHHhhC--CcChHHHHHHHhcCCceEEeC-CEEEEecccccccch
Q psy2887 704 INKKSKLDTFDDILD--APDKKKLVSWLRTQPLAIYYK-KYLMIHAGVAKQWTA 754 (899)
Q Consensus 704 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~lp~~~~~~-~~~~vHAg~~~~~~~ 754 (899)
.... ....+.. ....+.+.+|++.||++..++ ++++||||+++.++.
T Consensus 146 f~~E----~~~~y~~~~~~l~~~~~~~f~~LPlaavI~~~i~cvHGGI~~~~~l 195 (377)
T cd07418 146 FEQE----VLTKYGDKGKHVYRKCLGCFEGLPLASIIAGRVYTAHGGLFRSPSL 195 (377)
T ss_pred cchh----hhhhcCchHHHHHHHHHHHHHhCCcEEEECCCEEEECCCcCCcccc
Confidence 3211 1111111 123467899999999987765 699999999876653
No 191
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=1.3e-13 Score=155.29 Aligned_cols=172 Identities=23% Similarity=0.248 Sum_probs=123.2
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCc--------------cCCCeEEEEehhhhhcCcccCchHHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNS--------------LLSKKILLLDIALLLAGTKYRGEFEDRLKKI 76 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~--------------l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~ 76 (899)
+.++.+||+|||||||||+|+++|+.+.....+.. -....++.++.. ...| ...++++
T Consensus 34 ~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa------~~~g--id~iR~i 105 (472)
T PRK14962 34 SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAA------SNRG--IDEIRKI 105 (472)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCc------ccCC--HHHHHHH
Confidence 34455899999999999999999998853211100 001134444331 1122 1235555
Q ss_pred HHHHHh---cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhcccccc
Q psy2887 77 LKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKIL 151 (899)
Q Consensus 77 ~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~ 151 (899)
.+.+.. .+...|+||||+|.|.. ...+.|+..++. +.+++|++|+.+. .+.+++.+||..+.
T Consensus 106 ~~~~~~~p~~~~~kVvIIDE~h~Lt~--------~a~~~LLk~LE~p~~~vv~Ilattn~~-----kl~~~L~SR~~vv~ 172 (472)
T PRK14962 106 RDAVGYRPMEGKYKVYIIDEVHMLTK--------EAFNALLKTLEEPPSHVVFVLATTNLE-----KVPPTIISRCQVIE 172 (472)
T ss_pred HHHHhhChhcCCeEEEEEEChHHhHH--------HHHHHHHHHHHhCCCcEEEEEEeCChH-----hhhHHHhcCcEEEE
Confidence 554431 23456999999999953 456788888876 6788888888665 68999999999999
Q ss_pred ccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHH
Q psy2887 152 VEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAA 213 (899)
Q Consensus 152 l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~ 213 (899)
|.+|+.++...+++..++. .++.++++++..+++.+.+.++ .+++.++.++.
T Consensus 173 f~~l~~~el~~~L~~i~~~----egi~i~~eal~~Ia~~s~GdlR------~aln~Le~l~~ 224 (472)
T PRK14962 173 FRNISDELIIKRLQEVAEA----EGIEIDREALSFIAKRASGGLR------DALTMLEQVWK 224 (472)
T ss_pred ECCccHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhCCCHH------HHHHHHHHHHH
Confidence 9999999999999888765 5788999999999998877655 67777776554
No 192
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.53 E-value=8.9e-14 Score=163.55 Aligned_cols=166 Identities=24% Similarity=0.332 Sum_probs=125.1
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHH----hcCCCE
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS----NNQKDI 87 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~----~~~~~~ 87 (899)
...+++|+|||||||||+|+++|+.+ +..++.++... .+. +.++..+..+. ......
T Consensus 51 ~~~slLL~GPpGtGKTTLA~aIA~~~----------~~~f~~lna~~--~~i-------~dir~~i~~a~~~l~~~~~~~ 111 (725)
T PRK13341 51 RVGSLILYGPPGVGKTTLARIIANHT----------RAHFSSLNAVL--AGV-------KDLRAEVDRAKERLERHGKRT 111 (725)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh----------cCcceeehhhh--hhh-------HHHHHHHHHHHHHhhhcCCce
Confidence 34589999999999999999999987 55566555421 111 12333333331 223467
Q ss_pred EEEEccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHHHHHHHHHhh
Q psy2887 88 IIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGL 167 (899)
Q Consensus 88 iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~il~~~ 167 (899)
+|||||+|.+.. ...+.|++.++.+.+++|++|+... ...+++++.+|+..+.|++++.+++..+++..
T Consensus 112 IL~IDEIh~Ln~--------~qQdaLL~~lE~g~IiLI~aTTenp---~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~ 180 (725)
T PRK13341 112 ILFIDEVHRFNK--------AQQDALLPWVENGTITLIGATTENP---YFEVNKALVSRSRLFRLKSLSDEDLHQLLKRA 180 (725)
T ss_pred EEEEeChhhCCH--------HHHHHHHHHhcCceEEEEEecCCCh---HhhhhhHhhccccceecCCCCHHHHHHHHHHH
Confidence 999999999854 4456788999999999999988765 34678999999988999999999999999988
Q ss_pred hhhhhc---ccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHH
Q psy2887 168 QKKYEV---HHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAA 213 (899)
Q Consensus 168 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~ 213 (899)
+..... ..++.++++++..+++.+.+.+. .+.++++.++.
T Consensus 181 l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R------~lln~Le~a~~ 223 (725)
T PRK13341 181 LQDKERGYGDRKVDLEPEAEKHLVDVANGDAR------SLLNALELAVE 223 (725)
T ss_pred HHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH------HHHHHHHHHHH
Confidence 874332 34688999999999999877655 77777777663
No 193
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=3.5e-13 Score=155.07 Aligned_cols=169 Identities=19% Similarity=0.204 Sum_probs=127.5
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHcCCCCCc--c------------CCCeEEEEehhhhhcCcccCchHHHHHHHHHHHH
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNS--L------------LSKKILLLDIALLLAGTKYRGEFEDRLKKILKEI 80 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l~~~~~p~~--l------------~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~ 80 (899)
.+||+||+||||||+|+++|+.+........ . ....+++++... ..+ ...++++.+.+
T Consensus 40 AyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas------~~~--VddiR~li~~~ 111 (647)
T PRK07994 40 AYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAAS------RTK--VEDTRELLDNV 111 (647)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccc------cCC--HHHHHHHHHHH
Confidence 3689999999999999999999855311000 0 011233333211 111 23466666665
Q ss_pred Hh---cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhccccccccCC
Q psy2887 81 SN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEP 155 (899)
Q Consensus 81 ~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p 155 (899)
.. .+...|+||||+|.|.. .+.|.|+..||. +.+++|++|+... .+.+.+++||..+.|..+
T Consensus 112 ~~~p~~g~~KV~IIDEah~Ls~--------~a~NALLKtLEEPp~~v~FIL~Tt~~~-----kLl~TI~SRC~~~~f~~L 178 (647)
T PRK07994 112 QYAPARGRFKVYLIDEVHMLSR--------HSFNALLKTLEEPPEHVKFLLATTDPQ-----KLPVTILSRCLQFHLKAL 178 (647)
T ss_pred HhhhhcCCCEEEEEechHhCCH--------HHHHHHHHHHHcCCCCeEEEEecCCcc-----ccchHHHhhheEeeCCCC
Confidence 42 23456999999999964 678899999986 6788999999887 788999999999999999
Q ss_pred CHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 156 DIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 156 ~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
+.++....|+.++.. .++.+++.++..++..++|.++ +++.+++.+.+.
T Consensus 179 s~~ei~~~L~~il~~----e~i~~e~~aL~~Ia~~s~Gs~R------~Al~lldqaia~ 227 (647)
T PRK07994 179 DVEQIRQQLEHILQA----EQIPFEPRALQLLARAADGSMR------DALSLTDQAIAS 227 (647)
T ss_pred CHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHH------HHHHHHHHHHHh
Confidence 999999999988765 4688999999999999988766 899999887654
No 194
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.53 E-value=4.9e-14 Score=170.20 Aligned_cols=165 Identities=19% Similarity=0.256 Sum_probs=119.2
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhc-------CcccCchHHHHHHHHHHHHHhcCC
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA-------GTKYRGEFEDRLKKILKEISNNQK 85 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~-------~~~~~g~~~~~l~~~~~~~~~~~~ 85 (899)
+.+++|+||||||||++|+++|+.+ +.+++.++++.+.. ...|.|.....+.+.+..+... .
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA~~l----------~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~-~ 415 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIAKAL----------NRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTK-N 415 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh----------cCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcC-C
Confidence 3479999999999999999999998 66777776543211 1245566555666777766432 2
Q ss_pred CEEEEEccccccccCCCCCchhhHHHhhhhhhcC-----------------CceEEEEecChhHHHHhhhcCHHHHhccc
Q psy2887 86 DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-----------------GELHCIGATTLNEYRQYIEKDAAFERRFQ 148 (899)
Q Consensus 86 ~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~-----------------~~v~vI~at~~~~~~~~~~ld~al~~Rf~ 148 (899)
| |+||||+|.+.+...+ +..++|++.|+. +++++|+|||... .++++|++||.
T Consensus 416 ~-villDEidk~~~~~~~----~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~-----~i~~~L~~R~~ 485 (775)
T TIGR00763 416 P-LFLLDEIDKIGSSFRG----DPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSID-----TIPRPLLDRME 485 (775)
T ss_pred C-EEEEechhhcCCccCC----CHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCch-----hCCHHHhCCee
Confidence 4 8999999999864321 233455555531 4688999999987 89999999999
Q ss_pred cccccCCCHHHHHHHHHhhhhh-hhc-----ccCCCCCHHHHHHHHhhhhhhcccC
Q psy2887 149 KILVEEPDIEETISILRGLQKK-YEV-----HHGVEITDPAIVAASELSYRYISDR 198 (899)
Q Consensus 149 ~i~l~~p~~~e~~~il~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (899)
+|.|+.|+.+++.+|++.++.. ... ..++.++++++.++++...+..+.|
T Consensus 486 vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R 541 (775)
T TIGR00763 486 VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVR 541 (775)
T ss_pred EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCCh
Confidence 9999999999999999876522 111 1246799999999988655544433
No 195
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=1.1e-13 Score=159.57 Aligned_cols=199 Identities=18% Similarity=0.262 Sum_probs=131.7
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCC---c-------eEEeccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE---S-------IIRIDMSEF 457 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~---~-------~~~~~~~~~ 457 (899)
.+++||+.++..|.+++...+.. +.+||+||+|||||++|+++|+.+..... + --+..|..+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~--------ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC 87 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVG--------HGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESC 87 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCC--------eeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHH
Confidence 67889999999999988754321 25999999999999999999999954210 0 001111111
Q ss_pred ---cccc--chhhccCCCCCcccccccchhhHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEe
Q psy2887 458 ---IEKH--SISRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTIN 528 (899)
Q Consensus 458 ---~~~~--~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~ 528 (899)
.... ....+-|. ...|.++.+.+.+.+.. +...|+||||+|.+....+|.|++.||+ +
T Consensus 88 ~~~~~g~~~n~~~~d~~--s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEe-----------P 154 (620)
T PRK14954 88 RDFDAGTSLNISEFDAA--SNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEE-----------P 154 (620)
T ss_pred HHHhccCCCCeEEeccc--ccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhC-----------C
Confidence 0000 00011111 11222233334444422 3467999999999999999999999998 4
Q ss_pred cCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy2887 529 FRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKM 608 (899)
Q Consensus 529 ~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~ 608 (899)
...+++|++++.. ..+.+.+.+|+ .++.|.+++.+++...+...+. ..
T Consensus 155 p~~tv~IL~t~~~------------------------~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~-------~e 202 (620)
T PRK14954 155 PPHAIFIFATTEL------------------------HKIPATIASRC-QRFNFKRIPLDEIQSQLQMICR-------AE 202 (620)
T ss_pred CCCeEEEEEeCCh------------------------hhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHH-------Hc
Confidence 4567788777632 12445589999 8999999999999888766653 23
Q ss_pred CcceeecHHHHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 609 NMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 609 ~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
+ +.++++++++|+... -||+......|+++.
T Consensus 203 g--i~I~~eal~~La~~s------~Gdlr~al~eLeKL~ 233 (620)
T PRK14954 203 G--IQIDADALQLIARKA------QGSMRDAQSILDQVI 233 (620)
T ss_pred C--CCCCHHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 4 678999999998833 355555555566555
No 196
>KOG0737|consensus
Probab=99.52 E-value=7.7e-14 Score=144.44 Aligned_cols=163 Identities=19% Similarity=0.315 Sum_probs=117.1
Q ss_pred ccCCChHHHHHHHHHHHHHh--------hcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 459 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~--------~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 459 (899)
.++.|.+.+++.+...+... ..++- +|...+||+||||||||++|+++|+.. +.+|+.+.++.+.+
T Consensus 92 ~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll---~p~kGiLL~GPpG~GKTmlAKA~Akea---ga~fInv~~s~lt~ 165 (386)
T KOG0737|consen 92 DDIGGLEEVKDALQELVILPLRRPELFAKGKLL---RPPKGILLYGPPGTGKTMLAKAIAKEA---GANFINVSVSNLTS 165 (386)
T ss_pred hhccchHHHHHHHHHHHhhcccchhhhcccccc---cCCccceecCCCCchHHHHHHHHHHHc---CCCcceeeccccch
Confidence 34556666666666655221 11221 233369999999999999999999999 99999999999987
Q ss_pred ccchhhccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccCH-----------HHHHHHHHhhcCCceecCCCce
Q psy2887 460 KHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS-----------DVFNILLQILDDGRLTDNRGRT 526 (899)
Q Consensus 460 ~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~-----------~~~~~Ll~~le~g~~~~~~g~~ 526 (899)
+ |.|..+. +.+|....+-.|+||||||+|++-. ..-+.+....+ |..++.
T Consensus 166 K------------WfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WD-Gl~s~~---- 228 (386)
T KOG0737|consen 166 K------------WFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWD-GLSSKD---- 228 (386)
T ss_pred h------------hHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhc-cccCCC----
Confidence 5 4455544 5567777778899999999996652 12344444444 332221
Q ss_pred EecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHH
Q psy2887 527 INFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLN 599 (899)
Q Consensus 527 ~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~ 599 (899)
...++|+.+||.+.+ +...+++|+...+.+.-++.+..++|+...|+
T Consensus 229 --~~rVlVlgATNRP~D------------------------lDeAiiRR~p~rf~V~lP~~~qR~kILkviLk 275 (386)
T KOG0737|consen 229 --SERVLVLGATNRPFD------------------------LDEAIIRRLPRRFHVGLPDAEQRRKILKVILK 275 (386)
T ss_pred --CceEEEEeCCCCCcc------------------------HHHHHHHhCcceeeeCCCchhhHHHHHHHHhc
Confidence 234678888888876 34458999999999999999999999988883
No 197
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=9.1e-14 Score=155.21 Aligned_cols=199 Identities=17% Similarity=0.236 Sum_probs=129.1
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCc----------eEEecccc-
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES----------IIRIDMSE- 456 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~----------~~~~~~~~- 456 (899)
.+|+||+.+++.|..++...+. .+.+||+||||||||++|+++|+.+...... --+..|..
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~--------~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c 87 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRV--------GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESC 87 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCc--------ceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHH
Confidence 6788999999999998875432 1259999999999999999999999542100 00011111
Q ss_pred --ccccc--chhhccCCCCCcccccccchhhHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEe
Q psy2887 457 --FIEKH--SISRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTIN 528 (899)
Q Consensus 457 --~~~~~--~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~ 528 (899)
+.... ....+-|. ...|.++.+.+.+.+.. ++..|+||||++.++...++.|++.+++ +
T Consensus 88 ~~~~~~~~~n~~~~~~~--~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEe-----------p 154 (397)
T PRK14955 88 RDFDAGTSLNISEFDAA--SNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEE-----------P 154 (397)
T ss_pred HHHhcCCCCCeEeeccc--ccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhc-----------C
Confidence 00000 00011110 11122222333344432 3457999999999999999999999997 3
Q ss_pred cCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy2887 529 FRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKM 608 (899)
Q Consensus 529 ~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~ 608 (899)
...+++|++++... .+.+.+.+|+ .++.|.|++.+++.+.+...++ ..
T Consensus 155 ~~~t~~Il~t~~~~------------------------kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~-------~~ 202 (397)
T PRK14955 155 PPHAIFIFATTELH------------------------KIPATIASRC-QRFNFKRIPLEEIQQQLQGICE-------AE 202 (397)
T ss_pred CCCeEEEEEeCChH------------------------HhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHH-------Hc
Confidence 45677777775321 2445588999 7999999999999888776663 23
Q ss_pred CcceeecHHHHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 609 NMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 609 ~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
+ +.++++++++|+... -||+......++++.
T Consensus 203 g--~~i~~~al~~l~~~s------~g~lr~a~~~L~kl~ 233 (397)
T PRK14955 203 G--ISVDADALQLIGRKA------QGSMRDAQSILDQVI 233 (397)
T ss_pred C--CCCCHHHHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 4 679999999998833 355555444455544
No 198
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=2.1e-13 Score=152.54 Aligned_cols=175 Identities=22% Similarity=0.238 Sum_probs=134.4
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCC--------------ccCCCeEEEEehhhhhcCcccCchHHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPN--------------SLLSKKILLLDIALLLAGTKYRGEFEDRLKKI 76 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~--------------~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~ 76 (899)
+-+.++||+||+|+||||+|+.+|+.+.....|. .-....+++++.++ ..| ...++++
T Consensus 33 ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas------~~~--vddIR~I 104 (491)
T PRK14964 33 KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAAS------NTS--VDDIKVI 104 (491)
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEeccc------CCC--HHHHHHH
Confidence 4455799999999999999999999875432221 11244566666532 122 2347777
Q ss_pred HHHHHhc---CCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhcccccc
Q psy2887 77 LKEISNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKIL 151 (899)
Q Consensus 77 ~~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~ 151 (899)
++.+... +...|++|||+|.|.. .+.|.|+..|+. ..+.+|++|+... .+.+.+++||..+.
T Consensus 105 ie~~~~~P~~~~~KVvIIDEah~Ls~--------~A~NaLLK~LEePp~~v~fIlatte~~-----Kl~~tI~SRc~~~~ 171 (491)
T PRK14964 105 LENSCYLPISSKFKVYIIDEVHMLSN--------SAFNALLKTLEEPAPHVKFILATTEVK-----KIPVTIISRCQRFD 171 (491)
T ss_pred HHHHHhccccCCceEEEEeChHhCCH--------HHHHHHHHHHhCCCCCeEEEEEeCChH-----HHHHHHHHhheeee
Confidence 7766422 3456999999999854 577889999985 5688888888776 67889999999999
Q ss_pred ccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhh
Q psy2887 152 VEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIK 216 (899)
Q Consensus 152 l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~ 216 (899)
|..++.++...+++.++++ .++.++++++..+++.+++.+. ++..+++.++....
T Consensus 172 f~~l~~~el~~~L~~ia~~----Egi~i~~eAL~lIa~~s~GslR------~alslLdqli~y~~ 226 (491)
T PRK14964 172 LQKIPTDKLVEHLVDIAKK----ENIEHDEESLKLIAENSSGSMR------NALFLLEQAAIYSN 226 (491)
T ss_pred cccccHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHH------HHHHHHHHHHHhcC
Confidence 9999999999999988876 6788999999999999987665 78889988876543
No 199
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=99.51 E-value=2.4e-14 Score=152.13 Aligned_cols=118 Identities=20% Similarity=0.323 Sum_probs=92.7
Q ss_pred CcccccccccccHHHHHHHHHHhhccCCccceeeccccCCCCceEehhHHHHHhc----CCccEEEccCChHhHHhHhhh
Q psy2887 628 DLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLIN 703 (899)
Q Consensus 628 ~~~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~~~~l~~~----~~~~~~v~GNHe~~~l~~~~~ 703 (899)
.+.+.+||||||+..|.++++..++.+..++++|+||+||||+.+++|+.+++.+ .+++.++|||||.+.+....+
T Consensus 60 ~~~~VvGDIHG~~~dL~~ll~~~g~~~~~~~ylFLGDyVDRG~~S~Evl~ll~~lki~~p~~v~lLRGNHE~~~~~~~~g 139 (316)
T cd07417 60 EKITVCGDTHGQFYDLLNIFELNGLPSETNPYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETDNMNKMYG 139 (316)
T ss_pred ceeEEeecccCCHHHHHHHHHhcCCCCccCeEEEEeeEecCCCChHHHHHHHHHhhhccCCceEEEeeccchHHHHHHhh
Confidence 3468899999999999999999998766778999999999999999999999876 356899999999988876554
Q ss_pred cccCchhchHHHhhCCcChHHHHHHHhcCCceEEeC-CEEEEeccccc
Q psy2887 704 INKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIYYK-KYLMIHAGVAK 750 (899)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~~-~~~~vHAg~~~ 750 (899)
...... ..+ .......+.+|+..||++..++ ++++||||+++
T Consensus 140 f~~e~~-~k~----~~~l~~~~~~~f~~LPlaaii~~~~~~vHgGi~~ 182 (316)
T cd07417 140 FEGEVK-AKY----NEQMFDLFSEVFNWLPLAHLINGKVLVVHGGLFS 182 (316)
T ss_pred hcchhh-hcc----cHHHHHHHHHHHHhchHhheeCCeEEEEcccccc
Confidence 322110 111 1122355788999999987764 69999999964
No 200
>PHA02244 ATPase-like protein
Probab=99.51 E-value=1e-12 Score=139.32 Aligned_cols=170 Identities=12% Similarity=0.159 Sum_probs=113.1
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhcc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 467 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (899)
...+|...........+.++... ..++||+||||||||++|+++|..+ +.+|+.++. +.+ ...+.
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~-------~~PVLL~GppGtGKTtLA~aLA~~l---g~pfv~In~--l~d---~~~L~ 160 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNA-------NIPVFLKGGAGSGKNHIAEQIAEAL---DLDFYFMNA--IMD---EFELK 160 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhc-------CCCEEEECCCCCCHHHHHHHHHHHh---CCCEEEEec--ChH---HHhhc
Confidence 34556666665555544433211 1159999999999999999999998 889998873 222 12233
Q ss_pred CCCCCcccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhh
Q psy2887 468 GAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKE 547 (899)
Q Consensus 468 g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~ 547 (899)
|... ..|.-....+..++ ..+++|+|||++.++++++..|..+++++.+....+......+..+|+|+|........
T Consensus 161 G~i~-~~g~~~dgpLl~A~--~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~ 237 (383)
T PHA02244 161 GFID-ANGKFHETPFYEAF--KKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADH 237 (383)
T ss_pred cccc-ccccccchHHHHHh--hcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCccc
Confidence 3211 11111112344443 34579999999999999999999999988777665555556788999999974432222
Q ss_pred hhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHH
Q psy2887 548 MEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKN 589 (899)
Q Consensus 548 ~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~ 589 (899)
.+.. .+.+.+++++|| .+|.|..+++.+
T Consensus 238 ~y~G-------------~k~L~~AllDRF-v~I~~dyp~~~E 265 (383)
T PHA02244 238 IYVA-------------RNKIDGATLDRF-APIEFDYDEKIE 265 (383)
T ss_pred ccCC-------------CcccCHHHHhhc-EEeeCCCCcHHH
Confidence 1100 356789999999 789998887433
No 201
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=99.51 E-value=7.3e-14 Score=149.18 Aligned_cols=151 Identities=22% Similarity=0.386 Sum_probs=106.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCcccccccccccHHHHHHHHHHhhccCC-------cc
Q psy2887 585 LNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSP-------EA 657 (899)
Q Consensus 585 l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l~~~~~~~~-------~~ 657 (899)
++.+++.++++....-+ +.+..-+.++ .+.+.+||||||+..|.++++.+++.+. ..
T Consensus 21 ~~~~~i~~l~~~~~~il----~~e~~~~~i~------------~~~~viGDIHG~~~~L~~ll~~~g~~~~~~~~~~~~~ 84 (311)
T cd07419 21 FNWNEILELCDAAEDIF----KQEPMVLRLR------------APIKIFGDIHGQFGDLMRLFDEYGSPVTEAAGDIEYI 84 (311)
T ss_pred CCHHHHHHHHHHHHHHH----HhCCCeEeeC------------CCEEEEEeccCCHHHHHHHHHHcCCCcccccCCCcCc
Confidence 56788888776555333 3232212221 3457799999999999999988876432 24
Q ss_pred ceeeccccCCCCceEehhHHHHHhcC----CccEEEccCChHhHHhHhhhcccCchhchHHHhhC--CcChHHHHHHHhc
Q psy2887 658 NFIFLGDLINKGPQSLDTLRMVYSMR----NYAKIVLGNHEIHLLDVLININKKSKLDTFDDILD--APDKKKLVSWLRT 731 (899)
Q Consensus 658 ~li~~GD~~d~g~~~~~~~~~l~~~~----~~~~~v~GNHe~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~ 731 (899)
+++|+||++||||.+++|+.++++++ .+++++|||||.+++.+..+.... ....+..... ......+.+|+..
T Consensus 85 ~~vfLGDyVDRGp~s~evl~ll~~lk~~~p~~v~lLRGNHE~~~l~~~~gf~~e-~~~~~~~~~~~~~~l~~~~~~~f~~ 163 (311)
T cd07419 85 DYLFLGDYVDRGSNSLETICLLLALKVKYPNQIHLIRGNHEDRDINALFGFREE-CKERLGEDPNDGDSVWRRINRLFEW 163 (311)
T ss_pred eEEEECCccCCCCChHHHHHHHHHhhhcCCCcEEEeccccchHHHHHHhcccHH-HHHhcCccchhhHHHHHHHHHHHHh
Confidence 79999999999999999999998773 468899999999999876553311 0011111000 1124667889999
Q ss_pred CCceEEe-CCEEEEeccccccc
Q psy2887 732 QPLAIYY-KKYLMIHAGVAKQW 752 (899)
Q Consensus 732 lp~~~~~-~~~~~vHAg~~~~~ 752 (899)
||++... +++++||||++|..
T Consensus 164 LPl~avi~~~~l~vHgGi~p~~ 185 (311)
T cd07419 164 LPLAAIIEDKILCMHGGIGRSI 185 (311)
T ss_pred CchhheecccEEEEccCCCCCC
Confidence 9988554 57999999999864
No 202
>PLN03025 replication factor C subunit; Provisional
Probab=99.50 E-value=2.1e-13 Score=148.38 Aligned_cols=163 Identities=18% Similarity=0.218 Sum_probs=119.3
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHh------cCC
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN------NQK 85 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~------~~~ 85 (899)
..+|+||+|||||||||+|+++|+.+..... ...+++++.+.. .|. ..++..++.... .+.
T Consensus 33 ~~~~lll~Gp~G~GKTtla~~la~~l~~~~~-----~~~~~eln~sd~------~~~--~~vr~~i~~~~~~~~~~~~~~ 99 (319)
T PLN03025 33 NMPNLILSGPPGTGKTTSILALAHELLGPNY-----KEAVLELNASDD------RGI--DVVRNKIKMFAQKKVTLPPGR 99 (319)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHhcccC-----ccceeeeccccc------ccH--HHHHHHHHHHHhccccCCCCC
Confidence 3458999999999999999999999843211 123444443221 111 124444333221 123
Q ss_pred CEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHHHHHHH
Q psy2887 86 DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISI 163 (899)
Q Consensus 86 ~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~i 163 (899)
..|++|||+|.|.. .+.+.|+..++. ....+|.+||... .+.+++++|+..+.|+.|+.++...+
T Consensus 100 ~kviiiDE~d~lt~--------~aq~aL~~~lE~~~~~t~~il~~n~~~-----~i~~~L~SRc~~i~f~~l~~~~l~~~ 166 (319)
T PLN03025 100 HKIVILDEADSMTS--------GAQQALRRTMEIYSNTTRFALACNTSS-----KIIEPIQSRCAIVRFSRLSDQEILGR 166 (319)
T ss_pred eEEEEEechhhcCH--------HHHHHHHHHHhcccCCceEEEEeCCcc-----ccchhHHHhhhcccCCCCCHHHHHHH
Confidence 57999999999964 456778888874 4567888888776 77899999999999999999999999
Q ss_pred HHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHH
Q psy2887 164 LRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDE 210 (899)
Q Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~ 210 (899)
++.++++ .++.++++++.+++..+.+.++ .++..++.
T Consensus 167 L~~i~~~----egi~i~~~~l~~i~~~~~gDlR------~aln~Lq~ 203 (319)
T PLN03025 167 LMKVVEA----EKVPYVPEGLEAIIFTADGDMR------QALNNLQA 203 (319)
T ss_pred HHHHHHH----cCCCCCHHHHHHHHHHcCCCHH------HHHHHHHH
Confidence 9988876 6888999999999999988665 77777763
No 203
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.4e-13 Score=153.49 Aligned_cols=181 Identities=19% Similarity=0.232 Sum_probs=135.1
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCc-------ccCchHHHHHHHHHHHHHhcC
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGT-------KYRGEFEDRLKKILKEISNNQ 84 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~-------~~~g~~~~~l~~~~~~~~~~~ 84 (899)
..+-++|+||||+|||+|++.+|+.+ +..++.+.++.+...+ .|+|...-++-+-+..+...+
T Consensus 349 kGpILcLVGPPGVGKTSLgkSIA~al----------~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~N 418 (782)
T COG0466 349 KGPILCLVGPPGVGKTSLGKSIAKAL----------GRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKN 418 (782)
T ss_pred CCcEEEEECCCCCCchhHHHHHHHHh----------CCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcC
Confidence 33456889999999999999999999 8899999887664332 366776666767777776433
Q ss_pred CCEEEEEccccccccCCCCCchhhHHHhhhhhhc-----------------CCceEEEEecChhHHHHhhhcCHHHHhcc
Q psy2887 85 KDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS-----------------RGELHCIGATTLNEYRQYIEKDAAFERRF 147 (899)
Q Consensus 85 ~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~-----------------~~~v~vI~at~~~~~~~~~~ld~al~~Rf 147 (899)
| +++|||+|.+..+..+.. +.+|+..|+ -.+|.||+|.|..+ .++.+|+.|+
T Consensus 419 -P-v~LLDEIDKm~ss~rGDP----aSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~-----tIP~PLlDRM 487 (782)
T COG0466 419 -P-VFLLDEIDKMGSSFRGDP----ASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLD-----TIPAPLLDRM 487 (782)
T ss_pred -C-eEEeechhhccCCCCCCh----HHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccc-----cCChHHhcce
Confidence 4 899999999987654333 334555552 24799999999988 8999999999
Q ss_pred ccccccCCCHHHHHHHHHhhh-hhhhc-----ccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHH
Q psy2887 148 QKILVEEPDIEETISILRGLQ-KKYEV-----HHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAA 213 (899)
Q Consensus 148 ~~i~l~~p~~~e~~~il~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~ 213 (899)
.+|++.-++.+|..+|.+.++ .+.-. ...+.++++++..+++...|..+-|.+-.....+++.++.
T Consensus 488 EiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~ 559 (782)
T COG0466 488 EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAK 559 (782)
T ss_pred eeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999997654 22221 2346899999999998888877755555555555554443
No 204
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=2.5e-13 Score=153.38 Aligned_cols=174 Identities=23% Similarity=0.235 Sum_probs=131.3
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCC--------CC----------ccCCCeEEEEehhhhhcCcccCchHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEV--------PN----------SLLSKKILLLDIALLLAGTKYRGEFEDR 72 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~--------p~----------~l~~~~~~~~~~~~l~~~~~~~g~~~~~ 72 (899)
+...++||+|||||||||+|+++|+.+..... |. ......+++++.. +.. ....
T Consensus 41 ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaa------s~~--~vd~ 112 (507)
T PRK06645 41 RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAA------SKT--SVDD 112 (507)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeecc------CCC--CHHH
Confidence 44568999999999999999999999854210 00 0111234444431 111 2345
Q ss_pred HHHHHHHHHhc---CCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhcc
Q psy2887 73 LKKILKEISNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRF 147 (899)
Q Consensus 73 l~~~~~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf 147 (899)
++.+++.+... +...|++|||+|.|.. .+.+.|+..++. ..+++|++|+... .+.+++++|+
T Consensus 113 Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~--------~a~naLLk~LEepp~~~vfI~aTte~~-----kI~~tI~SRc 179 (507)
T PRK06645 113 IRRIIESAEYKPLQGKHKIFIIDEVHMLSK--------GAFNALLKTLEEPPPHIIFIFATTEVQ-----KIPATIISRC 179 (507)
T ss_pred HHHHHHHHHhccccCCcEEEEEEChhhcCH--------HHHHHHHHHHhhcCCCEEEEEEeCChH-----HhhHHHHhcc
Confidence 77777776522 3356999999999853 567788888875 5688888888776 7889999999
Q ss_pred ccccccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhh
Q psy2887 148 QKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 215 (899)
Q Consensus 148 ~~i~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~ 215 (899)
..+.|..++.++...+++.++++ .++.++++++..++..+++.+. +++++++.++...
T Consensus 180 ~~~ef~~ls~~el~~~L~~i~~~----egi~ie~eAL~~Ia~~s~GslR------~al~~Ldkai~~~ 237 (507)
T PRK06645 180 QRYDLRRLSFEEIFKLLEYITKQ----ENLKTDIEALRIIAYKSEGSAR------DAVSILDQAASMS 237 (507)
T ss_pred eEEEccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHH------HHHHHHHHHHHhh
Confidence 99999999999999999988876 5788999999999999887665 8999999987654
No 205
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=1.9e-13 Score=158.95 Aligned_cols=169 Identities=18% Similarity=0.195 Sum_probs=125.8
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHcCCC----CCc----------cCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHH
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRIINGEV----PNS----------LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEI 80 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l~~~~~----p~~----------l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~ 80 (899)
-+||+|||||||||+|+++|+.+..... |.. .....++.++. ....+ ...++++.+.+
T Consensus 40 AyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidA------as~~k--VDdIReLie~v 111 (944)
T PRK14949 40 AYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDA------ASRTK--VDDTRELLDNV 111 (944)
T ss_pred EEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEecc------ccccC--HHHHHHHHHHH
Confidence 3589999999999999999999854211 100 00111222322 11111 22356666555
Q ss_pred Hh---cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhccccccccCC
Q psy2887 81 SN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEP 155 (899)
Q Consensus 81 ~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p 155 (899)
.. .+...|+||||+|.|.. ++.+.|+..||. +.+++|++|+... .+.+.+++||..+.|.++
T Consensus 112 ~~~P~~gk~KViIIDEAh~LT~--------eAqNALLKtLEEPP~~vrFILaTTe~~-----kLl~TIlSRCq~f~fkpL 178 (944)
T PRK14949 112 QYRPSRGRFKVYLIDEVHMLSR--------SSFNALLKTLEEPPEHVKFLLATTDPQ-----KLPVTVLSRCLQFNLKSL 178 (944)
T ss_pred HhhhhcCCcEEEEEechHhcCH--------HHHHHHHHHHhccCCCeEEEEECCCch-----hchHHHHHhheEEeCCCC
Confidence 41 23456999999999953 688899999986 6788999998887 688999999999999999
Q ss_pred CHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 156 DIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 156 ~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
+.++....|+.++.. .++.++++++..++..+.|.++ +++.+++.+.+.
T Consensus 179 s~eEI~~~L~~il~~----EgI~~edeAL~lIA~~S~Gd~R------~ALnLLdQala~ 227 (944)
T PRK14949 179 TQDEIGTQLNHILTQ----EQLPFEAEALTLLAKAANGSMR------DALSLTDQAIAF 227 (944)
T ss_pred CHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHH------HHHHHHHHHHHh
Confidence 999999999888776 4788999999999999988665 899999887743
No 206
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=1.1e-12 Score=148.95 Aligned_cols=173 Identities=20% Similarity=0.201 Sum_probs=127.4
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCC----CC----------ccCCCeEEEEehhhhhcCcccCchHHHHHHHHH
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEV----PN----------SLLSKKILLLDIALLLAGTKYRGEFEDRLKKIL 77 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~----p~----------~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~ 77 (899)
....+||+|||||||||+|+.+|+.+..... |. ......++.++.. ...|. ..++.++
T Consensus 37 l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaa------s~~gv--d~ir~ii 108 (546)
T PRK14957 37 VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAA------SRTGV--EETKEIL 108 (546)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecc------cccCH--HHHHHHH
Confidence 3334789999999999999999998853210 10 0011234444321 11221 2355565
Q ss_pred HHHHh---cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhccccccc
Q psy2887 78 KEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILV 152 (899)
Q Consensus 78 ~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l 152 (899)
+.+.. .+...|+||||+|.|.. .+.+.|+..|+. +.+++|++|+... .+.+.+++||..+.|
T Consensus 109 ~~~~~~p~~g~~kViIIDEa~~ls~--------~a~naLLK~LEepp~~v~fIL~Ttd~~-----kil~tI~SRc~~~~f 175 (546)
T PRK14957 109 DNIQYMPSQGRYKVYLIDEVHMLSK--------QSFNALLKTLEEPPEYVKFILATTDYH-----KIPVTILSRCIQLHL 175 (546)
T ss_pred HHHHhhhhcCCcEEEEEechhhccH--------HHHHHHHHHHhcCCCCceEEEEECChh-----hhhhhHHHheeeEEe
Confidence 55542 23456999999999854 577899999987 4788888888765 677889999999999
Q ss_pred cCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhh
Q psy2887 153 EEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 215 (899)
Q Consensus 153 ~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~ 215 (899)
..++.++...+++.++++ .++.+++.++..++..+++.++ +++.+++.+++..
T Consensus 176 ~~Ls~~eI~~~L~~il~~----egi~~e~~Al~~Ia~~s~GdlR------~alnlLek~i~~~ 228 (546)
T PRK14957 176 KHISQADIKDQLKIILAK----ENINSDEQSLEYIAYHAKGSLR------DALSLLDQAISFC 228 (546)
T ss_pred CCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHH------HHHHHHHHHHHhc
Confidence 999999999999988876 5688999999999999988665 8999999887654
No 207
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=2.6e-13 Score=154.55 Aligned_cols=173 Identities=21% Similarity=0.227 Sum_probs=129.1
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCc--------------cCCCeEEEEehhhhhcCcccCchHHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNS--------------LLSKKILLLDIALLLAGTKYRGEFEDRLKKI 76 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~--------------l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~ 76 (899)
+.+..+||+|||||||||+|+++|+.+.....+.. -....+++++... ..+ ...++++
T Consensus 36 ~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas------~~~--v~~iR~l 107 (509)
T PRK14958 36 YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAAS------RTK--VEDTREL 107 (509)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccc------cCC--HHHHHHH
Confidence 33334799999999999999999999854221100 0112355555321 112 2246677
Q ss_pred HHHHHh---cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhcccccc
Q psy2887 77 LKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKIL 151 (899)
Q Consensus 77 ~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~ 151 (899)
++.+.. .+...|+||||+|.|.. ++.|.|+..|+. ..+.+|++|+.+. .+.+.+++||..+.
T Consensus 108 ~~~~~~~p~~~~~kV~iIDE~~~ls~--------~a~naLLk~LEepp~~~~fIlattd~~-----kl~~tI~SRc~~~~ 174 (509)
T PRK14958 108 LDNIPYAPTKGRFKVYLIDEVHMLSG--------HSFNALLKTLEEPPSHVKFILATTDHH-----KLPVTVLSRCLQFH 174 (509)
T ss_pred HHHHhhccccCCcEEEEEEChHhcCH--------HHHHHHHHHHhccCCCeEEEEEECChH-----hchHHHHHHhhhhh
Confidence 666542 23356999999999964 567889999986 4788898888776 67788999999999
Q ss_pred ccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 152 VEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 152 l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
|..++.++...+++.++++ .++.++++++..+++.+++.+. ++.++++.+++.
T Consensus 175 f~~l~~~~i~~~l~~il~~----egi~~~~~al~~ia~~s~GslR------~al~lLdq~ia~ 227 (509)
T PRK14958 175 LAQLPPLQIAAHCQHLLKE----ENVEFENAALDLLARAANGSVR------DALSLLDQSIAY 227 (509)
T ss_pred cCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCcHH------HHHHHHHHHHhc
Confidence 9999999999999888876 5788999999999999987655 899999888765
No 208
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.49 E-value=1.1e-13 Score=130.37 Aligned_cols=116 Identities=29% Similarity=0.468 Sum_probs=88.2
Q ss_pred EEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCccccccc--chhhHHHHhCC-CEEEEEc
Q psy2887 421 FMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKP-YSLILLD 497 (899)
Q Consensus 421 ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~-~~vl~lD 497 (899)
+||+||||||||++|+.+|+.+ +.+++.++++++.+. +.+.... ..++..+.... ++|||||
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~~~~~------------~~~~~~~~i~~~~~~~~~~~~~~vl~iD 65 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGSELISS------------YAGDSEQKIRDFFKKAKKSAKPCVLFID 65 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETTHHHTS------------STTHHHHHHHHHHHHHHHTSTSEEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhc---ccccccccccccccc------------cccccccccccccccccccccceeeeec
Confidence 6899999999999999999999 889999999988643 2222222 33455555555 7999999
Q ss_pred cccccCHHH-----------HHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhh
Q psy2887 498 EIEKANSDV-----------FNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKI 566 (899)
Q Consensus 498 Eid~~~~~~-----------~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 566 (899)
|+|.+.+.. ++.|+..++...- ..+++++|+|||.. .
T Consensus 66 e~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~--------~~~~~~vI~ttn~~------------------------~ 113 (132)
T PF00004_consen 66 EIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSS--------KNSRVIVIATTNSP------------------------D 113 (132)
T ss_dssp TGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTT--------TSSSEEEEEEESSG------------------------G
T ss_pred cchhcccccccccccccccccceeeeccccccc--------ccccceeEEeeCCh------------------------h
Confidence 999988765 8899999987321 12468899999962 2
Q ss_pred cCChhHh-hccCeEEEec
Q psy2887 567 YFRPEFI-NRIDDIIVFR 583 (899)
Q Consensus 567 ~~~~~l~-~R~~~~i~f~ 583 (899)
.+.|.++ +||+..+.|+
T Consensus 114 ~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 114 KIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp GSCHHHHSTTSEEEEEE-
T ss_pred hCCHhHHhCCCcEEEEcC
Confidence 4778899 9999888875
No 209
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.49 E-value=2.9e-12 Score=149.82 Aligned_cols=198 Identities=19% Similarity=0.311 Sum_probs=129.1
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhcc-------CCCceEEecccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFN-------NEESIIRIDMSEFIEK 460 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~-------~~~~~~~~~~~~~~~~ 460 (899)
.+++||+.++..+...+... .+ .+++|+||||||||++|+++++.... .+.+|+.++|..+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~--------~~-~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d 224 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP--------FP-QHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWD 224 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC--------CC-CeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCC
Confidence 56889999999876665321 12 26999999999999999999987621 3467999998776311
Q ss_pred -cch-hhccCCCCC--cccccc-------cchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCC-----
Q psy2887 461 -HSI-SRLIGAPPG--YIGYEE-------GGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRG----- 524 (899)
Q Consensus 461 -~~~-~~l~g~~~~--~~g~~~-------~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g----- 524 (899)
... ..++|.... +.+... .......+....+++|||||++.+++..|+.|+.+|+++++....+
T Consensus 225 ~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~ 304 (615)
T TIGR02903 225 PREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPD 304 (615)
T ss_pred HHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccC
Confidence 001 123332110 000000 0001122334556899999999999999999999999886432111
Q ss_pred -ce-----------EecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHH
Q psy2887 525 -RT-----------INFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILS 592 (899)
Q Consensus 525 -~~-----------~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~ 592 (899)
.. ....++++|.+|+.... .+++.|.+|| ..+.|+|++.+++.+
T Consensus 305 ~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~-----------------------~l~~aLrSR~-~~i~~~pls~edi~~ 360 (615)
T TIGR02903 305 DPNVPKYIKKLFEEGAPADFVLIGATTRDPE-----------------------EINPALRSRC-AEVFFEPLTPEDIAL 360 (615)
T ss_pred CcccchhhhhhcccCccceEEEEEecccccc-----------------------ccCHHHHhce-eEEEeCCCCHHHHHH
Confidence 00 01123455555554322 2567799999 578999999999999
Q ss_pred HHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCc
Q psy2887 593 IANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDL 629 (899)
Q Consensus 593 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~ 629 (899)
|++..+.+ .+ +.+++++++.|.+ |.|
T Consensus 361 Il~~~a~~-------~~--v~ls~eal~~L~~--ys~ 386 (615)
T TIGR02903 361 IVLNAAEK-------IN--VHLAAGVEELIAR--YTI 386 (615)
T ss_pred HHHHHHHH-------cC--CCCCHHHHHHHHH--CCC
Confidence 99987643 23 4688999999988 544
No 210
>PRK08727 hypothetical protein; Validated
Probab=99.49 E-value=5.5e-13 Score=137.72 Aligned_cols=186 Identities=18% Similarity=0.204 Sum_probs=127.6
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhcc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 467 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (899)
+.++|.+.++..+..... + .....++|+||+|||||+|+.+++..+...+...+++++.++....
T Consensus 20 ~f~~~~~n~~~~~~~~~~----~-----~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~------ 84 (233)
T PRK08727 20 SYIAAPDGLLAQLQALAA----G-----QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRL------ 84 (233)
T ss_pred hccCCcHHHHHHHHHHHh----c-----cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhH------
Confidence 455666665554443221 1 1112599999999999999999999987777777777655432210
Q ss_pred CCCCCcccccccchhhHHHHhCCCEEEEEccccccC--HHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhh
Q psy2887 468 GAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKAN--SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKI 545 (899)
Q Consensus 468 g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~ 545 (899)
......+. ...+|+|||++.+. +..+..|+.+++... ..+..+|+|+|.++..+
T Consensus 85 ------------~~~~~~l~--~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~----------~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 85 ------------RDALEALE--GRSLVALDGLESIAGQREDEVALFDFHNRAR----------AAGITLLYTARQMPDGL 140 (233)
T ss_pred ------------HHHHHHHh--cCCEEEEeCcccccCChHHHHHHHHHHHHHH----------HcCCeEEEECCCChhhh
Confidence 01122222 33599999999885 445667777776521 12345899999877755
Q ss_pred hhhhcCcHHHHHHHHHHHHhhcCChhHhhcc--CeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHH
Q psy2887 546 KEMEKGDKEIIKLAVMNEVKIYFRPEFINRI--DDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKIS 623 (899)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~--~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~ 623 (899)
.. +.|+|.+|| ..++.|+|++.+++.+|++..... ++ +.++++++++|+
T Consensus 141 ~~--------------------~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~-------~~--l~l~~e~~~~La 191 (233)
T PRK08727 141 AL--------------------VLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQR-------RG--LALDEAAIDWLL 191 (233)
T ss_pred hh--------------------hhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHH
Confidence 33 568899996 369999999999999998875532 23 789999999999
Q ss_pred hcccCcccccccccccHHHHHHHH
Q psy2887 624 NIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 624 ~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
+. .-||+++....|+++.
T Consensus 192 ~~------~~rd~r~~l~~L~~l~ 209 (233)
T PRK08727 192 TH------GERELAGLVALLDRLD 209 (233)
T ss_pred Hh------CCCCHHHHHHHHHHHH
Confidence 83 3388888766666655
No 211
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.49 E-value=4.1e-13 Score=149.48 Aligned_cols=198 Identities=19% Similarity=0.319 Sum_probs=128.0
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhcc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 467 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (899)
.+++||+.+++.+...+...+ ..+.+||+||||+|||++|+++++.+......-. -.|..+.+... ...
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~--------~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~-~~c~~c~~c~~--~~~ 82 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR--------IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDG-EPCNECESCKE--INS 82 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-CCCCCCHHHHH--Hhc
Confidence 678899999999999887533 1236899999999999999999999853311100 01111000000 000
Q ss_pred CCCCC--------cccccccchhhHHHHhC----CCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEE
Q psy2887 468 GAPPG--------YIGYEEGGYLTEIVRRK----PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIV 535 (899)
Q Consensus 468 g~~~~--------~~g~~~~~~l~~~~~~~----~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI 535 (899)
|..+. ..+....+.+.+.+... ++.|++|||+|.+....++.|++.+++ ...++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~-----------~~~~~~lI 151 (355)
T TIGR02397 83 GSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEE-----------PPEHVVFI 151 (355)
T ss_pred CCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhC-----------CccceeEE
Confidence 11110 11111112344433332 346999999999999999999999986 34567788
Q ss_pred EecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeec
Q psy2887 536 MTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKIS 615 (899)
Q Consensus 536 ~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 615 (899)
++++... .+.+.+.+|+ ..+.|.|++.+++.+++...+. ..+ +.++
T Consensus 152 l~~~~~~------------------------~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~-------~~g--~~i~ 197 (355)
T TIGR02397 152 LATTEPH------------------------KIPATILSRC-QRFDFKRIPLEDIVERLKKILD-------KEG--IKIE 197 (355)
T ss_pred EEeCCHH------------------------HHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHH-------HcC--CCCC
Confidence 8876422 1334578999 7899999999999998877763 344 5788
Q ss_pred HHHHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 616 KAALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 616 ~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
+++++.|++.. -||+......++++.
T Consensus 198 ~~a~~~l~~~~------~g~~~~a~~~lekl~ 223 (355)
T TIGR02397 198 DEALELIARAA------DGSLRDALSLLDQLI 223 (355)
T ss_pred HHHHHHHHHHc------CCChHHHHHHHHHHH
Confidence 99999998732 355555544455544
No 212
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.7e-13 Score=152.33 Aligned_cols=164 Identities=24% Similarity=0.354 Sum_probs=123.6
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCC----CCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccch
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSD----AKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSI 463 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~----~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~ 463 (899)
.++.|.+++++.+.+.+.-.+..-+. .+-|. .++|+||||||||.|||++|.+. +.||+.+.+|++...
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPk-GvlLvGpPGTGKTLLAkAvAgEA---~VPFf~iSGS~FVem--- 222 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPK-GVLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSDFVEM--- 222 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhccccccc-ceeEecCCCCCcHHHHHHHhccc---CCCceeccchhhhhh---
Confidence 56779999999998888654421100 12233 59999999999999999999998 999999999999775
Q ss_pred hhccCCCCCcccccccchhhHHHHhCCCEEEEEccccccCH--------------HHHHHHHHhhcCCceecCCCceEec
Q psy2887 464 SRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANS--------------DVFNILLQILDDGRLTDNRGRTINF 529 (899)
Q Consensus 464 ~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~--------------~~~~~Ll~~le~g~~~~~~g~~~~~ 529 (899)
++ -+|.+..|.++...++..+||+||||||.... ...|.||..||.-. ..
T Consensus 223 --fV-----GvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~---------~~ 286 (596)
T COG0465 223 --FV-----GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG---------GN 286 (596)
T ss_pred --hc-----CCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC---------CC
Confidence 11 23444457889888888889999999996653 36888888888511 12
Q ss_pred CCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHh--hccCeEEEecCCCHHHHHHHHHHHH
Q psy2887 530 RNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQL 598 (899)
Q Consensus 530 ~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~~~~~~i~~~~l 598 (899)
..+++|++||.+. .++|.|+ +|||..|.+..++-...++|++-++
T Consensus 287 ~gviviaaTNRpd------------------------VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~ 333 (596)
T COG0465 287 EGVIVIAATNRPD------------------------VLDPALLRPGRFDRQILVELPDIKGREQILKVHA 333 (596)
T ss_pred CceEEEecCCCcc------------------------cchHhhcCCCCcceeeecCCcchhhHHHHHHHHh
Confidence 4567777888642 2445565 8999999999999999999987555
No 213
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=1.4e-12 Score=149.21 Aligned_cols=174 Identities=21% Similarity=0.238 Sum_probs=129.0
Q ss_pred CCCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCcc--------------CCCeEEEEehhhhhcCcccCchHHHHHHH
Q psy2887 10 FYFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSL--------------LSKKILLLDIALLLAGTKYRGEFEDRLKK 75 (899)
Q Consensus 10 ~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l--------------~~~~~~~~~~~~l~~~~~~~g~~~~~l~~ 75 (899)
.+....+||+||+||||||+|+++|+.+.....+... ....+++++.. ...| ...+++
T Consensus 35 ~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaA------s~~g--Vd~IRe 106 (709)
T PRK08691 35 GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAA------SNTG--IDNIRE 106 (709)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEecc------ccCC--HHHHHH
Confidence 3445568999999999999999999987532211000 01123333321 1112 235677
Q ss_pred HHHHHHh---cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhccccc
Q psy2887 76 ILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKI 150 (899)
Q Consensus 76 ~~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i 150 (899)
+++.+.. .+...|+||||+|.|.. .+.+.|+..|+. +.+.+|++|+... .+.+.+++||..+
T Consensus 107 lle~a~~~P~~gk~KVIIIDEad~Ls~--------~A~NALLKtLEEPp~~v~fILaTtd~~-----kL~~TIrSRC~~f 173 (709)
T PRK08691 107 VLENAQYAPTAGKYKVYIIDEVHMLSK--------SAFNAMLKTLEEPPEHVKFILATTDPH-----KVPVTVLSRCLQF 173 (709)
T ss_pred HHHHHHhhhhhCCcEEEEEECccccCH--------HHHHHHHHHHHhCCCCcEEEEEeCCcc-----ccchHHHHHHhhh
Confidence 7765431 23456999999998853 567789999974 5788898888877 7888999999889
Q ss_pred cccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 151 LVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 151 ~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
.|..++.++...+|+.+++. .++.++++++..+++.+.+.+. +++.+++.++..
T Consensus 174 ~f~~Ls~eeI~~~L~~Il~k----Egi~id~eAL~~Ia~~A~GslR------dAlnLLDqaia~ 227 (709)
T PRK08691 174 VLRNMTAQQVADHLAHVLDS----EKIAYEPPALQLLGRAAAGSMR------DALSLLDQAIAL 227 (709)
T ss_pred hcCCCCHHHHHHHHHHHHHH----cCCCcCHHHHHHHHHHhCCCHH------HHHHHHHHHHHh
Confidence 99999999999999988876 6788999999999999988765 899999988765
No 214
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.48 E-value=3.6e-11 Score=141.47 Aligned_cols=149 Identities=26% Similarity=0.374 Sum_probs=109.4
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCC----CCCcccccccchhhHHHHhCCCEEEE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGA----PPGYIGYEEGGYLTEIVRRKPYSLIL 495 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~----~~~~~g~~~~~~l~~~~~~~~~~vl~ 495 (899)
++|+.||+.+|||++...+|+.. +-+|+++|-.+..+ ...++|. ..|.....+ +.+.+++++.- .|+
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~t---ghkfVRINNHEHTd---lqeYiGTyvTdd~G~lsFkE-GvLVeAlR~Gy--WIV 960 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARET---GHKFVRINNHEHTD---LQEYIGTYVTDDDGSLSFKE-GVLVEALRRGY--WIV 960 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHh---CccEEEecCcccch---HHHHhhceeecCCCceeeeh-hHHHHHHhcCc--EEE
Confidence 69999999999999999999999 89999999887654 3445554 222222222 45777777654 999
Q ss_pred EccccccCHHHHHHHHHhhcCC-ceecCCCc--eEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhH
Q psy2887 496 LDEIEKANSDVFNILLQILDDG-RLTDNRGR--TINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEF 572 (899)
Q Consensus 496 lDEid~~~~~~~~~Ll~~le~g-~~~~~~g~--~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 572 (899)
+||..-++.+++.+|.+++++. .+..+... .++..+..+.+|-| ++..... ++.++.+|
T Consensus 961 LDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQN-ppg~YgG-----------------RK~LSrAF 1022 (4600)
T COG5271 961 LDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQN-PPGGYGG-----------------RKGLSRAF 1022 (4600)
T ss_pred eeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecC-CCccccc-----------------hHHHHHHH
Confidence 9999999999999999999864 45544433 23444444444444 4432222 56677889
Q ss_pred hhccCeEEEecCCCHHHHHHHHHH
Q psy2887 573 INRIDDIIVFRYLNRKNILSIANI 596 (899)
Q Consensus 573 ~~R~~~~i~f~~l~~~~~~~i~~~ 596 (899)
.+|| .-+.|....++++..|++.
T Consensus 1023 RNRF-lE~hFddipedEle~ILh~ 1045 (4600)
T COG5271 1023 RNRF-LEMHFDDIPEDELEEILHG 1045 (4600)
T ss_pred Hhhh-HhhhcccCcHHHHHHHHhc
Confidence 9999 8899999999999999873
No 215
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.48 E-value=6.8e-13 Score=137.24 Aligned_cols=165 Identities=11% Similarity=0.104 Sum_probs=114.2
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEEc
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFID 92 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~iD 92 (899)
.++++|+||||||||+|++++++.+... +..+..+....... ...++++...+. .+|+||
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~-------~~~v~y~~~~~~~~----------~~~~~~~~~~~~---dlliiD 104 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQR-------GRAVGYVPLDKRAW----------FVPEVLEGMEQL---SLVCID 104 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEEHHHHhh----------hhHHHHHHhhhC---CEEEEe
Confidence 4589999999999999999999987542 45566665544321 112233333222 389999
Q ss_pred cccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhccc---cccccCCCHHHHHHHHHhhhh
Q psy2887 93 ELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQ---KILVEEPDIEETISILRGLQK 169 (899)
Q Consensus 93 Ei~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~---~i~l~~p~~~e~~~il~~~~~ 169 (899)
|++.+..+. .......+.+....+.++..+|+|++.+.. ..-.+.|.|++||. .+.+.+|+.+++.++++....
T Consensus 105 di~~~~~~~--~~~~~lf~l~n~~~e~g~~~li~ts~~~p~-~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~ 181 (235)
T PRK08084 105 NIECIAGDE--LWEMAIFDLYNRILESGRTRLLITGDRPPR-QLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRAR 181 (235)
T ss_pred ChhhhcCCH--HHHHHHHHHHHHHHHcCCCeEEEeCCCChH-HcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHH
Confidence 999986432 122345566677777777666666654431 22235799999994 699999999999999987555
Q ss_pred hhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHH
Q psy2887 170 KYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDE 210 (899)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~ 210 (899)
. +++.++++++.++++.+.+.+. .+..+++.
T Consensus 182 ~----~~~~l~~~v~~~L~~~~~~d~r------~l~~~l~~ 212 (235)
T PRK08084 182 L----RGFELPEDVGRFLLKRLDREMR------TLFMTLDQ 212 (235)
T ss_pred H----cCCCCCHHHHHHHHHhhcCCHH------HHHHHHHH
Confidence 4 4789999999999999988655 45554444
No 216
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=99.48 E-value=1.1e-13 Score=145.40 Aligned_cols=148 Identities=21% Similarity=0.340 Sum_probs=107.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCcccccccccccHHHHHHHHHHhhccCCccceeecc
Q psy2887 584 YLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLG 663 (899)
Q Consensus 584 ~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~G 663 (899)
.++.+++.+++.....-+ ..+..-+.+ -.+.+.+|||||++..|.++++++++. +.++++|+|
T Consensus 24 ~i~~~~i~~l~~~~~~il----~~e~~ll~i------------~~p~~ViGDIHG~~~~L~~l~~~~~~~-~~~~~lfLG 86 (294)
T PTZ00244 24 LIREEDIRAVLTEVREIF----MSQPMLLEI------------RPPVRVCGDTHGQYYDLLRIFEKCGFP-PYSNYLFLG 86 (294)
T ss_pred CCCHHHHHHHHHHHHHHH----HhCCCeEec------------cCCceeeccCCCCHHHHHHHHHHcCCC-CcccEEEee
Confidence 457788888776555332 223221222 135678999999999999999998874 457899999
Q ss_pred ccCCCCceEehhHHHHHhc----CCccEEEccCChHhHHhHhhhcccCchhchHHHhhCCcChHHHHHHHhcCCceEEe-
Q psy2887 664 DLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIYY- 738 (899)
Q Consensus 664 D~~d~g~~~~~~~~~l~~~----~~~~~~v~GNHe~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~- 738 (899)
|++|||+.+.+|+.+++.+ ..++.+++||||.+.+....+... +....+ .......+.+|++.+|++...
T Consensus 87 DyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~----e~~~~y-~~~l~~~~~~~f~~lPlaaii~ 161 (294)
T PTZ00244 87 DYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECASINKMYGFFD----DVKRRY-NIKLFKAFTDVFNTMPVCCVIS 161 (294)
T ss_pred eEecCCCCHHHHHHHHHHHhhccCCeEEEEecccchHhHhhccChHH----HHHHHh-hHHHHHHHHHHHHhCchheEec
Confidence 9999999999999988754 457899999999988765433211 111111 223356789999999999766
Q ss_pred CCEEEEecccccccc
Q psy2887 739 KKYLMIHAGVAKQWT 753 (899)
Q Consensus 739 ~~~~~vHAg~~~~~~ 753 (899)
+++++||||++|.|.
T Consensus 162 ~~il~vHgGi~p~~~ 176 (294)
T PTZ00244 162 EKIICMHGGLSPDLT 176 (294)
T ss_pred CeeEEEcCCCCchhh
Confidence 579999999999765
No 217
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1.2e-12 Score=149.13 Aligned_cols=171 Identities=20% Similarity=0.232 Sum_probs=123.9
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCc--------------cCCCeEEEEehhhhhcCcccCchHHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNS--------------LLSKKILLLDIALLLAGTKYRGEFEDRLKKI 76 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~--------------l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~ 76 (899)
+-..++||+|||||||||+|+.+|+.+.....+.. -....+++++.. ...+ ...++.+
T Consensus 36 ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a------~~~~--Id~iR~L 107 (624)
T PRK14959 36 RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGA------SNRG--IDDAKRL 107 (624)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEecc------cccC--HHHHHHH
Confidence 44568899999999999999999999853211100 011224444321 1111 1234443
Q ss_pred HHHHH---hcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhcccccc
Q psy2887 77 LKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKIL 151 (899)
Q Consensus 77 ~~~~~---~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~ 151 (899)
.+.+. ......|+||||+|.|.. ...+.|+..|+. +.+++|++|+... .+.+.+++||..+.
T Consensus 108 ~~~~~~~p~~g~~kVIIIDEad~Lt~--------~a~naLLk~LEEP~~~~ifILaTt~~~-----kll~TI~SRcq~i~ 174 (624)
T PRK14959 108 KEAIGYAPMEGRYKVFIIDEAHMLTR--------EAFNALLKTLEEPPARVTFVLATTEPH-----KFPVTIVSRCQHFT 174 (624)
T ss_pred HHHHHhhhhcCCceEEEEEChHhCCH--------HHHHHHHHHhhccCCCEEEEEecCChh-----hhhHHHHhhhhccc
Confidence 33332 223456999999999953 567889999975 5788888888776 67788999999999
Q ss_pred ccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHH
Q psy2887 152 VEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAA 212 (899)
Q Consensus 152 l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~ 212 (899)
|+.++.++...+|+.++.. .++.++++++..+++++.+.+. +++.+++.++
T Consensus 175 F~pLs~~eL~~~L~~il~~----egi~id~eal~lIA~~s~GdlR------~Al~lLeqll 225 (624)
T PRK14959 175 FTRLSEAGLEAHLTKVLGR----EGVDYDPAAVRLIARRAAGSVR------DSMSLLGQVL 225 (624)
T ss_pred cCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHH------HHHHHHHHHH
Confidence 9999999999999887765 5678999999999999987665 8888888764
No 218
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=4.5e-13 Score=155.74 Aligned_cols=183 Identities=19% Similarity=0.283 Sum_probs=122.1
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCce----EEecccc---cccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI----IRIDMSE---FIEK 460 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~----~~~~~~~---~~~~ 460 (899)
.+++||+.++..|..++...+. ..++||+||+|||||++|+++|+.++.....- -+..|.. +...
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl--------~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g 87 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRI--------APAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAG 87 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCC--------CceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcC
Confidence 5788999999999999886432 12699999999999999999999995421100 0001111 0000
Q ss_pred cchhhccCCCC-CcccccccchhhHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEE
Q psy2887 461 HSISRLIGAPP-GYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIV 535 (899)
Q Consensus 461 ~~~~~l~g~~~-~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI 535 (899)
... .++.... ..++.+..+.+.+.+.. +.+.|+||||+|.+....++.|++.||+ ....++||
T Consensus 88 ~h~-D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEe-----------Pp~~tvfI 155 (620)
T PRK14948 88 NAL-DVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEE-----------PPPRVVFV 155 (620)
T ss_pred CCc-cEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhc-----------CCcCeEEE
Confidence 000 0000000 11222223344444432 3457999999999999999999999997 45678888
Q ss_pred EecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeec
Q psy2887 536 MTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKIS 615 (899)
Q Consensus 536 ~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 615 (899)
++|+... .+.+.+.+|| ..+.|.+++.+++...+...+. ..+ +.++
T Consensus 156 L~t~~~~------------------------~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~-------keg--i~is 201 (620)
T PRK14948 156 LATTDPQ------------------------RVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAE-------KES--IEIE 201 (620)
T ss_pred EEeCChh------------------------hhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHH-------HhC--CCCC
Confidence 8887422 2455689999 8999999999888877655542 234 5688
Q ss_pred HHHHHHHHh
Q psy2887 616 KAALKKISN 624 (899)
Q Consensus 616 ~~~~~~L~~ 624 (899)
++++..+++
T Consensus 202 ~~al~~La~ 210 (620)
T PRK14948 202 PEALTLVAQ 210 (620)
T ss_pred HHHHHHHHH
Confidence 999999887
No 219
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.48 E-value=7.1e-14 Score=136.73 Aligned_cols=181 Identities=22% Similarity=0.271 Sum_probs=81.8
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchh---
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS--- 464 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~--- 464 (899)
.+|+||+.+++.+.-+..-. +++||+||||||||++|+.++..|..-. .-..-+...-.++.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~-----------h~lLl~GppGtGKTmlA~~l~~lLP~l~----~~e~le~~~i~s~~~~~ 67 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG-----------HHLLLIGPPGTGKTMLARRLPSLLPPLT----EEEALEVSKIYSVAGLG 67 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC-------------EEEES-CCCTHHHHHHHHHHCS--CC----EECCESS--S-TT---S
T ss_pred hhhcCcHHHHHHHHHHHcCC-----------CCeEEECCCCCCHHHHHHHHHHhCCCCc----hHHHhhhccccccccCC
Confidence 57899999999998877632 2799999999999999999998882111 10111111000000
Q ss_pred ---hccCCCC-----------CcccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCC-C-ceEe
Q psy2887 465 ---RLIGAPP-----------GYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNR-G-RTIN 528 (899)
Q Consensus 465 ---~l~g~~~-----------~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~-g-~~~~ 528 (899)
.++...| +.+|... ...-..+..+..+||||||+-.+.+.+++.|++.|++|.++... | ....
T Consensus 68 ~~~~~~~~~Pfr~phhs~s~~~liGgg~-~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~ 146 (206)
T PF01078_consen 68 PDEGLIRQRPFRAPHHSASEAALIGGGR-PPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTY 146 (206)
T ss_dssp ---EEEE---EEEE-TT--HHHHHEEGG-GEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEE
T ss_pred CCCceecCCCcccCCCCcCHHHHhCCCc-CCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEE
Confidence 0111110 0011100 01123345667799999999999999999999999999876433 3 3345
Q ss_pred cCCeEEEEecCCChhhhhhh----hcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHH
Q psy2887 529 FRNTIIVMTSNLGSDKIKEM----EKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKN 589 (899)
Q Consensus 529 ~~~~~iI~tsn~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~ 589 (899)
..+..+|+|+|.-+-..... +.-+..++. ...++++..|++|||..+.+++++.++
T Consensus 147 Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~-----~Y~~rlsgpllDRiDi~v~~~~~~~~~ 206 (206)
T PF01078_consen 147 PARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIR-----RYQSRLSGPLLDRIDIHVEVPRVSYEE 206 (206)
T ss_dssp B--EEEEEEE-S-----------------------------------------------------
T ss_pred ecccEEEEEeccccccccccccccccccccccc-----cccccccccccccccccccccccccCC
Confidence 57888999999644321110 100122222 235677888999999999999887654
No 220
>KOG0742|consensus
Probab=99.47 E-value=4.9e-11 Score=123.90 Aligned_cols=141 Identities=20% Similarity=0.336 Sum_probs=100.1
Q ss_pred CCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCE-E
Q psy2887 415 KRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYS-L 493 (899)
Q Consensus 415 ~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~-v 493 (899)
..|..+||||||||||||++|+.||... |..+....+.++.. .|.-+.+..-++|+..+.+..+ +
T Consensus 381 ~apfRNilfyGPPGTGKTm~ArelAr~S---GlDYA~mTGGDVAP-----------lG~qaVTkiH~lFDWakkS~rGLl 446 (630)
T KOG0742|consen 381 QAPFRNILFYGPPGTGKTMFARELARHS---GLDYAIMTGGDVAP-----------LGAQAVTKIHKLFDWAKKSRRGLL 446 (630)
T ss_pred cchhhheeeeCCCCCCchHHHHHHHhhc---CCceehhcCCCccc-----------cchHHHHHHHHHHHHHhhcccceE
Confidence 4566799999999999999999999987 66555444444322 1222233335678888877766 8
Q ss_pred EEEccccccC---------HHHHHHHHHhh-cCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHH
Q psy2887 494 ILLDEIEKAN---------SDVFNILLQIL-DDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNE 563 (899)
Q Consensus 494 l~lDEid~~~---------~~~~~~Ll~~l-e~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~ 563 (899)
|||||+|.+- ...-.+|..+| ..|. ...+.+++++||.+.+
T Consensus 447 lFIDEADAFLceRnktymSEaqRsaLNAlLfRTGd---------qSrdivLvlAtNrpgd-------------------- 497 (630)
T KOG0742|consen 447 LFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD---------QSRDIVLVLATNRPGD-------------------- 497 (630)
T ss_pred EEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcc---------cccceEEEeccCCccc--------------------
Confidence 9999998443 33333333332 1221 2366778999997655
Q ss_pred HhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHH
Q psy2887 564 VKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILK 602 (899)
Q Consensus 564 l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~ 602 (899)
|+...-+|||.+|.|+-+.+++..+++..+|+++.
T Consensus 498 ----lDsAV~DRide~veFpLPGeEERfkll~lYlnkyi 532 (630)
T KOG0742|consen 498 ----LDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYI 532 (630)
T ss_pred ----hhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHh
Confidence 56667899999999999999999999999997754
No 221
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=99.47 E-value=2.3e-13 Score=144.59 Aligned_cols=147 Identities=20% Similarity=0.310 Sum_probs=105.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCcccccccccccHHHHHHHHHHhhccCCccceeeccc
Q psy2887 585 LNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGD 664 (899)
Q Consensus 585 l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD 664 (899)
++.+++.+++....+-+ ..+..-+.++ .+.+.+|||||++..|.++++..++ ++.++++|+||
T Consensus 16 l~~~~i~~l~~~~~~il----~~e~~l~~i~------------~~i~ViGDIHG~~~dL~~l~~~~g~-~~~~~ylFLGD 78 (305)
T cd07416 16 LSEEDALRIITEGAEIL----RQEPNLLRIE------------APVTVCGDIHGQFYDLLKLFEVGGS-PANTRYLFLGD 78 (305)
T ss_pred CCHHHHHHHHHHHHHHH----HhCCCeEccC------------CCEEEEEeCCCCHHHHHHHHHhcCC-CCCceEEEECC
Confidence 56777777765544333 2232212221 3557799999999999999987765 45689999999
Q ss_pred cCCCCceEehhHHHHHhc----CCccEEEccCChHhHHhHhhhcccCchhchHHHhhCCcChHHHHHHHhcCCceEEe-C
Q psy2887 665 LINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIYY-K 739 (899)
Q Consensus 665 ~~d~g~~~~~~~~~l~~~----~~~~~~v~GNHe~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~-~ 739 (899)
+||||+.+++|+.+++.+ ..++.++|||||.+.+....+... +....+ .......+.+|+..||+...+ +
T Consensus 79 yVDRG~~s~Evi~lL~~lki~~p~~v~lLRGNHE~~~l~~~~gf~~----e~~~~y-~~~l~~~~~~~f~~LPlaaii~~ 153 (305)
T cd07416 79 YVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQ----ECKIKY-SERVYDACMEAFDCLPLAALMNQ 153 (305)
T ss_pred ccCCCCChHHHHHHHHHHHhhcCCCEEEEeCCCcHHHHHHhhCchh----HHHHhc-cHHHHHHHHHHHhhccceeEEcC
Confidence 999999999999999887 347899999999987765444321 111111 122346788999999998654 5
Q ss_pred CEEEEecccccccc
Q psy2887 740 KYLMIHAGVAKQWT 753 (899)
Q Consensus 740 ~~~~vHAg~~~~~~ 753 (899)
++++||||++|.+.
T Consensus 154 ~i~~vHGGi~p~~~ 167 (305)
T cd07416 154 QFLCVHGGLSPELK 167 (305)
T ss_pred CEEEEcCCCCcccc
Confidence 79999999999754
No 222
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1e-12 Score=146.28 Aligned_cols=194 Identities=22% Similarity=0.293 Sum_probs=129.9
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhcc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 467 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (899)
.+++||+.+++.+...+.... ..+++||+||||+|||++|+++++.+...+.. ..+..+ ....+.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~--------~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~---~~~~~~----~~~~~~ 81 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH--------LAQALLFCGPRGVGKTTCARILARKINQPGYD---DPNEDF----SFNIFE 81 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC---CCCCCC----CcceEE
Confidence 677899999999999987532 12379999999999999999999998542110 000000 000000
Q ss_pred CCCCCcccccccchhhHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChh
Q psy2887 468 GAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSD 543 (899)
Q Consensus 468 g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~ 543 (899)
.......+.+..+.+.+.+.. +++.||+|||++.+....++.|+..+++ +...+++|++++..
T Consensus 82 l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~-----------~~~~~~~Il~~~~~-- 148 (367)
T PRK14970 82 LDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEE-----------PPAHAIFILATTEK-- 148 (367)
T ss_pred eccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhC-----------CCCceEEEEEeCCc--
Confidence 000001111111223332222 2357999999999999999999999986 23567788877632
Q ss_pred hhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHH
Q psy2887 544 KIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKIS 623 (899)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~ 623 (899)
..+.+.+.+|+ .++.|.+++.+++..++...+. .++ +.++++++++|+
T Consensus 149 ----------------------~kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~-------~~g--~~i~~~al~~l~ 196 (367)
T PRK14970 149 ----------------------HKIIPTILSRC-QIFDFKRITIKDIKEHLAGIAV-------KEG--IKFEDDALHIIA 196 (367)
T ss_pred ----------------------ccCCHHHHhcc-eeEecCCccHHHHHHHHHHHHH-------HcC--CCCCHHHHHHHH
Confidence 23556788999 7899999999999988776663 345 678999999999
Q ss_pred hcccCcccccccccccHHHHHHHH
Q psy2887 624 NIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 624 ~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
.. .-+|+......++++.
T Consensus 197 ~~------~~gdlr~~~~~lekl~ 214 (367)
T PRK14970 197 QK------ADGALRDALSIFDRVV 214 (367)
T ss_pred Hh------CCCCHHHHHHHHHHHH
Confidence 82 2367777766677665
No 223
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=6.1e-13 Score=154.70 Aligned_cols=199 Identities=22% Similarity=0.323 Sum_probs=131.3
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCc---eEEecc---ccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES---IIRIDM---SEFIEKH 461 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~---~~~~~~---~~~~~~~ 461 (899)
.+|+||+.+++.|..++...+. .+.+||+||+|+|||++|+++|+.+...... ..+-.| ..+....
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l--------~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~ 88 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKL--------AHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQR 88 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--------CeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCC
Confidence 6788999999999999875432 2258999999999999999999998422100 000011 1111100
Q ss_pred c--hhhccCCCCCcccccccchhhHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEE
Q psy2887 462 S--ISRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIV 535 (899)
Q Consensus 462 ~--~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI 535 (899)
. ...+-+. +..+.+..+.+...+.. +.+.|++|||++.+....++.|+..||+ ....++||
T Consensus 89 ~~n~~~ld~~--~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEe-----------pp~~tifI 155 (614)
T PRK14971 89 SYNIHELDAA--SNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEE-----------PPSYAIFI 155 (614)
T ss_pred CCceEEeccc--ccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhC-----------CCCCeEEE
Confidence 0 0011111 11111122222222232 2357999999999999999999999998 45678888
Q ss_pred EecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeec
Q psy2887 536 MTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKIS 615 (899)
Q Consensus 536 ~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 615 (899)
++|+.. ..+.+.+.+|| .++.|.+++.+++...+...+. .++ +.++
T Consensus 156 L~tt~~------------------------~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~-------~eg--i~i~ 201 (614)
T PRK14971 156 LATTEK------------------------HKILPTILSRC-QIFDFNRIQVADIVNHLQYVAS-------KEG--ITAE 201 (614)
T ss_pred EEeCCc------------------------hhchHHHHhhh-heeecCCCCHHHHHHHHHHHHH-------HcC--CCCC
Confidence 888732 23556789999 8999999999999988776653 345 6788
Q ss_pred HHHHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 616 KAALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 616 ~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
++++++|+... -||+......|+++.
T Consensus 202 ~~al~~La~~s------~gdlr~al~~Lekl~ 227 (614)
T PRK14971 202 PEALNVIAQKA------DGGMRDALSIFDQVV 227 (614)
T ss_pred HHHHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 99999998732 355555544455544
No 224
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=99.47 E-value=2.3e-13 Score=143.49 Aligned_cols=148 Identities=20% Similarity=0.332 Sum_probs=106.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCcccccccccccHHHHHHHHHHhhccCCccceeecc
Q psy2887 584 YLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLG 663 (899)
Q Consensus 584 ~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~G 663 (899)
.++.+++.++++....-+ ..+..-+.+ -.+.+.+|||||++..|.++++..++ .+.++++|+|
T Consensus 15 ~l~~~~i~~l~~~~~~il----~~e~~~~~i------------~~~i~vvGDIHG~~~~L~~l~~~~~~-~~~~~~lfLG 77 (303)
T PTZ00239 15 CLPERDLKLICERAKEIF----LEESNVQPV------------RAPVNVCGDIHGQFYDLQALFKEGGD-IPNANYIFIG 77 (303)
T ss_pred CCCHHHHHHHHHHHHHHH----HhCCCeEec------------CCCEEEEEeCCCCHHHHHHHHHhcCC-CCCceEEEee
Confidence 457778877766554333 223211222 13457799999999999999988775 3568899999
Q ss_pred ccCCCCceEehhHHHHHhc----CCccEEEccCChHhHHhHhhhcccCchhchHHHhhCCcChHHHHHHHhcCCceEEe-
Q psy2887 664 DLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIYY- 738 (899)
Q Consensus 664 D~~d~g~~~~~~~~~l~~~----~~~~~~v~GNHe~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~- 738 (899)
|+||||+.+.+++.+++++ ..++.+++||||.+.+....+.. .+....+........+.+|+..||++..+
T Consensus 78 DyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~----~e~~~ky~~~~~~~~~~~~f~~LPlaaii~ 153 (303)
T PTZ00239 78 DFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESRQCTQVYGFY----EEILRKYGNSNPWRLFMDVFDCLPLAALIE 153 (303)
T ss_pred eEcCCCCCHHHHHHHHHHhhhcCCCcEEEEecccchHHHhhhcChH----HHHHHHhcChhHHHHHHHHHHhCchheEEc
Confidence 9999999999999999876 34789999999998877544321 12223332222346678999999999654
Q ss_pred CCEEEEeccccccc
Q psy2887 739 KKYLMIHAGVAKQW 752 (899)
Q Consensus 739 ~~~~~vHAg~~~~~ 752 (899)
+++++||||++|..
T Consensus 154 ~~i~cvHgGi~p~~ 167 (303)
T PTZ00239 154 GQILCVHGGLSPDM 167 (303)
T ss_pred CeEEEEcCccCccc
Confidence 56999999999864
No 225
>KOG0991|consensus
Probab=99.46 E-value=1.7e-13 Score=131.78 Aligned_cols=190 Identities=15% Similarity=0.230 Sum_probs=134.0
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCC--CceEEecccccccccchhh
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNE--ESIIRIDMSEFIEKHSISR 465 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~--~~~~~~~~~~~~~~~~~~~ 465 (899)
.+++|.++.++.+.-..+... - ++++|.|||||||||.+.++|+.|.+.. ..+..+|.|+-..-+.+.
T Consensus 27 ~dIVGNe~tv~rl~via~~gn-------m--P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVR- 96 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGN-------M--PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVR- 96 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCC-------C--CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHH-
Confidence 678899999999988776533 2 3699999999999999999999997743 334455544422211111
Q ss_pred ccCCCCCcccccccchhhHHHH------hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecC
Q psy2887 466 LIGAPPGYIGYEEGGYLTEIVR------RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSN 539 (899)
Q Consensus 466 l~g~~~~~~g~~~~~~l~~~~~------~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn 539 (899)
..+..++. ...+.|+++||+|++....|.+|...||- ..+.+.|++++|
T Consensus 97 --------------n~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEi-----------yS~ttRFalaCN 151 (333)
T KOG0991|consen 97 --------------NKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEI-----------YSNTTRFALACN 151 (333)
T ss_pred --------------HHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHH-----------Hcccchhhhhhc
Confidence 11222222 13356999999999999999999999984 457788999999
Q ss_pred CChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHH
Q psy2887 540 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAAL 619 (899)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~ 619 (899)
.... +-.++.+|| .++.|..++..++..-+ .+..+.++ +.++++.+
T Consensus 152 ~s~K------------------------IiEPIQSRC-AiLRysklsd~qiL~Rl-------~~v~k~Ek--v~yt~dgL 197 (333)
T KOG0991|consen 152 QSEK------------------------IIEPIQSRC-AILRYSKLSDQQILKRL-------LEVAKAEK--VNYTDDGL 197 (333)
T ss_pred chhh------------------------hhhhHHhhh-HhhhhcccCHHHHHHHH-------HHHHHHhC--CCCCcchH
Confidence 6444 333488999 89999999988765433 33333344 77888888
Q ss_pred HHHHhcccCcccccccccccHHHHHHHHHHhhc
Q psy2887 620 KKISNIGFDLIYGARDVHGCKKSLSILLKKIHK 652 (899)
Q Consensus 620 ~~L~~~~~~~~~~~~di~~~~~~l~~~l~~~~~ 652 (899)
+.+.- .+-||.+..+.-|+..+.-.++
T Consensus 198 eaiif------ta~GDMRQalNnLQst~~g~g~ 224 (333)
T KOG0991|consen 198 EAIIF------TAQGDMRQALNNLQSTVNGFGL 224 (333)
T ss_pred HHhhh------hccchHHHHHHHHHHHhccccc
Confidence 88875 3358888887777777744444
No 226
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=2.3e-12 Score=148.18 Aligned_cols=171 Identities=21% Similarity=0.209 Sum_probs=126.2
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCC--Ccc-----------------CCCeEEEEehhhhhcCcccCchHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVP--NSL-----------------LSKKILLLDIALLLAGTKYRGEFEDRL 73 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p--~~l-----------------~~~~~~~~~~~~l~~~~~~~g~~~~~l 73 (899)
..-+||+||+||||||+|+++|+.+...... ... ....+++++.. +..| ...+
T Consensus 38 ~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaa------s~~~--Vd~i 109 (618)
T PRK14951 38 HHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAA------SNRG--VDEV 109 (618)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCcc------cccC--HHHH
Confidence 3345999999999999999999998542100 000 01123333321 1112 2346
Q ss_pred HHHHHHHHhc---CCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhccc
Q psy2887 74 KKILKEISNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQ 148 (899)
Q Consensus 74 ~~~~~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~ 148 (899)
+++++.+... +...|++|||+|.|.. ...|.|+..++. +.+.+|++|+.+. .+.+.+++||.
T Consensus 110 Reli~~~~~~p~~g~~KV~IIDEvh~Ls~--------~a~NaLLKtLEEPP~~~~fIL~Ttd~~-----kil~TIlSRc~ 176 (618)
T PRK14951 110 QQLLEQAVYKPVQGRFKVFMIDEVHMLTN--------TAFNAMLKTLEEPPEYLKFVLATTDPQ-----KVPVTVLSRCL 176 (618)
T ss_pred HHHHHHHHhCcccCCceEEEEEChhhCCH--------HHHHHHHHhcccCCCCeEEEEEECCch-----hhhHHHHHhce
Confidence 7777665421 2346999999999964 567889999986 5688888888776 67788999999
Q ss_pred cccccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 149 KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 149 ~i~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
.+.|..++.++..++++.++.+ .++.++++++..+++.+++.+. +++++++++...
T Consensus 177 ~~~f~~Ls~eei~~~L~~i~~~----egi~ie~~AL~~La~~s~GslR------~al~lLdq~ia~ 232 (618)
T PRK14951 177 QFNLRPMAPETVLEHLTQVLAA----ENVPAEPQALRLLARAARGSMR------DALSLTDQAIAF 232 (618)
T ss_pred eeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHH------HHHHHHHHHHHh
Confidence 9999999999999999988775 5788999999999999988766 888888887765
No 227
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=2.7e-12 Score=147.34 Aligned_cols=170 Identities=19% Similarity=0.205 Sum_probs=126.5
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHcCCC----CCc----------cCCCeEEEEehhhhhcCcccCchHHHHHHHHHHH
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRIINGEV----PNS----------LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKE 79 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l~~~~~----p~~----------l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~ 79 (899)
..+||+||||+||||+|+.+|+.+..... |.. -....++.++.. ... ....++++++.
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~------~~~--~vd~ir~l~~~ 110 (527)
T PRK14969 39 HAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAA------SNT--QVDAMRELLDN 110 (527)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeecc------ccC--CHHHHHHHHHH
Confidence 34689999999999999999999853211 100 001123334321 111 13357777776
Q ss_pred HHhc---CCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhccccccccC
Q psy2887 80 ISNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEE 154 (899)
Q Consensus 80 ~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~ 154 (899)
+... +...|+||||+|.|.. .+.|.|+..++. +.+++|++|+.+. .+.+.+++||..+.|..
T Consensus 111 ~~~~p~~~~~kVvIIDEad~ls~--------~a~naLLK~LEepp~~~~fIL~t~d~~-----kil~tI~SRc~~~~f~~ 177 (527)
T PRK14969 111 AQYAPTRGRFKVYIIDEVHMLSK--------SAFNAMLKTLEEPPEHVKFILATTDPQ-----KIPVTVLSRCLQFNLKQ 177 (527)
T ss_pred HhhCcccCCceEEEEcCcccCCH--------HHHHHHHHHHhCCCCCEEEEEEeCChh-----hCchhHHHHHHHHhcCC
Confidence 6421 3356999999999854 567889999986 5788999888877 67778999999999999
Q ss_pred CCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 155 PDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 155 p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
++.++...++..++++ .++.+++.++..+++.+.+.+. +++.+++.+.+.
