RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2887
(899 letters)
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 1075 bits (2782), Expect = 0.0
Identities = 355/622 (57%), Positives = 481/622 (77%), Gaps = 10/622 (1%)
Query: 15 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLK 74
NPVLIGEPGVGKTAIVEGLAQRI+ G+VP L K+I+ L + LLAG KYRGEFE+RLK
Sbjct: 193 NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLK 252
Query: 75 KILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYR 134
+++E+ +Q ++I+FIDELHT++G GK EG++DAGNMLKP L+RGEL IGATTL+EYR
Sbjct: 253 AVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYR 312
Query: 135 QYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRY 194
+ IEKD A ERRFQ + V+EP +EETISILRGL++KYEVHHGV I+D AI+AA+ LS+RY
Sbjct: 313 E-IEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRY 371
Query: 195 ISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKR 254
I++R +PDKAIDLIDEAAA++++ ++S PE +D LER+ +QL+IE EA+K+E D S++R
Sbjct: 372 ITERRLPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQER 431
Query: 255 LLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSK 314
L I+ EI KL + A L W+ E+ +++ ++ + +++VR +I A R+ D ++
Sbjct: 432 LKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAE 491
Query: 315 LKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQV 374
L+YGEL KLE ++ S+K ++ +V E+IAEIVSR TGIPVSK+++
Sbjct: 492 LRYGELPKLEAEVEALSEKL-------RGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEG 544
Query: 375 EREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTEL 434
EREKLL +E L KRVVGQDEAI AV++AIRR+R+GL D RP GSF+FLGPTGVGKTEL
Sbjct: 545 EREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTEL 604
Query: 435 CKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLI 494
KTL+A +F+ EE++IRIDM+E++EKH++SRLIGAPPGY+GYEEGG LTE VRR+PYS+I
Sbjct: 605 AKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVI 664
Query: 495 LLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEM--EKGD 552
L DEIEKA+ DVFNILLQILDDGRLTD+ GRT++FRNT+I++TSNLGS I E +
Sbjct: 665 LFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWP 724
Query: 553 KEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDL 612
E I+ V ++ +FRPEF+NR+D+I+VFR L ++ I I IQL+ L+ +L + + L
Sbjct: 725 YERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISL 784
Query: 613 KISKAALKKISNIGFDLIYGAR 634
++++AA ++ G+D ++GAR
Sbjct: 785 ELTEAAKDFLAERGYDPVFGAR 806
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 806 bits (2085), Expect = 0.0
Identities = 292/620 (47%), Positives = 396/620 (63%), Gaps = 111/620 (17%)
Query: 15 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLK 74
NPVLIGEPGVGKTAI EGLAQ+IIN EVP L K+++ LD+ GTKYRGEFEDRLK
Sbjct: 203 NPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-----GTKYRGEFEDRLK 257
Query: 75 KILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYR 134
K++ EI +II+FID +IDA N+LKP L+RGEL CIGATTL+EYR
Sbjct: 258 KVMDEIRQA-GNIILFID------------AAIDASNILKPSLARGELQCIGATTLDEYR 304
Query: 135 QYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRY 194
+YIEKDAA ERRFQ I V++P ++E+I IL+GL+ +YE HH V ITD AI AA +LS RY
Sbjct: 305 KYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRY 364
Query: 195 ISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKR 254
ISDRF+PDKAIDLIDEA +K+++ + P + +LE++L +++ E +A + +
Sbjct: 365 ISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQE------ 418
Query: 255 LLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSK 314
+EK + +++ +++R ++ K W+
Sbjct: 419 -----------------------FEK-----AASLRDTEQRLREQVEDT--KKSWKEKQG 448
Query: 315 LKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQV 374
+ ++V ++IA +VS TG+PVSKI Q
Sbjct: 449 QE-------------------------------NSEVTVDDIAMVVSSWTGVPVSKIAQT 477
Query: 375 EREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTEL 434
E +KLLN+EN+L RV+GQDEA+ AV+ A+RR+R+GL D KRP GSF+FLGPTGVGKTEL
Sbjct: 478 ETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTEL 537
Query: 435 CKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLI 494
+ L+ IF +EES+IRIDMSE++EKHS S GG LTE VRRKPYS++
Sbjct: 538 ARALAESIFGDEESMIRIDMSEYMEKHSTS--------------GGQLTEKVRRKPYSVV 583
Query: 495 LLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKE 554
LLD IEKA+ DVFNILLQ+L+DGRLTD++GRT++FRNTI++MTSN+G+
Sbjct: 584 LLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGAS----------- 632
Query: 555 IIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKI 614
K VM E+K FRPEFINRID+IIVF L +K++ I ++ + L +L + ++ +++
Sbjct: 633 -EKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIEL 691
Query: 615 SKAALKKISNIGFDLIYGAR 634
+ AA K++ G DL YGAR
Sbjct: 692 TDAAKAKVAEEGVDLEYGAR 711
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus
thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Length = 311
Score = 473 bits (1220), Expect = e-161
Identities = 156/264 (59%), Positives = 208/264 (78%), Gaps = 2/264 (0%)
Query: 373 QVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKT 432
EREKLL +E L KRVVGQDEAI AV++AIRR+R+GL D RP GSF+FLGPTGVGKT
Sbjct: 2 LGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKT 61
Query: 433 ELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYS 492
EL KTL+A +F+ EE++IRIDM+E++EKH++SRLIGAPPGY+GYEEGG LTE VRR+PYS
Sbjct: 62 ELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYS 121
Query: 493 LILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEM--EK 550
+IL D IEKA+ DVFNILLQ+LDDGRLTD+ GRT++FRNT+I+MTSNLGS I E +
Sbjct: 122 VILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKG 181
Query: 551 GDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNM 610
E I+ V ++ +FRPEF+NR+D+I+VFR L ++ I I IQ++ L+ +L + +
Sbjct: 182 WPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRI 241
Query: 611 DLKISKAALKKISNIGFDLIYGAR 634
L++++AA ++ G+D ++GAR
Sbjct: 242 SLELTEAAKDFLAERGYDPVFGAR 265
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 435 bits (1120), Expect = e-140
Identities = 122/288 (42%), Positives = 186/288 (64%), Gaps = 4/288 (1%)
Query: 348 KTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRS 407
K V +I +V+R IP + Q +R+ L N+ + L V GQD+AI A++ AI+ +
Sbjct: 418 KKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMA 477
Query: 408 RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 467
R+GL +P GSF+F GPTGVGKTE+ LS + ++R DMSE++E+H++SRLI
Sbjct: 478 RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIE---LLRFDMSEYMERHTVSRLI 534
Query: 468 GAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTI 527
GAPPGY+G+++GG LT+ V + P++++LLDEIEKA+ DVFNILLQ++D+G LTDN GR
Sbjct: 535 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKA 594
Query: 528 NFRNTIIVMTSNLGSDKIKEMEKG-DKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLN 586
+FRN ++VMT+N G + + G + M E+K F PEF NR+D+II F +L+
Sbjct: 595 DFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLS 654
Query: 587 RKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGAR 634
I + + + L+ +L + + L++S+ A ++ G+D GAR
Sbjct: 655 TDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGAR 702
Score = 379 bits (976), Expect = e-119
Identities = 112/209 (53%), Positives = 146/209 (69%), Gaps = 2/209 (0%)
Query: 15 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLK 74
NP+L+GE GVGKTAI EGLA RI+ G+VP + I LDI LLAGTKYRG+FE R K
Sbjct: 209 NPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFK 268
Query: 75 KILKEISNNQKDIIIFIDELHTMIGTGKVEG-SIDAGNMLKPELSRGELHCIGATTLNEY 133
+LK++ + + I+FIDE+HT+IG G G +DA N++KP LS G++ IG+TT E+
Sbjct: 269 ALLKQLEQD-TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327
Query: 134 RQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYR 193
EKD A RRFQKI + EP IEET+ I+ GL+ KYE HH V T A+ AA EL+ +
Sbjct: 328 SNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVK 387
Query: 194 YISDRFMPDKAIDLIDEAAAKIKIEIDSK 222
YI+DR +PDKAID+IDEA A+ ++ SK
Sbjct: 388 YINDRHLPDKAIDVIDEAGARARLMPVSK 416
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 420 bits (1081), Expect = e-138
Identities = 141/282 (50%), Positives = 192/282 (68%), Gaps = 22/282 (7%)
Query: 15 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLK 74
NPVLIGEPGVGKTAI EGLAQ+IIN EVP L K+++ LD+ GTKYRGEFEDRLK
Sbjct: 203 NPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-----GTKYRGEFEDRLK 257
Query: 75 KILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYR 134
K++ EI +II+FID +IDA N+LKP L+RGEL CIGATTL+EYR
Sbjct: 258 KVMDEIRQA-GNIILFID------------AAIDASNILKPSLARGELQCIGATTLDEYR 304
Query: 135 QYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRY 194
+YIEKDAA ERRFQ I V++P ++E+I IL+GL+ +YE HH V ITD AI AA +LS RY
Sbjct: 305 KYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRY 364
Query: 195 ISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKR 254
ISDRF+PDKAIDLIDEA +K+++ + P + +LE++L +++ E +A + +
Sbjct: 365 ISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAAS 424
Query: 255 LLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKV 296
L + +L + + +K WK ++ ++S+ ++I V
Sbjct: 425 L---RDTEQRLREQVEDTKKSWKEKQGQ-ENSEVTVDDIAMV 462
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli}
SCOP: c.37.1.20
Length = 195
Score = 287 bits (737), Expect = 8e-92
Identities = 106/151 (70%), Positives = 131/151 (86%)
Query: 15 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLK 74
NPVLIGEPGVGKTAIVEGLAQRIINGEVP L +++L LD+ L+AG KYRGEFE+RLK
Sbjct: 45 NPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLK 104
Query: 75 KILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYR 134
+L +++ + ++I+FIDELHTM+G GK +G++DAGNMLKP L+RGELHC+GATTL+EYR
Sbjct: 105 GVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYR 164
Query: 135 QYIEKDAAFERRFQKILVEEPDIEETISILR 165
QYIEKDAA ERRFQK+ V EP +E+TI+ILR
Sbjct: 165 QYIEKDAALERRFQKVFVAEPSVEDTIAILR 195
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics,
structural genomics consortium, SGC, unknown function;
1.70A {Plasmodium falciparum}
Length = 187
Score = 264 bits (676), Expect = 4e-83
Identities = 90/142 (63%), Positives = 123/142 (86%), Gaps = 1/142 (0%)
Query: 15 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLK 74
NP+L+G+PGVGKTAIVEGLA +I+ G+VP+SL +K++ LD++ L+AG KYRG+FE+RLK
Sbjct: 45 NPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLK 104
Query: 75 KILKEISNNQKDIIIFIDELHTMIGTGKV-EGSIDAGNMLKPELSRGELHCIGATTLNEY 133
ILKE+ + + +++FIDE+HT++G G V EG++DAGN+LKP L+RGEL CIGATT++EY
Sbjct: 105 SILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARGELRCIGATTVSEY 164
Query: 134 RQYIEKDAAFERRFQKILVEEP 155
RQ+IEKD A ERRFQ+ILVE+P
Sbjct: 165 RQFIEKDKALERRFQQILVEQP 186
>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture,
hydrolase; 2.72A {Shigella flexneri 2A}
Length = 280
Score = 250 bits (638), Expect = 2e-76
Identities = 93/265 (35%), Positives = 131/265 (49%), Gaps = 9/265 (3%)
Query: 635 DVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHE 694
DVHGC L LL K+ + GDL+ +GP SLD LR V S+ + ++VLGNH+
Sbjct: 8 DVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSLGDSVRLVLGNHD 67
Query: 695 IHLLDVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIYY--KKYLMIHAGVAKQW 752
+HLL V I++ D +L+APD +L++WLR QPL KK +M HAG+ QW
Sbjct: 68 LHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAHAGITPQW 127
Query: 753 TAQQTIKLSHQVEKILRTSYWKNLFFKLYNHNSINWDNHLHTIHLNTIDKLQFIINTLTR 812
Q + + VE +L + + +Y NW L + +L+FI N TR
Sbjct: 128 DLQTAKECARDVEAVLSSDSYPFFLDAMYGDMPNNWSPELR-----GLGRLRFITNAFTR 182
Query: 813 TRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRKTIDITVLFGHWSTL-GLIMKPNII 871
RFC +G ++ K PWF +P + ++ FGHW++L G I
