Query psy2887
Match_columns 899
No_of_seqs 666 out of 5303
Neff 9.3
Searched_HMMs 29240
Date Fri Aug 16 19:28:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2887.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2887hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qvr_A CLPB protein; coiled co 100.0 4.7E-70 1.6E-74 669.1 56.6 650 10-675 188-839 (854)
2 3pxi_A Negative regulator of g 100.0 3.8E-61 1.3E-65 584.6 44.6 547 10-675 198-744 (758)
3 1r6b_X CLPA protein; AAA+, N-t 100.0 1.6E-59 5.3E-64 572.0 47.3 529 10-674 204-734 (758)
4 2dfj_A Diadenosinetetraphospha 100.0 8.1E-43 2.8E-47 367.5 22.3 263 630-898 3-268 (280)
5 3cf2_A TER ATPase, transitiona 100.0 5.9E-42 2E-46 404.2 27.1 423 11-639 236-690 (806)
6 4fcw_A Chaperone protein CLPB; 100.0 8.7E-32 3E-36 292.8 26.2 294 374-675 3-298 (311)
7 1ypw_A Transitional endoplasmi 100.0 1.6E-31 5.3E-36 323.0 17.2 395 11-599 236-662 (806)
8 3pxg_A Negative regulator of g 100.0 2.2E-28 7.4E-33 278.9 23.2 247 10-277 198-444 (468)
9 2qjc_A Diadenosine tetraphosph 99.9 7.9E-27 2.7E-31 244.6 13.1 212 629-898 20-246 (262)
10 3hws_A ATP-dependent CLP prote 99.9 2.4E-25 8.1E-30 246.8 12.4 255 380-652 7-324 (363)
11 4b4t_J 26S protease regulatory 99.9 2.5E-23 8.7E-28 225.6 22.3 177 11-215 180-369 (405)
12 2z72_A Protein-tyrosine-phosph 99.9 9.6E-24 3.3E-28 229.5 15.7 226 629-898 72-328 (342)
13 4b4t_I 26S protease regulatory 99.9 5.8E-23 2E-27 222.9 19.7 177 11-215 214-403 (437)
14 4b4t_H 26S protease regulatory 99.9 2.2E-22 7.4E-27 220.7 22.1 177 11-215 241-430 (467)
15 4b4t_M 26S protease regulatory 99.9 6.2E-23 2.1E-27 226.5 16.8 177 11-215 213-402 (434)
16 4b4t_L 26S protease subunit RP 99.9 4.6E-22 1.6E-26 219.8 20.5 177 11-215 213-402 (437)
17 4b4t_K 26S protease regulatory 99.9 4.5E-22 1.5E-26 219.6 19.6 177 11-215 204-394 (428)
18 1um8_A ATP-dependent CLP prote 99.9 3.7E-22 1.3E-26 222.3 17.6 255 379-650 12-339 (376)
19 1ojl_A Transcriptional regulat 99.9 7.9E-22 2.7E-26 211.7 17.4 227 388-647 2-232 (304)
20 3m6a_A ATP-dependent protease 99.9 2E-22 6.9E-27 233.3 12.6 273 322-649 29-314 (543)
21 1ofh_A ATP-dependent HSL prote 99.9 5.5E-21 1.9E-25 207.3 19.5 232 380-649 7-272 (310)
22 1g41_A Heat shock protein HSLU 99.9 1E-20 3.4E-25 209.2 20.7 248 380-655 7-412 (444)
23 2bjv_A PSP operon transcriptio 99.9 8.9E-21 3.1E-25 200.5 17.7 226 388-647 6-237 (265)
24 4b4t_J 26S protease regulatory 99.8 1.4E-20 4.7E-25 204.3 18.6 189 387-639 147-361 (405)
25 1ny5_A Transcriptional regulat 99.8 1.5E-19 5.2E-24 200.7 25.9 226 389-647 138-367 (387)
26 3cf2_A TER ATPase, transitiona 99.8 8.9E-21 3.1E-25 224.1 11.8 178 10-215 508-698 (806)
27 4b4t_I 26S protease regulatory 99.8 2.4E-20 8.1E-25 202.5 13.9 188 388-639 182-395 (437)
28 1g5b_A Serine/threonine protei 99.8 5.5E-21 1.9E-25 195.9 8.2 196 628-892 13-220 (221)
29 3eie_A Vacuolar protein sortin 99.8 2.9E-19 9.9E-24 194.1 20.7 177 10-213 48-233 (322)
30 4b4t_M 26S protease regulatory 99.8 4.7E-20 1.6E-24 203.6 13.3 189 387-639 180-394 (434)
31 4b4t_H 26S protease regulatory 99.8 1.4E-19 4.8E-24 198.5 16.8 188 388-639 209-422 (467)
32 3dzd_A Transcriptional regulat 99.8 1.8E-19 6E-24 198.3 17.7 225 389-647 130-358 (368)
33 4b4t_L 26S protease subunit RP 99.8 2.3E-19 7.9E-24 198.2 17.1 188 388-639 181-394 (437)
34 1xwi_A SKD1 protein; VPS4B, AA 99.8 5.5E-19 1.9E-23 191.3 19.6 178 11-214 43-229 (322)
35 2qp9_X Vacuolar protein sortin 99.8 7.9E-19 2.7E-23 192.8 20.4 179 10-215 81-268 (355)
36 3syl_A Protein CBBX; photosynt 99.8 4.9E-19 1.7E-23 191.8 17.9 216 376-647 19-259 (309)
37 4b4t_K 26S protease regulatory 99.8 2E-19 6.9E-24 198.5 14.3 189 387-639 171-386 (428)
38 2c9o_A RUVB-like 1; hexameric 99.8 1.4E-19 4.6E-24 206.1 8.9 139 11-165 61-236 (456)
39 3eie_A Vacuolar protein sortin 99.8 4.1E-18 1.4E-22 185.1 17.5 194 388-639 18-227 (322)
40 1xwi_A SKD1 protein; VPS4B, AA 99.8 1.8E-17 6.2E-22 179.4 20.6 195 388-639 12-222 (322)
41 3d8b_A Fidgetin-like protein 1 99.8 1.9E-17 6.6E-22 182.2 20.0 175 11-212 115-299 (357)
42 3vfd_A Spastin; ATPase, microt 99.8 9.7E-18 3.3E-22 187.2 17.7 174 11-211 146-329 (389)
43 2zan_A Vacuolar protein sortin 99.7 7.3E-18 2.5E-22 190.7 16.1 178 11-214 165-351 (444)
44 2qp9_X Vacuolar protein sortin 99.7 1.3E-17 4.6E-22 183.0 17.2 194 388-639 51-260 (355)
45 3hu3_A Transitional endoplasmi 99.7 2.2E-17 7.5E-22 187.5 19.4 177 11-215 236-422 (489)
46 3b9p_A CG5977-PA, isoform A; A 99.7 3E-17 1E-21 176.6 19.3 174 12-212 53-237 (297)
47 1jbk_A CLPB protein; beta barr 99.7 7.1E-18 2.4E-22 168.8 13.0 154 11-164 41-194 (195)
48 4akg_A Glutathione S-transfera 99.7 9E-16 3.1E-20 201.7 35.6 139 13-170 1267-1433(2695)
49 3h4m_A Proteasome-activating n 99.7 1.3E-16 4.5E-21 170.4 22.7 179 11-217 49-240 (285)
50 3cf0_A Transitional endoplasmi 99.7 1.1E-17 3.8E-22 179.7 13.6 177 11-215 47-236 (301)
51 2ce7_A Cell division protein F 99.7 6.8E-17 2.3E-21 181.6 20.2 177 12-216 48-237 (476)
52 1fjm_A Protein serine/threonin 99.7 7.8E-18 2.7E-22 179.0 11.8 148 584-753 29-181 (330)
53 2zan_A Vacuolar protein sortin 99.7 9.7E-17 3.3E-21 181.5 20.2 195 388-639 134-344 (444)
54 2qz4_A Paraplegin; AAA+, SPG7, 99.7 7.6E-17 2.6E-21 170.0 17.6 179 11-216 37-230 (262)
55 3pfi_A Holliday junction ATP-d 99.7 2.4E-16 8.1E-21 172.9 20.9 178 388-624 29-214 (338)
56 2ie4_C PP2A-alpha;, serine/thr 99.7 4.1E-17 1.4E-21 172.6 14.0 151 583-754 21-176 (309)
57 3syl_A Protein CBBX; photosynt 99.7 1.7E-16 5.8E-21 171.7 18.5 191 10-213 64-260 (309)
58 3t15_A Ribulose bisphosphate c 99.7 7.9E-17 2.7E-21 172.0 15.2 158 11-196 34-217 (293)
59 3cf0_A Transitional endoplasmi 99.7 1.9E-16 6.7E-21 170.0 17.7 159 388-598 15-199 (301)
60 3t15_A Ribulose bisphosphate c 99.7 5.2E-17 1.8E-21 173.4 12.9 163 394-598 13-198 (293)
61 3n70_A Transport activator; si 99.7 5.6E-17 1.9E-21 154.0 11.4 143 389-586 2-145 (145)
62 2p65_A Hypothetical protein PF 99.7 1.1E-16 3.6E-21 159.3 13.9 146 11-156 41-187 (187)
63 3vfd_A Spastin; ATPase, microt 99.7 2.2E-16 7.6E-21 176.2 17.0 182 388-624 115-312 (389)
64 3d8b_A Fidgetin-like protein 1 99.7 2.9E-16 9.9E-21 172.8 17.3 195 388-639 84-294 (357)
65 2x8a_A Nuclear valosin-contain 99.7 3E-16 1E-20 165.5 16.3 179 13-215 44-233 (274)
66 1lv7_A FTSH; alpha/beta domain 99.7 4.5E-16 1.5E-20 163.5 17.3 177 12-216 44-233 (257)
67 3u61_B DNA polymerase accessor 99.7 5.9E-16 2E-20 168.6 18.5 189 388-647 26-220 (324)
68 3b9p_A CG5977-PA, isoform A; A 99.7 7.1E-16 2.4E-20 165.8 17.8 195 388-638 21-231 (297)
69 3pvs_A Replication-associated 99.7 2.9E-16 9.8E-21 176.7 15.1 188 388-648 26-220 (447)
70 2qz4_A Paraplegin; AAA+, SPG7, 99.7 1.8E-15 6.3E-20 159.4 18.7 165 388-600 6-192 (262)
71 2ce7_A Cell division protein F 99.6 1.2E-15 4.1E-20 171.5 16.9 159 388-598 16-199 (476)
72 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 9.7E-16 3.3E-20 173.6 15.9 207 376-625 10-237 (500)
73 2r44_A Uncharacterized protein 99.6 1.1E-15 3.9E-20 166.8 16.0 205 378-624 17-237 (331)
74 1lv7_A FTSH; alpha/beta domain 99.6 2.2E-15 7.5E-20 158.2 16.8 191 388-639 12-224 (257)
75 1hqc_A RUVB; extended AAA-ATPa 99.6 3.9E-15 1.3E-19 162.2 19.3 178 388-624 12-198 (324)
76 3pvs_A Replication-associated 99.6 1.6E-15 5.5E-20 170.6 15.9 167 14-216 51-223 (447)
77 3h4m_A Proteasome-activating n 99.6 2.1E-15 7.2E-20 161.0 16.1 162 388-598 17-201 (285)
78 2r62_A Cell division protease 99.6 8.2E-17 2.8E-21 170.3 4.1 178 11-216 42-234 (268)
79 3hu3_A Transitional endoplasmi 99.6 1.2E-15 4.1E-20 173.3 13.8 159 388-598 204-385 (489)
80 3co5_A Putative two-component 99.6 3.2E-16 1.1E-20 148.3 6.5 138 388-585 4-142 (143)
81 3uk6_A RUVB-like 2; hexameric 99.6 5.5E-15 1.9E-19 164.1 16.8 198 388-625 44-290 (368)
82 2dhr_A FTSH; AAA+ protein, hex 99.6 2.2E-15 7.4E-20 170.4 13.6 176 12-216 63-252 (499)
83 1aui_A Calcineurin, serine/thr 99.6 1.7E-15 5.9E-20 166.8 11.1 119 629-753 84-207 (521)
84 1ixz_A ATP-dependent metallopr 99.6 1.2E-14 4E-19 152.3 16.8 175 13-216 49-237 (254)
85 1g8p_A Magnesium-chelatase 38 99.6 2.2E-14 7.6E-19 158.0 18.7 204 388-627 24-281 (350)
86 1ofh_A ATP-dependent HSL prote 99.6 1E-14 3.5E-19 157.8 15.2 188 11-214 48-272 (310)
87 3pfi_A Holliday junction ATP-d 99.6 2.1E-14 7.2E-19 157.3 17.8 162 11-216 53-235 (338)
88 1ypw_A Transitional endoplasmi 99.6 2.3E-16 7.7E-21 190.7 2.2 177 11-215 509-698 (806)
89 3vkg_A Dynein heavy chain, cyt 99.6 1.3E-13 4.3E-18 182.0 27.9 453 12-600 1303-1828(3245)
90 3te6_A Regulatory protein SIR3 99.6 4.3E-15 1.5E-19 157.8 11.1 221 390-650 22-286 (318)
91 1iy2_A ATP-dependent metallopr 99.6 2.7E-14 9.4E-19 151.6 16.8 175 13-216 73-261 (278)
92 2chg_A Replication factor C sm 99.6 5E-14 1.7E-18 144.2 18.1 168 388-624 17-191 (226)
93 3icf_A PPT, serine/threonine-p 99.6 5.6E-15 1.9E-19 156.5 11.1 118 630-752 66-189 (335)
94 1iqp_A RFCS; clamp loader, ext 99.6 4.3E-14 1.5E-18 154.1 18.2 168 388-624 25-199 (327)
95 3e7a_A PP-1A, serine/threonine 99.6 1E-14 3.6E-19 152.1 12.4 148 584-753 28-180 (299)
96 2chq_A Replication factor C sm 99.6 3.1E-14 1.1E-18 154.5 16.4 167 388-624 17-191 (319)
97 2r62_A Cell division protease 99.5 3.1E-15 1.1E-19 158.1 7.3 162 388-598 11-196 (268)
98 3k1j_A LON protease, ATP-depen 99.5 2.4E-14 8.4E-19 168.4 15.2 206 388-627 41-328 (604)
99 1d2n_A N-ethylmaleimide-sensit 99.5 6.2E-15 2.1E-19 156.1 9.0 189 386-635 31-237 (272)
100 3ll8_A Serine/threonine-protei 99.5 1.1E-14 3.9E-19 154.5 10.5 120 628-753 70-194 (357)
101 1sxj_D Activator 1 41 kDa subu 99.5 2E-14 7E-19 158.5 12.9 198 388-646 37-238 (353)
102 3h63_A Serine/threonine-protei 99.5 1.5E-14 5.2E-19 152.0 11.0 115 630-749 62-181 (315)
103 3u61_B DNA polymerase accessor 99.5 1.4E-14 4.9E-19 157.6 11.2 163 13-212 48-220 (324)
104 4akg_A Glutathione S-transfera 99.5 1E-12 3.6E-17 173.0 30.4 123 13-164 645-789 (2695)
105 2x8a_A Nuclear valosin-contain 99.5 8.8E-14 3E-18 146.5 16.3 159 388-598 10-191 (274)
106 2dhr_A FTSH; AAA+ protein, hex 99.5 2E-14 7E-19 162.5 11.9 162 388-598 31-214 (499)
107 3m6a_A ATP-dependent protease 99.5 1.9E-14 6.3E-19 166.6 11.5 160 12-192 107-296 (543)
108 3te6_A Regulatory protein SIR3 99.5 6.1E-14 2.1E-18 148.9 14.3 192 11-216 43-287 (318)
109 3uk6_A RUVB-like 2; hexameric 99.5 1.8E-13 6.1E-18 151.9 18.6 175 13-217 70-312 (368)
110 1sxj_C Activator 1 40 kDa subu 99.5 1.3E-13 4.5E-18 150.9 16.3 167 388-624 25-199 (340)
111 1wao_1 Serine/threonine protei 99.5 4.5E-14 1.5E-18 161.9 12.8 116 629-749 214-334 (477)
112 1sxj_B Activator 1 37 kDa subu 99.5 1.5E-13 5.3E-18 149.3 16.5 183 388-646 21-212 (323)
113 1hqc_A RUVB; extended AAA-ATPa 99.5 2.6E-13 9E-18 147.6 18.1 159 12-213 37-216 (324)
114 1l8q_A Chromosomal replication 99.5 6.3E-14 2.2E-18 152.4 12.8 154 420-624 39-196 (324)
115 2qby_B CDC6 homolog 3, cell di 99.5 1.9E-13 6.4E-18 152.6 16.4 211 388-647 20-249 (384)
116 1jr3_A DNA polymerase III subu 99.5 7.8E-13 2.7E-17 147.0 20.6 183 388-624 16-208 (373)
117 1a5t_A Delta prime, HOLB; zinc 99.5 2.7E-13 9.1E-18 147.7 16.4 176 391-624 5-192 (334)
118 1d2n_A N-ethylmaleimide-sensit 99.5 1.2E-13 4.2E-18 146.1 13.3 176 10-212 61-246 (272)
119 2chg_A Replication factor C sm 99.5 3.9E-13 1.3E-17 137.5 16.4 167 12-214 37-210 (226)
120 1sxj_E Activator 1 40 kDa subu 99.5 1.9E-13 6.4E-18 150.8 14.6 197 388-647 14-241 (354)
121 3f9v_A Minichromosome maintena 99.5 2.5E-14 8.5E-19 166.8 7.8 197 379-598 286-490 (595)
122 1sxj_A Activator 1 95 kDa subu 99.5 2.9E-13 1E-17 156.3 16.5 201 388-646 39-255 (516)
123 1njg_A DNA polymerase III subu 99.5 8.9E-13 3.1E-17 136.8 18.1 181 388-624 23-215 (250)
124 1ixz_A ATP-dependent metallopr 99.5 3.2E-13 1.1E-17 141.3 14.7 187 388-639 16-228 (254)
125 1l8q_A Chromosomal replication 99.5 5.1E-13 1.7E-17 145.2 16.2 176 12-214 36-214 (324)
126 1in4_A RUVB, holliday junction 99.5 4.2E-12 1.4E-16 138.2 23.2 159 13-215 51-230 (334)
127 4fcw_A Chaperone protein CLPB; 99.4 4.7E-13 1.6E-17 144.7 14.7 163 11-191 45-257 (311)
128 1fnn_A CDC6P, cell division co 99.4 1.6E-12 5.5E-17 145.3 19.5 201 388-626 17-227 (389)
129 3hws_A ATP-dependent CLP prote 99.4 4.5E-13 1.5E-17 148.0 14.4 169 12-191 50-301 (363)
130 2r44_A Uncharacterized protein 99.4 6.4E-14 2.2E-18 152.9 7.4 177 13-218 46-280 (331)
131 3bos_A Putative DNA replicatio 99.4 5.8E-13 2E-17 138.1 14.4 164 394-624 37-204 (242)
132 2gno_A DNA polymerase III, gam 99.4 5E-13 1.7E-17 142.5 13.8 145 392-598 1-152 (305)
133 2chq_A Replication factor C sm 99.4 1.1E-12 3.7E-17 142.3 16.1 169 12-212 37-208 (319)
134 2v1u_A Cell division control p 99.4 4.3E-13 1.5E-17 149.8 13.2 217 388-647 19-253 (387)
135 1iy2_A ATP-dependent metallopr 99.4 8.4E-13 2.9E-17 140.0 14.7 187 388-639 40-252 (278)
136 1um8_A ATP-dependent CLP prote 99.4 9.6E-13 3.3E-17 146.2 15.7 171 11-192 70-319 (376)
137 3pxg_A Negative regulator of g 99.4 1.3E-12 4.5E-17 148.6 16.8 171 388-624 180-359 (468)
138 2z4s_A Chromosomal replication 99.4 6E-13 2.1E-17 150.0 13.7 182 13-216 130-314 (440)
139 1g41_A Heat shock protein HSLU 99.4 7.7E-13 2.6E-17 146.3 13.9 101 86-192 251-382 (444)
140 1njg_A DNA polymerase III subu 99.4 1.5E-12 5E-17 135.1 15.1 170 14-214 46-234 (250)
141 2z4s_A Chromosomal replication 99.4 3.7E-13 1.3E-17 151.7 11.2 175 420-649 132-312 (440)
142 1sxj_D Activator 1 41 kDa subu 99.4 1.2E-12 4E-17 144.3 14.8 166 14-214 59-241 (353)
143 1nnw_A Hypothetical protein; s 99.4 2.1E-13 7.1E-18 142.6 8.2 118 631-748 5-141 (252)
144 2v1u_A Cell division control p 99.4 2.5E-12 8.6E-17 143.5 16.9 195 11-216 42-257 (387)
145 1in4_A RUVB, holliday junction 99.4 1.2E-11 4.2E-16 134.5 21.2 179 388-625 25-211 (334)
146 1sxj_A Activator 1 95 kDa subu 99.4 3E-13 1E-17 156.2 8.7 168 12-212 76-256 (516)
147 1iqp_A RFCS; clamp loader, ext 99.4 2.2E-12 7.6E-17 140.4 15.0 165 13-213 46-217 (327)
148 1jr3_A DNA polymerase III subu 99.4 2E-11 6.7E-16 135.6 22.8 170 14-214 39-227 (373)
149 1jbk_A CLPB protein; beta barr 99.4 3.9E-13 1.3E-17 134.0 7.7 156 387-594 21-194 (195)
150 3bos_A Putative DNA replicatio 99.4 1.9E-12 6.6E-17 134.1 13.0 171 12-215 51-224 (242)
151 1sxj_B Activator 1 37 kDa subu 99.4 2.9E-12 1E-16 139.2 14.5 164 13-212 42-213 (323)
152 1a5t_A Delta prime, HOLB; zinc 99.3 5.9E-12 2E-16 137.0 14.7 167 12-211 23-208 (334)
153 1sxj_E Activator 1 40 kDa subu 99.3 8.5E-12 2.9E-16 137.4 15.5 174 13-215 36-244 (354)
154 3vkg_A Dynein heavy chain, cyt 99.3 4.4E-10 1.5E-14 148.9 33.8 121 15-164 606-749 (3245)
155 2qby_A CDC6 homolog 1, cell di 99.3 8.3E-12 2.8E-16 139.2 14.4 195 388-625 20-230 (386)
156 1sxj_C Activator 1 40 kDa subu 99.3 1.6E-11 5.6E-16 134.2 16.4 163 14-212 47-216 (340)
157 3pxi_A Negative regulator of g 99.3 5.8E-12 2E-16 152.7 14.0 158 12-191 520-703 (758)
158 2bjv_A PSP operon transcriptio 99.3 5.7E-12 2E-16 132.6 12.2 159 12-190 28-220 (265)
159 1ojl_A Transcriptional regulat 99.3 3.5E-12 1.2E-16 136.5 10.7 161 11-191 23-216 (304)
160 1qvr_A CLPB protein; coiled co 99.3 7.9E-12 2.7E-16 153.2 15.0 179 388-624 170-366 (854)
161 1r6b_X CLPA protein; AAA+, N-t 99.3 1.1E-11 3.9E-16 150.5 16.1 160 11-191 486-694 (758)
162 3rqz_A Metallophosphoesterase; 99.3 1.6E-12 5.3E-17 135.1 7.1 116 631-750 7-122 (246)
163 2qby_B CDC6 homolog 3, cell di 99.3 3.5E-11 1.2E-15 134.1 18.7 190 12-216 44-253 (384)
164 2p65_A Hypothetical protein PF 99.3 2.5E-12 8.5E-17 127.4 8.3 148 387-586 21-187 (187)
165 3qfm_A SAPH, putative uncharac 99.3 7.5E-12 2.6E-16 131.3 12.2 116 630-747 14-138 (270)
166 1g8p_A Magnesium-chelatase 38 99.3 9.1E-12 3.1E-16 137.0 13.2 119 86-218 145-305 (350)
167 3f8t_A Predicted ATPase involv 99.3 1.7E-11 5.8E-16 133.9 14.3 214 379-624 205-425 (506)
168 2qby_A CDC6 homolog 1, cell di 99.3 3.2E-11 1.1E-15 134.4 16.8 191 11-216 43-253 (386)
169 1fnn_A CDC6P, cell division co 99.3 8.3E-11 2.8E-15 131.3 17.8 184 15-216 46-255 (389)
170 2c9o_A RUVB-like 1; hexameric 99.2 7.4E-12 2.5E-16 142.3 6.0 99 387-504 36-140 (456)
171 3nbx_X ATPase RAVA; AAA+ ATPas 99.2 1.3E-10 4.4E-15 131.7 15.5 185 13-218 41-269 (500)
172 2gno_A DNA polymerase III, gam 99.2 1.4E-10 4.9E-15 123.4 14.2 130 13-168 18-152 (305)
173 3n70_A Transport activator; si 99.2 6.1E-11 2.1E-15 112.1 8.6 116 11-154 22-141 (145)
174 3co5_A Putative two-component 99.1 2.5E-11 8.5E-16 114.5 1.1 111 11-154 25-141 (143)
175 3cmw_A Protein RECA, recombina 99.0 7.6E-10 2.6E-14 139.9 12.1 85 420-505 1084-1175(1706)
176 3k1j_A LON protease, ATP-depen 99.0 8.4E-10 2.9E-14 129.8 11.3 121 86-217 202-357 (604)
177 3ec2_A DNA replication protein 98.9 9.9E-10 3.4E-14 108.0 7.8 125 393-544 19-146 (180)
178 1w5s_A Origin recognition comp 98.9 3.3E-09 1.1E-13 119.2 13.2 202 388-626 22-249 (412)
179 3cmu_A Protein RECA, recombina 98.9 3.3E-09 1.1E-13 135.5 13.5 84 420-504 1429-1519(2050)
180 3f9v_A Minichromosome maintena 98.9 3.2E-10 1.1E-14 132.1 3.5 184 11-214 325-536 (595)
181 1w5s_A Origin recognition comp 98.9 1.3E-08 4.4E-13 114.4 14.9 196 12-214 49-272 (412)
182 2kjq_A DNAA-related protein; s 98.9 1.8E-09 6.3E-14 102.1 6.3 92 420-545 38-129 (149)
183 1su1_A Hypothetical protein YF 98.8 6.9E-09 2.4E-13 104.2 9.9 70 630-700 28-105 (208)
184 2w58_A DNAI, primosome compone 98.8 6.5E-09 2.2E-13 104.2 6.7 108 420-548 56-166 (202)
185 3dzd_A Transcriptional regulat 98.7 1E-07 3.6E-12 104.4 14.0 159 12-191 151-342 (368)
186 2kkn_A Uncharacterized protein 98.7 3E-08 1E-12 96.7 7.6 61 629-696 24-86 (178)
187 2qgz_A Helicase loader, putati 98.7 1.5E-08 5.2E-13 108.2 6.0 109 419-548 153-265 (308)
188 1jr3_D DNA polymerase III, del 98.7 2.2E-07 7.4E-12 101.5 15.2 163 420-647 20-189 (343)
189 1ny5_A Transcriptional regulat 98.6 1.1E-07 3.6E-12 105.3 12.4 160 11-190 158-350 (387)
190 2kjq_A DNAA-related protein; s 98.6 7.3E-08 2.5E-12 91.0 7.7 106 12-149 35-141 (149)
191 1s3l_A Hypothetical protein MJ 98.6 1.6E-07 5.6E-12 92.6 9.8 64 630-699 28-91 (190)
192 2qen_A Walker-type ATPase; unk 98.5 6.7E-07 2.3E-11 97.7 15.3 163 14-194 32-238 (350)
193 1tue_A Replication protein E1; 98.5 2.3E-07 8E-12 90.3 9.9 136 392-584 40-178 (212)
194 1u0j_A DNA replication protein 98.5 5.2E-07 1.8E-11 92.3 12.6 133 419-595 105-248 (267)
195 2qen_A Walker-type ATPase; unk 98.5 8.8E-07 3E-11 96.7 15.0 183 388-624 12-233 (350)
196 3f8t_A Predicted ATPase involv 98.5 2.5E-07 8.6E-12 101.3 10.1 156 11-191 237-427 (506)
197 1uf3_A Hypothetical protein TT 98.5 4.3E-07 1.5E-11 92.6 10.3 67 631-698 9-78 (228)
198 2w58_A DNAI, primosome compone 98.4 2.4E-07 8.2E-12 92.7 7.2 71 14-98 55-128 (202)
199 2r2a_A Uncharacterized protein 98.4 3.2E-07 1.1E-11 90.8 8.0 130 15-156 7-154 (199)
200 2fna_A Conserved hypothetical 98.4 1E-06 3.6E-11 96.4 12.7 161 14-194 31-242 (357)
201 1jr3_D DNA polymerase III, del 98.4 9.6E-07 3.3E-11 96.3 11.3 169 11-214 16-191 (343)
202 1tue_A Replication protein E1; 98.4 1.7E-07 5.9E-12 91.2 4.7 108 13-156 58-180 (212)
203 2fna_A Conserved hypothetical 98.3 2.1E-06 7.3E-11 93.9 13.0 167 388-598 13-222 (357)
204 2a22_A Vacuolar protein sortin 98.3 3.1E-07 1.1E-11 92.7 5.6 89 631-748 29-123 (215)
205 3ec2_A DNA replication protein 98.3 1.5E-07 5.1E-12 92.3 2.9 74 13-97 38-112 (180)
206 2yvt_A Hypothetical protein AQ 98.3 5.8E-07 2E-11 93.8 6.1 68 631-699 9-105 (260)
207 2qgz_A Helicase loader, putati 98.3 4.3E-07 1.5E-11 96.9 4.9 72 13-98 152-227 (308)
208 3ck2_A Conserved uncharacteriz 98.3 1.9E-06 6.5E-11 83.9 8.8 57 630-697 9-65 (176)
209 1ye8_A Protein THEP1, hypothet 98.2 4E-06 1.4E-10 81.6 9.4 23 15-37 2-24 (178)
210 2vhj_A Ntpase P4, P4; non- hyd 98.2 1.4E-06 4.8E-11 91.3 5.7 104 15-131 125-236 (331)
211 1z2w_A Vacuolar protein sortin 98.2 2.8E-06 9.6E-11 84.0 7.5 62 631-697 14-77 (192)
212 2orw_A Thymidine kinase; TMTK, 98.1 7.2E-06 2.4E-10 80.2 9.1 96 420-516 5-102 (184)
213 1ye8_A Protein THEP1, hypothet 98.1 1.3E-05 4.4E-10 77.9 10.9 23 420-442 2-24 (178)
214 2r2a_A Uncharacterized protein 98.1 9.6E-06 3.3E-10 80.1 9.5 130 420-585 7-153 (199)
215 1u0j_A DNA replication protein 98.1 1.1E-05 3.7E-10 82.6 9.7 119 12-167 103-250 (267)
216 1xm7_A Hypothetical protein AQ 98.0 2.3E-05 8E-10 77.5 10.5 55 644-698 31-86 (195)
217 2r8r_A Sensor protein; KDPD, P 97.8 9E-05 3.1E-09 73.6 11.6 153 418-593 6-172 (228)
218 3cmw_A Protein RECA, recombina 97.8 2E-05 6.7E-10 100.2 8.4 79 14-100 1083-1175(1706)
219 2vhj_A Ntpase P4, P4; non- hyd 97.8 3.7E-05 1.3E-09 80.6 8.9 70 420-504 125-196 (331)
220 2b8t_A Thymidine kinase; deoxy 97.8 7.7E-05 2.6E-09 74.8 9.5 96 420-515 14-114 (223)
221 2orw_A Thymidine kinase; TMTK, 97.6 2.3E-05 7.9E-10 76.6 2.7 117 15-149 5-132 (184)
222 3upu_A ATP-dependent DNA helic 97.5 0.00018 6.1E-09 81.4 9.6 113 392-516 29-154 (459)
223 3cmu_A Protein RECA, recombina 97.4 0.00044 1.5E-08 89.0 11.7 80 12-99 1426-1519(2050)
224 1g5t_A COB(I)alamin adenosyltr 97.4 0.00038 1.3E-08 67.6 8.2 115 420-547 30-169 (196)
225 3jvv_A Twitching mobility prot 97.3 0.00035 1.2E-08 75.5 8.4 92 419-516 124-220 (356)
226 3dm5_A SRP54, signal recogniti 97.3 0.0063 2.2E-07 67.1 17.8 140 394-543 73-227 (443)
227 2cvh_A DNA repair and recombin 97.3 0.00044 1.5E-08 69.6 7.7 23 13-35 20-42 (220)
228 2w0m_A SSO2452; RECA, SSPF, un 97.2 0.00021 7.3E-09 72.6 5.1 27 12-38 22-48 (235)
229 1xx6_A Thymidine kinase; NESG, 97.2 0.00045 1.6E-08 67.5 7.1 94 420-515 10-106 (191)
230 2i3b_A HCR-ntpase, human cance 97.2 0.00027 9.2E-09 69.2 5.3 24 420-443 3-26 (189)
231 3kl4_A SRP54, signal recogniti 97.2 0.0025 8.5E-08 70.4 13.4 115 418-543 97-226 (433)
232 2w0m_A SSO2452; RECA, SSPF, un 97.2 0.00058 2E-08 69.3 7.6 36 420-455 25-60 (235)
233 2j9r_A Thymidine kinase; TK1, 97.2 0.00071 2.4E-08 66.7 7.8 94 420-515 30-126 (214)
234 3hr8_A Protein RECA; alpha and 97.1 0.0013 4.4E-08 70.8 10.2 84 420-504 63-153 (356)
235 2b8t_A Thymidine kinase; deoxy 97.1 0.00065 2.2E-08 68.0 7.2 103 14-132 13-127 (223)
236 2r8r_A Sensor protein; KDPD, P 97.1 0.0051 1.7E-07 61.0 13.3 39 11-56 4-42 (228)
237 2a5y_B CED-4; apoptosis; HET: 97.1 0.0059 2E-07 70.6 16.0 44 391-440 131-174 (549)
238 3vaa_A Shikimate kinase, SK; s 97.1 0.00025 8.6E-09 70.2 3.7 25 13-37 25-49 (199)
239 2zr9_A Protein RECA, recombina 97.1 0.0012 4.2E-08 71.2 9.1 83 420-503 63-152 (349)
240 3e1s_A Exodeoxyribonuclease V, 97.0 0.00078 2.7E-08 77.9 7.8 90 420-516 206-305 (574)
241 3trf_A Shikimate kinase, SK; a 97.0 0.00029 9.8E-09 68.8 3.5 32 13-54 5-36 (185)
242 1xp8_A RECA protein, recombina 97.0 0.0018 6.1E-08 70.2 10.1 79 13-99 74-166 (366)
243 1qhx_A CPT, protein (chloramph 97.0 0.00053 1.8E-08 66.4 5.0 34 14-57 4-37 (178)
244 2eyu_A Twitching motility prot 97.0 0.0017 5.8E-08 67.1 9.0 91 419-515 26-121 (261)
245 1z6t_A APAF-1, apoptotic prote 97.0 0.0047 1.6E-07 72.3 13.7 46 388-440 124-169 (591)
246 1n0w_A DNA repair protein RAD5 96.9 0.002 6.9E-08 65.7 9.1 25 13-37 24-48 (243)
247 2cvh_A DNA repair and recombin 96.9 0.001 3.5E-08 66.7 6.7 34 420-456 22-55 (220)
248 4a74_A DNA repair and recombin 96.9 0.0012 4.2E-08 66.8 7.1 24 14-37 26-49 (231)
249 3iij_A Coilin-interacting nucl 96.9 0.00061 2.1E-08 66.2 4.6 27 11-37 9-35 (180)
250 2i3b_A HCR-ntpase, human cance 96.9 0.00098 3.3E-08 65.1 5.9 24 15-38 3-26 (189)
251 2zr9_A Protein RECA, recombina 96.9 0.0015 5.2E-08 70.4 7.9 79 13-99 61-153 (349)
252 1gvn_B Zeta; postsegregational 96.8 0.0016 5.5E-08 68.3 7.4 34 420-456 35-68 (287)
253 1u94_A RECA protein, recombina 96.8 0.0012 4.1E-08 71.3 6.6 81 12-99 62-155 (356)
254 3ib7_A ICC protein; metallopho 96.8 0.0043 1.5E-07 66.6 11.1 66 631-696 29-113 (330)
255 1n0w_A DNA repair protein RAD5 96.8 0.0019 6.5E-08 65.9 7.6 37 420-456 26-68 (243)
256 2dr3_A UPF0273 protein PH0284; 96.8 0.0025 8.4E-08 65.2 8.5 37 420-456 25-61 (247)
257 1qhx_A CPT, protein (chloramph 96.8 0.00066 2.3E-08 65.7 3.8 34 420-456 5-38 (178)
258 2iut_A DNA translocase FTSK; n 96.8 0.0077 2.6E-07 68.3 12.9 143 13-165 214-420 (574)
259 2pt7_A CAG-ALFA; ATPase, prote 96.8 0.0053 1.8E-07 65.7 11.1 91 420-516 173-263 (330)
260 1via_A Shikimate kinase; struc 96.8 0.00071 2.4E-08 65.4 3.9 23 15-37 6-28 (175)
261 1zuh_A Shikimate kinase; alpha 96.8 0.00062 2.1E-08 65.3 3.4 31 14-54 8-38 (168)
262 4a74_A DNA repair and recombin 96.8 0.0018 6.1E-08 65.5 7.0 37 420-456 27-69 (231)
263 1xp8_A RECA protein, recombina 96.8 0.0028 9.5E-08 68.7 8.9 83 420-503 76-165 (366)
264 3trf_A Shikimate kinase, SK; a 96.8 0.0008 2.7E-08 65.6 4.2 30 420-452 7-36 (185)
265 2dr3_A UPF0273 protein PH0284; 96.8 0.0042 1.4E-07 63.4 9.9 27 12-38 22-48 (247)
266 1u94_A RECA protein, recombina 96.8 0.0023 7.9E-08 69.1 8.1 83 420-503 65-154 (356)
267 3kb2_A SPBC2 prophage-derived 96.8 0.00082 2.8E-08 64.6 4.1 31 15-55 3-33 (173)
268 3hr8_A Protein RECA; alpha and 96.8 0.0032 1.1E-07 67.7 9.1 78 14-99 62-153 (356)
269 3crm_A TRNA delta(2)-isopenten 96.7 0.00074 2.5E-08 71.3 3.9 100 14-131 6-105 (323)
270 1y63_A LMAJ004144AAA protein; 96.7 0.00073 2.5E-08 65.9 3.5 25 13-37 10-35 (184)
271 2iyv_A Shikimate kinase, SK; t 96.7 0.00084 2.9E-08 65.4 3.9 31 14-54 3-33 (184)
272 3jvv_A Twitching mobility prot 96.7 0.002 7E-08 69.5 7.2 102 12-131 122-231 (356)
273 3io5_A Recombination and repai 96.7 0.003 1E-07 65.8 8.1 83 420-503 30-124 (333)
274 3upu_A ATP-dependent DNA helic 96.7 0.0028 9.5E-08 71.6 8.6 27 14-40 46-72 (459)
275 2p5t_B PEZT; postsegregational 96.7 0.0025 8.5E-08 65.6 7.5 35 420-457 34-68 (253)
276 1cr0_A DNA primase/helicase; R 96.7 0.0044 1.5E-07 65.5 9.5 28 12-39 34-61 (296)
277 1z6t_A APAF-1, apoptotic prote 96.7 0.0057 1.9E-07 71.6 11.4 23 14-36 148-170 (591)
278 1w4r_A Thymidine kinase; type 96.7 0.0078 2.7E-07 58.2 10.2 90 420-515 22-115 (195)
279 2ehv_A Hypothetical protein PH 96.7 0.00094 3.2E-08 68.6 4.1 35 420-454 32-67 (251)
280 2cdn_A Adenylate kinase; phosp 96.7 0.00098 3.4E-08 66.0 4.0 27 11-37 18-44 (201)
281 1kag_A SKI, shikimate kinase I 96.7 0.0013 4.5E-08 63.2 4.8 24 14-37 5-28 (173)
282 2px0_A Flagellar biosynthesis 96.7 0.017 5.9E-07 60.6 13.8 94 420-515 107-209 (296)
283 2cdn_A Adenylate kinase; phosp 96.6 0.0014 4.6E-08 65.0 4.9 30 420-452 22-51 (201)
284 1zu4_A FTSY; GTPase, signal re 96.6 0.015 5.3E-07 61.7 13.3 41 417-457 104-144 (320)
285 3vaa_A Shikimate kinase, SK; s 96.6 0.0012 4.1E-08 65.3 4.3 30 420-452 27-56 (199)
286 3t61_A Gluconokinase; PSI-biol 96.6 0.0013 4.3E-08 65.2 4.5 25 13-37 18-42 (202)
287 3kb2_A SPBC2 prophage-derived 96.6 0.0014 4.9E-08 62.8 4.7 30 420-452 3-32 (173)
288 2ehv_A Hypothetical protein PH 96.6 0.0012 3.9E-08 67.9 4.1 24 12-35 29-52 (251)
289 2orv_A Thymidine kinase; TP4A 96.6 0.0098 3.4E-07 59.0 10.5 91 420-516 21-114 (234)
290 1w4r_A Thymidine kinase; type 96.6 0.0019 6.7E-08 62.5 5.3 24 16-39 23-47 (195)
291 1nlf_A Regulatory protein REPA 96.6 0.0042 1.4E-07 65.0 8.4 24 420-443 32-55 (279)
292 2fz4_A DNA repair protein RAD2 96.6 0.006 2E-07 62.0 9.3 24 14-37 109-132 (237)
293 2ze6_A Isopentenyl transferase 96.6 0.0013 4.5E-08 67.7 4.3 32 15-56 3-34 (253)
294 1zuh_A Shikimate kinase; alpha 96.5 0.0014 4.9E-08 62.7 4.1 30 420-452 9-38 (168)
295 3e70_C DPA, signal recognition 96.5 0.027 9.1E-07 60.0 14.4 34 419-452 130-163 (328)
296 1via_A Shikimate kinase; struc 96.5 0.0012 4.2E-08 63.7 3.5 29 420-451 6-34 (175)
297 2rhm_A Putative kinase; P-loop 96.5 0.0011 3.6E-08 65.1 3.1 25 13-37 5-29 (193)
298 3e1s_A Exodeoxyribonuclease V, 96.5 0.0057 2E-07 70.6 9.5 28 13-40 204-231 (574)
299 1y63_A LMAJ004144AAA protein; 96.5 0.0016 5.6E-08 63.4 4.0 22 420-441 12-33 (184)
300 1aky_A Adenylate kinase; ATP:A 96.5 0.0015 5.1E-08 65.7 3.8 25 13-37 4-28 (220)
301 1e6c_A Shikimate kinase; phosp 96.5 0.0016 5.5E-08 62.5 3.9 23 15-37 4-26 (173)
302 2c95_A Adenylate kinase 1; tra 96.5 0.0015 5.2E-08 64.2 3.8 26 12-37 8-33 (196)
303 1knq_A Gluconate kinase; ALFA/ 96.4 0.0028 9.5E-08 61.1 5.4 24 419-442 9-32 (175)
304 3umf_A Adenylate kinase; rossm 96.4 0.0018 6.2E-08 64.5 4.1 27 11-37 27-53 (217)
305 2fz4_A DNA repair protein RAD2 96.4 0.0077 2.6E-07 61.2 8.9 92 420-515 110-217 (237)
306 1knq_A Gluconate kinase; ALFA/ 96.4 0.0018 6.1E-08 62.4 3.8 25 13-37 8-32 (175)
307 2iyv_A Shikimate kinase, SK; t 96.4 0.0018 6.3E-08 62.9 3.9 29 420-451 4-32 (184)
308 3iij_A Coilin-interacting nucl 96.4 0.0017 5.8E-08 62.9 3.6 29 420-451 13-41 (180)
309 2p5t_B PEZT; postsegregational 96.4 0.0043 1.5E-07 63.8 6.8 27 11-37 30-56 (253)
310 2ze6_A Isopentenyl transferase 96.4 0.0023 7.9E-08 65.8 4.7 32 420-454 3-34 (253)
311 1kag_A SKI, shikimate kinase I 96.3 0.0019 6.4E-08 62.1 3.7 23 420-442 6-28 (173)
312 3lxw_A GTPase IMAP family memb 96.3 0.01 3.5E-07 60.7 9.4 24 13-36 21-44 (247)
313 3dl0_A Adenylate kinase; phosp 96.3 0.0014 4.9E-08 65.6 2.8 23 15-37 2-24 (216)
314 3fb4_A Adenylate kinase; psych 96.3 0.0017 5.7E-08 65.1 3.3 23 15-37 2-24 (216)
315 2ewv_A Twitching motility prot 96.3 0.0057 1.9E-07 66.7 7.7 86 419-515 137-232 (372)
316 3lw7_A Adenylate kinase relate 96.3 0.0017 5.7E-08 62.5 3.2 22 15-37 3-24 (179)
317 3cm0_A Adenylate kinase; ATP-b 96.3 0.002 6.7E-08 62.8 3.6 24 14-37 5-28 (186)
318 2pt5_A Shikimate kinase, SK; a 96.3 0.0018 6.2E-08 61.9 3.3 23 15-37 2-24 (168)
319 3lda_A DNA repair protein RAD5 96.3 0.0088 3E-07 65.5 9.1 25 13-37 178-202 (400)
320 2ius_A DNA translocase FTSK; n 96.3 0.013 4.4E-07 66.0 10.6 73 87-166 299-375 (512)
321 3a8t_A Adenylate isopentenyltr 96.3 0.012 4.2E-07 62.2 9.8 33 420-455 42-74 (339)
322 1pzn_A RAD51, DNA repair and r 96.3 0.0083 2.8E-07 64.8 8.8 25 13-37 131-155 (349)
323 1nks_A Adenylate kinase; therm 96.3 0.0036 1.2E-07 61.2 5.4 24 15-38 3-26 (194)
324 1w36_D RECD, exodeoxyribonucle 96.3 0.0089 3E-07 69.8 9.5 24 420-443 166-189 (608)
325 2z43_A DNA repair and recombin 96.3 0.0035 1.2E-07 67.2 5.6 26 12-37 106-131 (324)
326 1nks_A Adenylate kinase; therm 96.3 0.0023 7.9E-08 62.6 3.9 37 420-456 3-39 (194)
327 2rhm_A Putative kinase; P-loop 96.3 0.0024 8.2E-08 62.6 4.0 29 420-451 7-35 (193)
328 1nlf_A Regulatory protein REPA 96.3 0.016 5.3E-07 60.6 10.4 29 12-40 29-57 (279)
329 4eun_A Thermoresistant glucoki 96.3 0.0032 1.1E-07 62.2 4.8 26 12-37 28-53 (200)
330 1pzn_A RAD51, DNA repair and r 96.3 0.0089 3.1E-07 64.5 8.7 37 420-456 133-175 (349)
331 1ak2_A Adenylate kinase isoenz 96.3 0.0023 8E-08 64.9 3.9 25 13-37 16-40 (233)
332 1g5t_A COB(I)alamin adenosyltr 96.2 0.021 7E-07 55.4 10.3 29 12-40 27-55 (196)
333 1tev_A UMP-CMP kinase; ploop, 96.2 0.0022 7.7E-08 62.8 3.7 24 14-37 4-27 (196)
334 2eyu_A Twitching motility prot 96.2 0.0061 2.1E-07 62.8 7.1 28 11-38 23-50 (261)
335 1zp6_A Hypothetical protein AT 96.2 0.0018 6.1E-08 63.4 2.8 25 13-37 9-33 (191)
336 1qf9_A UMP/CMP kinase, protein 96.2 0.0022 7.5E-08 62.8 3.4 24 14-37 7-30 (194)
337 3be4_A Adenylate kinase; malar 96.2 0.0021 7E-08 64.5 3.2 24 14-37 6-29 (217)
338 1aky_A Adenylate kinase; ATP:A 96.2 0.0028 9.5E-08 63.7 4.2 29 420-451 6-34 (220)
339 1e6c_A Shikimate kinase; phosp 96.2 0.0025 8.7E-08 61.1 3.8 29 420-451 4-32 (173)
340 3sr0_A Adenylate kinase; phosp 96.2 0.003 1E-07 62.5 4.3 23 15-37 2-24 (206)
341 1ex7_A Guanylate kinase; subst 96.2 0.013 4.4E-07 56.8 8.6 23 420-442 3-25 (186)
342 2bwj_A Adenylate kinase 5; pho 96.2 0.0023 7.9E-08 63.0 3.5 24 14-37 13-36 (199)
343 1kht_A Adenylate kinase; phosp 96.2 0.0027 9.2E-08 62.1 3.9 25 14-38 4-28 (192)
344 4gp7_A Metallophosphoesterase; 96.2 0.0012 3.9E-08 63.6 1.2 109 421-539 12-157 (171)
345 2yvu_A Probable adenylyl-sulfa 96.2 0.0044 1.5E-07 60.3 5.4 40 12-58 12-51 (186)
346 3t61_A Gluconokinase; PSI-biol 96.2 0.003 1E-07 62.4 4.3 29 420-451 20-48 (202)
347 1zp6_A Hypothetical protein AT 96.2 0.0026 8.9E-08 62.2 3.8 35 420-457 11-45 (191)
348 2vli_A Antibiotic resistance p 96.2 0.0023 7.8E-08 62.1 3.3 28 420-450 7-34 (183)
349 1ukz_A Uridylate kinase; trans 96.2 0.0024 8.1E-08 63.2 3.4 24 14-37 16-39 (203)
350 3dm5_A SRP54, signal recogniti 96.2 0.018 6.3E-07 63.4 10.7 78 13-98 100-195 (443)
351 2pt5_A Shikimate kinase, SK; a 96.2 0.0031 1.1E-07 60.2 4.1 29 420-451 2-30 (168)
352 1zd8_A GTP:AMP phosphotransfer 96.2 0.0022 7.4E-08 64.9 3.1 24 14-37 8-31 (227)
353 1v5w_A DMC1, meiotic recombina 96.2 0.011 3.8E-07 63.6 8.9 25 13-37 122-146 (343)
354 2onk_A Molybdate/tungstate ABC 96.2 0.0063 2.2E-07 61.8 6.5 24 420-443 26-49 (240)
355 1zak_A Adenylate kinase; ATP:A 96.1 0.0022 7.4E-08 64.6 3.0 25 13-37 5-29 (222)
356 3exa_A TRNA delta(2)-isopenten 96.1 0.0082 2.8E-07 62.6 7.3 98 15-130 5-102 (322)
357 3nh6_A ATP-binding cassette SU 96.1 0.012 4E-07 62.0 8.6 23 420-442 82-104 (306)
358 3lw7_A Adenylate kinase relate 96.1 0.0029 9.9E-08 60.7 3.7 28 420-451 3-30 (179)
359 3tlx_A Adenylate kinase 2; str 96.1 0.0026 8.7E-08 65.1 3.5 26 12-37 28-53 (243)
360 2vli_A Antibiotic resistance p 96.1 0.0022 7.4E-08 62.3 2.7 25 13-37 5-29 (183)
361 2ff7_A Alpha-hemolysin translo 96.1 0.012 4.1E-07 60.1 8.4 122 420-582 37-216 (247)
362 3foz_A TRNA delta(2)-isopenten 96.1 0.0086 2.9E-07 62.4 7.3 98 15-130 12-109 (316)
363 3cm0_A Adenylate kinase; ATP-b 96.1 0.0027 9.2E-08 61.8 3.4 23 420-442 6-28 (186)
364 3lda_A DNA repair protein RAD5 96.1 0.0078 2.7E-07 66.0 7.3 37 420-456 180-222 (400)
365 3dl0_A Adenylate kinase; phosp 96.1 0.0032 1.1E-07 63.0 3.9 30 420-452 2-31 (216)
366 1ukz_A Uridylate kinase; trans 96.1 0.0037 1.3E-07 61.8 4.3 29 420-451 17-45 (203)
367 1gvn_B Zeta; postsegregational 96.1 0.003 1E-07 66.3 3.8 26 12-37 32-57 (287)
368 1ak2_A Adenylate kinase isoenz 96.1 0.0038 1.3E-07 63.3 4.5 29 420-451 18-46 (233)
369 2c95_A Adenylate kinase 1; tra 96.1 0.0032 1.1E-07 61.8 3.8 29 420-451 11-39 (196)
370 3fb4_A Adenylate kinase; psych 96.1 0.0035 1.2E-07 62.7 4.2 29 420-451 2-30 (216)
371 2r6a_A DNAB helicase, replicat 96.1 0.01 3.4E-07 66.8 8.3 28 12-39 202-229 (454)
372 1e4v_A Adenylate kinase; trans 96.1 0.0026 8.8E-08 63.7 3.1 23 15-37 2-24 (214)
373 2iut_A DNA translocase FTSK; n 96.1 0.064 2.2E-06 60.8 14.7 72 491-594 344-419 (574)
374 2yhs_A FTSY, cell division pro 96.1 0.02 6.9E-07 63.7 10.5 36 419-454 294-329 (503)
375 3gfo_A Cobalt import ATP-bindi 96.1 0.0082 2.8E-07 62.3 6.9 24 420-443 36-59 (275)
376 1xx6_A Thymidine kinase; NESG, 96.1 0.0057 2E-07 59.6 5.4 26 15-40 10-35 (191)
377 1tev_A UMP-CMP kinase; ploop, 96.0 0.0036 1.2E-07 61.3 4.0 28 420-450 5-32 (196)
378 3uie_A Adenylyl-sulfate kinase 96.0 0.0043 1.5E-07 61.2 4.5 37 420-456 27-63 (200)
379 2pze_A Cystic fibrosis transme 96.0 0.018 6.2E-07 58.0 9.1 123 420-582 36-202 (229)
380 2pt7_A CAG-ALFA; ATPase, prote 96.0 0.0073 2.5E-07 64.6 6.5 25 13-37 171-195 (330)
381 2qor_A Guanylate kinase; phosp 96.0 0.0037 1.3E-07 62.0 3.9 25 13-37 12-36 (204)
382 3nwj_A ATSK2; P loop, shikimat 96.0 0.0039 1.3E-07 63.7 4.1 25 13-37 48-72 (250)
383 3a8t_A Adenylate isopentenyltr 96.0 0.0022 7.7E-08 67.8 2.4 36 14-59 41-76 (339)
384 1kht_A Adenylate kinase; phosp 96.0 0.003 1E-07 61.7 3.2 23 420-442 5-27 (192)
385 3rlf_A Maltose/maltodextrin im 96.0 0.0068 2.3E-07 65.6 6.2 24 420-443 31-54 (381)
386 3sr0_A Adenylate kinase; phosp 96.0 0.0047 1.6E-07 61.1 4.5 34 420-458 2-35 (206)
387 3tlx_A Adenylate kinase 2; str 96.0 0.01 3.5E-07 60.5 7.1 29 420-451 31-59 (243)
388 1ly1_A Polynucleotide kinase; 96.0 0.0033 1.1E-07 60.7 3.2 21 15-35 4-24 (181)
389 3uie_A Adenylyl-sulfate kinase 95.9 0.0034 1.2E-07 62.0 3.3 27 12-38 24-50 (200)
390 2bwj_A Adenylate kinase 5; pho 95.9 0.004 1.4E-07 61.2 3.8 23 420-442 14-36 (199)
391 3bh0_A DNAB-like replicative h 95.9 0.032 1.1E-06 59.3 11.1 27 13-39 68-94 (315)
392 3be4_A Adenylate kinase; malar 95.9 0.0041 1.4E-07 62.3 3.8 29 420-451 7-35 (217)
393 3fvq_A Fe(3+) IONS import ATP- 95.9 0.0093 3.2E-07 64.0 6.8 24 420-443 32-55 (359)
394 2yvu_A Probable adenylyl-sulfa 95.9 0.0074 2.5E-07 58.7 5.6 35 420-454 15-49 (186)
395 1qf9_A UMP/CMP kinase, protein 95.9 0.0044 1.5E-07 60.5 3.8 29 420-451 8-36 (194)
396 3io5_A Recombination and repai 95.9 0.02 6.9E-07 59.7 8.8 80 15-99 30-125 (333)
397 1zd8_A GTP:AMP phosphotransfer 95.9 0.0041 1.4E-07 62.8 3.6 29 420-451 9-37 (227)
398 1v43_A Sugar-binding transport 95.9 0.012 4.1E-07 63.7 7.4 23 420-442 39-61 (372)
399 3nwj_A ATSK2; P loop, shikimat 95.9 0.0046 1.6E-07 63.2 3.9 29 420-451 50-78 (250)
400 1ly1_A Polynucleotide kinase; 95.9 0.0031 1.1E-07 60.9 2.5 21 420-440 4-24 (181)
401 2jaq_A Deoxyguanosine kinase; 95.9 0.0055 1.9E-07 60.5 4.4 23 15-37 2-24 (205)
402 1z47_A CYSA, putative ABC-tran 95.9 0.01 3.5E-07 63.7 6.7 24 420-443 43-66 (355)
403 3umf_A Adenylate kinase; rossm 95.9 0.0061 2.1E-07 60.7 4.6 34 420-458 31-64 (217)
404 1rz3_A Hypothetical protein rb 95.9 0.014 4.8E-07 57.5 7.3 37 420-456 24-60 (201)
405 1cke_A CK, MSSA, protein (cyti 95.9 0.0064 2.2E-07 61.3 4.9 24 14-37 6-29 (227)
406 1e4v_A Adenylate kinase; trans 95.8 0.0049 1.7E-07 61.6 4.0 29 420-451 2-30 (214)
407 2pez_A Bifunctional 3'-phospho 95.8 0.0071 2.4E-07 58.4 5.0 36 420-455 7-42 (179)
408 4eun_A Thermoresistant glucoki 95.8 0.0061 2.1E-07 60.1 4.6 23 420-442 31-53 (200)
409 1v5w_A DMC1, meiotic recombina 95.8 0.017 5.7E-07 62.3 8.4 37 420-456 124-166 (343)
410 2xb4_A Adenylate kinase; ATP-b 95.8 0.0062 2.1E-07 61.3 4.6 23 15-37 2-24 (223)
411 1q3t_A Cytidylate kinase; nucl 95.8 0.0068 2.3E-07 61.6 4.9 31 7-37 10-40 (236)
412 1vpl_A ABC transporter, ATP-bi 95.8 0.0054 1.9E-07 62.9 4.1 23 420-442 43-65 (256)
413 2ewv_A Twitching motility prot 95.8 0.0046 1.6E-07 67.4 3.8 28 11-38 134-161 (372)
414 2pbr_A DTMP kinase, thymidylat 95.8 0.0077 2.6E-07 58.9 5.0 25 15-39 2-26 (195)
415 2it1_A 362AA long hypothetical 95.8 0.011 3.9E-07 63.6 6.7 24 420-443 31-54 (362)
416 3a4m_A L-seryl-tRNA(SEC) kinas 95.8 0.0059 2E-07 63.1 4.3 36 420-455 6-41 (260)
417 3crm_A TRNA delta(2)-isopenten 95.8 0.0057 2E-07 64.5 4.2 32 420-454 7-38 (323)
418 3e2i_A Thymidine kinase; Zn-bi 95.7 0.0096 3.3E-07 58.4 5.4 95 420-516 30-127 (219)
419 2xxa_A Signal recognition part 95.7 0.053 1.8E-06 60.0 12.1 41 418-458 100-141 (433)
420 2ga8_A Hypothetical 39.9 kDa p 95.7 0.014 4.6E-07 62.2 7.0 29 419-450 25-53 (359)
421 2a5y_B CED-4; apoptosis; HET: 95.7 0.038 1.3E-06 63.8 11.5 131 14-168 153-306 (549)
422 2yyz_A Sugar ABC transporter, 95.7 0.012 4.2E-07 63.3 6.8 24 420-443 31-54 (359)
423 2q6t_A DNAB replication FORK h 95.7 0.013 4.4E-07 65.7 7.3 27 13-39 200-226 (444)
424 2if2_A Dephospho-COA kinase; a 95.7 0.0044 1.5E-07 61.3 3.1 22 15-37 3-24 (204)
425 2pez_A Bifunctional 3'-phospho 95.7 0.0076 2.6E-07 58.2 4.7 38 13-57 5-42 (179)
426 2grj_A Dephospho-COA kinase; T 95.7 0.0055 1.9E-07 59.9 3.6 23 15-37 14-36 (192)
427 2wwf_A Thymidilate kinase, put 95.7 0.0063 2.2E-07 60.5 4.2 28 12-39 9-36 (212)
428 1zak_A Adenylate kinase; ATP:A 95.7 0.0039 1.3E-07 62.7 2.6 23 420-442 7-29 (222)
429 3a4m_A L-seryl-tRNA(SEC) kinas 95.7 0.0075 2.6E-07 62.3 4.8 25 14-38 5-29 (260)
430 3r20_A Cytidylate kinase; stru 95.7 0.008 2.7E-07 60.5 4.6 25 13-37 9-33 (233)
431 3d03_A Phosphohydrolase; glyce 95.7 0.0063 2.2E-07 63.2 4.1 56 641-696 26-84 (274)
432 3kl4_A SRP54, signal recogniti 95.6 0.036 1.2E-06 61.1 10.1 28 13-40 97-124 (433)
433 2pbr_A DTMP kinase, thymidylat 95.6 0.0082 2.8E-07 58.7 4.6 34 420-453 2-35 (195)
434 2plr_A DTMP kinase, probable t 95.6 0.0059 2E-07 60.7 3.5 24 14-37 5-28 (213)
435 3gd7_A Fusion complex of cysti 95.6 0.019 6.4E-07 62.6 7.7 23 420-442 49-71 (390)
436 2xb4_A Adenylate kinase; ATP-b 95.6 0.0068 2.3E-07 61.0 4.0 23 420-442 2-24 (223)
437 1vma_A Cell division protein F 95.6 0.064 2.2E-06 56.4 11.5 38 419-456 105-142 (306)
438 2jaq_A Deoxyguanosine kinase; 95.6 0.0078 2.7E-07 59.4 4.2 23 420-442 2-24 (205)
439 1kgd_A CASK, peripheral plasma 95.6 0.006 2.1E-07 59.0 3.3 25 13-37 5-29 (180)
440 1ex7_A Guanylate kinase; subst 95.6 0.0072 2.5E-07 58.6 3.8 24 14-37 2-25 (186)
441 2if2_A Dephospho-COA kinase; a 95.6 0.0065 2.2E-07 60.1 3.6 29 420-452 3-31 (204)
442 2bbw_A Adenylate kinase 4, AK4 95.6 0.0066 2.3E-07 62.1 3.7 25 13-37 27-51 (246)
443 3tui_C Methionine import ATP-b 95.6 0.019 6.4E-07 61.7 7.3 24 420-443 56-79 (366)
444 1uj2_A Uridine-cytidine kinase 95.6 0.0087 3E-07 61.5 4.6 25 13-37 22-46 (252)
445 1vt4_I APAF-1 related killer D 95.5 0.04 1.4E-06 66.5 10.7 45 388-440 128-172 (1221)
446 3sfz_A APAF-1, apoptotic pepti 95.5 0.061 2.1E-06 68.8 13.5 47 388-441 124-170 (1249)
447 1nn5_A Similar to deoxythymidy 95.5 0.0068 2.3E-07 60.4 3.6 27 13-39 9-35 (215)
448 4a1f_A DNAB helicase, replicat 95.5 0.023 7.9E-07 60.5 7.8 27 13-39 46-72 (338)
449 1g29_1 MALK, maltose transport 95.5 0.016 5.3E-07 62.9 6.5 24 420-443 31-54 (372)
450 3llm_A ATP-dependent RNA helic 95.5 0.07 2.4E-06 53.9 11.1 20 420-439 78-97 (235)
451 2bdt_A BH3686; alpha-beta prot 95.5 0.0065 2.2E-07 59.3 3.2 23 15-37 4-26 (189)
452 1lvg_A Guanylate kinase, GMP k 95.5 0.0079 2.7E-07 59.2 3.8 25 13-37 4-28 (198)
453 3eph_A TRNA isopentenyltransfe 95.5 0.017 5.8E-07 62.6 6.6 97 15-129 4-100 (409)
454 1w36_D RECD, exodeoxyribonucle 95.5 0.04 1.4E-06 64.2 10.3 26 13-38 164-189 (608)
455 1cke_A CK, MSSA, protein (cyti 95.5 0.0083 2.8E-07 60.4 4.0 23 420-442 7-29 (227)
456 1jjv_A Dephospho-COA kinase; P 95.4 0.0056 1.9E-07 60.7 2.6 22 15-37 4-25 (206)
457 2v54_A DTMP kinase, thymidylat 95.4 0.0062 2.1E-07 60.1 2.9 25 13-37 4-28 (204)
458 2z0h_A DTMP kinase, thymidylat 95.4 0.0086 3E-07 58.7 3.9 25 16-40 3-27 (197)
459 3r20_A Cytidylate kinase; stru 95.4 0.011 3.8E-07 59.4 4.7 23 420-442 11-33 (233)
460 2plr_A DTMP kinase, probable t 95.4 0.011 3.9E-07 58.6 4.8 23 420-442 6-28 (213)
461 2grj_A Dephospho-COA kinase; T 95.4 0.0095 3.3E-07 58.2 4.0 29 420-451 14-42 (192)
462 1vma_A Cell division protein F 95.4 0.026 9E-07 59.4 7.7 27 13-39 104-130 (306)
463 3foz_A TRNA delta(2)-isopenten 95.4 0.01 3.5E-07 61.8 4.4 34 420-456 12-45 (316)
464 2z0h_A DTMP kinase, thymidylat 95.4 0.011 3.6E-07 58.1 4.4 32 421-452 3-34 (197)
465 3d31_A Sulfate/molybdate ABC t 95.4 0.017 5.8E-07 61.9 6.3 124 420-583 28-202 (348)
466 3thx_B DNA mismatch repair pro 95.4 0.03 1E-06 67.7 8.9 115 13-132 673-797 (918)
467 3tau_A Guanylate kinase, GMP k 95.4 0.0082 2.8E-07 59.6 3.5 25 13-37 8-32 (208)
468 2r6a_A DNAB helicase, replicat 95.4 0.025 8.6E-07 63.5 7.9 35 420-454 205-240 (454)
469 1p9r_A General secretion pathw 95.3 0.024 8.3E-07 62.4 7.5 79 419-501 168-247 (418)
470 3ney_A 55 kDa erythrocyte memb 95.3 0.009 3.1E-07 58.3 3.5 25 13-37 19-43 (197)
471 3a00_A Guanylate kinase, GMP k 95.3 0.0086 2.9E-07 58.3 3.4 24 15-38 3-26 (186)
472 2bbs_A Cystic fibrosis transme 95.3 0.042 1.4E-06 57.4 8.8 123 420-582 66-231 (290)
473 1ls1_A Signal recognition part 95.3 0.039 1.3E-06 57.9 8.6 37 419-455 99-135 (295)
474 2j41_A Guanylate kinase; GMP, 95.3 0.0086 3E-07 59.2 3.4 25 13-37 6-30 (207)
475 1jjv_A Dephospho-COA kinase; P 95.3 0.0085 2.9E-07 59.3 3.4 27 420-450 4-30 (206)
476 3tr0_A Guanylate kinase, GMP k 95.3 0.0089 3E-07 59.0 3.5 24 14-37 8-31 (205)
477 1svm_A Large T antigen; AAA+ f 95.3 0.017 5.8E-07 62.7 5.9 29 420-451 171-199 (377)
478 4e22_A Cytidylate kinase; P-lo 95.3 0.012 4.3E-07 60.2 4.7 25 13-37 27-51 (252)
479 3ake_A Cytidylate kinase; CMP 95.3 0.012 4.2E-07 58.1 4.5 23 15-37 4-26 (208)
480 2wwf_A Thymidilate kinase, put 95.3 0.012 4.1E-07 58.4 4.4 23 420-442 12-34 (212)
481 3d3q_A TRNA delta(2)-isopenten 95.2 0.0095 3.2E-07 63.3 3.7 32 15-56 9-40 (340)
482 3c8u_A Fructokinase; YP_612366 95.2 0.021 7E-07 56.7 5.9 24 420-443 24-47 (208)
483 3bgw_A DNAB-like replicative h 95.2 0.059 2E-06 60.0 10.2 28 12-39 196-223 (444)
484 1svm_A Large T antigen; AAA+ f 95.2 0.013 4.5E-07 63.5 4.6 96 11-132 167-265 (377)
485 3b9q_A Chloroplast SRP recepto 95.1 0.068 2.3E-06 56.2 9.9 33 419-451 101-133 (302)
486 1htw_A HI0065; nucleotide-bind 95.1 0.01 3.6E-07 55.9 3.3 22 16-37 36-57 (158)
487 2j9r_A Thymidine kinase; TK1, 95.1 0.026 8.8E-07 55.5 6.1 98 17-132 32-139 (214)
488 1vt4_I APAF-1 related killer D 95.1 0.055 1.9E-06 65.4 9.9 23 14-36 151-173 (1221)
489 1tf7_A KAIC; homohexamer, hexa 95.1 0.015 5.1E-07 66.7 5.1 36 420-455 283-318 (525)
490 1oxx_K GLCV, glucose, ABC tran 95.1 0.013 4.3E-07 63.2 4.2 125 420-583 33-215 (353)
491 3ake_A Cytidylate kinase; CMP 95.1 0.013 4.6E-07 57.9 4.1 29 420-451 4-32 (208)
492 3sfz_A APAF-1, apoptotic pepti 95.1 0.043 1.5E-06 70.2 9.9 129 14-168 148-299 (1249)
493 1wb9_A DNA mismatch repair pro 95.1 0.061 2.1E-06 64.3 10.3 26 13-38 607-632 (800)
494 3c8u_A Fructokinase; YP_612366 95.0 0.0092 3.1E-07 59.2 2.7 27 12-38 21-47 (208)
495 2qor_A Guanylate kinase; phosp 95.0 0.011 3.6E-07 58.6 3.1 23 420-442 14-36 (204)
496 2eyq_A TRCF, transcription-rep 95.0 0.31 1.1E-05 61.0 17.1 33 420-452 626-658 (1151)
497 2bbw_A Adenylate kinase 4, AK4 95.0 0.015 5.1E-07 59.4 4.4 23 420-442 29-51 (246)
498 1kgd_A CASK, peripheral plasma 95.0 0.014 4.8E-07 56.4 3.9 23 420-442 7-29 (180)
499 1m7g_A Adenylylsulfate kinase; 95.0 0.017 5.8E-07 57.4 4.6 36 420-455 27-63 (211)
500 2i1q_A DNA repair and recombin 95.0 0.015 5.1E-07 62.1 4.4 25 13-37 98-122 (322)
No 1
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=100.00 E-value=4.7e-70 Score=669.11 Aligned_cols=650 Identities=56% Similarity=0.891 Sum_probs=555.5
Q ss_pred CCCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEE
Q psy2887 10 FYFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIII 89 (899)
Q Consensus 10 ~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL 89 (899)
++.++|++|+||||||||++|+++|+.+..+.+|..+.+.+++.++++.+..|.++.|+++..++.++..+....+++||
T Consensus 188 ~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL 267 (854)
T 1qvr_A 188 RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVIL 267 (854)
T ss_dssp CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEE
T ss_pred cCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEE
Confidence 46678999999999999999999999999889999999999999999999888899999999999999999866678999
Q ss_pred EEccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHHHHHHHHHhhhh
Q psy2887 90 FIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQK 169 (899)
Q Consensus 90 ~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~il~~~~~ 169 (899)
||||+|.+.+.+...+..++.+.|++.++++.+.+|++||.+++.+ +.++++|.+||+.|.|++|+.+++.+|++.++.
T Consensus 268 ~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~~~~-~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~ 346 (854)
T 1qvr_A 268 FIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYRE-IEKDPALERRFQPVYVDEPTVEETISILRGLKE 346 (854)
T ss_dssp EECCC-------------------HHHHHTTCCCEEEEECHHHHHH-HTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHH
T ss_pred EEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCchHHhh-hccCHHHHhCCceEEeCCCCHHHHHHHHHhhhh
Confidence 9999999998776666678889999999999999999999999877 789999999999999999999999999999999
Q ss_pred hhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHHHHHHHhhcch
Q psy2887 170 KYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDE 249 (899)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 249 (899)
.++.++++.++++++..++.++.+|+.++++|++++++++++++..++...+.|..+..+++.+..+..+.+.+.++.+.
T Consensus 347 ~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~ 426 (854)
T 1qvr_A 347 KYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDP 426 (854)
T ss_dssp HHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSH
T ss_pred hhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 98888999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccchHhhhhhhhcchHHHHHHHHH
Q psy2887 250 SSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKE 329 (899)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 329 (899)
.+.+|+..+++++..++..+..+...|..+...+..++.++++++.++.+.+.++..+++.+++.+.+..++.+++++..
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (854)
T 1qvr_A 427 DSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEA 506 (854)
T ss_dssp HHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcccHHHHHHHhhhhhHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhcccCCCccccccccccCcChHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhc
Q psy2887 330 KSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRS 409 (899)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~v~gq~~~~~~l~~~i~~~~~ 409 (899)
.+.. . ....++...++.+++..+++.++++|..++...+...+..+.+.+...++||+.+++.+..++...+.
T Consensus 507 ~~~~-~------~~~~~~~~~v~~~~l~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~~~ 579 (854)
T 1qvr_A 507 LSEK-L------RGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARA 579 (854)
T ss_dssp HHHH-S------SSCSSCCSEECHHHHHHHHHTTSSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHHGG
T ss_pred HHhh-h------cccccccCCcCHHHHHHHHHHHhCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHhc
Confidence 7652 0 13346667899999999999999999988877777778888888999999999999999999999998
Q ss_pred CCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhC
Q psy2887 410 GLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRK 489 (899)
Q Consensus 410 ~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~ 489 (899)
++.+|.+|.+++||+||||||||++|++||+.+++.+.+++.++|+++......+.++|.+++|+|+.+++.+++.++..
T Consensus 580 g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~ 659 (854)
T 1qvr_A 580 GLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRR 659 (854)
T ss_dssp GCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHC
T ss_pred ccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHhC
Confidence 98899999889999999999999999999999988889999999999999888999999999999999888899999999
Q ss_pred CCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhh--cCcHHHHHHHHHHHHhhc
Q psy2887 490 PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEME--KGDKEIIKLAVMNEVKIY 567 (899)
Q Consensus 490 ~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~--~~~~~~~~~~~~~~l~~~ 567 (899)
+++|||||||+++++.+++.|+++|++|.+++..|+++++++++||+|||.++..+.... +..+..+...+.+.+.+.
T Consensus 660 ~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~ 739 (854)
T 1qvr_A 660 PYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQH 739 (854)
T ss_dssp SSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred CCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999887665421 113455677777778999
Q ss_pred CChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 568 FRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 568 ~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
|+|+|++||+.++.|.|++.+++..|+..++.++..++...++.+.++++++++|++.+|++++++|++.+. +++.+
T Consensus 740 f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~---i~~~~ 816 (854)
T 1qvr_A 740 FRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRV---IQREL 816 (854)
T ss_dssp SCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHH---HHHHT
T ss_pred CCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHH---HHHHH
Confidence 999999999999999999999999999999999998888777778999999999999999999999999998 77776
Q ss_pred HHhhccCCccceeeccccCCCCceEehh
Q psy2887 648 KKIHKKSPEANFIFLGDLINKGPQSLDT 675 (899)
Q Consensus 648 ~~~~~~~~~~~li~~GD~~d~g~~~~~~ 675 (899)
..+....+..|++.++++..+.+
T Consensus 817 -----~~~~~~~i~~~~~~~~~~~~~~~ 839 (854)
T 1qvr_A 817 -----ETPLAQKILAGEVKEGDRVQVDV 839 (854)
T ss_dssp -----HHHHHHHHHHTSSCSSCEEEEEC
T ss_pred -----HHHHHHHHHhCcCCCCCEEEEEE
Confidence 34556778888888877766544
No 2
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=100.00 E-value=3.8e-61 Score=584.64 Aligned_cols=547 Identities=54% Similarity=0.861 Sum_probs=440.4
Q ss_pred CCCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEE
Q psy2887 10 FYFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIII 89 (899)
Q Consensus 10 ~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL 89 (899)
++.++|+||+||||||||++|+++|+.+..+.+|..+.++.++.+++ |.++.|+++..++.+|..+.. .+++||
T Consensus 198 ~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-----g~~~~G~~e~~l~~~~~~~~~-~~~~iL 271 (758)
T 3pxi_A 198 RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-----GTKYRGEFEDRLKKVMDEIRQ-AGNIIL 271 (758)
T ss_dssp CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------CTTHHHHHHHHHT-CCCCEE
T ss_pred CCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-----cccccchHHHHHHHHHHHHHh-cCCEEE
Confidence 46788999999999999999999999999999999999999998887 677899999999999999985 568899
Q ss_pred EEccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHHHHHHHHHhhhh
Q psy2887 90 FIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQK 169 (899)
Q Consensus 90 ~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~il~~~~~ 169 (899)
||| +..++.+.|++.++++.+.+|++||..+|++.+.++++|.+||..|.|+.|+.+++.+||+.++.
T Consensus 272 fiD------------~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 272 FID------------AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp EEC------------C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred EEc------------CchhHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHH
Confidence 999 23467788999999999999999999999999999999999999899999999999999999999
Q ss_pred hhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHHHHHHHhhcch
Q psy2887 170 KYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDE 249 (899)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 249 (899)
.++..+++.++++++..++.++.+|++++++|++++++++.+++.+.+.....|..+..+++.+..+..+.+.+....+.
T Consensus 340 ~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~ 419 (758)
T 3pxi_A 340 RYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEF 419 (758)
T ss_dssp TSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhCcCH
Confidence 99988999999999999999999999999999999999999999999998888999999999888888877766655443
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccchHhhhhhhhcchHHHHHHHHH
Q psy2887 250 SSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKE 329 (899)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 329 (899)
++...++.++..++..+......|..+
T Consensus 420 ---~~~~~l~~~~~~~~~~l~~~~~~~~~~-------------------------------------------------- 446 (758)
T 3pxi_A 420 ---EKAASLRDTEQRLREQVEDTKKSWKEK-------------------------------------------------- 446 (758)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHSGGGHH--------------------------------------------------
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHh--------------------------------------------------
Confidence 223333333333333333222222211
Q ss_pred hhhhcccCCCccccccccccCcChHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhc
Q psy2887 330 KSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRS 409 (899)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~v~gq~~~~~~l~~~i~~~~~ 409 (899)
.......++++++..+++.++++|+.++...+...+..+...+...++||+.+++.+..++...+.
T Consensus 447 --------------~~~~~~~v~~~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~ 512 (758)
T 3pxi_A 447 --------------QGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARA 512 (758)
T ss_dssp --------------HHCC---CCTHHHHHHHHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTT
T ss_pred --------------hcccCcccCHHHHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHHHc
Confidence 012246789999999999999999999988888888889999999999999999999999999999
Q ss_pred CCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhC
Q psy2887 410 GLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRK 489 (899)
Q Consensus 410 ~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~ 489 (899)
+...|.+|.+++||+||||||||++|+++|+.+++.+.++++++|+++......+ ++.+++.++..
T Consensus 513 ~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~--------------~~~l~~~~~~~ 578 (758)
T 3pxi_A 513 GLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS--------------GGQLTEKVRRK 578 (758)
T ss_dssp TCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-----------------CHHHHHHC
T ss_pred ccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc--------------cchhhHHHHhC
Confidence 9999999998999999999999999999999999989999999999997753322 34577888889
Q ss_pred CCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCC
Q psy2887 490 PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFR 569 (899)
Q Consensus 490 ~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 569 (899)
+++|||||||+++++.+++.|+++|++|.+++..|..+++.+++||+|||.+... ...+.+.+.+.|+
T Consensus 579 ~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~------------~~~~~~~~~~~f~ 646 (758)
T 3pxi_A 579 PYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASE------------KDKVMGELKRAFR 646 (758)
T ss_dssp SSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTC------------CHHHHHHHHHHSC
T ss_pred CCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhh------------HHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999999999999987652 1223344667799
Q ss_pred hhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCcccccccccccHHHHHHHHHH
Q psy2887 570 PEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKK 649 (899)
Q Consensus 570 ~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l~~ 649 (899)
|+|++|||.+|.|+|++.+++.+|+..++.++.+++...+..+.++++++++|++.+|+|++|+|++.+. +++.+
T Consensus 647 p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~---i~~~v-- 721 (758)
T 3pxi_A 647 PEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRA---IQKHV-- 721 (758)
T ss_dssp HHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHH---HHHHT--
T ss_pred HHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHH---HHHHH--
Confidence 9999999999999999999999999999999999988778889999999999999999999999999998 77777
Q ss_pred hhccCCccceeeccccCCCCceEehh
Q psy2887 650 IHKKSPEANFIFLGDLINKGPQSLDT 675 (899)
Q Consensus 650 ~~~~~~~~~li~~GD~~d~g~~~~~~ 675 (899)
..+..+.++.|++..++...+.+
T Consensus 722 ---~~~l~~~~l~~~~~~~~~~~~~~ 744 (758)
T 3pxi_A 722 ---EDRLSEELLRGNIHKGQHIVLDV 744 (758)
T ss_dssp ---HHHHHHHHHTTCSCSSSEEEEEE
T ss_pred ---HHHHHHHHHcCCCCCCCEEEEEE
Confidence 44566778888888777766544
No 3
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=100.00 E-value=1.6e-59 Score=572.03 Aligned_cols=529 Identities=45% Similarity=0.742 Sum_probs=461.8
Q ss_pred CCCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEE
Q psy2887 10 FYFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIII 89 (899)
Q Consensus 10 ~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL 89 (899)
++.++|+||+||||||||++|+++|+.+....+|..+.++.++.+++..+..+.++.|.++..++.+++.+... .++||
T Consensus 204 ~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~-~~~iL 282 (758)
T 1r6b_X 204 RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQD-TNSIL 282 (758)
T ss_dssp SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSS-SCEEE
T ss_pred ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhc-CCeEE
Confidence 46788999999999999999999999999889999999999999999999888889999999999999998743 47899
Q ss_pred EEccccccccCCCC-CchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHHHHHHHHHhhh
Q psy2887 90 FIDELHTMIGTGKV-EGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQ 168 (899)
Q Consensus 90 ~iDEi~~l~~~~~~-~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~il~~~~ 168 (899)
||||+|.+.+.+.. .+..++.+.|++.++++.+.+|++||.+++.+.+.+|++|.+||+.+.|++|+.+++.+|++.+.
T Consensus 283 ~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 283 FIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp EETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred EEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 99999999887654 34677889999999999999999999999988889999999999999999999999999999999
Q ss_pred hhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHHHHHHHhhcc
Q psy2887 169 KKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYD 248 (899)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 248 (899)
..+...+++.++++++..++.++.+|+..+++|++++++++++++.......
T Consensus 363 ~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~---------------------------- 414 (758)
T 1r6b_X 363 PKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPV---------------------------- 414 (758)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSS----------------------------
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcccc----------------------------
Confidence 9888888999999999999999999999999999999999988754432100
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccchHhhhhhhhcchHHHHHHHH
Q psy2887 249 ESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILK 328 (899)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 328 (899)
T Consensus 415 -------------------------------------------------------------------------------- 414 (758)
T 1r6b_X 415 -------------------------------------------------------------------------------- 414 (758)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhhcccCCCccccccccccCcChHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhh
Q psy2887 329 EKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSR 408 (899)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~v~gq~~~~~~l~~~i~~~~ 408 (899)
......|+.+++..+++.++++|+.++...+...+..+.+.+...++||+.+++.+..++...+
T Consensus 415 ----------------~~~~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~~ 478 (758)
T 1r6b_X 415 ----------------SKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMAR 478 (758)
T ss_dssp ----------------CCCCCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHHH
T ss_pred ----------------cccCCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHh
Confidence 0012468999999999999999999998888899999999999999999999999999999999
Q ss_pred cCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHh
Q psy2887 409 SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRR 488 (899)
Q Consensus 409 ~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~ 488 (899)
.|+.+|.+|.+++||+||||||||++|+++|+.+ +.+++.++|+++...+.++.++|.++||+|+++++.+.+.++.
T Consensus 479 ~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l---~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~ 555 (758)
T 1r6b_X 479 AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIK 555 (758)
T ss_dssp TTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHH
T ss_pred cccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh---cCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHh
Confidence 9999999999999999999999999999999999 7899999999999999999999999999999999899999999
Q ss_pred CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhh-hcCcHHHHHHHHHHHHhhc
Q psy2887 489 KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEM-EKGDKEIIKLAVMNEVKIY 567 (899)
Q Consensus 489 ~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~-~~~~~~~~~~~~~~~l~~~ 567 (899)
++++|||||||+++++++++.|+++|++|.+++..|+++++.+++||+|||.+...+... ++.........+.+.+.+.
T Consensus 556 ~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 635 (758)
T 1r6b_X 556 HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKI 635 (758)
T ss_dssp CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHH
T ss_pred CCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999987655431 1111111223445667788
Q ss_pred CChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 568 FRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 568 ~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
|+|+|++||+.+|.|+|++.+++..|+..++.++..++...++.+.++++++++|++.+|+..+++|++.+. +++.+
T Consensus 636 ~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~---i~~~~ 712 (758)
T 1r6b_X 636 FTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARV---IQDNL 712 (758)
T ss_dssp SCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHH---HHHHH
T ss_pred cCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHH---HHHHH
Confidence 999999999999999999999999999999999988888877789999999999999999999999999998 77777
Q ss_pred HHhhccCCccceeeccccCCCCceEeh
Q psy2887 648 KKIHKKSPEANFIFLGDLINKGPQSLD 674 (899)
Q Consensus 648 ~~~~~~~~~~~li~~GD~~d~g~~~~~ 674 (899)
..+....++.|++..+++..+.
T Consensus 713 -----~~~l~~~~l~~~~~~~~~~~~~ 734 (758)
T 1r6b_X 713 -----KKPLANELLFGSLVDGGQVTVA 734 (758)
T ss_dssp -----THHHHHHHHHSTTTTCEEEEEE
T ss_pred -----HHHHHHHHHcCcCCCCCEEEEE
Confidence 4455666777777666665544
No 4
>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture, hydrolase; 2.72A {Shigella flexneri 2A}
Probab=100.00 E-value=8.1e-43 Score=367.49 Aligned_cols=263 Identities=35% Similarity=0.680 Sum_probs=235.5
Q ss_pred ccccccccccHHHHHHHHHHhhccCCccceeeccccCCCCceEehhHHHHHhcCCccEEEccCChHhHHhHhhhcccCch
Q psy2887 630 IYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVLININKKSK 709 (899)
Q Consensus 630 ~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~~~~l~~~~~~~~~v~GNHe~~~l~~~~~~~~~~~ 709 (899)
.+.++||||+++.|.++++++++.+..+.+|++||++||||.+.+++++++++..++.+|+||||.+++.+..+......
T Consensus 3 i~vigDiHG~~~~l~~ll~~~~~~~~~d~~v~lGD~vdrG~~s~~~l~~l~~l~~~~~~v~GNHe~~~l~~~~g~~~~~~ 82 (280)
T 2dfj_A 3 TYLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKP 82 (280)
T ss_dssp EEEECCCCSCHHHHHHHHHHTTCCTTTCEEEECSCCSSSSSCHHHHHHHHHHTGGGEEECCCHHHHHHHHHHTTSSCCCG
T ss_pred EEEEecCCCCHHHHHHHHHHhCCCCCCCEEEEeCCcCCCCCccHHHHHHHHhCCCceEEEECCCcHHHHhHhcCCcccch
Confidence 36789999999999999999998767789999999999999999999999998667999999999999998877555445
Q ss_pred hchHHHhhCCcChHHHHHHHhcCCceEEeC--CEEEEecccccccchHHHHHHhHHHHHHhccccHHHHHHHhcCCCCCC
Q psy2887 710 LDTFDDILDAPDKKKLVSWLRTQPLAIYYK--KYLMIHAGVAKQWTAQQTIKLSHQVEKILRTSYWKNLFFKLYNHNSIN 787 (899)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~l~~lp~~~~~~--~~~~vHAg~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 787 (899)
.+++.+++..+...++.+||+++|+++..+ ++++||||++|.|+.++...++++++..|+++.|..++..+|++.+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~lP~~~~~~~~~~~~vHaGi~p~~~l~~~~~~~r~~e~~l~~~~~~~~~~~l~~d~~~~ 162 (280)
T 2dfj_A 83 KDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAHAGITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMPNN 162 (280)
T ss_dssp GGCCHHHHTSTTHHHHHHHHHTSCSEEEETTTTEEEESSCCCTTCCHHHHHHHHHHHHHHHHSTTHHHHHHHTTCSCCCS
T ss_pred hhhHHHHhhhhHHHHHHHHHHhCCcEEEECCCeEEEEeCCCCcCcCHHHHHHHHHHHHHhhcCCcHHHHHHHhcCCCCCC
Confidence 567777777777889999999999998765 799999999999999988889999999999999988889999999989
Q ss_pred CCcccccccccchhhHHHHHhhhccccccCCCCccccccccCCCCCCCCCCCCCccCCCCCCCCceEEEccCCCC-Cccc
Q psy2887 788 WDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRKTIDITVLFGHWSTL-GLIM 866 (899)
Q Consensus 788 w~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~vv~GH~~~~-~~~~ 866 (899)
|.+++ +|.+|.++..+++||+||++.+|.+++..++.+. ..++.+.|||+.+++.....+|||||||+. ++..
T Consensus 163 w~~~~-----~G~~r~~~~~~~~tr~rf~~~~g~l~~~~r~~~~-~~~~g~~~w~~~~~~~~~~~~vv~GHt~~~~g~~~ 236 (280)
T 2dfj_A 163 WSPEL-----RGLGRLRFITNAFTRMRFCFPNGQLDMYSKESPE-EAPAPLKPWFAIPGPVAEEYSIAFGHWASLEGKGT 236 (280)
T ss_dssp CCTTC-----CHHHHHHHHHHHHHTCCEEETTBEEESSCCSCGG-GCCSSCEEGGGSCCTTTTTSEEEECCCGGGTTCSC
T ss_pred cCCCC-----CCceeEEEeccHHHHHHHhhcCCcEeEEeccChh-hcCccccchhhccccccCCceEEECCcccccCccc
Confidence 98875 8899999999999999999999999988877653 335689999999988778899999999986 7778
Q ss_pred CCCeEEcccccccCCeeEEEEecCCceEEecc
Q psy2887 867 KPNIICLDTGCVWGNKLTALCLEDRSIIQVNN 898 (899)
Q Consensus 867 ~~~~~~iDtG~v~gg~Lta~~~~~~~~~~v~~ 898 (899)
.+|+++|||||||||+|||+++++++++||++
T Consensus 237 ~~~~i~iDTG~v~gG~Ltal~l~~~~~~~v~~ 268 (280)
T 2dfj_A 237 PEGIYALDTGCCWGGSLTCLRWEDKQYFVQPS 268 (280)
T ss_dssp CTTEEECCCCTTTTSEEEEEETTTTEEEEEEC
T ss_pred cCCEEEeecccccCCEEEEEEeCCCcEEEEEC
Confidence 89999999999999999999999999999986
No 5
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=5.9e-42 Score=404.23 Aligned_cols=423 Identities=19% Similarity=0.291 Sum_probs=279.3
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
+.+.+|||+||||||||+||+++|+++ +.+++.+++..+. +++.|+.++.++.+|..|.. ..|+|||
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~el----------g~~~~~v~~~~l~--sk~~gese~~lr~lF~~A~~-~~PsIIf 302 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLINGPEIM--SKLAGESESNLRKAFEEAEK-NAPAIIF 302 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTT----------TCEEEEEEHHHHH--SSCTTHHHHHHHHHHHHHTT-SCSEEEE
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHh----------CCeEEEEEhHHhh--cccchHHHHHHHHHHHHHHH-cCCeEEE
Confidence 456789999999999999999999998 8999999999988 78999999999999999984 4699999
Q ss_pred EccccccccCCCCCch---hhHHHhhhhhh----cCCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCHHHH
Q psy2887 91 IDELHTMIGTGKVEGS---IDAGNMLKPEL----SRGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEET 160 (899)
Q Consensus 91 iDEi~~l~~~~~~~~~---~~~~~~l~~~l----~~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~~e~ 160 (899)
|||+|.|++.+.+..+ ..+.+.|+..| +++.++||++||.++ .+|++|+| ||+. |+++.|+.++|
T Consensus 303 IDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d-----~LD~ALrR~GRFd~~I~i~~Pd~~~R 377 (806)
T 3cf2_A 303 IDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPN-----SIDPALRRFGRFDREVDIGIPDATGR 377 (806)
T ss_dssp EESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTT-----TSCTTTTSTTSSCEEEECCCCCHHHH
T ss_pred EehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChh-----hcCHHHhCCcccceEEecCCCCHHHH
Confidence 9999999987654332 33455555555 457899999999999 89999999 9996 99999999999
Q ss_pred HHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHHH
Q psy2887 161 ISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEH 240 (899)
Q Consensus 161 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 240 (899)
.+||+.+++......++ .+..++..+.+|.+ +++..++.+|+..+..+. .
T Consensus 378 ~~IL~~~l~~~~~~~dv-----dl~~lA~~T~Gfsg-----aDL~~Lv~eA~~~A~~r~--------------------~ 427 (806)
T 3cf2_A 378 LEILQIHTKNMKLADDV-----DLEQVANETHGHVG-----ADLAALCSEAALQAIRKK--------------------M 427 (806)
T ss_dssp HHHHHHTCSSSEECTTC-----CHHHHHHHCCSCCH-----HHHHHHHHHHHHHHHHHH--------------------H
T ss_pred HHHHHHHhcCCCCCccc-----CHHHHHHhcCCCCH-----HHHHHHHHHHHHHHHHhc--------------------c
Confidence 99999888775543332 35677788777655 677777777764332110 0
Q ss_pred HHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccchHhhhhhhhcch
Q psy2887 241 EAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGEL 320 (899)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (899)
............ +.... ..-..
T Consensus 428 ~~i~~~~~~~~~---------------------------------------------------------e~~~~-~~v~~ 449 (806)
T 3cf2_A 428 DLIDLEDETIDA---------------------------------------------------------EVMNS-LAVTM 449 (806)
T ss_dssp HHGGGTCCCCSH---------------------------------------------------------HHHHH-CEECT
T ss_pred ccccccccccch---------------------------------------------------------hhhcc-ceeeH
Confidence 000000000000 00000 00001
Q ss_pred HHHHHHHHHhhhhcccCCCccccccccccCcChHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHhhccCCChHHHHHHH
Q psy2887 321 NKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAV 400 (899)
Q Consensus 321 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~v~gq~~~~~~l 400 (899)
.++...+....++.+. +.....+.++| .++.|.+++++.|
T Consensus 450 ~Df~~Al~~~~ps~~r------~~~~~~p~v~w----------------------------------~diggl~~~k~~l 489 (806)
T 3cf2_A 450 DDFRWALSQSNPSALR------ETVVEVPQVTW----------------------------------EDIGGLEDVKREL 489 (806)
T ss_dssp THHHHHHSSSSCCCCC------CCCCBCCCCCS----------------------------------TTCCSCHHHHHHH
T ss_pred HHHHHHHHhCCCcccc------cccccCCCCCH----------------------------------HHhCCHHHHHHHH
Confidence 1122222222221111 11111122232 5667888888888
Q ss_pred HHHHHHhhcC---C-CCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccc
Q psy2887 401 SNAIRRSRSG---L-SDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGY 476 (899)
Q Consensus 401 ~~~i~~~~~~---~-~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~ 476 (899)
.+.+...... + .....|...+||+||||||||++|+++|..+ +.+|+.++++++.++ |+|.
T Consensus 490 ~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~~f~~v~~~~l~s~------------~vGe 554 (806)
T 3cf2_A 490 QELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTM------------WFGE 554 (806)
T ss_dssp TTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TCEEEECCHHHHHTT------------TCSS
T ss_pred HHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh---CCceEEeccchhhcc------------ccch
Confidence 8777542110 0 0011222359999999999999999999999 999999999998765 8887
Q ss_pred ccc--chhhHHHHhCCCEEEEEccccccCH--------------HHHHHHHHhhcCCceecCCCceEecCCeEEEEecCC
Q psy2887 477 EEG--GYLTEIVRRKPYSLILLDEIEKANS--------------DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNL 540 (899)
Q Consensus 477 ~~~--~~l~~~~~~~~~~vl~lDEid~~~~--------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~ 540 (899)
++. +.+|..++...+|||||||||.+.+ .+.+.||..|+.-. ...+++||+|||.
T Consensus 555 se~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~---------~~~~V~vi~aTN~ 625 (806)
T 3cf2_A 555 SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS---------TKKNVFIIGATNR 625 (806)
T ss_dssp CHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC---------SSSSEEEECC-CC
T ss_pred HHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC---------CCCCEEEEEeCCC
Confidence 776 7788889999999999999998753 36899999998521 2356788889997
Q ss_pred ChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhh--ccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHH
Q psy2887 541 GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAA 618 (899)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~ 618 (899)
+.. ++|+++. |||.+|.|+.|+.++..+|++.++.+ ..+...+ -
T Consensus 626 p~~------------------------lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~-------~~~~~~~---d 671 (806)
T 3cf2_A 626 PDI------------------------IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK-------SPVAKDV---D 671 (806)
T ss_dssp SSS------------------------SCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSC-------C--CCC-----
T ss_pred chh------------------------CCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcC-------CCCCCCC---C
Confidence 543 6788886 99999999999999999998776632 1111111 1
Q ss_pred HHHHHhcccCccccccccccc
Q psy2887 619 LKKISNIGFDLIYGARDVHGC 639 (899)
Q Consensus 619 ~~~L~~~~~~~~~~~~di~~~ 639 (899)
++.|++ ....|...||...
T Consensus 672 l~~la~--~t~g~SGadi~~l 690 (806)
T 3cf2_A 672 LEFLAK--MTNGFSGADLTEI 690 (806)
T ss_dssp ----------------CHHHH
T ss_pred HHHHHH--hCCCCCHHHHHHH
Confidence 344554 2334666787765
No 6
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=100.00 E-value=8.7e-32 Score=292.75 Aligned_cols=294 Identities=55% Similarity=0.894 Sum_probs=258.0
Q ss_pred HHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEec
Q psy2887 374 VEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRID 453 (899)
Q Consensus 374 ~~~~~l~~l~~~l~~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~ 453 (899)
.+...+.++.+.+.+.++||+.+++.+...+.....++..|.+|..+++|+||||||||++|+++|+.+...+.+++.++
T Consensus 3 ~~~~~l~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~ 82 (311)
T 4fcw_A 3 GEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 82 (311)
T ss_dssp HHHHHHHTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred cHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEee
Confidence 45667888999999999999999999999999998888888888889999999999999999999999988788999999
Q ss_pred ccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeE
Q psy2887 454 MSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTI 533 (899)
Q Consensus 454 ~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~ 533 (899)
|+.+........++|..++++|....+.+...+..++++||||||++++++.+++.|+++|+++.+.+..+..+++++++
T Consensus 83 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 162 (311)
T 4fcw_A 83 MTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTV 162 (311)
T ss_dssp GGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEE
T ss_pred cccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcE
Confidence 99998887788999999999998887889999999999999999999999999999999999999998889999999999
Q ss_pred EEEecCCChhhhhhhhcC--cHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcc
Q psy2887 534 IVMTSNLGSDKIKEMEKG--DKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 611 (899)
Q Consensus 534 iI~tsn~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~ 611 (899)
||+|||.+...+....+. .+..+...+.+.+.+.|+|+|++||+.++.|.|++.+++.+|+..++.++...+...+..