T Consensus 178 l~~~~i~~~L~~il~~----egi~~~~~al~~la~~s~Gslr------~al~lldqai~~ 227 (527)
T PRK14969 178 MPPPLIVSHLQHILEQ----ENIPFDATALQLLARAAAGSMR------DALSLLDQAIAY 227 (527)
T ss_pred CCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHH------HHHHHHHHHHHh
Confidence 9999999999888775 5688999999999999987665 899999988765
No 228
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.46 E-value=1.6e-12 Score=142.46 Aligned_cols=185 Identities=20% Similarity=0.354 Sum_probs=127.5
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCC--ceEEecccccccccchhh
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE--SIIRIDMSEFIEKHSISR 465 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~--~~~~~~~~~~~~~~~~~~ 465 (899)
.+++|++.+++.+...+.... . ++++|+||||||||++|+++++.+++.+. .++.+++++.......
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~-------~--~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~-- 85 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKN-------M--PHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVI-- 85 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCC-------C--CeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHH--
Confidence 457799999999998886422 1 25899999999999999999999865432 3344433321110000
Q ss_pred ccCCCCCcccccccchhhHHHHh-----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCC
Q psy2887 466 LIGAPPGYIGYEEGGYLTEIVRR-----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNL 540 (899)
Q Consensus 466 l~g~~~~~~g~~~~~~l~~~~~~-----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~ 540 (899)
...+...... .+..+|+|||++.+....++.|+..++. ...++.+|+++|.
T Consensus 86 -------------~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~-----------~~~~~~lIl~~~~ 141 (319)
T PRK00440 86 -------------RNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEM-----------YSQNTRFILSCNY 141 (319)
T ss_pred -------------HHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhc-----------CCCCCeEEEEeCC
Confidence 0111222221 2356999999999999999999999986 2345678888875
Q ss_pred ChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHH
Q psy2887 541 GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALK 620 (899)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 620 (899)
... +.+.+.+|+ .++.|.|++.+++..++...+. ..+ +.+++++++
T Consensus 142 ~~~------------------------l~~~l~sr~-~~~~~~~l~~~ei~~~l~~~~~-------~~~--~~i~~~al~ 187 (319)
T PRK00440 142 SSK------------------------IIDPIQSRC-AVFRFSPLKKEAVAERLRYIAE-------NEG--IEITDDALE 187 (319)
T ss_pred ccc------------------------cchhHHHHh-heeeeCCCCHHHHHHHHHHHHH-------HcC--CCCCHHHHH
Confidence 332 344578898 6899999999999988877663 334 568999999
Q ss_pred HHHhcccCcccccccccccHHHHHHHH
Q psy2887 621 KISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 621 ~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
++++. .-||+......|+.+.
T Consensus 188 ~l~~~------~~gd~r~~~~~l~~~~ 208 (319)
T PRK00440 188 AIYYV------SEGDMRKAINALQAAA 208 (319)
T ss_pred HHHHH------cCCCHHHHHHHHHHHH
Confidence 99883 2366666655555433
No 229
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.46 E-value=1.2e-12 Score=135.49 Aligned_cols=162 Identities=12% Similarity=0.122 Sum_probs=108.3
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 499 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 499 (899)
+++|+||||||||+|++++++.+...+..+..+.+...... ...+.+.+.. ..+|+|||+
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~------------------~~~~~~~~~~--~dlliiDdi 106 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF------------------VPEVLEGMEQ--LSLVCIDNI 106 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh------------------hHHHHHHhhh--CCEEEEeCh
Confidence 69999999999999999999988655555666555442110 0112222332 259999999
Q ss_pred cccC--HHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccC
Q psy2887 500 EKAN--SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRID 577 (899)
Q Consensus 500 d~~~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~ 577 (899)
+.+. +..+..|+.+++... ...+..+|+||+.++..+. .+.|+|.+|+.
T Consensus 107 ~~~~~~~~~~~~lf~l~n~~~---------e~g~~~li~ts~~~p~~l~--------------------~~~~~L~SRl~ 157 (235)
T PRK08084 107 ECIAGDELWEMAIFDLYNRIL---------ESGRTRLLITGDRPPRQLN--------------------LGLPDLASRLD 157 (235)
T ss_pred hhhcCCHHHHHHHHHHHHHHH---------HcCCCeEEEeCCCChHHcC--------------------cccHHHHHHHh
Confidence 9885 444555555554310 0123457888887776432 25688999995
Q ss_pred --eEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCcccccccccccHHHHHH
Q psy2887 578 --DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSI 645 (899)
Q Consensus 578 --~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~ 645 (899)
.++.+.|++.+++.+++++.. ..++ +.++++++++|++. .-||++.....+++
T Consensus 158 ~g~~~~l~~~~~~~~~~~l~~~a-------~~~~--~~l~~~v~~~L~~~------~~~d~r~l~~~l~~ 212 (235)
T PRK08084 158 WGQIYKLQPLSDEEKLQALQLRA-------RLRG--FELPEDVGRFLLKR------LDREMRTLFMTLDQ 212 (235)
T ss_pred CCceeeecCCCHHHHHHHHHHHH-------HHcC--CCCCHHHHHHHHHh------hcCCHHHHHHHHHH
Confidence 699999999999999976544 2234 78999999999982 23555554333444
No 230
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=5.9e-13 Score=155.60 Aligned_cols=201 Identities=17% Similarity=0.275 Sum_probs=128.6
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCc--eE-Eeccc---cccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES--II-RIDMS---EFIEKH 461 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~--~~-~~~~~---~~~~~~ 461 (899)
.+++||+.+++.|..++...+. .+.+||+||+|+|||++|+++|+.+...... .. +-.|. .+....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i--------~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~ 87 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRV--------AHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGS 87 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCC--------ceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCC
Confidence 6788999999999998876432 1257999999999999999999998421110 00 00111 111100
Q ss_pred chhhccCCCCCcccccccchhhHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEe
Q psy2887 462 SISRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMT 537 (899)
Q Consensus 462 ~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 537 (899)
....+.-.....++.+..+.+.+.+.. +...|+||||+|.++...++.|++.|++ ...+++||++
T Consensus 88 ~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEe-----------pp~~tv~Il~ 156 (585)
T PRK14950 88 AVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEE-----------PPPHAIFILA 156 (585)
T ss_pred CCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhc-----------CCCCeEEEEE
Confidence 000000000012222222334333332 3457999999999999999999999997 3356778887
Q ss_pred cCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHH
Q psy2887 538 SNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKA 617 (899)
Q Consensus 538 sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 617 (899)
++... .+.+.+.+|+ ..+.|.+++.+++..++...+. ..+ +.++++
T Consensus 157 t~~~~------------------------kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~-------~eg--l~i~~e 202 (585)
T PRK14950 157 TTEVH------------------------KVPATILSRC-QRFDFHRHSVADMAAHLRKIAA-------AEG--INLEPG 202 (585)
T ss_pred eCChh------------------------hhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHH-------HcC--CCCCHH
Confidence 76321 1345578999 7899999999999888766652 344 668899
Q ss_pred HHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 618 ALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 618 ~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
++..|+... -||+......|+++.
T Consensus 203 al~~La~~s------~Gdlr~al~~LekL~ 226 (585)
T PRK14950 203 ALEAIARAA------TGSMRDAENLLQQLA 226 (585)
T ss_pred HHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 999998732 355555544455543
No 231
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.46 E-value=7.1e-13 Score=137.43 Aligned_cols=183 Identities=13% Similarity=0.185 Sum_probs=126.5
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCC
Q psy2887 392 GQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPP 471 (899)
Q Consensus 392 gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 471 (899)
+...+++.+...+... ...+++|+||||||||++|+++++.+...+.+++.++++.+.... .
T Consensus 21 ~~~~~~~~l~~~~~~~---------~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--~------- 82 (226)
T TIGR03420 21 GNAELLAALRQLAAGK---------GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--P------- 82 (226)
T ss_pred CcHHHHHHHHHHHhcC---------CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--H-------
Confidence 4566777776664321 123699999999999999999999987667788999988775421 0
Q ss_pred CcccccccchhhHHHHhCCCEEEEEccccccCHHH--HHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhh
Q psy2887 472 GYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDV--FNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEME 549 (899)
Q Consensus 472 ~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~--~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~ 549 (899)
.+...+. ..++|+|||++.++... ++.|+.+++... ..+..+|+|++.....+
T Consensus 83 ---------~~~~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~----------~~~~~iIits~~~~~~~---- 137 (226)
T TIGR03420 83 ---------EVLEGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNRVR----------EAGGRLLIAGRAAPAQL---- 137 (226)
T ss_pred ---------HHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHHH----------HcCCeEEEECCCChHHC----
Confidence 1112222 23599999999998744 888888876411 12346788888654321
Q ss_pred cCcHHHHHHHHHHHHhhcCChhHhhccC--eEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhccc
Q psy2887 550 KGDKEIIKLAVMNEVKIYFRPEFINRID--DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGF 627 (899)
Q Consensus 550 ~~~~~~~~~~~~~~l~~~~~~~l~~R~~--~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 627 (899)
....++|.+|+. ..+.++|++.++...++...+. ..+ +.++++++++|.. +
T Consensus 138 ----------------~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~-------~~~--~~~~~~~l~~L~~--~ 190 (226)
T TIGR03420 138 ----------------PLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAA-------RRG--LQLPDEVADYLLR--H 190 (226)
T ss_pred ----------------CcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHH-------HcC--CCCCHHHHHHHHH--h
Confidence 112266888884 6899999999999988765542 223 6789999999998 3
Q ss_pred CcccccccccccHHHHHH
Q psy2887 628 DLIYGARDVHGCKKSLSI 645 (899)
Q Consensus 628 ~~~~~~~di~~~~~~l~~ 645 (899)
+..+++.+..+++.+..
T Consensus 191 -~~gn~r~L~~~l~~~~~ 207 (226)
T TIGR03420 191 -GSRDMGSLMALLDALDR 207 (226)
T ss_pred -ccCCHHHHHHHHHHHHH
Confidence 66677777777555444
No 232
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=4.1e-12 Score=145.75 Aligned_cols=172 Identities=19% Similarity=0.161 Sum_probs=127.9
Q ss_pred CCC-eEEEcCCCCcHHHHHHHHHHHHHcCCCCCc----------------cCCCeEEEEehhhhhcCcccCchHHHHHHH
Q psy2887 13 TSN-PVLIGEPGVGKTAIVEGLAQRIINGEVPNS----------------LLSKKILLLDIALLLAGTKYRGEFEDRLKK 75 (899)
Q Consensus 13 ~~~-iLL~GppGtGKTtla~~la~~l~~~~~p~~----------------l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~ 75 (899)
-.| +||+||+||||||+|+++|+.+.....+.. -....+++++.. +..| ...+++
T Consensus 34 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaa------s~~g--vd~iRe 105 (584)
T PRK14952 34 INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAA------SHGG--VDDTRE 105 (584)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccc------cccC--HHHHHH
Confidence 445 689999999999999999998864221100 012334444321 1112 223555
Q ss_pred HHHHHHh---cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhccccc
Q psy2887 76 ILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKI 150 (899)
Q Consensus 76 ~~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i 150 (899)
+.+.+.. .....|+||||+|.|.. .+.|.|+..|+. +.+++|++|+... .+.+++++|+..+
T Consensus 106 l~~~~~~~P~~~~~KVvIIDEah~Lt~--------~A~NALLK~LEEpp~~~~fIL~tte~~-----kll~TI~SRc~~~ 172 (584)
T PRK14952 106 LRDRAFYAPAQSRYRIFIVDEAHMVTT--------AGFNALLKIVEEPPEHLIFIFATTEPE-----KVLPTIRSRTHHY 172 (584)
T ss_pred HHHHHHhhhhcCCceEEEEECCCcCCH--------HHHHHHHHHHhcCCCCeEEEEEeCChH-----hhHHHHHHhceEE
Confidence 5554431 23456999999999964 578899999986 6789999888887 7889999999999
Q ss_pred cccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhh
Q psy2887 151 LVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 215 (899)
Q Consensus 151 ~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~ 215 (899)
.|..++.++..++++.++++ .++.++++++..+++.+.+.+. +++.+++..++..
T Consensus 173 ~F~~l~~~~i~~~L~~i~~~----egi~i~~~al~~Ia~~s~GdlR------~aln~Ldql~~~~ 227 (584)
T PRK14952 173 PFRLLPPRTMRALIARICEQ----EGVVVDDAVYPLVIRAGGGSPR------DTLSVLDQLLAGA 227 (584)
T ss_pred EeeCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHH------HHHHHHHHHHhcc
Confidence 99999999999999888876 5788999999999999887655 8899999877643
No 233
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=9.9e-13 Score=145.25 Aligned_cols=171 Identities=22% Similarity=0.223 Sum_probs=122.3
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCc--c------------CCCeEEEEehhhhhcCcccCchHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNS--L------------LSKKILLLDIALLLAGTKYRGEFEDRLKKILK 78 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~--l------------~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~ 78 (899)
+..+||+||||+||||+|+++|+.+.....+.. . ....++.++.. .. .....++++++
T Consensus 38 ~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~------~~--~~v~~ir~i~~ 109 (363)
T PRK14961 38 HHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAA------SR--TKVEEMREILD 109 (363)
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEeccc------cc--CCHHHHHHHHH
Confidence 334699999999999999999998853110000 0 00123333221 11 11234666666
Q ss_pred HHHhc---CCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhcccccccc
Q psy2887 79 EISNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVE 153 (899)
Q Consensus 79 ~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~ 153 (899)
.+... +...|++|||+|.+.. .+.+.|+..++. +.+.+|++|+..+ .+.+++.+||..+.|+
T Consensus 110 ~~~~~p~~~~~kviIIDEa~~l~~--------~a~naLLk~lEe~~~~~~fIl~t~~~~-----~l~~tI~SRc~~~~~~ 176 (363)
T PRK14961 110 NIYYSPSKSRFKVYLIDEVHMLSR--------HSFNALLKTLEEPPQHIKFILATTDVE-----KIPKTILSRCLQFKLK 176 (363)
T ss_pred HHhcCcccCCceEEEEEChhhcCH--------HHHHHHHHHHhcCCCCeEEEEEcCChH-----hhhHHHHhhceEEeCC
Confidence 55421 2346999999999853 466778888875 5677888887776 6889999999999999
Q ss_pred CCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 154 EPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 154 ~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
+|+.++..++++..++. .++.++++++..++..+.+.+. ++.++++.++..
T Consensus 177 ~l~~~el~~~L~~~~~~----~g~~i~~~al~~ia~~s~G~~R------~al~~l~~~~~~ 227 (363)
T PRK14961 177 IISEEKIFNFLKYILIK----ESIDTDEYALKLIAYHAHGSMR------DALNLLEHAINL 227 (363)
T ss_pred CCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHH------HHHHHHHHHHHh
Confidence 99999999999988876 4678999999999999877554 788888887654
No 234
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=7.6e-12 Score=142.25 Aligned_cols=168 Identities=23% Similarity=0.205 Sum_probs=123.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHcCC-CCC------------ccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHh
Q psy2887 16 PVLIGEPGVGKTAIVEGLAQRIINGE-VPN------------SLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN 82 (899)
Q Consensus 16 iLL~GppGtGKTtla~~la~~l~~~~-~p~------------~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~ 82 (899)
+||+|||||||||+|+++|+.+...+ .+. ......++.++... ..+ ...++++.+.+..
T Consensus 39 ~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~------~~~--vd~iR~l~~~~~~ 110 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAAS------NNS--VEDVRDLREKVLL 110 (504)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccc------cCC--HHHHHHHHHHHhh
Confidence 49999999999999999999985321 000 01122355554321 111 2345555444432
Q ss_pred ---cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhccccccccCCCH
Q psy2887 83 ---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDI 157 (899)
Q Consensus 83 ---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~ 157 (899)
...+.|++|||+|.+.. ...+.|+..++. ..+++|++|+... .+.+.+.+|+..+.|.+|+.
T Consensus 111 ~p~~~~~kVVIIDEad~ls~--------~a~naLLk~LEep~~~t~~Il~t~~~~-----kl~~~I~SRc~~~~f~~ls~ 177 (504)
T PRK14963 111 APLRGGRKVYILDEAHMMSK--------SAFNALLKTLEEPPEHVIFILATTEPE-----KMPPTILSRTQHFRFRRLTE 177 (504)
T ss_pred ccccCCCeEEEEECccccCH--------HHHHHHHHHHHhCCCCEEEEEEcCChh-----hCChHHhcceEEEEecCCCH
Confidence 23467999999998742 567788888876 4678888888776 78899999999999999999
Q ss_pred HHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 158 EETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 158 ~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
++...+++.++++ .++.++++++..+++.+++.+. ++..+++.+...
T Consensus 178 ~el~~~L~~i~~~----egi~i~~~Al~~ia~~s~GdlR------~aln~Lekl~~~ 224 (504)
T PRK14963 178 EEIAGKLRRLLEA----EGREAEPEALQLVARLADGAMR------DAESLLERLLAL 224 (504)
T ss_pred HHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHH------HHHHHHHHHHhc
Confidence 9999999988876 5788999999999999988766 888888877543
No 235
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.44 E-value=8.4e-13 Score=144.26 Aligned_cols=176 Identities=29% Similarity=0.332 Sum_probs=120.3
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccc
Q psy2887 379 LLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 458 (899)
Q Consensus 379 l~~l~~~l~~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~ 458 (899)
...+...+...++|++.++..+..++.... ++||.||||||||++|+.+|+.+ +.+|++++|....
T Consensus 15 ~~~~~~~~~~~~~g~~~~~~~~l~a~~~~~-----------~vll~G~PG~gKT~la~~lA~~l---~~~~~~i~~t~~l 80 (329)
T COG0714 15 LGKIRSELEKVVVGDEEVIELALLALLAGG-----------HVLLEGPPGVGKTLLARALARAL---GLPFVRIQCTPDL 80 (329)
T ss_pred HHHHHhhcCCeeeccHHHHHHHHHHHHcCC-----------CEEEECCCCccHHHHHHHHHHHh---CCCeEEEecCCCC
Confidence 344556666779999999988888877543 69999999999999999999999 8999999998765
Q ss_pred cccchhhccCCCCCccc---ccc----cchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecC-
Q psy2887 459 EKHSISRLIGAPPGYIG---YEE----GGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFR- 530 (899)
Q Consensus 459 ~~~~~~~l~g~~~~~~g---~~~----~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~- 530 (899)
.. +.++|...-..- ... .+.++.... +|+++|||+++++.+++.|+++|++++++...-.+....
T Consensus 81 ~p---~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~ 153 (329)
T COG0714 81 LP---SDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPP 153 (329)
T ss_pred CH---HHhcCchhHhhhhccCCeEEEecCCcccccc----eEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCC
Confidence 54 334443221000 000 012222222 599999999999999999999999988886542213333
Q ss_pred CeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHH
Q psy2887 531 NTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIA 594 (899)
Q Consensus 531 ~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~ 594 (899)
..++|+|+|..... -...+++++++||...+.+..+..++-..++
T Consensus 154 ~f~viaT~Np~e~~-------------------g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i 198 (329)
T COG0714 154 PFIVIATQNPGEYE-------------------GTYPLPEALLDRFLLRIYVDYPDSEEEERII 198 (329)
T ss_pred CCEEEEccCccccC-------------------CCcCCCHHHHhhEEEEEecCCCCchHHHHHH
Confidence 44566666732220 0234678899999777888887454444443
No 236
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=5.5e-12 Score=145.88 Aligned_cols=172 Identities=22% Similarity=0.250 Sum_probs=128.3
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCc--------------cCCCeEEEEehhhhhcCcccCchHHHHHHHHH
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNS--------------LLSKKILLLDIALLLAGTKYRGEFEDRLKKIL 77 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~--------------l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~ 77 (899)
....+||+||+|||||++|+.+|+.+.....+.. .....++.++.. +. .....++++.
T Consensus 37 ~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaa------s~--~~vd~ir~i~ 108 (559)
T PRK05563 37 ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAA------SN--NGVDEIRDIR 108 (559)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeecc------cc--CCHHHHHHHH
Confidence 3444788999999999999999998854321111 112234444431 11 2233577777
Q ss_pred HHHHh---cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhccccccc
Q psy2887 78 KEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILV 152 (899)
Q Consensus 78 ~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l 152 (899)
+.+.. .+...|+||||+|.|.. .+.+.|+..++. ..+++|++|+.+. .+.+.+++||..+.|
T Consensus 109 ~~v~~~p~~~~~kViIIDE~~~Lt~--------~a~naLLKtLEepp~~~ifIlatt~~~-----ki~~tI~SRc~~~~f 175 (559)
T PRK05563 109 DKVKYAPSEAKYKVYIIDEVHMLST--------GAFNALLKTLEEPPAHVIFILATTEPH-----KIPATILSRCQRFDF 175 (559)
T ss_pred HHHhhCcccCCeEEEEEECcccCCH--------HHHHHHHHHhcCCCCCeEEEEEeCChh-----hCcHHHHhHheEEec
Confidence 76652 23456999999999953 577889999985 4678888888776 788999999999999
Q ss_pred cCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 153 EEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 153 ~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
..|+.++...+++.++++ .++.++++++..++..+.+.+. ++..+++.+.+.
T Consensus 176 ~~~~~~ei~~~L~~i~~~----egi~i~~~al~~ia~~s~G~~R------~al~~Ldq~~~~ 227 (559)
T PRK05563 176 KRISVEDIVERLKYILDK----EGIEYEDEALRLIARAAEGGMR------DALSILDQAISF 227 (559)
T ss_pred CCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHH------HHHHHHHHHHHh
Confidence 999999999999988875 6788999999999999877554 888888887664
No 237
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.44 E-value=1.7e-12 Score=144.47 Aligned_cols=177 Identities=23% Similarity=0.287 Sum_probs=138.2
Q ss_pred CCCCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCc-----------cC-C--CeEEEEehhhhhcCcccCchHHHHHH
Q psy2887 9 NFYFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNS-----------LL-S--KKILLLDIALLLAGTKYRGEFEDRLK 74 (899)
Q Consensus 9 ~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~-----------l~-~--~~~~~~~~~~l~~~~~~~g~~~~~l~ 74 (899)
..|-....||.||.||||||+||.+|+.+.....+.. +. | .+++++|. .+.. ..+.++
T Consensus 34 ~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDa------ASn~--gVddiR 105 (515)
T COG2812 34 NGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDA------ASNT--GVDDIR 105 (515)
T ss_pred hCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhh------hhcc--ChHHHH
Confidence 3455567899999999999999999999865431110 00 0 11222221 1112 234578
Q ss_pred HHHHHHHh---cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhcccc
Q psy2887 75 KILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQK 149 (899)
Q Consensus 75 ~~~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~ 149 (899)
++.+++.. .+..-|++|||+|.|.. .+.|.|+..+|. ..|++|+||+.+. .+.+.+++||+.
T Consensus 106 ~i~e~v~y~P~~~ryKVyiIDEvHMLS~--------~afNALLKTLEEPP~hV~FIlATTe~~-----Kip~TIlSRcq~ 172 (515)
T COG2812 106 EIIEKVNYAPSEGRYKVYIIDEVHMLSK--------QAFNALLKTLEEPPSHVKFILATTEPQ-----KIPNTILSRCQR 172 (515)
T ss_pred HHHHHhccCCccccceEEEEecHHhhhH--------HHHHHHhcccccCccCeEEEEecCCcC-----cCchhhhhcccc
Confidence 88887752 23456999999999964 788999999986 4799999999999 999999999999
Q ss_pred ccccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhh
Q psy2887 150 ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIK 216 (899)
Q Consensus 150 i~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~ 216 (899)
+.|...+.++....|..++.+ .++.++++++..+++.++|.++ ++..++|++.+...
T Consensus 173 f~fkri~~~~I~~~L~~i~~~----E~I~~e~~aL~~ia~~a~Gs~R------DalslLDq~i~~~~ 229 (515)
T COG2812 173 FDFKRLDLEEIAKHLAAILDK----EGINIEEDALSLIARAAEGSLR------DALSLLDQAIAFGE 229 (515)
T ss_pred ccccCCCHHHHHHHHHHHHHh----cCCccCHHHHHHHHHHcCCChh------hHHHHHHHHHHccC
Confidence 999999999999999988886 7899999999999999999877 99999999998764
No 238
>KOG2004|consensus
Probab=99.43 E-value=6.3e-13 Score=147.15 Aligned_cols=177 Identities=20% Similarity=0.278 Sum_probs=130.0
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcC-------cccCchHHHHHHHHHHHHHhcCCCE
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG-------TKYRGEFEDRLKKILKEISNNQKDI 87 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~-------~~~~g~~~~~l~~~~~~~~~~~~~~ 87 (899)
-++|+||||+|||++++.||..+ +..++.+.++.+... ..|+|...-++-+.++...-.+ |
T Consensus 440 IlCf~GPPGVGKTSI~kSIA~AL----------nRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~N-P- 507 (906)
T KOG2004|consen 440 ILCFVGPPGVGKTSIAKSIARAL----------NRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTEN-P- 507 (906)
T ss_pred EEEEeCCCCCCcccHHHHHHHHh----------CCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCC-c-
Confidence 46889999999999999999999 889999887766432 2366776667777777765333 4
Q ss_pred EEEEccccccccCCCCCchhhHHHhhhhhhc-----------------CCceEEEEecChhHHHHhhhcCHHHHhccccc
Q psy2887 88 IIFIDELHTMIGTGKVEGSIDAGNMLKPELS-----------------RGELHCIGATTLNEYRQYIEKDAAFERRFQKI 150 (899)
Q Consensus 88 iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~-----------------~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i 150 (899)
+++|||+|.+.....+ +-..+|+..|+ -.+|.||+|.|..+ .++++|+.|+.+|
T Consensus 508 liLiDEvDKlG~g~qG----DPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~id-----tIP~pLlDRMEvI 578 (906)
T KOG2004|consen 508 LILIDEVDKLGSGHQG----DPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVID-----TIPPPLLDRMEVI 578 (906)
T ss_pred eEEeehhhhhCCCCCC----ChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccc-----cCChhhhhhhhee
Confidence 8999999999742222 22335555552 24789999999999 8999999999999
Q ss_pred cccCCCHHHHHHHHHhhhh-hhhc-----ccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHH
Q psy2887 151 LVEEPDIEETISILRGLQK-KYEV-----HHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAA 212 (899)
Q Consensus 151 ~l~~p~~~e~~~il~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~ 212 (899)
+++-+..+|.++|.++++- +... ...+.+++.++..+++...+..+-|.+....-.+++.++
T Consensus 579 elsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iekI~Rk~A 646 (906)
T KOG2004|consen 579 ELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQIEKICRKVA 646 (906)
T ss_pred eccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999999999976653 2222 334689999999888877776664444444444444443
No 239
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=4.5e-12 Score=151.05 Aligned_cols=171 Identities=20% Similarity=0.166 Sum_probs=125.6
Q ss_pred CCC-eEEEcCCCCcHHHHHHHHHHHHHcCCCCCc----------------cCCCeEEEEehhhhhcCcccCchHHHHHHH
Q psy2887 13 TSN-PVLIGEPGVGKTAIVEGLAQRIINGEVPNS----------------LLSKKILLLDIALLLAGTKYRGEFEDRLKK 75 (899)
Q Consensus 13 ~~~-iLL~GppGtGKTtla~~la~~l~~~~~p~~----------------l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~ 75 (899)
-.| +||+||+||||||+|+.||+.+.....+.. -....++.++... ..| ...+++
T Consensus 36 i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas------~~~--Vd~iR~ 107 (824)
T PRK07764 36 INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAAS------HGG--VDDARE 107 (824)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccc------cCC--HHHHHH
Confidence 345 799999999999999999999854221100 0122344443211 111 223455
Q ss_pred HHHHHH---hcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhccccc
Q psy2887 76 ILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKI 150 (899)
Q Consensus 76 ~~~~~~---~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i 150 (899)
+.+.+. ......|+||||+|.|.. ...|.|+.+|++ ..++||++|+..+ .+-+.+++||..+
T Consensus 108 l~~~~~~~p~~~~~KV~IIDEad~lt~--------~a~NaLLK~LEEpP~~~~fIl~tt~~~-----kLl~TIrSRc~~v 174 (824)
T PRK07764 108 LRERAFFAPAESRYKIFIIDEAHMVTP--------QGFNALLKIVEEPPEHLKFIFATTEPD-----KVIGTIRSRTHHY 174 (824)
T ss_pred HHHHHHhchhcCCceEEEEechhhcCH--------HHHHHHHHHHhCCCCCeEEEEEeCChh-----hhhHHHHhheeEE
Confidence 544433 123456999999999964 678899999986 6788898888777 6788999999999
Q ss_pred cccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 151 LVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 151 ~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
.|..++.++...+|+.++++ .++.++++++..+++.+.+.+. +++.++++.+..
T Consensus 175 ~F~~l~~~~l~~~L~~il~~----EGv~id~eal~lLa~~sgGdlR------~Al~eLEKLia~ 228 (824)
T PRK07764 175 PFRLVPPEVMRGYLERICAQ----EGVPVEPGVLPLVIRAGGGSVR------DSLSVLDQLLAG 228 (824)
T ss_pred EeeCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHH------HHHHHHHHHHhh
Confidence 99999999999999888775 5788999999999999987665 788888877643
No 240
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.43 E-value=1.5e-12 Score=139.67 Aligned_cols=179 Identities=19% Similarity=0.280 Sum_probs=111.7
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCC----CceEEe-cccccc----
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNE----ESIIRI-DMSEFI---- 458 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~----~~~~~~-~~~~~~---- 458 (899)
..|+||++++..|..++.... .+.+||.||+|||||++|+++++.+.... .+|... +.++..
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~---------~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~ 87 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPK---------IGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEV 87 (350)
T ss_pred HHHhChHHHHHHHHHhccCCC---------CCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhh
Confidence 568899999999988776432 23699999999999999999999984211 223200 000000
Q ss_pred -----------------------cccchhhccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccCHHHHHHHHHh
Q psy2887 459 -----------------------EKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANSDVFNILLQI 513 (899)
Q Consensus 459 -----------------------~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~ 513 (899)
......+++|.-.-......+ ..-.+.+.++..++||+||++.+++.+|+.|++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LLea 167 (350)
T CHL00081 88 REAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLDS 167 (350)
T ss_pred hhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHHHH
Confidence 000112222211000000000 0012233455678999999999999999999999
Q ss_pred hcCCceec-CCCceEec-CCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCC-HHHH
Q psy2887 514 LDDGRLTD-NRGRTINF-RNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLN-RKNI 590 (899)
Q Consensus 514 le~g~~~~-~~g~~~~~-~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~-~~~~ 590 (899)
|++|..+- ..|.+... .+.++|+|.|.. .+.|+++|++||...+.+..++ .++.
T Consensus 168 m~e~~~~ier~G~s~~~p~rfiviaT~np~-----------------------eg~l~~~LldRf~l~i~l~~~~~~~~e 224 (350)
T CHL00081 168 AASGWNTVEREGISIRHPARFVLVGSGNPE-----------------------EGELRPQLLDRFGMHAEIRTVKDPELR 224 (350)
T ss_pred HHhCCeEEeeCCeeeecCCCEEEEeccCcc-----------------------cCCCCHHHHHHhCceeecCCCCChHHH
Confidence 99876542 23444333 344555555532 2358999999999999999987 4777
Q ss_pred HHHHHHHH
Q psy2887 591 LSIANIQL 598 (899)
Q Consensus 591 ~~i~~~~l 598 (899)
.+|++...
T Consensus 225 ~~il~~~~ 232 (350)
T CHL00081 225 VKIVEQRT 232 (350)
T ss_pred HHHHHhhh
Confidence 78887653
No 241
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=99.43 E-value=4.4e-13 Score=141.38 Aligned_cols=147 Identities=22% Similarity=0.348 Sum_probs=106.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCcccccccccccHHHHHHHHHHhhccCCccceeecc
Q psy2887 584 YLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLG 663 (899)
Q Consensus 584 ~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~G 663 (899)
.++.+++.+++.....- ++.+..-+.+ -.+.+.+|||||++..+.++++..++ ++.++++|+|
T Consensus 22 ~~~~~~i~~l~~~~~~i----l~~ep~~l~i------------~~~i~viGDIHG~~~~L~~l~~~~~~-~~~~~~lfLG 84 (293)
T cd07414 22 QLTEAEIRGLCLKSREI----FLSQPILLEL------------EAPLKICGDIHGQYYDLLRLFEYGGF-PPESNYLFLG 84 (293)
T ss_pred CCCHHHHHHHHHHHHHH----HHhCCCeEec------------CCceEEEEecCCCHHHHHHHHHhcCC-CCcceEEEEe
Confidence 46788888876555433 3333221222 13457799999999999999998887 4568899999
Q ss_pred ccCCCCceEehhHHHHHhcC----CccEEEccCChHhHHhHhhhcccCchhchHHHhhCCcChHHHHHHHhcCCceEEe-
Q psy2887 664 DLINKGPQSLDTLRMVYSMR----NYAKIVLGNHEIHLLDVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIYY- 738 (899)
Q Consensus 664 D~~d~g~~~~~~~~~l~~~~----~~~~~v~GNHe~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~- 738 (899)
|++|||+.+++++.+++.++ .++.++|||||.+.+....+..... ...+ .......+.+++..+|++...
T Consensus 85 DyVDRG~~s~e~i~ll~~lk~~~p~~i~llrGNHE~~~~~~~~gf~~e~-~~~y----~~~l~~~~~~~f~~lPlaa~i~ 159 (293)
T cd07414 85 DYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDEC-KRRY----NIKLWKTFTDCFNCLPVAAIID 159 (293)
T ss_pred eEecCCCCcHHHHHHHHHhhhhCCCcEEEEecccchhhHhhhcchhhHH-HHhh----hHHHHHHHHHHHHHhHHHHhhC
Confidence 99999999999999998763 4689999999999887655432111 0111 112246678999999999654
Q ss_pred CCEEEEeccccccc
Q psy2887 739 KKYLMIHAGVAKQW 752 (899)
Q Consensus 739 ~~~~~vHAg~~~~~ 752 (899)
+++++||||++|..
T Consensus 160 ~~i~cvHgGi~p~~ 173 (293)
T cd07414 160 EKIFCMHGGLSPDL 173 (293)
T ss_pred CcEEEEccCCCccc
Confidence 57899999999864
No 242
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.43 E-value=5e-13 Score=126.94 Aligned_cols=128 Identities=30% Similarity=0.517 Sum_probs=86.4
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCC---CcccccccchhhHHHHhCCCEEEEE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPP---GYIGYEEGGYLTEIVRRKPYSLILL 496 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~---~~~g~~~~~~l~~~~~~~~~~vl~l 496 (899)
+++|+||||||||++|+.+|+.+ +.++..+.++...+... ++|... +...... ..+...++ .++|+||
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~---~~~~~~i~~~~~~~~~d---l~g~~~~~~~~~~~~~-~~l~~a~~--~~~il~l 71 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL---GRPVIRINCSSDTTEED---LIGSYDPSNGQFEFKD-GPLVRAMR--KGGILVL 71 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH---TCEEEEEE-TTTSTHHH---HHCEEET-TTTTCEEE--CCCTTHH--EEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---hcceEEEEecccccccc---ceeeeeeccccccccc-cccccccc--ceeEEEE
Confidence 48999999999999999999999 88999999988665533 333211 1111111 22332333 4579999
Q ss_pred ccccccCHHHHHHHHHhhcCCceecCC-CceEecC-------CeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcC
Q psy2887 497 DEIEKANSDVFNILLQILDDGRLTDNR-GRTINFR-------NTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYF 568 (899)
Q Consensus 497 DEid~~~~~~~~~Ll~~le~g~~~~~~-g~~~~~~-------~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 568 (899)
||++++++.+++.|+++++++.+.... +...... +..||+|+|.... ....+
T Consensus 72 DEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~--------------------~~~~l 131 (139)
T PF07728_consen 72 DEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDK--------------------GRKEL 131 (139)
T ss_dssp SSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST----------------------TTTT
T ss_pred CCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCC--------------------CcCcC
Confidence 999999999999999999998877433 3333333 3899999997651 13468
Q ss_pred ChhHhhcc
Q psy2887 569 RPEFINRI 576 (899)
Q Consensus 569 ~~~l~~R~ 576 (899)
+++|.+||
T Consensus 132 ~~al~~Rf 139 (139)
T PF07728_consen 132 SPALLDRF 139 (139)
T ss_dssp CHHHHTT-
T ss_pred CHHHHhhC
Confidence 88899997
No 243
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.43 E-value=2e-12 Score=136.05 Aligned_cols=155 Identities=20% Similarity=0.307 Sum_probs=106.9
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchH----HH-HHHH-----------
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEF----ED-RLKK----------- 75 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~----~~-~l~~----------- 75 (899)
...++||.||||||||++|+++|+.+ +.+++.+++..-.......|.. .. ....
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~l----------g~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~ 89 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKR----------DRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDI 89 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHh----------CCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcc
Confidence 45689999999999999999999987 7778777654322111111111 00 0011
Q ss_pred --------HHHHHHhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC------------------ceEEEEecC
Q psy2887 76 --------ILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG------------------ELHCIGATT 129 (899)
Q Consensus 76 --------~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~------------------~v~vI~at~ 129 (899)
.+..+. ..+.+|+|||++.+.+ ++.+.|+..|+.+ .+.+|+|+|
T Consensus 90 ~~~~~~~g~l~~A~--~~g~~lllDEi~r~~~--------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN 159 (262)
T TIGR02640 90 VRQNWVDNRLTLAV--REGFTLVYDEFTRSKP--------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSN 159 (262)
T ss_pred cceeecCchHHHHH--HcCCEEEEcchhhCCH--------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeC
Confidence 111222 1245999999999754 5666777777432 467999999
Q ss_pred hhHHHHhhhcCHHHHhccccccccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhc
Q psy2887 130 LNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYI 195 (899)
Q Consensus 130 ~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (899)
+..+.....++++|.+||..+.++.|+.++-.+|++... .++++..++++++.....
T Consensus 160 ~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~---------~~~~~~~~~iv~~~~~~R 216 (262)
T TIGR02640 160 PVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKT---------DVAEDSAATIVRLVREFR 216 (262)
T ss_pred CccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhh---------CCCHHHHHHHHHHHHHHH
Confidence 887666567799999999889999999999999987543 256777777777765543
No 244
>KOG0740|consensus
Probab=99.43 E-value=9.7e-13 Score=141.86 Aligned_cols=199 Identities=17% Similarity=0.219 Sum_probs=142.0
Q ss_pred HHhhccCCChHHHHHHHHHHHHHhhc---CCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccc
Q psy2887 384 NLLCKRVVGQDEAISAVSNAIRRSRS---GLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEK 460 (899)
Q Consensus 384 ~~l~~~v~gq~~~~~~l~~~i~~~~~---~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~ 460 (899)
+....++.|.+.+++.+...+..... .+..-+.|...+||.||||+|||+|+++||.+. +..|+.+..+++.++
T Consensus 149 ~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~---~atff~iSassLtsK 225 (428)
T KOG0740|consen 149 NVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES---GATFFNISASSLTSK 225 (428)
T ss_pred cccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh---cceEeeccHHHhhhh
Confidence 34457888999999998887754321 111123333479999999999999999999999 889999999988776
Q ss_pred cchhhccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccC-----------HHHHHHHHHhhcCCceecCCCceE
Q psy2887 461 HSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRTI 527 (899)
Q Consensus 461 ~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~~ 527 (899)
|+|..+. +.++..++...++|+|+||||++- +.....+|-.++.+.. .
T Consensus 226 ------------~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s-------~ 286 (428)
T KOG0740|consen 226 ------------YVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNS-------A 286 (428)
T ss_pred ------------ccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccC-------C
Confidence 7887765 778888899999999999998553 2333333333332211 1
Q ss_pred ecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHh
Q psy2887 528 NFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLK 607 (899)
Q Consensus 528 ~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~ 607 (899)
.-.++++|.|||.+.+ ++..++.||..++.++.++.+....++...|.+
T Consensus 287 ~~drvlvigaTN~P~e------------------------~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~------- 335 (428)
T KOG0740|consen 287 PDDRVLVIGATNRPWE------------------------LDEAARRRFVKRLYIPLPDYETRSLLWKQLLKE------- 335 (428)
T ss_pred CCCeEEEEecCCCchH------------------------HHHHHHHHhhceeeecCCCHHHHHHHHHHHHHh-------
Confidence 2247788899998765 233467799889999999999999998888844
Q ss_pred cCcceeecHHHHHHHHhcccCccccccccccc
Q psy2887 608 MNMDLKISKAALKKISNIGFDLIYGARDVHGC 639 (899)
Q Consensus 608 ~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~ 639 (899)
. ...+++.-+..|++ ....|+-+||-.+
T Consensus 336 ~--~~~l~~~d~~~l~~--~Tegysgsdi~~l 363 (428)
T KOG0740|consen 336 Q--PNGLSDLDISLLAK--VTEGYSGSDITAL 363 (428)
T ss_pred C--CCCccHHHHHHHHH--HhcCcccccHHHH
Confidence 2 24556677777776 3344667776665
No 245
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.43 E-value=1.4e-12 Score=139.77 Aligned_cols=165 Identities=20% Similarity=0.349 Sum_probs=113.6
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCC--ceE-----Eecccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE--SII-----RIDMSEFIEK 460 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~--~~~-----~~~~~~~~~~ 460 (899)
.+|+||+.+++.+..++...+.. +.+||+||+|+||+++|.++|+.++..+. .+. ..+-+++.--
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~--------ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i 75 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIA--------PAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWV 75 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCC--------ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEE
Confidence 67899999999999999875421 37999999999999999999999965431 111 1111111100
Q ss_pred cchhhccCC---------------CCCcccccccchhhHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceec
Q psy2887 461 HSISRLIGA---------------PPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTD 521 (899)
Q Consensus 461 ~~~~~l~g~---------------~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~ 521 (899)
......-|. ..+.++.++.+.+.+.+.. +.+.|++||++|+++...+|+||+.||+
T Consensus 76 ~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEE----- 150 (314)
T PRK07399 76 EPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE----- 150 (314)
T ss_pred eccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhC-----
Confidence 000000010 0112222333455555543 3467999999999999999999999998
Q ss_pred CCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHH
Q psy2887 522 NRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQ 597 (899)
Q Consensus 522 ~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~ 597 (899)
+. +++||++|+... .+.|.+.||| .++.|.|++.+++.+++...
T Consensus 151 ------Pp-~~~fILi~~~~~------------------------~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~ 194 (314)
T PRK07399 151 ------PG-NGTLILIAPSPE------------------------SLLPTIVSRC-QIIPFYRLSDEQLEQVLKRL 194 (314)
T ss_pred ------CC-CCeEEEEECChH------------------------hCcHHHHhhc-eEEecCCCCHHHHHHHHHHh
Confidence 34 778888887432 3566699999 99999999999998887654
No 246
>PRK04195 replication factor C large subunit; Provisional
Probab=99.42 E-value=1.3e-12 Score=150.05 Aligned_cols=161 Identities=18% Similarity=0.271 Sum_probs=120.2
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhc-----CCCE
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNN-----QKDI 87 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~-----~~~~ 87 (899)
..++||+|||||||||+|+++|+.+ +..++.++.+... ....+..++..+... ..+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el----------~~~~ielnasd~r--------~~~~i~~~i~~~~~~~sl~~~~~k 100 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY----------GWEVIELNASDQR--------TADVIERVAGEAATSGSLFGARRK 100 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEcccccc--------cHHHHHHHHHHhhccCcccCCCCe
Confidence 6789999999999999999999998 7788887764322 112344444444321 2467
Q ss_pred EEEEccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCH-HHHhccccccccCCCHHHHHHHHHh
Q psy2887 88 IIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDA-AFERRFQKILVEEPDIEETISILRG 166 (899)
Q Consensus 88 iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~-al~~Rf~~i~l~~p~~~e~~~il~~ 166 (899)
||+|||+|.|.... .....+.|...++.....+|+++|... .+.+ .+++|+..|.|+.|+..++..+++.
T Consensus 101 vIiIDEaD~L~~~~----d~~~~~aL~~~l~~~~~~iIli~n~~~-----~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~ 171 (482)
T PRK04195 101 LILLDEVDGIHGNE----DRGGARAILELIKKAKQPIILTANDPY-----DPSLRELRNACLMIEFKRLSTRSIVPVLKR 171 (482)
T ss_pred EEEEecCccccccc----chhHHHHHHHHHHcCCCCEEEeccCcc-----ccchhhHhccceEEEecCCCHHHHHHHHHH
Confidence 99999999997532 123445677777777777777888764 5555 7888998899999999999999998
Q ss_pred hhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHH
Q psy2887 167 LQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDE 210 (899)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~ 210 (899)
++.. .++.++++++..+++.+.+.+. .++..+..
T Consensus 172 i~~~----egi~i~~eaL~~Ia~~s~GDlR------~ain~Lq~ 205 (482)
T PRK04195 172 ICRK----EGIECDDEALKEIAERSGGDLR------SAINDLQA 205 (482)
T ss_pred HHHH----cCCCCCHHHHHHHHHHcCCCHH------HHHHHHHH
Confidence 8875 6788999999999999877655 55555544
No 247
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.42 E-value=1.5e-12 Score=156.68 Aligned_cols=181 Identities=18% Similarity=0.277 Sum_probs=127.6
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccC-------CCceEEecccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN-------EESIIRIDMSEFIEK 460 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~-------~~~~~~~~~~~~~~~ 460 (899)
..++|+++.++.+...+.+.. ..+++|+||||||||++|+++|+.+... +..++.++++.+...
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~---------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~ 252 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK---------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAG 252 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC---------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhh
Confidence 578999999998887775432 2369999999999999999999988432 345666666555321
Q ss_pred cchhhccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccC---------HHHHHHHHHhhcCCceecCCCceEec
Q psy2887 461 HSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN---------SDVFNILLQILDDGRLTDNRGRTINF 529 (899)
Q Consensus 461 ~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~---------~~~~~~Ll~~le~g~~~~~~g~~~~~ 529 (899)
..|.|..+. +.+++.+....+.||||||++.+. .++++.|.+.|+.|
T Consensus 253 ----------~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g------------ 310 (731)
T TIGR02639 253 ----------TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG------------ 310 (731)
T ss_pred ----------ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC------------
Confidence 114443333 344554555567899999999774 35688899998874
Q ss_pred CCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy2887 530 RNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMN 609 (899)
Q Consensus 530 ~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~ 609 (899)
+..+|.+||.. ++... -..++.|.+|| ..|.+.+++.++..+|++....++.. .
T Consensus 311 -~i~~IgaTt~~--e~~~~-----------------~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~e~-----~ 364 (731)
T TIGR02639 311 -KLRCIGSTTYE--EYKNH-----------------FEKDRALSRRF-QKIDVGEPSIEETVKILKGLKEKYEE-----F 364 (731)
T ss_pred -CeEEEEecCHH--HHHHH-----------------hhhhHHHHHhC-ceEEeCCCCHHHHHHHHHHHHHHHHh-----c
Confidence 35578888841 11110 01367899999 58999999999999999887765432 1
Q ss_pred cceeecHHHHHHHHhc
Q psy2887 610 MDLKISKAALKKISNI 625 (899)
Q Consensus 610 ~~~~~~~~~~~~L~~~ 625 (899)
..+.++++++..++..
T Consensus 365 ~~v~i~~~al~~~~~l 380 (731)
T TIGR02639 365 HHVKYSDEALEAAVEL 380 (731)
T ss_pred cCcccCHHHHHHHHHh
Confidence 2377899999999873
No 248
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=99.42 E-value=5.4e-13 Score=140.07 Aligned_cols=149 Identities=20% Similarity=0.332 Sum_probs=106.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCcccccccccccHHHHHHHHHHhhccCCccceeecc
Q psy2887 584 YLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLG 663 (899)
Q Consensus 584 ~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~G 663 (899)
.++.+++.++++...+-+ +.+..-+.++ .+.+.+|||||++..|.++++..++ ++.++++|+|
T Consensus 14 ~l~~~~~~~l~~~~~~il----~~e~~~~~i~------------~~i~vvGDIHG~~~dL~~ll~~~~~-~~~~~~lfLG 76 (285)
T cd07415 14 LLPESEVKSLCEKAKEIL----VKESNVQRVR------------SPVTVCGDIHGQFYDLLELFRVGGD-PPDTNYLFLG 76 (285)
T ss_pred CCCHHHHHHHHHHHHHHH----HhCCCEEecC------------CCEEEEEeCCCCHHHHHHHHHHcCC-CCCCeEEEEe
Confidence 467778877766554333 2232212221 3457799999999999999988886 4568899999
Q ss_pred ccCCCCceEehhHHHHHhcC----CccEEEccCChHhHHhHhhhcccCchhchHHHhhCCcChHHHHHHHhcCCceEEe-
Q psy2887 664 DLINKGPQSLDTLRMVYSMR----NYAKIVLGNHEIHLLDVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIYY- 738 (899)
Q Consensus 664 D~~d~g~~~~~~~~~l~~~~----~~~~~v~GNHe~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~- 738 (899)
|++|||+.+.+++.+++.++ .++.+++||||...+....+.. .+....+........+.+|+..||++...
T Consensus 77 DyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~ygf~----~e~~~~y~~~~l~~~~~~~f~~lPlaaii~ 152 (285)
T cd07415 77 DYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHESRQITQVYGFY----DECLRKYGNANVWKYCTDLFDYLPLAALID 152 (285)
T ss_pred EECCCCcCHHHHHHHHHHHhhcCCCcEEEEecccchHhhhhhcchh----HHHHHhcCchHHHHHHHHHHHHhHHHhEeC
Confidence 99999999999999998763 4789999999998776544321 11222221122346788999999998554
Q ss_pred CCEEEEecccccccc
Q psy2887 739 KKYLMIHAGVAKQWT 753 (899)
Q Consensus 739 ~~~~~vHAg~~~~~~ 753 (899)
+++++||||++|...
T Consensus 153 ~~i~cvHgGi~p~~~ 167 (285)
T cd07415 153 NQIFCVHGGLSPSID 167 (285)
T ss_pred CeEEEEcCCCCCCcc
Confidence 569999999998643
No 249
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=8.4e-12 Score=145.09 Aligned_cols=175 Identities=20% Similarity=0.234 Sum_probs=130.0
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCc--------------cCCCeEEEEehhhhhcCcccCchHHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNS--------------LLSKKILLLDIALLLAGTKYRGEFEDRLKKI 76 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~--------------l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~ 76 (899)
+.+..+||+||+|+||||+|+++|+.+.....+.. -....+++++. .+..| ...++++
T Consensus 36 ~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~------~s~~~--v~~ir~l 107 (576)
T PRK14965 36 RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDG------ASNTG--VDDIREL 107 (576)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeec------cCccC--HHHHHHH
Confidence 33445699999999999999999999854221100 00112333332 11112 2346666
Q ss_pred HHHHHhc---CCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhcccccc
Q psy2887 77 LKEISNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKIL 151 (899)
Q Consensus 77 ~~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~ 151 (899)
.+.+... ....|+||||+|.|.. .+.|.|+..||. +.+++|++|+.+. .+.+.+++||..+.
T Consensus 108 ~~~~~~~p~~~~~KVvIIdev~~Lt~--------~a~naLLk~LEepp~~~~fIl~t~~~~-----kl~~tI~SRc~~~~ 174 (576)
T PRK14965 108 RENVKYLPSRSRYKIFIIDEVHMLST--------NAFNALLKTLEEPPPHVKFIFATTEPH-----KVPITILSRCQRFD 174 (576)
T ss_pred HHHHHhccccCCceEEEEEChhhCCH--------HHHHHHHHHHHcCCCCeEEEEEeCChh-----hhhHHHHHhhhhhh
Confidence 6665421 2345999999999864 578899999986 4788888888877 78899999999999
Q ss_pred ccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhh
Q psy2887 152 VEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIK 216 (899)
Q Consensus 152 l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~ 216 (899)
|..++.++...+++.++++ .++.++++++..+++.+++.+. +++.+++.+.+...
T Consensus 175 f~~l~~~~i~~~L~~i~~~----egi~i~~~al~~la~~a~G~lr------~al~~Ldqliay~g 229 (576)
T PRK14965 175 FRRIPLQKIVDRLRYIADQ----EGISISDAALALVARKGDGSMR------DSLSTLDQVLAFCG 229 (576)
T ss_pred cCCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCCHH------HHHHHHHHHHHhcc
Confidence 9999999999999888876 6788999999999999988766 88999998876653
No 250
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.41 E-value=3.7e-12 Score=131.88 Aligned_cols=154 Identities=11% Similarity=0.167 Sum_probs=111.2
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 499 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 499 (899)
+++|+||+|||||++|+++++.+...+.+++.+++....... . .....++|+|||+
T Consensus 44 ~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~----------------------~--~~~~~~~liiDdi 99 (227)
T PRK08903 44 FFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAF----------------------D--FDPEAELYAVDDV 99 (227)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHH----------------------h--hcccCCEEEEeCh
Confidence 699999999999999999999987778888888887653210 0 0123469999999
Q ss_pred cccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhcc--C
Q psy2887 500 EKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRI--D 577 (899)
Q Consensus 500 d~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~--~ 577 (899)
+.+++..+..|+.+++... .....++|++++..+. ...+.++|.+|| .
T Consensus 100 ~~l~~~~~~~L~~~~~~~~---------~~~~~~vl~~~~~~~~---------------------~~~l~~~L~sr~~~~ 149 (227)
T PRK08903 100 ERLDDAQQIALFNLFNRVR---------AHGQGALLVAGPAAPL---------------------ALPLREDLRTRLGWG 149 (227)
T ss_pred hhcCchHHHHHHHHHHHHH---------HcCCcEEEEeCCCCHH---------------------hCCCCHHHHHHHhcC
Confidence 9999999999999887511 1123356777775432 123567899998 4
Q ss_pred eEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCccccccccccc
Q psy2887 578 DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGC 639 (899)
Q Consensus 578 ~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~ 639 (899)
..+.++|++.++...++.... ...+ +.++++++++|++ .|..+++.+.+.
T Consensus 150 ~~i~l~pl~~~~~~~~l~~~~-------~~~~--v~l~~~al~~L~~---~~~gn~~~l~~~ 199 (227)
T PRK08903 150 LVYELKPLSDADKIAALKAAA-------AERG--LQLADEVPDYLLT---HFRRDMPSLMAL 199 (227)
T ss_pred eEEEecCCCHHHHHHHHHHHH-------HHcC--CCCCHHHHHHHHH---hccCCHHHHHHH
Confidence 699999999987777665433 2234 7899999999998 244455555555
No 251
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.41 E-value=3.3e-12 Score=134.46 Aligned_cols=157 Identities=19% Similarity=0.296 Sum_probs=110.1
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCc--cccc----ccchhhHHHHhCCCEE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGY--IGYE----EGGYLTEIVRRKPYSL 493 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~--~g~~----~~~~l~~~~~~~~~~v 493 (899)
++||.||||||||++|+.+|+.+ +.+++++++...... ..++|...-. .|.. ..+.+..+.+ .+.+
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l---~~~~~rV~~~~~l~~---~DliG~~~~~l~~g~~~~~f~~GpL~~A~~--~g~i 137 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARL---NWPCVRVNLDSHVSR---IDLVGKDAIVLKDGKQITEFRDGILPWALQ--HNVA 137 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHH---CCCeEEEEecCCCCh---hhcCCCceeeccCCcceeEEecCcchhHHh--CCeE
Confidence 69999999999999999999999 899999999876543 3455653211 0110 0122333322 3468
Q ss_pred EEEccccccCHHHHHHHHHhhc-CCceecC-CCceEec-CCeEEEEecCCCh-hhhhhhhcCcHHHHHHHHHHHHhhcCC
Q psy2887 494 ILLDEIEKANSDVFNILLQILD-DGRLTDN-RGRTINF-RNTIIVMTSNLGS-DKIKEMEKGDKEIIKLAVMNEVKIYFR 569 (899)
Q Consensus 494 l~lDEid~~~~~~~~~Ll~~le-~g~~~~~-~g~~~~~-~~~~iI~tsn~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~ 569 (899)
|++||++.++|++++.|..+|| ++.++.. .++.+.. .+.++|+|.|... ..-...+.. .+.++
T Consensus 138 lllDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~G-------------t~~l~ 204 (327)
T TIGR01650 138 LCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHG-------------TQQIN 204 (327)
T ss_pred EEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceee-------------eecCC
Confidence 9999999999999999999999 4677653 4666644 4778999999522 110000000 23568
Q ss_pred hhHhhccCeEEEecCCCHHHHHHHHHHH
Q psy2887 570 PEFINRIDDIIVFRYLNRKNILSIANIQ 597 (899)
Q Consensus 570 ~~l~~R~~~~i~f~~l~~~~~~~i~~~~ 597 (899)
..+++||-.++.+..++.++-.+|+...
T Consensus 205 ~A~lDRF~i~~~~~Yp~~e~E~~Il~~~ 232 (327)
T TIGR01650 205 QAQMDRWSIVTTLNYLEHDNEAAIVLAK 232 (327)
T ss_pred HHHHhheeeEeeCCCCCHHHHHHHHHhh
Confidence 8899999656789999999988887554
No 252
>PRK06893 DNA replication initiation factor; Validated
Probab=99.41 E-value=1.5e-12 Score=134.18 Aligned_cols=163 Identities=16% Similarity=0.240 Sum_probs=110.5
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 499 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 499 (899)
.++|+||||||||+|++++++.+...+.+...+++...... ...+...++ ...+|+|||+
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~------------------~~~~~~~~~--~~dlLilDDi 100 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYF------------------SPAVLENLE--QQDLVCLDDL 100 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhh------------------hHHHHhhcc--cCCEEEEeCh
Confidence 48999999999999999999998666666666655422110 001112222 3469999999
Q ss_pred cccC--HHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccC
Q psy2887 500 EKAN--SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRID 577 (899)
Q Consensus 500 d~~~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~ 577 (899)
+.+. +..+..|+.+++... .....++|+|+|..+..+.. ..|+|.+|+.
T Consensus 101 ~~~~~~~~~~~~l~~l~n~~~---------~~~~~illits~~~p~~l~~--------------------~~~~L~sRl~ 151 (229)
T PRK06893 101 QAVIGNEEWELAIFDLFNRIK---------EQGKTLLLISADCSPHALSI--------------------KLPDLASRLT 151 (229)
T ss_pred hhhcCChHHHHHHHHHHHHHH---------HcCCcEEEEeCCCChHHccc--------------------cchhHHHHHh
Confidence 9875 344567777776421 11234678889887764422 3477899883
Q ss_pred --eEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCcccccccccccHHHHHHH
Q psy2887 578 --DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSIL 646 (899)
Q Consensus 578 --~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~ 646 (899)
.++.+.+++.+++.+|+++... .++ +.++++++++|++. .-||++.....++++
T Consensus 152 ~g~~~~l~~pd~e~~~~iL~~~a~-------~~~--l~l~~~v~~~L~~~------~~~d~r~l~~~l~~l 207 (229)
T PRK06893 152 WGEIYQLNDLTDEQKIIVLQRNAY-------QRG--IELSDEVANFLLKR------LDRDMHTLFDALDLL 207 (229)
T ss_pred cCCeeeCCCCCHHHHHHHHHHHHH-------HcC--CCCCHHHHHHHHHh------ccCCHHHHHHHHHHH
Confidence 5899999999999999877663 233 88999999999982 235555544445543
No 253
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.41 E-value=4e-12 Score=136.31 Aligned_cols=179 Identities=18% Similarity=0.284 Sum_probs=109.2
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhcc----CCC--ceEEeccc-cc---
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFN----NEE--SIIRIDMS-EF--- 457 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~----~~~--~~~~~~~~-~~--- 457 (899)
..++||+++++.+..++.... .+++||.||||||||++|++++..+.. .+. .+..+.+. ..
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~---------~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~ 78 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPG---------IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHV 78 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccC---------CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccc
Confidence 567899999998876543211 137999999999999999999999821 011 11111110 00
Q ss_pred cc---------------ccchhhccCCCCCcccccccc--hhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCcee
Q psy2887 458 IE---------------KHSISRLIGAPPGYIGYEEGG--YLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLT 520 (899)
Q Consensus 458 ~~---------------~~~~~~l~g~~~~~~g~~~~~--~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~ 520 (899)
.. ......++|...-...-..++ .-.+.+..+..++||+||++.+++.+|+.|++.|++|.++
T Consensus 79 ~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~ 158 (334)
T PRK13407 79 SSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENV 158 (334)
T ss_pred cCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCeE
Confidence 00 001112333210000000000 0112233455689999999999999999999999998753
Q ss_pred -cCCCceEec-CCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCH-HHHHHHHHHH
Q psy2887 521 -DNRGRTINF-RNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNR-KNILSIANIQ 597 (899)
Q Consensus 521 -~~~g~~~~~-~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~-~~~~~i~~~~ 597 (899)
...|..... ...++|+|+|.. .+.+++.+++||...+.+.++.. ++..+|+...
T Consensus 159 v~r~G~~~~~p~rfiviAt~NP~-----------------------e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 159 VEREGLSIRHPARFVLVGSGNPE-----------------------EGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred EEECCeEEecCCCEEEEecCCcc-----------------------cCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHh
Confidence 223433333 355666666632 23478889999988888888776 7777787764
Q ss_pred H
Q psy2887 598 L 598 (899)
Q Consensus 598 l 598 (899)
.
T Consensus 216 ~ 216 (334)
T PRK13407 216 D 216 (334)
T ss_pred h
Confidence 3
No 254
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=2.8e-12 Score=145.46 Aligned_cols=173 Identities=25% Similarity=0.280 Sum_probs=125.7
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCC--cc------------CCCeEEEEehhhhhcCcccCchHHHHHHHHH
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPN--SL------------LSKKILLLDIALLLAGTKYRGEFEDRLKKIL 77 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~--~l------------~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~ 77 (899)
.+..+||+||+|+||||+|+++|+.+....... .. ....++.++.. ...| ...++.+.
T Consensus 37 l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaa------s~ig--Vd~IReIi 108 (605)
T PRK05896 37 LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAA------SNNG--VDEIRNII 108 (605)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEeccc------cccC--HHHHHHHH
Confidence 344589999999999999999999985322100 00 01233444321 1112 22466666
Q ss_pred HHHHhc---CCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhccccccc
Q psy2887 78 KEISNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILV 152 (899)
Q Consensus 78 ~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l 152 (899)
+.+... ....|++|||+|.|.. .+.+.|+..|+. +.+++|++|+... .+.+++++||..+.|
T Consensus 109 ~~~~~~P~~~~~KVIIIDEad~Lt~--------~A~NaLLKtLEEPp~~tvfIL~Tt~~~-----KLl~TI~SRcq~ieF 175 (605)
T PRK05896 109 DNINYLPTTFKYKVYIIDEAHMLST--------SAWNALLKTLEEPPKHVVFIFATTEFQ-----KIPLTIISRCQRYNF 175 (605)
T ss_pred HHHHhchhhCCcEEEEEechHhCCH--------HHHHHHHHHHHhCCCcEEEEEECCChH-----hhhHHHHhhhhhccc
Confidence 655421 2346999999999853 467889999985 4678888887776 788999999999999
Q ss_pred cCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhh
Q psy2887 153 EEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 215 (899)
Q Consensus 153 ~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~ 215 (899)
.+|+.++...+++..+.+ .++.++++++..++.++.+.++ ++..+++.++...
T Consensus 176 ~~Ls~~eL~~~L~~il~k----egi~Is~eal~~La~lS~GdlR------~AlnlLekL~~y~ 228 (605)
T PRK05896 176 KKLNNSELQELLKSIAKK----EKIKIEDNAIDKIADLADGSLR------DGLSILDQLSTFK 228 (605)
T ss_pred CCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCcHH------HHHHHHHHHHhhc
Confidence 999999999999988875 5678999999999999987655 8888888765543
No 255
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.41 E-value=2e-12 Score=139.06 Aligned_cols=107 Identities=22% Similarity=0.338 Sum_probs=79.7
Q ss_pred CEEEEEccccccccCCCCC----chhhHHHhhhhhhcC------------CceEEEEecChhHHHHhhhcCHHHHhcccc
Q psy2887 86 DIIIFIDELHTMIGTGKVE----GSIDAGNMLKPELSR------------GELHCIGATTLNEYRQYIEKDAAFERRFQK 149 (899)
Q Consensus 86 ~~iL~iDEi~~l~~~~~~~----~~~~~~~~l~~~l~~------------~~v~vI~at~~~~~~~~~~ld~al~~Rf~~ 149 (899)
.+|+||||+|.|+....+. .+..+++.|++++|. .++.||+++-.... +--++-|.|..||++
T Consensus 250 ~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~-kp~DlIPEl~GR~Pi 328 (443)
T PRK05201 250 NGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVS-KPSDLIPELQGRFPI 328 (443)
T ss_pred CCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCC-ChhhccHHHhCccce
Confidence 4699999999999764321 223477789998864 46788888764321 112567999999997
Q ss_pred -ccccCCCHHHHHHHH----Hhhhhhhhc---c--cCCCCCHHHHHHHHhhhhh
Q psy2887 150 -ILVEEPDIEETISIL----RGLQKKYEV---H--HGVEITDPAIVAASELSYR 193 (899)
Q Consensus 150 -i~l~~p~~~e~~~il----~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~ 193 (899)
+.+.+++.++...|| ..++++|.. . ..+.+++++++.+++.+..
T Consensus 329 ~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~ 382 (443)
T PRK05201 329 RVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQ 382 (443)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHH
Confidence 889999999999999 346666653 2 3358999999999998865
No 256
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.41 E-value=4.9e-12 Score=144.24 Aligned_cols=166 Identities=14% Similarity=0.296 Sum_probs=113.2
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHH-HHHHHHHHHHhcCCCEEEEE
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFED-RLKKILKEISNNQKDIIIFI 91 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~-~l~~~~~~~~~~~~~~iL~i 91 (899)
.++++|+||||+|||+|++++++++.... | +..++.+++..+. ..+...... ....+.+... ...+|+|
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~-~----~~~v~yi~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~dlLii 217 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKN-P----NAKVVYVTSEKFT--NDFVNALRNNTMEEFKEKYR---SVDVLLI 217 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC-C----CCeEEEEEHHHHH--HHHHHHHHcCcHHHHHHHHh---cCCEEEE
Confidence 35689999999999999999999985432 2 5667777776553 111111110 1122223332 2459999
Q ss_pred ccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhccc---cccccCCCHHHHHHHHHhhh
Q psy2887 92 DELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQ---KILVEEPDIEETISILRGLQ 168 (899)
Q Consensus 92 DEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~---~i~l~~p~~~e~~~il~~~~ 168 (899)
||++.+.... ....+....+....+.+..++|+++.++.. .-.+++.+.+||. .+.|++|+.+++.+|++..+
T Consensus 218 DDi~~l~~~~--~~~~~l~~~~n~l~~~~~~iiits~~~p~~--l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~ 293 (450)
T PRK00149 218 DDIQFLAGKE--RTQEEFFHTFNALHEAGKQIVLTSDRPPKE--LPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKA 293 (450)
T ss_pred ehhhhhcCCH--HHHHHHHHHHHHHHHCCCcEEEECCCCHHH--HHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHH
Confidence 9999986532 112344455556666766666666655541 1126799999995 48899999999999999888
Q ss_pred hhhhcccCCCCCHHHHHHHHhhhhhhcc
Q psy2887 169 KKYEVHHGVEITDPAIVAASELSYRYIS 196 (899)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (899)
+. .++.++++++++++..+.+.++
T Consensus 294 ~~----~~~~l~~e~l~~ia~~~~~~~R 317 (450)
T PRK00149 294 EE----EGIDLPDEVLEFIAKNITSNVR 317 (450)
T ss_pred HH----cCCCCCHHHHHHHHcCcCCCHH
Confidence 75 5788999999999988876543
No 257
>PRK06893 DNA replication initiation factor; Validated
Probab=99.41 E-value=3.5e-12 Score=131.46 Aligned_cols=154 Identities=14% Similarity=0.185 Sum_probs=103.2
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEEccc
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDEL 94 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi 94 (899)
.++|+||||||||+|++++|+++... +..+..+...... ....++++.+. ...+|+|||+
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~-------~~~~~y~~~~~~~----------~~~~~~~~~~~---~~dlLilDDi 100 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLN-------QRTAIYIPLSKSQ----------YFSPAVLENLE---QQDLVCLDDL 100 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc-------CCCeEEeeHHHhh----------hhhHHHHhhcc---cCCEEEEeCh
Confidence 47899999999999999999987543 3344445443211 01123334333 2449999999
Q ss_pred cccccCCCCCchhhHHHhhhhhhcCCceE-EEEecChhHHHHhhhcCHHHHhccc---cccccCCCHHHHHHHHHhhhhh
Q psy2887 95 HTMIGTGKVEGSIDAGNMLKPELSRGELH-CIGATTLNEYRQYIEKDAAFERRFQ---KILVEEPDIEETISILRGLQKK 170 (899)
Q Consensus 95 ~~l~~~~~~~~~~~~~~~l~~~l~~~~v~-vI~at~~~~~~~~~~ld~al~~Rf~---~i~l~~p~~~e~~~il~~~~~~ 170 (899)
+.+..+. .......+.+....+.+..+ +++++..+.. .-...+.|.+|+. .+.+++|+.+++.+|++..+..
T Consensus 101 ~~~~~~~--~~~~~l~~l~n~~~~~~~~illits~~~p~~--l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~ 176 (229)
T PRK06893 101 QAVIGNE--EWELAIFDLFNRIKEQGKTLLLISADCSPHA--LSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQ 176 (229)
T ss_pred hhhcCCh--HHHHHHHHHHHHHHHcCCcEEEEeCCCChHH--ccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHH
Confidence 9986532 11123334444444555544 4555554541 1123589999996 4889999999999999987765
Q ss_pred hhcccCCCCCHHHHHHHHhhhhhhcc
Q psy2887 171 YEVHHGVEITDPAIVAASELSYRYIS 196 (899)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (899)
.++.++++++.++++.+.+.+.
T Consensus 177 ----~~l~l~~~v~~~L~~~~~~d~r 198 (229)
T PRK06893 177 ----RGIELSDEVANFLLKRLDRDMH 198 (229)
T ss_pred ----cCCCCCHHHHHHHHHhccCCHH
Confidence 5789999999999999887554
No 258
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.41 E-value=2.2e-12 Score=140.18 Aligned_cols=182 Identities=16% Similarity=0.252 Sum_probs=120.7
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCC----ceE-Eecccccc----
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE----SII-RIDMSEFI---- 458 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~----~~~-~~~~~~~~---- 458 (899)
..++||++++..+..++...+. | +.+||+||+|+|||++|+.+|+.++.... +.. ...|....
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl-------~-ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~ 94 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKL-------H-HALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQ 94 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCC-------C-eeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHH
Confidence 5688999999999999986542 2 25999999999999999999999965211 110 00110100
Q ss_pred --cc-cchhhccCCC--------CCcccccccchhhHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCC
Q psy2887 459 --EK-HSISRLIGAP--------PGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNR 523 (899)
Q Consensus 459 --~~-~~~~~l~g~~--------~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~ 523 (899)
.. +.--..+..+ ...++.++.+.+.+.+.. ..+.|++|||+|.+++..+|.||+.||+
T Consensus 95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEE------- 167 (351)
T PRK09112 95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE------- 167 (351)
T ss_pred HHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhc-------
Confidence 00 0000001110 011222333444444443 3467999999999999999999999998
Q ss_pred CceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHH
Q psy2887 524 GRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKN 603 (899)
Q Consensus 524 g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~ 603 (899)
+..+++||+.|+.... +.|.+.+|| ..+.|.|++.+++.+++....
T Consensus 168 ----pp~~~~fiLit~~~~~------------------------llptIrSRc-~~i~l~pl~~~~~~~~L~~~~----- 213 (351)
T PRK09112 168 ----PPARALFILISHSSGR------------------------LLPTIRSRC-QPISLKPLDDDELKKALSHLG----- 213 (351)
T ss_pred ----CCCCceEEEEECChhh------------------------ccHHHHhhc-cEEEecCCCHHHHHHHHHHhh-----
Confidence 3467777777765332 457789999 899999999999999876521
Q ss_pred HHHhcCcceeecHHHHHHHHh
Q psy2887 604 KLLKMNMDLKISKAALKKISN 624 (899)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~L~~ 624 (899)
....+++++...+.+
T Consensus 214 ------~~~~~~~~~~~~i~~ 228 (351)
T PRK09112 214 ------SSQGSDGEITEALLQ 228 (351)
T ss_pred ------cccCCCHHHHHHHHH
Confidence 112267888877776
No 259
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=99.40 E-value=1.1e-12 Score=138.76 Aligned_cols=148 Identities=22% Similarity=0.341 Sum_probs=104.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCcccccccccccHHHHHHHHHHhhccCCccceeecc
Q psy2887 584 YLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLG 663 (899)
Q Consensus 584 ~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~G 663 (899)
.++.+++.+++.....-+ ..+..-+.+ ..+...+|||||++..|.++++..++. +.+.++|+|
T Consensus 31 ~l~~~~i~~l~~~~~~il----~~ep~ll~i------------~~~i~vvGDIHG~~~dL~~l~~~~g~~-~~~~ylfLG 93 (320)
T PTZ00480 31 NLTEAEVRGLCIKARDIF----ISQPILLEL------------EAPLKICGDVHGQYFDLLRLFEYGGYP-PESNYLFLG 93 (320)
T ss_pred CCCHHHHHHHHHHHHHHH----HhCCceEec------------CCCeEEEeecccCHHHHHHHHHhcCCC-CcceEEEec
Confidence 467788877765554333 323211222 134567899999999999999888874 567899999
Q ss_pred ccCCCCceEehhHHHHHhc----CCccEEEccCChHhHHhHhhhcccCchhchHHHhhCCcChHHHHHHHhcCCce-EEe
Q psy2887 664 DLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLA-IYY 738 (899)
Q Consensus 664 D~~d~g~~~~~~~~~l~~~----~~~~~~v~GNHe~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~-~~~ 738 (899)
|++|||+.+++++.+++.+ ..++.++|||||...+....+....-. ..+ .......+...+..||+. +..
T Consensus 94 DyVDRG~~s~evl~ll~~lki~~p~~v~llRGNHE~~~~~~~ygF~~e~~----~~y-~~~l~~~~~~~F~~LPlaAiI~ 168 (320)
T PTZ00480 94 DYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECK----RRY-TIKLWKTFTDCFNCLPVAALID 168 (320)
T ss_pred eecCCCCCcHHHHHHHHHhcccCCCceEEEecccchhhhhhhcchHHHHH----hhc-CHHHHHHHHHHHHhccHhheec
Confidence 9999999999999999876 347899999999987765443221100 000 111235677888999999 455
Q ss_pred CCEEEEecccccccc
Q psy2887 739 KKYLMIHAGVAKQWT 753 (899)
Q Consensus 739 ~~~~~vHAg~~~~~~ 753 (899)
+++++||||++|...
T Consensus 169 ~~i~cvHGGI~p~~~ 183 (320)
T PTZ00480 169 EKILCMHGGLSPELS 183 (320)
T ss_pred CcEEEEcCCcCcccC
Confidence 689999999998643
No 260
>PRK05642 DNA replication initiation factor; Validated
Probab=99.40 E-value=4.7e-12 Score=130.82 Aligned_cols=156 Identities=17% Similarity=0.205 Sum_probs=111.4
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEEc
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFID 92 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~iD 92 (899)
.++++|+||+|||||+|++++++++... +..++.++...+... ...+++.+...+ +|+||
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~-------~~~v~y~~~~~~~~~----------~~~~~~~~~~~d---~LiiD 104 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQR-------GEPAVYLPLAELLDR----------GPELLDNLEQYE---LVCLD 104 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCcEEEeeHHHHHhh----------hHHHHHhhhhCC---EEEEe
Confidence 3678999999999999999999887432 456677777665421 123333343222 89999
Q ss_pred cccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhccc---cccccCCCHHHHHHHHHhhhh
Q psy2887 93 ELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQ---KILVEEPDIEETISILRGLQK 169 (899)
Q Consensus 93 Ei~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~---~i~l~~p~~~e~~~il~~~~~ 169 (899)
|++.+.... .........+....+++..++|++++.+.. .....|.|.+||. .+.+.+|+.+++.++++....
T Consensus 105 Di~~~~~~~--~~~~~Lf~l~n~~~~~g~~ilits~~~p~~--l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~ 180 (234)
T PRK05642 105 DLDVIAGKA--DWEEALFHLFNRLRDSGRRLLLAASKSPRE--LPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRAS 180 (234)
T ss_pred chhhhcCCh--HHHHHHHHHHHHHHhcCCEEEEeCCCCHHH--cCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHH
Confidence 999885432 112335555555667778888887776652 2234799999994 588999999999999986544
Q ss_pred hhhcccCCCCCHHHHHHHHhhhhhhcc
Q psy2887 170 KYEVHHGVEITDPAIVAASELSYRYIS 196 (899)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (899)
. .++.+++++++++++.+.+...
T Consensus 181 ~----~~~~l~~ev~~~L~~~~~~d~r 203 (234)
T PRK05642 181 R----RGLHLTDEVGHFILTRGTRSMS 203 (234)
T ss_pred H----cCCCCCHHHHHHHHHhcCCCHH
Confidence 3 4688999999999999887554
No 261
>KOG0744|consensus
Probab=99.40 E-value=9e-13 Score=133.06 Aligned_cols=143 Identities=26% Similarity=0.375 Sum_probs=98.5
Q ss_pred EEEEecCCCChHHHHHHHHHHHhc-c-----CCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCE-
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIF-N-----NEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYS- 492 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~-~-----~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~- 492 (899)
-+|++||||||||+|+|++|+.|- + ....++.+++..+.++ .|+.....+..- -.++.+.++. +++
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSK-----WFsESgKlV~km-F~kI~ELv~d-~~~l 251 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSK-----WFSESGKLVAKM-FQKIQELVED-RGNL 251 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHH-----HHhhhhhHHHHH-HHHHHHHHhC-CCcE
Confidence 489999999999999999999981 1 1234566666555443 222211000000 0122233333 333
Q ss_pred -EEEEccccccCH---------------HHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHH
Q psy2887 493 -LILLDEIEKANS---------------DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEII 556 (899)
Q Consensus 493 -vl~lDEid~~~~---------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~ 556 (899)
.++|||++++.. ++.|+||+.||.-+ ...|++|.+|||..
T Consensus 252 VfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK---------~~~NvliL~TSNl~--------------- 307 (423)
T KOG0744|consen 252 VFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK---------RYPNVLILATSNLT--------------- 307 (423)
T ss_pred EEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc---------cCCCEEEEeccchH---------------
Confidence 678999997652 58999999999622 45788999999953
Q ss_pred HHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHH
Q psy2887 557 KLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILK 602 (899)
Q Consensus 557 ~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~ 602 (899)
..++.+|.+|-|.+..+.||+.+.+.+|++..+..+.
T Consensus 308 ---------~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~ 344 (423)
T KOG0744|consen 308 ---------DSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELI 344 (423)
T ss_pred ---------HHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHH
Confidence 3356679999999999999999999999998887654
No 262
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.40 E-value=5.7e-12 Score=144.08 Aligned_cols=217 Identities=14% Similarity=0.142 Sum_probs=146.8
Q ss_pred hhccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhcc-------CCCceEEecccccc
Q psy2887 386 LCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFN-------NEESIIRIDMSEFI 458 (899)
Q Consensus 386 l~~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~-------~~~~~~~~~~~~~~ 458 (899)
....+.|.+.-++.|...+.....+. .|...++++|+||||||++++.+.+.+-. ....++.+||..+.
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkgs----gpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Ls 828 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQS----GSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVV 828 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhcC----CCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccC
Confidence 34678899999999999998765431 23224679999999999999999887721 12457899997766
Q ss_pred cccchh-----hccCCCCCccccccc---chhhHHHHh--CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEe
Q psy2887 459 EKHSIS-----RLIGAPPGYIGYEEG---GYLTEIVRR--KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTIN 528 (899)
Q Consensus 459 ~~~~~~-----~l~g~~~~~~g~~~~---~~l~~~~~~--~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~ 528 (899)
....+. .+++..+ ..|.... ..++..+.. ....||+|||||.+....+..|+.+++--.. .
T Consensus 829 tp~sIYqvI~qqL~g~~P-~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~--------s 899 (1164)
T PTZ00112 829 HPNAAYQVLYKQLFNKKP-PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTK--------I 899 (1164)
T ss_pred CHHHHHHHHHHHHcCCCC-CccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhc--------c
Confidence 544332 2334433 2222211 223333222 2245999999999988778888888874111 1
Q ss_pred cCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCe-EEEecCCCHHHHHHHHHHHHHHHHHHHHh
Q psy2887 529 FRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNRKNILSIANIQLNILKNKLLK 607 (899)
Q Consensus 529 ~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~~~~~~~i~~~~l~~~~~~~~~ 607 (899)
...+++|+++|.- + +...+.|.+.+||.. .+.|+||+.+++.+|+...+...
T Consensus 900 ~SKLiLIGISNdl-D--------------------LperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A------ 952 (1164)
T PTZ00112 900 NSKLVLIAISNTM-D--------------------LPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC------ 952 (1164)
T ss_pred CCeEEEEEecCch-h--------------------cchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhC------
Confidence 2456788888831 1 122355678888853 58999999999999998887541
Q ss_pred cCcceeecHHHHHHHHhcccCcccccccccccHHHHHHHHH
Q psy2887 608 MNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLK 648 (899)
Q Consensus 608 ~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l~ 648 (899)
...++++|++++++... ..-||++..++.|+.+++
T Consensus 953 ---~gVLdDdAIELIArkVA---q~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 953 ---KEIIDHTAIQLCARKVA---NVSGDIRKALQICRKAFE 987 (1164)
T ss_pred ---CCCCCHHHHHHHHHhhh---hcCCHHHHHHHHHHHHHh
Confidence 13589999999988433 224899999888888774
No 263
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.40 E-value=1.1e-11 Score=139.21 Aligned_cols=165 Identities=16% Similarity=0.206 Sum_probs=108.9
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEEc
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFID 92 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~iD 92 (899)
.++++|+||||+|||+|++++++.+... +..++.+....+.. .........-.+.|.... ....+|+||
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~-------~~~v~yi~~~~f~~--~~~~~l~~~~~~~f~~~~--~~~dvLiID 209 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRES-------GGKILYVRSELFTE--HLVSAIRSGEMQRFRQFY--RNVDALFIE 209 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHc-------CCCEEEeeHHHHHH--HHHHHHhcchHHHHHHHc--ccCCEEEEc
Confidence 3579999999999999999999988543 56677776654431 111111000011222221 224499999
Q ss_pred cccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhccc---cccccCCCHHHHHHHHHhhhh
Q psy2887 93 ELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQ---KILVEEPDIEETISILRGLQK 169 (899)
Q Consensus 93 Ei~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~---~i~l~~p~~~e~~~il~~~~~ 169 (899)
|++.+.+.. ....+....+....+.+..+++++++++.. ...+++.|.+||. .+.+++|+.+++.+||+..++
T Consensus 210 Diq~l~~k~--~~qeelf~l~N~l~~~~k~IIlts~~~p~~--l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~ 285 (445)
T PRK12422 210 DIEVFSGKG--ATQEEFFHTFNSLHTEGKLIVISSTCAPQD--LKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAE 285 (445)
T ss_pred chhhhcCCh--hhHHHHHHHHHHHHHCCCcEEEecCCCHHH--HhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHH
Confidence 999986532 122334444444555666555555554431 2257899999995 488999999999999998877
Q ss_pred hhhcccCCCCCHHHHHHHHhhhhhhcc
Q psy2887 170 KYEVHHGVEITDPAIVAASELSYRYIS 196 (899)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (899)
. .++.++++++.+++....+.++
T Consensus 286 ~----~~~~l~~evl~~la~~~~~dir 308 (445)
T PRK12422 286 A----LSIRIEETALDFLIEALSSNVK 308 (445)
T ss_pred H----cCCCCCHHHHHHHHHhcCCCHH
Confidence 6 5688999999999887765443
No 264
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.40 E-value=1.2e-11 Score=140.45 Aligned_cols=165 Identities=13% Similarity=0.188 Sum_probs=110.2
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHH-HHHHHHHHHHhcCCCEEEEE
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFED-RLKKILKEISNNQKDIIIFI 91 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~-~l~~~~~~~~~~~~~~iL~i 91 (899)
.+.++|+|++|+|||+|++++++.+.... .+..++.+.+..+.. .+...... .+..+.+... ...+|+|
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~-----~g~~V~Yitaeef~~--el~~al~~~~~~~f~~~y~---~~DLLlI 383 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLY-----PGTRVRYVSSEEFTN--EFINSIRDGKGDSFRRRYR---EMDILLV 383 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhC-----CCCeEEEeeHHHHHH--HHHHHHHhccHHHHHHHhh---cCCEEEE
Confidence 34589999999999999999999875321 156777787765541 11111111 1112222222 2459999
Q ss_pred ccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhcccc---ccccCCCHHHHHHHHHhhh
Q psy2887 92 DELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQK---ILVEEPDIEETISILRGLQ 168 (899)
Q Consensus 92 DEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~---i~l~~p~~~e~~~il~~~~ 168 (899)
||++.+..+. .....+.+.+....+.++.+||.+...+. ..-.+++.|.+||.. +.+..|+.+.|.+||+...