Sbjct: 183 MRFCFPNGQLDMYSKE-SPEEAPAPLKPWFAIPGPVAEEYSIAFGHWASLEGKGTPEGIY 241
Query: 872 CLDTGCVWGNKLTALCLEDRSIIQV 896
LDTGC WG LT L ED+
Sbjct: 242 ALDTGCCWGGSLTCLRWEDKQYFVQ 266
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine
tetraphosphatase, monomer, PSI- 2, protein structure
initiative, nysgrc; 2.05A {Trypanosoma brucei}
Length = 262
Score = 219 bits (560), Expect = 2e-65
Identities = 62/272 (22%), Positives = 101/272 (37%), Gaps = 61/272 (22%)
Query: 635 DVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHE 694
D+HGC+ L LL+ + K + +GDL+NKGP S +R++ + A VLGNH+
Sbjct: 26 DIHGCRAQLEDLLRAVSFKQGSDTLVAVGDLVNKGPDSFGVVRLLKRLG--AYSVLGNHD 83
Query: 695 IHLLDVLININKKSKLDTFD-----DILDAPDKKKLVSWLRTQPLAIYY--KKYLMIHAG 747
LL ++ + KK L D L + ++L P I ++ HAG
Sbjct: 84 AKLLKLVKKLGKKECLKGRDAKSSLAPLAQSIPTDVETYLSQLPHIIRIPAHNVMVAHAG 143
Query: 748 VAKQWTAQQTIKLSHQVEKILRTSYWKNLFFKLYNHNSINWDNHLHTIHLNTIDKLQFII 807
+ Q + D++ +
Sbjct: 144 LHPQRPVDRQ-----------------------------------------YEDEVTTMR 162
Query: 808 NTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRKTIDITVLFGHWSTLGL--I 865
N + + + T+ ++ + PW + TV+FGH + GL
Sbjct: 163 NLIEKEQEATGGVTLTATEE------TNDGGKPWASMWRGPE---TVVFGHDARRGLQEQ 213
Query: 866 MKPNIICLDTGCVWGNKLTALCLEDRSIIQVN 897
KP I LD+ CV+G +L+A II V
Sbjct: 214 YKPLAIGLDSRCVYGGRLSAAVFPGGCIISVP 245
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 218 bits (555), Expect = 1e-63
Identities = 42/249 (16%), Positives = 85/249 (34%), Gaps = 32/249 (12%)
Query: 6 TKENFYFTSNPVLIGEPGVGKTAIVEGLAQRII-----------------NGEVPNSLLS 48
++N+ +L+G PG GK+ I E L Q I + P L
Sbjct: 19 IEDNY--RVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLV 76
Query: 49 KKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSID 108
+ L + + +G F+D ++ + + + +E ++ G +I
Sbjct: 77 DSLKTLQPNKVAEMIENQGLFKDHVEDVNFQPVKYS-ALTSNNEECTAVVARGGTANAIR 135
Query: 109 AGNMLKP----ELSRGELHCIGATTLNEY---RQYIEK----DAAFERRFQKILVEEPDI 157
+ P +L++ ++ ++ + R+ ++ A +RR + +
Sbjct: 136 IAAVDNPVNVNKLAQDSINIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNF 195
Query: 158 EETISILR-GLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIK 216
+ IL K HH T S+ + I D F+P L D +
Sbjct: 196 LQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYC 255
Query: 217 IEIDSKPEI 225
I ++ I
Sbjct: 256 ISKFTRIVI 264
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr
protein phosphatase, ppase, manganese, sulfate, viral
protein; 2.15A {Enterobacteria phage lambda} SCOP:
d.159.1.3
Length = 221
Score = 137 bits (346), Expect = 7e-37
Identities = 53/294 (18%), Positives = 91/294 (30%), Gaps = 87/294 (29%)
Query: 608 MNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLIN 667
M KI + + I +G D+HGC +L L I + + I +GDL++
Sbjct: 1 MRYYEKIDGSKYRNIWVVG--------DLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVD 52
Query: 668 KGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVLININKKS-----------KLDTFDDI 716
+G ++++ L ++ + + V GNHE ++D L + LD +I
Sbjct: 53 RGAENVECLELI--TFPWFRAVRGNHEQMMIDGLSERGNVNHWLLNGGGWFFNLDYDKEI 110
Query: 717 LDAPDKKKLVSWLRTQPLAIYYKKYLMIHAGVAKQWTAQQTIKLSHQVEKILRTSYWKNL 776
L K L KKY++ HA
Sbjct: 111 LAKALAHKADELPLIIELVSKDKKYVICHAD----------------------------- 141
Query: 777 FFKLYNHNSINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQN 836
+D + +D Q I R R
Sbjct: 142 ---------YPFDEYEF---GKPVDHQQVI---WNRERISN------------------- 167
Query: 837 NYIPWFDLPNRKTIDITVLFGHWSTLGLIMKPNIICLDTGCVWGNKLTALCLED 890
+ T +FGH + + N + +DTG V+ LT + ++
Sbjct: 168 ---SQNGIVKEIKGADTFIFGHTPAVKPLKFANQMYIDTGAVFCGNLTLIQVQG 218
>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle,
hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A
Length = 342
Score = 111 bits (278), Expect = 9e-27
Identities = 57/357 (15%), Positives = 118/357 (33%), Gaps = 70/357 (19%)
Query: 572 FINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDL-- 629
++ Y N L +I+ + ++ + +K+I +
Sbjct: 12 YVITPISGQSTAYWICDNRLKTTSIEKLQVNRPEHCGDLPETKLSSEIKQIMPDTYLGIK 71
Query: 630 -IYGARDVHGCKKSLSILLKKIHKKSPEANF-------IFLGDLINKGPQSLDTLRMVYS 681
+ DVHG L LLKK + N+ + GD+ ++G Q + L +Y
Sbjct: 72 KVVALSDVHGQYDVLLTLLKKQKIIDSDGNWAFGEGHMVMTGDIFDRGHQVNEVLWFMYQ 131
Query: 682 MRNYAK-------IVLGNHEIHLLDVLININKKSKLDTFDDILDAPDK-----KKLVSWL 729
+ A+ +++GNHE +L + + I +K ++ WL
Sbjct: 132 LDQQARDAGGMVHLLMGNHEQMVLGGDLRYVHQRYDIATTLINRPYNKLYSADTEIGQWL 191
Query: 730 RTQPLAIYYKKYLMIHAGVAKQWTAQQTIK------LSHQVEKILRTSYWKNLFFKLYNH 783
R++ I L +H G++ +W +++ V+ ++ +L L+
Sbjct: 192 RSKNTIIKINDVLYMHGGISSEWISRELTLDKANALYRANVDASKKSLKADDLLNFLFFG 251
Query: 784 NSINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFD 843
N W R F + T + +++ N
Sbjct: 252 NGPTW----------------------YRGYFSE-TFTEAELDTILQHFNVN-------- 280
Query: 844 LPNRKTIDITVLFGHWSTLGLIMKPN--IICLDTGCVWGNKLTALCLEDRSIIQVNN 898
++ GH S ++ + +I +D+ G L LE+ +I+
Sbjct: 281 ---------HIVVGHTSQERVLGLFHNKVIAVDSSIKVGKSGELLLLENNRLIRGLY 328
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 71.0 bits (173), Expect = 1e-12
Identities = 98/592 (16%), Positives = 191/592 (32%), Gaps = 139/592 (23%)
Query: 68 EFEDRLKKIL--KEISN--NQKDIIIFIDELHTMI---GTGKVEGSIDAGNMLKPE---- 116
+ +D K IL +EI + KD + L + V+ + +L+
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV--EEVLRINYKFL 94
Query: 117 LSRGELHCIGATTLNEYRQYIE-KDAAFE--RRFQKILVEEPD-IEETISILRGLQK-KY 171
+S + + R YIE +D + + F K V + L L+ K
Sbjct: 95 MSPIKTEQRQPSM--MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 172 EVHHGVEITDPAIVAASELSYRYISDRFMPDKA--IDLIDEAAAKIKIEIDSKPEIMDKL 229
+ GV + VA + + K ++L +S +++ L
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKM-DFKIFWLNLK---------NCNSPETVLEML 202
Query: 230 ERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTL-IKDSQQ 288
++ L Q+ + D SS IK I+ ++ + L K YE L + + Q
Sbjct: 203 QKLLYQIDPNWTS---RSDHSSN-----IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 289 IKEEIEK--VRLKINKATRKS---DWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANK 343
+ + KI TR D+ + + + L+ L K + L K
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL-----K 309
Query: 344 FTLLKTKVGSEEIAEIVSRTTGIP--VSKIVQVEREKLLNIENLLCKRVVGQDEAISAVS 401
+ + + E+ T P +S I + R+ L +N + ++
Sbjct: 310 YLDCRPQDLPREV------LTTNPRRLSIIAESIRDGLATWDNW-------KHVNCDKLT 356
Query: 402 NAIRRSRSGLS--DAKRPYGSF-MFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 458
I S + L + ++ + +F P LS F+ +S + + +++
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVF--PPSAHIPT--ILLSLIWFDVIKSDVMVVVNKLH 412
Query: 459 EK--------------HSI---------------SRLIGA-------------PP---GY 473
+ SI ++ PP Y
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 474 IGYEEGGY-LTEIVRRKPYSL---ILLD------EIEK------ANSDVFNILLQILD-D 516
Y G+ L I + +L + LD +I A+ + N L Q+
Sbjct: 473 F-YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531
Query: 517 GRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYF 568
+ DN + N I+ + + I +++++A+M E + F
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICS---KYTDLLRIALMAEDEAIF 580
Score = 67.6 bits (164), Expect = 2e-11
Identities = 77/505 (15%), Positives = 144/505 (28%), Gaps = 138/505 (27%)
Query: 63 TKY---RGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPE--- 116
KY R + +L++ L E+ K+++ + ++G+GK + A ++
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPA-KNVL-----IDGVLGSGK---TWVALDVCLSYKVQ 177
Query: 117 -LSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPD--------IEETISILRGL 167
++ + N +E + D I + LR L
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 168 --QKKYE--------VHHG------------------VEITDPAIVA-ASELSYRYISDR 198
K YE V + ++TD A + +S + S
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 199 FMPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQL--KIEHEAIKR--EYDESSKKR 254
PD+ L+ + P + R + + + + + + + +
Sbjct: 298 LTPDEVKSLL---LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 255 LL-LIKKEINKLE-------------------IKYANLEKIWKYEKTLIKDSQQIKEEIE 294
L +I+ +N LE I L IW D + ++
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK--SDVMVVVNKLH 412
Query: 295 KVRL--KINKATRKS--DWQTVSKLKYGELNKLERILKEK-------SQKDIQLPNNANK 343
K L K K + S K+K L R + + D+ P
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 344 FTL-----LKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLN---IENLLCKRVVGQDE 395
F LK E + R L+ +E +
Sbjct: 473 FYSHIGHHLKNIEHPERMTLF----------------RMVFLDFRFLEQKIRH------- 509
Query: 396 AISAVSNAIRRSRSGLSDAKRPYGSFMFLG-PTGVGKTELCKTLSACIFNNEESIIRIDM 454
S NA + L K Y ++ P L + + EE++I
Sbjct: 510 -DSTAWNASGSILNTLQQLKF-YKPYICDNDPK---YERLVNAILDFLPKIEENLIC--- 561
Query: 455 SEFIEKHSISRL-IGAPPGYIGYEE 478
S++ + R+ + A I +EE
Sbjct: 562 SKYT---DLLRIALMAEDEAI-FEE 582
Score = 67.2 bits (163), Expect = 2e-11
Identities = 107/746 (14%), Positives = 216/746 (28%), Gaps = 244/746 (32%)
Query: 128 TTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAA 187
E QY KD F+ V+ D ++ + + + K E+ H + D
Sbjct: 9 FETGE-HQYQYKDILSV--FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV---- 61
Query: 188 SELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIE--HEAIKR 245
+ R L + + E++ K ++++ + IK
Sbjct: 62 -SGTLR-------------LFW-------TLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 246 EYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVR-------- 297
E + S + I ++ ++L Y + + KY + ++ ++++ + ++R
Sbjct: 101 EQRQPSMMTRMYI-EQRDRL---YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 298 --------------LKINKATRKSD----WQTVSKLKYGE--LNKLERILKEKSQKDIQL 337
K K D W + E L L+++L +
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 338 PNNANKFTLLKTKVGSEEIAEIVSR---TTGIPVSKIV--QVEREKLLNIENLLCKRVV- 391
++++ K+ I + R + +V V+ K N NL CK ++
Sbjct: 217 SDHSS-----NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271
Query: 392 GQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIR 451
+ + ++ +A + L + E+ L +
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSM-----------TLTPDEVKSLLLKYL--------- 311
Query: 452 IDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILL 511
L P E++ P L ++ E
Sbjct: 312 --------DCRPQDL---PR------------EVLTTNPRRLSIIAE------------- 335
Query: 512 QILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPE 571
+ D N++ ++ DK+ II+ ++ +R
Sbjct: 336 ------SIRDGLATWDNWK--------HVNCDKL-------TTIIESSLNVLEPAEYRKM 374
Query: 572 FINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIY 631
F D + VF I L I D+I
Sbjct: 375 F----DRLSVFPP--------------------------SAHIPTILLSLIWF---DVIK 401
Query: 632 GARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLG 691
DV +++ K+HK S L+ K P+ S+
Sbjct: 402 --SDV-------MVVVNKLHKYS----------LVEKQPK-----ESTISI--------- 428
Query: 692 NHEIHLLDVLININKKSKLDTFDDILDA-PDKKKLVSW-LRTQPLAIYYKKYLMIHAGVA 749
I+ L++ + + + L I+D K S L L Y+ ++ H
Sbjct: 429 -PSIY-LELKVKLENEYALH--RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 750 KQWTAQQTIKLSHQVEKILRTSYWKNLFF---KLYNHNSINWDNHLHTIHLNTIDKLQFI 806
+ + + R + + F K+ H+S W+ LNT+ +L+F
Sbjct: 485 EH----------PERMTLFRMVFL-DFRFLEQKI-RHDSTAWNASGSI--LNTLQQLKFY 530
Query: 807 INTLTRTRFCKIDGTIEFIKKNIKNN 832
+ C D E + I +
Sbjct: 531 -----KPYICDNDPKYERLVNAILDF 551
Score = 59.5 bits (143), Expect = 4e-09
Identities = 72/497 (14%), Positives = 140/497 (28%), Gaps = 189/497 (38%)
Query: 442 IFNNEESIIR----IDMSEF----IEKHSISRLIGAPPGYIGYEEGGY-LTEIVRRKPYS 492
+ E++ + D+ + + K I +I + G L + K
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA----VSGTLRLFWTLLSKQEE 77
Query: 493 LI--LLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEK 550
++ ++E+ + N + L+ + T+ R ++ R I E+
Sbjct: 78 MVQKFVEEVLRIN---YKFLMSPIK----TEQRQPSMMTRMYI---------------EQ 115