T Consensus 163 iI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~ 242 (311)
T 4fcw_A 163 IIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRIS 242 (311)
T ss_dssp EEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCE
T ss_pred EEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcE
Confidence 999999988777665433 344566666667788999999999999999999999999999999999998888776777
Q ss_pred eeecHHHHHHHHhcccCcccccccccccHHHHHHHHHHhhccCCccceeeccccCCCCceEehh
Q psy2887 612 LKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDT 675 (899)
Q Consensus 612 ~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~ 675 (899)
+.++++++++|.+.+|++++++|++... +++++ ..+....+..||+.+.++..+.+
T Consensus 243 ~~~~~~~~~~l~~~~~~~~gn~R~L~~~---i~~~~-----~~~~~~~i~~~~~~~~~~i~i~~ 298 (311)
T 4fcw_A 243 LELTEAAKDFLAERGYDPVFGARPLRRV---IQREL-----ETPLAQKILAGEVKEGDRVQVDV 298 (311)
T ss_dssp EEECHHHHHHHHHHSCBTTTBTTTHHHH---HHHHT-----HHHHHHHHHHTSSCTTCEEEEEE
T ss_pred EEeCHHHHHHHHHhCCCccCCchhHHHH---HHHHH-----HHHHHHHHHhCCCCCCCEEEEEE
Confidence 9999999999999788778999999988 76666 23445667777877776665544
No 7
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=1.6e-31 Score=322.98 Aligned_cols=395 Identities=21% Similarity=0.319 Sum_probs=259.4
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
..+.++||+|||||||||+|+++|+.+ +..++.+++..+. +.+.|+.+..++.+|..+... .|+++|
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l----------~~~~i~v~~~~l~--~~~~g~~~~~l~~vf~~a~~~-~p~il~ 302 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLINGPEIM--SKLAGESESNLRKAFEEAEKN-APAIIF 302 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTT----------TCEEEEEEHHHHS--SSSTTHHHHHHHHHHHHHHHH-CSEEEE
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHc----------CCcEEEEEchHhh--hhhhhhHHHHHHHHHHHHHhc-CCcEEE
Confidence 456689999999999999999999987 7788999988877 567899999999999998754 589999
Q ss_pred EccccccccCCCCCch---hhHHHhhhhhhc----CCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCHHHH
Q psy2887 91 IDELHTMIGTGKVEGS---IDAGNMLKPELS----RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEET 160 (899)
Q Consensus 91 iDEi~~l~~~~~~~~~---~~~~~~l~~~l~----~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~~e~ 160 (899)
|||++.+.+.+..... ..+.+.|+..++ +..+++|++||.++ .+++++.+ ||.. +.++.|+.++|
T Consensus 303 iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~-----~ld~al~r~gRf~~~i~i~~p~~~~r 377 (806)
T 1ypw_A 303 IDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPN-----SIDPALRRFGRFDREVDIGIPDATGR 377 (806)
T ss_dssp EESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTT-----TSCTTTTSTTSSCEEECCCCCCHHHH
T ss_pred eccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCch-----hcCHHHhcccccccccccCCCCHHHH
Confidence 9999999986543322 234445555553 56799999999998 89999998 9975 89999999999
Q ss_pred HHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHHH
Q psy2887 161 ISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEH 240 (899)
Q Consensus 161 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 240 (899)
.+|++.+...+....+.. +..++..+.+|.+ .+...++..++.......... .
T Consensus 378 ~~il~~~~~~~~l~~~~~-----l~~la~~t~g~~g-----~dl~~l~~ea~~~a~r~~~~~-i---------------- 430 (806)
T 1ypw_A 378 LEILQIHTKNMKLADDVD-----LEQVANETHGHVG-----ADLAALCSEAALQAIRKKMDL-I---------------- 430 (806)
T ss_dssp HHHHHHTTTTSCCCTTCC-----THHHHHSCSSCCH-----HHHHHHHHHHHHHHHHHTTTT-T----------------
T ss_pred HHHHHHHHhcCCCcccch-----hHHHHHhhcCcch-----HHHHHHHHHHHHHHHhhhccc-c----------------
Confidence 999998887654333322 3445555555443 333333333322111000000 0
Q ss_pred HHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhccchHhhhhhhhcch
Q psy2887 241 EAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGEL 320 (899)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (899)
+. .. ..+. ..
T Consensus 431 -------~~-------------------------------------~~--~~~~---~~--------------------- 440 (806)
T 1ypw_A 431 -------DL-------------------------------------ED--ETID---AE--------------------- 440 (806)
T ss_dssp -------SC-------------------------------------HH--HHCC---HH---------------------
T ss_pred -------ch-------------------------------------hh--hccc---hh---------------------
Confidence 00 00 0000 00
Q ss_pred HHHHHHHHHhhhhcccCCCccccccccccCcChHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHhhccCCChHHHHHHH
Q psy2887 321 NKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAV 400 (899)
Q Consensus 321 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~v~gq~~~~~~l 400 (899)
......++.+++...+............ .........+++|++.+++.+
T Consensus 441 ------------------------~~~~~~v~~~d~~~al~~~~~s~~~~~~-------~~~~~v~~~di~gl~~vk~~l 489 (806)
T 1ypw_A 441 ------------------------VMNSLAVTMDDFRWALSQSNPSALRETV-------VEVPQVTWEDIGGLEDVKREL 489 (806)
T ss_dssp ------------------------HHTTCCCCTTHHHHHHHHSCCCCCCCCC-------CCCCCCSSCSSSCCCCHHHHH
T ss_pred ------------------------hhhhhhhhhhhhhccccccCchhhhhhc-------ccCccccccccccchhhhhhH
Confidence 0000111222222222211100000000 000001225678888888888
Q ss_pred HHHHHHhhcC----CCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccc
Q psy2887 401 SNAIRRSRSG----LSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGY 476 (899)
Q Consensus 401 ~~~i~~~~~~----~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~ 476 (899)
...+...... ......+..++||+||||||||++|+++|..+ +.+++.++++++.+. |+|.
T Consensus 490 ~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~------------~~g~ 554 (806)
T 1ypw_A 490 QELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTM------------WFGE 554 (806)
T ss_dssp HTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH---TCCCCCCCCSSSTTC------------CTTT
T ss_pred HHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh---CCCEEEEechHhhhh------------hcCc
Confidence 7776432110 01111233469999999999999999999999 788999999887654 5555
Q ss_pred ccc--chhhHHHHhCCCEEEEEccccccC--------------HHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCC
Q psy2887 477 EEG--GYLTEIVRRKPYSLILLDEIEKAN--------------SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNL 540 (899)
Q Consensus 477 ~~~--~~l~~~~~~~~~~vl~lDEid~~~--------------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~ 540 (899)
.+. +.++..++...++||||||||++. ..+++.|++.|+... ...+++||+|||.
T Consensus 555 ~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~---------~~~~v~vI~tTN~ 625 (806)
T 1ypw_A 555 SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS---------TKKNVFIIGATNR 625 (806)
T ss_dssp SSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC---------------CCBCCCCCBS
T ss_pred cHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccc---------ccCCeEEEEecCC
Confidence 554 557777777788999999999763 356788999888531 2467889999996
Q ss_pred ChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhh--ccCeEEEecCCCHHHHHHHHHHHHH
Q psy2887 541 GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLN 599 (899)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~~~~~~i~~~~l~ 599 (899)
... ++|.+++ ||+.+|.|++++.++..+|++.++.
T Consensus 626 ~~~------------------------ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~ 662 (806)
T 1ypw_A 626 PDI------------------------IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 662 (806)
T ss_dssp CGG------------------------GSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTS
T ss_pred ccc------------------------CCHHHhCccccCceeecCCCCHHHHHHHHHHHhc
Confidence 543 6777887 9999999999999999999887763
No 8
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.96 E-value=2.2e-28 Score=278.92 Aligned_cols=247 Identities=55% Similarity=0.890 Sum_probs=205.9
Q ss_pred CCCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEE
Q psy2887 10 FYFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIII 89 (899)
Q Consensus 10 ~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL 89 (899)
++.++|+||+||||||||++|+++|+.+..+.+|..+.+.+++.++++ +.+.|+++..++.+|..+.. .+++||
T Consensus 198 r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-----~~~~g~~e~~~~~~~~~~~~-~~~~iL 271 (468)
T 3pxg_A 198 RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-----TKYRGEFEDRLKKVMDEIRQ-AGNIIL 271 (468)
T ss_dssp CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------CTTHHHHHHHHHT-CCCCEE
T ss_pred ccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-----ccccchHHHHHHHHHHHHHh-cCCeEE
Confidence 467889999999999999999999999999999999999999988876 56788888889999999875 458899
Q ss_pred EEccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHHHHHHHHHhhhh
Q psy2887 90 FIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQK 169 (899)
Q Consensus 90 ~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~il~~~~~ 169 (899)
||| +..++.+.|++.|+++.+.+|++||..+|++.+.++++|.+||..|.|++|+.+++..||+.++.
T Consensus 272 fiD------------~~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 272 FID------------AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp EEC------------C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred EEe------------CchhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHH
Confidence 999 23467889999999999999999999999988899999999999999999999999999999999
Q ss_pred hhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHHHHHHHhhcch
Q psy2887 170 KYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDE 249 (899)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 249 (899)
.++.++++.++++++..++.++.+|++++++|++++++++.+++.+++.....|..+..+++.+..+..+.+......+.
T Consensus 340 ~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~l~~~~~~~~~~~d~ 419 (468)
T 3pxg_A 340 RYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEF 419 (468)
T ss_dssp TSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTSCCSSTHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCcCH
Confidence 99989999999999999999999999999999999999999999999999999999999999999998888766665553
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2887 250 SSKKRLLLIKKEINKLEIKYANLEKIWK 277 (899)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (899)
.+...++.+...++.++......|.
T Consensus 420 ---~~~~~l~~~~~~~~~~~~~~~~~~~ 444 (468)
T 3pxg_A 420 ---EKAASLRDTEQRLREQVEDTKKSWK 444 (468)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHSGGG
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666677777777666666665
No 9
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine tetraphosphatase, monomer, PSI- 2, protein structure initiative, nysgrc; 2.05A {Trypanosoma brucei}
Probab=99.94 E-value=7.9e-27 Score=244.59 Aligned_cols=212 Identities=28% Similarity=0.426 Sum_probs=151.8
Q ss_pred cccccccccccHHHHHHHHHHhhccCCccceeeccccCCCCceEehhHHHHHhcCCccEEEccCChHhHHhHhhhccc--
Q psy2887 629 LIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVLININK-- 706 (899)
Q Consensus 629 ~~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~~~~l~~~~~~~~~v~GNHe~~~l~~~~~~~~-- 706 (899)
+.+.++|+||+++.|.++++.+++.++.|.+|++||++|+|+.+.++++++++.. +.+|+||||.+++.+..+...
T Consensus 20 ~i~visDiHg~~~~l~~~l~~~~~~~~~d~ii~~GD~vd~g~~~~~~l~~l~~~~--~~~v~GNHd~~~~~~~~~~~~~~ 97 (262)
T 2qjc_A 20 RVIIVGDIHGCRAQLEDLLRAVSFKQGSDTLVAVGDLVNKGPDSFGVVRLLKRLG--AYSVLGNHDAKLLKLVKKLGKKE 97 (262)
T ss_dssp CEEEECCCTTCHHHHHHHHHHHTCCTTTSEEEECSCCSSSSSCHHHHHHHHHHHT--CEECCCHHHHHHHHHHHCC----
T ss_pred eEEEEeCCCCCHHHHHHHHHHHhccCCCCEEEEecCCCCCCCCHHHHHHHHHHCC--CEEEeCcChHHHHhhhcCCCccc
Confidence 4577899999999999999999887666999999999999999999999998764 899999999999886654321
Q ss_pred ---CchhchHHHhhCCcChHHHHHHHhcCCceEEeC--CEEEEecccccccchHHHHHHhHHHHHHhccccHHHHHHHhc
Q psy2887 707 ---KSKLDTFDDILDAPDKKKLVSWLRTQPLAIYYK--KYLMIHAGVAKQWTAQQTIKLSHQVEKILRTSYWKNLFFKLY 781 (899)
Q Consensus 707 ---~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~~--~~~~vHAg~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 781 (899)
..+..+.-.+.......++.+||+++|++++.+ ++++||||+.|.+.+.. +....+
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~lP~~~~i~~~~i~~vHgg~~p~~~~~~------~~~~~l------------- 158 (262)
T 2qjc_A 98 CLKGRDAKSSLAPLAQSIPTDVETYLSQLPHIIRIPAHNVMVAHAGLHPQRPVDR------QYEDEV------------- 158 (262)
T ss_dssp ---------CHHHHHHHCCHHHHHHHHTCCSEEEEGGGTEEEESSCCCTTSCGGG------CCHHHH-------------
T ss_pred cccccchHHHHHHHHhhhhHHHHHHHHcCCcEEEECCCcEEEEECCCCCCCCccc------CCHHHH-------------
Confidence 111111111112233567899999999998864 89999999999765432 111111
Q ss_pred CCCCCCCCcccccccccchhhHHHHHhhhccccccCC------CCccccccccCCCCCCCCCCCCCccCCCCCCCCceEE
Q psy2887 782 NHNSINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKI------DGTIEFIKKNIKNNNFQNNYIPWFDLPNRKTIDITVL 855 (899)
Q Consensus 782 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~------~g~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~vv 855 (899)
+++|++.. +|.. +. .+ ...++...+|++.+.+ ...||
T Consensus 159 -----------------------------~~ir~~~~~~~~~~~G~~-~~-~~---d~~~~~~~~w~~~~~g---~~~vv 201 (262)
T 2qjc_A 159 -----------------------------TTMRNLIEKEQEATGGVT-LT-AT---EETNDGGKPWASMWRG---PETVV 201 (262)
T ss_dssp -----------------------------HHCCEEEEC-------CC-EE-EE---SCSTTCCEEGGGGCCC---SSEEE
T ss_pred -----------------------------hhhhhcccccccCCCCcc-cc-cc---CCCCcCCCChhhccCC---CCEEE
Confidence 11121111 1110 00 00 0012345678766553 57899
Q ss_pred EccCCCCCcccCC--CeEEcccccccCCeeEEEEecCCceEEecc
Q psy2887 856 FGHWSTLGLIMKP--NIICLDTGCVWGNKLTALCLEDRSIIQVNN 898 (899)
Q Consensus 856 ~GH~~~~~~~~~~--~~~~iDtG~v~gg~Lta~~~~~~~~~~v~~ 898 (899)
||||++.++...+ ++++|||||++||+|||+++++++++||++
T Consensus 202 fGHt~~~~~~~~~~~~~i~IDtG~~~gG~Lt~l~l~~~~~~~~~~ 246 (262)
T 2qjc_A 202 FGHDARRGLQEQYKPLAIGLDSRCVYGGRLSAAVFPGGCIISVPG 246 (262)
T ss_dssp ECCCGGGCCBCTTTTTEEECCCBGGGTSEEEEEEETTTEEEEEEC
T ss_pred ECCCccccccccCCCCEEEeeCccccCCeeEEEEEcCCcEEEEec
Confidence 9999999988888 999999999999999999999999999986
No 10
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.92 E-value=2.4e-25 Score=246.80 Aligned_cols=255 Identities=22% Similarity=0.357 Sum_probs=177.5
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHHh----hcCCCC--CCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEec
Q psy2887 380 LNIENLLCKRVVGQDEAISAVSNAIRRS----RSGLSD--AKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRID 453 (899)
Q Consensus 380 ~~l~~~l~~~v~gq~~~~~~l~~~i~~~----~~~~~~--~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~ 453 (899)
.++.+.|.+.|+||+.+++.+..++... ..+... ...+..++||+||||||||++|++||+.+ +.+|+.++
T Consensus 7 ~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~---~~~~~~~~ 83 (363)
T 3hws_A 7 HEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL---DVPFTMAD 83 (363)
T ss_dssp HHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEE
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEec
Confidence 4566777888999999999999888422 222211 11233479999999999999999999999 88999999
Q ss_pred ccccccccchhhccCCCCCcccccccchhhHHHH-------hCCCEEEEEccccccCHH--------------HHHHHHH
Q psy2887 454 MSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVR-------RKPYSLILLDEIEKANSD--------------VFNILLQ 512 (899)
Q Consensus 454 ~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~-------~~~~~vl~lDEid~~~~~--------------~~~~Ll~ 512 (899)
++++... +|+|....+.+...+. .+.++||||||||++++. +++.|++
T Consensus 84 ~~~l~~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~ 152 (363)
T 3hws_A 84 ATTLTEA-----------GYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLK 152 (363)
T ss_dssp HHHHTTC-----------HHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHH
T ss_pred hHHhccc-----------ccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHH
Confidence 9876432 2445443334444433 335689999999999876 9999999
Q ss_pred hhcCCce---ecCCCceEec--------CCeEEEEecCC-Chhhhhhh-hcC-----------------cHHHHHHHH--
Q psy2887 513 ILDDGRL---TDNRGRTINF--------RNTIIVMTSNL-GSDKIKEM-EKG-----------------DKEIIKLAV-- 560 (899)
Q Consensus 513 ~le~g~~---~~~~g~~~~~--------~~~~iI~tsn~-~~~~~~~~-~~~-----------------~~~~~~~~~-- 560 (899)
+|+ |.. .+..|...+. +|.+||+++|. +.+.+... .+. ....+...+
T Consensus 153 ~le-g~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~ 231 (363)
T 3hws_A 153 LIE-GTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEP 231 (363)
T ss_dssp HHH-CC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCH
T ss_pred Hhc-CceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCH
Confidence 999 543 3344554444 44455555554 55443332 000 011111111
Q ss_pred HHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHH----HHHHHHHHHHhcCcceeecHHHHHHHHhcccCcccccccc
Q psy2887 561 MNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANI----QLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDV 636 (899)
Q Consensus 561 ~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~----~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di 636 (899)
.+.....|+|+|++||+.++.|.|++.+++.+|+.. .+.++.+.+...+..+.++++++++|++.+|+|++|+|.|
T Consensus 232 ~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L 311 (363)
T 3hws_A 232 EDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGL 311 (363)
T ss_dssp HHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTH
T ss_pred HHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHH
Confidence 122334599999999999999999999999999998 7777777777778889999999999999999999999999
Q ss_pred cccHHHHHHHHHHhhc
Q psy2887 637 HGCKKSLSILLKKIHK 652 (899)
Q Consensus 637 ~~~~~~l~~~l~~~~~ 652 (899)
++. +++++...-+
T Consensus 312 ~~~---ie~~~~~~l~ 324 (363)
T 3hws_A 312 RSI---VEAALLDTMY 324 (363)
T ss_dssp HHH---HHHHHHHHHH
T ss_pred HHH---HHHHHHHHHH
Confidence 999 8887765544
No 11
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.5e-23 Score=225.61 Aligned_cols=177 Identities=23% Similarity=0.277 Sum_probs=145.2
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
+.+.++|||||||||||++|+++|+++ +.+++.++.+.+. ++|.|++++.++.+|..|... .|||+|
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~----------~~~f~~v~~s~l~--sk~vGese~~vr~lF~~Ar~~-aP~IIF 246 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHT----------DCKFIRVSGAELV--QKYIGEGSRMVRELFVMAREH-APSIIF 246 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHH----------TCEEEEEEGGGGS--CSSTTHHHHHHHHHHHHHHHT-CSEEEE
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhh----------CCCceEEEhHHhh--ccccchHHHHHHHHHHHHHHh-CCceEe
Confidence 456799999999999999999999999 9999999999988 789999999999999999854 599999
Q ss_pred EccccccccCCCCCc---hhh---HHHhhhhhhc----CCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCH
Q psy2887 91 IDELHTMIGTGKVEG---SID---AGNMLKPELS----RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDI 157 (899)
Q Consensus 91 iDEi~~l~~~~~~~~---~~~---~~~~l~~~l~----~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~ 157 (899)
|||+|.+++.+.... ... ..+.|+..|+ ...++||+|||.++ .+||||+| ||+. |+|+.|+.
T Consensus 247 iDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd-----~LDpAllRpGRfD~~I~i~lPd~ 321 (405)
T 4b4t_J 247 MDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLD-----ILDPALLRPGRIDRKIEFPPPSV 321 (405)
T ss_dssp EESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSS-----SSCHHHHSTTSSCCEEECCCCCH
T ss_pred eecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChh-----hCCHhHcCCCcCceEEEcCCcCH
Confidence 999999998764322 122 3344444443 56799999999999 99999999 9996 99999999
Q ss_pred HHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhh
Q psy2887 158 EETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 215 (899)
Q Consensus 158 ~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~ 215 (899)
++|.+||+.++++.....++ .+..+++.+.+|.+ +++..++.+|+..+
T Consensus 322 ~~R~~Il~~~~~~~~l~~dv-----dl~~lA~~t~G~SG-----ADi~~l~~eA~~~A 369 (405)
T 4b4t_J 322 AARAEILRIHSRKMNLTRGI-----NLRKVAEKMNGCSG-----ADVKGVCTEAGMYA 369 (405)
T ss_dssp HHHHHHHHHHHTTSBCCSSC-----CHHHHHHHCCSCCH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCccC-----CHHHHHHHCCCCCH-----HHHHHHHHHHHHHH
Confidence 99999999888775433332 36778888877655 78888888886554
No 12
>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle, hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A
Probab=99.90 E-value=9.6e-24 Score=229.48 Aligned_cols=226 Identities=22% Similarity=0.373 Sum_probs=152.0
Q ss_pred cccccccccccHHHHHHHHHHhhccC-------CccceeeccccCCCCceEehhHHHHHhcC-------CccEEEccCCh
Q psy2887 629 LIYGARDVHGCKKSLSILLKKIHKKS-------PEANFIFLGDLINKGPQSLDTLRMVYSMR-------NYAKIVLGNHE 694 (899)
Q Consensus 629 ~~~~~~di~~~~~~l~~~l~~~~~~~-------~~~~li~~GD~~d~g~~~~~~~~~l~~~~-------~~~~~v~GNHe 694 (899)
+.+.+|||||+++.|.++++.+++.+ ..+.++|+||++|||+.+.+|++++++++ .++++|+||||
T Consensus 72 ~i~vigDiHG~~~~l~~ll~~~~~~~~~~~~~~~~d~~v~lGD~vdrG~~s~evl~~l~~l~~~~~~~~~~v~~v~GNHE 151 (342)
T 2z72_A 72 KVVALSDVHGQYDVLLTLLKKQKIIDSDGNWAFGEGHMVMTGDIFDRGHQVNEVLWFMYQLDQQARDAGGMVHLLMGNHE 151 (342)
T ss_dssp EEEEECCCTTCHHHHHHHHHHTTSBCTTSCBCCTTCEEEECSCCSSSSSCHHHHHHHHHHHHHHHHHTTCEEEECCCHHH
T ss_pred CEEEEECCCCCHHHHHHHHHhcCCCcccccccCCCCEEEEECCCcCCCCCHHHHHHHHHHHHHHHhhCCCeEEEEecCCc
Confidence 45789999999999999999887643 35889999999999999999999998864 46899999999
Q ss_pred HhHHhHhhhcccCchhchHHHhhCC------cChHHHHHHHhcCCceEEeCCEEEEeccccccc-----chHHHHHHhHH
Q psy2887 695 IHLLDVLININKKSKLDTFDDILDA------PDKKKLVSWLRTQPLAIYYKKYLMIHAGVAKQW-----TAQQTIKLSHQ 763 (899)
Q Consensus 695 ~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~lp~~~~~~~~~~vHAg~~~~~-----~~~~~~~~~~~ 763 (899)
.+++....... ......+.+.+.. ....++.+||+++|+++..++++|||||+.|.| +.++...+.+.
T Consensus 152 ~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~lP~~~~~~~~~~vHgGl~p~~~~~~~~l~~i~~~~r~ 230 (342)
T 2z72_A 152 QMVLGGDLRYV-HQRYDIATTLINRPYNKLYSADTEIGQWLRSKNTIIKINDVLYMHGGISSEWISRELTLDKANALYRA 230 (342)
T ss_dssp HHHHHTCCTTS-CTTHHHHHHHTTSCGGGGGSTTBHHHHHHHTCCSEEEETTEEEESSCCCHHHHHTTCCHHHHHHHHHH
T ss_pred HHHhhCccccc-ccccchHHHHhcccHHHHHHHhHHHHHHHhhCCeEEEECCEEEEECCCChhhcccCCCHHHHHHHhhh
Confidence 99986321110 0011111111111 012468899999999999999999999999976 44433222221
Q ss_pred H----HHHhccccHHHHHHHhcCCCCCCCCcccccccccchhhHHHHHhhhccccccCCCCccccccccCCCCCCCCCCC
Q psy2887 764 V----EKILRTSYWKNLFFKLYNHNSINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYI 839 (899)
Q Consensus 764 ~----~~~l~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~ 839 (899)
. ...+.. ..+...+|.+.++.|.|+...... +.+.. ....
T Consensus 231 ~~~~~~~~~~~---~~~~~~lwsd~~~~w~R~~~~~~f-g~~~~--------------------------------~~fl 274 (342)
T 2z72_A 231 NVDASKKSLKA---DDLLNFLFFGNGPTWYRGYFSETF-TEAEL--------------------------------DTIL 274 (342)
T ss_dssp HTTSCHHHHHH---SHHHHHHHSTTSTTTCCGGGSTTC-CHHHH--------------------------------HHHH
T ss_pred hcccccccccc---CHHHHhccCCCCCCCcCCcccccC-ChHHH--------------------------------HHHH
Confidence 0 011110 112234566667778765411000 00000 0000
Q ss_pred CCccCCCCCCCCceEEEccCCCCCcc--cCCCeEEcccccccCCeeEEEEecCCceEEecc
Q psy2887 840 PWFDLPNRKTIDITVLFGHWSTLGLI--MKPNIICLDTGCVWGNKLTALCLEDRSIIQVNN 898 (899)
Q Consensus 840 ~w~~~~~~~~~~~~vv~GH~~~~~~~--~~~~~~~iDtG~v~gg~Lta~~~~~~~~~~v~~ 898 (899)
+| .+...||+|||++.+.. ..++++.|||||+|||+|+++++++++++++.+
T Consensus 275 ~~-------~~~~~IV~GHt~~~~~~~~~~~~~i~Idsg~~~gg~la~l~i~~~~~~~v~~ 328 (342)
T 2z72_A 275 QH-------FNVNHIVVGHTSQERVLGLFHNKVIAVDSSIKVGKSGELLLLENNRLIRGLY 328 (342)
T ss_dssp HH-------HTCSEEEECSSCCSSCEEETTTTEEECCCCGGGSSCCCEEEEETTEEEEECT
T ss_pred HH-------CCCcEEEECCCcccchhhhcCCCEEEEECCCCCCCcEEEEEEECCEEEEEec
Confidence 11 12468999999998743 467899999999999999999999999998863
No 13
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=5.8e-23 Score=222.89 Aligned_cols=177 Identities=25% Similarity=0.304 Sum_probs=144.5
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
+.+.+||||||||||||++|+++|+++ +.+++.++.+.+. ++|.|+.++.++.+|..|... .|||||
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~----------~~~fi~v~~s~l~--sk~vGesek~ir~lF~~Ar~~-aP~IIf 280 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQT----------SATFLRIVGSELI--QKYLGDGPRLCRQIFKVAGEN-APSIVF 280 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHH----------TCEEEEEESGGGC--CSSSSHHHHHHHHHHHHHHHT-CSEEEE
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHh----------CCCEEEEEHHHhh--hccCchHHHHHHHHHHHHHhc-CCcEEE
Confidence 456789999999999999999999999 9999999999988 789999999999999999854 599999
Q ss_pred EccccccccCCCCCc---hhhHH---Hhhhhhh----cCCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCH
Q psy2887 91 IDELHTMIGTGKVEG---SIDAG---NMLKPEL----SRGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDI 157 (899)
Q Consensus 91 iDEi~~l~~~~~~~~---~~~~~---~~l~~~l----~~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~ 157 (899)
|||+|.++..+...+ ..... +.|+..+ ..+.++||+|||.++ .+||||+| ||+. |+|+.|+.
T Consensus 281 iDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd-----~LDpALlRpGRfD~~I~v~lPd~ 355 (437)
T 4b4t_I 281 IDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIE-----TLDPALIRPGRIDRKILFENPDL 355 (437)
T ss_dssp EEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCST-----TCCTTSSCTTTEEEEECCCCCCH
T ss_pred EehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChh-----hcCHHHhcCCceeEEEEcCCcCH
Confidence 999999998764322 22223 3344443 356799999999999 99999999 9996 99999999
Q ss_pred HHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhh
Q psy2887 158 EETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 215 (899)
Q Consensus 158 ~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~ 215 (899)
++|.+||+.++.+.....++ .+..+++.+.+|.+ +++..++.+|+..+
T Consensus 356 ~~R~~Il~~~l~~~~l~~dv-----dl~~LA~~T~GfSG-----ADI~~l~~eA~~~A 403 (437)
T 4b4t_I 356 STKKKILGIHTSKMNLSEDV-----NLETLVTTKDDLSG-----ADIQAMCTEAGLLA 403 (437)
T ss_dssp HHHHHHHHHHHTTSCBCSCC-----CHHHHHHHCCSCCH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCcC-----CHHHHHHhCCCCCH-----HHHHHHHHHHHHHH
Confidence 99999999988775543333 35777888877655 77888888876554
No 14
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.2e-22 Score=220.66 Aligned_cols=177 Identities=25% Similarity=0.311 Sum_probs=145.0
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
+.+.+||||||||||||++|+++|+++ +.+++.++.+.+. ++|+|++++.++.+|..+... .|||||
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~----------~~~fi~vs~s~L~--sk~vGesek~ir~lF~~Ar~~-aP~IIf 307 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRT----------DATFIRVIGSELV--QKYVGEGARMVRELFEMARTK-KACIIF 307 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHH----------TCEEEEEEGGGGC--CCSSSHHHHHHHHHHHHHHHT-CSEEEE
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhcc----------CCCeEEEEhHHhh--cccCCHHHHHHHHHHHHHHhc-CCceEe
Confidence 567799999999999999999999999 9999999999988 789999999999999999854 599999
Q ss_pred EccccccccCCCCCch---hh---HHHhhhhhh----cCCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCH
Q psy2887 91 IDELHTMIGTGKVEGS---ID---AGNMLKPEL----SRGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDI 157 (899)
Q Consensus 91 iDEi~~l~~~~~~~~~---~~---~~~~l~~~l----~~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~ 157 (899)
|||+|.++..+...++ .. ..+.++..| ..+.++||+|||.++ .+||||+| ||+. |+|+.|+.
T Consensus 308 iDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd-----~LDpALlRpGRFD~~I~i~lPd~ 382 (467)
T 4b4t_H 308 FDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPN-----TLDPALLRPGRIDRKVEFSLPDL 382 (467)
T ss_dssp EECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTT-----SBCHHHHSTTTCCEEECCCCCCH
T ss_pred ecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcc-----cCChhhhccccccEEEEeCCcCH
Confidence 9999999987644322 12 223334444 356899999999999 99999999 9996 99999999
Q ss_pred HHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhh
Q psy2887 158 EETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 215 (899)
Q Consensus 158 ~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~ 215 (899)
++|.+||+.+++......++. +..+++.+.+|.+ +++..++.+|+..+
T Consensus 383 ~~R~~Ilk~~l~~~~l~~dvd-----l~~LA~~T~GfSG-----ADI~~l~~eAa~~A 430 (467)
T 4b4t_H 383 EGRANIFRIHSKSMSVERGIR-----WELISRLCPNSTG-----AELRSVCTEAGMFA 430 (467)
T ss_dssp HHHHHHHHHHHTTSCBCSSCC-----HHHHHHHCCSCCH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCCCC-----HHHHHHHCCCCCH-----HHHHHHHHHHHHHH
Confidence 999999998888755443332 5677888877655 77888888876554
No 15
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=6.2e-23 Score=226.51 Aligned_cols=177 Identities=20% Similarity=0.230 Sum_probs=144.5
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
+.+.++|||||||||||++|+++|+++ +.+++.++.+.+. ++|+|+.++.++.+|..+... .|||||
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~----------~~~f~~v~~s~l~--~~~vGese~~ir~lF~~A~~~-aP~Iif 279 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQT----------NATFLKLAAPQLV--QMYIGEGAKLVRDAFALAKEK-APTIIF 279 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH----------TCEEEEEEGGGGC--SSCSSHHHHHHHHHHHHHHHH-CSEEEE
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHh----------CCCEEEEehhhhh--hcccchHHHHHHHHHHHHHhc-CCeEEe
Confidence 456799999999999999999999999 9999999999988 789999999999999999855 599999
Q ss_pred EccccccccCCCCCch---hh---HHHhhhhhhc----CCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCH
Q psy2887 91 IDELHTMIGTGKVEGS---ID---AGNMLKPELS----RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDI 157 (899)
Q Consensus 91 iDEi~~l~~~~~~~~~---~~---~~~~l~~~l~----~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~ 157 (899)
|||+|.+++.+..... .. ..+.|+..|+ .+.++||+|||.++ .+||||+| ||+. |+|+.|+.
T Consensus 280 iDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~-----~LD~AllRpGRfD~~I~i~lPd~ 354 (434)
T 4b4t_M 280 IDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVD-----VLDPALLRSGRLDRKIEFPLPSE 354 (434)
T ss_dssp EECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCC-----CCCTTTCSTTSEEEEEECCCCCH
T ss_pred ecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCch-----hcCHhHhcCCceeEEEEeCCcCH
Confidence 9999999987644321 22 2334444443 46799999999999 99999998 9996 99999999
Q ss_pred HHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhh
Q psy2887 158 EETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 215 (899)
Q Consensus 158 ~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~ 215 (899)
++|.+||+.++.+.....++. +..+++.+.+|.+ +++..++.+|+..+
T Consensus 355 ~~R~~Il~~~~~~~~~~~dvd-----l~~lA~~t~G~sG-----ADi~~l~~eA~~~a 402 (434)
T 4b4t_M 355 DSRAQILQIHSRKMTTDDDIN-----WQELARSTDEFNG-----AQLKAVTVEAGMIA 402 (434)
T ss_dssp HHHHHHHHHHHHHSCBCSCCC-----HHHHHHHCSSCCH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCcCC-----HHHHHHhCCCCCH-----HHHHHHHHHHHHHH
Confidence 999999999888765443332 5677888877655 67778887776543
No 16
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=4.6e-22 Score=219.80 Aligned_cols=177 Identities=21% Similarity=0.286 Sum_probs=144.7
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
+.+.++|||||||||||++|+++|+++ +.+++.++.+.+. ++|.|++++.++.+|..+... .|||||
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~----------~~~~~~v~~s~l~--sk~~Gese~~ir~~F~~A~~~-~P~Iif 279 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATI----------GANFIFSPASGIV--DKYIGESARIIREMFAYAKEH-EPCIIF 279 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH----------TCEEEEEEGGGTC--CSSSSHHHHHHHHHHHHHHHS-CSEEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEehhhhc--cccchHHHHHHHHHHHHHHhc-CCceee
Confidence 556799999999999999999999999 9999999999888 789999999999999999854 599999
Q ss_pred EccccccccCCCCCch---hh---HHHhhhhhhc----CCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCH
Q psy2887 91 IDELHTMIGTGKVEGS---ID---AGNMLKPELS----RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDI 157 (899)
Q Consensus 91 iDEi~~l~~~~~~~~~---~~---~~~~l~~~l~----~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~ 157 (899)
|||+|.+++.+...+. .. ..+.|+..|+ .+.++||+|||.++ .+||||+| ||+. |+|+.|+.
T Consensus 280 iDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~-----~LDpAllRpGRfD~~I~i~lPd~ 354 (437)
T 4b4t_L 280 MDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPD-----TLDPALLRPGRLDRKVEIPLPNE 354 (437)
T ss_dssp EECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTT-----SSCTTTTSTTSEEEEECCCCCCH
T ss_pred eecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCch-----hhCHHHhCCCccceeeecCCcCH
Confidence 9999999987643321 12 3344555553 45799999999999 99999998 6996 99999999
Q ss_pred HHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhh
Q psy2887 158 EETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 215 (899)
Q Consensus 158 ~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~ 215 (899)
++|.+||+.++.......++ .+..+++.+.+|.+ +++..++.+|+..+
T Consensus 355 ~~R~~Il~~~~~~~~~~~d~-----dl~~lA~~t~G~sG-----ADi~~l~~eA~~~a 402 (437)
T 4b4t_L 355 AGRLEIFKIHTAKVKKTGEF-----DFEAAVKMSDGFNG-----ADIRNCATEAGFFA 402 (437)
T ss_dssp HHHHHHHHHHHHTSCBCSCC-----CHHHHHHTCCSCCH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCccc-----CHHHHHHhCCCCCH-----HHHHHHHHHHHHHH
Confidence 99999999988875543333 25777888877655 77888888876554
No 17
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=4.5e-22 Score=219.60 Aligned_cols=177 Identities=20% Similarity=0.226 Sum_probs=143.4
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
..+.++|||||||||||++|+++|+++ +.+++.++.+.+. ++|.|+.+..++.+|..|... .|||+|
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~----------~~~~~~v~~~~l~--~~~~Ge~e~~ir~lF~~A~~~-aP~Iif 270 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANST----------KAAFIRVNGSEFV--HKYLGEGPRMVRDVFRLAREN-APSIIF 270 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHH----------TCEEEEEEGGGTC--CSSCSHHHHHHHHHHHHHHHT-CSEEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEecchhh--ccccchhHHHHHHHHHHHHHc-CCCeee
Confidence 456789999999999999999999999 9999999999888 789999999999999999854 599999
Q ss_pred EccccccccCCCCC---ch---hhHHHhhhhhh----cCCceEEEEecChhHHHHhhhcCHHHHh--cccc-cccc-CCC
Q psy2887 91 IDELHTMIGTGKVE---GS---IDAGNMLKPEL----SRGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVE-EPD 156 (899)
Q Consensus 91 iDEi~~l~~~~~~~---~~---~~~~~~l~~~l----~~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~-~p~ 156 (899)
|||+|.++..+... +. ....+.|+..| ...+++||+|||.++ .+||||+| ||+. |+|+ .|+
T Consensus 271 iDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~-----~LD~AllRpGRfd~~I~~p~lPd 345 (428)
T 4b4t_K 271 IDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRAD-----TLDPALLRPGRLDRKIEFPSLRD 345 (428)
T ss_dssp EECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSS-----SCCHHHHSSSSEEEEEECCSSCC
T ss_pred chhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh-----hcChhhhcCCcceEEEEcCCCCC
Confidence 99999999876332 11 12334444444 356799999999999 99999999 9996 9996 799
Q ss_pred HHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhh
Q psy2887 157 IEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 215 (899)
Q Consensus 157 ~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~ 215 (899)
.++|..||+.++.+.....++ .+..++..+.+|.+ +++..++.+|+..+
T Consensus 346 ~~~R~~Il~~~~~~~~l~~~~-----dl~~lA~~t~G~sg-----adi~~l~~eA~~~a 394 (428)
T 4b4t_K 346 RRERRLIFGTIASKMSLAPEA-----DLDSLIIRNDSLSG-----AVIAAIMQEAGLRA 394 (428)
T ss_dssp HHHHHHHHHHHHHSSCBCTTC-----CHHHHHHHTTTCCH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCccc-----CHHHHHHHCCCCCH-----HHHHHHHHHHHHHH
Confidence 999999999988765433222 36778888877765 67778888776544
No 18
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.88 E-value=3.7e-22 Score=222.27 Aligned_cols=255 Identities=22% Similarity=0.361 Sum_probs=168.8
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHH----HHhhcCC-------C----------CCCCCceEEEEecCCCChHHHHHHH
Q psy2887 379 LLNIENLLCKRVVGQDEAISAVSNAI----RRSRSGL-------S----------DAKRPYGSFMFLGPTGVGKTELCKT 437 (899)
Q Consensus 379 l~~l~~~l~~~v~gq~~~~~~l~~~i----~~~~~~~-------~----------~~~~~~~~ill~GppGtGKT~lA~~ 437 (899)
+.++.+.|.+.|+||+.+++.|..++ .+.+.+. . ....+..++||+||||||||++|++
T Consensus 12 ~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~ 91 (376)
T 1um8_A 12 PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQT 91 (376)
T ss_dssp HHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHH
T ss_pred HHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHH
Confidence 34677788899999999999999887 3322211 0 0112234699999999999999999
Q ss_pred HHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHH-------HhCCCEEEEEccccccCHH-----
Q psy2887 438 LSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIV-------RRKPYSLILLDEIEKANSD----- 505 (899)
Q Consensus 438 la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~-------~~~~~~vl~lDEid~~~~~----- 505 (899)
+|+.+ +.+++.++++.+... +++|......+...+ ..+.++||||||++++++.
T Consensus 92 la~~l---~~~~~~~~~~~~~~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~ 157 (376)
T 1um8_A 92 LAKHL---DIPIAISDATSLTEA-----------GYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRS 157 (376)
T ss_dssp HHHHT---TCCEEEEEGGGCC-------------------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------
T ss_pred HHHHh---CCCEEEecchhhhhc-----------CcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCc
Confidence 99999 889999998876431 244544333344333 2346789999999999988
Q ss_pred ---------HHHHHHHhhcCCce--ecCCCce--------EecCCeEEEEecCCC-hhh-hhhhh-----c--Cc-----
Q psy2887 506 ---------VFNILLQILDDGRL--TDNRGRT--------INFRNTIIVMTSNLG-SDK-IKEME-----K--GD----- 552 (899)
Q Consensus 506 ---------~~~~Ll~~le~g~~--~~~~g~~--------~~~~~~~iI~tsn~~-~~~-~~~~~-----~--~~----- 552 (899)
+++.|+++|+++.+ .+..+.. +..++.++|+++|.. .+. +...+ + ..
T Consensus 158 ~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~ 237 (376)
T 1um8_A 158 ITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKK 237 (376)
T ss_dssp ------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTT
T ss_pred eecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhcc
Confidence 99999999997753 3333333 445667777777731 111 10000 0 00
Q ss_pred -HHHHHH-HHH-HHHhhcCChhHhhccCeEEEecCCCHHHHHHHHH----HHHHHHHHHHHhcCcceeecHHHHHHHHhc
Q psy2887 553 -KEIIKL-AVM-NEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN----IQLNILKNKLLKMNMDLKISKAALKKISNI 625 (899)
Q Consensus 553 -~~~~~~-~~~-~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~----~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~ 625 (899)
...+.. ... +.....|.|+|++||+.++.|+|++.+++.+|+. ..+.++...+...+..+.++++++++|++.
T Consensus 238 ~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~ 317 (376)
T 1um8_A 238 EQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQL 317 (376)
T ss_dssp TTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHH
T ss_pred chhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHH
Confidence 000000 000 1123468999999999999999999999999998 466666666666677789999999999998
Q ss_pred ccCcccccccccccHHHHHHHHHHh
Q psy2887 626 GFDLIYGARDVHGCKKSLSILLKKI 650 (899)
Q Consensus 626 ~~~~~~~~~di~~~~~~l~~~l~~~ 650 (899)
+|++.+++|.+.+. +++++...
T Consensus 318 ~~~~~~~~R~L~~~---le~~~~~~ 339 (376)
T 1um8_A 318 ALERKTGARGLRAI---IEDFCLDI 339 (376)
T ss_dssp HHHTTCTGGGHHHH---HHHHHHHH
T ss_pred hcccccCcHHHHHH---HHHHHHHH
Confidence 88878899999888 77766543
No 19
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.87 E-value=7.9e-22 Score=211.67 Aligned_cols=227 Identities=16% Similarity=0.237 Sum_probs=174.4
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhcc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 467 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (899)
..++|++.++..+...+..... ...++||+||||||||++|++|++.+...+.+|+.++|+.+......+.++
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~-------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lf 74 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP-------SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELF 74 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS-------TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHT
T ss_pred CCcEECCHHHHHHHHHHHHHhC-------CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhc
Confidence 4688999999999988877541 112699999999999999999999887778899999999987766667888
Q ss_pred CCCCC-cccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhh
Q psy2887 468 GAPPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 546 (899)
Q Consensus 468 g~~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~ 546 (899)
|...| +.|.... ....+..+.+++||||||+.+++..|..|+.+|+++.+....+......++.||+|||.......
T Consensus 75 g~~~g~~tg~~~~--~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v 152 (304)
T 1ojl_A 75 GHEKGAFTGADKR--REGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEV 152 (304)
T ss_dssp CCCSSCCC---CC--CCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHH
T ss_pred CccccccCchhhh--hcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHH
Confidence 87655 3333221 22334445568999999999999999999999999887655544444567899999998765433
Q ss_pred hhhcCcHHHHHHHHHHHHhhcCChhHhhccCe-EEEecCCC--HHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHH
Q psy2887 547 EMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLN--RKNILSIANIQLNILKNKLLKMNMDLKISKAALKKIS 623 (899)
Q Consensus 547 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~--~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~ 623 (899)
. .+.|+++|++||+. .|.++|+. .+|+..++..++.++....... ...+++++++.|.
T Consensus 153 ~-----------------~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~--~~~~s~~a~~~L~ 213 (304)
T 1ojl_A 153 S-----------------AGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKV--VKGFTPQAMDLLI 213 (304)
T ss_dssp H-----------------HTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCC--CCCBCHHHHHHHH
T ss_pred H-----------------hCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccC--ccCCCHHHHHHHH
Confidence 3 45799999999954 58899998 6899999999987765544322 2578999999999
Q ss_pred hcccCcccccccccccHHHHHHHH
Q psy2887 624 NIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 624 ~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
. |.|+.+++.+.+. +++++
T Consensus 214 ~--~~wpGnvReL~~~---l~~~~ 232 (304)
T 1ojl_A 214 H--YDWPGNIRELENA---IERAV 232 (304)
T ss_dssp H--CCCSSHHHHHHHH---HHHHH
T ss_pred c--CCCCCCHHHHHHH---HHHHH
Confidence 8 7788888887777 66555
No 20
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.87 E-value=2e-22 Score=233.26 Aligned_cols=273 Identities=20% Similarity=0.306 Sum_probs=182.4
Q ss_pred HHHHHHHHhhhhcccCCCccccccccccCcChHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHhhccCCChHHHHHHHH
Q psy2887 322 KLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVS 401 (899)
Q Consensus 322 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~v~gq~~~~~~l~ 401 (899)
..++++++++. +++.+++.. .+...+.+++++||.+.... ...+.++.+.|.++++|++.+++.+.
T Consensus 29 ~~~~el~~l~~----~~~~~~e~~---------~~~~~l~~~~~lp~~~~~~~-~~~~~~~~~~l~~di~G~~~vk~~i~ 94 (543)
T 3m6a_A 29 TALKELNRYEK----IPSSSAESS---------VIRNYIDWLVALPWTDETDD-KLDLKEAGRLLDEEHHGLEKVKERIL 94 (543)
T ss_dssp HHHHHHHSSCC----CSSSCTTTT---------HHHHHHHHHHHSCSSCCCCC-CCCTTTGGGTHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHhc----CCCCCchHh---------HHHHHHHHHhcCCCCccccc-cccHHHHHHHHHHHhccHHHHHHHHH
Confidence 35566666654 233333333 34455556888998776543 22344566778889999999999998
Q ss_pred HHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccch
Q psy2887 402 NAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGY 481 (899)
Q Consensus 402 ~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~ 481 (899)
..+......... +..+++|+||||||||++|++||..+ +.++..++++.+.. .+.++|....|+|...+.
T Consensus 95 ~~~~l~~~~~~~---~g~~vll~Gp~GtGKTtlar~ia~~l---~~~~~~i~~~~~~~---~~~~~g~~~~~ig~~~~~- 164 (543)
T 3m6a_A 95 EYLAVQKLTKSL---KGPILCLAGPPGVGKTSLAKSIAKSL---GRKFVRISLGGVRD---ESEIRGHRRTYVGAMPGR- 164 (543)
T ss_dssp HHHHHHHHSSSC---CSCEEEEESSSSSSHHHHHHHHHHHH---TCEEEEECCCC-----------------------C-
T ss_pred HHHHHHHhcccC---CCCEEEEECCCCCCHHHHHHHHHHhc---CCCeEEEEecccch---hhhhhhHHHHHhccCchH-
Confidence 776554433322 22379999999999999999999999 78999999887654 334556555567765553
Q ss_pred hhHHHHhC--CCEEEEEccccccCHH----HHHHHHHhhcCCc---eecC-CCceEecCCeEEEEecCCChhhhhhhhcC
Q psy2887 482 LTEIVRRK--PYSLILLDEIEKANSD----VFNILLQILDDGR---LTDN-RGRTINFRNTIIVMTSNLGSDKIKEMEKG 551 (899)
Q Consensus 482 l~~~~~~~--~~~vl~lDEid~~~~~----~~~~Ll~~le~g~---~~~~-~g~~~~~~~~~iI~tsn~~~~~~~~~~~~ 551 (899)
+...+..+ ..+|||||||+++++. .++.|+++|+.++ +.+. .+..+++.+++||+|||...
T Consensus 165 ~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~--------- 235 (543)
T 3m6a_A 165 IIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLA--------- 235 (543)
T ss_dssp HHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTT---------
T ss_pred HHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccc---------
Confidence 33333333 4569999999999987 5699999998754 3332 35667778999999999643
Q ss_pred cHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCc---ceeecHHHHHHHHhcccC
Q psy2887 552 DKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNM---DLKISKAALKKISNIGFD 628 (899)
Q Consensus 552 ~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~---~~~~~~~~~~~L~~~~~~ 628 (899)
.++|+|++|| .+|.|++|+.++..+|+..++ +.+.+...++ .+.++++++..++. .|+
T Consensus 236 ---------------~l~~aL~~R~-~vi~~~~~~~~e~~~Il~~~l--~~~~~~~~~~~~~~i~i~~~~l~~l~~-~~~ 296 (543)
T 3m6a_A 236 ---------------TIPGPLRDRM-EIINIAGYTEIEKLEIVKDHL--LPKQIKEHGLKKSNLQLRDQAILDIIR-YYT 296 (543)
T ss_dssp ---------------TSCHHHHHHE-EEEECCCCCHHHHHHHHHHTH--HHHHHHHTTCCGGGCEECHHHHHHHHH-HHC
T ss_pred ---------------cCCHHHHhhc-ceeeeCCCCHHHHHHHHHHHH--HHHHHHHcCCCcccccCCHHHHHHHHH-hCC
Confidence 4789999999 689999999999999999887 3333344443 57899999999887 788
Q ss_pred cccccccccccHHHHHHHHHH
Q psy2887 629 LIYGARDVHGCKKSLSILLKK 649 (899)
Q Consensus 629 ~~~~~~di~~~~~~l~~~l~~ 649 (899)
++.++|.+.+. +++++..
T Consensus 297 ~~~~vR~L~~~---i~~~~~~ 314 (543)
T 3m6a_A 297 REAGVRSLERQ---LAAICRK 314 (543)
T ss_dssp CCSSSHHHHHH---HHHHHHH
T ss_pred hhhchhHHHHH---HHHHHHH
Confidence 99999999888 5555543
No 21
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.86 E-value=5.5e-21 Score=207.31 Aligned_cols=232 Identities=22% Similarity=0.404 Sum_probs=169.1
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHHh--hcCCCC---CCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecc
Q psy2887 380 LNIENLLCKRVVGQDEAISAVSNAIRRS--RSGLSD---AKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDM 454 (899)
Q Consensus 380 ~~l~~~l~~~v~gq~~~~~~l~~~i~~~--~~~~~~---~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~ 454 (899)
.++...+.+.++|++.+++.+..++... +.++.. +..+..++||+||||||||++|+++|+.+ +.+++.+++
T Consensus 7 ~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~ 83 (310)
T 1ofh_A 7 REIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEA 83 (310)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEG
T ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcc
Confidence 4566778899999999999999888752 111110 00112369999999999999999999999 789999999
Q ss_pred cccccccchhhccCCCCCcccccccchhhHHHHh--------CCCEEEEEccccccCHHH------------HHHHHHhh
Q psy2887 455 SEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRR--------KPYSLILLDEIEKANSDV------------FNILLQIL 514 (899)
Q Consensus 455 ~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~--------~~~~vl~lDEid~~~~~~------------~~~Ll~~l 514 (899)
+.+... +|+|......+...... .+++||||||+|++++.. ++.|+++|
T Consensus 84 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~l 152 (310)
T 1ofh_A 84 TKFTEV-----------GYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLV 152 (310)
T ss_dssp GGGSSC-----------CSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHH
T ss_pred hhcccC-----------CccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHh
Confidence 887542 35554433333333221 236799999999998764 89999999
Q ss_pred cCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHH
Q psy2887 515 DDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIA 594 (899)
Q Consensus 515 e~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~ 594 (899)
+++.+....+ ..+..+++||+++|..... ...++|+|++||+.++.|+|++.+++.+|+
T Consensus 153 e~~~~~~~~~-~~~~~~~~~i~~~~~~~~~--------------------~~~l~~~l~~R~~~~i~~~~~~~~~~~~il 211 (310)
T 1ofh_A 153 EGSTVSTKHG-MVKTDHILFIASGAFQVAR--------------------PSDLIPELQGRLPIRVELTALSAADFERIL 211 (310)
T ss_dssp HCCEEEETTE-EEECTTCEEEEEECCSSSC--------------------GGGSCHHHHHTCCEEEECCCCCHHHHHHHH
T ss_pred cCCeEecccc-cccCCcEEEEEcCCcccCC--------------------cccCCHHHHhhCCceEEcCCcCHHHHHHHH
Confidence 9877665544 4566788899987643221 234789999999988999999999999999
Q ss_pred H----HHHHHHHHHHHhcCcceeecHHHHHHHHhcccCc-----ccccccccccHHHHHHHHHH
Q psy2887 595 N----IQLNILKNKLLKMNMDLKISKAALKKISNIGFDL-----IYGARDVHGCKKSLSILLKK 649 (899)
Q Consensus 595 ~----~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-----~~~~~di~~~~~~l~~~l~~ 649 (899)
. ..+.++...+...+..+.++++++++|++..+.. .+++|.+.+. +++++..
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~---l~~~~~~ 272 (310)
T 1ofh_A 212 TEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTV---MERLMDK 272 (310)
T ss_dssp HSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHH---HHHHSHH
T ss_pred HhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHH---HHHHHHh
Confidence 8 4555565666666777899999999999865532 4566666665 6666543
No 22
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.86 E-value=1e-20 Score=209.20 Aligned_cols=248 Identities=21% Similarity=0.327 Sum_probs=174.8
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHHh----hc--CCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEec
Q psy2887 380 LNIENLLCKRVVGQDEAISAVSNAIRRS----RS--GLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRID 453 (899)
Q Consensus 380 ~~l~~~l~~~v~gq~~~~~~l~~~i~~~----~~--~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~ 453 (899)
.++.+.|.+.|+||+++++.+..++... .. ++.. ..+..++||+||||||||++|+++|+.+ +.+|+.++
T Consensus 7 ~~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~-~~~~~~iLl~GppGtGKT~lar~lA~~l---~~~~~~v~ 82 (444)
T 1g41_A 7 REIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRH-EVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVE 82 (444)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTT-TCCCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEE
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhcccccccc-ccCCceEEEEcCCCCCHHHHHHHHHHHc---CCCceeec
Confidence 3567788899999999999998888442 11 1111 1123479999999999999999999999 88999999
Q ss_pred ccccccc-----cc---hhhccC--------------------------------CCCCc-----c--------------
Q psy2887 454 MSEFIEK-----HS---ISRLIG--------------------------------APPGY-----I-------------- 474 (899)
Q Consensus 454 ~~~~~~~-----~~---~~~l~g--------------------------------~~~~~-----~-------------- 474 (899)
++.+... .. +..++. ...+. +
T Consensus 83 ~~~~~~~g~vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~a 162 (444)
T 1g41_A 83 ATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKK 162 (444)
T ss_dssp GGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------------
T ss_pred chhhcccceeeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHH
Confidence 8776542 10 000000 00000 0
Q ss_pred -----------------------------cccc-----------------------------------c-------chhh
Q psy2887 475 -----------------------------GYEE-----------------------------------G-------GYLT 483 (899)
Q Consensus 475 -----------------------------g~~~-----------------------------------~-------~~l~ 483 (899)
|..+ . ....
T Consensus 163 L~rggr~D~~i~i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~ 242 (444)
T 1g41_A 163 LREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQ 242 (444)
T ss_dssp ---------------------------------------------------------------CCGGGSCSSCCHHHHHH
T ss_pred HHcCCCcceEEEEcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHH
Confidence 0000 0 0011
Q ss_pred HHHHhC-CCEEEEEccccccCH------------HHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhc
Q psy2887 484 EIVRRK-PYSLILLDEIEKANS------------DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEK 550 (899)
Q Consensus 484 ~~~~~~-~~~vl~lDEid~~~~------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~ 550 (899)
+++..+ +++||++||||+++. .+|+.||++||........ ..++.++++||+|+......
T Consensus 243 ~ai~~ae~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~-~~~d~~~ilfI~~gaf~~~~------ 315 (444)
T 1g41_A 243 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKH-GMVKTDHILFIASGAFQVAR------ 315 (444)
T ss_dssp HHHHHHHHHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETT-EEEECTTCEEEEEECCSSCC------
T ss_pred HHHHHhccCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhccccccccc-ceecCCcEEEEeccccccCC------
Confidence 222333 567999999999974 3899999999976655533 57889999999998432110
Q ss_pred CcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHH----HHHHHHHHHHHhcCcceeecHHHHHHHHhcc
Q psy2887 551 GDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN----IQLNILKNKLLKMNMDLKISKAALKKISNIG 626 (899)
Q Consensus 551 ~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~----~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 626 (899)
...+.|+|++||+.+|.|++|+.+++.+|+. ..+.++...+...++.+.++++|+..+++.+
T Consensus 316 --------------~~dlipel~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a 381 (444)
T 1g41_A 316 --------------PSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAA 381 (444)
T ss_dssp --------------GGGSCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHH
T ss_pred --------------hhhcchHHhcccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHH
Confidence 0125689999999999999999999999994 3556667777778899999999999999864
Q ss_pred -----cCcccccccccccHHHHHHHHHHhhccCC
Q psy2887 627 -----FDLIYGARDVHGCKKSLSILLKKIHKKSP 655 (899)
Q Consensus 627 -----~~~~~~~~di~~~~~~l~~~l~~~~~~~~ 655 (899)
|.+..|+|.+++. +++++.++.|.-+
T Consensus 382 ~~~~~~t~~~GaR~L~~~---ie~~~~~~~~~~~ 412 (444)
T 1g41_A 382 FRVNEKTENIGARRLHTV---MERLMDKISFSAS 412 (444)
T ss_dssp HHHHHHSCCCGGGHHHHH---HHHHHHHHHHHGG
T ss_pred HHhccCCccCCchHHHHH---HHHHHHHHHhhcc
Confidence 4588999999999 8888888877543
No 23
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.85 E-value=8.9e-21 Score=200.47 Aligned_cols=226 Identities=16% Similarity=0.239 Sum_probs=164.6
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhcc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 467 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (899)
..++|++.++..+...+...... ..++||+||||||||++|+++++.+...+.+++.++|+.+......+.++
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~-------~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 78 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPL-------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELF 78 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTS-------CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHH
T ss_pred ccceeCCHHHHHHHHHHHHHhCC-------CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhc
Confidence 45789999999998888765421 12699999999999999999999986667899999999986655556677
Q ss_pred CCCCC-cccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhh
Q psy2887 468 GAPPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 546 (899)
Q Consensus 468 g~~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~ 546 (899)
|...+ +.|.... ....+..+.+++||||||+.+++.+|+.|+++|+++.+....+......++.+|+|||.+...+.
T Consensus 79 g~~~~~~~g~~~~--~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~ 156 (265)
T 2bjv_A 79 GHEAGAFTGAQKR--HPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMV 156 (265)
T ss_dssp CCC---------C--CCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHH
T ss_pred CCccccccccccc--ccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHH
Confidence 76543 3332221 12334445678999999999999999999999999887655544444567899999998765433
Q ss_pred hhhcCcHHHHHHHHHHHHhhcCChhHhhccC-eEEEecCCCH--HHHHHHHHHHHHHHHHHHHhcCcc--eeecHHHHHH
Q psy2887 547 EMEKGDKEIIKLAVMNEVKIYFRPEFINRID-DIIVFRYLNR--KNILSIANIQLNILKNKLLKMNMD--LKISKAALKK 621 (899)
Q Consensus 547 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~-~~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~--~~~~~~~~~~ 621 (899)
. .+.|+++|++||+ ..+.++|++. +++..++..++.++... .+.. ..+++++++.
T Consensus 157 ~-----------------~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~---~~~~~~~~~~~~a~~~ 216 (265)
T 2bjv_A 157 N-----------------EGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCRE---IKLPLFPGFTERARET 216 (265)
T ss_dssp H-----------------HTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHH---TTCSSCCCBCHHHHHH
T ss_pred H-----------------cCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHH---hCCCcccCcCHHHHHH
Confidence 2 3568999999996 4788999986 78888888888765443 2332 3789999999
Q ss_pred HHhcccCcccccccccccHHHHHHHH
Q psy2887 622 ISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 622 L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
|.. |.|+.+++++.+. +++++
T Consensus 217 L~~--~~~~gn~reL~~~---l~~~~ 237 (265)
T 2bjv_A 217 LLN--YRWPGNIRELKNV---VERSV 237 (265)
T ss_dssp HHH--SCCTTHHHHHHHH---HHHHH
T ss_pred HHh--CCCCCCHHHHHHH---HHHHH
Confidence 987 6777778887777 55554
No 24
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.4e-20 Score=204.26 Aligned_cols=189 Identities=28% Similarity=0.378 Sum_probs=145.4
Q ss_pred hccCCChHHHHHHHHHHHHHh--------hcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccc
Q psy2887 387 CKRVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 458 (899)
Q Consensus 387 ~~~v~gq~~~~~~l~~~i~~~--------~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~ 458 (899)
..+|.|.+++++.|.+++... ..|+..|+ .+|||||||||||++|+++|..+ +.+|+.++++++.
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~pr----GvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~ 219 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPK----GVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGAELV 219 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCC----CEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGGGGS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCC----ceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhHHhh
Confidence 378999999999999888542 23554444 49999999999999999999999 9999999999987
Q ss_pred cccchhhccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccCH--------------HHHHHHHHhhcCCceecC
Q psy2887 459 EKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS--------------DVFNILLQILDDGRLTDN 522 (899)
Q Consensus 459 ~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~--------------~~~~~Ll~~le~g~~~~~ 522 (899)
+. |+|.++. +.+|..++...+|||||||+|.+.+ .+.+.||..|+.-.
T Consensus 220 sk------------~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~---- 283 (405)
T 4b4t_J 220 QK------------YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE---- 283 (405)
T ss_dssp CS------------STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT----
T ss_pred cc------------ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC----
Confidence 65 7777766 6788889999999999999997753 35678888887521
Q ss_pred CCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhh--ccCeEEEecCCCHHHHHHHHHHHHHH
Q psy2887 523 RGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNI 600 (899)
Q Consensus 523 ~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~~~~~~i~~~~l~~ 600 (899)
...+++||+|||.+.. ++|+|++ |||..|.|++|+.++..+|++.++.+
T Consensus 284 -----~~~~V~vIaATNrpd~------------------------LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~ 334 (405)
T 4b4t_J 284 -----TSKNIKIIMATNRLDI------------------------LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRK 334 (405)
T ss_dssp -----CCCCEEEEEEESCSSS------------------------SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT
T ss_pred -----CCCCeEEEeccCChhh------------------------CCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcC
Confidence 2357889999997543 7888885 99999999999999999998877632
Q ss_pred HHHHHHhcCcceeecHHHHHHHHhcccCccccccccccc
Q psy2887 601 LKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGC 639 (899)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~ 639 (899)
..+.-.++ ++.|++ ....|...||...
T Consensus 335 -------~~l~~dvd---l~~lA~--~t~G~SGADi~~l 361 (405)
T 4b4t_J 335 -------MNLTRGIN---LRKVAE--KMNGCSGADVKGV 361 (405)
T ss_dssp -------SBCCSSCC---HHHHHH--HCCSCCHHHHHHH
T ss_pred -------CCCCccCC---HHHHHH--HCCCCCHHHHHHH
Confidence 22211222 455555 2334666777765
No 25
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.84 E-value=1.5e-19 Score=200.65 Aligned_cols=226 Identities=17% Similarity=0.237 Sum_probs=180.0
Q ss_pred cCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccC
Q psy2887 389 RVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIG 468 (899)
Q Consensus 389 ~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g 468 (899)
.++|++..++.+...+..... ...+++++|++||||+++|++++........+|+.+||+.+......+.+||
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~-------~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg 210 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISC-------AECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFG 210 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTT-------CCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHC
T ss_pred hhhhccHHhhHHHHHHHHhcC-------CCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcC
Confidence 355666777777776665331 1125899999999999999999999877778999999999988777889999
Q ss_pred CCCC-cccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhh
Q psy2887 469 APPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKE 547 (899)
Q Consensus 469 ~~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~ 547 (899)
+..| +.|.... ..+.+..+.+++||||||+.+++.+|..|+++|++|.+...++......++.+|++||.+......
T Consensus 211 ~~~g~~tga~~~--~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~ 288 (387)
T 1ny5_A 211 YEKGAFTGAVSS--KEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVK 288 (387)
T ss_dssp BCTTSSTTCCSC--BCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHH
T ss_pred CCCCCCCCcccc--cCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHH
Confidence 8765 3343222 234566677899999999999999999999999999988766666666789999999998775544
Q ss_pred hhcCcHHHHHHHHHHHHhhcCChhHhhccCe-EEEecCCCH--HHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHh
Q psy2887 548 MEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKISN 624 (899)
Q Consensus 548 ~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 624 (899)
.+.|+++|++|++. .|.++|+.+ +|+..++..++.++..+.... ...+++++++.|..
T Consensus 289 -----------------~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~--~~~~~~~a~~~l~~ 349 (387)
T 1ny5_A 289 -----------------EGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKE--VEGFTKSAQELLLS 349 (387)
T ss_dssp -----------------TTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCC--CCEECHHHHHHHHH
T ss_pred -----------------cCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCC--CCCCCHHHHHHHHh
Confidence 57899999999964 678888875 899999999998776654322 24699999999998
Q ss_pred cccCcccccccccccHHHHHHHH
Q psy2887 625 IGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 625 ~~~~~~~~~~di~~~~~~l~~~l 647 (899)
|+|++++|.+.+. +++++
T Consensus 350 --~~wpGNvreL~~~---i~~~~ 367 (387)
T 1ny5_A 350 --YPWYGNVRELKNV---IERAV 367 (387)
T ss_dssp --SCCTTHHHHHHHH---HHHHH
T ss_pred --CCCCcHHHHHHHH---HHHHH
Confidence 8999999988888 66665
No 26
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.83 E-value=8.9e-21 Score=224.10 Aligned_cols=178 Identities=20% Similarity=0.322 Sum_probs=125.7
Q ss_pred CCCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEE
Q psy2887 10 FYFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIII 89 (899)
Q Consensus 10 ~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL 89 (899)
.+.+.++||+||||||||++|+++|.++ +.+++.++.+.+. ++|+|++++.++++|..|+.. .||||
T Consensus 508 ~~~~~gvLl~GPPGtGKT~lAkaiA~e~----------~~~f~~v~~~~l~--s~~vGese~~vr~lF~~Ar~~-~P~Ii 574 (806)
T 3cf2_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISIKGPELL--TMWFGESEANVREIFDKARQA-APCVL 574 (806)
T ss_dssp CCCCSCCEEESSTTSSHHHHHHHHHHTT----------TCEEEECCHHHHH--TTTCSSCHHHHHHHHHHHHTT-CSEEE
T ss_pred CCCCceEEEecCCCCCchHHHHHHHHHh----------CCceEEeccchhh--ccccchHHHHHHHHHHHHHHc-CCcee
Confidence 4566789999999999999999999999 8999999999998 789999999999999999854 59999
Q ss_pred EEccccccccCCCCC------chhhHHHhhhhhhc----CCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCC
Q psy2887 90 FIDELHTMIGTGKVE------GSIDAGNMLKPELS----RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPD 156 (899)
Q Consensus 90 ~iDEi~~l~~~~~~~------~~~~~~~~l~~~l~----~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~ 156 (899)
||||+|.+++.+... ....+.+.|+..|+ ...++||+|||.++ .+|++++| ||+. |+++.|+
T Consensus 575 fiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~-----~lD~AllRpgRfd~~i~v~lPd 649 (806)
T 3cf2_A 575 FFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD-----IIDPAILRPGRLDQLIYIPLPD 649 (806)
T ss_dssp ECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSS-----SSCHHHHSTTTSCCEEEC----
T ss_pred echhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCch-----hCCHhHcCCCcceEEEEECCcC
Confidence 999999999876421 12345666777664 45799999999999 89999999 9996 9999999
Q ss_pred HHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhh
Q psy2887 157 IEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 215 (899)
Q Consensus 157 ~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~ 215 (899)
.++|.+||+.++++.....+ ..+..+++.+.+|.+ ++...++.+|+..+
T Consensus 650 ~~~R~~il~~~l~~~~~~~~-----~dl~~la~~t~g~SG-----adi~~l~~~A~~~a 698 (806)
T 3cf2_A 650 EKSRVAILKANLRKSPVAKD-----VDLEFLAKMTNGFSG-----ADLTEICQRACKLA 698 (806)
T ss_dssp -CHHHHTTTTTSSCC--CCC--------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCC-----CCHHHHHHhCCCCCH-----HHHHHHHHHHHHHH
Confidence 99999999998876543322 235677888877765 67778888776544
No 27
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=2.4e-20 Score=202.48 Aligned_cols=188 Identities=22% Similarity=0.361 Sum_probs=142.8
Q ss_pred ccCCChHHHHHHHHHHHHHh--------hcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 459 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~--------~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 459 (899)
.+|.|.+++++.|.+.+... ..|+..|+ .+|||||||||||++|+++|..+ +.+|+.++++++.+
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~pr----GvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPK----GVILYGAPGTGKTLLAKAVANQT---SATFLRIVGSELIQ 254 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCS----EEEEESSTTTTHHHHHHHHHHHH---TCEEEEEESGGGCC
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCC----CCceECCCCchHHHHHHHHHHHh---CCCEEEEEHHHhhh
Confidence 67899999999999988542 23443332 59999999999999999999999 99999999999876
Q ss_pred ccchhhccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccCH--------------HHHHHHHHhhcCCceecCC
Q psy2887 460 KHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS--------------DVFNILLQILDDGRLTDNR 523 (899)
Q Consensus 460 ~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~--------------~~~~~Ll~~le~g~~~~~~ 523 (899)
. |+|.++. +.+|..++...++||||||+|.+.. .+++.||..|+...
T Consensus 255 k------------~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~----- 317 (437)
T 4b4t_I 255 K------------YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD----- 317 (437)
T ss_dssp S------------SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC-----
T ss_pred c------------cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC-----
Confidence 5 7777765 6788888889999999999997643 35667777776411
Q ss_pred CceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhh--ccCeEEEecCCCHHHHHHHHHHHHHHH
Q psy2887 524 GRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNIL 601 (899)
Q Consensus 524 g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~~~~~~i~~~~l~~~ 601 (899)
...+++||+|||.... ++|+|++ |||..|.|+.++.++..+|++.++.+
T Consensus 318 ----~~~~ViVIaATNrpd~------------------------LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~- 368 (437)
T 4b4t_I 318 ----DRGDVKVIMATNKIET------------------------LDPALIRPGRIDRKILFENPDLSTKKKILGIHTSK- 368 (437)
T ss_dssp ----CSSSEEEEEEESCSTT------------------------CCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTT-
T ss_pred ----CCCCEEEEEeCCChhh------------------------cCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcC-
Confidence 2357889999997543 7888885 99999999999999999998877632
Q ss_pred HHHHHhcCcceeecHHHHHHHHhcccCccccccccccc
Q psy2887 602 KNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGC 639 (899)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~ 639 (899)
..+.-.++ ++.|++ ....|...||...
T Consensus 369 ------~~l~~dvd---l~~LA~--~T~GfSGADI~~l 395 (437)
T 4b4t_I 369 ------MNLSEDVN---LETLVT--TKDDLSGADIQAM 395 (437)
T ss_dssp ------SCBCSCCC---HHHHHH--HCCSCCHHHHHHH
T ss_pred ------CCCCCcCC---HHHHHH--hCCCCCHHHHHHH
Confidence 22211222 455555 2334666777765
No 28
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3
Probab=99.82 E-value=5.5e-21 Score=195.86 Aligned_cols=196 Identities=22% Similarity=0.308 Sum_probs=132.1
Q ss_pred CcccccccccccHHHHHHHHHHhhccCCccceeeccccCCCCceEehhHHHHHhcCCccEEEccCChHhHHhHhhhcccC
Q psy2887 628 DLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVLININKK 707 (899)
Q Consensus 628 ~~~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~~~~l~~~~~~~~~v~GNHe~~~l~~~~~~~~~ 707 (899)
.+.+.++|+||+++.|.++++.+++....+.+|++||++|+||.+.++++++.+. .+.+|+||||.+.+.+.......
T Consensus 13 ~~i~visDiHg~~~~l~~~l~~~~~~~~~d~~i~~GD~~~~g~~~~~~~~~l~~~--~~~~v~GNhd~~~~~~~~~~~~~ 90 (221)
T 1g5b_A 13 RNIWVVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLELITFP--WFRAVRGNHEQMMIDGLSERGNV 90 (221)
T ss_dssp SCEEEECCCTTCHHHHHHHHHHHTCCTTTCEEEECSCCSSSSSCHHHHHGGGGST--TEEECCCHHHHHHHHHHSTTCCC
T ss_pred ceEEEEEcCCCCHHHHHHHHHHccCCCCCCEEEEeCCccCCCCChHHHHHHHhcC--CEEEEccCcHHHHHhhhccCCcH
Confidence 3457789999999999999999887656789999999999999999999998653 58999999999988765321110
Q ss_pred -----chhchHHHh--hCCcChHHHHHHHhcCCceEEe----CCEEEEecccccccc-hHHHHHHhHHHHHHhccccHHH
Q psy2887 708 -----SKLDTFDDI--LDAPDKKKLVSWLRTQPLAIYY----KKYLMIHAGVAKQWT-AQQTIKLSHQVEKILRTSYWKN 775 (899)
Q Consensus 708 -----~~~~~~~~~--~~~~~~~~~~~~l~~lp~~~~~----~~~~~vHAg~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ 775 (899)
.+..++..+ ......+++.+||+++|..+.. .++++||||++|... +. .+.. +..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lP~~~~~~~~~~~i~~vHgg~~~~~~~~~--~~~~-----------~~~ 157 (221)
T 1g5b_A 91 NHWLLNGGGWFFNLDYDKEILAKALAHKADELPLIIELVSKDKKYVICHADYPFDEYEFG--KPVD-----------HQQ 157 (221)
T ss_dssp HHHHTTTGGGGGGSCHHHHHHHHHHHHHHTTCCSEEEEEETTEEEEECSSCCCSSBCCTT--CCCC-----------HHH
T ss_pred HHHHHcCCCchhhcCHHHHHHHHHHHHHHHhCCcEEEEEecCCeEEEEecCCChhhcccC--CCcc-----------ccc
Confidence 011111000 1111246789999999999865 479999999876321 00 0000 000
Q ss_pred HHHHhcCCCCCCCCcccccccccchhhHHHHHhhhccccccCCCCccccccccCCCCCCCCCCCCCccCCCCCCCCceEE
Q psy2887 776 LFFKLYNHNSINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRKTIDITVL 855 (899)
Q Consensus 776 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~vv 855 (899)
..|.+.. +... .+ .|. ....+...||
T Consensus 158 ----------~lw~~~~----------------------~~~~-------~~------------~~~---~~~~~~~~vv 183 (221)
T 1g5b_A 158 ----------VIWNRER----------------------ISNS-------QN------------GIV---KEIKGADTFI 183 (221)
T ss_dssp ----------HHHCCHH----------------------HHHH-------HT------------TCC---CCCBTSSEEE
T ss_pred ----------cccCchh----------------------hhhh-------cc------------ccC---CcccCCCEEE
Confidence 0122210 0000 00 000 0011345799
Q ss_pred EccCCCCCcccCCCeEEcccccccCCeeEEEEecCCc
Q psy2887 856 FGHWSTLGLIMKPNIICLDTGCVWGNKLTALCLEDRS 892 (899)
Q Consensus 856 ~GH~~~~~~~~~~~~~~iDtG~v~gg~Lta~~~~~~~ 892 (899)
||||++..+...+++++||+||++||+|||++++++.
T Consensus 184 ~GHth~~~~~~~~~~~~in~Gs~~gg~lt~~~l~~~~ 220 (221)
T 1g5b_A 184 FGHTPAVKPLKFANQMYIDTGAVFCGNLTLIQVQGAG 220 (221)
T ss_dssp ECSSCCSSCEEETTEEECCCCHHHHSCCCEEEEECC-
T ss_pred ECCCCCccceeeCCEEEEECCCCcCCceEEEEecCCC
Confidence 9999999988889999999999999999999998753
No 29
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.82 E-value=2.9e-19 Score=194.13 Aligned_cols=177 Identities=23% Similarity=0.336 Sum_probs=143.4
Q ss_pred CCCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEE
Q psy2887 10 FYFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIII 89 (899)
Q Consensus 10 ~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL 89 (899)
...+.++||+||||||||++|+++|+++ +.+++.+++..+. +.+.|+.+..++.+|..+... .|+||
T Consensus 48 ~~~~~~vLl~GppGtGKT~la~aia~~~----------~~~~~~v~~~~l~--~~~~g~~~~~~~~~f~~a~~~-~~~vl 114 (322)
T 3eie_A 48 RKPTSGILLYGPPGTGKSYLAKAVATEA----------NSTFFSVSSSDLV--SKWMGESEKLVKQLFAMAREN-KPSII 114 (322)
T ss_dssp CCCCCEEEEECSSSSCHHHHHHHHHHHH----------TCEEEEEEHHHHH--TTTGGGHHHHHHHHHHHHHHT-SSEEE
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHH----------CCCEEEEchHHHh--hcccchHHHHHHHHHHHHHhc-CCeEE
Confidence 3456789999999999999999999998 8899999998887 678899999999999998754 58999
Q ss_pred EEccccccccCCCC---CchhhHHHhhhhhh-----cCCceEEEEecChhHHHHhhhcCHHHHhcccc-ccccCCCHHHH
Q psy2887 90 FIDELHTMIGTGKV---EGSIDAGNMLKPEL-----SRGELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEET 160 (899)
Q Consensus 90 ~iDEi~~l~~~~~~---~~~~~~~~~l~~~l-----~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~-i~l~~p~~~e~ 160 (899)
||||+|.|...+.. .....+.+.++..+ ....+++|++||.++ .+++++++||+. +.++.|+.++|
T Consensus 115 ~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~-----~ld~al~~Rf~~~i~~~~p~~~~r 189 (322)
T 3eie_A 115 FIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW-----QLDSAIRRRFERRIYIPLPDLAAR 189 (322)
T ss_dssp EEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGG-----GSCHHHHHHCCEEEECCCCCHHHH
T ss_pred EechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChh-----hCCHHHHcccCeEEEeCCCCHHHH
Confidence 99999999875532 22233445555555 346799999999998 899999999985 89999999999
Q ss_pred HHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHH
Q psy2887 161 ISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAA 213 (899)
Q Consensus 161 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~ 213 (899)
.+|++.++.. ....+++..+..+++.+.+|.+ +++..++..|+.
T Consensus 190 ~~il~~~~~~----~~~~~~~~~l~~la~~t~g~sg-----~di~~l~~~a~~ 233 (322)
T 3eie_A 190 TTMFEINVGD----TPCVLTKEDYRTLGAMTEGYSG-----SDIAVVVKDALM 233 (322)
T ss_dssp HHHHHHHHTT----CCCCCCHHHHHHHHHTTTTCCH-----HHHHHHHHHHTT
T ss_pred HHHHHHHhcc----CCCCCCHHHHHHHHHHcCCCCH-----HHHHHHHHHHHH
Confidence 9999988775 4456789999999999887655 566666666653
No 30
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=4.7e-20 Score=203.58 Aligned_cols=189 Identities=20% Similarity=0.320 Sum_probs=142.2
Q ss_pred hccCCChHHHHHHHHHHHHHh--------hcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccc
Q psy2887 387 CKRVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 458 (899)
Q Consensus 387 ~~~v~gq~~~~~~l~~~i~~~--------~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~ 458 (899)
..+|.|.+.+++.|.+.+... ..|+..|+ .+|||||||||||++|+++|..+ +.+|+.++++++.
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~pr----GvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPK----GALMYGPPGTGKTLLARACAAQT---NATFLKLAAPQLV 252 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCC----EEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGC
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCC----eeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehhhhh
Confidence 378999999999998887442 23443332 59999999999999999999999 9999999999987
Q ss_pred cccchhhccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccCH--------------HHHHHHHHhhcCCceecC
Q psy2887 459 EKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS--------------DVFNILLQILDDGRLTDN 522 (899)
Q Consensus 459 ~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~--------------~~~~~Ll~~le~g~~~~~ 522 (899)
+. |+|.++. +.+|..++...+|||||||+|.+.+ .+.+.||+.|+.-.
T Consensus 253 ~~------------~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~---- 316 (434)
T 4b4t_M 253 QM------------YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS---- 316 (434)
T ss_dssp SS------------CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC----
T ss_pred hc------------ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC----
Confidence 65 7777665 6778888888899999999986521 24567888887521
Q ss_pred CCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhh--ccCeEEEecCCCHHHHHHHHHHHHHH
Q psy2887 523 RGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNI 600 (899)
Q Consensus 523 ~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~~~~~~i~~~~l~~ 600 (899)
...+++||+|||.+.. ++|+|++ |||..|.|+.|+.++..+|++.++.+
T Consensus 317 -----~~~~ViVIaaTNrp~~------------------------LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~ 367 (434)
T 4b4t_M 317 -----SDDRVKVLAATNRVDV------------------------LDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRK 367 (434)
T ss_dssp -----SSCSSEEEEECSSCCC------------------------CCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred -----CCCCEEEEEeCCCchh------------------------cCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcC
Confidence 1356789999997543 7888875 99999999999999999999877743
Q ss_pred HHHHHHhcCcceeecHHHHHHHHhcccCccccccccccc
Q psy2887 601 LKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGC 639 (899)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~ 639 (899)
....-.++ ++.|++ ....|..+||...
T Consensus 368 -------~~~~~dvd---l~~lA~--~t~G~sGADi~~l 394 (434)
T 4b4t_M 368 -------MTTDDDIN---WQELAR--STDEFNGAQLKAV 394 (434)
T ss_dssp -------SCBCSCCC---HHHHHH--HCSSCCHHHHHHH
T ss_pred -------CCCCCcCC---HHHHHH--hCCCCCHHHHHHH
Confidence 22111222 345555 2334666777765
No 31
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.4e-19 Score=198.49 Aligned_cols=188 Identities=22% Similarity=0.344 Sum_probs=142.4
Q ss_pred ccCCChHHHHHHHHHHHHH--------hhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRR--------SRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 459 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~--------~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 459 (899)
.+|.|.+++++.|.+.+.. ...|+..|+ .+|||||||||||++|+++|..+ +.+|+.++++++.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~ppr----GILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPK----GILLYGPPGTGKTLCARAVANRT---DATFIRVIGSELVQ 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCS----EEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGCC
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCC----ceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhHHhhc
Confidence 6789999999999888743 123544333 59999999999999999999999 99999999999876
Q ss_pred ccchhhccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccCH--------------HHHHHHHHhhcCCceecCC
Q psy2887 460 KHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS--------------DVFNILLQILDDGRLTDNR 523 (899)
Q Consensus 460 ~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~--------------~~~~~Ll~~le~g~~~~~~ 523 (899)
. |+|.++. +.+|..++...+|||||||+|.+.. .+++.||..|+...
T Consensus 282 k------------~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~----- 344 (467)
T 4b4t_H 282 K------------YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD----- 344 (467)
T ss_dssp C------------SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC-----
T ss_pred c------------cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC-----
Confidence 5 7777765 6788888889999999999997742 25667777777421
Q ss_pred CceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhh--ccCeEEEecCCCHHHHHHHHHHHHHHH
Q psy2887 524 GRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNIL 601 (899)
Q Consensus 524 g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~~~~~~i~~~~l~~~ 601 (899)
...++++|+|||.... ++|+|+. |||..|.|+.++.+++.+|++.++..
T Consensus 345 ----~~~~ViVIaATNrpd~------------------------LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~- 395 (467)
T 4b4t_H 345 ----PRGNIKVMFATNRPNT------------------------LDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKS- 395 (467)
T ss_dssp ----CTTTEEEEEECSCTTS------------------------BCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTT-
T ss_pred ----CCCcEEEEeCCCCccc------------------------CChhhhccccccEEEEeCCcCHHHHHHHHHHHhcC-
Confidence 2357889999997543 7888875 99999999999999999998877632
Q ss_pred HHHHHhcCcceeecHHHHHHHHhcccCccccccccccc
Q psy2887 602 KNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGC 639 (899)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~ 639 (899)
..+.-.++ ++.|++ ....|...||...
T Consensus 396 ------~~l~~dvd---l~~LA~--~T~GfSGADI~~l 422 (467)
T 4b4t_H 396 ------MSVERGIR---WELISR--LCPNSTGAELRSV 422 (467)
T ss_dssp ------SCBCSSCC---HHHHHH--HCCSCCHHHHHHH
T ss_pred ------CCCCCCCC---HHHHHH--HCCCCCHHHHHHH
Confidence 22222222 344554 2234566777765
No 32
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.81 E-value=1.8e-19 Score=198.35 Aligned_cols=225 Identities=16% Similarity=0.238 Sum_probs=178.9
Q ss_pred cCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccC
Q psy2887 389 RVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIG 468 (899)
Q Consensus 389 ~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g 468 (899)
.++|++..+..+...+...... ..+++++|++||||+.+|++++......+ .|+.+||+.+......+.+||
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~~-------~~~vli~GesGtGKe~lAr~ih~~s~r~~-~fv~vnc~~~~~~~~~~~lfg 201 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAKS-------KAPVLITGESGTGKEIVARLIHRYSGRKG-AFVDLNCASIPQELAESELFG 201 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHTS-------CSCEEEECCTTSSHHHHHHHHHHHHCCCS-CEEEEESSSSCTTTHHHHHHE
T ss_pred cccccchHHHHHHhhhhhhhcc-------chhheEEeCCCchHHHHHHHHHHhccccC-CcEEEEcccCChHHHHHHhcC
Confidence 4678888888887777655421 12599999999999999999999884443 499999999988877889999
Q ss_pred CCCC-cccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhh
Q psy2887 469 APPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKE 547 (899)
Q Consensus 469 ~~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~ 547 (899)
+..| +.|.... -...+..+.+++||||||+.+++..|..|+++|++|.+....+......++.+|++||.+......
T Consensus 202 ~~~g~~tga~~~--~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~ 279 (368)
T 3dzd_A 202 HEKGAFTGALTR--KKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIK 279 (368)
T ss_dssp ECSCSSSSCCCC--EECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHH
T ss_pred ccccccCCcccc--cCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHH
Confidence 8776 3333222 234455667789999999999999999999999999998766655556789999999987765444
Q ss_pred hhcCcHHHHHHHHHHHHhhcCChhHhhccCe-EEEecCCCH--HHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHh
Q psy2887 548 MEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKISN 624 (899)
Q Consensus 548 ~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 624 (899)
.+.|+++|++|++. .|.++|+.+ +|+..++..++.++..+.... ...+++++++.|..
T Consensus 280 -----------------~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~--~~~~~~~a~~~L~~ 340 (368)
T 3dzd_A 280 -----------------KGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKN--CFELSEETKEYLMK 340 (368)
T ss_dssp -----------------TTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCC--CCCBCHHHHHHHHT
T ss_pred -----------------cCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCC--CCCcCHHHHHHHHh
Confidence 56899999999975 588999987 899999999998877654332 26799999999998
Q ss_pred cccCcccccccccccHHHHHHHH
Q psy2887 625 IGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 625 ~~~~~~~~~~di~~~~~~l~~~l 647 (899)
|+|+.+++.+.+. +++++
T Consensus 341 --~~wpGNvreL~n~---i~~~~ 358 (368)
T 3dzd_A 341 --QEWKGNVRELKNL---IERAV 358 (368)
T ss_dssp --CCCTTHHHHHHHH---HHHHH
T ss_pred --CCCCcHHHHHHHH---HHHHH
Confidence 9999888888877 66665
No 33
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=2.3e-19 Score=198.23 Aligned_cols=188 Identities=23% Similarity=0.375 Sum_probs=143.4
Q ss_pred ccCCChHHHHHHHHHHHHHh--------hcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 459 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~--------~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 459 (899)
.+|.|.+++++.|.+.+... ..|+..|+ .+|||||||||||++|+++|..+ +.+|+.++++++.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~pr----GvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPK----GVLLYGPPGTGKTLLAKAVAATI---GANFIFSPASGIVD 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCC----EEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGTCC
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCC----eEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehhhhcc
Confidence 67899999999999888542 23443333 59999999999999999999999 99999999999876
Q ss_pred ccchhhccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccCH--------------HHHHHHHHhhcCCceecCC
Q psy2887 460 KHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS--------------DVFNILLQILDDGRLTDNR 523 (899)
Q Consensus 460 ~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~--------------~~~~~Ll~~le~g~~~~~~ 523 (899)
. |+|.++. +.++..++...+|||||||+|.+.+ .+.+.||..|+.-.
T Consensus 254 k------------~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~----- 316 (437)
T 4b4t_L 254 K------------YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD----- 316 (437)
T ss_dssp S------------SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS-----
T ss_pred c------------cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc-----
Confidence 5 7776665 6778888889999999999997642 35677888888521
Q ss_pred CceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHh--hccCeEEEecCCCHHHHHHHHHHHHHHH
Q psy2887 524 GRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQLNIL 601 (899)
Q Consensus 524 g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~~~~~~i~~~~l~~~ 601 (899)
...+++||+|||.+.. ++|+|+ +|||..|.|+.|+.++..+|++.++.+
T Consensus 317 ----~~~~vivI~ATNrp~~------------------------LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~- 367 (437)
T 4b4t_L 317 ----NLGQTKIIMATNRPDT------------------------LDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAK- 367 (437)
T ss_dssp ----CTTSSEEEEEESSTTS------------------------SCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHT-
T ss_pred ----CCCCeEEEEecCCchh------------------------hCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcC-
Confidence 2357889999997543 778887 569999999999999999999877733
Q ss_pred HHHHHhcCcceeecHHHHHHHHhcccCccccccccccc
Q psy2887 602 KNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGC 639 (899)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~ 639 (899)
....-.++ ++.|++ ....|...||...
T Consensus 368 ------~~~~~d~d---l~~lA~--~t~G~sGADi~~l 394 (437)
T 4b4t_L 368 ------VKKTGEFD---FEAAVK--MSDGFNGADIRNC 394 (437)
T ss_dssp ------SCBCSCCC---HHHHHH--TCCSCCHHHHHHH
T ss_pred ------CCCCcccC---HHHHHH--hCCCCCHHHHHHH
Confidence 22111222 455555 3344667787775
No 34
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.81 E-value=5.5e-19 Score=191.34 Aligned_cols=178 Identities=20% Similarity=0.302 Sum_probs=142.5
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
..+.++||+||||||||++|+++|+.+ .+.+++.+++..+. +.+.|+.+..++.+|..+.. ..|+|||
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~---------~~~~~~~i~~~~l~--~~~~g~~~~~~~~lf~~a~~-~~~~vl~ 110 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA---------NNSTFFSISSSDLV--SKWLGESEKLVKNLFQLARE-NKPSIIF 110 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT---------TSCEEEEEECCSSC--CSSCCSCHHHHHHHHHHHHH-TSSEEEE
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc---------CCCcEEEEEhHHHH--hhhhhHHHHHHHHHHHHHHh-cCCcEEE
Confidence 445789999999999999999999986 15678888887776 56889999999999998874 4589999
Q ss_pred EccccccccCCCCCch---hhHHHhhhhhhc-----CCceEEEEecChhHHHHhhhcCHHHHhcccc-ccccCCCHHHHH
Q psy2887 91 IDELHTMIGTGKVEGS---IDAGNMLKPELS-----RGELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETI 161 (899)
Q Consensus 91 iDEi~~l~~~~~~~~~---~~~~~~l~~~l~-----~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~-i~l~~p~~~e~~ 161 (899)
|||+|.+.+.+..... ..+.+.++..++ ...+++|++||.++ .++++++|||+. +.++.|+.++|.
T Consensus 111 iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~-----~ld~al~rRf~~~i~i~~P~~~~r~ 185 (322)
T 1xwi_A 111 IDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW-----VLDSAIRRRFEKRIYIPLPEPHARA 185 (322)
T ss_dssp EETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT-----TSCHHHHHTCCEEEECCCCCHHHHH
T ss_pred eecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc-----cCCHHHHhhcCeEEEeCCcCHHHHH
Confidence 9999999876544322 234444555542 46799999999998 899999999975 999999999999
Q ss_pred HHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 162 SILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 162 ~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
+|++.++.. ....+++..+..+++.+.+|.+ +++..++..|+..
T Consensus 186 ~il~~~l~~----~~~~l~~~~l~~la~~t~G~sg-----adl~~l~~~A~~~ 229 (322)
T 1xwi_A 186 AMFKLHLGT----TQNSLTEADFRELGRKTDGYSG-----ADISIIVRDALMQ 229 (322)
T ss_dssp HHHHHHHTT----CCBCCCHHHHHHHHHTCTTCCH-----HHHHHHHHHHHTH
T ss_pred HHHHHHHhc----CCCCCCHHHHHHHHHHcCCCCH-----HHHHHHHHHHHHH
Confidence 999988875 3345788999999999888765 5666777776643
No 35
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.80 E-value=7.9e-19 Score=192.81 Aligned_cols=179 Identities=22% Similarity=0.315 Sum_probs=139.7
Q ss_pred CCCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEE
Q psy2887 10 FYFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIII 89 (899)
Q Consensus 10 ~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL 89 (899)
.+.+.++||+||||||||++|+++|+.+ +.+++.+++..+. ..+.|+.+..++.+|..+.. ..|+||
T Consensus 81 ~~~~~~iLL~GppGtGKT~la~ala~~~----------~~~~~~v~~~~l~--~~~~g~~~~~~~~~f~~a~~-~~~~vl 147 (355)
T 2qp9_X 81 RKPTSGILLYGPPGTGKSYLAKAVATEA----------NSTFFSVSSSDLV--SKWMGESEKLVKQLFAMARE-NKPSII 147 (355)
T ss_dssp CCCCCCEEEECSTTSCHHHHHHHHHHHH----------TCEEEEEEHHHHH--SCC---CHHHHHHHHHHHHH-TSSEEE
T ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh----------CCCEEEeeHHHHh--hhhcchHHHHHHHHHHHHHH-cCCeEE
Confidence 3456789999999999999999999999 8899999998887 56788899999999998874 458999
Q ss_pred EEccccccccCCCCC---chhhHHHhhhhhhc-----CCceEEEEecChhHHHHhhhcCHHHHhcccc-ccccCCCHHHH
Q psy2887 90 FIDELHTMIGTGKVE---GSIDAGNMLKPELS-----RGELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEET 160 (899)
Q Consensus 90 ~iDEi~~l~~~~~~~---~~~~~~~~l~~~l~-----~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~-i~l~~p~~~e~ 160 (899)
||||+|.|...+... ....+.+.|+..++ ...++||++||.++ .++++++|||+. +.++.|+.++|
T Consensus 148 ~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~-----~ld~al~rRf~~~i~i~~P~~~~r 222 (355)
T 2qp9_X 148 FIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW-----QLDSAIRRRFERRIYIPLPDLAAR 222 (355)
T ss_dssp EEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGG-----GSCHHHHHTCCEEEECCCCCHHHH
T ss_pred EEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcc-----cCCHHHHcccCEEEEeCCcCHHHH
Confidence 999999998754322 12334555555553 46799999999998 899999999975 89999999999
Q ss_pred HHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhh
Q psy2887 161 ISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 215 (899)
Q Consensus 161 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~ 215 (899)
.+|++.++.. ....+++..+..+++.+.+|.+ +++..++..|+..+
T Consensus 223 ~~il~~~l~~----~~~~~~~~~l~~la~~t~G~sg-----~dl~~l~~~A~~~a 268 (355)
T 2qp9_X 223 TTMFEINVGD----TPSVLTKEDYRTLGAMTEGYSG-----SDIAVVVKDALMQP 268 (355)
T ss_dssp HHHHHHHHTT----SCBCCCHHHHHHHHHHTTTCCH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh----CCCCCCHHHHHHHHHHcCCCCH-----HHHHHHHHHHHHHH
Confidence 9999988875 3345788999999999887755 66777777766443
No 36
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.80 E-value=4.9e-19 Score=191.76 Aligned_cols=216 Identities=17% Similarity=0.272 Sum_probs=157.4
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHh-------hcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccC---
Q psy2887 376 REKLLNIENLLCKRVVGQDEAISAVSNAIRRS-------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN--- 445 (899)
Q Consensus 376 ~~~l~~l~~~l~~~v~gq~~~~~~l~~~i~~~-------~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~--- 445 (899)
...+.++...+..+++|++.+++.|...+... ..|+..+ .+..++||+||||||||++|+++|+.+...
T Consensus 19 ~~~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~-~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~ 97 (309)
T 3syl_A 19 GSGAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHE-TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYV 97 (309)
T ss_dssp HTTHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSS-CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSS
T ss_pred cccHHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCC-CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCc
Confidence 34456777788888999999999998777543 2333333 333479999999999999999999998443
Q ss_pred -CCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEcccccc---------CHHHHHHHHHhhc
Q psy2887 446 -EESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKA---------NSDVFNILLQILD 515 (899)
Q Consensus 446 -~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~---------~~~~~~~Ll~~le 515 (899)
..+++.++++++... +.|.... .+...+..+.++||||||+|.+ ++.+++.|++.|+
T Consensus 98 ~~~~~~~~~~~~l~~~------------~~g~~~~-~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~ 164 (309)
T 3syl_A 98 RKGHLVSVTRDDLVGQ------------YIGHTAP-KTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME 164 (309)
T ss_dssp SSCCEEEECGGGTCCS------------STTCHHH-HHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHH
T ss_pred CCCcEEEEcHHHhhhh------------cccccHH-HHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHh
Confidence 337888888776432 3333222 3445555567789999999977 8899999999999
Q ss_pred CCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHH
Q psy2887 516 DGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN 595 (899)
Q Consensus 516 ~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~ 595 (899)
++ ..++++|+++|..... ....++|.|.+||+.++.|++++.+++.+|+.