T Consensus 384 DDIq~l~gke--~tqeeLF~l~N~l~e~gk~IIITSd~~P~--eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 384 DDIQFLEDKE--STQEEFFHTFNTLHNANKQIVLSSDRPPK--QLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred ehhccccCCH--HHHHHHHHHHHHHHhcCCCEEEecCCChH--hhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 9999986533 11234555666666666555554433332 122578999999973 7899999999999999877
Q ss_pred hhhhcccCCCCCHHHHHHHHhhhhhhc
Q psy2887 169 KKYEVHHGVEITDPAIVAASELSYRYI 195 (899)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (899)
.. .++.++++++.+++....+.+
T Consensus 460 ~~----r~l~l~~eVi~yLa~r~~rnv 482 (617)
T PRK14086 460 VQ----EQLNAPPEVLEFIASRISRNI 482 (617)
T ss_pred Hh----cCCCCCHHHHHHHHHhccCCH
Confidence 65 578999999999988876644
No 265
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.39 E-value=1.5e-11 Score=142.30 Aligned_cols=172 Identities=21% Similarity=0.243 Sum_probs=126.1
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCc-----------cCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHH
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNS-----------LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEI 80 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~-----------l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~ 80 (899)
-...+||+||+|+|||++|+++|+.+........ -....++.++. .+..| ...++++.+.+
T Consensus 39 l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieida------asn~~--vd~IReLie~~ 110 (725)
T PRK07133 39 ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDA------ASNNG--VDEIRELIENV 110 (725)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEec------cccCC--HHHHHHHHHHH
Confidence 3444699999999999999999998854321100 00112222221 11112 33467777766
Q ss_pred Hhc---CCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhccccccccCC
Q psy2887 81 SNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEP 155 (899)
Q Consensus 81 ~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p 155 (899)
... +...|++|||+|.|.. .+.+.|+..|+. +.+++|++|+.+. .+.+++++||..+.|.+|
T Consensus 111 ~~~P~~g~~KV~IIDEa~~LT~--------~A~NALLKtLEEPP~~tifILaTte~~-----KLl~TI~SRcq~ieF~~L 177 (725)
T PRK07133 111 KNLPTQSKYKIYIIDEVHMLSK--------SAFNALLKTLEEPPKHVIFILATTEVH-----KIPLTILSRVQRFNFRRI 177 (725)
T ss_pred HhchhcCCCEEEEEEChhhCCH--------HHHHHHHHHhhcCCCceEEEEEcCChh-----hhhHHHHhhceeEEccCC
Confidence 522 3456999999999864 578889999986 4688888888776 788999999999999999
Q ss_pred CHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 156 DIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 156 ~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
+.++...+++..+.+ .++.++++++..++.++.+.++ .+..+++.++..
T Consensus 178 ~~eeI~~~L~~il~k----egI~id~eAl~~LA~lS~GslR------~AlslLekl~~y 226 (725)
T PRK07133 178 SEDEIVSRLEFILEK----ENISYEKNALKLIAKLSSGSLR------DALSIAEQVSIF 226 (725)
T ss_pred CHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHH------HHHHHHHHHHHh
Confidence 999999999987776 4688999999999999987655 888888876643
No 266
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.39 E-value=7.9e-12 Score=141.21 Aligned_cols=174 Identities=22% Similarity=0.256 Sum_probs=128.5
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCC--------------ccCCCeEEEEehhhhhcCcccCchHHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPN--------------SLLSKKILLLDIALLLAGTKYRGEFEDRLKKI 76 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~--------------~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~ 76 (899)
+-+..+||+||+|+|||++|+++|+.+.....+. ...+..++.++.. ...| ...++++
T Consensus 34 rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaa------s~~g--Id~IRel 105 (535)
T PRK08451 34 RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAA------SNRG--IDDIREL 105 (535)
T ss_pred CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccc------cccC--HHHHHHH
Confidence 3344459999999999999999999985422111 0112234433321 1111 2356666
Q ss_pred HHHHHhc---CCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhcccccc
Q psy2887 77 LKEISNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKIL 151 (899)
Q Consensus 77 ~~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~ 151 (899)
+..+... +...|++|||+|.|.. ++.+.|+..|+. ..+.+|++|+.+. .+.+++++|+..+.
T Consensus 106 ie~~~~~P~~~~~KVvIIDEad~Lt~--------~A~NALLK~LEEpp~~t~FIL~ttd~~-----kL~~tI~SRc~~~~ 172 (535)
T PRK08451 106 IEQTKYKPSMARFKIFIIDEVHMLTK--------EAFNALLKTLEEPPSYVKFILATTDPL-----KLPATILSRTQHFR 172 (535)
T ss_pred HHHHhhCcccCCeEEEEEECcccCCH--------HHHHHHHHHHhhcCCceEEEEEECChh-----hCchHHHhhceeEE
Confidence 6654311 3346999999999954 678899999986 5678888887765 78899999999999
Q ss_pred ccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhh
Q psy2887 152 VEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 215 (899)
Q Consensus 152 l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~ 215 (899)
|.+++.++...+++.+++. .++.++++++..++..+.+.+. ++..+++.++...
T Consensus 173 F~~Ls~~ei~~~L~~Il~~----EGi~i~~~Al~~Ia~~s~GdlR------~alnlLdqai~~~ 226 (535)
T PRK08451 173 FKQIPQNSIISHLKTILEK----EGVSYEPEALEILARSGNGSLR------DTLTLLDQAIIYC 226 (535)
T ss_pred cCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCcHH------HHHHHHHHHHHhc
Confidence 9999999999999988876 5788999999999999987665 8899998887654
No 267
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.39 E-value=3.3e-12 Score=137.31 Aligned_cols=178 Identities=19% Similarity=0.283 Sum_probs=109.0
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccC----CC--------c-eEEecc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN----EE--------S-IIRIDM 454 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~----~~--------~-~~~~~~ 454 (899)
..|+||++++..+..++.... .+++++.|+||+|||+++++++..+... +. + +++.+|
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~---------~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPK---------IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEV 74 (337)
T ss_pred cccccHHHHHHHHHHHhcCCC---------CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHH
Confidence 468899999998876665322 2379999999999999999999988210 00 0 011111
Q ss_pred cc-------------------cccccchhhccCCCCCcccccccc--hhhHHHHhCCCEEEEEccccccCHHHHHHHHHh
Q psy2887 455 SE-------------------FIEKHSISRLIGAPPGYIGYEEGG--YLTEIVRRKPYSLILLDEIEKANSDVFNILLQI 513 (899)
Q Consensus 455 ~~-------------------~~~~~~~~~l~g~~~~~~g~~~~~--~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~ 513 (899)
.. +.......+++|...-...-..+. .-.+.+.++.+++||+||++.+++.+|+.|+++
T Consensus 75 r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~ 154 (337)
T TIGR02030 75 RIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDV 154 (337)
T ss_pred hhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHH
Confidence 11 000001112333211000000010 011234455568999999999999999999999
Q ss_pred hcCCcee-cCCCceEec-CCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCH-HHH
Q psy2887 514 LDDGRLT-DNRGRTINF-RNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNR-KNI 590 (899)
Q Consensus 514 le~g~~~-~~~g~~~~~-~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~-~~~ 590 (899)
|++|..+ ...|..... .+.++|+|.|.. .+.|+++|++||...+.+.++.. ++.
T Consensus 155 l~~g~~~v~r~G~~~~~~~r~iviat~np~-----------------------eg~l~~~LldRf~l~i~l~~p~~~eer 211 (337)
T TIGR02030 155 AASGWNVVEREGISIRHPARFVLVGSGNPE-----------------------EGELRPQLLDRFGLHAEIRTVRDVELR 211 (337)
T ss_pred HHhCCeEEEECCEEEEcCCCEEEEeccccc-----------------------cCCCCHHHHhhcceEEECCCCCCHHHH
Confidence 9998633 223433333 345556665531 23589999999998888888876 777
Q ss_pred HHHHHHH
Q psy2887 591 LSIANIQ 597 (899)
Q Consensus 591 ~~i~~~~ 597 (899)
.+|+...
T Consensus 212 ~eIL~~~ 218 (337)
T TIGR02030 212 VEIVERR 218 (337)
T ss_pred HHHHHhh
Confidence 7787764
No 268
>PRK05642 DNA replication initiation factor; Validated
Probab=99.39 E-value=6.9e-12 Score=129.57 Aligned_cols=147 Identities=14% Similarity=0.259 Sum_probs=108.4
Q ss_pred eEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEcc
Q psy2887 419 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDE 498 (899)
Q Consensus 419 ~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDE 498 (899)
.+++|+||+|||||+|++++++.+...+..+++++..++.... ..+.+.++.. .+|+||+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~------------------~~~~~~~~~~--d~LiiDD 105 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG------------------PELLDNLEQY--ELVCLDD 105 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh------------------HHHHHhhhhC--CEEEEec
Confidence 3689999999999999999999886666778888776654320 1233334433 4999999
Q ss_pred ccccC--HHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhcc
Q psy2887 499 IEKAN--SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRI 576 (899)
Q Consensus 499 id~~~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~ 576 (899)
++... +..+..|+.+++.- ..++..+|+|++..+..+. .+.|+|.+||
T Consensus 106 i~~~~~~~~~~~~Lf~l~n~~----------~~~g~~ilits~~~p~~l~--------------------~~~~~L~SRl 155 (234)
T PRK05642 106 LDVIAGKADWEEALFHLFNRL----------RDSGRRLLLAASKSPRELP--------------------IKLPDLKSRL 155 (234)
T ss_pred hhhhcCChHHHHHHHHHHHHH----------HhcCCEEEEeCCCCHHHcC--------------------ccCccHHHHH
Confidence 99775 45567788888741 1234568888887776432 2468899999
Q ss_pred C--eEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHh
Q psy2887 577 D--DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISN 624 (899)
Q Consensus 577 ~--~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 624 (899)
. .++.+.+++.+++..+++.... ..+ +.++++++++|++
T Consensus 156 ~~gl~~~l~~~~~e~~~~il~~ka~-------~~~--~~l~~ev~~~L~~ 196 (234)
T PRK05642 156 TLALVFQMRGLSDEDKLRALQLRAS-------RRG--LHLTDEVGHFILT 196 (234)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHH-------HcC--CCCCHHHHHHHHH
Confidence 4 6888999999999999875442 223 7899999999998
No 269
>KOG0651|consensus
Probab=99.39 E-value=9.3e-13 Score=132.40 Aligned_cols=157 Identities=22% Similarity=0.398 Sum_probs=112.1
Q ss_pred ccCCChHHHHHHHHHHHHHh--------hcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 459 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~--------~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 459 (899)
..+.|....+..++..+... +.++..| -.++||||||||||.+|+++|..+ +.+|+.+..+++.+
T Consensus 132 ~~~ggl~~qirelre~ielpl~np~lf~rvgIk~P----kg~ll~GppGtGKTlla~~Vaa~m---g~nfl~v~ss~lv~ 204 (388)
T KOG0651|consen 132 ENVGGLFYQIRELREVIELPLTNPELFLRVGIKPP----KGLLLYGPPGTGKTLLARAVAATM---GVNFLKVVSSALVD 204 (388)
T ss_pred HHhCChHHHHHHHHhheEeeccCchhccccCCCCC----ceeEEeCCCCCchhHHHHHHHHhc---CCceEEeeHhhhhh
Confidence 45667777777777766332 2233333 259999999999999999999999 99999998888876
Q ss_pred ccchhhccCCCCCccccccc--chhhHHHHhCCCEEEEEcccccc-----------CHHHHHHHHHhhcCCceecCCCce
Q psy2887 460 KHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKA-----------NSDVFNILLQILDDGRLTDNRGRT 526 (899)
Q Consensus 460 ~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~-----------~~~~~~~Ll~~le~g~~~~~~g~~ 526 (899)
. |+|+... +..+..++...+||||+||||.. +..+|.+|..+++.-.-.|
T Consensus 205 k------------yiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd----- 267 (388)
T KOG0651|consen 205 K------------YIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFD----- 267 (388)
T ss_pred h------------hcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccch-----
Confidence 5 6776554 55566667777899999999844 3468888888877411111
Q ss_pred EecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHh--hccCeEEEecCCCHHHHHHH
Q psy2887 527 INFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSI 593 (899)
Q Consensus 527 ~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~~~~~~i 593 (899)
...++-+|||+|.+.. +.|+|+ +|+|..+..+-++......|
T Consensus 268 -~l~rVk~ImatNrpdt------------------------LdpaLlRpGRldrk~~iPlpne~~r~~I 311 (388)
T KOG0651|consen 268 -TLHRVKTIMATNRPDT------------------------LDPALLRPGRLDRKVEIPLPNEQARLGI 311 (388)
T ss_pred -hcccccEEEecCCccc------------------------cchhhcCCccccceeccCCcchhhceee
Confidence 2356679999997654 566666 78888888876665554443
No 270
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.38 E-value=6.6e-12 Score=137.18 Aligned_cols=153 Identities=20% Similarity=0.267 Sum_probs=107.0
Q ss_pred CCeEE-EcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEEc
Q psy2887 14 SNPVL-IGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFID 92 (899)
Q Consensus 14 ~~iLL-~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~iD 92 (899)
+|++| +||||+|||++|+++++.+ +.+++.+++.. . . .......+............+.||+||
T Consensus 43 ~~~lll~G~~G~GKT~la~~l~~~~----------~~~~~~i~~~~-~--~--~~~i~~~l~~~~~~~~~~~~~~vliiD 107 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKALCNEV----------GAEVLFVNGSD-C--R--IDFVRNRLTRFASTVSLTGGGKVIIID 107 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHh----------CccceEeccCc-c--c--HHHHHHHHHHHHHhhcccCCCeEEEEE
Confidence 34555 8999999999999999987 55666666543 1 1 111112222222222112346799999
Q ss_pred cccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHHHHHHHHHhhhhh
Q psy2887 93 ELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKK 170 (899)
Q Consensus 93 Ei~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~il~~~~~~ 170 (899)
|+|.+.. .+..+.|...++. +...+|++||... .+.+++++||..+.++.|+.+++..|++.+...
T Consensus 108 e~d~l~~-------~~~~~~L~~~le~~~~~~~~Ilt~n~~~-----~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~ 175 (316)
T PHA02544 108 EFDRLGL-------ADAQRHLRSFMEAYSKNCSFIITANNKN-----GIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVR 175 (316)
T ss_pred CcccccC-------HHHHHHHHHHHHhcCCCceEEEEcCChh-----hchHHHHhhceEEEeCCCCHHHHHHHHHHHHHH
Confidence 9998832 1344566776763 5678888988776 789999999999999999999999888776554
Q ss_pred hh---cccCCCCCHHHHHHHHhhhhh
Q psy2887 171 YE---VHHGVEITDPAIVAASELSYR 193 (899)
Q Consensus 171 ~~---~~~~~~~~~~~~~~~~~~~~~ 193 (899)
.. ...++.++++++..+++.+.+
T Consensus 176 ~~~~~~~~~~~i~~~al~~l~~~~~~ 201 (316)
T PHA02544 176 CKGILEAEGVEVDMKVLAALVKKNFP 201 (316)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHhcCC
Confidence 32 246788999999888876654
No 271
>KOG0732|consensus
Probab=99.38 E-value=3.3e-12 Score=149.77 Aligned_cols=179 Identities=21% Similarity=0.335 Sum_probs=128.2
Q ss_pred ccCCChHHHHHHHHHHHHHh--------hcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCC--ceEEeccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE--SIIRIDMSEF 457 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~--------~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~--~~~~~~~~~~ 457 (899)
..|.|.+.++..+.+.+-.. ..++.+|+ .+||+||||||||.+|+++|..+-..+. .|..-++++.
T Consensus 265 d~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPr----gvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~ 340 (1080)
T KOG0732|consen 265 DSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPR----GVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADC 340 (1080)
T ss_pred cccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCc----ceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchh
Confidence 56778888888887776321 23444444 4999999999999999999999843322 2333344444
Q ss_pred ccccchhhccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccCH-----------HHHHHHHHhhcCCceecCCC
Q psy2887 458 IEKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS-----------DVFNILLQILDDGRLTDNRG 524 (899)
Q Consensus 458 ~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~-----------~~~~~Ll~~le~g~~~~~~g 524 (899)
.++ |+|..+. +.+|+.++...++|+||||||-++| .+...||.+|+.- +
T Consensus 341 lsk------------wvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGl---d--- 402 (1080)
T KOG0732|consen 341 LSK------------WVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGL---D--- 402 (1080)
T ss_pred hcc------------ccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCC---C---
Confidence 333 7887776 6788888999999999999996665 5789999999862 1
Q ss_pred ceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhH--hhccCeEEEecCCCHHHHHHHHHHHHHHHH
Q psy2887 525 RTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEF--INRIDDIIVFRYLNRKNILSIANIQLNILK 602 (899)
Q Consensus 525 ~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l--~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~ 602 (899)
....+++|-+||.+.. +.|+| -+|||..+.|+-++.++..+|+..+-
T Consensus 403 ---sRgqVvvigATnRpda------------------------~dpaLRRPgrfdref~f~lp~~~ar~~Il~Iht---- 451 (1080)
T KOG0732|consen 403 ---SRGQVVVIGATNRPDA------------------------IDPALRRPGRFDREFYFPLPDVDARAKILDIHT---- 451 (1080)
T ss_pred ---CCCceEEEcccCCccc------------------------cchhhcCCcccceeEeeeCCchHHHHHHHHHhc----
Confidence 2356778888887554 56667 48999999999999999999976443
Q ss_pred HHHHhcCcceeecHHHHHHHHh
Q psy2887 603 NKLLKMNMDLKISKAALKKISN 624 (899)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~L~~ 624 (899)
......++......|++
T Consensus 452 -----rkw~~~i~~~l~~~la~ 468 (1080)
T KOG0732|consen 452 -----RKWEPPISRELLLWLAE 468 (1080)
T ss_pred -----cCCCCCCCHHHHHHHHH
Confidence 22224455555555555
No 272
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.38 E-value=1e-11 Score=123.91 Aligned_cols=176 Identities=18% Similarity=0.303 Sum_probs=125.9
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhcc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 467 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (899)
..++|.+..++.|.........| .|..++||+|+.|||||+++|++...+...+..++.+.-..+.+-
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G-----~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l------- 94 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQG-----LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDL------- 94 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcC-----CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccH-------
Confidence 56779999999998888877766 455689999999999999999999999888888888877665432
Q ss_pred CCCCCcccccccchhhHHHHhCCCE-EEEEcccc-ccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCCh---
Q psy2887 468 GAPPGYIGYEEGGYLTEIVRRKPYS-LILLDEIE-KANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGS--- 542 (899)
Q Consensus 468 g~~~~~~g~~~~~~l~~~~~~~~~~-vl~lDEid-~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~--- 542 (899)
..+...++..+.. |||+|++. .........|-.+||.|-.. ...|++|.+|||...
T Consensus 95 ------------~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~-------~P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 95 ------------PELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEA-------RPDNVLIYATSNRRHLVP 155 (249)
T ss_pred ------------HHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCcccc-------CCCcEEEEEecchhhccc
Confidence 1355566656555 99999976 23344567888888865322 468999999999632
Q ss_pred hhhhhhhc--CcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHH
Q psy2887 543 DKIKEMEK--GDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNI 600 (899)
Q Consensus 543 ~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~ 600 (899)
+.+.+..+ ++..-..+.+.+.++ |.+||...|.|.|++.++..+|++.++++
T Consensus 156 E~~~d~~~~~~~eih~~d~~eEklS------LsDRFGL~l~F~~~~q~~YL~IV~~~~~~ 209 (249)
T PF05673_consen 156 ESFSDREDIQDDEIHPSDTIEEKLS------LSDRFGLWLSFYPPDQEEYLAIVRHYAER 209 (249)
T ss_pred hhhhhccCCCccccCcchHHHHHHh------HHHhCCcEEEecCCCHHHHHHHHHHHHHH
Confidence 11111111 000011223333332 88999999999999999999999988843
No 273
>KOG0743|consensus
Probab=99.37 E-value=1.6e-12 Score=138.72 Aligned_cols=133 Identities=19% Similarity=0.232 Sum_probs=99.9
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
.-+++.|||||||||||+++.|+|+.+ +..++.++++.+.. +.+ ++.++.... ..+||+
T Consensus 233 awKRGYLLYGPPGTGKSS~IaAmAn~L----------~ydIydLeLt~v~~------n~d--Lr~LL~~t~---~kSIiv 291 (457)
T KOG0743|consen 233 AWKRGYLLYGPPGTGKSSFIAAMANYL----------NYDIYDLELTEVKL------DSD--LRHLLLATP---NKSILL 291 (457)
T ss_pred chhccceeeCCCCCCHHHHHHHHHhhc----------CCceEEeeeccccC------cHH--HHHHHHhCC---CCcEEE
Confidence 345689999999999999999999999 99999888765442 222 888877653 467999
Q ss_pred EccccccccCCCCC-----chh-----hHHHhhhhhh----cC--CceEEEEecChhHHHHhhhcCHHHHh--cccc-cc
Q psy2887 91 IDELHTMIGTGKVE-----GSI-----DAGNMLKPEL----SR--GELHCIGATTLNEYRQYIEKDAAFER--RFQK-IL 151 (899)
Q Consensus 91 iDEi~~l~~~~~~~-----~~~-----~~~~~l~~~l----~~--~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~ 151 (899)
|++||.-+..+... +.+ -...=|+..+ .. +.-++|+|||..+ .+||||+| |++. |+
T Consensus 292 IEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E-----kLDPALlRpGRmDmhI~ 366 (457)
T KOG0743|consen 292 IEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE-----KLDPALLRPGRMDMHIY 366 (457)
T ss_pred EeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh-----hcCHhhcCCCcceeEEE
Confidence 99999876532211 111 1112233333 22 3678899999999 99999999 9997 99
Q ss_pred ccCCCHHHHHHHHHhhhh
Q psy2887 152 VEEPDIEETISILRGLQK 169 (899)
Q Consensus 152 l~~p~~~e~~~il~~~~~ 169 (899)
+...+.+.-..++.+++.
T Consensus 367 mgyCtf~~fK~La~nYL~ 384 (457)
T KOG0743|consen 367 MGYCTFEAFKTLASNYLG 384 (457)
T ss_pred cCCCCHHHHHHHHHHhcC
Confidence 999999988888887775
No 274
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.37 E-value=2.7e-12 Score=140.17 Aligned_cols=166 Identities=17% Similarity=0.276 Sum_probs=111.1
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCC-c---eE--------Eeccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE-S---II--------RIDMS 455 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~-~---~~--------~~~~~ 455 (899)
.+|+||+.+++.+.+++...+.. +.+||+||+|+||+++|.++|+.++.... . +. .-+|+
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~--------HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~ 90 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLH--------HAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHP 90 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCC--------ceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCCh
Confidence 57889999999999998865422 25999999999999999999999964321 0 00 00111
Q ss_pred ccc----cccchhhccCCC---C-----CcccccccchhhHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCce
Q psy2887 456 EFI----EKHSISRLIGAP---P-----GYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRL 519 (899)
Q Consensus 456 ~~~----~~~~~~~l~g~~---~-----~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~ 519 (899)
... ..+.-...+... . ..++.++.+.+...+.. ..+.|++|||+|.+++..+|.|++.+|+
T Consensus 91 ~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEe--- 167 (365)
T PRK07471 91 VARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEE--- 167 (365)
T ss_pred HHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhc---
Confidence 100 000000111100 0 11222222334333332 3467999999999999999999999998
Q ss_pred ecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHH
Q psy2887 520 TDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQ 597 (899)
Q Consensus 520 ~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~ 597 (899)
+..+++||++|+.... +.|.+.+|| ..+.|.|++.+++.+++...
T Consensus 168 --------pp~~~~~IL~t~~~~~------------------------llpti~SRc-~~i~l~~l~~~~i~~~L~~~ 212 (365)
T PRK07471 168 --------PPARSLFLLVSHAPAR------------------------LLPTIRSRC-RKLRLRPLAPEDVIDALAAA 212 (365)
T ss_pred --------CCCCeEEEEEECCchh------------------------chHHhhccc-eEEECCCCCHHHHHHHHHHh
Confidence 4467788888885433 345588999 89999999999998887553
No 275
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.37 E-value=3.8e-12 Score=150.14 Aligned_cols=160 Identities=23% Similarity=0.376 Sum_probs=114.1
Q ss_pred cCCChHHHHHHHHHHHHHhh-------cCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccccccc
Q psy2887 389 RVVGQDEAISAVSNAIRRSR-------SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKH 461 (899)
Q Consensus 389 ~v~gq~~~~~~l~~~i~~~~-------~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~ 461 (899)
++.|.+.+++.+...+.... .+.. .|. +++|+||||||||++|++++..+ +.+|+.++++++...
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~---~~~-gill~G~~G~GKt~~~~~~a~~~---~~~f~~is~~~~~~~- 224 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGK---IPK-GVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVEM- 224 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCC---CCC-cEEEECCCCCCHHHHHHHHHHHc---CCCEEEEehHHhHHh-
Confidence 44566666666655553321 1111 122 59999999999999999999999 889999998877542
Q ss_pred chhhccCCCCCcccccc--cchhhHHHHhCCCEEEEEccccccCH--------------HHHHHHHHhhcCCceecCCCc
Q psy2887 462 SISRLIGAPPGYIGYEE--GGYLTEIVRRKPYSLILLDEIEKANS--------------DVFNILLQILDDGRLTDNRGR 525 (899)
Q Consensus 462 ~~~~l~g~~~~~~g~~~--~~~l~~~~~~~~~~vl~lDEid~~~~--------------~~~~~Ll~~le~g~~~~~~g~ 525 (899)
++|... .+.++..++...++||||||+|.+.. .+++.||..|+.- .
T Consensus 225 -----------~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~--~----- 286 (644)
T PRK10733 225 -----------FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF--E----- 286 (644)
T ss_pred -----------hhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcc--c-----
Confidence 222222 24566667777889999999998742 3567777777741 1
Q ss_pred eEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHh--hccCeEEEecCCCHHHHHHHHHHHHHH
Q psy2887 526 TINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQLNI 600 (899)
Q Consensus 526 ~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~~~~~~i~~~~l~~ 600 (899)
....+++|+|||.+.. ++|.++ +|||..|.|+.|+.+++.+|+..++.+
T Consensus 287 --~~~~vivIaaTN~p~~------------------------lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 287 --GNEGIIVIAATNRPDV------------------------LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred --CCCCeeEEEecCChhh------------------------cCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 1346788999996432 566676 599999999999999999998887754
No 276
>PRK06620 hypothetical protein; Validated
Probab=99.37 E-value=4.6e-12 Score=128.43 Aligned_cols=137 Identities=15% Similarity=0.110 Sum_probs=100.4
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEEcc
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDE 93 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDE 93 (899)
+.++|+||||||||+|++++++.. +..+ +. ... . ....+ . ...+|+|||
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~----------~~~~--~~--~~~----~-------~~~~~---~---~~d~lliDd 93 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS----------NAYI--IK--DIF----F-------NEEIL---E---KYNAFIIED 93 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc----------CCEE--cc--hhh----h-------chhHH---h---cCCEEEEec
Confidence 569999999999999999988755 2211 11 000 0 01111 1 124899999
Q ss_pred ccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhccc---cccccCCCHHHHHHHHHhhhhh
Q psy2887 94 LHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQ---KILVEEPDIEETISILRGLQKK 170 (899)
Q Consensus 94 i~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~---~i~l~~p~~~e~~~il~~~~~~ 170 (899)
+|.+. .......+....+.+..++|++++++. .+.+ |+|++|+. .+.+.+|+.+++..++++....
T Consensus 94 i~~~~-------~~~lf~l~N~~~e~g~~ilits~~~p~---~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 94 IENWQ-------EPALLHIFNIINEKQKYLLLTSSDKSR---NFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred cccch-------HHHHHHHHHHHHhcCCEEEEEcCCCcc---ccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 99551 124555566666888888888888877 3456 89999998 5899999999999999887765
Q ss_pred hhcccCCCCCHHHHHHHHhhhhhhcc
Q psy2887 171 YEVHHGVEITDPAIVAASELSYRYIS 196 (899)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (899)
.++.+++++++++++.+.+.+.
T Consensus 163 ----~~l~l~~ev~~~L~~~~~~d~r 184 (214)
T PRK06620 163 ----SSVTISRQIIDFLLVNLPREYS 184 (214)
T ss_pred ----cCCCCCHHHHHHHHHHccCCHH
Confidence 5788999999999999887655
No 277
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.37 E-value=6.3e-12 Score=135.23 Aligned_cols=108 Identities=24% Similarity=0.354 Sum_probs=79.6
Q ss_pred CCEEEEEccccccccCCCC----CchhhHHHhhhhhhcC------------CceEEEEecChhHHHHhhhcCHHHHhccc
Q psy2887 85 KDIIIFIDELHTMIGTGKV----EGSIDAGNMLKPELSR------------GELHCIGATTLNEYRQYIEKDAAFERRFQ 148 (899)
Q Consensus 85 ~~~iL~iDEi~~l~~~~~~----~~~~~~~~~l~~~l~~------------~~v~vI~at~~~~~~~~~~ld~al~~Rf~ 148 (899)
..+|+||||+|.++.+..+ ..+..+++.|++++|. .++.||+++-....+ --++-|.|..||+
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~k-p~DlIPEl~GR~P 325 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAK-PSDLIPELQGRFP 325 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCC-hhhccHHHhCccc
Confidence 3569999999999976432 1223477789999874 467888887643211 1256799999999
Q ss_pred c-ccccCCCHHHHHHHH----Hhhhhhhhc---ccC--CCCCHHHHHHHHhhhhh
Q psy2887 149 K-ILVEEPDIEETISIL----RGLQKKYEV---HHG--VEITDPAIVAASELSYR 193 (899)
Q Consensus 149 ~-i~l~~p~~~e~~~il----~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~ 193 (899)
+ +.+.+++.++...|| ..++++|.. ..+ +.|+++++..+++.+..
T Consensus 326 i~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~ 380 (441)
T TIGR00390 326 IRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYN 380 (441)
T ss_pred eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHH
Confidence 6 889999999999999 356666652 333 47899999999988754
No 278
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.37 E-value=3.7e-12 Score=152.06 Aligned_cols=163 Identities=19% Similarity=0.289 Sum_probs=113.7
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhc-----C--cccCchHHHHHHHHHHHHHhcC
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA-----G--TKYRGEFEDRLKKILKEISNNQ 84 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~-----~--~~~~g~~~~~l~~~~~~~~~~~ 84 (899)
....++|+||||+|||++++.+|+.+ +.+++.++++.... | ..+.|.....+.+.+..+.. .
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l----------~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~-~ 416 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKAT----------GRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGV-K 416 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCC-C
Confidence 44578999999999999999999988 66777776554321 1 12344443344444444431 2
Q ss_pred CCEEEEEccccccccCCCCCchhhHHHhhhhhhcC-----------------CceEEEEecChhHHHHhhhcCHHHHhcc
Q psy2887 85 KDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-----------------GELHCIGATTLNEYRQYIEKDAAFERRF 147 (899)
Q Consensus 85 ~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~-----------------~~v~vI~at~~~~~~~~~~ld~al~~Rf 147 (899)
..|++|||+|.+.++..+ +..++|++.++. +++.+|+|+|.. .++++|++||
T Consensus 417 -~~villDEidk~~~~~~g----~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~------~i~~aLl~R~ 485 (784)
T PRK10787 417 -NPLFLLDEIDKMSSDMRG----DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM------NIPAPLLDRM 485 (784)
T ss_pred -CCEEEEEChhhcccccCC----CHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC------CCCHHHhcce
Confidence 338999999999764321 234566666643 578899988753 5899999999
Q ss_pred ccccccCCCHHHHHHHHHhhhh-h-hhc----ccCCCCCHHHHHHHHhhhhhhcc
Q psy2887 148 QKILVEEPDIEETISILRGLQK-K-YEV----HHGVEITDPAIVAASELSYRYIS 196 (899)
Q Consensus 148 ~~i~l~~p~~~e~~~il~~~~~-~-~~~----~~~~~~~~~~~~~~~~~~~~~~~ 196 (899)
..|.+..++.++..+|.+.++. + ... ...+.++++++..+++.+.+..+
T Consensus 486 ~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~G 540 (784)
T PRK10787 486 EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAG 540 (784)
T ss_pred eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccC
Confidence 9999999999999999987663 2 111 12467999999999874444333
No 279
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.36 E-value=1.9e-11 Score=137.84 Aligned_cols=165 Identities=14% Similarity=0.303 Sum_probs=109.8
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHH-HHHHHHHHHHHhcCCCEEEEE
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFE-DRLKKILKEISNNQKDIIIFI 91 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~-~~l~~~~~~~~~~~~~~iL~i 91 (899)
.++++|+||||+|||+|++++++++.... | +..++.+++..+.. ....... ..+..+.+... ...+|+|
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~-~----~~~v~yi~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~dlLii 205 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENN-P----NAKVVYVSSEKFTN--DFVNALRNNKMEEFKEKYR---SVDLLLI 205 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhC-C----CCcEEEEEHHHHHH--HHHHHHHcCCHHHHHHHHH---hCCEEEE
Confidence 45689999999999999999999886431 1 46677777655431 1111100 01122222232 2349999
Q ss_pred ccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhccc---cccccCCCHHHHHHHHHhhh
Q psy2887 92 DELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQ---KILVEEPDIEETISILRGLQ 168 (899)
Q Consensus 92 DEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~---~i~l~~p~~~e~~~il~~~~ 168 (899)
||++.+.... .........+....+.+..++|+++..+.. .-.+++.+.+||. .+.|++|+.++|..|++..+
T Consensus 206 DDi~~l~~~~--~~~~~l~~~~n~~~~~~~~iiits~~~p~~--l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~ 281 (405)
T TIGR00362 206 DDIQFLAGKE--RTQEEFFHTFNALHENGKQIVLTSDRPPKE--LPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKA 281 (405)
T ss_pred ehhhhhcCCH--HHHHHHHHHHHHHHHCCCCEEEecCCCHHH--HhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 9999986532 111234445555556666666655554441 2236889999996 38999999999999999888
Q ss_pred hhhhcccCCCCCHHHHHHHHhhhhhhc
Q psy2887 169 KKYEVHHGVEITDPAIVAASELSYRYI 195 (899)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (899)
+. .++.++++++.++++...+.+
T Consensus 282 ~~----~~~~l~~e~l~~ia~~~~~~~ 304 (405)
T TIGR00362 282 EE----EGLELPDEVLEFIAKNIRSNV 304 (405)
T ss_pred HH----cCCCCCHHHHHHHHHhcCCCH
Confidence 76 578899999999988876643
No 280
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.36 E-value=2.9e-12 Score=124.17 Aligned_cols=151 Identities=25% Similarity=0.364 Sum_probs=94.7
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCce-EEecccccc----cccchhhc
Q psy2887 392 GQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI-IRIDMSEFI----EKHSISRL 466 (899)
Q Consensus 392 gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~-~~~~~~~~~----~~~~~~~l 466 (899)
||+.+++.|...+...+.. ..+||+||+|+||+++|+++|+.++.....- ....|.... ..+.....
T Consensus 1 gq~~~~~~L~~~~~~~~l~--------ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~ 72 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLP--------HALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFII 72 (162)
T ss_dssp S-HHHHHHHHHHHHCTC----------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEE
T ss_pred CcHHHHHHHHHHHHcCCcc--------eeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEE
Confidence 8999999999998865422 2589999999999999999999996644221 111111111 00111111
Q ss_pred cCCCCC--cccccccchhhHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCC
Q psy2887 467 IGAPPG--YIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNL 540 (899)
Q Consensus 467 ~g~~~~--~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~ 540 (899)
+..... .++.+..+.+...+.. +++.|++|||+|++....+|+||+.||+ +..+++||++|+.
T Consensus 73 ~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEe-----------pp~~~~fiL~t~~ 141 (162)
T PF13177_consen 73 IKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEE-----------PPENTYFILITNN 141 (162)
T ss_dssp EETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHS-----------TTTTEEEEEEES-
T ss_pred EecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcC-----------CCCCEEEEEEECC
Confidence 211111 2233333334433332 3467999999999999999999999998 5689999999985
Q ss_pred ChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCC
Q psy2887 541 GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLN 586 (899)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~ 586 (899)
... +.|.++||+ ..+.|.|++
T Consensus 142 ~~~------------------------il~TI~SRc-~~i~~~~ls 162 (162)
T PF13177_consen 142 PSK------------------------ILPTIRSRC-QVIRFRPLS 162 (162)
T ss_dssp GGG------------------------S-HHHHTTS-EEEEE----
T ss_pred hHH------------------------ChHHHHhhc-eEEecCCCC
Confidence 443 566799999 999999875
No 281
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.36 E-value=2.2e-11 Score=137.24 Aligned_cols=167 Identities=17% Similarity=0.260 Sum_probs=109.7
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchH-HHHHHHHHHHHHhcCCCEEEEE
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEF-EDRLKKILKEISNNQKDIIIFI 91 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~-~~~l~~~~~~~~~~~~~~iL~i 91 (899)
.++++|+||||+|||+|++++|+.+.... | +..++.++...+... ..... ...+........ ..+.+|+|
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~-~----~~~v~yi~~~~f~~~--~~~~~~~~~~~~f~~~~~--~~~dvLlI 200 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNE-P----DLRVMYITSEKFLND--LVDSMKEGKLNEFREKYR--KKVDVLLI 200 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhC-C----CCeEEEEEHHHHHHH--HHHHHhcccHHHHHHHHH--hcCCEEEE
Confidence 45799999999999999999999875432 2 456777776554311 10000 001122222221 13559999
Q ss_pred ccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhccc---cccccCCCHHHHHHHHHhhh
Q psy2887 92 DELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQ---KILVEEPDIEETISILRGLQ 168 (899)
Q Consensus 92 DEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~---~i~l~~p~~~e~~~il~~~~ 168 (899)
||++.+.... ....+....+....+.+..++|++...+.. .-.+.+.+.+||. .+.+++|+.+.|.+|++..+
T Consensus 201 DDi~~l~~~~--~~q~elf~~~n~l~~~~k~iIitsd~~p~~--l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~ 276 (440)
T PRK14088 201 DDVQFLIGKT--GVQTELFHTFNELHDSGKQIVICSDREPQK--LSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKML 276 (440)
T ss_pred echhhhcCcH--HHHHHHHHHHHHHHHcCCeEEEECCCCHHH--HHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHH
Confidence 9999986532 111234445555556666555555444432 2245789999997 48899999999999999887
Q ss_pred hhhhcccCCCCCHHHHHHHHhhhhhhcc
Q psy2887 169 KKYEVHHGVEITDPAIVAASELSYRYIS 196 (899)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (899)
+. .++.++++++.++++...+.++
T Consensus 277 ~~----~~~~l~~ev~~~Ia~~~~~~~R 300 (440)
T PRK14088 277 EI----EHGELPEEVLNFVAENVDDNLR 300 (440)
T ss_pred Hh----cCCCCCHHHHHHHHhccccCHH
Confidence 65 5788999999999988766443
No 282
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=8.6e-12 Score=144.05 Aligned_cols=173 Identities=23% Similarity=0.280 Sum_probs=128.4
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCC-C---Ccc---------------CCCeEEEEehhhhhcCcccCchHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEV-P---NSL---------------LSKKILLLDIALLLAGTKYRGEFED 71 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~-p---~~l---------------~~~~~~~~~~~~l~~~~~~~g~~~~ 71 (899)
+....+||+||+|+||||+|+++|+.+..... . +.+ ....+++++.. +..| ..
T Consensus 44 ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~------s~~g--vd 115 (598)
T PRK09111 44 RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAA------SHTG--VD 115 (598)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEeccc------ccCC--HH
Confidence 44556999999999999999999999853210 0 000 01123333322 1112 23
Q ss_pred HHHHHHHHHHh---cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhc
Q psy2887 72 RLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERR 146 (899)
Q Consensus 72 ~l~~~~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~R 146 (899)
.++++++.+.. .....|+||||+|.|.. ...|.|+..|+. ..+++|++|+..+ .+.+.+++|
T Consensus 116 ~IReIie~~~~~P~~a~~KVvIIDEad~Ls~--------~a~naLLKtLEePp~~~~fIl~tte~~-----kll~tI~SR 182 (598)
T PRK09111 116 DIREIIESVRYRPVSARYKVYIIDEVHMLST--------AAFNALLKTLEEPPPHVKFIFATTEIR-----KVPVTVLSR 182 (598)
T ss_pred HHHHHHHHHHhchhcCCcEEEEEEChHhCCH--------HHHHHHHHHHHhCCCCeEEEEEeCChh-----hhhHHHHhh
Confidence 57777776642 23456999999999953 567889999986 5688888888776 577889999
Q ss_pred cccccccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 147 FQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 147 f~~i~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
|..+.|..|+.++...+++..+++ .++.++++++..+++.+.+.+. ++..+++.++..
T Consensus 183 cq~~~f~~l~~~el~~~L~~i~~k----egi~i~~eAl~lIa~~a~Gdlr------~al~~Ldkli~~ 240 (598)
T PRK09111 183 CQRFDLRRIEADVLAAHLSRIAAK----EGVEVEDEALALIARAAEGSVR------DGLSLLDQAIAH 240 (598)
T ss_pred eeEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHH------HHHHHHHHHHhh
Confidence 999999999999999999988875 6788999999999999988665 888888887654
No 283
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.36 E-value=1.5e-12 Score=123.08 Aligned_cols=137 Identities=20% Similarity=0.323 Sum_probs=101.2
Q ss_pred CChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCC
Q psy2887 391 VGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAP 470 (899)
Q Consensus 391 ~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 470 (899)
+|.+.+++.+...+...... ..+++++|++||||+++|++|+........+|+.++|....
T Consensus 1 vG~S~~~~~l~~~l~~~a~~-------~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~------------ 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKS-------SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP------------ 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCS-------SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC------------
T ss_pred CCCCHHHHHHHHHHHHHhCC-------CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc------------
Confidence 47888889998888876522 22699999999999999999999886666677777776542
Q ss_pred CCcccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhc
Q psy2887 471 PGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEK 550 (899)
Q Consensus 471 ~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~ 550 (899)
.+.+....+++|||+|+|.+++..|..|+..|+... ..++.+|++|..+...+.+
T Consensus 62 ------------~~~l~~a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~----------~~~~RlI~ss~~~l~~l~~--- 116 (138)
T PF14532_consen 62 ------------AELLEQAKGGTLYLKNIDRLSPEAQRRLLDLLKRQE----------RSNVRLIASSSQDLEELVE--- 116 (138)
T ss_dssp ------------HHHHHHCTTSEEEEECGCCS-HHHHHHHHHHHHHCT----------TTTSEEEEEECC-CCCHHH---
T ss_pred ------------HHHHHHcCCCEEEECChHHCCHHHHHHHHHHHHhcC----------CCCeEEEEEeCCCHHHHhh---
Confidence 233444577899999999999999999999998621 3577899999988775544
Q ss_pred CcHHHHHHHHHHHHhhcCChhHhhccCe-EEEecCC
Q psy2887 551 GDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYL 585 (899)
Q Consensus 551 ~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l 585 (899)
.+.|.++|+.||+. .|.++|+
T Consensus 117 --------------~~~~~~~L~~~l~~~~i~lPpL 138 (138)
T PF14532_consen 117 --------------EGRFSPDLYYRLSQLEIHLPPL 138 (138)
T ss_dssp --------------HSTHHHHHHHHCSTCEEEE---
T ss_pred --------------ccchhHHHHHHhCCCEEeCCCC
Confidence 46788999999974 7777764
No 284
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.36 E-value=5.8e-12 Score=128.43 Aligned_cols=168 Identities=14% Similarity=0.278 Sum_probs=110.6
Q ss_pred eEEEEecCCCChHHHHHHHHHHHhcc--CCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEE
Q psy2887 419 GSFMFLGPTGVGKTELCKTLSACIFN--NEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILL 496 (899)
Q Consensus 419 ~~ill~GppGtGKT~lA~~la~~l~~--~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~l 496 (899)
.+++++||+|+|||+|.+++++.+.. .+..++++++.++....... + .......+...++ ...+|+|
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~-~--------~~~~~~~~~~~~~--~~DlL~i 103 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADA-L--------RDGEIEEFKDRLR--SADLLII 103 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHH-H--------HTTSHHHHHHHHC--TSSEEEE
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHH-H--------Hcccchhhhhhhh--cCCEEEE
Confidence 36899999999999999999998743 46788888888776542111 0 0011112333344 3459999
Q ss_pred ccccccCHH--HHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhh
Q psy2887 497 DEIEKANSD--VFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN 574 (899)
Q Consensus 497 DEid~~~~~--~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 574 (899)
|+++.+... .+..|+.+++.- ...+..+|+|++..+..+. .+.|+|.+
T Consensus 104 DDi~~l~~~~~~q~~lf~l~n~~----------~~~~k~li~ts~~~P~~l~--------------------~~~~~L~S 153 (219)
T PF00308_consen 104 DDIQFLAGKQRTQEELFHLFNRL----------IESGKQLILTSDRPPSELS--------------------GLLPDLRS 153 (219)
T ss_dssp ETGGGGTTHHHHHHHHHHHHHHH----------HHTTSEEEEEESS-TTTTT--------------------TS-HHHHH
T ss_pred ecchhhcCchHHHHHHHHHHHHH----------HhhCCeEEEEeCCCCcccc--------------------ccChhhhh
Confidence 999998754 588888888752 1245578899988776443 37888999
Q ss_pred ccC--eEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCccccccccccc
Q psy2887 575 RID--DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGC 639 (899)
Q Consensus 575 R~~--~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~ 639 (899)
||. .++.+.+|+.++..+|++.... .++ +.++++++++|++..- ..++.|.+.
T Consensus 154 Rl~~Gl~~~l~~pd~~~r~~il~~~a~-------~~~--~~l~~~v~~~l~~~~~---~~~r~L~~~ 208 (219)
T PF00308_consen 154 RLSWGLVVELQPPDDEDRRRILQKKAK-------ERG--IELPEEVIEYLARRFR---RDVRELEGA 208 (219)
T ss_dssp HHHCSEEEEE----HHHHHHHHHHHHH-------HTT----S-HHHHHHHHHHTT---SSHHHHHHH
T ss_pred hHhhcchhhcCCCCHHHHHHHHHHHHH-------HhC--CCCcHHHHHHHHHhhc---CCHHHHHHH
Confidence 995 4999999999999999887763 345 6799999999998321 234555554
No 285
>PRK08727 hypothetical protein; Validated
Probab=99.35 E-value=1.8e-11 Score=126.43 Aligned_cols=164 Identities=16% Similarity=0.206 Sum_probs=109.5
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEEcc
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDE 93 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDE 93 (899)
+.++|+||+|||||+|+++++..+... +..+..+....+. ..+...++...+ ..+|+|||
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~-------~~~~~y~~~~~~~----------~~~~~~~~~l~~---~dlLiIDD 101 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQA-------GRSSAYLPLQAAA----------GRLRDALEALEG---RSLVALDG 101 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-------CCcEEEEeHHHhh----------hhHHHHHHHHhc---CCEEEEeC
Confidence 459999999999999999999987543 4455555543322 234455555542 34999999
Q ss_pred ccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhccc---cccccCCCHHHHHHHHHhhhhh
Q psy2887 94 LHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQ---KILVEEPDIEETISILRGLQKK 170 (899)
Q Consensus 94 i~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~---~i~l~~p~~~e~~~il~~~~~~ 170 (899)
++.+..... ......+.+....+++ ..+|.+++... ...-.+++.|.+||. .+.|++|+.+++.++++.....
T Consensus 102 i~~l~~~~~--~~~~lf~l~n~~~~~~-~~vI~ts~~~p-~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~ 177 (233)
T PRK08727 102 LESIAGQRE--DEVALFDFHNRARAAG-ITLLYTARQMP-DGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQR 177 (233)
T ss_pred cccccCChH--HHHHHHHHHHHHHHcC-CeEEEECCCCh-hhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHH
Confidence 998865331 1122333333333343 44555555332 123346899999974 4899999999999999986665
Q ss_pred hhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHH
Q psy2887 171 YEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEA 211 (899)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a 211 (899)
.++.++++++.++++.+.|... .+..+++..
T Consensus 178 ----~~l~l~~e~~~~La~~~~rd~r------~~l~~L~~l 208 (233)
T PRK08727 178 ----RGLALDEAAIDWLLTHGERELA------GLVALLDRL 208 (233)
T ss_pred ----cCCCCCHHHHHHHHHhCCCCHH------HHHHHHHHH
Confidence 4789999999999999887655 555555543
No 286
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.35 E-value=9.4e-12 Score=137.64 Aligned_cols=170 Identities=26% Similarity=0.323 Sum_probs=114.8
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchH-HHHHHHHHHHHH---hcCCC
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEF-EDRLKKILKEIS---NNQKD 86 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~-~~~l~~~~~~~~---~~~~~ 86 (899)
..++|+||+||||||||++|+++|+.+ +.+++.++++.+.. ..|+|.. +..+..++..+. ....+
T Consensus 106 ~~~~~iLl~Gp~GtGKT~lAr~lA~~l----------~~pf~~id~~~l~~-~gyvG~d~e~~l~~l~~~~~~~~~~a~~ 174 (412)
T PRK05342 106 LQKSNILLIGPTGSGKTLLAQTLARIL----------DVPFAIADATTLTE-AGYVGEDVENILLKLLQAADYDVEKAQR 174 (412)
T ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHh----------CCCceecchhhccc-CCcccchHHHHHHHHHHhccccHHHcCC
Confidence 356899999999999999999999988 78888888876542 3467763 333444443221 12347
Q ss_pred EEEEEccccccccCCCC------CchhhHHHhhhhhhcCC---------------ceEEEEecCh--------h------
Q psy2887 87 IIIFIDELHTMIGTGKV------EGSIDAGNMLKPELSRG---------------ELHCIGATTL--------N------ 131 (899)
Q Consensus 87 ~iL~iDEi~~l~~~~~~------~~~~~~~~~l~~~l~~~---------------~v~vI~at~~--------~------ 131 (899)
+||||||+|.+...... .++..+++.|+..|+.. ..++|.|+|. .
T Consensus 175 gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~ 254 (412)
T PRK05342 175 GIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKII 254 (412)
T ss_pred cEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHH
Confidence 89999999999875321 12234677888888521 1233444433 0
Q ss_pred -------------------------HHH--------HhhhcCHHHHhcccc-ccccCCCHHHHHHHHH----hhhhhhhc
Q psy2887 132 -------------------------EYR--------QYIEKDAAFERRFQK-ILVEEPDIEETISILR----GLQKKYEV 173 (899)
Q Consensus 132 -------------------------~~~--------~~~~ld~al~~Rf~~-i~l~~p~~~e~~~il~----~~~~~~~~ 173 (899)
... ..+-+.|.|..|++. +.|.+++.++..+|+. .+++++..
T Consensus 255 ~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~ 334 (412)
T PRK05342 255 KQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQK 334 (412)
T ss_pred HHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 000 011247899999986 8899999999999996 45554431
Q ss_pred ---c--cCCCCCHHHHHHHHhhh
Q psy2887 174 ---H--HGVEITDPAIVAASELS 191 (899)
Q Consensus 174 ---~--~~~~~~~~~~~~~~~~~ 191 (899)
. -.+.++++++.++++.+
T Consensus 335 ~l~~~~i~L~~t~~al~~Ia~~~ 357 (412)
T PRK05342 335 LFEMDGVELEFTDEALEAIAKKA 357 (412)
T ss_pred HHHhCCcEEEECHHHHHHHHHhC
Confidence 2 33579999999999874
No 287
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.35 E-value=8.2e-12 Score=150.96 Aligned_cols=181 Identities=17% Similarity=0.262 Sum_probs=121.7
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccC-------CCceEEecccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN-------EESIIRIDMSEFIEK 460 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~-------~~~~~~~~~~~~~~~ 460 (899)
..++|+++.++.+...+.+.. ..+++|+||||||||++|+.+|+.+... +..++.++++.+...
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~---------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag 257 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR---------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAG 257 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC---------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcc
Confidence 578999999888887775432 2368999999999999999999988322 233555555443211
Q ss_pred cchhhccCCCCCccccccc--chhhHHHHh-CCCEEEEEccccccCH--------HHHHHHHHhhcCCceecCCCceEec
Q psy2887 461 HSISRLIGAPPGYIGYEEG--GYLTEIVRR-KPYSLILLDEIEKANS--------DVFNILLQILDDGRLTDNRGRTINF 529 (899)
Q Consensus 461 ~~~~~l~g~~~~~~g~~~~--~~l~~~~~~-~~~~vl~lDEid~~~~--------~~~~~Ll~~le~g~~~~~~g~~~~~ 529 (899)
..|.|.-+. +.+...+.. ..+.|||||||+.+.. ++.|.|+..++.|.
T Consensus 258 ----------~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~----------- 316 (852)
T TIGR03345 258 ----------ASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGE----------- 316 (852)
T ss_pred ----------cccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCC-----------
Confidence 124444333 334444433 3467999999998753 34567888888753
Q ss_pred CCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy2887 530 RNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMN 609 (899)
Q Consensus 530 ~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~ 609 (899)
..+|.+|+... +.. .-..+|.|.+|| .+|.+.+|+.++..+|++.....+...
T Consensus 317 --l~~IgaTT~~e--~~~-----------------~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~~----- 369 (852)
T TIGR03345 317 --LRTIAATTWAE--YKK-----------------YFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEKH----- 369 (852)
T ss_pred --eEEEEecCHHH--Hhh-----------------hhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhhc-----
Confidence 45888888421 000 011478899999 799999999999999985444333221
Q ss_pred cceeecHHHHHHHHhc
Q psy2887 610 MDLKISKAALKKISNI 625 (899)
Q Consensus 610 ~~~~~~~~~~~~L~~~ 625 (899)
..+.++++++..++..
T Consensus 370 ~~v~i~d~al~~~~~l 385 (852)
T TIGR03345 370 HGVLILDEAVVAAVEL 385 (852)
T ss_pred CCCeeCHHHHHHHHHH
Confidence 2377888888888764
No 288
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.35 E-value=1.7e-12 Score=115.87 Aligned_cols=108 Identities=30% Similarity=0.490 Sum_probs=64.1
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccc-cccccchhhccCCCCCcccccccchhhHHHHhCC--CEEEEE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE-FIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKP--YSLILL 496 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~-~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~--~~vl~l 496 (899)
|+||.|+||+|||++|+++|+.+ +..|.++.+.. +. .+.++|.+. |.... + .+ . ....+ ..|+++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~---~~~f~RIq~tpdll----PsDi~G~~v-~~~~~-~-~f-~-~~~GPif~~ill~ 68 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL---GLSFKRIQFTPDLL----PSDILGFPV-YDQET-G-EF-E-FRPGPIFTNILLA 68 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT---T--EEEEE--TT------HHHHHEEEE-EETTT-T-EE-E-EEE-TT-SSEEEE
T ss_pred CEeeECCCccHHHHHHHHHHHHc---CCceeEEEecCCCC----cccceeeee-eccCC-C-ee-E-eecChhhhceeee
Confidence 58999999999999999999999 88999998753 32 234444321 11000 0 00 0 00111 259999
Q ss_pred ccccccCHHHHHHHHHhhcCCceecCCCceEecCC-eEEEEecCC
Q psy2887 497 DEIEKANSDVFNILLQILDDGRLTDNRGRTINFRN-TIIVMTSNL 540 (899)
Q Consensus 497 DEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~-~~iI~tsn~ 540 (899)
|||.+++|.+|++||++|++++++.. |.+..+.+ ..||+|-|.
T Consensus 69 DEiNrappktQsAlLeam~Er~Vt~~-g~~~~lp~pf~ViATqNp 112 (131)
T PF07726_consen 69 DEINRAPPKTQSALLEAMEERQVTID-GQTYPLPDPFFVIATQNP 112 (131)
T ss_dssp ETGGGS-HHHHHHHHHHHHHSEEEET-TEEEE--SS-EEEEEE-T
T ss_pred cccccCCHHHHHHHHHHHHcCeEEeC-CEEEECCCcEEEEEecCc
Confidence 99999999999999999999988743 45555555 556666664
No 289
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.35 E-value=1.9e-11 Score=122.59 Aligned_cols=155 Identities=21% Similarity=0.290 Sum_probs=100.2
Q ss_pred eEEEEecCCCChHHHHHHHHHHHhccCC----Cce-EEecccccccc-cchhhccCCCCCcccccccchhhHHHHh----
Q psy2887 419 GSFMFLGPTGVGKTELCKTLSACIFNNE----ESI-IRIDMSEFIEK-HSISRLIGAPPGYIGYEEGGYLTEIVRR---- 488 (899)
Q Consensus 419 ~~ill~GppGtGKT~lA~~la~~l~~~~----~~~-~~~~~~~~~~~-~~~~~l~g~~~~~~g~~~~~~l~~~~~~---- 488 (899)
+.+||+||+|+|||++|+.+++.+.... .++ ...+|..+... +....++....+..+.+..+.+.+.+..
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 94 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQE 94 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCccc
Confidence 3699999999999999999999995431 111 00011111000 0000011111111222222333444433
Q ss_pred CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcC
Q psy2887 489 KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYF 568 (899)
Q Consensus 489 ~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 568 (899)
+...|+||||+|++.+..++.|+..||+ +..++++|++++.. ..+
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~-----------~~~~~~~il~~~~~------------------------~~l 139 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEE-----------PPPNTLFILITPSP------------------------EKL 139 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcC-----------CCCCeEEEEEECCh------------------------HhC
Confidence 3457999999999999999999999987 34677888888732 135
Q ss_pred ChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHh
Q psy2887 569 RPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISN 624 (899)
Q Consensus 569 ~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 624 (899)
.+.+.+|+ .++.|.|++.+++.+++... + ++++++..++.
T Consensus 140 ~~~i~sr~-~~~~~~~~~~~~~~~~l~~~-----------g----i~~~~~~~i~~ 179 (188)
T TIGR00678 140 LPTIRSRC-QVLPFPPLSEEALLQWLIRQ-----------G----ISEEAAELLLA 179 (188)
T ss_pred hHHHHhhc-EEeeCCCCCHHHHHHHHHHc-----------C----CCHHHHHHHHH
Confidence 66789999 79999999999998886543 2 56888888876
No 290
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.35 E-value=5.7e-11 Score=136.75 Aligned_cols=173 Identities=20% Similarity=0.191 Sum_probs=125.4
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCc--------------cCCCeEEEEehhhhhcCcccCchHHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNS--------------LLSKKILLLDIALLLAGTKYRGEFEDRLKKI 76 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~--------------l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~ 76 (899)
+-+..+||+||||+|||++|+++|+.+.....+.. .....++.++. .... ....++++
T Consensus 36 ~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idg------as~~--~vddIr~l 107 (563)
T PRK06647 36 KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDG------ASNT--SVQDVRQI 107 (563)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecC------cccC--CHHHHHHH
Confidence 34445899999999999999999999854321110 00112333321 1111 12345555
Q ss_pred HHHHHh---cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhcccccc
Q psy2887 77 LKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKIL 151 (899)
Q Consensus 77 ~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~ 151 (899)
.+.+.. .+...|++|||+|.|.. .+.+.|+..++. ..+++|++|+... .+.+++++||..+.
T Consensus 108 ~e~~~~~p~~~~~KVvIIDEa~~Ls~--------~a~naLLK~LEepp~~~vfI~~tte~~-----kL~~tI~SRc~~~~ 174 (563)
T PRK06647 108 KEEIMFPPASSRYRVYIIDEVHMLSN--------SAFNALLKTIEEPPPYIVFIFATTEVH-----KLPATIKSRCQHFN 174 (563)
T ss_pred HHHHHhchhcCCCEEEEEEChhhcCH--------HHHHHHHHhhccCCCCEEEEEecCChH-----HhHHHHHHhceEEE
Confidence 554431 23456999999999953 567889999986 5788888887765 67899999999999
Q ss_pred ccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 152 VEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 152 l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
|..++.++..++++..+.. .++.++++++..++..+.+.+. .+..+++.++..
T Consensus 175 f~~l~~~el~~~L~~i~~~----egi~id~eAl~lLa~~s~GdlR------~alslLdklis~ 227 (563)
T PRK06647 175 FRLLSLEKIYNMLKKVCLE----DQIKYEDEALKWIAYKSTGSVR------DAYTLFDQVVSF 227 (563)
T ss_pred ecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHH------HHHHHHHHHHhh
Confidence 9999999999999887765 5788999999999999887655 888888887654
No 291
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=3.9e-11 Score=136.04 Aligned_cols=169 Identities=22% Similarity=0.252 Sum_probs=120.6
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHcCCCCC----c----------cCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHH
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRIINGEVPN----S----------LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEI 80 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l~~~~~p~----~----------l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~ 80 (899)
.+||+||+|+||||+|+.+|+.+....... . -....++.++.+ ...| ...++.+.+.+
T Consensus 40 ayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaa------s~~g--vd~ir~I~~~~ 111 (486)
T PRK14953 40 AYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAA------SNRG--IDDIRALRDAV 111 (486)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCc------cCCC--HHHHHHHHHHH
Confidence 368899999999999999999885311100 0 001123333321 1122 12345555544
Q ss_pred Hh---cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC--ceEEEEecChhHHHHhhhcCHHHHhccccccccCC
Q psy2887 81 SN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG--ELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEP 155 (899)
Q Consensus 81 ~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~--~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p 155 (899)
.. .+...|++|||+|.|.. .+.+.|+..++.. .+++|.+|+... .+.+++.+|+..+.|.+|
T Consensus 112 ~~~P~~~~~KVvIIDEad~Lt~--------~a~naLLk~LEepp~~~v~Il~tt~~~-----kl~~tI~SRc~~i~f~~l 178 (486)
T PRK14953 112 SYTPIKGKYKVYIIDEAHMLTK--------EAFNALLKTLEEPPPRTIFILCTTEYD-----KIPPTILSRCQRFIFSKP 178 (486)
T ss_pred HhCcccCCeeEEEEEChhhcCH--------HHHHHHHHHHhcCCCCeEEEEEECCHH-----HHHHHHHHhceEEEcCCC
Confidence 32 23457999999998853 5667888888753 577777777665 677899999999999999
Q ss_pred CHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 156 DIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 156 ~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
+.++...+++.+++. .++.++++++..++..+.+.++ .+..+++.++..
T Consensus 179 s~~el~~~L~~i~k~----egi~id~~al~~La~~s~G~lr------~al~~Ldkl~~~ 227 (486)
T PRK14953 179 TKEQIKEYLKRICNE----EKIEYEEKALDLLAQASEGGMR------DAASLLDQASTY 227 (486)
T ss_pred CHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHH------HHHHHHHHHHHh
Confidence 999999999988876 5678999999999999887654 888888887644
No 292
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.34 E-value=1.5e-11 Score=133.50 Aligned_cols=157 Identities=17% Similarity=0.292 Sum_probs=108.4
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhcc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 467 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (899)
.+++||+.+++.+...+...+. .+.+||+||+|+|||++|+.+|+.++..... -+.+++. .+.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~--------~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~---~~h~D~~------~~~ 66 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRF--------SHAHIIVGEDGIGKSLLAKEIALKILGKSQQ---REYVDII------EFK 66 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCC--------CceEEeECCCCCCHHHHHHHHHHHHcCCCCC---CCCCCeE------Eec
Confidence 5688999999999999875432 1268999999999999999999998542210 0001110 000
Q ss_pred CCCCCcccccccchhhHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChh
Q psy2887 468 GAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSD 543 (899)
Q Consensus 468 g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~ 543 (899)
......++.++.+.+.+.+.. +...|++||++|+++...+|.|++.||+ +..+++||++|+...
T Consensus 67 ~~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEe-----------pp~~t~~il~~~~~~- 134 (313)
T PRK05564 67 PINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEE-----------PPKGVFIILLCENLE- 134 (313)
T ss_pred cccCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcC-----------CCCCeEEEEEeCChH-
Confidence 000011222222333333322 3457999999999999999999999998 567888888886432
Q ss_pred hhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHH
Q psy2887 544 KIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQ 597 (899)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~ 597 (899)
.+.|.+.+|| .++.|.+++.+++...+...
T Consensus 135 -----------------------~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~ 164 (313)
T PRK05564 135 -----------------------QILDTIKSRC-QIYKLNRLSKEEIEKFISYK 164 (313)
T ss_pred -----------------------hCcHHHHhhc-eeeeCCCcCHHHHHHHHHHH
Confidence 3556689999 89999999999987776543
No 293
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=5.5e-11 Score=132.97 Aligned_cols=174 Identities=20% Similarity=0.188 Sum_probs=122.7
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCC---c----c---------------CCCeEEEEehhhhhcCcccCch
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPN---S----L---------------LSKKILLLDIALLLAGTKYRGE 68 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~---~----l---------------~~~~~~~~~~~~l~~~~~~~g~ 68 (899)
+.+..+||+||||+||||+|+++|+.+....... . . ....++.++. ....
T Consensus 36 ~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~------~~~~-- 107 (397)
T PRK14955 36 RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDA------ASNN-- 107 (397)
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecc------cccC--
Confidence 3444599999999999999999999985421000 0 0 0111222221 1111
Q ss_pred HHHHHHHHHHHHHh---cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHH
Q psy2887 69 FEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAF 143 (899)
Q Consensus 69 ~~~~l~~~~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al 143 (899)
....++++.+.+.. .+...|+||||+|.+.. ...+.|+..+++ +..++|++|+... .+-+++
T Consensus 108 ~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~--------~~~~~LLk~LEep~~~t~~Il~t~~~~-----kl~~tl 174 (397)
T PRK14955 108 SVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI--------AAFNAFLKTLEEPPPHAIFIFATTELH-----KIPATI 174 (397)
T ss_pred CHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH--------HHHHHHHHHHhcCCCCeEEEEEeCChH-----HhHHHH
Confidence 12356666666631 23346999999999954 456778888876 3567777776654 677899
Q ss_pred HhccccccccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhh
Q psy2887 144 ERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 215 (899)
Q Consensus 144 ~~Rf~~i~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~ 215 (899)
.+|+..+.|.+++.++...+++..++. .++.++++++..++..+++.+. .+...++.+...+
T Consensus 175 ~sR~~~v~f~~l~~~ei~~~l~~~~~~----~g~~i~~~al~~l~~~s~g~lr------~a~~~L~kl~~~~ 236 (397)
T PRK14955 175 ASRCQRFNFKRIPLEEIQQQLQGICEA----EGISVDADALQLIGRKAQGSMR------DAQSILDQVIAFS 236 (397)
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHH------HHHHHHHHHHHhc
Confidence 999999999999999999999887765 5788999999999999988665 7888888766554
No 294
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.34 E-value=2.8e-11 Score=142.79 Aligned_cols=200 Identities=17% Similarity=0.261 Sum_probs=124.8
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhcc-----------------------
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFN----------------------- 444 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~----------------------- 444 (899)
..|+||+.++..+..+..... .+++||.||||||||++|++|++.+..
T Consensus 4 ~~ivGq~~~~~al~~~av~~~---------~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~ 74 (633)
T TIGR02442 4 TAIVGQEDLKLALLLNAVDPR---------IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEEC 74 (633)
T ss_pred chhcChHHHHHHHHHHhhCCC---------CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhh
Confidence 468899999988866655322 236999999999999999999999820
Q ss_pred ---------CCCceEEecccccccccchhhccCCCCCc----ccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHH
Q psy2887 445 ---------NEESIIRIDMSEFIEKHSISRLIGAPPGY----IGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILL 511 (899)
Q Consensus 445 ---------~~~~~~~~~~~~~~~~~~~~~l~g~~~~~----~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll 511 (899)
...+|+.+.++. ....++|...-. .|. ...-...+..+..+|||||||+.+++.+|+.|+
T Consensus 75 ~~~~~~~~~~~~pfv~~p~~~-----t~~~l~G~~d~~~~l~~g~--~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll 147 (633)
T TIGR02442 75 RRKYRPSEQRPVPFVNLPLGA-----TEDRVVGSLDIERALREGE--KAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLL 147 (633)
T ss_pred hhcccccccCCCCeeeCCCCC-----cHHHcCCcccHHHHhhcCC--eeecCcceeecCCCeEEeChhhhCCHHHHHHHH
Confidence 012333332221 112344431100 000 000123344556789999999999999999999
Q ss_pred HhhcCCceec-CCCc-eEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCC-HH
Q psy2887 512 QILDDGRLTD-NRGR-TINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLN-RK 588 (899)
Q Consensus 512 ~~le~g~~~~-~~g~-~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~-~~ 588 (899)
++|++|.+.. ..|. .....+.++|+|+|.. .+.|+++|++||+..|.+.++. .+
T Consensus 148 ~~le~g~~~v~r~g~~~~~~~~~~lIat~np~-----------------------eg~l~~~L~dR~~l~i~v~~~~~~~ 204 (633)
T TIGR02442 148 DAAAMGVNRVEREGLSVSHPARFVLIGTMNPE-----------------------EGDLRPQLLDRFGLCVDVAAPRDPE 204 (633)
T ss_pred HHHhcCCEEEEECCceeeecCCeEEEEecCCC-----------------------CCCCCHHHHhhcceEEEccCCCchH
Confidence 9999986432 2222 2233677888888842 1347889999999888877765 45
Q ss_pred HHHHHHHHHHHH-----------------HHHHH---HhcCcceeecHHHHHHHHhcc
Q psy2887 589 NILSIANIQLNI-----------------LKNKL---LKMNMDLKISKAALKKISNIG 626 (899)
Q Consensus 589 ~~~~i~~~~l~~-----------------~~~~~---~~~~~~~~~~~~~~~~L~~~~ 626 (899)
+..+++...+.. +...+ ...--.+.++++++++|....
T Consensus 205 ~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~ 262 (633)
T TIGR02442 205 ERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELC 262 (633)
T ss_pred HHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 666666543320 00110 111123678999999988743
No 295
>KOG0371|consensus
Probab=99.34 E-value=7.7e-13 Score=128.37 Aligned_cols=228 Identities=17% Similarity=0.274 Sum_probs=140.3
Q ss_pred cccccccccccHHHHHHHHHHhhccCCccceeeccccCCCCceEehhHHHHHhcC----CccEEEccCChHhHHhHhhhc
Q psy2887 629 LIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMR----NYAKIVLGNHEIHLLDVLINI 704 (899)
Q Consensus 629 ~~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~~~~l~~~~----~~~~~v~GNHe~~~l~~~~~~ 704 (899)
+.-.+||+||+++.|..+. +++-..+....+|.||++|||+.|.+++.++.+++ +++.+|+||||...+-...+.
T Consensus 61 pvtvcGDvHGqf~dl~ELf-kiGG~~pdtnylfmGDyvdrGy~SvetVS~lva~Kvry~~rvtilrGNHEsrqitqvygf 139 (319)
T KOG0371|consen 61 PVTVCGDVHGQFHDLIELF-KIGGLAPDTNYLFMGDYVDRGYYSVETVSLLVALKVRYPDRVTILRGNHESRQITQVYGF 139 (319)
T ss_pred ceEEecCcchhHHHHHHHH-HccCCCCCcceeeeeeecccccchHHHHHHHHHhhccccceeEEecCchHHHHHHHHHhh
Confidence 3355799999999988888 77777788999999999999999999999999987 789999999998876544332
Q ss_pred ccCchhchHHHhhCCcChHHHHHHHhcCCceEEe-CCEEEEecccccccchHHHHHHhHHHHHHh-ccccHHHHHHHhcC
Q psy2887 705 NKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIYY-KKYLMIHAGVAKQWTAQQTIKLSHQVEKIL-RTSYWKNLFFKLYN 782 (899)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~-~~~~~vHAg~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~ 782 (899)
. .+.+.+.-.+.-...+-+.+.-+|+.-.+ +++...|||+.|....-+.....+...+.- .++.
T Consensus 140 y----declRkyg~anvw~~Ftdlfdy~P~tali~~~ifc~HGgLspsi~tld~~r~~dr~~evphegpm---------- 205 (319)
T KOG0371|consen 140 Y----DECLRKYGNANVWKYFTDLFDYLPLTALIESKIFCLHGGLSPSIDTLDLIRLLDRIQEVPHEGPM---------- 205 (319)
T ss_pred H----HHHHhhcccccchHHhhhhhhccchHhhhccceeeccCCcCcccchHHHHHHHHHhhcccCCCCh----------
Confidence 1 11122222222244555666677876444 488999999999776544443333322211 1111
Q ss_pred CCCCCCCccc----ccccccchhhHHHHHhhhccccccCCCCccccccccCCCCCCCCCCCCCccCCCCC--CCCceEEE
Q psy2887 783 HNSINWDNHL----HTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRK--TIDITVLF 856 (899)
Q Consensus 783 ~~~~~w~~~~----~~~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~~~~~~--~~~~~vv~ 856 (899)
.+..|++.- |.+-+++. .++.-..-.+.|.+.+|. ..... .....+.+..|+..|+.. ...+.++|
T Consensus 206 -cDlLwsdpddr~gwg~sprga---g~tfg~di~~~fn~~n~l-slisR---ahqlvm~g~nW~~~~~~vtiFSapnycY 277 (319)
T KOG0371|consen 206 -CDLLWSDPDDRCGWGISPRGA---GYTFGQDISEQFNHKNGL-SLISR---AHQLVMEGYNWYHLWNVVTIFSAPNYCY 277 (319)
T ss_pred -hheeccCcccCCCCCCCCCCC---CcccchhhHHHhhccCCc-hHhHH---HHHHHhcccceeeecceeEEccCCchhh
Confidence 222343221 11111111 112222334445544442 11111 012236788999999863 46788999
Q ss_pred ccCCCCCcccCCCeEEccccccc
Q psy2887 857 GHWSTLGLIMKPNIICLDTGCVW 879 (899)
Q Consensus 857 GH~~~~~~~~~~~~~~iDtG~v~ 879 (899)
||.+..++.....+.+.|+-|..
T Consensus 278 rcgn~a~i~e~d~~~~~~f~q~~ 300 (319)
T KOG0371|consen 278 RCGNQAAIMERDDTKNYDFLQFD 300 (319)
T ss_pred ccccHHHHhhhhhccCcceEEec
Confidence 99999887766666555655543
No 296
>KOG0743|consensus
Probab=99.34 E-value=6.2e-12 Score=134.29 Aligned_cols=170 Identities=21% Similarity=0.337 Sum_probs=116.6
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCC-CEEEEEcc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKP-YSLILLDE 498 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~-~~vl~lDE 498 (899)
..|||||||||||++..|||+.| +..+.-++.++..+... |...+...+ .+||+|++
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L---~ydIydLeLt~v~~n~d-------------------Lr~LL~~t~~kSIivIED 294 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYL---NYDIYDLELTEVKLDSD-------------------LRHLLLATPNKSILLIED 294 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhc---CCceEEeeeccccCcHH-------------------HHHHHHhCCCCcEEEEee
Confidence 49999999999999999999999 88888888887765433 444444443 46999999
Q ss_pred ccccCH------------------HHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHH
Q psy2887 499 IEKANS------------------DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAV 560 (899)
Q Consensus 499 id~~~~------------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~ 560 (899)
||..-. -.++.||..+|.-- . .. -...|||||||.
T Consensus 295 IDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlw-S-sc-----g~ERIivFTTNh-------------------- 347 (457)
T KOG0743|consen 295 IDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLW-S-SC-----GDERIIVFTTNH-------------------- 347 (457)
T ss_pred cccccccccccccccccccCCcceeehHHhhhhhcccc-c-cC-----CCceEEEEecCC--------------------
Confidence 985521 24677888888511 1 10 135689999995
Q ss_pred HHHHhhcCChhHhh--ccCeEEEecCCCHHHHHHHHHHHHHH-----HHHHHHhcCcceeecH-HHHHHHHhcccCcccc
Q psy2887 561 MNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNI-----LKNKLLKMNMDLKISK-AALKKISNIGFDLIYG 632 (899)
Q Consensus 561 ~~~l~~~~~~~l~~--R~~~~i~f~~l~~~~~~~i~~~~l~~-----~~~~~~~~~~~~~~~~-~~~~~L~~~~~~~~~~ 632 (899)
.++++|+|+. |+|..|.+...+.+.++.++.++|.- +...+.+.-....++| ++.+.|+... .
T Consensus 348 ----~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~~tPA~V~e~lm~~~--~--- 418 (457)
T KOG0743|consen 348 ----KEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETEVTPAQVAEELMKNK--N--- 418 (457)
T ss_pred ----hhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCccCHHHHHHHHhhcc--c---
Confidence 4468999995 99999999999999999999998853 2222322111345566 4555555511 1
Q ss_pred cccccccHHHHHHHHHH
Q psy2887 633 ARDVHGCKKSLSILLKK 649 (899)
Q Consensus 633 ~~di~~~~~~l~~~l~~ 649 (899)
|...++..|.+.|+.
T Consensus 419 --dad~~lk~Lv~~l~~ 433 (457)
T KOG0743|consen 419 --DADVALKGLVEALES 433 (457)
T ss_pred --cHHHHHHHHHHHHHh
Confidence 555554444444433
No 297
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=8.2e-11 Score=136.11 Aligned_cols=174 Identities=20% Similarity=0.208 Sum_probs=125.2
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCC---CCc-------------------cCCCeEEEEehhhhhcCcccCch
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEV---PNS-------------------LLSKKILLLDIALLLAGTKYRGE 68 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~---p~~-------------------l~~~~~~~~~~~~l~~~~~~~g~ 68 (899)
+-...+||+||+||||||+|+.+|+.+..... |.. ..+..+..++. ....+
T Consensus 36 ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~------~s~~~- 108 (620)
T PRK14954 36 RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDA------ASNNS- 108 (620)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEecc------cccCC-
Confidence 44445899999999999999999999854210 000 00112222221 11111
Q ss_pred HHHHHHHHHHHHH---hcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHH
Q psy2887 69 FEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAF 143 (899)
Q Consensus 69 ~~~~l~~~~~~~~---~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al 143 (899)
...++++.+.+. -.+..-|++|||+|.|.. ...+.|+.+|+. +.+++|++|+... .+-+++
T Consensus 109 -vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~--------~a~naLLK~LEePp~~tv~IL~t~~~~-----kLl~TI 174 (620)
T PRK14954 109 -VDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST--------AAFNAFLKTLEEPPPHAIFIFATTELH-----KIPATI 174 (620)
T ss_pred -HHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH--------HHHHHHHHHHhCCCCCeEEEEEeCChh-----hhhHHH
Confidence 235666666653 123356999999999953 567889999987 4677777777655 777899
Q ss_pred HhccccccccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhh
Q psy2887 144 ERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 215 (899)
Q Consensus 144 ~~Rf~~i~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~ 215 (899)
.+|+..+.|..++.++...+++.+++. .++.++++++..++..+++.+. .+...++..+...
T Consensus 175 ~SRc~~vef~~l~~~ei~~~L~~i~~~----egi~I~~eal~~La~~s~Gdlr------~al~eLeKL~~y~ 236 (620)
T PRK14954 175 ASRCQRFNFKRIPLDEIQSQLQMICRA----EGIQIDADALQLIARKAQGSMR------DAQSILDQVIAFS 236 (620)
T ss_pred HhhceEEecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhCCCHH------HHHHHHHHHHHhc
Confidence 999999999999999999999887775 5788999999999999988766 7888888776654
No 298
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.33 E-value=1.5e-11 Score=137.96 Aligned_cols=173 Identities=17% Similarity=0.299 Sum_probs=118.5
Q ss_pred eEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEcc
Q psy2887 419 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDE 498 (899)
Q Consensus 419 ~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDE 498 (899)
.+++|+||||+|||+|++++++.+...+.++++++...+..... ..+ .. + ....+.... ...+||+|||
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~-~~l-~~-----~--~~~~f~~~~--~~~dvLiIDD 210 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLV-SAI-RS-----G--EMQRFRQFY--RNVDALFIED 210 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHH-HHH-hc-----c--hHHHHHHHc--ccCCEEEEcc
Confidence 46999999999999999999999876678888888766643211 101 00 0 001122222 2346999999
Q ss_pred ccccCH--HHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhcc
Q psy2887 499 IEKANS--DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRI 576 (899)
Q Consensus 499 id~~~~--~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~ 576 (899)
++.+.. ..+..|+.+++.-. ..+..+|+||+..+..+.. +.+.|.+||
T Consensus 211 iq~l~~k~~~qeelf~l~N~l~----------~~~k~IIlts~~~p~~l~~--------------------l~~rL~SR~ 260 (445)
T PRK12422 211 IEVFSGKGATQEEFFHTFNSLH----------TEGKLIVISSTCAPQDLKA--------------------MEERLISRF 260 (445)
T ss_pred hhhhcCChhhHHHHHHHHHHHH----------HCCCcEEEecCCCHHHHhh--------------------hHHHHHhhh
Confidence 998854 46777777766311 1234688899877664432 567799999
Q ss_pred C--eEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 577 D--DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 577 ~--~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
. .++.+.|++.+++..|++..+.. .+ +.++++++++|+...- .++|.+.|+ |.++.
T Consensus 261 ~~Gl~~~l~~pd~e~r~~iL~~k~~~-------~~--~~l~~evl~~la~~~~---~dir~L~g~---l~~l~ 318 (445)
T PRK12422 261 EWGIAIPLHPLTKEGLRSFLERKAEA-------LS--IRIEETALDFLIEALS---SNVKSLLHA---LTLLA 318 (445)
T ss_pred cCCeEEecCCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHhcC---CCHHHHHHH---HHHHH
Confidence 5 69999999999999998877643 33 7899999999988322 345566665 55553
No 299
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=8.1e-12 Score=135.76 Aligned_cols=163 Identities=18% Similarity=0.274 Sum_probs=108.0
Q ss_pred ccCCC-hHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCC--ceEEecccc---cccc-
Q psy2887 388 KRVVG-QDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE--SIIRIDMSE---FIEK- 460 (899)
Q Consensus 388 ~~v~g-q~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~--~~~~~~~~~---~~~~- 460 (899)
..|+| |+.+++.+...+...+. .+.+||+||+|+||+++|+.+|+.++.... ...+-.|.. +...
T Consensus 5 ~~i~~~q~~~~~~L~~~~~~~~l--------~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~ 76 (329)
T PRK08058 5 EQLTALQPVVVKMLQNSIAKNRL--------SHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGN 76 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCC--------CceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCC
Confidence 34556 99999999999875432 235799999999999999999999954321 001111111 1100
Q ss_pred cchhhccCCCCCcccccccchhhHHHH----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEE
Q psy2887 461 HSISRLIGAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVM 536 (899)
Q Consensus 461 ~~~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ 536 (899)
+....++......++.++.+.+.+.+. .+...|++|||+|++....+|.||+.||+ +..++++|+
T Consensus 77 hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEE-----------Pp~~~~~Il 145 (329)
T PRK08058 77 HPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEE-----------PSGGTTAIL 145 (329)
T ss_pred CCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcC-----------CCCCceEEE
Confidence 000011111111122222233443333 23457999999999999999999999998 567888998
Q ss_pred ecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHH
Q psy2887 537 TSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIA 594 (899)
Q Consensus 537 tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~ 594 (899)
+|+... .+.|.+.||+ .++.|.|++.+++.+++
T Consensus 146 ~t~~~~------------------------~ll~TIrSRc-~~i~~~~~~~~~~~~~L 178 (329)
T PRK08058 146 LTENKH------------------------QILPTILSRC-QVVEFRPLPPESLIQRL 178 (329)
T ss_pred EeCChH------------------------hCcHHHHhhc-eeeeCCCCCHHHHHHHH
Confidence 888432 3566799999 89999999999986664
No 300
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=1.5e-11 Score=135.33 Aligned_cols=156 Identities=13% Similarity=0.139 Sum_probs=106.0
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCC---CC----------ccCCCeEEEEehhhhhcCcccCchHHHHHHHHHH
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEV---PN----------SLLSKKILLLDIALLLAGTKYRGEFEDRLKKILK 78 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~---p~----------~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~ 78 (899)
.+..+||+||||+|||++|+++|+.+..... |. .-....+..+.... ... ....++++++
T Consensus 35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~-----~~i--~i~~iR~l~~ 107 (394)
T PRK07940 35 MTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEG-----LSI--GVDEVRELVT 107 (394)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEecccc-----ccC--CHHHHHHHHH
Confidence 4556899999999999999999998754321 00 00111222232211 111 1234777777
Q ss_pred HHHh---cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC--ceEEEEecChhHHHHhhhcCHHHHhcccccccc
Q psy2887 79 EISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG--ELHCIGATTLNEYRQYIEKDAAFERRFQKILVE 153 (899)
Q Consensus 79 ~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~--~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~ 153 (899)
.+.. .+...|+||||+|.|.. .+.|.|+..|+.. ..++|.+|+.+. .+.|+++|||..+.|+
T Consensus 108 ~~~~~p~~~~~kViiIDead~m~~--------~aanaLLk~LEep~~~~~fIL~a~~~~-----~llpTIrSRc~~i~f~ 174 (394)
T PRK07940 108 IAARRPSTGRWRIVVIEDADRLTE--------RAANALLKAVEEPPPRTVWLLCAPSPE-----DVLPTIRSRCRHVALR 174 (394)
T ss_pred HHHhCcccCCcEEEEEechhhcCH--------HHHHHHHHHhhcCCCCCeEEEEECChH-----HChHHHHhhCeEEECC
Confidence 7652 23456999999999964 5668899999862 455555555566 7899999999999999
Q ss_pred CCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcc
Q psy2887 154 EPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYIS 196 (899)
Q Consensus 154 ~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (899)
+|+.++..++|..- ..++++....++.+++++..
T Consensus 175 ~~~~~~i~~~L~~~---------~~~~~~~a~~la~~s~G~~~ 208 (394)
T PRK07940 175 TPSVEAVAEVLVRR---------DGVDPETARRAARASQGHIG 208 (394)
T ss_pred CCCHHHHHHHHHHh---------cCCCHHHHHHHHHHcCCCHH
Confidence 99999988887621 12567777888888887654
No 301
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=9.4e-11 Score=136.53 Aligned_cols=171 Identities=19% Similarity=0.193 Sum_probs=124.1
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCC----cc------------CCCeEEEEehhhhhcCcccCchHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPN----SL------------LSKKILLLDIALLLAGTKYRGEFEDRLK 74 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~----~l------------~~~~~~~~~~~~l~~~~~~~g~~~~~l~ 74 (899)
+...++||+||+|+|||++|+++|+.+....... .. ....++.++.. .+.....++
T Consensus 36 rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~--------~~~~vd~IR 107 (620)
T PRK14948 36 RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAA--------SNTGVDNIR 107 (620)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEecc--------ccCCHHHHH
Confidence 3446789999999999999999999985421100 00 01122333211 122334678
Q ss_pred HHHHHHHhc---CCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhcccc
Q psy2887 75 KILKEISNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQK 149 (899)
Q Consensus 75 ~~~~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~ 149 (899)
++++.+... +...|+||||+|.|.. ++.+.|+..|+. ..+++|++|+... .+-+++++||..
T Consensus 108 eii~~a~~~p~~~~~KViIIDEad~Lt~--------~a~naLLK~LEePp~~tvfIL~t~~~~-----~llpTIrSRc~~ 174 (620)
T PRK14948 108 ELIERAQFAPVQARWKVYVIDECHMLST--------AAFNALLKTLEEPPPRVVFVLATTDPQ-----RVLPTIISRCQR 174 (620)
T ss_pred HHHHHHhhChhcCCceEEEEECccccCH--------HHHHHHHHHHhcCCcCeEEEEEeCChh-----hhhHHHHhheeE
Confidence 887766522 3356999999999953 577889999986 4688888888766 678899999999
Q ss_pred ccccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHH
Q psy2887 150 ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAA 212 (899)
Q Consensus 150 i~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~ 212 (899)
+.|..++.++...++..+..+ .++.++++++..+++.+.+.+. .+..+++...