Query: 551 GDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNM 610
D+ + N+ ++ F ++R+ + L+ LL+
Sbjct: 116 RDR------LYNDNQV-FAKYNVSRLQPYLK-------------------LRQALLE--- 146
Query: 611 DLKISKAALKKISNIGFDLIYGARDVHGCKKS---------LSILLK---KIH------K 652
L+ N+ LI G V G K+ + K KI
Sbjct: 147 --------LRPAKNV---LIDG---VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 653 KSPEA--------------NFIFLGDLINKGPQSLDT----LRMVYSMRNYAKIVLGNHE 694
SPE N+ D + + + LR + + Y
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE-------- 244
Query: 695 IHLLDVLININKKSKLDTFD---------------DILDAPDKKKLVSWLRTQPLAIYYK 739
+ L VL+N+ + F+ D L A + + L
Sbjct: 245 -NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 740 KYLMIHAGVAKQWTAQQTIKLSHQVEKI--LRTSYWKNLFFKLYNHNSINWDNHLHTIHL 797
K L + K + + L +V R S + + WDN H
Sbjct: 304 KSL-----LLK-YLDCRPQDLPREVLTTNPRRLS----IIAESIRDGLATWDNWKHV--- 350
Query: 798 NTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNY-----------IP------ 840
DKL II + ++ ++ ++ + IP
Sbjct: 351 -NCDKLTTII-----------ESSLN----VLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 841 -WFDLPNRKTIDITVLF 856
WFD+ + +
Sbjct: 395 IWFDVIKSDVMVVVNKL 411
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural
genomics, MCSG, Zn binding, hydrolase; 1.95A
{Sphaerobacter thermophilus}
Length = 246
Score = 67.4 bits (164), Expect = 2e-12
Identities = 19/113 (16%), Positives = 42/113 (37%), Gaps = 4/113 (3%)
Query: 635 DVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHE 694
DVH +L +L + + LGD++ GP+ + + +V + V+GNH+
Sbjct: 11 DVHANLVALEAVLSDAGRVD---DIWSLGDIVGYGPRPRECVELVRVLAPNI-SVIGNHD 66
Query: 695 IHLLDVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIYYKKYLMIHAG 747
+ L + + + +L + P + + ++H
Sbjct: 67 WACIGRLSLDEFNPVARFASYWTTMQLQAEHLQYLESLPNRMIDGDWTVVHGS 119
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 68.2 bits (166), Expect = 1e-11
Identities = 100/580 (17%), Positives = 194/580 (33%), Gaps = 170/580 (29%)
Query: 265 LEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRK--SDWQTVSKLKYGELNK 322
L + + +LE + + Q++E+ K + + T +D + + EL
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNK---ILPEPTEGFAADDEPTTPA---EL-- 60
Query: 323 LERILKEKSQKDIQLPNNANKFT-LLKTKVGSEEIA-----EIVSRTTGIPVSKIVQVER 376
+ + L S ++ P+ +F +L + E +I + + + +
Sbjct: 61 VGKFLGYVSSL-VE-PSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 377 EKLLNIENLLCKRVVGQD----EAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKT 432
K L I+N + R++ + ++ SA+ A+ + L F G G G T
Sbjct: 119 TKEL-IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL------VAIF---G--GQGNT 166
Query: 433 ELC-KTLSACIFNNEESIIRIDMSEFIEKHS--ISRLIGAPPGYIG-YEEG--------- 479
+ + L ++ ++ + I+ + +S LI + +G
Sbjct: 167 DDYFEELRD-LYQTYHVLVG----DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 480 -------GYLTEIVRRKPYS--LILLDEIEKANSDVFNILLQIL--DDGRLTDN-RGRTI 527
YL I P S LI + I+ A+ + + ++L G L +G T
Sbjct: 222 PSNTPDKDYLLSI----PISCPLIGV--IQLAH---YVVTAKLLGFTPGELRSYLKGATG 272
Query: 528 NFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI----------NRID 577
+ + ++ + +D + ++ I + F FI +
Sbjct: 273 HSQG-LVTAVAIAETDSWESFFVSVRKAITVL--------F---FIGVRCYEAYPNTSLP 320
Query: 578 DIIVFRYLNRKN-----ILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYG 632
I+ L +LSI+N+ +++ + K N L K++ I L+ G
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG----KQVE-IS--LVNG 373
Query: 633 ARD--VHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVL 690
A++ V G +SL L + K K P LD R+ +S R K+
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRKA--------------KAPSGLDQSRIPFSER---KLKF 416
Query: 691 GN---------HEIHLLDVLININ----------KKSKL-----DTFD--DI--LDAPDK 722
N H L+ IN + DTFD D+ L
Sbjct: 417 SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS 476
Query: 723 KKLVSWLRTQPLAIYYKKYLMIHAGVAKQWTAQQTIKLSH 762
+++V + P + W K +H
Sbjct: 477 ERIVDCIIRLP----------VK------WETTTQFKATH 500
Score = 56.6 bits (136), Expect = 4e-08
Identities = 56/338 (16%), Positives = 101/338 (29%), Gaps = 125/338 (36%)
Query: 11 YFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLL---------SKKILLLDIALLLA 61
Y S P+ P +G + + + G P L S+ ++ A+ +A
Sbjct: 230 YLLSIPISC--PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV---TAVAIA 284
Query: 62 GTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEG-------SIDAGNMLK 114
T F ++K + ++F IG V S+ ++L+
Sbjct: 285 ETDSWESFFVSVRKAIT---------VLFF------IG---VRCYEAYPNTSLPP-SILE 325
Query: 115 PELSRGE------LHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISI----- 163
L E L T ++ ++ + L +E IS+
Sbjct: 326 DSLENNEGVPSPMLSISNLT-----QEQVQDYV---NKTNSHLPAGKQVE--ISLVNGAK 375
Query: 164 ----------LRGLQ---KKYEVHHGVEITDPAIVAASELSYR--YISDRFMP------- 201
L GL +K + G D + + SE R S+RF+P
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKAPSG---LDQSRIPFSE---RKLKFSNRFLPVASPFHS 429
Query: 202 ---DKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIK-----REYDESSKK 253
A DLI++ K + ++K ++I R S +
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAK------------DIQIPVYDTFDGSDLRVLSGSISE 477
Query: 254 RL--LLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQI 289
R+ +I+ + W E T + I
Sbjct: 478 RIVDCIIRLPVK------------W--ETTTQFKATHI 501
Score = 48.9 bits (116), Expect = 8e-06
Identities = 55/322 (17%), Positives = 100/322 (31%), Gaps = 128/322 (39%)
Query: 76 ILKEISNNQKDIIIF--------IDELHT-MIGTGKVEGSIDAGNMLK---PELS----- 118
IL + NN ++ I I E ++ MI V+G + + K +
Sbjct: 1661 ILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR 1720
Query: 119 --RGELHCIGATTLNEYRQ----YIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYE 172
+G L AT ++ Q +EK AAFE D++ +GL
Sbjct: 1721 SEKGLLS---AT---QFTQPALTLMEK-AAFE-----------DLKS-----KGLIPADA 1757
Query: 173 VH--H--GVEITDPAIVAASE-LSYRYISDRFMPDKAIDL-------IDEAAAKIKIEID 220
H G E A+ + ++ +S I +++ + A + E+
Sbjct: 1758 TFAGHSLG-EYA--ALASLADVMS---IES------LVEVVFYRGMTMQVAVPRD--ELG 1803
Query: 221 SKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEI-NKLEIKYANLEKIWKYE 279
M + + EA++ + K+ L+ EI N Y N+E
Sbjct: 1804 RSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV--EIVN-----Y-NVE------ 1849
Query: 280 KTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGE---LNKLERILKEKSQKDIQ 336
+QQ V + G+ L+ + +L + I
Sbjct: 1850 ------NQQY------V---------------AA----GDLRALDTVTNVLNFIKLQKI- 1877
Query: 337 LPNNANKFTLLKTKVGSEEIAE 358
L+ + EE+
Sbjct: 1878 ------DIIELQKSLSLEEVEG 1893
Score = 47.0 bits (111), Expect = 3e-05
Identities = 49/297 (16%), Positives = 83/297 (27%), Gaps = 121/297 (40%)
Query: 608 MNMDLKISKAALKKISNIGFDLIYGARDVHGCKK-SLSILLKKIHKKSPEANFIFLGDLI 666
M MDL + A + + ++ D H SIL I +P I G
Sbjct: 1631 MGMDLYKTSKAAQDV----WNRA----DNHFKDTYGFSIL--DIVINNPVNLTIHFG--- 1677
Query: 667 NKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVLININKKSKLDTF---DDILDAPDKK 723
G + +R YS + IV G + + IN+ S TF +L A
Sbjct: 1678 --GEKGKR-IRENYSAMIFETIVDGK--LKTEKIFKEINEHSTSYTFRSEKGLLSATQ-- 1730
Query: 724 KLVSWLRTQP------LAIYY--KKYLMI--------H--------AGVAKQWTAQQTIK 759
TQP A + K +I H A +A + + ++
Sbjct: 1731 ------FTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVE 1784
Query: 760 LSHQ-----------------------------------------VEKILRTSYWKNLFF 778
+ VE++ + + W
Sbjct: 1785 VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGW---LV 1841
Query: 779 KLYNHNSINWDNHLHTI----HLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKN 831
++ N+N N L +D + ++N F K+ + I
Sbjct: 1842 EIVNYNVENQ-----QYVAAGDLRALDTVTNVLN------FIKL--------QKIDI 1879
Score = 40.4 bits (94), Expect = 0.003
Identities = 58/343 (16%), Positives = 96/343 (27%), Gaps = 153/343 (44%)
Query: 428 GVGKTELCKTLSA--CIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEI 485
G+G +L KT A ++N R D H G + +I
Sbjct: 1630 GMGM-DLYKTSKAAQDVWN------RAD------NHFKDTY------------GFSILDI 1664
Query: 486 VRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKI 545
V P +L I G +G+ I R M D
Sbjct: 1665 VINNPVNLT------------------IHFGGE----KGKRI--RENYSAMIFETIVDGK 1700
Query: 546 KEMEKGDKEIIKLAVMNEV--KIYFRPEFINRIDDIIVFRYLNR-KN----IL--SIANI 596
+ EK KEI NE FR E + L+ + + A
Sbjct: 1701 LKTEKIFKEI------NEHSTSYTFRSE-----KGL-----LSATQFTQPALTLMEKA-- 1742
Query: 597 QLNILKNKLLKMNMDLKISKA--------ALKKISN-IGF-DLIY-----G-------AR 634
LK+K L + A AL +++ + L+ G R
Sbjct: 1743 AFEDLKSKGLI---PADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPR 1799
Query: 635 DVHG------------------CKKSLSILLKKIHKKSPE----ANFIFLGDLIN-KGPQ 671
D G +++L +++++ K++ N+ N + Q
Sbjct: 1800 DELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY-------NVENQQ 1852
Query: 672 SLDTLRMVYSMRNYAKIVLGNHEIHLLDVLINI---NKKSKLD 711
V ++ LD + N+ K K+D
Sbjct: 1853 ----------------YVAAG-DLRALDTVTNVLNFIKLQKID 1878
Score = 35.8 bits (82), Expect = 0.083
Identities = 51/289 (17%), Positives = 95/289 (32%), Gaps = 87/289 (30%)
Query: 321 NKLERILKEK---SQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVERE 377
N+ + K+ S DI + NN T+ + I E S + +++ E
Sbjct: 1647 NRADNHFKDTYGFSILDIVI-NNPVNLTIHFGGEKGKRIRENYSAMIFETIVDG-KLKTE 1704
Query: 378 KLLNIENLLCKRVV--GQDE----------AISAVSNAI-RRSRS-GLSDAKRPY-G-SF 421
K+ N + A++ + A +S GL A + G S
Sbjct: 1705 KIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS- 1763
Query: 422 MFLGPTGVGKTELCKTLSAC--IFNNEESI----IR-IDMSEFIEKHSISR----LIGAP 470
LG E L++ + + E + R + M + + + R +I
Sbjct: 1764 --LG-------EYA-ALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN 1813
Query: 471 PGYIGY---EEGGYLTEIVRR--KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGR 525
PG + +E L +V R K ++ EI N +N+ +
Sbjct: 1814 PGRVAASFSQEA--LQYVVERVGKRTGWLV--EI--VN---YNV-------------ENQ 1851
Query: 526 TI----NFR--NTIIVMTSNLGSDKIKEMEKGDKEIIKLAV---MNEVK 565
+ R +T+ + + + KI II+L + EV+
Sbjct: 1852 QYVAAGDLRALDTVTNVLNFIKLQKID--------IIELQKSLSLEEVE 1892
Score = 35.4 bits (81), Expect = 0.096
Identities = 40/229 (17%), Positives = 72/229 (31%), Gaps = 71/229 (31%)
Query: 7 KENFYFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNS---LLSKKILLLDIALLLAGT 63
+E F + EP EG A + P + L+ K L ++ L+ +
Sbjct: 34 QEQFNKI-----LPEP-------TEGFAA----DDEPTTPAELVGK--FLGYVSSLVEPS 75
Query: 64 KYRGEFEDRLKKILKEISNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG 120
K G+F+ L L E N DI H + + D +
Sbjct: 76 K-VGQFDQVLNLCLTEFENCYLEGNDI-------HALAAK--LLQEND-----TTLVKTK 120
Query: 121 ELHCIGATTLNEYRQYIEKDAAFERRFQK----ILVEEPDIEET--ISILRG-------- 166
EL I + YI +R F K L ++I G
Sbjct: 121 EL--I--------KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF 170
Query: 167 --LQKKYEVHHGVEITDPAIVAAS----ELSYRYISDRFMPDKAIDLID 209
L+ Y+ +H + I ++ EL + + + +++++
Sbjct: 171 EELRDLYQTYHV--LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA
replication initiation, DNA BIND protein, AAA+ ATPase;
HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11
c.37.1.20 PDB: 1w5t_A*
Length = 412
Score = 61.8 bits (149), Expect = 5e-10
Identities = 34/296 (11%), Positives = 87/296 (29%), Gaps = 31/296 (10%)
Query: 20 GEPGVGKTAIVEGLAQRI---------------INGEVPNSLLSKKILLLDIALLLAGTK 64
G G+GKT + + +R+ +N + IL L + +
Sbjct: 59 GRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN--LYTILSLIVRQTGYPIQ 116
Query: 65 YRGE-FEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSI-----DAGNMLKPELS 118
RG D LK ++ + +++ +DE +M+ + ++ +
Sbjct: 117 VRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDG 176
Query: 119 RGELHCIGATTLNEYRQYIEKD--AAFERRFQKILVEEPDIEETISILRGLQKKYEVHHG 176
+ + + Y+ + + K+ + E +IL Q+
Sbjct: 177 VNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILE--QRAELGLRD 234