T Consensus 165 ~~-----------~~~~~~i~~~~~~~~~-------------------~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~ 214 (309)
T 3syl_A 165 NN-----------RDDLVVILAGYADRME-------------------NFFQSNPGFRSRIAHHIEFPDYSDEELFEIAG 214 (309)
T ss_dssp HC-----------TTTCEEEEEECHHHHH-------------------HHHHHSTTHHHHEEEEEEECCCCHHHHHHHHH
T ss_pred cC-----------CCCEEEEEeCChHHHH-------------------HHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHH
Confidence 73 3577889999853210 01124688999999999999999999999998
Q ss_pred HHHHHHHHHHHhcCcceeecHHHHHHHHhcc-----cCcccccccccccHHHHHHHH
Q psy2887 596 IQLNILKNKLLKMNMDLKISKAALKKISNIG-----FDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 596 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~di~~~~~~l~~~l 647 (899)
.++.+ .+ +.+++++++.+.... +.+..+++++.+. +++++
T Consensus 215 ~~l~~-------~~--~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~---l~~a~ 259 (309)
T 3syl_A 215 HMLDD-------QN--YQMTPEAETALRAYIGLRRNQPHFANARSIRNA---LDRAR 259 (309)
T ss_dssp HHHHH-------TT--CEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHH---HHHHH
T ss_pred HHHHH-------cC--CCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHH---HHHHH
Confidence 88854 23 678999999987731 2555557777766 55544
No 37
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.80 E-value=2e-19 Score=198.50 Aligned_cols=189 Identities=22% Similarity=0.354 Sum_probs=142.0
Q ss_pred hccCCChHHHHHHHHHHHHHh--------hcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccc
Q psy2887 387 CKRVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 458 (899)
Q Consensus 387 ~~~v~gq~~~~~~l~~~i~~~--------~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~ 458 (899)
..+|.|.+.+++.|.+.+... ..|+..|+ .+|||||||||||++|+++|..+ +.+|+.++++++.
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~pr----GiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPR----GVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGSEFV 243 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCC----EEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGGGTC
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCc----eEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecchhh
Confidence 378999999999999888542 23544333 59999999999999999999999 9999999999987
Q ss_pred cccchhhccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccC--------------HHHHHHHHHhhcCCceecC
Q psy2887 459 EKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN--------------SDVFNILLQILDDGRLTDN 522 (899)
Q Consensus 459 ~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~--------------~~~~~~Ll~~le~g~~~~~ 522 (899)
+. |+|..+. +.+|..++...+|||||||+|.+. ..+.+.||..|++-.
T Consensus 244 ~~------------~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~---- 307 (428)
T 4b4t_K 244 HK------------YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD---- 307 (428)
T ss_dssp CS------------SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC----
T ss_pred cc------------ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC----
Confidence 65 7776665 678888888899999999998543 246788888888521
Q ss_pred CCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhh--ccCeEEEec-CCCHHHHHHHHHHHHH
Q psy2887 523 RGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFR-YLNRKNILSIANIQLN 599 (899)
Q Consensus 523 ~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~-~l~~~~~~~i~~~~l~ 599 (899)
...+++||+|||.... ++|+|++ |||..|.|+ +++.++...|++.++.
T Consensus 308 -----~~~~v~vI~aTN~~~~------------------------LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~ 358 (428)
T 4b4t_K 308 -----QSTNVKVIMATNRADT------------------------LDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIAS 358 (428)
T ss_dssp -----SSCSEEEEEEESCSSS------------------------CCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHH
T ss_pred -----CCCCEEEEEecCChhh------------------------cChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 2357889999997543 7888885 999999996 6899999999877763
Q ss_pred HHHHHHHhcCcceeecHHHHHHHHhcccCccccccccccc
Q psy2887 600 ILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGC 639 (899)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~ 639 (899)
+ ..+...++ ++.|+. ....|..+||...
T Consensus 359 ~-------~~l~~~~d---l~~lA~--~t~G~sgadi~~l 386 (428)
T 4b4t_K 359 K-------MSLAPEAD---LDSLII--RNDSLSGAVIAAI 386 (428)
T ss_dssp S-------SCBCTTCC---HHHHHH--HTTTCCHHHHHHH
T ss_pred C-------CCCCcccC---HHHHHH--HCCCCCHHHHHHH
Confidence 2 22111122 455555 2234566777765
No 38
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.78 E-value=1.4e-19 Score=206.10 Aligned_cols=139 Identities=14% Similarity=0.146 Sum_probs=94.8
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHH--hcCCCEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS--NNQKDII 88 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~--~~~~~~i 88 (899)
..+.++||+||||||||++|+++|+.+.. ..+++.++++.+. +++.|+.+. +.++|..+. ....|+|
T Consensus 61 ~~~~~iLl~GppGtGKT~la~ala~~l~~--------~~~~~~~~~~~~~--~~~~~~~~~-~~~~f~~a~~~~~~~~~i 129 (456)
T 2c9o_A 61 MAGRAVLLAGPPGTGKTALALAIAQELGS--------KVPFCPMVGSEVY--STEIKKTEV-LMENFRRAIGLRIKETKE 129 (456)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHCT--------TSCEEEEEGGGGC--CSSSCHHHH-HHHHHHHTEEEEEEEEEE
T ss_pred CCCCeEEEECCCcCCHHHHHHHHHHHhCC--------CceEEEEeHHHHH--HHhhhhhHH-HHHHHHHHHhhhhcCCcE
Confidence 34568999999999999999999999811 2789999988887 678899986 899999882 2345899
Q ss_pred EEEccccccccCCCCCch----hhHH------------------Hhhhhhh-----cCCceEEE-EecChhHHHHhhhcC
Q psy2887 89 IFIDELHTMIGTGKVEGS----IDAG------------------NMLKPEL-----SRGELHCI-GATTLNEYRQYIEKD 140 (899)
Q Consensus 89 L~iDEi~~l~~~~~~~~~----~~~~------------------~~l~~~l-----~~~~v~vI-~at~~~~~~~~~~ld 140 (899)
|||||+|.+++++..... .... +.+...+ ..+.+++| ++||.+. .+|
T Consensus 130 l~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~i~attn~~~-----~ld 204 (456)
T 2c9o_A 130 VYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVK-----RQG 204 (456)
T ss_dssp EEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHTTCCTTEEEEEETTTCCEE-----EEE
T ss_pred EEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhccCCCCCEEEEEcCCCCcc-----cCC
Confidence 999999999987643311 0000 1122222 34555555 6777776 788
Q ss_pred HHHHh--cccc---ccccCCC--HHHHHHHHH
Q psy2887 141 AAFER--RFQK---ILVEEPD--IEETISILR 165 (899)
Q Consensus 141 ~al~~--Rf~~---i~l~~p~--~~e~~~il~ 165 (899)
+++.| ||+. +.++.|+ .++|.+|++
T Consensus 205 ~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~ 236 (456)
T 2c9o_A 205 RCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQ 236 (456)
T ss_dssp EETTSCCTTSCSSSSEECCCCSCSEEEEEEEE
T ss_pred hhhcCCcccCcceeEecCCCchhHHHHHHHHH
Confidence 88865 8874 4566664 355555544
No 39
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.77 E-value=4.1e-18 Score=185.07 Aligned_cols=194 Identities=16% Similarity=0.291 Sum_probs=146.1
Q ss_pred ccCCChHHHHHHHHHHHHHhhc---CCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchh
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRS---GLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 464 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~---~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 464 (899)
.+++|++.+++.|...+..... .+.....|..++||+||||||||++|+++|+.+ +.+++.++++++...
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~~~---- 90 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLVSK---- 90 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEHHHHHTT----
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEchHHHhhc----
Confidence 6788999999999988843221 111223344579999999999999999999999 889999999877543
Q ss_pred hccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccCH-----------HHHHHHHHhhcCCceecCCCceEecCC
Q psy2887 465 RLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS-----------DVFNILLQILDDGRLTDNRGRTINFRN 531 (899)
Q Consensus 465 ~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~-----------~~~~~Ll~~le~g~~~~~~g~~~~~~~ 531 (899)
++|..+. +.++..++...++||||||||.+.+ .+++.|+..++.-. ....+
T Consensus 91 --------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~ 154 (322)
T 3eie_A 91 --------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG--------NDSQG 154 (322)
T ss_dssp --------TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG--------TSCCC
T ss_pred --------ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc--------ccCCc
Confidence 4444333 4567777788889999999998864 46788998887521 02356
Q ss_pred eEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcc
Q psy2887 532 TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 611 (899)
Q Consensus 532 ~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~ 611 (899)
++||+|||... .+++.+++||+..+.|++++.++..+|++..+. ...
T Consensus 155 v~vi~atn~~~------------------------~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~---------~~~ 201 (322)
T 3eie_A 155 VLVLGATNIPW------------------------QLDSAIRRRFERRIYIPLPDLAARTTMFEINVG---------DTP 201 (322)
T ss_dssp EEEEEEESCGG------------------------GSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHT---------TCC
T ss_pred eEEEEecCChh------------------------hCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhc---------cCC
Confidence 78888999643 367889999999999999999999999887762 223
Q ss_pred eeecHHHHHHHHhcccCccccccccccc
Q psy2887 612 LKISKAALKKISNIGFDLIYGARDVHGC 639 (899)
Q Consensus 612 ~~~~~~~~~~L~~~~~~~~~~~~di~~~ 639 (899)
..++++.++.|++ ....|..+||...
T Consensus 202 ~~~~~~~l~~la~--~t~g~sg~di~~l 227 (322)
T 3eie_A 202 CVLTKEDYRTLGA--MTEGYSGSDIAVV 227 (322)
T ss_dssp CCCCHHHHHHHHH--TTTTCCHHHHHHH
T ss_pred CCCCHHHHHHHHH--HcCCCCHHHHHHH
Confidence 5678888999987 3445666777765
No 40
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.76 E-value=1.8e-17 Score=179.38 Aligned_cols=195 Identities=17% Similarity=0.292 Sum_probs=144.5
Q ss_pred ccCCChHHHHHHHHHHHHHhhc---CCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchh
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRS---GLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 464 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~---~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 464 (899)
.+|+|++.+++.|.+.+..... .+.....|..++||+||||||||++|+++|+.+. +.+|+.++++++...
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~~~~~i~~~~l~~~---- 85 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLVSK---- 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT--SCEEEEEECCSSCCS----
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC--CCcEEEEEhHHHHhh----
Confidence 6788999999999988854211 1111123334799999999999999999999872 568999999877543
Q ss_pred hccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccC-----------HHHHHHHHHhhcCCceecCCCceEecCC
Q psy2887 465 RLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRTINFRN 531 (899)
Q Consensus 465 ~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 531 (899)
|.|..+. +.++..++...++||||||+|.+. ..+++.|+..++.-. ....+
T Consensus 86 --------~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~--------~~~~~ 149 (322)
T 1xwi_A 86 --------WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG--------VDNDG 149 (322)
T ss_dssp --------SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSS--------SCCTT
T ss_pred --------hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccc--------ccCCC
Confidence 4444433 556777777888999999999883 246788888887521 12357
Q ss_pred eEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcc
Q psy2887 532 TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 611 (899)
Q Consensus 532 ~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~ 611 (899)
++||+|||.+.. +++.+++||+..+.+++++.++..+|++..+. .. .
T Consensus 150 v~vI~atn~~~~------------------------ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~-------~~--~ 196 (322)
T 1xwi_A 150 ILVLGATNIPWV------------------------LDSAIRRRFEKRIYIPLPEPHARAAMFKLHLG-------TT--Q 196 (322)
T ss_dssp EEEEEEESCTTT------------------------SCHHHHHTCCEEEECCCCCHHHHHHHHHHHHT-------TC--C
T ss_pred EEEEEecCCccc------------------------CCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHh-------cC--C
Confidence 889999996532 67889999999999999999999999887762 22 3
Q ss_pred eeecHHHHHHHHhcccCccccccccccc
Q psy2887 612 LKISKAALKKISNIGFDLIYGARDVHGC 639 (899)
Q Consensus 612 ~~~~~~~~~~L~~~~~~~~~~~~di~~~ 639 (899)
..+++..++.|++ ....|..+||...
T Consensus 197 ~~l~~~~l~~la~--~t~G~sgadl~~l 222 (322)
T 1xwi_A 197 NSLTEADFRELGR--KTDGYSGADISII 222 (322)
T ss_dssp BCCCHHHHHHHHH--TCTTCCHHHHHHH
T ss_pred CCCCHHHHHHHHH--HcCCCCHHHHHHH
Confidence 4568888999987 3445666777766
No 41
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.75 E-value=1.9e-17 Score=182.19 Aligned_cols=175 Identities=23% Similarity=0.308 Sum_probs=139.5
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
....++||+||||||||++|+++|+.+ +.+++.++++.+. ..+.|+.+..++.+|..+.. ..|+|||
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~----------~~~~~~i~~~~l~--~~~~g~~~~~~~~~~~~a~~-~~~~vl~ 181 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS----------GATFFSISASSLT--SKWVGEGEKMVRALFAVARC-QQPAVIF 181 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT----------TCEEEEEEGGGGC--CSSTTHHHHHHHHHHHHHHH-TCSEEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc----------CCeEEEEehHHhh--ccccchHHHHHHHHHHHHHh-cCCeEEE
Confidence 456789999999999999999999988 8899999998877 56789999899999998874 4589999
Q ss_pred EccccccccCCCCCc---hhhHHHhhhhhhc------CCceEEEEecChhHHHHhhhcCHHHHhcccc-ccccCCCHHHH
Q psy2887 91 IDELHTMIGTGKVEG---SIDAGNMLKPELS------RGELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEET 160 (899)
Q Consensus 91 iDEi~~l~~~~~~~~---~~~~~~~l~~~l~------~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~-i~l~~p~~~e~ 160 (899)
|||+|.|...+.... ...+.+.++..++ ...+++|++||.++ .+++++++||.. +.++.|+.+++
T Consensus 182 iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~-----~l~~~l~~Rf~~~i~i~~p~~~~r 256 (357)
T 3d8b_A 182 IDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQ-----EIDEAARRRLVKRLYIPLPEASAR 256 (357)
T ss_dssp EETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGG-----GBCHHHHTTCCEEEECCCCCHHHH
T ss_pred EeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChh-----hCCHHHHhhCceEEEeCCcCHHHH
Confidence 999999987543221 2234445555553 35799999999988 899999999985 89999999999
Q ss_pred HHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHH
Q psy2887 161 ISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAA 212 (899)
Q Consensus 161 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~ 212 (899)
.++++.++.. .+..++++.+..+++.+.+|.+ ++...++..+.
T Consensus 257 ~~il~~~~~~----~~~~l~~~~l~~la~~t~G~s~-----~dl~~l~~~a~ 299 (357)
T 3d8b_A 257 KQIVINLMSK----EQCCLSEEEIEQIVQQSDAFSG-----ADMTQLCREAS 299 (357)
T ss_dssp HHHHHHHHHT----SCBCCCHHHHHHHHHHTTTCCH-----HHHHHHHHHHH
T ss_pred HHHHHHHHhh----cCCCccHHHHHHHHHHcCCCCH-----HHHHHHHHHHH
Confidence 9999988875 3456889999999999877654 55556666554
No 42
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.75 E-value=9.7e-18 Score=187.17 Aligned_cols=174 Identities=24% Similarity=0.357 Sum_probs=130.4
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
....++||+||||||||++|+++|.++ +.+++.+++..+. ..+.|..+..++.+|..+... .|+|||
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~----------~~~~~~v~~~~l~--~~~~g~~~~~~~~~~~~a~~~-~~~il~ 212 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES----------NATFFNISAASLT--SKYVGEGEKLVRALFAVAREL-QPSIIF 212 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT----------TCEEEEECSCCC---------CHHHHHHHHHHHHHS-SSEEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh----------cCcEEEeeHHHhh--ccccchHHHHHHHHHHHHHhc-CCeEEE
Confidence 346799999999999999999999998 8899999988776 567888888899999988754 589999
Q ss_pred EccccccccCCCCCc---hhhHHHhhhhhhc------CCceEEEEecChhHHHHhhhcCHHHHhccc-cccccCCCHHHH
Q psy2887 91 IDELHTMIGTGKVEG---SIDAGNMLKPELS------RGELHCIGATTLNEYRQYIEKDAAFERRFQ-KILVEEPDIEET 160 (899)
Q Consensus 91 iDEi~~l~~~~~~~~---~~~~~~~l~~~l~------~~~v~vI~at~~~~~~~~~~ld~al~~Rf~-~i~l~~p~~~e~ 160 (899)
|||+|.|+....... ...+.+.|+..++ ...++||++||.++ .+++++++||. .+.++.|+.+++
T Consensus 213 iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~-----~l~~~l~~R~~~~i~i~~p~~~~r 287 (389)
T 3vfd_A 213 IDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQ-----ELDEAVLRRFIKRVYVSLPNEETR 287 (389)
T ss_dssp EETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGG-----GCCHHHHTTCCEEEECCCCCHHHH
T ss_pred EECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCch-----hcCHHHHcCcceEEEcCCcCHHHH
Confidence 999999976543221 2334445555553 45799999999988 89999999998 499999999999
Q ss_pred HHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHH
Q psy2887 161 ISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEA 211 (899)
Q Consensus 161 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a 211 (899)
.+|++.++.. .+..++++.+..++..+.+|.+ ..+..++..+
T Consensus 288 ~~il~~~~~~----~~~~l~~~~~~~la~~~~g~~~-----~~l~~L~~~a 329 (389)
T 3vfd_A 288 LLLLKNLLCK----QGSPLTQKELAQLARMTDGYSG-----SDLTALAKDA 329 (389)
T ss_dssp HHHHHHHHTT----SCCCSCHHHHHHHHHHTTTCCH-----HHHHHHHHHH
T ss_pred HHHHHHHHHh----cCCCCCHHHHHHHHHHcCCCCH-----HHHHHHHHHH
Confidence 9999988875 4667899999999999887655 3444454444
No 43
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.75 E-value=7.3e-18 Score=190.66 Aligned_cols=178 Identities=20% Similarity=0.305 Sum_probs=134.8
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
..+.++||+||||||||++|+++|+.+ .+.+++.+++..+. +.+.|+.+..++.+|..+.. ..|+|||
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~---------~~~~~~~v~~~~l~--~~~~g~~~~~~~~~f~~a~~-~~~~vl~ 232 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEA---------NNSTFFSISSSDLV--SKWLGESEKLVKNLFQLARE-NKPSIIF 232 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHC---------CSSEEEEECCC-----------CCCTHHHHHHHHHH-SCSEEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc---------CCCCEEEEeHHHHH--hhhcchHHHHHHHHHHHHHH-cCCeEEE
Confidence 455789999999999999999999986 15678888887776 45778877788999998874 4589999
Q ss_pred EccccccccCCCCCc---hhhHHHhhhhhhc-----CCceEEEEecChhHHHHhhhcCHHHHhcccc-ccccCCCHHHHH
Q psy2887 91 IDELHTMIGTGKVEG---SIDAGNMLKPELS-----RGELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETI 161 (899)
Q Consensus 91 iDEi~~l~~~~~~~~---~~~~~~~l~~~l~-----~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~-i~l~~p~~~e~~ 161 (899)
|||+|.+++.+.... ...+.+.|+..++ ...++||++||.+. .++++++|||+. +.++.|+.++|.
T Consensus 233 iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~-----~ld~al~rRf~~~i~i~~P~~~~r~ 307 (444)
T 2zan_A 233 IDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW-----VLDSAIRRRFEKRIYIPLPEAHARA 307 (444)
T ss_dssp ESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGG-----GSCHHHHTTCCEEEECCCCCHHHHH
T ss_pred EechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCcc-----ccCHHHHhhcceEEEeCCcCHHHHH
Confidence 999999987654322 2335555655553 46799999999998 899999999985 899999999999
Q ss_pred HHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 162 SILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 162 ~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
.|++.++... ...+++..+..++..+.+|.+ +++..++..|+..
T Consensus 308 ~il~~~l~~~----~~~l~~~~l~~la~~t~G~sg-----adl~~l~~~a~~~ 351 (444)
T 2zan_A 308 AMFRLHLGST----QNSLTEADFQELGRKTDGYSG-----ADISIIVRDALMQ 351 (444)
T ss_dssp HHHHHHHTTS----CEECCHHHHHHHHHHTTTCCH-----HHHHHHHHHHHTH
T ss_pred HHHHHHHhcC----CCCCCHHHHHHHHHHcCCCCH-----HHHHHHHHHHHHH
Confidence 9999888653 344688999999999888765 5666777766643
No 44
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.75 E-value=1.3e-17 Score=183.02 Aligned_cols=194 Identities=16% Similarity=0.288 Sum_probs=141.8
Q ss_pred ccCCChHHHHHHHHHHHHHhh---cCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchh
Q psy2887 388 KRVVGQDEAISAVSNAIRRSR---SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 464 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~---~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 464 (899)
.+|+|++.+++.|...+.... ..+.....|..++||+||||||||++|+++|+.+ +.+++.++++++...
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~~~l~~~---- 123 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLVSK---- 123 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEHHHHHSC----
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeHHHHhhh----
Confidence 678999999999998875321 0011112333469999999999999999999999 889999998876543
Q ss_pred hccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccCH-----------HHHHHHHHhhcCCceecCCCceEecCC
Q psy2887 465 RLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS-----------DVFNILLQILDDGRLTDNRGRTINFRN 531 (899)
Q Consensus 465 ~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~-----------~~~~~Ll~~le~g~~~~~~g~~~~~~~ 531 (899)
++|..+. +.++..++...++||||||+|.+.+ .+++.|+..|+.-. ....+
T Consensus 124 --------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~ 187 (355)
T 2qp9_X 124 --------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG--------NDSQG 187 (355)
T ss_dssp --------C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-----------CC
T ss_pred --------hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc--------ccCCC
Confidence 3343332 4466666777889999999998874 46888888887411 12356
Q ss_pred eEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcc
Q psy2887 532 TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 611 (899)
Q Consensus 532 ~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~ 611 (899)
++||+|||... .+++.+++||+..+.+++++.++..+|+..++. .. .
T Consensus 188 v~vI~atn~~~------------------------~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~-------~~--~ 234 (355)
T 2qp9_X 188 VLVLGATNIPW------------------------QLDSAIRRRFERRIYIPLPDLAARTTMFEINVG-------DT--P 234 (355)
T ss_dssp EEEEEEESCGG------------------------GSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHT-------TS--C
T ss_pred eEEEeecCCcc------------------------cCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHh-------hC--C
Confidence 88999999643 367789999999999999999999999887762 22 2
Q ss_pred eeecHHHHHHHHhcccCccccccccccc
Q psy2887 612 LKISKAALKKISNIGFDLIYGARDVHGC 639 (899)
Q Consensus 612 ~~~~~~~~~~L~~~~~~~~~~~~di~~~ 639 (899)
..+++..++.|+.. ...|..+||...
T Consensus 235 ~~~~~~~l~~la~~--t~G~sg~dl~~l 260 (355)
T 2qp9_X 235 SVLTKEDYRTLGAM--TEGYSGSDIAVV 260 (355)
T ss_dssp BCCCHHHHHHHHHH--TTTCCHHHHHHH
T ss_pred CCCCHHHHHHHHHH--cCCCCHHHHHHH
Confidence 45678888998873 344566788776
No 45
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.75 E-value=2.2e-17 Score=187.49 Aligned_cols=177 Identities=24% Similarity=0.329 Sum_probs=139.3
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
..+.++||+||||||||++|+++|+.+ +.+++.+++..+. +.+.|+.+..++.+|..+.. ..|+|||
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~----------~~~fv~vn~~~l~--~~~~g~~~~~~~~~f~~A~~-~~p~iLf 302 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLINGPEIM--SKLAGESESNLRKAFEEAEK-NAPAIIF 302 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHC----------SSEEEEEEHHHHH--TSCTTHHHHHHHHHHHHHHH-TCSEEEE
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHh----------CCCEEEEEchHhh--hhhcchhHHHHHHHHHHHHh-cCCcEEE
Confidence 456689999999999999999999988 8899999999888 66889999999999999975 4589999
Q ss_pred EccccccccCCCCCc---hhhHHHhhhhhhc----CCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCHHHH
Q psy2887 91 IDELHTMIGTGKVEG---SIDAGNMLKPELS----RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEET 160 (899)
Q Consensus 91 iDEi~~l~~~~~~~~---~~~~~~~l~~~l~----~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~~e~ 160 (899)
|||+|.|.+.+.... ...+.+.|+..|+ ...+++|++||.++ .+++++++ ||.. +.++.|+.++|
T Consensus 303 LDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~-----~Ld~al~r~gRf~~~i~i~~P~~~eR 377 (489)
T 3hu3_A 303 IDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPN-----SIDPALRRFGRFDREVDIGIPDATGR 377 (489)
T ss_dssp EESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGG-----GBCGGGGSTTSSCEEEECCCCCHHHH
T ss_pred ecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCcc-----ccCHHHhCCCcCceEEEeCCCCHHHH
Confidence 999999998664332 2345566666664 56899999999998 89999999 8986 99999999999
Q ss_pred HHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhh
Q psy2887 161 ISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 215 (899)
Q Consensus 161 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~ 215 (899)
.+||+.+++...... +..+..++..+.+|.+ .++..++..|+...
T Consensus 378 ~~IL~~~~~~~~l~~-----~~~l~~la~~t~g~s~-----~dL~~L~~~A~~~a 422 (489)
T 3hu3_A 378 LEILQIHTKNMKLAD-----DVDLEQVANETHGHVG-----ADLAALCSEAALQA 422 (489)
T ss_dssp HHHHHHHTTTSCBCT-----TCCHHHHHHTCTTCCH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcc-----hhhHHHHHHHccCCcH-----HHHHHHHHHHHHHH
Confidence 999998887644322 2234566666666544 56666666665443
No 46
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.74 E-value=3e-17 Score=176.56 Aligned_cols=174 Identities=26% Similarity=0.359 Sum_probs=135.7
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEE
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFI 91 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~i 91 (899)
...++||+||||||||++|+++|+.+ +.+++.+++..+. ..+.|+.+..++.+|..+.. ..|+||||
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~----------~~~~~~i~~~~l~--~~~~~~~~~~~~~~~~~~~~-~~~~vl~i 119 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC----------SATFLNISAASLT--SKYVGDGEKLVRALFAVARH-MQPSIIFI 119 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT----------TCEEEEEESTTTS--SSSCSCHHHHHHHHHHHHHH-TCSEEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh----------CCCeEEeeHHHHh--hcccchHHHHHHHHHHHHHH-cCCcEEEe
Confidence 46789999999999999999999988 7889999887776 55778888889999988874 45899999
Q ss_pred ccccccccCCCCCc---hhhHHHhhhhhhcC-------CceEEEEecChhHHHHhhhcCHHHHhcccc-ccccCCCHHHH
Q psy2887 92 DELHTMIGTGKVEG---SIDAGNMLKPELSR-------GELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEET 160 (899)
Q Consensus 92 DEi~~l~~~~~~~~---~~~~~~~l~~~l~~-------~~v~vI~at~~~~~~~~~~ld~al~~Rf~~-i~l~~p~~~e~ 160 (899)
||++.+........ .....+.++..++. ..+++|++||.++ .+++++++||+. +.++.|+.+++
T Consensus 120 DEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~-----~l~~~l~~R~~~~i~~~~p~~~~r 194 (297)
T 3b9p_A 120 DEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ-----ELDEAALRRFTKRVYVSLPDEQTR 194 (297)
T ss_dssp ETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG-----GBCHHHHHHCCEEEECCCCCHHHH
T ss_pred ccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh-----hCCHHHHhhCCeEEEeCCcCHHHH
Confidence 99999987653321 22344445544431 4689999999998 899999999975 89999999999
Q ss_pred HHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHH
Q psy2887 161 ISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAA 212 (899)
Q Consensus 161 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~ 212 (899)
..|++.++.. .+..+++..+..++..+.+|.+ .+...+++.++
T Consensus 195 ~~il~~~~~~----~~~~~~~~~~~~la~~~~g~~~-----~~l~~l~~~a~ 237 (297)
T 3b9p_A 195 ELLLNRLLQK----QGSPLDTEALRRLAKITDGYSG-----SDLTALAKDAA 237 (297)
T ss_dssp HHHHHHHHGG----GSCCSCHHHHHHHHHHTTTCCH-----HHHHHHHHHHT
T ss_pred HHHHHHHHHh----cCCCCCHHHHHHHHHHcCCCCH-----HHHHHHHHHHH
Confidence 9999988775 3456889999999998877654 34445555554
No 47
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.74 E-value=7.1e-18 Score=168.75 Aligned_cols=154 Identities=68% Similarity=1.160 Sum_probs=128.9
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
..+.+++|+||||||||++|+++++.+.....+....+.+++.+++..+..+..+.|.....+..++..+.....+.||+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ 120 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILF 120 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEE
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEE
Confidence 44678999999999999999999999887766666678899999998888777777888888899988887666788999
Q ss_pred EccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHHHHHHHH
Q psy2887 91 IDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISIL 164 (899)
Q Consensus 91 iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~il 164 (899)
|||++.+...........+.+.+...++.+.+.+|++||..++.....+++++.+||..+.++.|+.+++.+|+
T Consensus 121 iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 121 IDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred EeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 99999998665444445667788888888999999999999887777899999999998999999999998775
No 48
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.74 E-value=9e-16 Score=201.71 Aligned_cols=139 Identities=19% Similarity=0.247 Sum_probs=101.2
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHh----------
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN---------- 82 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~---------- 82 (899)
+.++||+||||||||++|+.++... .+..++.++++..... ..++..++....
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~---------~~~~~~~infsa~ts~--------~~~~~~i~~~~~~~~~~~g~~~ 1329 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNS---------SLYDVVGINFSKDTTT--------EHILSALHRHTNYVTTSKGLTL 1329 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSC---------SSCEEEEEECCTTCCH--------HHHHHHHHHHBCCEEETTTEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcC---------CCCceEEEEeecCCCH--------HHHHHHHHHHhhhccccCCccc
Confidence 4589999999999999996655432 1567777776554321 235555554310
Q ss_pred ----cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC--------------ceEEEEecChhHHHHhhhcCHHHH
Q psy2887 83 ----NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG--------------ELHCIGATTLNEYRQYIEKDAAFE 144 (899)
Q Consensus 83 ----~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~--------------~v~vI~at~~~~~~~~~~ld~al~ 144 (899)
.+.++|+||||++.. ..+..|++...+.|.+.++.+ ++.+|+|||+++......++++|+
T Consensus 1330 ~P~~~gk~~VlFiDEinmp--~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rll 1407 (2695)
T 4akg_A 1330 LPKSDIKNLVLFCDEINLP--KLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFT 1407 (2695)
T ss_dssp EEBSSSSCEEEEEETTTCS--CCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHH
T ss_pred cCCCCCceEEEEecccccc--cccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhh
Confidence 123579999999964 334456667778888888642 378999999985334457999999
Q ss_pred hccccccccCCCHHHHHHHHHhhhhh
Q psy2887 145 RRFQKILVEEPDIEETISILRGLQKK 170 (899)
Q Consensus 145 ~Rf~~i~l~~p~~~e~~~il~~~~~~ 170 (899)
|||.++.++.|+.+++..|+..++..
T Consensus 1408 Rrf~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1408 RHAAILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp TTEEEEECCCCTTTHHHHHHHHHHHH
T ss_pred heeeEEEeCCCCHHHHHHHHHHHHHH
Confidence 99988999999999999999888765
No 49
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.74 E-value=1.3e-16 Score=170.43 Aligned_cols=179 Identities=25% Similarity=0.345 Sum_probs=136.9
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
..+.++||+||||||||++|+++|+.+ +.+++.+++..+. ..+.|..+..+..+|..+... .|+|||
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~----------~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~vl~ 115 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET----------NATFIRVVGSELV--KKFIGEGASLVKDIFKLAKEK-APSIIF 115 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT----------TCEEEEEEGGGGC--CCSTTHHHHHHHHHHHHHHHT-CSEEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEehHHHH--HhccchHHHHHHHHHHHHHHc-CCeEEE
Confidence 456789999999999999999999998 8899999888776 567899999999999988744 589999
Q ss_pred EccccccccCCCCC---chhhHHHhhhhhh-------cCCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCH
Q psy2887 91 IDELHTMIGTGKVE---GSIDAGNMLKPEL-------SRGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDI 157 (899)
Q Consensus 91 iDEi~~l~~~~~~~---~~~~~~~~l~~~l-------~~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~ 157 (899)
|||+|.+.+.+... +.....+.+...+ ..+.+++|++||.++ .+++++++ ||+. +.++.|+.
T Consensus 116 iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~ 190 (285)
T 3h4m_A 116 IDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPD-----ILDPAILRPGRFDRIIEVPAPDE 190 (285)
T ss_dssp EETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGG-----GBCHHHHSTTSEEEEEECCCCCH
T ss_pred EECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCch-----hcCHHHcCCCcCCeEEEECCCCH
Confidence 99999998765432 2223333343333 245799999999998 89999999 9985 99999999
Q ss_pred HHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhhh
Q psy2887 158 EETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKI 217 (899)
Q Consensus 158 ~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~~ 217 (899)
+++.+|++.++...... .+..+..++..+.++. +.++..++..|...+..
T Consensus 191 ~~r~~il~~~~~~~~~~-----~~~~~~~l~~~~~g~~-----~~~i~~l~~~a~~~a~~ 240 (285)
T 3h4m_A 191 KGRLEILKIHTRKMNLA-----EDVNLEEIAKMTEGCV-----GAELKAICTEAGMNAIR 240 (285)
T ss_dssp HHHHHHHHHHHTTSCBC-----TTCCHHHHHHHCTTCC-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCC-----CcCCHHHHHHHcCCCC-----HHHHHHHHHHHHHHHHH
Confidence 99999999887654322 2223566667766553 46777777777665543
No 50
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.73 E-value=1.1e-17 Score=179.74 Aligned_cols=177 Identities=20% Similarity=0.327 Sum_probs=134.0
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
..+.++||+||||||||++|+++|+.+ +.+++.+++..+. +.+.|+.+..++.+|..+... .|+|||
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~----------~~~~i~v~~~~l~--~~~~g~~~~~~~~~f~~a~~~-~p~il~ 113 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISIKGPELL--TMWFGESEANVREIFDKARQA-APCVLF 113 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT----------TCEEEEECHHHHH--HHHHTTCTTHHHHHHHHHHHT-CSEEEE
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh----------CCCEEEEEhHHHH--hhhcCchHHHHHHHHHHHHhc-CCeEEE
Confidence 455689999999999999999999988 7889999988776 456677777889999998743 589999
Q ss_pred EccccccccCCCC------CchhhHHHhhhhhhc----CCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCH
Q psy2887 91 IDELHTMIGTGKV------EGSIDAGNMLKPELS----RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDI 157 (899)
Q Consensus 91 iDEi~~l~~~~~~------~~~~~~~~~l~~~l~----~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~ 157 (899)
|||+|.+...+.. .....+.+.|+..++ ...++||++||.++ .++++++| ||+. +.++.|+.
T Consensus 114 iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~-----~ld~al~r~gRf~~~i~i~~p~~ 188 (301)
T 3cf0_A 114 FDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD-----IIDPAILRPGRLDQLIYIPLPDE 188 (301)
T ss_dssp ECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGG-----GSCGGGGSTTSSCEEEECCCCCH
T ss_pred EEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcc-----ccChHHhcCCccceEEecCCcCH
Confidence 9999999864321 112234455665553 45799999999998 89999999 9985 99999999
Q ss_pred HHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhh
Q psy2887 158 EETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 215 (899)
Q Consensus 158 ~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~ 215 (899)
++|.+|++.+++......+ + .+..++..+.+|.+ +++..+++.|+..+
T Consensus 189 ~~r~~il~~~l~~~~~~~~--~---~~~~la~~~~g~sg-----~dl~~l~~~a~~~a 236 (301)
T 3cf0_A 189 KSRVAILKANLRKSPVAKD--V---DLEFLAKMTNGFSG-----ADLTEICQRACKLA 236 (301)
T ss_dssp HHHHHHHHHHHTTSCBCSS--C---CHHHHHHTCSSCCH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCcc--c---hHHHHHHHcCCCCH-----HHHHHHHHHHHHHH
Confidence 9999999988876443222 2 24455666655544 56677777766543
No 51
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.73 E-value=6.8e-17 Score=181.63 Aligned_cols=177 Identities=21% Similarity=0.313 Sum_probs=135.6
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEE
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFI 91 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~i 91 (899)
.+.++||+||||||||++|+++|+++ +.+++.++++.+. ..+.|.....++.+|..+.. ..|+||||
T Consensus 48 ~p~gvLL~GppGtGKT~Laraia~~~----------~~~f~~is~~~~~--~~~~g~~~~~~r~lf~~A~~-~~p~ILfI 114 (476)
T 2ce7_A 48 MPKGILLVGPPGTGKTLLARAVAGEA----------NVPFFHISGSDFV--ELFVGVGAARVRDLFAQAKA-HAPCIVFI 114 (476)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHHH----------TCCEEEEEGGGTT--TCCTTHHHHHHHHHHHHHHH-TCSEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc----------CCCeeeCCHHHHH--HHHhcccHHHHHHHHHHHHh-cCCCEEEE
Confidence 45679999999999999999999998 7889999988776 45788888899999999875 45999999
Q ss_pred ccccccccCCCCC--c----hhhHHHhhhhhhc----CCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCHH
Q psy2887 92 DELHTMIGTGKVE--G----SIDAGNMLKPELS----RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIE 158 (899)
Q Consensus 92 DEi~~l~~~~~~~--~----~~~~~~~l~~~l~----~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~~ 158 (899)
||+|.+...+... + .....+.|+..++ ...++||++||.++ .+|++++| ||+. +.++.|+.+
T Consensus 115 DEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~-----~Ld~allR~gRFd~~i~i~~Pd~~ 189 (476)
T 2ce7_A 115 DEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD-----ILDPALLRPGRFDKKIVVDPPDML 189 (476)
T ss_dssp ETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG-----GSCGGGGSTTSSCEEEECCCCCHH
T ss_pred echhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh-----hhchhhcccCcceeEeecCCCCHH
Confidence 9999998765321 1 1234455555553 45799999999998 78999998 9995 999999999
Q ss_pred HHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhh
Q psy2887 159 ETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIK 216 (899)
Q Consensus 159 e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~ 216 (899)
+|.+|++.+++......+ ..+..++..+.+|.+ +++..++..|+..+.
T Consensus 190 ~R~~Il~~~~~~~~l~~~-----v~l~~la~~t~G~sg-----adL~~lv~~Aal~A~ 237 (476)
T 2ce7_A 190 GRKKILEIHTRNKPLAED-----VNLEIIAKRTPGFVG-----ADLENLVNEAALLAA 237 (476)
T ss_dssp HHHHHHHHHHTTSCBCTT-----CCHHHHHHTCTTCCH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcch-----hhHHHHHHhcCCCcH-----HHHHHHHHHHHHHHH
Confidence 999999988776432222 225567777766553 677788888776554
No 52
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase, toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN; 2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
Probab=99.73 E-value=7.8e-18 Score=179.04 Aligned_cols=148 Identities=22% Similarity=0.323 Sum_probs=109.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCcccccccccccHHHHHHHHHHhhccCCccceeecc
Q psy2887 584 YLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLG 663 (899)
Q Consensus 584 ~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~G 663 (899)
.++++++..++.....-+ ..+.--+.+ ..+.+.+|||||+++.|.++++.+++. +.+.++|+|
T Consensus 29 ~l~~~~~~~l~~~~~~il----~~e~~l~~~------------~~~i~viGDIHG~~~~L~~ll~~~g~~-~~~~~vflG 91 (330)
T 1fjm_A 29 QLTENEIRGLCLKSREIF----LSQPILLEL------------EAPLKICGDIHGQYYDLLRLFEYGGFP-PESNYLFLG 91 (330)
T ss_dssp CCCHHHHHHHHHHHHHHH----HHSCSEEEE------------CSSEEEECBCTTCHHHHHHHHHHHCST-TSSCEEECS
T ss_pred CCCHHHHHHHHHHHHHHH----HhCCCeEee------------cCceEEecCCCCCHHHHHHHHHHhCCC-CcceEEeCC
Confidence 578888887765544332 223221222 135688999999999999999999884 558899999
Q ss_pred ccCCCCceEehhHHHHHhc----CCccEEEccCChHhHHhHhhhcccCchhchHHHhhCCcChHHHHHHHhcCCce-EEe
Q psy2887 664 DLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLA-IYY 738 (899)
Q Consensus 664 D~~d~g~~~~~~~~~l~~~----~~~~~~v~GNHe~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~-~~~ 738 (899)
|+|||||.|.+|+++|+++ ..++++|+||||.+++....+... +....+ .....+.+.+||+.||++ +..
T Consensus 92 D~VDRG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~l~~~~gf~~----e~~~~y-~~~l~~~~~~~f~~LPl~~~i~ 166 (330)
T 1fjm_A 92 DYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYD----ECKRRY-NIKLWKTFTDCFNCLPIAAIVD 166 (330)
T ss_dssp CCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSHHHHHHHSHHH----HHHHHS-CHHHHHHHHHHHTTCCCEEEET
T ss_pred CcCCCCCChHHHHHHHHHhhhhcCCceEEecCCchHhhhhhhhhhhh----hhhhhc-cHHHHHHHHHHHHhCCceEEEc
Confidence 9999999999999999886 457999999999999876544211 111111 112346789999999996 455
Q ss_pred CCEEEEecccccccc
Q psy2887 739 KKYLMIHAGVAKQWT 753 (899)
Q Consensus 739 ~~~~~vHAg~~~~~~ 753 (899)
+++++||||++|.|.
T Consensus 167 ~~i~~vHgGl~p~~~ 181 (330)
T 1fjm_A 167 EKIFCCHGGLSPDLQ 181 (330)
T ss_dssp TTEEEESSCCCTTCS
T ss_pred CcEEEEccCCCcccC
Confidence 789999999999884
No 53
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.72 E-value=9.7e-17 Score=181.45 Aligned_cols=195 Identities=17% Similarity=0.295 Sum_probs=139.5
Q ss_pred ccCCChHHHHHHHHHHHHHhhc---CCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchh
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRS---GLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 464 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~---~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 464 (899)
.+|+|++.+++.|...+..... .+.....|..++||+||||||||++|+++|+.+. +.+|+.++++++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~--~~~~~~v~~~~l~~~---- 207 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLVSK---- 207 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC--SSEEEEECCC---------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC--CCCEEEEeHHHHHhh----
Confidence 6789999999999988743210 1111122334799999999999999999999872 568999999887543
Q ss_pred hccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccC-----------HHHHHHHHHhhcCCceecCCCceEecCC
Q psy2887 465 RLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRTINFRN 531 (899)
Q Consensus 465 ~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 531 (899)
|+|..+. +.++..++...++||||||||.+. ..+++.|+..|++-. ....+
T Consensus 208 --------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~--------~~~~~ 271 (444)
T 2zan_A 208 --------WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG--------VDNDG 271 (444)
T ss_dssp ------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSS--------CCCSS
T ss_pred --------hcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcc--------cCCCC
Confidence 3343333 456777777888999999999883 357888888887521 12367
Q ss_pred eEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcc
Q psy2887 532 TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 611 (899)
Q Consensus 532 ~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~ 611 (899)
++||+|||.+. .+++.+++||+.++.+++++.++...|+...+. .. .
T Consensus 272 v~vI~atn~~~------------------------~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~-------~~--~ 318 (444)
T 2zan_A 272 ILVLGATNIPW------------------------VLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLG-------ST--Q 318 (444)
T ss_dssp CEEEEEESCGG------------------------GSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHT-------TS--C
T ss_pred EEEEecCCCcc------------------------ccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHh-------cC--C
Confidence 88999999643 367889999999999999999999999877762 22 3
Q ss_pred eeecHHHHHHHHhcccCccccccccccc
Q psy2887 612 LKISKAALKKISNIGFDLIYGARDVHGC 639 (899)
Q Consensus 612 ~~~~~~~~~~L~~~~~~~~~~~~di~~~ 639 (899)
..+++..++.|+.. ...|..+||...
T Consensus 319 ~~l~~~~l~~la~~--t~G~sgadl~~l 344 (444)
T 2zan_A 319 NSLTEADFQELGRK--TDGYSGADISII 344 (444)
T ss_dssp EECCHHHHHHHHHH--TTTCCHHHHHHH
T ss_pred CCCCHHHHHHHHHH--cCCCCHHHHHHH
Confidence 56788888998873 344566777765
No 54
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.72 E-value=7.6e-17 Score=169.99 Aligned_cols=179 Identities=20% Similarity=0.293 Sum_probs=127.5
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
..+.++||+||||||||++|+++|+.+ +.+++.+++..+. ..+.|.....++.+|..+... .|+|||
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~----------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~-~~~vl~ 103 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA----------QVPFLAMAGAEFV--EVIGGLGAARVRSLFKEARAR-APCIVY 103 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH----------TCCEEEEETTTTS--SSSTTHHHHHHHHHHHHHHHT-CSEEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEechHHHH--hhccChhHHHHHHHHHHHHhc-CCeEEE
Confidence 456789999999999999999999998 7889999988775 456788888899999988743 589999
Q ss_pred EccccccccCCCCC-------chhhHHHhhhhhhc----CCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCC
Q psy2887 91 IDELHTMIGTGKVE-------GSIDAGNMLKPELS----RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPD 156 (899)
Q Consensus 91 iDEi~~l~~~~~~~-------~~~~~~~~l~~~l~----~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~ 156 (899)
|||+|.+...+... ......+.++..++ ...+++|++||.++ .+++++.+ ||+. +.++.|+
T Consensus 104 iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~-----~ld~~l~~~~R~~~~i~i~~p~ 178 (262)
T 2qz4_A 104 IDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRAD-----ILDGALMRPGRLDRHVFIDLPT 178 (262)
T ss_dssp EECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGG-----GGGSGGGSTTSCCEEEECCSCC
T ss_pred EeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChh-----hcCHHHhcCCcCCeEEEeCCcC
Confidence 99999997654321 11223334444443 35789999999988 78999999 9975 8999999
Q ss_pred HHHHHHHHHhhhhhhhcccCCCCCHH-HHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhh
Q psy2887 157 IEETISILRGLQKKYEVHHGVEITDP-AIVAASELSYRYISDRFMPDKAIDLIDEAAAKIK 216 (899)
Q Consensus 157 ~~e~~~il~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~ 216 (899)
.++|.+|++.++.... ...+.. ....++..+.+|. +.++..+++.|+..+.
T Consensus 179 ~~~r~~il~~~~~~~~----~~~~~~~~~~~l~~~~~g~~-----~~~l~~l~~~a~~~a~ 230 (262)
T 2qz4_A 179 LQERREIFEQHLKSLK----LTQSSTFYSQRLAELTPGFS-----GADIANICNEAALHAA 230 (262)
T ss_dssp HHHHHHHHHHHHHHTT----CCBTHHHHHHHHHHTCTTCC-----HHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHhCC----CCcchhhHHHHHHHHCCCCC-----HHHHHHHHHHHHHHHH
Confidence 9999999999887643 334443 3466666665543 3567777777765543
No 55
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.71 E-value=2.4e-16 Score=172.88 Aligned_cols=178 Identities=16% Similarity=0.236 Sum_probs=137.0
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhcc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 467 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (899)
.+++|++.+++.+...+...... ..+..++||+||||||||++|+++|+.+ +.+++.++++.+...
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~----~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~------- 94 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKR----NECLDHILFSGPAGLGKTTLANIISYEM---SANIKTTAAPMIEKS------- 94 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHT----TSCCCCEEEECSTTSSHHHHHHHHHHHT---TCCEEEEEGGGCCSH-------
T ss_pred HHhCChHHHHHHHHHHHHHHHhc----CCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEecchhccch-------
Confidence 57899999999999998876421 1223369999999999999999999998 888999988765322
Q ss_pred CCCCCcccccccchhhHHHH-hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCC-------CceEecCCeEEEEecC
Q psy2887 468 GAPPGYIGYEEGGYLTEIVR-RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNR-------GRTINFRNTIIVMTSN 539 (899)
Q Consensus 468 g~~~~~~g~~~~~~l~~~~~-~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~-------g~~~~~~~~~iI~tsn 539 (899)
..+...+. .+.+++||||||+.+++..++.|++.++++.+.... ...++..++++|++||
T Consensus 95 ------------~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn 162 (338)
T 3pfi_A 95 ------------GDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATT 162 (338)
T ss_dssp ------------HHHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEES
T ss_pred ------------hHHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCC
Confidence 12333333 346689999999999999999999999987654211 1223344688999999
Q ss_pred CChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHH
Q psy2887 540 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAAL 619 (899)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~ 619 (899)
.. ..++++|++||+.++.|++++.+++..++...+.. .+ +.++++++
T Consensus 163 ~~------------------------~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~-------~~--~~~~~~~~ 209 (338)
T 3pfi_A 163 RA------------------------GMLSNPLRDRFGMQFRLEFYKDSELALILQKAALK-------LN--KTCEEKAA 209 (338)
T ss_dssp CG------------------------GGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH-------TT--CEECHHHH
T ss_pred Cc------------------------cccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHh-------cC--CCCCHHHH
Confidence 52 23788899999999999999999999998766632 23 67899999
Q ss_pred HHHHh
Q psy2887 620 KKISN 624 (899)
Q Consensus 620 ~~L~~ 624 (899)
+.++.
T Consensus 210 ~~l~~ 214 (338)
T 3pfi_A 210 LEIAK 214 (338)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99988
No 56
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform; protein-protein complex, heat repeat, signaling protein; HET: OKA; 2.60A {Homo sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C* 3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C* 2nyl_C*
Probab=99.71 E-value=4.1e-17 Score=172.56 Aligned_cols=151 Identities=21% Similarity=0.320 Sum_probs=110.4
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCcccccccccccHHHHHHHHHHhhccCCccceeec
Q psy2887 583 RYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFL 662 (899)
Q Consensus 583 ~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~ 662 (899)
..++++++..++....+.+ ..+.--+.+ -.+.+.+|||||++..|.++++.+++. +.+.++|+
T Consensus 21 ~~l~~~~~~~l~~~~~~il----~~e~~~~~~------------~~~i~viGDIHG~~~~L~~ll~~~~~~-~~~~~vfl 83 (309)
T 2ie4_C 21 KQLSESQVKSLCEKAKEIL----TKESNVQEV------------RCPVTVCGDVHGQFHDLMELFRIGGKS-PDTNYLFM 83 (309)
T ss_dssp CCCCHHHHHHHHHHHHHHH----HHSCTTEEE------------CSSEEEECCCTTCHHHHHHHHHHHCCT-TTSCEEEC
T ss_pred CCCCHHHHHHHHHHHHHHH----HhCCCEEec------------cCCEEEEecCCCCHHHHHHHHHHcCCC-CCCEEEEe
Confidence 3678888888765544333 223211222 135678999999999999999998874 45778999
Q ss_pred cccCCCCceEehhHHHHHhc----CCccEEEccCChHhHHhHhhhcccCchhchHHHhhCCcChHHHHHHHhcCCceEE-
Q psy2887 663 GDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIY- 737 (899)
Q Consensus 663 GD~~d~g~~~~~~~~~l~~~----~~~~~~v~GNHe~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~- 737 (899)
||+|||||.+.+|+++++++ ..++.+|+||||.+++....+.. .+....+......+.+.+|++.||+...
T Consensus 84 GD~VDRG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~l~~~~gf~----~e~~~~yg~~~l~~~~~~~~~~LPl~~~i 159 (309)
T 2ie4_C 84 GDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFY----DECLRKYGNANVWKYFTDLFDYLPLTALV 159 (309)
T ss_dssp SCCSSSSTTHHHHHHHHHHHHHHCTTTEEECCCTTSSTTGGGTSSHH----HHHHHHSSSTHHHHHHHHHTTSSCSCEEE
T ss_pred CCccCCCCChHHHHHHHHHHHhhCCCcEEEEeCCCCHHHHhhhhhhh----HHHHhhcccHHHHHHHHHHHHhCCceEEE
Confidence 99999999999999999987 34799999999999886433211 1222222222335678899999999864
Q ss_pred eCCEEEEecccccccch
Q psy2887 738 YKKYLMIHAGVAKQWTA 754 (899)
Q Consensus 738 ~~~~~~vHAg~~~~~~~ 754 (899)
.+++++||||++|.|..
T Consensus 160 ~~~il~vHgGl~p~~~~ 176 (309)
T 2ie4_C 160 DGQIFCLHGGLSPSIDT 176 (309)
T ss_dssp TTTEEECSSCCCTTCCS
T ss_pred cCcEEEECCCCCCcccC
Confidence 57899999999998863
No 57
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.71 E-value=1.7e-16 Score=171.74 Aligned_cols=191 Identities=18% Similarity=0.182 Sum_probs=145.4
Q ss_pred CCCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEE
Q psy2887 10 FYFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIII 89 (899)
Q Consensus 10 ~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL 89 (899)
.+...++||+||||||||++|+++|+.+.... .....+++.+++..+. ..+.|.....+..+|..+. ++||
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~~l~~~~---~~~~~~~~~~~~~~l~--~~~~g~~~~~~~~~~~~~~----~~vl 134 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAGLLHRLG---YVRKGHLVSVTRDDLV--GQYIGHTAPKTKEVLKRAM----GGVL 134 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHHHHHHTT---SSSSCCEEEECGGGTC--CSSTTCHHHHHHHHHHHHT----TSEE
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHHhcC---CcCCCcEEEEcHHHhh--hhcccccHHHHHHHHHhcC----CCEE
Confidence 45566899999999999999999999985532 1224578888888776 5677888888888888773 5699
Q ss_pred EEccccccccCCCC-CchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhccc-cccccCCCHHHHHHHHH
Q psy2887 90 FIDELHTMIGTGKV-EGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQ-KILVEEPDIEETISILR 165 (899)
Q Consensus 90 ~iDEi~~l~~~~~~-~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~-~i~l~~p~~~e~~~il~ 165 (899)
||||+|.|+..+.. .....+.+.|+..++. ..+++|++||..++..+..++|+|++||+ .+.|++|+.+++.+|++
T Consensus 135 ~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~ 214 (309)
T 3syl_A 135 FIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAG 214 (309)
T ss_dssp EEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHH
T ss_pred EEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHH
Confidence 99999999865432 2345677888888864 47899999999887777788999999996 59999999999999999
Q ss_pred hhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCC--CchhHHHHHHHHHH
Q psy2887 166 GLQKKYEVHHGVEITDPAIVAASELSYRYISDRF--MPDKAIDLIDEAAA 213 (899)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~ll~~a~~ 213 (899)
.++.. .++.++++++..++..+.+...... ....+.++++.++.
T Consensus 215 ~~l~~----~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~ 260 (309)
T 3syl_A 215 HMLDD----QNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARL 260 (309)
T ss_dssp HHHHH----TTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHH----cCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHH
Confidence 88876 4567899999998887654322111 12345555655553
No 58
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.70 E-value=7.9e-17 Score=172.02 Aligned_cols=158 Identities=15% Similarity=0.157 Sum_probs=113.0
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHH---hcCCCE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDI 87 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~---~~~~~~ 87 (899)
+.+.++||+||||||||++|+++|+.+ +.+++.++++.+. +.+.|..+..++++|..+. +...|+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l----------~~~~i~v~~~~l~--~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 101 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAAEIIRKGNMC 101 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH----------TCCCEEEEHHHHH--CC---HHHHHHHHHHHHHHHHHTTSSCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEeHHHhh--hccCchhHHHHHHHHHHHHHHHhcCCCe
Confidence 455689999999999999999999999 8899999999887 5688999999999999883 245689
Q ss_pred EEEEccccccccCCCCC-----chhhHHHhhhhhhc---------------CCceEEEEecChhHHHHhhhcCHHHHh--
Q psy2887 88 IIFIDELHTMIGTGKVE-----GSIDAGNMLKPELS---------------RGELHCIGATTLNEYRQYIEKDAAFER-- 145 (899)
Q Consensus 88 iL~iDEi~~l~~~~~~~-----~~~~~~~~l~~~l~---------------~~~v~vI~at~~~~~~~~~~ld~al~~-- 145 (899)
||||||+|.+.+...+. ....+.+.|+..++ ...+++|+|||.++ .++++++|
T Consensus 102 vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~-----~ld~al~R~~ 176 (293)
T 3t15_A 102 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS-----TLYAPLIRDG 176 (293)
T ss_dssp CEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC-----C--CHHHHHH
T ss_pred EEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc-----cCCHHHhCCC
Confidence 99999999998744321 12245567777763 34689999999998 89999997
Q ss_pred cccc-ccccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcc
Q psy2887 146 RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYIS 196 (899)
Q Consensus 146 Rf~~-i~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (899)
||+. +. .|+.++|.+|++.++.. .+ ++ ...++.++.+|.+
T Consensus 177 R~d~~i~--~P~~~~r~~Il~~~~~~----~~--~~---~~~l~~~~~~~~~ 217 (293)
T 3t15_A 177 RMEKFYW--APTREDRIGVCTGIFRT----DN--VP---AEDVVKIVDNFPG 217 (293)
T ss_dssp HEEEEEE--CCCHHHHHHHHHHHHGG----GC--CC---HHHHHHHHHHSCS
T ss_pred CCceeEe--CcCHHHHHHHHHHhccC----CC--CC---HHHHHHHhCCCCc
Confidence 8886 54 57999999999977653 22 33 3445556666544
No 59
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.70 E-value=1.9e-16 Score=169.97 Aligned_cols=159 Identities=21% Similarity=0.394 Sum_probs=121.3
Q ss_pred ccCCChHHHHHHHHHHHHHh--------hcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 459 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~--------~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 459 (899)
.+++|++.+++.|...+... ..++ .+..++||+||||||||++|+++|+.+ +.+++.++++++..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~----~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGM----TPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLT 87 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC----CCCSEEEEECSSSSSHHHHHHHHHHHT---TCEEEEECHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC----CCCceEEEECCCCcCHHHHHHHHHHHh---CCCEEEEEhHHHHh
Confidence 56889999999999888653 1222 122369999999999999999999998 78999999987754
Q ss_pred ccchhhccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccCH--------------HHHHHHHHhhcCCceecCC
Q psy2887 460 KHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS--------------DVFNILLQILDDGRLTDNR 523 (899)
Q Consensus 460 ~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~--------------~~~~~Ll~~le~g~~~~~~ 523 (899)
. ++| ..+. +.++..+....++||||||+|.+.+ .+++.|+..|+.-.
T Consensus 88 ~-----~~g-------~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~----- 150 (301)
T 3cf0_A 88 M-----WFG-------ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS----- 150 (301)
T ss_dssp H-----HHT-------TCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC-----
T ss_pred h-----hcC-------chHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc-----
Confidence 3 233 2222 4566666777789999999997654 35788999998421
Q ss_pred CceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhh--ccCeEEEecCCCHHHHHHHHHHHH
Q psy2887 524 GRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQL 598 (899)
Q Consensus 524 g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~~~~~~i~~~~l 598 (899)
...+++||+|||.... +++.+++ ||+..+.|++++.++..+|++.++
T Consensus 151 ----~~~~v~vi~atn~~~~------------------------ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l 199 (301)
T 3cf0_A 151 ----TKKNVFIIGATNRPDI------------------------IDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 199 (301)
T ss_dssp ----TTSSEEEEEEESCGGG------------------------SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred ----CCCCEEEEEecCCccc------------------------cChHHhcCCccceEEecCCcCHHHHHHHHHHHH
Confidence 2357889999996432 5666776 999999999999999999987766
No 60
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.70 E-value=5.2e-17 Score=173.41 Aligned_cols=163 Identities=15% Similarity=0.176 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCc
Q psy2887 394 DEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGY 473 (899)
Q Consensus 394 ~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 473 (899)
+..++.+...+.+........+.|. .+||+||||||||++|+++|+.+ +.+++.++++++.+. |
T Consensus 13 ~~~~~~~~~~~~k~~l~~~~~~~p~-~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~~~l~~~------------~ 76 (293)
T 3t15_A 13 PAFMDKLVVHITKNFLKLPNIKVPL-ILGIWGGKGQGKSFQCELVFRKM---GINPIMMSAGELESG------------N 76 (293)
T ss_dssp HHHHHHHHHHHHHTTSCCTTCCCCS-EEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEHHHHHCC-------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCe-EEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeHHHhhhc------------c
Confidence 3444455554444444444444454 69999999999999999999999 899999999887543 4
Q ss_pred cccccc--chhhHHH----HhCCCEEEEEccccccCH-------------HHHHHHHHhhcCCceecCCC--ceEecCCe
Q psy2887 474 IGYEEG--GYLTEIV----RRKPYSLILLDEIEKANS-------------DVFNILLQILDDGRLTDNRG--RTINFRNT 532 (899)
Q Consensus 474 ~g~~~~--~~l~~~~----~~~~~~vl~lDEid~~~~-------------~~~~~Ll~~le~g~~~~~~g--~~~~~~~~ 532 (899)
+|..+. +.++..+ +...++||||||||++.+ .+++.|+++|++.......+ ......++
T Consensus 77 ~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v 156 (293)
T 3t15_A 77 AGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARV 156 (293)
T ss_dssp --HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCC
T ss_pred CchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCc
Confidence 444333 2233333 455789999999998875 36699999999655443222 33456789
Q ss_pred EEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHh--hccCeEEEecCCCHHHHHHHHHHHH
Q psy2887 533 IIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQL 598 (899)
Q Consensus 533 ~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~~~~~~i~~~~l 598 (899)
+||+|||.... ++++|+ +||+.++. . ++.++..+|++.++
T Consensus 157 ~vI~ttN~~~~------------------------ld~al~R~~R~d~~i~-~-P~~~~r~~Il~~~~ 198 (293)
T 3t15_A 157 PIIVTGNDFST------------------------LYAPLIRDGRMEKFYW-A-PTREDRIGVCTGIF 198 (293)
T ss_dssp CEEEECSSCCC--------------------------CHHHHHHHEEEEEE-C-CCHHHHHHHHHHHH
T ss_pred EEEEecCCccc------------------------CCHHHhCCCCCceeEe-C-cCHHHHHHHHHHhc
Confidence 99999996432 556677 69977665 3 39999999988665
No 61
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.70 E-value=5.6e-17 Score=153.95 Aligned_cols=143 Identities=12% Similarity=0.088 Sum_probs=111.8
Q ss_pred cCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccC
Q psy2887 389 RVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIG 468 (899)
Q Consensus 389 ~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g 468 (899)
.++|++.+++.+...+...... ..++||+||||||||++|+++++.....+.+|+ ++|+.+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~-------~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~-------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSET-------DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA-------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTC-------CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS--------
T ss_pred CceeCCHHHHHHHHHHHHHhCC-------CCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc--------
Confidence 5789999999999988765411 126999999999999999999999877788999 999876543
Q ss_pred CCCCcccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhh
Q psy2887 469 APPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEM 548 (899)
Q Consensus 469 ~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~ 548 (899)
......+..+.+++||||||+.+++..|..|+.+|+. ...++.+|+|||.+...+..
T Consensus 66 -----------~~~~~~~~~a~~g~l~ldei~~l~~~~q~~Ll~~l~~-----------~~~~~~~I~~t~~~~~~~~~- 122 (145)
T 3n70_A 66 -----------PQLNDFIALAQGGTLVLSHPEHLTREQQYHLVQLQSQ-----------EHRPFRLIGIGDTSLVELAA- 122 (145)
T ss_dssp -----------SCHHHHHHHHTTSCEEEECGGGSCHHHHHHHHHHHHS-----------SSCSSCEEEEESSCHHHHHH-
T ss_pred -----------hhhhcHHHHcCCcEEEEcChHHCCHHHHHHHHHHHhh-----------cCCCEEEEEECCcCHHHHHH-
Confidence 1234445555678999999999999999999999954 23467899999988775443
Q ss_pred hcCcHHHHHHHHHHHHhhcCChhHhhccCe-EEEecCCC
Q psy2887 549 EKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLN 586 (899)
Q Consensus 549 ~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~ 586 (899)
...|+++|+.|+.. .|.++|+.
T Consensus 123 ----------------~~~~~~~L~~rl~~~~i~lPpLR 145 (145)
T 3n70_A 123 ----------------SNHIIAELYYCFAMTQIACLPLT 145 (145)
T ss_dssp ----------------HSCCCHHHHHHHHHHEEECCCCC
T ss_pred ----------------cCCCCHHHHHHhcCCEEeCCCCC
Confidence 45799999999964 68888863
No 62
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.69 E-value=1.1e-16 Score=159.28 Aligned_cols=146 Identities=61% Similarity=1.095 Sum_probs=123.4
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
....+++|+||||||||++|+++++.+.....|....+..++.+++..+..+..+.+.....+..++..+....++.|||
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ 120 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMF 120 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEE
Confidence 44678999999999999999999999987777777778899999988887666677888888888888887666788999
Q ss_pred EccccccccCCC-CCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhccccccccCCC
Q psy2887 91 IDELHTMIGTGK-VEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPD 156 (899)
Q Consensus 91 iDEi~~l~~~~~-~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~ 156 (899)
|||++.+...+. .....++.+.|+..++.+.+.+|++||..++.....+++++.+||..+.++.|+
T Consensus 121 iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 121 IDEIHTVVGAGAVAEGALDAGNILKPMLARGELRCIGATTVSEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp ETTGGGGSSSSSSCTTSCCTHHHHHHHHHTTCSCEEEEECHHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred EeCHHHhcccccccccchHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhccHHHHHhcCcccCCCCC
Confidence 999999986544 333456778888888999999999999998777778999999999999999885
No 63
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.69 E-value=2.2e-16 Score=176.16 Aligned_cols=182 Identities=19% Similarity=0.281 Sum_probs=132.0
Q ss_pred ccCCChHHHHHHHHHHHHHhhcC---CCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchh
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSG---LSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 464 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~---~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 464 (899)
.+++|++.+++.|...+...... +.....+..++||+||||||||++|+++|+.+ +.+|+.++++++...
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~~~---- 187 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NATFFNISAASLTSK---- 187 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TCEEEEECSCCC-------
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cCcEEEeeHHHhhcc----
Confidence 67899999999999888543211 00111233479999999999999999999998 899999999887653
Q ss_pred hccCCCCCccccccc--chhhHHHHhCCCEEEEEcccccc-----------CHHHHHHHHHhhcCCceecCCCceEecCC
Q psy2887 465 RLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKA-----------NSDVFNILLQILDDGRLTDNRGRTINFRN 531 (899)
Q Consensus 465 ~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~-----------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 531 (899)
|+|..+. ..++..+....++||||||||.+ ...+++.|+..++...- ....+
T Consensus 188 --------~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~~ 252 (389)
T 3vfd_A 188 --------YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQS-------AGDDR 252 (389)
T ss_dssp ------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC------------C
T ss_pred --------ccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccc-------cCCCC
Confidence 3333332 44666677778899999999988 34678888888874211 11256
Q ss_pred eEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcc
Q psy2887 532 TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 611 (899)
Q Consensus 532 ~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~ 611 (899)
++||+|||... .+++.+++||+.++.|.+++.+++.+|+...+. ..+
T Consensus 253 v~vI~atn~~~------------------------~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~-------~~~-- 299 (389)
T 3vfd_A 253 VLVMGATNRPQ------------------------ELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLC-------KQG-- 299 (389)
T ss_dssp EEEEEEESCGG------------------------GCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHT-------TSC--
T ss_pred EEEEEecCCch------------------------hcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHH-------hcC--
Confidence 78999999633 367789999998999999999999999877662 233
Q ss_pred eeecHHHHHHHHh
Q psy2887 612 LKISKAALKKISN 624 (899)
Q Consensus 612 ~~~~~~~~~~L~~ 624 (899)
..++++++..|+.
T Consensus 300 ~~l~~~~~~~la~ 312 (389)
T 3vfd_A 300 SPLTQKELAQLAR 312 (389)
T ss_dssp CCSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 5678888888887
No 64
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.69 E-value=2.9e-16 Score=172.77 Aligned_cols=195 Identities=17% Similarity=0.230 Sum_probs=139.5
Q ss_pred ccCCChHHHHHHHHHHHHHhhcC---CCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchh
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSG---LSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 464 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~---~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 464 (899)
.+++|++.+++.|...+...... +.....+..++||+||||||||++|+++|+.+ +.+++.++++++...
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~l~~~---- 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISASSLTSK---- 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGGGGCCS----
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehHHhhcc----
Confidence 57899999999999988652110 00011223379999999999999999999998 889999999877543
Q ss_pred hccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccCH-----------HHHHHHHHhhcCCceecCCCceEecCC
Q psy2887 465 RLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS-----------DVFNILLQILDDGRLTDNRGRTINFRN 531 (899)
Q Consensus 465 ~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~-----------~~~~~Ll~~le~g~~~~~~g~~~~~~~ 531 (899)
+.|..+. +.++..+....++||||||||.+.+ .+++.|+..++..... ...+
T Consensus 157 --------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~-------~~~~ 221 (357)
T 3d8b_A 157 --------WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTS-------SEDR 221 (357)
T ss_dssp --------STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC-----------CCCC
T ss_pred --------ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccccc-------CCCC
Confidence 3333222 4456666777789999999988743 5678888888853211 1256
Q ss_pred eEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcc
Q psy2887 532 TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 611 (899)
Q Consensus 532 ~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~ 611 (899)
++||+|||... .+.+.+++||+..+.+++++.++..+++...+. ..+
T Consensus 222 v~vI~atn~~~------------------------~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~-------~~~-- 268 (357)
T 3d8b_A 222 ILVVGATNRPQ------------------------EIDEAARRRLVKRLYIPLPEASARKQIVINLMS-------KEQ-- 268 (357)
T ss_dssp EEEEEEESCGG------------------------GBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHH-------TSC--
T ss_pred EEEEEecCChh------------------------hCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHh-------hcC--
Confidence 78899998633 256779999998999999999999999877663 223
Q ss_pred eeecHHHHHHHHhcccCccccccccccc
Q psy2887 612 LKISKAALKKISNIGFDLIYGARDVHGC 639 (899)
Q Consensus 612 ~~~~~~~~~~L~~~~~~~~~~~~di~~~ 639 (899)
..++++.++.+++.. ..|..+||...
T Consensus 269 ~~l~~~~l~~la~~t--~G~s~~dl~~l 294 (357)
T 3d8b_A 269 CCLSEEEIEQIVQQS--DAFSGADMTQL 294 (357)
T ss_dssp BCCCHHHHHHHHHHT--TTCCHHHHHHH
T ss_pred CCccHHHHHHHHHHc--CCCCHHHHHHH
Confidence 567888899888732 33444555544
No 65
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.68 E-value=3e-16 Score=165.47 Aligned_cols=179 Identities=23% Similarity=0.338 Sum_probs=127.9
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEEc
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFID 92 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~iD 92 (899)
+.+++|+||||||||||++++|+.+ +..++.++...+. ..+.|+.++.+..+|..+.. ..|+++|+|
T Consensus 44 ~~GvlL~Gp~GtGKTtLakala~~~----------~~~~i~i~g~~l~--~~~~~~~~~~i~~vf~~a~~-~~p~i~~~D 110 (274)
T 2x8a_A 44 PAGVLLAGPPGCGKTLLAKAVANES----------GLNFISVKGPELL--NMYVGESERAVRQVFQRAKN-SAPCVIFFD 110 (274)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT----------TCEEEEEETTTTC--SSTTHHHHHHHHHHHHHHHH-TCSEEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHc----------CCCEEEEEcHHHH--hhhhhHHHHHHHHHHHHHHh-cCCCeEeee
Confidence 4459999999999999999999988 6678888876665 45778888899999998863 358999999
Q ss_pred cccccccCCCCC---chhhHHHhhhhhhc----CCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCHHHHHH
Q psy2887 93 ELHTMIGTGKVE---GSIDAGNMLKPELS----RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETIS 162 (899)
Q Consensus 93 Ei~~l~~~~~~~---~~~~~~~~l~~~l~----~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~~e~~~ 162 (899)
|++.+...+... ......+.+...|+ +..++++++||.++ .+|++++| ||+. |.++.|+.++|.+
T Consensus 111 eid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~-----~LD~al~r~gRfd~~i~~~~P~~~~r~~ 185 (274)
T 2x8a_A 111 EVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPD-----IIDPAILRPGRLDKTLFVGLPPPADRLA 185 (274)
T ss_dssp TCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGG-----GSCHHHHSTTSSCEEEECCSCCHHHHHH
T ss_pred hhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChh-----hCCHhhcCcccCCeEEEeCCcCHHHHHH
Confidence 999987643221 11233444555553 34688899999998 78999999 9996 9999999999999
Q ss_pred HHHhhhhhhhcccCCCC-CHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhh
Q psy2887 163 ILRGLQKKYEVHHGVEI-TDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 215 (899)
Q Consensus 163 il~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~ 215 (899)
||+.+++.... ... .+..+..++..+. .+.+.++++..++.+|+..+
T Consensus 186 il~~~~~~~~~---~~~~~~~~~~~la~~~~---~~g~sgadl~~l~~~a~~~a 233 (274)
T 2x8a_A 186 ILKTITKNGTK---PPLDADVNLEAIAGDLR---CDCYTGADLSALVREASICA 233 (274)
T ss_dssp HHHHHTTTTBT---TBBCTTCCHHHHHTCSG---GGSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccC---CCCccccCHHHHHHhhc---cCCcCHHHHHHHHHHHHHHH
Confidence 99988754211 111 1222444554322 12344578888888887543
No 66
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.68 E-value=4.5e-16 Score=163.45 Aligned_cols=177 Identities=20% Similarity=0.306 Sum_probs=130.6
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEE
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFI 91 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~i 91 (899)
.+.+++|+||||||||++|+++|+.+ +.+++.+++..+. ..+.|..+..++.+|..+.. ..|+++||
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~~~----------~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~a~~-~~~~il~i 110 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAGEA----------KVPFFTISGSDFV--EMFVGVGASRVRDMFEQAKK-AAPCIIFI 110 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH----------TCCEEEECSCSST--TSCCCCCHHHHHHHHHHHHT-TCSEEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHc----------CCCEEEEeHHHHH--HHhhhhhHHHHHHHHHHHHH-cCCeeehh
Confidence 45679999999999999999999988 6678888877665 44667778889999998864 45899999
Q ss_pred ccccccccCCCCC---ch---hhHHHhhhhhhc----CCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCHH
Q psy2887 92 DELHTMIGTGKVE---GS---IDAGNMLKPELS----RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIE 158 (899)
Q Consensus 92 DEi~~l~~~~~~~---~~---~~~~~~l~~~l~----~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~~ 158 (899)
||+|.+....... +. ....+.++..++ ...+++|++||.++ .+++++.+ ||+. +.++.|+.+
T Consensus 111 Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~-----~l~~~l~r~~rf~~~i~i~~P~~~ 185 (257)
T 1lv7_A 111 DEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPD-----VLDPALLRPGRFDRQVVVGLPDVR 185 (257)
T ss_dssp TTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTT-----TSCGGGGSTTSSCEEEECCCCCHH
T ss_pred hhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCch-----hCCHHHcCCCcCCeEEEeCCCCHH
Confidence 9999998754321 11 123344444443 46799999999998 89999998 9986 889999999
Q ss_pred HHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhh
Q psy2887 159 ETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIK 216 (899)
Q Consensus 159 e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~ 216 (899)
+|.+|++.+++...... +..+..++..+.+| .+.++..++..|+..+.
T Consensus 186 ~r~~il~~~~~~~~l~~-----~~~~~~la~~~~G~-----~~~dl~~l~~~a~~~a~ 233 (257)
T 1lv7_A 186 GREQILKVHMRRVPLAP-----DIDAAIIARGTPGF-----SGADLANLVNEAALFAA 233 (257)
T ss_dssp HHHHHHHHHHTTSCBCT-----TCCHHHHHHTCTTC-----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCc-----cccHHHHHHHcCCC-----CHHHHHHHHHHHHHHHH
Confidence 99999988876543221 12234455555443 44677778887776554
No 67
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.68 E-value=5.9e-16 Score=168.61 Aligned_cols=189 Identities=14% Similarity=0.178 Sum_probs=144.5
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhcc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 467 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (899)
.+++|++++++.+...+.... .| ..+|++||||||||++|+++|+.+ +.+++.++++..... .+.
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-------~~-~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~~~~~-~i~--- 90 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-------IP-HIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSDCKID-FVR--- 90 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-------CC-SEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTTCCHH-HHH---
T ss_pred HHHhCcHHHHHHHHHHHHcCC-------CC-eEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcccccCHH-HHH---
Confidence 678899999999999888432 12 258889999999999999999999 788999887664311 111
Q ss_pred CCCCCcccccccchhhHHHHh----CCCEEEEEccccccC-HHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCCh
Q psy2887 468 GAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKAN-SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGS 542 (899)
Q Consensus 468 g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~-~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~ 542 (899)
..+...... ..++||||||+|.+. ...++.|++.+++ ...++.||+|||...
T Consensus 91 ------------~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~-----------~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 91 ------------GPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEA-----------YSSNCSIIITANNID 147 (324)
T ss_dssp ------------THHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHH-----------HGGGCEEEEEESSGG
T ss_pred ------------HHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEeCCcc
Confidence 112222222 146799999999999 9999999999996 235788999999633
Q ss_pred hhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecH-HHHHH
Q psy2887 543 DKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISK-AALKK 621 (899)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~-~~~~~ 621 (899)
.+.+.+.+|| .++.|.+++.+++.+|+...+..+...+...+ +.+++ +++++
T Consensus 148 ------------------------~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~--~~~~~~~~~~~ 200 (324)
T 3u61_B 148 ------------------------GIIKPLQSRC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEG--IAIADMKVVAA 200 (324)
T ss_dssp ------------------------GSCTTHHHHS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHT--CCBSCHHHHHH
T ss_pred ------------------------ccCHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcC--CCCCcHHHHHH
Confidence 3678899999 68999999999999999998888887777666 67778 99999
Q ss_pred HHhcccCcccccccccccHHHHHHHH
Q psy2887 622 ISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 622 L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
+++. .-||+......|+.+.
T Consensus 201 l~~~------~~gd~R~a~~~L~~~~ 220 (324)
T 3u61_B 201 LVKK------NFPDFRKTIGELDSYS 220 (324)
T ss_dssp HHHH------TCSCTTHHHHHHHHHG
T ss_pred HHHh------CCCCHHHHHHHHHHHh
Confidence 9883 2367666655555443
No 68
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.67 E-value=7.1e-16 Score=165.75 Aligned_cols=195 Identities=18% Similarity=0.282 Sum_probs=136.7
Q ss_pred ccCCChHHHHHHHHHHHHHhhcC---CCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchh
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSG---LSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 464 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~---~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 464 (899)
.+++|++.+++.+...+...... +.....+..++||+||||||||++|+++|+.+ +.+++.++++++...
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~---- 93 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SATFLNISAASLTSK---- 93 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEESTTTSSS----
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeHHHHhhc----
Confidence 57889999999999887553210 00001223379999999999999999999998 889999999876543
Q ss_pred hccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccC-----------HHHHHHHHHhhcCCceecCCCceEecCC
Q psy2887 465 RLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRTINFRN 531 (899)
Q Consensus 465 ~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 531 (899)
+.|.... +.++..+....++||||||+|.+. ...++.|+..++..... ....+
T Consensus 94 --------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~------~~~~~ 159 (297)
T 3b9p_A 94 --------YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN------PDGDR 159 (297)
T ss_dssp --------SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------------C
T ss_pred --------ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc------CCCCc
Confidence 2332222 445666677788999999999874 45677888888752211 01245
Q ss_pred eEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcc
Q psy2887 532 TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 611 (899)
Q Consensus 532 ~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~ 611 (899)
++||++||... .+.+.+++||+..+.+++++.++...|+...+. ..+
T Consensus 160 v~vi~~tn~~~------------------------~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~-------~~~-- 206 (297)
T 3b9p_A 160 IVVLAATNRPQ------------------------ELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQ-------KQG-- 206 (297)
T ss_dssp EEEEEEESCGG------------------------GBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHG-------GGS--
T ss_pred EEEEeecCChh------------------------hCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHH-------hcC--
Confidence 78899999643 267788999999999999999999988876663 222
Q ss_pred eeecHHHHHHHHhcccCcccccccccc
Q psy2887 612 LKISKAALKKISNIGFDLIYGARDVHG 638 (899)
Q Consensus 612 ~~~~~~~~~~L~~~~~~~~~~~~di~~ 638 (899)
..+++++++.++.. ...+..+||..
T Consensus 207 ~~~~~~~~~~la~~--~~g~~~~~l~~ 231 (297)
T 3b9p_A 207 SPLDTEALRRLAKI--TDGYSGSDLTA 231 (297)
T ss_dssp CCSCHHHHHHHHHH--TTTCCHHHHHH
T ss_pred CCCCHHHHHHHHHH--cCCCCHHHHHH
Confidence 45788888888873 23333345544
No 69
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.67 E-value=2.9e-16 Score=176.66 Aligned_cols=188 Identities=16% Similarity=0.291 Sum_probs=131.7
Q ss_pred ccCCChHHHH---HHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchh
Q psy2887 388 KRVVGQDEAI---SAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 464 (899)
Q Consensus 388 ~~v~gq~~~~---~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 464 (899)
.+++||++++ ..+...+..... .+++|+||||||||++|++||+.+ +.+++.+++......
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~---------~~vLL~GppGtGKTtlAr~ia~~~---~~~f~~l~a~~~~~~---- 89 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHL---------HSMILWGPPGTGKTTLAEVIARYA---NADVERISAVTSGVK---- 89 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCC---------CEEEEECSTTSSHHHHHHHHHHHT---TCEEEEEETTTCCHH----
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCC---------cEEEEECCCCCcHHHHHHHHHHHh---CCCeEEEEeccCCHH----
Confidence 5789999999 788888876442 379999999999999999999998 778888776432111
Q ss_pred hccCCCCCcccccccchhhHHH----HhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCC
Q psy2887 465 RLIGAPPGYIGYEEGGYLTEIV----RRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNL 540 (899)
Q Consensus 465 ~l~g~~~~~~g~~~~~~l~~~~----~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~ 540 (899)
..+.++..+ ....++|||||||+.++...|+.|+..++++ .+++|++|+.
T Consensus 90 -------------~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~-------------~v~lI~att~ 143 (447)
T 3pvs_A 90 -------------EIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG-------------TITFIGATTE 143 (447)
T ss_dssp -------------HHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT-------------SCEEEEEESS
T ss_pred -------------HHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC-------------ceEEEecCCC
Confidence 111122111 2345789999999999999999999999973 3567777764
Q ss_pred ChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHH
Q psy2887 541 GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALK 620 (899)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 620 (899)
... ..+.+.|++|| .++.|.|++.+++..++...+.+....+. ...+.+++++++
T Consensus 144 n~~----------------------~~l~~aL~sR~-~v~~l~~l~~edi~~il~~~l~~~~~~~~--~~~~~i~~~al~ 198 (447)
T 3pvs_A 144 NPS----------------------FELNSALLSRA-RVYLLKSLSTEDIEQVLTQAMEDKTRGYG--GQDIVLPDETRR 198 (447)
T ss_dssp CGG----------------------GSSCHHHHTTE-EEEECCCCCHHHHHHHHHHHHHCTTTSST--TSSEECCHHHHH
T ss_pred Ccc----------------------cccCHHHhCce-eEEeeCCcCHHHHHHHHHHHHHHHhhhhc--cccCcCCHHHHH
Confidence 432 24788899999 68999999999999999888754222111 134789999999
Q ss_pred HHHhcccCcccccccccccHHHHHHHHH
Q psy2887 621 KISNIGFDLIYGARDVHGCKKSLSILLK 648 (899)
Q Consensus 621 ~L~~~~~~~~~~~~di~~~~~~l~~~l~ 648 (899)
.|++. + -||+......|+.++.
T Consensus 199 ~L~~~---~---~Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 199 AIAEL---V---NGDARRALNTLEMMAD 220 (447)
T ss_dssp HHHHH---H---CSCHHHHHHHHHHHHH
T ss_pred HHHHH---C---CCCHHHHHHHHHHHHH
Confidence 99983 2 3555555444666653
No 70
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.66 E-value=1.8e-15 Score=159.36 Aligned_cols=165 Identities=21% Similarity=0.276 Sum_probs=113.2
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCC---CCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchh
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSD---AKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 464 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~---~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 464 (899)
++++|++.+++.+.+.+......-.. ...+..++||+||||||||++|+++|+.+ +.+++.++++++...
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~---- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGAEFVEV---- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETTTTSSS----
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechHHHHhh----
Confidence 67899999999998877654321100 01222369999999999999999999999 889999999887532
Q ss_pred hccCCCCCcccccc--cchhhHHHHhCCCEEEEEccccccC------------HH---HHHHHHHhhcCCceecCCCceE
Q psy2887 465 RLIGAPPGYIGYEE--GGYLTEIVRRKPYSLILLDEIEKAN------------SD---VFNILLQILDDGRLTDNRGRTI 527 (899)
Q Consensus 465 ~l~g~~~~~~g~~~--~~~l~~~~~~~~~~vl~lDEid~~~------------~~---~~~~Ll~~le~g~~~~~~g~~~ 527 (899)
+.|... .+.++..+....++||||||+|.+. .. .++.|+..++...
T Consensus 79 --------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~--------- 141 (262)
T 2qz4_A 79 --------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG--------- 141 (262)
T ss_dssp --------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC---------
T ss_pred --------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC---------
Confidence 222211 1345555666678999999999883 22 3445555555310
Q ss_pred ecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhh--ccCeEEEecCCCHHHHHHHHHHHHHH
Q psy2887 528 NFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNI 600 (899)
Q Consensus 528 ~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~~~~~~i~~~~l~~ 600 (899)
...++++|+|||.... +++.+++ ||+..+.|++++.++..+|++.++..
T Consensus 142 ~~~~~~vi~~tn~~~~------------------------ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~ 192 (262)
T 2qz4_A 142 TTDHVIVLASTNRADI------------------------LDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKS 192 (262)
T ss_dssp TTCCEEEEEEESCGGG------------------------GGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCChhh------------------------cCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHh
Confidence 1246788999986432 4566776 99999999999999999998887743
No 71
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.65 E-value=1.2e-15 Score=171.46 Aligned_cols=159 Identities=23% Similarity=0.374 Sum_probs=120.0
Q ss_pred ccCCChHHHHHHHHHHHHHhhc-------CCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRS-------GLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEK 460 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~-------~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~ 460 (899)
.+|+|++.+++.+.+.+..... +.. .|. ++||+||||||||++|+++|..+ +.+|+.++++++...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~---~p~-gvLL~GppGtGKT~Laraia~~~---~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGAR---MPK-GILLVGPPGTGKTLLARAVAGEA---NVPFFHISGSDFVEL 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCC---CCS-EEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGTTTC
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCC---CCC-eEEEECCCCCCHHHHHHHHHHHc---CCCeeeCCHHHHHHH
Confidence 5788999999999888765431 211 222 59999999999999999999999 889999999887653
Q ss_pred cchhhccCCCCCcccccc--cchhhHHHHhCCCEEEEEccccccCH--------------HHHHHHHHhhcCCceecCCC
Q psy2887 461 HSISRLIGAPPGYIGYEE--GGYLTEIVRRKPYSLILLDEIEKANS--------------DVFNILLQILDDGRLTDNRG 524 (899)
Q Consensus 461 ~~~~~l~g~~~~~~g~~~--~~~l~~~~~~~~~~vl~lDEid~~~~--------------~~~~~Ll~~le~g~~~~~~g 524 (899)
++|... .+.++..+....++||||||+|.+.+ ..++.|+..|+.-.
T Consensus 89 ------------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~------ 150 (476)
T 2ce7_A 89 ------------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD------ 150 (476)
T ss_dssp ------------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC------
T ss_pred ------------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC------
Confidence 233222 24566667777889999999998754 36788888887310
Q ss_pred ceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHh--hccCeEEEecCCCHHHHHHHHHHHH
Q psy2887 525 RTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQL 598 (899)
Q Consensus 525 ~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~~~~~~i~~~~l 598 (899)
...+++||++||.+. .++|.++ +||+..+.+++|+.++..+|++.++
T Consensus 151 ---~~~~viVIaaTn~~~------------------------~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~ 199 (476)
T 2ce7_A 151 ---SKEGIIVMAATNRPD------------------------ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHT 199 (476)
T ss_dssp ---GGGTEEEEEEESCGG------------------------GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred ---CCCCEEEEEecCChh------------------------hhchhhcccCcceeEeecCCCCHHHHHHHHHHHH
Confidence 125688999999642 2456666 4999999999999999999987665
No 72
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.65 E-value=9.7e-16 Score=173.56 Aligned_cols=207 Identities=16% Similarity=0.198 Sum_probs=140.6
Q ss_pred HHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccc
Q psy2887 376 REKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMS 455 (899)
Q Consensus 376 ~~~l~~l~~~l~~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~ 455 (899)
...+..+...+...++|++++++.+..++.... ++||+||||||||++|+++|+.+ +.+.+|..+++.
T Consensus 10 ~~~~~~l~~~l~~~ivGq~~~i~~l~~al~~~~-----------~VLL~GpPGtGKT~LAraLa~~l-~~~~~f~~~~~~ 77 (500)
T 3nbx_X 10 AERISRLSSSLEKGLYERSHAIRLCLLAALSGE-----------SVFLLGPPGIAKSLIARRLKFAF-QNARAFEYLMTR 77 (500)
T ss_dssp HHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTC-----------EEEEECCSSSSHHHHHHHGGGGB-SSCCEEEEECCT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCC-----------eeEeecCchHHHHHHHHHHHHHH-hhhhHHHHHHHh
Confidence 345677888899999999999999888876532 79999999999999999999988 334466666554
Q ss_pred ccccccchhhccCCCCCcccccccchhhHHHHh--CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeE
Q psy2887 456 EFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRR--KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTI 533 (899)
Q Consensus 456 ~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~--~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~ 533 (899)
- .. .+.++|...++.... .+.+...... ..++|||||||+++++.+++.|+++|+++.++. .|........+
T Consensus 78 ~-~t---~~dL~G~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i-~G~~~~~~~~~ 151 (500)
T 3nbx_X 78 F-ST---PEEVFGPLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRN-GAHVEKIPMRL 151 (500)
T ss_dssp T-CC---HHHHHCCBC-----------CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEEC-SSSEEECCCCE
T ss_pred c-CC---HHHhcCcccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccC-CCCcCCcchhh
Confidence 2 11 245555432211000 0111100000 024699999999999999999999999998876 45556666667
Q ss_pred EEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCH-HHHHHHHHHHH--------------
Q psy2887 534 IVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNR-KNILSIANIQL-------------- 598 (899)
Q Consensus 534 iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~-~~~~~i~~~~l-------------- 598 (899)
+|+|||..++ ...+.+++++||...+.+++++. ++...|+....
T Consensus 152 iI~ATN~lpe---------------------~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~ 210 (500)
T 3nbx_X 152 LVAASNELPE---------------------ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVT 210 (500)
T ss_dssp EEEEESSCCC---------------------TTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBC
T ss_pred hhhccccCCC---------------------ccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceec
Confidence 7888885333 12356789999988899999987 66777776432
Q ss_pred ----HHHHHHHHhcCcceeecHHHHHHHHhc
Q psy2887 599 ----NILKNKLLKMNMDLKISKAALKKISNI 625 (899)
Q Consensus 599 ----~~~~~~~~~~~~~~~~~~~~~~~L~~~ 625 (899)
..+.... ..+.+++++.+++++.
T Consensus 211 ~e~l~~~~~~~----~~v~v~d~v~e~i~~l 237 (500)
T 3nbx_X 211 DEEYERWQKEI----GEITLPDHVFELIFML 237 (500)
T ss_dssp HHHHHHHHHHH----TTCBCCHHHHHHHHHH
T ss_pred HHHHHHHHhcC----CcccCchHHHHHHHHH
Confidence 1111111 1367888888888763
No 73
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.65 E-value=1.1e-15 Score=166.81 Aligned_cols=205 Identities=21% Similarity=0.266 Sum_probs=138.4
Q ss_pred HHHHHHHHhhccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccc
Q psy2887 378 KLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF 457 (899)
Q Consensus 378 ~l~~l~~~l~~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~ 457 (899)
.+.++...+...++||+.+++.+..++.... ++||+||||||||++|+++|+.+ +.++..+++...
T Consensus 17 ~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~-----------~vll~G~pGtGKT~la~~la~~~---~~~~~~i~~~~~ 82 (331)
T 2r44_A 17 KIKEVIDEVGKVVVGQKYMINRLLIGICTGG-----------HILLEGVPGLAKTLSVNTLAKTM---DLDFHRIQFTPD 82 (331)
T ss_dssp HHHHHHHHHTTTCCSCHHHHHHHHHHHHHTC-----------CEEEESCCCHHHHHHHHHHHHHT---TCCEEEEECCTT
T ss_pred HHHHHHHHhccceeCcHHHHHHHHHHHHcCC-----------eEEEECCCCCcHHHHHHHHHHHh---CCCeEEEecCCC
Confidence 4566778888999999999999988876521 69999999999999999999998 778888887532
Q ss_pred ccccchhhccCCCCCcccccccchhhHHHHhC--CCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEec-CCeEE
Q psy2887 458 IEKHSISRLIGAPPGYIGYEEGGYLTEIVRRK--PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINF-RNTII 534 (899)
Q Consensus 458 ~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~--~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~-~~~~i 534 (899)
... ..++|... + +...+. .. .... ..+||||||++.+++..++.|++.|+++.+... |..... .+.++
T Consensus 83 ~~~---~~l~g~~~-~-~~~~~~-~~--~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~-g~~~~~~~~~~v 153 (331)
T 2r44_A 83 LLP---SDLIGTMI-Y-NQHKGN-FE--VKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIG-DTTYPLDNPFLV 153 (331)
T ss_dssp CCH---HHHHEEEE-E-ETTTTE-EE--EEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEET-TEEEECCSSCEE
T ss_pred CCh---hhcCCcee-e-cCCCCc-eE--eccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeC-CEEEECCCCEEE
Confidence 211 11222110 0 000000 00 0001 137999999999999999999999999887763 444433 45667
Q ss_pred EEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHH-------------
Q psy2887 535 VMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNIL------------- 601 (899)
Q Consensus 535 I~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~------------- 601 (899)
|+|+|.... .. ...+++.|++||+..+.+.+++.++..+|+...+...
T Consensus 154 iat~np~~~--~~-----------------~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~ 214 (331)
T 2r44_A 154 LATQNPVEQ--EG-----------------TYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKND 214 (331)
T ss_dssp EEEECTTCC--SC-----------------CCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHH
T ss_pred EEecCCCcc--cC-----------------cccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHH
Confidence 777773221 00 1237889999998789999999999999988765321
Q ss_pred HHHHHhcCcceeecHHHHHHHHh
Q psy2887 602 KNKLLKMNMDLKISKAALKKISN 624 (899)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~L~~ 624 (899)
..........+.+++++++++.+
T Consensus 215 i~~~~~~~~~v~~~~~~~~~i~~ 237 (331)
T 2r44_A 215 VLEIRNEINKVTISESLEKYIIE 237 (331)
T ss_dssp HHHHHHHHHTCBCCHHHHHHHHH
T ss_pred HHHHHHHhccCCCCHHHHHHHHH
Confidence 00000001136678888888765
No 74
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.64 E-value=2.2e-15 Score=158.18 Aligned_cols=191 Identities=19% Similarity=0.315 Sum_probs=129.3
Q ss_pred ccCCChHHHHHHHHHHHHHhhcC--CCC-CCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchh
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSG--LSD-AKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 464 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~--~~~-~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 464 (899)
.+++|++.+++.+...+...... +.. ...+..+++|+||||||||++|+++|+.+ +.+++.++++++...
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~i~~~~~~~~---- 84 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVEM---- 84 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCEEEECSCSSTTS----
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCCEEEEeHHHHHHH----
Confidence 67889999999998876543210 000 00112269999999999999999999998 778999998877543
Q ss_pred hccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccCH--------------HHHHHHHHhhcCCceecCCCceEe
Q psy2887 465 RLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS--------------DVFNILLQILDDGRLTDNRGRTIN 528 (899)
Q Consensus 465 ~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~--------------~~~~~Ll~~le~g~~~~~~g~~~~ 528 (899)
+.|.... +.++..+....++++||||+|.+.+ ..++.++..++.-. .
T Consensus 85 --------~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~ 147 (257)
T 1lv7_A 85 --------FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE---------G 147 (257)
T ss_dssp --------CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC---------S
T ss_pred --------hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc---------c
Confidence 2222221 3455556666679999999987643 45677888777411 2
Q ss_pred cCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhh--ccCeEEEecCCCHHHHHHHHHHHHHHHHHHHH
Q psy2887 529 FRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNILKNKLL 606 (899)
Q Consensus 529 ~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~ 606 (899)
..++++|+|||.... +.+.+++ ||+..+.|.+|+.++..+|++.++.+
T Consensus 148 ~~~~~vI~~tn~~~~------------------------l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~------ 197 (257)
T 1lv7_A 148 NEGIIVIAATNRPDV------------------------LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR------ 197 (257)
T ss_dssp SSCEEEEEEESCTTT------------------------SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT------
T ss_pred CCCEEEEEeeCCchh------------------------CCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhc------
Confidence 356789999996532 4556665 99999999999999999988766522
Q ss_pred hcCcceeecHHH-HHHHHhcccCccccccccccc
Q psy2887 607 KMNMDLKISKAA-LKKISNIGFDLIYGARDVHGC 639 (899)
Q Consensus 607 ~~~~~~~~~~~~-~~~L~~~~~~~~~~~~di~~~ 639 (899)
. .+++++ ...++. ..+.|+.+||...
T Consensus 198 -~----~l~~~~~~~~la~--~~~G~~~~dl~~l 224 (257)
T 1lv7_A 198 -V----PLAPDIDAAIIAR--GTPGFSGADLANL 224 (257)
T ss_dssp -S----CBCTTCCHHHHHH--TCTTCCHHHHHHH
T ss_pred -C----CCCccccHHHHHH--HcCCCCHHHHHHH
Confidence 1 222332 344443 2233578888877
No 75
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.64 E-value=3.9e-15 Score=162.19 Aligned_cols=178 Identities=13% Similarity=0.237 Sum_probs=135.4
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhcc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 467 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (899)
..++|++.++..+...+......- .+..+++|+||||||||++|+++|+.+ +.+++.++++.+...
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~----~~~~~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~~~~------- 77 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARK----EPLEHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGPAIEKP------- 77 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHC----SCCCCCEEECCTTCCCHHHHHHHHHHH---TCCEEEECTTTCCSH-------
T ss_pred HHhhCHHHHHHHHHHHHHHHHccC----CCCCcEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccccCCh-------
Confidence 568899999999988887643210 112369999999999999999999998 788988888766332
Q ss_pred CCCCCcccccccchhhHHHHh--CCCEEEEEccccccCHHHHHHHHHhhcCCceecCC-------CceEecCCeEEEEec
Q psy2887 468 GAPPGYIGYEEGGYLTEIVRR--KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNR-------GRTINFRNTIIVMTS 538 (899)
Q Consensus 468 g~~~~~~g~~~~~~l~~~~~~--~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~-------g~~~~~~~~~iI~ts 538 (899)
..+...+.. +.+++|||||++.+++..++.|+..++++.+..-. .......++++|++|
T Consensus 78 ------------~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t 145 (324)
T 1hqc_A 78 ------------GDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGAT 145 (324)
T ss_dssp ------------HHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEE
T ss_pred ------------HHHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeC
Confidence 123334443 45689999999999999999999999987654211 112234578899999
Q ss_pred CCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHH
Q psy2887 539 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAA 618 (899)
Q Consensus 539 n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~ 618 (899)
|... .|+++|++||+.++.|.+++.+++.+++...+. ..+ ..+++++
T Consensus 146 ~~~~------------------------~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~-------~~~--~~~~~~~ 192 (324)
T 1hqc_A 146 TRPG------------------------LITAPLLSRFGIVEHLEYYTPEELAQGVMRDAR-------LLG--VRITEEA 192 (324)
T ss_dssp SCCS------------------------SCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHH-------TTT--CCCCHHH
T ss_pred CCcc------------------------cCCHHHHhcccEEEecCCCCHHHHHHHHHHHHH-------hcC--CCCCHHH
Confidence 9642 377889999988999999999999888776652 223 5689999
Q ss_pred HHHHHh
Q psy2887 619 LKKISN 624 (899)
Q Consensus 619 ~~~L~~ 624 (899)
++.|..