T Consensus 175 ~~f~~l~~~ei~~~L~~ia~k----egi~is~~al~~La~~s~G~lr------~A~~lLekls 227 (620)
T PRK14948 175 FDFRRIPLEAMVQHLSEIAEK----ESIEIEPEALTLVAQRSQGGLR------DAESLLDQLS 227 (620)
T ss_pred EEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCCHH------HHHHHHHHHH
Confidence 999999999988888877765 5678999999999999877554 7777777643
No 302
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.32 E-value=8.4e-12 Score=124.04 Aligned_cols=247 Identities=17% Similarity=0.265 Sum_probs=155.7
Q ss_pred hhccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHh---ccCCCceEEecccccccccc
Q psy2887 386 LCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACI---FNNEESIIRIDMSEFIEKHS 462 (899)
Q Consensus 386 l~~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l---~~~~~~~~~~~~~~~~~~~~ 462 (899)
|+..|.-...+.....+.|.+.... ...++||.||+|.||+.||+.|-+.- ..-.++|+.+||..+.....
T Consensus 182 lksgiatrnp~fnrmieqierva~r------sr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~a 255 (531)
T COG4650 182 LKSGIATRNPHFNRMIEQIERVAIR------SRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTA 255 (531)
T ss_pred HHhcccccChHHHHHHHHHHHHHhh------ccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchH
Confidence 4455555555555555555443321 12359999999999999998874432 11268999999999999999
Q ss_pred hhhccCCCCC-cccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCC-CceEecCCeEEEEecCC
Q psy2887 463 ISRLIGAPPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNR-GRTINFRNTIIVMTSNL 540 (899)
Q Consensus 463 ~~~l~g~~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~-g~~~~~~~~~iI~tsn~ 540 (899)
++.+||+..| +.|..+. -...++.+.+++||+|||..+..+-|..||+.+|+.++..-. .+.+ .++.-+|+.|-.
T Consensus 256 msalfghvkgaftga~~~--r~gllrsadggmlfldeigelgadeqamllkaieekrf~pfgsdr~v-~sdfqliagtvr 332 (531)
T COG4650 256 MSALFGHVKGAFTGARES--REGLLRSADGGMLFLDEIGELGADEQAMLLKAIEEKRFYPFGSDRQV-SSDFQLIAGTVR 332 (531)
T ss_pred HHHHHhhhccccccchhh--hhhhhccCCCceEehHhhhhcCccHHHHHHHHHHhhccCCCCCcccc-ccchHHhhhhHH
Confidence 9999998766 3443332 346678888999999999999999999999999998877533 2222 233334444332
Q ss_pred ChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCC----HHHHHHHHHHHHHHHHHHHHhcCcceeecH
Q psy2887 541 GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLN----RKNILSIANIQLNILKNKLLKMNMDLKISK 616 (899)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~----~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 616 (899)
..... .-++.|+.+|+.|+ +...|.-+. +++++.-++..|.+. ....|-.+.+..
T Consensus 333 dlrq~-----------------vaeg~fredl~ari-nlwtf~lpgl~qr~ediepnldyelerh---a~~~g~~vrfnt 391 (531)
T COG4650 333 DLRQL-----------------VAEGKFREDLYARI-NLWTFTLPGLRQRQEDIEPNLDYELERH---ASLTGDSVRFNT 391 (531)
T ss_pred HHHHH-----------------HhccchHHHHHHhh-heeeeeccccccCccccCCCccHHHHHH---HHhhCceeeeeh
Confidence 22211 12568999999999 555555543 355555555555443 334566788888
Q ss_pred HHHHHHHhcccCcccccccccccHHHHHHHHHHhhccCCccceeeccccCCCCceEehhHH
Q psy2887 617 AALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLR 677 (899)
Q Consensus 617 ~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~~~ 677 (899)
++........-++.- -..|++.+|..-+... .-+-|.|.+..++++
T Consensus 392 earra~l~fa~spqa---~w~gnfrelsasvtrm------------atlad~grit~~~ve 437 (531)
T COG4650 392 EARRAWLAFATSPQA---TWRGNFRELSASVTRM------------ATLADSGRITLDVVE 437 (531)
T ss_pred HHHHHHHHhccCcch---hhcccHHHHhHHHHHH------------HHHhcCCceeHHHHH
Confidence 877665543333321 1234444444444111 134567777766664
No 303
>KOG1942|consensus
Probab=99.32 E-value=2e-11 Score=121.43 Aligned_cols=104 Identities=22% Similarity=0.320 Sum_probs=82.1
Q ss_pred CEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCCh
Q psy2887 491 YSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRP 570 (899)
Q Consensus 491 ~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 570 (899)
++||||||++.++-+++..|.+.+|. .-..++|++||.|...+....+- .--..+++
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~kalES------------~iaPivifAsNrG~~~irGt~d~-----------~sPhGip~ 353 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFTYLHKALES------------PIAPIVIFASNRGMCTIRGTEDI-----------LSPHGIPP 353 (456)
T ss_pred CcceEeeehhhhhhHHHHHHHHHhcC------------CCCceEEEecCCcceeecCCcCC-----------CCCCCCCH
Confidence 79999999999999999999999996 34568999999876654432110 00124689
Q ss_pred hHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhccc
Q psy2887 571 EFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGF 627 (899)
Q Consensus 571 ~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 627 (899)
+|++|+ .+|...+++++++++|+.... ..++ +.+++++++.|...+.
T Consensus 354 dllDRl-~Iirt~~y~~~e~r~Ii~~Ra-------~~E~--l~~~e~a~~~l~~~gt 400 (456)
T KOG1942|consen 354 DLLDRL-LIIRTLPYDEEEIRQIIKIRA-------QVEG--LQVEEEALDLLAEIGT 400 (456)
T ss_pred HHhhhe-eEEeeccCCHHHHHHHHHHHH-------hhhc--ceecHHHHHHHHhhcc
Confidence 999999 899999999999999987655 2344 7889999999998554
No 304
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.31 E-value=4.3e-11 Score=135.52 Aligned_cols=185 Identities=18% Similarity=0.210 Sum_probs=114.6
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccc-----
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHS----- 462 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~----- 462 (899)
.+++||..+++.+..++... .+++|.||||||||++|+.++..+...... ..++...+.+...
T Consensus 192 ~dv~Gq~~~~~al~~aa~~g-----------~~vlliG~pGsGKTtlar~l~~llp~~~~~-~~le~~~i~s~~g~~~~~ 259 (499)
T TIGR00368 192 KDIKGQQHAKRALEIAAAGG-----------HNLLLFGPPGSGKTMLASRLQGILPPLTNE-EAIETARIWSLVGKLIDR 259 (499)
T ss_pred HHhcCcHHHHhhhhhhccCC-----------CEEEEEecCCCCHHHHHHHHhcccCCCCCc-EEEeccccccchhhhccc
Confidence 56789999988777665421 279999999999999999999877432211 1222222211000
Q ss_pred --h--hhcc-----CCCCCcccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceec--CCCceEecCC
Q psy2887 463 --I--SRLI-----GAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTD--NRGRTINFRN 531 (899)
Q Consensus 463 --~--~~l~-----g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~--~~g~~~~~~~ 531 (899)
. ..+. ......+|... ..-...+..+.++||||||++.+++.+++.|++.||++.+.. ..+......+
T Consensus 260 ~~~~~~Pf~~p~~s~s~~~~~ggg~-~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~ 338 (499)
T TIGR00368 260 KQIKQRPFRSPHHSASKPALVGGGP-IPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPAR 338 (499)
T ss_pred cccccCCccccccccchhhhhCCcc-ccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCC
Confidence 0 0000 00001111100 012234566777999999999999999999999999998652 2233334468
Q ss_pred eEEEEecCCChhhhhh----hhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHH
Q psy2887 532 TIIVMTSNLGSDKIKE----MEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNI 590 (899)
Q Consensus 532 ~~iI~tsn~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~ 590 (899)
..+|+++|..+..... .|.-+..++.++ ...++..|++|||..+.+++++.+++
T Consensus 339 frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y-----~~~is~pllDR~dl~~~~~~~~~~~l 396 (499)
T TIGR00368 339 FQLVAAMNPCPCGHYGGKNTHCRCSPQQISRY-----WNKLSGPFLDRIDLSVEVPLLPPEKL 396 (499)
T ss_pred eEEEEecCCcccCcCCCCcccccCCHHHHHHH-----hhhccHhHHhhCCEEEEEcCCCHHHH
Confidence 8899999964321111 111123333333 45788999999999999999877655
No 305
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.31 E-value=6.3e-11 Score=129.41 Aligned_cols=172 Identities=19% Similarity=0.346 Sum_probs=114.6
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhcc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 467 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (899)
.++++.+..++.+..++.... +++|+||||||||++|+.+|..+.+. ..+..+++..+....+...++
T Consensus 175 ~d~~i~e~~le~l~~~L~~~~-----------~iil~GppGtGKT~lA~~la~~l~~~-~~~~~v~~VtFHpsySYeDFI 242 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIKK-----------NIILQGPPGVGKTFVARRLAYLLTGE-KAPQRVNMVQFHQSYSYEDFI 242 (459)
T ss_pred hcccCCHHHHHHHHHHHhcCC-----------CEEEECCCCCCHHHHHHHHHHHhcCC-cccceeeEEeecccccHHHHh
Confidence 457788888888877776422 69999999999999999999998542 234455555555555555555
Q ss_pred -CCCCCccccccc-chhhH---HHHhC--CCEEEEEccccccCHH-HHHHHHHhhcCCc------ee----cCCC-ceEe
Q psy2887 468 -GAPPGYIGYEEG-GYLTE---IVRRK--PYSLILLDEIEKANSD-VFNILLQILDDGR------LT----DNRG-RTIN 528 (899)
Q Consensus 468 -g~~~~~~g~~~~-~~l~~---~~~~~--~~~vl~lDEid~~~~~-~~~~Ll~~le~g~------~~----~~~g-~~~~ 528 (899)
|..++.+|+... +.+.+ .+... .+.|||||||++.+.. ++..|+++||.+. +. ...+ .-..
T Consensus 243 ~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~i 322 (459)
T PRK11331 243 QGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYV 322 (459)
T ss_pred cccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccC
Confidence 666666776544 22322 33332 3579999999999965 6899999998631 11 1111 2233
Q ss_pred cCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecC-CCHHHHHH
Q psy2887 529 FRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRY-LNRKNILS 592 (899)
Q Consensus 529 ~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~-l~~~~~~~ 592 (899)
..|+.||+|.|.....+ ..++.+|.+|| ..|.+.| ++...+++
T Consensus 323 P~Nl~IIgTMNt~Drs~--------------------~~lD~AlrRRF-~fi~i~p~~~~~~~~~ 366 (459)
T PRK11331 323 PENVYIIGLMNTADRSL--------------------AVVDYALRRRF-SFIDIEPGFDTPQFRN 366 (459)
T ss_pred CCCeEEEEecCccccch--------------------hhccHHHHhhh-heEEecCCCChHHHHH
Confidence 58899999999654321 13688899999 6677766 55444443
No 306
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.31 E-value=5e-11 Score=133.20 Aligned_cols=217 Identities=18% Similarity=0.213 Sum_probs=134.6
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccC--C----CceEEeccccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN--E----ESIIRIDMSEFIEKH 461 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~--~----~~~~~~~~~~~~~~~ 461 (899)
+.++|++..++.|...+.....+ ..+ ++++++||||||||++++.+++.+... + ..++.++|....+..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~----~~~-~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~ 89 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRG----SRP-SNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLY 89 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcC----CCC-CcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHH
Confidence 57889999999999998765432 122 269999999999999999999877321 1 467888987765432
Q ss_pred ch-----hhcc--CCCCCccccccc---chhhHHHHh-CCCEEEEEccccccCH---HHHHHHHHhhcCCceecCCCceE
Q psy2887 462 SI-----SRLI--GAPPGYIGYEEG---GYLTEIVRR-KPYSLILLDEIEKANS---DVFNILLQILDDGRLTDNRGRTI 527 (899)
Q Consensus 462 ~~-----~~l~--g~~~~~~g~~~~---~~l~~~~~~-~~~~vl~lDEid~~~~---~~~~~Ll~~le~g~~~~~~g~~~ 527 (899)
.. ..+. |......|.... ..+.+.+.. .++.||+|||+|.+.. .++..|+...+... .
T Consensus 90 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~--------~ 161 (365)
T TIGR02928 90 QVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGD--------L 161 (365)
T ss_pred HHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccC--------C
Confidence 11 1222 221111121111 223344433 3456999999999953 33334443321111 1
Q ss_pred ecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccC-eEEEecCCCHHHHHHHHHHHHHHHHHHHH
Q psy2887 528 NFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRID-DIIVFRYLNRKNILSIANIQLNILKNKLL 606 (899)
Q Consensus 528 ~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~-~~i~f~~l~~~~~~~i~~~~l~~~~~~~~ 606 (899)
...++.+|+++|.... ...+.+.+.+||. ..+.|+|++.+++.+|+...+...
T Consensus 162 ~~~~v~lI~i~n~~~~---------------------~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~----- 215 (365)
T TIGR02928 162 DNAKVGVIGISNDLKF---------------------RENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKA----- 215 (365)
T ss_pred CCCeEEEEEEECCcch---------------------HhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhh-----
Confidence 2246778888885321 2235666778884 589999999999999998877421
Q ss_pred hcCcceeecHHHHHHHHhcccCcccccccccccHHHHHHHHH
Q psy2887 607 KMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLK 648 (899)
Q Consensus 607 ~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l~ 648 (899)
.....+++++++++..... ..-||++...+.+..+..
T Consensus 216 --~~~~~~~~~~l~~i~~~~~---~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 216 --FYDGVLDDGVIPLCAALAA---QEHGDARKAIDLLRVAGE 252 (365)
T ss_pred --ccCCCCChhHHHHHHHHHH---HhcCCHHHHHHHHHHHHH
Confidence 1123478888888766322 113777777666666654
No 307
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.31 E-value=4.8e-11 Score=123.73 Aligned_cols=168 Identities=15% Similarity=0.179 Sum_probs=109.2
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
....+++|+||||||||++|+++++.+... +.+++.+++..+.. ....++.... ...+|+
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~-------~~~~~~i~~~~~~~----------~~~~~~~~~~---~~~lLv 95 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEER-------GKSAIYLPLAELAQ----------ADPEVLEGLE---QADLVC 95 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhc-------CCcEEEEeHHHHHH----------hHHHHHhhcc---cCCEEE
Confidence 456789999999999999999999987543 45677788766641 1123333332 234999
Q ss_pred EccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcC-HHHHhccc---cccccCCCHHHHHHHHHh
Q psy2887 91 IDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKD-AAFERRFQ---KILVEEPDIEETISILRG 166 (899)
Q Consensus 91 iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld-~al~~Rf~---~i~l~~p~~~e~~~il~~ 166 (899)
|||++.+.... .........+....+.+. .+|.+++... . ..... +.|.+||. .+.+++|+.+++..+++.
T Consensus 96 IDdi~~l~~~~--~~~~~L~~~l~~~~~~~~-~iIits~~~~-~-~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~ 170 (226)
T TIGR03420 96 LDDVEAIAGQP--EWQEALFHLYNRVREAGG-RLLIAGRAAP-A-QLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQS 170 (226)
T ss_pred EeChhhhcCCh--HHHHHHHHHHHHHHHcCC-eEEEECCCCh-H-HCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHH
Confidence 99999985421 001223333333333344 4444444322 1 11233 78998885 488999999999999987
Q ss_pred hhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHH
Q psy2887 167 LQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAA 213 (899)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~ 213 (899)
.+.. .++.+++++++.++..+.+.+. .+..+++.+..
T Consensus 171 ~~~~----~~~~~~~~~l~~L~~~~~gn~r------~L~~~l~~~~~ 207 (226)
T TIGR03420 171 RAAR----RGLQLPDEVADYLLRHGSRDMG------SLMALLDALDR 207 (226)
T ss_pred HHHH----cCCCCCHHHHHHHHHhccCCHH------HHHHHHHHHHH
Confidence 6654 4678999999999887766443 66666665543
No 308
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.31 E-value=1.9e-11 Score=140.90 Aligned_cols=176 Identities=21% Similarity=0.234 Sum_probs=115.6
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcc-----cCchHHH---------------
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTK-----YRGEFED--------------- 71 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~-----~~g~~~~--------------- 71 (899)
...++||+||||||||++|+++++..........-.+.+++.+++........ ..|....
T Consensus 85 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~ 164 (531)
T TIGR02902 85 NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIP 164 (531)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcc
Confidence 45689999999999999999998765432111111246788888753210000 0000000
Q ss_pred -HHHHHHHHHHhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC------------------------------
Q psy2887 72 -RLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG------------------------------ 120 (899)
Q Consensus 72 -~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~------------------------------ 120 (899)
.....+.. ..+++|||||++.|.. ..++.|+..|+.+
T Consensus 165 ~~~~G~l~~----a~gG~L~IdEI~~L~~--------~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (531)
T TIGR02902 165 QPKPGAVTR----AHGGVLFIDEIGELHP--------VQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPA 232 (531)
T ss_pred cccCchhhc----cCCcEEEEechhhCCH--------HHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCccc
Confidence 00001111 2356999999999965 4556666665432
Q ss_pred ceEEEEecCh-hHHHHhhhcCHHHHhccccccccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCC
Q psy2887 121 ELHCIGATTL-NEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRF 199 (899)
Q Consensus 121 ~v~vI~at~~-~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (899)
++.+|++|+. ++ .++|++++||..+.|++++.+++.+|++..+++ .++.+++++++.+...+..
T Consensus 233 d~rlI~ATt~~p~-----~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k----~~i~is~~al~~I~~y~~n------ 297 (531)
T TIGR02902 233 DFRLIGATTRNPE-----EIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEK----IGINLEKHALELIVKYASN------ 297 (531)
T ss_pred ceEEEEEecCCcc-----cCChHHhhhhheeeCCCCCHHHHHHHHHHHHHH----cCCCcCHHHHHHHHHhhhh------
Confidence 3466766655 44 789999999998999999999999999988876 4578999999877665531
Q ss_pred CchhHHHHHHHHHHhh
Q psy2887 200 MPDKAIDLIDEAAAKI 215 (899)
Q Consensus 200 ~p~~~~~ll~~a~~~~ 215 (899)
...+.++++.|+..+
T Consensus 298 -~Rel~nll~~Aa~~A 312 (531)
T TIGR02902 298 -GREAVNIVQLAAGIA 312 (531)
T ss_pred -HHHHHHHHHHHHHHH
Confidence 246777777776543
No 309
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.31 E-value=5.9e-11 Score=135.96 Aligned_cols=189 Identities=16% Similarity=0.145 Sum_probs=122.5
Q ss_pred CCCCe-EEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhc-------------Cc-ccCc-hHHHHHHH
Q psy2887 12 FTSNP-VLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA-------------GT-KYRG-EFEDRLKK 75 (899)
Q Consensus 12 ~~~~i-LL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~-------------~~-~~~g-~~~~~l~~ 75 (899)
.++++ +++|+||||||++++.+.+++........+....++.++|..+.. +. ...| .....+..
T Consensus 779 gpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLer 858 (1164)
T PTZ00112 779 GSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDR 858 (1164)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHH
Confidence 34465 599999999999999999887532111112245677777733210 11 0111 23345666
Q ss_pred HHHHHHh-cCCCEEEEEccccccccCCCCCchhhHH-Hhhh-hhhcCCceEEEEecChhHHHHhhhcCHHHHhcccc--c
Q psy2887 76 ILKEISN-NQKDIIIFIDELHTMIGTGKVEGSIDAG-NMLK-PELSRGELHCIGATTLNEYRQYIEKDAAFERRFQK--I 150 (899)
Q Consensus 76 ~~~~~~~-~~~~~iL~iDEi~~l~~~~~~~~~~~~~-~~l~-~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~--i 150 (899)
+|..+.. .....||+|||+|.|.... +++. +.+. .......+.+|+++|..++.. .++|.+++||.. |
T Consensus 859 LF~~L~k~~r~v~IIILDEID~L~kK~-----QDVLYnLFR~~~~s~SKLiLIGISNdlDLpe--rLdPRLRSRLg~eeI 931 (1164)
T PTZ00112 859 LFNQNKKDNRNVSILIIDEIDYLITKT-----QKVLFTLFDWPTKINSKLVLIAISNTMDLPE--RLIPRCRSRLAFGRL 931 (1164)
T ss_pred HHhhhhcccccceEEEeehHhhhCccH-----HHHHHHHHHHhhccCCeEEEEEecCchhcch--hhhhhhhhccccccc
Confidence 7766532 2335699999999997632 2322 2221 112346799999999765433 567899999974 8
Q ss_pred cccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 151 LVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 151 ~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
.|++++.+|+.+||+..++.. ...++++++..+++.+...-+ -.++|+++|..|+..
T Consensus 932 vF~PYTaEQL~dILk~RAe~A----~gVLdDdAIELIArkVAq~SG---DARKALDILRrAgEi 988 (1164)
T PTZ00112 932 VFSPYKGDEIEKIIKERLENC----KEIIDHTAIQLCARKVANVSG---DIRKALQICRKAFEN 988 (1164)
T ss_pred cCCCCCHHHHHHHHHHHHHhC----CCCCCHHHHHHHHHhhhhcCC---HHHHHHHHHHHHHhh
Confidence 899999999999998877652 235899999999886554322 123677888777753
No 310
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.31 E-value=1.2e-11 Score=139.27 Aligned_cols=176 Identities=19% Similarity=0.258 Sum_probs=119.5
Q ss_pred eEEEEecCCCChHHHHHHHHHHHhc--cCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHh-CCCEEEE
Q psy2887 419 GSFMFLGPTGVGKTELCKTLSACIF--NNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRR-KPYSLIL 495 (899)
Q Consensus 419 ~~ill~GppGtGKT~lA~~la~~l~--~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~-~~~~vl~ 495 (899)
.+++|+|++|||||+|++++++.+. ..+..++++++.++....... ++.. .+.+...... ....+|+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~--l~~~--------~~~~~~~~~~~~~~dvLi 211 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDI--LQKT--------HKEIEQFKNEICQNDVLI 211 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHH--HHHh--------hhHHHHHHHHhccCCEEE
Confidence 4699999999999999999999874 345678888887765432111 0000 0112222111 2345999
Q ss_pred EccccccC--HHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHh
Q psy2887 496 LDEIEKAN--SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI 573 (899)
Q Consensus 496 lDEid~~~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 573 (899)
|||++.+. +..++.|+.+++.-. ..+..+|+|||..+..+ ..+.+.|.
T Consensus 212 IDDiq~l~~k~~~~e~lf~l~N~~~----------~~~k~iIltsd~~P~~l--------------------~~l~~rL~ 261 (450)
T PRK14087 212 IDDVQFLSYKEKTNEIFFTIFNNFI----------ENDKQLFFSSDKSPELL--------------------NGFDNRLI 261 (450)
T ss_pred EeccccccCCHHHHHHHHHHHHHHH----------HcCCcEEEECCCCHHHH--------------------hhccHHHH
Confidence 99999887 567888888887521 12335899999877643 23677899
Q ss_pred hccC--eEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 574 NRID--DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 574 ~R~~--~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
+||. .++.+.||+.+++.+|+++.+.. .+....++++++++|+... -||++.....+.+++
T Consensus 262 SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~-------~gl~~~l~~evl~~Ia~~~------~gd~R~L~gaL~~l~ 324 (450)
T PRK14087 262 TRFNMGLSIAIQKLDNKTATAIIKKEIKN-------QNIKQEVTEEAINFISNYY------SDDVRKIKGSVSRLN 324 (450)
T ss_pred HHHhCCceeccCCcCHHHHHHHHHHHHHh-------cCCCCCCCHHHHHHHHHcc------CCCHHHHHHHHHHHH
Confidence 9994 59999999999999999888743 3443579999999999833 234444333355555
No 311
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=1.1e-10 Score=131.83 Aligned_cols=173 Identities=22% Similarity=0.250 Sum_probs=123.2
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCcc---------------CCCeEEEEehhhhhcCcccCchHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSL---------------LSKKILLLDIALLLAGTKYRGEFEDRLKK 75 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l---------------~~~~~~~~~~~~l~~~~~~~g~~~~~l~~ 75 (899)
+.+..+||+||||+|||++|+++|+.+......... ....++.++ |....| ...++.
T Consensus 37 ~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~------g~~~~g--id~ir~ 108 (451)
T PRK06305 37 RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEID------GASHRG--IEDIRQ 108 (451)
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEee------ccccCC--HHHHHH
Confidence 344568999999999999999999998542110000 011233332 111222 123444
Q ss_pred HHHHHH---hcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhccccc
Q psy2887 76 ILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKI 150 (899)
Q Consensus 76 ~~~~~~---~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i 150 (899)
+.+.+. ......|++|||+|.+.. .+.+.|+..++. +.+++|++|+... .+.+++++|+..+
T Consensus 109 i~~~l~~~~~~~~~kvvIIdead~lt~--------~~~n~LLk~lEep~~~~~~Il~t~~~~-----kl~~tI~sRc~~v 175 (451)
T PRK06305 109 INETVLFTPSKSRYKIYIIDEVHMLTK--------EAFNSLLKTLEEPPQHVKFFLATTEIH-----KIPGTILSRCQKM 175 (451)
T ss_pred HHHHHHhhhhcCCCEEEEEecHHhhCH--------HHHHHHHHHhhcCCCCceEEEEeCChH-----hcchHHHHhceEE
Confidence 444332 124567999999999854 467789999976 5778888887765 7889999999999
Q ss_pred cccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 151 LVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 151 ~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
.|+.++.++...+++..+++ .++.++++++..++..+++.+. .+..+++.....
T Consensus 176 ~f~~l~~~el~~~L~~~~~~----eg~~i~~~al~~L~~~s~gdlr------~a~~~Lekl~~~ 229 (451)
T PRK06305 176 HLKRIPEETIIDKLALIAKQ----EGIETSREALLPIARAAQGSLR------DAESLYDYVVGL 229 (451)
T ss_pred eCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHH------HHHHHHHHHHHh
Confidence 99999999999999887765 5788999999999999987665 777777776543
No 312
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=4.9e-11 Score=132.88 Aligned_cols=174 Identities=22% Similarity=0.239 Sum_probs=122.3
Q ss_pred CCCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccC--CCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHh---cC
Q psy2887 10 FYFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLL--SKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN---NQ 84 (899)
Q Consensus 10 ~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~--~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~---~~ 84 (899)
.+.+.++||+||||+|||++|+++|+.+.....+..-. ...++.++.. . ......++.+++++.. .+
T Consensus 36 ~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~------~--~~~~~~i~~l~~~~~~~p~~~ 107 (367)
T PRK14970 36 NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAA------S--NNSVDDIRNLIDQVRIPPQTG 107 (367)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccc------c--CCCHHHHHHHHHHHhhccccC
Confidence 34556899999999999999999999885432211111 1223322211 1 1122356677776542 23
Q ss_pred CCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHHHHHH
Q psy2887 85 KDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETIS 162 (899)
Q Consensus 85 ~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~ 162 (899)
...|++|||++.+.. ...+.|+..++. ...++|++|+... .+.+++.+|+..+.+++|+.++...
T Consensus 108 ~~kiviIDE~~~l~~--------~~~~~ll~~le~~~~~~~~Il~~~~~~-----kl~~~l~sr~~~v~~~~~~~~~l~~ 174 (367)
T PRK14970 108 KYKIYIIDEVHMLSS--------AAFNAFLKTLEEPPAHAIFILATTEKH-----KIIPTILSRCQIFDFKRITIKDIKE 174 (367)
T ss_pred CcEEEEEeChhhcCH--------HHHHHHHHHHhCCCCceEEEEEeCCcc-----cCCHHHHhcceeEecCCccHHHHHH
Confidence 456999999998853 345677777765 3456777777665 7889999999999999999999999
Q ss_pred HHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 163 ILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 163 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
++...+.+ .++.++++++..++..+.+.+. .+...++..+..
T Consensus 175 ~l~~~~~~----~g~~i~~~al~~l~~~~~gdlr------~~~~~lekl~~y 216 (367)
T PRK14970 175 HLAGIAVK----EGIKFEDDALHIIAQKADGALR------DALSIFDRVVTF 216 (367)
T ss_pred HHHHHHHH----cCCCCCHHHHHHHHHhCCCCHH------HHHHHHHHHHHh
Confidence 99887775 6788999999999998876544 677777766544
No 313
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.30 E-value=8.9e-11 Score=132.42 Aligned_cols=168 Identities=15% Similarity=0.162 Sum_probs=109.9
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHH---HHHHHHHHHHHhcCCCEEE
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFE---DRLKKILKEISNNQKDIII 89 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~---~~l~~~~~~~~~~~~~~iL 89 (899)
.++++|+|++|+|||+|++++++.+.... .+..++.+....+.. ....... ..+..+..... ...+|
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~-----~~~~v~yv~~~~f~~--~~~~~l~~~~~~~~~~~~~~~---~~dvL 210 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNF-----SDLKVSYMSGDEFAR--KAVDILQKTHKEIEQFKNEIC---QNDVL 210 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhC-----CCCeEEEEEHHHHHH--HHHHHHHHhhhHHHHHHHHhc---cCCEE
Confidence 45689999999999999999999875321 156777777665541 1111111 11222222222 24499
Q ss_pred EEccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhccc---cccccCCCHHHHHHHHHh
Q psy2887 90 FIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQ---KILVEEPDIEETISILRG 166 (899)
Q Consensus 90 ~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~---~i~l~~p~~~e~~~il~~ 166 (899)
+|||++.+..+. .........+....+.+..+++.+..++.. .-.+++.|.+||. .+.+.+|+.+++.+|++.
T Consensus 211 iIDDiq~l~~k~--~~~e~lf~l~N~~~~~~k~iIltsd~~P~~--l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 211 IIDDVQFLSYKE--KTNEIFFTIFNNFIENDKQLFFSSDKSPEL--LNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred EEeccccccCCH--HHHHHHHHHHHHHHHcCCcEEEECCCCHHH--HhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 999999885422 112334455555556666444444444432 2246899999997 388999999999999998
Q ss_pred hhhhhhcccCCCCCHHHHHHHHhhhhhhcc
Q psy2887 167 LQKKYEVHHGVEITDPAIVAASELSYRYIS 196 (899)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (899)
.++... ....++++++.+++..+.+.++
T Consensus 287 ~~~~~g--l~~~l~~evl~~Ia~~~~gd~R 314 (450)
T PRK14087 287 EIKNQN--IKQEVTEEAINFISNYYSDDVR 314 (450)
T ss_pred HHHhcC--CCCCCCHHHHHHHHHccCCCHH
Confidence 877521 1236999999999999877544
No 314
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.29 E-value=2.9e-11 Score=132.68 Aligned_cols=169 Identities=24% Similarity=0.309 Sum_probs=114.3
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchH-HHHHHHHHHHHH---hcCCCE
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEF-EDRLKKILKEIS---NNQKDI 87 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~-~~~l~~~~~~~~---~~~~~~ 87 (899)
.++|+||+||||||||++|+++|+.+ +.++..+++..+. ...|.|.. +..+..++..+. ....++
T Consensus 115 ~~~~iLL~GP~GsGKT~lAraLA~~l----------~~pf~~~da~~L~-~~gyvG~d~e~~L~~~~~~~~~~l~~a~~g 183 (413)
T TIGR00382 115 SKSNILLIGPTGSGKTLLAQTLARIL----------NVPFAIADATTLT-EAGYVGEDVENILLKLLQAADYDVEKAQKG 183 (413)
T ss_pred CCceEEEECCCCcCHHHHHHHHHHhc----------CCCeEEechhhcc-ccccccccHHHHHHHHHHhCcccHHhcccc
Confidence 46799999999999999999999988 6778777776654 23477763 444455444221 123467
Q ss_pred EEEEccccccccCCCCC------chhhHHHhhhhhhcC---------------CceEEEEecChh---------------
Q psy2887 88 IIFIDELHTMIGTGKVE------GSIDAGNMLKPELSR---------------GELHCIGATTLN--------------- 131 (899)
Q Consensus 88 iL~iDEi~~l~~~~~~~------~~~~~~~~l~~~l~~---------------~~v~vI~at~~~--------------- 131 (899)
||||||+|.+.+..... .+..+++.|++.|+. ...++|.|+|-.
T Consensus 184 IV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~ 263 (413)
T TIGR00382 184 IIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIK 263 (413)
T ss_pred eEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHH
Confidence 99999999998743211 123567778888841 123456565540
Q ss_pred ----------------------HHH--------HhhhcCHHHHhcccc-ccccCCCHHHHHHHHHh----hhhhhhc---
Q psy2887 132 ----------------------EYR--------QYIEKDAAFERRFQK-ILVEEPDIEETISILRG----LQKKYEV--- 173 (899)
Q Consensus 132 ----------------------~~~--------~~~~ld~al~~Rf~~-i~l~~p~~~e~~~il~~----~~~~~~~--- 173 (899)
+.. ..+.+.|+|..|++. +.|.+++.++..+|+.. ++++|..
T Consensus 264 ~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~ 343 (413)
T TIGR00382 264 KRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFK 343 (413)
T ss_pred HHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 000 011256889999986 78999999999999865 4555442
Q ss_pred --ccCCCCCHHHHHHHHhhh
Q psy2887 174 --HHGVEITDPAIVAASELS 191 (899)
Q Consensus 174 --~~~~~~~~~~~~~~~~~~ 191 (899)
.-.+.+++++++++++.+
T Consensus 344 ~~gi~L~~t~~a~~~Ia~~~ 363 (413)
T TIGR00382 344 MDNVELDFEEEALKAIAKKA 363 (413)
T ss_pred cCCeEEEECHHHHHHHHHhC
Confidence 233579999999998874
No 315
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.29 E-value=5.4e-11 Score=131.50 Aligned_cols=171 Identities=22% Similarity=0.308 Sum_probs=114.1
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcc-----------cCch-------HHHHHHH
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTK-----------YRGE-------FEDRLKK 75 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~-----------~~g~-------~~~~l~~ 75 (899)
++++|+||||||||++|+++++.+.... ...++..+++..+..... ..+. ....++.
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~~l~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALARELYGDP-----WENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKH 111 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcc-----cccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHH
Confidence 4899999999999999999999884321 122345566554321100 0000 1223444
Q ss_pred HHHHHHhc----CCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhcccc
Q psy2887 76 ILKEISNN----QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQK 149 (899)
Q Consensus 76 ~~~~~~~~----~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~ 149 (899)
++...... ..+.+|+|||++.+.. ...+.|...++. ....+|.+++.+. .+.+.+.+|+..
T Consensus 112 ~~~~~~~~~~~~~~~~vlilDe~~~l~~--------~~~~~L~~~le~~~~~~~~Il~~~~~~-----~~~~~L~sr~~~ 178 (337)
T PRK12402 112 VLKEYASYRPLSADYKTILLDNAEALRE--------DAQQALRRIMEQYSRTCRFIIATRQPS-----KLIPPIRSRCLP 178 (337)
T ss_pred HHHHHHhcCCCCCCCcEEEEeCcccCCH--------HHHHHHHHHHHhccCCCeEEEEeCChh-----hCchhhcCCceE
Confidence 44443321 2345999999998853 334566666652 3455666666555 567889999988
Q ss_pred ccccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHH
Q psy2887 150 ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAA 212 (899)
Q Consensus 150 i~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~ 212 (899)
+.+.+|+.++...+++..+.+ .++.++++++..++..+.+.+. .++..++.++
T Consensus 179 v~~~~~~~~~~~~~l~~~~~~----~~~~~~~~al~~l~~~~~gdlr------~l~~~l~~~~ 231 (337)
T PRK12402 179 LFFRAPTDDELVDVLESIAEA----EGVDYDDDGLELIAYYAGGDLR------KAILTLQTAA 231 (337)
T ss_pred EEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHH------HHHHHHHHHH
Confidence 999999999999999988775 5778999999999998866444 5555555443
No 316
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.29 E-value=1.9e-11 Score=137.81 Aligned_cols=168 Identities=17% Similarity=0.259 Sum_probs=115.9
Q ss_pred eEEEEecCCCChHHHHHHHHHHHhccC--CCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEE
Q psy2887 419 GSFMFLGPTGVGKTELCKTLSACIFNN--EESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILL 496 (899)
Q Consensus 419 ~~ill~GppGtGKT~lA~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~l 496 (899)
.+++|+||||||||+|++++++.+... +..++++++.++....... + .. .....+.+.++. ..+|+|
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~-~-~~-------~~~~~~~~~~~~--~dlLii 205 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNA-L-RN-------NKMEEFKEKYRS--VDLLLI 205 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHH-H-Hc-------CCHHHHHHHHHh--CCEEEE
Confidence 368999999999999999999998654 5678888877764321100 0 00 011223333433 469999
Q ss_pred ccccccCH--HHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhh
Q psy2887 497 DEIEKANS--DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN 574 (899)
Q Consensus 497 DEid~~~~--~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 574 (899)
||++.+.. ..+..|+.+++.-. ..+..+|+|+|..+..+.. +.+.+.+
T Consensus 206 DDi~~l~~~~~~~~~l~~~~n~~~----------~~~~~iiits~~~p~~l~~--------------------l~~~l~S 255 (405)
T TIGR00362 206 DDIQFLAGKERTQEEFFHTFNALH----------ENGKQIVLTSDRPPKELPG--------------------LEERLRS 255 (405)
T ss_pred ehhhhhcCCHHHHHHHHHHHHHHH----------HCCCCEEEecCCCHHHHhh--------------------hhhhhhh
Confidence 99998754 45677777776411 1234578888877664432 5667899
Q ss_pred ccC--eEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCccccccccccc
Q psy2887 575 RID--DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGC 639 (899)
Q Consensus 575 R~~--~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~ 639 (899)
||. .++.|.|++.+++..|++..+.. .+ +.++++++++|++.. ...+|++.|.
T Consensus 256 Rl~~g~~v~i~~pd~~~r~~il~~~~~~-------~~--~~l~~e~l~~ia~~~---~~~~r~l~~~ 310 (405)
T TIGR00362 256 RFEWGLVVDIEPPDLETRLAILQKKAEE-------EG--LELPDEVLEFIAKNI---RSNVRELEGA 310 (405)
T ss_pred hccCCeEEEeCCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHhc---CCCHHHHHHH
Confidence 995 48999999999999998877643 33 778999999999732 2335666666
No 317
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.29 E-value=1.2e-11 Score=130.32 Aligned_cols=155 Identities=15% Similarity=0.155 Sum_probs=107.6
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHH----------HHHHHHHHh
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRL----------KKILKEISN 82 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l----------~~~~~~~~~ 82 (899)
..+|+|.||||||||++++.+|..+ +.+++.+++..........|...-.+ ...+..|.
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l----------~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~- 132 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARL----------NWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL- 132 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHH----------CCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-
Confidence 4689999999999999999999999 88888888766554444444321110 11233333
Q ss_pred cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhc----------------CCceEEEEecChhH-------HHHhhhc
Q psy2887 83 NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS----------------RGELHCIGATTLNE-------YRQYIEK 139 (899)
Q Consensus 83 ~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~----------------~~~v~vI~at~~~~-------~~~~~~l 139 (899)
..+.+|++||++...+ +..+.|...|+ ...+.+|+|+|+.+ |.....+
T Consensus 133 -~~g~illlDEin~a~p--------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l 203 (327)
T TIGR01650 133 -QHNVALCFDEYDAGRP--------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQI 203 (327)
T ss_pred -hCCeEEEechhhccCH--------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecC
Confidence 2467899999998854 34445444443 12578999999976 7778889
Q ss_pred CHHHHhcccc-ccccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhh
Q psy2887 140 DAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELS 191 (899)
Q Consensus 140 d~al~~Rf~~-i~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (899)
+++++.||.. +.++.|+.++-.+|+......+. -..++..++++++++
T Consensus 204 ~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~~~~----~~~~~~i~~~mV~la 252 (327)
T TIGR01650 204 NQAQMDRWSIVTTLNYLEHDNEAAIVLAKAKGFD----DTEGKDIINAMVRVA 252 (327)
T ss_pred CHHHHhheeeEeeCCCCCHHHHHHHHHhhccCCC----ccchHHHHHHHHHHH
Confidence 9999999985 68999999999999876543211 012345566665554
No 318
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.29 E-value=2.2e-11 Score=124.18 Aligned_cols=166 Identities=15% Similarity=0.286 Sum_probs=104.4
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHH-HHHHHHHHHHHhcCCCEEEEE
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFE-DRLKKILKEISNNQKDIIIFI 91 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~-~~l~~~~~~~~~~~~~~iL~i 91 (899)
.+.++|+||+|+|||+|.+++++++.... | +..++.++...+.. .+..... ..+.++.+.... .-+|+|
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~-~----~~~v~y~~~~~f~~--~~~~~~~~~~~~~~~~~~~~---~DlL~i 103 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQH-P----GKRVVYLSAEEFIR--EFADALRDGEIEEFKDRLRS---ADLLII 103 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHC-T----TS-EEEEEHHHHHH--HHHHHHHTTSHHHHHHHHCT---SSEEEE
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhcc-c----cccceeecHHHHHH--HHHHHHHcccchhhhhhhhc---CCEEEE
Confidence 34589999999999999999999875421 1 66788887665531 1100000 112333344432 239999
Q ss_pred ccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhccc---cccccCCCHHHHHHHHHhhh
Q psy2887 92 DELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQ---KILVEEPDIEETISILRGLQ 168 (899)
Q Consensus 92 DEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~---~i~l~~p~~~e~~~il~~~~ 168 (899)
|+++.+.... .........+....++++.+++++...+.. ...+++.|.+||. .+.+.+|+.+++.+|++...
T Consensus 104 DDi~~l~~~~--~~q~~lf~l~n~~~~~~k~li~ts~~~P~~--l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a 179 (219)
T PF00308_consen 104 DDIQFLAGKQ--RTQEELFHLFNRLIESGKQLILTSDRPPSE--LSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKA 179 (219)
T ss_dssp ETGGGGTTHH--HHHHHHHHHHHHHHHTTSEEEEEESS-TTT--TTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHH
T ss_pred ecchhhcCch--HHHHHHHHHHHHHHhhCCeEEEEeCCCCcc--ccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHH
Confidence 9999986421 112334455556667777666666555441 2247899999997 38899999999999999888
Q ss_pred hhhhcccCCCCCHHHHHHHHhhhhhhcc
Q psy2887 169 KKYEVHHGVEITDPAIVAASELSYRYIS 196 (899)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (899)
.. .++.++++++..+++...+.++
T Consensus 180 ~~----~~~~l~~~v~~~l~~~~~~~~r 203 (219)
T PF00308_consen 180 KE----RGIELPEEVIEYLARRFRRDVR 203 (219)
T ss_dssp HH----TT--S-HHHHHHHHHHTTSSHH
T ss_pred HH----hCCCCcHHHHHHHHHhhcCCHH
Confidence 76 6788999999999988776544
No 319
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.29 E-value=1.7e-11 Score=139.89 Aligned_cols=168 Identities=14% Similarity=0.241 Sum_probs=114.7
Q ss_pred eEEEEecCCCChHHHHHHHHHHHhccC--CCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEE
Q psy2887 419 GSFMFLGPTGVGKTELCKTLSACIFNN--EESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILL 496 (899)
Q Consensus 419 ~~ill~GppGtGKT~lA~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~l 496 (899)
.+++|+||||||||+|++++++.+... +..++++++.++..... ..+ .. .....+.+.++ ...+|+|
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~-~~~-~~-------~~~~~~~~~~~--~~dlLii 217 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFV-NAL-RN-------NTMEEFKEKYR--SVDVLLI 217 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH-HHH-Hc-------CcHHHHHHHHh--cCCEEEE
Confidence 469999999999999999999998654 56688888877654311 100 00 01122333344 3469999
Q ss_pred ccccccCH--HHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhh
Q psy2887 497 DEIEKANS--DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN 574 (899)
Q Consensus 497 DEid~~~~--~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 574 (899)
||++.+.. ..+..|+.+++.-. ..+..+|+|+|..+..+.. +.+.+.+
T Consensus 218 DDi~~l~~~~~~~~~l~~~~n~l~----------~~~~~iiits~~~p~~l~~--------------------l~~~l~S 267 (450)
T PRK00149 218 DDIQFLAGKERTQEEFFHTFNALH----------EAGKQIVLTSDRPPKELPG--------------------LEERLRS 267 (450)
T ss_pred ehhhhhcCCHHHHHHHHHHHHHHH----------HCCCcEEEECCCCHHHHHH--------------------HHHHHHh
Confidence 99998754 35677777766411 1223478888877664422 5677899
Q ss_pred ccC--eEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCccccccccccc
Q psy2887 575 RID--DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGC 639 (899)
Q Consensus 575 R~~--~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~ 639 (899)
||. .++.+.||+.+++.+|++..+.. .+ +.++++++++|++..- ..+|.+.|.
T Consensus 268 Rl~~gl~v~i~~pd~~~r~~il~~~~~~-------~~--~~l~~e~l~~ia~~~~---~~~R~l~~~ 322 (450)
T PRK00149 268 RFEWGLTVDIEPPDLETRIAILKKKAEE-------EG--IDLPDEVLEFIAKNIT---SNVRELEGA 322 (450)
T ss_pred HhcCCeeEEecCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHcCcC---CCHHHHHHH
Confidence 995 58999999999999998877743 23 7899999999998332 234555555
No 320
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.29 E-value=4.1e-11 Score=120.06 Aligned_cols=154 Identities=18% Similarity=0.160 Sum_probs=107.2
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCcc---------------CCCeEEEEehhhhhcCcccCchHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSL---------------LSKKILLLDIALLLAGTKYRGEFEDRLKK 75 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l---------------~~~~~~~~~~~~l~~~~~~~g~~~~~l~~ 75 (899)
+-+..+||+||+|+|||++|+.+++.+.... +... ....+..+.... . .. ..+.+++
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~-~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~----~-~~--~~~~i~~ 83 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQ-PGGGEPCGECPSCRLIEAGNHPDLHRLEPEG----Q-SI--KVDQVRE 83 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCCCcEEEecccc----C-cC--CHHHHHH
Confidence 4455699999999999999999999985421 0000 011122222111 0 11 1235666
Q ss_pred HHHHHHh---cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC--ceEEEEecChhHHHHhhhcCHHHHhccccc
Q psy2887 76 ILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG--ELHCIGATTLNEYRQYIEKDAAFERRFQKI 150 (899)
Q Consensus 76 ~~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~--~v~vI~at~~~~~~~~~~ld~al~~Rf~~i 150 (899)
+++.+.. .+...|++|||+|.+.. ++.+.|+..++.. ...+|++|+... .+.+++++|+..+
T Consensus 84 i~~~~~~~~~~~~~kviiide~~~l~~--------~~~~~Ll~~le~~~~~~~~il~~~~~~-----~l~~~i~sr~~~~ 150 (188)
T TIGR00678 84 LVEFLSRTPQESGRRVVIIEDAERMNE--------AAANALLKTLEEPPPNTLFILITPSPE-----KLLPTIRSRCQVL 150 (188)
T ss_pred HHHHHccCcccCCeEEEEEechhhhCH--------HHHHHHHHHhcCCCCCeEEEEEECChH-----hChHHHHhhcEEe
Confidence 6666653 24467999999999964 4567888888753 467777777664 7889999999999
Q ss_pred cccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhc
Q psy2887 151 LVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYI 195 (899)
Q Consensus 151 ~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (899)
.|++|+.++..++++.. + ++++++..++..+++..
T Consensus 151 ~~~~~~~~~~~~~l~~~--------g--i~~~~~~~i~~~~~g~~ 185 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ--------G--ISEEAAELLLALAGGSP 185 (188)
T ss_pred eCCCCCHHHHHHHHHHc--------C--CCHHHHHHHHHHcCCCc
Confidence 99999999999888764 2 67888998888887644
No 321
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.28 E-value=5.4e-11 Score=132.46 Aligned_cols=173 Identities=23% Similarity=0.278 Sum_probs=121.8
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCc--------------cCCCeEEEEehhhhhcCcccCchHHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNS--------------LLSKKILLLDIALLLAGTKYRGEFEDRLKKI 76 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~--------------l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~ 76 (899)
+.+..+||+||||+|||++|+++|+.+.....+.. .....++.++.. . ......++++
T Consensus 34 ~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~------~--~~~~~~~~~l 105 (355)
T TIGR02397 34 RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAA------S--NNGVDDIREI 105 (355)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeecc------c--cCCHHHHHHH
Confidence 33445799999999999999999999854321100 011233333321 1 1112246667
Q ss_pred HHHHHhc---CCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhcccccc
Q psy2887 77 LKEISNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKIL 151 (899)
Q Consensus 77 ~~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~ 151 (899)
++.+... +...|++|||++.+.. ...+.|+..++. ..+++|++|+... .+.+++++|+..+.
T Consensus 106 ~~~~~~~p~~~~~~vviidea~~l~~--------~~~~~Ll~~le~~~~~~~lIl~~~~~~-----~l~~~l~sr~~~~~ 172 (355)
T TIGR02397 106 LDNVKYAPSSGKYKVYIIDEVHMLSK--------SAFNALLKTLEEPPEHVVFILATTEPH-----KIPATILSRCQRFD 172 (355)
T ss_pred HHHHhcCcccCCceEEEEeChhhcCH--------HHHHHHHHHHhCCccceeEEEEeCCHH-----HHHHHHHhheeEEE
Confidence 7765422 3346999999998853 456778888864 4677778877766 67789999999899
Q ss_pred ccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 152 VEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 152 l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
|++|+.++...+++..+++ .++.++++++..++..+++.. ..+.+.++.+...
T Consensus 173 ~~~~~~~~l~~~l~~~~~~----~g~~i~~~a~~~l~~~~~g~~------~~a~~~lekl~~~ 225 (355)
T TIGR02397 173 FKRIPLEDIVERLKKILDK----EGIKIEDEALELIARAADGSL------RDALSLLDQLISF 225 (355)
T ss_pred cCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCh------HHHHHHHHHHHhh
Confidence 9999999999999988875 567899999999999886644 3777777766654
No 322
>KOG0991|consensus
Probab=99.28 E-value=2.2e-11 Score=117.49 Aligned_cols=170 Identities=18% Similarity=0.244 Sum_probs=119.7
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCch--HHHHHHHHHHHHH-hc--CC
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGE--FEDRLKKILKEIS-NN--QK 85 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~--~~~~l~~~~~~~~-~~--~~ 85 (899)
..-+|++|.|||||||||-+.++|+++.-..+ .-.+.+++.+ ..+|- ...+++ .|.+-+ .. +.
T Consensus 46 gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~-----ke~vLELNAS------deRGIDvVRn~IK-~FAQ~kv~lp~gr 113 (333)
T KOG0991|consen 46 GNMPNLIISGPPGTGKTTSILCLARELLGDSY-----KEAVLELNAS------DERGIDVVRNKIK-MFAQKKVTLPPGR 113 (333)
T ss_pred CCCCceEeeCCCCCchhhHHHHHHHHHhChhh-----hhHhhhccCc------cccccHHHHHHHH-HHHHhhccCCCCc
Confidence 44569999999999999999999999843211 1223444432 23332 122222 222221 11 23
Q ss_pred CEEEEEccccccccCCCCCchhhHHHhhhhhhc--CCceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHHHHHHH
Q psy2887 86 DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS--RGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISI 163 (899)
Q Consensus 86 ~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~--~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~i 163 (899)
..|+++||+|++.. .++.+|...|| ++...+..++|..+ .+-+.+.+||..+.+...++.+...-
T Consensus 114 hKIiILDEADSMT~--------gAQQAlRRtMEiyS~ttRFalaCN~s~-----KIiEPIQSRCAiLRysklsd~qiL~R 180 (333)
T KOG0991|consen 114 HKIIILDEADSMTA--------GAQQALRRTMEIYSNTTRFALACNQSE-----KIIEPIQSRCAILRYSKLSDQQILKR 180 (333)
T ss_pred eeEEEeeccchhhh--------HHHHHHHHHHHHHcccchhhhhhcchh-----hhhhhHHhhhHhhhhcccCHHHHHHH
Confidence 45999999999964 45567888776 56788999999888 78889999999999999999887776
Q ss_pred HHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhh
Q psy2887 164 LRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 215 (899)
Q Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~ 215 (899)
|..+.+. .++.++++.+++++..+++.+. .+++.+....+..
T Consensus 181 l~~v~k~----Ekv~yt~dgLeaiifta~GDMR------QalNnLQst~~g~ 222 (333)
T KOG0991|consen 181 LLEVAKA----EKVNYTDDGLEAIIFTAQGDMR------QALNNLQSTVNGF 222 (333)
T ss_pred HHHHHHH----hCCCCCcchHHHhhhhccchHH------HHHHHHHHHhccc
Confidence 6666654 6899999999999999988766 5666665554443
No 323
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=2.6e-11 Score=129.36 Aligned_cols=162 Identities=14% Similarity=0.226 Sum_probs=111.4
Q ss_pred CChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCc--eEEecccc---ccc-ccchh
Q psy2887 391 VGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES--IIRIDMSE---FIE-KHSIS 464 (899)
Q Consensus 391 ~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~--~~~~~~~~---~~~-~~~~~ 464 (899)
-++....+.+.+++...+. .+.+||+||+|+||+++|+++|+.+...... -.+-.|.. +.. .|..-
T Consensus 5 PW~~~~~~~l~~~~~~~rl--------~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~ 76 (325)
T PRK06871 5 PWLQPTYQQITQAFQQGLG--------HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDF 76 (325)
T ss_pred cchHHHHHHHHHHHHcCCc--------ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 4677777888888876442 2369999999999999999999999543211 01111111 110 11111
Q ss_pred hccCC-CCCcccccccchhhHHHHhC----CCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecC
Q psy2887 465 RLIGA-PPGYIGYEEGGYLTEIVRRK----PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSN 539 (899)
Q Consensus 465 ~l~g~-~~~~~g~~~~~~l~~~~~~~----~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn 539 (899)
..+.. ....+|.++.+.+.+.+... +..|++||++|+|....+|+||+.||+ +..+++||++|+
T Consensus 77 ~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEE-----------Pp~~~~fiL~t~ 145 (325)
T PRK06871 77 HILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEE-----------PRPNTYFLLQAD 145 (325)
T ss_pred EEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcC-----------CCCCeEEEEEEC
Confidence 11111 11134444445555555433 457999999999999999999999999 678899999998
Q ss_pred CChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHH
Q psy2887 540 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANI 596 (899)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~ 596 (899)
.... +.|.++||| ..+.|.|++.+++.+.+..
T Consensus 146 ~~~~------------------------llpTI~SRC-~~~~~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 146 LSAA------------------------LLPTIYSRC-QTWLIHPPEEQQALDWLQA 177 (325)
T ss_pred ChHh------------------------CchHHHhhc-eEEeCCCCCHHHHHHHHHH
Confidence 6443 556689999 8999999999998877654
No 324
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.27 E-value=1.5e-10 Score=130.80 Aligned_cols=214 Identities=18% Similarity=0.197 Sum_probs=135.2
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccC--CCceEEecccccccccch--
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN--EESIIRIDMSEFIEKHSI-- 463 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~--~~~~~~~~~~~~~~~~~~-- 463 (899)
..++|.+..++.|...+.....+ ..+ .+++++||||||||++++.+++.+... +..++.++|....+....
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~----~~~-~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRG----SRP-LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCC----CCC-CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHH
Confidence 66889999999999988765432 122 268999999999999999999988433 367888998776543211
Q ss_pred ---hhccCCCCCccccccc---chhhHHHHh-CCCEEEEEccccccC----HHHHHHHHHhhcCCceecCCCceEecCCe
Q psy2887 464 ---SRLIGAPPGYIGYEEG---GYLTEIVRR-KPYSLILLDEIEKAN----SDVFNILLQILDDGRLTDNRGRTINFRNT 532 (899)
Q Consensus 464 ---~~l~g~~~~~~g~~~~---~~l~~~~~~-~~~~vl~lDEid~~~----~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ 532 (899)
..+.+......|.... ..+.+.+.. ..+.||+|||+|.+. ...+..|+..++.. ...++
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~----------~~~~v 174 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY----------PGARI 174 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc----------CCCeE
Confidence 1222211112222111 223333333 234699999999886 44566666655531 11356
Q ss_pred EEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccC-eEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcc
Q psy2887 533 IIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRID-DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 611 (899)
Q Consensus 533 ~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~-~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~ 611 (899)
.+|+++|...- ...+.+.+.+|+. ..+.|+|++.+++.+|+...+.. .+ ..
T Consensus 175 ~vI~i~~~~~~---------------------~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~---~~----~~ 226 (394)
T PRK00411 175 GVIGISSDLTF---------------------LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEE---GF----YP 226 (394)
T ss_pred EEEEEECCcch---------------------hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHh---hc----cc
Confidence 68888874321 1235666777773 58899999999999998877632 11 12
Q ss_pred eeecHHHHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 612 LKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 612 ~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
-.+++++++.+++.... ..||++..++.+..+.
T Consensus 227 ~~~~~~~l~~i~~~~~~---~~Gd~r~a~~ll~~a~ 259 (394)
T PRK00411 227 GVVDDEVLDLIADLTAR---EHGDARVAIDLLRRAG 259 (394)
T ss_pred CCCCHhHHHHHHHHHHH---hcCcHHHHHHHHHHHH
Confidence 35789999999873321 1466666655565544
No 325
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.27 E-value=1.4e-10 Score=129.63 Aligned_cols=193 Identities=21% Similarity=0.287 Sum_probs=123.6
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhc---------------Ccc--cCc-hHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA---------------GTK--YRG-EFEDR 72 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~---------------~~~--~~g-~~~~~ 72 (899)
..+++++|+||||||||++++.+++.+......... ...++.+++..... +.. ..| ...+.
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~-~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 116 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDV-RVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEV 116 (365)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCC-ceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHH
Confidence 455789999999999999999999887431100000 14566666543211 110 111 12334
Q ss_pred HHHHHHHHHhcCCCEEEEEccccccccCCCCCchhhHHHhhhhh-----hcCCceEEEEecChhHHHHhhhcCHHHHhcc
Q psy2887 73 LKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPE-----LSRGELHCIGATTLNEYRQYIEKDAAFERRF 147 (899)
Q Consensus 73 l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~-----l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf 147 (899)
+..++..+.....+.||+|||+|.|.... .+....|... +...++.+|+++|...+.. .+++.+.+||
T Consensus 117 ~~~l~~~l~~~~~~~vlvIDE~d~L~~~~-----~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~--~l~~~~~s~~ 189 (365)
T TIGR02928 117 FRRLYKELNERGDSLIIVLDEIDYLVGDD-----DDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRE--NLDPRVKSSL 189 (365)
T ss_pred HHHHHHHHHhcCCeEEEEECchhhhccCC-----cHHHHhHhccccccCCCCCeEEEEEEECCcchHh--hcCHHHhccC
Confidence 45555555444567899999999997321 2333333333 1235788999998876432 5789999999
Q ss_pred c--cccccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhh
Q psy2887 148 Q--KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIK 216 (899)
Q Consensus 148 ~--~i~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~ 216 (899)
. .+.|++++.++..+|++..++.. .....++++++..++..+.+.. +.+..+++++..|+..+.
T Consensus 190 ~~~~i~f~p~~~~e~~~il~~r~~~~--~~~~~~~~~~l~~i~~~~~~~~---Gd~R~al~~l~~a~~~a~ 255 (365)
T TIGR02928 190 CEEEIIFPPYDAEELRDILENRAEKA--FYDGVLDDGVIPLCAALAAQEH---GDARKAIDLLRVAGEIAE 255 (365)
T ss_pred CcceeeeCCCCHHHHHHHHHHHHHhh--ccCCCCChhHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHH
Confidence 5 48999999999999998776521 1223478888888777665322 234578888888775543
No 326
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.27 E-value=2.9e-11 Score=143.25 Aligned_cols=187 Identities=18% Similarity=0.251 Sum_probs=125.7
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhcc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 467 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (899)
..++|.+..++.+.+.+.+.. ..++||+||||||||++|+.+|..+...+.|+...++.-+.. .....+.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~---------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-~~~~lla 255 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR---------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-DIGSLLA 255 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC---------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-cHHHHhc
Confidence 468999999999998887632 126899999999999999999988754444444333333221 1111122
Q ss_pred CCCCCccccccc--chhhHHHHhCCCEEEEEccccccC---------HHHHHHHHHhhcCCceecCCCceEecCCeEEEE
Q psy2887 468 GAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN---------SDVFNILLQILDDGRLTDNRGRTINFRNTIIVM 536 (899)
Q Consensus 468 g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~---------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ 536 (899)
|. .|.|..+. +.++..++...++|||||||+.+. .++.+.|..++..| +..+|.
T Consensus 256 G~--~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-------------~i~vIg 320 (758)
T PRK11034 256 GT--KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-------------KIRVIG 320 (758)
T ss_pred cc--chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-------------CeEEEe
Confidence 22 24554443 345555666777899999999762 34567777787763 456888
Q ss_pred ecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecH
Q psy2887 537 TSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISK 616 (899)
Q Consensus 537 tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 616 (899)
+||... +.. .-..+|.|.+|| ..|.+++|+.++..+|++....++... ..+.+++
T Consensus 321 ATt~~E--~~~-----------------~~~~D~AL~rRF-q~I~v~ePs~~~~~~IL~~~~~~ye~~-----h~v~i~~ 375 (758)
T PRK11034 321 STTYQE--FSN-----------------IFEKDRALARRF-QKIDITEPSIEETVQIINGLKPKYEAH-----HDVRYTA 375 (758)
T ss_pred cCChHH--HHH-----------------HhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHhhhc-----cCCCcCH
Confidence 888531 111 002478899999 589999999999999988766554332 2377888
Q ss_pred HHHHHHHh
Q psy2887 617 AALKKISN 624 (899)
Q Consensus 617 ~~~~~L~~ 624 (899)
+++...+.
T Consensus 376 ~al~~a~~ 383 (758)
T PRK11034 376 KAVRAAVE 383 (758)
T ss_pred HHHHHHHH
Confidence 88877665
No 327
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.26 E-value=8.6e-11 Score=125.13 Aligned_cols=209 Identities=21% Similarity=0.230 Sum_probs=127.7
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhcc----CCCceEEecc----ccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFN----NEESIIRIDM----SEFIE 459 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~----~~~~~~~~~~----~~~~~ 459 (899)
.+++|+++++..+...++....+...+++ .++|+|||||||||+|++|++.+-. ..++++.+.. +.+.+
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~---il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e 127 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQ---ILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHE 127 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCc---EEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCcc
Confidence 47999999999999999887766543322 5899999999999999999999821 2346666655 22211
Q ss_pred c------------------------------cchhhc----cCCC----------------------CC---------cc
Q psy2887 460 K------------------------------HSISRL----IGAP----------------------PG---------YI 474 (899)
Q Consensus 460 ~------------------------------~~~~~l----~g~~----------------------~~---------~~ 474 (899)
. .....+ -|.. |+ .+
T Consensus 128 ~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~qdi~~L~ 207 (361)
T smart00763 128 DPLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENNQDISELT 207 (361)
T ss_pred CCcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCcccHHHHh
Confidence 0 000000 0000 00 00
Q ss_pred c-----------ccccch--hhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCC-CceEecCCeEEEEecCC
Q psy2887 475 G-----------YEEGGY--LTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNR-GRTINFRNTIIVMTSNL 540 (899)
Q Consensus 475 g-----------~~~~~~--l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~-g~~~~~~~~~iI~tsn~ 540 (899)
| .+..+. ..+.+..+..||+-|+|+.+++..+++.||.++++|.+.... ...++ -+.+||++||.
T Consensus 208 G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~-~d~liia~sNe 286 (361)
T smart00763 208 GKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIP-IDGLIIAHSNE 286 (361)
T ss_pred cccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccc-cceEEEEeCCH
Confidence 0 000000 012233445689999999999999999999999999987543 33444 45588999994
Q ss_pred ChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCH-HHHHHHHHHHHHHHHHHHHhcCcceeecHHHH
Q psy2887 541 GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNR-KNILSIANIQLNILKNKLLKMNMDLKISKAAL 619 (899)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~-~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~ 619 (899)
.. +.. ........+|++|| ..+.++.+.. ++=.+|.++.+.. .......+.+-++
T Consensus 287 ~e--~~~---------------~~~~k~~eaf~dR~-~~i~vpY~l~~~~E~~Iy~k~~~~------s~~~~~~~aP~~l 342 (361)
T smart00763 287 SE--WQR---------------FKSNKKNEALLDRI-IKVKVPYCLRVSEEAQIYEKLLRN------SDLTEAHIAPHTL 342 (361)
T ss_pred HH--Hhh---------------hhccccchhhhhce-EEEeCCCcCCHHHHHHHHHHHhcc------CcCcccccCchHH
Confidence 21 111 11123467899999 4777766554 5556676665532 1112355666666
Q ss_pred HHHHh
Q psy2887 620 KKISN 624 (899)
Q Consensus 620 ~~L~~ 624 (899)
+.++.
T Consensus 343 e~aa~ 347 (361)
T smart00763 343 EMAAL 347 (361)
T ss_pred HHHHH
Confidence 66554
No 328
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.26 E-value=7.8e-11 Score=137.32 Aligned_cols=140 Identities=17% Similarity=0.170 Sum_probs=89.8
Q ss_pred HHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCc------e----EecCCeEEEEecCCChhhhhhhhcCcH
Q psy2887 484 EIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGR------T----INFRNTIIVMTSNLGSDKIKEMEKGDK 553 (899)
Q Consensus 484 ~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~------~----~~~~~~~iI~tsn~~~~~~~~~~~~~~ 553 (899)
..+.++.+++|||||++.+++..|..|+++|+++++....+. . .-..++.+|+++|..
T Consensus 211 G~L~~AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~------------ 278 (608)
T TIGR00764 211 GAIHRAHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLD------------ 278 (608)
T ss_pred CceEECCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHH------------
Confidence 344566679999999999999999999999999987753321 1 112467889999842
Q ss_pred HHHHHHHHHHHhhcCChhHhhccC---eEEEecCC---CHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhccc
Q psy2887 554 EIIKLAVMNEVKIYFRPEFINRID---DIIVFRYL---NRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGF 627 (899)
Q Consensus 554 ~~~~~~~~~~l~~~~~~~l~~R~~---~~i~f~~l---~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 627 (899)
....++|+|++||+ ..+.|.+. +.+...++++ .+.+.++..+....++++++..|.+. +
T Consensus 279 ----------~l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~----~i~~~~~r~G~l~~~s~~Av~~Li~~-~ 343 (608)
T TIGR00764 279 ----------DLEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQ----FVAQEVKKDGRIPHFTRDAVEEIVRE-A 343 (608)
T ss_pred ----------HHhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHH----HHHHHHHHhCCCCcCCHHHHHHHHHH-H
Confidence 12348999999998 66666543 4555555433 23334444544458999999999863 2
Q ss_pred Cccccccc-ccccHHHHHHHHHHh
Q psy2887 628 DLIYGARD-VHGCKKSLSILLKKI 650 (899)
Q Consensus 628 ~~~~~~~d-i~~~~~~l~~~l~~~ 650 (899)
.+.-+.++ +-.....|..++..+
T Consensus 344 ~R~ag~r~~lsl~~R~L~~llR~A 367 (608)
T TIGR00764 344 QRRAGRKDHLTLRLRELGGLVRAA 367 (608)
T ss_pred HHHHhcccccCCCHHHHHHHHHHH
Confidence 22222222 222344466666554
No 329
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.26 E-value=3.1e-10 Score=128.20 Aligned_cols=190 Identities=17% Similarity=0.229 Sum_probs=123.8
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhc-------------C--cccCc-hHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA-------------G--TKYRG-EFEDRLK 74 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~-------------~--~~~~g-~~~~~l~ 74 (899)
..+.+++|+||||||||++++.+++.+.... .+..++.+++..... + ....| .....+.
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-----~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 127 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-----VKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFD 127 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-----CCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHH
Confidence 3456899999999999999999999875432 145566676542210 1 00112 2333444
Q ss_pred HHHHHHHhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhc---CCceEEEEecChhHHHHhhhcCHHHHhccc--c
Q psy2887 75 KILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS---RGELHCIGATTLNEYRQYIEKDAAFERRFQ--K 149 (899)
Q Consensus 75 ~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~---~~~v~vI~at~~~~~~~~~~ld~al~~Rf~--~ 149 (899)
.+.+.+...+.+.||+|||+|.+.... ..+....|...++ ..++.+|+++|...... .+++.+.+||. .
T Consensus 128 ~~~~~l~~~~~~~viviDE~d~l~~~~----~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~--~l~~~~~s~~~~~~ 201 (394)
T PRK00411 128 KIAEYLDERDRVLIVALDDINYLFEKE----GNDVLYSLLRAHEEYPGARIGVIGISSDLTFLY--ILDPRVKSVFRPEE 201 (394)
T ss_pred HHHHHHHhcCCEEEEEECCHhHhhccC----CchHHHHHHHhhhccCCCeEEEEEEECCcchhh--hcCHHHHhcCCcce
Confidence 444444444567899999999997211 1233333433332 33688899888766433 36888999885 4
Q ss_pred ccccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhh
Q psy2887 150 ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIK 216 (899)
Q Consensus 150 i~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~ 216 (899)
|.|++++.++..+|++..++. ......+++++++.+++.+.+..+ -...+++++..|+..+.
T Consensus 202 i~f~py~~~e~~~il~~r~~~--~~~~~~~~~~~l~~i~~~~~~~~G---d~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 202 IYFPPYTADEIFDILKDRVEE--GFYPGVVDDEVLDLIADLTAREHG---DARVAIDLLRRAGLIAE 263 (394)
T ss_pred eecCCCCHHHHHHHHHHHHHh--hcccCCCCHhHHHHHHHHHHHhcC---cHHHHHHHHHHHHHHHH
Confidence 899999999999999876643 112345889999999988855322 23477788877765443
No 330
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.26 E-value=5e-11 Score=135.42 Aligned_cols=167 Identities=16% Similarity=0.221 Sum_probs=116.1
Q ss_pred EEEEecCCCChHHHHHHHHHHHhcc--CCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFN--NEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLD 497 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~--~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lD 497 (899)
+++|+|++|||||+|+++|++.+.. .+..++++++.++....... +. ......+.+.++ ...+|+||
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~a-l~--------~~~~~~f~~~y~--~~DLLlID 384 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINS-IR--------DGKGDSFRRRYR--EMDILLVD 384 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHH-HH--------hccHHHHHHHhh--cCCEEEEe
Confidence 5999999999999999999999853 36778888888776432111 00 000112333333 24699999
Q ss_pred cccccCH--HHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhc
Q psy2887 498 EIEKANS--DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINR 575 (899)
Q Consensus 498 Eid~~~~--~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R 575 (899)
||+.+.. ..+..|+.+++.-. ..+..+|+|||..+..+. .+.+.|.+|
T Consensus 385 DIq~l~gke~tqeeLF~l~N~l~----------e~gk~IIITSd~~P~eL~--------------------~l~~rL~SR 434 (617)
T PRK14086 385 DIQFLEDKESTQEEFFHTFNTLH----------NANKQIVLSSDRPPKQLV--------------------TLEDRLRNR 434 (617)
T ss_pred hhccccCCHHHHHHHHHHHHHHH----------hcCCCEEEecCCChHhhh--------------------hccHHHHhh
Confidence 9998754 35677777777511 123457889998776543 367789999
Q ss_pred cC--eEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCccccccccccc
Q psy2887 576 ID--DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGC 639 (899)
Q Consensus 576 ~~--~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~ 639 (899)
|. .++.+.+++.+.+.+|++..+. ..+ +.++++++++|+.... -.++.|.+.
T Consensus 435 f~~GLvv~I~~PD~EtR~aIL~kka~-------~r~--l~l~~eVi~yLa~r~~---rnvR~Lega 488 (617)
T PRK14086 435 FEWGLITDVQPPELETRIAILRKKAV-------QEQ--LNAPPEVLEFIASRIS---RNIRELEGA 488 (617)
T ss_pred hhcCceEEcCCCCHHHHHHHHHHHHH-------hcC--CCCCHHHHHHHHHhcc---CCHHHHHHH
Confidence 94 5899999999999999887663 234 7889999999998322 235666665
No 331
>PRK09087 hypothetical protein; Validated
Probab=99.26 E-value=1.2e-10 Score=119.11 Aligned_cols=141 Identities=12% Similarity=0.078 Sum_probs=102.3
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEEccc
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDEL 94 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi 94 (899)
.++|+||+|+|||||+++++... +.. .++...+ ....+..+. ..+|+|||+
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~----------~~~--~i~~~~~-------------~~~~~~~~~----~~~l~iDDi 96 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKS----------DAL--LIHPNEI-------------GSDAANAAA----EGPVLIEDI 96 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhc----------CCE--EecHHHc-------------chHHHHhhh----cCeEEEECC
Confidence 48999999999999999998754 333 2332211 112222222 127999999
Q ss_pred cccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhh-cCHHHHhccc---cccccCCCHHHHHHHHHhhhhh
Q psy2887 95 HTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIE-KDAAFERRFQ---KILVEEPDIEETISILRGLQKK 170 (899)
Q Consensus 95 ~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~-ld~al~~Rf~---~i~l~~p~~~e~~~il~~~~~~ 170 (899)
+.+.. ........+....+.+..++|++++.+.+ +. ..+.|++||. .+.+.+|+.+++.++++...+.
T Consensus 97 ~~~~~-----~~~~lf~l~n~~~~~g~~ilits~~~p~~---~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~ 168 (226)
T PRK09087 97 DAGGF-----DETGLFHLINSVRQAGTSLLMTSRLWPSS---WNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFAD 168 (226)
T ss_pred CCCCC-----CHHHHHHHHHHHHhCCCeEEEECCCChHH---hccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHH
Confidence 98732 12345666666677788888877776652 23 3689999994 5999999999999999988876
Q ss_pred hhcccCCCCCHHHHHHHHhhhhhhcc
Q psy2887 171 YEVHHGVEITDPAIVAASELSYRYIS 196 (899)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (899)
.++.++++++.++++.+.+.+.
T Consensus 169 ----~~~~l~~ev~~~La~~~~r~~~ 190 (226)
T PRK09087 169 ----RQLYVDPHVVYYLVSRMERSLF 190 (226)
T ss_pred ----cCCCCCHHHHHHHHHHhhhhHH
Confidence 5788999999999999887654
No 332
>PRK04132 replication factor C small subunit; Provisional
Probab=99.25 E-value=5.4e-11 Score=140.63 Aligned_cols=162 Identities=19% Similarity=0.257 Sum_probs=123.6
Q ss_pred EEEEec--CCCChHHHHHHHHHHHhccC--CCceEEecccccccccchhhccCCCCCcccccccchhhHHHHh-----CC
Q psy2887 420 SFMFLG--PTGVGKTELCKTLSACIFNN--EESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRR-----KP 490 (899)
Q Consensus 420 ~ill~G--ppGtGKT~lA~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~-----~~ 490 (899)
+-+..| |++.||||+|++||+.+++. +.+++.+|.++....+.+..++ ...... .+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iI---------------k~~a~~~~~~~~~ 630 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKV---------------KEFARTKPIGGAS 630 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHH---------------HHHHhcCCcCCCC
Confidence 456678 99999999999999999875 4578999998854433332221 111111 13
Q ss_pred CEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCCh
Q psy2887 491 YSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRP 570 (899)
Q Consensus 491 ~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 570 (899)
+.|+||||+|+++...|+.|++.||+ +..++.||++||.... +.+
T Consensus 631 ~KVvIIDEaD~Lt~~AQnALLk~lEe-----------p~~~~~FILi~N~~~k------------------------Ii~ 675 (846)
T PRK04132 631 FKIIFLDEADALTQDAQQALRRTMEM-----------FSSNVRFILSCNYSSK------------------------IIE 675 (846)
T ss_pred CEEEEEECcccCCHHHHHHHHHHhhC-----------CCCCeEEEEEeCChhh------------------------Cch
Confidence 47999999999999999999999997 4578899999996443 456
Q ss_pred hHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 571 EFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 571 ~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
.+.||| .++.|.|++.+++.+.+...+. .++ +.++++++..++. .+-||++.+...|+.+.
T Consensus 676 tIrSRC-~~i~F~~ls~~~i~~~L~~I~~-------~Eg--i~i~~e~L~~Ia~------~s~GDlR~AIn~Lq~~~ 736 (846)
T PRK04132 676 PIQSRC-AIFRFRPLRDEDIAKRLRYIAE-------NEG--LELTEEGLQAILY------IAEGDMRRAINILQAAA 736 (846)
T ss_pred HHhhhc-eEEeCCCCCHHHHHHHHHHHHH-------hcC--CCCCHHHHHHHHH------HcCCCHHHHHHHHHHHH
Confidence 699999 8999999999999988766553 234 6688999999998 45688888866666544
No 333
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.2e-11 Score=133.33 Aligned_cols=179 Identities=21% Similarity=0.260 Sum_probs=115.5
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCC-------ceEEecc------
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE-------SIIRIDM------ 454 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~-------~~~~~~~------ 454 (899)
.+|+||+.+++.+.-+..-.+ ++||+||||||||++|+.+...|..-.. .+..++.
T Consensus 179 ~DV~GQ~~AKrAleiAAAGgH-----------nLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~ 247 (490)
T COG0606 179 KDVKGQEQAKRALEIAAAGGH-----------NLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGC 247 (490)
T ss_pred hhhcCcHHHHHHHHHHHhcCC-----------cEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccC
Confidence 689999999999988765433 7999999999999999999877721100 0000110
Q ss_pred -----ccccccc---chhhccCCCCCcccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCC--C
Q psy2887 455 -----SEFIEKH---SISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNR--G 524 (899)
Q Consensus 455 -----~~~~~~~---~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~--g 524 (899)
..|...| +...++|.- +......+..+.++||||||+-.....+++.|.+-||+|.+.... .
T Consensus 248 ~~~~~rPFr~PHHsaS~~aLvGGG--------~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~ 319 (490)
T COG0606 248 PLKIHRPFRAPHHSASLAALVGGG--------GVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGS 319 (490)
T ss_pred ccceeCCccCCCccchHHHHhCCC--------CCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCC
Confidence 1111111 111222211 111223334566789999999999999999999999999877543 4
Q ss_pred ceEecCCeEEEEecCCChhhhhhhhc----CcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHH
Q psy2887 525 RTINFRNTIIVMTSNLGSDKIKEMEK----GDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNI 590 (899)
Q Consensus 525 ~~~~~~~~~iI~tsn~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~ 590 (899)
......+..+|+++|.-+........ -......++ .++++..|++|||..+..+.++..++
T Consensus 320 ~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y-----~~klSgp~lDRiDl~vev~~~~~~e~ 384 (490)
T COG0606 320 KVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRY-----LNKLSGPFLDRIDLMVEVPRLSAGEL 384 (490)
T ss_pred eeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHH-----HHHhhHHHHhhhhheecccCCCHHHh
Confidence 44555777889999975443222111 123333333 44577789999999999999885443
No 334
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.25 E-value=9.4e-11 Score=128.53 Aligned_cols=165 Identities=25% Similarity=0.331 Sum_probs=113.4
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHh----c-CCCE
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN----N-QKDI 87 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~----~-~~~~ 87 (899)
.++++|+||||||||++++++++.+..... ...++.++.+.. .+ . ..++..+..... . ..+.
T Consensus 38 ~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~-----~~~~i~~~~~~~------~~-~-~~~~~~i~~~~~~~~~~~~~~~ 104 (319)
T PRK00440 38 MPHLLFAGPPGTGKTTAALALARELYGEDW-----RENFLELNASDE------RG-I-DVIRNKIKEFARTAPVGGAPFK 104 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHcCCcc-----ccceEEeccccc------cc-h-HHHHHHHHHHHhcCCCCCCCce
Confidence 347999999999999999999998843211 122333332211 11 0 112222222221 1 2356
Q ss_pred EEEEccccccccCCCCCchhhHHHhhhhhhc--CCceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHHHHHHHHH
Q psy2887 88 IIFIDELHTMIGTGKVEGSIDAGNMLKPELS--RGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILR 165 (899)
Q Consensus 88 iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~--~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~il~ 165 (899)
+++|||++.+.. +..+.|...++ .....+|.+++... .+.+++.+|+..+.|++|+.++...+++
T Consensus 105 vviiDe~~~l~~--------~~~~~L~~~le~~~~~~~lIl~~~~~~-----~l~~~l~sr~~~~~~~~l~~~ei~~~l~ 171 (319)
T PRK00440 105 IIFLDEADNLTS--------DAQQALRRTMEMYSQNTRFILSCNYSS-----KIIDPIQSRCAVFRFSPLKKEAVAERLR 171 (319)
T ss_pred EEEEeCcccCCH--------HHHHHHHHHHhcCCCCCeEEEEeCCcc-----ccchhHHHHhheeeeCCCCHHHHHHHHH
Confidence 999999999854 23456666665 34466777777665 6678899999999999999999999999
Q ss_pred hhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHH
Q psy2887 166 GLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAA 213 (899)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~ 213 (899)
..+.+ .++.++++++..+++.+.+.+. .++..++.++.
T Consensus 172 ~~~~~----~~~~i~~~al~~l~~~~~gd~r------~~~~~l~~~~~ 209 (319)
T PRK00440 172 YIAEN----EGIEITDDALEAIYYVSEGDMR------KAINALQAAAA 209 (319)
T ss_pred HHHHH----cCCCCCHHHHHHHHHHcCCCHH------HHHHHHHHHHH
Confidence 88775 5788999999999999877654 77777776554
No 335
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.25 E-value=3.5e-11 Score=135.66 Aligned_cols=168 Identities=18% Similarity=0.275 Sum_probs=111.8
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccC--CCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNN--EESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLD 497 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lD 497 (899)
+++||||||||||+|++++++.+... +..++++++.++......+ + . ......+....+ ....+|+||
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~-~-~-------~~~~~~f~~~~~-~~~dvLlID 201 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDS-M-K-------EGKLNEFREKYR-KKVDVLLID 201 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHH-H-h-------cccHHHHHHHHH-hcCCEEEEe
Confidence 69999999999999999999988442 4577888877664431111 0 0 001112222222 245799999
Q ss_pred cccccC--HHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhc
Q psy2887 498 EIEKAN--SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINR 575 (899)
Q Consensus 498 Eid~~~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R 575 (899)
|++.+. ...+..|+.+++.-. ..+..+|+||+..+..+.. +.+.+.+|
T Consensus 202 Di~~l~~~~~~q~elf~~~n~l~----------~~~k~iIitsd~~p~~l~~--------------------l~~rL~SR 251 (440)
T PRK14088 202 DVQFLIGKTGVQTELFHTFNELH----------DSGKQIVICSDREPQKLSE--------------------FQDRLVSR 251 (440)
T ss_pred chhhhcCcHHHHHHHHHHHHHHH----------HcCCeEEEECCCCHHHHHH--------------------HHHHHhhH
Confidence 999774 335666776665411 1234578888876664433 45668899
Q ss_pred cC--eEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCccccccccccc
Q psy2887 576 ID--DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGC 639 (899)
Q Consensus 576 ~~--~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~ 639 (899)
|. .++.+.||+.+++..|++..+.. .+ +.++++++++|++..- ..+|.+.|.
T Consensus 252 ~~~gl~v~i~~pd~e~r~~IL~~~~~~-------~~--~~l~~ev~~~Ia~~~~---~~~R~L~g~ 305 (440)
T PRK14088 252 FQMGLVAKLEPPDEETRKKIARKMLEI-------EH--GELPEEVLNFVAENVD---DNLRRLRGA 305 (440)
T ss_pred HhcCceEeeCCCCHHHHHHHHHHHHHh-------cC--CCCCHHHHHHHHhccc---cCHHHHHHH
Confidence 93 48999999999999998876632 33 6789999999998332 345666666
No 336
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.24 E-value=5.3e-11 Score=130.91 Aligned_cols=144 Identities=26% Similarity=0.391 Sum_probs=98.9
Q ss_pred cCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCC---------------------C
Q psy2887 389 RVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNE---------------------E 447 (899)
Q Consensus 389 ~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~---------------------~ 447 (899)
.+++++.++..+...+.... +.| ..+||+||||||||++|.++|+.+++.. .
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~------~~~-halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG------RLP-HALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHP 74 (325)
T ss_pred CcccchhHHHHHHHHHHhcC------CCC-ceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCC
Confidence 45677777777777766433 112 1499999999999999999999996544 2
Q ss_pred ceEEecccccccccchhhccCCCCCcccccccchhhHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCC
Q psy2887 448 SIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNR 523 (899)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~ 523 (899)
.++.++.++....+ +..+..+.+...... .+..|++|||+|.++++.+|.|+..+|+
T Consensus 75 d~lel~~s~~~~~~------------i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEe------- 135 (325)
T COG0470 75 DFLELNPSDLRKID------------IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEE------- 135 (325)
T ss_pred ceEEecccccCCCc------------chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhcc-------
Confidence 33333333322110 111111222222222 3467999999999999999999999998
Q ss_pred CceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCH
Q psy2887 524 GRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNR 587 (899)
Q Consensus 524 g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~ 587 (899)
+..++.||++||.... +.|.+.+|| .++.|.|++.