Query: 177 VEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSK--PEIMDKLERRLI 234
+ S++ +AI + A + +++ K
Sbjct: 235 TVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294
Query: 235 QLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIK 290
I+ ++ +L + E +++ N + + + +K
Sbjct: 295 AASIQTHELEALSIHE--LIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVK 348
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP:
d.159.1.5 PDB: 2gju_A
Length = 252
Score = 57.1 bits (137), Expect = 6e-09
Identities = 15/132 (11%), Positives = 45/132 (34%), Gaps = 19/132 (14%)
Query: 635 DVHGCKKSLSILLKKIHKKSPEAN----FIFLGDLINKGPQSLDTLRMVYSM--RNYAKI 688
++ G +L+ L +I + E + LG+++ P + + ++ + + KI
Sbjct: 9 NIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIEVIKDLTKKENVKI 68
Query: 689 VLGNHEIHLLDVLININKKSKLDTFDDILDAPD---------KKKLVSWLRTQPLAIYY- 738
+ G ++ + + +D + + +LR P+ +
Sbjct: 69 IRGKYDQIIAMSDPHATDPGYIDKLELPGHVKKALKFTWEKLGHEGREYLRDLPIYLVDK 128
Query: 739 ---KKYLMIHAG 747
+ ++
Sbjct: 129 IGGNEVFGVYGS 140
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric
AP4A hydrolase, phosphodiesterase, binding, Mn2+
binding, hydrolase; 1.90A {Streptococcus pneumoniae}
PDB: 3qfn_A 3qfo_A*
Length = 270
Score = 53.1 bits (127), Expect = 1e-07
Identities = 20/127 (15%), Positives = 39/127 (30%), Gaps = 11/127 (8%)
Query: 635 DVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHE 694
D+HG +L +L + + + LGD++ G L ++ + VLGN E
Sbjct: 19 DIHGNTTALEAVLADARQLGVDE-YWLLGDILMPGTGRRRILDLLDQL-PITARVLGNWE 76
Query: 695 IHLLDVLI---------NINKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIYYKKYLMIH 745
L + + + + + + L + + H
Sbjct: 77 DSLWHGVRKELDSTRPSQRYLLRQCQYVLEEISLEEIEVLHNQPLQIHRQFGDLTVGISH 136
Query: 746 AGVAKQW 752
K W
Sbjct: 137 HLPDKNW 143
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold,
hydro; HET: ADP; 2.91A {Escherichia coli}
Length = 500
Score = 52.1 bits (125), Expect = 5e-07
Identities = 32/140 (22%), Positives = 50/140 (35%), Gaps = 17/140 (12%)
Query: 376 REKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELC 435
E++ + + L K + + AI A LS S LGP G+ K+ +
Sbjct: 10 AERISRLSSSLEKGLYERSHAIRLCLLAA------LSG-----ESVFLLGPPGIAKSLIA 58
Query: 436 KTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYS-LI 494
+ L N M+ F + G +EG Y P + ++
Sbjct: 59 RRLKFAFQNARAF--EYLMTRFSTP---EEVFGPLSIQALKDEGRYERLTSGYLPEAEIV 113
Query: 495 LLDEIEKANSDVFNILLQIL 514
LDEI KA + N LL +
Sbjct: 114 FLDEIWKAGPAILNTLLTAI 133
Score = 31.6 bits (72), Expect = 1.3
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 18 LIGEPGVGKTAIVEGLAQRIINGE 41
L+G PG+ K+ I L N
Sbjct: 46 LLGPPGIAKSLIARRLKFAFQNAR 69
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 49.8 bits (119), Expect = 3e-06
Identities = 43/175 (24%), Positives = 67/175 (38%), Gaps = 30/175 (17%)
Query: 18 LIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKIL 77
L G PG GKT I +A L++ +++ K GE E L+K
Sbjct: 243 LYGPPGTGKTLIARAVANE----------TGAFFFLINGPEIMS--KLAGESESNLRKAF 290
Query: 78 KEISNNQKDIIIFIDELHTMI-----GTGKVEGSIDA--GNMLKPELSRGELHCIGATTL 130
+E N IIFIDEL + G+VE I + ++ R + + AT
Sbjct: 291 EEAEKNAP-AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN- 348
Query: 131 NEYRQYIEK-DAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITD 181
D A R RF + + + PD + IL+ K ++ V++
Sbjct: 349 -----RPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQ 398
Score = 35.9 bits (83), Expect = 0.060
Identities = 39/264 (14%), Positives = 83/264 (31%), Gaps = 34/264 (12%)
Query: 279 EKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLP 338
+ I+ +K L I+ + R +++ ++
Sbjct: 98 DVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGG 157
Query: 339 NNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAIS 398
A +F +++T IV+ T I ++ ++ + V G + ++
Sbjct: 158 MRAVEFKVVETDPSP---YCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDVGGCRKQLA 214
Query: 399 A----VSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDM 454
V +R + +P + GP G GKT + + ++ I+
Sbjct: 215 QIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLING 271
Query: 455 SEFIEKHSISRLIGAPPGYIGYEEGGYLTEI---VRRKPYSLILLDEI-------EKANS 504
E ++ G E L + + ++I +DE+ EK +
Sbjct: 272 PE---------IMSKLAG----ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG 318
Query: 505 DVFN-ILLQILDDGRLTDNRGRTI 527
+V I+ Q+L R I
Sbjct: 319 EVERRIVSQLLTLMDGLKQRAHVI 342
Score = 35.5 bits (82), Expect = 0.084
Identities = 42/183 (22%), Positives = 73/183 (39%), Gaps = 39/183 (21%)
Query: 18 LIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKK---ILLLDIALLLAGTKYRGEFEDRLK 74
G PG GKT + + +A E + +S K +L T + GE E ++
Sbjct: 516 FYGPPGCGKTLLAKAIA-----NECQANFISIKGPELL----------TMWFGESEANVR 560
Query: 75 KILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAG------NMLKPEL----SRGELHC 124
+I + ++F DEL ++ G N + E+ ++ +
Sbjct: 561 EIFDKARQAAP-CVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFI 619
Query: 125 IGATTLNEYR-QYIEKDAAFER--RFQKIL-VEEPDIEETISILRGLQKKYEVHHGVEIT 180
IGAT N R I D A R R +++ + PD + ++IL+ +K V V++
Sbjct: 620 IGAT--N--RPDII--DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLE 673
Query: 181 DPA 183
A
Sbjct: 674 FLA 676
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 45.6 bits (108), Expect = 6e-05
Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 30/164 (18%)
Query: 18 LIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKIL 77
L G PG GKT + + +A E + + + A L +KY GE E +L + L
Sbjct: 153 LFGPPGNGKTMLAKAVA-----AESNATFFN-----ISAASLT--SKYVGEGE-KLVRAL 199
Query: 78 KEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL--------SRGELH--CIGA 127
++ + IIFID++ +++ + EG DA LK E S G+ +GA
Sbjct: 200 FAVARELQPSIIFIDQVDSLLCE-RREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGA 258
Query: 128 TTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKK 170
T + E D A RRF K + V P+ E + +L+ L K
Sbjct: 259 TNRPQ-----ELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCK 297
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding; HET:
DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 43.1 bits (102), Expect = 8e-05
Identities = 26/135 (19%), Positives = 45/135 (33%), Gaps = 32/135 (23%)
Query: 420 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYI----- 474
F+G GVGKT L+ EK I I
Sbjct: 40 GLTFVGSPGVGKT----HLAVATLK-----------AIYEKKGIRGYFFDTKDLIFRLKH 84
Query: 475 GYEEGGYLTEIVRRKPYSLILLDEI--EKANSDVFNILLQILDDGRLTDNRGRTINFRNT 532
+EG + +++LD++ E+ + ++ I+ R N ++T
Sbjct: 85 LMDEGKDTKFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITY--------RYNNLKST 136
Query: 533 IIVMTSNLGSDKIKE 547
II T+N + +E
Sbjct: 137 II--TTNYSLQREEE 149
Score = 30.0 bits (68), Expect = 2.0
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 15 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLK 74
+G PGVGKT + + I + + D L+ K E +
Sbjct: 40 GLTFVGSPGVGKTHLAVATLKAIYEKK------GIRGYFFDTKDLIFRLK-HLMDEGKDT 92
Query: 75 KILKEISNNQKDIIIFIDEL 94
K LK + N+ +++ +D+L
Sbjct: 93 KFLKTVLNS--PVLV-LDDL 109
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 44.8 bits (106), Expect = 1e-04
Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 30/164 (18%)
Query: 18 LIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKIL 77
L G PG GKT I + +A + + S + + L +K+ GE E ++ + L
Sbjct: 122 LFGPPGTGKTLIGKCIA-----SQSGATFFS-----ISASSLT--SKWVGEGE-KMVRAL 168
Query: 78 KEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL----------SRGELHCIGA 127
++ Q+ +IFIDE+ +++ + +G ++ +K E S + +GA
Sbjct: 169 FAVARCQQPAVIFIDEIDSLLSQ-RGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGA 227
Query: 128 TTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKK 170
T + E D A RR K + + P+ I+ L K
Sbjct: 228 TNRPQ-----EIDEAARRRLVKRLYIPLPEASARKQIVINLMSK 266
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic
subunit alpha isoform; protein-protein complex, heat
repeat, signaling protein; HET: OKA; 2.60A {Homo
sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C*
3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C*
2nyl_C*
Length = 309
Score = 42.9 bits (102), Expect = 3e-04
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 9/66 (13%)
Query: 635 DVHGCKKSLSILLK--KIHKKSPEANFIFLGDLINKGPQSLDT--LRMVYSMRNYAKIVL 690
DVHG L++ +I KSP+ N++F+GD +++G S++T L + +R +I +
Sbjct: 57 DVHG---QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITI 113
Query: 691 --GNHE 694
GNHE
Sbjct: 114 LRGNHE 119
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 43.4 bits (102), Expect = 3e-04
Identities = 40/168 (23%), Positives = 67/168 (39%), Gaps = 38/168 (22%)
Query: 18 LIGEPGVGKTAIVEGLAQRI-----INGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDR 72
L G PG GK+ + + +A + L+SK + GE E +
Sbjct: 172 LFGPPGTGKSYLAKAVATEANNSTFFSISSS-DLVSK---------------WLGESE-K 214
Query: 73 LKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL---------SRGELH 123
L K L +++ K IIFIDE+ ++ G+ + E +A +K E +
Sbjct: 215 LVKNLFQLARENKPSIIFIDEIDSLCGS-RSENESEAARRIKTEFLVQMQGVGVDNDGIL 273
Query: 124 CIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKK 170
+GAT + D+A RRF+K I + P+ ++ R
Sbjct: 274 VLGATNIPW-----VLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGS 316
Score = 35.7 bits (82), Expect = 0.070
Identities = 28/191 (14%), Positives = 70/191 (36%), Gaps = 15/191 (7%)
Query: 273 EKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQ 332
E + Y+ + +K E + + K + + +++ ++ L K E+ ++ +
Sbjct: 29 EALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKKKEKKPQKPVK 88
Query: 333 KDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVG 392
++ P + + + + Q++ ++ N+ V G
Sbjct: 89 EEQSGPVDEKGNDSDGEAESDDPEKKKL----------QNQLQGAIVIERPNVKWSDVAG 138
Query: 393 QDEAISAVSNAI---RRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI 449
+ A A+ A+ + + + P+ + GP G GK+ L K ++ N +
Sbjct: 139 LEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA--NNSTF 196
Query: 450 IRIDMSEFIEK 460
I S+ + K
Sbjct: 197 FSISSSDLVSK 207
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter
baumannii} PDB: 2xkk_A*
Length = 767
Score = 43.1 bits (102), Expect = 4e-04
Identities = 23/109 (21%), Positives = 37/109 (33%), Gaps = 30/109 (27%)
Query: 203 KAIDLIDEAAAKIKIEIDSKPEIMDK-----------LERRLIQL-KIEHEAIKREYDES 250
A ID I+ E KP +M+ LE +L L K+E I+ E DE
Sbjct: 649 IAYLDIDTVIRIIREEDQPKPVLMEHFNIDEIQAEAILELKLRHLAKLEEMEIRHEQDE- 707
Query: 251 SKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLK 299
+ + + + N E + I E+++ K
Sbjct: 708 -------LSAKAAIIREQLENPESLKNL----------IISELKEDAKK 739
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding,
hydrolase; 2.70A {Drosophila melanogaster}
Length = 297
Score = 42.3 bits (100), Expect = 4e-04
Identities = 43/165 (26%), Positives = 69/165 (41%), Gaps = 31/165 (18%)
Query: 18 LIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKIL 77
L G PG GKT + +A E + L+ + A L +KY G+ E +L + L
Sbjct: 59 LFGPPGNGKTLLARAVA-----TECSATFLN-----ISAASLT--SKYVGDGE-KLVRAL 105
Query: 78 KEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL--------SRGELH---CIG 126
++ + + IIFIDE+ +++ + +A LK E + +
Sbjct: 106 FAVARHMQPSIIFIDEVDSLLSE-RSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLA 164
Query: 127 ATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKK 170
AT + E D A RRF K + V PD + +L L +K
Sbjct: 165 ATNRPQ-----ELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQK 204
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta
domain, C-terminal helix, ATP-binding, E
nucleotide-binding; 2.90A {Saccharomyces cerevisiae}
PDB: 2qpa_A*
Length = 355
Score = 42.5 bits (100), Expect = 4e-04
Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 37/168 (22%)