T Consensus 193 ~~~l~~ 198 (324)
T 1hqc_A 193 ALEIGR 198 (324)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999988
No 76
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.63 E-value=1.6e-15 Score=170.60 Aligned_cols=167 Identities=21% Similarity=0.327 Sum_probs=129.4
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHh---cCCCEEEE
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN---NQKDIIIF 90 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~---~~~~~iL~ 90 (899)
.++||+||||||||++|+++|+.+ +.+++.++.... | ...++.++..+.. ...+.|||
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~----------~~~f~~l~a~~~-------~--~~~ir~~~~~a~~~~~~~~~~iLf 111 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYA----------NADVERISAVTS-------G--VKEIREAIERARQNRNAGRRTILF 111 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHT----------TCEEEEEETTTC-------C--HHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHh----------CCCeEEEEeccC-------C--HHHHHHHHHHHHHhhhcCCCcEEE
Confidence 579999999999999999999988 778887764221 1 2235556555542 34578999
Q ss_pred EccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHHHHHHHHHhhhhh
Q psy2887 91 IDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKK 170 (899)
Q Consensus 91 iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~il~~~~~~ 170 (899)
|||+|.+.. ...+.|+..++.+.+++|++|+... ...++++|.+||.++.|++|+.+++..+++..+..
T Consensus 112 IDEI~~l~~--------~~q~~LL~~le~~~v~lI~att~n~---~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 112 VDEVHRFNK--------SQQDAFLPHIEDGTITFIGATTENP---SFELNSALLSRARVYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp EETTTCC--------------CCHHHHHTTSCEEEEEESSCG---GGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHC
T ss_pred EeChhhhCH--------HHHHHHHHHHhcCceEEEecCCCCc---ccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHH
Confidence 999999964 3455789999999999999997655 34789999999999999999999999999988876
Q ss_pred hhcc---cCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhh
Q psy2887 171 YEVH---HGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIK 216 (899)
Q Consensus 171 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~ 216 (899)
.... .++.+++++++.+++.+.+.+. .+.++++.++....
T Consensus 181 ~~~~~~~~~~~i~~~al~~L~~~~~Gd~R------~lln~Le~a~~~a~ 223 (447)
T 3pvs_A 181 KTRGYGGQDIVLPDETRRAIAELVNGDAR------RALNTLEMMADMAE 223 (447)
T ss_dssp TTTSSTTSSEECCHHHHHHHHHHHCSCHH------HHHHHHHHHHHHSC
T ss_pred HhhhhccccCcCCHHHHHHHHHHCCCCHH------HHHHHHHHHHHhcc
Confidence 4322 4567999999999999877655 88888888877654
No 77
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.63 E-value=2.1e-15 Score=161.02 Aligned_cols=162 Identities=25% Similarity=0.413 Sum_probs=118.6
Q ss_pred ccCCChHHHHHHHHHHHHHhh--------cCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSR--------SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 459 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~--------~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 459 (899)
.+++|++.+++.|...+.... .+. .+..++||+||||||||++|+++|+.+ +.+++.++++++..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGI----EPPKGILLYGPPGTGKTLLAKAVATET---NATFIRVVGSELVK 89 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCC----CCCSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGGGGCC
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC----CCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehHHHHH
Confidence 568899999999988875431 111 122369999999999999999999999 88999999877654
Q ss_pred ccchhhccCCCCCccccccc--chhhHHHHhCCCEEEEEcccccc-----------CHHHHHHHHHhhcCCceecCCCce
Q psy2887 460 KHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKA-----------NSDVFNILLQILDDGRLTDNRGRT 526 (899)
Q Consensus 460 ~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~-----------~~~~~~~Ll~~le~g~~~~~~g~~ 526 (899)
. +.|.... ..++..+....++||||||+|.+ ....+..|+.+++...-..
T Consensus 90 ~------------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~----- 152 (285)
T 3h4m_A 90 K------------FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFD----- 152 (285)
T ss_dssp C------------STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTC-----
T ss_pred h------------ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCC-----
Confidence 3 3333222 34566667777899999999987 4556666666665310000
Q ss_pred EecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhh--ccCeEEEecCCCHHHHHHHHHHHH
Q psy2887 527 INFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQL 598 (899)
Q Consensus 527 ~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~~~~~~i~~~~l 598 (899)
...+++||+|||... .+++.+++ ||+.++.|++++.++..+|+...+
T Consensus 153 -~~~~~~vI~ttn~~~------------------------~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~ 201 (285)
T 3h4m_A 153 -ARGDVKIIGATNRPD------------------------ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHT 201 (285)
T ss_dssp -SSSSEEEEEECSCGG------------------------GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHH
T ss_pred -CCCCEEEEEeCCCch------------------------hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHH
Confidence 124678999998542 25677877 999999999999999999987665
No 78
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.63 E-value=8.2e-17 Score=170.34 Aligned_cols=178 Identities=22% Similarity=0.344 Sum_probs=122.2
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
..+.++||+||||||||++|+++|+.+ +.+++.+++..+. ..+.|.....++.+|..+... .|+|||
T Consensus 42 ~~~~~vll~G~~GtGKT~la~~la~~~----------~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~a~~~-~~~vl~ 108 (268)
T 2r62_A 42 KIPKGVLLVGPPGTGKTLLAKAVAGEA----------HVPFFSMGGSSFI--EMFVGLGASRVRDLFETAKKQ-APSIIF 108 (268)
T ss_dssp CCCSCCCCBCSSCSSHHHHHHHHHHHH----------TCCCCCCCSCTTT--TSCSSSCSSSSSTTHHHHHHS-CSCEEE
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh----------CCCEEEechHHHH--HhhcchHHHHHHHHHHHHHhc-CCeEEE
Confidence 345679999999999999999999998 5566666666554 334444444566777777643 488999
Q ss_pred EccccccccCCCCC-------chhhHHHhhhhhhc-----CCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCC
Q psy2887 91 IDELHTMIGTGKVE-------GSIDAGNMLKPELS-----RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEP 155 (899)
Q Consensus 91 iDEi~~l~~~~~~~-------~~~~~~~~l~~~l~-----~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p 155 (899)
|||+|.+...+... ......+.|+..++ ...+++|++||.++ .+++++.+ ||.. +.++.|
T Consensus 109 iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~-----~ld~~l~r~~Rf~~~i~i~~p 183 (268)
T 2r62_A 109 IDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPE-----ILDPALMRPGRFDRQVLVDKP 183 (268)
T ss_dssp ESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCT-----TSCGGGGSSSSSCCCCBCCCC
T ss_pred EeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCch-----hcCHhHcCCCCCCeEEEecCc
Confidence 99999998754211 11123344555553 23589999999987 78999999 9975 999999
Q ss_pred CHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhh
Q psy2887 156 DIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIK 216 (899)
Q Consensus 156 ~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~ 216 (899)
+.++|.++++.+++.+....++ .+..++..+.+| .+.++..+++.|+..+.
T Consensus 184 ~~~~r~~il~~~~~~~~~~~~~-----~~~~la~~~~g~-----~g~dl~~l~~~a~~~a~ 234 (268)
T 2r62_A 184 DFNGRVEILKVHIKGVKLANDV-----NLQEVAKLTAGL-----AGADLANIINEAALLAG 234 (268)
T ss_dssp CTTTHHHHHHHHTSSSCCCSSC-----CTTTTTSSSCSS-----CHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHhcCCCCCcc-----CHHHHHHHcCCC-----CHHHHHHHHHHHHHHHH
Confidence 9999999999888764332222 233445554433 23577777777776553
No 79
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.63 E-value=1.2e-15 Score=173.26 Aligned_cols=159 Identities=18% Similarity=0.330 Sum_probs=122.9
Q ss_pred ccCCChHHHHHHHHHHHHHhh--------cCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSR--------SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 459 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~--------~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 459 (899)
..++|++.+++.|...+.... .+. .+..++||+||||||||++|+++|+.+ +.+|+.++|+++.+
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~----~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~~l~~ 276 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGV----KPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMS 276 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTC----CCCCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCC----CCCCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEchHhhh
Confidence 578999999999998886531 111 222369999999999999999999998 89999999988764
Q ss_pred ccchhhccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccCH-----------HHHHHHHHhhcCCceecCCCce
Q psy2887 460 KHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS-----------DVFNILLQILDDGRLTDNRGRT 526 (899)
Q Consensus 460 ~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~-----------~~~~~Ll~~le~g~~~~~~g~~ 526 (899)
. +.|..+. +.++..+....++||||||||.+.+ .+++.|+..|+...
T Consensus 277 ~------------~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~-------- 336 (489)
T 3hu3_A 277 K------------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-------- 336 (489)
T ss_dssp S------------CTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC--------
T ss_pred h------------hcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc--------
Confidence 3 3333332 3456666677789999999976654 68899999998521
Q ss_pred EecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhh--ccCeEEEecCCCHHHHHHHHHHHH
Q psy2887 527 INFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQL 598 (899)
Q Consensus 527 ~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~~~~~~i~~~~l 598 (899)
...+++||+|||.... +.+.+.+ ||+..+.|.+++.++..+|++.++
T Consensus 337 -~~~~v~vIaaTn~~~~------------------------Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~ 385 (489)
T 3hu3_A 337 -QRAHVIVMAATNRPNS------------------------IDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (489)
T ss_dssp -TTSCEEEEEEESCGGG------------------------BCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHT
T ss_pred -cCCceEEEEecCCccc------------------------cCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHH
Confidence 2357889999996432 5667776 999999999999999999987665
No 80
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.62 E-value=3.2e-16 Score=148.27 Aligned_cols=138 Identities=7% Similarity=0.132 Sum_probs=104.6
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhcc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 467 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (899)
-.++|++.+++.+.+.+...... ..+++|+||||||||++|+++++.. . +++.++|+.+....
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~-------~~~vll~G~~GtGKt~lA~~i~~~~---~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKR-------TSPVFLTGEAGSPFETVARYFHKNG---T-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTC-------SSCEEEEEETTCCHHHHHGGGCCTT---S-CEECCSSTTHHHHC------
T ss_pred cCceeCCHHHHHHHHHHHHHhCC-------CCcEEEECCCCccHHHHHHHHHHhC---C-CeEEechhhCChHh------
Confidence 35789999999999988765421 1259999999999999999999887 4 89999998764421
Q ss_pred CCCCCcccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhh
Q psy2887 468 GAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKE 547 (899)
Q Consensus 468 g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~ 547 (899)
....+..+.+++|||||++.+++..|..|+++++++. ..++.+|+|||.+...+ .
T Consensus 67 --------------~~~~~~~a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~----------~~~~~iI~~tn~~~~~~-~ 121 (143)
T 3co5_A 67 --------------PMELLQKAEGGVLYVGDIAQYSRNIQTGITFIIGKAE----------RCRVRVIASCSYAAGSD-G 121 (143)
T ss_dssp --------------HHHHHHHTTTSEEEEEECTTCCHHHHHHHHHHHHHHT----------TTTCEEEEEEEECTTTC--
T ss_pred --------------hhhHHHhCCCCeEEEeChHHCCHHHHHHHHHHHHhCC----------CCCEEEEEecCCCHHHH-H
Confidence 2344455667899999999999999999999999742 35678999999876543 2
Q ss_pred hhcCcHHHHHHHHHHHHhhcCChhHhhccCe-EEEecCC
Q psy2887 548 MEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYL 585 (899)
Q Consensus 548 ~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l 585 (899)
.+ |+++|++||.. .|.++|+
T Consensus 122 -----------------~~-~~~~L~~rl~~~~i~lPpL 142 (143)
T 3co5_A 122 -----------------IS-CEEKLAGLFSESVVRIPPL 142 (143)
T ss_dssp ------------------C-HHHHHHHHSSSEEEEECCC
T ss_pred -----------------hC-ccHHHHHHhcCcEEeCCCC
Confidence 34 78889999854 6777776
No 81
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.61 E-value=5.5e-15 Score=164.05 Aligned_cols=198 Identities=18% Similarity=0.264 Sum_probs=126.4
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchh---
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS--- 464 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~--- 464 (899)
..++|++.+++.+.........+. .+..++||+||||||||++|+++|+.+. ...+++.+++..+.......
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~ 118 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQALG-PDTPFTAIAGSEIFSLEMSKTEA 118 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHHHC-SSCCEEEEEGGGGSCSSSCHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHHhc-ccCCcccccchhhhhcccchhHH
Confidence 578899999988776666555432 2223799999999999999999999983 23578888876643321000
Q ss_pred ------h----------------------------ccCCCCCcccccccchhhHHH----H----hCC----CEEEEEcc
Q psy2887 465 ------R----------------------------LIGAPPGYIGYEEGGYLTEIV----R----RKP----YSLILLDE 498 (899)
Q Consensus 465 ------~----------------------------l~g~~~~~~g~~~~~~l~~~~----~----~~~----~~vl~lDE 498 (899)
. +.+...++.|... ..+...+ . ... ++||||||
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDE 197 (368)
T 3uk6_A 119 LTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIK-SEVREQINAKVAEWREEGKAEIIPGVLFIDE 197 (368)
T ss_dssp HHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------C-HHHHHHHHHHHHHHHHHTC---CBCEEEEES
T ss_pred HHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccH-HHHHHHHHHHHHHhhhhccccccCceEEEhh
Confidence 0 0011111111111 1111111 1 111 47999999
Q ss_pred ccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCe
Q psy2887 499 IEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD 578 (899)
Q Consensus 499 id~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~ 578 (899)
++.+++..++.|++.+++. ...++|++++.+...+.....+ ....+++.|++|| .
T Consensus 198 i~~l~~~~~~~L~~~le~~------------~~~~~ii~t~~~~~~i~~t~~~------------~~~~l~~~l~sR~-~ 252 (368)
T 3uk6_A 198 VHMLDIESFSFLNRALESD------------MAPVLIMATNRGITRIRGTSYQ------------SPHGIPIDLLDRL-L 252 (368)
T ss_dssp GGGSBHHHHHHHHHHTTCT------------TCCEEEEEESCSEEECBTSSCE------------EETTCCHHHHTTE-E
T ss_pred ccccChHHHHHHHHHhhCc------------CCCeeeeecccceeeeeccCCC------------CcccCCHHHHhhc-c
Confidence 9999999999999999873 2224555555432211110000 0234778899999 5
Q ss_pred EEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhc
Q psy2887 579 IIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNI 625 (899)
Q Consensus 579 ~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~ 625 (899)
.+.|+|++.+++.+++...+.. .+ ..+++++++++++.
T Consensus 253 ~i~~~~~~~~e~~~il~~~~~~-------~~--~~~~~~~l~~l~~~ 290 (368)
T 3uk6_A 253 IVSTTPYSEKDTKQILRIRCEE-------ED--VEMSEDAYTVLTRI 290 (368)
T ss_dssp EEEECCCCHHHHHHHHHHHHHH-------TT--CCBCHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHH
Confidence 6899999999999998877642 33 67899999999983
No 82
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.61 E-value=2.2e-15 Score=170.42 Aligned_cols=176 Identities=21% Similarity=0.332 Sum_probs=131.6
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEE
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFI 91 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~i 91 (899)
.+.+++|+||||||||+||+++|+.+ +.+++.++...+. ..+.|.....++.+|+.+.. ..|+|+||
T Consensus 63 ip~GvLL~GppGtGKTtLaraIa~~~----------~~~~i~i~g~~~~--~~~~g~~~~~v~~lfq~a~~-~~p~il~I 129 (499)
T 2dhr_A 63 IPKGVLLVGPPGVGKTHLARAVAGEA----------RVPFITASGSDFV--EMFVGVGAARVRDLFETAKR-HAPCIVFI 129 (499)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHT----------TCCEEEEEGGGGT--SSCTTHHHHHHHHHTTTSSS-SSSCEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEehhHHH--HhhhhhHHHHHHHHHHHHHh-cCCCEEEE
Confidence 34569999999999999999999988 6788889887776 45678888888888887753 34889999
Q ss_pred ccccccccCCCCC---ch---hhHHHhhhhhhc----CCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCHH
Q psy2887 92 DELHTMIGTGKVE---GS---IDAGNMLKPELS----RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIE 158 (899)
Q Consensus 92 DEi~~l~~~~~~~---~~---~~~~~~l~~~l~----~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~~ 158 (899)
||++.+....... +. ....+.++..|+ ...+++|++||.++ .+|++++| ||+. |.|+.|+.+
T Consensus 130 DEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~-----~LD~aLlr~gRfdr~i~i~~Pd~~ 204 (499)
T 2dhr_A 130 DEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD-----ILDPALLRPGRFDRQIAIDAPDVK 204 (499)
T ss_dssp ECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGG-----GSCTTTSSTTSSCCEEECCCCCHH
T ss_pred ehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChh-----hcCcccccccccceEEecCCCCHH
Confidence 9999997654321 11 123445555553 34688999999998 69999999 8886 999999999
Q ss_pred HHHHHHHhhhhhhhcccCCCCCHH-HHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhh
Q psy2887 159 ETISILRGLQKKYEVHHGVEITDP-AIVAASELSYRYISDRFMPDKAIDLIDEAAAKIK 216 (899)
Q Consensus 159 e~~~il~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~ 216 (899)
+|.+||+.+++.. .++++ .+..++..+.++.+ +++..++..|+..+.
T Consensus 205 ~R~~IL~~~~~~~------~l~~dv~l~~lA~~t~G~~g-----adL~~lv~~Aa~~A~ 252 (499)
T 2dhr_A 205 GREQILRIHARGK------PLAEDVDLALLAKRTPGFVG-----ADLENLLNEAALLAA 252 (499)
T ss_dssp HHHHHHHHTTSSS------CCCCSSTTHHHHTTSCSCCH-----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcC------CCChHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHHHH
Confidence 9999998776542 23333 25667777666543 677788888776543
No 83
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase, immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Probab=99.60 E-value=1.7e-15 Score=166.76 Aligned_cols=119 Identities=18% Similarity=0.321 Sum_probs=94.4
Q ss_pred cccccccccccHHHHHHHHHHhhccCCccceeeccccCCCCceEehhHHHHHhcC----CccEEEccCChHhHHhHhhhc
Q psy2887 629 LIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMR----NYAKIVLGNHEIHLLDVLINI 704 (899)
Q Consensus 629 ~~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~~~~l~~~~----~~~~~v~GNHe~~~l~~~~~~ 704 (899)
+.+.+|||||++..|.++++..+ .++.+.++|+|||||||+.+.+|+++|++++ +++++|+||||.+++....+.
T Consensus 84 pI~VIGDIHGq~~dL~~LL~~~g-~p~~d~yVFLGDyVDRGp~S~Evl~lL~aLk~~~P~~v~lLRGNHE~~~l~~~ygF 162 (521)
T 1aui_A 84 PVTVCGDIHGQFFDLMKLFEVGG-SPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTF 162 (521)
T ss_dssp SEEEECCCTTCHHHHHHHHHHHC-CTTTCCEEECSCCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSHHHHHHSSH
T ss_pred ceeeccCCCCCHHHHHHHHHhcC-CCCcceEEEcCCcCCCCCCHHHHHHHHHHHhhhCCCeEEEecCCccHHHHHHHhCc
Confidence 56789999999999999998544 4667999999999999999999999999874 579999999999988754432
Q ss_pred ccCchhchHHHhhCCcChHHHHHHHhcCCceEE-eCCEEEEecccccccc
Q psy2887 705 NKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIY-YKKYLMIHAGVAKQWT 753 (899)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~-~~~~~~vHAg~~~~~~ 753 (899)
. .+....+ .....+.+.+||+.||++.. .+++++||||+.|.|.
T Consensus 163 ~----~E~~~ky-~~~l~~~~~~~f~~LPlaaii~~~il~VHGGlsP~~~ 207 (521)
T 1aui_A 163 K----QECKIKY-SERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEIN 207 (521)
T ss_dssp H----HHHHHHS-CHHHHHHHHHHHTTSCCEEEETTTEEEESSCCCTTCC
T ss_pred c----HHHHHhh-hhHHHHHHHHHHHhCCceEEecCCceEECCCcCcccC
Confidence 1 1122222 12235678999999999954 5789999999999875
No 84
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.60 E-value=1.2e-14 Score=152.34 Aligned_cols=175 Identities=21% Similarity=0.330 Sum_probs=125.6
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEEc
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFID 92 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~iD 92 (899)
+.+++|+||||||||||++++++.+ +..++.++...+. ..+.+.....+..+|+.+.. ..|+++++|
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~----------~~~~i~~~~~~~~--~~~~~~~~~~i~~~~~~~~~-~~~~i~~~D 115 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEA----------RVPFITASGSDFV--EMFVGVGAARVRDLFETAKR-HAPCIVFID 115 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEEHHHHH--HSCTTHHHHHHHHHHHHHTT-SSSEEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh----------CCCEEEeeHHHHH--HHHhhHHHHHHHHHHHHHHh-cCCeEEEeh
Confidence 4459999999999999999999987 5667778776665 34567777788889988753 348899999
Q ss_pred cccccccCCCCC---c---hhhHHHhhhhhhc----CCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCHHH
Q psy2887 93 ELHTMIGTGKVE---G---SIDAGNMLKPELS----RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEE 159 (899)
Q Consensus 93 Ei~~l~~~~~~~---~---~~~~~~~l~~~l~----~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~~e 159 (899)
|++.+....... . .....+.+...++ ...++++++||.++ .+|++++| ||+. +.++.|+.++
T Consensus 116 eid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~-----~ld~~l~r~~rf~~~i~i~~p~~~~ 190 (254)
T 1ixz_A 116 EIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD-----ILDPALLRPGRFDRQIAIDAPDVKG 190 (254)
T ss_dssp THHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGG-----GSCGGGGSTTSSCEEEECCSCCHHH
T ss_pred hhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCch-----hCCHHHcCCCcCCeEEeeCCcCHHH
Confidence 999987644221 1 1223344444443 23578889999988 79999999 8885 8999999999
Q ss_pred HHHHHHhhhhhhhcccCCCCCHH-HHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhh
Q psy2887 160 TISILRGLQKKYEVHHGVEITDP-AIVAASELSYRYISDRFMPDKAIDLIDEAAAKIK 216 (899)
Q Consensus 160 ~~~il~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~ 216 (899)
|.+|++.+.... .+.++ .+..++..+.+|.+ .++..++..|+..+.
T Consensus 191 r~~il~~~~~~~------~~~~~~~~~~la~~~~G~~~-----~dl~~~~~~a~~~a~ 237 (254)
T 1ixz_A 191 REQILRIHARGK------PLAEDVDLALLAKRTPGFVG-----ADLENLLNEAALLAA 237 (254)
T ss_dssp HHHHHHHHHTTS------CBCTTCCHHHHHHTCTTCCH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC------CCCcccCHHHHHHHcCCCCH-----HHHHHHHHHHHHHHH
Confidence 999998776543 22322 25667777766553 577788887765543
No 85
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.59 E-value=2.2e-14 Score=157.97 Aligned_cols=204 Identities=14% Similarity=0.196 Sum_probs=122.4
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhcc----CCCceEEecccccccccc-
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFN----NEESIIRIDMSEFIEKHS- 462 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~----~~~~~~~~~~~~~~~~~~- 462 (899)
..++|++.++..+........ .+++||+||||||||++|+++|+.+.. .+.+ ++|........
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~---------~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~---~~~~~~~~~~~~ 91 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG---------IGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCP---VSSPNVEMIPDW 91 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG---------GCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCT---TCCSSGGGSCTT
T ss_pred hhccChHHHHHHHHHHhhCCC---------CceEEEECCCCccHHHHHHHHHHhCcccccccccc---ccccccccccch
Confidence 568899998776544433211 125999999999999999999998832 0122 22322111000
Q ss_pred -----------------------hhhccCCCCC---cccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcC
Q psy2887 463 -----------------------ISRLIGAPPG---YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDD 516 (899)
Q Consensus 463 -----------------------~~~l~g~~~~---~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~ 516 (899)
...++|...- ..+ .........+..+.++||||||++.+++..++.|++.+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~ 170 (350)
T 1g8p_A 92 ATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISK-GEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQS 170 (350)
T ss_dssp CCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHH-CGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHH
T ss_pred hhhhccccccCCCcccccCCCcchhhheeechhhhhhcC-CceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhc
Confidence 0111111000 000 0000001122233478999999999999999999999998
Q ss_pred Cc--eecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCC-HHHHHHH
Q psy2887 517 GR--LTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLN-RKNILSI 593 (899)
Q Consensus 517 g~--~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~-~~~~~~i 593 (899)
+. +....+......++++|+|+|... ..++++|++||+..+.+++++ .++..+|
T Consensus 171 ~~~~~~~~g~~~~~~~~~~li~~~n~~~-----------------------~~l~~~L~~R~~~~~~l~~~~~~~~~~~i 227 (350)
T 1g8p_A 171 GENVVERDGLSIRHPARFVLVGSGNPEE-----------------------GDLRPQLLDRFGLSVEVLSPRDVETRVEV 227 (350)
T ss_dssp SEEEECCTTCCEEEECCEEEEEEECSCS-----------------------CCCCHHHHTTCSEEEECCCCCSHHHHHHH
T ss_pred CceEEEecceEEeeCCceEEEEEeCCCC-----------------------CCCCHHHHhhcceEEEcCCCCcHHHHHHH
Confidence 75 333222222335788899999522 247889999998889999995 5566688
Q ss_pred HHHHHHHH-----------------HHHH---HhcCcceeecHHHHHHHHhccc
Q psy2887 594 ANIQLNIL-----------------KNKL---LKMNMDLKISKAALKKISNIGF 627 (899)
Q Consensus 594 ~~~~l~~~-----------------~~~~---~~~~~~~~~~~~~~~~L~~~~~ 627 (899)
+...+... .+.+ ......+.++++++++|.+..+
T Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~ 281 (350)
T 1g8p_A 228 IRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCI 281 (350)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHH
T ss_pred HHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 76643210 0111 1112236899999999998443
No 86
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.58 E-value=1e-14 Score=157.75 Aligned_cols=188 Identities=18% Similarity=0.309 Sum_probs=126.6
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCch-HHHHHHHHHHHH----HhcCC
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGE-FEDRLKKILKEI----SNNQK 85 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~-~~~~l~~~~~~~----~~~~~ 85 (899)
..+.++||+||||||||++|+++|+.+ +.+++.+++..+... .+.|. ....++.++..+ .....
T Consensus 48 ~~~~~vll~G~~GtGKT~la~~la~~l----------~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIARRLAKLA----------NAPFIKVEATKFTEV-GYVGKEVDSIIRDLTDSAGGAIDAVEQ 116 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHH----------TCCEEEEEGGGGSSC-CSGGGSTTHHHHHHHHTTTTCHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEcchhcccC-CccCccHHHHHHHHHHHhhHHHhhccC
Confidence 356799999999999999999999998 778899998876531 23332 223455555422 11112
Q ss_pred CEEEEEccccccccCCCCCch----hhHHHhhhhhhcCC------------ceEEEEecC----hhHHHHhhhcCHHHHh
Q psy2887 86 DIIIFIDELHTMIGTGKVEGS----IDAGNMLKPELSRG------------ELHCIGATT----LNEYRQYIEKDAAFER 145 (899)
Q Consensus 86 ~~iL~iDEi~~l~~~~~~~~~----~~~~~~l~~~l~~~------------~v~vI~at~----~~~~~~~~~ld~al~~ 145 (899)
++||||||+|.+.......+. ..+.+.|+..++.. .+++|++++ .+. .++++|.+
T Consensus 117 ~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~l~~~l~~ 191 (310)
T 1ofh_A 117 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPS-----DLIPELQG 191 (310)
T ss_dssp HCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGG-----GSCHHHHH
T ss_pred CCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcc-----cCCHHHHh
Confidence 569999999999875432221 12356777777653 678888853 344 78999999
Q ss_pred cccc-ccccCCCHHHHHHHHHh----hhhhhhc---ccC--CCCCHHHHHHHHhhhhhhc--ccCCCchhHHHHHHHHHH
Q psy2887 146 RFQK-ILVEEPDIEETISILRG----LQKKYEV---HHG--VEITDPAIVAASELSYRYI--SDRFMPDKAIDLIDEAAA 213 (899)
Q Consensus 146 Rf~~-i~l~~p~~~e~~~il~~----~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~--~~~~~p~~~~~ll~~a~~ 213 (899)
||+. +.|++|+.+++.+|++. +...+.. ..+ +.+++++++.+++.+.... ....-+..+.++++.+..
T Consensus 192 R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~ 271 (310)
T 1ofh_A 192 RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMD 271 (310)
T ss_dssp TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSH
T ss_pred hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHH
Confidence 9985 99999999999999983 3322211 122 4689999999988874310 012234466666666553
Q ss_pred h
Q psy2887 214 K 214 (899)
Q Consensus 214 ~ 214 (899)
.
T Consensus 272 ~ 272 (310)
T 1ofh_A 272 K 272 (310)
T ss_dssp H
T ss_pred h
Confidence 3
No 87
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.58 E-value=2.1e-14 Score=157.30 Aligned_cols=162 Identities=22% Similarity=0.241 Sum_probs=123.8
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
....++||+||||||||++|+++|+.+ +.+++.+++..+. ..+ .+...+.. ...+++||
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~~----------~~~~~~~~~~~~~----~~~----~~~~~~~~---~~~~~vl~ 111 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYEM----------SANIKTTAAPMIE----KSG----DLAAILTN---LSEGDILF 111 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHHT----------TCCEEEEEGGGCC----SHH----HHHHHHHT---CCTTCEEE
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh----------CCCeEEecchhcc----chh----HHHHHHHh---ccCCCEEE
Confidence 445689999999999999999999988 7788888875542 111 23344433 34578999
Q ss_pred EccccccccCCCCCchhhHHHhhhhhhcCC--------------------ceEEEEecChhHHHHhhhcCHHHHhccc-c
Q psy2887 91 IDELHTMIGTGKVEGSIDAGNMLKPELSRG--------------------ELHCIGATTLNEYRQYIEKDAAFERRFQ-K 149 (899)
Q Consensus 91 iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~--------------------~v~vI~at~~~~~~~~~~ld~al~~Rf~-~ 149 (899)
|||++.+.. ...+.|+..++.+ .+++|++||... .++++|++||+ .
T Consensus 112 lDEi~~l~~--------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~-----~l~~~L~~R~~~~ 178 (338)
T 3pfi_A 112 IDEIHRLSP--------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAG-----MLSNPLRDRFGMQ 178 (338)
T ss_dssp EETGGGCCH--------HHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGG-----GSCHHHHTTCSEE
T ss_pred EechhhcCH--------HHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCcc-----ccCHHHHhhcCEE
Confidence 999999863 4556677777543 278999999987 78999999995 5
Q ss_pred ccccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhh
Q psy2887 150 ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIK 216 (899)
Q Consensus 150 i~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~ 216 (899)
+.|++|+.+++..+++..+.. .++.++++++..++..+.+.. ..+.+++..+...+.
T Consensus 179 i~l~~~~~~e~~~il~~~~~~----~~~~~~~~~~~~l~~~~~G~~------r~l~~~l~~~~~~a~ 235 (338)
T 3pfi_A 179 FRLEFYKDSELALILQKAALK----LNKTCEEKAALEIAKRSRSTP------RIALRLLKRVRDFAD 235 (338)
T ss_dssp EECCCCCHHHHHHHHHHHHHH----TTCEECHHHHHHHHHTTTTCH------HHHHHHHHHHHHHHH
T ss_pred eeCCCcCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHHCcCH------HHHHHHHHHHHHHHH
Confidence 999999999999999988776 356789999999988776644 467777776654443
No 88
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.58 E-value=2.3e-16 Score=190.73 Aligned_cols=177 Identities=21% Similarity=0.324 Sum_probs=133.1
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
..+.++||+||||||||++|+++|+.+ +.+++.++++.+. +.|.|+.+..++.+|+.+.... |+|+|
T Consensus 509 ~~~~~vLL~GppGtGKT~Lakala~~~----------~~~~i~v~~~~l~--~~~~g~~~~~i~~~f~~a~~~~-p~vl~ 575 (806)
T 1ypw_A 509 TPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISIKGPELL--TMWFGESEANVREIFDKARQAA-PCVLF 575 (806)
T ss_dssp CCCCCCCCBCCTTSSHHHHHHHHHHHH----------TCCCCCCCCSSST--TCCTTTSSHHHHHHHHHHHHHC-SBCCC
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHHh----------CCCEEEEechHhh--hhhcCccHHHHHHHHHHHHhcC-CeEEE
Confidence 456789999999999999999999998 6677777777766 6688999999999999998554 89999
Q ss_pred EccccccccCCCCCc------hhhHHHhhhhhhc----CCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCH
Q psy2887 91 IDELHTMIGTGKVEG------SIDAGNMLKPELS----RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDI 157 (899)
Q Consensus 91 iDEi~~l~~~~~~~~------~~~~~~~l~~~l~----~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~ 157 (899)
|||+|.+...+.... ...+.+.|+..|+ ...++||+|||.++ .+|++++| ||+. |+++.|+.
T Consensus 576 iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~-----~ld~allrpgRf~~~i~~~~p~~ 650 (806)
T 1ypw_A 576 FDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD-----IIDPAILRPGRLDQLIYIPLPDE 650 (806)
T ss_dssp CSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCG-----GGSCTTSSGGGTTSCCCCCCCCC
T ss_pred EEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcc-----cCCHHHhCccccCceeecCCCCH
Confidence 999999987664321 2334556666664 45789999999998 79999999 9985 99999999
Q ss_pred HHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhh
Q psy2887 158 EETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 215 (899)
Q Consensus 158 ~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~ 215 (899)
+++.+||+.++++.....++.+ ..+++.+.+|. ++++..++..|+..+
T Consensus 651 ~~r~~Il~~~l~~~~~~~~~~l-----~~la~~t~g~s-----gadi~~l~~~a~~~a 698 (806)
T 1ypw_A 651 KSRVAILKANLRKSPVAKDVDL-----EFLAKMTNGFS-----GADLTEICQRACKLA 698 (806)
T ss_dssp SHHHHHTTTTTSCC----CCCC-----SCSCGGGSSSC-----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCcccCH-----HHHHHhccccC-----HHHHHHHHHHHHHHH
Confidence 9999999988876544333332 33445554443 356667777666544
No 89
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.58 E-value=1.3e-13 Score=181.95 Aligned_cols=453 Identities=17% Similarity=0.222 Sum_probs=234.4
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHH----h-----
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS----N----- 82 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~----~----- 82 (899)
.+.++||+||||||||+++..+...+ .+..++.++++.-... ..+...++.-. .
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l---------~~~~~~~infS~~Tta--------~~l~~~~e~~~e~~~~~~~G~ 1365 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAF---------PDFEVVSLNFSSATTP--------ELLLKTFDHHCEYKRTPSGET 1365 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGC---------TTEEEEEECCCTTCCH--------HHHHHHHHHHEEEEECTTSCE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhC---------CCCceEEEEeeCCCCH--------HHHHHHHhhcceEEeccCCCc
Confidence 34689999999999998876544332 1456677776544321 23444444311 0
Q ss_pred ------cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--------------CceEEEEecChhHHHHhhhcCHH
Q psy2887 83 ------NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--------------GELHCIGATTLNEYRQYIEKDAA 142 (899)
Q Consensus 83 ------~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--------------~~v~vI~at~~~~~~~~~~ld~a 142 (899)
.++..|+||||++.- ..+..|++...+.|.+.++. .++.+|+|+|++.......++++
T Consensus 1366 ~~~p~~~Gk~~VlFiDDiNmp--~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~R 1443 (3245)
T 3vkg_A 1366 VLRPTQLGKWLVVFCDEINLP--STDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHR 1443 (3245)
T ss_dssp EEEESSTTCEEEEEETTTTCC--CCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHH
T ss_pred ccCCCcCCceEEEEecccCCC--CccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHH
Confidence 123479999999963 34456677788888888852 24679999998753345679999
Q ss_pred HHhccccccccCCCHHHHHHHHHhhhhhhhcc-cCC-CCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhhhhhc
Q psy2887 143 FERRFQKILVEEPDIEETISILRGLQKKYEVH-HGV-EITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEID 220 (899)
Q Consensus 143 l~~Rf~~i~l~~p~~~e~~~il~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~~~~~ 220 (899)
|+|||.++.++.|+.++...|+..++..+... ..+ .+.+..+.+.+++.... ...++|. .+....
T Consensus 1444 f~r~F~vi~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v-~~~~lp~------------~k~HY~ 1510 (3245)
T 3vkg_A 1444 FLRHAPILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSES-QKRFTPD------------IQAHYI 1510 (3245)
T ss_dssp HHTTCCEEECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHH-HHHSCTT------------TSTTCC
T ss_pred HHhhceEEEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHH-HHhcCCC------------cCCCcc
Confidence 99999999999999999999988766543210 011 12233333333332210 0011110 000111
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHH
Q psy2887 221 SKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEI-EKVRLK 299 (899)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 299 (899)
..+.++.++-..+... ....... ....+...|.+|-.++-.-+-+.++. .-+..-
T Consensus 1511 FnLRDLsrv~qGll~~------~~~~~~~------------------~~~~lvrLW~HE~~RVF~DRLv~~~Dr~~f~~~ 1566 (3245)
T 3vkg_A 1511 YSPRELSRWDRALLEA------IQTMDGC------------------TLEGLVRLWAHEALRLFQDRLVETEEKEWTDKK 1566 (3245)
T ss_dssp CCHHHHHHHHHHHHHH------HHTSSCC------------------CTTHHHHHHHHHHHHHHTTTCSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh------cCccccC------------------CHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1222222221111110 0000000 01123445666554331111100000 000000
Q ss_pred HHH-hhhccchHhhhhhhhcchHHHHHHHHHhhhhcccCCCccccccccc-------cCcChHHHHHHHHHHhCCCCccc
Q psy2887 300 INK-ATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLK-------TKVGSEEIAEIVSRTTGIPVSKI 371 (899)
Q Consensus 300 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~v~~~~i~~~~~~~~~~~~~~~ 371 (899)
+.. ... .|.. ....... ...+.. ..++.+++...+...... .
T Consensus 1567 l~~~~~~--~F~~------------------~~~~~~~------~pllf~~f~~~~Y~~v~~~~l~~~l~~~L~~----y 1616 (3245)
T 3vkg_A 1567 IDEVALK--HFPS------------------VNLDALK------RPILYSNWLTKDYQPVNRSDLREYVKARLKV----F 1616 (3245)
T ss_dssp HHHHHHH--HCTT------------------SCGGGGC------SSCCCCSSCC----CCCHHHHHHHHHHHHHT----T
T ss_pred HHHHHHH--hcCc------------------chhhhcc------cCcchhhhccccCccCCHHHHHHHHHHHHHH----H
Confidence 000 000 0000 0000000 000000 112333333322211100 0
Q ss_pred chHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEE
Q psy2887 372 VQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIR 451 (899)
Q Consensus 372 ~~~~~~~l~~l~~~l~~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~ 451 (899)
-+....-.++=.++|++.|.+.-+..+ .|.||.||+|..|+||++++|..|... +..++.
T Consensus 1617 ----------n~~~~~m~LVlF~daleHv~RI~RIL~-------qp~GhaLLVGvgGSGkqSLtrLAa~i~---~~~vfq 1676 (3245)
T 3vkg_A 1617 ----------YEEELDVPLVLFNEVLDHILRIDRVFR-------QPQGHALLIGVSGGGKSVLSRFVAWMN---GLSIYT 1676 (3245)
T ss_dssp ----------C------CCCCCHHHHHHHHHHHHHHT-------STTCCEEEEESTTSSHHHHHHHHHHHT---TCEEEC
T ss_pred ----------HhcccCceEEeHHHHHHHHHHHHHHHc-------cCCCCeEEecCCCCcHHHHHHHHHHHh---CCeeEE
Confidence 000122356778999999988877765 566799999999999999999999887 777777
Q ss_pred ecccccccccchhhccCCCCCcccccccchhhHHHH----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceE
Q psy2887 452 IDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTI 527 (899)
Q Consensus 452 ~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~ 527 (899)
+..+.-.+.... ...+...++ +..+.|++|+|-+-..+.+++.+..+|..|.+.+-...
T Consensus 1677 i~i~k~Y~~~~f---------------~eDLk~l~~~aG~~~~~~vFL~tD~qi~~e~FLE~IN~lL~sGEVP~LF~~-- 1739 (3245)
T 3vkg_A 1677 IKVNNNYKSSDF---------------DDDLRMLLKRAGCKEEKICFIFDESNVLESSFLERMNTLLAGGEVPGLFEG-- 1739 (3245)
T ss_dssp CC----CCHHHH---------------HHHHHHHHHHHHTSCCCEEEEEEGGGCSSTHHHHHHHHHHHHSCCTTSSCT--
T ss_pred EeeeCCCCHHHH---------------HHHHHHHHHHHhcCCCCEEEEEeccccccHHHHHHHHHHhccCCccccCCH--
Confidence 665442221110 112222222 34567999999998888888888888888876532100
Q ss_pred ecCCeEEEEecCCChhhhhhh-------hc---CcHHHHHHHHHHHHhhcC-------------------ChhHhhccCe
Q psy2887 528 NFRNTIIVMTSNLGSDKIKEM-------EK---GDKEIIKLAVMNEVKIYF-------------------RPEFINRIDD 578 (899)
Q Consensus 528 ~~~~~~iI~tsn~~~~~~~~~-------~~---~~~~~~~~~~~~~l~~~~-------------------~~~l~~R~~~ 578 (899)
...+.+... .+ .+.+.+...+.+.+++.+ -|.|+++| .
T Consensus 1740 ------------dE~~~i~~~~r~~a~~~g~~~dt~~~l~~~Fi~rvr~NLHvVL~mSPvg~~fR~R~r~fPaLvncc-t 1806 (3245)
T 3vkg_A 1740 ------------EEFTALMHACKETAQRNGLILDSEEELYKYFTSQVRRNLHVVFTMNPASPDFHNRSATSPALFNRC-V 1806 (3245)
T ss_dssp ------------TTHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHTTTCCEEEEECTTSTTTTC----CTHHHHHS-E
T ss_pred ------------HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCEEEEEECCCCHHHHHHHHHChHHhhCc-e
Confidence 000001000 00 122333333333333222 38899998 7
Q ss_pred EEEecCCCHHHHHHHHHHHHHH
Q psy2887 579 IIVFRYLNRKNILSIANIQLNI 600 (899)
Q Consensus 579 ~i~f~~l~~~~~~~i~~~~l~~ 600 (899)
+--|.+-..+.+..+...+|..
T Consensus 1807 IDWf~~Wp~eAL~~Va~~fl~~ 1828 (3245)
T 3vkg_A 1807 LDWFGEWSPEALFQVGSEFTRN 1828 (3245)
T ss_dssp EEEEESCCHHHHHHHHHHHTTT
T ss_pred eeecCCCCHHHHHHHHHHHHhh
Confidence 8899999999999998887743
No 90
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.58 E-value=4.3e-15 Score=157.76 Aligned_cols=221 Identities=13% Similarity=0.019 Sum_probs=143.8
Q ss_pred CCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccC-------CCceEEecccccccccc
Q psy2887 390 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN-------EESIIRIDMSEFIEKHS 462 (899)
Q Consensus 390 v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~-------~~~~~~~~~~~~~~~~~ 462 (899)
+.|.+.-+..|...+.....+ .+.++++|+||||||||++++.+++.+... ...++.+||..+.+...
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~-----~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~ 96 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMS-----SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-----TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HH
T ss_pred cCCHHHHHHHHHHHHHHHhcC-----CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHH
Confidence 557778888888777665433 122379999999999999999999999432 24678899988766532
Q ss_pred h-----hhccCCCCCcccccccchhhHHHH-----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCe
Q psy2887 463 I-----SRLIGAPPGYIGYEEGGYLTEIVR-----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNT 532 (899)
Q Consensus 463 ~-----~~l~g~~~~~~g~~~~~~l~~~~~-----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ 532 (899)
. ..+.|..... +. ....+...+. ...+.|+||||+|.+. .++.|+.+++-.. ...++.
T Consensus 97 ~~~~I~~~L~g~~~~~-~~-~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~--------~~~s~~ 164 (318)
T 3te6_A 97 LYEKIWFAISKENLCG-DI-SLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWIS--------SKNSKL 164 (318)
T ss_dssp HHHHHHHHHSCCC--C-CC-CHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHH--------CSSCCE
T ss_pred HHHHHHHHhcCCCCCc-hH-HHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhccc--------ccCCcE
Confidence 2 2333432211 11 1122322222 3445799999999998 5667777664100 023567
Q ss_pred EEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccC-eEEEecCCCHHHHHHHHHHHHHHHHHH-H-----
Q psy2887 533 IIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRID-DIIVFRYLNRKNILSIANIQLNILKNK-L----- 605 (899)
Q Consensus 533 ~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~-~~i~f~~l~~~~~~~i~~~~l~~~~~~-~----- 605 (899)
++|+++|...- . ...+++.+.+||. .+|.|+||+.+++.+|+...+..+... +
T Consensus 165 ~vI~i~n~~d~-~-------------------~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~ 224 (318)
T 3te6_A 165 SIICVGGHNVT-I-------------------REQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVND 224 (318)
T ss_dssp EEEEECCSSCC-C-------------------HHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECT
T ss_pred EEEEEecCccc-c-------------------hhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccc
Confidence 88888885321 0 0123455789997 589999999999999999999764321 0
Q ss_pred -------------H-------hcCcceeecHHHHHHHHhcccCcccccccccccHHHHHHHHHHh
Q psy2887 606 -------------L-------KMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKI 650 (899)
Q Consensus 606 -------------~-------~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l~~~ 650 (899)
. -..+.+.++++|++++++..- ..-||++..++.++++++-+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA---~~~GD~R~Al~ilr~A~~~a 286 (318)
T 3te6_A 225 KKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVA---NVSGSTEKAFKICEAAVEIS 286 (318)
T ss_dssp TCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHH---HHHCSHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccCHHHHHHHHHHHH---hhCChHHHHHHHHHHHHHHH
Confidence 0 001234789999999988322 22599999999999888655
No 91
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.57 E-value=2.7e-14 Score=151.56 Aligned_cols=175 Identities=21% Similarity=0.316 Sum_probs=124.8
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEEc
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFID 92 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~iD 92 (899)
+.+++|+||||||||||++++++.+ ...++.++...+. ..+.+.....+..+|+.+.. ..|+++++|
T Consensus 73 ~~gvll~Gp~GtGKTtl~~~i~~~~----------~~~~i~~~~~~~~--~~~~~~~~~~i~~~~~~~~~-~~~~i~~iD 139 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLARAVAGEA----------RVPFITASGSDFV--EMFVGVGAARVRDLFETAKR-HAPCIVFID 139 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEEHHHHH--HSTTTHHHHHHHHHHHHHHT-SCSEEEEEE
T ss_pred CCeEEEECCCcChHHHHHHHHHHHc----------CCCEEEecHHHHH--HHHhhHHHHHHHHHHHHHHh-cCCcEEehh
Confidence 3459999999999999999999987 5667888876665 33556777788889988763 348899999
Q ss_pred cccccccCCCCC------chhhHHHhhhhhhc----CCceEEEEecChhHHHHhhhcCHHHHh--cccc-ccccCCCHHH
Q psy2887 93 ELHTMIGTGKVE------GSIDAGNMLKPELS----RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEE 159 (899)
Q Consensus 93 Ei~~l~~~~~~~------~~~~~~~~l~~~l~----~~~v~vI~at~~~~~~~~~~ld~al~~--Rf~~-i~l~~p~~~e 159 (899)
|++.+....... ......+.+...++ ...++++++||.++ .+|+++.| ||+. +.++.|+.++
T Consensus 140 eid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~-----~ld~~l~r~~rf~~~i~i~~p~~~~ 214 (278)
T 1iy2_A 140 EIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD-----ILDPALLRPGRFDRQIAIDAPDVKG 214 (278)
T ss_dssp THHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTT-----SSCHHHHSTTSSCCEEECCCCCHHH
T ss_pred hhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCch-----hCCHhHcCCCcCCeEEEeCCcCHHH
Confidence 999987543211 11223334444443 23478889999988 79999998 8885 9999999999
Q ss_pred HHHHHHhhhhhhhcccCCCCCHH-HHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhh
Q psy2887 160 TISILRGLQKKYEVHHGVEITDP-AIVAASELSYRYISDRFMPDKAIDLIDEAAAKIK 216 (899)
Q Consensus 160 ~~~il~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~ 216 (899)
|.+||+.+++.. .++++ .+..++..+.++.+ .++..++..|+..+.
T Consensus 215 r~~il~~~~~~~------~~~~~~~~~~la~~~~G~~~-----~dl~~l~~~a~~~a~ 261 (278)
T 1iy2_A 215 REQILRIHARGK------PLAEDVDLALLAKRTPGFVG-----ADLENLLNEAALLAA 261 (278)
T ss_dssp HHHHHHHHHTTS------CBCTTCCHHHHHHTCTTCCH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccC------CCCcccCHHHHHHHcCCCCH-----HHHHHHHHHHHHHHH
Confidence 999998776542 23322 25667777666543 567777777765443
No 92
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.57 E-value=5e-14 Score=144.18 Aligned_cols=168 Identities=21% Similarity=0.331 Sum_probs=122.5
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccC--CCceEEecccccccccchhh
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN--EESIIRIDMSEFIEKHSISR 465 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~ 465 (899)
..++|++.+++.+...+.... . .+++|+||||||||++|+.+++.+... ...++.++++.........
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~-------~--~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 86 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN-------I--PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVR- 86 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC-------C--CCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHH-
T ss_pred HHHcCcHHHHHHHHHHHhCCC-------C--CeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHH-
Confidence 568899999999998887532 1 149999999999999999999987432 2346666665433221111
Q ss_pred ccCCCCCcccccccchhhHHHH-----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCC
Q psy2887 466 LIGAPPGYIGYEEGGYLTEIVR-----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNL 540 (899)
Q Consensus 466 l~g~~~~~~g~~~~~~l~~~~~-----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~ 540 (899)
..+..... ...+.||||||++.+.+..++.|+.++++. ..++++|++||.
T Consensus 87 --------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~-----------~~~~~~i~~~~~ 141 (226)
T 2chg_A 87 --------------HKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMY-----------SKSCRFILSCNY 141 (226)
T ss_dssp --------------HHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHT-----------TTTEEEEEEESC
T ss_pred --------------HHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhc-----------CCCCeEEEEeCC
Confidence 01112221 245689999999999999999999999862 356788888885
Q ss_pred ChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHH
Q psy2887 541 GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALK 620 (899)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 620 (899)
.. .+.+.+.+|+. .+.|+|++.+++.+++...+.. .+ ..+++++++
T Consensus 142 ~~------------------------~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~-------~~--~~~~~~~~~ 187 (226)
T 2chg_A 142 VS------------------------RIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEK-------EG--VKITEDGLE 187 (226)
T ss_dssp GG------------------------GSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHH-------HT--CCBCHHHHH
T ss_pred hh------------------------hcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHH
Confidence 32 35677999995 9999999999999988766532 23 458899999
Q ss_pred HHHh
Q psy2887 621 KISN 624 (899)
Q Consensus 621 ~L~~ 624 (899)
.+.+
T Consensus 188 ~l~~ 191 (226)
T 2chg_A 188 ALIY 191 (226)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8886
No 93
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein, structural genomics, PSI-2, protein structu initiative; 2.30A {Saccharomyces cerevisiae}
Probab=99.57 E-value=5.6e-15 Score=156.49 Aligned_cols=118 Identities=22% Similarity=0.375 Sum_probs=94.9
Q ss_pred ccccccccccHHHHHHHHHHhhccCCccceeeccccCCCCceEehhHHHHHhcC----CccEEEccCChHhHHhHhhhcc
Q psy2887 630 IYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMR----NYAKIVLGNHEIHLLDVLININ 705 (899)
Q Consensus 630 ~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~~~~l~~~~----~~~~~v~GNHe~~~l~~~~~~~ 705 (899)
.+.+|||||++..|.++++.+++.+..+.++|+||+||||+.+.+|+.++++++ +++++|+||||.+.+....+..
T Consensus 66 i~viGDIHG~~~~L~~ll~~~g~~~~~~~~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~llrGNHE~~~i~~~ygf~ 145 (335)
T 3icf_A 66 ISVCGDTHGQFYDVLNLFRKFGKVGPKHTYLFNGDFVDRGSWSCEVALLFYCLKILHPNNFFLNRGNHESDNMNKIYGFE 145 (335)
T ss_dssp EEEECCCTTCHHHHHHHHHHHCCCBTTEEEEECSCCSSSSTTHHHHHHHHHHHHHHCTTTEEECCCTTSSHHHHHHHSHH
T ss_pred EEEEecCCCCHHHHHHHHHHcCCCCCCcEEEEeCCccCCCcChHHHHHHHHHHhhhCCCcEEEecCchhhhhhhhccccc
Confidence 678999999999999999999987666789999999999999999999999873 5799999999999887554322
Q ss_pred cCchhchHHHhhCCcChHHHHHHHhcCCceEEeC-CEEEEeccc-cccc
Q psy2887 706 KKSKLDTFDDILDAPDKKKLVSWLRTQPLAIYYK-KYLMIHAGV-AKQW 752 (899)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~~-~~~~vHAg~-~~~~ 752 (899)
. +.... ......+.+.+|++.||++..++ ++++||||+ .|.+
T Consensus 146 ~----e~~~k-~~~~l~~~~~~~f~~LPlaaii~~~il~vHGGl~sp~~ 189 (335)
T 3icf_A 146 D----ECKYK-YSQRIFNMFAQSFESLPLATLINNDYLVMHGGLPSDPS 189 (335)
T ss_dssp H----HHHHH-SCHHHHHHHHHHHTTSCSEEEETTTEEECSSCCCSCTT
T ss_pred h----HhHhh-ccHHHHHHHHHHHhhcceeEEEcCcEEEecCCcCCCcc
Confidence 1 11111 12334578899999999987765 799999999 5644
No 94
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.56 E-value=4.3e-14 Score=154.06 Aligned_cols=168 Identities=21% Similarity=0.339 Sum_probs=123.7
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCC--CceEEecccccccccchhh
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNE--ESIIRIDMSEFIEKHSISR 465 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~--~~~~~~~~~~~~~~~~~~~ 465 (899)
.+++|++.+++.+...+.... .++++|+||||||||++|+++++.+.+.. ..++.+++++........
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~---------~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~- 94 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS---------MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIR- 94 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC---------CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTH-
T ss_pred HHhhCCHHHHHHHHHHHHcCC---------CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHH-
Confidence 568899999999998887532 12599999999999999999999984322 246666665432211100
Q ss_pred ccCCCCCcccccccchhhHHHH-----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCC
Q psy2887 466 LIGAPPGYIGYEEGGYLTEIVR-----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNL 540 (899)
Q Consensus 466 l~g~~~~~~g~~~~~~l~~~~~-----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~ 540 (899)
..+..... ...++||||||++.+++..++.|+..+++. ..++++|+++|.
T Consensus 95 --------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~-----------~~~~~~i~~~~~ 149 (327)
T 1iqp_A 95 --------------EKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMF-----------SSNVRFILSCNY 149 (327)
T ss_dssp --------------HHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHT-----------TTTEEEEEEESC
T ss_pred --------------HHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhc-----------CCCCeEEEEeCC
Confidence 01112111 145689999999999999999999999872 356788888885
Q ss_pred ChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHH
Q psy2887 541 GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALK 620 (899)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 620 (899)
.. .+.+.+.+|+ ..+.|+|++.+++.+++...+ ...+ +.+++++++
T Consensus 150 ~~------------------------~l~~~l~sr~-~~~~~~~l~~~~~~~~l~~~~-------~~~~--~~~~~~~~~ 195 (327)
T 1iqp_A 150 SS------------------------KIIEPIQSRC-AIFRFRPLRDEDIAKRLRYIA-------ENEG--LELTEEGLQ 195 (327)
T ss_dssp GG------------------------GSCHHHHHTE-EEEECCCCCHHHHHHHHHHHH-------HTTT--CEECHHHHH
T ss_pred cc------------------------ccCHHHHhhC-cEEEecCCCHHHHHHHHHHHH-------HhcC--CCCCHHHHH
Confidence 33 2567789999 599999999999998877655 2334 568999999
Q ss_pred HHHh
Q psy2887 621 KISN 624 (899)
Q Consensus 621 ~L~~ 624 (899)
+++.
T Consensus 196 ~l~~ 199 (327)
T 1iqp_A 196 AILY 199 (327)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9987
No 95
>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit; carbohydrate metabolism, cell cycle, cell division; HET: 1ZN; 1.63A {Homo sapiens} SCOP: d.159.1.3 PDB: 3e7b_A* 3egg_A* 3egh_A* 3hvq_A 3v4y_A* 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A 2o8a_A 1u32_A* 1s70_A*
Probab=99.56 E-value=1e-14 Score=152.11 Aligned_cols=148 Identities=22% Similarity=0.319 Sum_probs=107.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCcccccccccccHHHHHHHHHHhhccCCccceeecc
Q psy2887 584 YLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLG 663 (899)
Q Consensus 584 ~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~G 663 (899)
.++++++..++.....- +..+..-+.+ ..+...+|||||++..|.++++..++. +.+.++|+|
T Consensus 28 ~l~~~~~~~l~~~~~~i----l~~ep~ll~~------------~~~i~viGDIHG~~~~L~~ll~~~g~~-~~~~~vfLG 90 (299)
T 3e7a_A 28 QLTENEIRGLCLKSREI----FLSQPILLEL------------EAPLKICGDIHGQYYDLLRLFEYGGFP-PESNYLFLG 90 (299)
T ss_dssp CCCHHHHHHHHHHHHHH----HHHSCSEEEE------------CSSEEEECBCTTCHHHHHHHHHHHCST-TSSCEEECS
T ss_pred CCCHHHHHHHHHHHHHH----HHhCCCeeec------------CCCEEEEecCCCCHHHHHHHHHHhCCC-CCccEEeCC
Confidence 36778887776544433 3333322232 135677999999999999999998875 558899999
Q ss_pred ccCCCCceEehhHHHHHhc----CCccEEEccCChHhHHhHhhhcccCchhchHHHhhCCcChHHHHHHHhcCCceEEe-
Q psy2887 664 DLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIYY- 738 (899)
Q Consensus 664 D~~d~g~~~~~~~~~l~~~----~~~~~~v~GNHe~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~- 738 (899)
|+||||+.+.+|+.+++++ +.++++|+||||.+.+....+... +.... ......+.+.+|++.||+....
T Consensus 91 D~VDrG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~i~~~ygF~~----e~~~k-y~~~l~~~~~~~f~~LPlaaii~ 165 (299)
T 3e7a_A 91 DYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYD----ECKRR-YNIKLWKTFTDCFNCLPIAAIVD 165 (299)
T ss_dssp CCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSHHHHHHHSHHH----HHHHH-SCHHHHHHHHHHHTTCCCEEEET
T ss_pred cccCCCCCcHHHHHHHHHHHhhCCCcEEEEecCchhhhhcccccchH----HHHHH-hhHHHHHHHHHHHhhCCceEEEC
Confidence 9999999999999999877 357999999999988865443211 01111 1222346788999999998665
Q ss_pred CCEEEEecccccccc
Q psy2887 739 KKYLMIHAGVAKQWT 753 (899)
Q Consensus 739 ~~~~~vHAg~~~~~~ 753 (899)
+++++||||+.|++.
T Consensus 166 ~~il~vHGGlsp~~~ 180 (299)
T 3e7a_A 166 EKIFCCHGGLSPDLQ 180 (299)
T ss_dssp TTEEEESSCCCTTCC
T ss_pred CeEEEEcCccCcccC
Confidence 589999999999763
No 96
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.56 E-value=3.1e-14 Score=154.54 Aligned_cols=167 Identities=22% Similarity=0.352 Sum_probs=123.5
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCC--CceEEecccccccccchhh
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNE--ESIIRIDMSEFIEKHSISR 465 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~--~~~~~~~~~~~~~~~~~~~ 465 (899)
.+++|++.+++.+...+.... .| +++|+||||||||++|+++++.+.+.+ .+++.++++.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~-------~~--~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~----- 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN-------IP--HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI----- 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC-------CC--CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCT-----
T ss_pred HHHhCCHHHHHHHHHHHhCCC-------CC--eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccCh-----
Confidence 568899999998887765321 12 499999999999999999999985433 34666776553211
Q ss_pred ccCCCCCcccccccch-hhHHHH-----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecC
Q psy2887 466 LIGAPPGYIGYEEGGY-LTEIVR-----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSN 539 (899)
Q Consensus 466 l~g~~~~~~g~~~~~~-l~~~~~-----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn 539 (899)
...+. +..... ...++||||||+|.+++..++.|+..+++ ...++++|++||
T Consensus 83 -----------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~-----------~~~~~~~i~~~~ 140 (319)
T 2chq_A 83 -----------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEM-----------YSKSCRFILSCN 140 (319)
T ss_dssp -----------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSS-----------SSSSEEEEEEES
T ss_pred -----------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHh-----------cCCCCeEEEEeC
Confidence 11111 122221 23468999999999999999999999986 236788899988
Q ss_pred CChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHH
Q psy2887 540 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAAL 619 (899)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~ 619 (899)
... .+.+.+.+|| ..+.|.|++.+++.+++...+ ...+ +.++++++
T Consensus 141 ~~~------------------------~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~-------~~~~--~~i~~~~l 186 (319)
T 2chq_A 141 YVS------------------------RIIEPIQSRC-AVFRFKPVPKEAMKKRLLEIC-------EKEG--VKITEDGL 186 (319)
T ss_dssp CGG------------------------GSCHHHHTTC-EEEECCCCCHHHHHHHHHHHH-------HTTC--CCBCHHHH
T ss_pred Chh------------------------hcchHHHhhC-eEEEecCCCHHHHHHHHHHHH-------HHcC--CCCCHHHH
Confidence 532 3677899999 699999999999988877665 3344 56899999
Q ss_pred HHHHh
Q psy2887 620 KKISN 624 (899)
Q Consensus 620 ~~L~~ 624 (899)
+.|+.
T Consensus 187 ~~l~~ 191 (319)
T 2chq_A 187 EALIY 191 (319)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99986
No 97
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.55 E-value=3.1e-15 Score=158.12 Aligned_cols=162 Identities=22% Similarity=0.338 Sum_probs=114.9
Q ss_pred ccCCChHHHHHHHHHHHHHhh-------cCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSR-------SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEK 460 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~-------~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~ 460 (899)
.+++|++.+++.+...+.... .+...+ .++||+||||||||++|+++|+.+ +.+++.++++.+...
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~vll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIP----KGVLLVGPPGTGKTLLAKAVAGEA---HVPFFSMGGSSFIEM 83 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCC----SCCCCBCSSCSSHHHHHHHHHHHH---TCCCCCCCSCTTTTS
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCC----ceEEEECCCCCcHHHHHHHHHHHh---CCCEEEechHHHHHh
Confidence 568899999988888765422 122111 248999999999999999999998 778988888876543
Q ss_pred cchhhccCCCCCcccccccchhhHHHHhCCCEEEEEccccccCHH---------------HHHHHHHhhcCCceecCCCc
Q psy2887 461 HSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSD---------------VFNILLQILDDGRLTDNRGR 525 (899)
Q Consensus 461 ~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~---------------~~~~Ll~~le~g~~~~~~g~ 525 (899)
+.|.. ....+.++..+....++||||||+|.+... .++.|+..+++-.
T Consensus 84 -----~~~~~-----~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~------- 146 (268)
T 2r62_A 84 -----FVGLG-----ASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG------- 146 (268)
T ss_dssp -----CSSSC-----SSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS-------
T ss_pred -----hcchH-----HHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc-------
Confidence 11211 112245666677777899999999998754 3555666665310
Q ss_pred eEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhh--ccCeEEEecCCCHHHHHHHHHHHH
Q psy2887 526 TINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQL 598 (899)
Q Consensus 526 ~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~~~~~~i~~~~l 598 (899)
....++++|+|||.... +++.+++ ||+..+.|++|+.++..++++.++
T Consensus 147 -~~~~~v~vi~ttn~~~~------------------------ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 147 -SENAPVIVLAATNRPEI------------------------LDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp -CSCSCCEEEECBSCCTT------------------------SCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred -cCCCCEEEEEecCCchh------------------------cCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 11245788999996532 5566776 999999999999999999987665
No 98
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.55 E-value=2.4e-14 Score=168.41 Aligned_cols=206 Identities=16% Similarity=0.202 Sum_probs=131.4
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccccc--------
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE-------- 459 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~-------- 459 (899)
..++||+.+++.+..++.... +++|+||||||||++|++||..+.......+.+.+.....
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g~-----------~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~ 109 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQKR-----------HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTV 109 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTTC-----------CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEE
T ss_pred ceEECchhhHhhccccccCCC-----------EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEE
Confidence 678899999999998887532 5999999999999999999998854432333332211110
Q ss_pred ------------------------------------------------------ccchhhccCCCC-------Ccccccc
Q psy2887 460 ------------------------------------------------------KHSISRLIGAPP-------GYIGYEE 478 (899)
Q Consensus 460 ------------------------------------------------------~~~~~~l~g~~~-------~~~g~~~ 478 (899)
......++|... +..+...
T Consensus 110 p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~ 189 (604)
T 3k1j_A 110 PACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAH 189 (604)
T ss_dssp ETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGG
T ss_pred ecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCcccccc
Confidence 001112333110 0000001
Q ss_pred cchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCC----------ceEecCCeEEEEecCCChhhhhhh
Q psy2887 479 GGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRG----------RTINFRNTIIVMTSNLGSDKIKEM 548 (899)
Q Consensus 479 ~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g----------~~~~~~~~~iI~tsn~~~~~~~~~ 548 (899)
.......+..+.+++|||||++.+++.+|+.|+++|+++.+....+ ......++.+|+|||...
T Consensus 190 ~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~------ 263 (604)
T 3k1j_A 190 ERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDT------ 263 (604)
T ss_dssp GGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHH------
T ss_pred ccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHH------
Confidence 1112234555677899999999999999999999999998775322 112235788999999421
Q ss_pred hcCcHHHHHHHHHHHHhhcCChhHhhccC---eEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhc
Q psy2887 549 EKGDKEIIKLAVMNEVKIYFRPEFINRID---DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNI 625 (899)
Q Consensus 549 ~~~~~~~~~~~~~~~l~~~~~~~l~~R~~---~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~ 625 (899)
...|+|+|++||+ ..++|++..+ +....+..++..+.+.+...+....++++++..|.+.
T Consensus 264 ----------------~~~l~~~l~~R~~v~~i~i~l~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~ 326 (604)
T 3k1j_A 264 ----------------VDKMHPALRSRIRGYGYEVYMRTTMP-DTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVRE 326 (604)
T ss_dssp ----------------HHHSCHHHHHHHHHHSEEEECCSEEE-CCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHH
T ss_pred ----------------HhhcCHHHHHHhhccceEeecccccc-CCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHH
Confidence 2358999999996 4666655432 2233344444445555544344468999999999884
Q ss_pred cc
Q psy2887 626 GF 627 (899)
Q Consensus 626 ~~ 627 (899)
.+
T Consensus 327 ~~ 328 (604)
T 3k1j_A 327 AQ 328 (604)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 99
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.54 E-value=6.2e-15 Score=156.13 Aligned_cols=189 Identities=16% Similarity=0.271 Sum_probs=118.0
Q ss_pred hhccCCChHHHHHHHHHH----HHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccccccc
Q psy2887 386 LCKRVVGQDEAISAVSNA----IRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKH 461 (899)
Q Consensus 386 l~~~v~gq~~~~~~l~~~----i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~ 461 (899)
+...++|++.+++.+... ....... ...+..++||+||||||||++|+++|+.+ +.+++.+++++.
T Consensus 31 ~~~~~i~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~~~~~---- 100 (272)
T 1d2n_A 31 IMNGIIKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKICSPDK---- 100 (272)
T ss_dssp CTTCCCCCSHHHHHHHHHHHHHHHHHHHC---SSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEECGGG----
T ss_pred HhcCCCCccHHHHHHHHHHHHHHHHHhcc---CCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeCHHH----
Confidence 345678888887777663 2222111 12344589999999999999999999998 889999887652
Q ss_pred chhhccCCCCCcccccccchhhHHHHhCCCEEEEEcccccc----------CHHHHHHHHHhhcCCceecCCCceEecCC
Q psy2887 462 SISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKA----------NSDVFNILLQILDDGRLTDNRGRTINFRN 531 (899)
Q Consensus 462 ~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~----------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 531 (899)
++|...+ ......+.++..+...+++||||||||.+ ...+++.|+..++... ....+
T Consensus 101 ----~~g~~~~-~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~--------~~~~~ 167 (272)
T 1d2n_A 101 ----MIGFSET-AKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAP--------PQGRK 167 (272)
T ss_dssp ----CTTCCHH-HHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCC--------STTCE
T ss_pred ----hcCCchH-HHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCcc--------CCCCC
Confidence 1221100 00001123444444566789999999987 4556677777666311 01245
Q ss_pred eEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCCh-hHhhccCeEEEecCCCH-HHHHHHHHHHHHHHHHHHHhcC
Q psy2887 532 TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRP-EFINRIDDIIVFRYLNR-KNILSIANIQLNILKNKLLKMN 609 (899)
Q Consensus 532 ~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~l~~R~~~~i~f~~l~~-~~~~~i~~~~l~~~~~~~~~~~ 609 (899)
++||+|||.... +.+ .+.+||+..+.++|++. +++..++...
T Consensus 168 ~~ii~ttn~~~~------------------------l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~------------ 211 (272)
T 1d2n_A 168 LLIIGTTSRKDV------------------------LQEMEMLNAFSTTIHVPNIATGEQLLEALELL------------ 211 (272)
T ss_dssp EEEEEEESCHHH------------------------HHHTTCTTTSSEEEECCCEEEHHHHHHHHHHH------------
T ss_pred EEEEEecCChhh------------------------cchhhhhcccceEEcCCCccHHHHHHHHHHhc------------
Confidence 678888885321 111 36789999999999987 6666654331
Q ss_pred cceeecHHHHHHHHhc--ccCccccccc
Q psy2887 610 MDLKISKAALKKISNI--GFDLIYGARD 635 (899)
Q Consensus 610 ~~~~~~~~~~~~L~~~--~~~~~~~~~d 635 (899)
..++++++..+++. +|++..+++.
T Consensus 212 --~~~~~~~~~~l~~~~~g~~~~g~ir~ 237 (272)
T 1d2n_A 212 --GNFKDKERTTIAQQVKGKKVWIGIKK 237 (272)
T ss_dssp --TCSCHHHHHHHHHHHTTSEEEECHHH
T ss_pred --CCCCHHHHHHHHHHhcCCCccccHHH
Confidence 24578888888763 4444433433
No 100
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A* 1tco_A* 1mf8_A* 2jog_A
Probab=99.54 E-value=1.1e-14 Score=154.46 Aligned_cols=120 Identities=18% Similarity=0.330 Sum_probs=94.3
Q ss_pred CcccccccccccHHHHHHHHHHhhccCCccceeeccccCCCCceEehhHHHHHhcC----CccEEEccCChHhHHhHhhh
Q psy2887 628 DLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMR----NYAKIVLGNHEIHLLDVLIN 703 (899)
Q Consensus 628 ~~~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~~~~l~~~~----~~~~~v~GNHe~~~l~~~~~ 703 (899)
.+.+.+|||||++..|.++++..+. ++.++++|+||+||||+.+.+|+.++++++ +++.+|+||||.+.+....+
T Consensus 70 ~pi~ViGDIHG~~~dL~~ll~~~g~-~~~~~~vfLGD~VDRG~~s~Evl~lL~~lk~~~p~~v~llrGNHE~~~i~~~yg 148 (357)
T 3ll8_A 70 APVTVCGDIHGQFFDLMKLFEVGGS-PANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFT 148 (357)
T ss_dssp SSEEEECCCTTCHHHHHHHHHHHCC-TTTCCEEECSCCSSSSTTHHHHHHHHHHHHHHCTTTEEECCCTTSSHHHHHHSS
T ss_pred ccceeeccCCCCHHHHHHHHHhcCC-CCCcEEEECCCccCCCcChHHHHHHHHHhhhhcCCcEEEEeCchhhhhhhcccC
Confidence 3567899999999999999987765 466899999999999999999999998873 47899999999998875443
Q ss_pred cccCchhchHHHhhCCcChHHHHHHHhcCCceEEe-CCEEEEecccccccc
Q psy2887 704 INKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIYY-KKYLMIHAGVAKQWT 753 (899)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~-~~~~~vHAg~~~~~~ 753 (899)
... +....+ .....+.+.+|++.||+.... +++++||||+.|++.
T Consensus 149 F~~----E~~~ky-~~~l~~~~~~~f~~LPlaaii~~~il~vHGGlsp~l~ 194 (357)
T 3ll8_A 149 FKQ----ECKIKY-SERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEIN 194 (357)
T ss_dssp HHH----HHHHHS-CHHHHHHHHHHHHTSCSEEEETTTEEECSSCCCTTCC
T ss_pred chh----hhhhcc-chhHHHHHHHHHHhCCcceEEcccEEEEecCcCcccC
Confidence 211 111111 223357789999999998655 589999999999763
No 101
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=2e-14 Score=158.49 Aligned_cols=198 Identities=18% Similarity=0.248 Sum_probs=130.7
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhcc---CCCceEEecccccccccchh
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFN---NEESIIRIDMSEFIEKHSIS 464 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~---~~~~~~~~~~~~~~~~~~~~ 464 (899)
.+++|++++++.+...+.... . ++++|+||||||||++|+++++.+.. ....++.+++++......+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~-------~--~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN-------L--PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVR 107 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT-------C--CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHT
T ss_pred HHhhCCHHHHHHHHHHHhcCC-------C--CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHH
Confidence 578899999999888875432 1 24999999999999999999999732 13457777776542211111
Q ss_pred hccCCCC-CcccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChh
Q psy2887 465 RLIGAPP-GYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSD 543 (899)
Q Consensus 465 ~l~g~~~-~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~ 543 (899)
..+.... ..+.... ...........++||||||++.+.+..++.|++.|++. ..++.+|+++|...
T Consensus 108 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~-----------~~~~~~il~~~~~~- 174 (353)
T 1sxj_D 108 EKVKNFARLTVSKPS-KHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETY-----------SGVTRFCLICNYVT- 174 (353)
T ss_dssp THHHHHHHSCCCCCC-TTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHT-----------TTTEEEEEEESCGG-
T ss_pred HHHHHHhhhcccccc-hhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhc-----------CCCceEEEEeCchh-
Confidence 0000000 0000000 00000111234579999999999999999999999973 24677888888533
Q ss_pred hhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHH
Q psy2887 544 KIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKIS 623 (899)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~ 623 (899)
.+.+.+.+|+ ..+.|.|++.+++..++...+. ..+ +.++++++++++
T Consensus 175 -----------------------~l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~~~-------~~~--~~i~~~~l~~l~ 221 (353)
T 1sxj_D 175 -----------------------RIIDPLASQC-SKFRFKALDASNAIDRLRFISE-------QEN--VKCDDGVLERIL 221 (353)
T ss_dssp -----------------------GSCHHHHHHS-EEEECCCCCHHHHHHHHHHHHH-------TTT--CCCCHHHHHHHH
T ss_pred -----------------------hCcchhhccC-ceEEeCCCCHHHHHHHHHHHHH-------HhC--CCCCHHHHHHHH
Confidence 2567799999 5999999999999998776652 234 678999999999
Q ss_pred hcccCcccccccccccHHHHHHH
Q psy2887 624 NIGFDLIYGARDVHGCKKSLSIL 646 (899)
Q Consensus 624 ~~~~~~~~~~~di~~~~~~l~~~ 646 (899)
+.. .||+......++.+
T Consensus 222 ~~~------~G~~r~~~~~l~~~ 238 (353)
T 1sxj_D 222 DIS------AGDLRRGITLLQSA 238 (353)
T ss_dssp HHT------SSCHHHHHHHHHHT
T ss_pred HHc------CCCHHHHHHHHHHH
Confidence 833 25655554444443
No 102
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors, drug design, cytoplasm, hydrolase, iron, manganese, metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens} SCOP: d.159.1.3 PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A* 3h68_A* 3h69_A* 1s95_A
Probab=99.54 E-value=1.5e-14 Score=152.02 Aligned_cols=115 Identities=21% Similarity=0.310 Sum_probs=91.7
Q ss_pred ccccccccccHHHHHHHHHHhhccCCccceeeccccCCCCceEehhHHHHHhc----CCccEEEccCChHhHHhHhhhcc
Q psy2887 630 IYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLININ 705 (899)
Q Consensus 630 ~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~~~~l~~~----~~~~~~v~GNHe~~~l~~~~~~~ 705 (899)
.+.+|||||++..|.++++..++.+..+.++|+||+||||+.+.+|+++++++ .+++.+|+||||.+++....+..
T Consensus 62 i~viGDIHG~~~~L~~ll~~~g~~~~~~~~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~l~~~ygf~ 141 (315)
T 3h63_A 62 ITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFE 141 (315)
T ss_dssp EEEECCCTTCHHHHHHHHHHHCCCBTTBCEEEESCCSSSSTTHHHHHHHHHHHHHHSTTTEEEECCTTSSHHHHHHHSHH
T ss_pred EEEEecCCCCHHHHHHHHHHhCCCCCCCEEEEeCCccCCCcChHHHHHHHHHhhhhcCCcEEEEecCccccccccccccc
Confidence 57799999999999999999988766667999999999999999999999987 35799999999999987654421
Q ss_pred cCchhchHHHhhCCcChHHHHHHHhcCCceEEe-CCEEEEecccc
Q psy2887 706 KKSKLDTFDDILDAPDKKKLVSWLRTQPLAIYY-KKYLMIHAGVA 749 (899)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~-~~~~~vHAg~~ 749 (899)
. ...........+.+.+|+..||++... +++++||||+.
T Consensus 142 ~-----e~~~k~~~~l~~~~~~~f~~LPla~ii~~~il~vHGGl~ 181 (315)
T 3h63_A 142 G-----EVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLF 181 (315)
T ss_dssp H-----HHHHHSCHHHHHHHHHHHTTSCSEEEETTTEEECSSCCC
T ss_pred H-----HHHHHhhhHHHHHHHHHHhcCCcEEEEcCCEEEeCCCCC
Confidence 1 111111122346678999999999765 58999999994
No 103
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.54 E-value=1.4e-14 Score=157.59 Aligned_cols=163 Identities=17% Similarity=0.265 Sum_probs=124.9
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhc----CCCEE
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNN----QKDII 88 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~----~~~~i 88 (899)
++.+|++||||||||++|+++|+.+ +.+++.++++.. + ...++..+...... +.+.|
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l----------~~~~~~i~~~~~-------~--~~~i~~~~~~~~~~~~~~~~~~v 108 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDV----------NADMMFVNGSDC-------K--IDFVRGPLTNFASAASFDGRQKV 108 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHT----------TEEEEEEETTTC-------C--HHHHHTHHHHHHHBCCCSSCEEE
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHh----------CCCEEEEccccc-------C--HHHHHHHHHHHHhhcccCCCCeE
Confidence 3445667889999999999999998 778888875431 1 23455555554322 25789
Q ss_pred EEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHHHHHHHHHh
Q psy2887 89 IFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRG 166 (899)
Q Consensus 89 L~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~il~~ 166 (899)
|||||+|.+.. .+..+.|+..++. ..+.+|++||... .+++++.+||..+.|++|+.+++.+|++.
T Consensus 109 liiDEi~~l~~-------~~~~~~L~~~le~~~~~~~iI~~~n~~~-----~l~~~l~sR~~~i~~~~~~~~e~~~il~~ 176 (324)
T 3u61_B 109 IVIDEFDRSGL-------AESQRHLRSFMEAYSSNCSIIITANNID-----GIIKPLQSRCRVITFGQPTDEDKIEMMKQ 176 (324)
T ss_dssp EEEESCCCGGG-------HHHHHHHHHHHHHHGGGCEEEEEESSGG-----GSCTTHHHHSEEEECCCCCHHHHHHHHHH
T ss_pred EEEECCcccCc-------HHHHHHHHHHHHhCCCCcEEEEEeCCcc-----ccCHHHHhhCcEEEeCCCCHHHHHHHHHH
Confidence 99999999962 2456678888864 5788999999987 78999999999999999999998887766
Q ss_pred hhhhhh---cccCCCCCH-HHHHHHHhhhhhhcccCCCchhHHHHHHHHH
Q psy2887 167 LQKKYE---VHHGVEITD-PAIVAASELSYRYISDRFMPDKAIDLIDEAA 212 (899)
Q Consensus 167 ~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~ 212 (899)
+.+.+. ...++.+++ +++..+++.+.+.+. .+++.++.++
T Consensus 177 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R------~a~~~L~~~~ 220 (324)
T 3u61_B 177 MIRRLTEICKHEGIAIADMKVVAALVKKNFPDFR------KTIGELDSYS 220 (324)
T ss_dssp HHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTT------HHHHHHHHHG
T ss_pred HHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHH------HHHHHHHHHh
Confidence 554332 346788988 999999999887666 6888888776
No 104
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.53 E-value=1e-12 Score=172.99 Aligned_cols=123 Identities=14% Similarity=0.222 Sum_probs=91.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEEc
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFID 92 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~iD 92 (899)
..++++.||+|||||++++.+|+.+ +..++.++|+.-.. ...+..+|..+... ++++++|
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~l----------g~~~v~~nc~e~ld--------~~~lg~~~~g~~~~--Gaw~~~D 704 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNL----------GRVVVVFNCDDSFD--------YQVLSRLLVGITQI--GAWGCFD 704 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTT----------TCCCEEEETTSSCC--------HHHHHHHHHHHHHH--TCEEEEE
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHh----------CCcEEEEECCCCCC--------hhHhhHHHHHHHhc--CCEeeeh
Confidence 3468899999999999999999999 88999998865431 13467777777644 4699999
Q ss_pred cccccccCCCCCchhhHHHhh-------hhhhc---------------CCceEEEEecChhHHHHhhhcCHHHHhccccc
Q psy2887 93 ELHTMIGTGKVEGSIDAGNML-------KPELS---------------RGELHCIGATTLNEYRQYIEKDAAFERRFQKI 150 (899)
Q Consensus 93 Ei~~l~~~~~~~~~~~~~~~l-------~~~l~---------------~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i 150 (899)
|++.+.. ++..++ ...+. .....+++|.|+ +|.....++++|++||-.|
T Consensus 705 E~nr~~~--------evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NP-gy~g~~eLP~~Lk~~Fr~v 775 (2695)
T 4akg_A 705 EFNRLDE--------KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNP-GYNGRSELPENLKKSFREF 775 (2695)
T ss_dssp TTTSSCH--------HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECC-CSSSSCCCCHHHHTTEEEE
T ss_pred hhhhcCh--------HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCC-CccCcccccHHHHhheEEE
Confidence 9999854 222222 11121 123456777776 4777778999999999889
Q ss_pred cccCCCHHHHHHHH
Q psy2887 151 LVEEPDIEETISIL 164 (899)
Q Consensus 151 ~l~~p~~~e~~~il 164 (899)
.+..|+.+...+|+
T Consensus 776 ~m~~Pd~~~i~ei~ 789 (2695)
T 4akg_A 776 SMKSPQSGTIAEMI 789 (2695)
T ss_dssp ECCCCCHHHHHHHH
T ss_pred EeeCCCHHHHHHHH
Confidence 99999988887775
No 105
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.53 E-value=8.8e-14 Score=146.50 Aligned_cols=159 Identities=20% Similarity=0.303 Sum_probs=112.6
Q ss_pred ccCCChHHHHHHHHHHHHHh--------hcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 459 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~--------~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 459 (899)
.+|.|.+++++.|.+.+... ..++..| . .++|+||||||||++|++||..+ +.+++.+++.++..
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~---~-GvlL~Gp~GtGKTtLakala~~~---~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTP---A-GVLLAGPPGCGKTLLAKAVANES---GLNFISVKGPELLN 82 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCC---S-EEEEESSTTSCHHHHHHHHHHHT---TCEEEEEETTTTCS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCC---C-eEEEECCCCCcHHHHHHHHHHHc---CCCEEEEEcHHHHh
Confidence 55677777777777655211 1233222 2 39999999999999999999998 66789998877654
Q ss_pred ccchhhccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccCH-----------HHHHHHHHhhcCCceecCCCce
Q psy2887 460 KHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS-----------DVFNILLQILDDGRLTDNRGRT 526 (899)
Q Consensus 460 ~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~-----------~~~~~Ll~~le~g~~~~~~g~~ 526 (899)
. +.|..+. +.++...+...++++|+||++.+.. ...+.++..|+.|.
T Consensus 83 ~------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~-------- 142 (274)
T 2x8a_A 83 M------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLE-------- 142 (274)
T ss_dssp S------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCC--------
T ss_pred h------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccc--------
Confidence 3 2332222 3455555566789999999997532 35677888888753
Q ss_pred EecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhh--ccCeEEEecCCCHHHHHHHHHHHH
Q psy2887 527 INFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQL 598 (899)
Q Consensus 527 ~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~~~~~~i~~~~l 598 (899)
....+++++++|.+. .++|.++. |||..|.++.++.++..+|++.++
T Consensus 143 -~~~~~i~ia~tn~p~------------------------~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 143 -ARQQVFIMAATNRPD------------------------IIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp -STTCEEEEEEESCGG------------------------GSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred -ccCCEEEEeecCChh------------------------hCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 224567778888543 35777875 999999999999999999987665
No 106
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.53 E-value=2e-14 Score=162.48 Aligned_cols=162 Identities=23% Similarity=0.398 Sum_probs=113.5
Q ss_pred ccCCChHHHHHHHHHHHHHhhcC--CCC--CCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccch
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSG--LSD--AKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSI 463 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~--~~~--~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~ 463 (899)
.+|+|+++++..+.+.+...... +.. ..-|. .++|+||||||||+||++||..+ +.+++.++++++...
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~-GvLL~GppGtGKTtLaraIa~~~---~~~~i~i~g~~~~~~--- 103 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPK-GVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVEM--- 103 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCS-EEEEECSSSSSHHHHHHHHHHHT---TCCEEEEEGGGGTSS---
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCc-eEEEECCCCCCHHHHHHHHHHHh---CCCEEEEehhHHHHh---
Confidence 67899999999998877654311 110 11223 49999999999999999999998 789999999887543
Q ss_pred hhccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccCH--------------HHHHHHHHhhcCCceecCCCceE
Q psy2887 464 SRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS--------------DVFNILLQILDDGRLTDNRGRTI 527 (899)
Q Consensus 464 ~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~--------------~~~~~Ll~~le~g~~~~~~g~~~ 527 (899)
++|.... +.+++......++|+||||||.+.. ..++.|+..|+.+.
T Consensus 104 ---------~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~--------- 165 (499)
T 2dhr_A 104 ---------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE--------- 165 (499)
T ss_dssp ---------CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC---------
T ss_pred ---------hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc---------
Confidence 2222211 2233333333468999999997642 35678888887643
Q ss_pred ecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhh--ccCeEEEecCCCHHHHHHHHHHHH
Q psy2887 528 NFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQL 598 (899)
Q Consensus 528 ~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~~~~~~i~~~~l 598 (899)
....+++|++||.+. .++|.+++ ||+..|.+.+++.+++.+|++.++
T Consensus 166 ~~~~viviAatn~p~------------------------~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~ 214 (499)
T 2dhr_A 166 KDTAIVVMAATNRPD------------------------ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 214 (499)
T ss_dssp SSCCCEEEECCSCGG------------------------GSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTT
T ss_pred cCccEEEEEecCChh------------------------hcCcccccccccceEEecCCCCHHHHHHHHHHHH
Confidence 124567778888542 25666775 899999999999999999886544
No 107
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.52 E-value=1.9e-14 Score=166.57 Aligned_cols=160 Identities=17% Similarity=0.245 Sum_probs=107.6
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcC-------cccCchHHHHHHHHHHHHHhcC
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG-------TKYRGEFEDRLKKILKEISNNQ 84 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~-------~~~~g~~~~~l~~~~~~~~~~~ 84 (899)
...+++|+|||||||||+|+++|+.+ +.++..+++..+... ..+.|.....+...|..+.. .
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l----------~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~-~ 175 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL----------GRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGK-L 175 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH----------TCEEEEECCCC--------------------CHHHHHHTTCS-S
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc----------CCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhc-c
Confidence 45689999999999999999999998 667777766543321 13455555556666666542 2
Q ss_pred CCEEEEEccccccccCCCCCchhhHHHhhhhhhcC-----------------CceEEEEecChhHHHHhhhcCHHHHhcc
Q psy2887 85 KDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-----------------GELHCIGATTLNEYRQYIEKDAAFERRF 147 (899)
Q Consensus 85 ~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~-----------------~~v~vI~at~~~~~~~~~~ld~al~~Rf 147 (899)
..|+||||++.+...... +..+.|+..|+. ..+++|+|||... .++++|++||
T Consensus 176 -~~vl~lDEid~l~~~~~~----~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~-----~l~~aL~~R~ 245 (543)
T 3m6a_A 176 -NPVFLLDEIDKMSSDFRG----DPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLA-----TIPGPLRDRM 245 (543)
T ss_dssp -SEEEEEEESSSCC-------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTT-----TSCHHHHHHE
T ss_pred -CCEEEEhhhhhhhhhhcc----CHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccc-----cCCHHHHhhc
Confidence 349999999999875421 234456666632 4679999999988 8999999999
Q ss_pred ccccccCCCHHHHHHHHHhhhhh-hhcc-----cCCCCCHHHHHHHHhhhh
Q psy2887 148 QKILVEEPDIEETISILRGLQKK-YEVH-----HGVEITDPAIVAASELSY 192 (899)
Q Consensus 148 ~~i~l~~p~~~e~~~il~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~ 192 (899)
..|.|+.|+.+++.+|++.++.. +... .++.++++++..++..+.
T Consensus 246 ~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~ 296 (543)
T 3m6a_A 246 EIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYT 296 (543)
T ss_dssp EEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHC
T ss_pred ceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCC
Confidence 98999999999999999876522 2211 245678999988776443
No 108
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.52 E-value=6.1e-14 Score=148.93 Aligned_cols=192 Identities=11% Similarity=0.051 Sum_probs=128.3
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhc-------------Ccc-cCchHHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA-------------GTK-YRGEFEDRLKKI 76 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~-------------~~~-~~g~~~~~l~~~ 76 (899)
..+++++|+||||||||++++.+++.+........+....++.+++..+.+ |.. ..+.....++.+
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 467799999999999999999999998643211122245677777644321 111 124455677888
Q ss_pred HHHH-HhcCCCEEEEEccccccccCCCCCchhhHHHhhhhh--hcCCceEEEEecChhHHHHhhhcCHHHHhccc--ccc
Q psy2887 77 LKEI-SNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPE--LSRGELHCIGATTLNEYRQYIEKDAAFERRFQ--KIL 151 (899)
Q Consensus 77 ~~~~-~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~--l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~--~i~ 151 (899)
|..+ .....+.|++|||+|.|.. +++...|... .+..++.+|+++|..+... ..+++++.+||. .|.
T Consensus 123 f~~~~~~~~~~~ii~lDE~d~l~~-------q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~-~~L~~~v~SR~~~~~i~ 194 (318)
T 3te6_A 123 ITNVPKAKKRKTLILIQNPENLLS-------EKILQYFEKWISSKNSKLSIICVGGHNVTIR-EQINIMPSLKAHFTEIK 194 (318)
T ss_dssp HHHSCGGGSCEEEEEEECCSSSCC-------THHHHHHHHHHHCSSCCEEEEEECCSSCCCH-HHHHTCHHHHTTEEEEE
T ss_pred HHHhhhccCCceEEEEecHHHhhc-------chHHHHHHhcccccCCcEEEEEEecCcccch-hhcchhhhccCCceEEE
Confidence 8775 2345688999999999971 3433333322 2456789999988765211 245777889995 499
Q ss_pred ccCCCHHHHHHHHHhhhhhhhcc-------------------------------cCCCCCHHHHHHHHhhh---hhhccc
Q psy2887 152 VEEPDIEETISILRGLQKKYEVH-------------------------------HGVEITDPAIVAASELS---YRYISD 197 (899)
Q Consensus 152 l~~p~~~e~~~il~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~---~~~~~~ 197 (899)
|++++.+|..+|++..++..... ..+.+++++++.+++.. .|.+.
T Consensus 195 F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R- 273 (318)
T 3te6_A 195 LNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTE- 273 (318)
T ss_dssp CCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCSHH-
T ss_pred eCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCChHH-
Confidence 99999999999998877664311 01257899999888853 34333
Q ss_pred CCCchhHHHHHHHHHHhhh
Q psy2887 198 RFMPDKAIDLIDEAAAKIK 216 (899)
Q Consensus 198 ~~~p~~~~~ll~~a~~~~~ 216 (899)
+|++++..|+..+.
T Consensus 274 -----~Al~ilr~A~~~ae 287 (318)
T 3te6_A 274 -----KAFKICEAAVEISK 287 (318)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHH
Confidence 77777777775543
No 109
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.52 E-value=1.8e-13 Score=151.85 Aligned_cols=175 Identities=19% Similarity=0.230 Sum_probs=120.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcC------------------------------
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG------------------------------ 62 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~------------------------------ 62 (899)
..++||+||||||||++|+++|+.+.. ..+++.+.+..+...
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP--------DTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSL 141 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS--------SCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc--------cCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccH
Confidence 468999999999999999999999831 224454544331100
Q ss_pred -----------------cccCchHHHHHHHHHHHHHh----cC----CCEEEEEccccccccCCCCCchhhHHHhhhhhh
Q psy2887 63 -----------------TKYRGEFEDRLKKILKEISN----NQ----KDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL 117 (899)
Q Consensus 63 -----------------~~~~g~~~~~l~~~~~~~~~----~~----~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l 117 (899)
....|+....++..+..+.. .+ .|+||||||+|.+.. +..+.|+..+
T Consensus 142 ~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~--------~~~~~L~~~l 213 (368)
T 3uk6_A 142 HEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDI--------ESFSFLNRAL 213 (368)
T ss_dssp HHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBH--------HHHHHHHHHT
T ss_pred hhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccCh--------HHHHHHHHHh
Confidence 01123334445555554431 12 157999999999853 5667788877
Q ss_pred cCC--ceEEEEec-----------ChhHHHHhhhcCHHHHhccccccccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHH
Q psy2887 118 SRG--ELHCIGAT-----------TLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAI 184 (899)
Q Consensus 118 ~~~--~v~vI~at-----------~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~ 184 (899)
+.. .++++++. +.+. .++++|++||..+.|++|+.+++.+|++..+.. .++.++++++
T Consensus 214 e~~~~~~~ii~t~~~~~~i~~t~~~~~~-----~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~----~~~~~~~~~l 284 (368)
T 3uk6_A 214 ESDMAPVLIMATNRGITRIRGTSYQSPH-----GIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEE----EDVEMSEDAY 284 (368)
T ss_dssp TCTTCCEEEEEESCSEEECBTSSCEEET-----TCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHH----TTCCBCHHHH
T ss_pred hCcCCCeeeeecccceeeeeccCCCCcc-----cCCHHHHhhccEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHH
Confidence 643 34333332 1233 789999999999999999999999999987765 4678999999
Q ss_pred HHHHhhhhhhcccCCCchhHHHHHHHHHHhhhh
Q psy2887 185 VAASELSYRYISDRFMPDKAIDLIDEAAAKIKI 217 (899)
Q Consensus 185 ~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~~ 217 (899)
..+++.+.+ +.+..+..+++.++..+..
T Consensus 285 ~~l~~~~~~-----G~~r~~~~ll~~a~~~A~~ 312 (368)
T 3uk6_A 285 TVLTRIGLE-----TSLRYAIQLITAASLVCRK 312 (368)
T ss_dssp HHHHHHHHH-----SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-----CCHHHHHHHHHHHHHHHHH
Confidence 999999873 2345888899888766543
No 110
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.51 E-value=1.3e-13 Score=150.90 Aligned_cols=167 Identities=22% Similarity=0.349 Sum_probs=121.3
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCC--ceEEecccccccccchhh
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE--SIIRIDMSEFIEKHSISR 465 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~--~~~~~~~~~~~~~~~~~~ 465 (899)
.+++||+.+++.|...+...+ - ++++|+||||||||++|+++|+.+.+... .+..++.+.....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~-------~--~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~----- 90 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK-------L--PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGI----- 90 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC-------C--CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSH-----
T ss_pred HHhcCcHHHHHHHHHHHhcCC-------C--ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccH-----
Confidence 567899999999999887533 1 24999999999999999999999864432 2444444332111
Q ss_pred ccCCCCCcccccccch-hhHHHH-----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecC
Q psy2887 466 LIGAPPGYIGYEEGGY-LTEIVR-----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSN 539 (899)
Q Consensus 466 l~g~~~~~~g~~~~~~-l~~~~~-----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn 539 (899)
...+. +..... ...+.|++|||+|.+....++.|+..+++ ...++.+|+++|
T Consensus 91 -----------~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~-----------~~~~~~~il~~n 148 (340)
T 1sxj_C 91 -----------DVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIER-----------YTKNTRFCVLAN 148 (340)
T ss_dssp -----------HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHH-----------TTTTEEEEEEES
T ss_pred -----------HHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhc-----------CCCCeEEEEEec
Confidence 11111 111111 12368999999999999999999999997 235678888888
Q ss_pred CChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHH
Q psy2887 540 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAAL 619 (899)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~ 619 (899)
... .+.|.+.+|| ..+.|.|++.+++.+++...+ ...+ +.+++++.
T Consensus 149 ~~~------------------------~i~~~i~sR~-~~~~~~~l~~~~~~~~l~~~~-------~~~~--~~i~~~~~ 194 (340)
T 1sxj_C 149 YAH------------------------KLTPALLSQC-TRFRFQPLPQEAIERRIANVL-------VHEK--LKLSPNAE 194 (340)
T ss_dssp CGG------------------------GSCHHHHTTS-EEEECCCCCHHHHHHHHHHHH-------HTTT--CCBCHHHH
T ss_pred Ccc------------------------ccchhHHhhc-eeEeccCCCHHHHHHHHHHHH-------HHcC--CCCCHHHH
Confidence 532 3667799999 699999999999988876665 2234 56889999
Q ss_pred HHHHh
Q psy2887 620 KKISN 624 (899)
Q Consensus 620 ~~L~~ 624 (899)
..++.
T Consensus 195 ~~i~~ 199 (340)
T 1sxj_C 195 KALIE 199 (340)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99987
No 111
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.51 E-value=4.5e-14 Score=161.94 Aligned_cols=116 Identities=21% Similarity=0.305 Sum_probs=93.0
Q ss_pred cccccccccccHHHHHHHHHHhhccCCccceeeccccCCCCceEehhHHHHHhc----CCccEEEccCChHhHHhHhhhc
Q psy2887 629 LIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLINI 704 (899)
Q Consensus 629 ~~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~~~~l~~~----~~~~~~v~GNHe~~~l~~~~~~ 704 (899)
+...+|||||++..|.++++.+++.+..+.++|+||+||||+.+.+|+++++++ +.++++|+||||.+++....+.