T Consensus 136 ----p~~~~~~il~~n~~~~------------------------il~tI~SRc-~~i~f~~~~~ 170 (325)
T COG0470 136 ----PPKNTRFILITNDPSK------------------------ILPTIRSRC-QRIRFKPPSR 170 (325)
T ss_pred ----CCCCeEEEEEcCChhh------------------------ccchhhhcc-eeeecCCchH
Confidence 5689999999995443 455699999 8999999444
No 337
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=5.2e-11 Score=126.94 Aligned_cols=162 Identities=15% Similarity=0.190 Sum_probs=109.6
Q ss_pred cCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccc---cc-cccchh
Q psy2887 389 RVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE---FI-EKHSIS 464 (899)
Q Consensus 389 ~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~---~~-~~~~~~ 464 (899)
-..++..+.+.+..++...+. | +.+||+||+|+||+++|.++|+.++..+..- .-.|.. +. ..|..-
T Consensus 5 ~yPW~~~~~~~l~~~~~~~rl-------~-HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~-~~~c~~c~~~~~g~HPD~ 75 (319)
T PRK08769 5 FSPWQQRAYDQTVAALDAGRL-------G-HGLLICGPEGLGKRAVALALAEHVLASGPDP-AAAQRTRQLIAAGTHPDL 75 (319)
T ss_pred ccccHHHHHHHHHHHHHcCCc-------c-eeEeeECCCCCCHHHHHHHHHHHHhCCCCCC-CCcchHHHHHhcCCCCCE
Confidence 345788888899888876442 2 2699999999999999999999996533110 001111 00 111111
Q ss_pred hccCCCCCc--------ccccccchhhHHHHhC----CCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCe
Q psy2887 465 RLIGAPPGY--------IGYEEGGYLTEIVRRK----PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNT 532 (899)
Q Consensus 465 ~l~g~~~~~--------~g~~~~~~l~~~~~~~----~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ 532 (899)
.++...|.. ++.+..+.+.+.+... ...|++||++|+|+...+|.||+.||+ +..++
T Consensus 76 ~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~~ 144 (319)
T PRK08769 76 QLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEE-----------PSPGR 144 (319)
T ss_pred EEEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhC-----------CCCCC
Confidence 122111111 2222334444444433 357999999999999999999999998 66788
Q ss_pred EEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHH
Q psy2887 533 IIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN 595 (899)
Q Consensus 533 ~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~ 595 (899)
+||++|+.... +.|.++||| ..+.|.+++.++..+.+.
T Consensus 145 ~fiL~~~~~~~------------------------lLpTIrSRC-q~i~~~~~~~~~~~~~L~ 182 (319)
T PRK08769 145 YLWLISAQPAR------------------------LPATIRSRC-QRLEFKLPPAHEALAWLL 182 (319)
T ss_pred eEEEEECChhh------------------------CchHHHhhh-eEeeCCCcCHHHHHHHHH
Confidence 89999986443 556699999 899999999988877654
No 338
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=9.5e-11 Score=118.52 Aligned_cols=170 Identities=25% Similarity=0.318 Sum_probs=115.7
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchH-HHHHHHHHHHHH---hcCCC
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEF-EDRLKKILKEIS---NNQKD 86 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~-~~~l~~~~~~~~---~~~~~ 86 (899)
-.++||||+||.|||||.||+.||+.+ +.++...|+..+.. ..|+|+- |.-+.+++..+. .....
T Consensus 95 L~KSNILLiGPTGsGKTlLAqTLAk~L----------nVPFaiADATtLTE-AGYVGEDVENillkLlqaadydV~rAer 163 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQTLAKIL----------NVPFAIADATTLTE-AGYVGEDVENILLKLLQAADYDVERAER 163 (408)
T ss_pred eeeccEEEECCCCCcHHHHHHHHHHHh----------CCCeeeccccchhh-ccccchhHHHHHHHHHHHcccCHHHHhC
Confidence 568899999999999999999999999 88888888877764 4588874 545566666543 12335
Q ss_pred EEEEEccccccccCCCCC------chhhHHHhhhhhhcC-----------------------CceEEEEecChhHH----
Q psy2887 87 IIIFIDELHTMIGTGKVE------GSIDAGNMLKPELSR-----------------------GELHCIGATTLNEY---- 133 (899)
Q Consensus 87 ~iL~iDEi~~l~~~~~~~------~~~~~~~~l~~~l~~-----------------------~~v~vI~at~~~~~---- 133 (899)
+|++|||+|.+....... .+..++.+|+..++. .++.||+.+-....
T Consensus 164 GIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI 243 (408)
T COG1219 164 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKII 243 (408)
T ss_pred CeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHH
Confidence 699999999998755321 223466788888741 13444443321110
Q ss_pred -----------------------------------HHhhhcCHHHHhcccc-ccccCCCHHHHHHHHH----hhhhhhhc
Q psy2887 134 -----------------------------------RQYIEKDAAFERRFQK-ILVEEPDIEETISILR----GLQKKYEV 173 (899)
Q Consensus 134 -----------------------------------~~~~~ld~al~~Rf~~-i~l~~p~~~e~~~il~----~~~~~~~~ 173 (899)
--.+-+-|.|.-|+++ ..+.+.+.+..++||. .+.++|..
T Consensus 244 ~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~ 323 (408)
T COG1219 244 KKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQK 323 (408)
T ss_pred HHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHH
Confidence 0123355677788886 5689999999999984 45555553
Q ss_pred ---ccC--CCCCHHHHHHHHhhh
Q psy2887 174 ---HHG--VEITDPAIVAASELS 191 (899)
Q Consensus 174 ---~~~--~~~~~~~~~~~~~~~ 191 (899)
..+ +.++++++.++++.+
T Consensus 324 Lf~~d~V~L~F~~~AL~~IA~~A 346 (408)
T COG1219 324 LFEMDGVELEFTEEALKAIAKKA 346 (408)
T ss_pred HhcccCceEEEcHHHHHHHHHHH
Confidence 222 467888888777664
No 339
>PRK04132 replication factor C small subunit; Provisional
Probab=99.24 E-value=5.7e-11 Score=140.44 Aligned_cols=163 Identities=20% Similarity=0.267 Sum_probs=128.9
Q ss_pred CeEEEc--CCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcC-----CCE
Q psy2887 15 NPVLIG--EPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQ-----KDI 87 (899)
Q Consensus 15 ~iLL~G--ppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~-----~~~ 87 (899)
+-+..| |++.||||+|+++|+.+...+ .+..+++++.+.. .|. ..++++++++.... ...
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~-----~~~~~lElNASd~------rgi--d~IR~iIk~~a~~~~~~~~~~K 632 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGEN-----WRHNFLELNASDE------RGI--NVIREKVKEFARTKPIGGASFK 632 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhccc-----ccCeEEEEeCCCc------ccH--HHHHHHHHHHHhcCCcCCCCCE
Confidence 345668 999999999999999873211 1456888886542 121 24677766654221 236
Q ss_pred EEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHHHHHHHHH
Q psy2887 88 IIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILR 165 (899)
Q Consensus 88 iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~il~ 165 (899)
|+||||+|.|.. ++++.|+..|+. +.+.+|++||+.. .+.+++++||..+.|++|+.++....|+
T Consensus 633 VvIIDEaD~Lt~--------~AQnALLk~lEep~~~~~FILi~N~~~-----kIi~tIrSRC~~i~F~~ls~~~i~~~L~ 699 (846)
T PRK04132 633 IIFLDEADALTQ--------DAQQALRRTMEMFSSNVRFILSCNYSS-----KIIEPIQSRCAIFRFRPLRDEDIAKRLR 699 (846)
T ss_pred EEEEECcccCCH--------HHHHHHHHHhhCCCCCeEEEEEeCChh-----hCchHHhhhceEEeCCCCCHHHHHHHHH
Confidence 999999999964 678899999985 7899999999988 8889999999999999999999999998
Q ss_pred hhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHH
Q psy2887 166 GLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAA 213 (899)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~ 213 (899)
.++++ .++.++++++..++..+++.+. +++.+++.++.
T Consensus 700 ~I~~~----Egi~i~~e~L~~Ia~~s~GDlR------~AIn~Lq~~~~ 737 (846)
T PRK04132 700 YIAEN----EGLELTEEGLQAILYIAEGDMR------RAINILQAAAA 737 (846)
T ss_pred HHHHh----cCCCCCHHHHHHHHHHcCCCHH------HHHHHHHHHHH
Confidence 88775 5688999999999999988766 88888887654
No 340
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.23 E-value=3.3e-11 Score=129.87 Aligned_cols=142 Identities=18% Similarity=0.249 Sum_probs=96.7
Q ss_pred eEEEEecCCCChHHHHHHHHHHHhccCCCc--eEEecccc---ccc-ccchhhccCCC--CCcccccccchhhHHHHh--
Q psy2887 419 GSFMFLGPTGVGKTELCKTLSACIFNNEES--IIRIDMSE---FIE-KHSISRLIGAP--PGYIGYEEGGYLTEIVRR-- 488 (899)
Q Consensus 419 ~~ill~GppGtGKT~lA~~la~~l~~~~~~--~~~~~~~~---~~~-~~~~~~l~g~~--~~~~g~~~~~~l~~~~~~-- 488 (899)
+.+||+||+|+|||++|+++|+.+...... -.+-.|.. +.. .|.....+... ...++.+..+.+.+.+..
T Consensus 23 ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~~ 102 (328)
T PRK05707 23 HAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQTA 102 (328)
T ss_pred eeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhcc
Confidence 369999999999999999999999543210 00111111 100 01101111110 012344444555555544
Q ss_pred --CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhh
Q psy2887 489 --KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKI 566 (899)
Q Consensus 489 --~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 566 (899)
++..|++||++|+++...+|.||+.||+ +..+++||++|+....
T Consensus 103 ~~~~~kv~iI~~a~~m~~~aaNaLLK~LEE-----------Pp~~~~fiL~t~~~~~----------------------- 148 (328)
T PRK05707 103 QLGGRKVVLIEPAEAMNRNAANALLKSLEE-----------PSGDTVLLLISHQPSR----------------------- 148 (328)
T ss_pred ccCCCeEEEECChhhCCHHHHHHHHHHHhC-----------CCCCeEEEEEECChhh-----------------------
Confidence 3467999999999999999999999998 5678899999986443
Q ss_pred cCChhHhhccCeEEEecCCCHHHHHHHHHH
Q psy2887 567 YFRPEFINRIDDIIVFRYLNRKNILSIANI 596 (899)
Q Consensus 567 ~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~ 596 (899)
+.|.++||| ..+.|.|++.+++.+.+..
T Consensus 149 -ll~TI~SRc-~~~~~~~~~~~~~~~~L~~ 176 (328)
T PRK05707 149 -LLPTIKSRC-QQQACPLPSNEESLQWLQQ 176 (328)
T ss_pred -CcHHHHhhc-eeeeCCCcCHHHHHHHHHH
Confidence 567799999 8899999999998877654
No 341
>KOG2035|consensus
Probab=99.23 E-value=1.7e-10 Score=114.52 Aligned_cols=170 Identities=18% Similarity=0.304 Sum_probs=125.4
Q ss_pred eEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccch----h-----hccCCCCCcccccccchhhHHHH--
Q psy2887 419 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSI----S-----RLIGAPPGYIGYEEGGYLTEIVR-- 487 (899)
Q Consensus 419 ~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~----~-----~l~g~~~~~~g~~~~~~l~~~~~-- 487 (899)
+|++||||+|+||.|.+.++-+.+||.+..=..++...+.....- + ..+--.|.-.|..+.-.+.+.++
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKev 114 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEV 114 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHH
Confidence 379999999999999999999999998876666666655543211 0 11111233334444323333332
Q ss_pred ----------hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHH
Q psy2887 488 ----------RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIK 557 (899)
Q Consensus 488 ----------~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~ 557 (899)
+.++.|++|.|+|++..++|.+|...||. ..+++.+|+.+|.-+.
T Consensus 115 AQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEk-----------Ys~~~RlIl~cns~Sr-------------- 169 (351)
T KOG2035|consen 115 AQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEK-----------YSSNCRLILVCNSTSR-------------- 169 (351)
T ss_pred HhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHH-----------HhcCceEEEEecCccc--------------
Confidence 23578999999999999999999999996 5688999999997554
Q ss_pred HHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCccccccccc
Q psy2887 558 LAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVH 637 (899)
Q Consensus 558 ~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~ 637 (899)
+-+++.+|| ..|.++.++.+|+..++...+ ++++ +.++.+.+..+++.+ -|+++
T Consensus 170 ----------iIepIrSRC-l~iRvpaps~eeI~~vl~~v~-------~kE~--l~lp~~~l~rIa~kS------~~nLR 223 (351)
T KOG2035|consen 170 ----------IIEPIRSRC-LFIRVPAPSDEEITSVLSKVL-------KKEG--LQLPKELLKRIAEKS------NRNLR 223 (351)
T ss_pred ----------chhHHhhhe-eEEeCCCCCHHHHHHHHHHHH-------HHhc--ccCcHHHHHHHHHHh------cccHH
Confidence 445589999 899999999999999987777 3455 667799999998843 46666
Q ss_pred cc
Q psy2887 638 GC 639 (899)
Q Consensus 638 ~~ 639 (899)
+.
T Consensus 224 rA 225 (351)
T KOG2035|consen 224 RA 225 (351)
T ss_pred HH
Confidence 55
No 342
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.23 E-value=1e-10 Score=135.42 Aligned_cols=142 Identities=13% Similarity=0.157 Sum_probs=93.2
Q ss_pred HHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCC-----------ceEecCCeEEEEecCCChhhhhhhhcCcH
Q psy2887 485 IVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRG-----------RTINFRNTIIVMTSNLGSDKIKEMEKGDK 553 (899)
Q Consensus 485 ~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g-----------~~~~~~~~~iI~tsn~~~~~~~~~~~~~~ 553 (899)
.+.++.+++|||||++.+++..|..|+++|+++++....+ ..+ ..++.+|+++|...
T Consensus 221 ~L~kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~i-p~dvrvI~a~~~~l----------- 288 (637)
T PRK13765 221 AIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPV-PCDFIMVAAGNLDA----------- 288 (637)
T ss_pred ceeECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcce-eeeeEEEEecCcCH-----------
Confidence 3446667999999999999999999999999998764321 111 24678999999632
Q ss_pred HHHHHHHHHHHhhcCChhHhhccC---eEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCcc
Q psy2887 554 EIIKLAVMNEVKIYFRPEFINRID---DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLI 630 (899)
Q Consensus 554 ~~~~~~~~~~l~~~~~~~l~~R~~---~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~ 630 (899)
...++|+|.+||. ..+.|.+-. ++..+....++..+.+.+...+....++++++..|.+ -|.+.
T Consensus 289 -----------l~~~dpdL~~rfk~~~v~v~f~~~~-~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~-~~~R~ 355 (637)
T PRK13765 289 -----------LENMHPALRSRIKGYGYEVYMRDTM-EDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIR-EAKRR 355 (637)
T ss_pred -----------HHhhhHHHHHHhccCeEEEEccccc-CCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHH-HHHHH
Confidence 1235788999995 556665533 3445555666666666666554446899999999987 33344
Q ss_pred ccccc-ccccHHHHHHHHHHhh
Q psy2887 631 YGARD-VHGCKKSLSILLKKIH 651 (899)
Q Consensus 631 ~~~~d-i~~~~~~l~~~l~~~~ 651 (899)
-+.++ +--....|..++..++
T Consensus 356 ag~r~~lsl~~~~l~~l~r~a~ 377 (637)
T PRK13765 356 AGRKGHLTLKLRDLGGLVRVAG 377 (637)
T ss_pred hCCccccccCHHHHHHHHHHHH
Confidence 44444 1122334555554444
No 343
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=1.4e-10 Score=135.15 Aligned_cols=173 Identities=21% Similarity=0.207 Sum_probs=126.8
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCC---------------CccCCCeEEEEehhhhhcCcccCchHHHHHHHH
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVP---------------NSLLSKKILLLDIALLLAGTKYRGEFEDRLKKI 76 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p---------------~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~ 76 (899)
-...+||+||+|+|||++|+++|+.+...... .......++.++.. +. .....++.+
T Consensus 38 l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~------~~--~~vd~Ir~l 109 (614)
T PRK14971 38 LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAA------SN--NSVDDIRNL 109 (614)
T ss_pred CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEeccc------cc--CCHHHHHHH
Confidence 33448999999999999999999988432110 00112233434321 11 113457777
Q ss_pred HHHHHh---cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhcccccc
Q psy2887 77 LKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKIL 151 (899)
Q Consensus 77 ~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~ 151 (899)
++++.. .+..-|++|||+|.|.. .+.+.|+.+|+. ...++|++|+... .+-+++++|+..+.
T Consensus 110 i~~~~~~P~~~~~KVvIIdea~~Ls~--------~a~naLLK~LEepp~~tifIL~tt~~~-----kIl~tI~SRc~iv~ 176 (614)
T PRK14971 110 IEQVRIPPQIGKYKIYIIDEVHMLSQ--------AAFNAFLKTLEEPPSYAIFILATTEKH-----KILPTILSRCQIFD 176 (614)
T ss_pred HHHHhhCcccCCcEEEEEECcccCCH--------HHHHHHHHHHhCCCCCeEEEEEeCCch-----hchHHHHhhhheee
Confidence 766642 12345999999999953 678899999986 4578888887665 78899999999999
Q ss_pred ccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhh
Q psy2887 152 VEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 215 (899)
Q Consensus 152 l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~ 215 (899)
|..++.++...+++.++.+ .++.++++++..++..+++.+. ++..+++..+...
T Consensus 177 f~~ls~~ei~~~L~~ia~~----egi~i~~~al~~La~~s~gdlr------~al~~Lekl~~y~ 230 (614)
T PRK14971 177 FNRIQVADIVNHLQYVASK----EGITAEPEALNVIAQKADGGMR------DALSIFDQVVSFT 230 (614)
T ss_pred cCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHH------HHHHHHHHHHHhc
Confidence 9999999999999988876 5788999999999999988665 7888887766543
No 344
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.23 E-value=2.6e-10 Score=118.13 Aligned_cols=161 Identities=15% Similarity=0.152 Sum_probs=105.5
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
....+++|+||+|||||+||+++++.+... +..++.+++..... .+... ....+|+
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~-------~~~~~~i~~~~~~~--------------~~~~~---~~~~~li 95 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYG-------GRNARYLDAASPLL--------------AFDFD---PEAELYA 95 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCcEEEEehHHhHH--------------HHhhc---ccCCEEE
Confidence 345689999999999999999999987443 55677777654321 01111 2245899
Q ss_pred EccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhccc---cccccCCCHHHHHHHHHhh
Q psy2887 91 IDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQ---KILVEEPDIEETISILRGL 167 (899)
Q Consensus 91 iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~---~i~l~~p~~~e~~~il~~~ 167 (899)
|||++.+.... .......+...-+.+..++|.+++..+ ....+.+.|.+||. .+.+++|+..++..+++.+
T Consensus 96 iDdi~~l~~~~----~~~L~~~~~~~~~~~~~~vl~~~~~~~--~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 96 VDDVERLDDAQ----QIALFNLFNRVRAHGQGALLVAGPAAP--LALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred EeChhhcCchH----HHHHHHHHHHHHHcCCcEEEEeCCCCH--HhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 99999874311 112222222222455544555555433 12245688999983 4899999998888888866
Q ss_pred hhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHH
Q psy2887 168 QKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEA 211 (899)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a 211 (899)
... .++.+++++++.+++.+.+.+. .+.++++..
T Consensus 170 ~~~----~~v~l~~~al~~L~~~~~gn~~------~l~~~l~~l 203 (227)
T PRK08903 170 AAE----RGLQLADEVPDYLLTHFRRDMP------SLMALLDAL 203 (227)
T ss_pred HHH----cCCCCCHHHHHHHHHhccCCHH------HHHHHHHHH
Confidence 654 5789999999999987766544 555555543
No 345
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.22 E-value=1.1e-10 Score=136.13 Aligned_cols=193 Identities=15% Similarity=0.165 Sum_probs=122.2
Q ss_pred ceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccc--hhhHHHHhCCCEEEE
Q psy2887 418 YGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGG--YLTEIVRRKPYSLIL 495 (899)
Q Consensus 418 ~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~--~l~~~~~~~~~~vl~ 495 (899)
.+++||.|+||||||++|+++++.+.. ..+|+.+.+... ...++|.-.-+.....+. .-...+..+..+|||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~-~~pfv~i~~~~t-----~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~ 89 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPP-IMPFVELPLGVT-----EDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLY 89 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCc-CCCeEecCcccc-----hhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEe
Confidence 568999999999999999999998732 346888774211 233444321000000000 011223445668999
Q ss_pred EccccccCHHHHHHHHHhhcCCceecC-CCceEe-cCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHh
Q psy2887 496 LDEIEKANSDVFNILLQILDDGRLTDN-RGRTIN-FRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI 573 (899)
Q Consensus 496 lDEid~~~~~~~~~Ll~~le~g~~~~~-~g~~~~-~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 573 (899)
+|||+.+++.+|+.|+++|++|.++.. .|.... ..++.+|+|+|.... .+.|++.|+
T Consensus 90 lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~---------------------~g~L~~~Ll 148 (589)
T TIGR02031 90 VDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEG---------------------GGGLPDHLL 148 (589)
T ss_pred ccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccc---------------------cCCCCHHHH
Confidence 999999999999999999999986532 233332 356788888885421 246899999
Q ss_pred hccCeEEEecCC-CHHHHHHHHHHHHHHHH-----------H---HHHhcCcceeecHHHHHHHHhcccCcccccccccc
Q psy2887 574 NRIDDIIVFRYL-NRKNILSIANIQLNILK-----------N---KLLKMNMDLKISKAALKKISNIGFDLIYGARDVHG 638 (899)
Q Consensus 574 ~R~~~~i~f~~l-~~~~~~~i~~~~l~~~~-----------~---~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~ 638 (899)
+||+..|...++ ..++..+|+...+..+. + ..+..-..+.+++++++++..... .+++...++
T Consensus 149 dRf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~--~~gv~s~Ra 226 (589)
T TIGR02031 149 DRLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAA--SLGISGHRA 226 (589)
T ss_pred HhccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHH--HcCCCCccH
Confidence 999887766654 44556777776653221 0 111122357889999999987443 344443344
Q ss_pred c
Q psy2887 639 C 639 (899)
Q Consensus 639 ~ 639 (899)
.
T Consensus 227 ~ 227 (589)
T TIGR02031 227 D 227 (589)
T ss_pred H
Confidence 3
No 346
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.22 E-value=4.6e-10 Score=112.24 Aligned_cols=145 Identities=21% Similarity=0.323 Sum_probs=106.8
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
.+.+|+||+|++|||||++++++..+.... +.+++++.-..+. .+..+++.+.....+.|||
T Consensus 50 ~pannvLL~G~rGtGKSSlVkall~~y~~~-------GLRlIev~k~~L~-----------~l~~l~~~l~~~~~kFIlf 111 (249)
T PF05673_consen 50 LPANNVLLWGARGTGKSSLVKALLNEYADQ-------GLRLIEVSKEDLG-----------DLPELLDLLRDRPYKFILF 111 (249)
T ss_pred CCCcceEEecCCCCCHHHHHHHHHHHHhhc-------CceEEEECHHHhc-----------cHHHHHHHHhcCCCCEEEE
Confidence 567899999999999999999999988554 6788888766554 3777777777666789999
Q ss_pred EccccccccCCCCCchhhHHHhhhhhhcC------CceEEEEecChhHHHHhh----------hcCH--------HHHhc
Q psy2887 91 IDELHTMIGTGKVEGSIDAGNMLKPELSR------GELHCIGATTLNEYRQYI----------EKDA--------AFERR 146 (899)
Q Consensus 91 iDEi~~l~~~~~~~~~~~~~~~l~~~l~~------~~v~vI~at~~~~~~~~~----------~ld~--------al~~R 146 (899)
+|++. +... ......|+.+|+. .++++.+|+|.-..-+.. ++++ +|..|
T Consensus 112 ~DDLs--Fe~~-----d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDR 184 (249)
T PF05673_consen 112 CDDLS--FEEG-----DTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDR 184 (249)
T ss_pred ecCCC--CCCC-----cHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHh
Confidence 99866 4332 2344567777753 468888888865421110 1111 57779
Q ss_pred ccc-ccccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHH
Q psy2887 147 FQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAI 184 (899)
Q Consensus 147 f~~-i~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~ 184 (899)
|.. |.|.+|+.++-.+|++.++++ .++.++++.+
T Consensus 185 FGL~l~F~~~~q~~YL~IV~~~~~~----~g~~~~~e~l 219 (249)
T PF05673_consen 185 FGLWLSFYPPDQEEYLAIVRHYAER----YGLELDEEEL 219 (249)
T ss_pred CCcEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHH
Confidence 996 999999999999999999987 4667775433
No 347
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=1.1e-10 Score=124.31 Aligned_cols=160 Identities=13% Similarity=0.160 Sum_probs=110.9
Q ss_pred CCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccccc-------ccc
Q psy2887 390 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE-------KHS 462 (899)
Q Consensus 390 v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~-------~~~ 462 (899)
.-++....+.+..++...+. .+.+||+||.|+||+++|+.+|+.+......- ..|....+ .|.
T Consensus 5 yPWl~~~~~~l~~~~~~~rl--------~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~--~~Cg~C~sC~~~~~g~HP 74 (319)
T PRK06090 5 YPWLVPVWQNWKAGLDAGRI--------PGALLLQSDEGLGVESLVELFSRALLCQNYQS--EACGFCHSCELMQSGNHP 74 (319)
T ss_pred cccHHHHHHHHHHHHHcCCc--------ceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC--CCCCCCHHHHHHHcCCCC
Confidence 34777888888888775442 23799999999999999999999995433210 11211110 111
Q ss_pred hhhccCCC--CCcccccccchhhHHHHhC----CCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEE
Q psy2887 463 ISRLIGAP--PGYIGYEEGGYLTEIVRRK----PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVM 536 (899)
Q Consensus 463 ~~~l~g~~--~~~~g~~~~~~l~~~~~~~----~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ 536 (899)
.-..+... ...++.++.+.+.+.+... +..|++||++|++....+|+||+.||+ +..+++||+
T Consensus 75 D~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~t~fiL 143 (319)
T PRK06090 75 DLHVIKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEE-----------PAPNCLFLL 143 (319)
T ss_pred CEEEEecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcC-----------CCCCeEEEE
Confidence 11112111 1123444445555555433 367999999999999999999999999 678899999
Q ss_pred ecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHH
Q psy2887 537 TSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN 595 (899)
Q Consensus 537 tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~ 595 (899)
+|+.... +.|-++||| ..+.|++++.+++.+.+.
T Consensus 144 ~t~~~~~------------------------lLpTI~SRC-q~~~~~~~~~~~~~~~L~ 177 (319)
T PRK06090 144 VTHNQKR------------------------LLPTIVSRC-QQWVVTPPSTAQAMQWLK 177 (319)
T ss_pred EECChhh------------------------ChHHHHhcc-eeEeCCCCCHHHHHHHHH
Confidence 9886444 456699999 899999999999887754
No 348
>KOG2680|consensus
Probab=99.21 E-value=8.6e-11 Score=117.39 Aligned_cols=103 Identities=21% Similarity=0.380 Sum_probs=81.6
Q ss_pred CEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCCh
Q psy2887 491 YSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRP 570 (899)
Q Consensus 491 ~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 570 (899)
++||||||++.++-+.++.|...+|+ ++ ..++|++||.+...+......+ -..++-
T Consensus 289 pGVLFIDEvHMLDIEcFsFlNrAlE~-----------d~-~PiiimaTNrgit~iRGTn~~S------------phGiP~ 344 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDIECFSFLNRALEN-----------DM-APIIIMATNRGITRIRGTNYRS------------PHGIPI 344 (454)
T ss_pred cceEEEeeehhhhhHHHHHHHHHhhh-----------cc-CcEEEEEcCCceEEeecCCCCC------------CCCCcH
Confidence 68999999999999999999999997 23 4578899998776554432221 234677
Q ss_pred hHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhccc
Q psy2887 571 EFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGF 627 (899)
Q Consensus 571 ~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 627 (899)
+|++|+ .+|...|++++++++|+...+ .++ .+.++++|+++|...+.
T Consensus 345 D~lDR~-lII~t~py~~~d~~~IL~iRc-------~EE--dv~m~~~A~d~Lt~i~~ 391 (454)
T KOG2680|consen 345 DLLDRM-LIISTQPYTEEDIKKILRIRC-------QEE--DVEMNPDALDLLTKIGE 391 (454)
T ss_pred HHhhhh-heeecccCcHHHHHHHHHhhh-------hhh--ccccCHHHHHHHHHhhh
Confidence 899999 899999999999999987665 223 37889999999987543
No 349
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.21 E-value=7.7e-11 Score=143.54 Aligned_cols=179 Identities=21% Similarity=0.305 Sum_probs=125.5
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhcc-------CCCceEEecccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFN-------NEESIIRIDMSEFIEK 460 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~-------~~~~~~~~~~~~~~~~ 460 (899)
..++|++..++.+...+.+.. ..+++|+||||||||++|+.+|..+.. .+..++.++++.+...
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~---------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag 249 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT---------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAG 249 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc---------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhcc
Confidence 568999999999999886532 226899999999999999999998842 2356777776654321
Q ss_pred cchhhccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccCH--------HHHHHHHHhhcCCceecCCCceEecC
Q psy2887 461 HSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS--------DVFNILLQILDDGRLTDNRGRTINFR 530 (899)
Q Consensus 461 ~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~--------~~~~~Ll~~le~g~~~~~~g~~~~~~ 530 (899)
..|.|..+. +.+.+.+....+.||||||++.+.. ++.+.|...+..|.
T Consensus 250 ----------~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~------------ 307 (821)
T CHL00095 250 ----------TKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGE------------ 307 (821)
T ss_pred ----------CCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCC------------
Confidence 125554443 3445555556678999999985542 46788888887643
Q ss_pred CeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhc--CChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy2887 531 NTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIY--FRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKM 608 (899)
Q Consensus 531 ~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~ 608 (899)
..+|.+||...- ++. -.|.|.+|| ..|.+.+++.++...|++.....+.+..
T Consensus 308 -l~~IgaTt~~ey---------------------~~~ie~D~aL~rRf-~~I~v~ep~~~e~~aILr~l~~~~e~~~--- 361 (821)
T CHL00095 308 -LQCIGATTLDEY---------------------RKHIEKDPALERRF-QPVYVGEPSVEETIEILFGLRSRYEKHH--- 361 (821)
T ss_pred -cEEEEeCCHHHH---------------------HHHHhcCHHHHhcc-eEEecCCCCHHHHHHHHHHHHHHHHHHc---
Confidence 457888884211 111 357789999 6789999999999999877665544332
Q ss_pred CcceeecHHHHHHHHhc
Q psy2887 609 NMDLKISKAALKKISNI 625 (899)
Q Consensus 609 ~~~~~~~~~~~~~L~~~ 625 (899)
+ +.++++++..+...
T Consensus 362 ~--v~i~deal~~i~~l 376 (821)
T CHL00095 362 N--LSISDKALEAAAKL 376 (821)
T ss_pred C--CCCCHHHHHHHHHH
Confidence 2 44788888887763
No 350
>KOG0745|consensus
Probab=99.21 E-value=1.6e-10 Score=121.32 Aligned_cols=170 Identities=23% Similarity=0.351 Sum_probs=117.7
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCch-HHHHHHHHHHHHH---hcCCC
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGE-FEDRLKKILKEIS---NNQKD 86 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~-~~~~l~~~~~~~~---~~~~~ 86 (899)
-.++||||.||+|+|||.||+.||+.+ +.++...||..+... .|+|+ .+..+..++..|. ...+.
T Consensus 224 LeKSNvLllGPtGsGKTllaqTLAr~l----------dVPfaIcDcTtLTQA-GYVGeDVEsvi~KLl~~A~~nVekAQq 292 (564)
T KOG0745|consen 224 LEKSNVLLLGPTGSGKTLLAQTLARVL----------DVPFAICDCTTLTQA-GYVGEDVESVIQKLLQEAEYNVEKAQQ 292 (564)
T ss_pred eecccEEEECCCCCchhHHHHHHHHHh----------CCCeEEecccchhhc-ccccccHHHHHHHHHHHccCCHHHHhc
Confidence 468899999999999999999999999 899999999988764 47776 5667788888765 22345
Q ss_pred EEEEEccccccccCCCC------CchhhHHHhhhhhhcC---------------C--------ceEEEEecChhHHHH--
Q psy2887 87 IIIFIDELHTMIGTGKV------EGSIDAGNMLKPELSR---------------G--------ELHCIGATTLNEYRQ-- 135 (899)
Q Consensus 87 ~iL~iDEi~~l~~~~~~------~~~~~~~~~l~~~l~~---------------~--------~v~vI~at~~~~~~~-- 135 (899)
+|+||||+|.|.....+ -++..++..|+.++|. + +|.||+.+-..+..+
T Consensus 293 GIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I 372 (564)
T KOG0745|consen 293 GIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKII 372 (564)
T ss_pred CeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHH
Confidence 69999999999843222 1233466677777731 1 244444332111000
Q ss_pred -------------------------------------------------hhhcCHHHHhcccc-ccccCCCHHHHHHHHH
Q psy2887 136 -------------------------------------------------YIEKDAAFERRFQK-ILVEEPDIEETISILR 165 (899)
Q Consensus 136 -------------------------------------------------~~~ld~al~~Rf~~-i~l~~p~~~e~~~il~ 165 (899)
.+-+-|.|.-||++ +.|..++..+.+++|.
T Consensus 373 ~rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLt 452 (564)
T KOG0745|consen 373 SRRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLT 452 (564)
T ss_pred HHhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHh
Confidence 12245677889986 7799999999988883
Q ss_pred ----hhhhhhhcc-----cCCCCCHHHHHHHHhhh
Q psy2887 166 ----GLQKKYEVH-----HGVEITDPAIVAASELS 191 (899)
Q Consensus 166 ----~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 191 (899)
.+.++|... -.+.+++++++.+++++
T Consensus 453 EPknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~A 487 (564)
T KOG0745|consen 453 EPKNALGKQYKKLFGMDNVELHFTEKALEAIAQLA 487 (564)
T ss_pred cchhhHHHHHHHHhccCCeeEEecHHHHHHHHHHH
Confidence 345555432 22468888888887775
No 351
>PRK06620 hypothetical protein; Validated
Probab=99.21 E-value=1.3e-10 Score=117.76 Aligned_cols=144 Identities=20% Similarity=0.271 Sum_probs=91.8
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 499 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 499 (899)
+++|+||||||||+|++++++.. +..++. .... .....+ ...+|+||||
T Consensus 46 ~l~l~Gp~G~GKThLl~a~~~~~---~~~~~~--~~~~------------------------~~~~~~--~~d~lliDdi 94 (214)
T PRK06620 46 TLLIKGPSSSGKTYLTKIWQNLS---NAYIIK--DIFF------------------------NEEILE--KYNAFIIEDI 94 (214)
T ss_pred eEEEECCCCCCHHHHHHHHHhcc---CCEEcc--hhhh------------------------chhHHh--cCCEEEEecc
Confidence 69999999999999999998765 322211 0000 001111 2359999999
Q ss_pred cccCHHHHHHHHH-hhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccC-
Q psy2887 500 EKANSDVFNILLQ-ILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRID- 577 (899)
Q Consensus 500 d~~~~~~~~~Ll~-~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~- 577 (899)
+.+....+-.++. +.+. +..+|+|++..+..+ .+ |+|.+|+.
T Consensus 95 ~~~~~~~lf~l~N~~~e~--------------g~~ilits~~~p~~l---------------------~l-~~L~SRl~~ 138 (214)
T PRK06620 95 ENWQEPALLHIFNIINEK--------------QKYLLLTSSDKSRNF---------------------TL-PDLSSRIKS 138 (214)
T ss_pred ccchHHHHHHHHHHHHhc--------------CCEEEEEcCCCcccc---------------------ch-HHHHHHHhC
Confidence 9764322222222 2233 235677777655421 14 78999993
Q ss_pred -eEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCcccccccccccHHHHHH
Q psy2887 578 -DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSI 645 (899)
Q Consensus 578 -~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~ 645 (899)
.++.+.+++.+++..++.+.... .+ +.++++++++|++.. -||++.....|+.
T Consensus 139 gl~~~l~~pd~~~~~~~l~k~~~~-------~~--l~l~~ev~~~L~~~~------~~d~r~l~~~l~~ 192 (214)
T PRK06620 139 VLSILLNSPDDELIKILIFKHFSI-------SS--VTISRQIIDFLLVNL------PREYSKIIEILEN 192 (214)
T ss_pred CceEeeCCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHHc------cCCHHHHHHHHHH
Confidence 28999999999998888776632 33 789999999999832 3555554444554
No 352
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.21 E-value=1e-10 Score=126.34 Aligned_cols=161 Identities=12% Similarity=0.088 Sum_probs=110.5
Q ss_pred CChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCc--eEEeccccc---cc-ccchh
Q psy2887 391 VGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES--IIRIDMSEF---IE-KHSIS 464 (899)
Q Consensus 391 ~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~--~~~~~~~~~---~~-~~~~~ 464 (899)
-++..+.+.+.+.+...+. .+.+||+||+|+||+++|.++|+.++..... --+-.|... .. .|..-
T Consensus 5 PWl~~~~~~l~~~~~~~rl--------~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~ 76 (334)
T PRK07993 5 PWLRPDYEQLVGSYQAGRG--------HHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDY 76 (334)
T ss_pred CCChHHHHHHHHHHHcCCc--------ceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCE
Confidence 4677778888888776442 2379999999999999999999999542210 011112111 00 11111
Q ss_pred hccCCCC--CcccccccchhhHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEec
Q psy2887 465 RLIGAPP--GYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTS 538 (899)
Q Consensus 465 ~l~g~~~--~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ts 538 (899)
.++.... ..++.++.+.+.+.+.. +...|++||++|+|.....|.||+.||+ +..+++||++|
T Consensus 77 ~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~t~fiL~t 145 (334)
T PRK07993 77 YTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEE-----------PPENTWFFLAC 145 (334)
T ss_pred EEEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcC-----------CCCCeEEEEEE
Confidence 1121111 12444455556555543 3457999999999999999999999999 67889999999
Q ss_pred CCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHH
Q psy2887 539 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN 595 (899)
Q Consensus 539 n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~ 595 (899)
+.... +.|-++||| +.+.|+|++.+++.+.+.
T Consensus 146 ~~~~~------------------------lLpTIrSRC-q~~~~~~~~~~~~~~~L~ 177 (334)
T PRK07993 146 REPAR------------------------LLATLRSRC-RLHYLAPPPEQYALTWLS 177 (334)
T ss_pred CChhh------------------------ChHHHHhcc-ccccCCCCCHHHHHHHHH
Confidence 86544 556689999 789999999998887654
No 353
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.21 E-value=9.6e-11 Score=125.97 Aligned_cols=141 Identities=15% Similarity=0.170 Sum_probs=95.4
Q ss_pred eEEEEecCCCChHHHHHHHHHHHhccCCC-c--eEEecccccc----cccchhhccCCC---------------------
Q psy2887 419 GSFMFLGPTGVGKTELCKTLSACIFNNEE-S--IIRIDMSEFI----EKHSISRLIGAP--------------------- 470 (899)
Q Consensus 419 ~~ill~GppGtGKT~lA~~la~~l~~~~~-~--~~~~~~~~~~----~~~~~~~l~g~~--------------------- 470 (899)
+.+||+||+|+||+++|+.+|+.+..... + --+-.|.... ..|....++...
T Consensus 22 ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~~~ 101 (342)
T PRK06964 22 HALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADADEG 101 (342)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhhcc
Confidence 37999999999999999999999954321 0 0011121110 011111111110
Q ss_pred -------CCcccccccchhhHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecC
Q psy2887 471 -------PGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSN 539 (899)
Q Consensus 471 -------~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn 539 (899)
...++.++.+.+...+.. ++..|++||++|+|+....|.||+.||+ +..+++||++|+
T Consensus 102 ~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~t~fiL~t~ 170 (342)
T PRK06964 102 GKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEE-----------PPPGTVFLLVSA 170 (342)
T ss_pred cccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcC-----------CCcCcEEEEEEC
Confidence 012333333445444433 3457999999999999999999999998 678899999988
Q ss_pred CChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHH
Q psy2887 540 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN 595 (899)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~ 595 (899)
.... +.|.++||| ..+.|.|++.+++.+.+.
T Consensus 171 ~~~~------------------------LLpTI~SRc-q~i~~~~~~~~~~~~~L~ 201 (342)
T PRK06964 171 RIDR------------------------LLPTILSRC-RQFPMTVPAPEAAAAWLA 201 (342)
T ss_pred Chhh------------------------CcHHHHhcC-EEEEecCCCHHHHHHHHH
Confidence 6443 566799999 899999999999888764
No 354
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.20 E-value=7e-11 Score=143.49 Aligned_cols=176 Identities=19% Similarity=0.260 Sum_probs=117.2
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhcc-------CCCceEEecccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFN-------NEESIIRIDMSEFIEK 460 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~-------~~~~~~~~~~~~~~~~ 460 (899)
..++|+++.++.+...+.+.. .++++|+||||||||++|+.+|..+.. .+.+++.++++.+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~---------~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag 248 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT---------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAG 248 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC---------cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhc
Confidence 578999999888888776533 236899999999999999999999843 2456666666654321
Q ss_pred cchhhccCCCCCccccccc--chhhHHHH-hCCCEEEEEccccccCH--------HHHHHHHHhhcCCceecCCCceEec
Q psy2887 461 HSISRLIGAPPGYIGYEEG--GYLTEIVR-RKPYSLILLDEIEKANS--------DVFNILLQILDDGRLTDNRGRTINF 529 (899)
Q Consensus 461 ~~~~~l~g~~~~~~g~~~~--~~l~~~~~-~~~~~vl~lDEid~~~~--------~~~~~Ll~~le~g~~~~~~g~~~~~ 529 (899)
..|.|..+. +.++..+. ...+.||||||++.+.. +.++.|...++.|
T Consensus 249 ----------~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g------------ 306 (857)
T PRK10865 249 ----------AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG------------ 306 (857)
T ss_pred ----------cchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC------------
Confidence 114444333 23333333 34567999999998753 3688888888874
Q ss_pred CCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhh--cCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHh
Q psy2887 530 RNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKI--YFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLK 607 (899)
Q Consensus 530 ~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~ 607 (899)
...+|.+|+...- ++ ..+++|.+||+ .|.+..++.++...|++....+ +..
T Consensus 307 -~l~~IgaTt~~e~---------------------r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~----~e~ 359 (857)
T PRK10865 307 -ELHCVGATTLDEY---------------------RQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKER----YEL 359 (857)
T ss_pred -CCeEEEcCCCHHH---------------------HHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhh----hcc
Confidence 4558888885331 11 24788999995 6677777999998887644332 221
Q ss_pred cCcceeecHHHHHHH
Q psy2887 608 MNMDLKISKAALKKI 622 (899)
Q Consensus 608 ~~~~~~~~~~~~~~L 622 (899)
+ ..+.++++++...
T Consensus 360 ~-~~v~~~d~a~~~a 373 (857)
T PRK10865 360 H-HHVQITDPAIVAA 373 (857)
T ss_pred C-CCCCcCHHHHHHH
Confidence 1 1245555555444
No 355
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.20 E-value=1.4e-10 Score=111.14 Aligned_cols=150 Identities=24% Similarity=0.375 Sum_probs=99.4
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCC
Q psy2887 392 GQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPP 471 (899)
Q Consensus 392 gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 471 (899)
|++..+..+...+... +..+++++||||||||++++.+++.+...+.+++.+++.+...........+..
T Consensus 2 ~~~~~~~~i~~~~~~~---------~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 2 GQEEAIEALREALELP---------PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred chHHHHHHHHHHHhCC---------CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 5666777776666532 112699999999999999999999987667888888887765543222111100
Q ss_pred CcccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcC
Q psy2887 472 GYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKG 551 (899)
Q Consensus 472 ~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~ 551 (899)
.............+++|+|||++.+.+.....+++.++...... ....++.+|+++|....
T Consensus 72 ------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~ii~~~~~~~~-------- 132 (151)
T cd00009 72 ------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-----IDRENVRVIGATNRPLL-------- 132 (151)
T ss_pred ------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCcee-----ccCCCeEEEEecCcccc--------
Confidence 00011222233456899999999998888888888888632110 11356788888886442
Q ss_pred cHHHHHHHHHHHHhhcCChhHhhccCeEEEecC
Q psy2887 552 DKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRY 584 (899)
Q Consensus 552 ~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~ 584 (899)
..+.+.+.+||+..+.++|
T Consensus 133 --------------~~~~~~~~~r~~~~i~~~~ 151 (151)
T cd00009 133 --------------GDLDRALYDRLDIRIVIPL 151 (151)
T ss_pred --------------CCcChhHHhhhccEeecCC
Confidence 1255668899987777764
No 356
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.20 E-value=4.2e-10 Score=129.67 Aligned_cols=199 Identities=12% Similarity=0.084 Sum_probs=121.2
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHHhhcC-CCC--CCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEe---
Q psy2887 379 LLNIENLLCKRVVGQDEAISAVSNAIRRSRSG-LSD--AKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRI--- 452 (899)
Q Consensus 379 l~~l~~~l~~~v~gq~~~~~~l~~~i~~~~~~-~~~--~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~--- 452 (899)
...+.+.+...++|++.++..+..++...... ... .-+...++||+|+||||||++|+++++.+.+ ..+...
T Consensus 194 ~~~l~~si~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r--~~~~~~~~~ 271 (509)
T smart00350 194 YERLSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPR--AVYTTGKGS 271 (509)
T ss_pred HHHHHHhhCccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCc--ceEcCCCCC
Confidence 45677788899999999988887766432110 000 1122238999999999999999999998722 122221
Q ss_pred cccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecC-CCceEe-cC
Q psy2887 453 DMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDN-RGRTIN-FR 530 (899)
Q Consensus 453 ~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~-~g~~~~-~~ 530 (899)
++..+... .+... ..|. ...-.+.+..+..++++|||++++++..|..|+++|+.++++.. .|.... ..
T Consensus 272 ~~~~l~~~----~~~~~---~~g~--~~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~ 342 (509)
T smart00350 272 SAVGLTAA----VTRDP---ETRE--FTLEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNA 342 (509)
T ss_pred CcCCcccc----ceEcc---Ccce--EEecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecC
Confidence 11111110 00000 0010 00011233445678999999999999999999999999887542 343333 35
Q ss_pred CeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEe-cCCCHHHHHHHHHHHHH
Q psy2887 531 NTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVF-RYLNRKNILSIANIQLN 599 (899)
Q Consensus 531 ~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f-~~l~~~~~~~i~~~~l~ 599 (899)
++.+|+|+|.-...+... ..+ .+ .-.+++.+++|||.++.. .+++.+.-.+|+.+.+.
T Consensus 343 ~~~viAa~NP~~g~y~~~-----~~~----~~--n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 343 RCSVLAAANPIGGRYDPK-----LTP----EE--NIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred CcEEEEEeCCCCcccCCC-----cCh----hh--ccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHH
Confidence 788999999532211100 000 00 114789999999986555 56777777778776654
No 357
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.19 E-value=2.5e-10 Score=134.05 Aligned_cols=199 Identities=13% Similarity=0.097 Sum_probs=122.8
Q ss_pred HHHHHHHHhhccCCChHHHHHHHHHHHHHhhcC------CC------CCCCCceEEEEecCCCChHHHHHHHHHHHhcc-
Q psy2887 378 KLLNIENLLCKRVVGQDEAISAVSNAIRRSRSG------LS------DAKRPYGSFMFLGPTGVGKTELCKTLSACIFN- 444 (899)
Q Consensus 378 ~l~~l~~~l~~~v~gq~~~~~~l~~~i~~~~~~------~~------~~~~~~~~ill~GppGtGKT~lA~~la~~l~~- 444 (899)
....+.+.+...|.|.+.+++.|..++-..... +. ...+...++||+|+||||||.+|+++++...+
T Consensus 440 i~~~L~~SiaP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~ 519 (915)
T PTZ00111 440 IYRILLDSFAPSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRS 519 (915)
T ss_pred HHHHHHHHhCCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCcc
Confidence 345567778889999999999997777433210 00 01123348999999999999999999997632
Q ss_pred ---CCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceec
Q psy2887 445 ---NEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTD 521 (899)
Q Consensus 445 ---~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~ 521 (899)
.+.++..+++...... .+... |. -..-.+++..+..++++|||++++++..|..|+++|+.++++.
T Consensus 520 ~ytsG~~~s~vgLTa~~~~------~d~~t---G~--~~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI 588 (915)
T PTZ00111 520 IYTSGKSSSSVGLTASIKF------NESDN---GR--AMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTI 588 (915)
T ss_pred ccCCCCCCccccccchhhh------ccccc---Cc--ccccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEE
Confidence 2245555555443210 00000 00 0001123445667899999999999999999999999988753
Q ss_pred C-CCce-EecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecC-CCHHHHHHHHHHHH
Q psy2887 522 N-RGRT-INFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRY-LNRKNILSIANIQL 598 (899)
Q Consensus 522 ~-~g~~-~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~-l~~~~~~~i~~~~l 598 (899)
. .|.. .-..++.||+|+|.-...+.... .+.. .-.|++.|++|||.++...+ ++++.=..|+.+.+
T Consensus 589 ~KaGi~~tL~ar~rVIAAaNP~~gryd~~~-----s~~e------ni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 589 AKAGIVATLKAETAILASCNPINSRYNKNK-----AVIE------NINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred ecCCcceecCCCeEEEEEcCCcccccCccc-----Cccc------ccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHH
Confidence 3 2332 23468889999996322111100 0000 12478999999998665555 45444445555544
No 358
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=5.5e-10 Score=130.83 Aligned_cols=170 Identities=21% Similarity=0.219 Sum_probs=119.0
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCcc---------------CCCeEEEEehhhhhcCcccCchHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSL---------------LSKKILLLDIALLLAGTKYRGEFEDRLKKIL 77 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l---------------~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~ 77 (899)
...+||+||+|+|||++|+++|+.+......... .+..++.++.. ...+ ...++++.
T Consensus 38 ~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~------~~~~--vd~ir~ii 109 (585)
T PRK14950 38 AHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAA------SHTS--VDDAREII 109 (585)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEecc------ccCC--HHHHHHHH
Confidence 3446999999999999999999988431110000 01123333321 1111 22355655
Q ss_pred HHHHh---cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhccccccc
Q psy2887 78 KEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILV 152 (899)
Q Consensus 78 ~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l 152 (899)
+.+.. .....|+||||+|.|.. ...+.|+..++. ...++|++++... .+.+.+++|+..+.|
T Consensus 110 ~~~~~~p~~~~~kVvIIDEa~~L~~--------~a~naLLk~LEepp~~tv~Il~t~~~~-----kll~tI~SR~~~i~f 176 (585)
T PRK14950 110 ERVQFRPALARYKVYIIDEVHMLST--------AAFNALLKTLEEPPPHAIFILATTEVH-----KVPATILSRCQRFDF 176 (585)
T ss_pred HHHhhCcccCCeEEEEEeChHhCCH--------HHHHHHHHHHhcCCCCeEEEEEeCChh-----hhhHHHHhccceeeC
Confidence 54432 23356999999999853 567788888876 4677777777665 577889999999999
Q ss_pred cCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHH
Q psy2887 153 EEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAA 213 (899)
Q Consensus 153 ~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~ 213 (899)
..++..+...+++.++.+ .++.++++++..++..+.+.+. .++..++..+.
T Consensus 177 ~~l~~~el~~~L~~~a~~----egl~i~~eal~~La~~s~Gdlr------~al~~LekL~~ 227 (585)
T PRK14950 177 HRHSVADMAAHLRKIAAA----EGINLEPGALEAIARAATGSMR------DAENLLQQLAT 227 (585)
T ss_pred CCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCHH------HHHHHHHHHHH
Confidence 999999999999887765 5778999999999999877554 77777776554
No 359
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=3e-10 Score=123.86 Aligned_cols=220 Identities=19% Similarity=0.219 Sum_probs=146.9
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCC-Cc-eEEecccccccccchh-
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNE-ES-IIRIDMSEFIEKHSIS- 464 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~-~~-~~~~~~~~~~~~~~~~- 464 (899)
+.+.+.+..++++...+.....+. .|. +++++||||||||.+++.+.+.+.... .. ++++||..+.....+.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~----~p~-n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~ 91 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGE----RPS-NIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLS 91 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCC----CCc-cEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHH
Confidence 446678888888888877655442 333 699999999999999999999994432 22 7999999887764432
Q ss_pred ---hccCCCCCccccccc---chhhHHHHhC-CCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEe
Q psy2887 465 ---RLIGAPPGYIGYEEG---GYLTEIVRRK-PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMT 537 (899)
Q Consensus 465 ---~l~g~~~~~~g~~~~---~~l~~~~~~~-~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 537 (899)
.-++..| ..|.... ..+.+.+... ..-||+|||+|.+...-.+.|+.++.-..- ...++.+|+.
T Consensus 92 ~i~~~~~~~p-~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~--------~~~~v~vi~i 162 (366)
T COG1474 92 KILNKLGKVP-LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGE--------NKVKVSIIAV 162 (366)
T ss_pred HHHHHcCCCC-CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccc--------cceeEEEEEE
Confidence 2222222 2333332 3344444443 345999999998887655666666654211 1355678888
Q ss_pred cCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccC-eEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecH
Q psy2887 538 SNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRID-DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISK 616 (899)
Q Consensus 538 sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~-~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 616 (899)
+|... +...+.|.+.+++. ..|.|+|++.+++.+|+....+.. -..-.+++
T Consensus 163 ~n~~~---------------------~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~-------~~~~~~~~ 214 (366)
T COG1474 163 SNDDK---------------------FLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEG-------FSAGVIDD 214 (366)
T ss_pred eccHH---------------------HHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhh-------ccCCCcCc
Confidence 88421 13446677777774 479999999999999988776431 22357889
Q ss_pred HHHHHHHhcccCcccccccccccHHHHHHHHHHhhc
Q psy2887 617 AALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHK 652 (899)
Q Consensus 617 ~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l~~~~~ 652 (899)
+++++++...... -||.+...+.|+...+.+..
T Consensus 215 ~vl~lia~~~a~~---~GDAR~aidilr~A~eiAe~ 247 (366)
T COG1474 215 DVLKLIAALVAAE---SGDARKAIDILRRAGEIAER 247 (366)
T ss_pred cHHHHHHHHHHHc---CccHHHHHHHHHHHHHHHHh
Confidence 9999988633211 24888888888888766654
No 360
>PRK09087 hypothetical protein; Validated
Probab=99.18 E-value=1.3e-10 Score=118.83 Aligned_cols=152 Identities=14% Similarity=0.167 Sum_probs=102.3
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 499 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 499 (899)
.++|+||+|+|||+|++++++.. +.. .++...+... +...+. .++|+||++
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~---~~~--~i~~~~~~~~---------------------~~~~~~---~~~l~iDDi 96 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKS---DAL--LIHPNEIGSD---------------------AANAAA---EGPVLIEDI 96 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhc---CCE--EecHHHcchH---------------------HHHhhh---cCeEEEECC
Confidence 49999999999999999998765 322 3333222111 111111 258999999
Q ss_pred cccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccC--
Q psy2887 500 EKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRID-- 577 (899)
Q Consensus 500 d~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~-- 577 (899)
+.+.. .+..|+.+++.- .-.+..+|+|++..+..+.. +.|+|.+||.
T Consensus 97 ~~~~~-~~~~lf~l~n~~----------~~~g~~ilits~~~p~~~~~--------------------~~~dL~SRl~~g 145 (226)
T PRK09087 97 DAGGF-DETGLFHLINSV----------RQAGTSLLMTSRLWPSSWNV--------------------KLPDLKSRLKAA 145 (226)
T ss_pred CCCCC-CHHHHHHHHHHH----------HhCCCeEEEECCCChHHhcc--------------------ccccHHHHHhCC
Confidence 97742 345566666531 11345688888877764422 4678999995
Q ss_pred eEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCcccccccccccHHHHHHH
Q psy2887 578 DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSIL 646 (899)
Q Consensus 578 ~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~ 646 (899)
.++.+.+++.+++.+++++.++. .+ +.++++++++|++.. -|++......+.++
T Consensus 146 l~~~l~~pd~e~~~~iL~~~~~~-------~~--~~l~~ev~~~La~~~------~r~~~~l~~~l~~L 199 (226)
T PRK09087 146 TVVEIGEPDDALLSQVIFKLFAD-------RQ--LYVDPHVVYYLVSRM------ERSLFAAQTIVDRL 199 (226)
T ss_pred ceeecCCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHHh------hhhHHHHHHHHHHH
Confidence 69999999999999998888744 33 789999999999833 25555543334443
No 361
>KOG1969|consensus
Probab=99.18 E-value=2.8e-10 Score=127.01 Aligned_cols=177 Identities=15% Similarity=0.209 Sum_probs=124.6
Q ss_pred CCCCCCccCCCCCCCe-EEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHH
Q psy2887 1 MFHNHTKENFYFTSNP-VLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKE 79 (899)
Q Consensus 1 ~~~~~~~~~~~~~~~i-LL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~ 79 (899)
|+++.+.+.+|++..| ||+||||.||||||+.+|+.. |+.+++++.+.--++ ....+++..++..
T Consensus 313 ~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHViAkqa----------GYsVvEINASDeRt~----~~v~~kI~~avq~ 378 (877)
T KOG1969|consen 313 VLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIAKQA----------GYSVVEINASDERTA----PMVKEKIENAVQN 378 (877)
T ss_pred hhhcccCccCCCccceEEeecCCCCChhHHHHHHHHhc----------CceEEEecccccccH----HHHHHHHHHHHhh
Confidence 5677777777777766 568999999999999999999 999999987654322 2233334333332
Q ss_pred HH---hcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--------------------C---ceEEEEecChhHH
Q psy2887 80 IS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--------------------G---ELHCIGATTLNEY 133 (899)
Q Consensus 80 ~~---~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--------------------~---~v~vI~at~~~~~ 133 (899)
-. ....|.+|+|||||--. ..+.++++.++.. . .-.||+.||..
T Consensus 379 ~s~l~adsrP~CLViDEIDGa~--------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL-- 448 (877)
T KOG1969|consen 379 HSVLDADSRPVCLVIDEIDGAP--------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL-- 448 (877)
T ss_pred ccccccCCCcceEEEecccCCc--------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--
Confidence 11 12569999999999643 2455666666620 0 12467777754
Q ss_pred HHhhhcCHHHHh-c-cc-cccccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHH
Q psy2887 134 RQYIEKDAAFER-R-FQ-KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDE 210 (899)
Q Consensus 134 ~~~~~ld~al~~-R-f~-~i~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~ 210 (899)
-.|+|+- | |. +|.|.+|+..-.++-|+.++.. .++.++..++..+.+++...+. ..++-|..
T Consensus 449 -----YaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~r----E~mr~d~~aL~~L~el~~~DIR------sCINtLQf 513 (877)
T KOG1969|consen 449 -----YAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHR----ENMRADSKALNALCELTQNDIR------SCINTLQF 513 (877)
T ss_pred -----cchhhhhcccceEEEEecCCChhHHHHHHHHHHhh----hcCCCCHHHHHHHHHHhcchHH------HHHHHHHH
Confidence 2577766 2 33 4889999998888888877765 7888999999999999988776 55666666
Q ss_pred HHHhhh
Q psy2887 211 AAAKIK 216 (899)
Q Consensus 211 a~~~~~ 216 (899)
.+....
T Consensus 514 La~~~~ 519 (877)
T KOG1969|consen 514 LASNVD 519 (877)
T ss_pred HHHhcc
Confidence 655544
No 362
>KOG0990|consensus
Probab=99.17 E-value=4.4e-11 Score=121.50 Aligned_cols=191 Identities=18% Similarity=0.208 Sum_probs=132.0
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccC-CCc--eEEecccccccccchh
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN-EES--IIRIDMSEFIEKHSIS 464 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~-~~~--~~~~~~~~~~~~~~~~ 464 (899)
.+++++++.+..+.+.... ++-| ++|||||||||||+...+.|..+++. +.. +...+.++-.+
T Consensus 41 ~dv~~~~ei~st~~~~~~~-------~~lP--h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rg----- 106 (360)
T KOG0990|consen 41 GIVIKQEPIWSTENRYSGM-------PGLP--HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRG----- 106 (360)
T ss_pred hhHhcCCchhhHHHHhccC-------CCCC--cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccC-----
Confidence 5677888888777766322 2233 79999999999999999999999652 111 11111111100
Q ss_pred hccCCCCCccccc-ccchhhHHHH-------hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEE
Q psy2887 465 RLIGAPPGYIGYE-EGGYLTEIVR-------RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVM 536 (899)
Q Consensus 465 ~l~g~~~~~~g~~-~~~~l~~~~~-------~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ 536 (899)
++.. +.-+++...+ .+.+..+++||+|.+..++||+|.++++. ...++.|++
T Consensus 107 ---------id~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek-----------~t~n~rF~i 166 (360)
T KOG0990|consen 107 ---------IDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEK-----------YTANTRFAT 166 (360)
T ss_pred ---------CcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHH-----------hccceEEEE
Confidence 0000 0112233332 23678999999999999999999998886 346777888
Q ss_pred ecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecH
Q psy2887 537 TSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISK 616 (899)
Q Consensus 537 tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 616 (899)
.+|.... ..|.+++|| ..++|.|++..+....+.+.++. .....++
T Consensus 167 i~n~~~k------------------------i~pa~qsRc-trfrf~pl~~~~~~~r~shi~e~---------e~~~~~~ 212 (360)
T KOG0990|consen 167 ISNPPQK------------------------IHPAQQSRC-TRFRFAPLTMAQQTERQSHIRES---------EQKETNP 212 (360)
T ss_pred eccChhh------------------------cCchhhccc-ccCCCCCCChhhhhhHHHHHHhc---------chhhcCH
Confidence 8886443 678899999 79999999999988887766621 2356777
Q ss_pred HHHHHHHhcccCcccccccccccHHHHHHHHHHhhc
Q psy2887 617 AALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHK 652 (899)
Q Consensus 617 ~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l~~~~~ 652 (899)
+....+.. ...||+|..++-|+....+.+-
T Consensus 213 ~~~~a~~r------~s~gDmr~a~n~Lqs~~~~~~~ 242 (360)
T KOG0990|consen 213 EGYSALGR------LSVGDMRVALNYLQSILKKVME 242 (360)
T ss_pred HHHHHHHH------HhHHHHHHHHHHHHHHHHHhCC
Confidence 77777666 4479999998888888766554
No 363
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.17 E-value=1.5e-10 Score=141.41 Aligned_cols=178 Identities=20% Similarity=0.283 Sum_probs=118.7
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhcc-------CCCceEEecccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFN-------NEESIIRIDMSEFIEK 460 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~-------~~~~~~~~~~~~~~~~ 460 (899)
..++|+++.++.+...+.+.. ..+++|+||||||||++|+.+|..+.. .+.+++.++++.+...
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~---------~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~ 243 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT---------KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAG 243 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC---------CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhc
Confidence 568999999888888876532 236899999999999999999998743 2455666665544321
Q ss_pred cchhhccCCCCCccccccc--chhhHHHHh-CCCEEEEEccccccCH--------HHHHHHHHhhcCCceecCCCceEec
Q psy2887 461 HSISRLIGAPPGYIGYEEG--GYLTEIVRR-KPYSLILLDEIEKANS--------DVFNILLQILDDGRLTDNRGRTINF 529 (899)
Q Consensus 461 ~~~~~l~g~~~~~~g~~~~--~~l~~~~~~-~~~~vl~lDEid~~~~--------~~~~~Ll~~le~g~~~~~~g~~~~~ 529 (899)
..|.|..+. +.++..+.. ..+.|||||||+.+.. ++.+.|...++.|
T Consensus 244 ----------~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g------------ 301 (852)
T TIGR03346 244 ----------AKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG------------ 301 (852)
T ss_pred ----------chhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC------------
Confidence 114443332 233333433 3468999999997752 4677777777654
Q ss_pred CCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhh--cCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHh
Q psy2887 530 RNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKI--YFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLK 607 (899)
Q Consensus 530 ~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~ 607 (899)
...+|.+||...- +. ..+++|.+|| ..|.+..++.++...|+.....++..
T Consensus 302 -~i~~IgaTt~~e~---------------------r~~~~~d~al~rRf-~~i~v~~p~~~~~~~iL~~~~~~~e~---- 354 (852)
T TIGR03346 302 -ELHCIGATTLDEY---------------------RKYIEKDAALERRF-QPVFVDEPTVEDTISILRGLKERYEV---- 354 (852)
T ss_pred -ceEEEEeCcHHHH---------------------HHHhhcCHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHHhcc----
Confidence 4557888884221 11 2478899999 56889999999999987665444322
Q ss_pred cCcceeecHHHHHHHHh
Q psy2887 608 MNMDLKISKAALKKISN 624 (899)
Q Consensus 608 ~~~~~~~~~~~~~~L~~ 624 (899)
...+.++++++..++.
T Consensus 355 -~~~v~~~d~~i~~~~~ 370 (852)
T TIGR03346 355 -HHGVRITDPAIVAAAT 370 (852)
T ss_pred -ccCCCCCHHHHHHHHH
Confidence 1235566777666664
No 364
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.16 E-value=1.4e-09 Score=117.99 Aligned_cols=163 Identities=16% Similarity=0.286 Sum_probs=111.0
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCc----hHHHHHHHHHHHHHhcCCCE
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRG----EFEDRLKKILKEISNNQKDI 87 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g----~~~~~l~~~~~~~~~~~~~~ 87 (899)
..+.++|+||.|+|||+|++++++...... | +..++.+...... ..++- .....+++.. . --
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~-~----~a~v~y~~se~f~--~~~v~a~~~~~~~~Fk~~y-~------~d 177 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANG-P----NARVVYLTSEDFT--NDFVKALRDNEMEKFKEKY-S------LD 177 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhC-C----CceEEeccHHHHH--HHHHHHHHhhhHHHHHHhh-c------cC
Confidence 466789999999999999999999885542 1 4456655543332 11111 1111222222 2 22
Q ss_pred EEEEccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhcccc---ccccCCCHHHHHHHH
Q psy2887 88 IIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQK---ILVEEPDIEETISIL 164 (899)
Q Consensus 88 iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~---i~l~~p~~~e~~~il 164 (899)
+|+||+++.+..+.. ...+....+....+.++-+++.+..+|. ..-.+.|.|.+||.. +.+.+|+.+.+.+||
T Consensus 178 lllIDDiq~l~gk~~--~qeefFh~FN~l~~~~kqIvltsdr~P~--~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL 253 (408)
T COG0593 178 LLLIDDIQFLAGKER--TQEEFFHTFNALLENGKQIVLTSDRPPK--ELNGLEDRLRSRLEWGLVVEIEPPDDETRLAIL 253 (408)
T ss_pred eeeechHhHhcCChh--HHHHHHHHHHHHHhcCCEEEEEcCCCch--hhccccHHHHHHHhceeEEeeCCCCHHHHHHHH
Confidence 899999999976532 2345667777777887755554444443 123467999999973 889999999999999
Q ss_pred HhhhhhhhcccCCCCCHHHHHHHHhhhhhhcc
Q psy2887 165 RGLQKKYEVHHGVEITDPAIVAASELSYRYIS 196 (899)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (899)
+...+. .++.++++++..++....+.+.
T Consensus 254 ~kka~~----~~~~i~~ev~~~la~~~~~nvR 281 (408)
T COG0593 254 RKKAED----RGIEIPDEVLEFLAKRLDRNVR 281 (408)
T ss_pred HHHHHh----cCCCCCHHHHHHHHHHhhccHH
Confidence 986654 7889999999999888766443
No 365
>KOG2035|consensus
Probab=99.16 E-value=1.1e-09 Score=108.79 Aligned_cols=178 Identities=19% Similarity=0.247 Sum_probs=127.5
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCc-cC--------CC--eEEEEehh-hhhcCcccCch-HHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNS-LL--------SK--KILLLDIA-LLLAGTKYRGE-FEDRLKKILKE 79 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~-l~--------~~--~~~~~~~~-~l~~~~~~~g~-~~~~l~~~~~~ 79 (899)
-+|+++|||+|+||-|.+.++.+++.-.+++.. +. +. .+-.+... .+.-..+..|. -.-.+++++++
T Consensus 34 ~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKe 113 (351)
T KOG2035|consen 34 FPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKE 113 (351)
T ss_pred CCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHH
Confidence 369999999999999999999999875443311 00 11 11111000 00000112232 23346777777
Q ss_pred HHhc--------CCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhcccc
Q psy2887 80 ISNN--------QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQK 149 (899)
Q Consensus 80 ~~~~--------~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~ 149 (899)
+.+. ..-.|++|-|+|.|.. +++.+|...||. +...+|..+|+.. .+-+++++|+-.
T Consensus 114 vAQt~qie~~~qr~fKvvvi~ead~LT~--------dAQ~aLRRTMEkYs~~~RlIl~cns~S-----riIepIrSRCl~ 180 (351)
T KOG2035|consen 114 VAQTQQIETQGQRPFKVVVINEADELTR--------DAQHALRRTMEKYSSNCRLILVCNSTS-----RIIEPIRSRCLF 180 (351)
T ss_pred HHhhcchhhccccceEEEEEechHhhhH--------HHHHHHHHHHHHHhcCceEEEEecCcc-----cchhHHhhheeE
Confidence 6532 1235999999999965 777889999984 6788888888877 788999999988
Q ss_pred ccccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHH
Q psy2887 150 ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAA 213 (899)
Q Consensus 150 i~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~ 213 (899)
|.++.|+++|...++...+++ .++.++.+.+..+++-+.|.+. +|+-+++.++.
T Consensus 181 iRvpaps~eeI~~vl~~v~~k----E~l~lp~~~l~rIa~kS~~nLR------rAllmlE~~~~ 234 (351)
T KOG2035|consen 181 IRVPAPSDEEITSVLSKVLKK----EGLQLPKELLKRIAEKSNRNLR------RALLMLEAVRV 234 (351)
T ss_pred EeCCCCCHHHHHHHHHHHHHH----hcccCcHHHHHHHHHHhcccHH------HHHHHHHHHHh
Confidence 999999999999999999887 6788999999999999988776 66666655543
No 366
>KOG1969|consensus
Probab=99.14 E-value=5.3e-10 Score=124.83 Aligned_cols=169 Identities=18% Similarity=0.343 Sum_probs=116.4
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHH-------hCCCE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVR-------RKPYS 492 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~-------~~~~~ 492 (899)
.+||+||||-||||||+.+|+.. |..++.+|.++-.....+.. .+..++. ...|.
T Consensus 328 ilLL~GppGlGKTTLAHViAkqa---GYsVvEINASDeRt~~~v~~---------------kI~~avq~~s~l~adsrP~ 389 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAHVIAKQA---GYSVVEINASDERTAPMVKE---------------KIENAVQNHSVLDADSRPV 389 (877)
T ss_pred eEEeecCCCCChhHHHHHHHHhc---CceEEEecccccccHHHHHH---------------HHHHHHhhccccccCCCcc
Confidence 58899999999999999999999 99999999988655433321 1222221 13467
Q ss_pred EEEEccccccCHHHHHHHHHhhcC--CceecCCCce--------EecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHH
Q psy2887 493 LILLDEIEKANSDVFNILLQILDD--GRLTDNRGRT--------INFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMN 562 (899)
Q Consensus 493 vl~lDEid~~~~~~~~~Ll~~le~--g~~~~~~g~~--------~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~ 562 (899)
+|++||||-.++.+++.++.++.. ...+-..+.. ...-..-||+.||.-
T Consensus 390 CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--------------------- 448 (877)
T KOG1969|consen 390 CLVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--------------------- 448 (877)
T ss_pred eEEEecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc---------------------
Confidence 999999999999999999999983 2222111110 011112377888831
Q ss_pred HHhhcCChhHh--hccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCcccccccccccH
Q psy2887 563 EVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCK 640 (899)
Q Consensus 563 ~l~~~~~~~l~--~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~ 640 (899)
|-|.|. .-+-.++.|.|++..-+. +++...+..++ +.++..++..|.+ +...||+.|.
T Consensus 449 -----YaPaLR~Lr~~A~ii~f~~p~~s~Lv-------~RL~~IC~rE~--mr~d~~aL~~L~e------l~~~DIRsCI 508 (877)
T KOG1969|consen 449 -----YAPALRPLRPFAEIIAFVPPSQSRLV-------ERLNEICHREN--MRADSKALNALCE------LTQNDIRSCI 508 (877)
T ss_pred -----cchhhhhcccceEEEEecCCChhHHH-------HHHHHHHhhhc--CCCCHHHHHHHHH------HhcchHHHHH
Confidence 233332 344479999999988876 34444555566 7788899999988 5578999997
Q ss_pred HHHHHHH
Q psy2887 641 KSLSILL 647 (899)
Q Consensus 641 ~~l~~~l 647 (899)
..|+=+-
T Consensus 509 NtLQfLa 515 (877)
T KOG1969|consen 509 NTLQFLA 515 (877)
T ss_pred HHHHHHH
Confidence 7777554
No 367
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.14 E-value=6.1e-10 Score=120.10 Aligned_cols=157 Identities=18% Similarity=0.196 Sum_probs=108.5
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCcc---------------CCCeEEEEehhhhhcCcccCchHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSL---------------LSKKILLLDIALLLAGTKYRGEFEDRLKK 75 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l---------------~~~~~~~~~~~~l~~~~~~~g~~~~~l~~ 75 (899)
+....+||+||+|+|||++|+.+|+.+.... |... ...+++.+.... +++ .-..+.+++
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~-~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~---~~~--~i~id~iR~ 93 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEA-PQGGGACGSCKGCQLLRAGSHPDNFVLEPEE---ADK--TIKVDQVRE 93 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHhcCCCCCEEEEeccC---CCC--CCCHHHHHH
Confidence 4444588999999999999999999985421 1100 111333332210 001 112346777
Q ss_pred HHHHHHh---cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhccccc
Q psy2887 76 ILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKI 150 (899)
Q Consensus 76 ~~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i 150 (899)
+.+.+.. .++.-|++||++|.|.. ++.|.|+..||. +.+++|.+|+.++ .+.|.++|||..+
T Consensus 94 l~~~~~~~~~~~~~kv~iI~~a~~m~~--------~aaNaLLK~LEEPp~~~~fiL~t~~~~-----~ll~TI~SRc~~~ 160 (328)
T PRK05707 94 LVSFVVQTAQLGGRKVVLIEPAEAMNR--------NAANALLKSLEEPSGDTVLLLISHQPS-----RLLPTIKSRCQQQ 160 (328)
T ss_pred HHHHHhhccccCCCeEEEECChhhCCH--------HHHHHHHHHHhCCCCCeEEEEEECChh-----hCcHHHHhhceee
Confidence 7766652 23456899999999964 788999999986 5788999999888 7899999999999
Q ss_pred cccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhh
Q psy2887 151 LVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRY 194 (899)
Q Consensus 151 ~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (899)
.|++|+.++..++|..... ..+++....++.++.+.
T Consensus 161 ~~~~~~~~~~~~~L~~~~~--------~~~~~~~~~~l~la~Gs 196 (328)
T PRK05707 161 ACPLPSNEESLQWLQQALP--------ESDERERIELLTLAGGS 196 (328)
T ss_pred eCCCcCHHHHHHHHHHhcc--------cCChHHHHHHHHHcCCC
Confidence 9999999999888864321 13444555566666553
No 368
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.13 E-value=8.6e-10 Score=129.25 Aligned_cols=180 Identities=20% Similarity=0.218 Sum_probs=110.9
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCc-----ccCchHH----HHHHHHHHHH--
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGT-----KYRGEFE----DRLKKILKEI-- 80 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~-----~~~g~~~----~~l~~~~~~~-- 80 (899)
...+++|+|||||||||+|+++++..........-.+.+++.+++..+.... ...|... ...+..+...
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl 253 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGV 253 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCC
Confidence 3457999999999999999999887632211111124567777765432100 0111110 0111111110
Q ss_pred -------HhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC------------------------------CceE
Q psy2887 81 -------SNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR------------------------------GELH 123 (899)
Q Consensus 81 -------~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~------------------------------~~v~ 123 (899)
.....+++|||||++.|.. ...+.|...++. ..++
T Consensus 254 ~~~~~g~v~~asgGvL~LDEi~~Ld~--------~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~V 325 (615)
T TIGR02903 254 PEPKTGLVTDAHGGVLFIDEIGELDP--------LLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFV 325 (615)
T ss_pred CchhcCchhhcCCCeEEEeccccCCH--------HHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEE
Confidence 0011245999999998854 333445544432 2367
Q ss_pred EEEecChhHHHHhhhcCHHHHhccccccccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchh
Q psy2887 124 CIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDK 203 (899)
Q Consensus 124 vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 203 (899)
+|++|+.... .++++|++||..+.|++++.++...|++..+.+ .++.+++++++.++..+.. ..+
T Consensus 326 LI~aTt~~~~----~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~----~~v~ls~eal~~L~~ys~~-------gRr 390 (615)
T TIGR02903 326 LIGATTRDPE----EINPALRSRCAEVFFEPLTPEDIALIVLNAAEK----INVHLAAGVEELIARYTIE-------GRK 390 (615)
T ss_pred EEEecccccc----ccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHCCCc-------HHH
Confidence 7777665431 689999999998999999999999999988775 3567889988888776531 135
Q ss_pred HHHHHHHHHHh
Q psy2887 204 AIDLIDEAAAK 214 (899)
Q Consensus 204 ~~~ll~~a~~~ 214 (899)
+++.+..+...
T Consensus 391 aln~L~~~~~~ 401 (615)
T TIGR02903 391 AVNILADVYGY 401 (615)
T ss_pred HHHHHHHHHHH
Confidence 66666555433
No 369
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.13 E-value=1.4e-09 Score=106.18 Aligned_cols=176 Identities=20% Similarity=0.275 Sum_probs=126.7
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhcc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 467 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (899)
..++|-+..++.+.+.-++...| .|..++||+|..|||||++.|++...+...+..++.++-.++..-
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G-----~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~L------- 127 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEG-----LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATL------- 127 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcC-----CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhhH-------
Confidence 45679999999988877777666 455689999999999999999999999888889998887776442
Q ss_pred CCCCCcccccccchhhHHHHhCCCE-EEEEccccc-cCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChh--
Q psy2887 468 GAPPGYIGYEEGGYLTEIVRRKPYS-LILLDEIEK-ANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSD-- 543 (899)
Q Consensus 468 g~~~~~~g~~~~~~l~~~~~~~~~~-vl~lDEid~-~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~-- 543 (899)
..+.+.++..+.. |||+|+.-- -+......|-.+||.|.- -...|++|-+|||...-
T Consensus 128 ------------p~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve-------~rP~NVl~YATSNRRHLl~ 188 (287)
T COG2607 128 ------------PDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVE-------GRPANVLFYATSNRRHLLP 188 (287)
T ss_pred ------------HHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcc-------cCCCeEEEEEecCCccccc
Confidence 1356677777766 889998853 334567788888886532 24579999999996432
Q ss_pred -hhhhhhcCc-HHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHH
Q psy2887 544 -KIKEMEKGD-KEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNI 600 (899)
Q Consensus 544 -~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~ 600 (899)
.+.+..+.. ..-..+.+.+.++ |-+||..-+.|.|.+.++..+|++.+.++
T Consensus 189 e~~~dn~~~~~eih~~eaveEKlS------lSDRFGLwL~F~~~~Q~~YL~~V~~~a~~ 241 (287)
T COG2607 189 EDMKDNEGSTGEIHPSEAVEEKLS------LSDRFGLWLSFYPCDQDEYLKIVDHYAKH 241 (287)
T ss_pred HhhhhCCCcccccChhHHHHHhhc------hhhhcceeecccCCCHHHHHHHHHHHHHH
Confidence 121111111 0001222222222 77999999999999999999999988844
No 370
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.11 E-value=5e-10 Score=126.13 Aligned_cols=185 Identities=13% Similarity=0.188 Sum_probs=114.5
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccc---hh
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHS---IS 464 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~---~~ 464 (899)
..++||..+++.+..++... .+++|.||||+|||++++.++..+...... ..+++..+.+-.. ..
T Consensus 191 ~~v~Gq~~~~~al~laa~~G-----------~~llliG~~GsGKTtLak~L~gllpp~~g~-e~le~~~i~s~~g~~~~~ 258 (506)
T PRK09862 191 SDVIGQEQGKRGLEITAAGG-----------HNLLLIGPPGTGKTMLASRINGLLPDLSNE-EALESAAILSLVNAESVQ 258 (506)
T ss_pred EEEECcHHHHhhhheeccCC-----------cEEEEECCCCCcHHHHHHHHhccCCCCCCc-EEEecchhhhhhcccccc
Confidence 46779988887765444321 279999999999999999999887332221 1222222211000 00
Q ss_pred -hc----cCCCC------CcccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecC--CCceEecCC
Q psy2887 465 -RL----IGAPP------GYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDN--RGRTINFRN 531 (899)
Q Consensus 465 -~l----~g~~~------~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~--~g~~~~~~~ 531 (899)
.+ |-++. +.+|... ..-...+..+.++||||||++.+++.+++.|++.||+|.++.. .+......+
T Consensus 259 ~~~~~rPfr~ph~~~s~~~l~GGg~-~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~ 337 (506)
T PRK09862 259 KQWRQRPFRSPHHSASLTAMVGGGA-IPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPAR 337 (506)
T ss_pred CCcCCCCccCCCccchHHHHhCCCc-eehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCC
Confidence 00 00000 0112111 1123456777789999999999999999999999999988632 233334578
Q ss_pred eEEEEecCCChhhhhhh--hcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHH
Q psy2887 532 TIIVMTSNLGSDKIKEM--EKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNI 590 (899)
Q Consensus 532 ~~iI~tsn~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~ 590 (899)
+.+|+|+|..+...... |.-.+....+ ....++..+++|||..+.+++++.+++
T Consensus 338 f~lIAa~NP~pcG~~~~~~c~c~~~~~~~-----Y~~~ls~plLDRfdL~v~v~~~~~~~l 393 (506)
T PRK09862 338 FQLVAAMNPSPTGHYQGNHNRCTPEQTLR-----YLNRLSGPFLDRFDLSLEIPLPPPGIL 393 (506)
T ss_pred EEEEEeecCccceecCCCCCCcCHHHHHH-----HHhhCCHhHHhhccEEEEeCCCCHHHH
Confidence 89999999754211110 1112223332 256789999999999999999876543
No 371
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=4.5e-10 Score=129.95 Aligned_cols=167 Identities=20% Similarity=0.222 Sum_probs=121.0
Q ss_pred cCCCCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhh----------cCcccCchHHHHHHHHH
Q psy2887 8 ENFYFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLL----------AGTKYRGEFEDRLKKIL 77 (899)
Q Consensus 8 ~~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~----------~~~~~~g~~~~~l~~~~ 77 (899)
.++++-++.||.||+|+|||.||++||..+... ...++.+|++... +...|+|--+ ...+
T Consensus 516 dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~-------e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyee---GG~L 585 (786)
T COG0542 516 DPNRPIGSFLFLGPTGVGKTELAKALAEALFGD-------EQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEE---GGQL 585 (786)
T ss_pred CCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC-------CccceeechHHHHHHHHHHHHhCCCCCCceecc---ccch
Confidence 455666789999999999999999999998543 3567888887663 2234565433 3344
Q ss_pred HHHHhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC-------------ceEEEEecChhHHH----------
Q psy2887 78 KEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCIGATTLNEYR---------- 134 (899)
Q Consensus 78 ~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~-------------~v~vI~at~~~~~~---------- 134 (899)
.++.+....+|+++||++.--+ ++.|.|++.|+.| +.++|.|+|-....
T Consensus 586 TEaVRr~PySViLlDEIEKAHp--------dV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~ 657 (786)
T COG0542 586 TEAVRRKPYSVILLDEIEKAHP--------DVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDF 657 (786)
T ss_pred hHhhhcCCCeEEEechhhhcCH--------HHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhcccccc
Confidence 4555556689999999998765 8999999999654 46788888743110
Q ss_pred -------H------hhhcCHHHHhccc-cccccCCCHHHHHHHHHhhhhhhhc-----ccCCCCCHHHHHHHHhhhh
Q psy2887 135 -------Q------YIEKDAAFERRFQ-KILVEEPDIEETISILRGLQKKYEV-----HHGVEITDPAIVAASELSY 192 (899)
Q Consensus 135 -------~------~~~ld~al~~Rf~-~i~l~~p~~~e~~~il~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 192 (899)
. .-...|.|+.|++ +|.|.+.+.++..+|+...+++... ...+.+++++...+++.+.
T Consensus 658 ~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gy 734 (786)
T COG0542 658 ADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGY 734 (786)
T ss_pred chhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhcc
Confidence 0 0123688999998 6999999999999998776655431 3345789999998887753
No 372
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.11 E-value=8.8e-10 Score=119.91 Aligned_cols=176 Identities=19% Similarity=0.160 Sum_probs=113.0
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCC----CCCccC----CC------------eEEEEehhhhhcCcc-cCchH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGE----VPNSLL----SK------------KILLLDIALLLAGTK-YRGEF 69 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~----~p~~l~----~~------------~~~~~~~~~l~~~~~-~~g~~ 69 (899)
+.+..+||+||+|+||||+|+.+|+.+.... .|..+. .+ .++.+....-..+.+ ...-.
T Consensus 43 rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~ 122 (351)
T PRK09112 43 KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAIT 122 (351)
T ss_pred CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCC
Confidence 3344589999999999999999999986521 121111 01 111111000000000 01111
Q ss_pred HHHHHHHHHHHH---hcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC--ceEEEEecChhHHHHhhhcCHHHH
Q psy2887 70 EDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG--ELHCIGATTLNEYRQYIEKDAAFE 144 (899)
Q Consensus 70 ~~~l~~~~~~~~---~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~--~v~vI~at~~~~~~~~~~ld~al~ 144 (899)
.+.++++.+.+. ..++..|++|||+|.|.. .+.|.|+..+|+. ..++|..|+.+. .+.|.++
T Consensus 123 vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~--------~aanaLLk~LEEpp~~~~fiLit~~~~-----~llptIr 189 (351)
T PRK09112 123 VDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR--------NAANAILKTLEEPPARALFILISHSSG-----RLLPTIR 189 (351)
T ss_pred HHHHHHHHHHhhhccccCCceEEEEEchhhcCH--------HHHHHHHHHHhcCCCCceEEEEECChh-----hccHHHH
Confidence 234555444433 234567999999999954 6778899999863 466666667666 6789999
Q ss_pred hccccccccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHH
Q psy2887 145 RRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEA 211 (899)
Q Consensus 145 ~Rf~~i~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a 211 (899)
+||..+.|++|+.++..++|+..... ..++++++..++.++.|. |..++.++...