Query: 17 VLIGEPGVGKTAIVEGLAQRI----INGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDR 72
+L G PG GK+ + + +A + L+SK + GE E +
Sbjct: 88 LLYGPPGTGKSYLAKAVATEANSTFFSVSSS-DLVSK---------------WMGESE-K 130
Query: 73 LKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL---------SRGELH 123
L K L ++ K IIFID++ + GT + EG +A +K EL +
Sbjct: 131 LVKQLFAMARENKPSIIFIDQVDALTGT-RGEGESEASRRIKTELLVQMNGVGNDSQGVL 189
Query: 124 CIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKK 170
+GAT + + D+A RRF++ I + PD+ ++
Sbjct: 190 VLGATNIPW-----QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGD 232
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 41.6 bits (98), Expect = 4e-04
Identities = 26/142 (18%), Positives = 46/142 (32%), Gaps = 32/142 (22%)
Query: 413 DAKRPYGSFMFLGPTGVGKTELCKTLSACIFN----NEESIIRIDMSEFIEKHSISRLIG 468
+ + G GVGKT L A I N S + + + E + S
Sbjct: 49 EPGKKMKGLYLHGSFGVGKT----YLLAAIANELAKRNVSSLIVYVPELFRELKHS---- 100
Query: 469 APPGYIGYEEGGYLTEIVRRKPYSLILLDEI--EKANSDVFN-ILLQILDDGRLTDNRGR 525
++ ++ K +++LD++ E +S V + + IL R
Sbjct: 101 -------LQDQTMNEKLDYIKKVPVLMLDDLGAEAMSSWVRDDVFGPILQY--------R 145
Query: 526 TINFRNTIIVMTSNLGSDKIKE 547
T TSN ++
Sbjct: 146 MFENLPTFF--TSNFDMQQLAH 165
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling,
decatenation, DNA bindi topology; 3.00A {Escherichia
coli}
Length = 716
Score = 42.9 bits (102), Expect = 4e-04
Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 30/109 (27%)
Query: 203 KAIDLIDEAAAKIKIEIDSKPEIMDK-----------LERRLIQL-KIEHEAIKREYDES 250
A IDE I+ E + KP +M + LE +L L K+E I+ E E
Sbjct: 355 VAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSE- 413
Query: 251 SKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLK 299
++KE ++L+ A+ K+ +K+E++
Sbjct: 414 -------LEKERDQLQGILASERKMNNL----------LKKELQADAQA 445
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 42.1 bits (99), Expect = 5e-04
Identities = 29/140 (20%), Positives = 49/140 (35%), Gaps = 31/140 (22%)
Query: 415 KRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYI 474
G G+GK+ L A + + E EK +S + P +
Sbjct: 149 SAEQKGLYLYGDMGIGKS----YLLAAMAH-----------ELSEKKGVSTTLLHFPSFA 193
Query: 475 -----GYEEGGYLTEIVRRKPYSLILLDEI--EKANSDVFNILLQILDDGRLTDNRGRTI 527
G EI K +++LD+I E+A S V + +LQ++ R+ +
Sbjct: 194 IDVKNAISNGSVKEEIDAVKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEE----- 248
Query: 528 NFRNTIIVMTSNLGSDKIKE 547
T TSN ++
Sbjct: 249 --LPTFF--TSNYSFADLER 264
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase,
ATP-binding cassette, ATP-binding, endosome, MEM
nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
PDB: 3eih_A* 2rko_A 3mhv_C
Length = 322
Score = 40.8 bits (96), Expect = 0.001
Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 37/167 (22%)
Query: 18 LIGEPGVGKTAIVEGLAQRI----INGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRL 73
L G PG GK+ + + +A + L+S K+ GE E +L
Sbjct: 56 LYGPPGTGKSYLAKAVATEANSTFFSVSSS-DLVS---------------KWMGESE-KL 98
Query: 74 KKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL---------SRGELHC 124
K L ++ K IIFID++ + GT + EG +A +K EL +
Sbjct: 99 VKQLFAMARENKPSIIFIDQVDALTGT-RGEGESEASRRIKTELLVQMNGVGNDSQGVLV 157
Query: 125 IGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKK 170
+GAT + + D+A RRF++ I + PD+ ++
Sbjct: 158 LGATNIPW-----QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGD 199
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 40.9 bits (95), Expect = 0.001
Identities = 29/295 (9%), Positives = 78/295 (26%), Gaps = 16/295 (5%)
Query: 2 FHNHTKENFYFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA 61
N + + L+G PG GKT + L + + + + + ++
Sbjct: 33 LGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIG 92
Query: 62 GTKYRGEFE---------DRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNM 112
+ L +++ + + + +D+ + + +
Sbjct: 93 EIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA--PDILSTFIRLGQ 150
Query: 113 LKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYE 172
+L + + + ++ I ++ IL +
Sbjct: 151 EADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILL--DRAKA 208
Query: 173 VHHGVEITDPAI---VAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIMDKL 229
++ + + ++R AID++ +A + D
Sbjct: 209 GLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVR 268
Query: 230 ERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIK 284
+ L E + K LL I + + Y + K + +
Sbjct: 269 KSSKEVLFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCE 323
Score = 39.8 bits (92), Expect = 0.003
Identities = 31/206 (15%), Positives = 66/206 (32%), Gaps = 25/206 (12%)
Query: 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE 447
KR+ +++ + + + + L + Y LG G GKT + L +
Sbjct: 17 KRLPHREQQLQQLDILLG---NWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT 73
Query: 448 -SIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIV--------RRKPYSLILLDE 498
+ I+ + +I I G E + R Y ++LD+
Sbjct: 74 ARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDD 133
Query: 499 IEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKL 558
D+ + +++ + +V+ + + D
Sbjct: 134 AFNLAPDILSTFIRLGQEADKLGA-------FRIALVIVGH----NDAVLNNLDPST--R 180
Query: 559 AVMNEVKIYFRPEFINRIDDIIVFRY 584
+M + I F P ++I DI++ R
Sbjct: 181 GIMGKYVIRFSPYTKDQIFDILLDRA 206
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 40.8 bits (96), Expect = 0.002
Identities = 39/168 (23%), Positives = 67/168 (39%), Gaps = 38/168 (22%)
Query: 18 LIGEPGVGKTAIVEGLAQRI-----INGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDR 72
L G PG GK+ + + +A + L+S K+ GE E +
Sbjct: 50 LFGPPGTGKSYLAKAVATEANNSTFFSISSS-DLVS---------------KWLGESE-K 92
Query: 73 LKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL---------SRGELH 123
L K L +++ K IIFIDE+ ++ G+ + E +A +K E +
Sbjct: 93 LVKNLFQLARENKPSIIFIDEIDSLCGS-RSENESEAARRIKTEFLVQMQGVGVDNDGIL 151
Query: 124 CIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKK 170
+GAT + D+A RRF+K I + P+ ++ +
Sbjct: 152 VLGATNIPW-----VLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGT 194
>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit;
carbohydrate metabolism, cell cycle, cell division; HET:
1ZN; 1.63A {Homo sapiens} PDB: 3e7b_A* 3egg_A* 3egh_A*
3hvq_A 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A
2o8a_A 1u32_A* 1s70_A*
Length = 299
Score = 40.3 bits (95), Expect = 0.002
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Query: 655 PEANFIFLGDLINKGPQSLDT--LRMVYSMRNYAKIVL--GNHE 694
PE+N++FLGD +++G QSL+T L + Y ++ L GNHE
Sbjct: 82 PESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHE 125
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase,
toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN;
2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
Length = 330
Score = 40.3 bits (95), Expect = 0.002
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Query: 655 PEANFIFLGDLINKGPQSLDT--LRMVYSMRNYAKIVL--GNHE 694
PE+N++FLGD +++G QSL+T L + Y ++ L GNHE
Sbjct: 83 PESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHE 126
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 40.5 bits (95), Expect = 0.002
Identities = 48/184 (26%), Positives = 69/184 (37%), Gaps = 44/184 (23%)
Query: 18 LIGEPGVGKTAIVEGLAQRI------INGEVPNSLLSKKILLLDIALLLAGTKYRGEFED 71
L G PG GKT I +A ING ++S K GE E
Sbjct: 243 LYGPPGTGKTLIARAVANETGAFFFLINGP---EIMS---------------KLAGESES 284
Query: 72 RLKKILKEISNNQKDIIIFIDELHTM-----IGTGKVEGSIDAGNMLKPEL----SRGEL 122
L+K +E N IIFIDEL + G+VE I + L + R +
Sbjct: 285 NLRKAFEEAEKNAPA-IIFIDELDAIAPKREKTHGEVERRIVS--QLLTLMDGLKQRAHV 341
Query: 123 HCIGATTLNEYRQYIEKDAAFER--RF-QKILVEEPDIEETISILRGLQKKYEVHHGVEI 179
+ AT D A R RF +++ + PD + IL+ K ++ V++
Sbjct: 342 IVMAATNRPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL 396
Query: 180 TDPA 183
A
Sbjct: 397 EQVA 400
Score = 29.0 bits (65), Expect = 8.8
Identities = 37/213 (17%), Positives = 71/213 (33%), Gaps = 44/213 (20%)
Query: 335 IQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQD 394
+ A +F +++T IV+ T I ++ ++ + + G
Sbjct: 154 VHGGMRAVEFKVVETDPSP---YCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCR 210
Query: 395 EAISAVSNAIRR--------SRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNE 446
+ ++ + + G+ K P G + GP G GKT + + ++
Sbjct: 211 KQLAQIKEMVELPLRHPALFKAIGV---KPPRG-ILLYGPPGTGKTLIARAVAN---ETG 263
Query: 447 ESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGG--YLTEIVRRKPYSLILLDEI----- 499
I+ E + K G E E + ++I +DE+
Sbjct: 264 AFFFLINGPEIMSK------------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAP 311
Query: 500 --EKANSDVFN-ILLQILD--DGRLTDNRGRTI 527
EK + +V I+ Q+L DG R I
Sbjct: 312 KREKTHGEVERRIVSQLLTLMDG--LKQRAHVI 342
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase
domains, sensor 1, sensor 2, transferase; HET: DNA;
2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Length = 250
Score = 39.5 bits (93), Expect = 0.002
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 390 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACI 442
VVGQ+ ++A++N + R + A ++F G GVGKT + + L+ +
Sbjct: 25 VVGQEHVLTALANGLSLGR--IHHA------YLFSGTRGVGKTSIARLLAKGL 69
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo
sapiens} PDB: 2qa7_A
Length = 120
Score = 37.8 bits (87), Expect = 0.003
Identities = 18/113 (15%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Query: 220 DSKPEIMDKLERRLIQLKIEHEAIKREYD---ESSKKRLLLIKKEINKLEIKYANLEKIW 276
D K ++++L R + LK + E +K E K + ++ ++ + +
Sbjct: 11 DEKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDC 70
Query: 277 KYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKE 329
++ + + + ++ +E+ EK + +++ RK+ ++ +Y +L + L +
Sbjct: 71 EFLRAELDELRRQREDTEKAQRSLSEIERKA---QANEQRYSKLKEKYSELVQ 120
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone,
hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Length = 310
Score = 39.9 bits (94), Expect = 0.003
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 29/126 (23%)
Query: 390 VVGQDEAISAVSNAIR-RSRSGLSDAK-----RPYGSFMFLGPTGVGKTELCKTLSACIF 443
++GQ +A AV+ A+R R R P M GPTGVGKTE+ + L+
Sbjct: 17 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMI-GPTGVGKTEIARRLAKLA- 74
Query: 444 NNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSL--------IL 495
I+++ ++F E GY+G E + ++ ++ +
Sbjct: 75 --NAPFIKVEATKFTEV-----------GYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVF 121
Query: 496 LDEIEK 501
+DEI+K
Sbjct: 122 IDEIDK 127
Score = 31.1 bits (71), Expect = 1.6
Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 20/88 (22%)
Query: 14 SNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRL 73
N ++IG GVGKT I LA + + + ++
Sbjct: 51 KNILMIGPTGVGKTEIARRLA-----KLANAPFIKVEATKFTEVGYVG--------KEVD 97
Query: 74 KKILKEISNNQKDI-------IIFIDEL 94
I + I I+FIDE+
Sbjct: 98 SIIRDLTDSAGGAIDAVEQNGIVFIDEI 125
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein,
structural genomics, PSI-2, protein structu initiative;
2.30A {Saccharomyces cerevisiae}
Length = 335
Score = 39.2 bits (92), Expect = 0.004
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 635 DVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDT--LRMVYSMRNYAKIVL-- 690
D HG + L +K K P+ ++F GD +++G S + L + + L
Sbjct: 71 DTHGQFYDVLNLFRKFGKVGPKHTYLFNGDFVDRGSWSCEVALLFYCLKILHPNNFFLNR 130
Query: 691 GNHE 694
GNHE
Sbjct: 131 GNHE 134
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 39.7 bits (93), Expect = 0.005
Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 4/114 (3%)
Query: 224 EIMDKLERRLIQLK---IEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEK 280