T Consensus 214 ~~~vigDiHG~~~~l~~~l~~~~~~~~~~~~v~lGD~vdrG~~s~e~~~~l~~l~~~~~~~~~~lrGNHE~~~~~~~~g~ 293 (477)
T 1wao_1 214 KITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGF 293 (477)
T ss_dssp EEEEECBCTTCHHHHHHHHHHHCCCBTTBCEEEESCCSSSSTTHHHHHHHHHHHHHHSTTTEEEECCTTSSHHHHHHHSH
T ss_pred ceEEEeCCCCCHHHHHHHHHHcCCCCCcCeEEEeccccCCCcchHHHHHHHHHHHhhCCCceEeecCCccHHHHhhhcCh
Confidence 357799999999999999999988666678999999999999999999999886 4579999999999988755432
Q ss_pred ccCchhchHHHhhCCcChHHHHHHHhcCCceEEe-CCEEEEecccc
Q psy2887 705 NKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIYY-KKYLMIHAGVA 749 (899)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~-~~~~~vHAg~~ 749 (899)
.. +.... ........+.+|++.||+.... +++++||||++
T Consensus 294 ~~----~~~~~-~~~~~~~~~~~~~~~lp~~~~~~~~~~~vHgg~~ 334 (477)
T 1wao_1 294 EG----EVKAK-YTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLF 334 (477)
T ss_dssp HH----HHHHH-SCTTHHHHHHHHHTTSCSEEEETTTEEECSSCCC
T ss_pred HH----HHHHH-hhHHHHHHHHHHhccCCcEEEEcCcEEEECCCCC
Confidence 11 11122 2233457789999999999754 57999999993
No 112
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.51 E-value=1.5e-13 Score=149.32 Aligned_cols=183 Identities=14% Similarity=0.225 Sum_probs=129.6
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCC--CceEEecccccccccchhh
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNE--ESIIRIDMSEFIEKHSISR 465 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~--~~~~~~~~~~~~~~~~~~~ 465 (899)
.+++|++.+++.+...+.... .| +++|+||||||||++|+++++.+.... ..++.+++++......
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~-------~~--~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--- 88 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN-------MP--HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDV--- 88 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC-------CC--CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHH---
T ss_pred HHHHCCHHHHHHHHHHHHcCC-------CC--eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHH---
Confidence 568899999999998886422 12 499999999999999999999974322 3466666554221111
Q ss_pred ccCCCCCcccccccchhhHHHH-------hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEec
Q psy2887 466 LIGAPPGYIGYEEGGYLTEIVR-------RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTS 538 (899)
Q Consensus 466 l~g~~~~~~g~~~~~~l~~~~~-------~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ts 538 (899)
.+.+...+. ...+.||||||++.+....++.|++.+++ ...++++|++|
T Consensus 89 -------------i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~-----------~~~~~~~il~~ 144 (323)
T 1sxj_B 89 -------------VRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMEL-----------YSNSTRFAFAC 144 (323)
T ss_dssp -------------HHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHH-----------TTTTEEEEEEE
T ss_pred -------------HHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhc-----------cCCCceEEEEe
Confidence 111222221 23368999999999999999999999987 23567888888
Q ss_pred CCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHH
Q psy2887 539 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAA 618 (899)
Q Consensus 539 n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~ 618 (899)
|... .+.+.+.+|+ .++.|.|++.+++.+++...+.. .+ +.+++++
T Consensus 145 ~~~~------------------------~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~-------~~--~~~~~~~ 190 (323)
T 1sxj_B 145 NQSN------------------------KIIEPLQSQC-AILRYSKLSDEDVLKRLLQIIKL-------ED--VKYTNDG 190 (323)
T ss_dssp SCGG------------------------GSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH-------HT--CCBCHHH
T ss_pred CChh------------------------hchhHHHhhc-eEEeecCCCHHHHHHHHHHHHHH-------cC--CCCCHHH
Confidence 7522 3567799999 69999999999999998776632 23 5688999
Q ss_pred HHHHHhcccCcccccccccccHHHHHHH
Q psy2887 619 LKKISNIGFDLIYGARDVHGCKKSLSIL 646 (899)
Q Consensus 619 ~~~L~~~~~~~~~~~~di~~~~~~l~~~ 646 (899)
++.+++.. -||+......++.+
T Consensus 191 ~~~l~~~~------~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 191 LEAIIFTA------EGDMRQAINNLQST 212 (323)
T ss_dssp HHHHHHHH------TTCHHHHHHHHHHH
T ss_pred HHHHHHHc------CCCHHHHHHHHHHH
Confidence 99998732 34554443334443
No 113
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.51 E-value=2.6e-13 Score=147.61 Aligned_cols=159 Identities=25% Similarity=0.250 Sum_probs=116.4
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEE
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFI 91 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~i 91 (899)
...++||+||||||||++|+++++.+ +.+++.+++..+.. ...+...+... ...+++|||
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~----------~~~~~~~~~~~~~~--------~~~l~~~l~~~--~~~~~~l~l 96 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHEL----------GVNLRVTSGPAIEK--------PGDLAAILANS--LEEGDILFI 96 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHH----------TCCEEEECTTTCCS--------HHHHHHHHTTT--CCTTCEEEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEeccccCC--------hHHHHHHHHHh--ccCCCEEEE
Confidence 45789999999999999999999988 67777777654321 11233333221 345779999
Q ss_pred ccccccccCCCCCchhhHHHhhhhhhcC--------------------CceEEEEecChhHHHHhhhcCHHHHhccc-cc
Q psy2887 92 DELHTMIGTGKVEGSIDAGNMLKPELSR--------------------GELHCIGATTLNEYRQYIEKDAAFERRFQ-KI 150 (899)
Q Consensus 92 DEi~~l~~~~~~~~~~~~~~~l~~~l~~--------------------~~v~vI~at~~~~~~~~~~ld~al~~Rf~-~i 150 (899)
||++.+.. ...+.|...++. ..+.+|++||... .++++|.+||. .+
T Consensus 97 DEi~~l~~--------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~-----~~~~~l~~R~~~~i 163 (324)
T 1hqc_A 97 DEIHRLSR--------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPG-----LITAPLLSRFGIVE 163 (324)
T ss_dssp TTTTSCCH--------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCS-----SCSCSTTTTCSCEE
T ss_pred ECCccccc--------chHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcc-----cCCHHHHhcccEEE
Confidence 99999864 334455555543 2478999999887 78899999996 69
Q ss_pred cccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHH
Q psy2887 151 LVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAA 213 (899)
Q Consensus 151 ~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~ 213 (899)
.+++|+.+++..+++..+.. .++.++++++..++..+.++ |..+..++..+..
T Consensus 164 ~l~~~~~~e~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~G~------~r~l~~~l~~~~~ 216 (324)
T 1hqc_A 164 HLEYYTPEELAQGVMRDARL----LGVRITEEAALEIGRRSRGT------MRVAKRLFRRVRD 216 (324)
T ss_dssp ECCCCCHHHHHHHHHHHHHT----TTCCCCHHHHHHHHHHSCSC------HHHHHHHHHHHTT
T ss_pred ecCCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHccCC------HHHHHHHHHHHHH
Confidence 99999999999999887765 35679999999998887553 3456566655543
No 114
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.50 E-value=6.3e-14 Score=152.41 Aligned_cols=154 Identities=16% Similarity=0.240 Sum_probs=110.1
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 499 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 499 (899)
+++|+||||||||++|+++++.+...+.+++.+++.++....... +. ......+..... .++||||||+
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~-~~--------~~~~~~~~~~~~--~~~vL~iDEi 107 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEH-LK--------KGTINEFRNMYK--SVDLLLLDDV 107 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHH-HH--------HTCHHHHHHHHH--TCSEEEEECG
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHH-HH--------cCcHHHHHHHhc--CCCEEEEcCc
Confidence 699999999999999999999997667889999988764321100 00 000111222222 3579999999
Q ss_pred cccCH--HHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccC
Q psy2887 500 EKANS--DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRID 577 (899)
Q Consensus 500 d~~~~--~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~ 577 (899)
+.+.. ..++.|+.+++.. ...+..+|++++..+..+ ..+.+.|.+||+
T Consensus 108 ~~l~~~~~~~~~l~~~l~~~----------~~~~~~iii~~~~~~~~l--------------------~~l~~~L~sR~~ 157 (324)
T 1l8q_A 108 QFLSGKERTQIEFFHIFNTL----------YLLEKQIILASDRHPQKL--------------------DGVSDRLVSRFE 157 (324)
T ss_dssp GGGTTCHHHHHHHHHHHHHH----------HHTTCEEEEEESSCGGGC--------------------TTSCHHHHHHHH
T ss_pred ccccCChHHHHHHHHHHHHH----------HHCCCeEEEEecCChHHH--------------------HHhhhHhhhccc
Confidence 99886 6788888877641 113345777777655532 237888999996
Q ss_pred --eEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHh
Q psy2887 578 --DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISN 624 (899)
Q Consensus 578 --~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 624 (899)
.++.|+| +.+++.+|+...+.. .+ +.++++++++|+.
T Consensus 158 ~~~~i~l~~-~~~e~~~il~~~~~~-------~~--~~l~~~~l~~l~~ 196 (324)
T 1l8q_A 158 GGILVEIEL-DNKTRFKIIKEKLKE-------FN--LELRKEVIDYLLE 196 (324)
T ss_dssp TSEEEECCC-CHHHHHHHHHHHHHH-------TT--CCCCHHHHHHHHH
T ss_pred CceEEEeCC-CHHHHHHHHHHHHHh-------cC--CCCCHHHHHHHHH
Confidence 6899999 999999998877732 33 6789999999998
No 115
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.50 E-value=1.9e-13 Score=152.60 Aligned_cols=211 Identities=20% Similarity=0.193 Sum_probs=141.8
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccC--------CCceEEecccccc-
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN--------EESIIRIDMSEFI- 458 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~--------~~~~~~~~~~~~~- 458 (899)
..++|++..++.+...+.....+ ..+ .+++|+||||||||++|+++++.+... +.+++.++|....
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~----~~~-~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 94 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN----EVK-FSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGG 94 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT----CCC-CEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCS
T ss_pred CCCCChHHHHHHHHHHHHHHHcC----CCC-CcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCC
Confidence 67899999999999988776533 122 379999999999999999999987443 6788999987654
Q ss_pred cccc-----hhhccCCCCCcccccccc---hhhHHHHhCCCEEEEEccccccCHHH-HHH-HHHhhcCCceecCCCceEe
Q psy2887 459 EKHS-----ISRLIGAPPGYIGYEEGG---YLTEIVRRKPYSLILLDEIEKANSDV-FNI-LLQILDDGRLTDNRGRTIN 528 (899)
Q Consensus 459 ~~~~-----~~~l~g~~~~~~g~~~~~---~l~~~~~~~~~~vl~lDEid~~~~~~-~~~-Ll~~le~g~~~~~~g~~~~ 528 (899)
+... ...+.|...+..|..... .+...+...+ .||||||+|.+.... ++. +..+++..
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~~~~~~l~~l~~~~----------- 162 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRRGGDIVLYQLLRSD----------- 162 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHSTTSHHHHHHHHTSS-----------
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCCCCceeHHHHhcCC-----------
Confidence 2211 223335444444433322 2333333333 399999999987642 455 55555431
Q ss_pred cCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy2887 529 FRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKM 608 (899)
Q Consensus 529 ~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~ 608 (899)
.++.+|+|||...- ...+.+.+.+||...+.|+|++.+++.+++...+.. .
T Consensus 163 -~~~~iI~~t~~~~~---------------------~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~-------~ 213 (384)
T 2qby_B 163 -ANISVIMISNDINV---------------------RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEY-------G 213 (384)
T ss_dssp -SCEEEEEECSSTTT---------------------TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHH-------T
T ss_pred -cceEEEEEECCCch---------------------HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh-------h
Confidence 57789999986431 234678889999789999999999999998877742 1
Q ss_pred CcceeecHHHHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 609 NMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 609 ~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
.....+++++++.+++... ...||++...+.++.+.
T Consensus 214 ~~~~~~~~~~~~~i~~~~~---~~~G~~r~a~~~l~~a~ 249 (384)
T 2qby_B 214 LIKGTYDDEILSYIAAISA---KEHGDARKAVNLLFRAA 249 (384)
T ss_dssp SCTTSCCSHHHHHHHHHHH---TTCCCHHHHHHHHHHHH
T ss_pred cccCCcCHHHHHHHHHHHH---hccCCHHHHHHHHHHHH
Confidence 1124688999999887332 11256555544455554
No 116
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.49 E-value=7.8e-13 Score=146.96 Aligned_cols=183 Identities=20% Similarity=0.277 Sum_probs=123.0
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccch----
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSI---- 463 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~---- 463 (899)
.+++|++.+++.+...+...+. + +.++|+||||||||++|+++++.+.... ......|..+......
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~-------~-~~~ll~G~~G~GKT~la~~la~~l~~~~-~~~~~~~~~~~~~~~~~~~~ 86 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRI-------H-HAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNCREIEQGR 86 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCC-------C-SEEEEESCTTSSHHHHHHHHHHHHSCTT-CSCSSCCSSSHHHHHHHTSC
T ss_pred hhccCcHHHHHHHHHHHHhCCC-------C-eEEEEECCCCCCHHHHHHHHHHHhCCCC-CCCCCCCcccHHHHHHhccC
Confidence 5689999999999999875431 1 2589999999999999999999984321 1111111111100000
Q ss_pred -hhccCC-CCCcccccccchhhHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEe
Q psy2887 464 -SRLIGA-PPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMT 537 (899)
Q Consensus 464 -~~l~g~-~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 537 (899)
..++.. ..+..+....+.+...+.. ..+.||||||++.++...++.|+..+++ ...++++|++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~-----------~~~~~~~Il~ 155 (373)
T 1jr3_A 87 FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-----------PPEHVKFLLA 155 (373)
T ss_dssp CSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHS-----------CCSSEEEEEE
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhc-----------CCCceEEEEE
Confidence 000000 0001122222334444332 2367999999999999999999999987 3467888888
Q ss_pred cCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHH
Q psy2887 538 SNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKA 617 (899)
Q Consensus 538 sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 617 (899)
|+... .+.+.+.+|+ ..+.|.|++.+++.+++...+.+ .+ +.++++
T Consensus 156 ~~~~~------------------------~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~-------~~--~~~~~~ 201 (373)
T 1jr3_A 156 TTDPQ------------------------KLPVTILSRC-LQFHLKALDVEQIRHQLEHILNE-------EH--IAHEPR 201 (373)
T ss_dssp ESCGG------------------------GSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH-------HT--CCBCHH
T ss_pred eCChH------------------------hCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHH-------cC--CCCCHH
Confidence 88432 3567789999 89999999999999998777633 34 568899
Q ss_pred HHHHHHh
Q psy2887 618 ALKKISN 624 (899)
Q Consensus 618 ~~~~L~~ 624 (899)
+++.+++
T Consensus 202 a~~~l~~ 208 (373)
T 1jr3_A 202 ALQLLAR 208 (373)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999987
No 117
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.49 E-value=2.7e-13 Score=147.69 Aligned_cols=176 Identities=11% Similarity=0.096 Sum_probs=116.6
Q ss_pred CChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCce--EEecccc---cccc-c-ch
Q psy2887 391 VGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI--IRIDMSE---FIEK-H-SI 463 (899)
Q Consensus 391 ~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~--~~~~~~~---~~~~-~-~~ 463 (899)
.++.++++.+..++...+. .+.+||+||||||||++|+++|+.+......- .+..|.. +... + ..
T Consensus 5 pw~~~~~~~l~~~i~~~~~--------~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~ 76 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQAGRG--------HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDY 76 (334)
T ss_dssp GGGHHHHHHHHHHHHTTCC--------CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTE
T ss_pred CchHHHHHHHHHHHHcCCc--------ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 4678888888888875431 22699999999999999999999995432100 0001100 0000 0 00
Q ss_pred hhccCCC-CCcccccccchhhHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEec
Q psy2887 464 SRLIGAP-PGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTS 538 (899)
Q Consensus 464 ~~l~g~~-~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ts 538 (899)
..+.+.. ...++.+..+.+.+.+.. ..+.|++|||+|.+....+|.|++.||+ +..++++|++|
T Consensus 77 ~~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEe-----------p~~~~~~Il~t 145 (334)
T 1a5t_A 77 YTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEE-----------PPAETWFFLAT 145 (334)
T ss_dssp EEECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTS-----------CCTTEEEEEEE
T ss_pred EEEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcC-----------CCCCeEEEEEe
Confidence 0011100 012222222334444433 2468999999999999999999999997 34678899998
Q ss_pred CCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHH
Q psy2887 539 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAA 618 (899)
Q Consensus 539 n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~ 618 (899)
|... .+.|.+.+|| ..+.|.|++.+++.+++.... .+++++
T Consensus 146 ~~~~------------------------~l~~ti~SRc-~~~~~~~~~~~~~~~~L~~~~--------------~~~~~~ 186 (334)
T 1a5t_A 146 REPE------------------------RLLATLRSRC-RLHYLAPPPEQYAVTWLSREV--------------TMSQDA 186 (334)
T ss_dssp SCGG------------------------GSCHHHHTTS-EEEECCCCCHHHHHHHHHHHC--------------CCCHHH
T ss_pred CChH------------------------hCcHHHhhcc-eeeeCCCCCHHHHHHHHHHhc--------------CCCHHH
Confidence 8532 3677899999 799999999999988765432 567888
Q ss_pred HHHHHh
Q psy2887 619 LKKISN 624 (899)
Q Consensus 619 ~~~L~~ 624 (899)
++.++.
T Consensus 187 ~~~l~~ 192 (334)
T 1a5t_A 187 LLAALR 192 (334)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888876
No 118
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.49 E-value=1.2e-13 Score=146.10 Aligned_cols=176 Identities=16% Similarity=0.085 Sum_probs=118.1
Q ss_pred CCCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEE
Q psy2887 10 FYFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIII 89 (899)
Q Consensus 10 ~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL 89 (899)
.....++||+||||||||++|+++|+.+ +.+++.+++.....|. ..+.....++.+|..+.. ..++||
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~----------~~~~~~i~~~~~~~g~-~~~~~~~~~~~~~~~~~~-~~~~vl 128 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEES----------NFPFIKICSPDKMIGF-SETAKCQAMKKIFDDAYK-SQLSCV 128 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHH----------TCSEEEEECGGGCTTC-CHHHHHHHHHHHHHHHHT-SSEEEE
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEeCHHHhcCC-chHHHHHHHHHHHHHHHh-cCCcEE
Confidence 3456689999999999999999999998 7788888776543322 123334567778887753 458899
Q ss_pred EEccccccccCCCCC--chhhHHHhhhhhhc-----CCceEEEEecChhHHHHhhhcCH-HHHhcccc-ccccCCCH-HH
Q psy2887 90 FIDELHTMIGTGKVE--GSIDAGNMLKPELS-----RGELHCIGATTLNEYRQYIEKDA-AFERRFQK-ILVEEPDI-EE 159 (899)
Q Consensus 90 ~iDEi~~l~~~~~~~--~~~~~~~~l~~~l~-----~~~v~vI~at~~~~~~~~~~ld~-al~~Rf~~-i~l~~p~~-~e 159 (899)
||||++.|+...... ......+.|...++ ...+++|++||.++ .+++ .+.+||.. +.+++++. ++
T Consensus 129 ~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~-----~l~~~~l~~rf~~~i~~p~l~~r~~ 203 (272)
T 1d2n_A 129 VVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKD-----VLQEMEMLNAFSTTIHVPNIATGEQ 203 (272)
T ss_dssp EECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHH-----HHHHTTCTTTSSEEEECCCEEEHHH
T ss_pred EEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChh-----hcchhhhhcccceEEcCCCccHHHH
Confidence 999999997644221 12345566666664 23578999999887 5566 67889975 77877765 44
Q ss_pred HHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHH
Q psy2887 160 TISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAA 212 (899)
Q Consensus 160 ~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~ 212 (899)
...++.. . ..++++++..+++.+.+|..... ...+.++++.+.
T Consensus 204 i~~i~~~---~------~~~~~~~~~~l~~~~~g~~~~g~-ir~l~~~l~~a~ 246 (272)
T 1d2n_A 204 LLEALEL---L------GNFKDKERTTIAQQVKGKKVWIG-IKKLLMLIEMSL 246 (272)
T ss_dssp HHHHHHH---H------TCSCHHHHHHHHHHHTTSEEEEC-HHHHHHHHHHHT
T ss_pred HHHHHHh---c------CCCCHHHHHHHHHHhcCCCcccc-HHHHHHHHHHHh
Confidence 4444432 1 24688999999998887532111 124555555544
No 119
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.48 E-value=3.9e-13 Score=137.47 Aligned_cols=167 Identities=23% Similarity=0.253 Sum_probs=119.2
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHh-----cCCC
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN-----NQKD 86 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~-----~~~~ 86 (899)
...+++|+||||||||++++.+++.+.... ....++.+++.... + ...+...+..... ...+
T Consensus 37 ~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-----~~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~ 103 (226)
T 2chg_A 37 NIPHLLFSGPPGTGKTATAIALARDLFGEN-----WRDNFIEMNASDER------G--IDVVRHKIKEFARTAPIGGAPF 103 (226)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHHGGG-----GGGGEEEEETTCTT------C--HHHHHHHHHHHHTSCCSTTCSC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHhccc-----cccceEEecccccc------C--hHHHHHHHHHHhcccCCCccCc
Confidence 344699999999999999999999874321 12345656543221 1 1123333333322 2458
Q ss_pred EEEEEccccccccCCCCCchhhHHHhhhhhhc--CCceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHHHHHHHH
Q psy2887 87 IIIFIDELHTMIGTGKVEGSIDAGNMLKPELS--RGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISIL 164 (899)
Q Consensus 87 ~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~--~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~il 164 (899)
.||+|||++.+.. ...+.|...++ ...+.+|++|+... .+++++.+||..+.+++|+.++..+++
T Consensus 104 ~vliiDe~~~l~~--------~~~~~l~~~l~~~~~~~~~i~~~~~~~-----~~~~~l~~r~~~i~~~~~~~~~~~~~l 170 (226)
T 2chg_A 104 KIIFLDEADALTA--------DAQAALRRTMEMYSKSCRFILSCNYVS-----RIIEPIQSRCAVFRFKPVPKEAMKKRL 170 (226)
T ss_dssp EEEEEETGGGSCH--------HHHHHHHHHHHHTTTTEEEEEEESCGG-----GSCHHHHTTSEEEECCCCCHHHHHHHH
T ss_pred eEEEEeChhhcCH--------HHHHHHHHHHHhcCCCCeEEEEeCChh-----hcCHHHHHhCceeecCCCCHHHHHHHH
Confidence 8999999999854 34456666665 35678888888876 789999999999999999999999999
Q ss_pred HhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 165 RGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
+..+.. .+..++++++..++..+.+.+ ..+.+++..++..
T Consensus 171 ~~~~~~----~~~~~~~~~~~~l~~~~~g~~------r~l~~~l~~~~~~ 210 (226)
T 2chg_A 171 LEICEK----EGVKITEDGLEALIYISGGDF------RKAINALQGAAAI 210 (226)
T ss_dssp HHHHHH----HTCCBCHHHHHHHHHHHTTCH------HHHHHHHHHHHHT
T ss_pred HHHHHH----cCCCCCHHHHHHHHHHcCCCH------HHHHHHHHHHHhc
Confidence 887765 456689999999988876643 4677777766644
No 120
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.48 E-value=1.9e-13 Score=150.78 Aligned_cols=197 Identities=16% Similarity=0.262 Sum_probs=124.7
Q ss_pred ccCCChHHHHHHHHHHH-HHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccc------
Q psy2887 388 KRVVGQDEAISAVSNAI-RRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEK------ 460 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i-~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~------ 460 (899)
.+++|++.+++.+...+ ... +.| +++|+|||||||||+++++++.+++....-+.++...+...
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~-------~~~--~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~ 84 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR-------DLP--HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLE 84 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT-------CCC--CEEEECSTTSSHHHHHHTHHHHHSCTTCCC-----------------
T ss_pred HHhcCCHHHHHHHHHHHhhCC-------CCC--eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccce
Confidence 56889999998887766 321 122 49999999999999999999977543322222221111100
Q ss_pred ------cchhhccCCCCCcccccccchhhHHH----H-------------hCCCEEEEEccccccCHHHHHHHHHhhcCC
Q psy2887 461 ------HSISRLIGAPPGYIGYEEGGYLTEIV----R-------------RKPYSLILLDEIEKANSDVFNILLQILDDG 517 (899)
Q Consensus 461 ------~~~~~l~g~~~~~~g~~~~~~l~~~~----~-------------~~~~~vl~lDEid~~~~~~~~~Ll~~le~g 517 (899)
.....+.+.. .+......+.+.+ . ...+.|++|||++.+++..++.|++.|++
T Consensus 85 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~- 160 (354)
T 1sxj_E 85 LNVVSSPYHLEITPSD---MGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEK- 160 (354)
T ss_dssp -CCEECSSEEEECCC-------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHH-
T ss_pred eeeecccceEEecHhh---cCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHh-
Confidence 0000000000 0111100111111 1 22567999999999999999999999996
Q ss_pred ceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHH
Q psy2887 518 RLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQ 597 (899)
Q Consensus 518 ~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~ 597 (899)
...++.+|++|+.... +.+.+.+|| ..+.|.|++.+++.+++...
T Consensus 161 ----------~~~~~~~Il~t~~~~~------------------------l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~ 205 (354)
T 1sxj_E 161 ----------YSKNIRLIMVCDSMSP------------------------IIAPIKSQC-LLIRCPAPSDSEISTILSDV 205 (354)
T ss_dssp ----------STTTEEEEEEESCSCS------------------------SCHHHHTTS-EEEECCCCCHHHHHHHHHHH
T ss_pred ----------hcCCCEEEEEeCCHHH------------------------HHHHHHhhc-eEEecCCcCHHHHHHHHHHH
Confidence 2356788888885432 566799999 89999999999999988776
Q ss_pred HHHHHHHHHhcCcceeec-HHHHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 598 LNILKNKLLKMNMDLKIS-KAALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 598 l~~~~~~~~~~~~~~~~~-~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
+.+ .+ +.++ +++++.+++. .-||++.....++++.
T Consensus 206 ~~~-------~~--~~~~~~~~l~~i~~~------~~G~~r~a~~~l~~~~ 241 (354)
T 1sxj_E 206 VTN-------ER--IQLETKDILKRIAQA------SNGNLRVSLLMLESMA 241 (354)
T ss_dssp HHH-------HT--CEECCSHHHHHHHHH------HTTCHHHHHHHHTHHH
T ss_pred HHH-------cC--CCCCcHHHHHHHHHH------cCCCHHHHHHHHHHHH
Confidence 632 34 5788 9999999873 2456666555565554
No 121
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.48 E-value=2.5e-14 Score=166.80 Aligned_cols=197 Identities=13% Similarity=0.128 Sum_probs=119.1
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHHhhc-CCC-CCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEe----
Q psy2887 379 LLNIENLLCKRVVGQDEAISAVSNAIRRSRS-GLS-DAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRI---- 452 (899)
Q Consensus 379 l~~l~~~l~~~v~gq~~~~~~l~~~i~~~~~-~~~-~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~---- 452 (899)
+..+.+.+...++|++.+++.+..++..... ... ...++..++||+||||||||++|+++|+.+ +..+...
T Consensus 286 ~~~l~~~l~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~---~r~~~~~~~~~ 362 (595)
T 3f9v_A 286 RDRIISSIAPSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA---PRAVYTTGKGS 362 (595)
T ss_dssp GGTHHHHTSSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC---SCEECCCTTCS
T ss_pred HHHHHHhhcchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC---CCceecCCCcc
Confidence 4456777889999999988877554432210 000 011122279999999999999999999988 3333221
Q ss_pred cccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceec-CCCceE-ecC
Q psy2887 453 DMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTD-NRGRTI-NFR 530 (899)
Q Consensus 453 ~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~-~~g~~~-~~~ 530 (899)
+++.+..........|. . ......+..+.++|||||||+++++..++.|+++|+++.++. ..|... ...
T Consensus 363 ~~~~l~~~~~~~~~~g~-------~--~~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~ 433 (595)
T 3f9v_A 363 TAAGLTAAVVREKGTGE-------Y--YLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNA 433 (595)
T ss_dssp TTTTSEEECSSGGGTSS-------C--SEEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECC
T ss_pred ccccccceeeecccccc-------c--cccCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecC
Confidence 12222111100000010 0 011123334456899999999999999999999999998873 334433 346
Q ss_pred CeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHH
Q psy2887 531 NTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQL 598 (899)
Q Consensus 531 ~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l 598 (899)
++.||+|||.....+..... .. -.-.++++|++|||.++.+.++..++...|+...+
T Consensus 434 ~~~vIaatNp~~G~~~~~~~-----~~------~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il 490 (595)
T 3f9v_A 434 RAAVIAAGNPKFGRYISERP-----VS------DNINLPPTILSRFDLIFILKDQPGEQDRELANYIL 490 (595)
T ss_dssp CCEEEEEECCTTCCSCTTSC-----SC------TTTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHH
T ss_pred ceEEEEEcCCcCCccCcccC-----ch------hccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHH
Confidence 78899999975321110000 00 00157899999999877777776655555555444
No 122
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.48 E-value=2.9e-13 Score=156.25 Aligned_cols=201 Identities=15% Similarity=0.158 Sum_probs=130.2
Q ss_pred ccCCChHHHHHHHHHHHHHhh----cCCCCCC----CCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSR----SGLSDAK----RPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 459 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~----~~~~~~~----~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 459 (899)
.+++|++.+++.+...+..+. .++..+. .+..++||+||||||||++|+++|+.+ +.+++.++++++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s~~~~ 115 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASDVRS 115 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTSCCC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCCCcch
Confidence 678999999999999987643 2222221 123479999999999999999999999 88999999988765
Q ss_pred ccchhhccCCCCCcccccccchhhHHH-----HhCCCEEEEEccccccCHH---HHHHHHHhhcCCceecCCCceEecCC
Q psy2887 460 KHSISRLIGAPPGYIGYEEGGYLTEIV-----RRKPYSLILLDEIEKANSD---VFNILLQILDDGRLTDNRGRTINFRN 531 (899)
Q Consensus 460 ~~~~~~l~g~~~~~~g~~~~~~l~~~~-----~~~~~~vl~lDEid~~~~~---~~~~Ll~~le~g~~~~~~g~~~~~~~ 531 (899)
.......+.... +......++..+ ....++||||||+|.+... ..+.|++++++. +
T Consensus 116 ~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~-------------~ 179 (516)
T 1sxj_A 116 KTLLNAGVKNAL---DNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT-------------S 179 (516)
T ss_dssp HHHHHHTGGGGT---TBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC-------------S
T ss_pred HHHHHHHHHHHh---ccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc-------------C
Confidence 433222221100 000001111111 2245689999999999764 448888888762 3
Q ss_pred eEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcc
Q psy2887 532 TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 611 (899)
Q Consensus 532 ~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~ 611 (899)
..||+++|.... ..+ +.+.+|+ ..+.|.+++.+++.+++...+. ..+
T Consensus 180 ~~iIli~~~~~~----------------------~~l-~~l~~r~-~~i~f~~~~~~~~~~~L~~i~~-------~~~-- 226 (516)
T 1sxj_A 180 TPLILICNERNL----------------------PKM-RPFDRVC-LDIQFRRPDANSIKSRLMTIAI-------REK-- 226 (516)
T ss_dssp SCEEEEESCTTS----------------------STT-GGGTTTS-EEEECCCCCHHHHHHHHHHHHH-------HHT--
T ss_pred CCEEEEEcCCCC----------------------ccc-hhhHhce-EEEEeCCCCHHHHHHHHHHHHH-------HcC--
Confidence 335555553211 112 2355666 7999999999999998866553 234
Q ss_pred eeecHHHHHHHHhcccCcccccccccccHHHHHHH
Q psy2887 612 LKISKAALKKISNIGFDLIYGARDVHGCKKSLSIL 646 (899)
Q Consensus 612 ~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~ 646 (899)
+.+++++++.|++.. -||++.+...|+.+
T Consensus 227 ~~i~~~~l~~la~~s------~GdiR~~i~~L~~~ 255 (516)
T 1sxj_A 227 FKLDPNVIDRLIQTT------RGDIRQVINLLSTI 255 (516)
T ss_dssp CCCCTTHHHHHHHHT------TTCHHHHHHHHTHH
T ss_pred CCCCHHHHHHHHHHc------CCcHHHHHHHHHHH
Confidence 568899999998732 36666655545443
No 123
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.47 E-value=8.9e-13 Score=136.81 Aligned_cols=181 Identities=19% Similarity=0.269 Sum_probs=119.2
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccch----
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSI---- 463 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~---- 463 (899)
..++|++.+++.+...+.... .+ ..++|+||||||||++|+.+++.+.... ......+.........
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-------~~-~~~ll~G~~G~GKT~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 93 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-------IH-HAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNCREIEQGR 93 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-------CC-SEEEEECSTTSCHHHHHHHHHHHHHCTT-CSCSSCCSCSHHHHHHHTTC
T ss_pred HHHhCcHHHHHHHHHHHHcCC-------CC-eEEEEECCCCCCHHHHHHHHHHHhcCCC-CCCCCCCcccHHHHHHhccC
Confidence 568899999999999887533 11 2699999999999999999999883321 1111111111000000
Q ss_pred -hhccCCCCCcccccccchhhHHHHh-------CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEE
Q psy2887 464 -SRLIGAPPGYIGYEEGGYLTEIVRR-------KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIV 535 (899)
Q Consensus 464 -~~l~g~~~~~~g~~~~~~l~~~~~~-------~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI 535 (899)
..++..... +......+...+.. ..+.+|||||++.+++..++.|+..+++. ..++++|
T Consensus 94 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~-----------~~~~~~i 160 (250)
T 1njg_A 94 FVDLIEIDAA--SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-----------PEHVKFL 160 (250)
T ss_dssp CSSEEEEETT--CGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSC-----------CTTEEEE
T ss_pred CcceEEecCc--ccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcC-----------CCceEEE
Confidence 000000000 00001122223322 23579999999999999999999999862 3567888
Q ss_pred EecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeec
Q psy2887 536 MTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKIS 615 (899)
Q Consensus 536 ~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 615 (899)
++||... .+.+.+.+|+ ..+.|+|++.+++.+++...+.. .+ ..++
T Consensus 161 ~~t~~~~------------------------~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~-------~~--~~~~ 206 (250)
T 1njg_A 161 LATTDPQ------------------------KLPVTILSRC-LQFHLKALDVEQIRHQLEHILNE-------EH--IAHE 206 (250)
T ss_dssp EEESCGG------------------------GSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH-------TT--CCBC
T ss_pred EEeCChH------------------------hCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHh-------cC--CCCC
Confidence 8888532 2556688897 89999999999999998777632 33 5678
Q ss_pred HHHHHHHHh
Q psy2887 616 KAALKKISN 624 (899)
Q Consensus 616 ~~~~~~L~~ 624 (899)
+++++.+.+
T Consensus 207 ~~~~~~l~~ 215 (250)
T 1njg_A 207 PRALQLLAR 215 (250)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998887
No 124
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.47 E-value=3.2e-13 Score=141.32 Aligned_cols=187 Identities=21% Similarity=0.341 Sum_probs=120.4
Q ss_pred ccCCChHHHHHHHHHHHHHhh-------cCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSR-------SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEK 460 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~-------~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~ 460 (899)
++++|++.++..+........ .++. -|. .++|+||||||||+++++++..+ +.+++.+++.++...
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~---~~~-g~ll~G~~G~GKTtl~~~i~~~~---~~~~i~~~~~~~~~~ 88 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGAR---IPK-GVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVEM 88 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCC---CCS-EEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHHHHHHS
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCC---CCC-eEEEECCCCCCHHHHHHHHHHHh---CCCEEEeeHHHHHHH
Confidence 567788888777766554321 1221 122 49999999999999999999998 678888887665432
Q ss_pred cchhhccCCCCCcccccc--cchhhHHHHhCCCEEEEEccccccCH--------------HHHHHHHHhhcCCceecCCC
Q psy2887 461 HSISRLIGAPPGYIGYEE--GGYLTEIVRRKPYSLILLDEIEKANS--------------DVFNILLQILDDGRLTDNRG 524 (899)
Q Consensus 461 ~~~~~l~g~~~~~~g~~~--~~~l~~~~~~~~~~vl~lDEid~~~~--------------~~~~~Ll~~le~g~~~~~~g 524 (899)
+.+... .+.+++......++++|+||+|.+.. ..++.++..|+.+.
T Consensus 89 ------------~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~------ 150 (254)
T 1ixz_A 89 ------------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE------ 150 (254)
T ss_dssp ------------CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC------
T ss_pred ------------HhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCC------
Confidence 111111 12344444445578999999986531 34677777777643
Q ss_pred ceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhh--ccCeEEEecCCCHHHHHHHHHHHHHHHH
Q psy2887 525 RTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNILK 602 (899)
Q Consensus 525 ~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~~~~~~i~~~~l~~~~ 602 (899)
.....++++++|.+. .+++.+++ ||+..+.+++++.++..+|++.++.
T Consensus 151 ---~~~~~i~~a~t~~p~------------------------~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--- 200 (254)
T 1ixz_A 151 ---KDTAIVVMAATNRPD------------------------ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--- 200 (254)
T ss_dssp ---TTCCEEEEEEESCGG------------------------GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT---
T ss_pred ---CCCCEEEEEccCCch------------------------hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc---
Confidence 123456677777532 25677776 8999999999999999999865541
Q ss_pred HHHHhcCcceeecHHH-HHHHHhcccCccccccccccc
Q psy2887 603 NKLLKMNMDLKISKAA-LKKISNIGFDLIYGARDVHGC 639 (899)
Q Consensus 603 ~~~~~~~~~~~~~~~~-~~~L~~~~~~~~~~~~di~~~ 639 (899)
+ ..+++++ +..++. ....+..+||.+.
T Consensus 201 ------~--~~~~~~~~~~~la~--~~~G~~~~dl~~~ 228 (254)
T 1ixz_A 201 ------G--KPLAEDVDLALLAK--RTPGFVGADLENL 228 (254)
T ss_dssp ------T--SCBCTTCCHHHHHH--TCTTCCHHHHHHH
T ss_pred ------C--CCCCcccCHHHHHH--HcCCCCHHHHHHH
Confidence 2 2333333 555665 2223344677776
No 125
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.46 E-value=5.1e-13 Score=145.24 Aligned_cols=176 Identities=11% Similarity=0.149 Sum_probs=117.4
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEE
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFI 91 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~i 91 (899)
..++++|+|||||||||+|+++++.+... +.+++.+++..+. ....+.........|.... ..+.||||
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~-------~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~vL~i 104 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR-------GYRVIYSSADDFA--QAMVEHLKKGTINEFRNMY--KSVDLLLL 104 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT-------TCCEEEEEHHHHH--HHHHHHHHHTCHHHHHHHH--HTCSEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC-------CCEEEEEEHHHHH--HHHHHHHHcCcHHHHHHHh--cCCCEEEE
Confidence 45789999999999999999999988543 5678888876653 1222222111111222222 12669999
Q ss_pred ccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhccc---cccccCCCHHHHHHHHHhhh
Q psy2887 92 DELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQ---KILVEEPDIEETISILRGLQ 168 (899)
Q Consensus 92 DEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~---~i~l~~p~~~e~~~il~~~~ 168 (899)
||++.+..+. .........+....+.+..+++++++++. ....++++|.+||. .+.+++ +.+++.+|++..+
T Consensus 105 DEi~~l~~~~--~~~~~l~~~l~~~~~~~~~iii~~~~~~~--~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~ 179 (324)
T 1l8q_A 105 DDVQFLSGKE--RTQIEFFHIFNTLYLLEKQIILASDRHPQ--KLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKL 179 (324)
T ss_dssp ECGGGGTTCH--HHHHHHHHHHHHHHHTTCEEEEEESSCGG--GCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHH
T ss_pred cCcccccCCh--HHHHHHHHHHHHHHHCCCeEEEEecCChH--HHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHH
Confidence 9999986421 11223334444445666666666665543 12258999999994 488999 9999999999887
Q ss_pred hhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 169 KKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
.. .++.++++++..++..+ +.+. .+..+++.++..
T Consensus 180 ~~----~~~~l~~~~l~~l~~~~-g~~r------~l~~~l~~~~~~ 214 (324)
T 1l8q_A 180 KE----FNLELRKEVIDYLLENT-KNVR------EIEGKIKLIKLK 214 (324)
T ss_dssp HH----TTCCCCHHHHHHHHHHC-SSHH------HHHHHHHHHHHH
T ss_pred Hh----cCCCCCHHHHHHHHHhC-CCHH------HHHHHHHHHHHc
Confidence 65 56789999999999887 6443 555555555543
No 126
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.46 E-value=4.2e-12 Score=138.21 Aligned_cols=159 Identities=23% Similarity=0.352 Sum_probs=111.6
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEEc
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFID 92 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~iD 92 (899)
..+++|+||||+|||||++++|+.+ ++++.......+. . ...+..++... ..+.|+|||
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l----------~~~~~~~sg~~~~-----~---~~~l~~~~~~~---~~~~v~~iD 109 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASEL----------QTNIHVTSGPVLV-----K---QGDMAAILTSL---ERGDVLFID 109 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHH----------TCCEEEEETTTCC-----S---HHHHHHHHHHC---CTTCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEechHhc-----C---HHHHHHHHHHc---cCCCEEEEc
Confidence 4689999999999999999999998 5555433322111 0 11233333322 235699999
Q ss_pred cccccccCCCCCchhhHHHhhhhhhcC--------------------CceEEEEecChhHHHHhhhcCHHHHhcccc-cc
Q psy2887 93 ELHTMIGTGKVEGSIDAGNMLKPELSR--------------------GELHCIGATTLNEYRQYIEKDAAFERRFQK-IL 151 (899)
Q Consensus 93 Ei~~l~~~~~~~~~~~~~~~l~~~l~~--------------------~~v~vI~at~~~~~~~~~~ld~al~~Rf~~-i~ 151 (899)
|++.+.+ .+.+.|...++. ..+.++++|+.+. .+++++++||.. +.
T Consensus 110 E~~~l~~--------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~-----~Ls~~l~sR~~l~~~ 176 (334)
T 1in4_A 110 EIHRLNK--------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSG-----LLSSPLRSRFGIILE 176 (334)
T ss_dssp TGGGCCH--------HHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGG-----GSCHHHHTTCSEEEE
T ss_pred chhhcCH--------HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcc-----cCCHHHHHhcCceee
Confidence 9999864 223334333321 1367788888887 899999999985 78
Q ss_pred ccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhh
Q psy2887 152 VEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 215 (899)
Q Consensus 152 l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~ 215 (899)
|++|+.+++.++++...+. .++.++++++..+++.+.+. |..+.++++.+...+
T Consensus 177 Ld~~~~~~l~~iL~~~~~~----~~~~~~~~~~~~ia~~~~G~------~R~a~~ll~~~~~~a 230 (334)
T 1in4_A 177 LDFYTVKELKEIIKRAASL----MDVEIEDAAAEMIAKRSRGT------PRIAIRLTKRVRDML 230 (334)
T ss_dssp CCCCCHHHHHHHHHHHHHH----TTCCBCHHHHHHHHHTSTTC------HHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH----cCCCcCHHHHHHHHHhcCCC------hHHHHHHHHHHHHHH
Confidence 9999999999999987765 45778999999998887653 447777777665433
No 127
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.45 E-value=4.7e-13 Score=144.66 Aligned_cols=163 Identities=20% Similarity=0.240 Sum_probs=112.2
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCc----------ccCchHHHHHHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGT----------KYRGEFEDRLKKILKEI 80 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~----------~~~g~~~~~l~~~~~~~ 80 (899)
++..+++|+||||||||++|+++|+.+... +.+++.++++.+.... .+.|... ...+..+
T Consensus 45 ~~~~~~ll~G~~GtGKt~la~~la~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~---~~~~~~~ 114 (311)
T 4fcw_A 45 RPIGSFLFLGPTGVGKTELAKTLAATLFDT-------EEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE---GGQLTEA 114 (311)
T ss_dssp SCSEEEEEESCSSSSHHHHHHHHHHHHHSC-------GGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTT---CCHHHHH
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHHHcCC-------CcceEEeecccccccccHHHhcCCCCccccccc---cchHHHH
Confidence 344589999999999999999999988543 4567888876543211 0111100 0122222
Q ss_pred HhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC-------------ceEEEEecChh---------------H
Q psy2887 81 SNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCIGATTLN---------------E 132 (899)
Q Consensus 81 ~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~-------------~v~vI~at~~~---------------~ 132 (899)
.....++||||||++.+.+ .+.+.|+..++.+ ++++|++||.. +
T Consensus 115 ~~~~~~~vl~lDEi~~l~~--------~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~ 186 (311)
T 4fcw_A 115 VRRRPYSVILFDAIEKAHP--------DVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYER 186 (311)
T ss_dssp HHHCSSEEEEEETGGGSCH--------HHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSST
T ss_pred HHhCCCeEEEEeChhhcCH--------HHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHH
Confidence 2233468999999999854 5667788877542 55699999982 1
Q ss_pred HHH------hhhcCHHHHhcccc-ccccCCCHHHHHHHHHhhhhhhhcc-----cCCCCCHHHHHHHHhhh
Q psy2887 133 YRQ------YIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVH-----HGVEITDPAIVAASELS 191 (899)
Q Consensus 133 ~~~------~~~ld~al~~Rf~~-i~l~~p~~~e~~~il~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 191 (899)
+.. .-.++++|.+||+. +.+++|+.+++..|++.++.++... ..+.+++++++.+++.+
T Consensus 187 l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 257 (311)
T 4fcw_A 187 IRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERG 257 (311)
T ss_dssp HHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhC
Confidence 111 11678999999974 8899999999999999888765432 24578999999888754
No 128
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.45 E-value=1.6e-12 Score=145.25 Aligned_cols=201 Identities=16% Similarity=0.209 Sum_probs=137.0
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccC-CCceEEecccccccccch---
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN-EESIIRIDMSEFIEKHSI--- 463 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~-~~~~~~~~~~~~~~~~~~--- 463 (899)
..++|++..++.+...+.....+- .....+++|+||||||||++++++++.+... +..++.++|.........
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~---~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNP---GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHST---TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCC---CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 568899999999999887754331 0111269999999999999999999998655 568889998765532111
Q ss_pred -hhccCCCCCccccccc---chhhHHHHh-CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEec
Q psy2887 464 -SRLIGAPPGYIGYEEG---GYLTEIVRR-KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTS 538 (899)
Q Consensus 464 -~~l~g~~~~~~g~~~~---~~l~~~~~~-~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ts 538 (899)
...+|......|.... ..+...+.. ..+.||||||++.+++..++.|+.++++..-. ...++.+|++|
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~-------~~~~~~iI~~~ 166 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKL-------GAFRIALVIVG 166 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHH-------SSCCEEEEEEE
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCC-------CcCCEEEEEEE
Confidence 1222332221221111 123333333 34679999999999999999999999751100 01467788888
Q ss_pred CCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCe-EEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHH
Q psy2887 539 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKA 617 (899)
Q Consensus 539 n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 617 (899)
|... +...+.+.+.+||.. .+.|+|++.+++.+++...+... .....++++
T Consensus 167 ~~~~---------------------~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~-------~~~~~~~~~ 218 (389)
T 1fnn_A 167 HNDA---------------------VLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAG-------LAEGSYSED 218 (389)
T ss_dssp SSTH---------------------HHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHH-------BCTTSSCHH
T ss_pred CCch---------------------HHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhh-------cCCCCCCHH
Confidence 8542 123467788899965 89999999999999988776421 112368899
Q ss_pred HHHHHHhcc
Q psy2887 618 ALKKISNIG 626 (899)
Q Consensus 618 ~~~~L~~~~ 626 (899)
+++.+.+..
T Consensus 219 ~~~~l~~~~ 227 (389)
T 1fnn_A 219 ILQMIADIT 227 (389)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998844
No 129
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.45 E-value=4.5e-13 Score=148.00 Aligned_cols=169 Identities=23% Similarity=0.304 Sum_probs=117.0
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchH-HHHHHHHHHHHH---hcCCCE
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEF-EDRLKKILKEIS---NNQKDI 87 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~-~~~l~~~~~~~~---~~~~~~ 87 (899)
.+.++||+||||||||++|+++|+.+ +.+++.++++.+.. ..+.|.. ...+..++..+. ....++
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~----------~~~~~~~~~~~l~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 118 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL----------DVPFTMADATTLTE-AGYVGEDVENIIQKLLQKCDYDVQKAQRG 118 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEEHHHHTT-CHHHHHHHTHHHHHHHHHTTTCHHHHHHC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc----------CCCEEEechHHhcc-cccccccHHHHHHHHHHHhhhhHHhcCCc
Confidence 56799999999999999999999998 78899999987652 2355654 445666666541 112367
Q ss_pred EEEEccccccccCCCCCc------hhhHHHhhhhhhcCC-----------------------ceEEEEecChhHHHHh--
Q psy2887 88 IIFIDELHTMIGTGKVEG------SIDAGNMLKPELSRG-----------------------ELHCIGATTLNEYRQY-- 136 (899)
Q Consensus 88 iL~iDEi~~l~~~~~~~~------~~~~~~~l~~~l~~~-----------------------~v~vI~at~~~~~~~~-- 136 (899)
||||||++.+...+.... ...+.+.|++.|+.. ++.+|++++..++...
T Consensus 119 vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~ 198 (363)
T 3hws_A 119 IVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVIS 198 (363)
T ss_dssp EEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHH
T ss_pred EEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHH
Confidence 999999999987643321 112677888888721 2344555543221111
Q ss_pred --------------------------------------hhcCHHHHhcccc-ccccCCCHHHHHHHHHh----hhhhhhc
Q psy2887 137 --------------------------------------IEKDAAFERRFQK-ILVEEPDIEETISILRG----LQKKYEV 173 (899)
Q Consensus 137 --------------------------------------~~ld~al~~Rf~~-i~l~~p~~~e~~~il~~----~~~~~~~ 173 (899)
..+.|+|.+||+. +.|.+|+.+++.+|+.. ++.++..
T Consensus 199 ~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~ 278 (363)
T 3hws_A 199 HRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQA 278 (363)
T ss_dssp HHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHH
T ss_pred HhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1168999999997 66999999999999986 5444331
Q ss_pred -----ccCCCCCHHHHHHHHhhh
Q psy2887 174 -----HHGVEITDPAIVAASELS 191 (899)
Q Consensus 174 -----~~~~~~~~~~~~~~~~~~ 191 (899)
...+.+++++++.+++.+
T Consensus 279 ~~~~~~~~l~~~~~a~~~L~~~~ 301 (363)
T 3hws_A 279 LFNLEGVDLEFRDEALDAIAKKA 301 (363)
T ss_dssp HHHTTTCEEEECHHHHHHHHHHH
T ss_pred HHHhcCceEEECHHHHHHHHHhh
Confidence 123468999999988754
No 130
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.44 E-value=6.4e-14 Score=152.88 Aligned_cols=177 Identities=19% Similarity=0.186 Sum_probs=116.6
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhh------hhcCccc---CchHHHHHHHHHHHHHhc
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIAL------LLAGTKY---RGEFEDRLKKILKEISNN 83 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~------l~~~~~~---~g~~~~~l~~~~~~~~~~ 83 (899)
..|+||+||||||||++|+++|+.+ +.+++.+++.. +.....+ .|.+ .-.
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~----------~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~-----------~~~ 104 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTM----------DLDFHRIQFTPDLLPSDLIGTMIYNQHKGNF-----------EVK 104 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHT----------TCCEEEEECCTTCCHHHHHEEEEEETTTTEE-----------EEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh----------CCCeEEEecCCCCChhhcCCceeecCCCCce-----------Eec
Confidence 4689999999999999999999988 66677666521 1100000 0000 000
Q ss_pred CC---CEEEEEccccccccCCCCCchhhHHHhhhhhhcC-------------CceEEEEecChhHHHHhhhcCHHHHhcc
Q psy2887 84 QK---DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-------------GELHCIGATTLNEYRQYIEKDAAFERRF 147 (899)
Q Consensus 84 ~~---~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~-------------~~v~vI~at~~~~~~~~~~ld~al~~Rf 147 (899)
.+ .+||||||++.+.+ ...+.|...++. ..+.+|+++|+.++.....++++|++||
T Consensus 105 ~g~l~~~vl~iDEi~~~~~--------~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf 176 (331)
T 2r44_A 105 KGPVFSNFILADEVNRSPA--------KVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRF 176 (331)
T ss_dssp ECTTCSSEEEEETGGGSCH--------HHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTS
T ss_pred cCcccccEEEEEccccCCH--------HHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhhe
Confidence 11 25999999999754 455667777653 2567888888765433345899999999
Q ss_pred cc-ccccCCCHHHHHHHHHhhhhhhhc------------------ccCCCCCHHHHHHHHhhhhhhccc-----------
Q psy2887 148 QK-ILVEEPDIEETISILRGLQKKYEV------------------HHGVEITDPAIVAASELSYRYISD----------- 197 (899)
Q Consensus 148 ~~-i~l~~p~~~e~~~il~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~----------- 197 (899)
.. +.++.|+.+++.+|++........ ..++.++++++.++++++......
T Consensus 177 ~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~ 256 (331)
T 2r44_A 177 MMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEASY 256 (331)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHH
T ss_pred eEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccccccccccc
Confidence 85 999999999999999876543211 135677888888887776433221
Q ss_pred ---CCCchhHHHHHHHHHHhhhhh
Q psy2887 198 ---RFMPDKAIDLIDEAAAKIKIE 218 (899)
Q Consensus 198 ---~~~p~~~~~ll~~a~~~~~~~ 218 (899)
...+..+..++..+.+.+.+.
T Consensus 257 ~~~~~s~R~~~~ll~~a~a~A~l~ 280 (331)
T 2r44_A 257 ILYGASTRAAINLNRVAKAMAFFN 280 (331)
T ss_dssp EEECCCHHHHHHHHHHHHHHHHHT
T ss_pred cccCcChhHHHHHHHHHHHHHHHc
Confidence 123556666666665555443
No 131
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.44 E-value=5.8e-13 Score=138.08 Aligned_cols=164 Identities=14% Similarity=0.223 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCc
Q psy2887 394 DEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGY 473 (899)
Q Consensus 394 ~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 473 (899)
..++..+...+... +..+++|+||||||||++|+++++.+...+.+++.++++++..... .
T Consensus 37 ~~~~~~l~~~~~~~---------~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~--~-------- 97 (242)
T 3bos_A 37 DELIGALKSAASGD---------GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASIST--A-------- 97 (242)
T ss_dssp HHHHHHHHHHHHTC---------SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCG--G--------
T ss_pred HHHHHHHHHHHhCC---------CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH--H--------
Confidence 56666666655421 1137999999999999999999999976677888888877643210 0
Q ss_pred ccccccchhhHHHHhCCCEEEEEccccccCHHH--HHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcC
Q psy2887 474 IGYEEGGYLTEIVRRKPYSLILLDEIEKANSDV--FNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKG 551 (899)
Q Consensus 474 ~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~--~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~ 551 (899)
....+ ..+++|||||++.+.... ++.|+.+++.-. ......+|+++|.....+.
T Consensus 98 --------~~~~~--~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~ii~~~~~~~~~~~----- 153 (242)
T 3bos_A 98 --------LLEGL--EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVA---------EQKRGSLIVSASASPMEAG----- 153 (242)
T ss_dssp --------GGTTG--GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHH---------HHCSCEEEEEESSCTTTTT-----
T ss_pred --------HHHhc--cCCCEEEEeccccccCCHHHHHHHHHHHHHHH---------HcCCCeEEEEcCCCHHHHH-----
Confidence 01111 235699999999998765 888888876411 1122347777776554221
Q ss_pred cHHHHHHHHHHHHhhcCChhHhhccC--eEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHh
Q psy2887 552 DKEIIKLAVMNEVKIYFRPEFINRID--DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISN 624 (899)
Q Consensus 552 ~~~~~~~~~~~~l~~~~~~~l~~R~~--~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 624 (899)
.+.+.+.+||. .++.|.+++.+++.+++...+. ..+ +.+++++++++.+
T Consensus 154 ---------------~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~-------~~~--~~~~~~~~~~l~~ 204 (242)
T 3bos_A 154 ---------------FVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAA-------MRG--LQLPEDVGRFLLN 204 (242)
T ss_dssp ---------------CCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHH-------HTT--CCCCHHHHHHHHH
T ss_pred ---------------HhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHH-------HcC--CCCCHHHHHHHHH
Confidence 23467889996 7999999999999999887763 233 5789999999987
No 132
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.44 E-value=5e-13 Score=142.48 Aligned_cols=145 Identities=16% Similarity=0.285 Sum_probs=105.8
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHh--cc-CCCceEEecccccccccchhhccC
Q psy2887 392 GQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACI--FN-NEESIIRIDMSEFIEKHSISRLIG 468 (899)
Q Consensus 392 gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l--~~-~~~~~~~~~~~~~~~~~~~~~l~g 468 (899)
||+++++.+...+...+ .+++||+||||||||++|+++|+.+ +. ....++.++.+.
T Consensus 1 g~~~~~~~L~~~i~~~~---------~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~------------ 59 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE---------GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG------------ 59 (305)
T ss_dssp ---CHHHHHHHHHHTCS---------SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS------------
T ss_pred ChHHHHHHHHHHHHCCC---------CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc------------
Confidence 78889999999887533 2379999999999999999999864 11 123444444321
Q ss_pred CCCCcccccccchhhHHHHhCC----CEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhh
Q psy2887 469 APPGYIGYEEGGYLTEIVRRKP----YSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDK 544 (899)
Q Consensus 469 ~~~~~~g~~~~~~l~~~~~~~~----~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~ 544 (899)
..++.+..+.+.+.+...| +.|+||||+|.+....+|.|++.||+ +..+++||++|+...
T Consensus 60 ---~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEe-----------p~~~t~fIl~t~~~~-- 123 (305)
T 2gno_A 60 ---ENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEE-----------PPEYAVIVLNTRRWH-- 123 (305)
T ss_dssp ---SCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHS-----------CCTTEEEEEEESCGG--
T ss_pred ---CCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhC-----------CCCCeEEEEEECChH--
Confidence 0223233344555554443 57999999999999999999999998 457888999987532
Q ss_pred hhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHH
Q psy2887 545 IKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQL 598 (899)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l 598 (899)
.+.|.+.+| ++.|.|++.+++.+.+...+
T Consensus 124 ----------------------kl~~tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 124 ----------------------YLLPTIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ----------------------GSCHHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred ----------------------hChHHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 367789999 89999999999999877655
No 133
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.43 E-value=1.1e-12 Score=142.34 Aligned_cols=169 Identities=20% Similarity=0.223 Sum_probs=121.0
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHH-hcCCCEEEE
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS-NNQKDIIIF 90 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~-~~~~~~iL~ 90 (899)
..+++||+||||||||++|+++++.+.... ....++.++++.... .......+........ ....+.|++
T Consensus 37 ~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~vli 107 (319)
T 2chq_A 37 NIPHLLFSGPPGTGKTATAIALARDLFGEN-----WRDNFIEMNASDERG----IDVVRHKIKEFARTAPIGGAPFKIIF 107 (319)
T ss_dssp CCCCEEEESSSSSSHHHHHHHHHHHHHTTC-----HHHHCEEEETTSTTC----TTTSSHHHHHHHHSCCSSSCCCEEEE
T ss_pred CCCeEEEECcCCcCHHHHHHHHHHHhcCCc-----ccCCeEEEeCccccC----hHHHHHHHHHHHhcCCCCCCCceEEE
Confidence 334699999999999999999999874321 023456666544321 1111112222211110 114478999
Q ss_pred EccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHHHHHHHHHhhh
Q psy2887 91 IDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQ 168 (899)
Q Consensus 91 iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~il~~~~ 168 (899)
|||+|.+.. ...+.|...++. ..+++|++||... .+.+++.+||..+.|++|+.+++.++++..+
T Consensus 108 iDe~~~l~~--------~~~~~L~~~le~~~~~~~~i~~~~~~~-----~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~ 174 (319)
T 2chq_A 108 LDEADALTA--------DAQAALRRTMEMYSKSCRFILSCNYVS-----RIIEPIQSRCAVFRFKPVPKEAMKKRLLEIC 174 (319)
T ss_dssp EETGGGSCH--------HHHHTTGGGTSSSSSSEEEEEEESCGG-----GSCHHHHTTCEEEECCCCCHHHHHHHHHHHH
T ss_pred EeCCCcCCH--------HHHHHHHHHHHhcCCCCeEEEEeCChh-----hcchHHHhhCeEEEecCCCHHHHHHHHHHHH
Confidence 999999854 456778888875 5688999998877 7899999999999999999999999998877
Q ss_pred hhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHH
Q psy2887 169 KKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAA 212 (899)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~ 212 (899)
.. .++.++++++..++..+.+.+. .+...++.++
T Consensus 175 ~~----~~~~i~~~~l~~l~~~~~G~~r------~~~~~l~~~~ 208 (319)
T 2chq_A 175 EK----EGVKITEDGLEALIYISGGDFR------KAINALQGAA 208 (319)
T ss_dssp HT----TCCCBCHHHHHHHHHTTTTCHH------HHHHHHHHHH
T ss_pred HH----cCCCCCHHHHHHHHHHcCCCHH------HHHHHHHHHH
Confidence 65 5678999999999988877554 6666666554
No 134
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.43 E-value=4.3e-13 Score=149.77 Aligned_cols=217 Identities=13% Similarity=0.111 Sum_probs=139.0
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccC------CCceEEeccccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN------EESIIRIDMSEFIEKH 461 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~------~~~~~~~~~~~~~~~~ 461 (899)
..++|++..++.+...+.....+ ....+++|+||||||||++|+++++.+... +.+++.++|....+..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~-----~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 93 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRG-----EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPY 93 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSS-----CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-----CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHH
Confidence 57889999999998888654211 112269999999999999999999988432 6788899987755432
Q ss_pred c----hhhccCCCCCccccccc---chhhHHHHhC-CCEEEEEccccccCHH--HHHHHHHhhcCCceecCCCceEe-cC
Q psy2887 462 S----ISRLIGAPPGYIGYEEG---GYLTEIVRRK-PYSLILLDEIEKANSD--VFNILLQILDDGRLTDNRGRTIN-FR 530 (899)
Q Consensus 462 ~----~~~l~g~~~~~~g~~~~---~~l~~~~~~~-~~~vl~lDEid~~~~~--~~~~Ll~~le~g~~~~~~g~~~~-~~ 530 (899)
. +...+|......|.... ..+...+... .+.||||||++.+... .++.|..+++..... . ..
T Consensus 94 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~-------~~~~ 166 (387)
T 2v1u_A 94 RVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQEL-------GDRV 166 (387)
T ss_dssp HHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----------
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhc-------CCCc
Confidence 1 11222333222332222 2233344333 3569999999999876 677777666531100 0 24
Q ss_pred CeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCe-EEEecCCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy2887 531 NTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNRKNILSIANIQLNILKNKLLKMN 609 (899)
Q Consensus 531 ~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~ 609 (899)
+.++|++||...- ...+.+.+.+||.. .+.|+|++.+++.+++...+... .
T Consensus 167 ~~~~I~~t~~~~~---------------------~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~-------~ 218 (387)
T 2v1u_A 167 WVSLVGITNSLGF---------------------VENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEA-------F 218 (387)
T ss_dssp -CEEEEECSCSTT---------------------SSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHH-------B
T ss_pred eEEEEEEECCCch---------------------HhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhh-------c
Confidence 6788899986531 23467889999975 89999999999999988777421 1
Q ss_pred cceeecHHHHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 610 MDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 610 ~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
....+++++++.+.+..... -|+++.....+..+.
T Consensus 219 ~~~~~~~~~~~~l~~~~~~~---~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 219 NPGVLDPDVVPLCAALAARE---HGDARRALDLLRVAG 253 (387)
T ss_dssp CTTTBCSSHHHHHHHHHHSS---SCCHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHh---ccCHHHHHHHHHHHH
Confidence 12567889999988733211 144444333355444
No 135
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.43 E-value=8.4e-13 Score=140.05 Aligned_cols=187 Identities=21% Similarity=0.342 Sum_probs=120.3
Q ss_pred ccCCChHHHHHHHHHHHHHhh-------cCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSR-------SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEK 460 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~-------~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~ 460 (899)
++++|+++++..+........ .++. -+. .++|+||||||||+++++|+..+ ..+++.+++.++...
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~---~~~-gvll~Gp~GtGKTtl~~~i~~~~---~~~~i~~~~~~~~~~ 112 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGAR---IPK-GVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVEM 112 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCC---CCC-EEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHHHHHHS
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCC---CCC-eEEEECCCcChHHHHHHHHHHHc---CCCEEEecHHHHHHH
Confidence 567888888888776664432 1221 122 49999999999999999999998 678888887665432
Q ss_pred cchhhccCCCCCcccccc--cchhhHHHHhCCCEEEEEccccccC--------------HHHHHHHHHhhcCCceecCCC
Q psy2887 461 HSISRLIGAPPGYIGYEE--GGYLTEIVRRKPYSLILLDEIEKAN--------------SDVFNILLQILDDGRLTDNRG 524 (899)
Q Consensus 461 ~~~~~l~g~~~~~~g~~~--~~~l~~~~~~~~~~vl~lDEid~~~--------------~~~~~~Ll~~le~g~~~~~~g 524 (899)
+.+... .+.+++......++++|+||++.+. ....+.++..++.+.
T Consensus 113 ------------~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~------ 174 (278)
T 1iy2_A 113 ------------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE------ 174 (278)
T ss_dssp ------------TTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC------
T ss_pred ------------HhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC------
Confidence 111111 1234555555567999999998652 234556666666542
Q ss_pred ceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhh--ccCeEEEecCCCHHHHHHHHHHHHHHHH
Q psy2887 525 RTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNILK 602 (899)
Q Consensus 525 ~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~~~~~~i~~~~l~~~~ 602 (899)
.....++++++|.+. .+++.+++ ||+..+.|++++.+++.+|++.++.
T Consensus 175 ---~~~~~i~~a~t~~p~------------------------~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--- 224 (278)
T 1iy2_A 175 ---KDTAIVVMAATNRPD------------------------ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--- 224 (278)
T ss_dssp ---TTCCEEEEEEESCTT------------------------SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT---
T ss_pred ---CCCCEEEEEecCCch------------------------hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc---
Confidence 123456777777542 25677775 8999999999999999999875541
Q ss_pred HHHHhcCcceeecHHH-HHHHHhcccCccccccccccc
Q psy2887 603 NKLLKMNMDLKISKAA-LKKISNIGFDLIYGARDVHGC 639 (899)
Q Consensus 603 ~~~~~~~~~~~~~~~~-~~~L~~~~~~~~~~~~di~~~ 639 (899)
+ ..+++++ +..++. ....+..+||...
T Consensus 225 ------~--~~~~~~~~~~~la~--~~~G~~~~dl~~l 252 (278)
T 1iy2_A 225 ------G--KPLAEDVDLALLAK--RTPGFVGADLENL 252 (278)
T ss_dssp ------T--SCBCTTCCHHHHHH--TCTTCCHHHHHHH
T ss_pred ------c--CCCCcccCHHHHHH--HcCCCCHHHHHHH
Confidence 1 2333333 455554 2222333677766
No 136
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.43 E-value=9.6e-13 Score=146.15 Aligned_cols=171 Identities=22% Similarity=0.302 Sum_probs=110.5
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchH-HHHHHHHHHHHH---hcCCC
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEF-EDRLKKILKEIS---NNQKD 86 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~-~~~l~~~~~~~~---~~~~~ 86 (899)
+...++||+||||||||++|+++|+.+ +.+++.+++..+.. ..+.|.. +..+..++.... ....+
T Consensus 70 ~~~~~ill~Gp~GtGKT~la~~la~~l----------~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 138 (376)
T 1um8_A 70 LSKSNILLIGPTGSGKTLMAQTLAKHL----------DIPIAISDATSLTE-AGYVGEDVENILTRLLQASDWNVQKAQK 138 (376)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEEGGGCC---------CTHHHHHHHHHTTTCHHHHTT
T ss_pred cCCCCEEEECCCCCCHHHHHHHHHHHh----------CCCEEEecchhhhh-cCcCCccHHHHHHHHHhhccchhhhcCC
Confidence 356799999999999999999999988 77888888876542 2244432 334455544321 01236
Q ss_pred EEEEEccccccccCCCC------CchhhHHHhhhhhhcCC-----------------------ceEEEEecChhHHHH--
Q psy2887 87 IIIFIDELHTMIGTGKV------EGSIDAGNMLKPELSRG-----------------------ELHCIGATTLNEYRQ-- 135 (899)
Q Consensus 87 ~iL~iDEi~~l~~~~~~------~~~~~~~~~l~~~l~~~-----------------------~v~vI~at~~~~~~~-- 135 (899)
+||||||++.+...+.. .....+.+.|+..|+.. ++.+|++||......
T Consensus 139 ~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l 218 (376)
T 1um8_A 139 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEII 218 (376)
T ss_dssp SEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHT
T ss_pred eEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHH
Confidence 79999999999875321 11123677888888743 357788776321111
Q ss_pred ----------------------------------hhhcCHHHHhcccc-ccccCCCHHHHHHHHHh----hhhhhhc---
Q psy2887 136 ----------------------------------YIEKDAAFERRFQK-ILVEEPDIEETISILRG----LQKKYEV--- 173 (899)
Q Consensus 136 ----------------------------------~~~ld~al~~Rf~~-i~l~~p~~~e~~~il~~----~~~~~~~--- 173 (899)
...+.|+|.+||+. +.|++++.++...|+.. ++.++..
T Consensus 219 ~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~ 298 (376)
T 1um8_A 219 KKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFK 298 (376)
T ss_dssp TTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHH
T ss_pred HHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 22467999999964 88999999999999973 4433321
Q ss_pred --ccCCCCCHHHHHHHHhhhh
Q psy2887 174 --HHGVEITDPAIVAASELSY 192 (899)
Q Consensus 174 --~~~~~~~~~~~~~~~~~~~ 192 (899)
...+.++++++..+++.+.
T Consensus 299 ~~~~~~~~~~~a~~~l~~~~~ 319 (376)
T 1um8_A 299 MDEVDLIFEEEAIKEIAQLAL 319 (376)
T ss_dssp TTTCEEEECHHHHHHHHHHHH
T ss_pred hcCceEEECHHHHHHHHHHhc
Confidence 1245789999999988753
No 137
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.43 E-value=1.3e-12 Score=148.61 Aligned_cols=171 Identities=20% Similarity=0.299 Sum_probs=115.2
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhcc-------CCCceEEecccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFN-------NEESIIRIDMSEFIEK 460 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~-------~~~~~~~~~~~~~~~~ 460 (899)
..++|++..++.+...+.+.. .+++||+||||||||++|+++|+.+.. .+.+++.++++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~---------~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~----- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT---------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG----- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS---------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--------
T ss_pred CCccCcHHHHHHHHHHHhccC---------CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-----
Confidence 468999999999998886522 237999999999999999999999843 24567777665
Q ss_pred cchhhccCCCCCccccccc--chhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEec
Q psy2887 461 HSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTS 538 (899)
Q Consensus 461 ~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ts 538 (899)
..|.|..+. +.++..+....++||||| ...+.++.|++.|+.| +.++|++|
T Consensus 246 ----------~~~~g~~e~~~~~~~~~~~~~~~~iLfiD----~~~~a~~~L~~~L~~g-------------~v~vI~at 298 (468)
T 3pxg_A 246 ----------TKYRGEFEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLARG-------------ELQCIGAT 298 (468)
T ss_dssp -----------------CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTSS-------------SCEEEEEC
T ss_pred ----------ccccchHHHHHHHHHHHHHhcCCeEEEEe----CchhHHHHHHHhhcCC-------------CEEEEecC
Confidence 113443332 356666677778899999 5667889999999863 56788999
Q ss_pred CCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHH
Q psy2887 539 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAA 618 (899)
Q Consensus 539 n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~ 618 (899)
|...-. . .-.+++.|.+|| .+|.|.+|+.+++.+|+...+.++.. ...+.+++++
T Consensus 299 ~~~e~~--~-----------------~~~~~~al~~Rf-~~i~v~~p~~e~~~~iL~~~~~~~~~-----~~~~~i~~~a 353 (468)
T 3pxg_A 299 TLDEYR--K-----------------YIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEA-----HHRVSITDDA 353 (468)
T ss_dssp CTTTTH--H-----------------HHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGG-----GSSCSCCHHH
T ss_pred CHHHHH--H-----------------HhhcCHHHHHhC-ccceeCCCCHHHHHHHHHHHHHHHHH-----hcCCCCCHHH
Confidence 865410 0 012578899999 57999999999999998866533211 1236789999
Q ss_pred HHHHHh
Q psy2887 619 LKKISN 624 (899)
Q Consensus 619 ~~~L~~ 624 (899)
+..++.
T Consensus 354 l~~l~~ 359 (468)
T 3pxg_A 354 IEAAVK 359 (468)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999887
No 138
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.42 E-value=6e-13 Score=150.04 Aligned_cols=182 Identities=16% Similarity=0.192 Sum_probs=119.5
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEEc
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFID 92 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~iD 92 (899)
.++++|+|||||||||||+++++.+... ..+..++.+++..+. ....+.........|.... ...+.|||||
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~-----~~~~~v~~v~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~vL~ID 201 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQN-----EPDLRVMYITSEKFL--NDLVDSMKEGKLNEFREKY-RKKVDILLID 201 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHH-----CCSSCEEEEEHHHHH--HHHHHHHHTTCHHHHHHHH-TTTCSEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHh-----CCCCeEEEeeHHHHH--HHHHHHHHcccHHHHHHHh-cCCCCEEEEe
Confidence 6789999999999999999999987432 115667778776543 1111111110011122221 1147799999
Q ss_pred cccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhccc---cccccCCCHHHHHHHHHhhhh
Q psy2887 93 ELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQ---KILVEEPDIEETISILRGLQK 169 (899)
Q Consensus 93 Ei~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~---~i~l~~p~~~e~~~il~~~~~ 169 (899)
|++.+.... .........+....+.+..++|++.+++. ....++++|.+||. .+.+++|+.+++.+|++..+.
T Consensus 202 Ei~~l~~~~--~~q~~l~~~l~~l~~~~~~iIitt~~~~~--~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~ 277 (440)
T 2z4s_A 202 DVQFLIGKT--GVQTELFHTFNELHDSGKQIVICSDREPQ--KLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLE 277 (440)
T ss_dssp CGGGGSSCH--HHHHHHHHHHHHHHTTTCEEEEEESSCGG--GCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred CcccccCCh--HHHHHHHHHHHHHHHCCCeEEEEECCCHH--HHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 999987531 11122333444445666666665555444 11237899999995 589999999999999998776
Q ss_pred hhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhh
Q psy2887 170 KYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIK 216 (899)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~ 216 (899)
. .++.++++++..++..+.+.+. .+..+++.+...+.
T Consensus 278 ~----~~~~i~~e~l~~la~~~~gn~R------~l~~~L~~~~~~a~ 314 (440)
T 2z4s_A 278 I----EHGELPEEVLNFVAENVDDNLR------RLRGAIIKLLVYKE 314 (440)
T ss_dssp H----HTCCCCTTHHHHHHHHCCSCHH------HHHHHHHHHHHHHH
T ss_pred H----cCCCCCHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHH
Confidence 5 4678999999999988765443 67777777665544
No 139
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.42 E-value=7.7e-13 Score=146.31 Aligned_cols=101 Identities=18% Similarity=0.291 Sum_probs=73.6
Q ss_pred CEEEEEccccccccCCCCCch----hhHHHhhhhhhcC------------CceEEEEec-----ChhHHHHhhhcCHHHH
Q psy2887 86 DIIIFIDELHTMIGTGKVEGS----IDAGNMLKPELSR------------GELHCIGAT-----TLNEYRQYIEKDAAFE 144 (899)
Q Consensus 86 ~~iL~iDEi~~l~~~~~~~~~----~~~~~~l~~~l~~------------~~v~vI~at-----~~~~~~~~~~ld~al~ 144 (899)
.+||++||+|.+.....+.+. ..+++.|++.++. .++.+|+++ ++. .+.|.|+
T Consensus 251 ~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~------dlipel~ 324 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPS------DLIPELQ 324 (444)
T ss_dssp HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGG------GSCHHHH
T ss_pred CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChh------hcchHHh
Confidence 348999999999876432211 2255688888864 467889887 444 3569999
Q ss_pred hcccc-ccccCCCHHHHHHHHH----hhhhhhhc-----ccCCCCCHHHHHHHHhhhh
Q psy2887 145 RRFQK-ILVEEPDIEETISILR----GLQKKYEV-----HHGVEITDPAIVAASELSY 192 (899)
Q Consensus 145 ~Rf~~-i~l~~p~~~e~~~il~----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 192 (899)
+||+. |.|+.++.++..+|+. .+.++|.. ...+.++++++..+++.+.
T Consensus 325 ~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~ 382 (444)
T 1g41_A 325 GRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAF 382 (444)
T ss_dssp TTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHH
T ss_pred cccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHH
Confidence 99997 8999999999999993 34444432 2235799999999988754
No 140
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.42 E-value=1.5e-12 Score=135.15 Aligned_cols=170 Identities=19% Similarity=0.188 Sum_probs=119.9
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCcc--------------CCCeEEEEehhhhhcCcccCchHHHHHHHHHHH
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSL--------------LSKKILLLDIALLLAGTKYRGEFEDRLKKILKE 79 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l--------------~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~ 79 (899)
..++|+||||+|||++++.+++.+......... ....++.++... ......++.++..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 117 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS--------RTKVEDTRDLLDN 117 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTC--------GGGHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcc--------cccHHHHHHHHHH
Confidence 468999999999999999999988543211000 001223222211 1122345556555
Q ss_pred HH---hcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhccccccccC
Q psy2887 80 IS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEE 154 (899)
Q Consensus 80 ~~---~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~ 154 (899)
+. ....+.+|+|||++.+.. ...+.|...++. ..+.+|++|+... .+++++.+|+..+.+++
T Consensus 118 ~~~~~~~~~~~vlviDe~~~l~~--------~~~~~l~~~l~~~~~~~~~i~~t~~~~-----~~~~~l~~r~~~i~l~~ 184 (250)
T 1njg_A 118 VQYAPARGRFKVYLIDEVHMLSR--------HSFNALLKTLEEPPEHVKFLLATTDPQ-----KLPVTILSRCLQFHLKA 184 (250)
T ss_dssp CCCSCSSSSSEEEEEETGGGSCH--------HHHHHHHHHHHSCCTTEEEEEEESCGG-----GSCHHHHTTSEEEECCC
T ss_pred hhhchhcCCceEEEEECcccccH--------HHHHHHHHHHhcCCCceEEEEEeCChH-----hCCHHHHHHhhhccCCC
Confidence 43 123578999999999843 455667777764 4688888888876 78899999998899999
Q ss_pred CCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 155 PDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 155 p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
|+.++..++++..+.. .+..++++++..+++.+.+. |..+..+++.++..
T Consensus 185 l~~~e~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~G~------~~~~~~~~~~~~~~ 234 (250)
T 1njg_A 185 LDVEQIRHQLEHILNE----EHIAHEPRALQLLARAAEGS------LRDALSLTDQAIAS 234 (250)
T ss_dssp CCHHHHHHHHHHHHHH----TTCCBCHHHHHHHHHHHTTC------HHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcCCC------HHHHHHHHHHHHhc
Confidence 9999999999887765 45678999999999988663 45788888777543
No 141
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.41 E-value=3.7e-13 Score=151.74 Aligned_cols=175 Identities=18% Similarity=0.265 Sum_probs=119.1
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccC--CCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNN--EESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLD 497 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lD 497 (899)
+++|+||||||||++|+++++.+... +.+++.+++..+..... ..+.. .....+..... ..++|||||
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~-~~~~~--------~~~~~~~~~~~-~~~~vL~ID 201 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLV-DSMKE--------GKLNEFREKYR-KKVDILLID 201 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHH-HHHHT--------TCHHHHHHHHT-TTCSEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHH-HHHHc--------ccHHHHHHHhc-CCCCEEEEe
Confidence 69999999999999999999998543 67888888877643210 00000 00011111111 146799999
Q ss_pred cccccCH--HHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhc
Q psy2887 498 EIEKANS--DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINR 575 (899)
Q Consensus 498 Eid~~~~--~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R 575 (899)
|++.+.. ..++.|+..++.-. ..+..+|+||+..+..+ ..+.+.|++|
T Consensus 202 Ei~~l~~~~~~q~~l~~~l~~l~----------~~~~~iIitt~~~~~~l--------------------~~l~~~L~sR 251 (440)
T 2z4s_A 202 DVQFLIGKTGVQTELFHTFNELH----------DSGKQIVICSDREPQKL--------------------SEFQDRLVSR 251 (440)
T ss_dssp CGGGGSSCHHHHHHHHHHHHHHH----------TTTCEEEEEESSCGGGC--------------------SSCCHHHHHH
T ss_pred CcccccCChHHHHHHHHHHHHHH----------HCCCeEEEEECCCHHHH--------------------HHHHHHHHhh
Confidence 9999986 78888888886411 13456777888665533 2367889999
Q ss_pred cC--eEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCcccccccccccHHHHHHHHHH
Q psy2887 576 ID--DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKK 649 (899)
Q Consensus 576 ~~--~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l~~ 649 (899)
|. .++.+.|++.+++.+|+...+.. .+ +.++++++++|+... ...+|++.+. |+++...
T Consensus 252 ~~~g~~i~l~~p~~e~r~~iL~~~~~~-------~~--~~i~~e~l~~la~~~---~gn~R~l~~~---L~~~~~~ 312 (440)
T 2z4s_A 252 FQMGLVAKLEPPDEETRKSIARKMLEI-------EH--GELPEEVLNFVAENV---DDNLRRLRGA---IIKLLVY 312 (440)
T ss_dssp HHSSBCCBCCCCCHHHHHHHHHHHHHH-------HT--CCCCTTHHHHHHHHC---CSCHHHHHHH---HHHHHHH
T ss_pred ccCCeEEEeCCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHhc---CCCHHHHHHH---HHHHHHH
Confidence 95 68999999999999998877642 23 578899999998732 2445555555 5555543
No 142
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.41 E-value=1.2e-12 Score=144.31 Aligned_cols=166 Identities=20% Similarity=0.285 Sum_probs=117.9
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHh-----------
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN----------- 82 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~----------- 82 (899)
+++||+||||||||++|+++|+.+.... .....+..++++... +. ..+++.+.....
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~~~~----~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~~~~~~ 126 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELYGPD----LMKSRILELNASDER------GI--SIVREKVKNFARLTVSKPSKHDL 126 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHHHH----HHTTSEEEECSSSCC------CH--HHHTTHHHHHHHSCCCCCCTTHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCc----ccccceEEEcccccc------ch--HHHHHHHHHHhhhcccccchhhc
Confidence 5699999999999999999999873210 002345555543321 11 112222222211
Q ss_pred ----cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhccccccccCCC
Q psy2887 83 ----NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPD 156 (899)
Q Consensus 83 ----~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~ 156 (899)
...+.||||||++.+.. ...+.|+..++. ....+|++||.+. .+.+++.+||..+.|++|+
T Consensus 127 ~~~~~~~~~vliiDE~~~l~~--------~~~~~Ll~~le~~~~~~~~il~~~~~~-----~l~~~l~sR~~~i~~~~~~ 193 (353)
T 1sxj_D 127 ENYPCPPYKIIILDEADSMTA--------DAQSALRRTMETYSGVTRFCLICNYVT-----RIIDPLASQCSKFRFKALD 193 (353)
T ss_dssp HHSCCCSCEEEEETTGGGSCH--------HHHHHHHHHHHHTTTTEEEEEEESCGG-----GSCHHHHHHSEEEECCCCC
T ss_pred ccCCCCCceEEEEECCCccCH--------HHHHHHHHHHHhcCCCceEEEEeCchh-----hCcchhhccCceEEeCCCC
Confidence 23457999999999864 345667777763 3567778888877 7899999999999999999
Q ss_pred HHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 157 IEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 157 ~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
.++...+++..+.. .++.++++++..+++.+.+.+. .++.+++.++..
T Consensus 194 ~~~~~~~l~~~~~~----~~~~i~~~~l~~l~~~~~G~~r------~~~~~l~~~~~~ 241 (353)
T 1sxj_D 194 ASNAIDRLRFISEQ----ENVKCDDGVLERILDISAGDLR------RGITLLQSASKG 241 (353)
T ss_dssp HHHHHHHHHHHHHT----TTCCCCHHHHHHHHHHTSSCHH------HHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCCHH------HHHHHHHHHHHh
Confidence 99999999887764 5678999999999999876543 777777766544
No 143
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A
Probab=99.41 E-value=2.1e-13 Score=142.60 Aligned_cols=118 Identities=12% Similarity=0.147 Sum_probs=85.0
Q ss_pred cccccccccHHHHHHHHHHhh---ccC-CccceeeccccCCCCceEehhHHHHHhcC--CccEEEccCChHhHHhHhhhc
Q psy2887 631 YGARDVHGCKKSLSILLKKIH---KKS-PEANFIFLGDLINKGPQSLDTLRMVYSMR--NYAKIVLGNHEIHLLDVLINI 704 (899)
Q Consensus 631 ~~~~di~~~~~~l~~~l~~~~---~~~-~~~~li~~GD~~d~g~~~~~~~~~l~~~~--~~~~~v~GNHe~~~l~~~~~~ 704 (899)
..++|+|+++..+.++++.+. ... ..|.++++||++++|+.+.++++++.++. ..+.+|+||||.++..+....
T Consensus 5 ~~isD~H~~~~~l~~~l~~~~~~~~~~~~~d~ii~~GD~~~~g~~~~~~~~~l~~l~~~~~~~~v~GNhD~~~~~~~~~~ 84 (252)
T 1nnw_A 5 AVLANIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIEVIKDLTKKENVKIIRGKYDQIIAMSDPHA 84 (252)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHHHTTCCEEEEEEESCSSSSSSCHHHHHHHHHHHHHHSCEEEECCHHHHHHHHSCTTC
T ss_pred EEEeecCCCHHHHHHHHHHHHhhhhccCCCCEEEEeCccCCCCCCHHHHHHHHHhhHhhcCeeEEecchHHHhhcccccc
Confidence 568999999999999998887 432 46899999999999999989999998864 458999999999887643221
Q ss_pred ccCch---------hchHHHhhCCcChHHHHHHHhcCCceEEeC----CEEEEeccc
Q psy2887 705 NKKSK---------LDTFDDILDAPDKKKLVSWLRTQPLAIYYK----KYLMIHAGV 748 (899)
Q Consensus 705 ~~~~~---------~~~~~~~~~~~~~~~~~~~l~~lp~~~~~~----~~~~vHAg~ 748 (899)
..... ......|......++..+||+++|.....+ +++++||+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~lp~~~~~~~~~~~i~~~H~~p 141 (252)
T 1nnw_A 85 TDPGYIDKLELPGHVKKALKFTWEKLGHEGREYLRDLPIYLVDKIGGNEVFGVYGSP 141 (252)
T ss_dssp SSSGGGGGSSCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCEEEEETTEEEEEESSCS
T ss_pred CCcccccchhhhHHHHHHHHHHHHHCCHHHHHHHHhCCceEEEeeCCcEEEEEcCCC
Confidence 10000 000011222223456789999999877642 689999986
No 144
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.40 E-value=2.5e-12 Score=143.51 Aligned_cols=195 Identities=16% Similarity=0.143 Sum_probs=126.9
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcC--------------cccCch-HHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG--------------TKYRGE-FEDRLKK 75 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~--------------~~~~g~-~~~~l~~ 75 (899)
....+++|+||||||||++++.+++.+..... ..-.+..++.+++...... ....|. ....+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 120 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARAS-SLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYER 120 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHH-HHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHh-ccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence 45678999999999999999999988743100 0000456677775432100 001122 2223445
Q ss_pred HHHHHHhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhc----CCceEEEEecChhHHHHhhhcCHHHHhccc--c
Q psy2887 76 ILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS----RGELHCIGATTLNEYRQYIEKDAAFERRFQ--K 149 (899)
Q Consensus 76 ~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~----~~~v~vI~at~~~~~~~~~~ld~al~~Rf~--~ 149 (899)
++..+...+.+.||||||+|.+.... ..++....+...++ ...+.+|++||..++. ..+++++.+||. .
T Consensus 121 l~~~l~~~~~~~vlilDEi~~l~~~~---~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~--~~l~~~l~~r~~~~~ 195 (387)
T 2v1u_A 121 LVKRLSRLRGIYIIVLDEIDFLPKRP---GGQDLLYRITRINQELGDRVWVSLVGITNSLGFV--ENLEPRVKSSLGEVE 195 (387)
T ss_dssp HHHHHTTSCSEEEEEEETTTHHHHST---THHHHHHHHHHGGGCC-----CEEEEECSCSTTS--SSSCHHHHTTTTSEE
T ss_pred HHHHHhccCCeEEEEEccHhhhcccC---CCChHHHhHhhchhhcCCCceEEEEEEECCCchH--hhhCHHHHhcCCCeE
Confidence 55555444558899999999997532 12344444444444 5678999999987421 267999999994 5
Q ss_pred ccccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhh
Q psy2887 150 ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIK 216 (899)
Q Consensus 150 i~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~ 216 (899)
+.|++|+.+++.++++..+... ..+..++++++..+++.+.+. .+.|..+.+++..++..+.
T Consensus 196 i~l~~l~~~~~~~il~~~~~~~--~~~~~~~~~~~~~l~~~~~~~---~G~~r~~~~~l~~a~~~a~ 257 (387)
T 2v1u_A 196 LVFPPYTAPQLRDILETRAEEA--FNPGVLDPDVVPLCAALAARE---HGDARRALDLLRVAGEIAE 257 (387)
T ss_dssp CCBCCCCHHHHHHHHHHHHHHH--BCTTTBCSSHHHHHHHHHHSS---SCCHHHHHHHHHHHHHHHH
T ss_pred EeeCCCCHHHHHHHHHHHHHhh--ccCCCCCHHHHHHHHHHHHHh---ccCHHHHHHHHHHHHHHHH
Confidence 9999999999999998877531 134678899999999888721 1234578888888765543
No 145
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.39 E-value=1.2e-11 Score=134.54 Aligned_cols=179 Identities=18% Similarity=0.331 Sum_probs=121.0
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhcc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 467 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (899)
..++|++.+++.+...+...... ..+..+++|+|||||||||+|+++|..+ +.++...+++.+...
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~----~~~~~~~ll~Gp~G~GKTTLa~~ia~~l---~~~~~~~sg~~~~~~------- 90 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMR----GEVLDHVLLAGPPGLGKTTLAHIIASEL---QTNIHVTSGPVLVKQ------- 90 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHH----TCCCCCEEEESSTTSSHHHHHHHHHHHH---TCCEEEEETTTCCSH-------
T ss_pred HHccCcHHHHHHHHHHHHHHHhc----CCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEechHhcCH-------
Confidence 45779999999998888754211 1222369999999999999999999998 555554443322111
Q ss_pred CCCCCcccccccchhhHHHHh-CCCEEEEEccccccCHHHHHHHHHhhcCCcee-----cCCCce--EecCCeEEEEecC
Q psy2887 468 GAPPGYIGYEEGGYLTEIVRR-KPYSLILLDEIEKANSDVFNILLQILDDGRLT-----DNRGRT--INFRNTIIVMTSN 539 (899)
Q Consensus 468 g~~~~~~g~~~~~~l~~~~~~-~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~-----~~~g~~--~~~~~~~iI~tsn 539 (899)
..+...... ...+|+|+||++.+.+.+++.|+..++..... ....+. .......+|.+++
T Consensus 91 ------------~~l~~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~ 158 (334)
T 1in4_A 91 ------------GDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT 158 (334)
T ss_dssp ------------HHHHHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEES
T ss_pred ------------HHHHHHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecC
Confidence 112222222 34579999999999999999999888764321 000011 1223455666666
Q ss_pred CChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHH
Q psy2887 540 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAAL 619 (899)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~ 619 (899)
.. ..+++.+.+||...+.|.|++.+++.+++...... .+ +.++++++
T Consensus 159 ~~------------------------~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~-------~~--~~~~~~~~ 205 (334)
T 1in4_A 159 RS------------------------GLLSSPLRSRFGIILELDFYTVKELKEIIKRAASL-------MD--VEIEDAAA 205 (334)
T ss_dssp CG------------------------GGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH-------TT--CCBCHHHH
T ss_pred Cc------------------------ccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHH-------cC--CCcCHHHH
Confidence 42 23678899999888999999999999998776532 23 57889999
Q ss_pred HHHHhc
Q psy2887 620 KKISNI 625 (899)
Q Consensus 620 ~~L~~~ 625 (899)
.++++.
T Consensus 206 ~~ia~~ 211 (334)
T 1in4_A 206 EMIAKR 211 (334)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999873
No 146
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.39 E-value=3e-13 Score=156.20 Aligned_cols=168 Identities=20% Similarity=0.216 Sum_probs=113.7
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHH---------HHHHHHHH--
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDR---------LKKILKEI-- 80 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~---------l~~~~~~~-- 80 (899)
...++||+||||||||++|+++|+.+ +..++.++++.... ... .... +..+|..+
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l----------~~~~i~in~s~~~~--~~~--~~~~i~~~~~~~~~~~~~~~~~~ 141 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQEL----------GYDILEQNASDVRS--KTL--LNAGVKNALDNMSVVGYFKHNEE 141 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHT----------TCEEEEECTTSCCC--HHH--HHHTGGGGTTBCCSTTTTTC---
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEeCCCcch--HHH--HHHHHHHHhccccHHHHHhhhhh
Confidence 45689999999999999999999998 78888888765431 000 0000 11111111
Q ss_pred --HhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHH
Q psy2887 81 --SNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIE 158 (899)
Q Consensus 81 --~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~ 158 (899)
.....+.||||||+|.+.... +...+.|...++.....+|++|+.... ..+ +.+.+|+..+.|+.|+.+
T Consensus 142 ~~~~~~~~~vliIDEid~l~~~~-----~~~l~~L~~~l~~~~~~iIli~~~~~~---~~l-~~l~~r~~~i~f~~~~~~ 212 (516)
T 1sxj_A 142 AQNLNGKHFVIIMDEVDGMSGGD-----RGGVGQLAQFCRKTSTPLILICNERNL---PKM-RPFDRVCLDIQFRRPDAN 212 (516)
T ss_dssp -CCSSTTSEEEEECSGGGCCTTS-----TTHHHHHHHHHHHCSSCEEEEESCTTS---STT-GGGTTTSEEEECCCCCHH
T ss_pred hhhccCCCeEEEEECCCccchhh-----HHHHHHHHHHHHhcCCCEEEEEcCCCC---ccc-hhhHhceEEEEeCCCCHH
Confidence 112457899999999997632 234556777776555445555544320 022 357778878999999999
Q ss_pred HHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHH
Q psy2887 159 ETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAA 212 (899)
Q Consensus 159 e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~ 212 (899)
++.++++.++.. .++.++++++..+++.+.+.++ .++++++.++
T Consensus 213 ~~~~~L~~i~~~----~~~~i~~~~l~~la~~s~GdiR------~~i~~L~~~~ 256 (516)
T 1sxj_A 213 SIKSRLMTIAIR----EKFKLDPNVIDRLIQTTRGDIR------QVINLLSTIS 256 (516)
T ss_dssp HHHHHHHHHHHH----HTCCCCTTHHHHHHHHTTTCHH------HHHHHHTHHH
T ss_pred HHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCcHH------HHHHHHHHHH
Confidence 999999877765 4677899999999998877554 6666665543
No 147
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.39 E-value=2.2e-12 Score=140.39 Aligned_cols=165 Identities=21% Similarity=0.300 Sum_probs=118.6
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHh-----cCCCE
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN-----NQKDI 87 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~-----~~~~~ 87 (899)
.+++||+||||||||++|+++++.+.... ....++.++++.... ...++..+..... ...+.
T Consensus 46 ~~~~ll~G~~G~GKT~la~~l~~~l~~~~-----~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 112 (327)
T 1iqp_A 46 MPHLLFAGPPGVGKTTAALALARELFGEN-----WRHNFLELNASDERG--------INVIREKVKEFARTKPIGGASFK 112 (327)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHHGGG-----HHHHEEEEETTCHHH--------HHTTHHHHHHHHHSCCGGGCSCE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhcCCc-----ccCceEEeeccccCc--------hHHHHHHHHHHHhhCCcCCCCCe
Confidence 34699999999999999999999873210 012355565433210 1112222222211 14578
Q ss_pred EEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHHHHHHHHH
Q psy2887 88 IIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILR 165 (899)
Q Consensus 88 iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~il~ 165 (899)
|++|||++.+.. ...+.|...++. ..+.+|++|+... .+.+++.+||..+.|++|+.++...+++
T Consensus 113 vliiDe~~~l~~--------~~~~~L~~~le~~~~~~~~i~~~~~~~-----~l~~~l~sr~~~~~~~~l~~~~~~~~l~ 179 (327)
T 1iqp_A 113 IIFLDEADALTQ--------DAQQALRRTMEMFSSNVRFILSCNYSS-----KIIEPIQSRCAIFRFRPLRDEDIAKRLR 179 (327)
T ss_dssp EEEEETGGGSCH--------HHHHHHHHHHHHTTTTEEEEEEESCGG-----GSCHHHHHTEEEEECCCCCHHHHHHHHH
T ss_pred EEEEeCCCcCCH--------HHHHHHHHHHHhcCCCCeEEEEeCCcc-----ccCHHHHhhCcEEEecCCCHHHHHHHHH
Confidence 999999999854 456677777764 5678888888877 7899999999999999999999999998
Q ss_pred hhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHH
Q psy2887 166 GLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAA 213 (899)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~ 213 (899)
..+.. .++.++++++..++..+.+.+. .+..+++.+..
T Consensus 180 ~~~~~----~~~~~~~~~~~~l~~~~~g~~r------~~~~~l~~~~~ 217 (327)
T 1iqp_A 180 YIAEN----EGLELTEEGLQAILYIAEGDMR------RAINILQAAAA 217 (327)
T ss_dssp HHHHT----TTCEECHHHHHHHHHHHTTCHH------HHHHHHHHHHT
T ss_pred HHHHh----cCCCCCHHHHHHHHHHCCCCHH------HHHHHHHHHHh
Confidence 87765 4667999999999998876443 67777766553
No 148
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.39 E-value=2e-11 Score=135.55 Aligned_cols=170 Identities=19% Similarity=0.193 Sum_probs=121.2
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCcc--------------CCCeEEEEehhhhhcCcccCchHHHHHHHHHHH
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSL--------------LSKKILLLDIALLLAGTKYRGEFEDRLKKILKE 79 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l--------------~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~ 79 (899)
..+||+||||||||++|+++|+.+.....+... ....++.++... ..... .++.+++.