T Consensus 190 SRc~~i~l~pl~~~~~~~~L~~~~~~------~~~~~~~~~~i~~~s~G~------pr~Al~ll~~~ 244 (351)
T PRK09112 190 SRCQPISLKPLDDDELKKALSHLGSS------QGSDGEITEALLQRSKGS------VRKALLLLNYG 244 (351)
T ss_pred hhccEEEecCCCHHHHHHHHHHhhcc------cCCCHHHHHHHHHHcCCC------HHHHHHHHhcC
Confidence 99998999999999999999863211 127788888888887664 44777776543
No 373
>KOG0741|consensus
Probab=99.10 E-value=6.1e-11 Score=127.13 Aligned_cols=137 Identities=21% Similarity=0.380 Sum_probs=101.7
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCccccccc--chhhHHHHh--------C
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEG--GYLTEIVRR--------K 489 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~--------~ 489 (899)
.+|||||||||||.+||.|...|..+.. -.+|++++.++ |+|+++. +.||.-+++ +
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLNAreP--KIVNGPeIL~K------------YVGeSE~NvR~LFaDAEeE~r~~g~~S 323 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLNAREP--KIVNGPEILNK------------YVGESEENVRKLFADAEEEQRRLGANS 323 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhcCCCC--cccCcHHHHHH------------hhcccHHHHHHHHHhHHHHHHhhCccC
Confidence 5999999999999999999999954433 34688998877 8888887 556554432 1
Q ss_pred CCEEEEEcccccc-------------CHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHH
Q psy2887 490 PYSLILLDEIEKA-------------NSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEII 556 (899)
Q Consensus 490 ~~~vl~lDEid~~-------------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~ 556 (899)
.--||+|||||.+ +..+.|.||.-||.-. ...|.++|--||...
T Consensus 324 gLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVe---------qLNNILVIGMTNR~D-------------- 380 (744)
T KOG0741|consen 324 GLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVE---------QLNNILVIGMTNRKD-------------- 380 (744)
T ss_pred CceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHH---------hhhcEEEEeccCchh--------------
Confidence 1249999999844 4579999999998511 357888888888522
Q ss_pred HHHHHHHHhhcCChhHh--hccCeEEEecCCCHHHHHHHHHHHHHHHHH
Q psy2887 557 KLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQLNILKN 603 (899)
Q Consensus 557 ~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~ 603 (899)
.++.+|+ +||...+.+.-|++.-..+|++-+-+++++
T Consensus 381 ----------lIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre 419 (744)
T KOG0741|consen 381 ----------LIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRE 419 (744)
T ss_pred ----------hHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhh
Confidence 1223333 799888999999999999988777665543
No 374
>PRK12377 putative replication protein; Provisional
Probab=99.10 E-value=3e-10 Score=116.93 Aligned_cols=108 Identities=22% Similarity=0.380 Sum_probs=75.7
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 499 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 499 (899)
+++|+||||||||+||.+|++.+...+.+++.+..+++....... +........+...+. ...+|+|||+
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~--------~~~~~~~~~~l~~l~--~~dLLiIDDl 172 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHES--------YDNGQSGEKFLQELC--KVDLLVLDEI 172 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHH--------HhccchHHHHHHHhc--CCCEEEEcCC
Confidence 699999999999999999999998778888888887766532211 100001112333333 3459999999
Q ss_pred --cccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhh
Q psy2887 500 --EKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKE 547 (899)
Q Consensus 500 --d~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~ 547 (899)
+...+..++.|+++++... -...-+|+|||...+.+.+
T Consensus 173 g~~~~s~~~~~~l~~ii~~R~----------~~~~ptiitSNl~~~~l~~ 212 (248)
T PRK12377 173 GIQRETKNEQVVLNQIIDRRT----------ASMRSVGMLTNLNHEAMST 212 (248)
T ss_pred CCCCCCHHHHHHHHHHHHHHH----------hcCCCEEEEcCCCHHHHHH
Confidence 5667888999999999632 1234478999998876544
No 375
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.10 E-value=2.1e-10 Score=130.24 Aligned_cols=67 Identities=21% Similarity=0.234 Sum_probs=55.6
Q ss_pred ecChhHHHHhhhcCHHHHhccccccccCCC---HHHHHHHHHhhhhhhhc-----ccCCCCCHHHHHHHHhhhhh
Q psy2887 127 ATTLNEYRQYIEKDAAFERRFQKILVEEPD---IEETISILRGLQKKYEV-----HHGVEITDPAIVAASELSYR 193 (899)
Q Consensus 127 at~~~~~~~~~~ld~al~~Rf~~i~l~~p~---~~e~~~il~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 193 (899)
.+-+..++..+.+-.+|....+.+.+++|| +.+.+.||+.++..++. +|+..|-+.+...++.+..+
T Consensus 152 ~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g 226 (530)
T COG0488 152 SSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRG 226 (530)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCC
Confidence 345667888888999999999999999998 68889999999988773 77778888888888877665
No 376
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.10 E-value=1.4e-09 Score=112.53 Aligned_cols=199 Identities=17% Similarity=0.214 Sum_probs=129.6
Q ss_pred CCCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhc------------Cccc--CchHHHHHHH
Q psy2887 10 FYFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA------------GTKY--RGEFEDRLKK 75 (899)
Q Consensus 10 ~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~------------~~~~--~g~~~~~l~~ 75 (899)
+.+..|+||+|++|.|||++++.++.......-+ .-...+++.+.+..-.+ |..+ .....+....
T Consensus 58 ~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~-~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~ 136 (302)
T PF05621_consen 58 RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDE-DAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQ 136 (302)
T ss_pred ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCC-CCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHH
Confidence 3455689999999999999999999865432211 12234676665432111 1111 1122222222
Q ss_pred HHHHHHhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhccccccccCC
Q psy2887 76 ILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEP 155 (899)
Q Consensus 76 ~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p 155 (899)
++.-+. .-+.-+|+|||+|.+.... ........|.|+.+-..-.+.+|+.++..-+. .+.-|+.+.+||..+.++..
T Consensus 137 ~~~llr-~~~vrmLIIDE~H~lLaGs-~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~-al~~D~QLa~RF~~~~Lp~W 213 (302)
T PF05621_consen 137 VLRLLR-RLGVRMLIIDEFHNLLAGS-YRKQREFLNALKFLGNELQIPIVGVGTREAYR-ALRTDPQLASRFEPFELPRW 213 (302)
T ss_pred HHHHHH-HcCCcEEEeechHHHhccc-HHHHHHHHHHHHHHhhccCCCeEEeccHHHHH-HhccCHHHHhccCCccCCCC
Confidence 222222 2346699999999987533 22345677888877777788888988887755 57789999999999888877
Q ss_pred CH-HHHHHHHHhhhhhhhcccCCCCCH-HHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhhhh
Q psy2887 156 DI-EETISILRGLQKKYEVHHGVEITD-PAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIE 218 (899)
Q Consensus 156 ~~-~e~~~il~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~~~ 218 (899)
.. ++-..++..+-..++......+.+ +....+...|.|.++ ...+++..|+..+..+
T Consensus 214 ~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG------~l~~ll~~aA~~AI~s 272 (302)
T PF05621_consen 214 ELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG------ELSRLLNAAAIAAIRS 272 (302)
T ss_pred CCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH------HHHHHHHHHHHHHHhc
Confidence 53 445556666666655444334444 556789999999887 8888888887665533
No 377
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.9e-09 Score=117.75 Aligned_cols=191 Identities=19% Similarity=0.229 Sum_probs=129.1
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcC-------------cccCch-HHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG-------------TKYRGE-FEDRLKKI 76 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~-------------~~~~g~-~~~~l~~~ 76 (899)
..+.|++++|+||||||++++.+++++..... +..++.++|...... ....|. ..+.++.+
T Consensus 40 ~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~-----~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l 114 (366)
T COG1474 40 ERPSNIIIYGPTGTGKTATVKFVMEELEESSA-----NVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRL 114 (366)
T ss_pred CCCccEEEECCCCCCHhHHHHHHHHHHHhhhc-----cCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHH
Confidence 44557999999999999999999999854311 222566766443211 011121 23344455
Q ss_pred HHHHHhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhc--CCceEEEEecChhHHHHhhhcCHHHHhcccc--ccc
Q psy2887 77 LKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS--RGELHCIGATTLNEYRQYIEKDAAFERRFQK--ILV 152 (899)
Q Consensus 77 ~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~--~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~--i~l 152 (899)
.+.........|+++||+|.|..... +..-.|..... ...+.+|+.+|...+. ..++|.+.++|.. |.|
T Consensus 115 ~~~~~~~~~~~IvvLDEid~L~~~~~-----~~LY~L~r~~~~~~~~v~vi~i~n~~~~~--~~ld~rv~s~l~~~~I~F 187 (366)
T COG1474 115 YDNLSKKGKTVIVILDEVDALVDKDG-----EVLYSLLRAPGENKVKVSIIAVSNDDKFL--DYLDPRVKSSLGPSEIVF 187 (366)
T ss_pred HHHHHhcCCeEEEEEcchhhhccccc-----hHHHHHHhhccccceeEEEEEEeccHHHH--HHhhhhhhhccCcceeee
Confidence 55555556788999999999987542 22222222222 3457889999988763 3679999999974 889
Q ss_pred cCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhhhh
Q psy2887 153 EEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIE 218 (899)
Q Consensus 153 ~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~~~ 218 (899)
++++.+|...|++.-.+.. ...-.+++.+++.++..+....+ -...+++++..|+..+..+
T Consensus 188 ~pY~a~el~~Il~~R~~~~--~~~~~~~~~vl~lia~~~a~~~G---DAR~aidilr~A~eiAe~~ 248 (366)
T COG1474 188 PPYTAEELYDILRERVEEG--FSAGVIDDDVLKLIAALVAAESG---DARKAIDILRRAGEIAERE 248 (366)
T ss_pred CCCCHHHHHHHHHHHHHhh--ccCCCcCccHHHHHHHHHHHcCc---cHHHHHHHHHHHHHHHHhh
Confidence 9999999999998766542 23346888999888877766543 2347888888888766543
No 378
>PRK08116 hypothetical protein; Validated
Probab=99.07 E-value=1.4e-09 Score=114.26 Aligned_cols=143 Identities=17% Similarity=0.290 Sum_probs=92.2
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 499 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 499 (899)
+++|+|+||||||+||.++++.+...+.+++.++.+++....... +... +......+...+.. ..+|+|||+
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~--~~~~----~~~~~~~~~~~l~~--~dlLviDDl 187 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKST--YKSS----GKEDENEIIRSLVN--ADLLILDDL 187 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH--Hhcc----ccccHHHHHHHhcC--CCEEEEecc
Confidence 599999999999999999999997778888888887765431111 1100 00001123333333 359999999
Q ss_pred --cccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhcc-
Q psy2887 500 --EKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRI- 576 (899)
Q Consensus 500 --d~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~- 576 (899)
++..+..+..|+.+|+... ..+..+|+|||..+..+.. .+...+++|+
T Consensus 188 g~e~~t~~~~~~l~~iin~r~----------~~~~~~IiTsN~~~~eL~~-------------------~~~~ri~sRl~ 238 (268)
T PRK08116 188 GAERDTEWAREKVYNIIDSRY----------RKGLPTIVTTNLSLEELKN-------------------QYGKRIYDRIL 238 (268)
T ss_pred cCCCCCHHHHHHHHHHHHHHH----------HCCCCEEEECCCCHHHHHH-------------------HHhHHHHHHHH
Confidence 6678888999999998621 1334589999998875543 2345567775
Q ss_pred --CeEEEecCCCHHHHHHHHHHHHHHH
Q psy2887 577 --DDIIVFRYLNRKNILSIANIQLNIL 601 (899)
Q Consensus 577 --~~~i~f~~l~~~~~~~i~~~~l~~~ 601 (899)
...|.|...+ -...+.+..+..+
T Consensus 239 e~~~~v~~~g~d--~R~~~~~ek~~~~ 263 (268)
T PRK08116 239 EMCTPVENEGKS--YRKEIAKEKLQRL 263 (268)
T ss_pred HcCEEEEeeCcC--hhHHHHHHHHHHH
Confidence 2456665544 2444544444433
No 379
>KOG0372|consensus
Probab=99.07 E-value=3e-10 Score=109.90 Aligned_cols=117 Identities=23% Similarity=0.379 Sum_probs=82.7
Q ss_pred CcccccccccccHHHHHHHHHHhhccCCccceeeccccCCCCceEehhHHHHHhcC----CccEEEccCChHhHHhHhhh
Q psy2887 628 DLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMR----NYAKIVLGNHEIHLLDVLIN 703 (899)
Q Consensus 628 ~~~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~~~~l~~~~----~~~~~v~GNHe~~~l~~~~~ 703 (899)
+|...+|||||.+..|..++ +++-..+..+.+|+||+||||-.|+++.-+|..++ ++++.+|||||...+.-..+
T Consensus 43 tPvtvcGDIHGQf~Dllelf-~igG~~~~t~YLFLGDyVDRG~~SvEt~lLLl~lK~rYP~ritLiRGNHEsRqitqvYG 121 (303)
T KOG0372|consen 43 TPVTVCGDIHGQFYDLLELF-RIGGDVPETNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYG 121 (303)
T ss_pred CCcEEeecccchHHHHHHHH-HhCCCCCCCceEeecchhccccchHHHHHHHHHHhhcCcceeEEeeccchhhhhhhhhh
Confidence 46677899999966666665 34446678899999999999999999998887763 57999999999876543322
Q ss_pred c----ccCchhchHHHhhCCcChHHHHHHHhcCCce-EEeCCEEEEecccccccc
Q psy2887 704 I----NKKSKLDTFDDILDAPDKKKLVSWLRTQPLA-IYYKKYLMIHAGVAKQWT 753 (899)
Q Consensus 704 ~----~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~-~~~~~~~~vHAg~~~~~~ 753 (899)
. ....+..... ...-+-+.-||+. +..++++.||||+.|..+
T Consensus 122 FY~EclrKYG~~~vW--------r~c~eiFdyL~l~aiid~kifCVHGGlSP~i~ 168 (303)
T KOG0372|consen 122 FYDECLRKYGSANVW--------RYCTEIFDYLSLAAIIDGKIFCVHGGLSPSIQ 168 (303)
T ss_pred HHHHHHHHcCChHHH--------HHHHHHHHhhhHhheecCcEEEEcCCCCcchh
Confidence 2 1222222222 2233445555655 456799999999999765
No 380
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.06 E-value=2.2e-10 Score=111.63 Aligned_cols=111 Identities=20% Similarity=0.300 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHH-cCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHH---hcCCC
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRII-NGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKD 86 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~-~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~---~~~~~ 86 (899)
|+..++||+||+|||||.+|+++|+.+. .. ..+++.+|++.+..+.. ....+..++.... .....
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~-------~~~~~~~d~s~~~~~~~----~~~~~~~l~~~~~~~v~~~~~ 69 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGS-------ERPLIRIDMSEYSEGDD----VESSVSKLLGSPPGYVGAEEG 69 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SS-------CCEEEEEEGGGHCSHHH----CSCHCHHHHHHTTCHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCC-------ccchHHHhhhcccccch----HHhhhhhhhhcccceeeccch
Confidence 4567999999999999999999999993 12 45899999988764111 0111222222111 01112
Q ss_pred EEEEEccccccccCCCC---CchhhHHHhhhhhhcC-------------CceEEEEecChhH
Q psy2887 87 IIIFIDELHTMIGTGKV---EGSIDAGNMLKPELSR-------------GELHCIGATTLNE 132 (899)
Q Consensus 87 ~iL~iDEi~~l~~~~~~---~~~~~~~~~l~~~l~~-------------~~v~vI~at~~~~ 132 (899)
.|+|+||+|.+.+.... .....+.+.|+++++. .++++|+|+|...
T Consensus 70 gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 70 GVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp TEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred hhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 39999999999874211 1224577888988853 3578999998765
No 381
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.05 E-value=1.2e-08 Score=112.71 Aligned_cols=198 Identities=14% Similarity=0.076 Sum_probs=104.2
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchH-HHHH--HHHHHHHH-h-cCC
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEF-EDRL--KKILKEIS-N-NQK 85 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~-~~~l--~~~~~~~~-~-~~~ 85 (899)
....|+||.||||||||++|++++....... .+....+.-. ......|.. -... ..-|.... . ...
T Consensus 37 lag~hVLL~GpPGTGKT~LAraLa~~~~~~~--------~F~~~~~~ft-tp~DLfG~l~i~~~~~~g~f~r~~~G~L~~ 107 (498)
T PRK13531 37 LSGESVFLLGPPGIAKSLIARRLKFAFQNAR--------AFEYLMTRFS-TPEEVFGPLSIQALKDEGRYQRLTSGYLPE 107 (498)
T ss_pred ccCCCEEEECCCChhHHHHHHHHHHHhcccC--------cceeeeeeec-CcHHhcCcHHHhhhhhcCchhhhcCCcccc
Confidence 3567999999999999999999999763221 1111111100 001111211 0000 01111111 0 001
Q ss_pred CEEEEEccccccccCCCCCchhhHHHhhhhhhcCCc------------eEEEEecChhHHHHhhhcCHHHHhcccc-ccc
Q psy2887 86 DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGE------------LHCIGATTLNEYRQYIEKDAAFERRFQK-ILV 152 (899)
Q Consensus 86 ~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~~------------v~vI~at~~~~~~~~~~ld~al~~Rf~~-i~l 152 (899)
..+||+||+..+.+ ...+.|+..|+.+. ..+++|||+.+- .-...+++..||.. +.+
T Consensus 108 A~lLfLDEI~rasp--------~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE--~g~~leAL~DRFliri~v 177 (498)
T PRK13531 108 AEIVFLDEIWKAGP--------AILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPE--ADSSLEALYDRMLIRLWL 177 (498)
T ss_pred ccEEeecccccCCH--------HHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcc--cCCchHHhHhhEEEEEEC
Confidence 22899999997754 56678888884321 245566664330 11233589999964 889
Q ss_pred cCCC-HHHHHHHHHhhhhh--h-----------------hcccCCCCCHHHHHHHHhhhhhhc--c--cCCCchhHHHHH
Q psy2887 153 EEPD-IEETISILRGLQKK--Y-----------------EVHHGVEITDPAIVAASELSYRYI--S--DRFMPDKAIDLI 208 (899)
Q Consensus 153 ~~p~-~~e~~~il~~~~~~--~-----------------~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~p~~~~~ll 208 (899)
++|+ .++-.+++...... . ..-..+.+++.+.+++.++....- . ...-|...+.++
T Consensus 178 p~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~ 257 (498)
T PRK13531 178 DKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAI 257 (498)
T ss_pred CCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHH
Confidence 9997 45557777542110 0 012446777777777777764211 1 112344555555
Q ss_pred HHHHHhh--hhhhcCChhHHH
Q psy2887 209 DEAAAKI--KIEIDSKPEIMD 227 (899)
Q Consensus 209 ~~a~~~~--~~~~~~~~~~l~ 227 (899)
..+.+.+ .-+....|.++.
T Consensus 258 ~~akA~A~l~GR~~V~p~Dv~ 278 (498)
T PRK13531 258 RLLQASAFFSGRDAIAPIDLI 278 (498)
T ss_pred HHHHHHHHHCCCCCCCHHHHH
Confidence 4443333 334445555554
No 382
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.04 E-value=7.4e-11 Score=112.03 Aligned_cols=111 Identities=19% Similarity=0.328 Sum_probs=70.8
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHH-------HHHHHHHHHhcCCCE
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDR-------LKKILKEISNNQKDI 87 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~-------l~~~~~~~~~~~~~~ 87 (899)
||||+||||||||++|+.+|+.+ +.+++.+.++.........|..... -..+...+ ..+.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~----------~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~---~~~~ 67 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL----------GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM---RKGG 67 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH----------TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH---HEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh----------hcceEEEEeccccccccceeeeeecccccccccccccccc---ccee
Confidence 58999999999999999999999 7788877765533211111111000 00000011 1478
Q ss_pred EEEEccccccccCCCCCchhhHHHhhhhhhcC---------------C------ceEEEEecChhHHHHhhhcCHHHHhc
Q psy2887 88 IIFIDELHTMIGTGKVEGSIDAGNMLKPELSR---------------G------ELHCIGATTLNEYRQYIEKDAAFERR 146 (899)
Q Consensus 88 iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~---------------~------~v~vI~at~~~~~~~~~~ld~al~~R 146 (899)
|++|||++...+ ++.+.|.+.++. . .+.+|+|+|+.+ .....++++|++|
T Consensus 68 il~lDEin~a~~--------~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~-~~~~~l~~al~~R 138 (139)
T PF07728_consen 68 ILVLDEINRAPP--------EVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD-KGRKELSPALLDR 138 (139)
T ss_dssp EEEESSCGG--H--------HHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST---TTTTCHHHHTT
T ss_pred EEEECCcccCCH--------HHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC-CCcCcCCHHHHhh
Confidence 999999998743 566667666631 1 289999999987 5556899999999
Q ss_pred c
Q psy2887 147 F 147 (899)
Q Consensus 147 f 147 (899)
|
T Consensus 139 f 139 (139)
T PF07728_consen 139 F 139 (139)
T ss_dssp -
T ss_pred C
Confidence 8
No 383
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.04 E-value=6.3e-10 Score=121.70 Aligned_cols=137 Identities=23% Similarity=0.291 Sum_probs=96.9
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHH-HHHHHhcCCC----
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKI-LKEISNNQKD---- 86 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~-~~~~~~~~~~---- 86 (899)
...|+||.||||||||++|+.+|..+ +.+++.+.+..-...+...|...-..... .....-..+|
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l----------~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~ 111 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARAL----------GLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAA 111 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHh----------CCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccc
Confidence 56799999999999999999999999 78888888876554455555443222110 0000000111
Q ss_pred --EEEEEccccccccCCCCCchhhHHHhhhhhhcC--------------CceEEEEecChhHHHHhhhcCHHHHhccc-c
Q psy2887 87 --IIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--------------GELHCIGATTLNEYRQYIEKDAAFERRFQ-K 149 (899)
Q Consensus 87 --~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--------------~~v~vI~at~~~~~~~~~~ld~al~~Rf~-~ 149 (899)
+|+++|||....+ ...++|++.|+. ..+.+|+|+|+.++.....+++++++||. .
T Consensus 112 ~~~ill~DEInra~p--------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~ 183 (329)
T COG0714 112 VRVILLLDEINRAPP--------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLR 183 (329)
T ss_pred cceEEEEeccccCCH--------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEE
Confidence 3999999998764 667788888843 34678888898888777889999999995 5
Q ss_pred ccccCC-CHHHHHHHHHh
Q psy2887 150 ILVEEP-DIEETISILRG 166 (899)
Q Consensus 150 i~l~~p-~~~e~~~il~~ 166 (899)
+.++.| +..+...++..
T Consensus 184 ~~v~yp~~~~e~~~i~~~ 201 (329)
T COG0714 184 IYVDYPDSEEEERIILAR 201 (329)
T ss_pred EecCCCCchHHHHHHHHh
Confidence 889999 44444444443
No 384
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.04 E-value=4.8e-09 Score=110.33 Aligned_cols=96 Identities=23% Similarity=0.181 Sum_probs=66.5
Q ss_pred CEEEEEccccccccCCCCCchhhHHHhhhhhhcCC-ceEEEEecChhH-------HHHhhhcCHHHHhccccccccCCCH
Q psy2887 86 DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-ELHCIGATTLNE-------YRQYIEKDAAFERRFQKILVEEPDI 157 (899)
Q Consensus 86 ~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~-~v~vI~at~~~~-------~~~~~~ld~al~~Rf~~i~l~~p~~ 157 (899)
|+||||||+|.|- .+....|...+|.. ..++|.|||+.- +..-.-++..|+.|+-.|...+++.
T Consensus 279 pGVLFIDEvHmLD--------iEcFsfLnralEs~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~ 350 (398)
T PF06068_consen 279 PGVLFIDEVHMLD--------IECFSFLNRALESELSPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSE 350 (398)
T ss_dssp E-EEEEESGGGSB--------HHHHHHHHHHHTSTT--EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----H
T ss_pred cceEEecchhhcc--------HHHHHHHHHHhcCCCCcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCH
Confidence 7899999999983 36778899999864 567788888542 1222356789999998899999999
Q ss_pred HHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhh
Q psy2887 158 EETISILRGLQKKYEVHHGVEITDPAIVAASELSYR 193 (899)
Q Consensus 158 ~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (899)
+|..+|++.-++. .++.++++++..+.++...
T Consensus 351 ~ei~~Il~iR~~~----E~v~i~~~al~~L~~ig~~ 382 (398)
T PF06068_consen 351 EEIKQILKIRAKE----EDVEISEDALDLLTKIGVE 382 (398)
T ss_dssp HHHHHHHHHHHHH----CT--B-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh----hcCcCCHHHHHHHHHHhhh
Confidence 9999999877765 7899999999998877654
No 385
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.03 E-value=6.7e-09 Score=101.50 Aligned_cols=147 Identities=21% Similarity=0.318 Sum_probs=110.5
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
...+|+||+|..|||||+|++++-.+.... +.++++++-..+. .+-.+++.++......|||
T Consensus 83 ~pANnVLLwGaRGtGKSSLVKA~~~e~~~~-------glrLVEV~k~dl~-----------~Lp~l~~~Lr~~~~kFIlF 144 (287)
T COG2607 83 LPANNVLLWGARGTGKSSLVKALLNEYADE-------GLRLVEVDKEDLA-----------TLPDLVELLRARPEKFILF 144 (287)
T ss_pred CcccceEEecCCCCChHHHHHHHHHHHHhc-------CCeEEEEcHHHHh-----------hHHHHHHHHhcCCceEEEE
Confidence 456899999999999999999999988654 6678988877765 4778888888778899999
Q ss_pred EccccccccCCCCCchhhHHHhhhhhhcC------CceEEEEecChhHHHH-----h---h-hcCH--------HHHhcc
Q psy2887 91 IDELHTMIGTGKVEGSIDAGNMLKPELSR------GELHCIGATTLNEYRQ-----Y---I-EKDA--------AFERRF 147 (899)
Q Consensus 91 iDEi~~l~~~~~~~~~~~~~~~l~~~l~~------~~v~vI~at~~~~~~~-----~---~-~ld~--------al~~Rf 147 (899)
+|++. +.. +.+....|+..|+. .+|++.+|+|....-. . . ++++ +|..||
T Consensus 145 cDDLS--Fe~-----gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRF 217 (287)
T COG2607 145 CDDLS--FEE-----GDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRF 217 (287)
T ss_pred ecCCC--CCC-----CchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhc
Confidence 99886 322 24566788888863 3688888888643211 0 0 2222 466699
Q ss_pred cc-ccccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHH
Q psy2887 148 QK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVA 186 (899)
Q Consensus 148 ~~-i~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~ 186 (899)
.. +.|.+++.++-..|+..+.+. .++.++++.+..
T Consensus 218 GLwL~F~~~~Q~~YL~~V~~~a~~----~~l~~~~e~l~~ 253 (287)
T COG2607 218 GLWLSFYPCDQDEYLKIVDHYAKH----FGLDISDEELHA 253 (287)
T ss_pred ceeecccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHH
Confidence 97 999999999999999998876 566777665543
No 386
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.02 E-value=3.1e-09 Score=114.23 Aligned_cols=118 Identities=17% Similarity=0.210 Sum_probs=76.2
Q ss_pred CEEEEEccccccccCCCCCchhhHHHhhhhhhcCC---------------ceEEEEecChhHHHHhhhcCHHHHhcccc-
Q psy2887 86 DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG---------------ELHCIGATTLNEYRQYIEKDAAFERRFQK- 149 (899)
Q Consensus 86 ~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~---------------~v~vI~at~~~~~~~~~~ld~al~~Rf~~- 149 (899)
.++||+||++.+.+ ..++.|...|+.+ .+++|+++|+.+ ..+.+++..||..
T Consensus 129 ~GiL~lDEInrl~~--------~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e----~~l~~aLldRF~~~ 196 (334)
T PRK13407 129 RGYLYIDEVNLLED--------HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEE----GELRPQLLDRFGLS 196 (334)
T ss_pred CCeEEecChHhCCH--------HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCccc----CCCCHHHHhhcceE
Confidence 35999999999854 5566777777543 367888888754 2589999999985
Q ss_pred ccccCCCH-HHHHHHHHhhhhh------h-------------------hcccCCCCCHHHHHHHHhhhhhhcccCCCchh
Q psy2887 150 ILVEEPDI-EETISILRGLQKK------Y-------------------EVHHGVEITDPAIVAASELSYRYISDRFMPDK 203 (899)
Q Consensus 150 i~l~~p~~-~e~~~il~~~~~~------~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 203 (899)
+.+++|.. +++.+|++..... + ..-..+.++++++.++++++...-.+ -|..
T Consensus 197 v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~--s~Ra 274 (334)
T PRK13407 197 VEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSD--GLRG 274 (334)
T ss_pred EEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCC--CchH
Confidence 88888876 8888888653211 0 01133567777777777776553321 2333
Q ss_pred HHHHHHHHHHhhhh
Q psy2887 204 AIDLIDEAAAKIKI 217 (899)
Q Consensus 204 ~~~ll~~a~~~~~~ 217 (899)
.+.++..|.+.+.+
T Consensus 275 ~i~l~~aA~a~A~l 288 (334)
T PRK13407 275 ELTLLRAARALAAF 288 (334)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555544443
No 387
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.02 E-value=3.9e-09 Score=115.48 Aligned_cols=172 Identities=16% Similarity=0.197 Sum_probs=110.9
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCC---------cc---------------CCCeEEEEehhhhhcCccc-
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPN---------SL---------------LSKKILLLDIALLLAGTKY- 65 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~---------~l---------------~~~~~~~~~~~~l~~~~~~- 65 (899)
+.+..+||+||+|+||+++|.++|+.+....... .+ ....++.+....-..+.+.
T Consensus 39 rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~ 118 (365)
T PRK07471 39 RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLR 118 (365)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccCCCCeEEEeccccccccccc
Confidence 3344589999999999999999999986432100 00 0112222221110111000
Q ss_pred CchHHHHHHHHHHHHH---hcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC--ceEEEEecChhHHHHhhhcC
Q psy2887 66 RGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG--ELHCIGATTLNEYRQYIEKD 140 (899)
Q Consensus 66 ~g~~~~~l~~~~~~~~---~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~--~v~vI~at~~~~~~~~~~ld 140 (899)
..-....++++.+.+. ..+++.|++|||+|.+.. ...|.|+..+++. ..++|.+|+.++ .+.
T Consensus 119 ~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~--------~aanaLLK~LEepp~~~~~IL~t~~~~-----~ll 185 (365)
T PRK07471 119 TVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA--------NAANALLKVLEEPPARSLFLLVSHAPA-----RLL 185 (365)
T ss_pred ccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH--------HHHHHHHHHHhcCCCCeEEEEEECCch-----hch
Confidence 0112334666665544 235578999999999853 6788999999863 577788888877 678
Q ss_pred HHHHhccccccccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHH
Q psy2887 141 AAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLID 209 (899)
Q Consensus 141 ~al~~Rf~~i~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~ 209 (899)
+.+++||..+.|++|+.++..+++..... ...+..+..++.+++|.. ..+..+++
T Consensus 186 pti~SRc~~i~l~~l~~~~i~~~L~~~~~--------~~~~~~~~~l~~~s~Gsp------~~Al~ll~ 240 (365)
T PRK07471 186 PTIRSRCRKLRLRPLAPEDVIDALAAAGP--------DLPDDPRAALAALAEGSV------GRALRLAG 240 (365)
T ss_pred HHhhccceEEECCCCCHHHHHHHHHHhcc--------cCCHHHHHHHHHHcCCCH------HHHHHHhc
Confidence 99999999999999999999999875321 234444566777776643 35555543
No 388
>PHA02244 ATPase-like protein
Probab=99.02 E-value=1.4e-09 Score=115.69 Aligned_cols=125 Identities=21% Similarity=0.265 Sum_probs=82.0
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehh--hhh-cCc-ccCchHHHHHHHHHHHHHhcCCCE
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA--LLL-AGT-KYRGEFEDRLKKILKEISNNQKDI 87 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~--~l~-~~~-~~~g~~~~~l~~~~~~~~~~~~~~ 87 (899)
...+++|+||||||||++|+++|..+ +.+++.++.. .+. .|. ...|.+. -..++..+. .+.
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~l----------g~pfv~In~l~d~~~L~G~i~~~g~~~--dgpLl~A~~---~Gg 182 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEAL----------DLDFYFMNAIMDEFELKGFIDANGKFH--ETPFYEAFK---KGG 182 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEecChHHHhhccccccccccc--chHHHHHhh---cCC
Confidence 45589999999999999999999988 7777777531 110 010 0111111 112222222 356
Q ss_pred EEEEccccccccCCCCCchhhHHHhhhhhhc-------------CCceEEEEecChhH--H----HHhhhcCHHHHhccc
Q psy2887 88 IIFIDELHTMIGTGKVEGSIDAGNMLKPELS-------------RGELHCIGATTLNE--Y----RQYIEKDAAFERRFQ 148 (899)
Q Consensus 88 iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~-------------~~~v~vI~at~~~~--~----~~~~~ld~al~~Rf~ 148 (899)
+|+|||++.+.+ ++...|...++ ...+.+|+|+|+.. | ...-.+++++++||.
T Consensus 183 vLiLDEId~a~p--------~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv 254 (383)
T PHA02244 183 LFFIDEIDASIP--------EALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFA 254 (383)
T ss_pred EEEEeCcCcCCH--------HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcE
Confidence 999999998864 44445555553 25689999999842 1 112478999999998
Q ss_pred cccccCCCHHH
Q psy2887 149 KILVEEPDIEE 159 (899)
Q Consensus 149 ~i~l~~p~~~e 159 (899)
.|.++.|+..|
T Consensus 255 ~I~~dyp~~~E 265 (383)
T PHA02244 255 PIEFDYDEKIE 265 (383)
T ss_pred EeeCCCCcHHH
Confidence 89999998433
No 389
>KOG0374|consensus
Probab=99.01 E-value=1.9e-10 Score=122.10 Aligned_cols=121 Identities=23% Similarity=0.388 Sum_probs=92.4
Q ss_pred cccccccccccHHHHHHHHHHhhccCCccceeeccccCCCCceEehhHHHHHhcC----CccEEEccCChHhHHhHhhhc
Q psy2887 629 LIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMR----NYAKIVLGNHEIHLLDVLINI 704 (899)
Q Consensus 629 ~~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~~~~l~~~~----~~~~~v~GNHe~~~l~~~~~~ 704 (899)
+...+|||||.+..|.+++...+.-++....+|+|||||||+.+++++-++.+++ .+++.++||||.+-+....+.
T Consensus 60 PV~i~GDiHGq~~DLlrlf~~~g~~pp~~~ylFLGDYVDRG~~slE~i~LL~a~Ki~yp~~~~lLRGNHE~~~in~~yGF 139 (331)
T KOG0374|consen 60 PVKIVGDIHGQFGDLLRLFDLLGSFPPDQNYVFLGDYVDRGKQSLETICLLFALKIKYPENVFLLRGNHECASINRIYGF 139 (331)
T ss_pred CEEEEccCcCCHHHHHHHHHhcCCCCCcccEEEecccccCCccceEEeehhhhhhhhCCceEEEeccccccccccceeee
Confidence 6677899999999999999999933588999999999999999999999998874 579999999999877744432
Q ss_pred ccCchhchHHHhhCCcChHHHHHHHhcCCceEEe-CCEEEEecccccccc
Q psy2887 705 NKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIYY-KKYLMIHAGVAKQWT 753 (899)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~-~~~~~vHAg~~~~~~ 753 (899)
... -..++........+.+-+..||+.-.+ ++++++|||+.|.+.
T Consensus 140 ydE----~~rr~~~~~~w~~F~~~f~~mp~~a~i~~kI~CmhGGlsp~l~ 185 (331)
T KOG0374|consen 140 YDE----CKRRYGEIKLWKAFNDAFNCLPLAALIDGKILCMHGGLSPHLK 185 (331)
T ss_pred HHH----HHHhcchHHHHHHHHHHHhhCchhheecceEEEecCCCChhhc
Confidence 111 001111112235667778889987554 589999999999654
No 390
>KOG0990|consensus
Probab=99.01 E-value=1.9e-08 Score=102.65 Aligned_cols=172 Identities=14% Similarity=0.187 Sum_probs=121.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHh------cCCC
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN------NQKD 86 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~------~~~~ 86 (899)
-.|.|+|||||+|||+.+.+.|..+....-+ ...+.+++.++ ....+-.. .-...|..... ....
T Consensus 62 lPh~L~YgPPGtGktsti~a~a~~ly~~~~~----~~m~lelnaSd----~rgid~vr-~qi~~fast~~~~~fst~~~f 132 (360)
T KOG0990|consen 62 LPHLLFYGPPGTGKTSTILANARDFYSPHPT----TSMLLELNASD----DRGIDPVR-QQIHLFASTQQPTTYSTHAAF 132 (360)
T ss_pred CCcccccCCCCCCCCCchhhhhhhhcCCCCc----hhHHHHhhccC----ccCCcchH-HHHHHHHhhccceeccccCce
Confidence 3499999999999999999999988432100 11122222211 11122111 22233333331 1256
Q ss_pred EEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHHHHHHHH
Q psy2887 87 IIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISIL 164 (899)
Q Consensus 87 ~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~il 164 (899)
..+++||+|.+.. +++|+|...++. .++.|+..+|++. .+.|++++||+.+.|.+.+..+....+
T Consensus 133 KlvILDEADaMT~--------~AQnALRRviek~t~n~rF~ii~n~~~-----ki~pa~qsRctrfrf~pl~~~~~~~r~ 199 (360)
T KOG0990|consen 133 KLVILDEADAMTR--------DAQNALRRVIEKYTANTRFATISNPPQ-----KIHPAQQSRCTRFRFAPLTMAQQTERQ 199 (360)
T ss_pred eEEEecchhHhhH--------HHHHHHHHHHHHhccceEEEEeccChh-----hcCchhhcccccCCCCCCChhhhhhHH
Confidence 7999999999964 788899888864 4577778889888 899999999999999999999888888
Q ss_pred HhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhh
Q psy2887 165 RGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIK 216 (899)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~ 216 (899)
..+++. .....+++...+++.++.+... ++.+.++..+....
T Consensus 200 shi~e~----e~~~~~~~~~~a~~r~s~gDmr------~a~n~Lqs~~~~~~ 241 (360)
T KOG0990|consen 200 SHIRES----EQKETNPEGYSALGRLSVGDMR------VALNYLQSILKKVM 241 (360)
T ss_pred HHHHhc----chhhcCHHHHHHHHHHhHHHHH------HHHHHHHHHHHHhC
Confidence 888775 5567888888888888888766 77777776665543
No 391
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.01 E-value=9.7e-09 Score=105.82 Aligned_cols=96 Identities=22% Similarity=0.195 Sum_probs=75.9
Q ss_pred CEEEEEccccccccCCCCCchhhHHHhhhhhhcCC-ceEEEEecChhH-------HHHhhhcCHHHHhccccccccCCCH
Q psy2887 86 DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-ELHCIGATTLNE-------YRQYIEKDAAFERRFQKILVEEPDI 157 (899)
Q Consensus 86 ~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~-~v~vI~at~~~~-------~~~~~~ld~al~~Rf~~i~l~~p~~ 157 (899)
|+||||||+|.|- .+...+|...|+.. ..++|.|||..- +..-.-++..|+.|+-.|...+++.
T Consensus 292 pGVLFIDEvHmLD--------IE~FsFlnrAlEse~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~ 363 (450)
T COG1224 292 PGVLFIDEVHMLD--------IECFSFLNRALESELAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSR 363 (450)
T ss_pred cceEEEechhhhh--------HHHHHHHHHHhhcccCcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCH
Confidence 7899999999982 46777888888764 467777888642 1112357888999998899999999
Q ss_pred HHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhh
Q psy2887 158 EETISILRGLQKKYEVHHGVEITDPAIVAASELSYR 193 (899)
Q Consensus 158 ~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (899)
++..+|++.-.+. .++.+++++++.++.+...
T Consensus 364 ~EireIi~iRa~e----e~i~l~~~Ale~L~~ig~e 395 (450)
T COG1224 364 EEIREIIRIRAKE----EDIELSDDALEYLTDIGEE 395 (450)
T ss_pred HHHHHHHHHhhhh----hccccCHHHHHHHHhhchh
Confidence 9999999876665 6788999999999888644
No 392
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=2.8e-09 Score=111.15 Aligned_cols=143 Identities=15% Similarity=0.206 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccccc-ccchhhccCCC-C-C
Q psy2887 396 AISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE-KHSISRLIGAP-P-G 472 (899)
Q Consensus 396 ~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~-~~~~~~l~g~~-~-~ 472 (899)
+.+.+..++...+. .+.+||+||+|+||+++|.++|+.++....+- .|..+.. .|..-.++.+. . .
T Consensus 5 ~~~~L~~~i~~~rl--------~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~---~c~~~~~~~HPD~~~i~p~~~~~ 73 (290)
T PRK05917 5 AWEALIQRVRDQKV--------PSAIILHGQDLSNLSARAYELASLILKETSPE---AAYKISQKIHPDIHEFSPQGKGR 73 (290)
T ss_pred HHHHHHHHHHcCCc--------CeeEeeECCCCCcHHHHHHHHHHHHhCCCCcc---HHHHHhcCCCCCEEEEecCCCCC
Confidence 44566666665432 23799999999999999999999996532221 1111111 01111111111 1 1
Q ss_pred cccccccchhhHHHHhC----CCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhh
Q psy2887 473 YIGYEEGGYLTEIVRRK----PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEM 548 (899)
Q Consensus 473 ~~g~~~~~~l~~~~~~~----~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~ 548 (899)
.++.++.+.+...+... +..|++||++|++....+|.||+.||+ +..+++||+.|+....
T Consensus 74 ~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEE-----------Pp~~~~fiL~~~~~~~----- 137 (290)
T PRK05917 74 LHSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLED-----------PPQHGVIILTSAKPQR----- 137 (290)
T ss_pred cCcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhc-----------CCCCeEEEEEeCChhh-----
Confidence 23444445555555443 357999999999999999999999998 6788999988885433
Q ss_pred hcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCC
Q psy2887 549 EKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYL 585 (899)
Q Consensus 549 ~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l 585 (899)
+.|.++||| ..+.|+|+
T Consensus 138 -------------------ll~TI~SRc-q~~~~~~~ 154 (290)
T PRK05917 138 -------------------LPPTIRSRS-LSIHIPME 154 (290)
T ss_pred -------------------CcHHHHhcc-eEEEccch
Confidence 566789999 89999986
No 393
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.99 E-value=3.6e-09 Score=116.34 Aligned_cols=137 Identities=23% Similarity=0.251 Sum_probs=97.9
Q ss_pred CCCC-eEEEcCCCCcHHHHHHHHHHHHHcCCCCCcc--------------CCCeEEEEehhhhhcCcccCchHHHHHHHH
Q psy2887 12 FTSN-PVLIGEPGVGKTAIVEGLAQRIINGEVPNSL--------------LSKKILLLDIALLLAGTKYRGEFEDRLKKI 76 (899)
Q Consensus 12 ~~~~-iLL~GppGtGKTtla~~la~~l~~~~~p~~l--------------~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~ 76 (899)
...| +||+||||+|||++|.++|+.+......... ....+++++.+... ........++++
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~----~~~i~~~~vr~~ 97 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLR----KIDIIVEQVREL 97 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccC----CCcchHHHHHHH
Confidence 3445 9999999999999999999998643211110 12466666654432 111234456666
Q ss_pred HHHHHhc---CCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhcccccc
Q psy2887 77 LKEISNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKIL 151 (899)
Q Consensus 77 ~~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~ 151 (899)
.+..... ++.-|++|||+|.|.. ++.++++..++. ....+|.+||.+. .+-+.+++||..+.
T Consensus 98 ~~~~~~~~~~~~~kviiidead~mt~--------~A~nallk~lEep~~~~~~il~~n~~~-----~il~tI~SRc~~i~ 164 (325)
T COG0470 98 AEFLSESPLEGGYKVVIIDEADKLTE--------DAANALLKTLEEPPKNTRFILITNDPS-----KILPTIRSRCQRIR 164 (325)
T ss_pred HHHhccCCCCCCceEEEeCcHHHHhH--------HHHHHHHHHhccCCCCeEEEEEcCChh-----hccchhhhcceeee
Confidence 6655432 3457999999999975 788999999974 5788999999777 78889999999999
Q ss_pred ccCCCHHHHHHHHH
Q psy2887 152 VEEPDIEETISILR 165 (899)
Q Consensus 152 l~~p~~~e~~~il~ 165 (899)
|.+|+........+
T Consensus 165 f~~~~~~~~i~~~e 178 (325)
T COG0470 165 FKPPSRLEAIAWLE 178 (325)
T ss_pred cCCchHHHHHHHhh
Confidence 99977666655544
No 394
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.99 E-value=2e-09 Score=116.68 Aligned_cols=179 Identities=16% Similarity=0.211 Sum_probs=118.6
Q ss_pred CceEEEEecCCCChHHHHHHHHHHHhccCCC--ceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEE
Q psy2887 417 PYGSFMFLGPTGVGKTELCKTLSACIFNNEE--SIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLI 494 (899)
Q Consensus 417 ~~~~ill~GppGtGKT~lA~~la~~l~~~~~--~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl 494 (899)
+.++++||||+|.|||+|++++++.....+. .++.+....+.........- .....+.+.. .-.+|
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~---------~~~~~Fk~~y---~~dll 179 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRD---------NEMEKFKEKY---SLDLL 179 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHh---------hhHHHHHHhh---ccCee
Confidence 4457999999999999999999999855444 45555555554321111000 0001122222 33599
Q ss_pred EEccccccCH--HHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhH
Q psy2887 495 LLDEIEKANS--DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEF 572 (899)
Q Consensus 495 ~lDEid~~~~--~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 572 (899)
+||+|+.+.. ..+..|+.+++.- ...+..||+|+...+..+.. +.|.|
T Consensus 180 lIDDiq~l~gk~~~qeefFh~FN~l----------~~~~kqIvltsdr~P~~l~~--------------------~~~rL 229 (408)
T COG0593 180 LIDDIQFLAGKERTQEEFFHTFNAL----------LENGKQIVLTSDRPPKELNG--------------------LEDRL 229 (408)
T ss_pred eechHhHhcCChhHHHHHHHHHHHH----------HhcCCEEEEEcCCCchhhcc--------------------ccHHH
Confidence 9999998764 3466666666541 11233789999988876544 56789
Q ss_pred hhccC--eEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCcccccccccccHHHHHHHHHHh
Q psy2887 573 INRID--DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKI 650 (899)
Q Consensus 573 ~~R~~--~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l~~~ 650 (899)
.+||. .++...||+.+.+..|+.+.. ...+ +.+++++..+++.... -.++++.|. |.++....
T Consensus 230 ~SR~~~Gl~~~I~~Pd~e~r~aiL~kka-------~~~~--~~i~~ev~~~la~~~~---~nvReLega---L~~l~~~a 294 (408)
T COG0593 230 RSRLEWGLVVEIEPPDDETRLAILRKKA-------EDRG--IEIPDEVLEFLAKRLD---RNVRELEGA---LNRLDAFA 294 (408)
T ss_pred HHHHhceeEEeeCCCCHHHHHHHHHHHH-------HhcC--CCCCHHHHHHHHHHhh---ccHHHHHHH---HHHHHHHH
Confidence 99995 599999999999999987744 3334 8899999999998433 336777776 55555444
Q ss_pred hc
Q psy2887 651 HK 652 (899)
Q Consensus 651 ~~ 652 (899)
.+
T Consensus 295 ~~ 296 (408)
T COG0593 295 LF 296 (408)
T ss_pred Hh
Confidence 44
No 395
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.98 E-value=5.1e-09 Score=111.79 Aligned_cols=179 Identities=18% Similarity=0.301 Sum_probs=114.4
Q ss_pred HhhccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccch-
Q psy2887 385 LLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSI- 463 (899)
Q Consensus 385 ~l~~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~- 463 (899)
.+..-++||+..+..|........ .+.+|+.|+.||||||++|+||..|-. --+...|.--.+....
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P~---------iggvLI~G~kGtaKSt~~Rala~LLp~---~~~V~gc~f~cdP~~P~ 81 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDPQ---------IGGALIAGEKGTAKSTLARALADLLPE---IEVVIGCPFNCDPDDPE 81 (423)
T ss_pred cchhhhcCchHHHHHHhhhhcccc---------cceeEEecCCCccHHHHHHHHHHhCCc---cceecCCCCCCCCCChh
Confidence 344678899998888765532222 246999999999999999999999921 1111122100000000
Q ss_pred ----------------------hhccCCCCCc-----ccccc-------c--chhhHHHHhCCCEEEEEccccccCHHHH
Q psy2887 464 ----------------------SRLIGAPPGY-----IGYEE-------G--GYLTEIVRRKPYSLILLDEIEKANSDVF 507 (899)
Q Consensus 464 ----------------------~~l~g~~~~~-----~g~~~-------~--~~l~~~~~~~~~~vl~lDEid~~~~~~~ 507 (899)
..+++.+.+. +|.-. + ..-...+.++..+||++||+..++..++
T Consensus 82 ~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lv 161 (423)
T COG1239 82 EMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLV 161 (423)
T ss_pred hhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHH
Confidence 0122222111 11000 1 0112344556678999999999999999
Q ss_pred HHHHHhhcCC-ceecCCCceEec-CCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCC
Q psy2887 508 NILLQILDDG-RLTDNRGRTINF-RNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYL 585 (899)
Q Consensus 508 ~~Ll~~le~g-~~~~~~g~~~~~-~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l 585 (899)
+.||.++++| ......|..+.. .+.++|.|.|.. .+.++|.|++||...|...++
T Consensus 162 d~LLd~aaeG~n~vereGisi~hpa~fvligTmNPE-----------------------eGeLrpqLlDRfg~~v~~~~~ 218 (423)
T COG1239 162 DALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPE-----------------------EGELRPQLLDRFGLEVDTHYP 218 (423)
T ss_pred HHHHHHHHhCCceeeeCceeeccCccEEEEeecCcc-----------------------ccccchhhHhhhcceeeccCC
Confidence 9999999998 344455665543 677788888853 345889999999888877776
Q ss_pred CH-HHHHHHHHHHH
Q psy2887 586 NR-KNILSIANIQL 598 (899)
Q Consensus 586 ~~-~~~~~i~~~~l 598 (899)
+. ++..+|+.+.+
T Consensus 219 ~~~~~rv~Ii~r~~ 232 (423)
T COG1239 219 LDLEERVEIIRRRL 232 (423)
T ss_pred CCHHHHHHHHHHHH
Confidence 54 77777877666
No 396
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.98 E-value=4.4e-09 Score=110.19 Aligned_cols=156 Identities=14% Similarity=0.227 Sum_probs=103.3
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCc--eEEecccc---ccc-ccchhh
Q psy2887 392 GQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES--IIRIDMSE---FIE-KHSISR 465 (899)
Q Consensus 392 gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~--~~~~~~~~---~~~-~~~~~~ 465 (899)
.|..+++.+..++...+.. +.+||+|| +||+++|+.+|+.++..+.. --+-.|.. +.. .|..-.
T Consensus 6 ~q~~~~~~L~~~~~~~rl~--------hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~ 75 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLN--------HAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVT 75 (290)
T ss_pred HHHHHHHHHHHHHHcCCcc--------eeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCee
Confidence 5788889999988865422 36999996 68999999999999643310 00111111 111 111111
Q ss_pred ccCCCCCcccccccchhhHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCC
Q psy2887 466 LIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLG 541 (899)
Q Consensus 466 l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~ 541 (899)
.+.+....++.++.+.+...+.. ++..|++||++|++++...|.||+.||+ +..+++||++|+..
T Consensus 76 ~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEE-----------Pp~~t~~iL~t~~~ 144 (290)
T PRK07276 76 VIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEE-----------PQSEIYIFLLTNDE 144 (290)
T ss_pred eecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcC-----------CCCCeEEEEEECCh
Confidence 22221112333344555444443 3457999999999999999999999998 66789999988864
Q ss_pred hhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHH
Q psy2887 542 SDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIA 594 (899)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~ 594 (899)
.. +.|-+.||| .+++|++ +.+++.+++
T Consensus 145 ~~------------------------lLpTI~SRc-q~i~f~~-~~~~~~~~L 171 (290)
T PRK07276 145 NK------------------------VLPTIKSRT-QIFHFPK-NEAYLIQLL 171 (290)
T ss_pred hh------------------------CchHHHHcc-eeeeCCC-cHHHHHHHH
Confidence 43 556699999 8999977 666665554
No 397
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.98 E-value=1.5e-09 Score=97.07 Aligned_cols=68 Identities=24% Similarity=0.437 Sum_probs=58.9
Q ss_pred HHHHHHHHhhccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCC
Q psy2887 378 KLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE 447 (899)
Q Consensus 378 ~l~~l~~~l~~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~ 447 (899)
.+..|+..|.+.++||..|.+.+..++...... ..|++|. .+.|+||||||||.+++.||+.+|..+.
T Consensus 15 ~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~-~~p~KpL-VlSfHG~tGtGKn~v~~liA~~ly~~G~ 82 (127)
T PF06309_consen 15 NITGLEKDLQRNLFGQHLAVEVVVNAIKGHLAN-PNPRKPL-VLSFHGWTGTGKNFVSRLIAEHLYKSGM 82 (127)
T ss_pred CHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcC-CCCCCCE-EEEeecCCCCcHHHHHHHHHHHHHhccc
Confidence 355788889999999999999999999887644 4688887 7779999999999999999999987653
No 398
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.98 E-value=6.2e-09 Score=120.39 Aligned_cols=220 Identities=14% Similarity=0.198 Sum_probs=117.2
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEE-ec---ccccccccch
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIR-ID---MSEFIEKHSI 463 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~-~~---~~~~~~~~~~ 463 (899)
.+++|+++.++.+..++.....+ ..+...++|+||||||||++++++|+.+ +..++. .+ +....+....
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~----~~~~~illL~GP~GsGKTTl~~~la~~l---~~~~~Ew~npv~~~~~~~~~~~ 156 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLE----NAPKRILLITGPSGCGKSTTIKILSKEL---GIQVQEWSNPTLPDFQKNDHKV 156 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccc----cCCCcEEEEECCCCCCHHHHHHHHHHHh---hhHHHHHhhhhhhccccccccc
Confidence 56889999999998888754322 1222258999999999999999999988 433322 11 1110000000
Q ss_pred hhccCCCCCcccccccchhhHHH---H----------hCCCEEEEEccccccCH----HHHHHHH-HhhcCCceecCCCc
Q psy2887 464 SRLIGAPPGYIGYEEGGYLTEIV---R----------RKPYSLILLDEIEKANS----DVFNILL-QILDDGRLTDNRGR 525 (899)
Q Consensus 464 ~~l~g~~~~~~g~~~~~~l~~~~---~----------~~~~~vl~lDEid~~~~----~~~~~Ll-~~le~g~~~~~~g~ 525 (899)
...++..-... ......+...+ . .....||||||++.+.. ..++.|+ ...+.+.
T Consensus 157 ~~s~~~~~~~~-~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~------- 228 (637)
T TIGR00602 157 TLSLESCFSNF-QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGR------- 228 (637)
T ss_pred chhhhhccccc-cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCC-------
Confidence 00000000000 01111121111 1 12345999999965443 3334333 3443321
Q ss_pred eEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhh--ccCeEEEecCCCHHHHHHHHHHHHHHHHH
Q psy2887 526 TINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNILKN 603 (899)
Q Consensus 526 ~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~~~~~~i~~~~l~~~~~ 603 (899)
-.+|+++|......-.. . ...-.....+++++++ |+ .+|.|+|++...+.+.+...+..-..
T Consensus 229 -----~pLI~I~TE~~~~~~~~---~-------~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~ 292 (637)
T TIGR00602 229 -----CPLVFIITESLEGDNNQ---R-------RLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAK 292 (637)
T ss_pred -----ceEEEEecCCccccccc---c-------ccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhh
Confidence 12333333222110000 0 0000011234588887 55 58999999999999998888855322
Q ss_pred HHHhcCcceee-cHHHHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 604 KLLKMNMDLKI-SKAALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 604 ~~~~~~~~~~~-~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
.+ +....+ ++++++.|+. ...||++..+..|+-+.
T Consensus 293 ~~---~~~~~~p~~~~l~~I~~------~s~GDiRsAIn~LQf~~ 328 (637)
T TIGR00602 293 KN---GEKIKVPKKTSVELLCQ------GCSGDIRSAINSLQFSS 328 (637)
T ss_pred cc---ccccccCCHHHHHHHHH------hCCChHHHHHHHHHHHH
Confidence 11 112233 5788888877 55799999877777543
No 399
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.98 E-value=2.7e-09 Score=114.95 Aligned_cols=141 Identities=17% Similarity=0.216 Sum_probs=91.3
Q ss_pred eEEEEecCCCChHHHHHHHHHHHhccCCCc---eEEecccc---ccc-ccchhhccCCC-----C----Ccccccccchh
Q psy2887 419 GSFMFLGPTGVGKTELCKTLSACIFNNEES---IIRIDMSE---FIE-KHSISRLIGAP-----P----GYIGYEEGGYL 482 (899)
Q Consensus 419 ~~ill~GppGtGKT~lA~~la~~l~~~~~~---~~~~~~~~---~~~-~~~~~~l~g~~-----~----~~~g~~~~~~l 482 (899)
+.+||+||+|+|||++|+.+|+.+...... .-+-.|.. +.. .|..-..+... . ..++.+..+.+
T Consensus 22 hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~l 101 (325)
T PRK08699 22 NAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVREI 101 (325)
T ss_pred eEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHHH
Confidence 369999999999999999999999532110 01111211 100 01111111110 0 11333444555
Q ss_pred hHHHHhC----CCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHH
Q psy2887 483 TEIVRRK----PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKL 558 (899)
Q Consensus 483 ~~~~~~~----~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~ 558 (899)
.+.+... ...|+++|+++.+++..++.|++.||+. ..++.||++|+....
T Consensus 102 ~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep-----------~~~~~~Ilvth~~~~--------------- 155 (325)
T PRK08699 102 IDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEP-----------PPQVVFLLVSHAADK--------------- 155 (325)
T ss_pred HHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhC-----------cCCCEEEEEeCChHh---------------
Confidence 5555543 3579999999999999999999999982 245667777774332
Q ss_pred HHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHH
Q psy2887 559 AVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN 595 (899)
Q Consensus 559 ~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~ 595 (899)
+.|.+.+|| ..+.|.|++.++..+.+.
T Consensus 156 ---------ll~ti~SRc-~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 156 ---------VLPTIKSRC-RKMVLPAPSHEEALAYLR 182 (325)
T ss_pred ---------ChHHHHHHh-hhhcCCCCCHHHHHHHHH
Confidence 455689999 899999999999877653
No 400
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.96 E-value=2.7e-09 Score=116.78 Aligned_cols=139 Identities=20% Similarity=0.253 Sum_probs=79.0
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEe----hhhhhcCccc--CchH--HHHHHHHHHHHHhc
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLD----IALLLAGTKY--RGEF--EDRLKKILKEISNN 83 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~----~~~l~~~~~~--~g~~--~~~l~~~~~~~~~~ 83 (899)
.+.|++|+||||||||++|+.+|..+.....+. ....+.+. ...++.|..- .|-. ...+.+++..|...
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~---~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~ 269 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQ---RVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQ 269 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccc---eeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhc
Confidence 467999999999999999999999874321111 11122221 1122222211 1100 01244555556533
Q ss_pred -CCCEEEEEccccccccCCCCCchhhHH---------Hhhh--------hhhcCCceEEEEecChhHHHHhhhcCHHHHh
Q psy2887 84 -QKDIIIFIDELHTMIGTGKVEGSIDAG---------NMLK--------PELSRGELHCIGATTLNEYRQYIEKDAAFER 145 (899)
Q Consensus 84 -~~~~iL~iDEi~~l~~~~~~~~~~~~~---------~~l~--------~~l~~~~v~vI~at~~~~~~~~~~ld~al~~ 145 (899)
..|.||||||+++...+.-.+.-..+. ..-+ .+.-..++.+|||+|..+ +....+|.||+|
T Consensus 270 p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~D-rs~~~lD~AlrR 348 (459)
T PRK11331 270 PEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTAD-RSLAVVDYALRR 348 (459)
T ss_pred ccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccc-cchhhccHHHHh
Confidence 358999999999765322000000000 0000 011134789999999987 344468999999
Q ss_pred ccccccccC
Q psy2887 146 RFQKILVEE 154 (899)
Q Consensus 146 Rf~~i~l~~ 154 (899)
||..|++.+
T Consensus 349 RF~fi~i~p 357 (459)
T PRK11331 349 RFSFIDIEP 357 (459)
T ss_pred hhheEEecC
Confidence 999888775
No 401
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=1.4e-08 Score=108.52 Aligned_cols=160 Identities=15% Similarity=0.175 Sum_probs=106.1
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCC-----------ccCCCeEEEEehhhhhcCccc-CchHHHHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPN-----------SLLSKKILLLDIALLLAGTKY-RGEFEDRLKKILK 78 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~-----------~l~~~~~~~~~~~~l~~~~~~-~g~~~~~l~~~~~ 78 (899)
+-+..+||+||+|+||+++|.++|+.+....... .-...+++.+....-..|.+. ..-..+.++++.+
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 4444589999999999999999999886432110 001112333311000001000 1122446777776
Q ss_pred HHHhc---CCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC--ceEEEEecChhHHHHhhhcCHHHHhcccccccc
Q psy2887 79 EISNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG--ELHCIGATTLNEYRQYIEKDAAFERRFQKILVE 153 (899)
Q Consensus 79 ~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~--~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~ 153 (899)
.+... ++.-|++||++|.|.. .+.|.|+..||.. .+++|.+|+.++ .+-|.++|||..+.|+
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m~~--------~AaNaLLKtLEEPp~~~~fiL~~~~~~-----~lLpTIrSRCq~i~~~ 170 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAINR--------AACNALLKTLEEPSPGRYLWLISAQPA-----RLPATIRSRCQRLEFK 170 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhhCH--------HHHHHHHHHhhCCCCCCeEEEEECChh-----hCchHHHhhheEeeCC
Confidence 65422 3346999999999964 7889999999864 778888888888 7889999999999999
Q ss_pred CCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhh
Q psy2887 154 EPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYR 193 (899)
Q Consensus 154 ~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (899)
.|+.++..++|... .+++.....++.++++
T Consensus 171 ~~~~~~~~~~L~~~----------~~~~~~a~~~~~l~~G 200 (319)
T PRK08769 171 LPPAHEALAWLLAQ----------GVSERAAQEALDAARG 200 (319)
T ss_pred CcCHHHHHHHHHHc----------CCChHHHHHHHHHcCC
Confidence 99999988888631 1344444455666655
No 402
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.96 E-value=6.5e-10 Score=109.28 Aligned_cols=109 Identities=22% Similarity=0.359 Sum_probs=74.5
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 499 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 499 (899)
+++|+||||||||+||.++++.+...+.++..++.+++...-... +. ......+...+... .+|+|||+
T Consensus 49 ~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~--------~~-~~~~~~~~~~l~~~--dlLilDDl 117 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQS--------RS-DGSYEELLKRLKRV--DLLILDDL 117 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCC--------HC-CTTHCHHHHHHHTS--SCEEEETC
T ss_pred EEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccccc--------cc-ccchhhhcCccccc--cEeccccc
Confidence 799999999999999999999998889999999988876653221 10 11112344555544 49999999
Q ss_pred ccc--CHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhc
Q psy2887 500 EKA--NSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEK 550 (899)
Q Consensus 500 d~~--~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~ 550 (899)
... .+...+.|+++|+... .+.-.|+|||...+.+.+..+
T Consensus 118 G~~~~~~~~~~~l~~ii~~R~-----------~~~~tIiTSN~~~~~l~~~~~ 159 (178)
T PF01695_consen 118 GYEPLSEWEAELLFEIIDERY-----------ERKPTIITSNLSPSELEEVLG 159 (178)
T ss_dssp TSS---HHHHHCTHHHHHHHH-----------HT-EEEEEESS-HHHHHT---
T ss_pred ceeeecccccccchhhhhHhh-----------cccCeEeeCCCchhhHhhccc
Confidence 754 4567888899998621 233577899999988777554
No 403
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=1.4e-08 Score=109.94 Aligned_cols=166 Identities=15% Similarity=0.159 Sum_probs=113.3
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCC--------------ccCCCeEEEEehhhhhcCcccCchHHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPN--------------SLLSKKILLLDIALLLAGTKYRGEFEDRLKKI 76 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~--------------~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~ 76 (899)
+-+..+||+||+|+||+++|.++|+.+....... .....+++.+.... +.. .-..+.++++
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~---~~~--~I~idqiR~l 96 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK---GKS--SLGVDAVREV 96 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc---ccc--cCCHHHHHHH
Confidence 4455678999999999999999999985421100 01122333332210 001 1223457777
Q ss_pred HHHHHh---cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhcccccc
Q psy2887 77 LKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKIL 151 (899)
Q Consensus 77 ~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~ 151 (899)
.+.+.. .++.-|++||++|.|.. .+.|.|+..||+ +..++|..|..++ .+-|.++||++.+.
T Consensus 97 ~~~~~~~~~~g~~kV~iI~~ae~m~~--------~AaNaLLKtLEEPp~~t~fiL~t~~~~-----~lLpTIrSRCq~~~ 163 (334)
T PRK07993 97 TEKLYEHARLGGAKVVWLPDAALLTD--------AAANALLKTLEEPPENTWFFLACREPA-----RLLATLRSRCRLHY 163 (334)
T ss_pred HHHHhhccccCCceEEEEcchHhhCH--------HHHHHHHHHhcCCCCCeEEEEEECChh-----hChHHHHhcccccc
Confidence 666542 23456999999999964 789999999985 4688888888888 89999999999999
Q ss_pred ccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHH
Q psy2887 152 VEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLID 209 (899)
Q Consensus 152 l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~ 209 (899)
|++|+.++..++|..- ..++++....++.++++.. .+|.++++
T Consensus 164 ~~~~~~~~~~~~L~~~---------~~~~~~~a~~~~~la~G~~------~~Al~l~~ 206 (334)
T PRK07993 164 LAPPPEQYALTWLSRE---------VTMSQDALLAALRLSAGAP------GAALALLQ 206 (334)
T ss_pred CCCCCHHHHHHHHHHc---------cCCCHHHHHHHHHHcCCCH------HHHHHHhc
Confidence 9999999988888631 1255555666677776643 35555543
No 404
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=2.5e-08 Score=107.12 Aligned_cols=175 Identities=18% Similarity=0.183 Sum_probs=113.2
Q ss_pred CCCCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCC--------ccCCCeEEEEehhhhhcCcc-------cCc------
Q psy2887 9 NFYFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPN--------SLLSKKILLLDIALLLAGTK-------YRG------ 67 (899)
Q Consensus 9 ~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~--------~l~~~~~~~~~~~~l~~~~~-------~~g------ 67 (899)
..+-+..+||+||+|+||+++|.++|+.+.....+. ......++.+.......|.. ..|
T Consensus 22 ~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~ 101 (314)
T PRK07399 22 QNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAP 101 (314)
T ss_pred hCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhcccccccc
Confidence 345667899999999999999999999986433110 11222334333321111110 000
Q ss_pred --hHHHHHHHHHHHHHh---cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC-CceEEEEecChhHHHHhhhcCH
Q psy2887 68 --EFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-GELHCIGATTLNEYRQYIEKDA 141 (899)
Q Consensus 68 --~~~~~l~~~~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~-~~v~vI~at~~~~~~~~~~ld~ 141 (899)
-..+.++++.+.+.. .++..|++||++|.|.. .+.|.|+..||. +..++|..|+.++ .+-|
T Consensus 102 ~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~--------~aaNaLLK~LEEPp~~~fILi~~~~~-----~Ll~ 168 (314)
T PRK07399 102 PQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE--------AAANALLKTLEEPGNGTLILIAPSPE-----SLLP 168 (314)
T ss_pred ccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH--------HHHHHHHHHHhCCCCCeEEEEECChH-----hCcH
Confidence 112345666555542 24467999999999954 678899999974 3567788888777 8899
Q ss_pred HHHhccccccccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHH
Q psy2887 142 AFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLID 209 (899)
Q Consensus 142 al~~Rf~~i~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~ 209 (899)
++++|+..+.|++|+.++..++|+..... . ..+.....++.++.|. |.+++.+++
T Consensus 169 TI~SRcq~i~f~~l~~~~~~~~L~~~~~~----~---~~~~~~~~l~~~a~Gs------~~~al~~l~ 223 (314)
T PRK07399 169 TIVSRCQIIPFYRLSDEQLEQVLKRLGDE----E---ILNINFPELLALAQGS------PGAAIANIE 223 (314)
T ss_pred HHHhhceEEecCCCCHHHHHHHHHHhhcc----c---cchhHHHHHHHHcCCC------HHHHHHHHH
Confidence 99999999999999999999999864321 1 1111234556666553 346666554
No 405
>KOG0375|consensus
Probab=98.95 E-value=2e-09 Score=109.44 Aligned_cols=119 Identities=21% Similarity=0.392 Sum_probs=85.2
Q ss_pred cccccccccccHHHHHHHHHHhhccCCccceeeccccCCCCceEehhHHHHHhcC----CccEEEccCChHhHHhHhhhc
Q psy2887 629 LIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMR----NYAKIVLGNHEIHLLDVLINI 704 (899)
Q Consensus 629 ~~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~~~~l~~~~----~~~~~v~GNHe~~~l~~~~~~ 704 (899)
+.-+.|||||.+=.|.++. .+|-.+...+.+|+|||||||--|++|+-+|++++ .....+|||||-.-|--+...
T Consensus 89 PiTVCGDIHGQf~DLmKLF-EVGG~PA~t~YLFLGDYVDRGyFSiECvlYLwsLKi~yp~tl~lLRGNHECrHLT~YFTF 167 (517)
T KOG0375|consen 89 PITVCGDIHGQFFDLMKLF-EVGGSPANTRYLFLGDYVDRGYFSIECVLYLWSLKINYPKTLFLLRGNHECRHLTEYFTF 167 (517)
T ss_pred CeeEecccchHHHHHHHHH-HccCCcccceeEeeccccccceeeeehHHHHHHHhcCCCCeEEEecCCcchhhhHhHhhH
Confidence 4456799999977777766 45667788899999999999999999999999885 357889999996654322211
Q ss_pred ccCchhchHHHhhCCcChHHHHHHHhcCCceEE-eCCEEEEecccccccc
Q psy2887 705 NKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIY-YKKYLMIHAGVAKQWT 753 (899)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~-~~~~~~vHAg~~~~~~ 753 (899)
....... ....-.+...+-+..||++-. .+.|++||||+.|+..
T Consensus 168 KqEc~iK-----Yse~vYdaCmesFd~LPLAAlmNqQflCVHGGlSPEi~ 212 (517)
T KOG0375|consen 168 KQECKIK-----YSERVYDACMESFDCLPLAALMNQQFLCVHGGLSPEIH 212 (517)
T ss_pred HHHHhHh-----ccHHHHHHHHHHhccchHHHHhcCceEEecCCCCcccc
Confidence 1110000 001113566778889998744 4679999999999754
No 406
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=8.2e-09 Score=105.48 Aligned_cols=107 Identities=24% Similarity=0.356 Sum_probs=75.5
Q ss_pred CEEEEEccccccccCCCCCc---h-hhHHHhhhhhhcC------------CceEEEEecChhHHHHhhhcCHHHHhcccc
Q psy2887 86 DIIIFIDELHTMIGTGKVEG---S-IDAGNMLKPELSR------------GELHCIGATTLNEYRQYIEKDAAFERRFQK 149 (899)
Q Consensus 86 ~~iL~iDEi~~l~~~~~~~~---~-~~~~~~l~~~l~~------------~~v~vI~at~~~~~~~~~~ld~al~~Rf~~ 149 (899)
.+|+||||+|.++..+..++ + ..++.-|+++++. ..+.||+++-.. ..+-.++-|.|..||+.
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh-~sKPSDLiPELQGRfPI 329 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFH-VAKPSDLIPELQGRFPI 329 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCcee-cCChhhcChhhcCCCce
Confidence 45999999999998765332 1 2355677888763 357888887532 12223678999999996
Q ss_pred -ccccCCCHHHHHHHHH----hhhhhhhc---cc--CCCCCHHHHHHHHhhhhh
Q psy2887 150 -ILVEEPDIEETISILR----GLQKKYEV---HH--GVEITDPAIVAASELSYR 193 (899)
Q Consensus 150 -i~l~~p~~~e~~~il~----~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~ 193 (899)
+++..++.++-..||. .++++|.. .. .+.|+++++..+++++-.
T Consensus 330 RVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~ 383 (444)
T COG1220 330 RVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQ 383 (444)
T ss_pred EEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHH
Confidence 9999999999999983 45555542 22 347888888888777633
No 407
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.94 E-value=5.3e-08 Score=103.88 Aligned_cols=183 Identities=18% Similarity=0.173 Sum_probs=105.2
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEE--Eehhh----hh--cCcccCch----HHHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL--LDIAL----LL--AGTKYRGE----FEDRLKKILKEI 80 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~--~~~~~----l~--~~~~~~g~----~~~~l~~~~~~~ 80 (899)
.+.++|+||+|+||||+++.+++.+....+. ...+.. .+... +. .|....+. ....+...+...
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~----~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVV----AAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeE----EeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4468899999999999999999887422110 000000 01110 00 11111111 112233333333
Q ss_pred HhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhc-----CCceEEEEecChhHHHHhhhc--CHHHHhccc-cccc
Q psy2887 81 SNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS-----RGELHCIGATTLNEYRQYIEK--DAAFERRFQ-KILV 152 (899)
Q Consensus 81 ~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~-----~~~v~vI~at~~~~~~~~~~l--d~al~~Rf~-~i~l 152 (899)
...+.+.+|+|||++.+.. ...+.+..+.+ ...+.++.++.+ ++...+.. ...+.+|+. .+.+
T Consensus 119 ~~~~~~~vliiDe~~~l~~--------~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~~l 189 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTP--------ELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIASCHL 189 (269)
T ss_pred HhCCCCeEEEEECcccCCH--------HHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheeeeeeC
Confidence 3345678999999999853 22233332221 223344555444 33333321 235777876 4889
Q ss_pred cCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 153 EEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 153 ~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
++++.++..+++...+..........+++++++.+++.+.|+. .....+++.+...
T Consensus 190 ~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p------~~i~~l~~~~~~~ 245 (269)
T TIGR03015 190 GPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP------RLINILCDRLLLS 245 (269)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc------cHHHHHHHHHHHH
Confidence 9999999999998877754433445789999999999997753 3555666665444
No 408
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.94 E-value=6.4e-08 Score=105.20 Aligned_cols=154 Identities=17% Similarity=0.199 Sum_probs=104.4
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHh---cCCCE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN---NQKDI 87 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~---~~~~~ 87 (899)
+-+.-+||+||+|+|||++|+.+|+.+........ ...++.+... .|. .. ....++++.+.+.. .++.-
T Consensus 24 ~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~--h~D~~~~~~~---~~~-~i--~v~~ir~~~~~~~~~p~~~~~k 95 (313)
T PRK05564 24 RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQRE--YVDIIEFKPI---NKK-SI--GVDDIRNIIEEVNKKPYEGDKK 95 (313)
T ss_pred CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCC--CCCeEEeccc---cCC-CC--CHHHHHHHHHHHhcCcccCCce
Confidence 34445589999999999999999998754321111 1123333221 111 11 12346666665431 23456
Q ss_pred EEEEccccccccCCCCCchhhHHHhhhhhhcCC--ceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHHHHHHHHH
Q psy2887 88 IIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG--ELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILR 165 (899)
Q Consensus 88 iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~--~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~il~ 165 (899)
|++||++|.+.. .+.|.|+..+|++ .+++|.+|+.++ .+-|++++|+..+.|+.|+.++...+++
T Consensus 96 v~iI~~ad~m~~--------~a~naLLK~LEepp~~t~~il~~~~~~-----~ll~TI~SRc~~~~~~~~~~~~~~~~l~ 162 (313)
T PRK05564 96 VIIIYNSEKMTE--------QAQNAFLKTIEEPPKGVFIILLCENLE-----QILDTIKSRCQIYKLNRLSKEEIEKFIS 162 (313)
T ss_pred EEEEechhhcCH--------HHHHHHHHHhcCCCCCeEEEEEeCChH-----hCcHHHHhhceeeeCCCcCHHHHHHHHH
Confidence 999999999853 6788999999863 466676766666 7889999999999999999999988886
Q ss_pred hhhhhhhcccCCCCCHHHHHHHHhhhhh
Q psy2887 166 GLQKKYEVHHGVEITDPAIVAASELSYR 193 (899)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (899)
.... .++++.+..++.++++
T Consensus 163 ~~~~--------~~~~~~~~~l~~~~~g 182 (313)
T PRK05564 163 YKYN--------DIKEEEKKSAIAFSDG 182 (313)
T ss_pred HHhc--------CCCHHHHHHHHHHcCC
Confidence 5332 3566777777777655
No 409
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=4.3e-09 Score=107.13 Aligned_cols=135 Identities=16% Similarity=0.124 Sum_probs=91.0
Q ss_pred eEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccc---ccc-ccchhhccCCCCCcccccccchhhHHHHh-----C
Q psy2887 419 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE---FIE-KHSISRLIGAPPGYIGYEEGGYLTEIVRR-----K 489 (899)
Q Consensus 419 ~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~---~~~-~~~~~~l~g~~~~~~g~~~~~~l~~~~~~-----~ 489 (899)
+.+||+||+|+||..+|.++|+.++.....-.+-.|.. +.. .|..-.++......++.++.+.+.+.+.. +
T Consensus 8 HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e~~ 87 (261)
T PRK05818 8 HPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVESN 87 (261)
T ss_pred cceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchhcC
Confidence 37999999999999999999999954332111111111 111 11111122222223455555556555432 2
Q ss_pred CCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCC
Q psy2887 490 PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFR 569 (899)
Q Consensus 490 ~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 569 (899)
++.|++|+++|++.....|+||+.||+ +..+++||++|+.... +.
T Consensus 88 ~~KV~II~~ae~m~~~AaNaLLK~LEE-----------Pp~~t~fiLit~~~~~------------------------lL 132 (261)
T PRK05818 88 GKKIYIIYGIEKLNKQSANSLLKLIEE-----------PPKNTYGIFTTRNENN------------------------IL 132 (261)
T ss_pred CCEEEEeccHhhhCHHHHHHHHHhhcC-----------CCCCeEEEEEECChHh------------------------Cc
Confidence 467999999999999999999999999 6789999999986544 45
Q ss_pred hhHhhccCeEEEecCCCHHH
Q psy2887 570 PEFINRIDDIIVFRYLNRKN 589 (899)
Q Consensus 570 ~~l~~R~~~~i~f~~l~~~~ 589 (899)
|-++||| +.+.|+++....
T Consensus 133 pTI~SRC-q~~~~~~~~~~~ 151 (261)
T PRK05818 133 NTILSRC-VQYVVLSKEKKV 151 (261)
T ss_pred hHhhhhe-eeeecCChhhhc
Confidence 6689999 788888874443
No 410
>PRK08181 transposase; Validated
Probab=98.93 E-value=2.9e-09 Score=111.06 Aligned_cols=108 Identities=15% Similarity=0.341 Sum_probs=75.8
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 499 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 499 (899)
+++|+||||||||+||.+++..+...+.+++.++++++......... . .....+...+. ...+|+|||+
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~--------~-~~~~~~l~~l~--~~dLLIIDDl 176 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARR--------E-LQLESAIAKLD--KFDLLILDDL 176 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHh--------C-CcHHHHHHHHh--cCCEEEEecc
Confidence 69999999999999999999999887888888888776654221100 0 00012223333 3459999999
Q ss_pred cccC--HHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhh
Q psy2887 500 EKAN--SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEME 549 (899)
Q Consensus 500 d~~~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~ 549 (899)
+... +..+..|+++++.. ..+.-+|+|||.++..+...+
T Consensus 177 g~~~~~~~~~~~Lf~lin~R-----------~~~~s~IiTSN~~~~~w~~~~ 217 (269)
T PRK08181 177 AYVTKDQAETSVLFELISAR-----------YERRSILITANQPFGEWNRVF 217 (269)
T ss_pred ccccCCHHHHHHHHHHHHHH-----------HhCCCEEEEcCCCHHHHHHhc
Confidence 8664 45667899999852 122458999999998776644
No 411
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=2.4e-08 Score=106.87 Aligned_cols=138 Identities=15% Similarity=0.205 Sum_probs=98.7
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCC-----c---------cCCCeEEEEehhhhhcCcccCchHHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPN-----S---------LLSKKILLLDIALLLAGTKYRGEFEDRLKKI 76 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~-----~---------l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~ 76 (899)
+-+..+||+||+|+||+++|+.+|+.+....... . -....++.+... . ++.. ..+.++++
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~---~-~~~I--~id~iR~l 95 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI---D-NKDI--GVDQVREI 95 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc---c-CCCC--CHHHHHHH
Confidence 4445678999999999999999999886432110 0 011223333221 1 1111 23457777
Q ss_pred HHHHHh---cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhcccccc
Q psy2887 77 LKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKIL 151 (899)
Q Consensus 77 ~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~ 151 (899)
.+.+.. .++.-|++||++|.|.. .+.|.|+..||. ..+++|.+|+.++ .+-|.++||+..+.
T Consensus 96 ~~~~~~~~~~g~~KV~iI~~a~~m~~--------~AaNaLLKtLEEPp~~~~fiL~t~~~~-----~llpTI~SRC~~~~ 162 (325)
T PRK06871 96 NEKVSQHAQQGGNKVVYIQGAERLTE--------AAANALLKTLEEPRPNTYFLLQADLSA-----ALLPTIYSRCQTWL 162 (325)
T ss_pred HHHHhhccccCCceEEEEechhhhCH--------HHHHHHHHHhcCCCCCeEEEEEECChH-----hCchHHHhhceEEe
Confidence 666542 23456999999999964 788999999985 4688888888888 89999999999999
Q ss_pred ccCCCHHHHHHHHHhh
Q psy2887 152 VEEPDIEETISILRGL 167 (899)
Q Consensus 152 l~~p~~~e~~~il~~~ 167 (899)
|++|+.++..++|...
T Consensus 163 ~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 163 IHPPEEQQALDWLQAQ 178 (325)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999998888753
No 412
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.93 E-value=2.6e-08 Score=107.44 Aligned_cols=129 Identities=17% Similarity=0.142 Sum_probs=85.4
Q ss_pred CEEEEEccccccccCCCCCchhhHHHhhhhhhcCC---------------ceEEEEecChhHHHHhhhcCHHHHhcccc-
Q psy2887 86 DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG---------------ELHCIGATTLNEYRQYIEKDAAFERRFQK- 149 (899)
Q Consensus 86 ~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~---------------~v~vI~at~~~~~~~~~~ld~al~~Rf~~- 149 (899)
+.+||+||++.|.+ ..++.|+..|+.+ .+++|+++|+.+ -.+.++|..||..
T Consensus 132 ~GvL~lDEi~~L~~--------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~e----g~l~~~LldRf~l~ 199 (337)
T TIGR02030 132 RGILYIDEVNLLED--------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEE----GELRPQLLDRFGLH 199 (337)
T ss_pred CCEEEecChHhCCH--------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEecccccc----CCCCHHHHhhcceE
Confidence 45999999999854 4556677776543 357777777653 2589999999996
Q ss_pred ccccCCCH-HHHHHHHHhhhhh----------h---------------hcccCCCCCHHHHHHHHhhhhhhcccCCCchh
Q psy2887 150 ILVEEPDI-EETISILRGLQKK----------Y---------------EVHHGVEITDPAIVAASELSYRYISDRFMPDK 203 (899)
Q Consensus 150 i~l~~p~~-~e~~~il~~~~~~----------~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 203 (899)
+.++.|+. +++.+|++..... + +.-.++.+++++++++++++...-. .-|..
T Consensus 200 i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~--~s~Ra 277 (337)
T TIGR02030 200 AEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDV--DGLRG 277 (337)
T ss_pred EECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCC--CCCcH
Confidence 88888875 8888888652211 0 1124567888888888888765322 13456
Q ss_pred HHHHHHHHHHhhhhhh--cCChhHHHH
Q psy2887 204 AIDLIDEAAAKIKIEI--DSKPEIMDK 228 (899)
Q Consensus 204 ~~~ll~~a~~~~~~~~--~~~~~~l~~ 228 (899)
.+.++..|.+.+.++. .-.++++..
T Consensus 278 ~i~l~raArA~Aal~GR~~V~~dDv~~ 304 (337)
T TIGR02030 278 ELTLNRAAKALAAFEGRTEVTVDDIRR 304 (337)
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 6677776666665543 344555543
No 413
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=1.3e-08 Score=109.69 Aligned_cols=143 Identities=15% Similarity=0.144 Sum_probs=100.4
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCC-CC--------------ccCCCeEEEEehhhhh---------------
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEV-PN--------------SLLSKKILLLDIALLL--------------- 60 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~-p~--------------~l~~~~~~~~~~~~l~--------------- 60 (899)
+-+..+||+||+|+||+++|+.+|+.+..... +. ......++.+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 55667889999999999999999998865321 00 0112223333222110
Q ss_pred --cCcc---c-CchHHHHHHHHHHHHHh---cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecC
Q psy2887 61 --AGTK---Y-RGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATT 129 (899)
Q Consensus 61 --~~~~---~-~g~~~~~l~~~~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~ 129 (899)
.|.+ . ..-..+.++++.+.+.. .++.-|++||++|.|.. .+.|.|+..||+ ..+++|.+|+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~--------~AaNaLLKtLEEPp~~t~fiL~t~ 170 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV--------AAANALLKTLEEPPPGTVFLLVSA 170 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH--------HHHHHHHHHhcCCCcCcEEEEEEC
Confidence 0000 0 01223467777766542 23456999999999964 788999999985 4688999999
Q ss_pred hhHHHHhhhcCHHHHhccccccccCCCHHHHHHHHHh
Q psy2887 130 LNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRG 166 (899)
Q Consensus 130 ~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~il~~ 166 (899)
.++ .+.|.++|||..+.|++|+.++..++|..