++ LE +++QL+ E + E + E KL L + K
Sbjct: 921 KLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAK 980
Query: 281 TLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKY-GELNKLERILKEKSQK 333
++EEI K+R ++++ + KY E +L LKE++
Sbjct: 981 NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTL 1034
Score = 37.4 bits (87), Expect = 0.025
Identities = 16/103 (15%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Query: 202 DKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESS---KKRLLLI 258
++ ++ EI + + + + ++ + K E ++ K++ L+
Sbjct: 976 EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLL 1035
Query: 259 KKEINKLEIKYANLEKIWK--YEKTLIKDSQQIKEEIEKVRLK 299
K E +L + + K EK L+++++Q++ ++ RL+
Sbjct: 1036 KTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLR 1078
Score = 34.3 bits (79), Expect = 0.20
Identities = 35/198 (17%), Positives = 71/198 (35%), Gaps = 22/198 (11%)
Query: 222 KPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKT 281
K I+ K R + H +K R ++ K+E+ KL+I+ ++E+ K
Sbjct: 866 KSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIG 925
Query: 282 L---IKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLP 338
L I Q+ +E K + + + + E KL ++ + +
Sbjct: 926 LENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYST-----ETEKLRSDVERLRMSEEEAK 980
Query: 339 NNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAIS 398
N N+ L+ EEIA+ + K + + + IE K ++ +S
Sbjct: 981 NATNRVLSLQ-----EEIAK---------LRKELHQTQTEKKTIEEWADKYKHETEQLVS 1026
Query: 399 AVSNAIRRSRSGLSDAKR 416
+ ++ + R
Sbjct: 1027 ELKEQNTLLKTEKEELNR 1044
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 38.6 bits (89), Expect = 0.006
Identities = 27/163 (16%), Positives = 52/163 (31%), Gaps = 13/163 (7%)
Query: 15 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLK 74
+ G PG GKT + +A L + + + G++
Sbjct: 69 HMSFTGNPGTGKTTVALKMAG---------LLHRLGYVRKGHLVSVTRDDLVGQYIGHTA 119
Query: 75 KILKEISNNQKDIIIFIDELHTMI-GTGKVEGSIDAGNMLKPELS--RGELHCIGATTLN 131
KE+ ++FIDE + + + + +A +L + R +L I A +
Sbjct: 120 PKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYAD 179
Query: 132 EYRQYIEKDAAFERRF-QKILVEEPDIEETISILRGLQKKYEV 173
+ + + F R I + EE I +
Sbjct: 180 RMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNY 222
Score = 32.8 bits (74), Expect = 0.43
Identities = 22/160 (13%), Positives = 52/160 (32%), Gaps = 19/160 (11%)
Query: 373 QVEREKLLNIENLLCKRVVGQDEA-------ISAVSNAIRRSRSGLSDAKRPYGSFMFLG 425
+ E + L + ++G + + R + GL+ F G
Sbjct: 16 EYEGSGAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTL-HMSFTG 74
Query: 426 PTGVGKTELCKTLSACIFNN----EESIIRIDMSEFI-------EKHSISRLIGAPPGYI 474
G GKT + ++ + + ++ + + + + L A G +
Sbjct: 75 NPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAMGGVL 134
Query: 475 GYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQIL 514
+E YL + Y ++ + + + + L+ IL
Sbjct: 135 FIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVIL 174
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent
proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A*
1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E*
1ht1_E* 1ht2_E*
Length = 444
Score = 38.5 bits (90), Expect = 0.009
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
Query: 390 VVGQDEAISAVSNAIR-R-SRSGLSDAKR----PYGSFMFLGPTGVGKTE 433
++GQ +A AV+ A+R R R L + R P M +GPTGVGKTE
Sbjct: 17 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILM-IGPTGVGKTE 65
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform;
protein-peptide docking, protein targeting, AKA
beta-augmentation, calmodulin-binding, membrane,
hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A*
1tco_A* 1mf8_A* 2jog_A
Length = 357
Score = 38.4 bits (90), Expect = 0.009
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 635 DVHGCKKSLSILLK--KIHKKSPEANFIFLGDLINKGPQSLDT--LRMVYSMRNYAKIVL 690
D+HG L+K ++ ++FLGD +++G S++ + + L
Sbjct: 77 DIHG---QFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFL 133
Query: 691 --GNHE 694
GNHE
Sbjct: 134 LRGNHE 139
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp,
clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A
{Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B*
3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Length = 373
Score = 37.6 bits (88), Expect = 0.014
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Query: 390 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI 449
VVGQ+ ++A++N + R + A ++F G GVGKT + + L+ + N E I
Sbjct: 18 VVGQEHVLTALANGLSLGR--IHHA------YLFSGTRGVGKTSIARLLAKGL-NCETGI 68
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 36.7 bits (84), Expect = 0.015
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 15/69 (21%)
Query: 235 QLKIEHEAIK----------REYDESSKKRLLLIKKEINK-LEIKYANLEKIWKYEKTLI 283
+L E E+I+ +E D +SK +++ K LE + + EK
Sbjct: 79 RLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE--QVEKN-- 134
Query: 284 KDSQQIKEE 292
K + +I ++
Sbjct: 135 KINNRIADK 143
Score = 30.5 bits (68), Expect = 1.7
Identities = 10/58 (17%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 202 DKAIDLIDEAAAKIKIEI--DSKPEIMD-------KLERRLIQLKIEHEAIKREYDES 250
K + +D A+ ++ E +K ++ + ++E+ I +I +A ++ D
Sbjct: 95 RKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 152
Score = 29.4 bits (65), Expect = 4.0
Identities = 16/101 (15%), Positives = 30/101 (29%), Gaps = 38/101 (37%)
Query: 64 KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELH 123
K+R E RL++ L S + E ++ +L
Sbjct: 89 KWREEQRKRLQE-LDAASKVMEQEWR--------------------------EKAKKDLE 121
Query: 124 CIGATTLNEYRQY---IEKDAAFERRFQKILVEEPDIEETI 161
++ +EK+ R K ++PD + I
Sbjct: 122 -------EWNQRQSEQVEKNKINNRIADKAFYQQPD-ADII 154
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.018
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 13/39 (33%)
Query: 259 KKEINKLEIKYANLEKIWKYEKTLIKDSQ---QIKEEIE 294
K+ + KL+ A+L K+ Y DS IK +E
Sbjct: 19 KQALKKLQ---ASL-KL--YA----DDSAPALAIKATME 47
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase,
immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Length = 521
Score = 37.5 bits (87), Expect = 0.019
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 635 DVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMR-NY-AKIVL-- 690
D+HG L L + + ++FLGD +++G S++ + +++++ Y + L
Sbjct: 90 DIHGQFFDLMKLFE-VGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLR 148
Query: 691 GNHE 694
GNHE
Sbjct: 149 GNHE 152
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 35.9 bits (83), Expect = 0.046
Identities = 29/156 (18%), Positives = 57/156 (36%), Gaps = 32/156 (20%)
Query: 412 SDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPP 471
+ + P S + GP GKT L ++ + I+I + +
Sbjct: 58 NSDRTPLVSVLLEGPPHSGKTALAAKIAE---ESNFPFIKICSPDKMI------------ 102
Query: 472 GYIGYEEGGYLTEI---VRRKPYSLILLDEIEK------ANSDVFNILLQILDDGRLTDN 522
G+ + + +I + S +++D+IE+ N++LQ L L
Sbjct: 103 GFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQAL----LVLL 158
Query: 523 RGRTINFRNTIIVMTSNLGSDKIKEMEKG---DKEI 555
+ R +I+ T++ D ++EME I
Sbjct: 159 KKAPPQGRKLLIIGTTSR-KDVLQEMEMLNAFSTTI 193
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 354
Score = 35.2 bits (81), Expect = 0.073
Identities = 20/152 (13%), Positives = 44/152 (28%), Gaps = 34/152 (22%)
Query: 390 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI 449
+ +E + + + + R + GP G GK C L IF
Sbjct: 16 LSHNEELTNFLKSLSDQPRD--------LPHLLLYGPNGTGKKTRCMALLESIFGPGVYR 67
Query: 450 IRIDMSEFIEKHSISRLIGAPPGYIGYE-----EGGYLTEIVRRK--------------- 489
++ID+ +F+ + + E G +++
Sbjct: 68 LKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDS 127
Query: 490 ------PYSLILLDEIEKANSDVFNILLQILD 515
Y ++++E D L + ++
Sbjct: 128 KDGLAHRYKCVIINEANSLTKDAQAALRRTME 159
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 35.1 bits (80), Expect = 0.074
Identities = 27/160 (16%), Positives = 51/160 (31%), Gaps = 15/160 (9%)
Query: 17 VLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKI 76
L+ G GK+ + LA +I G LL L + L RL +
Sbjct: 34 ALVSPGGAGKSMLALQLAAQIAGGP---DLLEVGELPTGPVIYLPAEDPPTAIHHRLHAL 90
Query: 77 LKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQY 136
+S ++ + + +IG+ + + + LK + TL +
Sbjct: 91 GAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAE--GRRLMVLDTLRRFHIE 148
Query: 137 IEKDAAFERRFQKILVEEPDIEET-ISILRGLQKKYEVHH 175
E + + + +T SI+ +HH
Sbjct: 149 EENASGPMAQVIGRMEA--IAADTGCSIVF-------LHH 179
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown
function, NPPSFA, national PROJ protein structural and
functional analyses; 1.60A {Aquifex aeolicus} SCOP:
d.159.1.6
Length = 260
Score = 34.7 bits (79), Expect = 0.089
Identities = 11/67 (16%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 635 DVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHE 694
+ L L I +K P+ + +G+++ + R + R + V+ +E
Sbjct: 13 NFKERFDLLPKLKGVIAEKQPDI-LVVVGNILKNEALEKEYERAHLARREPNRKVIHENE 71
Query: 695 IHLLDVL 701
++++ L
Sbjct: 72 HYIIETL 78
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 35.1 bits (80), Expect = 0.093
Identities = 56/347 (16%), Positives = 115/347 (33%), Gaps = 40/347 (11%)
Query: 14 SNPVLIGEPGVGKTAIVEGLAQRI-----------------INGEVPNSLLSKKILLLDI 56
+ + +G G GKT + + + I +N + L
Sbjct: 46 FSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAG 105
Query: 57 ALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPE 116
L G +K + N II++DE+ T++ G+++ +
Sbjct: 106 KLTGFSVPKHGINLGEYIDKIKNGTRN-IRAIIYLDEVDTLVKR-------RGGDIVLYQ 157
Query: 117 LSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEP-DIEETISILRGLQKKYEV 173
L R + I + R Y+ + ++ +P D E+ IL +
Sbjct: 158 LLRSDANISVIMISNDINVRDYM--EPRVLSSLGPSVIFKPYDAEQLKFILS--KYAEYG 213
Query: 174 HHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERRL 233
D + + +S + D KA++L+ AA + E +DK
Sbjct: 214 LIKGTYDDEILSYIAAISAKEHGD---ARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDY 270
Query: 234 IQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEI 293
Q ++ + R L+ +++ Y +L +K + + I E+
Sbjct: 271 EQERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRFSDIISEL 330
Query: 294 EK---VRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQL 337
+ V+++I R + + L + K+ R L E + I +
Sbjct: 331 DMFGIVKIRIINRGRAGGVKKYA-LVE-DKEKVLRALNETFEDSISI 375
Score = 31.7 bits (71), Expect = 1.3
Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 21/129 (16%)
Query: 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKT----ELCKTLSACIF 443
K + +++ + + AIR + S +FLG TG GKT + +
Sbjct: 20 KEIPFREDILRDAAIAIRYFVKN----EVK-FSNLFLGLTGTGKTFVSKYIFNEIEEVKK 74
Query: 444 NNEES----IIRIDMSEF--IEKHSISRLIGAPPGYIGYEEGGYLTEIVRR------KPY 491
+EE ++ E + +S L G G+ + G L E + +
Sbjct: 75 EDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR 134
Query: 492 SLILLDEIE 500
++I LDE++
Sbjct: 135 AIIYLDEVD 143
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 33.6 bits (76), Expect = 0.17
Identities = 15/100 (15%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 209 DEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIK 268
+ + ++ ++ I ++L + + +L+ ++ ++R + L ++ +N+ +
Sbjct: 87 YKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMS-LEDFEQRLNQAIER 145
Query: 269 YANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSD 308
A LE +++L+ Q++K+E +R ++ R+ +
Sbjct: 146 NAFLESELDEKESLLVSVQRLKDEARDLRQELAVRERQQE 185
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+
molecular machine, hexamer, asymmetric,, ATP-BIN
chaperone, metal-binding; HET: ADP; 3.25A {Escherichia
coli} PDB: 3hte_A
Length = 363
Score = 33.7 bits (78), Expect = 0.28
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 12/66 (18%)