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~----~~~~l~~~ 110 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS----RTKVE----DTRDLLDN 110 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTC----SCCSS----CHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccc----cCCHH----HHHHHHHH
Confidence 357999999999999999999988432111000 011234343221 01111 25566665
Q ss_pred HHh---cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhccccccccC
Q psy2887 80 ISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEE 154 (899)
Q Consensus 80 ~~~---~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~ 154 (899)
+.. .+++.|++|||+|.+.. ...+.|...++. ..+++|++|+... .+.+++.+|+..+.|++
T Consensus 111 ~~~~~~~~~~~vliiDe~~~l~~--------~~~~~Ll~~le~~~~~~~~Il~~~~~~-----~l~~~l~sr~~~i~~~~ 177 (373)
T 1jr3_A 111 VQYAPARGRFKVYLIDEVHMLSR--------HSFNALLKTLEEPPEHVKFLLATTDPQ-----KLPVTILSRCLQFHLKA 177 (373)
T ss_dssp TTSCCSSSSSEEEEEECGGGSCH--------HHHHHHHHHHHSCCSSEEEEEEESCGG-----GSCHHHHTTSEEEECCC
T ss_pred HhhccccCCeEEEEEECcchhcH--------HHHHHHHHHHhcCCCceEEEEEeCChH-----hCcHHHHhheeEeeCCC
Confidence 542 23478999999999853 456778888865 5688888888776 78899999998899999
Q ss_pred CCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 155 PDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 155 p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
|+.++..++++..++. .++.++++++..+++.+.+.. ..+..+++.+...
T Consensus 178 l~~~~~~~~l~~~~~~----~~~~~~~~a~~~l~~~~~G~~------r~~~~~l~~~~~~ 227 (373)
T 1jr3_A 178 LDVEQIRHQLEHILNE----EHIAHEPRALQLLARAAEGSL------RDALSLTDQAIAS 227 (373)
T ss_dssp CCHHHHHHHHHHHHHH----HTCCBCHHHHHHHHHHSSSCH------HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHCCCCH------HHHHHHHHHHHHh
Confidence 9999999999888765 467789999999999886654 4788888777543
No 149
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.38 E-value=3.9e-13 Score=133.96 Aligned_cols=156 Identities=20% Similarity=0.299 Sum_probs=105.9
Q ss_pred hccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhcc-------CCCceEEeccccccc
Q psy2887 387 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFN-------NEESIIRIDMSEFIE 459 (899)
Q Consensus 387 ~~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~-------~~~~~~~~~~~~~~~ 459 (899)
...++|++..++.+...+... ...+++|+||||||||++|+++++.+.. .+.+++.+++..+..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~---------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRR---------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA 91 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS---------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHT
T ss_pred ccccccchHHHHHHHHHHhcC---------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhc
Confidence 367889999999988877541 1236999999999999999999999844 356777777765532
Q ss_pred ccchhhccCCCCCccccccc--chhhHHH-HhCCCEEEEEccccccC--------HHHHHHHHHhhcCCceecCCCceEe
Q psy2887 460 KHSISRLIGAPPGYIGYEEG--GYLTEIV-RRKPYSLILLDEIEKAN--------SDVFNILLQILDDGRLTDNRGRTIN 528 (899)
Q Consensus 460 ~~~~~~l~g~~~~~~g~~~~--~~l~~~~-~~~~~~vl~lDEid~~~--------~~~~~~Ll~~le~g~~~~~~g~~~~ 528 (899)
... +.|.... ..+...+ +...+.||||||++.+. ..+++.|..+++.
T Consensus 92 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~------------ 149 (195)
T 1jbk_A 92 GAK----------YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR------------ 149 (195)
T ss_dssp TTC----------SHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT------------
T ss_pred cCC----------ccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc------------
Confidence 100 1111111 1222222 33456799999999986 3457788887765
Q ss_pred cCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHH
Q psy2887 529 FRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIA 594 (899)
Q Consensus 529 ~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~ 594 (899)
.+..+|+++|.... .. ...+++.+.+||+ .+.|.+++.+++.+|+
T Consensus 150 -~~~~~i~~~~~~~~--~~-----------------~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 150 -GELHCVGATTLDEY--RQ-----------------YIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp -TSCCEEEEECHHHH--HH-----------------HTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred -CCeEEEEeCCHHHH--HH-----------------HHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 35668888884221 00 1135788999995 7999999999988764
No 150
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.38 E-value=1.9e-12 Score=134.11 Aligned_cols=171 Identities=11% Similarity=0.073 Sum_probs=114.6
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEE
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFI 91 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~i 91 (899)
...+++|+||||||||++|+++++.+... +..++.+++..+.... ...+..+ ..+.+|+|
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~-------~~~~~~~~~~~~~~~~----------~~~~~~~---~~~~vlii 110 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL-------ERRSFYIPLGIHASIS----------TALLEGL---EQFDLICI 110 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEEGGGGGGSC----------GGGGTTG---GGSSEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEEHHHHHHHH----------HHHHHhc---cCCCEEEE
Confidence 46789999999999999999999988543 4567777776654211 1111111 33669999
Q ss_pred ccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhcc---ccccccCCCHHHHHHHHHhhh
Q psy2887 92 DELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRF---QKILVEEPDIEETISILRGLQ 168 (899)
Q Consensus 92 DEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf---~~i~l~~p~~~e~~~il~~~~ 168 (899)
||++.+.... .........+....+.+.+.+|++|+... ......++++.+|| ..+.+++|+.+++.++++..+
T Consensus 111 De~~~~~~~~--~~~~~l~~~l~~~~~~~~~~ii~~~~~~~-~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~ 187 (242)
T 3bos_A 111 DDVDAVAGHP--LWEEAIFDLYNRVAEQKRGSLIVSASASP-MEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRA 187 (242)
T ss_dssp ETGGGGTTCH--HHHHHHHHHHHHHHHHCSCEEEEEESSCT-TTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHH
T ss_pred eccccccCCH--HHHHHHHHHHHHHHHcCCCeEEEEcCCCH-HHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHH
Confidence 9999986421 00112233333334455553444444322 01123468999999 569999999999999999887
Q ss_pred hhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhh
Q psy2887 169 KKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 215 (899)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~ 215 (899)
.. .++.++++++..+++.+.+.+. .+..+++.+...+
T Consensus 188 ~~----~~~~~~~~~~~~l~~~~~g~~r------~l~~~l~~~~~~a 224 (242)
T 3bos_A 188 AM----RGLQLPEDVGRFLLNRMARDLR------TLFDVLDRLDKAS 224 (242)
T ss_dssp HH----TTCCCCHHHHHHHHHHTTTCHH------HHHHHHHHHHHHH
T ss_pred HH----cCCCCCHHHHHHHHHHccCCHH------HHHHHHHHHHHHH
Confidence 64 4678999999999988866443 6777777666554
No 151
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.37 E-value=2.9e-12 Score=139.16 Aligned_cols=164 Identities=19% Similarity=0.247 Sum_probs=120.9
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHh------cCCC
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN------NQKD 86 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~------~~~~ 86 (899)
.++++|+||||+|||++|+++++.+.... ....++.+++... .+ ...+++++..+.. .+.+
T Consensus 42 ~~~~ll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~~------~~--~~~i~~~~~~~~~~~~~~~~~~~ 108 (323)
T 1sxj_B 42 MPHMIISGMPGIGKTTSVHCLAHELLGRS-----YADGVLELNASDD------RG--IDVVRNQIKHFAQKKLHLPPGKH 108 (323)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHHGGG-----HHHHEEEECTTSC------CS--HHHHHTHHHHHHHBCCCCCTTCC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhcCCc-----ccCCEEEecCccc------cC--hHHHHHHHHHHHhccccCCCCCc
Confidence 34699999999999999999999873211 0233555554321 12 2345556655541 2237
Q ss_pred EEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHHHHHHHH
Q psy2887 87 IIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISIL 164 (899)
Q Consensus 87 ~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~il 164 (899)
.|++|||+|.+.. ...+.|...++. ..+.+|++|+... .+.+++.+||..+.|++|+.++..+++
T Consensus 109 ~viiiDe~~~l~~--------~~~~~L~~~le~~~~~~~~il~~~~~~-----~l~~~l~sr~~~i~~~~~~~~~~~~~l 175 (323)
T 1sxj_B 109 KIVILDEADSMTA--------GAQQALRRTMELYSNSTRFAFACNQSN-----KIIEPLQSQCAILRYSKLSDEDVLKRL 175 (323)
T ss_dssp EEEEEESGGGSCH--------HHHHTTHHHHHHTTTTEEEEEEESCGG-----GSCHHHHTTSEEEECCCCCHHHHHHHH
T ss_pred eEEEEECcccCCH--------HHHHHHHHHHhccCCCceEEEEeCChh-----hchhHHHhhceEEeecCCCHHHHHHHH
Confidence 8999999999854 456677888764 5688888888876 789999999999999999999999999
Q ss_pred HhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHH
Q psy2887 165 RGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAA 212 (899)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~ 212 (899)
+..+.. .++.++++++..+++.+.+... .+..+++.++
T Consensus 176 ~~~~~~----~~~~~~~~~~~~l~~~~~G~~r------~a~~~l~~~~ 213 (323)
T 1sxj_B 176 LQIIKL----EDVKYTNDGLEAIIFTAEGDMR------QAINNLQSTV 213 (323)
T ss_dssp HHHHHH----HTCCBCHHHHHHHHHHHTTCHH------HHHHHHHHHH
T ss_pred HHHHHH----cCCCCCHHHHHHHHHHcCCCHH------HHHHHHHHHH
Confidence 887765 4667899999999999876543 6777776655
No 152
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.34 E-value=5.9e-12 Score=137.03 Aligned_cols=167 Identities=17% Similarity=0.199 Sum_probs=118.5
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCc--------------cCCCeEEEEehhhhhcCcccCchHHHHHHHHH
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNS--------------LLSKKILLLDIALLLAGTKYRGEFEDRLKKIL 77 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~--------------l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~ 77 (899)
.+..+||+||||+|||++|+++|+.+........ .....++.++... +++..+ ...+++++
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~---~~~~~~--i~~ir~l~ 97 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK---GKNTLG--VDAVREVT 97 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCT---TCSSBC--HHHHHHHH
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccc---cCCCCC--HHHHHHHH
Confidence 3445899999999999999999999854321100 0012344443321 011112 23467777
Q ss_pred HHHHhc---CCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC--ceEEEEecChhHHHHhhhcCHHHHhccccccc
Q psy2887 78 KEISNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG--ELHCIGATTLNEYRQYIEKDAAFERRFQKILV 152 (899)
Q Consensus 78 ~~~~~~---~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~--~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l 152 (899)
+.+... ++..|++|||+|.|.. ++.|.|+..++.. .+++|++|+.++ .+.+++++|+..+.|
T Consensus 98 ~~~~~~~~~~~~kvviIdead~l~~--------~a~naLLk~lEep~~~~~~Il~t~~~~-----~l~~ti~SRc~~~~~ 164 (334)
T 1a5t_A 98 EKLNEHARLGGAKVVWVTDAALLTD--------AAANALLKTLEEPPAETWFFLATREPE-----RLLATLRSRCRLHYL 164 (334)
T ss_dssp HHTTSCCTTSSCEEEEESCGGGBCH--------HHHHHHHHHHTSCCTTEEEEEEESCGG-----GSCHHHHTTSEEEEC
T ss_pred HHHhhccccCCcEEEEECchhhcCH--------HHHHHHHHHhcCCCCCeEEEEEeCChH-----hCcHHHhhcceeeeC
Confidence 776522 3468999999999964 5678899999864 588888888877 889999999999999
Q ss_pred cCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHH
Q psy2887 153 EEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEA 211 (899)
Q Consensus 153 ~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a 211 (899)
++|+.++..++++... .++++++..++.++++... ++..+++..
T Consensus 165 ~~~~~~~~~~~L~~~~---------~~~~~~~~~l~~~s~G~~r------~a~~~l~~~ 208 (334)
T 1a5t_A 165 APPPEQYAVTWLSREV---------TMSQDALLAALRLSAGSPG------AALALFQGD 208 (334)
T ss_dssp CCCCHHHHHHHHHHHC---------CCCHHHHHHHHHHTTTCHH------HHHHTTSSH
T ss_pred CCCCHHHHHHHHHHhc---------CCCHHHHHHHHHHcCCCHH------HHHHHhccc
Confidence 9999999999887543 4788999999998877544 666655543
No 153
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.33 E-value=8.5e-12 Score=137.43 Aligned_cols=174 Identities=16% Similarity=0.180 Sum_probs=118.5
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCC-ccC------------------CCeEEEEehhhhhcCcccCchHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPN-SLL------------------SKKILLLDIALLLAGTKYRGEFEDRL 73 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~-~l~------------------~~~~~~~~~~~l~~~~~~~g~~~~~l 73 (899)
.+|++|+||||+||||+++++|+.+....... .+. ...++.++... ........+
T Consensus 36 ~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 109 (354)
T 1sxj_E 36 LPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD------MGNNDRIVI 109 (354)
T ss_dssp CCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----------CCHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhh------cCCcchHHH
Confidence 34599999999999999999999763321100 000 01122222111 000001124
Q ss_pred HHHHHHHHh-------------cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhh
Q psy2887 74 KKILKEISN-------------NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIE 138 (899)
Q Consensus 74 ~~~~~~~~~-------------~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ 138 (899)
++.++.+.. ...+.|++|||++.|.. ...+.|...++. ....+|.+|+... .
T Consensus 110 ~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~--------~~~~~L~~~le~~~~~~~~Il~t~~~~-----~ 176 (354)
T 1sxj_E 110 QELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK--------DAQAALRRTMEKYSKNIRLIMVCDSMS-----P 176 (354)
T ss_dssp HHHHHHHTTTTC------------CCEEEEEECTTSSCH--------HHHHHHHHHHHHSTTTEEEEEEESCSC-----S
T ss_pred HHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH--------HHHHHHHHHHHhhcCCCEEEEEeCCHH-----H
Confidence 455554431 22577999999999643 455667777753 4578888888877 7
Q ss_pred cCHHHHhccccccccCCCHHHHHHHHHhhhhhhhcccCCCCC-HHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhh
Q psy2887 139 KDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEIT-DPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 215 (899)
Q Consensus 139 ld~al~~Rf~~i~l~~p~~~e~~~il~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~ 215 (899)
+.+++.+||..+.|++|+.++..++++.+++. .++.++ ++++..+++.+.+.+. +++.+++.+....
T Consensus 177 l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~l~~i~~~~~G~~r------~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 177 IIAPIKSQCLLIRCPAPSDSEISTILSDVVTN----ERIQLETKDILKRIAQASNGNLR------VSLLMLESMALNN 244 (354)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----HTCEECCSHHHHHHHHHHTTCHH------HHHHHHTHHHHTT
T ss_pred HHHHHHhhceEEecCCcCHHHHHHHHHHHHHH----cCCCCCcHHHHHHHHHHcCCCHH------HHHHHHHHHHHhC
Confidence 88999999988999999999999999988765 467788 9999999999877655 8888888776544
No 154
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.33 E-value=4.4e-10 Score=148.87 Aligned_cols=121 Identities=13% Similarity=0.193 Sum_probs=89.1
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEEccc
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDEL 94 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi 94 (899)
+..+.||+|||||++++.+|+.+ +..++.++|+.-. ....+..+|.-+.+. ++..++||+
T Consensus 606 gg~~~GPaGtGKTet~k~La~~l----------gr~~~vfnC~~~~--------d~~~~g~i~~G~~~~--GaW~cfDEf 665 (3245)
T 3vkg_A 606 GGNPFGPAGTGKTETVKALGSQL----------GRFVLVFCCDEGF--------DLQAMSRIFVGLCQC--GAWGCFDEF 665 (3245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT----------TCCEEEEECSSCC--------CHHHHHHHHHHHHHH--TCEEEEETT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHh----------CCeEEEEeCCCCC--------CHHHHHHHHhhHhhc--CcEEEehhh
Confidence 45789999999999999999999 8899988885432 112466677766644 568999999
Q ss_pred cccccCCCCCchhhHHHhhhhhh----------------c-------CCceEEEEecChhHHHHhhhcCHHHHhcccccc
Q psy2887 95 HTMIGTGKVEGSIDAGNMLKPEL----------------S-------RGELHCIGATTLNEYRQYIEKDAAFERRFQKIL 151 (899)
Q Consensus 95 ~~l~~~~~~~~~~~~~~~l~~~l----------------~-------~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~ 151 (899)
+++-. ++..++.+.+ + .....+++|+|+ +|....+++++|++||-.|.
T Consensus 666 Nrl~~--------~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNp-gY~gr~eLP~nLk~lFr~v~ 736 (3245)
T 3vkg_A 666 NRLEE--------RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNP-GYAGRSNLPDNLKKLFRSMA 736 (3245)
T ss_dssp TSSCH--------HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCC-CGGGCCCSCHHHHTTEEEEE
T ss_pred hcCCH--------HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCC-CccCcccChHHHHhhcEEEE
Confidence 99854 2222222211 1 123456667665 78778899999999998899
Q ss_pred ccCCCHHHHHHHH
Q psy2887 152 VEEPDIEETISIL 164 (899)
Q Consensus 152 l~~p~~~e~~~il 164 (899)
+..|+.+...+|+
T Consensus 737 m~~Pd~~~i~ei~ 749 (3245)
T 3vkg_A 737 MIKPDREMIAQVM 749 (3245)
T ss_dssp CCSCCHHHHHHHH
T ss_pred EeCCCHHHHHHHH
Confidence 9999998888775
No 155
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.32 E-value=8.3e-12 Score=139.18 Aligned_cols=195 Identities=15% Similarity=0.174 Sum_probs=128.6
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccC---CCceEEecccccccccch-
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN---EESIIRIDMSEFIEKHSI- 463 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~---~~~~~~~~~~~~~~~~~~- 463 (899)
..++|++..++.+...+.....+ .+..+++|+||||||||++++++++.+... +.+++.++|.........
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~-----~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYRE-----EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGT-----CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC-----CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHH
Confidence 56889999999998887654322 111269999999999999999999988443 567888887654332111
Q ss_pred ---hhccCCCCCccccccc---chhhHHHHhCC-CEEEEEccccccC----HHHHHHHHHhhcCCceecCCCceEecCCe
Q psy2887 464 ---SRLIGAPPGYIGYEEG---GYLTEIVRRKP-YSLILLDEIEKAN----SDVFNILLQILDDGRLTDNRGRTINFRNT 532 (899)
Q Consensus 464 ---~~l~g~~~~~~g~~~~---~~l~~~~~~~~-~~vl~lDEid~~~----~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ 532 (899)
...+|......|.... ..+...+.... +.||||||++.+. ...+..|+..++.. ...++
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~----------~~~~~ 164 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV----------NKSKI 164 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC----------CC--E
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc----------CCCeE
Confidence 1112222222222111 23344444443 6899999999875 56777888877642 12466
Q ss_pred EEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccC-eEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcc
Q psy2887 533 IIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRID-DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 611 (899)
Q Consensus 533 ~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~-~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~ 611 (899)
.+|++||.... ...+.+.+.+||. ..+.|+|++.+++.+++...+.. ....
T Consensus 165 ~~I~~~~~~~~---------------------~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~-------~~~~ 216 (386)
T 2qby_A 165 SFIGITNDVKF---------------------VDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQM-------AFKP 216 (386)
T ss_dssp EEEEEESCGGG---------------------GGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHH-------HBCS
T ss_pred EEEEEECCCCh---------------------HhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHh-------hccC
Confidence 78888885321 2235667888986 48999999999999998876632 1113
Q ss_pred eeecHHHHHHHHhc
Q psy2887 612 LKISKAALKKISNI 625 (899)
Q Consensus 612 ~~~~~~~~~~L~~~ 625 (899)
..+++++.+++...
T Consensus 217 ~~~~~~~~~~l~~~ 230 (386)
T 2qby_A 217 GVLPDNVIKLCAAL 230 (386)
T ss_dssp SCSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 56889999998873
No 156
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.32 E-value=1.6e-11 Score=134.17 Aligned_cols=163 Identities=19% Similarity=0.266 Sum_probs=117.9
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhc-----CCCEE
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNN-----QKDII 88 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~-----~~~~i 88 (899)
+|++|+|||||||||+++++|+.+.... ....+..++.+. ..| ...+++.+...... .++.|
T Consensus 47 ~~~ll~Gp~G~GKTtla~~la~~l~~~~-----~~~~~~~~~~~~------~~~--~~~ir~~i~~~~~~~~~~~~~~~v 113 (340)
T 1sxj_C 47 PHLLFYGPPGTGKTSTIVALAREIYGKN-----YSNMVLELNASD------DRG--IDVVRNQIKDFASTRQIFSKGFKL 113 (340)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHTTS-----HHHHEEEECTTS------CCS--HHHHHTHHHHHHHBCCSSSCSCEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHcCCC-----ccceEEEEcCcc------ccc--HHHHHHHHHHHHhhcccCCCCceE
Confidence 4699999999999999999999874321 012344444322 112 12344545444321 23679
Q ss_pred EEEccccccccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHHHHHHHHHh
Q psy2887 89 IFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRG 166 (899)
Q Consensus 89 L~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~il~~ 166 (899)
++|||+|.+.. +..+.|+..++. ....+|++||... .+.+++.+||..+.|.+++.++..+++..
T Consensus 114 iiiDe~~~l~~--------~~~~~L~~~le~~~~~~~~il~~n~~~-----~i~~~i~sR~~~~~~~~l~~~~~~~~l~~ 180 (340)
T 1sxj_C 114 IILDEADAMTN--------AAQNALRRVIERYTKNTRFCVLANYAH-----KLTPALLSQCTRFRFQPLPQEAIERRIAN 180 (340)
T ss_dssp EEETTGGGSCH--------HHHHHHHHHHHHTTTTEEEEEEESCGG-----GSCHHHHTTSEEEECCCCCHHHHHHHHHH
T ss_pred EEEeCCCCCCH--------HHHHHHHHHHhcCCCCeEEEEEecCcc-----ccchhHHhhceeEeccCCCHHHHHHHHHH
Confidence 99999999854 456678888864 4577888888876 78999999999999999999999999988
Q ss_pred hhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHH
Q psy2887 167 LQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAA 212 (899)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~ 212 (899)
+++. .++.++++++..++.++.+... +++.+++.++
T Consensus 181 ~~~~----~~~~i~~~~~~~i~~~s~G~~r------~~~~~l~~~~ 216 (340)
T 1sxj_C 181 VLVH----EKLKLSPNAEKALIELSNGDMR------RVLNVLQSCK 216 (340)
T ss_dssp HHHT----TTCCBCHHHHHHHHHHHTTCHH------HHHHHTTTTT
T ss_pred HHHH----cCCCCCHHHHHHHHHHcCCCHH------HHHHHHHHHH
Confidence 7754 4678999999999999877544 6666665443
No 157
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.32 E-value=5.8e-12 Score=152.73 Aligned_cols=158 Identities=17% Similarity=0.263 Sum_probs=111.4
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEE
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFI 91 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~i 91 (899)
+.+++||+||||||||++|+++|+.+... +.+++.++++.+..... .. ...+. ..+. ...++||||
T Consensus 520 p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~-------~~~~i~i~~s~~~~~~~--~~-~~~l~---~~~~-~~~~~vl~l 585 (758)
T 3pxi_A 520 PIGSFIFLGPTGVGKTELARALAESIFGD-------EESMIRIDMSEYMEKHS--TS-GGQLT---EKVR-RKPYSVVLL 585 (758)
T ss_dssp CSEEEEEESCTTSSHHHHHHHHHHHHHSC-------TTCEEEEEGGGGCSSCC--CC----CH---HHHH-HCSSSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcCC-------CcceEEEechhcccccc--cc-cchhh---HHHH-hCCCeEEEE
Confidence 33479999999999999999999988443 56789999988763322 11 11111 2222 234679999
Q ss_pred ccccccccCCCCCchhhHHHhhhhhhcCC-------------ceEEEEecChhH-----HHH--hhhcCHHHHhccc-cc
Q psy2887 92 DELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCIGATTLNE-----YRQ--YIEKDAAFERRFQ-KI 150 (899)
Q Consensus 92 DEi~~l~~~~~~~~~~~~~~~l~~~l~~~-------------~v~vI~at~~~~-----~~~--~~~ld~al~~Rf~-~i 150 (899)
||++.+.+ ++.+.|++.|+.+ ++++|+|||.+. ... .-.+.|+|.+||+ .|
T Consensus 586 DEi~~~~~--------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i 657 (758)
T 3pxi_A 586 DAIEKAHP--------DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEII 657 (758)
T ss_dssp ECGGGSCH--------HHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEE
T ss_pred eCccccCH--------HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEE
Confidence 99998843 6778888888653 468999999422 110 1136899999996 59
Q ss_pred cccCCCHHHHHHHHHhhhhhhhc-----ccCCCCCHHHHHHHHhhh
Q psy2887 151 LVEEPDIEETISILRGLQKKYEV-----HHGVEITDPAIVAASELS 191 (899)
Q Consensus 151 ~l~~p~~~e~~~il~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 191 (899)
.|++|+.+++..|++.++..+.. ...+.+++++++.+++.+
T Consensus 658 ~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~ 703 (758)
T 3pxi_A 658 VFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEG 703 (758)
T ss_dssp ECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGG
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhC
Confidence 99999999999999887766432 234578999999998764
No 158
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.32 E-value=5.7e-12 Score=132.64 Aligned_cols=159 Identities=16% Similarity=0.097 Sum_probs=100.3
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhc--------Cc---ccCchHHHHHHHHHHHH
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA--------GT---KYRGEFEDRLKKILKEI 80 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~--------~~---~~~g~~~~~l~~~~~~~ 80 (899)
...++||+||||||||++|+++++.+... +.+++.++++.+.. |. .+.|... .....+..+
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~~-------~~~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~-~~~~~l~~a 99 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSRW-------QGPFISLNCAALNENLLDSELFGHEAGAFTGAQK-RHPGRFERA 99 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTTT-------TSCEEEEEGGGSCHHHHHHHHHCCC----------CCCCHHHHT
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCcc-------CCCeEEEecCCCChhHHHHHhcCCcccccccccc-cccchhhhc
Confidence 45789999999999999999999876322 45788888875421 00 0001000 001122222
Q ss_pred HhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC-------------CceEEEEecChhHHH--HhhhcCHHHHh
Q psy2887 81 SNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-------------GELHCIGATTLNEYR--QYIEKDAAFER 145 (899)
Q Consensus 81 ~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~-------------~~v~vI~at~~~~~~--~~~~ld~al~~ 145 (899)
.+++|||||++.+.. +..+.|...++. ..+.+|++||..... ..-.+.++|.+
T Consensus 100 ----~~~~l~lDEi~~l~~--------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~ 167 (265)
T 2bjv_A 100 ----DGGTLFLDELATAPM--------MVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD 167 (265)
T ss_dssp ----TTSEEEEESGGGSCH--------HHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHH
T ss_pred ----CCcEEEEechHhcCH--------HHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHH
Confidence 256999999999864 445566666653 357899999985321 12246799999
Q ss_pred cccc--ccccCCCH--HHHHHHHHhhhhhhhcccCC----CCCHHHHHHHHhh
Q psy2887 146 RFQK--ILVEEPDI--EETISILRGLQKKYEVHHGV----EITDPAIVAASEL 190 (899)
Q Consensus 146 Rf~~--i~l~~p~~--~e~~~il~~~~~~~~~~~~~----~~~~~~~~~~~~~ 190 (899)
||.. +.+++++. ++...+++.+++.+....+. .++++++..+...
T Consensus 168 Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~ 220 (265)
T 2bjv_A 168 ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNY 220 (265)
T ss_dssp HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHS
T ss_pred hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhC
Confidence 9975 45555543 55666666666654443333 6889998887654
No 159
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.32 E-value=3.5e-12 Score=136.49 Aligned_cols=161 Identities=14% Similarity=0.149 Sum_probs=104.2
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhc--------C---cccCchHHHHHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA--------G---TKYRGEFEDRLKKILKE 79 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~--------~---~~~~g~~~~~l~~~~~~ 79 (899)
....++||+||||||||++|++++...... +.+++.++++.+.. | +.+.|... .....|..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~-------~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~-~~~g~~~~ 94 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSARS-------DRPLVTLNCAALNESLLESELFGHEKGAFTGADK-RREGRFVE 94 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSCS-------SSCCCEEECSSCCHHHHHHHHTCCCSSCCC---C-CCCCHHHH
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCccc-------CCCeEEEeCCCCChHHHHHHhcCccccccCchhh-hhcCHHHh
Confidence 356789999999999999999999876332 45677777754421 1 01111111 11223444
Q ss_pred HHhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC-------------ceEEEEecChhHHH--HhhhcCHHHH
Q psy2887 80 ISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCIGATTLNEYR--QYIEKDAAFE 144 (899)
Q Consensus 80 ~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~-------------~v~vI~at~~~~~~--~~~~ld~al~ 144 (899)
+. +++|||||++.+.. +....|+..++.+ .+.+|++||..... ..-.+.+.|.
T Consensus 95 a~----~g~L~LDEi~~l~~--------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~ 162 (304)
T 1ojl_A 95 AD----GGTLFLDEIGDISP--------LMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLY 162 (304)
T ss_dssp HT----TSEEEEESCTTCCH--------HHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHH
T ss_pred cC----CCEEEEeccccCCH--------HHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHH
Confidence 42 45999999999964 4555677777543 48899999986321 1123678999
Q ss_pred hcccccc--ccCCC--HHHHHHHHHhhhhhhhccc---CCCCCHHHHHHHHhhh
Q psy2887 145 RRFQKIL--VEEPD--IEETISILRGLQKKYEVHH---GVEITDPAIVAASELS 191 (899)
Q Consensus 145 ~Rf~~i~--l~~p~--~~e~~~il~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 191 (899)
+||..+. +|++. .++...+++.+++.+.... ...++++++..+...+
T Consensus 163 ~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~ 216 (304)
T 1ojl_A 163 YRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYD 216 (304)
T ss_dssp HHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCC
T ss_pred hhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCC
Confidence 9997644 55554 4566667777776654333 3578999998887664
No 160
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.31 E-value=7.9e-12 Score=153.20 Aligned_cols=179 Identities=21% Similarity=0.292 Sum_probs=114.0
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhcc-------CCCceEEecccccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFN-------NEESIIRIDMSEFIEK 460 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~-------~~~~~~~~~~~~~~~~ 460 (899)
..++|++..+..+...+.+.. ..+++|+||||||||++|+++|+.+.. .+.+++.++++.+...
T Consensus 170 d~viGr~~~i~~l~~~l~~~~---------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g 240 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT---------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAG 240 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS---------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------
T ss_pred cccCCcHHHHHHHHHHHhcCC---------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhcc
Confidence 568999999999988875422 125899999999999999999999843 3567888888776431
Q ss_pred cchhhccCCCCCccccccc--chhhHHHHhC-CCEEEEEccccccC--------HHHHHHHHHhhcCCceecCCCceEec
Q psy2887 461 HSISRLIGAPPGYIGYEEG--GYLTEIVRRK-PYSLILLDEIEKAN--------SDVFNILLQILDDGRLTDNRGRTINF 529 (899)
Q Consensus 461 ~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~-~~~vl~lDEid~~~--------~~~~~~Ll~~le~g~~~~~~g~~~~~ 529 (899)
. .+.|..+. ..++..+... .+.||||||++.+. ..+.+.|..+++.+
T Consensus 241 ~----------~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~------------ 298 (854)
T 1qvr_A 241 A----------KYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG------------ 298 (854)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTT------------
T ss_pred C----------ccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC------------
Confidence 1 13332222 2334444443 56899999999987 56778888888763
Q ss_pred CCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcC
Q psy2887 530 RNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMN 609 (899)
Q Consensus 530 ~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~ 609 (899)
+..+|++||.+... .-...+.|.+||+ .|.|++|+.++..+|++..+..+.. .++
T Consensus 299 -~i~~I~at~~~~~~--------------------~~~~d~aL~rRf~-~i~l~~p~~~e~~~iL~~~~~~~~~---~~~ 353 (854)
T 1qvr_A 299 -ELRLIGATTLDEYR--------------------EIEKDPALERRFQ-PVYVDEPTVEETISILRGLKEKYEV---HHG 353 (854)
T ss_dssp -CCCEEEEECHHHHH--------------------HHTTCTTTCSCCC-CEEECCCCHHHHHHHHHHHHHHHHH---HTT
T ss_pred -CeEEEEecCchHHh--------------------hhccCHHHHhCCc-eEEeCCCCHHHHHHHHHhhhhhhhh---hcC
Confidence 45578888743210 1124788999996 5999999999999999877755432 223
Q ss_pred cceeecHHHHHHHHh
Q psy2887 610 MDLKISKAALKKISN 624 (899)
Q Consensus 610 ~~~~~~~~~~~~L~~ 624 (899)
+.++++++..++.
T Consensus 354 --~~i~~~al~~~~~ 366 (854)
T 1qvr_A 354 --VRISDSAIIAAAT 366 (854)
T ss_dssp --CEECHHHHHHHHH
T ss_pred --CCCCHHHHHHHHH
Confidence 6678888887765
No 161
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.31 E-value=1.1e-11 Score=150.45 Aligned_cols=160 Identities=16% Similarity=0.201 Sum_probs=114.9
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcC---c-------ccCchHHHHHHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG---T-------KYRGEFEDRLKKILKEI 80 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~---~-------~~~g~~~~~l~~~~~~~ 80 (899)
+...++||+||||||||++|+++|+.+ +.+++.++++.+... + .|+|..+ -..+...+
T Consensus 486 ~p~~~~ll~G~~GtGKT~la~~la~~l----------~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~--~~~l~~~~ 553 (758)
T 1r6b_X 486 KPVGSFLFAGPTGVGKTEVTVQLSKAL----------GIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQ--GGLLTDAV 553 (758)
T ss_dssp SCSEEEEEECSTTSSHHHHHHHHHHHH----------TCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHH--TTHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHHh----------cCCEEEEechhhcchhhHhhhcCCCCCCcCccc--cchHHHHH
Confidence 444589999999999999999999998 778999998876432 1 1333222 11222233
Q ss_pred HhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC-------------ceEEEEecChhHHH-------------
Q psy2887 81 SNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCIGATTLNEYR------------- 134 (899)
Q Consensus 81 ~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~-------------~v~vI~at~~~~~~------------- 134 (899)
. ...++||||||++.+.+ ++.+.|++.|+.+ ++++|+|||.....
T Consensus 554 ~-~~~~~vl~lDEi~~~~~--------~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~ 624 (758)
T 1r6b_X 554 I-KHPHAVLLLDEIEKAHP--------DVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDN 624 (758)
T ss_dssp H-HCSSEEEEEETGGGSCH--------HHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC--------------
T ss_pred H-hCCCcEEEEeCccccCH--------HHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccch
Confidence 3 23478999999998753 6888899998754 46699999873200
Q ss_pred -------HhhhcCHHHHhccc-cccccCCCHHHHHHHHHhhhhhhhc-----ccCCCCCHHHHHHHHhhh
Q psy2887 135 -------QYIEKDAAFERRFQ-KILVEEPDIEETISILRGLQKKYEV-----HHGVEITDPAIVAASELS 191 (899)
Q Consensus 135 -------~~~~ld~al~~Rf~-~i~l~~p~~~e~~~il~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 191 (899)
-.-.++|+|++||+ .|.|++|+.+++..|++.++.++.. ...+.+++++++.+++.+
T Consensus 625 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~ 694 (758)
T 1r6b_X 625 STDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKG 694 (758)
T ss_dssp ---CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhC
Confidence 00156899999996 4899999999999999888765432 113578999999888764
No 162
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural genomics, MCSG, Zn binding, hydrolase; 1.95A {Sphaerobacter thermophilus} SCOP: d.159.1.0
Probab=99.31 E-value=1.6e-12 Score=135.13 Aligned_cols=116 Identities=16% Similarity=0.203 Sum_probs=90.1
Q ss_pred cccccccccHHHHHHHHHHhhccCCccceeeccccCCCCceEehhHHHHHhcCCccEEEccCChHhHHhHhhhcccCchh
Q psy2887 631 YGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVLININKKSKL 710 (899)
Q Consensus 631 ~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~~~~l~~~~~~~~~v~GNHe~~~l~~~~~~~~~~~~ 710 (899)
..++|+|+++.+++++++.+. ..|.++++||++++|+.+.+++++++++.. +.+|+||||.++.............
T Consensus 7 ~~isDiHg~~~~l~~~l~~~~---~~d~ii~~GDl~~~g~~~~~~~~~l~~~~~-~~~v~GNhD~~~~~~~~~~~~~~~~ 82 (246)
T 3rqz_A 7 LIISDVHANLVALEAVLSDAG---RVDDIWSLGDIVGYGPRPRECVELVRVLAP-NISVIGNHDWACIGRLSLDEFNPVA 82 (246)
T ss_dssp EEECCCTTCHHHHHHHHHHHC---SCSEEEECSCCSSSSSCHHHHHHHHHHHCS-SEECCCHHHHHHTCCCCCC--CGGG
T ss_pred EEEeecCCCHHHHHHHHHhcc---CCCEEEECCCcCCCCCCHHHHHHHHHhcCC-CEEEeCchHHHHhccCCccccCHHH
Confidence 568999999999999998876 568999999999999999999999988863 6899999999887644332211112
Q ss_pred chHHHhhCCcChHHHHHHHhcCCceEEeCCEEEEeccccc
Q psy2887 711 DTFDDILDAPDKKKLVSWLRTQPLAIYYKKYLMIHAGVAK 750 (899)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~l~~lp~~~~~~~~~~vHAg~~~ 750 (899)
.....+......++..+||+++|..+..++++++||+...
T Consensus 83 ~~~~~~~~~~l~~~~~~~L~~lp~~~~~~~i~~~Hg~p~~ 122 (246)
T 3rqz_A 83 RFASYWTTMQLQAEHLQYLESLPNRMIDGDWTVVHGSPRH 122 (246)
T ss_dssp GCHHHHHHHHCCHHHHHHHHHCCSEEEETTEEEESSCSSS
T ss_pred HHHHHHHHHHcCHHHHHHHHhCCcEEEECCEEEEECCcCC
Confidence 2222333333456789999999999998999999998654
No 163
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.31 E-value=3.5e-11 Score=134.10 Aligned_cols=190 Identities=17% Similarity=0.115 Sum_probs=123.6
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCC-CCccCCCeEEEEehhhhh-c-------------Cc--ccCch-HHHHH
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEV-PNSLLSKKILLLDIALLL-A-------------GT--KYRGE-FEDRL 73 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~-p~~l~~~~~~~~~~~~l~-~-------------~~--~~~g~-~~~~l 73 (899)
.+.+++|+||||||||++|+++++.+..... .....+..++.+++.... . +. ...|. ....+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 123 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYI 123 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHH
Confidence 3568999999999999999999998743200 000014577888765432 0 00 01111 12223
Q ss_pred HHHHHHHHhcCCCEEEEEccccccccCCCCCchhhH-HHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhccc-ccc
Q psy2887 74 KKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDA-GNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQ-KIL 151 (899)
Q Consensus 74 ~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~-~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~-~i~ 151 (899)
..++..+. .. +.||||||+|.+.... ..+. ...|.... ..+.+|++||..++. ..+++++.+||. .+.
T Consensus 124 ~~l~~~l~-~~-~~vlilDEi~~l~~~~----~~~~~l~~l~~~~--~~~~iI~~t~~~~~~--~~l~~~l~sr~~~~i~ 193 (384)
T 2qby_B 124 DKIKNGTR-NI-RAIIYLDEVDTLVKRR----GGDIVLYQLLRSD--ANISVIMISNDINVR--DYMEPRVLSSLGPSVI 193 (384)
T ss_dssp HHHHHHHS-SS-CEEEEEETTHHHHHST----TSHHHHHHHHTSS--SCEEEEEECSSTTTT--TTSCHHHHHTCCCEEE
T ss_pred HHHHHHhc-cC-CCEEEEECHHHhccCC----CCceeHHHHhcCC--cceEEEEEECCCchH--hhhCHHHHhcCCCeEE
Confidence 44444443 22 3399999999997532 1233 33444333 678999999987421 267999999986 599
Q ss_pred ccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhh
Q psy2887 152 VEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIK 216 (899)
Q Consensus 152 l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~ 216 (899)
|++|+.++..++++..+.. ...+..++++++..+++.+.+.. +-+..+++++..+...+.
T Consensus 194 l~~l~~~~~~~il~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~---G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 194 FKPYDAEQLKFILSKYAEY--GLIKGTYDDEILSYIAAISAKEH---GDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp ECCCCHHHHHHHHHHHHHH--TSCTTSCCSHHHHHHHHHHHTTC---CCHHHHHHHHHHHHHHTT
T ss_pred ECCCCHHHHHHHHHHHHHh--hcccCCcCHHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHHhc
Confidence 9999999999999887753 11245788999999999987321 234578888888876554
No 164
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.31 E-value=2.5e-12 Score=127.38 Aligned_cols=148 Identities=22% Similarity=0.288 Sum_probs=99.3
Q ss_pred hccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhcc-------CCCceEEeccccccc
Q psy2887 387 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFN-------NEESIIRIDMSEFIE 459 (899)
Q Consensus 387 ~~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~-------~~~~~~~~~~~~~~~ 459 (899)
...++|++..++.+...+... ...+++|+||||||||++|+++++.+.. .+.+++.+++..+..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~---------~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRR---------TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIA 91 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS---------SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCC---------CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhc
Confidence 367889999999888877531 1236999999999999999999999854 256677777655432
Q ss_pred ccchhhccCCCCCcccccc--cchhhHHHHhC-CCEEEEEccccccC---------HHHHHHHHHhhcCCceecCCCceE
Q psy2887 460 KHSISRLIGAPPGYIGYEE--GGYLTEIVRRK-PYSLILLDEIEKAN---------SDVFNILLQILDDGRLTDNRGRTI 527 (899)
Q Consensus 460 ~~~~~~l~g~~~~~~g~~~--~~~l~~~~~~~-~~~vl~lDEid~~~---------~~~~~~Ll~~le~g~~~~~~g~~~ 527 (899)
... +.|... ...+...+... .+.||||||++.+. ..+++.|...+++
T Consensus 92 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~----------- 150 (187)
T 2p65_A 92 GAK----------YRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR----------- 150 (187)
T ss_dssp HCC----------SHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT-----------
T ss_pred CCC----------chhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc-----------
Confidence 110 111111 12233333333 56799999999987 5677888888875
Q ss_pred ecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCC
Q psy2887 528 NFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLN 586 (899)
Q Consensus 528 ~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~ 586 (899)
.++++|+++|..... . ...+++.|.+||+ .+.+++++
T Consensus 151 --~~~~ii~~~~~~~~~--~-----------------~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 151 --GELRCIGATTVSEYR--Q-----------------FIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp --TCSCEEEEECHHHHH--H-----------------HTTTCHHHHHHEE-EEECCSCC
T ss_pred --CCeeEEEecCHHHHH--H-----------------HHhccHHHHHhcC-cccCCCCC
Confidence 456788888843210 0 1135788999995 68888774
No 165
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A*
Probab=99.30 E-value=7.5e-12 Score=131.30 Aligned_cols=116 Identities=21% Similarity=0.181 Sum_probs=90.1
Q ss_pred ccccccccccHHHHHHHHHHhhccCCccceeeccccCCCCceEehhHHHHHhcCCccEEEccCChHhHHhHhhhccc-Cc
Q psy2887 630 IYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVLININK-KS 708 (899)
Q Consensus 630 ~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~~~~l~~~~~~~~~v~GNHe~~~l~~~~~~~~-~~ 708 (899)
...++|||+++.+|+++++.+... ..|.++++||++++||.+.+++++++++. .+.+|+||||.+++.+..+... ..
T Consensus 14 i~~iSDiHg~~~~l~~vl~~~~~~-~~D~ii~~GDlv~~g~~~~~~~~~l~~~~-~~~~v~GNhD~~~~~~~~~~~~~~~ 91 (270)
T 3qfm_A 14 IALLSDIHGNTTALEAVLADARQL-GVDEYWLLGDILMPGTGRRRILDLLDQLP-ITARVLGNWEDSLWHGVRKELDSTR 91 (270)
T ss_dssp EEEECCCTTCHHHHHHHHHHHHHT-TCCEEEECSCCSSSSSCSHHHHHHHHTSC-EEEECCCHHHHHHHHHHTTCSCTTS
T ss_pred EEEEecCCCCHHHHHHHHHHHHhc-CCCEEEEcCCCCCCCCCHHHHHHHHHccC-CEEEEcCChHHHHHHhhccccCCCc
Confidence 356899999999999999988764 46899999999999999999999998774 4789999999999886654211 11
Q ss_pred h----hchHHHhhCCcChHHHHHHHhcCCceEEe--C--CEEEEecc
Q psy2887 709 K----LDTFDDILDAPDKKKLVSWLRTQPLAIYY--K--KYLMIHAG 747 (899)
Q Consensus 709 ~----~~~~~~~~~~~~~~~~~~~l~~lp~~~~~--~--~~~~vHAg 747 (899)
. ......|......++.++||+++|..... + ++++|||.
T Consensus 92 ~~~~~~~~~~~~~~~~L~~~~~~~L~~LP~~~~~~~~g~~i~lvHg~ 138 (270)
T 3qfm_A 92 PSQRYLLRQCQYVLEEISLEEIEVLHNQPLQIHRQFGDLTVGISHHL 138 (270)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHSCCSEEEEEETTEEEEEESSB
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHhCCCceEEEECCcEEEEEECC
Confidence 1 01123455556668889999999998754 4 58899965
No 166
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.30 E-value=9.1e-12 Score=136.98 Aligned_cols=119 Identities=20% Similarity=0.222 Sum_probs=83.0
Q ss_pred CEEEEEccccccccCCCCCchhhHHHhhhhhhcCC---------------ceEEEEecChhHHHHhhhcCHHHHhcccc-
Q psy2887 86 DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG---------------ELHCIGATTLNEYRQYIEKDAAFERRFQK- 149 (899)
Q Consensus 86 ~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~---------------~v~vI~at~~~~~~~~~~ld~al~~Rf~~- 149 (899)
++||||||++.+.. ...+.|+..++.+ .+++|++||+.+ ..++++|++||..
T Consensus 145 ~~vl~iDEi~~l~~--------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~----~~l~~~L~~R~~~~ 212 (350)
T 1g8p_A 145 RGYLYIDECNLLED--------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEE----GDLRPQLLDRFGLS 212 (350)
T ss_dssp TEEEEETTGGGSCH--------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCS----CCCCHHHHTTCSEE
T ss_pred CCEEEEeChhhCCH--------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCC----CCCCHHHHhhcceE
Confidence 67999999999864 4556777776543 688999999743 2689999999986
Q ss_pred ccccCC-CHHHHHHHHHhhhhh-------------------------hhcccCCCCCHHHHHHHHhhhhhhcccCCCchh
Q psy2887 150 ILVEEP-DIEETISILRGLQKK-------------------------YEVHHGVEITDPAIVAASELSYRYISDRFMPDK 203 (899)
Q Consensus 150 i~l~~p-~~~e~~~il~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 203 (899)
+.+++| +.+++.+|++..+.. .....++.++++++..++..+.+.-. .-+..
T Consensus 213 ~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~--~~~R~ 290 (350)
T 1g8p_A 213 VEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGS--DGLRG 290 (350)
T ss_dssp EECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSS--CSHHH
T ss_pred EEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCC--CCccH
Confidence 999999 567777888653210 01223568999999999888766311 12456
Q ss_pred HHHHHHHHHHhhhhh
Q psy2887 204 AIDLIDEAAAKIKIE 218 (899)
Q Consensus 204 ~~~ll~~a~~~~~~~ 218 (899)
+..+++.+...+...
T Consensus 291 ~~~ll~~a~~~A~~~ 305 (350)
T 1g8p_A 291 ELTLLRSARALAALE 305 (350)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc
Confidence 777777766655443
No 167
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.29 E-value=1.7e-11 Score=133.86 Aligned_cols=214 Identities=13% Similarity=0.123 Sum_probs=128.1
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHH-HHHhccCCCceEEeccccc
Q psy2887 379 LLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTL-SACIFNNEESIIRIDMSEF 457 (899)
Q Consensus 379 l~~l~~~l~~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~l-a~~l~~~~~~~~~~~~~~~ 457 (899)
...+.+.+.. |+||+.++..+.-++.... .. .+...|+||.|+||| ||++|+++ ++.+.+ ..+....++..
T Consensus 205 ~~~l~~sIap-I~G~e~vK~aLll~L~GG~---~k-~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR--~~ft~g~~ss~ 276 (506)
T 3f8t_A 205 LTTFARAIAP-LPGAEEVGKMLALQLFSCV---GK-NSERLHVLLAGYPVV-CSEILHHVLDHLAPR--GVYVDLRRTEL 276 (506)
T ss_dssp HHHHHHHHCC-STTCHHHHHHHHHHHTTCC---SS-GGGCCCEEEESCHHH-HHHHHHHHHHHTCSS--EEEEEGGGCCH
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHHcCCc---cc-cCCceeEEEECCCCh-HHHHHHHHHHHhCCC--eEEecCCCCCc
Confidence 4567778888 9999998888777664321 01 112227999999999 99999999 776611 11222222110
Q ss_pred ccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEe
Q psy2887 458 IEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMT 537 (899)
Q Consensus 458 ~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 537 (899)
.. .... +.+. . | ...-.+.+..+..+|+|+|||+++++..|..|++.||+++++.. |. .-..++.+|+|
T Consensus 277 ~g-Lt~s-~r~~-t---G---~~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~-G~-~lparf~VIAA 345 (506)
T 3f8t_A 277 TD-LTAV-LKED-R---G---WALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVD-GI-ALNARCAVLAA 345 (506)
T ss_dssp HH-HSEE-EEES-S---S---EEEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEET-TE-EEECCCEEEEE
T ss_pred cC-ceEE-EEcC-C---C---cccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEEC-CE-EcCCCeEEEEE
Confidence 00 0000 1111 1 1 00112334445678999999999999999999999999999877 66 44578899999
Q ss_pred cCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecCCCHHHHH-----H-HHHHHHHHHHHHHHhcCcc
Q psy2887 538 SNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNIL-----S-IANIQLNILKNKLLKMNMD 611 (899)
Q Consensus 538 sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~~~~~-----~-i~~~~l~~~~~~~~~~~~~ 611 (899)
+|.-. .... ..+ . -...+++.+++|||.++....+...+.. . +-...+.++....+...+.
T Consensus 346 ~NP~~-~yd~---~~s------~---~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~ 412 (506)
T 3f8t_A 346 INPGE-QWPS---DPP------I---ARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPA 412 (506)
T ss_dssp ECCCC---CC---SCG------G---GGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSC
T ss_pred eCccc-ccCC---CCC------c---cccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCC
Confidence 99643 1100 000 0 0236889999999987766554332211 0 1112333333333323456
Q ss_pred eeecHHHHHHHHh
Q psy2887 612 LKISKAALKKISN 624 (899)
Q Consensus 612 ~~~~~~~~~~L~~ 624 (899)
..+++++.+++.+
T Consensus 413 p~ls~ea~~yI~~ 425 (506)
T 3f8t_A 413 PELTEEARKRLEH 425 (506)
T ss_dssp CEECHHHHHHHHH
T ss_pred ceeCHHHHHHHHH
Confidence 8899999988876
No 168
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.29 E-value=3.2e-11 Score=134.39 Aligned_cols=191 Identities=17% Similarity=0.204 Sum_probs=126.3
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhc------------Cc--ccCch-HHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA------------GT--KYRGE-FEDRLKK 75 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~------------~~--~~~g~-~~~~l~~ 75 (899)
....+++|+||||||||++++.+++.+...... +..++.+++..... +. ...|. ....+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 118 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG----KFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRR 118 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCS----SCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC----CceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence 446689999999999999999999987432100 35677777643210 00 01121 2333445
Q ss_pred HHHHHHhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhh---cCCceEEEEecChhHHHHhhhcCHHHHhccc--cc
Q psy2887 76 ILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL---SRGELHCIGATTLNEYRQYIEKDAAFERRFQ--KI 150 (899)
Q Consensus 76 ~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l---~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~--~i 150 (899)
++..+...+.|.||+|||++.+..... .+....+...+ ....+.+|++|+..++. ..+++.+.+||. .+
T Consensus 119 l~~~l~~~~~~~vlilDE~~~l~~~~~----~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~--~~~~~~~~~r~~~~~i 192 (386)
T 2qby_A 119 LVKAVRDYGSQVVIVLDEIDAFVKKYN----DDILYKLSRINSEVNKSKISFIGITNDVKFV--DLLDPRVKSSLSEEEI 192 (386)
T ss_dssp HHHHHHTCCSCEEEEEETHHHHHHSSC----STHHHHHHHHHHSCCC--EEEEEEESCGGGG--GGCTTHHHHTTTTEEE
T ss_pred HHHHHhccCCeEEEEEcChhhhhccCc----CHHHHHHhhchhhcCCCeEEEEEEECCCChH--hhhCHHHhccCCCeeE
Confidence 555554444589999999999975421 23444555555 45678999999877532 256888999994 59
Q ss_pred cccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHhhh
Q psy2887 151 LVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIK 216 (899)
Q Consensus 151 ~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~~~ 216 (899)
.|++|+.++..++++..+... .....++++++..++..+... .+.|..+++++..++..+.
T Consensus 193 ~l~~l~~~~~~~il~~~~~~~--~~~~~~~~~~~~~l~~~~~~~---~G~~r~~~~ll~~a~~~a~ 253 (386)
T 2qby_A 193 IFPPYNAEELEDILTKRAQMA--FKPGVLPDNVIKLCAALAARE---HGDARRALDLLRVSGEIAE 253 (386)
T ss_dssp EECCCCHHHHHHHHHHHHHHH--BCSSCSCHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHhh--ccCCCCCHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHH
Confidence 999999999999998766531 124578999999999888621 1234577888887765443
No 169
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.25 E-value=8.3e-11 Score=131.26 Aligned_cols=184 Identities=13% Similarity=0.134 Sum_probs=123.6
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhc------------Cc--ccCc-hHHHHHHHHHHH
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA------------GT--KYRG-EFEDRLKKILKE 79 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~------------~~--~~~g-~~~~~l~~~~~~ 79 (899)
+++|+||||||||++++++++.+.... +..++.+++..... +. ...+ .....+..+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~------~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~ 119 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKT------TARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEH 119 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSC------CCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhc------CeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHH
Confidence 799999999999999999999874321 35677777543211 00 0011 122223333333
Q ss_pred HHhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC------CceEEEEecChhHHHHhhhcCHHHHhcccc--cc
Q psy2887 80 ISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR------GELHCIGATTLNEYRQYIEKDAAFERRFQK--IL 151 (899)
Q Consensus 80 ~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~------~~v~vI~at~~~~~~~~~~ld~al~~Rf~~--i~ 151 (899)
+....+|.||+|||++.+. ....+.|...++. ..+.+|++|+..++.. .+++.+.+||.. +.
T Consensus 120 l~~~~~~~vlilDE~~~l~--------~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~--~l~~~~~~r~~~~~i~ 189 (389)
T 1fnn_A 120 LRERDLYMFLVLDDAFNLA--------PDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN--NLDPSTRGIMGKYVIR 189 (389)
T ss_dssp HHHTTCCEEEEEETGGGSC--------HHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH--TSCHHHHHHHTTCEEE
T ss_pred HhhcCCeEEEEEECccccc--------hHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH--HhCHHhhhcCCCceEE
Confidence 3334568899999999982 3455566666642 5788999988775433 478999999984 99
Q ss_pred ccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcc---cCCCchhHHHHHHHHHHhhh
Q psy2887 152 VEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYIS---DRFMPDKAIDLIDEAAAKIK 216 (899)
Q Consensus 152 l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~~~~ll~~a~~~~~ 216 (899)
|++++.++..++++..+.... ....++++++..+++.+.+... ..+.|..+.+++..++..+.
T Consensus 190 ~~pl~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~ 255 (389)
T 1fnn_A 190 FSPYTKDQIFDILLDRAKAGL--AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQ 255 (389)
T ss_dssp CCCCBHHHHHHHHHHHHHHHB--CTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHhhc--CCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999987775421 1346899999999998843210 02345578888887765543
No 170
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.20 E-value=7.4e-12 Score=142.26 Aligned_cols=99 Identities=22% Similarity=0.237 Sum_probs=75.0
Q ss_pred hccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhc
Q psy2887 387 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRL 466 (899)
Q Consensus 387 ~~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l 466 (899)
...++||+++++.+...+.....+.. |..++||+||||||||++|+++|+.+ +...+|+.++++++.+.
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~----~~~~iLl~GppGtGKT~la~ala~~l-~~~~~~~~~~~~~~~~~------ 104 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKM----AGRAVLLAGPPGTGKTALALAIAQEL-GSKVPFCPMVGSEVYST------ 104 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCC----TTCEEEEECCTTSSHHHHHHHHHHHH-CTTSCEEEEEGGGGCCS------
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCC----CCCeEEEECCCcCCHHHHHHHHHHHh-CCCceEEEEeHHHHHHH------
Confidence 36789999999999888877665532 22379999999999999999999998 22389999999887643
Q ss_pred cCCCCCcccccccchhhHHHH------hCCCEEEEEccccccCH
Q psy2887 467 IGAPPGYIGYEEGGYLTEIVR------RKPYSLILLDEIEKANS 504 (899)
Q Consensus 467 ~g~~~~~~g~~~~~~l~~~~~------~~~~~vl~lDEid~~~~ 504 (899)
++|..+. +...++ ...++||||||+|.+.+
T Consensus 105 ------~~~~~~~--~~~~f~~a~~~~~~~~~il~iDEid~l~~ 140 (456)
T 2c9o_A 105 ------EIKKTEV--LMENFRRAIGLRIKETKEVYEGEVTELTP 140 (456)
T ss_dssp ------SSCHHHH--HHHHHHHTEEEEEEEEEEEEEEEEEEEEE
T ss_pred ------hhhhhHH--HHHHHHHHHhhhhcCCcEEEEechhhccc
Confidence 4554443 333333 34678999999998764
No 171
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.19 E-value=1.3e-10 Score=131.67 Aligned_cols=185 Identities=14% Similarity=0.102 Sum_probs=105.9
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEeh-----hhhhcCcccCchHHHHHHHHHHHHHhc--CC
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI-----ALLLAGTKYRGEFEDRLKKILKEISNN--QK 85 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~-----~~l~~~~~~~g~~~~~l~~~~~~~~~~--~~ 85 (899)
..|+||+||||||||++|+++|+.+.. +.++..+.+ +.+. |. +.+..... ...+..+... ..
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l~~--------~~~f~~~~~~~~t~~dL~-G~-~~~~~~~~-~g~~~~~~~g~l~~ 109 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAFQN--------ARAFEYLMTRFSTPEEVF-GP-LSIQALKD-EGRYERLTSGYLPE 109 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGBSS--------CCEEEEECCTTCCHHHHH-CC-BC-----------CBCCTTSGGG
T ss_pred CCeeEeecCchHHHHHHHHHHHHHHhh--------hhHHHHHHHhcCCHHHhc-Cc-ccHHHHhh-chhHHhhhccCCCc
Confidence 468999999999999999999987621 122333322 2222 11 11111000 1112111111 02
Q ss_pred CEEEEEccccccccCCCCCchhhHHHhhhhhhcCCc------------eEEEEecChhHHHHhhhcCHHHHhcccc-ccc
Q psy2887 86 DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGE------------LHCIGATTLNEYRQYIEKDAAFERRFQK-ILV 152 (899)
Q Consensus 86 ~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~~------------v~vI~at~~~~~~~~~~ld~al~~Rf~~-i~l 152 (899)
++||||||++.+.+ ...+.|+..|+.+. ..+|+|||+.+- .....+++.+||.. +.+
T Consensus 110 ~~IL~IDEI~r~~~--------~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe--~~~~~~aLldRF~~~i~v 179 (500)
T 3nbx_X 110 AEIVFLDEIWKAGP--------AILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPE--ADSSLEALYDRMLIRLWL 179 (500)
T ss_dssp CSEEEEESGGGCCH--------HHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCC--TTCTTHHHHTTCCEEEEC
T ss_pred ceeeeHHhHhhhcH--------HHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCC--ccccHHHHHHHHHHHHHH
Confidence 55999999987643 56677888885432 245788885331 11245799999975 889
Q ss_pred cCCCH-HHHHHHHHhhhhhhh-------------------cccCCCCCHHHHHHHHhhhhhhc--c--cCCCchhHHHHH
Q psy2887 153 EEPDI-EETISILRGLQKKYE-------------------VHHGVEITDPAIVAASELSYRYI--S--DRFMPDKAIDLI 208 (899)
Q Consensus 153 ~~p~~-~e~~~il~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~p~~~~~ll 208 (899)
++|+. +++..|++....... ...++.++++++++++++..... . ...-+..+..++
T Consensus 180 ~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~ll 259 (500)
T 3nbx_X 180 DKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAI 259 (500)
T ss_dssp CSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHH
T ss_pred HHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHH
Confidence 99986 778889876542110 12357788888888887763210 0 112344555666
Q ss_pred HHHHHhhhhh
Q psy2887 209 DEAAAKIKIE 218 (899)
Q Consensus 209 ~~a~~~~~~~ 218 (899)
..+.+.+.+.
T Consensus 260 r~A~A~A~l~ 269 (500)
T 3nbx_X 260 RLLQASAFFS 269 (500)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhhc
Confidence 6665555543
No 172
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.18 E-value=1.4e-10 Score=123.43 Aligned_cols=130 Identities=12% Similarity=0.021 Sum_probs=98.0
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhc---CCCEEE
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNN---QKDIII 89 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~---~~~~iL 89 (899)
..++||+||||+|||++|+++|+.+..... ....++.++... ...+ ...++++++.+... ++..|+
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~----~~~d~~~l~~~~-----~~~~--id~ir~li~~~~~~p~~~~~kvv 86 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPP----KASDVLEIDPEG-----ENIG--IDDIRTIKDFLNYSPELYTRKYV 86 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCC----CTTTEEEECCSS-----SCBC--HHHHHHHHHHHTSCCSSSSSEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhc----cCCCEEEEcCCc-----CCCC--HHHHHHHHHHHhhccccCCceEE
Confidence 568999999999999999999986532210 234566665421 1122 23477788877632 235799
Q ss_pred EEccccccccCCCCCchhhHHHhhhhhhcCC--ceEEEEecChhHHHHhhhcCHHHHhccccccccCCCHHHHHHHHHhh
Q psy2887 90 FIDELHTMIGTGKVEGSIDAGNMLKPELSRG--ELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGL 167 (899)
Q Consensus 90 ~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~--~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~il~~~ 167 (899)
||||+|.|.. .+.|.|+..||.+ .+++|++|+.+. .+.|++++| .+.|++|+.++..++++..
T Consensus 87 iIdead~lt~--------~a~naLLk~LEep~~~t~fIl~t~~~~-----kl~~tI~SR--~~~f~~l~~~~i~~~L~~~ 151 (305)
T 2gno_A 87 IVHDCERMTQ--------QAANAFLKALEEPPEYAVIVLNTRRWH-----YLLPTIKSR--VFRVVVNVPKEFRDLVKEK 151 (305)
T ss_dssp EETTGGGBCH--------HHHHHTHHHHHSCCTTEEEEEEESCGG-----GSCHHHHTT--SEEEECCCCHHHHHHHHHH
T ss_pred EeccHHHhCH--------HHHHHHHHHHhCCCCCeEEEEEECChH-----hChHHHHce--eEeCCCCCHHHHHHHHHHH
Confidence 9999999964 5678999999864 688888888876 789999999 8999999999999998766
Q ss_pred h
Q psy2887 168 Q 168 (899)
Q Consensus 168 ~ 168 (899)
+
T Consensus 152 ~ 152 (305)
T 2gno_A 152 I 152 (305)
T ss_dssp H
T ss_pred h
Confidence 5
No 173
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.15 E-value=6.1e-11 Score=112.09 Aligned_cols=116 Identities=13% Similarity=0.024 Sum_probs=79.1
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
....+|||+||||||||++|++++...... +.+++ +++..+.... .....+..+. +++||
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~-------~~~~v-~~~~~~~~~~--------~~~~~~~~a~----~g~l~ 81 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNA-------QGEFV-YRELTPDNAP--------QLNDFIALAQ----GGTLV 81 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTT-------TSCCE-EEECCTTTSS--------CHHHHHHHHT----TSCEE
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCcc-------CCCEE-EECCCCCcch--------hhhcHHHHcC----CcEEE
Confidence 456689999999999999999999865332 45677 8887665331 2445555553 45899
Q ss_pred EccccccccCCCCCchhhHHHhhhhhhc--CCceEEEEecChhHHH--HhhhcCHHHHhccccccccC
Q psy2887 91 IDELHTMIGTGKVEGSIDAGNMLKPELS--RGELHCIGATTLNEYR--QYIEKDAAFERRFQKILVEE 154 (899)
Q Consensus 91 iDEi~~l~~~~~~~~~~~~~~~l~~~l~--~~~v~vI~at~~~~~~--~~~~ld~al~~Rf~~i~l~~ 154 (899)
|||++.+.. +....|...+. ...+.+|++||.+... ..-.+.+.|..|+..+.+..
T Consensus 82 ldei~~l~~--------~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~~~~~L~~rl~~~~i~l 141 (145)
T 3n70_A 82 LSHPEHLTR--------EQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYCFAMTQIAC 141 (145)
T ss_dssp EECGGGSCH--------HHHHHHHHHHHSSSCSSCEEEEESSCHHHHHHHSCCCHHHHHHHHHHEEEC
T ss_pred EcChHHCCH--------HHHHHHHHHHhhcCCCEEEEEECCcCHHHHHHcCCCCHHHHHHhcCCEEeC
Confidence 999999864 34455666664 3457889999875421 22346788888887544333
No 174
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.05 E-value=2.5e-11 Score=114.47 Aligned_cols=111 Identities=10% Similarity=0.098 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
....+++|+||||||||++|+++++.. . +++.+++..+.. . ....++..+. +++||
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~----------~-~~~~~~~~~~~~--~-------~~~~~~~~a~----~~~l~ 80 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNG----------T-PWVSPARVEYLI--D-------MPMELLQKAE----GGVLY 80 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTT----------S-CEECCSSTTHHH--H-------CHHHHHHHTT----TSEEE
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhC----------C-CeEEechhhCCh--H-------hhhhHHHhCC----CCeEE
Confidence 345689999999999999999998765 3 677777665441 1 1344555442 45999
Q ss_pred EccccccccCCCCCchhhHHHhhhhhhc---CCceEEEEecChhHHH-HhhhcCHHHHhcccc--ccccC
Q psy2887 91 IDELHTMIGTGKVEGSIDAGNMLKPELS---RGELHCIGATTLNEYR-QYIEKDAAFERRFQK--ILVEE 154 (899)
Q Consensus 91 iDEi~~l~~~~~~~~~~~~~~~l~~~l~---~~~v~vI~at~~~~~~-~~~~ld~al~~Rf~~--i~l~~ 154 (899)
|||++.+.. +....|...++ ...+.+|++||.+... ..- +++.|..||.. |.+|+
T Consensus 81 lDei~~l~~--------~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~-~~~~L~~rl~~~~i~lPp 141 (143)
T 3co5_A 81 VGDIAQYSR--------NIQTGITFIIGKAERCRVRVIASCSYAAGSDGIS-CEEKLAGLFSESVVRIPP 141 (143)
T ss_dssp EEECTTCCH--------HHHHHHHHHHHHHTTTTCEEEEEEEECTTTC--C-HHHHHHHHSSSEEEEECC
T ss_pred EeChHHCCH--------HHHHHHHHHHHhCCCCCEEEEEecCCCHHHHHhC-ccHHHHHHhcCcEEeCCC
Confidence 999999854 34455666665 3468899999876311 111 55777888875 44444
No 175
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.01 E-value=7.6e-10 Score=139.87 Aligned_cols=85 Identities=18% Similarity=0.230 Sum_probs=57.7
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCC-Ccccc----ccc--chhhHHHHhCCCE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPP-GYIGY----EEG--GYLTEIVRRKPYS 492 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~~~g~----~~~--~~l~~~~~~~~~~ 492 (899)
.+|++||||||||++|++++...-..+.+.+.++..+..+.... .-+|-.. .+++. ++. +.++..++...++
T Consensus 1084 ~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~-~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~ 1162 (1706)
T 3cmw_A 1084 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYA-RKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 1162 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHH-HHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred EEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHH-HHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCe
Confidence 59999999999999999999877555778777877665432111 1222111 13333 222 5566777888899
Q ss_pred EEEEccccccCHH
Q psy2887 493 LILLDEIEKANSD 505 (899)
Q Consensus 493 vl~lDEid~~~~~ 505 (899)
++|+||++.+.|.
T Consensus 1163 ~i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1163 VIVVDSVAALTPK 1175 (1706)
T ss_dssp EEEESCGGGCCCH
T ss_pred EEEeCchHhcCcc
Confidence 9999999866554
No 176
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.00 E-value=8.4e-10 Score=129.76 Aligned_cols=121 Identities=12% Similarity=0.124 Sum_probs=83.8
Q ss_pred CEEEEEccccccccCCCCCchhhHHHhhhhhhcC-----------------------CceEEEEecChhHHHHhhhcCHH
Q psy2887 86 DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-----------------------GELHCIGATTLNEYRQYIEKDAA 142 (899)
Q Consensus 86 ~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~-----------------------~~v~vI~at~~~~~~~~~~ld~a 142 (899)
+.+|||||++.|.+ ...+.|+..|+. .++.+|++||+... ..++++
T Consensus 202 ~gvL~LDEi~~l~~--------~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~---~~l~~~ 270 (604)
T 3k1j_A 202 KGVLFIDEIATLSL--------KMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTV---DKMHPA 270 (604)
T ss_dssp TSEEEETTGGGSCH--------HHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHH---HHSCHH
T ss_pred CCEEEEechhhCCH--------HHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHH---hhcCHH
Confidence 56999999999843 566677777752 24679999998742 268999
Q ss_pred HHhcccc----ccccCC---CHHHHHHHHHhhhhhhhcc-cCCCCCHHHHHHHHhhhhhhcccCC----CchhHHHHHHH
Q psy2887 143 FERRFQK----ILVEEP---DIEETISILRGLQKKYEVH-HGVEITDPAIVAASELSYRYISDRF----MPDKAIDLIDE 210 (899)
Q Consensus 143 l~~Rf~~----i~l~~p---~~~e~~~il~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~p~~~~~ll~~ 210 (899)
|++||.. +.|+.. +.+....+++.+.+..... ....++++++..+++.+.+..+.+. .+..+.+++..
T Consensus 271 l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~ 350 (604)
T 3k1j_A 271 LRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRA 350 (604)
T ss_dssp HHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHH
T ss_pred HHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHH
Confidence 9999963 444322 4566667776665544322 3357999999999998876665544 46677788887
Q ss_pred HHHhhhh
Q psy2887 211 AAAKIKI 217 (899)
Q Consensus 211 a~~~~~~ 217 (899)
|...+..
T Consensus 351 A~~~A~~ 357 (604)
T 3k1j_A 351 AGDIAVK 357 (604)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7665543
No 177
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.94 E-value=9.9e-10 Score=108.01 Aligned_cols=125 Identities=15% Similarity=0.200 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhc-cCCCceEEecccccccccchhhccCCCC
Q psy2887 393 QDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIF-NNEESIIRIDMSEFIEKHSISRLIGAPP 471 (899)
Q Consensus 393 q~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 471 (899)
+..+++.+...+.... .+. ..+++|+||||||||+++++++..+. ..+..++.+++.++....... +..
T Consensus 19 ~~~~~~~~~~~~~~~~----~~~--g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~-- 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFN----PEE--GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHL--MDE-- 88 (180)
T ss_dssp HHHHHHHHHHHHHSCC----GGG--CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHH--HHH--
T ss_pred HHHHHHHHHHHHHhcc----ccC--CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH--hcC--
Confidence 4555555555554321 111 12699999999999999999999985 445566777766654321110 000
Q ss_pred CcccccccchhhHHHHhCCCEEEEEcccc--ccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhh
Q psy2887 472 GYIGYEEGGYLTEIVRRKPYSLILLDEIE--KANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDK 544 (899)
Q Consensus 472 ~~~g~~~~~~l~~~~~~~~~~vl~lDEid--~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~ 544 (899)
.....+...+. .+.+|+|||++ .+++..+..|+.+++.. ...+..+|+|||...+.
T Consensus 89 -----~~~~~~~~~~~--~~~llilDE~~~~~~~~~~~~~l~~ll~~~----------~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 89 -----GKDTKFLKTVL--NSPVLVLDDLGSERLSDWQRELISYIITYR----------YNNLKSTIITTNYSLQR 146 (180)
T ss_dssp -----TCCSHHHHHHH--TCSEEEEETCSSSCCCHHHHHHHHHHHHHH----------HHTTCEEEEECCCCSCC
T ss_pred -----chHHHHHHHhc--CCCEEEEeCCCCCcCCHHHHHHHHHHHHHH----------HHcCCCEEEEcCCChhH
Confidence 00112333333 34699999998 57788888888888751 11456789999988764
No 178
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.94 E-value=3.3e-09 Score=119.17 Aligned_cols=202 Identities=17% Similarity=0.180 Sum_probs=123.5
Q ss_pred ccCCChHHHHHHHHHHH-HHhhcCCCCCCCCceEEEE--ecCCCChHHHHHHHHHHHhccC------CCceEEecccccc
Q psy2887 388 KRVVGQDEAISAVSNAI-RRSRSGLSDAKRPYGSFMF--LGPTGVGKTELCKTLSACIFNN------EESIIRIDMSEFI 458 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i-~~~~~~~~~~~~~~~~ill--~GppGtGKT~lA~~la~~l~~~------~~~~~~~~~~~~~ 458 (899)
..++|.+..++.+...+ .....+.. ....++++ +||||||||++++.+++.+... +..++.++|....
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~---~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAG---LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAP 98 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSC---BCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCC
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCC---CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCC
Confidence 56889999999999888 65542210 11236888 9999999999999999887331 4567788875543
Q ss_pred cccch----hhccCCCCCccccccc---chhhHHHHh-CCCEEEEEccccccC------HHHHHHHHHhhcCCceecCCC
Q psy2887 459 EKHSI----SRLIGAPPGYIGYEEG---GYLTEIVRR-KPYSLILLDEIEKAN------SDVFNILLQILDDGRLTDNRG 524 (899)
Q Consensus 459 ~~~~~----~~l~g~~~~~~g~~~~---~~l~~~~~~-~~~~vl~lDEid~~~------~~~~~~Ll~~le~g~~~~~~g 524 (899)
..... ...+|......|.... ..+...+.. ..+.||+|||++.+. ...+..|+..+++... .+
T Consensus 99 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~---~~ 175 (412)
T 1w5s_A 99 NLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPS---RD 175 (412)
T ss_dssp SHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCC---TT
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhccc---CC
Confidence 22111 1122332211121111 223333432 346799999999874 4677777777764110 00
Q ss_pred ceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCC---hhHhhccCeEEEecCCCHHHHHHHHHHHHHHH
Q psy2887 525 RTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFR---PEFINRIDDIIVFRYLNRKNILSIANIQLNIL 601 (899)
Q Consensus 525 ~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~ 601 (899)
...++.+|++++...- ...+. +.+.+++...+.|.|++.+++.+++...+...
T Consensus 176 ---~~~~v~lI~~~~~~~~---------------------~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~ 231 (412)
T 1w5s_A 176 ---GVNRIGFLLVASDVRA---------------------LSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELG 231 (412)
T ss_dssp ---SCCBEEEEEEEEETHH---------------------HHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred ---CCceEEEEEEeccccH---------------------HHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhc
Confidence 0145678878764221 11122 45667776669999999999999987766321
Q ss_pred HHHHHhcCcceeecHHHHHHHHhcc
Q psy2887 602 KNKLLKMNMDLKISKAALKKISNIG 626 (899)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~L~~~~ 626 (899)
+....++++++..+.+..
T Consensus 232 -------~~~~~~~~~~~~~i~~~~ 249 (412)
T 1w5s_A 232 -------LRDTVWEPRHLELISDVY 249 (412)
T ss_dssp -------BCTTSCCHHHHHHHHHHH
T ss_pred -------CCCCCCChHHHHHHHHHH
Confidence 212357888888887743
No 179
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.93 E-value=3.3e-09 Score=135.47 Aligned_cols=84 Identities=18% Similarity=0.219 Sum_probs=57.3
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCC-------CcccccccchhhHHHHhCCCE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPP-------GYIGYEEGGYLTEIVRRKPYS 492 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-------~~~g~~~~~~l~~~~~~~~~~ 492 (899)
+++|+||||||||+||.+++......+..+..++..+..+... ..-+|... ...+..-...+...++...++
T Consensus 1429 ~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~-a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~~ 1507 (2050)
T 3cmu_A 1429 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 1507 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH-HHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH-HHHcCCCchhceeecCChHHHHHHHHHHHHhcCCCC
Confidence 6999999999999999999999877788888888876544332 22223110 011111123445566778889
Q ss_pred EEEEccccccCH
Q psy2887 493 LILLDEIEKANS 504 (899)
Q Consensus 493 vl~lDEid~~~~ 504 (899)
+|||||++.+.|
T Consensus 1508 lVVIDsi~al~p 1519 (2050)
T 3cmu_A 1508 VIVVDSVAALTP 1519 (2050)
T ss_dssp EEEESCGGGCCC
T ss_pred EEEEcChhHhcc
Confidence 999999975554
No 180
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.91 E-value=3.2e-10 Score=132.13 Aligned_cols=184 Identities=15% Similarity=0.136 Sum_probs=103.7
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCc--cCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNS--LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDII 88 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~--l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~i 88 (899)
+...|+||+||||||||++|+++|+.+.....+.. .....+......... .|.... ....+..+ .++|
T Consensus 325 r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~-----~g~~~~-~~G~l~~A----~~gi 394 (595)
T 3f9v_A 325 RGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKG-----TGEYYL-EAGALVLA----DGGI 394 (595)
T ss_dssp CCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGG-----TSSCSE-EECHHHHH----SSSE
T ss_pred CCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccc-----cccccc-cCCeeEec----CCCc
Confidence 34459999999999999999999987632111100 001111111000001 111000 00112222 2459
Q ss_pred EEEccccccccCCCCCchhhHHHhhhhhhcCC---------------ceEEEEecChhH--HH------HhhhcCHHHHh
Q psy2887 89 IFIDELHTMIGTGKVEGSIDAGNMLKPELSRG---------------ELHCIGATTLNE--YR------QYIEKDAAFER 145 (899)
Q Consensus 89 L~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~---------------~v~vI~at~~~~--~~------~~~~ld~al~~ 145 (899)
|||||++.+.+ +..+.|++.|+.+ .+.+|+|||+.. |. ..+.++++|++
T Consensus 395 l~IDEid~l~~--------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~ 466 (595)
T 3f9v_A 395 AVIDEIDKMRD--------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS 466 (595)
T ss_dssp ECCTTTTCCCS--------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG
T ss_pred EEeehhhhCCH--------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh
Confidence 99999999854 4566788877643 356999999863 11 01278999999
Q ss_pred cccc--ccccCCCHHHHHHHHHhhhhhhhc-ccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 146 RFQK--ILVEEPDIEETISILRGLQKKYEV-HHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 146 Rf~~--i~l~~p~~~e~~~il~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
||+. +..+.|+.+ ...|++.++..... .....++.+.+......+...+. ..+++.+.+.+......
T Consensus 467 RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~-p~ls~ea~~~l~~~y~~ 536 (595)
T 3f9v_A 467 RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVT-PKITSEAKNLITDFFVE 536 (595)
T ss_dssp GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHC-CCCCCCTHHHHHHHHTT
T ss_pred hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHH
Confidence 9974 556667766 77787777654321 11223555555555555544332 24555666666655544
No 181
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.88 E-value=1.3e-08 Score=114.39 Aligned_cols=196 Identities=14% Similarity=0.104 Sum_probs=117.2
Q ss_pred CCCCeEE--EcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhc------------Ccc--cCch-HHHHHH
Q psy2887 12 FTSNPVL--IGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA------------GTK--YRGE-FEDRLK 74 (899)
Q Consensus 12 ~~~~iLL--~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~------------~~~--~~g~-~~~~l~ 74 (899)
...+++| +||||+|||++++.+++.+..... ..-.+..++.+++..... +.. ..+. ....+.
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 127 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAA-KEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILK 127 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHH-HTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHh-ccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHH
Confidence 3457888 999999999999999988743100 000034556666432100 000 0111 122233
Q ss_pred HHHHHHHhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhc-----C--CceEEEEecChhHHHHhhhcC---HHHH
Q psy2887 75 KILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS-----R--GELHCIGATTLNEYRQYIEKD---AAFE 144 (899)
Q Consensus 75 ~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~-----~--~~v~vI~at~~~~~~~~~~ld---~al~ 144 (899)
.+...+.....+.||+|||++.+..... ...+....+...+. . ..+.+|++|+..++.. .++ +.+.
T Consensus 128 ~l~~~l~~~~~~~llvlDe~~~l~~~~~--~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~--~l~~~~~~~~ 203 (412)
T 1w5s_A 128 ALVDNLYVENHYLLVILDEFQSMLSSPR--IAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALS--YMREKIPQVE 203 (412)
T ss_dssp HHHHHHHHHTCEEEEEEESTHHHHSCTT--SCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHH--HHHHHCHHHH
T ss_pred HHHHHHHhcCCeEEEEEeCHHHHhhccC--cchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHH--HHhhhcchhh
Confidence 3333333335688999999999965311 11233333333332 3 6788888887665432 234 6777
Q ss_pred hcccc-ccccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 145 RRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 145 ~Rf~~-i~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
++|.. +.+++++.++..++++..+.... ....++++++..+++.+....+..+.|..+..++..+...
T Consensus 204 ~~~~~~i~l~~l~~~e~~~ll~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~ 272 (412)
T 1w5s_A 204 SQIGFKLHLPAYKSRELYTILEQRAELGL--RDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEM 272 (412)
T ss_dssp TTCSEEEECCCCCHHHHHHHHHHHHHHHB--CTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHH
T ss_pred hhcCCeeeeCCCCHHHHHHHHHHHHHhcC--CCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHH
Confidence 87754 89999999999999987655321 2245788999999988873322224566777777766543
No 182
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.87 E-value=1.8e-09 Score=102.05 Aligned_cols=92 Identities=17% Similarity=0.252 Sum_probs=66.5
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 499 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 499 (899)
.++|+||+|+|||+|+++++..+...+.+.+.++..++... .+ + ..+.+|+|||+
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~--------------------~~---~--~~~~lLilDE~ 92 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT--------------------DA---A--FEAEYLAVDQV 92 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC--------------------GG---G--GGCSEEEEEST
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH--------------------HH---H--hCCCEEEEeCc
Confidence 68999999999999999999998665666777776665432 01 1 13469999999
Q ss_pred cccCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhh
Q psy2887 500 EKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKI 545 (899)
Q Consensus 500 d~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~ 545 (899)
+.+.+..+..|+.+++.-. .....++|+|||..+..+
T Consensus 93 ~~~~~~~~~~l~~li~~~~---------~~g~~~iiits~~~p~~l 129 (149)
T 2kjq_A 93 EKLGNEEQALLFSIFNRFR---------NSGKGFLLLGSEYTPQQL 129 (149)
T ss_dssp TCCCSHHHHHHHHHHHHHH---------HHTCCEEEEEESSCTTTS
T ss_pred cccChHHHHHHHHHHHHHH---------HcCCcEEEEECCCCHHHc
Confidence 9998877888888887411 111234788999776643
No 183
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7
Probab=98.84 E-value=6.9e-09 Score=104.22 Aligned_cols=70 Identities=20% Similarity=0.346 Sum_probs=57.1
Q ss_pred ccccccccccHHHHHHHHHHhhccCCccceeeccccCCCCce--------EehhHHHHHhcCCccEEEccCChHhHHhH
Q psy2887 630 IYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQ--------SLDTLRMVYSMRNYAKIVLGNHEIHLLDV 700 (899)
Q Consensus 630 ~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~--------~~~~~~~l~~~~~~~~~v~GNHe~~~l~~ 700 (899)
...++|+|+..+.++++++.+... ..|.++++||++++|+. +.++++++.++...+.+|+||||..+..+
T Consensus 28 i~~iSD~H~~~~~l~~~l~~~~~~-~~d~vi~~GDl~~~g~~~~~~~~~~~~~~~~~l~~~~~~v~~V~GNHD~~~~~~ 105 (208)
T 1su1_A 28 LMFASDIHGSLPATERVLELFAQS-GAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEVAHKVIAVRGNCDSEVDQM 105 (208)
T ss_dssp EEEECCCTTBHHHHHHHHHHHHHH-TCSEEEECSCCSCCCTTSCCCTTBCHHHHHHHHHTTGGGEEECCCTTCCHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHHhc-CCCEEEECCCccccCcccccccccCHHHHHHHHHhcCCceEEEECCCchHHHHh
Confidence 466899999999999999887654 34899999999999983 56788888877546889999999876543
No 184
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.76 E-value=6.5e-09 Score=104.23 Aligned_cols=108 Identities=19% Similarity=0.267 Sum_probs=69.3
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 499 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 499 (899)
+++|+||||||||++|+++++.+...+.+++.++++++..... ..+.. .....+...+... .+|||||+
T Consensus 56 ~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-------~~~~~~~~~~~~~--~~lilDei 124 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELK--HSLQD-------QTMNEKLDYIKKV--PVLMLDDL 124 (202)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHH--HC----------CCCHHHHHHHHHS--SEEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHH--HHhcc-------chHHHHHHHhcCC--CEEEEcCC
Confidence 7999999999999999999999977778888888876543211 00100 0112233444443 49999999
Q ss_pred cccC--HHHHHHHH-HhhcCCceecCCCceEecCCeEEEEecCCChhhhhhh
Q psy2887 500 EKAN--SDVFNILL-QILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEM 548 (899)
Q Consensus 500 d~~~--~~~~~~Ll-~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~ 548 (899)
+... +..+..|+ .+++... ..+..+|+|||..++.+...
T Consensus 125 ~~~~~~~~~~~~ll~~~l~~~~----------~~~~~~i~tsn~~~~~l~~~ 166 (202)
T 2w58_A 125 GAEAMSSWVRDDVFGPILQYRM----------FENLPTFFTSNFDMQQLAHH 166 (202)
T ss_dssp CCC---CCGGGTTHHHHHHHHH----------HTTCCEEEEESSCHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHH----------hCCCCEEEEcCCCHHHHHHH
Confidence 6643 33344344 3554310 13456899999988876553
No 185
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.69 E-value=1e-07 Score=104.41 Aligned_cols=159 Identities=17% Similarity=0.171 Sum_probs=103.3
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCc-----------ccCchHHHHHHHHHHHH
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGT-----------KYRGEFEDRLKKILKEI 80 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~-----------~~~g~~~~~l~~~~~~~ 80 (899)
...+++++|++||||+++|+++...... ...++.++|..+.... .+.|... .-...|+.+
T Consensus 151 ~~~~vli~GesGtGKe~lAr~ih~~s~r--------~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~-~~~g~~~~a 221 (368)
T 3dzd_A 151 SKAPVLITGESGTGKEIVARLIHRYSGR--------KGAFVDLNCASIPQELAESELFGHEKGAFTGALT-RKKGKLELA 221 (368)
T ss_dssp SCSCEEEECCTTSSHHHHHHHHHHHHCC--------CSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCC-CEECHHHHT
T ss_pred cchhheEEeCCCchHHHHHHHHHHhccc--------cCCcEEEEcccCChHHHHHHhcCccccccCCccc-ccCChHhhc
Confidence 4567999999999999999999876622 2238888887653110 0111100 001123333
Q ss_pred HhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC-------------ceEEEEecChhHHH--HhhhcCHHHHh
Q psy2887 81 SNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCIGATTLNEYR--QYIEKDAAFER 145 (899)
Q Consensus 81 ~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~-------------~v~vI~at~~~~~~--~~~~ld~al~~ 145 (899)
.++.|||||++.|.. ..+..|+..++.+ .+.+|++||..... ..-...+.|..
T Consensus 222 ----~~gtlfldei~~l~~--------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~ 289 (368)
T 3dzd_A 222 ----DQGTLFLDEVGELDQ--------RVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYY 289 (368)
T ss_dssp ----TTSEEEEETGGGSCH--------HHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHH
T ss_pred ----CCCeEEecChhhCCH--------HHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHH
Confidence 245899999999964 5666788888643 46799999976422 12234668888
Q ss_pred cccc--ccccCCCH--HHHHHHHHhhhhhhhcccC---CCCCHHHHHHHHhhh
Q psy2887 146 RFQK--ILVEEPDI--EETISILRGLQKKYEVHHG---VEITDPAIVAASELS 191 (899)
Q Consensus 146 Rf~~--i~l~~p~~--~e~~~il~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 191 (899)
|+.. |.+|+... ++...+++.+++++....+ ..+++++++.+....
T Consensus 290 rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 342 (368)
T 3dzd_A 290 RLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQE 342 (368)
T ss_dssp HHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCC
T ss_pred HhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCC
Confidence 9986 44555544 6677777888777654333 468999998876553
No 186
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}
Probab=98.66 E-value=3e-08 Score=96.74 Aligned_cols=61 Identities=21% Similarity=0.104 Sum_probs=47.0
Q ss_pred cccccccccc--cHHHHHHHHHHhhccCCccceeeccccCCCCceEehhHHHHHhcCCccEEEccCChHh
Q psy2887 629 LIYGARDVHG--CKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIH 696 (899)
Q Consensus 629 ~~~~~~di~~--~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~~~~l~~~~~~~~~v~GNHe~~ 696 (899)
....++|+|+ ...++.++++++. ...|.++++||+++. ++++++.++...+.+|+||||..
T Consensus 24 ri~~iSD~Hg~~~~~~l~~~l~~~~--~~~D~ii~~GD~~~~-----~~~~~l~~~~~~v~~V~GNhD~~ 86 (178)
T 2kkn_A 24 RFLLISDSHVPVRMASLPDEILNSL--KEYDGVIGLGDYVDL-----DTVILLEKFSKEFYGVHGNMDYP 86 (178)
T ss_dssp EEEEECCCCBTTTTCCCCHHHHHGG--GGCSEEEESSCBSCH-----HHHHHHHHHTSSEEECCCSSSCG
T ss_pred EEEEEecccCCCCHHHHHHHHHHHh--cCCCEEEECCCCCCH-----HHHHHHHhcCCCEEEEECCCCcH
Confidence 3466899996 5556777776654 345899999999984 68888887754589999999965
No 187
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.66 E-value=1.5e-08 Score=108.23 Aligned_cols=109 Identities=19% Similarity=0.227 Sum_probs=68.5
Q ss_pred eEEEEecCCCChHHHHHHHHHHHhc-cCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEc
Q psy2887 419 GSFMFLGPTGVGKTELCKTLSACIF-NNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLD 497 (899)
Q Consensus 419 ~~ill~GppGtGKT~lA~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lD 497 (899)
.+++|+||||||||+||+++|+.+. ..+.+++.++++++... +.+... .| ....+...+... .+||||
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~-----l~~~~~--~~--~~~~~~~~~~~~--~lLiiD 221 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAID-----VKNAIS--NG--SVKEEIDAVKNV--PVLILD 221 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHH-----HHCCCC--------CCTTHHHHTS--SEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHH-----HHHHhc--cc--hHHHHHHHhcCC--CEEEEc
Confidence 3799999999999999999999997 77788888888766432 111100 00 011233444443 499999
Q ss_pred ccccc--CHHHHHHHH-HhhcCCceecCCCceEecCCeEEEEecCCChhhhhhh
Q psy2887 498 EIEKA--NSDVFNILL-QILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEM 548 (899)
Q Consensus 498 Eid~~--~~~~~~~Ll-~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~ 548 (899)
|++.. .+..++.|+ .+++... ..+..+|+|||.+++.+...
T Consensus 222 dig~~~~~~~~~~~ll~~ll~~r~----------~~~~~~IitSN~~~~~l~~~ 265 (308)
T 2qgz_A 222 DIGAEQATSWVRDEVLQVILQYRM----------LEELPTFFTSNYSFADLERK 265 (308)
T ss_dssp TCCC------CTTTTHHHHHHHHH----------HHTCCEEEEESSCHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHH----------HCCCcEEEECCCCHHHHHHH
Confidence 99644 444444343 3555311 12456899999998877664
No 188
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.66 E-value=2.2e-07 Score=101.45 Aligned_cols=163 Identities=12% Similarity=0.109 Sum_probs=111.6
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCC-ceEEecccccccccchhhccCCCCCcccccccchhhHHHH----hCCCEEE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEE-SIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVR----RKPYSLI 494 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~-~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl 494 (899)
.+||+||+|+||++.++.+++.+...+. ++..+... +....+.+.+.+. .++..|+
T Consensus 20 ~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------------------~~~~~~~l~~~~~~~plf~~~kvv 80 (343)
T 1jr3_D 20 AYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-------------------PNTDWNAIFSLCQAMSLFASRQTL 80 (343)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-------------------TTCCHHHHHHHHHHHHHCCSCEEE
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-------------------CCCCHHHHHHHhcCcCCccCCeEE
Confidence 6999999999999999999998753321 21111100 0011233433333 2456799
Q ss_pred EEccccc-cCHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCC-ChhhhhhhhcCcHHHHHHHHHHHHhhcCChhH
Q psy2887 495 LLDEIEK-ANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNL-GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEF 572 (899)
Q Consensus 495 ~lDEid~-~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 572 (899)
+|||++. +....++.|+..+++ +..++++|++++. .... . ...+.+.+
T Consensus 81 ii~~~~~kl~~~~~~aLl~~le~-----------p~~~~~~il~~~~~~~~~--~-----------------~~k~~~~i 130 (343)
T 1jr3_D 81 LLLLPENGPNAAINEQLLTLTGL-----------LHDDLLLIVRGNKLSKAQ--E-----------------NAAWFTAL 130 (343)
T ss_dssp EEECCSSCCCTTHHHHHHHHHTT-----------CBTTEEEEEEESCCCTTT--T-----------------TSHHHHHH
T ss_pred EEECCCCCCChHHHHHHHHHHhc-----------CCCCeEEEEEcCCCChhh--H-----------------hhHHHHHH
Confidence 9999999 999999999999997 4467777777653 2110 0 12344567
Q ss_pred hhccCeEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHhcccCcccccccccccHHHHHHHH
Q psy2887 573 INRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 647 (899)
Q Consensus 573 ~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~di~~~~~~l~~~l 647 (899)
.+|+ .++.|.|++.+++.+.+...+ ...| +.+++++++.|++. .-||+......|+++.
T Consensus 131 ~sr~-~~~~~~~l~~~~l~~~l~~~~-------~~~g--~~i~~~a~~~l~~~------~~gdl~~~~~elekl~ 189 (343)
T 1jr3_D 131 ANRS-VQVTCQTPEQAQLPRWVAARA-------KQLN--LELDDAANQVLCYC------YEGNLLALAQALERLS 189 (343)
T ss_dssp TTTC-EEEEECCCCTTHHHHHHHHHH-------HHTT--CEECHHHHHHHHHS------STTCHHHHHHHHHHHH
T ss_pred HhCc-eEEEeeCCCHHHHHHHHHHHH-------HHcC--CCCCHHHHHHHHHH------hchHHHHHHHHHHHHH
Confidence 8999 899999999999998877666 3345 78999999999982 3356665555566654
No 189
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.64 E-value=1.1e-07 Score=105.28 Aligned_cols=160 Identities=18% Similarity=0.218 Sum_probs=102.6
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhc--------C---cccCchHHHHHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA--------G---TKYRGEFEDRLKKILKE 79 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~--------~---~~~~g~~~~~l~~~~~~ 79 (899)
....+++++|++|||||++|+++....... ..+++.++|+.+.. | +.+.|... .....|..
T Consensus 158 ~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~-------~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~-~~~g~~~~ 229 (387)
T 1ny5_A 158 CAECPVLITGESGVGKEVVARLIHKLSDRS-------KEPFVALNVASIPRDIFEAELFGYEKGAFTGAVS-SKEGFFEL 229 (387)
T ss_dssp TCCSCEEEECSTTSSHHHHHHHHHHHSTTT-------TSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCS-CBCCHHHH
T ss_pred CCCCCeEEecCCCcCHHHHHHHHHHhcCCC-------CCCeEEEecCCCCHHHHHHHhcCCCCCCCCCccc-ccCCceee
Confidence 345689999999999999999998765322 56789999876431 1 01111111 01123333
Q ss_pred HHhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC-------------ceEEEEecChhHHH--HhhhcCHHHH
Q psy2887 80 ISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCIGATTLNEYR--QYIEKDAAFE 144 (899)
Q Consensus 80 ~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~-------------~v~vI~at~~~~~~--~~~~ld~al~ 144 (899)
+ .+++|||||++.|.. +.+..|+..++.+ ++.+|+|||..-.. ..-...+.|.
T Consensus 230 a----~~gtlfldei~~l~~--------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~ 297 (387)
T 1ny5_A 230 A----DGGTLFLDEIGELSL--------EAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLY 297 (387)
T ss_dssp T----TTSEEEEESGGGCCH--------HHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHH
T ss_pred C----CCcEEEEcChhhCCH--------HHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHH
Confidence 3 245999999999964 5666777777532 57899999975321 1224567788
Q ss_pred hccccccccCCC----HHHHHHHHHhhhhhhhcccC---CCCCHHHHHHHHhh
Q psy2887 145 RRFQKILVEEPD----IEETISILRGLQKKYEVHHG---VEITDPAIVAASEL 190 (899)
Q Consensus 145 ~Rf~~i~l~~p~----~~e~~~il~~~~~~~~~~~~---~~~~~~~~~~~~~~ 190 (899)
.|+..+.+..|. .++...+++.+++++....+ ..+++++++.+...
T Consensus 298 ~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~ 350 (387)
T 1ny5_A 298 YRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSY 350 (387)
T ss_dssp HHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHS
T ss_pred HhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC
Confidence 888765555554 36666677777776654333 34888988877544
No 190
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.59 E-value=7.3e-08 Score=90.97 Aligned_cols=106 Identities=11% Similarity=0.150 Sum_probs=65.2
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEE
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFI 91 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~i 91 (899)
....++|+||+|+|||||++++++.+... +..++.++...+... . .. ..+.+|+|
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-------g~~~~~~~~~~~~~~------------~----~~--~~~~lLil 89 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-------GKNAAYIDAASMPLT------------D----AA--FEAEYLAV 89 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-------TCCEEEEETTTSCCC------------G----GG--GGCSEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-------CCcEEEEcHHHhhHH------------H----HH--hCCCEEEE
Confidence 45578999999999999999999988532 445666665444311 0 11 13569999
Q ss_pred ccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecCh-hHHHHhhhcCHHHHhcccc
Q psy2887 92 DELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTL-NEYRQYIEKDAAFERRFQK 149 (899)
Q Consensus 92 DEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~-~~~~~~~~ld~al~~Rf~~ 149 (899)
||++.+.... .....+.+....+++..++|.+|+. +. ..... +.|.+||..
T Consensus 90 DE~~~~~~~~----~~~l~~li~~~~~~g~~~iiits~~~p~--~l~~~-~~L~SRl~~ 141 (149)
T 2kjq_A 90 DQVEKLGNEE----QALLFSIFNRFRNSGKGFLLLGSEYTPQ--QLVIR-EDLRTRMAY 141 (149)
T ss_dssp ESTTCCCSHH----HHHHHHHHHHHHHHTCCEEEEEESSCTT--TSSCC-HHHHHHGGG
T ss_pred eCccccChHH----HHHHHHHHHHHHHcCCcEEEEECCCCHH--Hcccc-HHHHHHHhc
Confidence 9999864321 2233444444445555434445553 33 11123 899999963
No 191
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=98.56 E-value=1.6e-07 Score=92.56 Aligned_cols=64 Identities=13% Similarity=0.126 Sum_probs=51.7
Q ss_pred ccccccccccHHHHHHHHHHhhccCCccceeeccccCCCCceEehhHHHHHhcCCccEEEccCChHhHHh
Q psy2887 630 IYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLD 699 (899)
Q Consensus 630 ~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~~~~l~~~~~~~~~v~GNHe~~~l~ 699 (899)
...++|+|+....++++++.+.. ...|.++++||+++. ++++++.++...+.+|+||||.....