T Consensus 171 ~~~-----~LLpTI~SRcq~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 171 RID-----RLLPTILSRCRQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred Chh-----hCcHHHHhcCEEEEecCCCHHHHHHHHHH
Confidence 988 89999999999999999999999998864
No 414
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.91 E-value=1.3e-10 Score=103.95 Aligned_cols=112 Identities=20% Similarity=0.198 Sum_probs=58.2
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhh-hh----cCcccCchHHHHHHHHHHHHHhcCCCEEE
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIAL-LL----AGTKYRGEFEDRLKKILKEISNNQKDIII 89 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~-l~----~~~~~~g~~~~~l~~~~~~~~~~~~~~iL 89 (899)
|+||.|+||+|||++|+++|+.+ +..+..+.+.. +. .|..+..... ..|.-...---..|+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~----------~~~f~RIq~tpdllPsDi~G~~v~~~~~----~~f~~~~GPif~~il 66 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL----------GLSFKRIQFTPDLLPSDILGFPVYDQET----GEFEFRPGPIFTNIL 66 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT----------T--EEEEE--TT--HHHHHEEEEEETTT----TEEEEEE-TT-SSEE
T ss_pred CEeeECCCccHHHHHHHHHHHHc----------CCceeEEEecCCCCcccceeeeeeccCC----CeeEeecChhhhcee
Confidence 79999999999999999999998 66666555431 11 0111000000 000000000002399
Q ss_pred EEccccccccCCCCCchhhHHHhhhhhhcCC-------------ceEEEEecChhHHHHhhhcCHHHHhccc
Q psy2887 90 FIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCIGATTLNEYRQYIEKDAAFERRFQ 148 (899)
Q Consensus 90 ~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~-------------~v~vI~at~~~~~~~~~~ld~al~~Rf~ 148 (899)
++||+.+..+ ..+.+|++.|+.+ .+.||+|.|+.++...+.++.+++.||-
T Consensus 67 l~DEiNrapp--------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 67 LADEINRAPP--------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp EEETGGGS-H--------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred eecccccCCH--------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 9999999866 4556788887533 4678999999998888999999999994
No 415
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.91 E-value=1.2e-08 Score=110.70 Aligned_cols=160 Identities=19% Similarity=0.150 Sum_probs=100.2
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCc---c--------cCchHHHHHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGT---K--------YRGEFEDRLKKILKE 79 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~---~--------~~g~~~~~l~~~~~~ 79 (899)
....+|||+|++||||+++|++|....... +.+++.++|..+.... . +.|... .-...|..
T Consensus 20 ~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~-------~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~-~~~G~~~~ 91 (329)
T TIGR02974 20 PLDRPVLIIGERGTGKELIAARLHYLSKRW-------QGPLVKLNCAALSENLLDSELFGHEAGAFTGAQK-RHQGRFER 91 (329)
T ss_pred CCCCCEEEECCCCChHHHHHHHHHHhcCcc-------CCCeEEEeCCCCChHHHHHHHhccccccccCccc-ccCCchhh
Confidence 356789999999999999999998755322 5689999987543100 0 000000 00111222
Q ss_pred HHhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC-------------ceEEEEecChhHH--HHhhhcCHHHH
Q psy2887 80 ISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCIGATTLNEY--RQYIEKDAAFE 144 (899)
Q Consensus 80 ~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~-------------~v~vI~at~~~~~--~~~~~ld~al~ 144 (899)
+ .+++|||||++.|.. +.+..|...++.+ ++.+|++|+..-- ...-...+.|.
T Consensus 92 a----~gGtL~Ldei~~L~~--------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~ 159 (329)
T TIGR02974 92 A----DGGTLFLDELATASL--------LVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLL 159 (329)
T ss_pred C----CCCEEEeCChHhCCH--------HHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHH
Confidence 2 356999999999964 5556677777533 4689999876531 11223567888
Q ss_pred hcccc--ccccCCC--HHHHHHHHHhhhhhhhcccC----CCCCHHHHHHHHhh
Q psy2887 145 RRFQK--ILVEEPD--IEETISILRGLQKKYEVHHG----VEITDPAIVAASEL 190 (899)
Q Consensus 145 ~Rf~~--i~l~~p~--~~e~~~il~~~~~~~~~~~~----~~~~~~~~~~~~~~ 190 (899)
.||.. |.+|+.. .++...+++.++.++....+ ..+++++++.+...
T Consensus 160 ~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y 213 (329)
T TIGR02974 160 DRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEY 213 (329)
T ss_pred HHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhC
Confidence 89976 4455444 34555666777766554322 46899998877554
No 416
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.90 E-value=9.9e-09 Score=118.73 Aligned_cols=187 Identities=13% Similarity=0.077 Sum_probs=112.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHcCC---C-CCccC-CCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHh--------
Q psy2887 16 PVLIGEPGVGKTAIVEGLAQRIINGE---V-PNSLL-SKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN-------- 82 (899)
Q Consensus 16 iLL~GppGtGKTtla~~la~~l~~~~---~-p~~l~-~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~-------- 82 (899)
++|+|||||||||+++.+|+.+.... . |.... ....+.+ ...+...-.......+.++.++..+..
T Consensus 113 llL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~~~~~-~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~ 191 (637)
T TIGR00602 113 LLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKNDHKV-TLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDD 191 (637)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccccccccc-chhhhhccccccchHHHHHHHHHHHHhhhcccccc
Confidence 88999999999999999999873210 0 00000 0000000 000000000111223356666665542
Q ss_pred -cCCCEEEEEccccccccCCCCCchhhHHHhhh-hhhcCCceEEEEecChhHH------HHhhh----cCHHHHh--ccc
Q psy2887 83 -NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLK-PELSRGELHCIGATTLNEY------RQYIE----KDAAFER--RFQ 148 (899)
Q Consensus 83 -~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~-~~l~~~~v~vI~at~~~~~------~~~~~----ld~al~~--Rf~ 148 (899)
.....||||||++.++... .....+.|+ ...+.+.+.+|+++|.... ...+. +.+++++ |..
T Consensus 192 ~~~~~~IILIDEiPn~~~r~----~~~lq~lLr~~~~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~ 267 (637)
T TIGR00602 192 LMTDKKIILVEDLPNQFYRD----TRALHEILRWKYVSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS 267 (637)
T ss_pred cCCceeEEEeecchhhchhh----HHHHHHHHHHHhhcCCCceEEEEecCCccccccccccccchhcccCHhHhccccee
Confidence 2346799999999877532 223444555 4566777777777774322 11122 5588987 556
Q ss_pred cccccCCCHHHHHHHHHhhhhhhhc--ccCCCC-CHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHH
Q psy2887 149 KILVEEPDIEETISILRGLQKKYEV--HHGVEI-TDPAIVAASELSYRYISDRFMPDKAIDLIDEAAA 213 (899)
Q Consensus 149 ~i~l~~p~~~e~~~il~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~ 213 (899)
.|.|++.+..+..+.|+.+++.-.. .....+ +++++..++..+.|.+. .|+..|+.++.
T Consensus 268 ~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GDiR------sAIn~LQf~~~ 329 (637)
T TIGR00602 268 NISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGDIR------SAINSLQFSSS 329 (637)
T ss_pred EEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCChHH------HHHHHHHHHHh
Confidence 6999999999999999888875221 112223 57889999888888776 88888887763
No 417
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.89 E-value=1.7e-08 Score=116.51 Aligned_cols=177 Identities=16% Similarity=0.186 Sum_probs=103.8
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEE----ehhhhhcC---cccCchHHHHHHH-HHHHHHh
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL----DIALLLAG---TKYRGEFEDRLKK-ILKEISN 82 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~----~~~~l~~~---~~~~g~~~~~l~~-~~~~~~~ 82 (899)
+...||||+|+||||||++|+++++..... .+.. +...+... ....|++. ++. .+.
T Consensus 234 r~~~~vLL~G~pGtGKs~lar~l~~~~~r~----------~~~~~~~~~~~~l~~~~~~~~~~g~~~--~~~G~l~---- 297 (509)
T smart00350 234 RGDINILLLGDPGTAKSQLLKYVEKTAPRA----------VYTTGKGSSAVGLTAAVTRDPETREFT--LEGGALV---- 297 (509)
T ss_pred cccceEEEeCCCChhHHHHHHHHHHHcCcc----------eEcCCCCCCcCCccccceEccCcceEE--ecCccEE----
Confidence 445599999999999999999999865221 1111 11111100 00011110 000 011
Q ss_pred cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC---------------ceEEEEecChhHH--------HHhhhc
Q psy2887 83 NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG---------------ELHCIGATTLNEY--------RQYIEK 139 (899)
Q Consensus 83 ~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~---------------~v~vI~at~~~~~--------~~~~~l 139 (899)
....++|+|||++.+.+ .....|...|+.+ ...+|+|+|+.+- ...+.+
T Consensus 298 ~A~~Gil~iDEi~~l~~--------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l 369 (509)
T smart00350 298 LADNGVCCIDEFDKMDD--------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDL 369 (509)
T ss_pred ecCCCEEEEechhhCCH--------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCC
Confidence 12245999999999864 3445666666432 4578999998641 122479
Q ss_pred CHHHHhcccc--ccccCCCHHHHHHHHHhhhhhhhcc-------cCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHH
Q psy2887 140 DAAFERRFQK--ILVEEPDIEETISILRGLQKKYEVH-------HGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDE 210 (899)
Q Consensus 140 d~al~~Rf~~--i~l~~p~~~e~~~il~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~ 210 (899)
++++++||+. +.++.|+.+...+|++.++...... ....++.+.+......+..++.. .+++.+.+.+..
T Consensus 370 ~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P-~ls~~~~~~i~~ 448 (509)
T smart00350 370 PAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKP-KLSEEAAEKLVK 448 (509)
T ss_pred ChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCC-CCCHHHHHHHHH
Confidence 9999999985 6678999999999998876542210 11235556666655665553221 245555555444
Q ss_pred HH
Q psy2887 211 AA 212 (899)
Q Consensus 211 a~ 212 (899)
..
T Consensus 449 ~y 450 (509)
T smart00350 449 AY 450 (509)
T ss_pred HH
Confidence 43
No 418
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.89 E-value=1.4e-08 Score=110.65 Aligned_cols=135 Identities=20% Similarity=0.164 Sum_probs=94.3
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCcc--------------CCCeEEEEehhhhhcCcccCchHHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSL--------------LSKKILLLDIALLLAGTKYRGEFEDRLKKI 76 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l--------------~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~ 76 (899)
+-+..+||+||+|+|||++|+.+|+.+......... ....+..+... |. . ...+.++++
T Consensus 26 ~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~----~~-~--i~id~ir~l 98 (329)
T PRK08058 26 RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPD----GQ-S--IKKDQIRYL 98 (329)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccc----cc-c--CCHHHHHHH
Confidence 444456999999999999999999988543210000 01122222211 11 1 112356666
Q ss_pred HHHHH---hcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhcccccc
Q psy2887 77 LKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKIL 151 (899)
Q Consensus 77 ~~~~~---~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~ 151 (899)
.+.+. ..+..-|++|||+|.+.. .+.|.|+..||+ +.+++|.+|+... .+-|++++|+..+.
T Consensus 99 ~~~~~~~~~~~~~kvviI~~a~~~~~--------~a~NaLLK~LEEPp~~~~~Il~t~~~~-----~ll~TIrSRc~~i~ 165 (329)
T PRK08058 99 KEEFSKSGVESNKKVYIIEHADKMTA--------SAANSLLKFLEEPSGGTTAILLTENKH-----QILPTILSRCQVVE 165 (329)
T ss_pred HHHHhhCCcccCceEEEeehHhhhCH--------HHHHHHHHHhcCCCCCceEEEEeCChH-----hCcHHHHhhceeee
Confidence 66654 123456999999999854 688999999986 5788888888777 88899999999999
Q ss_pred ccCCCHHHHHHHHH
Q psy2887 152 VEEPDIEETISILR 165 (899)
Q Consensus 152 l~~p~~~e~~~il~ 165 (899)
|.+|+.++..++|+
T Consensus 166 ~~~~~~~~~~~~L~ 179 (329)
T PRK08058 166 FRPLPPESLIQRLQ 179 (329)
T ss_pred CCCCCHHHHHHHHH
Confidence 99999999877775
No 419
>PRK06526 transposase; Provisional
Probab=98.88 E-value=1.3e-09 Score=113.30 Aligned_cols=108 Identities=20% Similarity=0.374 Sum_probs=75.7
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHH-hCCCEEEEEcc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVR-RKPYSLILLDE 498 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~-~~~~~vl~lDE 498 (899)
+++|+||||||||++|.+|+..+...+.++..+.++++......... . +.+...+. -....+|+|||
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~-----------~-~~~~~~l~~l~~~dlLIIDD 167 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHH-----------A-GRLQAELVKLGRYPLLIVDE 167 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHh-----------c-CcHHHHHHHhccCCEEEEcc
Confidence 69999999999999999999999777777777766665543221110 0 11222222 23457999999
Q ss_pred ccccC--HHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhc
Q psy2887 499 IEKAN--SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEK 550 (899)
Q Consensus 499 id~~~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~ 550 (899)
++..+ +..++.|+++++.. ..+..+|+|||.+...+...++
T Consensus 168 ~g~~~~~~~~~~~L~~li~~r-----------~~~~s~IitSn~~~~~w~~~~~ 210 (254)
T PRK06526 168 VGYIPFEPEAANLFFQLVSSR-----------YERASLIVTSNKPFGRWGEVFG 210 (254)
T ss_pred cccCCCCHHHHHHHHHHHHHH-----------HhcCCEEEEcCCCHHHHHHHcC
Confidence 99764 67788899999752 2234589999999988777554
No 420
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.88 E-value=5.1e-08 Score=104.94 Aligned_cols=131 Identities=18% Similarity=0.114 Sum_probs=86.4
Q ss_pred CEEEEEccccccccCCCCCchhhHHHhhhhhhcCC---------------ceEEEEecChhHHHHhhhcCHHHHhcccc-
Q psy2887 86 DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG---------------ELHCIGATTLNEYRQYIEKDAAFERRFQK- 149 (899)
Q Consensus 86 ~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~---------------~v~vI~at~~~~~~~~~~ld~al~~Rf~~- 149 (899)
.++||+||++.+.+ ..++.|+..|+.+ .+++|++.|+.+ -.+.++|..||..
T Consensus 145 ~GiL~lDEInrL~~--------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~e----g~l~~~LldRf~l~ 212 (350)
T CHL00081 145 RGILYVDEVNLLDD--------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEE----GELRPQLLDRFGMH 212 (350)
T ss_pred CCEEEecChHhCCH--------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCccc----CCCCHHHHHHhCce
Confidence 45999999999965 4455666666432 356777777654 2589999999996
Q ss_pred ccccCCC-HHHHHHHHHhhhhh-------------------------hhcccCCCCCHHHHHHHHhhhhhhcccCCCchh
Q psy2887 150 ILVEEPD-IEETISILRGLQKK-------------------------YEVHHGVEITDPAIVAASELSYRYISDRFMPDK 203 (899)
Q Consensus 150 i~l~~p~-~~e~~~il~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 203 (899)
+.+..|+ .+++.+|++..... .+.-..+.+++.++.++++++...-. .-|..
T Consensus 213 i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~--~s~Ra 290 (350)
T CHL00081 213 AEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDV--DGLRG 290 (350)
T ss_pred eecCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCC--CCChH
Confidence 8899998 58888888753210 01123477888888888888766422 23556
Q ss_pred HHHHHHHHHHhhhhh--hcCChhHHHHHH
Q psy2887 204 AIDLIDEAAAKIKIE--IDSKPEIMDKLE 230 (899)
Q Consensus 204 ~~~ll~~a~~~~~~~--~~~~~~~l~~~~ 230 (899)
.+.++..|.+.+.++ ..-.|+++..+-
T Consensus 291 ~i~l~raArA~Aal~GR~~V~pdDv~~~a 319 (350)
T CHL00081 291 DIVTNRAAKALAAFEGRTEVTPKDIFKVI 319 (350)
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 666666666555543 334555554433
No 421
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.86 E-value=1e-08 Score=98.11 Aligned_cols=128 Identities=26% Similarity=0.369 Sum_probs=76.6
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEE
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFI 91 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~i 91 (899)
...+++++||||||||++++.+++.+... +..++.+++.............................+.+|++
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil 90 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRP-------GAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFI 90 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcC-------CCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEE
Confidence 45689999999999999999999988422 56677777665542221111000000111111222345789999
Q ss_pred ccccccccCCCCCchhhHHHhhhhhhc----CCceEEEEecChhHHHHhhhcCHHHHhccc-ccccc
Q psy2887 92 DELHTMIGTGKVEGSIDAGNMLKPELS----RGELHCIGATTLNEYRQYIEKDAAFERRFQ-KILVE 153 (899)
Q Consensus 92 DEi~~l~~~~~~~~~~~~~~~l~~~l~----~~~v~vI~at~~~~~~~~~~ld~al~~Rf~-~i~l~ 153 (899)
||++.+... ........+..... ...+.+|++++.... ..+++.+.+||. .+.++
T Consensus 91 De~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~---~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 91 DEIDSLSRG----AQNALLRVLETLNDLRIDRENVRVIGATNRPLL---GDLDRALYDRLDIRIVIP 150 (151)
T ss_pred eChhhhhHH----HHHHHHHHHHhcCceeccCCCeEEEEecCcccc---CCcChhHHhhhccEeecC
Confidence 999988321 11122233333332 357888888887762 356788999995 35554
No 422
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.86 E-value=5.9e-09 Score=112.12 Aligned_cols=109 Identities=20% Similarity=0.358 Sum_probs=75.4
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 499 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 499 (899)
+++|+||||||||+||.+||+.+...+..++.++.+++........+ . ...+.......+... .+|+||++
T Consensus 185 ~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~-~------~~~~~~~~~~~l~~~--DLLIIDDl 255 (329)
T PRK06835 185 NLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRF-N------NDKELEEVYDLLINC--DLLIIDDL 255 (329)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHh-c------cchhHHHHHHHhccC--CEEEEecc
Confidence 69999999999999999999999888888998888877553221111 0 000111112333333 59999999
Q ss_pred c--ccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhh
Q psy2887 500 E--KANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKE 547 (899)
Q Consensus 500 d--~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~ 547 (899)
. ...+..++.|+.+++... ..+.-+|+|||.+++.+..
T Consensus 256 G~e~~t~~~~~~Lf~iin~R~----------~~~k~tIiTSNl~~~el~~ 295 (329)
T PRK06835 256 GTEKITEFSKSELFNLINKRL----------LRQKKMIISTNLSLEELLK 295 (329)
T ss_pred CCCCCCHHHHHHHHHHHHHHH----------HCCCCEEEECCCCHHHHHH
Confidence 5 556778899999998621 1234589999998876544
No 423
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.84 E-value=1.8e-08 Score=103.64 Aligned_cols=109 Identities=19% Similarity=0.272 Sum_probs=73.7
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 499 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 499 (899)
+++|+|+||||||+||.+|+..+...+.+++.++.+++....... +.. . .. ....+...+. ...+|+|||+
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~--~~~-~---~~-~~~~~l~~l~--~~dlLvIDDi 171 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDT--FSN-S---ET-SEEQLLNDLS--NVDLLVIDEI 171 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHH--Hhh-c---cc-cHHHHHHHhc--cCCEEEEeCC
Confidence 699999999999999999999997778888888877765432111 000 0 00 1112333333 3469999999
Q ss_pred cccCH--HHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhh
Q psy2887 500 EKANS--DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKE 547 (899)
Q Consensus 500 d~~~~--~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~ 547 (899)
+.... .....|.++++... ..+.-+|+|||...+.+..
T Consensus 172 g~~~~s~~~~~~l~~Ii~~Ry----------~~~~~tiitSNl~~~~l~~ 211 (244)
T PRK07952 172 GVQTESRYEKVIINQIVDRRS----------SSKRPTGMLTNSNMEEMTK 211 (244)
T ss_pred CCCCCCHHHHHHHHHHHHHHH----------hCCCCEEEeCCCCHHHHHH
Confidence 86543 35567888888521 1345689999998876544
No 424
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=3.6e-08 Score=105.18 Aligned_cols=139 Identities=14% Similarity=0.144 Sum_probs=98.8
Q ss_pred CCCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCC-------------ccCCCeEEEEehhhhhcCcccCchHHHHHHHH
Q psy2887 10 FYFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPN-------------SLLSKKILLLDIALLLAGTKYRGEFEDRLKKI 76 (899)
Q Consensus 10 ~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~-------------~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~ 76 (899)
.+-+..+||+||.|+||+++|+.+|+.+...+.+. .-...+++.+.... .++.. ..+.++++
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~---~~~~I--~vdqiR~l 96 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK---EGKSI--TVEQIRQC 96 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc---CCCcC--CHHHHHHH
Confidence 45555789999999999999999999886533110 01122344443211 01111 23346666
Q ss_pred HHHHHh---cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhcccccc
Q psy2887 77 LKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKIL 151 (899)
Q Consensus 77 ~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~ 151 (899)
.+.+.. .++.-|++||++|.|.. .+.|.|+..+|+ .++++|..|+.++ .+-|.++||+..+.
T Consensus 97 ~~~~~~~~~~~~~kV~iI~~ae~m~~--------~AaNaLLKtLEEPp~~t~fiL~t~~~~-----~lLpTI~SRCq~~~ 163 (319)
T PRK06090 97 NRLAQESSQLNGYRLFVIEPADAMNE--------SASNALLKTLEEPAPNCLFLLVTHNQK-----RLLPTIVSRCQQWV 163 (319)
T ss_pred HHHHhhCcccCCceEEEecchhhhCH--------HHHHHHHHHhcCCCCCeEEEEEECChh-----hChHHHHhcceeEe
Confidence 555432 23456999999999964 788999999985 4688888888888 88999999999999
Q ss_pred ccCCCHHHHHHHHHh
Q psy2887 152 VEEPDIEETISILRG 166 (899)
Q Consensus 152 l~~p~~~e~~~il~~ 166 (899)
|++|+.++..++|..
T Consensus 164 ~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 164 VTPPSTAQAMQWLKG 178 (319)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999888863
No 425
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.82 E-value=2.8e-08 Score=96.30 Aligned_cols=128 Identities=18% Similarity=0.173 Sum_probs=83.7
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCc-------------cCCCeEEEEehhhhhcCcccCchHHHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNS-------------LLSKKILLLDIALLLAGTKYRGEFEDRLKKIL 77 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~-------------l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~ 77 (899)
+-+..+||+||+|+||+++|..+|+.+........ .....++.++..... . .-..+.++.+.
T Consensus 17 ~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~---~--~i~i~~ir~i~ 91 (162)
T PF13177_consen 17 RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK---K--SIKIDQIREII 91 (162)
T ss_dssp C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS---S--SBSHHHHHHHH
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc---c--hhhHHHHHHHH
Confidence 33445799999999999999999998855332110 223445545432210 0 11224566666
Q ss_pred HHHHh---cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC--ceEEEEecChhHHHHhhhcCHHHHhccccccc
Q psy2887 78 KEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG--ELHCIGATTLNEYRQYIEKDAAFERRFQKILV 152 (899)
Q Consensus 78 ~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~--~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l 152 (899)
..+.. .+..-|++|||+|.|.. +++|+|+..||+. .+++|.+|+... .+-|.+++|+..+.|
T Consensus 92 ~~~~~~~~~~~~KviiI~~ad~l~~--------~a~NaLLK~LEepp~~~~fiL~t~~~~-----~il~TI~SRc~~i~~ 158 (162)
T PF13177_consen 92 EFLSLSPSEGKYKVIIIDEADKLTE--------EAQNALLKTLEEPPENTYFILITNNPS-----KILPTIRSRCQVIRF 158 (162)
T ss_dssp HHCTSS-TTSSSEEEEEETGGGS-H--------HHHHHHHHHHHSTTTTEEEEEEES-GG-----GS-HHHHTTSEEEEE
T ss_pred HHHHHHHhcCCceEEEeehHhhhhH--------HHHHHHHHHhcCCCCCEEEEEEECChH-----HChHHHHhhceEEec
Confidence 66542 23467999999999964 7899999999864 788999999888 899999999998888
Q ss_pred cCCC
Q psy2887 153 EEPD 156 (899)
Q Consensus 153 ~~p~ 156 (899)
++++
T Consensus 159 ~~ls 162 (162)
T PF13177_consen 159 RPLS 162 (162)
T ss_dssp ----
T ss_pred CCCC
Confidence 7654
No 426
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.81 E-value=2.4e-08 Score=103.89 Aligned_cols=111 Identities=22% Similarity=0.353 Sum_probs=78.4
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 499 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 499 (899)
+++|+||||||||+||-+|++.+...+.++..+..+++...-..+.-- | .....+...+. ...||||||+
T Consensus 107 nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~-------~-~~~~~l~~~l~--~~dlLIiDDl 176 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDE-------G-RLEEKLLRELK--KVDLLIIDDI 176 (254)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhc-------C-chHHHHHHHhh--cCCEEEEecc
Confidence 699999999999999999999999778899999999887653222110 0 01112333333 3459999999
Q ss_pred cc--cCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcC
Q psy2887 500 EK--ANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKG 551 (899)
Q Consensus 500 d~--~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~ 551 (899)
.. ..+...+.++++|.... .+... |+|||.+...+.+..+.
T Consensus 177 G~~~~~~~~~~~~~q~I~~r~----------~~~~~-~~tsN~~~~~~~~~~~~ 219 (254)
T COG1484 177 GYEPFSQEEADLLFQLISRRY----------ESRSL-IITSNLSFGEWDELFGD 219 (254)
T ss_pred cCccCCHHHHHHHHHHHHHHH----------hhccc-eeecCCChHHHHhhccC
Confidence 76 55667788888887521 12333 99999999887775543
No 427
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.81 E-value=2.3e-07 Score=99.00 Aligned_cols=174 Identities=15% Similarity=0.153 Sum_probs=98.6
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccccccc---chhhccCCCCCccccccc---chhhHH----HHhC
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKH---SISRLIGAPPGYIGYEEG---GYLTEI----VRRK 489 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~---~~~~l~g~~~~~~g~~~~---~~l~~~----~~~~ 489 (899)
.++++||+|+|||++++.+++.+......+..+..+...... .+...+|.+.. +.... +.+... ....
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~--~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETE--GRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCC--CCCHHHHHHHHHHHHHHHHhCC
Confidence 589999999999999999999873211111111111111111 11223343221 11111 122222 2344
Q ss_pred CCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCC
Q psy2887 490 PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFR 569 (899)
Q Consensus 490 ~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 569 (899)
...||+|||++.+++...+.|..+.+-.. + ......||++...... . .+...-.
T Consensus 123 ~~~vliiDe~~~l~~~~~~~l~~l~~~~~--~------~~~~~~vvl~g~~~~~---~---------------~l~~~~~ 176 (269)
T TIGR03015 123 KRALLVVDEAQNLTPELLEELRMLSNFQT--D------NAKLLQIFLVGQPEFR---E---------------TLQSPQL 176 (269)
T ss_pred CCeEEEEECcccCCHHHHHHHHHHhCccc--C------CCCeEEEEEcCCHHHH---H---------------HHcCchh
Confidence 56799999999999988887765544210 0 1122344565543211 1 0111112
Q ss_pred hhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcc
Q psy2887 570 PEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIG 626 (899)
Q Consensus 570 ~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 626 (899)
..+.+|+...+.++|++.+++.+++...+... .......+++++++.|.+.+
T Consensus 177 ~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~-----g~~~~~~~~~~~~~~i~~~s 228 (269)
T TIGR03015 177 QQLRQRIIASCHLGPLDREETREYIEHRLERA-----GNRDAPVFSEGAFDAIHRFS 228 (269)
T ss_pred HHHHhheeeeeeCCCCCHHHHHHHHHHHHHHc-----CCCCCCCcCHHHHHHHHHHc
Confidence 24778887899999999999999988777432 11123468999999998733
No 428
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.81 E-value=5.3e-09 Score=109.98 Aligned_cols=141 Identities=17% Similarity=0.295 Sum_probs=87.7
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHH----------
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---------- 81 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~---------- 81 (899)
.+.++||+||+|||||++++.+-..+... ..-...+.++... +...++.+++...
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~-------~~~~~~~~~s~~T--------ts~~~q~~ie~~l~k~~~~~~gP 96 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSD-------KYLVITINFSAQT--------TSNQLQKIIESKLEKRRGRVYGP 96 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTC-------CEEEEEEES-TTH--------HHHHHHHCCCTTECECTTEEEEE
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCcc-------ccceeEeeccCCC--------CHHHHHHHHhhcEEcCCCCCCCC
Confidence 35589999999999999999866544111 1123334443322 1223444333221
Q ss_pred hcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC--------------ceEEEEecChhHHHHhhhcCHHHHhcc
Q psy2887 82 NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG--------------ELHCIGATTLNEYRQYIEKDAAFERRF 147 (899)
Q Consensus 82 ~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~--------------~v~vI~at~~~~~~~~~~ld~al~~Rf 147 (899)
..++..|+||||+..-.. +..|++...+.|++.++.+ ++.+|+++++.. ....+++.|.|.|
T Consensus 97 ~~~k~lv~fiDDlN~p~~--d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~--Gr~~is~R~~r~f 172 (272)
T PF12775_consen 97 PGGKKLVLFIDDLNMPQP--DKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTG--GRNPISPRFLRHF 172 (272)
T ss_dssp ESSSEEEEEEETTT-S-----TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTT--T--SHHHHHHTTE
T ss_pred CCCcEEEEEecccCCCCC--CCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCC--CCCCCChHHhhhe
Confidence 113457999999996544 4567777788888888532 578899988753 2346899999999
Q ss_pred ccccccCCCHHHHHHHHHhhhhhh
Q psy2887 148 QKILVEEPDIEETISILRGLQKKY 171 (899)
Q Consensus 148 ~~i~l~~p~~~e~~~il~~~~~~~ 171 (899)
.++.++.|+.+....|+..++..+
T Consensus 173 ~i~~~~~p~~~sl~~If~~il~~~ 196 (272)
T PF12775_consen 173 NILNIPYPSDESLNTIFSSILQSH 196 (272)
T ss_dssp EEEE----TCCHHHHHHHHHHHHH
T ss_pred EEEEecCCChHHHHHHHHHHHhhh
Confidence 999999999999999988777653
No 429
>KOG0373|consensus
Probab=98.78 E-value=3e-08 Score=94.32 Aligned_cols=116 Identities=23% Similarity=0.354 Sum_probs=80.1
Q ss_pred CcccccccccccHHHHHHHHHHhhccCCccceeeccccCCCCceEehhHHHHHhcC----CccEEEccCChHhHHh----
Q psy2887 628 DLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMR----NYAKIVLGNHEIHLLD---- 699 (899)
Q Consensus 628 ~~~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~~~~l~~~~----~~~~~v~GNHe~~~l~---- 699 (899)
++.-..|||||.+-.|.++...-+ .-|....||.||+||||-.|+++..+++.++ .++..+|||||..-+-
T Consensus 46 tPVTvCGDIHGQFyDL~eLFrtgG-~vP~tnYiFmGDfVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEsRqitqVYG 124 (306)
T KOG0373|consen 46 TPVTVCGDIHGQFYDLLELFRTGG-QVPDTNYIFMGDFVDRGYYSLETFTLLLLLKARYPAKITLLRGNHESRQITQVYG 124 (306)
T ss_pred CCeeEeeccchhHHHHHHHHHhcC-CCCCcceEEeccccccccccHHHHHHHHHHhhcCCceeEEeeccchhhhhhhhhh
Confidence 455668999999777777775544 3467899999999999999999998888774 4688999999976543
Q ss_pred HhhhcccCchhchHHHhhCCcChHHHHHHHhcCCce-EEeCCEEEEeccccccc
Q psy2887 700 VLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLA-IYYKKYLMIHAGVAKQW 752 (899)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~-~~~~~~~~vHAg~~~~~ 752 (899)
++.......+......+ .-.-+.-|++. +..++++.||||+.|+.
T Consensus 125 FydECq~KYGnan~wky--------cckVFD~LtlaAiID~~vLCVHGGLSPdi 170 (306)
T KOG0373|consen 125 FYDECQNKYGNANVWKY--------CCKVFDFLTLAAIIDEKVLCVHGGLSPDI 170 (306)
T ss_pred hHHHHHhhcCCchHHHH--------HHHHHhhhhHHHHhcCcEEEEcCCCCccc
Confidence 33332222222222222 22333344444 34678999999999964
No 430
>PRK09183 transposase/IS protein; Provisional
Probab=98.78 E-value=7.1e-09 Score=108.57 Aligned_cols=107 Identities=21% Similarity=0.336 Sum_probs=72.6
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHH--hCCCEEEEEc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVR--RKPYSLILLD 497 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~--~~~~~vl~lD 497 (899)
+++|+||||||||+||.+++..+...+..+..+++.++...-..... . +.+...+. .....+++||
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~-----------~-~~~~~~~~~~~~~~dlLiiD 171 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQR-----------Q-GRYKTTLQRGVMAPRLLIID 171 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHH-----------C-CcHHHHHHHHhcCCCEEEEc
Confidence 69999999999999999999887777777777776665432111100 0 01111221 2345699999
Q ss_pred cccc--cCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhh
Q psy2887 498 EIEK--ANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEME 549 (899)
Q Consensus 498 Eid~--~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~ 549 (899)
|++. ......+.|+++++.. ..+.-+|+|||.++..+...+
T Consensus 172 dlg~~~~~~~~~~~lf~li~~r-----------~~~~s~iiTsn~~~~~w~~~~ 214 (259)
T PRK09183 172 EIGYLPFSQEEANLFFQVIAKR-----------YEKGSMILTSNLPFGQWDQTF 214 (259)
T ss_pred ccccCCCChHHHHHHHHHHHHH-----------HhcCcEEEecCCCHHHHHHHh
Confidence 9986 4456677899999752 122347999999998887754
No 431
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.76 E-value=4.2e-08 Score=93.14 Aligned_cols=129 Identities=22% Similarity=0.237 Sum_probs=75.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcC------------cccCchHHHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG------------TKYRGEFEDRLKKILKEI 80 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~------------~~~~g~~~~~l~~~~~~~ 80 (899)
+.+++|+||||||||++++.+|..+.... ..++.+++...... ...........+.++..+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-------GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC-------CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999883321 23666655433211 112233444566777777
Q ss_pred HhcCCCEEEEEccccccccCCCCCchhhH--HHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhcccc-cccc
Q psy2887 81 SNNQKDIIIFIDELHTMIGTGKVEGSIDA--GNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVE 153 (899)
Q Consensus 81 ~~~~~~~iL~iDEi~~l~~~~~~~~~~~~--~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~-i~l~ 153 (899)
.... +.+++|||++.+............ ..............+|+++|.. ....+..+..|++. +.+.
T Consensus 75 ~~~~-~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~ 145 (148)
T smart00382 75 RKLK-PDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDE----KDLGPALLRRRFDRRIVLL 145 (148)
T ss_pred HhcC-CCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCCC----ccCchhhhhhccceEEEec
Confidence 6433 689999999999763311000000 0011233345668888888851 11344555556654 4443
No 432
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.76 E-value=1.3e-07 Score=110.44 Aligned_cols=181 Identities=14% Similarity=0.118 Sum_probs=106.7
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHH--------HhcC
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEI--------SNNQ 84 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~--------~~~~ 84 (899)
-++|||.|+||||||++|+++++.+.. ..+++.+..+... ....|... +...+..- ....
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~--------~~pfv~i~~~~t~--d~L~G~id--l~~~~~~g~~~~~~G~L~~A 83 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPP--------IMPFVELPLGVTE--DRLIGGID--VEESLAGGQRVTQPGLLDEA 83 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCc--------CCCeEecCcccch--hhcccchh--hhhhhhcCcccCCCCCeeeC
Confidence 468999999999999999999987622 1234444421111 11222210 11100000 0012
Q ss_pred CCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC---------------ceEEEEecChhHHHHhhhcCHHHHhcccc
Q psy2887 85 KDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG---------------ELHCIGATTLNEYRQYIEKDAAFERRFQK 149 (899)
Q Consensus 85 ~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~---------------~v~vI~at~~~~~~~~~~ld~al~~Rf~~ 149 (899)
..++|||||++.+.+ ...+.|+..|+.+ .+.+|+++|+.+.. -.+.++|..||..
T Consensus 84 ~~GvL~lDEi~rl~~--------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~--g~L~~~LldRf~l 153 (589)
T TIGR02031 84 PRGVLYVDMANLLDD--------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGG--GGLPDHLLDRLAL 153 (589)
T ss_pred CCCcEeccchhhCCH--------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCcccc--CCCCHHHHHhccC
Confidence 245999999999965 5667788877544 36889888876422 2688999999986
Q ss_pred -ccc-cCCCHHHHHHHHHhhhhhh-------------------hcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHH
Q psy2887 150 -ILV-EEPDIEETISILRGLQKKY-------------------EVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLI 208 (899)
Q Consensus 150 -i~l-~~p~~~e~~~il~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll 208 (899)
|.+ ..|+.++|.+|++.....+ .....+.++++++.+++.++-..-. .-+...+.++
T Consensus 154 ~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv--~s~Ra~i~~~ 231 (589)
T TIGR02031 154 HVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGI--SGHRADLFAV 231 (589)
T ss_pred eeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCC--CCccHHHHHH
Confidence 554 4557788888887654221 1123466777777777776643211 1133444455
Q ss_pred HHHHHhhhh
Q psy2887 209 DEAAAKIKI 217 (899)
Q Consensus 209 ~~a~~~~~~ 217 (899)
..|.+.+.+
T Consensus 232 r~ArA~Aal 240 (589)
T TIGR02031 232 RAAKAHAAL 240 (589)
T ss_pred HHHHHHHHH
Confidence 444444443
No 433
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.76 E-value=1.2e-07 Score=100.54 Aligned_cols=152 Identities=14% Similarity=0.144 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcc
Q psy2887 395 EAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYI 474 (899)
Q Consensus 395 ~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 474 (899)
.+++.+.+.+...+. .+.+||+|+.|+||+++|+.+++.++.....- ++... ...... ++-...+.+
T Consensus 3 ~~~~~l~~~i~~~~l--------~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~--~~~~~--~p~n~~-~~d~~g~~i 69 (299)
T PRK07132 3 NWIKFLDNSATQNKI--------SHSFLLKSNYNEDIDEKILYFLNKFNNLQITN--LNEQE--LPANII-LFDIFDKDL 69 (299)
T ss_pred hHHHHHHHHHHhCCC--------CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCC--CCCCC--CCcceE-EeccCCCcC
Confidence 356667777765432 23688999999999999999999984321000 00000 000000 010000112
Q ss_pred cccccchhhHHHHh-----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhh
Q psy2887 475 GYEEGGYLTEIVRR-----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEME 549 (899)
Q Consensus 475 g~~~~~~l~~~~~~-----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~ 549 (899)
+.++.+.+.+.+.. ++..|++||++|++....+|.|++.||+ +..++++|++|+...
T Consensus 70 ~vd~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEE-----------Pp~~t~~il~~~~~~------- 131 (299)
T PRK07132 70 SKSEFLSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEE-----------PPKDTYFLLTTKNIN------- 131 (299)
T ss_pred CHHHHHHHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhC-----------CCCCeEEEEEeCChH-------
Confidence 22222333333321 3567999999999999999999999998 668889998887332
Q ss_pred cCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHH
Q psy2887 550 KGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN 595 (899)
Q Consensus 550 ~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~ 595 (899)
.+-|.+.+|| .++.|.|++.+++.+.+.
T Consensus 132 -----------------kll~TI~SRc-~~~~f~~l~~~~l~~~l~ 159 (299)
T PRK07132 132 -----------------KVLPTIVSRC-QVFNVKEPDQQKILAKLL 159 (299)
T ss_pred -----------------hChHHHHhCe-EEEECCCCCHHHHHHHHH
Confidence 2455589999 899999999999887653
No 434
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=1.1e-07 Score=102.74 Aligned_cols=143 Identities=19% Similarity=0.182 Sum_probs=97.4
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCC-----CC----------ccCCCeEEEEehhhh--hcCcccCchHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEV-----PN----------SLLSKKILLLDIALL--LAGTKYRGEFEDRL 73 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~-----p~----------~l~~~~~~~~~~~~l--~~~~~~~g~~~~~l 73 (899)
+-+..+||+||+|+|||++|+.+|+.+..... |. .-....++.+....- ..|.....-..+.+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 44556899999999999999999998853211 10 011234555543210 00100001134467
Q ss_pred HHHHHHHHh---cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC--ceEEEEecChhHHHHhhhcCHHHHhccc
Q psy2887 74 KKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG--ELHCIGATTLNEYRQYIEKDAAFERRFQ 148 (899)
Q Consensus 74 ~~~~~~~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~--~v~vI~at~~~~~~~~~~ld~al~~Rf~ 148 (899)
+++.+.+.. .++.-|++||+++.|.. .+.+.|+..++.. ...+|.+|...+ .+.+.+.+||.
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~--------~a~naLLk~LEep~~~~~~Ilvth~~~-----~ll~ti~SRc~ 165 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNL--------QAANSLLKVLEEPPPQVVFLLVSHAAD-----KVLPTIKSRCR 165 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCH--------HHHHHHHHHHHhCcCCCEEEEEeCChH-----hChHHHHHHhh
Confidence 777777652 23456999999999954 6777888888753 567777888877 78899999999
Q ss_pred cccccCCCHHHHHHHHHh
Q psy2887 149 KILVEEPDIEETISILRG 166 (899)
Q Consensus 149 ~i~l~~p~~~e~~~il~~ 166 (899)
.+.|++|+.++..++|..
T Consensus 166 ~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 166 KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred hhcCCCCCHHHHHHHHHh
Confidence 999999999998888863
No 435
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.75 E-value=5.5e-08 Score=92.36 Aligned_cols=118 Identities=21% Similarity=0.256 Sum_probs=69.9
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhh---cc-CCCCCcccccccchhhHHHHhCCCEEEE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISR---LI-GAPPGYIGYEEGGYLTEIVRRKPYSLIL 495 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~---l~-g~~~~~~g~~~~~~l~~~~~~~~~~vl~ 495 (899)
+++|+||||||||++++.++..+......++.++++.......... .. .......+......+...++...+.+|+
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vii 83 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLI 83 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 6999999999999999999999954433588888776544322110 00 0111111122223455556665668999
Q ss_pred EccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCC
Q psy2887 496 LDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNL 540 (899)
Q Consensus 496 lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~ 540 (899)
+||++.+.............. ...........+..+|+++|.
T Consensus 84 iDei~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 84 LDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred EECCcccCCHHHHHHHHhhhh---hHHHHHHHhcCCCEEEEEeCC
Confidence 999999988766655432100 000000012356778888884
No 436
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.73 E-value=6.6e-08 Score=109.86 Aligned_cols=133 Identities=17% Similarity=0.170 Sum_probs=77.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCc------------------cCCCeEEEEehhhhhcCcccCchHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNS------------------LLSKKILLLDIALLLAGTKYRGEFEDRLK 74 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~------------------l~~~~~~~~~~~~l~~~~~~~g~~~~~l~ 74 (899)
..|++|+||||||||++++.++..+........ ....++.....+... ....|.....-.
T Consensus 211 g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~--~~~~ggg~~~~p 288 (499)
T TIGR00368 211 GHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASK--PALVGGGPIPLP 288 (499)
T ss_pred CCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCccccccccch--hhhhCCccccch
Confidence 458999999999999999999976532110000 111222221111100 000000000001
Q ss_pred HHHHHHHhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC---------------ceEEEEecChhHHHH----
Q psy2887 75 KILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG---------------ELHCIGATTLNEYRQ---- 135 (899)
Q Consensus 75 ~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~---------------~v~vI~at~~~~~~~---- 135 (899)
..+..+ .+++|||||++.+.. .+.+.|.+.|+.+ .+.+|+++|+.++..
T Consensus 289 G~i~lA----~~GvLfLDEi~e~~~--------~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~ 356 (499)
T TIGR00368 289 GEISLA----HNGVLFLDELPEFKR--------SVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGK 356 (499)
T ss_pred hhhhcc----CCCeEecCChhhCCH--------HHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCC
Confidence 112222 246999999998753 6677888877543 468999999753211
Q ss_pred --------------hhhcCHHHHhcccc-ccccCCCHHH
Q psy2887 136 --------------YIEKDAAFERRFQK-ILVEEPDIEE 159 (899)
Q Consensus 136 --------------~~~ld~al~~Rf~~-i~l~~p~~~e 159 (899)
...+...|++||+. +.++.++..+
T Consensus 357 ~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~ 395 (499)
T TIGR00368 357 NTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEK 395 (499)
T ss_pred cccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHH
Confidence 22588999999996 7888776553
No 437
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.73 E-value=7.6e-08 Score=102.89 Aligned_cols=109 Identities=23% Similarity=0.274 Sum_probs=74.2
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 499 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 499 (899)
+++|+||+|||||+||.++|+.+...+.++..+.++++....... ++. .........+.. ..+|+|||+
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~--~~~-------~~~~~~l~~l~~--~dlLiIDDi 226 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNS--ISD-------GSVKEKIDAVKE--APVLMLDDI 226 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHH--Hhc-------CcHHHHHHHhcC--CCEEEEecC
Confidence 699999999999999999999998888888888888775542211 111 011123333443 359999999
Q ss_pred c--ccCHHHHHHHHH-hhcCCceecCCCceEecCCeEEEEecCCChhhhhhhh
Q psy2887 500 E--KANSDVFNILLQ-ILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEME 549 (899)
Q Consensus 500 d--~~~~~~~~~Ll~-~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~ 549 (899)
. .+.+.+.+.++. +++.. + ..+.-.|+|||...+.+....
T Consensus 227 G~e~~s~~~~~~ll~~Il~~R-~---------~~~~~ti~TSNl~~~el~~~~ 269 (306)
T PRK08939 227 GAEQMSSWVRDEVLGVILQYR-M---------QEELPTFFTSNFDFDELEHHL 269 (306)
T ss_pred CCccccHHHHHHHHHHHHHHH-H---------HCCCeEEEECCCCHHHHHHHH
Confidence 6 555666655555 44531 1 134568999999998887754
No 438
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.73 E-value=5.9e-09 Score=102.41 Aligned_cols=104 Identities=25% Similarity=0.330 Sum_probs=53.2
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccC------------------CCeEEEEeh----hhhhcCcc--cCch
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLL------------------SKKILLLDI----ALLLAGTK--YRGE 68 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~------------------~~~~~~~~~----~~l~~~~~--~~g~ 68 (899)
..|+||+||||||||++|+++...+..-...+.+. ..++..... ..+..|.. ..|+
T Consensus 22 ~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGe 101 (206)
T PF01078_consen 22 GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGE 101 (206)
T ss_dssp C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE---EEEE-TT--HHHHHEEGGGEEE-C
T ss_pred CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCH
Confidence 35999999999999999999998764321111111 111111110 11111111 0111
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC---------------ceEEEEecChhHH
Q psy2887 69 FEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG---------------ELHCIGATTLNEY 133 (899)
Q Consensus 69 ~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~---------------~v~vI~at~~~~~ 133 (899)
+...+ .+|||+||+-.+- ..+.+.|++.++.+ ++.+|+|+|+.++
T Consensus 102 -----------islAh-~GVLflDE~~ef~--------~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpC 161 (206)
T PF01078_consen 102 -----------ISLAH-RGVLFLDELNEFD--------RSVLDALRQPLEDGEVTISRAGGSVTYPARFLLVAAMNPCPC 161 (206)
T ss_dssp -----------GGGGT-TSEEEECETTTS---------HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEEE-S---
T ss_pred -----------HHHhc-CCEEEechhhhcC--------HHHHHHHHHHHHCCeEEEEECCceEEEecccEEEEEeccccc
Confidence 11112 4599999999874 37888999999765 4589999998776
Q ss_pred HHh
Q psy2887 134 RQY 136 (899)
Q Consensus 134 ~~~ 136 (899)
..+
T Consensus 162 G~~ 164 (206)
T PF01078_consen 162 GYY 164 (206)
T ss_dssp ---
T ss_pred ccc
Confidence 543
No 439
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.72 E-value=4.8e-08 Score=94.80 Aligned_cols=61 Identities=21% Similarity=0.183 Sum_probs=48.4
Q ss_pred cccccccccHHHHHHHHHHhhccCCccceeeccccCCCCceEehhHHHHHhcCCccEEEccCChHh
Q psy2887 631 YGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIH 696 (899)
Q Consensus 631 ~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~~~~l~~~~~~~~~v~GNHe~~ 696 (899)
..++|+|+...+++.+++.+......|.++++||++ +.++++++.+....+.+|+||||..
T Consensus 4 ~viSD~H~~~~~~~~~~~~~~~~~~~d~ii~~GD~~-----~~~~~~~l~~~~~~~~~V~GN~D~~ 64 (158)
T TIGR00040 4 LVISDTHGPLRATELPVELFNLESNVDLVIHAGDLT-----SPFVLKEFEDLAAKVIAVRGNNDGE 64 (158)
T ss_pred EEEecccCCcchhHhHHHHHhhccCCCEEEEcCCCC-----CHHHHHHHHHhCCceEEEccCCCch
Confidence 457999999887777777666554669999999998 3568888877655689999999974
No 440
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.72 E-value=6.9e-08 Score=112.93 Aligned_cols=157 Identities=18% Similarity=0.171 Sum_probs=101.0
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHH----------
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEI---------- 80 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~---------- 80 (899)
.+..+|||+|++|||||++|++|...... .+.+++.++|..+... ..+ ..+|...
T Consensus 217 ~~~~pvli~Ge~GtGK~~lA~~ih~~s~r-------~~~pfv~i~c~~~~~~-----~~~---~~lfg~~~~~~~~~~~~ 281 (534)
T TIGR01817 217 RSNSTVLLRGESGTGKELIAKAIHYLSPR-------AKRPFVKVNCAALSET-----LLE---SELFGHEKGAFTGAIAQ 281 (534)
T ss_pred CcCCCEEEECCCCccHHHHHHHHHHhCCC-------CCCCeEEeecCCCCHH-----HHH---HHHcCCCCCccCCCCcC
Confidence 35668999999999999999999986532 2668999998765310 000 1111100
Q ss_pred ----HhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC-------------ceEEEEecChhHH--HHhhhcCH
Q psy2887 81 ----SNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCIGATTLNEY--RQYIEKDA 141 (899)
Q Consensus 81 ----~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~-------------~v~vI~at~~~~~--~~~~~ld~ 141 (899)
.....+++|||||++.|.. ..+..|...++.+ ++.+|++|+.... ...-...+
T Consensus 282 ~~g~~~~a~~GtL~ldei~~L~~--------~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~ 353 (534)
T TIGR01817 282 RKGRFELADGGTLFLDEIGEISP--------AFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRA 353 (534)
T ss_pred CCCcccccCCCeEEEechhhCCH--------HHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCH
Confidence 0012356899999999965 4556677777543 3788998876531 11223567
Q ss_pred HHHhcccc--ccccCCC--HHHHHHHHHhhhhhhhccc--CCCCCHHHHHHHHhh
Q psy2887 142 AFERRFQK--ILVEEPD--IEETISILRGLQKKYEVHH--GVEITDPAIVAASEL 190 (899)
Q Consensus 142 al~~Rf~~--i~l~~p~--~~e~~~il~~~~~~~~~~~--~~~~~~~~~~~~~~~ 190 (899)
.|..|+.. |.+|+.. .++...+++.++.++.... .+.+++++++.+...
T Consensus 354 ~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~ 408 (534)
T TIGR01817 354 DLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSC 408 (534)
T ss_pred HHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhC
Confidence 78888876 4455554 3555567777777654322 267999999887655
No 441
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.72 E-value=1.6e-07 Score=102.06 Aligned_cols=160 Identities=18% Similarity=0.156 Sum_probs=98.2
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcC---cc--------cCchHHHHHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG---TK--------YRGEFEDRLKKILKE 79 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~---~~--------~~g~~~~~l~~~~~~ 79 (899)
+...+|||+|++||||+++|+++...... .+.+++.++|..+... .. +.|..... ...+..
T Consensus 27 ~~~~pVlI~GE~GtGK~~lA~~iH~~s~r-------~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~-~g~l~~ 98 (326)
T PRK11608 27 PLDKPVLIIGERGTGKELIASRLHYLSSR-------WQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRH-PGRFER 98 (326)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHhCCc-------cCCCeEEEeCCCCCHHHHHHHHccccccccCCccccc-CCchhc
Confidence 45668999999999999999999864421 2568899998765311 00 00110000 112222
Q ss_pred HHhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC-------------ceEEEEecChhHH--HHhhhcCHHHH
Q psy2887 80 ISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCIGATTLNEY--RQYIEKDAAFE 144 (899)
Q Consensus 80 ~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~-------------~v~vI~at~~~~~--~~~~~ld~al~ 144 (899)
..++.|||||++.|.. ..+..|...++.+ ++.+|++|+..-. ...-...+.|.
T Consensus 99 ----a~gGtL~l~~i~~L~~--------~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~ 166 (326)
T PRK11608 99 ----ADGGTLFLDELATAPM--------LVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLL 166 (326)
T ss_pred ----cCCCeEEeCChhhCCH--------HHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHH
Confidence 2355899999999965 4555666666432 4788888876431 12224567888
Q ss_pred hccccccccCCCH----HHHHHHHHhhhhhhhcccC----CCCCHHHHHHHHhh
Q psy2887 145 RRFQKILVEEPDI----EETISILRGLQKKYEVHHG----VEITDPAIVAASEL 190 (899)
Q Consensus 145 ~Rf~~i~l~~p~~----~e~~~il~~~~~~~~~~~~----~~~~~~~~~~~~~~ 190 (899)
.||..+.+..|.. ++...+++.++.++....+ ..++++++..+...
T Consensus 167 ~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y 220 (326)
T PRK11608 167 DRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNY 220 (326)
T ss_pred HhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhC
Confidence 8997655555554 3444566666666543332 35888888877544
No 442
>KOG0478|consensus
Probab=98.70 E-value=1.1e-07 Score=106.00 Aligned_cols=183 Identities=13% Similarity=0.196 Sum_probs=105.6
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHHhhcC-CCC--CCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceE-Eecccc
Q psy2887 381 NIENLLCKRVVGQDEAISAVSNAIRRSRSG-LSD--AKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESII-RIDMSE 456 (899)
Q Consensus 381 ~l~~~l~~~v~gq~~~~~~l~~~i~~~~~~-~~~--~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~-~~~~~~ 456 (899)
.|.+.+-..|.|.+++++.+.-.+--.... ... .-+..-||||+|.||||||.+.+.+++.+- .... ...++.
T Consensus 422 lLa~SiAPsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~p---Rg~yTSGkGsS 498 (804)
T KOG0478|consen 422 LLARSIAPSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLP---RGVYTSGKGSS 498 (804)
T ss_pred HHHHhhchhhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCC---cceeecCCccc
Confidence 355666778999999999887777432211 001 112223899999999999999999999882 1111 111111
Q ss_pred cccccchhhccCCCCCccccccc-chh---hHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCC-CceEec-C
Q psy2887 457 FIEKHSISRLIGAPPGYIGYEEG-GYL---TEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNR-GRTINF-R 530 (899)
Q Consensus 457 ~~~~~~~~~l~g~~~~~~g~~~~-~~l---~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~-g~~~~~-~ 530 (899)
-+|-.. |+..+.. +++ ..++-.+.++|..|||+|||.....+.|+++||.-++.... |--..+ .
T Consensus 499 ---------avGLTa-yVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNA 568 (804)
T KOG0478|consen 499 ---------AVGLTA-YVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNA 568 (804)
T ss_pred ---------hhccee-eEEecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccc
Confidence 111111 2211111 111 23445566789999999999999999999999986665433 222111 3
Q ss_pred CeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHh-hcCChhHhhccCeEEE-ecCCCHH
Q psy2887 531 NTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVK-IYFRPEFINRIDDIIV-FRYLNRK 588 (899)
Q Consensus 531 ~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~l~~R~~~~i~-f~~l~~~ 588 (899)
++-|++++|.--..+... . ..++ =.++|.|++|||.++. +.+.++.
T Consensus 569 R~SVLAaANP~~skynp~----k--------~i~eNI~LpptLLSRFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 569 RCSVLAAANPIRSKYNPN----K--------SIIENINLPPTLLSRFDLIFLLLDKPDER 616 (804)
T ss_pred cceeeeeeccccccCCCC----C--------chhhccCCChhhhhhhcEEEEEecCcchh
Confidence 444666666311111110 0 0011 1478999999997544 4444443
No 443
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1.4e-07 Score=102.45 Aligned_cols=128 Identities=21% Similarity=0.276 Sum_probs=75.9
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCC-------------CCccCCCeEEE----------EehhhhhcCccc--Cc
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEV-------------PNSLLSKKILL----------LDIALLLAGTKY--RG 67 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~-------------p~~l~~~~~~~----------~~~~~l~~~~~~--~g 67 (899)
.-|+||+||||||||.+|+.+...+..-.. +....+++++. .....+..|+.. .|
T Consensus 198 gHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PG 277 (490)
T COG0606 198 GHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPG 277 (490)
T ss_pred CCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCccceeCCccCCCccchHHHHhCCCCCCCCC
Confidence 348999999999999999988875532111 11111111111 112222222211 11
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCCc---------------eEEEEecChhH
Q psy2887 68 EFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGE---------------LHCIGATTLNE 132 (899)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~~---------------v~vI~at~~~~ 132 (899)
+. . ....+|||+||+-..- ..+.+.|.+-||.+. +++|++||+..
T Consensus 278 eI-----------s-LAH~GVLFLDElpef~--------~~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcp 337 (490)
T COG0606 278 EI-----------S-LAHNGVLFLDELPEFK--------RSILEALREPLENGKIIISRAGSKVTYPARFQLVAAMNPCP 337 (490)
T ss_pred ce-----------e-eecCCEEEeeccchhh--------HHHHHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCC
Confidence 11 1 1124599999998763 378889999998764 46788888654
Q ss_pred HHH------------------hhhcCHHHHhcccc-ccccCCCHHHH
Q psy2887 133 YRQ------------------YIEKDAAFERRFQK-ILVEEPDIEET 160 (899)
Q Consensus 133 ~~~------------------~~~ld~al~~Rf~~-i~l~~p~~~e~ 160 (899)
+.. .-.+...|++|++. +.++.++..++
T Consensus 338 cG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e~ 384 (490)
T COG0606 338 CGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGEL 384 (490)
T ss_pred ccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHHh
Confidence 321 12356688999996 77877764443
No 444
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.69 E-value=2.3e-07 Score=109.77 Aligned_cols=137 Identities=21% Similarity=0.322 Sum_probs=84.1
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHcC----CC-----CCc----------------cCCCeEEEEehhhhhcCcccCch
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRIING----EV-----PNS----------------LLSKKILLLDIALLLAGTKYRGE 68 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l~~~----~~-----p~~----------------l~~~~~~~~~~~~l~~~~~~~g~ 68 (899)
++|||.|+||||||++|++|++.+..- +. |.. ....+++.+.++... ....|.
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~--~~l~G~ 103 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATE--DRVVGS 103 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcH--HHcCCc
Confidence 579999999999999999999887310 00 000 112344444333211 111121
Q ss_pred HHHHHHHHHHH--------HHhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC---------------ceEEE
Q psy2887 69 FEDRLKKILKE--------ISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG---------------ELHCI 125 (899)
Q Consensus 69 ~~~~l~~~~~~--------~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~---------------~v~vI 125 (899)
.. +...+.. .......+||||||++.+.. ...+.|+..|+.+ .+.+|
T Consensus 104 ~d--~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~--------~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lI 173 (633)
T TIGR02442 104 LD--IERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD--------HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLI 173 (633)
T ss_pred cc--HHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH--------HHHHHHHHHHhcCCEEEEECCceeeecCCeEEE
Confidence 10 1111110 00011245999999999965 5677888888654 37889
Q ss_pred EecChhHHHHhhhcCHHHHhcccc-ccccCCC-HHHHHHHHHh
Q psy2887 126 GATTLNEYRQYIEKDAAFERRFQK-ILVEEPD-IEETISILRG 166 (899)
Q Consensus 126 ~at~~~~~~~~~~ld~al~~Rf~~-i~l~~p~-~~e~~~il~~ 166 (899)
+++|+.+ ..+.++|..||.. |.++.+. .+++.++++.
T Consensus 174 at~np~e----g~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 174 GTMNPEE----GDLRPQLLDRFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred EecCCCC----CCCCHHHHhhcceEEEccCCCchHHHHHHHHH
Confidence 9888754 2578999999985 7777664 5777777764
No 445
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.68 E-value=2.6e-07 Score=109.14 Aligned_cols=144 Identities=15% Similarity=0.126 Sum_probs=88.8
Q ss_pred CCCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhc-CcccCchHHHHHHHHHHHHHhcCCCEE
Q psy2887 10 FYFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA-GTKYRGEFEDRLKKILKEISNNQKDII 88 (899)
Q Consensus 10 ~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~-~~~~~g~~~~~l~~~~~~~~~~~~~~i 88 (899)
.|...||||+|+||||||++|+.+++...... ...+.+...+.+..... -....|++.... ..+. ....++
T Consensus 489 iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~---ytsG~~~s~vgLTa~~~~~d~~tG~~~le~-GaLv----lAdgGt 560 (915)
T PTZ00111 489 FRGIINVLLCGDPGTAKSQLLHYTHLLSPRSI---YTSGKSSSSVGLTASIKFNESDNGRAMIQP-GAVV----LANGGV 560 (915)
T ss_pred ccCCceEEEeCCCCccHHHHHHHHHHhCCccc---cCCCCCCccccccchhhhcccccCcccccC-CcEE----EcCCCe
Confidence 46677999999999999999999998543221 11122333332222110 000011111000 0111 122459
Q ss_pred EEEccccccccCCCCCchhhHHHhhhhhhcCC---------------ceEEEEecChhHHH--------HhhhcCHHHHh
Q psy2887 89 IFIDELHTMIGTGKVEGSIDAGNMLKPELSRG---------------ELHCIGATTLNEYR--------QYIEKDAAFER 145 (899)
Q Consensus 89 L~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~---------------~v~vI~at~~~~~~--------~~~~ld~al~~ 145 (899)
|+|||++.+.. .....|...|+.. ...||+|+|+..-+ ..+.++++|++
T Consensus 561 L~IDEidkms~--------~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS 632 (915)
T PTZ00111 561 CCIDELDKCHN--------ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT 632 (915)
T ss_pred EEecchhhCCH--------HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh
Confidence 99999999854 4445677777533 46899999986322 35678999999
Q ss_pred cccc--ccccCCCHHHHHHHHHhhhh
Q psy2887 146 RFQK--ILVEEPDIEETISILRGLQK 169 (899)
Q Consensus 146 Rf~~--i~l~~p~~~e~~~il~~~~~ 169 (899)
||+. +.++.|+.+.-..|.+.+++
T Consensus 633 RFDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 633 RFDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred hhcEEEEecCCCChHHHHHHHHHHHH
Confidence 9995 66889998877777666654
No 446
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.66 E-value=3.8e-07 Score=97.66 Aligned_cols=72 Identities=24% Similarity=0.316 Sum_probs=57.1
Q ss_pred CEEEEEccccccccCCCCCchhhHHHhhhhhhcCC---------------ceEEEEecChhHHHHhhhcCHHHHhcccc-
Q psy2887 86 DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG---------------ELHCIGATTLNEYRQYIEKDAAFERRFQK- 149 (899)
Q Consensus 86 ~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~---------------~v~vI~at~~~~~~~~~~ld~al~~Rf~~- 149 (899)
.+||+|||+..|.. .+++.|+..++.| ++++|+|+|+.+ -++-|.|+.||..
T Consensus 145 RGIlYvDEvnlL~d--------~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEe----GeLrpqLlDRfg~~ 212 (423)
T COG1239 145 RGILYVDEVNLLDD--------HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEE----GELRPQLLDRFGLE 212 (423)
T ss_pred CCEEEEeccccccH--------HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccc----cccchhhHhhhcce
Confidence 35999999999853 6788888888653 578999999985 4789999999986
Q ss_pred ccccCC-CHHHHHHHHHhhhh
Q psy2887 150 ILVEEP-DIEETISILRGLQK 169 (899)
Q Consensus 150 i~l~~p-~~~e~~~il~~~~~ 169 (899)
|.+..| +.+++++|.++-+.
T Consensus 213 v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 213 VDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred eeccCCCCHHHHHHHHHHHHH
Confidence 887776 47888888765443
No 447
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.66 E-value=4e-07 Score=101.80 Aligned_cols=187 Identities=24% Similarity=0.285 Sum_probs=115.5
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecc----ccccc-c--
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDM----SEFIE-K-- 460 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~----~~~~~-~-- 460 (899)
.+++|+++++++|...+.....++..++ + .++|.||||+|||+||+.|++.+-. .++..+.. +.+.. +
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~-~--IL~LvGPpG~GKSsLa~~la~~le~--~~~Y~~kg~~~~sP~~e~PL~ 150 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKK-Q--ILYLLGPVGGGKSSLAERLKSLMER--VPIYVLKANGERSPVNESPLG 150 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCC-c--eEEEecCCCCCchHHHHHHHHHHHh--CcceeecCCCCCCCCCCCCCC
Confidence 4688999999999999977776764433 2 6999999999999999999998821 24444433 11100 0
Q ss_pred ----c----chhhccCCCCC-----------------------------------c--cc-----------------ccc
Q psy2887 461 ----H----SISRLIGAPPG-----------------------------------Y--IG-----------------YEE 478 (899)
Q Consensus 461 ----~----~~~~l~g~~~~-----------------------------------~--~g-----------------~~~ 478 (899)
. .+...+|-+.. - +| ...
T Consensus 151 L~p~~~~~~~le~~~gi~~r~i~g~lsP~~r~rL~e~~Gd~~~~~V~r~~~S~~~riGIg~~eP~D~~nQD~s~L~G~vd 230 (644)
T PRK15455 151 LFDPDEDGPILEEEYGIPRRYLGTIMSPWAVKRLHEFGGDISKFRVVKVYPSILRQIAIAKTEPGDENNQDISSLVGKVD 230 (644)
T ss_pred CCChhhhHHHHHHHhCCCccccCCCCCHHHHHHHHHhCCCchheEEEEEeeccccceEEEecCCCCCCCCChhHhcccee
Confidence 0 00011111100 0 00 000
Q ss_pred cch-------------hhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCc-eEecCCeEEEEecCCChhh
Q psy2887 479 GGY-------------LTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGR-TINFRNTIIVMTSNLGSDK 544 (899)
Q Consensus 479 ~~~-------------l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~-~~~~~~~~iI~tsn~~~~~ 544 (899)
.+. +.+.+..+..|++=|=|+-|.+..++..||.+.++|.+.-..|. .++ -+.+||+.||-.
T Consensus 231 i~kl~~ys~~dp~aysf~G~L~~aNrGl~EFvEm~K~~~~~L~~LLtatQE~~i~~~~~~~~i~-~D~vIiaHsNE~--- 306 (644)
T PRK15455 231 IRKLEHYAQNDPDAYSYSGGLCRANQGLLEFVEMFKAPIKVLHPLLTATQEGNYNGTEGIGAIP-FDGIILAHSNES--- 306 (644)
T ss_pred HHhhhccCCCCCccccCCchhhhccCCcEeeHHHhcCcHHHHHHhcCCCccCcccCCCCcceec-cceeEEecCCHH---
Confidence 000 11112333346666668899999999999999999998655553 454 478889999932
Q ss_pred hhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCH-HHHHHHHHHHH
Q psy2887 545 IKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNR-KNILSIANIQL 598 (899)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~-~~~~~i~~~~l 598 (899)
..+.......+.+|++|+ .+|.++...+ .+=.+|-++.+
T Consensus 307 --------------E~~~F~~nk~nEA~~DRi-~~V~VPY~lr~~eE~kIYeKll 346 (644)
T PRK15455 307 --------------EWQTFRNNKNNEAFLDRI-YIVKVPYCLRVSEEIKIYEKLL 346 (644)
T ss_pred --------------HHHHHhcCccchhhhceE-EEEeCCccCChhHHHHHHHHHh
Confidence 122233456788899999 7888887655 33345544444
No 448
>PRK08116 hypothetical protein; Validated
Probab=98.65 E-value=1.4e-07 Score=99.21 Aligned_cols=130 Identities=18% Similarity=0.259 Sum_probs=71.8
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCc--ccCchHHHHHHHHHHHHHhcCCCEEEEE
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGT--KYRGEFEDRLKKILKEISNNQKDIIIFI 91 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~--~~~g~~~~~l~~~~~~~~~~~~~~iL~i 91 (899)
.+++|+|+||||||+||.++|+.+... +.+++.++...+...- .+.+........+++.+.. ..+|+|
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~-------~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~---~dlLvi 184 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK-------GVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVN---ADLLIL 184 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcC---CCEEEE
Confidence 359999999999999999999998654 4567777766554210 0111111112334444432 339999
Q ss_pred ccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhccc----cccccCCC
Q psy2887 92 DELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQ----KILVEEPD 156 (899)
Q Consensus 92 DEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~----~i~l~~p~ 156 (899)
||++....+. .....+.+++......+ ..+|.|||...-.-...++.++.+|+. .|.+.-++
T Consensus 185 DDlg~e~~t~--~~~~~l~~iin~r~~~~-~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d 250 (268)
T PRK08116 185 DDLGAERDTE--WAREKVYNIIDSRYRKG-LPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKS 250 (268)
T ss_pred ecccCCCCCH--HHHHHHHHHHHHHHHCC-CCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcC
Confidence 9997532211 11112233333333343 446666665532211125688888863 25566655
No 449
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.65 E-value=2e-07 Score=98.15 Aligned_cols=155 Identities=17% Similarity=0.309 Sum_probs=97.9
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 499 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 499 (899)
++||+||+|||||.+++.+-+.+.....-...++++.......+..++-..-. ...++.+. - ......|+|||++
T Consensus 35 pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~---k~~~~~~g-P-~~~k~lv~fiDDl 109 (272)
T PF12775_consen 35 PVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLE---KRRGRVYG-P-PGGKKLVLFIDDL 109 (272)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTEC---ECTTEEEE-E-ESSSEEEEEEETT
T ss_pred cEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEE---cCCCCCCC-C-CCCcEEEEEeccc
Confidence 79999999999999998877666333223456777766555444443322110 00011010 0 1223459999999
Q ss_pred cccCH------HHHHHHHHhhcCCceecCCC-ceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhH
Q psy2887 500 EKANS------DVFNILLQILDDGRLTDNRG-RTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEF 572 (899)
Q Consensus 500 d~~~~------~~~~~Ll~~le~g~~~~~~g-~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 572 (899)
....+ ...+.|.++|+.|-+.|... .-....++.+|++++.+.. +..+++.|
T Consensus 110 N~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~G---------------------r~~is~R~ 168 (272)
T PF12775_consen 110 NMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGG---------------------RNPISPRF 168 (272)
T ss_dssp T-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT-----------------------SHHHHH
T ss_pred CCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCC---------------------CCCCChHH
Confidence 75443 36788999999988888654 3356688889998885332 22356778
Q ss_pred hhccCeEEEecCCCHHHHHHHHHHHHHHH
Q psy2887 573 INRIDDIIVFRYLNRKNILSIANIQLNIL 601 (899)
Q Consensus 573 ~~R~~~~i~f~~l~~~~~~~i~~~~l~~~ 601 (899)
++.| .++.+.+++.+.+..|....+...
T Consensus 169 ~r~f-~i~~~~~p~~~sl~~If~~il~~~ 196 (272)
T PF12775_consen 169 LRHF-NILNIPYPSDESLNTIFSSILQSH 196 (272)
T ss_dssp HTTE-EEEE----TCCHHHHHHHHHHHHH
T ss_pred hhhe-EEEEecCCChHHHHHHHHHHHhhh
Confidence 9999 899999999999999998888654
No 450
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.65 E-value=2.4e-07 Score=107.11 Aligned_cols=175 Identities=13% Similarity=0.140 Sum_probs=111.6
Q ss_pred eEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccc--hhhHHHHhCCCEEEEE
Q psy2887 419 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGG--YLTEIVRRKPYSLILL 496 (899)
Q Consensus 419 ~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~--~l~~~~~~~~~~vl~l 496 (899)
+.+++.|++||||++++++++..+. ...+|+.+..+ .....++|.-.-...-..++ .-...+..+.++|||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp-~~~p~r~~p~~-----~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~l 99 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLP-AGTPLRRLPPG-----IADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVL 99 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcC-CCCCcccCCCC-----CcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEe
Confidence 4699999999999999999999982 23466544322 22334555421000000000 1123445566789999
Q ss_pred ccccccCHHHHHHHHHhhcCCceecC-CCceEecCC-eEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhh
Q psy2887 497 DEIEKANSDVFNILLQILDDGRLTDN-RGRTINFRN-TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN 574 (899)
Q Consensus 497 DEid~~~~~~~~~Ll~~le~g~~~~~-~g~~~~~~~-~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 574 (899)
||+..+++.+++.|++.|++|.++.. .|.++.+.. .++|+| ..+.+ ..+.+++.+++
T Consensus 100 De~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat-~~~~~--------------------~~~~L~~~lLD 158 (584)
T PRK13406 100 AMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVAL-DEGAE--------------------EDERAPAALAD 158 (584)
T ss_pred cCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEec-CCChh--------------------cccCCCHHhHh
Confidence 99999999999999999999988863 466665544 445554 22221 13568899999
Q ss_pred ccCeEEEecCCCHHHHHHH--HHHHHHHHHHHHHhcCcceeecHHHHHHHHh
Q psy2887 575 RIDDIIVFRYLNRKNILSI--ANIQLNILKNKLLKMNMDLKISKAALKKISN 624 (899)
Q Consensus 575 R~~~~i~f~~l~~~~~~~i--~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 624 (899)
||+..|.+.+++..+..+. ....+....+++. .+.++++++.++..
T Consensus 159 Rf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~----~v~v~~~~l~~i~~ 206 (584)
T PRK13406 159 RLAFHLDLDGLALRDAREIPIDADDIAAARARLP----AVGPPPEAIAALCA 206 (584)
T ss_pred heEEEEEcCCCChHHhcccCCCHHHHHHHHHHHc----cCCCCHHHHHHHHH
Confidence 9999999999887665421 1112222233331 36778888888765
No 451
>PRK06921 hypothetical protein; Provisional
Probab=98.64 E-value=5.4e-08 Score=102.15 Aligned_cols=105 Identities=16% Similarity=0.234 Sum_probs=69.4
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccC-CCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEcc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNN-EESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDE 498 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~-~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDE 498 (899)
+++|+||||||||+||.+||+.+... +..++.+...++....... + .........+. ...+|+|||
T Consensus 119 ~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~--~---------~~~~~~~~~~~--~~dlLiIDD 185 (266)
T PRK06921 119 SIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD--F---------DLLEAKLNRMK--KVEVLFIDD 185 (266)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH--H---------HHHHHHHHHhc--CCCEEEEec
Confidence 69999999999999999999999766 6777777765543321000 0 00011222232 345999999
Q ss_pred ccc-------cCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhh
Q psy2887 499 IEK-------ANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKE 547 (899)
Q Consensus 499 id~-------~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~ 547 (899)
++. .....++.|+.+++... ..+.-+|+|||..++.+..
T Consensus 186 l~~~~~g~e~~t~~~~~~lf~iin~R~----------~~~k~tIitsn~~~~el~~ 231 (266)
T PRK06921 186 LFKPVNGKPRATEWQIEQMYSVLNYRY----------LNHKPILISSELTIDELLD 231 (266)
T ss_pred cccccCCCccCCHHHHHHHHHHHHHHH----------HCCCCEEEECCCCHHHHhh
Confidence 943 45566778888888521 1223478999998886654
No 452
>PF13173 AAA_14: AAA domain
Probab=98.64 E-value=1.1e-07 Score=88.52 Aligned_cols=123 Identities=21% Similarity=0.267 Sum_probs=78.1
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEEcc
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDE 93 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDE 93 (899)
..++|+||.||||||+++.+++.+. ....++.+++........ ....+.+.+.+.. ..++.++||||
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~--------~~~~~~yi~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~i~iDE 69 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL--------PPENILYINFDDPRDRRL----ADPDLLEYFLELI-KPGKKYIFIDE 69 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc--------ccccceeeccCCHHHHHH----hhhhhHHHHHHhh-ccCCcEEEEeh
Confidence 4578999999999999999998873 134566676654331110 0000222222221 12567999999
Q ss_pred ccccccCCCCCchhhHHHhhhhhhcCC-ceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHHH
Q psy2887 94 LHTMIGTGKVEGSIDAGNMLKPELSRG-ELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEE 159 (899)
Q Consensus 94 i~~l~~~~~~~~~~~~~~~l~~~l~~~-~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e 159 (899)
++.+. +....++...+.+ .+.+|.|++....... .....+..|...+.+.+++..|
T Consensus 70 iq~~~---------~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~-~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 70 IQYLP---------DWEDALKFLVDNGPNIKIILTGSSSSLLSK-DIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred hhhhc---------cHHHHHHHHHHhccCceEEEEccchHHHhh-cccccCCCeEEEEEECCCCHHH
Confidence 99983 4555666666655 5677777665542211 4456677788888899988766
No 453
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.64 E-value=2.7e-07 Score=99.98 Aligned_cols=180 Identities=18% Similarity=0.243 Sum_probs=107.3
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcc-----------cCchHHHHHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTK-----------YRGEFEDRLKKILKE 79 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~-----------~~g~~~~~l~~~~~~ 79 (899)
....+||++|++||||+.+|++|....... .+.+++.++|..+..+.. +.| ....-..+|+.
T Consensus 99 p~~~~vLi~GetGtGKel~A~~iH~~s~r~------~~~PFI~~NCa~~~en~~~~eLFG~~kGaftG-a~~~k~Glfe~ 171 (403)
T COG1221 99 PSGLPVLIIGETGTGKELFARLIHALSARR------AEAPFIAFNCAAYSENLQEAELFGHEKGAFTG-AQGGKAGLFEQ 171 (403)
T ss_pred CCCCcEEEecCCCccHHHHHHHHHHhhhcc------cCCCEEEEEHHHhCcCHHHHHHhccccceeec-ccCCcCchhee
Confidence 345689999999999999999999433221 377899999987753221 112 01111223333
Q ss_pred HHhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC-------------ceEEEEecChhHHHHhhhcCHHHHhc
Q psy2887 80 ISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCIGATTLNEYRQYIEKDAAFERR 146 (899)
Q Consensus 80 ~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~-------------~v~vI~at~~~~~~~~~~ld~al~~R 146 (899)
| .+++||+||++.|.. .....|+.+++.+ +|.+|+|||...-..... ...|.+|
T Consensus 172 A----~GGtLfLDEI~~LP~--------~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~-g~dl~~r 238 (403)
T COG1221 172 A----NGGTLFLDEIHRLPP--------EGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLA-GADLTRR 238 (403)
T ss_pred c----CCCEEehhhhhhCCH--------hHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHHh-hcchhhh
Confidence 3 255999999999976 4555777777543 578999998764322221 1356665
Q ss_pred cccccccCCC----HHHHHHHHHhhhhhhhcccCCCCC---HHHHHHHHhhh-hhhcccCCCchhHHHHHHHHHHhhh
Q psy2887 147 FQKILVEEPD----IEETISILRGLQKKYEVHHGVEIT---DPAIVAASELS-YRYISDRFMPDKAIDLIDEAAAKIK 216 (899)
Q Consensus 147 f~~i~l~~p~----~~e~~~il~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~p~~~~~ll~~a~~~~~ 216 (899)
...+.+..|+ .+++..+++.++..+....+..+. ++++..+.... .+-+ ....+++..++....
T Consensus 239 l~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNi------rELkN~Ve~~~~~~~ 310 (403)
T COG1221 239 LNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNI------RELKNLVERAVAQAS 310 (403)
T ss_pred hcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcH------HHHHHHHHHHHHHhc
Confidence 5544444444 355556677788776655554333 34555443331 1111 245556666666553
No 454
>KOG2227|consensus
Probab=98.64 E-value=2.5e-07 Score=99.23 Aligned_cols=220 Identities=14% Similarity=0.185 Sum_probs=140.5
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccC--CCceEEecccccccccchh-
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN--EESIIRIDMSEFIEKHSIS- 464 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~--~~~~~~~~~~~~~~~~~~~- 464 (899)
..+.|.+.-+..+...+..+..+ ...+++.+.|-||||||.+...+-..+-.. ....++++|.++.....+.
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~-----~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLEL-----NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhc-----ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHH
Confidence 56788888888888888766533 223479999999999998887555444222 2244888998876654332
Q ss_pred hccCCC-CCccccccc----chhhHHHHhCC-CEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEec
Q psy2887 465 RLIGAP-PGYIGYEEG----GYLTEIVRRKP-YSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTS 538 (899)
Q Consensus 465 ~l~g~~-~~~~g~~~~----~~l~~~~~~~~-~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ts 538 (899)
.+++.- ...++...+ ..+........ .=|+++||+|.+...-+..|+.+++=-. .+.++.++|..+
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~--------lp~sr~iLiGiA 296 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPK--------LPNSRIILIGIA 296 (529)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhccc--------CCcceeeeeeeh
Confidence 222211 012222222 22333333333 4499999999999888888887776321 234556666666
Q ss_pred CCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhcc---CeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeec
Q psy2887 539 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRI---DDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKIS 615 (899)
Q Consensus 539 n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~---~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 615 (899)
|.-. +.++|-|.|..|+ +.++.|+||+.+++.+|+...+.. .. ...+-
T Consensus 297 NslD---------------------lTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~-------~~-t~~~~ 347 (529)
T KOG2227|consen 297 NSLD---------------------LTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSE-------ES-TSIFL 347 (529)
T ss_pred hhhh---------------------HHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhc-------cc-ccccc
Confidence 6311 2345556666655 369999999999999998877743 22 23444
Q ss_pred HHHHHHHHhcccCcccccccccccHHHHHHHHHHhhc
Q psy2887 616 KAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHK 652 (899)
Q Consensus 616 ~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l~~~~~ 652 (899)
+.+++.+++... ..-||++..++-+++.++-+..
T Consensus 348 ~~Aie~~ArKva---a~SGDlRkaLdv~R~aiEI~E~ 381 (529)
T KOG2227|consen 348 NAAIELCARKVA---APSGDLRKALDVCRRAIEIAEI 381 (529)
T ss_pred hHHHHHHHHHhc---cCchhHHHHHHHHHHHHHHHHH
Confidence 578888876443 3359999999888888765543
No 455
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.62 E-value=2.9e-07 Score=105.50 Aligned_cols=177 Identities=12% Similarity=0.140 Sum_probs=105.7
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcC---c--------ccCchHHHHHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG---T--------KYRGEFEDRLKKILKE 79 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~---~--------~~~g~~~~~l~~~~~~ 79 (899)
.+..+|||+|++||||+++|+++...... .+.+++.+||..+... + .+.|.....-..+|+.
T Consensus 233 ~~~~pVLI~GE~GTGKe~lA~~IH~~S~r-------~~~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~ 305 (526)
T TIGR02329 233 RSDATVLILGESGTGKELVAQAIHQLSGR-------RDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEA 305 (526)
T ss_pred CCCCcEEEECCCCcCHHHHHHHHHHhcCc-------CCCCEEEeccccCChhHHHHHhcCCcccccccccccccccchhh
Confidence 45568999999999999999999875422 2678999998765310 0 0001000001123333
Q ss_pred HHhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC-------------ceEEEEecChhHHH--HhhhcCHHHH
Q psy2887 80 ISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCIGATTLNEYR--QYIEKDAAFE 144 (899)
Q Consensus 80 ~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~-------------~v~vI~at~~~~~~--~~~~ld~al~ 144 (899)
+ .++.|||||++.|.. ..+..|+..++.+ ++.+|++|+..-.. ..-.+.+.|.
T Consensus 306 A----~gGTLfLdeI~~Lp~--------~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~ 373 (526)
T TIGR02329 306 A----HRGTLFLDEIGEMPL--------PLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLF 373 (526)
T ss_pred c----CCceEEecChHhCCH--------HHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHH
Confidence 3 245899999999965 5566777777543 34789888765321 1123445666
Q ss_pred hccccccccCCCH----HHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHH
Q psy2887 145 RRFQKILVEEPDI----EETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDL 207 (899)
Q Consensus 145 ~Rf~~i~l~~p~~----~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l 207 (899)
.|+..+.+..|.. ++...+++.++.++....++.++++++..+.... ..+....+|+...+|
T Consensus 374 ~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~-~~L~~y~WPGNvrEL 439 (526)
T TIGR02329 374 YRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVA-DPLQRYPWPGNVREL 439 (526)
T ss_pred HhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHH-HHHHhCCCCchHHHH
Confidence 6887655555543 4455566777777655556778888877633221 112233455554443
No 456
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.61 E-value=7.9e-08 Score=105.61 Aligned_cols=160 Identities=18% Similarity=0.218 Sum_probs=103.7
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhc--------C---cccCchHHHHHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA--------G---TKYRGEFEDRLKKILKE 79 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~--------~---~~~~g~~~~~l~~~~~~ 79 (899)
++..+|||.|++||||..+|+++.+..... +.+++.++|..+.. | +.+.|....--..+|+.
T Consensus 266 ~tdstVLi~GESGTGKElfA~~IH~~S~R~-------~~PFIaiNCaAiPe~LlESELFGye~GAFTGA~~~GK~GlfE~ 338 (560)
T COG3829 266 KTDSTVLILGESGTGKELFARAIHNLSPRA-------NGPFIAINCAAIPETLLESELFGYEKGAFTGASKGGKPGLFEL 338 (560)
T ss_pred CCCCcEEEecCCCccHHHHHHHHHhcCccc-------CCCeEEEecccCCHHHHHHHHhCcCCccccccccCCCCcceee
Confidence 567799999999999999999998866443 77899999986631 1 12233222112334444
Q ss_pred HHhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC-------------ceEEEEecChhHHHHhhh---cCHHH
Q psy2887 80 ISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCIGATTLNEYRQYIE---KDAAF 143 (899)
Q Consensus 80 ~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~-------------~v~vI~at~~~~~~~~~~---ld~al 143 (899)
|. .+-||+|||..|.. ..+..|+..|+.+ +|.+|+|||...- +.++ .-..|
T Consensus 339 A~----gGTLFLDEIgempl--------~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~-~~i~~G~FReDL 405 (560)
T COG3829 339 AN----GGTLFLDEIGEMPL--------PLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLE-KMIAEGTFREDL 405 (560)
T ss_pred cc----CCeEEehhhccCCH--------HHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHH-HHHhcCcchhhh
Confidence 42 34799999999864 5666788777532 6899999998642 1211 22334
Q ss_pred HhccccccccCCC----HHHHHHHHHhhhhhhhcccC--CC-CCHHHHHHHHhh
Q psy2887 144 ERRFQKILVEEPD----IEETISILRGLQKKYEVHHG--VE-ITDPAIVAASEL 190 (899)
Q Consensus 144 ~~Rf~~i~l~~p~----~~e~~~il~~~~~~~~~~~~--~~-~~~~~~~~~~~~ 190 (899)
.-|+.++.+..|. +++...+.+.+++++...++ +. ++++++..+.++
T Consensus 406 YYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y 459 (560)
T COG3829 406 YYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRY 459 (560)
T ss_pred eeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhC
Confidence 4488875555554 45555666777776654333 43 788888776443
No 457
>PF13173 AAA_14: AAA domain
Probab=98.61 E-value=2.3e-07 Score=86.47 Aligned_cols=124 Identities=24% Similarity=0.323 Sum_probs=80.9
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 499 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 499 (899)
.++++||.||||||+++.+++.+. ...+++.+++.+......... +....+.+. ......+||||||
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~~~~~~-----------~~~~~~~~~-~~~~~~~i~iDEi 70 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDRRLADP-----------DLLEYFLEL-IKPGKKYIFIDEI 70 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHHHHhhh-----------hhHHHHHHh-hccCCcEEEEehh
Confidence 589999999999999999999885 346788888876544211000 000011111 1124579999999
Q ss_pred cccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeE
Q psy2887 500 EKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDI 579 (899)
Q Consensus 500 d~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~ 579 (899)
+.++ +....+..+.+.+ .+..||+|+...... .......|.+|. ..