Query: 382 IENLLCKRVVGQDEA---IS-AVSNAIRRSRSGLSD-----AKRPYGSFMFLGPTGVGKT 432
I N L V+GQ++A ++ AV N +R R+G + K + + +GPTG GKT
Sbjct: 9 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGK---SNILLIGPTGSGKT 65
Query: 433 ELCKTL 438
L +TL
Sbjct: 66 LLAETL 71
>2r44_A Uncharacterized protein; putative ATPase, structural genomics,
joint center for struc genomics, JCSG; HET: MSE PG4;
2.00A {Cytophaga hutchinsonii atcc 33406}
Length = 331
Score = 33.3 bits (77), Expect = 0.32
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 11/71 (15%)
Query: 372 VQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGK 431
R K+ + + + K VVGQ I+ + I + G + G G+ K
Sbjct: 11 SLYYRNKIKEVIDEVGKVVVGQKYMINRLLIGI------CTG-----GHILLEGVPGLAK 59
Query: 432 TELCKTLSACI 442
T TL+ +
Sbjct: 60 TLSVNTLAKTM 70
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 33.3 bits (76), Expect = 0.45
Identities = 21/128 (16%), Positives = 47/128 (36%), Gaps = 6/128 (4%)
Query: 210 EAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKY 269
+ K + E++ ++ L + E +A E K+ ++ + +LE +
Sbjct: 1049 KKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDET 1108
Query: 270 ANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKE 329
+ K + L ++E++E + NKA ++ L EL L+ L++
Sbjct: 1109 SQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQ-----KRDLS-EELEALKTELED 1162
Query: 330 KSQKDIQL 337
Sbjct: 1163 TLDTTATQ 1170
Score = 32.9 bits (75), Expect = 0.54
Identities = 23/131 (17%), Positives = 54/131 (41%), Gaps = 14/131 (10%)
Query: 210 EAAAKIKIEIDSKPEIMDKLERRLIQL---KIEHEAIKREYD---ESSKKRLLLIKKEIN 263
E ++ ++ ++ E+ + E ++L K E E I E + E ++R ++ E
Sbjct: 892 EEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKK 951
Query: 264 KLEIKYANLEKIWK-YEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNK 322
K++ + +LE+ + E K + K++ + D + +L K
Sbjct: 952 KMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMED-------QNNKLTK 1004
Query: 323 LERILKEKSQK 333
++L+E+
Sbjct: 1005 ERKLLEERVSD 1015
Score = 32.1 bits (73), Expect = 0.97
Identities = 29/154 (18%), Positives = 68/154 (44%), Gaps = 17/154 (11%)
Query: 206 DLIDEAAAKIKIE---IDSKPEIMDKLERRLIQLK--IEHEAIKREYDESSKKRLLLIKK 260
+++ E A+I+ E K++++++ L+ +E E R+ + K
Sbjct: 927 EILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTA---DG 983
Query: 261 EINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGEL 320
+I K+E +E + K L K+ + ++E + + + + K+ + ++KLK
Sbjct: 984 KIKKMEDDILIMED--QNNK-LTKERKLLEERVSDLTTNLAEEEEKA--KNLTKLK---- 1034
Query: 321 NKLERILKEKSQKDIQLPNNANKFTLLKTKVGSE 354
NK E ++ E + + + + +K K+ E
Sbjct: 1035 NKHESMISELEVRLKKEEKSRQELEKIKRKLEGE 1068
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 32.0 bits (72), Expect = 0.50
Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 17 VLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEF------- 69
V+ G PGVG T + + V ++S ++ ++A R +
Sbjct: 7 VVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPET 66
Query: 70 -EDRLKKILKEISNNQKDIIIFIDELHTMIGT 100
+ K ++I+ K+ + +D H+ + T
Sbjct: 67 QKRIQKMAGRKIAEMAKESPVAVD-THSTVST 97
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 32.3 bits (73), Expect = 0.68
Identities = 33/211 (15%), Positives = 76/211 (36%), Gaps = 36/211 (17%)
Query: 388 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE 447
+ +++ I +++ + ++P + G TG GKT + K + + +
Sbjct: 20 DELPHREDQIRKIASILAPLYRE----EKP-NNIFIYGLTGTGKTAVVKFVLSKLHKKFL 74
Query: 448 S---IIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIV--------RRKPYSLILL 496
+ I+ + + + + G + E+ +I+L
Sbjct: 75 GKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVL 134
Query: 497 DEIE----KANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGD 552
DEI+ K N D+ L +I + +N + +N +K ++ D
Sbjct: 135 DEIDAFVKKYNDDILYKLSRINSE----------VNKSKISFIGITN----DVKFVDLLD 180
Query: 553 KEIIKLAVMNEVKIYFRPEFINRIDDIIVFR 583
+ + ++E +I F P ++DI+ R
Sbjct: 181 PRV--KSSLSEEEIIFPPYNAEELEDILTKR 209
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding
loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori}
SCOP: c.37.1.20
Length = 376
Score = 32.2 bits (74), Expect = 0.73
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 21/78 (26%)
Query: 382 IENLLCKRVVGQDEA---IS-AVSNAIRRSRSGLSDAKRPYGSF---------------- 421
++ +L V+GQ++A S AV N +R K+
Sbjct: 15 LKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSN 74
Query: 422 -MFLGPTGVGKTELCKTL 438
+ +GPTG GKT + +TL
Sbjct: 75 ILLIGPTGSGKTLMAQTL 92
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 32.2 bits (72), Expect = 0.79
Identities = 47/334 (14%), Positives = 105/334 (31%), Gaps = 28/334 (8%)
Query: 6 TKEN--FYFTSNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGT 63
K+N Y P L +GK +V+ + + L K ++ +++ +
Sbjct: 318 KKDNDFIYHDRVPDLKDLDPIGKATLVKSTPVNVPISQKFTDLFEK---MVPVSVQQSLA 374
Query: 64 KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELH 123
Y D + + + ++ + L+ V G + + +
Sbjct: 375 AYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSG-----DTVPQSILTKSRS 429
Query: 124 CIGATTLNEYRQYIEKDAAFERRFQKILVE-EPDIEETISILRGLQKKYEVHHGVEITDP 182
I + Q I++ +R ++IL E ++E + L+ K++ P
Sbjct: 430 VIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKE---RWQRTP 486
Query: 183 AIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEA 242
+ L + R + DKA+ + + ++ K E L
Sbjct: 487 SNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQ-SHRDTIVLLCKPEPELNAAIPSANP 545
Query: 243 IKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINK 302
K L + +++++ + LE +K + K
Sbjct: 546 AKTMQGSEVVNVLKSLLSNLDEVKKEREGLE-------------NDLKSVNFDMTSKFLT 592
Query: 303 ATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQ 336
A + L EL+++ L K Q+ ++
Sbjct: 593 ALAQDGVINEEALSVTELDRVYGGLTTKVQESLK 626
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 31.9 bits (72), Expect = 0.91
Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 21/137 (15%)
Query: 392 GQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIR 451
GQ A + V AI+ + GP G G T L K + + + E+ I
Sbjct: 29 GQKNAFNIVMKAIKEKKHH----------VTINGPAGTGATTLTKFIIEALISTGETGII 78
Query: 452 ID---------MSEFIEKHS--ISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIE 500
+ +S+ K + I ++ P E+ +++ DE+
Sbjct: 79 LAAPTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVS 138
Query: 501 KANSDVFNILLQILDDG 517
+ +F ILL +
Sbjct: 139 MYDRKLFKILLSTIPPW 155
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 32.0 bits (73), Expect = 1.0
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 10/67 (14%)
Query: 635 DVHGCKKSLSILLK--KIHKKSPEAN-FIFLGDLINKGPQSLDT--LRMVYSMRNYAKIV 689
D HG LL +++ E N +IF GD +++G S++ + +
Sbjct: 220 DTHG---QFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFH 276
Query: 690 L--GNHE 694
L GNHE
Sbjct: 277 LLRGNHE 283
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 31.3 bits (71), Expect = 1.3
Identities = 45/276 (16%), Positives = 80/276 (28%), Gaps = 77/276 (27%)
Query: 18 LIGEPGVGKTAIVEGLAQ-------RIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFE 70
+ G G GK+ E + + + GE L S GE
Sbjct: 41 IWGGKGQGKSFQCELVFRKMGINPIMMSAGE----LESG---------------NAGEPA 81
Query: 71 DRLKKILKEISNNQKDI---IIFIDELHTMIGTGKVEGSIDAGN--------MLKPELSR 119
+++ +E + + +FI++L G N + +
Sbjct: 82 KLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTN 141
Query: 120 GELHC------------IGAT----TLNEYRQYIEKDAAFER--RFQKILVEEPDIEETI 161
+L I TL A R R +K P E+ I
Sbjct: 142 VQLPGMYNKQENARVPIIVTGNDFSTL---------YAPLIRDGRMEK-FYWAPTREDRI 191
Query: 162 SILRGLQKKYEV--HHGVEITD-------PAIVAASELSYRYISDRFMPDKAIDLIDEAA 212
+ G+ + V V+I D A Y +++ I+ I +
Sbjct: 192 GVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKL 251
Query: 213 AKIKIEIDS--KPEI-MDKLERRLIQLKIEHEAIKR 245
+ +P++ ++KL L E E +KR
Sbjct: 252 LNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKR 287
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 31.6 bits (72), Expect = 1.3
Identities = 20/155 (12%), Positives = 56/155 (36%), Gaps = 11/155 (7%)
Query: 154 EPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAA 213
EP + E + ++ ++K++ V PA V + S + D I
Sbjct: 59 EPAVIEAQNAVKSIKKQHLVEVRSMANPPAAVKLALESIALLLGESTTD--WKQIRSIIM 116
Query: 214 KIKIEIDSK--------PEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKL 265
+ I +K+++ + + I ++ + ++N
Sbjct: 117 RENFIPTIVNFSAEEISDAIREKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYA 176
Query: 266 EIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKI 300
++ +E + + L D++ ++++E + L++
Sbjct: 177 DML-KRVEPLRNELQKLEDDAKDNQQKLEALLLQV 210
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors,
drug design, cytoplasm, hydrolase, iron, manganese,
metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens}
PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A*
3h68_A* 3h69_A* 1s95_A
Length = 315
Score = 31.4 bits (72), Expect = 1.3
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 10/67 (14%)
Query: 635 DVHGCKKSLSILLK--KIHKKSPEAN-FIFLGDLINKGPQSLDT--LRMVYSMRNYAKIV 689
D HG LL +++ E N +IF GD +++G S++ + +
Sbjct: 67 DTHG---QFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFH 123
Query: 690 L--GNHE 694
L GNHE
Sbjct: 124 LLRGNHE 130
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA;
2.80A {Staphylococcus aureus}
Length = 514
Score = 31.3 bits (72), Expect = 1.4
Identities = 17/97 (17%), Positives = 43/97 (44%), Gaps = 28/97 (28%)
Query: 203 KAIDLIDEAAAKIKI---EIDSKPEIMDK-----------LERRLIQL-KIEHEAIKREY 247
KA+ ++D+ I+ + D+K +++ + +L +L + A++ E+
Sbjct: 404 KALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAEAIVMLQLYRLTNTDIVALEGEH 463
Query: 248 DE-------------SSKKRLLLIKKEINKLEIKYAN 271
E + L +IK+E+N+++ K+ +
Sbjct: 464 KELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKS 500
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 31.1 bits (71), Expect = 1.5
Identities = 42/174 (24%), Positives = 63/174 (36%), Gaps = 57/174 (32%)
Query: 18 LIGEPGVGKTAIVEGLAQRI------INGEVPNSLLSKKILLLDIALLLAGTKYRGEFED 71
L G PG GKT + + +A + G + L+ K+ GE
Sbjct: 56 LYGPPGTGKTLLAKAVATETNATFIRVVG---SELVK---------------KFIGEGAS 97
Query: 72 RLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGN-----MLKPEL--------S 118
+K I K IIFIDE+ I + + ++ +L +
Sbjct: 98 LVKDIFKLAKEKAPS-IIFIDEIDA-IAAKRTDALTGGDREVQRTLM--QLLAEMDGFDA 153
Query: 119 RGELHCIGAT----TLNEYRQYIEKDAAFER--RF-QKILVEEPDIEETISILR 165
RG++ IGAT L D A R RF + I V PD + + IL+
Sbjct: 154 RGDVKIIGATNRPDIL---------DPAILRPGRFDRIIEVPAPDEKGRLEILK 198
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 30.7 bits (69), Expect = 1.5
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 17 VLIGEPGVGKTAIVEGLAQRIINGEV 42
+ G GVGKT L +R+ V
Sbjct: 9 WINGPFGVGKTHTAHTLHERLPGSFV 34
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase,
PSI, protein structure initiative, midwest center for
structural genomics, MCSG; 2.25A {Escherichia coli}
SCOP: d.159.1.7
Length = 208
Score = 30.5 bits (69), Expect = 1.8
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 9/67 (13%)
Query: 635 DVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSL--------DTLRMVYSMRNYA 686
D+HG + +L+ + + + LGD++N GP++ + + + +
Sbjct: 33 DIHGSLPATERVLELFAQSGAQW-LVILGDVLNHGPRNALPEGYAPAKVVERLNEVAHKV 91
Query: 687 KIVLGNH 693
V GN
Sbjct: 92 IAVRGNC 98
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV,
GRAM-positive bacteria, quinolone target, DNA binding,
DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae}
PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A*
3rad_A* 3rae_A* 3raf_A*
Length = 496
Score = 30.9 bits (71), Expect = 2.3
Identities = 17/97 (17%), Positives = 37/97 (38%), Gaps = 28/97 (28%)