T Consensus 28 i~~iSD~Hg~~~~l~~~l~~~~~-~~~D~ii~~GDl~~~-----~~~~~l~~l~~~~~~V~GNhD~~~~~ 91 (190)
T 1s3l_A 28 IGIMSDTHDHLPNIRKAIEIFND-ENVETVIHCGDFVSL-----FVIKEFENLNANIIATYGNNDGERCK 91 (190)
T ss_dssp EEEECCCTTCHHHHHHHHHHHHH-SCCSEEEECSCCCST-----HHHHHGGGCSSEEEEECCTTCCCHHH
T ss_pred EEEEeeCCCCHHHHHHHHHHHhh-cCCCEEEECCCCCCH-----HHHHHHHhcCCCEEEEeCCCcchHHH
Confidence 35689999999999999988764 345899999999974 57888876654689999999987653
No 192
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.55 E-value=6.7e-07 Score=97.71 Aligned_cols=163 Identities=16% Similarity=0.233 Sum_probs=97.6
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhc--------------------------------
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA-------------------------------- 61 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~-------------------------------- 61 (899)
..++++||+|+|||+|++.+++.. + .+.+++.....
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 99 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER----------P--GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISL 99 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS----------S--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCC
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc----------C--cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEE
Confidence 578999999999999999999875 2 44555433210
Q ss_pred ---Cccc---CchHHHHHHHHHHHHHhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcC-CceEEEEecChhHH-
Q psy2887 62 ---GTKY---RGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-GELHCIGATTLNEY- 133 (899)
Q Consensus 62 ---~~~~---~g~~~~~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~-~~v~vI~at~~~~~- 133 (899)
+... .......+ ..+.......+|.+|+|||++.+.... .....+....|...++. ..+.+|.+++...+
T Consensus 100 ~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~vlvlDe~~~~~~~~-~~~~~~~~~~L~~~~~~~~~~~~il~g~~~~~l 177 (350)
T 2qen_A 100 NLKFLTLEPRKLSLREVF-RELNDLGEELGEFIVAFDEAQYLRFYG-SRGGKELLALFAYAYDSLPNLKIILTGSEVGLL 177 (350)
T ss_dssp CCGGGTSCGGGCCHHHHH-HHHHHHHHHHSCEEEEEETGGGGGGBT-TTTTHHHHHHHHHHHHHCTTEEEEEEESSHHHH
T ss_pred EecceeeccccchHHHHH-HHHHHHHhccCCEEEEEeCHHHHhccC-ccchhhHHHHHHHHHHhcCCeEEEEECCcHHHH
Confidence 0000 01112112 222222111238999999999986411 01122444555555543 46777777766542
Q ss_pred HHh---hhcCHHHHhccc-cccccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhh
Q psy2887 134 RQY---IEKDAAFERRFQ-KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRY 194 (899)
Q Consensus 134 ~~~---~~ld~al~~Rf~-~i~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (899)
... ......+..|+. .+.+.+++.++..+++...... .+..++++.+..+...+.|+
T Consensus 178 ~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~----~~~~~~~~~~~~i~~~tgG~ 238 (350)
T 2qen_A 178 HDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFRE----VNLDVPENEIEEAVELLDGI 238 (350)
T ss_dssp HHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHT----TTCCCCHHHHHHHHHHHTTC
T ss_pred HHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhCCC
Confidence 221 122333544554 5899999999999998765543 34567888888888888764
No 193
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.54 E-value=2.3e-07 Score=90.29 Aligned_cols=136 Identities=20% Similarity=0.311 Sum_probs=75.1
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCC
Q psy2887 392 GQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPP 471 (899)
Q Consensus 392 gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 471 (899)
.....+..+...+. ++ |++ .+++|+||||||||++|.++|+.+ ...++.+. +.... +
T Consensus 40 ~~~~f~~~l~~~~~----~i--Pkk--n~ili~GPPGtGKTt~a~ala~~l---~g~i~~fa-----ns~s~--f----- 96 (212)
T 1tue_A 40 EFITFLGALKSFLK----GT--PKK--NCLVFCGPANTGKSYFGMSFIHFI---QGAVISFV-----NSTSH--F----- 96 (212)
T ss_dssp CHHHHHHHHHHHHH----TC--TTC--SEEEEESCGGGCHHHHHHHHHHHH---TCEECCCC-----CSSSC--G-----
T ss_pred CHHHHHHHHHHHHh----cC--Ccc--cEEEEECCCCCCHHHHHHHHHHHh---CCCeeeEE-----eccch--h-----
Confidence 44445555555544 21 222 269999999999999999999998 33332211 10000 0
Q ss_pred CcccccccchhhHHHHhCCCEEEEEccccccCHHH-HHHHHHhhcCCcee-cCC-CceEecCCeEEEEecCCChhhhhhh
Q psy2887 472 GYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDV-FNILLQILDDGRLT-DNR-GRTINFRNTIIVMTSNLGSDKIKEM 548 (899)
Q Consensus 472 ~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~-~~~Ll~~le~g~~~-~~~-g~~~~~~~~~iI~tsn~~~~~~~~~ 548 (899)
+ + ..+ ....+++|||++...-.. ...+..+|+...+. |.. ...+.....-+|+|||.....-
T Consensus 97 -~--------l-~~l--~~~kIiiLDEad~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~--- 161 (212)
T 1tue_A 97 -W--------L-EPL--TDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKD--- 161 (212)
T ss_dssp -G--------G-GGG--TTCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSS---
T ss_pred -h--------h-ccc--CCCCEEEEECCCchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccc---
Confidence 0 0 001 123499999998543333 34567777753222 111 1122233456899999865421
Q ss_pred hcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEecC
Q psy2887 549 EKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRY 584 (899)
Q Consensus 549 ~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~ 584 (899)
.. -+.|.+|+ ..+.|+-
T Consensus 162 -----------------~~-~~~L~SRi-~~f~F~~ 178 (212)
T 1tue_A 162 -----------------NR-WPYLESRI-TVFEFPN 178 (212)
T ss_dssp -----------------SS-CHHHHTSC-EEEECCS
T ss_pred -----------------cc-hhhhhhhE-EEEEcCC
Confidence 11 14588999 6777773
No 194
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.53 E-value=5.2e-07 Score=92.34 Aligned_cols=133 Identities=11% Similarity=0.188 Sum_probs=77.8
Q ss_pred eEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCC-EEEEEc
Q psy2887 419 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPY-SLILLD 497 (899)
Q Consensus 419 ~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~-~vl~lD 497 (899)
.+++|+||||||||++|++||+.+ .. .-.++.+ +. . . .+..... .|++.|
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~---~l-~G~vn~~---~~----~-------f-----------~l~~~~~k~i~l~E 155 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTV---PF-YGCVNWT---NE----N-------F-----------PFNDCVDKMVIWWE 155 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS---SC-EEECCTT---CS----S-------C-----------TTGGGSSCSEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhh---cc-cceeecc---cc----c-------c-----------ccccccccEEEEec
Confidence 369999999999999999999975 11 1111211 10 0 0 0111122 355656
Q ss_pred cccccCHHHHHHHHHhhcCCceec-CC-CceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhc
Q psy2887 498 EIEKANSDVFNILLQILDDGRLTD-NR-GRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINR 575 (899)
Q Consensus 498 Eid~~~~~~~~~Ll~~le~g~~~~-~~-g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R 575 (899)
|.. +..+.++.+-.+++.+.+.- .. ........+-+|+|||............ .....+.|.+|
T Consensus 156 e~~-~~~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~-------------s~~~~~~L~sR 221 (267)
T 1u0j_A 156 EGK-MTAKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNST-------------TFEHQQPLQDR 221 (267)
T ss_dssp SCC-EETTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEE-------------ECTTHHHHHTT
T ss_pred ccc-chhHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCcc-------------chhhhHHHhhh
Confidence 555 44566677888887554442 21 1123446677899999855432110000 01123458899
Q ss_pred cCeEEEec--------CCCHHHHHHHHH
Q psy2887 576 IDDIIVFR--------YLNRKNILSIAN 595 (899)
Q Consensus 576 ~~~~i~f~--------~l~~~~~~~i~~ 595 (899)
+ .++.|. +++.++....+.
T Consensus 222 ~-~~f~F~~~~p~~~~~lt~~~~~~f~~ 248 (267)
T 1u0j_A 222 M-FKFELTRRLDHDFGKVTKQEVKDFFR 248 (267)
T ss_dssp E-EEEECCSCCCTTSCCCCHHHHHHHHH
T ss_pred E-EEEECCCcCCcccCCCCHHHHHHHHH
Confidence 9 899998 899999888765
No 195
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.51 E-value=8.8e-07 Score=96.74 Aligned_cols=183 Identities=13% Similarity=0.183 Sum_probs=108.6
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccc------ccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI------EKH 461 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~------~~~ 461 (899)
..++|.+..++.|...+... ..++++||+|+|||++++.+++.. + .+.+++.... ...
T Consensus 12 ~~~~gR~~el~~L~~~l~~~-----------~~v~i~G~~G~GKT~Ll~~~~~~~---~--~~~~~~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY-----------PLTLLLGIRRVGKSSLLRAFLNER---P--GILIDCRELYAERGHITRE 75 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC-----------SEEEEECCTTSSHHHHHHHHHHHS---S--EEEEEHHHHHHTTTCBCHH
T ss_pred HhcCChHHHHHHHHHHHhcC-----------CeEEEECCCcCCHHHHHHHHHHHc---C--cEEEEeecccccccCCCHH
Confidence 56789999999998887642 169999999999999999999876 3 6677765432 110
Q ss_pred c----hhhccCC-----------------CCCcccccccchhhHHHH----hCCCEEEEEccccccCH-------HHHHH
Q psy2887 462 S----ISRLIGA-----------------PPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANS-------DVFNI 509 (899)
Q Consensus 462 ~----~~~l~g~-----------------~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~~~~-------~~~~~ 509 (899)
. +...++. .... ....-..+...+. ...+.+|+|||++.+.. .....
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEP-RKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCG-GGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeecc-ccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 0 0111110 0000 0011122333332 22368999999998764 56666
Q ss_pred HHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHh-hcCChhHhhccCeEEEecCCCHH
Q psy2887 510 LLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVK-IYFRPEFINRIDDIIVFRYLNRK 588 (899)
Q Consensus 510 Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~l~~R~~~~i~f~~l~~~ 588 (899)
|..+++. ..++.+|+|+..... +.+ .+. ......+.+|....+.+.|++.+
T Consensus 155 L~~~~~~------------~~~~~~il~g~~~~~-l~~---------------~l~~~~~~~~l~~~~~~~i~l~pl~~~ 206 (350)
T 2qen_A 155 FAYAYDS------------LPNLKIILTGSEVGL-LHD---------------FLKITDYESPLYGRIAGEVLVKPFDKD 206 (350)
T ss_dssp HHHHHHH------------CTTEEEEEEESSHHH-HHH---------------HHCTTCTTSTTTTCCCEEEECCCCCHH
T ss_pred HHHHHHh------------cCCeEEEEECCcHHH-HHH---------------HHhhcCCCCccccCccceeeCCCCCHH
Confidence 6666654 136677777653210 111 000 11223466777679999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcceeecHHHHHHHHh
Q psy2887 589 NILSIANIQLNILKNKLLKMNMDLKISKAALKKISN 624 (899)
Q Consensus 589 ~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 624 (899)
+..+++...+ ...+ ..+++++...+..
T Consensus 207 e~~~~l~~~~-------~~~~--~~~~~~~~~~i~~ 233 (350)
T 2qen_A 207 TSVEFLKRGF-------REVN--LDVPENEIEEAVE 233 (350)
T ss_dssp HHHHHHHHHH-------HTTT--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHH-------HHcC--CCCCHHHHHHHHH
Confidence 9998876544 2223 3456666666654
No 196
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.50 E-value=2.5e-07 Score=101.26 Aligned_cols=156 Identities=20% Similarity=0.135 Sum_probs=85.4
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHH-HHHHHcCCCCCccCCCeEEEEehh----hhhcCccc-CchHHHHHHHHHHHHHhcC
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGL-AQRIINGEVPNSLLSKKILLLDIA----LLLAGTKY-RGEFEDRLKKILKEISNNQ 84 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~l-a~~l~~~~~p~~l~~~~~~~~~~~----~l~~~~~~-~g~~~~~l~~~~~~~~~~~ 84 (899)
+...|+||.|+||| ||++|+++ ++.+ ....+..... .+...... .| +.-. ...+..|
T Consensus 237 rgdihVLL~G~PGt-KS~Lar~i~~~i~----------pR~~ft~g~~ss~~gLt~s~r~~tG-~~~~-~G~l~LA---- 299 (506)
T 3f8t_A 237 SERLHVLLAGYPVV-CSEILHHVLDHLA----------PRGVYVDLRRTELTDLTAVLKEDRG-WALR-AGAAVLA---- 299 (506)
T ss_dssp GGCCCEEEESCHHH-HHHHHHHHHHHTC----------SSEEEEEGGGCCHHHHSEEEEESSS-EEEE-ECHHHHT----
T ss_pred CCceeEEEECCCCh-HHHHHHHHHHHhC----------CCeEEecCCCCCccCceEEEEcCCC-cccC-CCeeEEc----
Confidence 44559999999999 99999999 6644 1122221110 11100000 01 0000 0011111
Q ss_pred CCEEEEEccccccccCCCCCchhhHHHhhhhhhcCC-----------ceEEEEecChhHHH------HhhhcCHHHHhcc
Q psy2887 85 KDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-----------ELHCIGATTLNEYR------QYIEKDAAFERRF 147 (899)
Q Consensus 85 ~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~-----------~v~vI~at~~~~~~------~~~~ld~al~~Rf 147 (899)
...|||+||++.+.+ .....|++.|+.+ .+.+|+|+|+.+.. ..+.+.+++++||
T Consensus 300 dgGvl~lDEIn~~~~--------~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRF 371 (506)
T 3f8t_A 300 DGGILAVDHLEGAPE--------PHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLSHF 371 (506)
T ss_dssp TTSEEEEECCTTCCH--------HHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHTTC
T ss_pred CCCeeehHhhhhCCH--------HHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhhhe
Confidence 134999999999854 5566788888744 47799999987610 1248999999999
Q ss_pred cc--ccccCCCHHHHH---------HHHHhhhhhhh-cccCCCCCHHHHHHHHhhh
Q psy2887 148 QK--ILVEEPDIEETI---------SILRGLQKKYE-VHHGVEITDPAIVAASELS 191 (899)
Q Consensus 148 ~~--i~l~~p~~~e~~---------~il~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 191 (899)
+. +.++.|+.++-. +.++.+..... ....+.+++++.++++++.
T Consensus 372 DLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y 427 (506)
T 3f8t_A 372 DLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWY 427 (506)
T ss_dssp SEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHH
T ss_pred eeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHH
Confidence 85 557777654421 12222222211 1235667787777776553
No 197
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=98.47 E-value=4.3e-07 Score=92.58 Aligned_cols=67 Identities=15% Similarity=0.216 Sum_probs=49.9
Q ss_pred cccccccccHHHHHHHHHHhhccCCccceeeccccCCCCceEe---hhHHHHHhcCCccEEEccCChHhHH
Q psy2887 631 YGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSL---DTLRMVYSMRNYAKIVLGNHEIHLL 698 (899)
Q Consensus 631 ~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~---~~~~~l~~~~~~~~~v~GNHe~~~l 698 (899)
..++|+|+....++++++.+.-. ..|.++++||++++++... ++++.+.+....+.+|+||||....
T Consensus 9 ~~iSD~H~~~~~~~~~~~~~~~~-~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~ 78 (228)
T 1uf3_A 9 LATSNPMGDLEALEKFVKLAPDT-GADAIALIGNLMPKAAKSRDYAAFFRILSEAHLPTAYVPGPQDAPIW 78 (228)
T ss_dssp EEEECCTTCHHHHHHHHTHHHHH-TCSEEEEESCSSCTTCCHHHHHHHHHHHGGGCSCEEEECCTTSCSHH
T ss_pred EEEeeccCCHHHHHHHHHHHhhc-CCCEEEECCCCCCCCCCHHHHHHHHHHHHhcCCcEEEECCCCCchhH
Confidence 56899999999888888766533 4588999999999985443 3455554443358999999997654
No 198
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.43 E-value=2.4e-07 Score=92.67 Aligned_cols=71 Identities=21% Similarity=0.312 Sum_probs=45.8
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcc--c-CchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTK--Y-RGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~--~-~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
.+++|+||||||||++|+++++.+... +.+++.+++..+...-. + .+. +..++..+.. +.+|+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~---~~~li 120 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR-------NVSSLIVYVPELFRELKHSLQDQT----MNEKLDYIKK---VPVLM 120 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT-------TCCEEEEEHHHHHHHHHHC---CC----CHHHHHHHHH---SSEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEEhHHHHHHHHHHhccch----HHHHHHHhcC---CCEEE
Confidence 689999999999999999999988543 45666677655431100 0 011 1233333332 33999
Q ss_pred Eccccccc
Q psy2887 91 IDELHTMI 98 (899)
Q Consensus 91 iDEi~~l~ 98 (899)
|||++...
T Consensus 121 lDei~~~~ 128 (202)
T 2w58_A 121 LDDLGAEA 128 (202)
T ss_dssp EEEECCC-
T ss_pred EcCCCCCc
Confidence 99997654
No 199
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.43 E-value=3.2e-07 Score=90.77 Aligned_cols=130 Identities=14% Similarity=0.098 Sum_probs=71.7
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCC-CeEEEEehhhhhcCcc-----------cCch--HHHHHHHHHHHH
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLS-KKILLLDIALLLAGTK-----------YRGE--FEDRLKKILKEI 80 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~-~~~~~~~~~~l~~~~~-----------~~g~--~~~~l~~~~~~~ 80 (899)
-.|++|+||||||++|..++.....-. |. -.+ .+++..++..+..+.. ..++ ....+...+..+
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~-~~-~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 84 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFK-PD-ENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP 84 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGS-CC-TTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhc-cc-ccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc
Confidence 468999999999999988765432000 00 013 4555444443321110 0010 011222221111
Q ss_pred HhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhh---cCCceEEEEecChhHHHHhhhcCHHHHhcccc-ccccCCC
Q psy2887 81 SNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL---SRGELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPD 156 (899)
Q Consensus 81 ~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l---~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~-i~l~~p~ 156 (899)
.+.++||+|||++.+++.+... .+... ++..+ ....+.+|.+|+++. .++.++++|+.. +.+..|.
T Consensus 85 --~~~~~vliIDEAq~l~~~~~~~--~e~~r-ll~~l~~~r~~~~~iil~tq~~~-----~l~~~lr~ri~~~~~l~~~~ 154 (199)
T 2r2a_A 85 --ENIGSIVIVDEAQDVWPARSAG--SKIPE-NVQWLNTHRHQGIDIFVLTQGPK-----LLDQNLRTLVRKHYHIASNK 154 (199)
T ss_dssp --GGTTCEEEETTGGGTSBCCCTT--CCCCH-HHHGGGGTTTTTCEEEEEESCGG-----GBCHHHHTTEEEEEEEEECS
T ss_pred --ccCceEEEEEChhhhccCcccc--chhHH-HHHHHHhcCcCCeEEEEECCCHH-----HHhHHHHHHhheEEEEcCcc
Confidence 2347799999999997644211 11111 22222 234567888888877 899999999985 7777654
No 200
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.42 E-value=1e-06 Score=96.41 Aligned_cols=161 Identities=15% Similarity=0.188 Sum_probs=93.2
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhh-----c---------------------------
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLL-----A--------------------------- 61 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~-----~--------------------------- 61 (899)
+.++++||+|+|||+|++.+++.+ ....+.+++.... .
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~ 100 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL----------NLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALK 100 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH----------TCCEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhc
Confidence 578999999999999999999887 2334555554320 0
Q ss_pred ---CcccCc---h------HHHHHHHHHHHHHhcC-CCEEEEEccccccccCCCCCchhhHHHhhhhhhcC-CceEEEEe
Q psy2887 62 ---GTKYRG---E------FEDRLKKILKEISNNQ-KDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-GELHCIGA 127 (899)
Q Consensus 62 ---~~~~~g---~------~~~~l~~~~~~~~~~~-~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~-~~v~vI~a 127 (899)
+-...+ . ....+..++..+.... +|.+|+|||++.+.... +.+....|....+. ..+.+|.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~----~~~~~~~l~~~~~~~~~~~~i~~ 176 (357)
T 2fna_A 101 NIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR----GVNLLPALAYAYDNLKRIKFIMS 176 (357)
T ss_dssp TSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT----TCCCHHHHHHHHHHCTTEEEEEE
T ss_pred ccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC----chhHHHHHHHHHHcCCCeEEEEE
Confidence 000000 0 0012344554444332 38999999999986521 11233344444432 46777777
Q ss_pred cChhHH-HHh---hhcCHHHHhcc-ccccccCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHhhhhhh
Q psy2887 128 TTLNEY-RQY---IEKDAAFERRF-QKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRY 194 (899)
Q Consensus 128 t~~~~~-~~~---~~ld~al~~Rf-~~i~l~~p~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (899)
++.... ... ......+..|+ ..+.+++++.++..+++...+... +...++. ..++..+.|+
T Consensus 177 g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~----~~~~~~~--~~i~~~t~G~ 242 (357)
T 2fna_A 177 GSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEA----DIDFKDY--EVVYEKIGGI 242 (357)
T ss_dssp ESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHH----TCCCCCH--HHHHHHHCSC
T ss_pred cCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHc----CCCCCcH--HHHHHHhCCC
Confidence 776542 222 12223355565 468999999999999998765431 2333332 5566666553
No 201
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.39 E-value=9.6e-07 Score=96.27 Aligned_cols=169 Identities=9% Similarity=-0.004 Sum_probs=115.4
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHH---hcCCCE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDI 87 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~---~~~~~~ 87 (899)
+..+.+||+||+|+||++.++.+++.+...+.. .+.++.++ +. . .++++++.+. -.++.-
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~------~~---~----~~~~l~~~~~~~plf~~~k 78 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFE----EHHTFSID------PN---T----DWNAIFSLCQAMSLFASRQ 78 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCC----EEEEEECC------TT---C----CHHHHHHHHHHHHHCCSCE
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCC----eeEEEEec------CC---C----CHHHHHHHhcCcCCccCCe
Confidence 455678999999999999999999987532100 11122221 11 1 2445554443 134467
Q ss_pred EEEEccccc-cccCCCCCchhhHHHhhhhhhcC--CceEEEEecChhH-HHHhhhcCHHHHhccccccccCCCHHHHHHH
Q psy2887 88 IIFIDELHT-MIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNE-YRQYIEKDAAFERRFQKILVEEPDIEETISI 163 (899)
Q Consensus 88 iL~iDEi~~-l~~~~~~~~~~~~~~~l~~~l~~--~~v~vI~at~~~~-~~~~~~ld~al~~Rf~~i~l~~p~~~e~~~i 163 (899)
|++|||+|. +.. ...+.|+.+++. ..+++|.+++..+ -.+...+-+++.+|+..+.+.+++..+...+
T Consensus 79 vvii~~~~~kl~~--------~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~ 150 (343)
T 1jr3_D 79 TLLLLLPENGPNA--------AINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRW 150 (343)
T ss_dssp EEEEECCSSCCCT--------THHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHH
T ss_pred EEEEECCCCCCCh--------HHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHH
Confidence 999999998 643 466788888875 3455555554321 1111245688999999999999999999999
Q ss_pred HHhhhhhhhcccCCCCCHHHHHHHHhhhhhhcccCCCchhHHHHHHHHHHh
Q psy2887 164 LRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 214 (899)
Q Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ll~~a~~~ 214 (899)
++..+++ .++.++++++..+++.+++.+. .+...++..+..
T Consensus 151 l~~~~~~----~g~~i~~~a~~~l~~~~~gdl~------~~~~elekl~l~ 191 (343)
T 1jr3_D 151 VAARAKQ----LNLELDDAANQVLCYCYEGNLL------ALAQALERLSLL 191 (343)
T ss_dssp HHHHHHH----TTCEECHHHHHHHHHSSTTCHH------HHHHHHHHHHHH
T ss_pred HHHHHHH----cCCCCCHHHHHHHHHHhchHHH------HHHHHHHHHHHh
Confidence 9887765 6788999999999999877554 666777766554
No 202
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.39 E-value=1.7e-07 Score=91.21 Aligned_cols=108 Identities=12% Similarity=0.104 Sum_probs=63.5
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEEc
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFID 92 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~iD 92 (899)
++++||+||||||||++|.++|+.+ ...++...- +.. .+. +..+. ...|++||
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l----------~g~i~~fan------s~s--~f~------l~~l~---~~kIiiLD 110 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFI----------QGAVISFVN------STS--HFW------LEPLT---DTKVAMLD 110 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHH----------TCEECCCCC------SSS--CGG------GGGGT---TCSSEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHh----------CCCeeeEEe------ccc--hhh------hcccC---CCCEEEEE
Confidence 5679999999999999999999988 333332110 000 000 11111 12389999
Q ss_pred cccccccCCCCCchhhHHHhhhhhhcCC---------------ceEEEEecChhHHHHhhhcCHHHHhccccccccCCC
Q psy2887 93 ELHTMIGTGKVEGSIDAGNMLKPELSRG---------------ELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPD 156 (899)
Q Consensus 93 Ei~~l~~~~~~~~~~~~~~~l~~~l~~~---------------~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~l~~p~ 156 (899)
|++.-.. ..+...+...++.. ...+|.|||..-.. ...-+.|.+|+..+.|+.|-
T Consensus 111 Ead~~~~-------~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~--~~~~~~L~SRi~~f~F~~~~ 180 (212)
T 1tue_A 111 DATTTCW-------TYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAK--DNRWPYLESRITVFEFPNAF 180 (212)
T ss_dssp EECHHHH-------HHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTS--SSSCHHHHTSCEEEECCSCC
T ss_pred CCCchhH-------HHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCccc--ccchhhhhhhEEEEEcCCCC
Confidence 9984321 12233455554332 34678888874311 13346899999877777553
No 203
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.35 E-value=2.1e-06 Score=93.88 Aligned_cols=167 Identities=14% Similarity=0.194 Sum_probs=99.5
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccc-----ccccc
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF-----IEKHS 462 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~-----~~~~~ 462 (899)
..++|.+..++.|.. +.. ..++++||+|+|||++++.+++.+ ...++.+++... .+...
T Consensus 13 ~~~~gR~~el~~L~~-l~~------------~~v~i~G~~G~GKT~L~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 76 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA------------PITLVLGLRRTGKSSIIKIGINEL---NLPYIYLDLRKFEERNYISYKD 76 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS------------SEEEEEESTTSSHHHHHHHHHHHH---TCCEEEEEGGGGTTCSCCCHHH
T ss_pred HHhcChHHHHHHHHH-hcC------------CcEEEECCCCCCHHHHHHHHHHhc---CCCEEEEEchhhccccCCCHHH
Confidence 567899888888776 532 169999999999999999999987 445677777653 11000
Q ss_pred h----hh--------------ccCCCCC----ccc---------ccccchhhHHHHhC--CCEEEEEccccccCH----H
Q psy2887 463 I----SR--------------LIGAPPG----YIG---------YEEGGYLTEIVRRK--PYSLILLDEIEKANS----D 505 (899)
Q Consensus 463 ~----~~--------------l~g~~~~----~~g---------~~~~~~l~~~~~~~--~~~vl~lDEid~~~~----~ 505 (899)
. .. +++...+ ..+ ...-..+...+... .+.+|+|||++.+.. .
T Consensus 77 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~ 156 (357)
T 2fna_A 77 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVN 156 (357)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchh
Confidence 0 00 1111000 000 01112344445443 367999999998753 4
Q ss_pred HHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHh-hcCChhHhhccCeEEEecC
Q psy2887 506 VFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVK-IYFRPEFINRIDDIIVFRY 584 (899)
Q Consensus 506 ~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~l~~R~~~~i~f~~ 584 (899)
....|..+++. ..+..+|+|++.... +.. .+. ......+.+|+...+.+.|
T Consensus 157 ~~~~l~~~~~~------------~~~~~~i~~g~~~~~-l~~---------------~l~~~~~~~~l~~r~~~~i~l~~ 208 (357)
T 2fna_A 157 LLPALAYAYDN------------LKRIKFIMSGSEMGL-LYD---------------YLRVEDPESPLFGRAFSTVELKP 208 (357)
T ss_dssp CHHHHHHHHHH------------CTTEEEEEEESSHHH-HHH---------------HTTTTCTTSTTTTCCCEEEEECC
T ss_pred HHHHHHHHHHc------------CCCeEEEEEcCchHH-HHH---------------HHhccCCCCccccCccceeecCC
Confidence 55555555553 135667777764210 110 000 1122346677767999999
Q ss_pred CCHHHHHHHHHHHH
Q psy2887 585 LNRKNILSIANIQL 598 (899)
Q Consensus 585 l~~~~~~~i~~~~l 598 (899)
++.++..+++...+
T Consensus 209 l~~~e~~~~l~~~~ 222 (357)
T 2fna_A 209 FSREEAIEFLRRGF 222 (357)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999887655
No 204
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7
Probab=98.35 E-value=3.1e-07 Score=92.65 Aligned_cols=89 Identities=11% Similarity=0.091 Sum_probs=58.5
Q ss_pred cccccccccHHH--HHHHHHHhhccCCccceeeccccCCCCceEehhHHHHHhcCCccEEEccCChHhHHhHhhhcccCc
Q psy2887 631 YGARDVHGCKKS--LSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVLININKKS 708 (899)
Q Consensus 631 ~~~~di~~~~~~--l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~~~~l~~~~~~~~~v~GNHe~~~l~~~~~~~~~~ 708 (899)
..++|+|+.... +.+.+.++--....|.++++||+++ .++++++.++...+.+|+||||.......
T Consensus 29 ~~iSD~H~~~~~~~l~~~l~~~~~~~~~D~vi~~GDl~~-----~~~l~~l~~~~~~v~~V~GNHD~~~~~~~------- 96 (215)
T 2a22_A 29 LLIGDLKIPYGAKELPSNFRELLATDKINYVLCTGNVCS-----QEYVEMLKNITKNVYIVSGDLDSAIFNPD------- 96 (215)
T ss_dssp EEECCCCTTTTCSSCCGGGHHHHHCTTCCEEEECSCCCC-----HHHHHHHHHHCSCEEECCCTTCCSCCBCC-------
T ss_pred EEEecCCCCCChHHHHHHHHHHHhcCCCCEEEECCCCCC-----HHHHHHHHHcCCCEEEecCCCcCcccccC-------
Confidence 567999976421 2222222211345689999999997 47888888776568999999997654310
Q ss_pred hhchHHHhhCCcChHHHHHHHhcCCceEE--eC--CEEEEeccc
Q psy2887 709 KLDTFDDILDAPDKKKLVSWLRTQPLAIY--YK--KYLMIHAGV 748 (899)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~l~~lp~~~~--~~--~~~~vHAg~ 748 (899)
.+|+..+|.... .+ +++++||..
T Consensus 97 -----------------~~~~~~lp~~~~~~~~~~~i~l~Hg~~ 123 (215)
T 2a22_A 97 -----------------PESNGVFPEYVVVQIGEFKIGLMHGNQ 123 (215)
T ss_dssp -----------------GGGTBCCCSEEEEEETTEEEEEECSTT
T ss_pred -----------------hhhHhhCCceEEEecCCeEEEEEcCCc
Confidence 036677786543 33 689999864
No 205
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.34 E-value=1.5e-07 Score=92.28 Aligned_cols=74 Identities=20% Similarity=0.360 Sum_probs=43.7
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHH-HHHHHHHHHHhcCCCEEEEE
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFED-RLKKILKEISNNQKDIIIFI 91 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~-~l~~~~~~~~~~~~~~iL~i 91 (899)
+.+++|+||||||||||++++++.+.... +..++.++...+... ....... ....++..+. .+.+|+|
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~------g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~llil 106 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKK------GIRGYFFDTKDLIFR--LKHLMDEGKDTKFLKTVL---NSPVLVL 106 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHS------CCCCCEEEHHHHHHH--HHHHHHHTCCSHHHHHHH---TCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHc------CCeEEEEEHHHHHHH--HHHHhcCchHHHHHHHhc---CCCEEEE
Confidence 56899999999999999999999885211 334444555444310 0000000 0012223332 3669999
Q ss_pred cccccc
Q psy2887 92 DELHTM 97 (899)
Q Consensus 92 DEi~~l 97 (899)
||++..
T Consensus 107 DE~~~~ 112 (180)
T 3ec2_A 107 DDLGSE 112 (180)
T ss_dssp ETCSSS
T ss_pred eCCCCC
Confidence 999854
No 206
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=98.28 E-value=5.8e-07 Score=93.79 Aligned_cols=68 Identities=13% Similarity=0.142 Sum_probs=49.5
Q ss_pred cccccccccHHHHHHHHHHhhccCCccceeeccccCCCCceE-----------------------------ehhHHHHHh
Q psy2887 631 YGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQS-----------------------------LDTLRMVYS 681 (899)
Q Consensus 631 ~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~-----------------------------~~~~~~l~~ 681 (899)
..++|+|+....+.++++.+... ..|.++++||++++++.+ ..+++.+.+
T Consensus 9 ~~iSDlH~~~~~~~~~l~~~~~~-~~D~vi~~GDl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~ 87 (260)
T 2yvt_A 9 LAIKNFKERFDLLPKLKGVIAEK-QPDILVVVGNILKNEALEKEYERAHLARREPNRKVIHENEHYIIETLDKFFREIGE 87 (260)
T ss_dssp EEEECCTTCGGGHHHHHHHHHHH-CCSEEEEESCCCCCHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEeecCCChHHHHHHHHHHHhc-CCCEEEECCCCCCccCcchhhhhhhhhhcccchhhhhHHHHHHHHHHHHHHHHHHh
Confidence 55899999998899988877543 458899999999999752 223333333
Q ss_pred cCCccEEEccCChHhHHh
Q psy2887 682 MRNYAKIVLGNHEIHLLD 699 (899)
Q Consensus 682 ~~~~~~~v~GNHe~~~l~ 699 (899)
....+.+|+||||.....
T Consensus 88 ~~~pv~~v~GNHD~~~~~ 105 (260)
T 2yvt_A 88 LGVKTFVVPGKNDAPLKI 105 (260)
T ss_dssp TCSEEEEECCTTSCCHHH
T ss_pred cCCcEEEEcCCCCchhhh
Confidence 233478999999987644
No 207
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.27 E-value=4.3e-07 Score=96.93 Aligned_cols=72 Identities=17% Similarity=0.327 Sum_probs=45.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHH-cCCCCCccCCCeEEEEehhhhhc---CcccCchHHHHHHHHHHHHHhcCCCEE
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRII-NGEVPNSLLSKKILLLDIALLLA---GTKYRGEFEDRLKKILKEISNNQKDII 88 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~-~~~~p~~l~~~~~~~~~~~~l~~---~~~~~g~~~~~l~~~~~~~~~~~~~~i 88 (899)
..+++|+||||||||+||+++|+.+. .. +.++..+.+..+.. .....+ .+...+..+.. ..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~-------g~~v~~~~~~~l~~~l~~~~~~~----~~~~~~~~~~~---~~l 217 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKK-------GVSTTLLHFPSFAIDVKNAISNG----SVKEEIDAVKN---VPV 217 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHS-------CCCEEEEEHHHHHHHHHCCCC--------CCTTHHHHT---SSE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhc-------CCcEEEEEHHHHHHHHHHHhccc----hHHHHHHHhcC---CCE
Confidence 57899999999999999999999886 43 45666676654431 000011 12223333332 339
Q ss_pred EEEccccccc
Q psy2887 89 IFIDELHTMI 98 (899)
Q Consensus 89 L~iDEi~~l~ 98 (899)
|||||++...
T Consensus 218 LiiDdig~~~ 227 (308)
T 2qgz_A 218 LILDDIGAEQ 227 (308)
T ss_dssp EEEETCCC--
T ss_pred EEEcCCCCCC
Confidence 9999997653
No 208
>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae} SCOP: d.159.1.7
Probab=98.26 E-value=1.9e-06 Score=83.94 Aligned_cols=57 Identities=18% Similarity=0.141 Sum_probs=43.2
Q ss_pred ccccccccccHHHHHHHHHHhhccCCccceeeccccCCCCceEehhHHHHHhcCCccEEEccCChHhH
Q psy2887 630 IYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHL 697 (899)
Q Consensus 630 ~~~~~di~~~~~~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~~~~l~~~~~~~~~v~GNHe~~~ 697 (899)
...++|+|+..+.++++++.+.- ..|.++++||+. .++++.+. ..+.+|+||||.+.
T Consensus 9 i~~isD~H~~~~~~~~~~~~~~~--~~d~i~~~GD~~------~~~l~~l~---~~~~~v~GNhD~~~ 65 (176)
T 3ck2_A 9 IIVMSDSHGDSLIVEEVRDRYVG--KVDAVFHNGDSE------LRPDSPLW---EGIRVVKGNMDFYA 65 (176)
T ss_dssp EEEECCCTTCHHHHHHHHHHHTT--TSSEEEECSCCC------SCTTCGGG---TTEEECCCTTCCST
T ss_pred EEEEecCCCCHHHHHHHHHHhhc--CCCEEEECCCCc------hHHHHhhh---CCeEEecCcccchh
Confidence 35689999999999999988753 568999999972 23444443 25899999999653
No 209
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.20 E-value=4e-06 Score=81.56 Aligned_cols=23 Identities=43% Similarity=0.907 Sum_probs=21.5
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l 37 (899)
++.|+||+|+|||||++.+++.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999987
No 210
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.16 E-value=1.4e-06 Score=91.30 Aligned_cols=104 Identities=21% Similarity=0.314 Sum_probs=57.9
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEEccc
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDEL 94 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi 94 (899)
.++|+||||||||+||..+|... .. .+.++........ ..+..+.+..+..+.+.+.+. + +|+||++
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~~-G~-------~VlyIs~~~eE~v--~~~~~~le~~l~~i~~~l~~~--~-LLVIDsI 191 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEAL-GG-------KDKYATVRFGEPL--SGYNTDFNVFVDDIARAMLQH--R-VIVIDSL 191 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHHH-HT-------TSCCEEEEBSCSS--TTCBCCHHHHHHHHHHHHHHC--S-EEEEECC
T ss_pred EEEEEcCCCCCHHHHHHHHHHhC-CC-------CEEEEEecchhhh--hhhhcCHHHHHHHHHHHHhhC--C-EEEEecc
Confidence 46999999999999999999862 11 1223333111111 111244555566666666543 3 9999999
Q ss_pred cccccCCCCC---c--hh---hHHHhhhhhhcCCceEEEEecChh
Q psy2887 95 HTMIGTGKVE---G--SI---DAGNMLKPELSRGELHCIGATTLN 131 (899)
Q Consensus 95 ~~l~~~~~~~---~--~~---~~~~~l~~~l~~~~v~vI~at~~~ 131 (899)
+.+....... + .+ .....|...+.+.++.+|+++|+.
T Consensus 192 ~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp~ 236 (331)
T 2vhj_A 192 KNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPT 236 (331)
T ss_dssp TTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCCS
T ss_pred cccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCCc
Confidence 9996543220 0 11 222333333444567788888854
No 211
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A 2r17_A
Probab=98.15 E-value=2.8e-06 Score=83.99 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=41.7
Q ss_pred cccccccccHH--HHHHHHHHhhccCCccceeeccccCCCCceEehhHHHHHhcCCccEEEccCChHhH
Q psy2887 631 YGARDVHGCKK--SLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHL 697 (899)
Q Consensus 631 ~~~~di~~~~~--~l~~~l~~~~~~~~~~~li~~GD~~d~g~~~~~~~~~l~~~~~~~~~v~GNHe~~~ 697 (899)
..++|+|+... .+.+.+.++--....|.++++||+++ .++++++.++...+.+|+||||...
T Consensus 14 ~~iSD~H~~~~~~~~~~~l~~~~~~~~~d~ii~~GDl~~-----~~~~~~l~~~~~~~~~v~GNhD~~~ 77 (192)
T 1z2w_A 14 LVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCT-----KESYDYLKTLAGDVHIVRGDFDENL 77 (192)
T ss_dssp EEECCCCBTTTCSSCCHHHHTTCCTTSCSEEEECSCCBS-----HHHHHHHHHHCSEEEECCCTTCCCT
T ss_pred EEEecCCCCccchhHHHHHHHHhccCCCCEEEEcCCCCC-----HHHHHHHHhcCCCEEEEcCCcCccc
Confidence 55799997531 12222222211234689999999997 4678888777655889999999654
No 212
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.10 E-value=7.2e-06 Score=80.25 Aligned_cols=96 Identities=15% Similarity=0.127 Sum_probs=52.6
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccc--ccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF--IEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLD 497 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~--~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lD 497 (899)
.++++||+|+||||++..++..+...+.+++.+....- .....+....|.............+...+. .+..+|+||
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~-~~~dvviID 83 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE-EDTRGVFID 83 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCC-TTEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhc-CCCCEEEEE
Confidence 47899999999999997776666455555554432210 000001111111100111111122222222 245799999
Q ss_pred cccccCHHHHHHHHHhhcC
Q psy2887 498 EIEKANSDVFNILLQILDD 516 (899)
Q Consensus 498 Eid~~~~~~~~~Ll~~le~ 516 (899)
|++.++++.++.|..+.+.
T Consensus 84 E~Q~~~~~~~~~l~~l~~~ 102 (184)
T 2orw_A 84 EVQFFNPSLFEVVKDLLDR 102 (184)
T ss_dssp CGGGSCTTHHHHHHHHHHT
T ss_pred CcccCCHHHHHHHHHHHHC
Confidence 9999988888888777774
No 213
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.10 E-value=1.3e-05 Score=77.95 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=21.6
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACI 442 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l 442 (899)
.+.|.||+|+|||||++.|+..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999988
No 214
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.08 E-value=9.6e-06 Score=80.09 Aligned_cols=130 Identities=13% Similarity=0.089 Sum_probs=73.0
Q ss_pred EEEEecCCCChHHHHHHHHHHHhc-----cCC-CceEEecccccccccchhhccCCC---CCcccccc-cchhhHHH--H
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIF-----NNE-ESIIRIDMSEFIEKHSISRLIGAP---PGYIGYEE-GGYLTEIV--R 487 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~-----~~~-~~~~~~~~~~~~~~~~~~~l~g~~---~~~~g~~~-~~~l~~~~--~ 487 (899)
..|++|+||+|||++|..++.... ..+ .++...++.++...... ..... ....+... ...+.+.+ .
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~--~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 84 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTY--IETDAKKLPKSTDEQLSAHDMYEWIKKP 84 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEE--EECCTTTCSSCCSSCEEGGGHHHHTTSG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccc--cchhhhhccccCcccccHHHHHHHhhcc
Confidence 588999999999999988765543 445 66666666655432110 00000 00011110 12233332 3
Q ss_pred hCCCEEEEEccccccCH---HH--HHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHH
Q psy2887 488 RKPYSLILLDEIEKANS---DV--FNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMN 562 (899)
Q Consensus 488 ~~~~~vl~lDEid~~~~---~~--~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~ 562 (899)
...+.||+|||++.+-+ .. ...++..++..+ ....-||++++. ..
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r----------~~~~~iil~tq~-~~------------------- 134 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHR----------HQGIDIFVLTQG-PK------------------- 134 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTT----------TTTCEEEEEESC-GG-------------------
T ss_pred ccCceEEEEEChhhhccCccccchhHHHHHHHHhcC----------cCCeEEEEECCC-HH-------------------
Confidence 33467999999998822 11 123555555422 123456777775 22
Q ss_pred HHhhcCChhHhhccCeEEEecCC
Q psy2887 563 EVKIYFRPEFINRIDDIIVFRYL 585 (899)
Q Consensus 563 ~l~~~~~~~l~~R~~~~i~f~~l 585 (899)
.+...+.+|++..+.+.+.
T Consensus 135 ----~l~~~lr~ri~~~~~l~~~ 153 (199)
T 2r2a_A 135 ----LLDQNLRTLVRKHYHIASN 153 (199)
T ss_dssp ----GBCHHHHTTEEEEEEEEEC
T ss_pred ----HHhHHHHHHhheEEEEcCc
Confidence 3556688999888888873
No 215
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.06 E-value=1.1e-05 Score=82.59 Aligned_cols=119 Identities=16% Similarity=0.188 Sum_probs=69.1
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEE
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFI 91 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~i 91 (899)
++++++|+||||||||++|.+||+.+ .. .-.++.+ .... .+..+ ....|++.
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~~----------~l-~G~vn~~----~~~f----------~l~~~---~~k~i~l~ 154 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHTV----------PF-YGCVNWT----NENF----------PFNDC---VDKMVIWW 154 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHS----------SC-EEECCTT----CSSC----------TTGGG---SSCSEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhhh----------cc-cceeecc----cccc----------ccccc---cccEEEEe
Confidence 35679999999999999999999875 11 0111110 0110 11111 12336666
Q ss_pred ccccccccCCCCCchhhHHHhhhhhhc--------C-------CceEEEEecChhHHH------HhhhcCHHHHhccccc
Q psy2887 92 DELHTMIGTGKVEGSIDAGNMLKPELS--------R-------GELHCIGATTLNEYR------QYIEKDAAFERRFQKI 150 (899)
Q Consensus 92 DEi~~l~~~~~~~~~~~~~~~l~~~l~--------~-------~~v~vI~at~~~~~~------~~~~ld~al~~Rf~~i 150 (899)
||....- ++.+.++.+++ + ....+|.+||..-.. ......++|.+|+..+
T Consensus 155 Ee~~~~~---------d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~~~f 225 (267)
T 1u0j_A 155 EEGKMTA---------KVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKF 225 (267)
T ss_dssp CSCCEET---------TTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTEEEE
T ss_pred ccccchh---------HHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhhhEEEE
Confidence 6666542 23334455553 1 235677788873311 0014568899999887
Q ss_pred ccc--------CCCHHHHHHHHHhh
Q psy2887 151 LVE--------EPDIEETISILRGL 167 (899)
Q Consensus 151 ~l~--------~p~~~e~~~il~~~ 167 (899)
.|+ +.+.++....++..
T Consensus 226 ~F~~~~p~~~~~lt~~~~~~f~~w~ 250 (267)
T 1u0j_A 226 ELTRRLDHDFGKVTKQEVKDFFRWA 250 (267)
T ss_dssp ECCSCCCTTSCCCCHHHHHHHHHHH
T ss_pred ECCCcCCcccCCCCHHHHHHHHHHH
Confidence 777 67777777777633
No 216
>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8
Probab=97.99 E-value=2.3e-05 Score=77.54 Aligned_cols=55 Identities=24% Similarity=0.348 Sum_probs=41.3
Q ss_pred HHHHHHhhc-cCCccceeeccccCCCCceEehhHHHHHhcCCccEEEccCChHhHH
Q psy2887 644 SILLKKIHK-KSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLL 698 (899)
Q Consensus 644 ~~~l~~~~~-~~~~~~li~~GD~~d~g~~~~~~~~~l~~~~~~~~~v~GNHe~~~l 698 (899)
+++++.+.. ....|.++++||++++|+...++++++.++...+.+|+||||....
T Consensus 31 ~~l~~~~~~~~~~~D~vi~~GDl~~~~~~~~~~~~~l~~l~~~~~~v~GNhD~~~~ 86 (195)
T 1xm7_A 31 IVILTNLLKVLKPEDTLYHLGDFTWHFNDKNEYLRIWKALPGRKILVMGNHDKDKE 86 (195)
T ss_dssp HHHHHHHHTTCCTTCEEEECSCCBSCSCCTTSHHHHHHHSSSEEEEECCTTCCCHH
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCCCchhHHHHHHHHHHCCCCEEEEeCCCCCchh
Confidence 334444432 1356899999999999877778889998876568999999997653
No 217
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.85 E-value=9e-05 Score=73.64 Aligned_cols=153 Identities=16% Similarity=0.162 Sum_probs=84.7
Q ss_pred ceEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCC---CCC---ccccccc-chhhHHHHhCC
Q psy2887 418 YGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGA---PPG---YIGYEEG-GYLTEIVRRKP 490 (899)
Q Consensus 418 ~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~---~~~---~~g~~~~-~~l~~~~~~~~ 490 (899)
..++++.|+|||||||+|-.+|..+...+..+..++............+-|- +.. +.|.... ..+...+.. .
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~~-~ 84 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLKA-A 84 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHHH-C
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHhc-C
Confidence 3479999999999999999999999777877776666442221111111111 111 1111111 234443443 4
Q ss_pred CEEEEEccccccCH------HHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChh-hhhhhhcCcHHHHHHHHHHH
Q psy2887 491 YSLILLDEIEKANS------DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSD-KIKEMEKGDKEIIKLAVMNE 563 (899)
Q Consensus 491 ~~vl~lDEid~~~~------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~-~~~~~~~~~~~~~~~~~~~~ 563 (899)
+.++++||+-..+. ..+..+...++. ..-+|.|+|...- .+.+. ......-.
T Consensus 85 pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~s--------------gidVitT~Nlqh~esl~d~-------v~~itg~~ 143 (228)
T 2r8r_A 85 PSLVLVDELAHTNAPGSRHTKRWQDIQELLAA--------------GIDVYTTVNVQHLESLNDQ-------VRGITGVQ 143 (228)
T ss_dssp CSEEEESCTTCBCCTTCSSSBHHHHHHHHHHT--------------TCEEEEEEEGGGBGGGHHH-------HHHHHSCC
T ss_pred CCEEEEeCCCCCCcccchhHHHHHHHHHHHcC--------------CCCEEEEccccccccHHHH-------HHHHcCCC
Confidence 68999999875421 123333334433 3347788886432 11110 00000012
Q ss_pred HhhcCChhHhhccCeEEEecCCCHHHHHHH
Q psy2887 564 VKIYFRPEFINRIDDIIVFRYLNRKNILSI 593 (899)
Q Consensus 564 l~~~~~~~l~~R~~~~i~f~~l~~~~~~~i 593 (899)
+++.++..++.+.|. |.+-.++++++.+-
T Consensus 144 v~e~vpd~~~~~a~~-v~lvD~~p~~l~~r 172 (228)
T 2r8r_A 144 VRETLPDWVLQEAFD-LVLIDLPPRELLER 172 (228)
T ss_dssp CCSCBCHHHHHTCSE-EEEBCCCHHHHHHH
T ss_pred cCCcCccHHHhhCCe-EEEecCCHHHHHHH
Confidence 345677778888864 67777888875443
No 218
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.84 E-value=2e-05 Score=100.22 Aligned_cols=79 Identities=14% Similarity=0.092 Sum_probs=57.5
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhh----h---cC---cccCch----HHHHHHHHHHH
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALL----L---AG---TKYRGE----FEDRLKKILKE 79 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l----~---~~---~~~~g~----~~~~l~~~~~~ 79 (899)
+.+|++||||||||+||++++.+...+ +.+...++.... . .| +++.++ .|+.++.++..
T Consensus 1083 ~~~l~~G~~g~GKT~la~~~~~~~~~~-------g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ 1155 (1706)
T 3cmw_A 1083 RIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDAL 1155 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhc-------CCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHH
Confidence 348999999999999999999877544 333444444321 1 11 345566 78889888876
Q ss_pred HHhcCCCEEEEEccccccccC
Q psy2887 80 ISNNQKDIIIFIDELHTMIGT 100 (899)
Q Consensus 80 ~~~~~~~~iL~iDEi~~l~~~ 100 (899)
+++ ..|+++|+|+++.|++.
T Consensus 1156 ar~-~~~~~i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1156 ARS-GAVDVIVVDSVAALTPK 1175 (1706)
T ss_dssp HHH-TCCSEEEESCGGGCCCH
T ss_pred HHh-cCCeEEEeCchHhcCcc
Confidence 764 55999999999999987
No 219
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.83 E-value=3.7e-05 Score=80.57 Aligned_cols=70 Identities=14% Similarity=0.250 Sum_probs=41.5
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCccccccc--chhhHHHHhCCCEEEEEc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLD 497 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lD 497 (899)
.++|+||||||||+||..++... +....++.+...+..+. +....+. ..+.+.+...+ +||||
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~~-G~~VlyIs~~~eE~v~~------------~~~~le~~l~~i~~~l~~~~--LLVID 189 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEAL-GGKDKYATVRFGEPLSG------------YNTDFNVFVDDIARAMLQHR--VIVID 189 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHHH-HTTSCCEEEEBSCSSTT------------CBCCHHHHHHHHHHHHHHCS--EEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHhC-CCCEEEEEecchhhhhh------------hhcCHHHHHHHHHHHHhhCC--EEEEe
Confidence 57999999999999999999872 22233555422332111 0000010 22344555544 99999
Q ss_pred cccccCH
Q psy2887 498 EIEKANS 504 (899)
Q Consensus 498 Eid~~~~ 504 (899)
+++.+.+
T Consensus 190 sI~aL~~ 196 (331)
T 2vhj_A 190 SLKNVIG 196 (331)
T ss_dssp CCTTTC-
T ss_pred ccccccc
Confidence 9997754
No 220
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.75 E-value=7.7e-05 Score=74.80 Aligned_cols=96 Identities=11% Similarity=0.057 Sum_probs=59.0
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccccc-ccchhhccCCCCCcccccccchhhHHHHh----CCCEEE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE-KHSISRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLI 494 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~-~~~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl 494 (899)
.++++||+|+||||++..++..+...+.+++.+....-.. ...+..-+|-............+...+.. ..+.+|
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvV 93 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVI 93 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEE
Confidence 5889999999999999999888877777777664332111 11111112321111111222345555554 346899
Q ss_pred EEccccccCHHHHHHHHHhhc
Q psy2887 495 LLDEIEKANSDVFNILLQILD 515 (899)
Q Consensus 495 ~lDEid~~~~~~~~~Ll~~le 515 (899)
+|||++.+.++....+..+.+
T Consensus 94 iIDEaQ~l~~~~ve~l~~L~~ 114 (223)
T 2b8t_A 94 GIDEVQFFDDRICEVANILAE 114 (223)
T ss_dssp EECSGGGSCTHHHHHHHHHHH
T ss_pred EEecCccCcHHHHHHHHHHHh
Confidence 999999998887666655443
No 221
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.58 E-value=2.3e-05 Score=76.58 Aligned_cols=117 Identities=20% Similarity=0.173 Sum_probs=57.5
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehh--hhh--------cCcccCchHHHHHHHHHHHHHhcC
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA--LLL--------AGTKYRGEFEDRLKKILKEISNNQ 84 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~--~l~--------~~~~~~g~~~~~l~~~~~~~~~~~ 84 (899)
-++++||+|+||||++..++..+... +..++.+... .-. .|............++++.+. .
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~-------g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~--~ 75 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLG-------KKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE--E 75 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-------TCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCC--T
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhc--C
Confidence 46789999999999997777665432 2222222110 000 000000000001222332221 2
Q ss_pred CCEEEEEccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHH-HhhhcCHHHHhcccc
Q psy2887 85 KDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYR-QYIEKDAAFERRFQK 149 (899)
Q Consensus 85 ~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~-~~~~ld~al~~Rf~~ 149 (899)
.+.+++|||++.+.+ +..+.+....+.+ +.+|.++...+++ +.+...+.|+.+.+.
T Consensus 76 ~~dvviIDE~Q~~~~--------~~~~~l~~l~~~~-~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~ 132 (184)
T 2orw_A 76 DTRGVFIDEVQFFNP--------SLFEVVKDLLDRG-IDVFCAGLDLTHKQNPFETTALLLSLADT 132 (184)
T ss_dssp TEEEEEECCGGGSCT--------THHHHHHHHHHTT-CEEEEEEESBCTTSCBCHHHHHHHHHCSE
T ss_pred CCCEEEEECcccCCH--------HHHHHHHHHHHCC-CCEEEEeeccccccCCccchHHHHHHhhh
Confidence 356999999998743 3555666666654 3344333322211 134556677776653
No 222
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.53 E-value=0.00018 Score=81.42 Aligned_cols=113 Identities=23% Similarity=0.363 Sum_probs=65.1
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCC-ceEEeccccccc----------c
Q psy2887 392 GQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE-SIIRIDMSEFIE----------K 460 (899)
Q Consensus 392 gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~-~~~~~~~~~~~~----------~ 460 (899)
+|..++..+...+.... +++++.|+||||||+++.+++..+...+. .++.+..+.-.. .
T Consensus 29 ~Q~~av~~~~~~i~~~~----------~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~~ 98 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK----------HHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEA 98 (459)
T ss_dssp HHHHHHHHHHHHHHSSS----------CEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSCE
T ss_pred HHHHHHHHHHHHHhcCC----------CEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccch
Confidence 57777777776665311 26999999999999999999999866554 343332211100 0
Q ss_pred cchhhccCCCCCcccccccchh--hHHHHhCCCEEEEEccccccCHHHHHHHHHhhcC
Q psy2887 461 HSISRLIGAPPGYIGYEEGGYL--TEIVRRKPYSLILLDEIEKANSDVFNILLQILDD 516 (899)
Q Consensus 461 ~~~~~l~g~~~~~~g~~~~~~l--~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~ 516 (899)
.....+++..+...+ ....+ ..........+|++||+..+++..+..|+..+..
T Consensus 99 ~T~h~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~~ 154 (459)
T 3upu_A 99 STIHSILKINPVTYE--ENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIPP 154 (459)
T ss_dssp EEHHHHHTEEEEECS--SCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSCT
T ss_pred hhHHHHhccCccccc--ccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhccC
Confidence 001111111000000 00000 0000112357999999999999999999998863
No 223
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.40 E-value=0.00044 Score=89.04 Aligned_cols=80 Identities=14% Similarity=0.095 Sum_probs=51.6
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcC--cc------------cCchHHHHHHHHH
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG--TK------------YRGEFEDRLKKIL 77 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~--~~------------~~g~~~~~l~~~~ 77 (899)
+..+++|+||||||||+||.+++.+.... +..+..++....... .. .....++.++.+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~-------G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT-------TCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-------CCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHH
Confidence 56689999999999999999999877543 445555554422100 01 1123343344333
Q ss_pred HHHHhcCCCEEEEEcccccccc
Q psy2887 78 KEISNNQKDIIIFIDELHTMIG 99 (899)
Q Consensus 78 ~~~~~~~~~~iL~iDEi~~l~~ 99 (899)
..+. ...|.+||||+++.+.+
T Consensus 1499 ~lvr-~~~~~lVVIDsi~al~p 1519 (2050)
T 3cmu_A 1499 ALAR-SGAVDVIVVDSVAALTP 1519 (2050)
T ss_dssp HHHH-HTCCSEEEESCGGGCCC
T ss_pred HHHh-cCCCCEEEEcChhHhcc
Confidence 3333 45689999999998886
No 224
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.37 E-value=0.00038 Score=67.60 Aligned_cols=115 Identities=11% Similarity=0.141 Sum_probs=69.4
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccc----ccccchhhc------cCCCCCccccccc----------
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF----IEKHSISRL------IGAPPGYIGYEEG---------- 479 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~----~~~~~~~~l------~g~~~~~~g~~~~---------- 479 (899)
.+++++++|.||||+|-.+|-...+.+.++..+....- .....+..+ .|. ++.-....
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~--gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMAT--GFTWETQNREADTAACMA 107 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCT--TCCCCGGGHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEccc--ccccCCCCcHHHHHHHHH
Confidence 59999999999999999999999898988887744321 011111122 121 22211111
Q ss_pred --chhhHHHHhCCCEEEEEcccccc---CHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhh
Q psy2887 480 --GYLTEIVRRKPYSLILLDEIEKA---NSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKE 547 (899)
Q Consensus 480 --~~l~~~~~~~~~~vl~lDEid~~---~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~ 547 (899)
....+.+....+.+|+|||+.-+ .---.+.+++++.. .+.+.-+|+|+|..++.+.+
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~-----------Rp~~~~vIlTGr~ap~~l~e 169 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-----------RPGHQTVIITGRGCHRDILD 169 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-----------SCTTCEEEEECSSCCHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh-----------CcCCCEEEEECCCCcHHHHH
Confidence 01122223355789999999432 21223346666765 24677899999987765544
No 225
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.34 E-value=0.00035 Score=75.55 Aligned_cols=92 Identities=21% Similarity=0.356 Sum_probs=53.2
Q ss_pred eEEEEecCCCChHHHHHHHHHHHhccC-CCceEEec-ccccccccchhhccCCCCCccccc---ccchhhHHHHhCCCEE
Q psy2887 419 GSFMFLGPTGVGKTELCKTLSACIFNN-EESIIRID-MSEFIEKHSISRLIGAPPGYIGYE---EGGYLTEIVRRKPYSL 493 (899)
Q Consensus 419 ~~ill~GppGtGKT~lA~~la~~l~~~-~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~g~~---~~~~l~~~~~~~~~~v 493 (899)
+.+++.||+|+||||+.++++..+... +..++.+. ..++....... ++... .++.. -...+..+++ ..+.+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~-~v~q~--~~~~~~~~~~~~La~aL~-~~Pdv 199 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKC-LVNQR--EVHRDTLGFSEALRSALR-EDPDI 199 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSS-EEEEE--EBTTTBSCHHHHHHHHTT-SCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcccc-ceeee--eeccccCCHHHHHHHHhh-hCcCE
Confidence 469999999999999999999988543 44554442 22222111000 00000 01111 1112333344 45689
Q ss_pred EEEccccccCHHHHHHHHHhhcC
Q psy2887 494 ILLDEIEKANSDVFNILLQILDD 516 (899)
Q Consensus 494 l~lDEid~~~~~~~~~Ll~~le~ 516 (899)
|++||+- ++.....+++..+.
T Consensus 200 illDEp~--d~e~~~~~~~~~~~ 220 (356)
T 3jvv_A 200 ILVGEMR--DLETIRLALTAAET 220 (356)
T ss_dssp EEESCCC--SHHHHHHHHHHHHT
T ss_pred EecCCCC--CHHHHHHHHHHHhc
Confidence 9999997 57777777777664
No 226
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.29 E-value=0.0063 Score=67.11 Aligned_cols=140 Identities=14% Similarity=0.152 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHhhcC---CCCCCCCceEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccccccc-----chhh
Q psy2887 394 DEAISAVSNAIRRSRSG---LSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKH-----SISR 465 (899)
Q Consensus 394 ~~~~~~l~~~i~~~~~~---~~~~~~~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~-----~~~~ 465 (899)
+.+++.+...+...... ......+...++++|++|+||||++..||..+...+.++..+++..+.... ....
T Consensus 73 ~~v~~~l~~eL~~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~ 152 (443)
T 3dm5_A 73 EHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLD 152 (443)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhcCcccccccCCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHH
Confidence 44555565555443211 111112234799999999999999999999997777788777776553311 0011
Q ss_pred ccCCCC--CcccccccchhhH---HHHhCCCEEEEEccccccCH--HHHHHHHHhhcCCceecCCCceEecCCeEEEEec
Q psy2887 466 LIGAPP--GYIGYEEGGYLTE---IVRRKPYSLILLDEIEKANS--DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTS 538 (899)
Q Consensus 466 l~g~~~--~~~g~~~~~~l~~---~~~~~~~~vl~lDEid~~~~--~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ts 538 (899)
..|-+. ...+.+....+.. .++...+.++++|.+...+. .....|..+..- +....+++|+-+
T Consensus 153 ~~gvpv~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~----------~~pd~vlLVvDA 222 (443)
T 3dm5_A 153 RYHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNV----------IHPHEVILVIDG 222 (443)
T ss_dssp GGTCEEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHH----------HCCSEEEEEEEG
T ss_pred hcCCcEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHh----------hcCceEEEEEeC
Confidence 111110 0111111112222 33344578999999987663 334444333221 012345667666
Q ss_pred CCChh
Q psy2887 539 NLGSD 543 (899)
Q Consensus 539 n~~~~ 543 (899)
..+.+
T Consensus 223 ~~gq~ 227 (443)
T 3dm5_A 223 TIGQQ 227 (443)
T ss_dssp GGGGG
T ss_pred CCchh
Confidence 65443
No 227
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.26 E-value=0.00044 Score=69.56 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=20.6
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQ 35 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~ 35 (899)
..-++|+||||+||||++..+|.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 44578999999999999999998
No 228
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.23 E-value=0.00021 Score=72.58 Aligned_cols=27 Identities=30% Similarity=0.310 Sum_probs=22.7
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHH
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRII 38 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~ 38 (899)
....++|+||||+|||||++.++..+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 345678999999999999999997654
No 229
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.23 E-value=0.00045 Score=67.48 Aligned_cols=94 Identities=14% Similarity=0.198 Sum_probs=54.8
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccc---cccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE---FIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILL 496 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~---~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~l 496 (899)
..+++||.|+||||.+-.++..+...+.++..+...- +......+++ |......+......+...+. .+..+|+|
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~-g~~~~a~~~~~~~~i~~~~~-~~~dvViI 87 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHM-GEKEQAVAIKNSREILKYFE-EDTEVIAI 87 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTT-SCEEECEEESSSTHHHHHCC-TTCSEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhc-CCceeeEeeCCHHHHHHHHh-ccCCEEEE
Confidence 5789999999999999888888766677777664221 1111111111 21110111111123333332 23579999
Q ss_pred ccccccCHHHHHHHHHhhc
Q psy2887 497 DEIEKANSDVFNILLQILD 515 (899)
Q Consensus 497 DEid~~~~~~~~~Ll~~le 515 (899)
||++.++++....|..+.+
T Consensus 88 DEaqfl~~~~v~~l~~l~~ 106 (191)
T 1xx6_A 88 DEVQFFDDEIVEIVNKIAE 106 (191)
T ss_dssp CSGGGSCTHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 9999998887776655554
No 230
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.22 E-value=0.00027 Score=69.15 Aligned_cols=24 Identities=38% Similarity=0.595 Sum_probs=22.0
Q ss_pred EEEEecCCCChHHHHHHHHHHHhc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIF 443 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~ 443 (899)
.+.|.||+|+||||+++.|+..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 388999999999999999999875
No 231
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.20 E-value=0.0025 Score=70.35 Aligned_cols=115 Identities=15% Similarity=0.206 Sum_probs=64.8
Q ss_pred ceEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccccccc-----chhhccCCCCCccc---ccccchhhHHHHh-
Q psy2887 418 YGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKH-----SISRLIGAPPGYIG---YEEGGYLTEIVRR- 488 (899)
Q Consensus 418 ~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~-----~~~~l~g~~~~~~g---~~~~~~l~~~~~~- 488 (899)
...++|+||+|+||||++..||..+...+.++..+++..+.... ......|-+. +.. .+........+..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~-~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQV-YGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCE-ECCTTCSCHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCce-eeccccCCHHHHHHHHHHHH
Confidence 34789999999999999999999997777777777665443211 0111112111 111 1111112233333
Q ss_pred --CCCEEEEEccccccC----HHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChh
Q psy2887 489 --KPYSLILLDEIEKAN----SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSD 543 (899)
Q Consensus 489 --~~~~vl~lDEid~~~----~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~ 543 (899)
..+.++++|.....+ +.....+..+... +....+++|+.+..+.+
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~----------~~pd~vlLVlDa~~gq~ 226 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDV----------LKPDDVILVIDASIGQK 226 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHH----------HCCSEEEEEEEGGGGGG
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHh----------hCCcceEEEEeCccchH
Confidence 356899999998755 3444444443321 01245567776665543
No 232
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.17 E-value=0.00058 Score=69.29 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=28.8
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEeccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMS 455 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~ 455 (899)
.++++||||+|||++++.++..+...+.+++.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 588999999999999999997775555666666543
No 233
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.17 E-value=0.00071 Score=66.66 Aligned_cols=94 Identities=13% Similarity=0.086 Sum_probs=53.8
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccc---cccchhhccCCCCCcccccccchhhHHHHhCCCEEEEE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI---EKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILL 496 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~---~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~l 496 (899)
-.+++||.|+||||.+-.++..+...+.+++.+...--. .....+++ |......+......+...+. .+..+|+|
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~-g~~~~a~~~~~~~~~~~~~~-~~~dvViI 107 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHN-GLKVKAVPVSASKDIFKHIT-EEMDVIAI 107 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------CCEEECSSGGGGGGGCC-SSCCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhc-CCeeEEeecCCHHHHHHHHh-cCCCEEEE
Confidence 467899999999999988888887777777777533211 11111222 32221112222223333222 24679999
Q ss_pred ccccccCHHHHHHHHHhhc
Q psy2887 497 DEIEKANSDVFNILLQILD 515 (899)
Q Consensus 497 DEid~~~~~~~~~Ll~~le 515 (899)
||+.-++++..+.|..+.+
T Consensus 108 DEaQF~~~~~V~~l~~l~~ 126 (214)
T 2j9r_A 108 DEVQFFDGDIVEVVQVLAN 126 (214)
T ss_dssp CCGGGSCTTHHHHHHHHHH
T ss_pred ECcccCCHHHHHHHHHHhh
Confidence 9999998887766555444
No 234
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.15 E-value=0.0013 Score=70.77 Aligned_cols=84 Identities=20% Similarity=0.222 Sum_probs=51.8
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCC--ccc-ccccch----hhHHHHhCCCE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPG--YIG-YEEGGY----LTEIVRRKPYS 492 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~--~~g-~~~~~~----l~~~~~~~~~~ 492 (899)
.++++||||+|||+|+..++..+...+.+++.++..+..... ...-+|..+. ++. ...... +...++...+.
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~-ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~d 141 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV-YAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVD 141 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-HHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH-HHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCC
Confidence 588999999999999999999886667788888876543322 1111222111 000 011112 22233345678
Q ss_pred EEEEccccccCH
Q psy2887 493 LILLDEIEKANS 504 (899)
Q Consensus 493 vl~lDEid~~~~ 504 (899)
+++||.+..+.+
T Consensus 142 lvVIDSi~~l~~ 153 (356)
T 3hr8_A 142 LIVVDSVAALVP 153 (356)
T ss_dssp EEEEECTTTCCC
T ss_pred eEEehHhhhhcC
Confidence 999999987654
No 235
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.13 E-value=0.00065 Score=68.01 Aligned_cols=103 Identities=17% Similarity=0.075 Sum_probs=54.8
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhh--hh--cCcccCchH-----HHHHHHHHHHHHh--
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIAL--LL--AGTKYRGEF-----EDRLKKILKEISN-- 82 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~--l~--~~~~~~g~~-----~~~l~~~~~~~~~-- 82 (899)
.-++++||+|+||||++..++.++... +..++.+.... -. .-.+..|-. .....++++.+..
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~-------g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYA-------DVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHT-------TCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhc-------CCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 346778999999999999988887543 23333332110 00 000001100 0012234444432
Q ss_pred -cCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhH
Q psy2887 83 -NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNE 132 (899)
Q Consensus 83 -~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~ 132 (899)
...+.+++|||++.+.. +..+.+..+... .+.+|.++...+
T Consensus 86 ~~~~~dvViIDEaQ~l~~--------~~ve~l~~L~~~-gi~Vil~Gl~~d 127 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDD--------RICEVANILAEN-GFVVIISGLDKN 127 (223)
T ss_dssp SCTTCCEEEECSGGGSCT--------HHHHHHHHHHHT-TCEEEEECCSBC
T ss_pred hCCCCCEEEEecCccCcH--------HHHHHHHHHHhC-CCeEEEEecccc
Confidence 23467999999998643 333444333333 577777776544
No 236
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.11 E-value=0.0051 Score=61.05 Aligned_cols=39 Identities=21% Similarity=0.159 Sum_probs=30.5
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEeh
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 56 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~ 56 (899)
+.+-+|++.|+|||||||++-.+|..+... +..+..++.
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~-------G~~V~v~d~ 42 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQ-------GVRVMAGVV 42 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHT-------TCCEEEEEC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHC-------CCCEEEEEe
Confidence 456689999999999999999999988654 445554444
No 237
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.10 E-value=0.0059 Score=70.59 Aligned_cols=44 Identities=11% Similarity=0.103 Sum_probs=35.2
Q ss_pred CChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHH
Q psy2887 391 VGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSA 440 (899)
Q Consensus 391 ~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~ 440 (899)
+|.+..++.|...+.... ......+.++|++|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~------~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC------DLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT------TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc------CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 599999999988886431 11224688999999999999999996
No 238
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.09 E-value=0.00025 Score=70.24 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=23.2
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l 37 (899)
...|+|+|+||+||||+++.||+.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999999998
No 239
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.06 E-value=0.0012 Score=71.17 Aligned_cols=83 Identities=17% Similarity=0.219 Sum_probs=50.7
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCc---ccccccchh----hHHHHhCCCE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGY---IGYEEGGYL----TEIVRRKPYS 492 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~---~g~~~~~~l----~~~~~~~~~~ 492 (899)
.++++||||+|||++|..++..+...+.+++.++...-.+.. ....+|-.... ........+ ...++...++
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~-~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~ 141 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPE-YAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALD 141 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHH-HHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCC
Confidence 589999999999999999998776667788888776533221 11122211100 000011122 2233345678
Q ss_pred EEEEccccccC
Q psy2887 493 LILLDEIEKAN 503 (899)
Q Consensus 493 vl~lDEid~~~ 503 (899)
+||||++..+.
T Consensus 142 lIVIDsl~~l~ 152 (349)
T 2zr9_A 142 IIVIDSVAALV 152 (349)
T ss_dssp EEEEECGGGCC
T ss_pred EEEEcChHhhc
Confidence 99999998776
No 240
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.04 E-value=0.00078 Score=77.89 Aligned_cols=90 Identities=19% Similarity=0.316 Sum_probs=54.9
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccccc----------ccchhhccCCCCCcccccccchhhHHHHhC
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE----------KHSISRLIGAPPGYIGYEEGGYLTEIVRRK 489 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~----------~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~ 489 (899)
.+++.||||||||+++.+++..+...+.++..+-.+.-.. ...+..+++..+. +.... .-...
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~--~~~~~-----~~~~~ 278 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQ--GFRHN-----HLEPA 278 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETT--EESCS-----SSSCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcc--hhhhh-----hcccc
Confidence 5899999999999999999998866666655442211100 0111122221110 00000 00112
Q ss_pred CCEEEEEccccccCHHHHHHHHHhhcC
Q psy2887 490 PYSLILLDEIEKANSDVFNILLQILDD 516 (899)
Q Consensus 490 ~~~vl~lDEid~~~~~~~~~Ll~~le~ 516 (899)
+..+|++||+..++...+..|+..+..
T Consensus 279 ~~dvlIIDEasml~~~~~~~Ll~~~~~ 305 (574)
T 3e1s_A 279 PYDLLIVDEVSMMGDALMLSLLAAVPP 305 (574)
T ss_dssp SCSEEEECCGGGCCHHHHHHHHTTSCT
T ss_pred cCCEEEEcCccCCCHHHHHHHHHhCcC
Confidence 457999999999999998888887753
No 241
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.04 E-value=0.00029 Score=68.83 Aligned_cols=32 Identities=31% Similarity=0.327 Sum_probs=27.8
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEE
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 54 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~ 54 (899)
+.+|+|+|+|||||||+++.||+.+ +.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l----------~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT----------KRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH----------CCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh----------CCCEEEC
Confidence 4579999999999999999999998 7777643
No 242
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.03 E-value=0.0018 Score=70.19 Aligned_cols=79 Identities=11% Similarity=0.167 Sum_probs=49.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhh-------cCcc-------cCchHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLL-------AGTK-------YRGEFEDRLKKILK 78 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~-------~~~~-------~~g~~~~~l~~~~~ 78 (899)
..-++|+||||+|||+||..+|..+... +..++.++..... .|-. ..... ..+...+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~-------g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~-e~~l~~l~ 145 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA-------GGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNG-EQALEIME 145 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSH-HHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC-------CCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcH-HHHHHHHH
Confidence 4467889999999999999998876543 3445555543211 0000 01112 23444455
Q ss_pred HHHhcCCCEEEEEcccccccc
Q psy2887 79 EISNNQKDIIIFIDELHTMIG 99 (899)
Q Consensus 79 ~~~~~~~~~iL~iDEi~~l~~ 99 (899)
.+.+...+.+++||.+..+.+
T Consensus 146 ~l~~~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVAALTP 166 (366)
T ss_dssp HHHTTTCCSEEEEECTTTCCC
T ss_pred HHHhcCCCCEEEEeChHHhcc
Confidence 554445678999999999985
No 243
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.00 E-value=0.00053 Score=66.41 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=28.0
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehh
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA 57 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~ 57 (899)
..|+|+|+||+||||+++.|++.+ +.+++.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l----------~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL----------PEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS----------SSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc----------CCCeEEeccc
Confidence 468999999999999999999988 5566655543
No 244
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.99 E-value=0.0017 Score=67.07 Aligned_cols=91 Identities=23% Similarity=0.394 Sum_probs=48.3
Q ss_pred eEEEEecCCCChHHHHHHHHHHHhccC-CCceEEecc-cccccccchhhccCCCCCcccccc---cchhhHHHHhCCCEE
Q psy2887 419 GSFMFLGPTGVGKTELCKTLSACIFNN-EESIIRIDM-SEFIEKHSISRLIGAPPGYIGYEE---GGYLTEIVRRKPYSL 493 (899)
Q Consensus 419 ~~ill~GppGtGKT~lA~~la~~l~~~-~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~g~~~---~~~l~~~~~~~~~~v 493 (899)
..+++.||+|+||||+.++++..+... .+.+....- -++....... ++.. ..+|... ...+...+.. .+.+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~-~v~q--~~~gl~~~~l~~~la~aL~~-~p~i 101 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKS-IVNQ--REVGEDTKSFADALRAALRE-DPDV 101 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSS-EEEE--EEBTTTBSCHHHHHHHHHHH-CCSE
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcce-eeeH--HHhCCCHHHHHHHHHHHHhh-CCCE
Confidence 369999999999999999999987443 344433221 1111110000 0000 0011111 1223344444 5689
Q ss_pred EEEccccccCHHHHHHHHHhhc
Q psy2887 494 ILLDEIEKANSDVFNILLQILD 515 (899)
Q Consensus 494 l~lDEid~~~~~~~~~Ll~~le 515 (899)
|++||+- ++.....+++..+
T Consensus 102 lllDEp~--D~~~~~~~l~~~~ 121 (261)
T 2eyu_A 102 IFVGEMR--DLETVETALRAAE 121 (261)
T ss_dssp EEESCCC--SHHHHHHHHHHHH
T ss_pred EEeCCCC--CHHHHHHHHHHHc
Confidence 9999997 5555544555443
No 245
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.96 E-value=0.0047 Score=72.28 Aligned_cols=46 Identities=17% Similarity=0.262 Sum_probs=36.3
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHH
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSA 440 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~ 440 (899)
..++|.+..+..|...+.... .....++++||+|+|||+||+.+++
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~-------~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLK-------GEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTST-------TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CeecccHHHHHHHHHHHhccc-------CCCceEEEEcCCCCCHHHHHHHHHh
Confidence 468899999999988876421 1123689999999999999999864
No 246
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.93 E-value=0.002 Score=65.70 Aligned_cols=25 Identities=36% Similarity=0.331 Sum_probs=21.7
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l 37 (899)
..-++|+||||+||||+++.++...
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4457899999999999999999864
No 247
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.93 E-value=0.001 Score=66.75 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=28.1
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE 456 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~ 456 (899)
.++++||||+|||++++.++. ..+.+++.++..+
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEG 55 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCC
Confidence 589999999999999999998 2366777777654
No 248
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.92 E-value=0.0012 Score=66.76 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.3
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l 37 (899)
.-+.|+||||+|||||++.++..+
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999865
No 249
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.91 E-value=0.00061 Score=66.18 Aligned_cols=27 Identities=41% Similarity=0.639 Sum_probs=24.4
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l 37 (899)
....+|+|+|+||+||||+++.|++.+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999999988
No 250
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.90 E-value=0.00098 Score=65.12 Aligned_cols=24 Identities=33% Similarity=0.625 Sum_probs=22.1
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHH
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRII 38 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l~ 38 (899)
.+.|+||+|+||||+++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 588999999999999999999875
No 251
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.89 E-value=0.0015 Score=70.44 Aligned_cols=79 Identities=16% Similarity=0.135 Sum_probs=47.6
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhh-------cCcc-------cCchHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLL-------AGTK-------YRGEFEDRLKKILK 78 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~-------~~~~-------~~g~~~~~l~~~~~ 78 (899)
..-++|+||||+|||||+..++..+... +..+..++..... .|-. .....+ .+..++.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~-------g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e-~~l~~~~ 132 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAA-------GGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGE-QALEIAD 132 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHH-HHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHH-HHHHHHH
Confidence 4458899999999999999998776543 3344445433211 0000 001122 2333444
Q ss_pred HHHhcCCCEEEEEcccccccc
Q psy2887 79 EISNNQKDIIIFIDELHTMIG 99 (899)
Q Consensus 79 ~~~~~~~~~iL~iDEi~~l~~ 99 (899)
.+.....+.+++||++..+..
T Consensus 133 ~l~~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAALVP 153 (349)
T ss_dssp HHHTTTCCSEEEEECGGGCCC
T ss_pred HHHhcCCCCEEEEcChHhhcc
Confidence 444345588999999999974
No 252
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.84 E-value=0.0016 Score=68.34 Aligned_cols=34 Identities=29% Similarity=0.450 Sum_probs=27.4
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE 456 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~ 456 (899)
.++|.||||+||||+|+.|++.+ ...++.+++..
T Consensus 35 livl~G~sGsGKSTla~~L~~~~---~~~~~~Is~D~ 68 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDNDT 68 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHT---TTCCEEECTHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechH
Confidence 68899999999999999999987 34456666533
No 253
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.84 E-value=0.0012 Score=71.32 Aligned_cols=81 Identities=14% Similarity=0.183 Sum_probs=49.4
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhh-------cCcc------cCchHHHHHHHHHH
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLL-------AGTK------YRGEFEDRLKKILK 78 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~-------~~~~------~~g~~~~~l~~~~~ 78 (899)
....++|+|+||+|||+||..+|..+... +..++.++..... .|-. ........+..++.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~-------g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 34468999999999999999999877543 3455555542110 0000 00011223444555
Q ss_pred HHHhcCCCEEEEEcccccccc
Q psy2887 79 EISNNQKDIIIFIDELHTMIG 99 (899)
Q Consensus 79 ~~~~~~~~~iL~iDEi~~l~~ 99 (899)
.+.+...+.+++||.+..+..
T Consensus 135 ~l~~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHHHHTCCSEEEEECGGGCCC
T ss_pred HHHhccCCCEEEEcCHHHhcc
Confidence 444345577999999999975
No 254
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=96.84 E-value=0.0043 Score=66.58 Aligned_cols=66 Identities=24% Similarity=0.352 Sum_probs=44.3
Q ss_pred cccccccc------------cHHHHHHHHHHhhc-cCCccceeeccccCCCCceE-e-hhHHHHHhc----CCccEEEcc
Q psy2887 631 YGARDVHG------------CKKSLSILLKKIHK-KSPEANFIFLGDLINKGPQS-L-DTLRMVYSM----RNYAKIVLG 691 (899)
Q Consensus 631 ~~~~di~~------------~~~~l~~~l~~~~~-~~~~~~li~~GD~~d~g~~~-~-~~~~~l~~~----~~~~~~v~G 691 (899)
..++|+|. ....++++++.+.- ....|.++++||+++.|... . .+.+++..+ .-.+.+|+|
T Consensus 29 ~~iSD~H~~~~~~~~~~~~~~~~~l~~~l~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~~~~~pv~~v~G 108 (330)
T 3ib7_A 29 LHISDTHLIGGDRRLYGAVDADDRLGELLEQLNQSGLRPDAIVFTGDLADKGEPAAYRKLRGLVEPFAAQLGAELVWVMG 108 (330)
T ss_dssp EEECCCCBCSSSCCBTTTBCHHHHHHHHHHHHHHHTCCCSEEEECSCCBTTCCHHHHHHHHHHHHHHHHHHTCEEEECCC
T ss_pred EEEeCCccCCCCcccccccCHHHHHHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHhhcCCCEEEeCC
Confidence 44688885 36678888877764 13568899999999998632 1 222333322 334789999
Q ss_pred CChHh
Q psy2887 692 NHEIH 696 (899)
Q Consensus 692 NHe~~ 696 (899)
|||..
T Consensus 109 NHD~~ 113 (330)
T 3ib7_A 109 NHDDR 113 (330)
T ss_dssp TTSCH
T ss_pred CCCCH
Confidence 99963
No 255
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.81 E-value=0.0019 Score=65.91 Aligned_cols=37 Identities=27% Similarity=0.427 Sum_probs=28.9
Q ss_pred EEEEecCCCChHHHHHHHHHHHh-cc-----CCCceEEecccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACI-FN-----NEESIIRIDMSE 456 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l-~~-----~~~~~~~~~~~~ 456 (899)
.++|+||||+|||++++.++... .. .+...+.++...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 58999999999999999999863 21 245677777655
No 256
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.81 E-value=0.0025 Score=65.22 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=30.0
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE 456 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~ 456 (899)
.++++||||+|||++|..++..+...+.+++.++..+
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 5899999999999999988877756667777776543
No 257
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.79 E-value=0.00066 Score=65.71 Aligned_cols=34 Identities=15% Similarity=0.384 Sum_probs=28.6
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE 456 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~ 456 (899)
.++|.|+||+||||+|+.|++.+ +.+++.++...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D~ 38 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVDS 38 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCCeEEeccch
Confidence 58999999999999999999998 66777655443
No 258
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.79 E-value=0.0077 Score=68.28 Aligned_cols=143 Identities=16% Similarity=0.243 Sum_probs=87.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhh--h--cC-----cccCchH---HHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALL--L--AG-----TKYRGEF---EDRLKKILKEI 80 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l--~--~~-----~~~~g~~---~~~l~~~~~~~ 80 (899)
.+|+|+.|.+|+|||++++.+...+.....|. ...++.+|.... . .+ .....+. ...++.+..++
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~---ev~lilIDpKg~eLs~~~~lPHl~~~Vvtd~~~a~~~L~~lv~EM 290 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPS---EARLIMIDPKMLELSIYEGIPHLLCPVVTDMKEAANALRWSVAEM 290 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTT---TEEEEEECSSSHHHHTTTTCTTBSSSCBCCHHHHHHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCc---ceEEEEeCCChhhhHhhcCCCcccceeeCCHHHHHHHHHHHHHHH
Confidence 47999999999999999999888776554443 456777776532 1 01 0011111 11111111111
Q ss_pred H-------------------------h-----------------------cCCCEEEEEccccccccCCCCCchhhHHHh
Q psy2887 81 S-------------------------N-----------------------NQKDIIIFIDELHTMIGTGKVEGSIDAGNM 112 (899)
Q Consensus 81 ~-------------------------~-----------------------~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~ 112 (899)
. . .-.+.+++|||++.++.... .+....
T Consensus 291 erR~~ll~~~gvrni~~Yn~~~~~~~~~G~~~~dp~~~~~~~~~~~~~~~~lP~ivvVIDE~~~L~~~~~----~~~~~~ 366 (574)
T 2iut_A 291 ERRYRLMAAMGVRNLAGFNRKVKDAEEAGTPLTDPLFRRESPDDEPPQLSTLPTIVVVVDEFADMMMIVG----KKVEEL 366 (574)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHTTCCCBCTTCCCCSTTCCCCBCCCCCEEEEEESCCTTHHHHTC----HHHHHH
T ss_pred HHHHHHHHHcCCccHHHHHHHHHHHhhcccccccccccccccccccccccCCCcEEEEEeCHHHHhhhhh----HHHHHH
Confidence 1 0 01136999999999875321 233344
Q ss_pred hhhhhc---CCceEEEEecChhHHHHhhhcCHHHHhcccc-ccccCCCHHHHHHHHH
Q psy2887 113 LKPELS---RGELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILR 165 (899)
Q Consensus 113 l~~~l~---~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~-i~l~~p~~~e~~~il~ 165 (899)
+..+.. .-.+.+|.+|..+. .-.++..++..|.. |.|...+..+...||.
T Consensus 367 L~~Iar~GRa~GIhLIlaTQRPs---~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 367 IARIAQKARAAGIHLILATQRPS---VDVITGLIKANIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp HHHHHHHCTTTTEEEEEEESCCC---TTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred HHHHHHHHhhCCeEEEEEecCcc---cccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence 444443 34688888887764 11577888888874 8888888888877774
No 259
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.79 E-value=0.0053 Score=65.73 Aligned_cols=91 Identities=25% Similarity=0.299 Sum_probs=49.1
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 499 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 499 (899)
.+++.||+|+||||+.++|+..+.. ....+.++.............++--.+ -|......+..++ ...+.+|++||+
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~~~~~~i~~~~g-gg~~~r~~la~aL-~~~p~ilildE~ 249 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFKHHKNYTQLFFG-GNITSADCLKSCL-RMRPDRIILGEL 249 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCSSCSSEEEEECB-TTBCHHHHHHHHT-TSCCSEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccccccchhEEEEEeC-CChhHHHHHHHHh-hhCCCEEEEcCC
Confidence 5999999999999999999998744 344555554321111000000000000 0111112233333 345689999999
Q ss_pred cccCHHHHHHHHHhhcC
Q psy2887 500 EKANSDVFNILLQILDD 516 (899)
Q Consensus 500 d~~~~~~~~~Ll~~le~ 516 (899)
-. ..+.+ +++.+..
T Consensus 250 ~~--~e~~~-~l~~~~~ 263 (330)
T 2pt7_A 250 RS--SEAYD-FYNVLCS 263 (330)
T ss_dssp CS--THHHH-HHHHHHT
T ss_pred Ch--HHHHH-HHHHHhc
Confidence 86 34554 3444443
No 260
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.79 E-value=0.00071 Score=65.35 Aligned_cols=23 Identities=39% Similarity=0.618 Sum_probs=22.2
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l 37 (899)
+|+|.|+||+||||+++.||+.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 69999999999999999999998
No 261
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.78 E-value=0.00062 Score=65.26 Aligned_cols=31 Identities=29% Similarity=0.417 Sum_probs=27.4
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEE
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 54 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~ 54 (899)
.+|+|+|+|||||||+++.||+.+ +.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l----------g~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL----------KLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH----------TCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEC
Confidence 489999999999999999999999 7777643
No 262
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.78 E-value=0.0018 Score=65.50 Aligned_cols=37 Identities=32% Similarity=0.389 Sum_probs=27.9
Q ss_pred EEEEecCCCChHHHHHHHHHHHhcc------CCCceEEecccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFN------NEESIIRIDMSE 456 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~------~~~~~~~~~~~~ 456 (899)
.+.|.||+|+||||+++.|+..+.. .+...+.++...
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 5889999999999999999986532 133466666544
No 263
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.78 E-value=0.0028 Score=68.69 Aligned_cols=83 Identities=18% Similarity=0.257 Sum_probs=49.8
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCC--cc-cccccchh----hHHHHhCCCE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPG--YI-GYEEGGYL----TEIVRRKPYS 492 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~--~~-g~~~~~~l----~~~~~~~~~~ 492 (899)
.++++||||+|||++|..++..+...+.+++.++...-.+... ..-+|.... ++ .......+ ...++....+
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~-a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~ 154 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVY-ARALGVNTDELLVSQPDNGEQALEIMELLVRSGAID 154 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH-HHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCS
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHH-HHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCC
Confidence 5889999999999999999888765677888887765332211 111121110 00 00111122 2233345678
Q ss_pred EEEEccccccC
Q psy2887 493 LILLDEIEKAN 503 (899)
Q Consensus 493 vl~lDEid~~~ 503 (899)
+||||.+..+.
T Consensus 155 lVVIDsl~~l~ 165 (366)
T 1xp8_A 155 VVVVDSVAALT 165 (366)
T ss_dssp EEEEECTTTCC
T ss_pred EEEEeChHHhc
Confidence 99999998765
No 264
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.77 E-value=0.0008 Score=65.61 Aligned_cols=30 Identities=20% Similarity=0.354 Sum_probs=26.3
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEe
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRI 452 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~ 452 (899)
.++|.||||+||||+|+.||+.+ +.+++..
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l---~~~~i~~ 36 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLT---KRILYDS 36 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---CCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCCEEEC
Confidence 68999999999999999999999 7666543
No 265
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.77 E-value=0.0042 Score=63.43 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=22.0
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHH
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRII 38 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~ 38 (899)
...-++|+||||+||||++..++..+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344678999999999999988876654
No 266
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.76 E-value=0.0023 Score=69.10 Aligned_cols=83 Identities=18% Similarity=0.255 Sum_probs=50.8
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCCC--ccc-ccccchh----hHHHHhCCCE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPG--YIG-YEEGGYL----TEIVRRKPYS 492 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~--~~g-~~~~~~l----~~~~~~~~~~ 492 (899)
.++++||||+|||++|..++..+...+.+++.++...-.+... ..-+|.... ++. ......+ ...++.....
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~-a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~ 143 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 143 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH-HHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHH-HHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCC
Confidence 5899999999999999999988766677888888754332211 111121110 000 0011122 2233456678
Q ss_pred EEEEccccccC
Q psy2887 493 LILLDEIEKAN 503 (899)
Q Consensus 493 vl~lDEid~~~ 503 (899)
+|+||.+..+.
T Consensus 144 lVVIDsl~~l~ 154 (356)
T 1u94_A 144 VIVVDSVAALT 154 (356)
T ss_dssp EEEEECGGGCC
T ss_pred EEEEcCHHHhc
Confidence 99999998776
No 267
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.76 E-value=0.00082 Score=64.56 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=26.5
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEe
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLD 55 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~ 55 (899)
.|+|.|+||+||||+++.|++.+ +..++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l----------~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL----------KYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH----------CCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----------CCeeecCc
Confidence 58899999999999999999998 66666444
No 268
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.75 E-value=0.0032 Score=67.66 Aligned_cols=78 Identities=15% Similarity=0.172 Sum_probs=47.0
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhc-------Cc-------ccCchHHHHHHHHHHH
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA-------GT-------KYRGEFEDRLKKILKE 79 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~-------~~-------~~~g~~~~~l~~~~~~ 79 (899)
.-++|+||||+|||||+..++..+... +..++.++...... |- ......+. +-.++..
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~-------gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~-~l~~~~~ 133 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKM-------GGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQ-ALEIVDE 133 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHH-HHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHH-HHHHHHH
Confidence 357889999999999999999887542 34455555432110 00 00112222 2233343
Q ss_pred HHhcCCCEEEEEcccccccc
Q psy2887 80 ISNNQKDIIIFIDELHTMIG 99 (899)
Q Consensus 80 ~~~~~~~~iL~iDEi~~l~~ 99 (899)
+.....+.+++||.+..+++
T Consensus 134 l~~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HHHTSCCSEEEEECTTTCCC
T ss_pred HhhhcCCCeEEehHhhhhcC
Confidence 33345577999999998875
No 269
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.74 E-value=0.00074 Score=71.31 Aligned_cols=100 Identities=20% Similarity=0.236 Sum_probs=54.0
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEEcc
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDE 93 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDE 93 (899)
..|+|+||+||||||+++.||+.+ +..++..|.-.+..+.. .|... .... +.. +-| -.|+|.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l----------~~~iis~Ds~qvy~~~~-igTak-p~~~---e~~--gvp-h~lid~ 67 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL----------PCELISVDSALIYRGMD-IGTAK-PSRE---LLA--RYP-HRLIDI 67 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS----------CEEEEEECTTTTBTTCC-TTTTC-CCHH---HHH--HSC-EETSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc----------CCcEEeccchhhhcCCC-cccCC-CCHH---HHc--CCC-EEEeec
Confidence 368999999999999999999998 77787776543332211 11100 0000 111 113 367776
Q ss_pred ccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChh
Q psy2887 94 LHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLN 131 (899)
Q Consensus 94 i~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~ 131 (899)
.+-...-....-...+...+.....++.++|+..++..
T Consensus 68 ~~~~~~~~~~~F~~~a~~~i~~i~~~g~~~IlvGGt~~ 105 (323)
T 3crm_A 68 RDPAESYSAAEFRADALAAMAKATARGRIPLLVGGTML 105 (323)
T ss_dssp BCTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred cCcccccCHHHHHHHHHHHHHHHHHcCCeEEEECCchh
Confidence 65432111011112234455566667776665555543
No 270
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.72 E-value=0.00073 Score=65.90 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=22.8
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHH-H
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQR-I 37 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~-l 37 (899)
+.+|+|+|+|||||||+++.|++. +
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~ 35 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELD 35 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457999999999999999999998 5
No 271
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.72 E-value=0.00084 Score=65.39 Aligned_cols=31 Identities=35% Similarity=0.541 Sum_probs=26.7
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEE
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 54 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~ 54 (899)
..|+|+|+||+||||+++.|++.+ +.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l----------g~~~id~ 33 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL----------GVGLLDT 33 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH----------TCCEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc----------CCCEEeC
Confidence 369999999999999999999998 6676643
No 272
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.72 E-value=0.002 Score=69.52 Aligned_cols=102 Identities=14% Similarity=0.199 Sum_probs=55.1
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehh-hhhcC-------cccCchHHHHHHHHHHHHHhc
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA-LLLAG-------TKYRGEFEDRLKKILKEISNN 83 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~-~l~~~-------~~~~g~~~~~l~~~~~~~~~~ 83 (899)
.+..++++||+|+||||+.+++++.+.... +..++.+.-. .+... ....+.....+...+..+...
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~------~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~ 195 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTK------YHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALRE 195 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHC------CCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCC------CcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhh
Confidence 345789999999999999999998875321 1222221100 00000 000010001234455555543
Q ss_pred CCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChh
Q psy2887 84 QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLN 131 (899)
Q Consensus 84 ~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~ 131 (899)
.|-+|++||+-. .+....+......+.. ++.++-..
T Consensus 196 -~PdvillDEp~d----------~e~~~~~~~~~~~G~~-vl~t~H~~ 231 (356)
T 3jvv_A 196 -DPDIILVGEMRD----------LETIRLALTAAETGHL-VFGTLHTT 231 (356)
T ss_dssp -CCSEEEESCCCS----------HHHHHHHHHHHHTTCE-EEEEESCS
T ss_pred -CcCEEecCCCCC----------HHHHHHHHHHHhcCCE-EEEEEccC
Confidence 488999999952 2444555555566655 55555443
No 273
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.71 E-value=0.003 Score=65.84 Aligned_cols=83 Identities=14% Similarity=0.225 Sum_probs=49.2
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccC--CCceEEecccccccccchhhccCCCCC--ccc-ccccchh-hHH------HH
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNN--EESIIRIDMSEFIEKHSISRLIGAPPG--YIG-YEEGGYL-TEI------VR 487 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~l~g~~~~--~~g-~~~~~~l-~~~------~~ 487 (899)
.++++||||+|||+|+..++...... +..++.++..+-...... .-+|-... ++- .....++ ... ++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra-~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~ 108 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYL-RSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIE 108 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHH-HHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHH-HHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhh
Confidence 58999999999999998877666443 677888887654332211 11222111 000 0111122 222 34
Q ss_pred hCCCEEEEEccccccC
Q psy2887 488 RKPYSLILLDEIEKAN 503 (899)
Q Consensus 488 ~~~~~vl~lDEid~~~ 503 (899)
...+.+|++|-|..+.