T Consensus 71 q~~~-~~~~~lk~l~d~~------------~~~~ii~tgS~~~~l--------------------~~~~~~~l~gr~-~~ 116 (128)
T PF13173_consen 71 QYLP-DWEDALKFLVDNG------------PNIKIILTGSSSSLL--------------------SKDIAESLAGRV-IE 116 (128)
T ss_pred hhhc-cHHHHHHHHHHhc------------cCceEEEEccchHHH--------------------hhcccccCCCeE-EE
Confidence 9996 5666666777652 355677766643321 122345578898 68
Q ss_pred EEecCCCHHHH
Q psy2887 580 IVFRYLNRKNI 590 (899)
Q Consensus 580 i~f~~l~~~~~ 590 (899)
+...|++-.|+
T Consensus 117 ~~l~Plsf~E~ 127 (128)
T PF13173_consen 117 IELYPLSFREF 127 (128)
T ss_pred EEECCCCHHHh
Confidence 99999998775
No 458
>PRK12377 putative replication protein; Provisional
Probab=98.61 E-value=1.1e-07 Score=98.20 Aligned_cols=114 Identities=19% Similarity=0.325 Sum_probs=67.2
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcc--c-CchHHHHHHHHHHHHHhcCCCEEE
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTK--Y-RGEFEDRLKKILKEISNNQKDIII 89 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~--~-~g~~~~~l~~~~~~~~~~~~~~iL 89 (899)
..+++|+||||||||+||.++|+.+... +..+..+....+...-+ + .+. ....++..+. ...+|
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~-------g~~v~~i~~~~l~~~l~~~~~~~~---~~~~~l~~l~---~~dLL 167 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAK-------GRSVIVVTVPDVMSRLHESYDNGQ---SGEKFLQELC---KVDLL 167 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCCeEEEEHHHHHHHHHHHHhccc---hHHHHHHHhc---CCCEE
Confidence 4689999999999999999999998654 55566666665542110 0 011 1223444443 24499
Q ss_pred EEccccccccCCCCCchhhHHHhhhhhhc---CCceEEEEecChhH--HHHhhhcCHHHHhcc
Q psy2887 90 FIDELHTMIGTGKVEGSIDAGNMLKPELS---RGELHCIGATTLNE--YRQYIEKDAAFERRF 147 (899)
Q Consensus 90 ~iDEi~~l~~~~~~~~~~~~~~~l~~~l~---~~~v~vI~at~~~~--~~~~~~ld~al~~Rf 147 (899)
+|||++....+. ...+.|.++++ .....+|.+||... +.. .+..++.+|+
T Consensus 168 iIDDlg~~~~s~------~~~~~l~~ii~~R~~~~~ptiitSNl~~~~l~~--~~~~ri~dRl 222 (248)
T PRK12377 168 VLDEIGIQRETK------NEQVVLNQIIDRRTASMRSVGMLTNLNHEAMST--LLGERVMDRM 222 (248)
T ss_pred EEcCCCCCCCCH------HHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHH--HhhHHHHHHH
Confidence 999997654321 23345555553 22345566777542 322 2345555555
No 459
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.61 E-value=3.9e-07 Score=104.30 Aligned_cols=163 Identities=12% Similarity=0.146 Sum_probs=97.4
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHH-cCCCCCccCCCeEEEEehhhhhcCc-----------ccCchHHHHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRII-NGEVPNSLLSKKILLLDIALLLAGT-----------KYRGEFEDRLKKILK 78 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~-~~~~p~~l~~~~~~~~~~~~l~~~~-----------~~~g~~~~~l~~~~~ 78 (899)
.+..+|||+|++||||+++|++|..... ..+.+..-.+.+++.+||..+.... .+.|.....-..+|+
T Consensus 240 ~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e 319 (538)
T PRK15424 240 RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE 319 (538)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCCccccccCccccccCCchh
Confidence 4566899999999999999999988621 1111011236789999987653100 000100000012333
Q ss_pred HHHhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC-------------ceEEEEecChhHHH--HhhhcCHHH
Q psy2887 79 EISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCIGATTLNEYR--QYIEKDAAF 143 (899)
Q Consensus 79 ~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~-------------~v~vI~at~~~~~~--~~~~ld~al 143 (899)
.+ .++.|||||++.|.. ..+..|+..++.+ ++.+|++|+..--. ..-...+.|
T Consensus 320 ~A----~gGTLfLdeI~~Lp~--------~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL 387 (538)
T PRK15424 320 IA----HGGTLFLDEIGEMPL--------PLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDL 387 (538)
T ss_pred cc----CCCEEEEcChHhCCH--------HHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHH
Confidence 33 245899999999965 5566777777543 35799988765311 111244567
Q ss_pred HhccccccccCCCHH----HHHHHHHhhhhhhhcccCCCCCHHHHH
Q psy2887 144 ERRFQKILVEEPDIE----ETISILRGLQKKYEVHHGVEITDPAIV 185 (899)
Q Consensus 144 ~~Rf~~i~l~~p~~~----e~~~il~~~~~~~~~~~~~~~~~~~~~ 185 (899)
..|+..+.+..|... +...+++.+++++....+..++++++.
T Consensus 388 ~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~ 433 (538)
T PRK15424 388 FYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQ 433 (538)
T ss_pred HHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 778876566556544 444566777776544455567777664
No 460
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.60 E-value=9e-08 Score=93.03 Aligned_cols=119 Identities=17% Similarity=0.236 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhc--------Ccc---cCchHHHHHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA--------GTK---YRGEFEDRLKKILKE 79 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~--------~~~---~~g~~~~~l~~~~~~ 79 (899)
..+.+|||+|++||||+.+|++|.+.... .+.+++.++|+.+.. |.. +.|... .-..+|+.
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~~s~r-------~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~-~~~G~l~~ 91 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHNNSPR-------KNGPFISVNCAALPEELLESELFGHEKGAFTGARS-DKKGLLEQ 91 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHHCSTT-------TTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSS-EBEHHHHH
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHhhhc-------ccCCeEEEehhhhhcchhhhhhhcccccccccccc-ccCCceee
Confidence 34578999999999999999999885422 267899999976531 100 000000 01134444
Q ss_pred HHhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC-------------ceEEEEecChhH--HHHhhhcCHHHH
Q psy2887 80 ISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCIGATTLNE--YRQYIEKDAAFE 144 (899)
Q Consensus 80 ~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~-------------~v~vI~at~~~~--~~~~~~ld~al~ 144 (899)
| ..++|||||++.|.. .++..|..+++.+ ++.+|++|+.+- +...-...+.|.
T Consensus 92 A----~~GtL~Ld~I~~L~~--------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~l~~~v~~g~fr~dLy 159 (168)
T PF00158_consen 92 A----NGGTLFLDEIEDLPP--------ELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKDLEELVEQGRFREDLY 159 (168)
T ss_dssp T----TTSEEEEETGGGS-H--------HHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-HHHHHHTTSS-HHHH
T ss_pred c----cceEEeecchhhhHH--------HHHHHHHHHHhhchhccccccccccccceEEeecCcCHHHHHHcCCChHHHH
Confidence 4 245999999999975 5666777777522 688999998653 112223445555
Q ss_pred hcccc
Q psy2887 145 RRFQK 149 (899)
Q Consensus 145 ~Rf~~ 149 (899)
.|+..
T Consensus 160 ~rL~~ 164 (168)
T PF00158_consen 160 YRLNV 164 (168)
T ss_dssp HHHTT
T ss_pred HHhce
Confidence 55544
No 461
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.60 E-value=3.7e-07 Score=100.78 Aligned_cols=160 Identities=16% Similarity=0.198 Sum_probs=105.4
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcC-----------cccCchHHHHHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG-----------TKYRGEFEDRLKKILKE 79 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~-----------~~~~g~~~~~l~~~~~~ 79 (899)
.+..+||++|++||||-.+|++|.+.-... +.+++.++|..+... +.+.|... +-...|+.
T Consensus 162 ~s~a~VLI~GESGtGKElvAr~IH~~S~R~-------~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~-~r~G~fE~ 233 (464)
T COG2204 162 PSDASVLITGESGTGKELVARAIHQASPRA-------KGPFIAVNCAAIPENLLESELFGHEKGAFTGAIT-RRIGRFEQ 233 (464)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHhhCccc-------CCCceeeecccCCHHHHHHHhhcccccCcCCccc-ccCcceeE
Confidence 456789999999999999999999866443 568899998765311 01112111 11113333
Q ss_pred HHhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC-------------ceEEEEecChhHHH--HhhhcCHHHH
Q psy2887 80 ISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCIGATTLNEYR--QYIEKDAAFE 144 (899)
Q Consensus 80 ~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~-------------~v~vI~at~~~~~~--~~~~ld~al~ 144 (899)
| .++.||+|||..|.- +++..|+..++.+ ++.||++||.+-.. ..-..-+.|.
T Consensus 234 A----~GGTLfLDEI~~mpl--------~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLy 301 (464)
T COG2204 234 A----NGGTLFLDEIGEMPL--------ELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLY 301 (464)
T ss_pred c----CCceEEeeccccCCH--------HHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHHcCCcHHHHH
Confidence 3 255999999999864 6677788888532 57899999876421 1112345677
Q ss_pred hccccccccCCCH----HHHHHHHHhhhhhhhcccC---CCCCHHHHHHHHhh
Q psy2887 145 RRFQKILVEEPDI----EETISILRGLQKKYEVHHG---VEITDPAIVAASEL 190 (899)
Q Consensus 145 ~Rf~~i~l~~p~~----~e~~~il~~~~~~~~~~~~---~~~~~~~~~~~~~~ 190 (899)
-|+.++.+..|.. ++.-.+++.+++++....+ ..++++++..+..+
T Consensus 302 yRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y 354 (464)
T COG2204 302 YRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAY 354 (464)
T ss_pred hhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC
Confidence 7998877777764 4444566777777665443 47888888876444
No 462
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.59 E-value=2.7e-07 Score=110.52 Aligned_cols=158 Identities=13% Similarity=0.164 Sum_probs=100.1
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHH----------
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEI---------- 80 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~---------- 80 (899)
....+|||+|++||||+++|+++....... +.+++.+||..+... . .-.++|...
T Consensus 346 ~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~-------~~pfv~vnc~~~~~~-----~---~~~elfg~~~~~~~~~~~g 410 (638)
T PRK11388 346 KSSFPVLLCGEEGVGKALLAQAIHNESERA-------AGPYIAVNCQLYPDE-----A---LAEEFLGSDRTDSENGRLS 410 (638)
T ss_pred CcCCCEEEECCCCcCHHHHHHHHHHhCCcc-------CCCeEEEECCCCChH-----H---HHHHhcCCCCcCccCCCCC
Confidence 345689999999999999999998765322 568999998765310 0 011122110
Q ss_pred -HhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC-------------ceEEEEecChhHHH--HhhhcCHHHH
Q psy2887 81 -SNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCIGATTLNEYR--QYIEKDAAFE 144 (899)
Q Consensus 81 -~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~-------------~v~vI~at~~~~~~--~~~~ld~al~ 144 (899)
.....++.|||||++.|.. +.+..|..+++.+ ++.+|++|+..... ..-...+.|.
T Consensus 411 ~~~~a~~GtL~ldei~~l~~--------~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~ 482 (638)
T PRK11388 411 KFELAHGGTLFLEKVEYLSP--------ELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLY 482 (638)
T ss_pred ceeECCCCEEEEcChhhCCH--------HHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHhcCCChHHHh
Confidence 0012356899999999965 5566777777543 46789988875311 1123456677
Q ss_pred hccccccccCCCHHH----HHHHHHhhhhhhhccc--CCCCCHHHHHHHHhhh
Q psy2887 145 RRFQKILVEEPDIEE----TISILRGLQKKYEVHH--GVEITDPAIVAASELS 191 (899)
Q Consensus 145 ~Rf~~i~l~~p~~~e----~~~il~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 191 (899)
.|+..+.+..|...+ ...+++.++.++.... .+.++++++..+....
T Consensus 483 ~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~ 535 (638)
T PRK11388 483 YALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYR 535 (638)
T ss_pred hhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCC
Confidence 788765555555444 4455666766654322 3578999988876553
No 463
>KOG0377|consensus
Probab=98.58 E-value=1.8e-08 Score=105.13 Aligned_cols=119 Identities=22% Similarity=0.397 Sum_probs=81.3
Q ss_pred cccccccccHHHHHHHHHHhhccCCccceeeccccCCCCceEehhHHHHHhc----CCccEEEccCChHhHHhHhhhccc
Q psy2887 631 YGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLININK 706 (899)
Q Consensus 631 ~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~~~~l~~~----~~~~~~v~GNHe~~~l~~~~~~~~ 706 (899)
-..||+||.++.|--.+-+-|+-.+..-.||.||+||||..+++||-.|..+ ++.++.=|||||+.+++...+...
T Consensus 168 TiCGDLHGklDDL~~I~yKNGlPS~~npYvFNGDFVDRGk~siEvLmiL~a~~lv~P~~~~LNRGNHED~mmNlRYGF~k 247 (631)
T KOG0377|consen 168 TICGDLHGKLDDLLVILYKNGLPSSSNPYVFNGDFVDRGKRSIEVLMILFALYLVYPNAVHLNRGNHEDHMMNLRYGFIK 247 (631)
T ss_pred EEeccccccccceEEEEecCCCCCCCCCeeecCchhhccccchhhHHHHHHHHhcCchhhhccCCchHHHHHHHHHhHHH
Confidence 3469999996655555555555556677899999999999999999877775 445788899999999987776542
Q ss_pred CchhchHHHhhCCcChHHHHHHHhcCCceEE-eCCEEEEecccccc
Q psy2887 707 KSKLDTFDDILDAPDKKKLVSWLRTQPLAIY-YKKYLMIHAGVAKQ 751 (899)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~-~~~~~~vHAg~~~~ 751 (899)
.-. ..+. ....+...-+.+.++-||+.-. ..++++||||+...
T Consensus 248 Ev~-~KYk-~~~k~Ilr~leevy~WLPi~tiid~~ilvvHGGiSd~ 291 (631)
T KOG0377|consen 248 EVE-SKYK-RHGKRILRFLEEVYRWLPIGTIIDSRILVVHGGISDS 291 (631)
T ss_pred HHH-HHhh-hcccHHHHHHHHHHHhcchhhhcccceEEEecCcccc
Confidence 100 0000 0011112334556666788744 45899999999864
No 464
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.58 E-value=7e-08 Score=104.95 Aligned_cols=196 Identities=14% Similarity=0.161 Sum_probs=103.1
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHHhhcCCCCC----CCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccc
Q psy2887 381 NIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDA----KRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE 456 (899)
Q Consensus 381 ~l~~~l~~~v~gq~~~~~~l~~~i~~~~~~~~~~----~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~ 456 (899)
.+.+.+-..|+|.+.++..|.-.+...... ..+ .+..-|+||+|.||||||.|.+.+++.. . ..+..++..
T Consensus 17 ~l~~s~aP~i~g~~~iK~aill~L~~~~~~-~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~---p-r~v~~~g~~ 91 (331)
T PF00493_consen 17 RLANSIAPSIYGHEDIKKAILLQLFGGVEK-NDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLA---P-RSVYTSGKG 91 (331)
T ss_dssp CCHHHCSSTTTT-HHHHHHHCCCCTT--SC-CCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT----S-SEEEEECCG
T ss_pred HHHHHhCCcCcCcHHHHHHHHHHHHhcccc-ccccccccccccceeeccchhhhHHHHHHHHHhhC---C-ceEEECCCC
Confidence 345567788999988887775555322211 011 1223489999999999999999887655 2 233333322
Q ss_pred cccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCC-CceE-ecCCeEE
Q psy2887 457 FIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNR-GRTI-NFRNTII 534 (899)
Q Consensus 457 ~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~-g~~~-~~~~~~i 534 (899)
-........ +...+. .| +-..-.+++-.+..+|++|||+|++.....+.|+++||.++++... |... -..++-|
T Consensus 92 ~s~~gLta~-~~~d~~-~~--~~~leaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~sv 167 (331)
T PF00493_consen 92 SSAAGLTAS-VSRDPV-TG--EWVLEAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSV 167 (331)
T ss_dssp STCCCCCEE-ECCCGG-TS--SECEEE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EE
T ss_pred cccCCccce-eccccc-cc--eeEEeCCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhhh
Confidence 211110000 000000 00 0011124556677799999999999999999999999999988765 3332 2367789
Q ss_pred EEecCCChhhhhhhhcCcHHHHHHHHHHHHhh--cCChhHhhccCeEEEe-cCCCHHHHHHHHHHHH
Q psy2887 535 VMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKI--YFRPEFINRIDDIIVF-RYLNRKNILSIANIQL 598 (899)
Q Consensus 535 I~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~l~~R~~~~i~f-~~l~~~~~~~i~~~~l 598 (899)
++++|.....+.... .+.+ .+++.|++|||.++.+ .+++++.=..+....+
T Consensus 168 laa~NP~~g~~~~~~-------------~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il 221 (331)
T PF00493_consen 168 LAAANPKFGRYDPNK-------------SLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHIL 221 (331)
T ss_dssp EEEE--TT--S-TTS--------------CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHH
T ss_pred HHHHhhhhhhcchhh-------------hhHHhcccchhhHhhcCEEEEeccccccccccccceEEE
Confidence 999996443221110 0111 3788899999987665 4555444444555444
No 465
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.57 E-value=2.4e-06 Score=97.49 Aligned_cols=222 Identities=15% Similarity=0.156 Sum_probs=115.8
Q ss_pred CCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccc-cccccc-chhhcc
Q psy2887 390 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMS-EFIEKH-SISRLI 467 (899)
Q Consensus 390 v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~-~~~~~~-~~~~l~ 467 (899)
+.-..+-++.|..++.....+. .+...+||+||||||||++++.||+++ +..+.....+ .+.... ....+.
T Consensus 21 LavhkkKv~eV~~wl~~~~~~~----~~~~iLlLtGP~G~GKtttv~~La~el---g~~v~Ew~np~~~~~~~~~~~d~~ 93 (519)
T PF03215_consen 21 LAVHKKKVEEVRSWLEEMFSGS----SPKRILLLTGPSGCGKTTTVKVLAKEL---GFEVQEWINPVSFRESDNQEDDFE 93 (519)
T ss_pred hhccHHHHHHHHHHHHHHhccC----CCcceEEEECCCCCCHHHHHHHHHHHh---CCeeEEecCCCCcccccccccccc
Confidence 4455666677777776544331 122258899999999999999999999 6555544222 111100 000000
Q ss_pred CCCCC---cccccccchhhHH---------H------HhCCCEEEEEccccccC----HHHHHHHHHhhcCCceecCCCc
Q psy2887 468 GAPPG---YIGYEEGGYLTEI---------V------RRKPYSLILLDEIEKAN----SDVFNILLQILDDGRLTDNRGR 525 (899)
Q Consensus 468 g~~~~---~~g~~~~~~l~~~---------~------~~~~~~vl~lDEid~~~----~~~~~~Ll~~le~g~~~~~~g~ 525 (899)
+.... |.+. ...+.+. + ......||+|||+-... ..+.+.|.+.+..+.
T Consensus 94 s~~~~~~~f~sq--~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~~l~~~~------- 164 (519)
T PF03215_consen 94 SDFNKFDEFLSQ--SDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALRQYLRSSR------- 164 (519)
T ss_pred ccccccccccch--hhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHHHHHHcCC-------
Confidence 00000 0000 0011111 0 01234699999995432 345666666666422
Q ss_pred eEecCCeEEEEec-CCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccC-eEEEecCCCHHHHHHHHHHHHHHHHH
Q psy2887 526 TINFRNTIIVMTS-NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRID-DIIVFRYLNRKNILSIANIQLNILKN 603 (899)
Q Consensus 526 ~~~~~~~~iI~ts-n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~-~~i~f~~l~~~~~~~i~~~~l~~~~~ 603 (899)
....+||+|- ......-.. .. -.-.....|+++++.... .+|.|.|.+..-+.+.+.+.+..-..
T Consensus 165 ---~~PlV~iiSe~~~~~~~~~~------~~----~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~ 231 (519)
T PF03215_consen 165 ---CLPLVFIISETESLSGDNSY------RS----NSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEAR 231 (519)
T ss_pred ---CCCEEEEEecccccCCCCcc------cc----cchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhh
Confidence 1145556651 110000000 00 000123457888886543 59999999999888888877755322
Q ss_pred HHHhcCcceeecHHHHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 604 KLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
..... ....-..++++.|+. ...|||+.+...|+=..
T Consensus 232 ~~~~~-~~~p~~~~~l~~I~~------~s~GDIRsAIn~LQf~~ 268 (519)
T PF03215_consen 232 SSSGK-NKVPDKQSVLDSIAE------SSNGDIRSAINNLQFWC 268 (519)
T ss_pred hhcCC-ccCCChHHHHHHHHH------hcCchHHHHHHHHHHHh
Confidence 22111 111222456888877 33599888865555433
No 466
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.56 E-value=4.4e-07 Score=105.08 Aligned_cols=159 Identities=18% Similarity=0.253 Sum_probs=97.3
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhc--------Cc---ccCchHHHHHHHHHHHH
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA--------GT---KYRGEFEDRLKKILKEI 80 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~--------~~---~~~g~~~~~l~~~~~~~ 80 (899)
...+|+|+|++||||+++|+++....... ..+++.++|..+.. |. .+.|..+ .-..+|+.+
T Consensus 226 ~~~pvlI~GE~GtGK~~lA~aiH~~s~r~-------~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~-~~~g~~e~a 297 (520)
T PRK10820 226 LDAPLLITGDTGTGKDLLAYACHLRSPRG-------KKPFLALNCASIPDDVVESELFGHAPGAYPNALE-GKKGFFEQA 297 (520)
T ss_pred CCCCEEEECCCCccHHHHHHHHHHhCCCC-------CCCeEEeccccCCHHHHHHHhcCCCCCCcCCccc-CCCChhhhc
Confidence 56689999999999999999987654222 56788888876531 10 0011000 011223333
Q ss_pred HhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC-------------ceEEEEecChhH--HHHhhhcCHHHHh
Q psy2887 81 SNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCIGATTLNE--YRQYIEKDAAFER 145 (899)
Q Consensus 81 ~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~-------------~v~vI~at~~~~--~~~~~~ld~al~~ 145 (899)
.++.|||||++.|.. ..+..|...++.+ ++.+|++|+.+. +...-...+.|..
T Consensus 298 ----~~GtL~LdeI~~L~~--------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~ 365 (520)
T PRK10820 298 ----NGGSVLLDEIGEMSP--------RMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY 365 (520)
T ss_pred ----CCCEEEEeChhhCCH--------HHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh
Confidence 245899999999965 4455666666432 467888877653 1112235577888
Q ss_pred ccccccccCCCH----HHHHHHHHhhhhhhhcccC---CCCCHHHHHHHHhh
Q psy2887 146 RFQKILVEEPDI----EETISILRGLQKKYEVHHG---VEITDPAIVAASEL 190 (899)
Q Consensus 146 Rf~~i~l~~p~~----~e~~~il~~~~~~~~~~~~---~~~~~~~~~~~~~~ 190 (899)
|+..+.+..|.. ++...+++.+++++....+ ..++++++..+...
T Consensus 366 rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y 417 (520)
T PRK10820 366 RLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRY 417 (520)
T ss_pred hcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcC
Confidence 987644444443 3444556667766554443 36889988877544
No 467
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.56 E-value=8.5e-07 Score=102.34 Aligned_cols=201 Identities=13% Similarity=0.102 Sum_probs=116.0
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHHhhcCCCCC---CCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccc
Q psy2887 380 LNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDA---KRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE 456 (899)
Q Consensus 380 ~~l~~~l~~~v~gq~~~~~~l~~~i~~~~~~~~~~---~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~ 456 (899)
..+.+.+-..+.|.+.+++.|.-++--+-...... -+..-|+||.|.||||||.|-+.+++.+.+ .-+....++.
T Consensus 278 ~~l~~SiaPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr--~vytsgkgss 355 (682)
T COG1241 278 DILIKSIAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPR--GVYTSGKGSS 355 (682)
T ss_pred HHHHHHhcccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCc--eEEEcccccc
Confidence 45566777899999999999887775332111111 122348999999999999999999998821 1122222222
Q ss_pred cccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCC-CceE-ecCCeEE
Q psy2887 457 FIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNR-GRTI-NFRNTII 534 (899)
Q Consensus 457 ~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~-g~~~-~~~~~~i 534 (899)
-..-... ..- .+ ..| +-..-.+++-.+.+||+.|||+|+|+....++|..+||..+++... |-.. -..+|-+
T Consensus 356 ~~GLTAa--v~r-d~-~tg--e~~LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsv 429 (682)
T COG1241 356 AAGLTAA--VVR-DK-VTG--EWVLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSV 429 (682)
T ss_pred ccCceeE--EEE-cc-CCC--eEEEeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhhhh
Confidence 1110000 000 00 001 0000112344566789999999999999999999999998877544 3221 2245566
Q ss_pred EEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecC-CCHHHHHHHHHHHHH
Q psy2887 535 VMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRY-LNRKNILSIANIQLN 599 (899)
Q Consensus 535 I~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~-l~~~~~~~i~~~~l~ 599 (899)
++++|.....+.. ...+.+ .=.|++.|++|||.++.... ++++.=+.++.+.+.
T Consensus 430 LAAaNP~~Gryd~-----~~~~~e------nI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~ 484 (682)
T COG1241 430 LAAANPKFGRYDP-----KKTVAE------NINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILD 484 (682)
T ss_pred hhhhCCCCCcCCC-----CCCHHH------hcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHH
Confidence 7777753321111 000000 11478899999998666655 444434445444443
No 468
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.55 E-value=2.1e-07 Score=90.02 Aligned_cols=57 Identities=23% Similarity=0.256 Sum_probs=45.3
Q ss_pred cccccccccHHHHHHHHHHhhccCCccceeeccccCCCCceEehhHHHHHhcCCccEEEccCChHh
Q psy2887 631 YGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIH 696 (899)
Q Consensus 631 ~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~~~~l~~~~~~~~~v~GNHe~~ 696 (899)
..++|+|++.+.+.++++.+.. .|.++++||+++.++... + .....+.+|+||||..
T Consensus 3 ~~isD~H~~~~~~~~~~~~~~~---~d~ii~~GD~~~~~~~~~-----~-~~~~~~~~V~GNhD~~ 59 (155)
T cd00841 3 GVISDTHGSLELLEKALELFGD---VDLIIHAGDVLYPGPLNE-----L-ELKAPVIAVRGNCDGE 59 (155)
T ss_pred EEEecCCCCHHHHHHHHHHhcC---CCEEEECCccccccccch-----h-hcCCcEEEEeCCCCCc
Confidence 3579999999889999987643 689999999999998654 1 2233588999999965
No 469
>PRK08181 transposase; Validated
Probab=98.55 E-value=2e-07 Score=97.46 Aligned_cols=105 Identities=15% Similarity=0.224 Sum_probs=61.3
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEE
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFI 91 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~i 91 (899)
...|++|+||||||||+|+.++|+.+... +..++.+....+...-. .......+.+.+..+. .+.+|+|
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~-------g~~v~f~~~~~L~~~l~-~a~~~~~~~~~l~~l~---~~dLLII 173 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIEN-------GWRVLFTRTTDLVQKLQ-VARRELQLESAIAKLD---KFDLLIL 173 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHc-------CCceeeeeHHHHHHHHH-HHHhCCcHHHHHHHHh---cCCEEEE
Confidence 45689999999999999999999988553 55667666655542100 0000112334444443 2449999
Q ss_pred ccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChh
Q psy2887 92 DELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLN 131 (899)
Q Consensus 92 DEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~ 131 (899)
||++.+..+. .....+.+.+....+++ .+|.+||.+
T Consensus 174 DDlg~~~~~~--~~~~~Lf~lin~R~~~~--s~IiTSN~~ 209 (269)
T PRK08181 174 DDLAYVTKDQ--AETSVLFELISARYERR--SILITANQP 209 (269)
T ss_pred eccccccCCH--HHHHHHHHHHHHHHhCC--CEEEEcCCC
Confidence 9999875432 11122333343333443 455556654
No 470
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.54 E-value=5.7e-07 Score=101.68 Aligned_cols=128 Identities=17% Similarity=0.261 Sum_probs=77.5
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCc------------------cCCCeEEE----EehhhhhcCcccCchHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNS------------------LLSKKILL----LDIALLLAGTKYRGEFE 70 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~------------------l~~~~~~~----~~~~~l~~~~~~~g~~~ 70 (899)
..+++|+||||+|||++++.++..+........ +...++.. +....+..|+..
T Consensus 210 G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~----- 284 (506)
T PRK09862 210 GHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAI----- 284 (506)
T ss_pred CcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCce-----
Confidence 457999999999999999999976532110001 11112211 111122222110
Q ss_pred HHHHHHHHHHHhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC---------------ceEEEEecChhHHHH
Q psy2887 71 DRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG---------------ELHCIGATTLNEYRQ 135 (899)
Q Consensus 71 ~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~---------------~v~vI~at~~~~~~~ 135 (899)
.-...+..+ ...+||+||++.+.. ...+.|.+.|+.+ ++.+|+|+|+.++..
T Consensus 285 -~~pG~l~~A----~gGvLfLDEi~e~~~--------~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~ 351 (506)
T PRK09862 285 -PGPGEISLA----HNGVLFLDELPEFER--------RTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGH 351 (506)
T ss_pred -ehhhHhhhc----cCCEEecCCchhCCH--------HHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCcccee
Confidence 011122322 245999999988743 5667788777543 368999999875221
Q ss_pred h----------------hhcCHHHHhcccc-ccccCCCHH
Q psy2887 136 Y----------------IEKDAAFERRFQK-ILVEEPDIE 158 (899)
Q Consensus 136 ~----------------~~ld~al~~Rf~~-i~l~~p~~~ 158 (899)
+ -.+..++++||+. +.++.|+.+
T Consensus 352 ~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 352 YQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred cCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 1 2478899999997 889888755
No 471
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.54 E-value=1.2e-06 Score=102.63 Aligned_cols=118 Identities=14% Similarity=0.144 Sum_probs=78.0
Q ss_pred CEEEEEccccccccCCCCCchhhHHHhhhhhhcC-----------------------CceEEEEecChhHHHHhhhcCHH
Q psy2887 86 DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-----------------------GELHCIGATTLNEYRQYIEKDAA 142 (899)
Q Consensus 86 ~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~-----------------------~~v~vI~at~~~~~~~~~~ld~a 142 (899)
+++|||||++.|.. .....|+..|+. .++.+|+++|+.. ...++|.
T Consensus 218 gGtL~Ldei~~L~~--------~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~---l~~l~~~ 286 (608)
T TIGR00764 218 KGVLYIDEIKTMPL--------EVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDD---LEGMHPA 286 (608)
T ss_pred CCEEEEEChHhCCH--------HHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHH---HhhcCHH
Confidence 46999999999864 344556666532 1568999999875 3378999
Q ss_pred HHhccc---c-cccc---CCCHHHHHHHHHhhhhhhhcc-cCCCCCHHHHHHHHhhhhhhcccCCC----chhHHHHHHH
Q psy2887 143 FERRFQ---K-ILVE---EPDIEETISILRGLQKKYEVH-HGVEITDPAIVAASELSYRYISDRFM----PDKAIDLIDE 210 (899)
Q Consensus 143 l~~Rf~---~-i~l~---~p~~~e~~~il~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----p~~~~~ll~~ 210 (899)
|++||. . +.|+ +.+.+.+.++.+.+.+..+.. .-..++++++..+++.+.|....+.. .....+++..
T Consensus 287 l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~ 366 (608)
T TIGR00764 287 LRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRA 366 (608)
T ss_pred HHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHH
Confidence 999998 3 3333 235666767766655554433 22368999999998877765544432 3456666666
Q ss_pred HHHh
Q psy2887 211 AAAK 214 (899)
Q Consensus 211 a~~~ 214 (899)
|...
T Consensus 367 A~~i 370 (608)
T TIGR00764 367 AGDI 370 (608)
T ss_pred HHHH
Confidence 6443
No 472
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.54 E-value=9.5e-07 Score=102.42 Aligned_cols=160 Identities=16% Similarity=0.223 Sum_probs=100.9
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcC---cc--------cCchHHHHHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG---TK--------YRGEFEDRLKKILKE 79 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~---~~--------~~g~~~~~l~~~~~~ 79 (899)
....+|||+|++|||||++|+++....... +.+++.++|..+... +. +.|.... -...|..
T Consensus 208 ~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~-------~~p~v~v~c~~~~~~~~e~~lfG~~~g~~~ga~~~-~~g~~~~ 279 (509)
T PRK05022 208 ASDLNVLILGETGVGKELVARAIHAASPRA-------DKPLVYLNCAALPESLAESELFGHVKGAFTGAISN-RSGKFEL 279 (509)
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhCCcC-------CCCeEEEEcccCChHHHHHHhcCccccccCCCccc-CCcchhh
Confidence 356689999999999999999999865322 568899998765310 00 0010000 0012222
Q ss_pred HHhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC-------------ceEEEEecChhHHH--HhhhcCHHHH
Q psy2887 80 ISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCIGATTLNEYR--QYIEKDAAFE 144 (899)
Q Consensus 80 ~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~-------------~v~vI~at~~~~~~--~~~~ld~al~ 144 (899)
+ .++.|||||++.|.. +.+..|...++.+ ++.+|++|+..-.. ..-.+.+.|.
T Consensus 280 a----~gGtL~ldeI~~L~~--------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~ 347 (509)
T PRK05022 280 A----DGGTLFLDEIGELPL--------ALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLY 347 (509)
T ss_pred c----CCCEEEecChhhCCH--------HHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHHcCCccHHHH
Confidence 2 255899999999964 4555666666432 46899998875311 1223567788
Q ss_pred hccccccccCCCH----HHHHHHHHhhhhhhhccc---CCCCCHHHHHHHHhh
Q psy2887 145 RRFQKILVEEPDI----EETISILRGLQKKYEVHH---GVEITDPAIVAASEL 190 (899)
Q Consensus 145 ~Rf~~i~l~~p~~----~e~~~il~~~~~~~~~~~---~~~~~~~~~~~~~~~ 190 (899)
.|+..+.+..|.. ++...+++.+++++.... .+.++++++..+...
T Consensus 348 ~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y 400 (509)
T PRK05022 348 HRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAY 400 (509)
T ss_pred hcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC
Confidence 8887655555554 344455677777665432 367999999877554
No 473
>PRK09453 phosphodiesterase; Provisional
Probab=98.53 E-value=4.5e-07 Score=90.21 Aligned_cols=66 Identities=21% Similarity=0.309 Sum_probs=52.0
Q ss_pred cccccccccHHHHHHHHHHhhccCCccceeeccccCCCCce--------EehhHHHHHhcCCccEEEccCChHhH
Q psy2887 631 YGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQ--------SLDTLRMVYSMRNYAKIVLGNHEIHL 697 (899)
Q Consensus 631 ~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~--------~~~~~~~l~~~~~~~~~v~GNHe~~~ 697 (899)
..++|+|+...+++++++.+.. ...+.++++||++++|+. ..++++++.+....+.+|+||||.++
T Consensus 4 ~viSD~Hg~~~~~~~~l~~~~~-~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~V~GNhD~~~ 77 (182)
T PRK09453 4 MFASDTHGSLPATEKALELFAQ-SGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAYADKIIAVRGNCDSEV 77 (182)
T ss_pred EEEEeccCCHHHHHHHHHHHHh-cCCCEEEEcccccccCcCCCCccccCHHHHHHHHHhcCCceEEEccCCcchh
Confidence 4579999999999998877643 345899999999998873 34677777666546899999999765
No 474
>KOG1942|consensus
Probab=98.53 E-value=1.1e-06 Score=88.32 Aligned_cols=96 Identities=20% Similarity=0.161 Sum_probs=74.0
Q ss_pred CEEEEEccccccccCCCCCchhhHHHhhhhhhcCC-ceEEEEecChhHH--------HHhhhcCHHHHhccccccccCCC
Q psy2887 86 DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-ELHCIGATTLNEY--------RQYIEKDAAFERRFQKILVEEPD 156 (899)
Q Consensus 86 ~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~-~v~vI~at~~~~~--------~~~~~ld~al~~Rf~~i~l~~p~ 156 (899)
|+||||||+|.|- .+....|...+++. ..++|+|||..-. ..-.-+++.|+.|+-.|..-.++
T Consensus 297 PGVLFIDEVhMLD--------iEcFTyL~kalES~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~ 368 (456)
T KOG1942|consen 297 PGVLFIDEVHMLD--------IECFTYLHKALESPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYD 368 (456)
T ss_pred CcceEeeehhhhh--------hHHHHHHHHHhcCCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCC
Confidence 7899999999983 35667788888764 4678888886432 11235788999999888888899
Q ss_pred HHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhh
Q psy2887 157 IEETISILRGLQKKYEVHHGVEITDPAIVAASELSYR 193 (899)
Q Consensus 157 ~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (899)
+++.++|++.-.+. .++.++++++..++.+..+
T Consensus 369 ~~e~r~Ii~~Ra~~----E~l~~~e~a~~~l~~~gt~ 401 (456)
T KOG1942|consen 369 EEEIRQIIKIRAQV----EGLQVEEEALDLLAEIGTS 401 (456)
T ss_pred HHHHHHHHHHHHhh----hcceecHHHHHHHHhhccc
Confidence 99999999866654 6788999999988877543
No 475
>KOG0480|consensus
Probab=98.52 E-value=7.8e-07 Score=98.49 Aligned_cols=199 Identities=16% Similarity=0.170 Sum_probs=116.5
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhc---CCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEe
Q psy2887 376 REKLLNIENLLCKRVVGQDEAISAVSNAIRRSRS---GLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRI 452 (899)
Q Consensus 376 ~~~l~~l~~~l~~~v~gq~~~~~~l~~~i~~~~~---~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~ 452 (899)
.....++...|...|.|.+.++..|...+--.-. +-.-+-+...|++++|.|||||+-+.++.+..+ ... ++.
T Consensus 333 ~nly~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fs---PR~-vYt 408 (764)
T KOG0480|consen 333 ENLYKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFS---PRS-VYT 408 (764)
T ss_pred chHHHHHHHhhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccC---Ccc-eEe
Confidence 3456678888999999999999998877743211 111122333489999999999999999999887 222 222
Q ss_pred cccccccccchhhccCCCCCcccccccch---hhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEec
Q psy2887 453 DMSEFIEKHSISRLIGAPPGYIGYEEGGY---LTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINF 529 (899)
Q Consensus 453 ~~~~~~~~~~~~~l~g~~~~~~g~~~~~~---l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~ 529 (899)
.+..-... |-...-+-.++.+. -.+++--+.++|..|||+|||+..-|-+|+.+||.-.++ .
T Consensus 409 sGkaSSaA-------GLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtIS--------I 473 (764)
T KOG0480|consen 409 SGKASSAA-------GLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTIS--------I 473 (764)
T ss_pred cCcccccc-------cceEEEEecCCCCceeeecCcEEEccCceEEechhcccChHhHHHHHHHHHhheeh--------h
Confidence 21110000 00000010111111 123344566789999999999999999999999985554 3
Q ss_pred CCeEEEEecCCChhhhhhhh--cCcHHHHHHHHHHHHhh--cCChhHhhccCeE-EEecCCCHHHHHHHHHHHH
Q psy2887 530 RNTIIVMTSNLGSDKIKEME--KGDKEIIKLAVMNEVKI--YFRPEFINRIDDI-IVFRYLNRKNILSIANIQL 598 (899)
Q Consensus 530 ~~~~iI~tsn~~~~~~~~~~--~~~~~~~~~~~~~~l~~--~~~~~l~~R~~~~-i~f~~l~~~~~~~i~~~~l 598 (899)
.++=+++|-|.....+..+. ++.++.- ..+++ .+++++++|||.+ |.+..+++..=..|..+.+
T Consensus 474 aKAGv~aTLnARtSIlAAANPv~GhYdR~-----ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIl 542 (764)
T KOG0480|consen 474 AKAGVVATLNARTSILAAANPVGGHYDRK-----KTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHIL 542 (764)
T ss_pred eecceEEeecchhhhhhhcCCcCCccccc-----cchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHH
Confidence 44445555554444333321 0111100 11222 4689999999974 4455566654445554444
No 476
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.52 E-value=2e-07 Score=97.00 Aligned_cols=176 Identities=17% Similarity=0.231 Sum_probs=94.4
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCC-CccCCCeEEEE-ehhhh-------------h----cCc-------ccC
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVP-NSLLSKKILLL-DIALL-------------L----AGT-------KYR 66 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p-~~l~~~~~~~~-~~~~l-------------~----~~~-------~~~ 66 (899)
...++|+||.|+|||+|++.+...+...+.. ..+........ ..... . .+. ...
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 5678999999999999999999987332111 00000000000 00000 0 000 011
Q ss_pred chHHHHHHHHHHHHHhcCCCEEEEEccccccc-cCCCCCchhhHHHhhhhhh----cCCceEEEEecChhHHH-HhhhcC
Q psy2887 67 GEFEDRLKKILKEISNNQKDIIIFIDELHTMI-GTGKVEGSIDAGNMLKPEL----SRGELHCIGATTLNEYR-QYIEKD 140 (899)
Q Consensus 67 g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~-~~~~~~~~~~~~~~l~~~l----~~~~v~vI~at~~~~~~-~~~~ld 140 (899)
......+..+++.+.+...+.|++|||++.+. ... ........|...+ ....+.+|.+++...+. ......
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~ 176 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE---EDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDK 176 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT---TTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TT
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc---chHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhccc
Confidence 23445677777777765556899999999998 222 1123333333333 45566666666555432 234445
Q ss_pred HHHHhccccccccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhh
Q psy2887 141 AAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRY 194 (899)
Q Consensus 141 ~al~~Rf~~i~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (899)
..+..|+..+.+++.+.++..++++...... .++.++++.+..+..+++|+
T Consensus 177 ~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 177 SPLFGRFSHIELKPLSKEEAREFLKELFKEL---IKLPFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp STTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-
T ss_pred CccccccceEEEeeCCHHHHHHHHHHHHHHh---hcccCCHHHHHHHHHHhCCC
Confidence 5677788789999999999999998876653 12245899999999999874
No 477
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.50 E-value=1.3e-06 Score=105.28 Aligned_cols=160 Identities=18% Similarity=0.251 Sum_probs=99.4
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcC---c--------ccCchHHHHHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG---T--------KYRGEFEDRLKKILKE 79 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~---~--------~~~g~~~~~l~~~~~~ 79 (899)
....+|||+|++|||||++|+++...... .+.+++.++|..+..+ . .+.|...... ..++.
T Consensus 397 ~~~~pVLI~GE~GTGK~~lA~~ih~~s~r-------~~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~-g~le~ 468 (686)
T PRK15429 397 QSDSTVLILGETGTGKELIARAIHNLSGR-------NNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRI-GRFEL 468 (686)
T ss_pred CCCCCEEEECCCCcCHHHHHHHHHHhcCC-------CCCCeEEEecccCChhHhhhhhcCcccccccccccchh-hHHHh
Confidence 45568999999999999999999876532 2668888888765321 0 0111111111 12332
Q ss_pred HHhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC-------------CceEEEEecChhHH--HHhhhcCHHHH
Q psy2887 80 ISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-------------GELHCIGATTLNEY--RQYIEKDAAFE 144 (899)
Q Consensus 80 ~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~-------------~~v~vI~at~~~~~--~~~~~ld~al~ 144 (899)
+ .+++|||||++.|.. +....|...++. .++.+|++|+..-. ...-.+.+.|.
T Consensus 469 a----~~GtL~Ldei~~L~~--------~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~ 536 (686)
T PRK15429 469 A----DKSSLFLDEVGDMPL--------ELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLY 536 (686)
T ss_pred c----CCCeEEEechhhCCH--------HHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHH
Confidence 2 256999999999864 455566666643 35689999877531 11223456677
Q ss_pred hccccccccCCCHHHH----HHHHHhhhhhhhcccC--C-CCCHHHHHHHHhh
Q psy2887 145 RRFQKILVEEPDIEET----ISILRGLQKKYEVHHG--V-EITDPAIVAASEL 190 (899)
Q Consensus 145 ~Rf~~i~l~~p~~~e~----~~il~~~~~~~~~~~~--~-~~~~~~~~~~~~~ 190 (899)
.|+..+.+..|...+| ..+++.++.++...++ + .+++++++.+...
T Consensus 537 ~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y 589 (686)
T PRK15429 537 YRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNM 589 (686)
T ss_pred hccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC
Confidence 7887655566654444 4456777666554333 2 5888888877444
No 478
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=98.49 E-value=1.9e-05 Score=94.56 Aligned_cols=143 Identities=16% Similarity=0.213 Sum_probs=93.6
Q ss_pred CCCCCCCeEEEcCCCCcHHHHHH-HHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHh-----
Q psy2887 9 NFYFTSNPVLIGEPGVGKTAIVE-GLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN----- 82 (899)
Q Consensus 9 ~~~~~~~iLL~GppGtGKTtla~-~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~----- 82 (899)
...+.+.++++||||+|||.|+- +|-.++ ...+..++.+.-.. ++..+..+-.+...
T Consensus 1490 ~lnt~R~~i~cGppGSgK~mlM~~sLrs~~----------~~ev~~~Nfs~~t~-------T~s~ls~Ler~t~yy~~tg 1552 (3164)
T COG5245 1490 ALNTLRSYIYCGPPGSGKEMLMCPSLRSEL----------ITEVKYFNFSTCTM-------TPSKLSVLERETEYYPNTG 1552 (3164)
T ss_pred HHhccceEEEECCCCCccchhcchhhhhhh----------heeeeEEeeccccC-------CHHHHHHHHhhceeeccCC
Confidence 34667789999999999999764 444444 45555555432211 11123333222221
Q ss_pred --------cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--------------CceEEEEecChhHHHHhhhcC
Q psy2887 83 --------NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--------------GELHCIGATTLNEYRQYIEKD 140 (899)
Q Consensus 83 --------~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--------------~~v~vI~at~~~~~~~~~~ld 140 (899)
.-...|||.|||. .+.....+++++.-.+.+++++ .++.+.|++|++.-.......
T Consensus 1553 ~~~l~PK~~vK~lVLFcDeIn--Lp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~ 1630 (3164)
T COG5245 1553 VVRLYPKPVVKDLVLFCDEIN--LPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYY 1630 (3164)
T ss_pred eEEEccCcchhheEEEeeccC--CccccccCCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccH
Confidence 0123599999999 4444455566666677777764 367899999998754455566
Q ss_pred HHHHhccccccccCCCHHHHHHHHHhhhhh
Q psy2887 141 AAFERRFQKILVEEPDIEETISILRGLQKK 170 (899)
Q Consensus 141 ~al~~Rf~~i~l~~p~~~e~~~il~~~~~~ 170 (899)
..+.||-..+.+..|.......|.+.++..
T Consensus 1631 eRf~r~~v~vf~~ype~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1631 ERFIRKPVFVFCCYPELASLRNIYEAVLMG 1660 (3164)
T ss_pred HHHhcCceEEEecCcchhhHHHHHHHHHHH
Confidence 677777767889999999999998876654
No 479
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.47 E-value=2e-06 Score=87.86 Aligned_cols=134 Identities=21% Similarity=0.301 Sum_probs=80.6
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 499 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 499 (899)
.-.++||+|||||+..+.+|+.+ |..++.++|++-.+...+.++ +...+.. +..+.|||+
T Consensus 34 ~~~~~GpagtGKtetik~La~~l---G~~~~vfnc~~~~~~~~l~ri---------------l~G~~~~--GaW~cfdef 93 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKDLARAL---GRFVVVFNCSEQMDYQSLSRI---------------LKGLAQS--GAWLCFDEF 93 (231)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCT---T--EEEEETTSSS-HHHHHHH---------------HHHHHHH--T-EEEEETC
T ss_pred CCCCcCCCCCCchhHHHHHHHHh---CCeEEEecccccccHHHHHHH---------------HHHHhhc--Cchhhhhhh
Confidence 35689999999999999999999 999999999998776555433 3444443 469999999
Q ss_pred cccCHHHHHHHHHhhc-------CCc-eecCCCceEecC-CeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCCh
Q psy2887 500 EKANSDVFNILLQILD-------DGR-LTDNRGRTINFR-NTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRP 570 (899)
Q Consensus 500 d~~~~~~~~~Ll~~le-------~g~-~~~~~g~~~~~~-~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 570 (899)
++++.++++.+.+.+. ++. -..-.|..+... ++-+.+|.|.+... +..+++
T Consensus 94 nrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~g--------------------r~~LP~ 153 (231)
T PF12774_consen 94 NRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAG--------------------RSELPE 153 (231)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCC--------------------C--S-H
T ss_pred hhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCC--------------------cccCCH
Confidence 9999987766644432 221 111234555443 44466677754320 234666
Q ss_pred hHhhccCeEEEecCCCHHHHHHHH
Q psy2887 571 EFINRIDDIIVFRYLNRKNILSIA 594 (899)
Q Consensus 571 ~l~~R~~~~i~f~~l~~~~~~~i~ 594 (899)
.|..-| +.|.+..|+...+.++.
T Consensus 154 nLk~lF-Rpvam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 154 NLKALF-RPVAMMVPDLSLIAEIL 176 (231)
T ss_dssp HHCTTE-EEEE--S--HHHHHHHH
T ss_pred hHHHHh-heeEEeCCCHHHHHHHH
Confidence 677777 77777777766666553
No 480
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=1.8e-06 Score=90.34 Aligned_cols=127 Identities=17% Similarity=0.063 Sum_probs=87.7
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCC------ccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhc-
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPN------SLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNN- 83 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~------~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~- 83 (899)
+-+..+||+||+|+||+++|.++|+.+.....|. .....+++.+.... .++. -..+.++++.+.+...
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~---~~~~--I~idqiR~l~~~~~~~p 91 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG---KGRL--HSIETPRAIKKQIWIHP 91 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC---CCCc--CcHHHHHHHHHHHhhCc
Confidence 4455678999999999999999999986532111 11122333332210 0011 1233566766666422
Q ss_pred --CCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhccccccccCC
Q psy2887 84 --QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEP 155 (899)
Q Consensus 84 --~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p 155 (899)
++.-|++||++|.|.. ++.|.|+..||. +.+++|..|+.++ .+-|.++|||..+.|+++
T Consensus 92 ~e~~~kv~ii~~ad~mt~--------~AaNaLLK~LEEPp~~~~fiL~~~~~~-----~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 92 YESPYKIYIIHEADRMTL--------DAISAFLKVLEDPPQHGVIILTSAKPQ-----RLPPTIRSRSLSIHIPME 154 (290)
T ss_pred cCCCceEEEEechhhcCH--------HHHHHHHHHhhcCCCCeEEEEEeCChh-----hCcHHHHhcceEEEccch
Confidence 3346999999999964 788999999985 4688888888888 899999999999888775
No 481
>KOG0927|consensus
Probab=98.46 E-value=1.5e-06 Score=94.94 Aligned_cols=63 Identities=19% Similarity=0.220 Sum_probs=44.1
Q ss_pred hhHHHHhhhcCHHHHhccccccccCCC---HHHHHHHHHhhhhhhhc------ccCCCCCHHHHHHHHhhhh
Q psy2887 130 LNEYRQYIEKDAAFERRFQKILVEEPD---IEETISILRGLQKKYEV------HHGVEITDPAIVAASELSY 192 (899)
Q Consensus 130 ~~~~~~~~~ld~al~~Rf~~i~l~~p~---~~e~~~il~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 192 (899)
+..|++...+..+|.-+.+.+.+++|+ +-+.+.+|+.++.+|.. .|.-.+-+.++..++.+..
T Consensus 223 SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~ 294 (614)
T KOG0927|consen 223 SGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDN 294 (614)
T ss_pred CchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecc
Confidence 456777788888888888889999998 46778889988887654 2333444555555555443
No 482
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.46 E-value=4.8e-07 Score=94.24 Aligned_cols=103 Identities=23% Similarity=0.360 Sum_probs=63.6
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcc---cCchHHHHHHHHHHHHHhcCCCEE
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTK---YRGEFEDRLKKILKEISNNQKDII 88 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~---~~g~~~~~l~~~~~~~~~~~~~~i 88 (899)
...|++|+||||||||+||.++|+++... +..++.+....+...-+ ..|..+..+.. .+...+ +
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~-------g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~---~l~~~d---l 170 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKA-------GISVLFITAPDLLSKLKAAFDEGRLEEKLLR---ELKKVD---L 170 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHc-------CCeEEEEEHHHHHHHHHHHHhcCchHHHHHH---HhhcCC---E
Confidence 56799999999999999999999999743 67788887776652111 11223322322 233222 9
Q ss_pred EEEccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChh
Q psy2887 89 IFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLN 131 (899)
Q Consensus 89 L~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~ 131 (899)
|+|||+.....+. .........+....++... |.++|.+
T Consensus 171 LIiDDlG~~~~~~--~~~~~~~q~I~~r~~~~~~--~~tsN~~ 209 (254)
T COG1484 171 LIIDDIGYEPFSQ--EEADLLFQLISRRYESRSL--IITSNLS 209 (254)
T ss_pred EEEecccCccCCH--HHHHHHHHHHHHHHhhccc--eeecCCC
Confidence 9999999875422 1122333344444455555 6666654
No 483
>PRK06921 hypothetical protein; Provisional
Probab=98.44 E-value=9e-07 Score=93.00 Aligned_cols=122 Identities=20% Similarity=0.331 Sum_probs=64.5
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEE
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFI 91 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~i 91 (899)
...+++|+||||+|||+|+.++|+.+.... +..++.+....+... ....+ ......+..+. ...+|+|
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~------g~~v~y~~~~~l~~~--l~~~~-~~~~~~~~~~~---~~dlLiI 183 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK------GVPVLYFPFVEGFGD--LKDDF-DLLEAKLNRMK---KVEVLFI 183 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc------CceEEEEEHHHHHHH--HHHHH-HHHHHHHHHhc---CCCEEEE
Confidence 457899999999999999999999885431 455666665444311 00011 12223333333 2349999
Q ss_pred ccccc-cccCCC-CCc-hhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhcc
Q psy2887 92 DELHT-MIGTGK-VEG-SIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRF 147 (899)
Q Consensus 92 DEi~~-l~~~~~-~~~-~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf 147 (899)
||++. +.+... +.. .....+.+.....++..+ |.+||... .....+++.+.+|+
T Consensus 184 DDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~t-Iitsn~~~-~el~~~~~~l~sRi 240 (266)
T PRK06921 184 DDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPI-LISSELTI-DELLDIDEALGSRI 240 (266)
T ss_pred eccccccCCCccCCHHHHHHHHHHHHHHHHCCCCE-EEECCCCH-HHHhhhhhHHHHHH
Confidence 99954 212110 011 112334444444444444 44556432 11223366777665
No 484
>PF05729 NACHT: NACHT domain
Probab=98.43 E-value=2.2e-06 Score=83.81 Aligned_cols=146 Identities=19% Similarity=0.272 Sum_probs=83.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCccc----------CchHHHHHHHHHHHHHhcCC
Q psy2887 16 PVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKY----------RGEFEDRLKKILKEISNNQK 85 (899)
Q Consensus 16 iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~----------~g~~~~~l~~~~~~~~~~~~ 85 (899)
++|+|+||+|||++++.++..+.....+... ..-++.+.+......... ...........+..+.....
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSK-FPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCccccc-ceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 6889999999999999999988765433211 112223333333211110 00011111112223333456
Q ss_pred CEEEEEccccccccCCCCCchhhHHHhhhhhhcC---CceEEEEecChhHHHHhhhcCHHHHhcc---ccccccCCCHHH
Q psy2887 86 DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR---GELHCIGATTLNEYRQYIEKDAAFERRF---QKILVEEPDIEE 159 (899)
Q Consensus 86 ~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~---~~v~vI~at~~~~~~~~~~ld~al~~Rf---~~i~l~~p~~~e 159 (899)
..+++||.+|.+...............+...+.. ..+.+|.++.+..+. .+.+++ ..+.+++.+.++
T Consensus 82 ~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~-------~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFP-------DLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred ceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHH-------HHHHhcCCCcEEEECCCCHHH
Confidence 8899999999998744221222334445555543 456677676665521 134433 347899999999
Q ss_pred HHHHHHhhhh
Q psy2887 160 TISILRGLQK 169 (899)
Q Consensus 160 ~~~il~~~~~ 169 (899)
..++++.+.+
T Consensus 155 ~~~~~~~~f~ 164 (166)
T PF05729_consen 155 IKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHhh
Confidence 9999887654
No 485
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.42 E-value=8.3e-07 Score=91.36 Aligned_cols=115 Identities=16% Similarity=0.269 Sum_probs=67.1
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcc--cCchHHHHHHHHHHHHHhcCCCEEEEE
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTK--YRGEFEDRLKKILKEISNNQKDIIIFI 91 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~--~~g~~~~~l~~~~~~~~~~~~~~iL~i 91 (899)
.+++|+|+||||||+|+.++|+.+... +..++.++...+...-. +. ........+++.+. ...+|+|
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~-------g~~v~~it~~~l~~~l~~~~~-~~~~~~~~~l~~l~---~~dlLvI 168 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLR-------GKSVLIITVADIMSAMKDTFS-NSETSEEQLLNDLS---NVDLLVI 168 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEEHHHHHHHHHHHHh-hccccHHHHHHHhc---cCCEEEE
Confidence 589999999999999999999998653 56677777766652110 00 00112234555543 2449999
Q ss_pred ccccccccCCCCCchhhHHHhhhhhhc---CCceEEEEecChhH--HHHhhhcCHHHHhcc
Q psy2887 92 DELHTMIGTGKVEGSIDAGNMLKPELS---RGELHCIGATTLNE--YRQYIEKDAAFERRF 147 (899)
Q Consensus 92 DEi~~l~~~~~~~~~~~~~~~l~~~l~---~~~v~vI~at~~~~--~~~~~~ld~al~~Rf 147 (899)
||++....+ ......+..+++ ...-.+|.+||... +.+ .++..+.+|+
T Consensus 169 DDig~~~~s------~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~--~~g~ri~sRl 221 (244)
T PRK07952 169 DEIGVQTES------RYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTK--LLGERVMDRM 221 (244)
T ss_pred eCCCCCCCC------HHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHH--HhChHHHHHH
Confidence 999886421 122224444443 22345555666543 332 2355666665
No 486
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.41 E-value=3.1e-06 Score=90.67 Aligned_cols=95 Identities=18% Similarity=0.156 Sum_probs=63.6
Q ss_pred EEEEEccccccccCCCCCchhhHHHhhhhhhcCC-------------ceEEEEecChhHHHHh--hhcCHHHHhcccccc
Q psy2887 87 IIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCIGATTLNEYRQY--IEKDAAFERRFQKIL 151 (899)
Q Consensus 87 ~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~-------------~v~vI~at~~~~~~~~--~~ld~al~~Rf~~i~ 151 (899)
+|+-|+|+...- .+..+.|+..++.+ ..+||+++|+.+|..+ -....+|++||..+.
T Consensus 238 Gi~~f~Ei~K~~--------~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i~ 309 (361)
T smart00763 238 GILEFVEMFKAD--------IKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRIIKVK 309 (361)
T ss_pred ceEEEeehhcCC--------HHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhceEEEe
Confidence 466666666543 24556666666432 2468999999998765 466899999999999
Q ss_pred ccCCC-HHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhh
Q psy2887 152 VEEPD-IEETISILRGLQKKYEVHHGVEITDPAIVAASEL 190 (899)
Q Consensus 152 l~~p~-~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (899)
++.|. ..+-.+|.++.+..-. ..++.+.+.++..++..
T Consensus 310 vpY~l~~~~E~~Iy~k~~~~s~-~~~~~~aP~~le~aa~~ 348 (361)
T smart00763 310 VPYCLRVSEEAQIYEKLLRNSD-LTEAHIAPHTLEMAALF 348 (361)
T ss_pred CCCcCCHHHHHHHHHHHhccCc-CcccccCchHHHHHHHH
Confidence 99885 5666678887765421 12456677666655544
No 487
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.41 E-value=7.9e-07 Score=95.82 Aligned_cols=119 Identities=20% Similarity=0.281 Sum_probs=69.5
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcc---cCchHHHHHHHHHHHHHhcCCCEEE
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTK---YRGEFEDRLKKILKEISNNQKDIII 89 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~---~~g~~~~~l~~~~~~~~~~~~~~iL 89 (899)
..+++|+||+|||||+|+.++|+++... +..++.+....+...-. +.... .....++.+... -+|
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~-------g~~V~y~t~~~l~~~l~~~~~~~~~--~~~~~~~~l~~~---DLL 250 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDR-------GKSVIYRTADELIEILREIRFNNDK--ELEEVYDLLINC---DLL 250 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHC-------CCeEEEEEHHHHHHHHHHHHhccch--hHHHHHHHhccC---CEE
Confidence 4789999999999999999999998654 56777777766542110 00000 112224444322 399
Q ss_pred EEccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChh--HHHHhhhcCHHHHhccc
Q psy2887 90 FIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLN--EYRQYIEKDAAFERRFQ 148 (899)
Q Consensus 90 ~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~--~~~~~~~ld~al~~Rf~ 148 (899)
+|||++....+. .....+.+.+......+.. +|.+||.. ++.. .+++.+.+|+.
T Consensus 251 IIDDlG~e~~t~--~~~~~Lf~iin~R~~~~k~-tIiTSNl~~~el~~--~~~eri~SRL~ 306 (329)
T PRK06835 251 IIDDLGTEKITE--FSKSELFNLINKRLLRQKK-MIISTNLSLEELLK--TYSERISSRLL 306 (329)
T ss_pred EEeccCCCCCCH--HHHHHHHHHHHHHHHCCCC-EEEECCCCHHHHHH--HHhHHHHHHHH
Confidence 999998764321 1122344444444444443 45555643 3322 24677788774
No 488
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.40 E-value=2.9e-07 Score=90.52 Aligned_cols=99 Identities=22% Similarity=0.309 Sum_probs=58.6
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcC---cccCchHHHHHHHHHHHHHhcCCCE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG---TKYRGEFEDRLKKILKEISNNQKDI 87 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~---~~~~g~~~~~l~~~~~~~~~~~~~~ 87 (899)
..+.|++|+||||||||+||.++++++... +..+..++...+... ....+. ..+.+..+.+. -
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~-------g~~v~f~~~~~L~~~l~~~~~~~~----~~~~~~~l~~~---d 110 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRK-------GYSVLFITASDLLDELKQSRSDGS----YEELLKRLKRV---D 110 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHT-------T--EEEEEHHHHHHHHHCCHCCTT----HCHHHHHHHTS---S
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccC-------CcceeEeecCceeccccccccccc----hhhhcCccccc---c
Confidence 456799999999999999999999988664 667777887766422 111122 33445555433 3
Q ss_pred EEEEccccccccCCCCCchhhHHHhhhhhh----cCCceEEEEecChh
Q psy2887 88 IIFIDELHTMIGTGKVEGSIDAGNMLKPEL----SRGELHCIGATTLN 131 (899)
Q Consensus 88 iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l----~~~~v~vI~at~~~ 131 (899)
+|+|||+.....+ ....+.|..++ ++. ..|.|||..
T Consensus 111 lLilDDlG~~~~~------~~~~~~l~~ii~~R~~~~--~tIiTSN~~ 150 (178)
T PF01695_consen 111 LLILDDLGYEPLS------EWEAELLFEIIDERYERK--PTIITSNLS 150 (178)
T ss_dssp CEEEETCTSS---------HHHHHCTHHHHHHHHHT---EEEEEESS-
T ss_pred Eecccccceeeec------ccccccchhhhhHhhccc--CeEeeCCCc
Confidence 9999999754321 22333344444 433 455677765
No 489
>KOG0066|consensus
Probab=98.40 E-value=1.1e-06 Score=92.73 Aligned_cols=37 Identities=11% Similarity=0.172 Sum_probs=27.2
Q ss_pred chhhHHHHhCCCEEEEEcccc-ccCHHHHHHHHHhhcC
Q psy2887 480 GYLTEIVRRKPYSLILLDEIE-KANSDVFNILLQILDD 516 (899)
Q Consensus 480 ~~l~~~~~~~~~~vl~lDEid-~~~~~~~~~Ll~~le~ 516 (899)
+..+.-+....+.||+|||-. .++-.-+++|-..|.+
T Consensus 712 RValaeLal~~PDvlILDEPTNNLDIESIDALaEAIne 749 (807)
T KOG0066|consen 712 RVALAELALGGPDVLILDEPTNNLDIESIDALAEAINE 749 (807)
T ss_pred HHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHh
Confidence 334444556678999999985 6777788888888875
No 490
>PRK06526 transposase; Provisional
Probab=98.39 E-value=6.3e-07 Score=93.27 Aligned_cols=76 Identities=26% Similarity=0.390 Sum_probs=47.8
Q ss_pred CCCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcC---cccCchHHHHHHHHHHHHHhcCCC
Q psy2887 10 FYFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG---TKYRGEFEDRLKKILKEISNNQKD 86 (899)
Q Consensus 10 ~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~---~~~~g~~~~~l~~~~~~~~~~~~~ 86 (899)
-..+.|++|+||||||||+||.+++..+... +..+.......+... ....| .+...+..+ ..+
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~~~-------g~~v~f~t~~~l~~~l~~~~~~~----~~~~~l~~l---~~~ 160 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQA-------GHRVLFATAAQWVARLAAAHHAG----RLQAELVKL---GRY 160 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHHHC-------CCchhhhhHHHHHHHHHHHHhcC----cHHHHHHHh---ccC
Confidence 3456799999999999999999999988654 444444444433210 00111 122233333 235
Q ss_pred EEEEEcccccccc
Q psy2887 87 IIIFIDELHTMIG 99 (899)
Q Consensus 87 ~iL~iDEi~~l~~ 99 (899)
.+|+|||++.+..
T Consensus 161 dlLIIDD~g~~~~ 173 (254)
T PRK06526 161 PLLIVDEVGYIPF 173 (254)
T ss_pred CEEEEcccccCCC
Confidence 5999999998754
No 491
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.39 E-value=1.2e-06 Score=95.16 Aligned_cols=161 Identities=19% Similarity=0.217 Sum_probs=99.8
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcC---ccc----CchHHHHH---HHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG---TKY----RGEFEDRL---KKILKEI 80 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~---~~~----~g~~~~~l---~~~~~~~ 80 (899)
.+..+|||.|++||||-.+|++|.+.-... +.+++.+||..+..+ +.. .|.+.-.+ ..-|+-
T Consensus 244 ~Sd~tVLi~GETGtGKElvAraIH~~S~R~-------~kPfV~~NCAAlPesLlESELFGHeKGAFTGA~~~r~GrFEl- 315 (550)
T COG3604 244 KSDSTVLIRGETGTGKELVARAIHQLSPRR-------DKPFVKLNCAALPESLLESELFGHEKGAFTGAINTRRGRFEL- 315 (550)
T ss_pred cCCCeEEEecCCCccHHHHHHHHHhhCccc-------CCCceeeeccccchHHHHHHHhcccccccccchhccCcceee-
Confidence 466789999999999999999999876444 677888998766411 000 11110000 011111
Q ss_pred HhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC-------------ceEEEEecChhHHHH--hhhcCHHHHh
Q psy2887 81 SNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCIGATTLNEYRQ--YIEKDAAFER 145 (899)
Q Consensus 81 ~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~-------------~v~vI~at~~~~~~~--~~~ld~al~~ 145 (899)
..++-||+|||..|.- ..+..|+..++.+ +|.+|+|||..-... .-+.-..|.-
T Consensus 316 ---AdGGTLFLDEIGelPL--------~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~~~V~~G~FRaDLYy 384 (550)
T COG3604 316 ---ADGGTLFLDEIGELPL--------ALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLEEMVRDGEFRADLYY 384 (550)
T ss_pred ---cCCCeEechhhccCCH--------HHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHHHHHHcCcchhhhhh
Confidence 2255899999999965 4555677777433 578999999864211 1112234444
Q ss_pred ccccccccCCCH----HHHHHHHHhhhhhhhccc---CCCCCHHHHHHHHhh
Q psy2887 146 RFQKILVEEPDI----EETISILRGLQKKYEVHH---GVEITDPAIVAASEL 190 (899)
Q Consensus 146 Rf~~i~l~~p~~----~e~~~il~~~~~~~~~~~---~~~~~~~~~~~~~~~ 190 (899)
|+.++.+..|.. ++..-+...+++++.... .+.+++++++.+..+
T Consensus 385 RLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y 436 (550)
T COG3604 385 RLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSY 436 (550)
T ss_pred cccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcC
Confidence 887655555543 334444566777665433 457899998877554
No 492
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.38 E-value=1.8e-06 Score=89.84 Aligned_cols=189 Identities=20% Similarity=0.316 Sum_probs=94.7
Q ss_pred CChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchh------
Q psy2887 391 VGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS------ 464 (899)
Q Consensus 391 ~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~------ 464 (899)
+|.+.-++.|.+.+.... ..+++++||.|+|||++++.+.+.+...+...+.++...........
T Consensus 2 ~gR~~el~~l~~~l~~~~---------~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 72 (234)
T PF01637_consen 2 FGREKELEKLKELLESGP---------SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEET 72 (234)
T ss_dssp -S-HHHHHHHHHCHHH-----------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhc---------CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHH
Confidence 577777888877776532 12699999999999999999999883322233333322211110000
Q ss_pred -------hccCCC-CCccc-----------ccccchhhHHHHhC-CCEEEEEccccccC------HHHHHHHHHhhcCCc
Q psy2887 465 -------RLIGAP-PGYIG-----------YEEGGYLTEIVRRK-PYSLILLDEIEKAN------SDVFNILLQILDDGR 518 (899)
Q Consensus 465 -------~l~g~~-~~~~g-----------~~~~~~l~~~~~~~-~~~vl~lDEid~~~------~~~~~~Ll~~le~g~ 518 (899)
..++.. ++..+ ...-..+.+.+... ...||+|||++.+. +.....|...++...
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~ 152 (234)
T PF01637_consen 73 SLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL 152 (234)
T ss_dssp HHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc
Confidence 001110 00000 00112333444443 34799999999888 566777777776511
Q ss_pred eecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHH
Q psy2887 519 LTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQL 598 (899)
Q Consensus 519 ~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l 598 (899)
...+..+|+++.... +.. .+. .-.+.+.+|+.. +.+.|++.++..+++...+
T Consensus 153 ---------~~~~~~~v~~~S~~~--~~~---------------~~~-~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~ 204 (234)
T PF01637_consen 153 ---------SQQNVSIVITGSSDS--LME---------------EFL-DDKSPLFGRFSH-IELKPLSKEEAREFLKELF 204 (234)
T ss_dssp -----------TTEEEEEEESSHH--HHH---------------HTT--TTSTTTT---E-EEE----HHHHHHHHHHHH
T ss_pred ---------ccCCceEEEECCchH--HHH---------------Hhh-cccCccccccce-EEEeeCCHHHHHHHHHHHH
Confidence 124444555444211 111 000 113458899965 9999999999999987765
Q ss_pred HHHHHHHHhcCcceeecHHHHHHHHh
Q psy2887 599 NILKNKLLKMNMDLKISKAALKKISN 624 (899)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~L~~ 624 (899)
.. . ..+.++++.++.+..
T Consensus 205 ~~-------~-~~~~~~~~~~~~i~~ 222 (234)
T PF01637_consen 205 KE-------L-IKLPFSDEDIEEIYS 222 (234)
T ss_dssp HC-------C-------HHHHHHHHH
T ss_pred HH-------h-hcccCCHHHHHHHHH
Confidence 32 1 122347777777655
No 493
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.37 E-value=1.8e-07 Score=88.44 Aligned_cols=113 Identities=18% Similarity=0.279 Sum_probs=70.7
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
....+|+|+|++||||+++|+++....... ..+++.+++..+. .++++.+ .++.||
T Consensus 19 ~~~~pvli~GE~GtGK~~~A~~lh~~~~~~-------~~~~~~~~~~~~~-------------~~~l~~a----~~gtL~ 74 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLARALHRYSGRA-------NGPFIVIDCASLP-------------AELLEQA----KGGTLY 74 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHHHCCHHTTTTC-------CS-CCCCCHHCTC-------------HHHHHHC----TTSEEE
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHHhhcCcc-------CCCeEEechhhCc-------------HHHHHHc----CCCEEE
Confidence 456789999999999999999998865321 2344444443321 3344443 355899
Q ss_pred EccccccccCCCCCchhhHHHhhhhhhc---CCceEEEEecChhH--HHHhhhcCHHHHhccccccccCC
Q psy2887 91 IDELHTMIGTGKVEGSIDAGNMLKPELS---RGELHCIGATTLNE--YRQYIEKDAAFERRFQKILVEEP 155 (899)
Q Consensus 91 iDEi~~l~~~~~~~~~~~~~~~l~~~l~---~~~v~vI~at~~~~--~~~~~~ld~al~~Rf~~i~l~~p 155 (899)
|+|++.|.. +....|...++ +.++.+|++++.+- ....-.+++.|..||..+.+..|
T Consensus 75 l~~i~~L~~--------~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~~i~lP 136 (138)
T PF14532_consen 75 LKNIDRLSP--------EAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDLYYRLSQLEIHLP 136 (138)
T ss_dssp EECGCCS-H--------HHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHHHHHCSTCEEEE-
T ss_pred ECChHHCCH--------HHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHHHHHhCCCEEeCC
Confidence 999999965 44445555553 45778888777543 12233567888888886555444
No 494
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.36 E-value=4.8e-07 Score=84.78 Aligned_cols=108 Identities=19% Similarity=0.358 Sum_probs=70.6
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccC-----CCceEEecccccccccch----hhccCCCCCccccccc---chhhHHHH
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNN-----EESIIRIDMSEFIEKHSI----SRLIGAPPGYIGYEEG---GYLTEIVR 487 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~-----~~~~~~~~~~~~~~~~~~----~~l~g~~~~~~g~~~~---~~l~~~~~ 487 (899)
.++++||||+|||++++.+++.+... ..+++.++++...+.... ...++..... +.+.. ..+...+.
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-RQTSDELRSLLIDALD 84 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-TS-HHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-cCCHHHHHHHHHHHHH
Confidence 68999999999999999999988432 467778877765532222 2223332211 01111 34555566
Q ss_pred hCCCEEEEEcccccc-CHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCC
Q psy2887 488 RKPYSLILLDEIEKA-NSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLG 541 (899)
Q Consensus 488 ~~~~~vl~lDEid~~-~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~ 541 (899)
.....+|+|||+|.+ ....++.|..++++ .++-+|++++..
T Consensus 85 ~~~~~~lviDe~~~l~~~~~l~~l~~l~~~-------------~~~~vvl~G~~~ 126 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLFSDEFLEFLRSLLNE-------------SNIKVVLVGTPE 126 (131)
T ss_dssp HCTEEEEEEETTHHHHTHHHHHHHHHHTCS-------------CBEEEEEEESST
T ss_pred hcCCeEEEEeChHhcCCHHHHHHHHHHHhC-------------CCCeEEEEEChh
Confidence 666579999999999 98999999888874 455566666643
No 495
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.35 E-value=1.6e-06 Score=81.19 Aligned_cols=110 Identities=14% Similarity=0.241 Sum_probs=65.9
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcC------------cccC--chHHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG------------TKYR--GEFEDRLKKI 76 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~------------~~~~--g~~~~~l~~~ 76 (899)
+.++.++++||||+|||++++.+++.+.....+.. ..+++.+++...... .... .........+
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~ 79 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKN--HPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLL 79 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC--CEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccC--CCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHH
Confidence 45678999999999999999999998743100000 345666665443210 0111 1233333344
Q ss_pred HHHHHhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecCh
Q psy2887 77 LKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTL 130 (899)
Q Consensus 77 ~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~ 130 (899)
.+.+. .....+|+|||+|.|. + ....+.|+..++...+.+|.++++
T Consensus 80 ~~~l~-~~~~~~lviDe~~~l~-~------~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 80 IDALD-RRRVVLLVIDEADHLF-S------DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHH-HCTEEEEEEETTHHHH-T------HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHH-hcCCeEEEEeChHhcC-C------HHHHHHHHHHHhCCCCeEEEEECh
Confidence 44444 3334699999999986 1 577788888888888888888776
No 496
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=8.9e-06 Score=86.42 Aligned_cols=135 Identities=14% Similarity=0.126 Sum_probs=92.1
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCC---CCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhc----C
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGE---VPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNN----Q 84 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~---~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~----~ 84 (899)
-..-.||+|+.|.||+++++.+++.+.... .+..-....+..++.. |. .. ....++++.+.+.-. +
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~----g~-~i--~vd~Ir~l~~~~~~~~~~~~ 89 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF----DK-DL--SKSEFLSAINKLYFSSFVQS 89 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC----CC-cC--CHHHHHHHHHHhccCCcccC
Confidence 344567999999999999999999884322 1100001122222210 11 11 123566666666422 3
Q ss_pred CCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHHHHHH
Q psy2887 85 KDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETIS 162 (899)
Q Consensus 85 ~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~ 162 (899)
..-|++||+++.+.. .+.|.|+..++. ..+++|..|+.++ .+-|++++|+..+.|.+|+.++..+
T Consensus 90 ~~KvvII~~~e~m~~--------~a~NaLLK~LEEPp~~t~~il~~~~~~-----kll~TI~SRc~~~~f~~l~~~~l~~ 156 (299)
T PRK07132 90 QKKILIIKNIEKTSN--------SLLNALLKTIEEPPKDTYFLLTTKNIN-----KVLPTIVSRCQVFNVKEPDQQKILA 156 (299)
T ss_pred CceEEEEecccccCH--------HHHHHHHHHhhCCCCCeEEEEEeCChH-----hChHHHHhCeEEEECCCCCHHHHHH
Confidence 567999999988853 678899999985 3577777777666 7889999999999999999999888
Q ss_pred HHHh
Q psy2887 163 ILRG 166 (899)
Q Consensus 163 il~~ 166 (899)
+|..
T Consensus 157 ~l~~ 160 (299)
T PRK07132 157 KLLS 160 (299)
T ss_pred HHHH
Confidence 7763
No 497
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.35 E-value=3.3e-06 Score=97.10 Aligned_cols=155 Identities=17% Similarity=0.192 Sum_probs=98.5
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHH-HHHHHH----------
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLK-KILKEI---------- 80 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~-~~~~~~---------- 80 (899)
...+++++|++||||+++|+++....... ..+++.++|..+.. . .+. .+|...
T Consensus 161 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~-------~~~~v~v~c~~~~~--~-------~~~~~lfg~~~~~~~~~~~~ 224 (445)
T TIGR02915 161 SDITVLLLGESGTGKEVLARALHQLSDRK-------DKRFVAINCAAIPE--N-------LLESELFGYEKGAFTGAVKQ 224 (445)
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhCCcC-------CCCeEEEECCCCCh--H-------HHHHHhcCCCCCCcCCCccC
Confidence 45689999999999999999998764222 56788888876521 0 111 111100
Q ss_pred ----HhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC-------------ceEEEEecChhHHH--HhhhcCH
Q psy2887 81 ----SNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCIGATTLNEYR--QYIEKDA 141 (899)
Q Consensus 81 ----~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~-------------~v~vI~at~~~~~~--~~~~ld~ 141 (899)
.....+++|||||++.|.. ..+..|...++.+ ++.+|++|+..--. ..-...+
T Consensus 225 ~~g~~~~a~~gtl~l~~i~~l~~--------~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~ 296 (445)
T TIGR02915 225 TLGKIEYAHGGTLFLDEIGDLPL--------NLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFRE 296 (445)
T ss_pred CCCceeECCCCEEEEechhhCCH--------HHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccH
Confidence 0012356899999999965 4555666666432 46889888765311 1124567
Q ss_pred HHHhccccccccCCCHHHH----HHHHHhhhhhhhcccC---CCCCHHHHHHHHhh
Q psy2887 142 AFERRFQKILVEEPDIEET----ISILRGLQKKYEVHHG---VEITDPAIVAASEL 190 (899)
Q Consensus 142 al~~Rf~~i~l~~p~~~e~----~~il~~~~~~~~~~~~---~~~~~~~~~~~~~~ 190 (899)
.|..|+..+.+..|...+| ..+++.+++++....+ ..++++++..+...
T Consensus 297 ~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 352 (445)
T TIGR02915 297 DLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAH 352 (445)
T ss_pred HHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhC
Confidence 7888887655555554444 4456677766654333 46899998877554
No 498
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=98.34 E-value=6.5e-06 Score=82.01 Aligned_cols=135 Identities=17% Similarity=0.162 Sum_probs=96.1
Q ss_pred eEEEEecCCC-ChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCC------CCcccccccchhhHHHHhC--
Q psy2887 419 GSFMFLGPTG-VGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAP------PGYIGYEEGGYLTEIVRRK-- 489 (899)
Q Consensus 419 ~~ill~GppG-tGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~------~~~~g~~~~~~l~~~~~~~-- 489 (899)
+.+||.|..+ +||..++..+++.++..+ +...... .-.++... ...++.++.+.+...+...
T Consensus 16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~-----i~~~~HP----D~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~ 86 (263)
T PRK06581 16 NSWLIEAENIEQALKDLEKFIYIKLFKNS-----IPLENNP----DYHFIARETSATSNAKNISIEQIRKLQDFLSKTSA 86 (263)
T ss_pred heeeEeCCChhhHHHHHHHHHHHHHhccC-----cccCCCC----CEEEEeccccccccCCcccHHHHHHHHHHHhhCcc
Confidence 3799999998 999999999999985432 1111111 11122211 1234555556666666543
Q ss_pred --CCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhc
Q psy2887 490 --PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIY 567 (899)
Q Consensus 490 --~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 567 (899)
+..|++|+++|++...+.|+||+.||+ +..++++|++|+....
T Consensus 87 ~g~~KViII~~ae~mt~~AANALLKtLEE-----------PP~~t~fILit~~~~~------------------------ 131 (263)
T PRK06581 87 ISGYKVAIIYSAELMNLNAANSCLKILED-----------APKNSYIFLITSRAAS------------------------ 131 (263)
T ss_pred cCCcEEEEEechHHhCHHHHHHHHHhhcC-----------CCCCeEEEEEeCChhh------------------------
Confidence 457999999999999999999999999 6688888887775433
Q ss_pred CChhHhhccCeEEEecCCCHHHHHHHHHHHH
Q psy2887 568 FRPEFINRIDDIIVFRYLNRKNILSIANIQL 598 (899)
Q Consensus 568 ~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l 598 (899)
+.|-++||| ..+.|..+...+..+.....+
T Consensus 132 LLpTIrSRC-q~i~~~~p~~~~~~e~~~~~~ 161 (263)
T PRK06581 132 IISTIRSRC-FKINVRSSILHAYNELYSQFI 161 (263)
T ss_pred CchhHhhce-EEEeCCCCCHHHHHHHHHHhc
Confidence 556689999 899999999877766654443
No 499
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.33 E-value=8.3e-07 Score=79.59 Aligned_cols=94 Identities=20% Similarity=0.467 Sum_probs=59.4
Q ss_pred EEEecCCCChHHHHHHHHHHHhccCC-----CceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEE
Q psy2887 421 FMFLGPTGVGKTELCKTLSACIFNNE-----ESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLIL 495 (899)
Q Consensus 421 ill~GppGtGKT~lA~~la~~l~~~~-----~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~ 495 (899)
|.|+||||+|||++|+.|++.+...- ..+...+. ...+ +-|+. ...|++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~--------~~~~------w~gY~------------~q~vvi 54 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNP--------GDKF------WDGYQ------------GQPVVI 54 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCC--------ccch------hhccC------------CCcEEE
Confidence 47899999999999999999884211 11111110 0000 11111 124999
Q ss_pred EccccccCHH----HHHHHHHhhcCCceecCC----CceEecCCeEEEEecCC
Q psy2887 496 LDEIEKANSD----VFNILLQILDDGRLTDNR----GRTINFRNTIIVMTSNL 540 (899)
Q Consensus 496 lDEid~~~~~----~~~~Ll~~le~g~~~~~~----g~~~~~~~~~iI~tsn~ 540 (899)
+||+...... ....|+++++.-.+.... .+...+...+||+|||.
T Consensus 55 ~DD~~~~~~~~~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN~ 107 (107)
T PF00910_consen 55 IDDFGQDNDGYNYSDESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSNF 107 (107)
T ss_pred EeecCccccccchHHHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCCC
Confidence 9999877754 678889999876555321 23345666789999983
No 500
>PHA00729 NTP-binding motif containing protein
Probab=98.32 E-value=1.8e-06 Score=86.62 Aligned_cols=115 Identities=14% Similarity=0.210 Sum_probs=67.4
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHcCCCC------CccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCE
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRIINGEVP------NSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDI 87 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l~~~~~p------~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~ 87 (899)
.|++|+|+|||||||||.++|..+.....+ ....+...+.++...+. ..++..+... ....
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll----------~~L~~a~~~~---~~~d 84 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDAL----------EKIQDAIDND---YRIP 84 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHH----------HHHHHHHhcC---CCCC
Confidence 389999999999999999999987411000 00112233333333222 1233222211 1123
Q ss_pred EEEEccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHHHHHHHHHh
Q psy2887 88 IIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRG 166 (899)
Q Consensus 88 iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~il~~ 166 (899)
+|+|||+..=.... . .-. + .+..++.+.+++++|++.+.|..+++++..+.|+.
T Consensus 85 lLIIDd~G~~~~~~------~---wh~---~-------------~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 85 LIIFDDAGIWLSKY------V---WYE---D-------------YMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred EEEEeCCchhhccc------c---hhh---h-------------ccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 89999976543211 0 000 0 01124467889999999999999999988888864
Done!