T Consensus 109 ~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 109 RGEKVVVFIDSLGNLA 124 (333)
T ss_dssp TTCCEEEEEECSTTCB
T ss_pred ccCceEEEEecccccc
Confidence 5567999999998764
No 274
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.71 E-value=0.0028 Score=71.55 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=24.2
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHcC
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRIING 40 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l~~~ 40 (899)
.+++|.|+||||||+++..++..+...
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 489999999999999999999988654
No 275
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.70 E-value=0.0025 Score=65.64 Aligned_cols=35 Identities=26% Similarity=0.458 Sum_probs=28.7
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF 457 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~ 457 (899)
.++|.||||+||||+|+.|++.+ +...+.++...+
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l---~~~~~~~~~D~~ 68 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEF---QGNIVIIDGDSF 68 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHT---TTCCEEECGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCCcEEEecHHH
Confidence 68999999999999999999988 445566666554
No 276
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.68 E-value=0.0044 Score=65.46 Aligned_cols=28 Identities=18% Similarity=0.130 Sum_probs=23.5
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHc
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIIN 39 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~ 39 (899)
...-++|+||||+|||||++.+|..+..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3445788999999999999999988754
No 277
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.68 E-value=0.0057 Score=71.59 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=19.9
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHH
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQR 36 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~ 36 (899)
+-++++|++|+||||||..++..
T Consensus 148 ~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 148 GWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEcCCCCCHHHHHHHHHhc
Confidence 45789999999999999998753
No 278
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.67 E-value=0.0078 Score=58.23 Aligned_cols=90 Identities=13% Similarity=0.079 Sum_probs=50.6
Q ss_pred EEEEecCCCChHH-HHHHHHHHHhccCCCceEEeccc---ccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEE
Q psy2887 420 SFMFLGPTGVGKT-ELCKTLSACIFNNEESIIRIDMS---EFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLIL 495 (899)
Q Consensus 420 ~ill~GppGtGKT-~lA~~la~~l~~~~~~~~~~~~~---~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~ 495 (899)
-.+++||.|+||| +|.+++.+.... +.+++.+... .+.+ .-.+++ |.....+-......+....+ +..||+
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~-~~kvl~~kp~~D~R~~~-~i~S~~-g~~~~A~~~~~~~d~~~~~~--~~DvIl 96 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIA-QYKCLVIKYAKDTRYSS-SFCTHD-RNTMEALPACLLRDVAQEAL--GVAVIG 96 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEEETTCCCGGG-SCCHHH-HHHSEEEEESSGGGGHHHHH--TCSEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEccccCccchh-hhhhcc-CCcccceecCCHHHHHHhcc--CCCEEE
Confidence 4778999999999 899998888743 5666666532 2221 111111 11000001111223444333 346999
Q ss_pred EccccccCHHHHHHHHHhhc
Q psy2887 496 LDEIEKANSDVFNILLQILD 515 (899)
Q Consensus 496 lDEid~~~~~~~~~Ll~~le 515 (899)
|||++-+ ++....+..+.+
T Consensus 97 IDEaQFf-k~~ve~~~~L~~ 115 (195)
T 1w4r_A 97 IDEGQFF-PDIVEFCEAMAN 115 (195)
T ss_dssp ESSGGGC-TTHHHHHHHHHH
T ss_pred EEchhhh-HHHHHHHHHHHH
Confidence 9999999 665555544444
No 279
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.67 E-value=0.00094 Score=68.58 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=25.4
Q ss_pred EEEEecCCCChHHHHHHHHHHHhc-cCCCceEEecc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIF-NNEESIIRIDM 454 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~-~~~~~~~~~~~ 454 (899)
.+.|.||+|+|||||++.++.... ..+...+.++.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 588999999999999999994332 33444444443
No 280
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.66 E-value=0.00098 Score=66.00 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=23.6
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l 37 (899)
..+..|+|+|+||+||||+++.|++.+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 334468999999999999999999988
No 281
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.66 E-value=0.0013 Score=63.21 Aligned_cols=24 Identities=42% Similarity=0.612 Sum_probs=22.5
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l 37 (899)
..|.|+||||+||||+++.||+.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999987
No 282
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.66 E-value=0.017 Score=60.58 Aligned_cols=94 Identities=18% Similarity=0.274 Sum_probs=53.0
Q ss_pred EEEEecCCCChHHHHHHHHHHHhcc-CCCceEEeccccccccc--ch---hhccCCCCCcccccccchhhHHHH-hCCCE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFN-NEESIIRIDMSEFIEKH--SI---SRLIGAPPGYIGYEEGGYLTEIVR-RKPYS 492 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~-~~~~~~~~~~~~~~~~~--~~---~~l~g~~~~~~g~~~~~~l~~~~~-~~~~~ 492 (899)
.++|+||+|+||||++..||..+.. .+.++..+++..+.... .+ ....|-+. +.... ...+...+. ...+.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~-~~~~~-~~~l~~al~~~~~~d 184 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPL-EVCYT-KEEFQQAKELFSEYD 184 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCC-CBCSS-HHHHHHHHHHGGGSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCe-EecCC-HHHHHHHHHHhcCCC
Confidence 7899999999999999999998864 56577666665432111 01 11112111 11111 122333332 24567
Q ss_pred EEEEccccccCH--HHHHHHHHhhc
Q psy2887 493 LILLDEIEKANS--DVFNILLQILD 515 (899)
Q Consensus 493 vl~lDEid~~~~--~~~~~Ll~~le 515 (899)
+++||-....+. .....|..++.
T Consensus 185 lvIiDT~G~~~~~~~~~~el~~~l~ 209 (296)
T 2px0_A 185 HVFVDTAGRNFKDPQYIDELKETIP 209 (296)
T ss_dssp EEEEECCCCCTTSHHHHHHHHHHSC
T ss_pred EEEEeCCCCChhhHHHHHHHHHHHh
Confidence 999996654443 34455555554
No 283
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.64 E-value=0.0014 Score=64.96 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=25.8
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEe
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRI 452 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~ 452 (899)
.|+|.|+||+||||+|+.|++.+ +.+++..
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l---~~~~i~~ 51 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL---GIPQIST 51 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---TCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCcEEeh
Confidence 68999999999999999999998 6665543
No 284
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.64 E-value=0.015 Score=61.66 Aligned_cols=41 Identities=20% Similarity=0.300 Sum_probs=33.4
Q ss_pred CceEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccc
Q psy2887 417 PYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF 457 (899)
Q Consensus 417 ~~~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~ 457 (899)
+...++|+||+|+||||++..||..+...+..+..+++.-+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 33478899999999999999999998766777777766543
No 285
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.63 E-value=0.0012 Score=65.31 Aligned_cols=30 Identities=27% Similarity=0.447 Sum_probs=26.2
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEe
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRI 452 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~ 452 (899)
.++|.||||+||||+|+.||+.+ +.+++..
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~l---~~~~i~~ 56 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARKL---NVPFIDL 56 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---TCCEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc---CCCEEcc
Confidence 69999999999999999999999 6666543
No 286
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.62 E-value=0.0013 Score=65.24 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=23.0
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l 37 (899)
...|+|+|+||+||||+++.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999988
No 287
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.61 E-value=0.0014 Score=62.79 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=25.6
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEe
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRI 452 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~ 452 (899)
.++|.||||+||||+|+.|++.+ +.+++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l---~~~~i~~ 32 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL---KYPIIKG 32 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH---CCCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCeeecC
Confidence 48899999999999999999998 6665443
No 288
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.60 E-value=0.0012 Score=67.92 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=20.8
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHH
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQ 35 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~ 35 (899)
...-+.|+||+|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 445678999999999999999984
No 289
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.60 E-value=0.0098 Score=59.04 Aligned_cols=91 Identities=10% Similarity=-0.037 Sum_probs=51.6
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccc---cccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE---FIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILL 496 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~---~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~l 496 (899)
..+++||.|+||||.+-..+......+.+++.+...- +. ....+++ |......+......+...+ .+..+|+|
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg-~~i~sr~-G~~~~a~~i~~~~di~~~~--~~~dvViI 96 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHD-RNTMEALPACLLRDVAQEA--LGVAVIGI 96 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC-------------CEEEEESSGGGGHHHH--TTCSEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccch-HHHHhhc-CCeeEEEecCCHHHHHHHh--ccCCEEEE
Confidence 4778999999999877777666666677776665221 11 1111221 3222111112223344444 44679999
Q ss_pred ccccccCHHHHHHHHHhhcC
Q psy2887 497 DEIEKANSDVFNILLQILDD 516 (899)
Q Consensus 497 DEid~~~~~~~~~Ll~~le~ 516 (899)
||+.-+.. ...+...+++
T Consensus 97 DEaQF~~~--v~el~~~l~~ 114 (234)
T 2orv_A 97 DEGQFFPD--IVEFCEAMAN 114 (234)
T ss_dssp SSGGGCTT--HHHHHHHHHH
T ss_pred Echhhhhh--HHHHHHHHHh
Confidence 99999974 5666677764
No 290
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.59 E-value=0.0019 Score=62.46 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=19.6
Q ss_pred eEEEcCCCCcHH-HHHHHHHHHHHc
Q psy2887 16 PVLIGEPGVGKT-AIVEGLAQRIIN 39 (899)
Q Consensus 16 iLL~GppGtGKT-tla~~la~~l~~ 39 (899)
.+++||.|+||| .|.+++.+....
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~ 47 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIA 47 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHc
Confidence 356899999999 888888877644
No 291
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.58 E-value=0.0042 Score=64.99 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.6
Q ss_pred EEEEecCCCChHHHHHHHHHHHhc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIF 443 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~ 443 (899)
.++++||||+|||||++.++..+.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998663
No 292
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.58 E-value=0.006 Score=62.01 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=21.1
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l 37 (899)
.+++++||+|+|||.++.+++..+
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 459999999999999999888765
No 293
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.56 E-value=0.0013 Score=67.67 Aligned_cols=32 Identities=25% Similarity=0.292 Sum_probs=27.5
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEeh
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 56 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~ 56 (899)
.++|+|||||||||+|+.||+.+ +..++..|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~----------~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET----------GWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----------CCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcC----------CCeEEeccH
Confidence 47899999999999999999998 777776654
No 294
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.55 E-value=0.0014 Score=62.68 Aligned_cols=30 Identities=20% Similarity=0.484 Sum_probs=26.5
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEe
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRI 452 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~ 452 (899)
+++|.|+|||||||+|+.||+.+ +.+++..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~l---g~~~id~ 38 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLAL---KLEVLDT 38 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH---TCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCCEEEC
Confidence 79999999999999999999998 7666543
No 295
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.55 E-value=0.027 Score=59.97 Aligned_cols=34 Identities=29% Similarity=0.357 Sum_probs=27.7
Q ss_pred eEEEEecCCCChHHHHHHHHHHHhccCCCceEEe
Q psy2887 419 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRI 452 (899)
Q Consensus 419 ~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~ 452 (899)
..+.|.||+|+||||+++.||..+...+..+...
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~ 163 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIA 163 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEE
Confidence 3788999999999999999999886655555433
No 296
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.53 E-value=0.0012 Score=63.66 Aligned_cols=29 Identities=24% Similarity=0.539 Sum_probs=25.0
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIR 451 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~ 451 (899)
.++|.||||+||||+|+.||+.+ +.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l---~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL---DLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH---TCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc---CCCEEc
Confidence 48999999999999999999998 655543
No 297
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.52 E-value=0.0011 Score=65.12 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=22.7
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l 37 (899)
+..|+|.|+||+||||+++.|+..+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 3468999999999999999999988
No 298
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.50 E-value=0.0057 Score=70.64 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=24.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcC
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIING 40 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~ 40 (899)
.+.++++|||||||||++.+++..+...
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 4578999999999999999999887543
No 299
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.46 E-value=0.0016 Score=63.38 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=21.2
Q ss_pred EEEEecCCCChHHHHHHHHHHH
Q psy2887 420 SFMFLGPTGVGKTELCKTLSAC 441 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~ 441 (899)
.++|+|+|||||||+++.|++.
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6999999999999999999998
No 300
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.46 E-value=0.0015 Score=65.71 Aligned_cols=25 Identities=40% Similarity=0.640 Sum_probs=23.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l 37 (899)
+..|+|.|+||+||||+++.||+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999999998
No 301
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.46 E-value=0.0016 Score=62.52 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=22.1
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l 37 (899)
.|+|+|+||+||||+++.|++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999998
No 302
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.45 E-value=0.0015 Score=64.16 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=23.4
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l 37 (899)
++..|+|.|+||+||||+++.|++.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999999988
No 303
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.43 E-value=0.0028 Score=61.06 Aligned_cols=24 Identities=17% Similarity=0.505 Sum_probs=22.2
Q ss_pred eEEEEecCCCChHHHHHHHHHHHh
Q psy2887 419 GSFMFLGPTGVGKTELCKTLSACI 442 (899)
Q Consensus 419 ~~ill~GppGtGKT~lA~~la~~l 442 (899)
..++|.||||+||||+++.|+..+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh
Confidence 368899999999999999999987
No 304
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.42 E-value=0.0018 Score=64.54 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=22.7
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l 37 (899)
+++.-|+|.||||+||+|.|+.|++.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 333456778999999999999999988
No 305
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.42 E-value=0.0077 Score=61.20 Aligned_cols=92 Identities=15% Similarity=0.222 Sum_probs=49.8
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEec-cccccccc--chhhccCCC-CC-cccccc---------cchhhHH
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRID-MSEFIEKH--SISRLIGAP-PG-YIGYEE---------GGYLTEI 485 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~-~~~~~~~~--~~~~l~g~~-~~-~~g~~~---------~~~l~~~ 485 (899)
.++++||+|+|||.+|.+++..+ +.+++.+- ..++.... .... +|.. .+ +.|... -..+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~-~~~~~v~~~~g~~~~~~~i~v~T~~~l~~~ 185 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGI-FGEEYVGEFSGRIKELKPLTVSTYDSAYVN 185 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHS---CSCEEEEESSHHHHHHHHHHHGG-GCGGGEEEESSSCBCCCSEEEEEHHHHHHT
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh-CCCCeEEEEeCCCCCcCCEEEEeHHHHHhh
Confidence 48999999999999999888876 44544443 22332211 1111 1111 00 000000 0112111
Q ss_pred HHh--CCCEEEEEccccccCHHHHHHHHHhhc
Q psy2887 486 VRR--KPYSLILLDEIEKANSDVFNILLQILD 515 (899)
Q Consensus 486 ~~~--~~~~vl~lDEid~~~~~~~~~Ll~~le 515 (899)
... ...++|+|||++.+.......++..+.
T Consensus 186 ~~~~~~~~~llIiDEaH~l~~~~~~~i~~~~~ 217 (237)
T 2fz4_A 186 AEKLGNRFMLLIFDEVHHLPAESYVQIAQMSI 217 (237)
T ss_dssp HHHHTTTCSEEEEECSSCCCTTTHHHHHHTCC
T ss_pred HHHhcccCCEEEEECCccCCChHHHHHHHhcc
Confidence 111 346799999999998776666655543
No 306
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.40 E-value=0.0018 Score=62.44 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=22.6
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l 37 (899)
...++|+||||+||||+++.|++.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4468999999999999999999987
No 307
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.39 E-value=0.0018 Score=62.94 Aligned_cols=29 Identities=17% Similarity=0.446 Sum_probs=25.4
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIR 451 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~ 451 (899)
.++|.|+||+||||+|+.|++.+ +.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l---g~~~id 32 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL---GVGLLD 32 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH---TCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHc---CCCEEe
Confidence 38999999999999999999998 666554
No 308
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.39 E-value=0.0017 Score=62.94 Aligned_cols=29 Identities=34% Similarity=0.475 Sum_probs=25.2
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIR 451 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~ 451 (899)
.++|+|+||+||||+++.|++.+ +..++.
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~---~~~~~~ 41 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKS---GLKYIN 41 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH---CCEEEE
T ss_pred eEEEEeCCCCCHHHHHHHHHHHh---CCeEEE
Confidence 58999999999999999999998 655544
No 309
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.37 E-value=0.0043 Score=63.83 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=23.6
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l 37 (899)
..+..++|+|+||+||||+++.|++.+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 334568999999999999999999987
No 310
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.37 E-value=0.0023 Score=65.81 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=27.2
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDM 454 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~ 454 (899)
.+++.||||+||||+|+.||+.+ +..++..|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~---~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET---GWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---CCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcC---CCeEEeccH
Confidence 48899999999999999999998 666665554
No 311
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.35 E-value=0.0019 Score=62.09 Aligned_cols=23 Identities=26% Similarity=0.690 Sum_probs=21.8
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACI 442 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l 442 (899)
.+.|.||||+||||+++.||..+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 312
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.35 E-value=0.01 Score=60.69 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=20.8
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQR 36 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~ 36 (899)
.-+|+|+|.||+|||||+.++.+.
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 347999999999999999988754
No 313
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.34 E-value=0.0014 Score=65.61 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=21.6
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l 37 (899)
+|+|+||||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 314
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.33 E-value=0.0017 Score=65.10 Aligned_cols=23 Identities=39% Similarity=0.653 Sum_probs=21.7
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l 37 (899)
+|+|+||||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 315
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.33 E-value=0.0057 Score=66.67 Aligned_cols=86 Identities=20% Similarity=0.347 Sum_probs=49.2
Q ss_pred eEEEEecCCCChHHHHHHHHHHHhccC-CCceEEeccc-ccccccchhhccCCCCCcccc-----cc---cchhhHHHHh
Q psy2887 419 GSFMFLGPTGVGKTELCKTLSACIFNN-EESIIRIDMS-EFIEKHSISRLIGAPPGYIGY-----EE---GGYLTEIVRR 488 (899)
Q Consensus 419 ~~ill~GppGtGKT~lA~~la~~l~~~-~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~g~-----~~---~~~l~~~~~~ 488 (899)
..++++||+|+||||+.++|+..+... .+.++.+..+ ++.. ....+++.. .. ...+...++.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~--------~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~ 208 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF--------KHKKSIVNQREVGEDTKSFADALRAALRE 208 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCC--------CCSSSEEEEEEBTTTBSCSHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhh--------ccCceEEEeeecCCCHHHHHHHHHHHhhh
Confidence 469999999999999999999988543 4555444321 1100 000111111 11 1223444444
Q ss_pred CCCEEEEEccccccCHHHHHHHHHhhc
Q psy2887 489 KPYSLILLDEIEKANSDVFNILLQILD 515 (899)
Q Consensus 489 ~~~~vl~lDEid~~~~~~~~~Ll~~le 515 (899)
.+.+|++||+- ++.....+++...
T Consensus 209 -~pd~illdE~~--d~e~~~~~l~~~~ 232 (372)
T 2ewv_A 209 -DPDVIFVGEMR--DLETVETALRAAE 232 (372)
T ss_dssp -CCSEEEESCCC--SHHHHHHHHHHHT
T ss_pred -CcCEEEECCCC--CHHHHHHHHHHHh
Confidence 56899999996 4444444455443
No 316
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.32 E-value=0.0017 Score=62.46 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.1
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l 37 (899)
.|+|+||||+||||+++.| ..+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 5889999999999999999 666
No 317
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.32 E-value=0.002 Score=62.82 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=22.3
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l 37 (899)
..|+|+|+||+||||+++.|++.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999988
No 318
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.32 E-value=0.0018 Score=61.87 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=21.8
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l 37 (899)
.|+|+|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 319
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.31 E-value=0.0088 Score=65.54 Aligned_cols=25 Identities=32% Similarity=0.318 Sum_probs=20.5
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l 37 (899)
..-++|+||||+|||||++.++-..
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHh
Confidence 4457899999999999999876443
No 320
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.31 E-value=0.013 Score=65.96 Aligned_cols=73 Identities=14% Similarity=0.151 Sum_probs=47.5
Q ss_pred EEEEEccccccccCCCCCchhhHHHhhhhhhc---CCceEEEEecChhHHHHhhhcCHHHHhcccc-ccccCCCHHHHHH
Q psy2887 87 IIIFIDELHTMIGTGKVEGSIDAGNMLKPELS---RGELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETIS 162 (899)
Q Consensus 87 ~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~---~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~-i~l~~p~~~e~~~ 162 (899)
.+++|||+..++... ...+.+.+..+.. .-.+.+|.+|..+. .-.++..++..|.. |.|...+..+...
T Consensus 299 ivlvIDE~~~ll~~~----~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~---~dvl~~~i~~n~~~RI~lrv~s~~dsr~ 371 (512)
T 2ius_A 299 IVVLVDEFADLMMTV----GKKVEELIARLAQKARAAGIHLVLATQRPS---VDVITGLIKANIPTRIAFTVSSKIDSRT 371 (512)
T ss_dssp EEEEEETHHHHHHHH----HHHHHHHHHHHHHHCGGGTEEEEEEESCCC---TTTSCHHHHHHCCEEEEECCSSHHHHHH
T ss_pred EEEEEeCHHHHHhhh----hHHHHHHHHHHHHHhhhCCcEEEEEecCCc---cccccHHHHhhcCCeEEEEcCCHHHHHH
Confidence 489999999887521 1233334433332 22577777777654 11467788888864 8888888888888
Q ss_pred HHHh
Q psy2887 163 ILRG 166 (899)
Q Consensus 163 il~~ 166 (899)
++..
T Consensus 372 ilg~ 375 (512)
T 2ius_A 372 ILDQ 375 (512)
T ss_dssp HHSS
T ss_pred hcCC
Confidence 8753
No 321
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.30 E-value=0.012 Score=62.16 Aligned_cols=33 Identities=30% Similarity=0.482 Sum_probs=27.8
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEeccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMS 455 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~ 455 (899)
.+++.||+|+|||+||..||+.+ +..++..|--
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l---~~eiIs~Ds~ 74 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHF---PLEVINSDKM 74 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTS---CEEEEECCSS
T ss_pred eEEEECCCCCCHHHHHHHHHHHC---CCcEEccccc
Confidence 58999999999999999999998 6666665543
No 322
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.30 E-value=0.0083 Score=64.75 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=21.7
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l 37 (899)
..-+.|+||||+|||||++.++..+
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457899999999999999999876
No 323
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.29 E-value=0.0036 Score=61.24 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=22.2
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHH
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRII 38 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l~ 38 (899)
.|+|.|+||+||||+++.|++.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999884
No 324
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.28 E-value=0.0089 Score=69.75 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=21.1
Q ss_pred EEEEecCCCChHHHHHHHHHHHhc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIF 443 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~ 443 (899)
.+++.||||||||+++..+...+.
T Consensus 166 ~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 166 ISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHH
Confidence 599999999999999988887774
No 325
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.27 E-value=0.0035 Score=67.16 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=22.3
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l 37 (899)
...-++|+||||+|||+++..+|...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 34467899999999999999999875
No 326
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.27 E-value=0.0023 Score=62.61 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=28.5
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE 456 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~ 456 (899)
.|+|.|+||+||||+|+.|++.+-..+.++..++..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~ 39 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGD 39 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECCh
Confidence 4899999999999999999999843444465554433
No 327
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.27 E-value=0.0024 Score=62.55 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=25.2
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIR 451 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~ 451 (899)
.++|.|+||+||||+|+.|++.+ +.+++.
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l---~~~~i~ 35 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGL---RLPLLS 35 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---TCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCeEec
Confidence 58999999999999999999988 655554
No 328
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.26 E-value=0.016 Score=60.55 Aligned_cols=29 Identities=28% Similarity=0.393 Sum_probs=24.0
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcC
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIING 40 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~ 40 (899)
...-++|+||||+|||||+..++..+..+
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~g 57 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAGG 57 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 34467899999999999999999876543
No 329
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.26 E-value=0.0032 Score=62.24 Aligned_cols=26 Identities=38% Similarity=0.580 Sum_probs=23.2
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l 37 (899)
.+..++|+||||+||||+++.|++.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 34568899999999999999999987
No 330
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.26 E-value=0.0089 Score=64.51 Aligned_cols=37 Identities=32% Similarity=0.408 Sum_probs=28.9
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccC------CCceEEecccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNN------EESIIRIDMSE 456 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~------~~~~~~~~~~~ 456 (899)
.+.++||||+|||+|++.++...... +..++.++..+
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 58899999999999999999876211 24667777654
No 331
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.26 E-value=0.0023 Score=64.94 Aligned_cols=25 Identities=36% Similarity=0.590 Sum_probs=23.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l 37 (899)
..+|+|.|+||+||||+++.||+.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999999998
No 332
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.25 E-value=0.021 Score=55.37 Aligned_cols=29 Identities=24% Similarity=0.240 Sum_probs=25.6
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcC
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIING 40 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~ 40 (899)
.+++|++++++|.||||+|-.+|-+....
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~ 55 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGH 55 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHT
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 56799999999999999999999887654
No 333
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.25 E-value=0.0022 Score=62.82 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=22.2
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l 37 (899)
..|+|.|+||+||||+++.|++.+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999988
No 334
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.25 E-value=0.0061 Score=62.81 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=23.8
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRII 38 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~ 38 (899)
.....++|+||+|+||||+++++++.+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 3445688999999999999999998774
No 335
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.24 E-value=0.0018 Score=63.41 Aligned_cols=25 Identities=40% Similarity=0.551 Sum_probs=21.6
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l 37 (899)
+..++|+||||+||||+++.|++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcc
Confidence 3468899999999999999999753
No 336
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.22 E-value=0.0022 Score=62.78 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=22.3
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l 37 (899)
..|+|+|+||+||||+++.|++.+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999988
No 337
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.22 E-value=0.0021 Score=64.54 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=22.6
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l 37 (899)
..|+|.|+||+||||+++.||+.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999998
No 338
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.21 E-value=0.0028 Score=63.71 Aligned_cols=29 Identities=21% Similarity=0.469 Sum_probs=25.1
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIR 451 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~ 451 (899)
.++|.|+||+||||+|+.||+.+ +.+++.
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l---~~~~i~ 34 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERF---HAAHLA 34 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---CCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CceEEe
Confidence 69999999999999999999998 555443
No 339
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.21 E-value=0.0025 Score=61.12 Aligned_cols=29 Identities=17% Similarity=0.438 Sum_probs=25.0
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIR 451 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~ 451 (899)
.++|.|+||+||||+|+.|++.+ +.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l---g~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL---GYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH---TCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCcEEc
Confidence 48999999999999999999998 655543
No 340
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.21 E-value=0.003 Score=62.50 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=21.6
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l 37 (899)
.|+|.||||+||+|.|+.||+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999988
No 341
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.21 E-value=0.013 Score=56.79 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=20.7
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACI 442 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l 442 (899)
+|+|.||+|+|||||++.|.+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 38999999999999999998775
No 342
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.21 E-value=0.0023 Score=63.01 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=22.4
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l 37 (899)
..|+|.|+||+||||+++.|++.+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999988
No 343
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.20 E-value=0.0027 Score=62.06 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.8
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHH
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRII 38 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l~ 38 (899)
..|+|.|+||+||||+++.|+..+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999884
No 344
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.20 E-value=0.0012 Score=63.61 Aligned_cols=109 Identities=8% Similarity=-0.001 Sum_probs=0.0
Q ss_pred EEEecCCCChHHHHHH------------HHHHHhccCCCceEEec--------ccccccccchhhccCCCCCcccccccc
Q psy2887 421 FMFLGPTGVGKTELCK------------TLSACIFNNEESIIRID--------MSEFIEKHSISRLIGAPPGYIGYEEGG 480 (899)
Q Consensus 421 ill~GppGtGKT~lA~------------~la~~l~~~~~~~~~~~--------~~~~~~~~~~~~l~g~~~~~~g~~~~~ 480 (899)
+.|.||+|+||||+++ .+...++.......... .....................|....+
T Consensus 12 ~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s~g~~qr 91 (171)
T 4gp7_A 12 VVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDATNVQESARKPL 91 (171)
T ss_dssp EEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEEEESCCCSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHH
Q ss_pred hhhHHHHhCCCEEEEEccc-cccCHH----------------HHHHHHHhhcCCceecCCCceEecCCeEEEEecC
Q psy2887 481 YLTEIVRRKPYSLILLDEI-EKANSD----------------VFNILLQILDDGRLTDNRGRTINFRNTIIVMTSN 539 (899)
Q Consensus 481 ~l~~~~~~~~~~vl~lDEi-d~~~~~----------------~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn 539 (899)
......-...+.+|++||. ..+.+. ....+.+.+.+ ....+..+|++|.
T Consensus 92 v~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~----------l~~~g~tvi~vtH 157 (171)
T 4gp7_A 92 IEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKG----------LQREGFRYVYILN 157 (171)
T ss_dssp HHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTT----------HHHHTCSEEEEEC
T ss_pred HHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhh----------HHhcCCcEEEEeC
No 345
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.20 E-value=0.0044 Score=60.32 Aligned_cols=40 Identities=30% Similarity=0.300 Sum_probs=29.6
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhh
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIAL 58 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~ 58 (899)
.+..|+|+|+||+||||+++.++..+... +..+..++...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~-------~~~~~~~~~d~ 51 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKE-------GYRVEVLDGDW 51 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT-------TCCEEEEEHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc-------CCeEEEeeHHH
Confidence 44568899999999999999999988533 34455555433
No 346
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.19 E-value=0.003 Score=62.44 Aligned_cols=29 Identities=21% Similarity=0.441 Sum_probs=24.8
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIR 451 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~ 451 (899)
.++|.|+||+||||+|+.|++.+ +..++.
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l---g~~~i~ 48 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC---GYPFIE 48 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH---TCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCEEEe
Confidence 58999999999999999999998 554443
No 347
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.19 E-value=0.0026 Score=62.21 Aligned_cols=35 Identities=14% Similarity=0.340 Sum_probs=28.1
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF 457 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~ 457 (899)
.++|.||||+||||+++.|+..+ +...+.++..++
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~~---~~g~i~i~~d~~ 45 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANLP---GVPKVHFHSDDL 45 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCS---SSCEEEECTTHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcc---CCCeEEEcccch
Confidence 68899999999999999999874 455666665544
No 348
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.19 E-value=0.0023 Score=62.12 Aligned_cols=28 Identities=36% Similarity=0.508 Sum_probs=21.0
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESII 450 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~ 450 (899)
.++|.|+||+||||+|+.|++.+ +.+++
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l---~~~~i 34 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERL---PGSFV 34 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHS---TTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCCEE
Confidence 58999999999999999999998 66655
No 349
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.18 E-value=0.0024 Score=63.25 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=21.9
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l 37 (899)
..|+|+|+||+||||+++.|++.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 358899999999999999999987
No 350
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.17 E-value=0.018 Score=63.39 Aligned_cols=78 Identities=17% Similarity=0.103 Sum_probs=47.9
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhc-------------C-----cccCchHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA-------------G-----TKYRGEFEDRLK 74 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~-------------~-----~~~~g~~~~~l~ 74 (899)
+.-|+++|++|+||||++..||..+... +..+..+++..... + .....+....+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~-------G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~ 172 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKR-------GYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAK 172 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT-------TCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHC-------CCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHH
Confidence 4567889999999999999999988654 44454444321100 0 001122333455
Q ss_pred HHHHHHHhcCCCEEEEEccccccc
Q psy2887 75 KILKEISNNQKDIIIFIDELHTMI 98 (899)
Q Consensus 75 ~~~~~~~~~~~~~iL~iDEi~~l~ 98 (899)
..+..+... +.-+++||.+..+.
T Consensus 173 ~al~~a~~~-~~DvVIIDTaGrl~ 195 (443)
T 3dm5_A 173 EGVDYFKSK-GVDIIIVDTAGRHK 195 (443)
T ss_dssp HHHHHHHHT-TCSEEEEECCCCSS
T ss_pred HHHHHHHhC-CCCEEEEECCCccc
Confidence 666666542 24499999887653
No 351
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.17 E-value=0.0031 Score=60.19 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=25.1
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIR 451 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~ 451 (899)
.++|.|+||+||||+|+.|++.+ +.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l---~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL---NIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH---TCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCCEEE
Confidence 48999999999999999999998 655553
No 352
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.16 E-value=0.0022 Score=64.88 Aligned_cols=24 Identities=25% Similarity=0.592 Sum_probs=22.4
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l 37 (899)
..|+|.|+||+||||+++.||+.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999987
No 353
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.16 E-value=0.011 Score=63.65 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=21.7
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l 37 (899)
..-++|+||||+|||+++..+|...
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4457899999999999999999864
No 354
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.16 E-value=0.0063 Score=61.80 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=21.9
Q ss_pred EEEEecCCCChHHHHHHHHHHHhc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIF 443 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~ 443 (899)
.+.+.||+|+|||||.++|+..+.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 588999999999999999998873
No 355
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.14 E-value=0.0022 Score=64.60 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=23.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l 37 (899)
+..|+|.|+||+||||+++.||+.+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999998
No 356
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.14 E-value=0.0082 Score=62.63 Aligned_cols=98 Identities=19% Similarity=0.165 Sum_probs=54.3
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEEccc
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDEL 94 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi 94 (899)
-|++.||+|+|||+|+..||+.+ +..+++.|.-.+..+-. .|... .. -.+. .+-| =-|||..
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~----------~~~iis~Ds~QvYr~~~-igTak--p~--~~E~--~gvp-hhlid~~ 66 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL----------NGEVISGDSMQVYRGMD-IGTAK--IT--AEEM--DGVP-HHLIDIK 66 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT----------TEEEEECCGGGGBTTCC-TTTTC--CC--HHHH--TTCC-EESSSCB
T ss_pred EEEEECCCcCCHHHHHHHHHHhC----------ccceeecCcccceeeee-ecCCC--CC--HHHH--cCCC-EEEeccC
Confidence 47889999999999999999987 66777666544443221 11100 00 0111 1223 4567755
Q ss_pred cccccCCCCCchhhHHHhhhhhhcCCceEEEEecCh
Q psy2887 95 HTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTL 130 (899)
Q Consensus 95 ~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~ 130 (899)
+---.-....-..++...+....+++++.|+.-++.
T Consensus 67 ~~~e~~s~~~F~~~a~~~i~~i~~~gk~pIlVGGTg 102 (322)
T 3exa_A 67 DPSESFSVADFQDLATPLITEIHERGRLPFLVGGTG 102 (322)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEESCCH
T ss_pred ChhhhccHHHHHHHHHHHHHHHHhCCCcEEEEcCcH
Confidence 421110001112445666777778888776655543
No 357
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.14 E-value=0.012 Score=62.02 Aligned_cols=23 Identities=26% Similarity=0.609 Sum_probs=21.5
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACI 442 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l 442 (899)
.+.++||+|+|||||+++|+..+
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 58899999999999999999877
No 358
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.13 E-value=0.0029 Score=60.74 Aligned_cols=28 Identities=29% Similarity=0.409 Sum_probs=23.4
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIR 451 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~ 451 (899)
.++|.||||+||||+|+.| +.+ +.+++.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~---g~~~i~ 30 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER---GAKVIV 30 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT---TCEEEE
T ss_pred EEEEECCCCCCHHHHHHHH-HHC---CCcEEE
Confidence 4889999999999999999 766 555554
No 359
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.13 E-value=0.0026 Score=65.09 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=23.3
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l 37 (899)
.+..|+|+||||+||||+++.|++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34468999999999999999999988
No 360
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.12 E-value=0.0022 Score=62.29 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=18.7
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l 37 (899)
+..|+|.|+||+||||+++.|++.+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3468999999999999999999988
No 361
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.12 E-value=0.012 Score=60.05 Aligned_cols=122 Identities=16% Similarity=0.252 Sum_probs=0.0
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccc-----------------------------------------
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI----------------------------------------- 458 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~----------------------------------------- 458 (899)
.+.+.||+|+|||||.++|+..+ ....--+.++..++.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~ 115 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY-IPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKV 115 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTCTTCCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHHhccCCCCCHHHH
Q ss_pred ----cccchhhccCCCC------------CcccccccchhhHHHHhCCCEEEEEcccc-ccCHHHHHHHHHhhcCCceec
Q psy2887 459 ----EKHSISRLIGAPP------------GYIGYEEGGYLTEIVRRKPYSLILLDEIE-KANSDVFNILLQILDDGRLTD 521 (899)
Q Consensus 459 ----~~~~~~~l~g~~~------------~~~g~~~~~~l~~~~~~~~~~vl~lDEid-~~~~~~~~~Ll~~le~g~~~~ 521 (899)
....+..++...+ ...|....+.....+-...+.+|++||.- .+++.....+++.|.+
T Consensus 116 ~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~----- 190 (247)
T 2ff7_A 116 IYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK----- 190 (247)
T ss_dssp HHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHH-----
T ss_pred HHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH-----
Q ss_pred CCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEe
Q psy2887 522 NRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVF 582 (899)
Q Consensus 522 ~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f 582 (899)
-..+..+|++|. +.++...+|.++.+
T Consensus 191 ------~~~g~tviivtH-----------------------------~~~~~~~~d~v~~l 216 (247)
T 2ff7_A 191 ------ICKGRTVIIIAH-----------------------------RLSTVKNADRIIVM 216 (247)
T ss_dssp ------HHTTSEEEEECS-----------------------------SGGGGTTSSEEEEE
T ss_pred ------HcCCCEEEEEeC-----------------------------CHHHHHhCCEEEEE
No 362
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.12 E-value=0.0086 Score=62.41 Aligned_cols=98 Identities=18% Similarity=0.197 Sum_probs=53.7
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEEccc
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDEL 94 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi 94 (899)
-++|.||+|+|||+|+..+|+.+ +..+++.|.-.+..+-. .|.-. .. -.+.... | --|||.+
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~----------~~~iis~Ds~qvY~~~~-igTak--p~--~~E~~~v--~-hhlid~~ 73 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKIL----------PVELISVDSALIYKGMD-IGTAK--PN--AEELLAA--P-HRLLDIR 73 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS----------CEEEEECCTTTTBTTCC-TTTTC--CC--HHHHHHS--C-EETSSCB
T ss_pred EEEEECCCccCHHHHHHHHHHhC----------CCcEEeccccccccccc-ccCCC--CC--HHHHcCC--C-EEEeccC
Confidence 47789999999999999999988 67777776544433221 11000 00 0011111 2 3566655
Q ss_pred cccccCCCCCchhhHHHhhhhhhcCCceEEEEecCh
Q psy2887 95 HTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTL 130 (899)
Q Consensus 95 ~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~ 130 (899)
+---.-....-..++...+....+++++.++.-++.
T Consensus 74 ~~~e~~s~~~f~~~a~~~i~~i~~~g~~pilVGGTg 109 (316)
T 3foz_A 74 DPSQAYSAADFRRDALAEMADITAAGRIPLLVGGTM 109 (316)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CccccccHHHHHHHHHHHHHHHHhCCCcEEEEcCcH
Confidence 421110001112345566777778888766655554
No 363
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.11 E-value=0.0027 Score=61.80 Aligned_cols=23 Identities=35% Similarity=0.693 Sum_probs=21.9
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACI 442 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l 442 (899)
.++|.|+||+||||+|+.|++.+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999988
No 364
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.10 E-value=0.0078 Score=65.96 Aligned_cols=37 Identities=27% Similarity=0.374 Sum_probs=28.0
Q ss_pred EEEEecCCCChHHHHHHHHHHHhcc------CCCceEEecccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFN------NEESIIRIDMSE 456 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~------~~~~~~~~~~~~ 456 (899)
.++|+||||+|||+|++.++-.... .+...++++..+
T Consensus 180 i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 5899999999999999977644321 245678887765
No 365
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.10 E-value=0.0032 Score=63.04 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=25.1
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEe
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRI 452 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~ 452 (899)
.|+|.||||+||||+|+.|++.+ +.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~---~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY---GIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS---SCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCcEEeH
Confidence 48899999999999999999988 5555443
No 366
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.09 E-value=0.0037 Score=61.83 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=24.7
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIR 451 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~ 451 (899)
.|+|.|+||+||||+|+.|++.+ +..++.
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~---g~~~i~ 45 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDY---SFVHLS 45 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS---SCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CceEEe
Confidence 68999999999999999999988 554443
No 367
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.08 E-value=0.003 Score=66.29 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=22.7
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l 37 (899)
.+..++|.||||+||||+++.|+..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34468899999999999999999876
No 368
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.08 E-value=0.0038 Score=63.31 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=25.2
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIR 451 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~ 451 (899)
.++|.|+||+||||+|+.||+.+ +.+++.
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l---~~~~i~ 46 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNF---CVCHLA 46 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---TCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCceec
Confidence 69999999999999999999998 555443
No 369
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.08 E-value=0.0032 Score=61.77 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=25.1
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIR 451 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~ 451 (899)
.++|.|+||+||||+|+.|++.+ +.+++.
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l---~~~~i~ 39 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKY---GYTHLS 39 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH---CCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCeEEc
Confidence 58999999999999999999998 655543
No 370
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.08 E-value=0.0035 Score=62.68 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=24.8
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIR 451 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~ 451 (899)
.|+|.||||+||||+|+.|++.+ +.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~---~~~~i~ 30 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY---EIPHIS 30 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---CCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCcEee
Confidence 48899999999999999999988 655543
No 371
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.07 E-value=0.01 Score=66.78 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=23.4
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHc
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIIN 39 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~ 39 (899)
++.-++|.|+||+||||++..+|..+..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3445788999999999999999987753
No 372
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.07 E-value=0.0026 Score=63.66 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=21.8
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l 37 (899)
+|+|.|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 373
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.07 E-value=0.064 Score=60.82 Aligned_cols=72 Identities=14% Similarity=0.173 Sum_probs=52.3
Q ss_pred CEEEEEcccccc----CHHHHHHHHHhhcCCceecCCCceEecCCeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhh
Q psy2887 491 YSLILLDEIEKA----NSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKI 566 (899)
Q Consensus 491 ~~vl~lDEid~~----~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 566 (899)
+-+|+|||+..+ ...+...|.++...|+ ...+.+|++|..+.. +
T Consensus 344 ~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GR----------a~GIhLIlaTQRPs~----------------------d 391 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVGKKVEELIARIAQKAR----------AAGIHLILATQRPSV----------------------D 391 (574)
T ss_dssp EEEEEESCCTTHHHHTCHHHHHHHHHHHHHCT----------TTTEEEEEEESCCCT----------------------T
T ss_pred cEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHh----------hCCeEEEEEecCccc----------------------c
Confidence 359999999865 4566777777877765 346677888876552 1
Q ss_pred cCChhHhhccCeEEEecCCCHHHHHHHH
Q psy2887 567 YFRPEFINRIDDIIVFRYLNRKNILSIA 594 (899)
Q Consensus 567 ~~~~~l~~R~~~~i~f~~l~~~~~~~i~ 594 (899)
.++..+.+-|...|.|.--+..+...|+
T Consensus 392 ~I~~~Iran~~~RI~lrv~s~~Dsr~IL 419 (574)
T 2iut_A 392 VITGLIKANIPTRIAFQVSSKIDSRTIL 419 (574)
T ss_dssp TSCHHHHHTCCEEEEECCSCHHHHHHHH
T ss_pred cccHHHHhhhccEEEEEcCCHHHHHHhc
Confidence 2455577888888899988988887774
No 374
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.07 E-value=0.02 Score=63.69 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=28.6
Q ss_pred eEEEEecCCCChHHHHHHHHHHHhccCCCceEEecc
Q psy2887 419 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDM 454 (899)
Q Consensus 419 ~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~ 454 (899)
..++|.||+|+||||+++.|+..+...++.+...++
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~ 329 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAG 329 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred eEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecC
Confidence 478899999999999999999988655555544433
No 375
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.06 E-value=0.0082 Score=62.25 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.7
Q ss_pred EEEEecCCCChHHHHHHHHHHHhc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIF 443 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~ 443 (899)
.+.|.||+|+|||||.++|+..+.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 588999999999999999998773
No 376
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.06 E-value=0.0057 Score=59.60 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=21.6
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHcC
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRIING 40 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l~~~ 40 (899)
=.+++||+|+||||.+-.++.++...
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~ 35 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIA 35 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 45778999999999999988887543
No 377
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.05 E-value=0.0036 Score=61.30 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=24.4
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESII 450 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~ 450 (899)
.++|.|+||+||||+|+.|++.+ +.+++
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~---~~~~i 32 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKY---GYTHL 32 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---CCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCeEE
Confidence 58999999999999999999988 55543
No 378
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.03 E-value=0.0043 Score=61.24 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=27.8
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE 456 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~ 456 (899)
.+.|.||+|+||||++++|+..+...+...+.++...
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~ 63 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDN 63 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence 5889999999999999999999853343333555433
No 379
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.02 E-value=0.018 Score=58.00 Aligned_cols=123 Identities=17% Similarity=0.165 Sum_probs=0.0
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccccccc------------------------------chhhccCC
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKH------------------------------SISRLIGA 469 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~------------------------------~~~~l~g~ 469 (899)
.+.+.||+|+|||||.++|+..+....+.+..-..-.+.... .+...+..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~ 115 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISK 115 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHh
Q ss_pred CC------------CcccccccchhhHHHHhCCCEEEEEcccc-ccCHHHHHHHHHh-hcCCceecCCCceEecCCeEEE
Q psy2887 470 PP------------GYIGYEEGGYLTEIVRRKPYSLILLDEIE-KANSDVFNILLQI-LDDGRLTDNRGRTINFRNTIIV 535 (899)
Q Consensus 470 ~~------------~~~g~~~~~~l~~~~~~~~~~vl~lDEid-~~~~~~~~~Ll~~-le~g~~~~~~g~~~~~~~~~iI 535 (899)
.+ ...|....+.....+-...+.++++||.- .+++.....+.+. +.. ...+..+|
T Consensus 116 ~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~-----------~~~~~tvi 184 (229)
T 2pze_A 116 FAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK-----------LMANKTRI 184 (229)
T ss_dssp STTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCC-----------CTTTSEEE
T ss_pred CcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHH-----------hhCCCEEE
Q ss_pred EecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEe
Q psy2887 536 MTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVF 582 (899)
Q Consensus 536 ~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f 582 (899)
++|. +.++...+|.++.+
T Consensus 185 ~vtH-----------------------------~~~~~~~~d~v~~l 202 (229)
T 2pze_A 185 LVTS-----------------------------KMEHLKKADKILIL 202 (229)
T ss_dssp EECC-----------------------------CHHHHHHCSEEEEE
T ss_pred EEcC-----------------------------ChHHHHhCCEEEEE
No 380
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.01 E-value=0.0073 Score=64.62 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=22.7
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l 37 (899)
+..++++||+|+||||+++++++.+
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999999876
No 381
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.01 E-value=0.0037 Score=61.96 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=22.4
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l 37 (899)
+..++|+||||+||||+++.|+..+
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3468999999999999999999876
No 382
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.01 E-value=0.0039 Score=63.73 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=23.6
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l 37 (899)
...|.|+|++|+||||+++.||+.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999999998
No 383
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.01 E-value=0.0022 Score=67.82 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=29.5
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhh
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALL 59 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l 59 (899)
..|+|+||+|||||+|+..||+.+ +..++..|.-.+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l----------~~eiIs~Ds~qv 76 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF----------PLEVINSDKMQV 76 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS----------CEEEEECCSSTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC----------CCcEEccccccc
Confidence 368899999999999999999988 677776665433
No 384
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.01 E-value=0.003 Score=61.66 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=21.9
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACI 442 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l 442 (899)
.++|.||||+||||+++.|++.+
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999988
No 385
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.00 E-value=0.0068 Score=65.60 Aligned_cols=24 Identities=29% Similarity=0.609 Sum_probs=21.8
Q ss_pred EEEEecCCCChHHHHHHHHHHHhc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIF 443 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~ 443 (899)
.+.|.||+|||||||.++|+..+.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Confidence 478999999999999999998873
No 386
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.99 E-value=0.0047 Score=61.10 Aligned_cols=34 Identities=29% Similarity=0.527 Sum_probs=26.7
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 458 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~ 458 (899)
.++|.||||+||+|.|+.||+.+ +. ..++..++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~---g~--~~istGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK---GF--VHISTGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---CC--EEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH---CC--eEEcHHHHH
Confidence 48899999999999999999998 44 444444443
No 387
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.98 E-value=0.01 Score=60.54 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=24.8
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIR 451 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~ 451 (899)
.|+|.||||+||||+|+.|++.+ +.+.+.
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~---g~~~is 59 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSH---CYCHLS 59 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---CCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCeEEe
Confidence 69999999999999999999988 544443
No 388
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.95 E-value=0.0033 Score=60.67 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.8
Q ss_pred CeEEEcCCCCcHHHHHHHHHH
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQ 35 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~ 35 (899)
.|+|.|+||+||||+++.|++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 588999999999999999998
No 389
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.95 E-value=0.0034 Score=62.01 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=23.6
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHH
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRII 38 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~ 38 (899)
.+..+.|+||+|+||||++++|++.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345688999999999999999999884
No 390
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.95 E-value=0.004 Score=61.25 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=22.0
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACI 442 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l 442 (899)
.++|.|+||+||||+|+.|++.+
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999998
No 391
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.94 E-value=0.032 Score=59.26 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=22.6
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHc
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIIN 39 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~ 39 (899)
..-++|.|+||+|||+++..+|.....
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~ 94 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSD 94 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 345788999999999999999977644
No 392
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.94 E-value=0.0041 Score=62.35 Aligned_cols=29 Identities=17% Similarity=0.426 Sum_probs=25.2
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIR 451 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~ 451 (899)
.++|.|+||+||||+|+.||+.+ +.+++.
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l---~~~~i~ 35 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY---GLAHLS 35 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH---CCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CceEEe
Confidence 58999999999999999999998 655544
No 393
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.93 E-value=0.0093 Score=64.03 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.8
Q ss_pred EEEEecCCCChHHHHHHHHHHHhc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIF 443 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~ 443 (899)
.+.|.||+|||||||.++|+..+.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 488999999999999999998873
No 394
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.92 E-value=0.0074 Score=58.69 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=28.7
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDM 454 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~ 454 (899)
.++|.|+||+||||+++.++..+...+.++..++.
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 68899999999999999999998555555655554
No 395
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.90 E-value=0.0044 Score=60.54 Aligned_cols=29 Identities=21% Similarity=0.317 Sum_probs=24.8
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIR 451 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~ 451 (899)
.++|.|+||+||||+|+.|++.+ +.+++.
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l---~~~~i~ 36 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDF---GWVHLS 36 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---CCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCeEee
Confidence 58999999999999999999988 554443
No 396
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.89 E-value=0.02 Score=59.71 Aligned_cols=80 Identities=14% Similarity=0.196 Sum_probs=45.9
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhc-------Ccc-------cCchHHHHHHHHHHHH
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA-------GTK-------YRGEFEDRLKKILKEI 80 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~-------~~~-------~~g~~~~~l~~~~~~~ 80 (899)
-++++||||+|||||+..++....... .+..++.++...-.. |-. .....+...-.+.+.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g-----~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQY-----PDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHC-----TTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC-----CCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 478999999999999887776654310 033455555432110 000 0112222202333443
Q ss_pred --HhcCCCEEEEEcccccccc
Q psy2887 81 --SNNQKDIIIFIDELHTMIG 99 (899)
Q Consensus 81 --~~~~~~~iL~iDEi~~l~~ 99 (899)
.+...|.+++||=+..|++
T Consensus 105 ~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HTCCTTCCEEEEEECSTTCBC
T ss_pred HHhhccCceEEEEeccccccc
Confidence 2345689999999999985
No 397
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.88 E-value=0.0041 Score=62.79 Aligned_cols=29 Identities=17% Similarity=0.367 Sum_probs=24.9
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIR 451 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~ 451 (899)
.++|.|+||+||||+|+.|++.+ +.+++.
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l---~~~~i~ 37 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHF---ELKHLS 37 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS---SSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCeEEe
Confidence 58999999999999999999988 555443
No 398
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.87 E-value=0.012 Score=63.70 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=21.3
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACI 442 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l 442 (899)
.+.|.||+|||||||.++||..+
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 48899999999999999999877
No 399
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.86 E-value=0.0046 Score=63.17 Aligned_cols=29 Identities=24% Similarity=0.427 Sum_probs=25.2
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIR 451 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~ 451 (899)
.+.|.|++|+||||+++.||+.+ +.+++.
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~l---g~~~~d 78 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSL---GYTFFD 78 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH---TCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCcEEe
Confidence 49999999999999999999998 655543
No 400
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.86 E-value=0.0031 Score=60.93 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=20.0
Q ss_pred EEEEecCCCChHHHHHHHHHH
Q psy2887 420 SFMFLGPTGVGKTELCKTLSA 440 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~ 440 (899)
.++|.|+||+||||+|+.|++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 588999999999999999998
No 401
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.86 E-value=0.0055 Score=60.51 Aligned_cols=23 Identities=22% Similarity=0.559 Sum_probs=21.8
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l 37 (899)
.|+|.|+||+||||+++.|++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 48899999999999999999998
No 402
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.86 E-value=0.01 Score=63.74 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.7
Q ss_pred EEEEecCCCChHHHHHHHHHHHhc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIF 443 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~ 443 (899)
.+.|.||+|||||||.++|+..+.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 488999999999999999998773
No 403
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.86 E-value=0.0061 Score=60.70 Aligned_cols=34 Identities=21% Similarity=0.454 Sum_probs=26.8
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 458 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~ 458 (899)
.|+|.||||+||+|.|+.|++.+ + +..++..++.
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~---g--~~hIstGdll 64 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKF---H--FNHLSSGDLL 64 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHH---C--CEEECHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH---C--CceEcHHHHH
Confidence 57889999999999999999998 4 4455554443
No 404
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.85 E-value=0.014 Score=57.53 Aligned_cols=37 Identities=24% Similarity=0.273 Sum_probs=29.1
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE 456 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~ 456 (899)
.+.+.||+|+||||+++.|+..+...+.+++.++...
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 6889999999999999999998854456666554433
No 405
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.85 E-value=0.0064 Score=61.25 Aligned_cols=24 Identities=21% Similarity=0.428 Sum_probs=22.3
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l 37 (899)
..|.|+||||+||||+++.|++.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999988
No 406
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.85 E-value=0.0049 Score=61.58 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=24.9
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIR 451 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~ 451 (899)
.++|.|+||+||||+|+.|++.+ +.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~---g~~~i~ 30 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY---GIPQIS 30 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---CCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCeEEe
Confidence 48999999999999999999988 655544
No 407
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.85 E-value=0.0071 Score=58.42 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=29.6
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEeccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMS 455 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~ 455 (899)
.+.|.|++|+||||+++.|+..+...+.+++.++..
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 588999999999999999999885556677766643
No 408
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.84 E-value=0.0061 Score=60.14 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=21.8
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACI 442 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l 442 (899)
.+.|.||+|+||||+++.|+..+
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 58899999999999999999988
No 409
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.83 E-value=0.017 Score=62.26 Aligned_cols=37 Identities=30% Similarity=0.242 Sum_probs=29.6
Q ss_pred EEEEecCCCChHHHHHHHHHHHhcc------CCCceEEecccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFN------NEESIIRIDMSE 456 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~------~~~~~~~~~~~~ 456 (899)
.++++||||+|||++|..++..... .+.+++.++...
T Consensus 124 i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 5889999999999999999987422 356778887765
No 410
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.82 E-value=0.0062 Score=61.29 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=21.7
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l 37 (899)
.|+|.|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 411
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.80 E-value=0.0068 Score=61.58 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=24.4
Q ss_pred ccCCCCCCCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 7 KENFYFTSNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 7 ~~~~~~~~~iLL~GppGtGKTtla~~la~~l 37 (899)
.+....+..|.|+|++|+||||+++.|++.+
T Consensus 10 ~~~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 10 DDDKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp ----CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3444555678999999999999999999988
No 412
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.79 E-value=0.0054 Score=62.94 Aligned_cols=23 Identities=39% Similarity=0.689 Sum_probs=21.4
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACI 442 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l 442 (899)
.+.|.||+|+|||||.++|+..+
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999877
No 413
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.79 E-value=0.0046 Score=67.38 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=24.1
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHH
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRII 38 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~ 38 (899)
.....++|+||+|+||||+++++++.+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3445789999999999999999999874
No 414
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.77 E-value=0.0077 Score=58.88 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=22.3
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHc
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRIIN 39 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l~~ 39 (899)
.|+|.|+||+||||+++.|++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999998743
No 415
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.76 E-value=0.011 Score=63.58 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=21.7
Q ss_pred EEEEecCCCChHHHHHHHHHHHhc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIF 443 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~ 443 (899)
.+.|.||+|||||||.++|+..+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 478999999999999999998773
No 416
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.76 E-value=0.0059 Score=63.07 Aligned_cols=36 Identities=25% Similarity=0.441 Sum_probs=28.4
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEeccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMS 455 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~ 455 (899)
.++|.|+||+||||+|+.|++.+...+.+++.++..
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D 41 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSD 41 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECch
Confidence 589999999999999999999864336666645543
No 417
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.75 E-value=0.0057 Score=64.51 Aligned_cols=32 Identities=31% Similarity=0.649 Sum_probs=27.4
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDM 454 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~ 454 (899)
.+++.||+|+|||++|+.||+.+ +..++..|.
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l---~~~iis~Ds 38 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL---PCELISVDS 38 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS---CEEEEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCcEEeccc
Confidence 58999999999999999999998 666666554
No 418
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.74 E-value=0.0096 Score=58.41 Aligned_cols=95 Identities=15% Similarity=0.128 Sum_probs=50.5
Q ss_pred EEEEecCCCChHHH-HHHHHHHHhccCCCceEEecccccc--cccchhhccCCCCCcccccccchhhHHHHhCCCEEEEE
Q psy2887 420 SFMFLGPTGVGKTE-LCKTLSACIFNNEESIIRIDMSEFI--EKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILL 496 (899)
Q Consensus 420 ~ill~GppGtGKT~-lA~~la~~l~~~~~~~~~~~~~~~~--~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~l 496 (899)
..+++||-|+|||| |.+.+ ..+...+.+++.+...--. ....+..-+|.....+-......+...+ ..+..+|+|
T Consensus 30 I~vitG~M~sGKTT~Llr~~-~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i-~~~~dvV~I 107 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRL-RRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHD-LTNVDVIGI 107 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGSC-CTTCSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHHH-hcCCCEEEE
Confidence 47889999999999 44554 4443445555555332100 1111111112111111111112233222 234569999
Q ss_pred ccccccCHHHHHHHHHhhcC
Q psy2887 497 DEIEKANSDVFNILLQILDD 516 (899)
Q Consensus 497 DEid~~~~~~~~~Ll~~le~ 516 (899)
||++-+++++.+.|..+.+.
T Consensus 108 DEaQFf~~~~v~~l~~la~~ 127 (219)
T 3e2i_A 108 DEVQFFDDEIVSIVEKLSAD 127 (219)
T ss_dssp CCGGGSCTHHHHHHHHHHHT
T ss_pred echhcCCHHHHHHHHHHHHC
Confidence 99999999888888877754
No 419
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.74 E-value=0.053 Score=60.03 Aligned_cols=41 Identities=15% Similarity=0.285 Sum_probs=34.6
Q ss_pred ceEEEEecCCCChHHHHHHHHHHHhccC-CCceEEecccccc
Q psy2887 418 YGSFMFLGPTGVGKTELCKTLSACIFNN-EESIIRIDMSEFI 458 (899)
Q Consensus 418 ~~~ill~GppGtGKT~lA~~la~~l~~~-~~~~~~~~~~~~~ 458 (899)
...++|+|++|+||||++-.||..+-.. +.++..+++..+.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r 141 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR 141 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 3478899999999999999999999776 7888888876543
No 420
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.74 E-value=0.014 Score=62.21 Aligned_cols=29 Identities=24% Similarity=0.461 Sum_probs=25.0
Q ss_pred eEEEEecCCCChHHHHHHHHHHHhccCCCceE
Q psy2887 419 GSFMFLGPTGVGKTELCKTLSACIFNNEESII 450 (899)
Q Consensus 419 ~~ill~GppGtGKT~lA~~la~~l~~~~~~~~ 450 (899)
.+++|.||||+||||++++||..+ +.+|+
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l---~~~f~ 53 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQII---NEKYH 53 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH---HHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh---CCCee
Confidence 369999999999999999999998 54543
No 421
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=95.74 E-value=0.038 Score=63.77 Aligned_cols=131 Identities=16% Similarity=0.120 Sum_probs=66.9
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhh---------------cCcc---cC---ch-HHH
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLL---------------AGTK---YR---GE-FED 71 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~---------------~~~~---~~---g~-~~~ 71 (899)
.-|.++|++|+||||||+.+++... ..+...+ + ..+.++++... .... .. .+ ...
T Consensus 153 ~vv~I~G~gGvGKTtLA~~v~~~~~-~~~~~~F-~-~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~ 229 (549)
T 2a5y_B 153 FFLFLHGRAGSGKSVIASQALSKSD-QLIGINY-D-SIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSV 229 (549)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHCS-STBTTTB-S-EEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhhh-HHHhccC-C-cEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHH
Confidence 4578999999999999999996210 0011111 2 22333433210 0000 00 00 011
Q ss_pred HHHHHHHHHHhcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhcc-ccc
Q psy2887 72 RLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRF-QKI 150 (899)
Q Consensus 72 ~l~~~~~~~~~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf-~~i 150 (899)
.+...+.+......+.+|++|+++... .. .+.. .....||.||....... .+ .-. ..+
T Consensus 230 ~l~~~l~~~L~~~kr~LlVLDdv~~~~---------~~--~~~~---~~gs~ilvTTR~~~v~~------~~-~~~~~~~ 288 (549)
T 2a5y_B 230 VLKRMICNALIDRPNTLFVFDDVVQEE---------TI--RWAQ---ELRLRCLVTTRDVEISN------AA-SQTCEFI 288 (549)
T ss_dssp HHHHHHHHHHTTSTTEEEEEEEECCHH---------HH--HHHH---HTTCEEEEEESBGGGGG------GC-CSCEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEECCCCch---------hh--cccc---cCCCEEEEEcCCHHHHH------Hc-CCCCeEE
Confidence 222333332212137899999998742 11 1111 14456777776544111 00 001 237
Q ss_pred cccCCCHHHHHHHHHhhh
Q psy2887 151 LVEEPDIEETISILRGLQ 168 (899)
Q Consensus 151 ~l~~p~~~e~~~il~~~~ 168 (899)
.++.++.++-.+++....
T Consensus 289 ~l~~L~~~ea~~Lf~~~a 306 (549)
T 2a5y_B 289 EVTSLEIDECYDFLEAYG 306 (549)
T ss_dssp ECCCCCHHHHHHHHHHTS
T ss_pred ECCCCCHHHHHHHHHHHh
Confidence 899999999999988653
No 422
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.74 E-value=0.012 Score=63.26 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.7
Q ss_pred EEEEecCCCChHHHHHHHHHHHhc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIF 443 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~ 443 (899)
.+.|.||+|||||||.++|+..+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHHCCCC
Confidence 478999999999999999998773
No 423
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.74 E-value=0.013 Score=65.68 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=22.8
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHc
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIIN 39 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~ 39 (899)
..-++|.|+||+|||+++..+|.....
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 345788999999999999999987754
No 424
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.74 E-value=0.0044 Score=61.34 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.7
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l 37 (899)
.|.|+|++|+||||+++.|++ +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 488999999999999999998 7
No 425
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.73 E-value=0.0076 Score=58.19 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=29.2
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehh
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA 57 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~ 57 (899)
+..|+|+|++|+||||+++.|+..+... +.+++.++..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~-------g~~~i~~d~~ 42 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCH-------GIPCYTLDGD 42 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT-------TCCEEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhC-------CCcEEEECCh
Confidence 4468899999999999999999987432 4556666543
No 426
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.71 E-value=0.0055 Score=59.89 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=21.6
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l 37 (899)
.|.|+|++||||||+++.++..+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 47899999999999999999987
No 427
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.71 E-value=0.0063 Score=60.52 Aligned_cols=28 Identities=21% Similarity=0.099 Sum_probs=24.1
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHc
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIIN 39 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~ 39 (899)
.+..|+|+|+||+||||+++.|++.+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3456899999999999999999998743
No 428
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.70 E-value=0.0039 Score=62.67 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=22.0
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACI 442 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l 442 (899)
.|+|.||||+||||+|+.||+.+
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999998
No 429
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.69 E-value=0.0075 Score=62.26 Aligned_cols=25 Identities=36% Similarity=0.546 Sum_probs=22.4
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHH
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRII 38 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l~ 38 (899)
..|+|+|+||+||||+++.|+..+.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999864
No 430
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.66 E-value=0.008 Score=60.48 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=22.9
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l 37 (899)
+-.+.|.||||+||||+++.||+.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999999988
No 431
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=95.66 E-value=0.0063 Score=63.20 Aligned_cols=56 Identities=14% Similarity=0.219 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhcc-CCccceeeccccCCCCceEe--hhHHHHHhcCCccEEEccCChHh
Q psy2887 641 KSLSILLKKIHKK-SPEANFIFLGDLINKGPQSL--DTLRMVYSMRNYAKIVLGNHEIH 696 (899)
Q Consensus 641 ~~l~~~l~~~~~~-~~~~~li~~GD~~d~g~~~~--~~~~~l~~~~~~~~~v~GNHe~~ 696 (899)
..++++++.+.-. +..|-++++||+++.|+... .+.+++..+.-.+.+|+||||..
T Consensus 26 ~~l~~~l~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~p~~~v~GNHD~~ 84 (274)
T 3d03_A 26 AANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDK 84 (274)
T ss_dssp HHHHHHHHHHHTCSSCCSEEEEESCCBSSCCHHHHHHHHHHHTTCSSCEEEECCTTSCH
T ss_pred HHHHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCH
Confidence 6788888877643 24588999999999887421 34455554443488999999975
No 432
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.63 E-value=0.036 Score=61.08 Aligned_cols=28 Identities=29% Similarity=0.236 Sum_probs=24.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHcC
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIING 40 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~~ 40 (899)
+.-++++||+|+||||++..||..+...
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4567889999999999999999988654
No 433
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.63 E-value=0.0082 Score=58.65 Aligned_cols=34 Identities=24% Similarity=0.206 Sum_probs=27.3
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEec
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRID 453 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~ 453 (899)
.+.|.|+||+||||+|+.|++.+...+.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4889999999999999999998744455666543
No 434
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.62 E-value=0.0059 Score=60.70 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=22.2
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l 37 (899)
..|+|.|+||+||||+++.|++.+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 358899999999999999999988
No 435
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.62 E-value=0.019 Score=62.57 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=21.2
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACI 442 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l 442 (899)
.+.|.||+|||||||.++|+..+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 48899999999999999999865
No 436
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.61 E-value=0.0068 Score=60.98 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=21.7
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACI 442 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l 442 (899)
.++|.|+||+||||+|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 437
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.60 E-value=0.064 Score=56.42 Aligned_cols=38 Identities=24% Similarity=0.411 Sum_probs=31.0
Q ss_pred eEEEEecCCCChHHHHHHHHHHHhccCCCceEEecccc
Q psy2887 419 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE 456 (899)
Q Consensus 419 ~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~ 456 (899)
..++|+||+|+||||++..||..+...+..+..+++..
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 142 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 47889999999999999999999866666666665543
No 438
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.58 E-value=0.0078 Score=59.36 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=21.8
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACI 442 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l 442 (899)
.++|.|+||+||||+++.|++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 48899999999999999999998
No 439
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.57 E-value=0.006 Score=59.04 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=21.9
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l 37 (899)
..-+.|+||+|+|||||++.|++.+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3457899999999999999999875
No 440
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.57 E-value=0.0072 Score=58.56 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.5
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l 37 (899)
+.|+|+||+|+|||||++.|....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 359999999999999999998775
No 441
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.57 E-value=0.0065 Score=60.08 Aligned_cols=29 Identities=14% Similarity=0.355 Sum_probs=24.1
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEe
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRI 452 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~ 452 (899)
.+.+.|++|+||||+++.|++ + +.+++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~---g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L---GAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T---TCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-C---CCEEEEc
Confidence 488999999999999999999 6 5555443
No 442
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.56 E-value=0.0066 Score=62.12 Aligned_cols=25 Identities=32% Similarity=0.638 Sum_probs=22.8
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l 37 (899)
+..++|+||||+||||+++.|++.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999887
No 443
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.56 E-value=0.019 Score=61.74 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=21.7
Q ss_pred EEEEecCCCChHHHHHHHHHHHhc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIF 443 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~ 443 (899)
.+.+.||+|+|||||.++|+..+.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHhcCCC
Confidence 588999999999999999998773
No 444
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.55 E-value=0.0087 Score=61.45 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=22.3
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l 37 (899)
+..|.|.|++|+||||+++.|+..+
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3458899999999999999999987
No 445
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.54 E-value=0.04 Score=66.48 Aligned_cols=45 Identities=22% Similarity=0.229 Sum_probs=35.5
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHH
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSA 440 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~ 440 (899)
+..+|.+..++.|...+.... +...+.++||+|+|||+||+.+++
T Consensus 128 k~~VGRe~eLeeL~elL~~~d--------~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELR--------PAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCC--------SSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhccC--------CCeEEEEEcCCCccHHHHHHHHHH
Confidence 334799999999988886421 122688999999999999999985
No 446
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=95.53 E-value=0.061 Score=68.80 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=37.0
Q ss_pred ccCCChHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCChHHHHHHHHHHH
Q psy2887 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSAC 441 (899)
Q Consensus 388 ~~v~gq~~~~~~l~~~i~~~~~~~~~~~~~~~~ill~GppGtGKT~lA~~la~~ 441 (899)
..++|.+..++.|...+.... .....+.++|++|+|||+||+.+++.
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~~-------~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKLN-------GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTTT-------TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred ceeccHHHHHHHHHHHHhhcc-------CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 458899999999998886432 11236889999999999999988765
No 447
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.52 E-value=0.0068 Score=60.41 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=23.6
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHc
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIIN 39 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~ 39 (899)
+..|+|+|+||+||||+++.|++.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999998743
No 448
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.51 E-value=0.023 Score=60.50 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=22.7
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHc
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIIN 39 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~ 39 (899)
..=++|.|+||+|||+++..+|..+..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~ 72 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN 72 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 345788999999999999999987654
No 449
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.50 E-value=0.016 Score=62.88 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.7
Q ss_pred EEEEecCCCChHHHHHHHHHHHhc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIF 443 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~ 443 (899)
.+.|.||+|||||||.++|+..+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCcHHHHHHHHHHcCCC
Confidence 488999999999999999998773
No 450
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.48 E-value=0.07 Score=53.90 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=16.4
Q ss_pred EEEEecCCCChHHHHHHHHH
Q psy2887 420 SFMFLGPTGVGKTELCKTLS 439 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la 439 (899)
.+++.||+|+|||++...+.
T Consensus 78 ~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCcHHhHHHHH
Confidence 59999999999997665543
No 451
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.48 E-value=0.0065 Score=59.27 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.3
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l 37 (899)
.++|+||||+||||+++.|++..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 47899999999999999999743
No 452
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.48 E-value=0.0079 Score=59.23 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=22.0
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l 37 (899)
+..+.|+||+|+|||||++.|++.+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4568999999999999999999876
No 453
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.47 E-value=0.017 Score=62.57 Aligned_cols=97 Identities=16% Similarity=0.117 Sum_probs=51.7
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEEEccc
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDEL 94 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~iDEi 94 (899)
-|+|.||+|+|||+|+..||..+ +..+++.|.-.+..+-. .|.- +.. ..+. .+-| =-|||.+
T Consensus 4 ~i~i~GptgsGKttla~~La~~~----------~~~iis~Ds~QvYr~l~-i~T~--kp~--~~E~--~gv~-hhlid~~ 65 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKF----------NGEVINSDSMQVYKDIP-IITN--KHP--LQER--EGIP-HHVMNHV 65 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH----------TEEEEECCTTTTBSSCT-TTTT--CCC--GGGT--TTCC-EESCSCB
T ss_pred EEEEECcchhhHHHHHHHHHHHC----------CCeEeecCccceecccc-cccC--CCC--HHHH--cCch-hhcCCcc
Confidence 47889999999999999999998 66666655433332211 0000 000 0001 1112 3567766
Q ss_pred cccccCCCCCchhhHHHhhhhhhcCCceEEEEecC
Q psy2887 95 HTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATT 129 (899)
Q Consensus 95 ~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~ 129 (899)
+---.-....-...+...+....+++++.|+.-++
T Consensus 66 ~~~~~~s~~~F~~~a~~~i~~i~~~g~~pilVGGT 100 (409)
T 3eph_A 66 DWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGT 100 (409)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHHHTTTCEEEEECSC
T ss_pred ChHhHhhHHHHHHHHHHHHHHHHhcCCCEEEECCh
Confidence 52111001112234556667777788776555444
No 454
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.46 E-value=0.04 Score=64.24 Aligned_cols=26 Identities=38% Similarity=0.578 Sum_probs=22.5
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRII 38 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~ 38 (899)
.+.+++.|+|||||||++..+...+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999998887765
No 455
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.45 E-value=0.0083 Score=60.39 Aligned_cols=23 Identities=35% Similarity=0.781 Sum_probs=21.9
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACI 442 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l 442 (899)
.+.|.||||+||||+++.|++.+
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999988
No 456
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.45 E-value=0.0056 Score=60.70 Aligned_cols=22 Identities=32% Similarity=0.367 Sum_probs=20.1
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l 37 (899)
.+.|+||+|+||||+++.|++ +
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-L 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-T
T ss_pred EEEEECCCCCCHHHHHHHHHH-C
Confidence 478999999999999999987 5
No 457
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.44 E-value=0.0062 Score=60.14 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=22.4
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l 37 (899)
+..|+|.|+||+||||+++.|++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999999876
No 458
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.43 E-value=0.0086 Score=58.68 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=22.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHHcC
Q psy2887 16 PVLIGEPGVGKTAIVEGLAQRIING 40 (899)
Q Consensus 16 iLL~GppGtGKTtla~~la~~l~~~ 40 (899)
|.|.|++|+||||+++.|++.+...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~ 27 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 7899999999999999999988543
No 459
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.42 E-value=0.011 Score=59.39 Aligned_cols=23 Identities=26% Similarity=0.562 Sum_probs=22.0
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACI 442 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l 442 (899)
.+.+.||||+||||+|+.|++.+
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999998
No 460
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.42 E-value=0.011 Score=58.59 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=21.9
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACI 442 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l 442 (899)
.++|.|+||+||||+|+.|++.+
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998
No 461
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.40 E-value=0.0095 Score=58.19 Aligned_cols=29 Identities=21% Similarity=0.440 Sum_probs=24.9
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIR 451 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~ 451 (899)
.+.++|++|+||||+|+.+++.+ +.+++.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~l---g~~vid 42 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKY---GAHVVN 42 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---CCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCEEEE
Confidence 58899999999999999999987 655544
No 462
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.40 E-value=0.026 Score=59.40 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=23.3
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHc
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIIN 39 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~ 39 (899)
+.-++|+||+|+||||++..+|..+..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 345788999999999999999998854
No 463
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.40 E-value=0.01 Score=61.81 Aligned_cols=34 Identities=29% Similarity=0.525 Sum_probs=27.7
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE 456 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~ 456 (899)
.+++.||+|+|||+||..+|+.+ +..++..|.-.
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~---~~~iis~Ds~q 45 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKIL---PVELISVDSAL 45 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS---CEEEEECCTTT
T ss_pred EEEEECCCccCHHHHHHHHHHhC---CCcEEeccccc
Confidence 57899999999999999999998 65666555433
No 464
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.39 E-value=0.011 Score=58.06 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=25.8
Q ss_pred EEEecCCCChHHHHHHHHHHHhccCCCceEEe
Q psy2887 421 FMFLGPTGVGKTELCKTLSACIFNNEESIIRI 452 (899)
Q Consensus 421 ill~GppGtGKT~lA~~la~~l~~~~~~~~~~ 452 (899)
|.|.|++|+||||+++.|++.+...+.+++..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 78999999999999999999885545565543
No 465
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.39 E-value=0.017 Score=61.91 Aligned_cols=124 Identities=18% Similarity=0.140 Sum_probs=0.0
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEecccccccccchhhccCCCC----------------------------
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPP---------------------------- 471 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~---------------------------- 471 (899)
.+.|.||+|||||||.++|+..+ ....--+.++...+.......+-+|.-+
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~ 106 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH-VPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPK 106 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS-CCSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHH
T ss_pred EEEEECCCCccHHHHHHHHHcCC-CCCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHH
Q ss_pred --------------------CcccccccchhhHHHHhCCCEEEEEcccc-ccCHHHHHHHHHhhcCCceecCCCceEecC
Q psy2887 472 --------------------GYIGYEEGGYLTEIVRRKPYSLILLDEIE-KANSDVFNILLQILDDGRLTDNRGRTINFR 530 (899)
Q Consensus 472 --------------------~~~g~~~~~~l~~~~~~~~~~vl~lDEid-~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~ 530 (899)
...|....+.....+-...+.+|++||.- .+++.....+...|.+ -..
T Consensus 107 ~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~-----------l~~ 175 (348)
T 3d31_A 107 RVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSV-----------LHK 175 (348)
T ss_dssp HHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHH-----------HHH
T ss_pred HHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH-----------HHH
Q ss_pred --CeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEec
Q psy2887 531 --NTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFR 583 (899)
Q Consensus 531 --~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~ 583 (899)
+..+|++|....+ ...-+|.++.+.
T Consensus 176 ~~g~tii~vTHd~~~----------------------------~~~~adri~vl~ 202 (348)
T 3d31_A 176 KNKLTVLHITHDQTE----------------------------ARIMADRIAVVM 202 (348)
T ss_dssp HTTCEEEEEESCHHH----------------------------HHHHCSEEEEES
T ss_pred hcCCEEEEEeCCHHH----------------------------HHHhCCEEEEEE
No 466
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.36 E-value=0.03 Score=67.73 Aligned_cols=115 Identities=17% Similarity=0.131 Sum_probs=57.0
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHHc----CCCCCccCC---C-eEEE-EehhhhhcCcccCchHHHHHHHHHHHHHhc
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRIIN----GEVPNSLLS---K-KILL-LDIALLLAGTKYRGEFEDRLKKILKEISNN 83 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~~----~~~p~~l~~---~-~~~~-~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~ 83 (899)
..-++|+||+|+||||+.+.++..... ..+|..-.. . .++. +...... ......+....+++..-+...
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l--~~~~stfs~em~~~~~il~~a 750 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNI--YKGRSTFMEELTDTAEIIRKA 750 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC------------CCHHHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHH--HHhHHHhhHHHHHHHHHHHhc
Confidence 345788999999999999998864321 123321100 0 1111 1111111 111222333344444444335
Q ss_pred CCCEEEEEccccccccCCCCCchhhHHHhhhhhh-cCCceEEEEecChhH
Q psy2887 84 QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL-SRGELHCIGATTLNE 132 (899)
Q Consensus 84 ~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l-~~~~v~vI~at~~~~ 132 (899)
..|.+|++||...=.. ......+...+...+ ...+..+|.+|...+
T Consensus 751 ~~p~LlLLDEP~~GlD---~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e 797 (918)
T 3thx_B 751 TSQSLVILDELGRGTS---THDGIAIAYATLEYFIRDVKSLTLFVTHYPP 797 (918)
T ss_dssp CTTCEEEEESTTTTSC---HHHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred cCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH
Confidence 6789999999875332 111223333344444 444567777777665
No 467
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.36 E-value=0.0082 Score=59.62 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=21.9
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l 37 (899)
+.-++|+||+|+||||+++.|+..+
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4457889999999999999999865
No 468
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.36 E-value=0.025 Score=63.49 Aligned_cols=35 Identities=14% Similarity=0.290 Sum_probs=28.2
Q ss_pred EEEEecCCCChHHHHHHHHHHHhcc-CCCceEEecc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFN-NEESIIRIDM 454 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~-~~~~~~~~~~ 454 (899)
.+++.|+||+|||+++..++..+.. .+.+++.+++
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 5899999999999999999988754 3556666654
No 469
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.33 E-value=0.024 Score=62.41 Aligned_cols=79 Identities=20% Similarity=0.275 Sum_probs=45.3
Q ss_pred eEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccc-ccccccchhhccCCCCCcccccccchhhHHHHhCCCEEEEEc
Q psy2887 419 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMS-EFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLD 497 (899)
Q Consensus 419 ~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lD 497 (899)
+.+++.||+|+||||+.++++..+......++.+.-+ ++........-++ ..+|......+...++.. +.++++.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~---~~~g~~f~~~lr~~Lrq~-pd~i~vg 243 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVN---PRVDMTFARGLRAILRQD-PDVVMVG 243 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECB---GGGTBCHHHHHHHHGGGC-CSEEEES
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEc---cccCcCHHHHHHHHhccC-CCeEEEc
Confidence 3689999999999999999999985555565554321 1111000000000 012222223344556654 4788999
Q ss_pred cccc
Q psy2887 498 EIEK 501 (899)
Q Consensus 498 Eid~ 501 (899)
|+..
T Consensus 244 EiRd 247 (418)
T 1p9r_A 244 EIRD 247 (418)
T ss_dssp CCCS
T ss_pred CcCC
Confidence 9753
No 470
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.31 E-value=0.009 Score=58.34 Aligned_cols=25 Identities=36% Similarity=0.559 Sum_probs=21.8
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l 37 (899)
..-++|+||+|+|||||+++|++..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3457889999999999999999875
No 471
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.31 E-value=0.0086 Score=58.27 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.5
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHH
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRII 38 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l~ 38 (899)
-+.|+||+|+||||++++|++.+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 478999999999999999998763
No 472
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.31 E-value=0.042 Score=57.36 Aligned_cols=123 Identities=18% Similarity=0.171 Sum_probs=0.0
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCce-------EEecccccccccchhhccCCC----------------------
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESI-------IRIDMSEFIEKHSISRLIGAP---------------------- 470 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~-------~~~~~~~~~~~~~~~~l~g~~---------------------- 470 (899)
.+.+.||+|+|||||.++|+..+....+.+ +..+-..+........+.+..
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~l~~~l~~~ 145 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKF 145 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHHHHHHTTCCCHHHHHHHHHHTTCHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHHHHhhCcccchHHHHHHHHHhChHHHHHhc
Q ss_pred ------------CCcccccccchhhHHHHhCCCEEEEEcccc-ccCHHHHHHHHHh-hcCCceecCCCceEecCCeEEEE
Q psy2887 471 ------------PGYIGYEEGGYLTEIVRRKPYSLILLDEIE-KANSDVFNILLQI-LDDGRLTDNRGRTINFRNTIIVM 536 (899)
Q Consensus 471 ------------~~~~g~~~~~~l~~~~~~~~~~vl~lDEid-~~~~~~~~~Ll~~-le~g~~~~~~g~~~~~~~~~iI~ 536 (899)
....|....+.....+-...+.+|++||.- .+++.....+++. +.. -..+..+|+
T Consensus 146 ~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~-----------~~~~~tvii 214 (290)
T 2bbs_A 146 AEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK-----------LMANKTRIL 214 (290)
T ss_dssp TTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCC-----------CTTTSEEEE
T ss_pred cccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHH-----------hhCCCEEEE
Q ss_pred ecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEe
Q psy2887 537 TSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVF 582 (899)
Q Consensus 537 tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f 582 (899)
+|. +.++...+|.++.+
T Consensus 215 vtH-----------------------------d~~~~~~~d~i~~l 231 (290)
T 2bbs_A 215 VTS-----------------------------KMEHLKKADKILIL 231 (290)
T ss_dssp ECC-----------------------------CHHHHHHSSEEEEE
T ss_pred Eec-----------------------------CHHHHHcCCEEEEE
No 473
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.30 E-value=0.039 Score=57.93 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=30.6
Q ss_pred eEEEEecCCCChHHHHHHHHHHHhccCCCceEEeccc
Q psy2887 419 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMS 455 (899)
Q Consensus 419 ~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~ 455 (899)
..+.++|++|+||||++..+|..+...+..+..+++.
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d 135 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 3688899999999999999999986667777766654
No 474
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.30 E-value=0.0086 Score=59.22 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=22.0
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l 37 (899)
+..+.|+||+|+||||+++.|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3468899999999999999999865
No 475
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.29 E-value=0.0085 Score=59.33 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=22.9
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESII 450 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~ 450 (899)
.+.|.||+|+||||+++.|+. + +.+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-l---g~~~i 30 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-L---GVPLV 30 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-T---TCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-C---CCccc
Confidence 488999999999999999997 5 55554
No 476
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.29 E-value=0.0089 Score=59.04 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=21.3
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l 37 (899)
.-+.|+||+|+||||+++.|++.+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 357889999999999999999875
No 477
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.29 E-value=0.017 Score=62.67 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=24.6
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIR 451 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~ 451 (899)
.++|+||||+||||++++|+..+ +..++.
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~ 199 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELC---GGKALN 199 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---CCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHhhc---CCcEEE
Confidence 58999999999999999999987 555443
No 478
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.28 E-value=0.012 Score=60.25 Aligned_cols=25 Identities=24% Similarity=0.427 Sum_probs=22.6
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l 37 (899)
...|.|.||+|+||||+++.||+.+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 3468899999999999999999988
No 479
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.26 E-value=0.012 Score=58.13 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=21.9
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l 37 (899)
.|.|.|++|+||||+++.||+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 68899999999999999999988
No 480
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.26 E-value=0.012 Score=58.41 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=21.9
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACI 442 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l 442 (899)
.++|.|+||+||||+|+.|++.+
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999987
No 481
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.25 E-value=0.0095 Score=63.27 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=26.7
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEeh
Q psy2887 15 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 56 (899)
Q Consensus 15 ~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~ 56 (899)
.|+|.||+|+||||+++.||..+ +..++..|.
T Consensus 9 lI~I~GptgSGKTtla~~La~~l----------~~~iis~Ds 40 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF----------NGEIISGDS 40 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT----------TEEEEECCS
T ss_pred eEEEECCCcCcHHHHHHHHHHHc----------CCceecccc
Confidence 57899999999999999999988 556665553
No 482
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.21 E-value=0.021 Score=56.67 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=22.3
Q ss_pred EEEEecCCCChHHHHHHHHHHHhc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIF 443 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~ 443 (899)
.+.+.||+|+|||||++.|+..+.
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 688999999999999999999984
No 483
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.20 E-value=0.059 Score=60.04 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=23.1
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHHc
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRIIN 39 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~~ 39 (899)
+..-+++.|+||+|||+++..+|.....
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~ 223 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSD 223 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHH
Confidence 3345788999999999999999987754
No 484
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.16 E-value=0.013 Score=63.51 Aligned_cols=96 Identities=14% Similarity=0.143 Sum_probs=53.8
Q ss_pred CCCCCeEEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhhcCcccCchHHHHHHHHHHHHHhcCCCEEEE
Q psy2887 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 90 (899)
Q Consensus 11 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~~~~~~iL~ 90 (899)
..+..++|+||||+||||+++++++.. +..++.+.... . .+... +.. ..+..+++
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~----------~g~~~~~~~~~----~----~~~~~----lg~---~~q~~~~l 221 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC----------GGKALNVNLPL----D----RLNFE----LGV---AIDQFLVV 221 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH----------CCEEECCSSCT----T----THHHH----HGG---GTTCSCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc----------CCcEEEEeccc----h----hHHHH----HHH---hcchhHHH
Confidence 345578999999999999999999876 44554321110 0 00101 111 12345789
Q ss_pred Ecccccccc-CCCC-C-chhhHHHhhhhhhcCCceEEEEecChhH
Q psy2887 91 IDELHTMIG-TGKV-E-GSIDAGNMLKPELSRGELHCIGATTLNE 132 (899)
Q Consensus 91 iDEi~~l~~-~~~~-~-~~~~~~~~l~~~l~~~~v~vI~at~~~~ 132 (899)
+||++.+.. .+.. . ........+...+.. .+.++.+||.++
T Consensus 222 ~dd~~~~~~~~r~l~~~~~~~~~~~l~~~ldG-~v~v~~~tn~~~ 265 (377)
T 1svm_A 222 FEDVKGTGGESRDLPSGQGINNLDNLRDYLDG-SVKVNLEKKHLN 265 (377)
T ss_dssp ETTCCCSTTTTTTCCCCSHHHHHHTTHHHHHC-SSCEEECCSSSC
T ss_pred HHHHHHHHHHHhhccccCcchHHHHHHHHhcC-CCeEeeccCchh
Confidence 999998875 1111 1 111111344444543 355677777776
No 485
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.15 E-value=0.068 Score=56.15 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=27.0
Q ss_pred eEEEEecCCCChHHHHHHHHHHHhccCCCceEE
Q psy2887 419 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIR 451 (899)
Q Consensus 419 ~~ill~GppGtGKT~lA~~la~~l~~~~~~~~~ 451 (899)
..+.|.||+|+||||+++.||..+...++.+..
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l 133 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLM 133 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 378899999999999999999998555555443
No 486
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.14 E-value=0.01 Score=55.85 Aligned_cols=22 Identities=41% Similarity=0.637 Sum_probs=0.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHHH
Q psy2887 16 PVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 16 iLL~GppGtGKTtla~~la~~l 37 (899)
+.|.||+|+|||||++++++.+
T Consensus 36 v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 36 VYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhC
No 487
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.11 E-value=0.026 Score=55.52 Aligned_cols=98 Identities=19% Similarity=0.163 Sum_probs=50.7
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHcCCCCCccCCCeEEEEehhhhh-cCc----ccCchH-----HHHHHHHHHHHHhcCCC
Q psy2887 17 VLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLL-AGT----KYRGEF-----EDRLKKILKEISNNQKD 86 (899)
Q Consensus 17 LL~GppGtGKTtla~~la~~l~~~~~p~~l~~~~~~~~~~~~l~-~~~----~~~g~~-----~~~l~~~~~~~~~~~~~ 86 (899)
+++||.|+||||.+-.++.+.... +..++.+....-. .+. +..|.. .....++++.+. ...
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~~-------g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~--~~~ 102 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQFA-------KQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHIT--EEM 102 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHT-------TCCEEEEECC-----------------CCEEECSSGGGGGGGCC--SSC
T ss_pred EEECCCCCcHHHHHHHHHHHHHHC-------CCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHHHHh--cCC
Confidence 468999999999999888877543 3344433211000 000 000000 000112222221 123
Q ss_pred EEEEEccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhH
Q psy2887 87 IIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNE 132 (899)
Q Consensus 87 ~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~ 132 (899)
-+++|||++.+.+ +..+.+..+... .+.||+++...+
T Consensus 103 dvViIDEaQF~~~--------~~V~~l~~l~~~-~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 103 DVIAIDEVQFFDG--------DIVEVVQVLANR-GYRVIVAGLDQD 139 (214)
T ss_dssp CEEEECCGGGSCT--------THHHHHHHHHHT-TCEEEEEECSBC
T ss_pred CEEEEECcccCCH--------HHHHHHHHHhhC-CCEEEEEecccc
Confidence 4999999999743 333445444444 677887776554
No 488
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.11 E-value=0.055 Score=65.39 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.1
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHH
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQR 36 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~ 36 (899)
+-+.++|++|+||||||+.+++.
T Consensus 151 RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 151 KNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CEEEECCSTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCccHHHHHHHHHHh
Confidence 46788999999999999999853
No 489
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.11 E-value=0.015 Score=66.71 Aligned_cols=36 Identities=28% Similarity=0.327 Sum_probs=29.3
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEeccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMS 455 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~ 455 (899)
.+++.||||+|||+|++.++..+...+.+++.+...
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e 318 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVENACANKERAILFAYE 318 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 589999999999999999998886556666665543
No 490
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.10 E-value=0.013 Score=63.15 Aligned_cols=125 Identities=20% Similarity=0.214 Sum_probs=0.0
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEeccccccc-----ccchhhccCCCC-----------------------
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE-----KHSISRLIGAPP----------------------- 471 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~-----~~~~~~l~g~~~----------------------- 471 (899)
.+.|.||+|+|||||.++|+..+ ....--+.++...+.. .....+-+|.-+
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~ 111 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD-VPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK 111 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS-CCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC-CCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcC
Q ss_pred ----------------------------CcccccccchhhHHHHhCCCEEEEEcccc-ccCHHHHHHHHHhhcCCceecC
Q psy2887 472 ----------------------------GYIGYEEGGYLTEIVRRKPYSLILLDEIE-KANSDVFNILLQILDDGRLTDN 522 (899)
Q Consensus 472 ----------------------------~~~g~~~~~~l~~~~~~~~~~vl~lDEid-~~~~~~~~~Ll~~le~g~~~~~ 522 (899)
...|....+.....+-...+.+|++||.- .+++.....+...|.+
T Consensus 112 ~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~------ 185 (353)
T 1oxx_K 112 MSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE------ 185 (353)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHH------
T ss_pred CCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH------
Q ss_pred CCceEecC-CeEEEEecCCChhhhhhhhcCcHHHHHHHHHHHHhhcCChhHhhccCeEEEec
Q psy2887 523 RGRTINFR-NTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFR 583 (899)
Q Consensus 523 ~g~~~~~~-~~~iI~tsn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~ 583 (899)
.... +..+|++|....+ ...-+|.++.+.
T Consensus 186 ----l~~~~g~tvi~vTHd~~~----------------------------~~~~adri~vl~ 215 (353)
T 1oxx_K 186 ----VQSRLGVTLLVVSHDPAD----------------------------IFAIADRVGVLV 215 (353)
T ss_dssp ----HHHHHCCEEEEEESCHHH----------------------------HHHHCSEEEEEE
T ss_pred ----HHHhcCCEEEEEeCCHHH----------------------------HHHhCCEEEEEE
No 491
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.10 E-value=0.013 Score=57.86 Aligned_cols=29 Identities=17% Similarity=0.397 Sum_probs=24.9
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEE
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIR 451 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~ 451 (899)
.+.+.|++|+||||+|+.||+.+ +.+++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l---g~~~~d 32 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL---GVPYLS 32 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---TCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCceec
Confidence 58899999999999999999998 655543
No 492
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=95.09 E-value=0.043 Score=70.24 Aligned_cols=129 Identities=14% Similarity=0.129 Sum_probs=66.6
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHH--cCCCCCccCCCeEEEEehhhhh---------------cC----cccCchHHHH
Q psy2887 14 SNPVLIGEPGVGKTAIVEGLAQRII--NGEVPNSLLSKKILLLDIALLL---------------AG----TKYRGEFEDR 72 (899)
Q Consensus 14 ~~iLL~GppGtGKTtla~~la~~l~--~~~~p~~l~~~~~~~~~~~~l~---------------~~----~~~~g~~~~~ 72 (899)
+-+.|+|++|+||||||+.+++... .... ...++.++++... .. ..........
T Consensus 148 ~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 222 (1249)
T 3sfz_A 148 GWVTIYGMAGCGKSVLAAEAVRDHSLLEGCF-----SGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEE 222 (1249)
T ss_dssp EEEEEECSTTSSHHHHHHHHTCCHHHHTTTS-----TTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHhcChhHHHhhC-----CCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHH
Confidence 3477999999999999998886531 1111 2234444433210 00 0001111222
Q ss_pred HHHHHHHHH-hcCCCEEEEEccccccccCCCCCchhhHHHhhhhhhcCCceEEEEecChhHHHHhhhcCHHHHhcccccc
Q psy2887 73 LKKILKEIS-NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKIL 151 (899)
Q Consensus 73 l~~~~~~~~-~~~~~~iL~iDEi~~l~~~~~~~~~~~~~~~l~~~l~~~~v~vI~at~~~~~~~~~~ld~al~~Rf~~i~ 151 (899)
+...+.... ...++.+|+||+++... .+.. +. ....||.||..... ...+...-..+.
T Consensus 223 ~~~~l~~~l~~~~~~~LlvlDd~~~~~-------------~~~~-~~-~~~~ilvTtR~~~~------~~~~~~~~~~~~ 281 (1249)
T 3sfz_A 223 AKDRLRVLMLRKHPRSLLILDDVWDPW-------------VLKA-FD-NQCQILLTTRDKSV------TDSVMGPKHVVP 281 (1249)
T ss_dssp HHHHHHHHTSSSSCSCEEEEESCCCHH-------------HHTT-TC-SSCEEEEEESSTTT------TTTCCSCBCCEE
T ss_pred HHHHHHHHHhccCCCEEEEEecCCCHH-------------HHHh-hc-CCCEEEEEcCCHHH------HHhhcCCceEEE
Confidence 333333222 12347899999998541 1222 22 34567777665431 101111112366
Q ss_pred ccC-CCHHHHHHHHHhhh
Q psy2887 152 VEE-PDIEETISILRGLQ 168 (899)
Q Consensus 152 l~~-p~~~e~~~il~~~~ 168 (899)
++. ++.++-.+++....
T Consensus 282 ~~~~l~~~~a~~l~~~~~ 299 (1249)
T 3sfz_A 282 VESGLGREKGLEILSLFV 299 (1249)
T ss_dssp CCSSCCHHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHhh
Confidence 775 89999999887655
No 493
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.07 E-value=0.061 Score=64.32 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=22.1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRII 38 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l~ 38 (899)
..-++|+||+|+||||+.+.++....
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHH
Confidence 34578999999999999999998643
No 494
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.04 E-value=0.0092 Score=59.25 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=23.3
Q ss_pred CCCCeEEEcCCCCcHHHHHHHHHHHHH
Q psy2887 12 FTSNPVLIGEPGVGKTAIVEGLAQRII 38 (899)
Q Consensus 12 ~~~~iLL~GppGtGKTtla~~la~~l~ 38 (899)
.+.-+.|.||+|+|||||++.|+..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344678899999999999999999884
No 495
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.04 E-value=0.011 Score=58.61 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=21.6
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACI 442 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l 442 (899)
.++|.||||+||||+++.|++.+
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999999987
No 496
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=95.04 E-value=0.31 Score=61.03 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=23.3
Q ss_pred EEEEecCCCChHHHHHHHHHHHhccCCCceEEe
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRI 452 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~~~~~~~~~~ 452 (899)
.++++||+|+|||.+|-..+-.....+..++.+
T Consensus 626 d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvl 658 (1151)
T 2eyq_A 626 DRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVL 658 (1151)
T ss_dssp EEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEE
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEE
Confidence 699999999999998865554443444444444
No 497
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.04 E-value=0.015 Score=59.42 Aligned_cols=23 Identities=30% Similarity=0.726 Sum_probs=21.9
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACI 442 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l 442 (899)
.++|.||||+||||+++.|++.+
T Consensus 29 ~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999988
No 498
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.02 E-value=0.014 Score=56.39 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=21.3
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACI 442 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l 442 (899)
.+.|.||+|+||||+++.|+..+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58899999999999999999876
No 499
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.01 E-value=0.017 Score=57.44 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=28.5
Q ss_pred EEEEecCCCChHHHHHHHHHHHhc-cCCCceEEeccc
Q psy2887 420 SFMFLGPTGVGKTELCKTLSACIF-NNEESIIRIDMS 455 (899)
Q Consensus 420 ~ill~GppGtGKT~lA~~la~~l~-~~~~~~~~~~~~ 455 (899)
.++|.|+||+||||+++.|++.+. ..+.+++.++..
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 588999999999999999999884 334456666643
No 500
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.99 E-value=0.015 Score=62.11 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=21.5
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHH
Q psy2887 13 TSNPVLIGEPGVGKTAIVEGLAQRI 37 (899)
Q Consensus 13 ~~~iLL~GppGtGKTtla~~la~~l 37 (899)
..-++|+||||+|||++|..+|...
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3457999999999999999998764
Done!