Query: 203 KAIDLIDEAAAKI---KIEIDSKPEIMDK-----------LERRLIQL-KIEHEAIKREY 247
+ I ++DE A I + + D+K + + +L +L + ++ E
Sbjct: 380 RVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEE 439
Query: 248 DE-------------SSKKRLLLIKKEINKLEIKYAN 271
E + L+KKE+ +++ K+A
Sbjct: 440 AELREKIAMLAAIIGDERTMYNLMKKELREVKKKFAT 476
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D
3j0j_D*
Length = 464
Score = 30.4 bits (69), Expect = 2.8
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 131 NEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGL 167
R+Y++ AFER F + IEE++ I L
Sbjct: 406 ENDRRYLQFADAFERFFINQGQQNRSIEESLQIAWAL 442
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 30.6 bits (69), Expect = 2.9
Identities = 10/95 (10%), Positives = 31/95 (32%), Gaps = 17/95 (17%)
Query: 17 VLIGEPGVGKTAIVEGLAQ--RIINGEVPNSLLSKKI----------LLLDIALLLAGTK 64
+ G G GK+ + + ++ G + I L ++ + L +
Sbjct: 151 TIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEE 210
Query: 65 YRGE-----FEDRLKKILKEISNNQKDIIIFIDEL 94
+ E+ ++ + ++ +D++
Sbjct: 211 SFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDV 245
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like
domain, protein binding; 1.31A {Homo sapiens} SCOP:
c.37.1.1
Length = 180
Score = 29.8 bits (68), Expect = 2.9
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 412 SDAKRPYGSFMFLGPTGVGKTELCKTL 438
S ++ + LG GVG+ + TL
Sbjct: 2 SHMRKT---LVLLGAHGVGRRHIKNTL 25
>2xxp_A CPS2A; replication, peptidoglycan, LCP, LYTR; HET: DSL PEG; 1.69A
{Streptococcus pneumoniae} PDB: 3tep_A* 3tfl_A* 2xxq_A*
3tel_A* 4de8_A*
Length = 398
Score = 30.2 bits (68), Expect = 3.1
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 497 DEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 546
+ + + + FNI + +D + R+ + I+MT N + KI
Sbjct: 120 EAPKTSKNQSFNIYVSGIDTYGPISSVSRS----DVNILMTVNRDTKKIL 165
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 30.6 bits (69), Expect = 3.1
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 420 SFMFLGPTGVGKTELCKTLSAC 441
+ + +G G GKT KT+
Sbjct: 925 ALILVGKAGCGKTATWKTVIDA 946
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 30.3 bits (67), Expect = 3.2
Identities = 40/276 (14%), Positives = 80/276 (28%), Gaps = 45/276 (16%)
Query: 14 SNPVLIGEPGVGKTAIV----EGLAQRIINGEVPN---------SLLSKKILLLDIALLL 60
+ K +V + L E+P L L I +
Sbjct: 46 KLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAI 105
Query: 61 AGTKYRGE--FEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS 118
+ G+ E I ++ +I I ++ ++
Sbjct: 106 SKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKW-----ISSK 160
Query: 119 RGELHCIG-ATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISI----LRGLQKKYEV 173
+L I R+ I + + F +I + + D E + L+ L K + V
Sbjct: 161 NSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHV 220
Query: 174 HHGVEITDPAIVAASELSYRYI------SDRFMPDKAIDLIDEAAAKIK----------- 216
+ E + I + + +K LI + A +
Sbjct: 221 KVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICE 280
Query: 217 --IEIDSKPEIMDKLERRLIQLKIEHEAIKREYDES 250
+EI SK + + K + +L + E + R + E+
Sbjct: 281 AAVEI-SKKDFVRKGGLQKGKLVVSQEMVPRYFSEA 315
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently
linked comple supercoiling; HET: DNA PTR TSP; 2.48A
{Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A
2rgr_A*
Length = 757
Score = 30.4 bits (68), Expect = 3.2
Identities = 18/152 (11%), Positives = 39/152 (25%), Gaps = 17/152 (11%)
Query: 149 KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLI 208
++ V I L L G +E +
Sbjct: 617 ELTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSH 676
Query: 209 DEAAAKIKIEIDSKPEIMDKLERRLIQL-KIEHEAIKREYDESSKKRLLLIKKEINKLEI 267
++ I + L R+ L K ++ + ++ E + E+ L
Sbjct: 677 EDTENVINGPEELYGTYEYLLGMRIWSLTKERYQKLLKQKQE--------KETELENLLK 728
Query: 268 KYANLEKIWKYEKTLIKDSQQIKEEIEKVRLK 299
A + IW D + + ++ +
Sbjct: 729 LSA--KDIWN------TDLKAFEVGYQEFLQR 752
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 29.5 bits (67), Expect = 3.3
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 2 FHNHTKENFYFTSNP---VLIGEPGVGKTAIV 30
H+ +EN YF ++G GK+A+V
Sbjct: 6 HHSSGRENLYFQGPELKVGIVGNLSSGKSALV 37
>3lpp_A Sucrase-isomaltase; glycoside hydrolase family 31,
alpha-glucosidase membrane, disease mutation, disulfide
bond, glycoprotein, glycosidase; HET: NAG BMA MAN KTL;
2.15A {Homo sapiens} PDB: 3lpo_A*
Length = 898
Score = 30.2 bits (68), Expect = 3.4
Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 20/131 (15%)
Query: 483 TEIVRRKPYSLIL-LDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLG 541
T R+ P LI+ L E A D F DDG T + + N+ +++N
Sbjct: 773 TTASRKNPLGLIVALGENNTAKGDFF------WDDG-ETKDTIQNGNYILYTFSVSNN-- 823
Query: 542 SDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRI---------DDIIVFRYLNRKNILS 592
+ I +E LA VKI + + + + F Y +L
Sbjct: 824 TLDIVCTHSSYQEGTTLAF-QTVKILGLTDSVTEVRVAENNQPMNAHSNFTYDASNQVLL 882
Query: 593 IANIQLNILKN 603
IA+++LN+ +N
Sbjct: 883 IADLKLNLGRN 893
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus
musculus}
Length = 301
Score = 29.9 bits (68), Expect = 3.7
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 20/110 (18%)
Query: 88 IIFIDELHTMIGTGKVEGSIDAG-------NMLKPEL----SRGELHCIGATTLNEYRQY 136
++F DEL + I + D G N + E+ ++ + IGAT N R
Sbjct: 111 VLFFDELDS-IAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGAT--N--RPD 165
Query: 137 IEKDAAFER--RFQKIL-VEEPDIEETISILRGLQKKYEVHHGVEITDPA 183
I D A R R +++ + PD + ++IL+ +K V V++ A
Sbjct: 166 I-IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLA 214
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 29.5 bits (67), Expect = 3.8
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 10/40 (25%)
Query: 1 MFHNHT----KENFYFTSNP------VLIGEPGVGKTAIV 30
M H+H +EN YF +L+GE GVGK+ +
Sbjct: 1 MHHHHHHSSGRENLYFQGQKDGIFKVMLVGESGVGKSTLA 40
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 29.1 bits (66), Expect = 4.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 17 VLIGEPGVGKTAIVEGLAQR 36
VL+G PG GK+ I LA+
Sbjct: 6 VLVGLPGSGKSTIGRRLAKA 25
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia
coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E*
1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Length = 334
Score = 29.7 bits (67), Expect = 4.2
Identities = 7/50 (14%), Positives = 13/50 (26%), Gaps = 8/50 (16%)
Query: 393 QDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACI 442
+ + + R A + G+G L LS +
Sbjct: 7 LRPDFEKLVASYQAGR--GHHA------LLIQALPGMGDDALIYALSRYL 48
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics,
structural genomics consortium, SGC; HET: GDP; 1.90A
{Homo sapiens} SCOP: c.37.1.8
Length = 196
Score = 29.1 bits (66), Expect = 4.5
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 15/45 (33%)
Query: 1 MFHNH--------TKENFYFTSNP-------VLIGEPGVGKTAIV 30
M H+H EN YF S + G GVGK+A+V
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMAKSAEVKLAIFGRAGVGKSALV 45
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 29.1 bits (66), Expect = 4.6
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 421 FMFLGPTGVGKTELCKTL 438
+ +G +GVG++ + L
Sbjct: 22 LVLIGASGVGRSHIKNAL 39
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 29.6 bits (66), Expect = 4.6
Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 8/114 (7%)
Query: 226 MDKLERRLIQLKIEHEAIKREYDESSKK------RLLLIKKEINKLEIKYANLEKIWKYE 279
MD +++++ LK++ E DE+ R ++ E+ L+ K E
Sbjct: 1 MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60
Query: 280 KTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQK 333
+KD+Q+ E EK + +L EL++ + L QK
Sbjct: 61 SEALKDAQEKLELAEKKATDAEA--DVASLNRRIQLFEEELDRAQERLATALQK 112
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide,
carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Length = 394
Score = 29.6 bits (67), Expect = 4.8
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 198 RFMPDKAIDLIDEAAAKIKIEIDSK-------PEIMDKLERRLIQLKIEH 240
F K + + +A AKI E+D+K PE + + + L IE
Sbjct: 219 NFRKVKRVQDVVQAFAKIVTEVDAKLLLVGDGPE-FCTILQLVKNLHIED 267
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 29.3 bits (65), Expect = 4.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 17 VLIGEPGVGKTAIVEGLAQRI 37
+L G PG GK+ I E LA
Sbjct: 13 LLSGHPGSGKSTIAEALANLP 33
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 29.1 bits (66), Expect = 4.9
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 7/36 (19%)
Query: 2 FHNH---TKENFYFTSNP----VLIGEPGVGKTAIV 30
H+H +EN YF ++G G GK+A+
Sbjct: 3 HHHHHSSGRENLYFQGPLEVNLAILGRRGAGKSALT 38
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA
topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus
aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Length = 692
Score = 30.0 bits (68), Expect = 4.9
Identities = 18/97 (18%), Positives = 38/97 (39%), Gaps = 28/97 (28%)
Query: 203 KAIDLIDEAAAKIKIEIDS---KPEIMDK-----------LERRLIQL-KIEHEAIKREY 247
A+D IDE + I+ + + L+ RL +L +E + I+ EY
Sbjct: 587 IALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEY 646
Query: 248 DE-------------SSKKRLLLIKKEINKLEIKYAN 271
+E + L L++ E+ ++ ++ +
Sbjct: 647 NELLNYISELETILADEEVLLQLVRDELTEIRDRFGD 683
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 28.9 bits (65), Expect = 5.3
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 17 VLIGEPGVGKTAIVEGLAQR 36
+L G K+ + L++
Sbjct: 5 ILEGPDCCFKSTVAAKLSKE 24
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 29.7 bits (67), Expect = 5.5
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Query: 390 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLS 439
V+GQ+ A+ + A A + + +G G GK+ L + ++
Sbjct: 43 VIGQEHAVEVIKTA----------ANQKRHVLL-IGEPGTGKSMLGQAMA 81
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia
chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 28.7 bits (65), Expect = 5.6
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 13 TSNPVLIGEPGVGKTAIVEGLAQR 36
T ++G G G T + LA+
Sbjct: 2 TEPIFMVGARGCGMTTVGRELARA 25
>4ad1_A Glycosyl hydrolase family 71; glycoside hydrolase GH99, CAZY,
enzyme-carbohydra interaction, mannose glycosidase
inhibition; 1.90A {Bacteroides xylanisolvens} PDB:
4ad2_A* 4ad3_A* 4ad4_A* 4ad5_A*
Length = 380
Score = 29.3 bits (65), Expect = 5.6
Identities = 19/129 (14%), Positives = 46/129 (35%), Gaps = 10/129 (7%)
Query: 747 GVAKQWTAQQTIKLSHQVEKILRTSYWKNLFFKLYNHNSINWDNHLHTIHLNTIDKLQFI 806
+A W +Q + ++ IL + K + + + + N + + +
Sbjct: 120 VLALTWWNEQDETEAKRIGLILDAADKKKIKVCFHLEPYPSRNVQ------NLRENIVKL 173
Query: 807 INTLTR-TRFCKIDG---TIEFIKKNIKNNNFQNNYIPWFDLPNRKTIDITVLFGHWSTL 862
I F + DG + I+ + ++ P + R T ++ G W++
Sbjct: 174 ITRYGNHPAFYRKDGKPLFFIYDSYLIEPSEWEKLLSPGGSITIRNTAYDALMIGLWTSS 233
Query: 863 GLIMKPNII 871
+ +P I+
Sbjct: 234 PTVQRPFIL 242
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic
resistance, breakage-reunion domain, struct genomics;
HET: DNA; 1.60A {Mycobacterium tuberculosis} PDB:
3ifz_A*
Length = 470
Score = 29.4 bits (67), Expect = 5.7
Identities = 13/96 (13%), Positives = 38/96 (39%), Gaps = 28/96 (29%)
Query: 203 KAIDLIDEAAAKIKIEIDS---KPEIMDK-----------LERRLIQL-KIEHEAIKREY 247
KA+D +DE A I+ + +++ L+ +L +L +E + I +
Sbjct: 366 KALDALDEVIALIRASETVDIARAGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDL 425
Query: 248 DE-------------SSKKRLLLIKKEINKLEIKYA 270
+ +++ +++ E+ ++ ++
Sbjct: 426 AKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHG 461
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 29.5 bits (66), Expect = 6.1
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 390 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSF--------MFLGPTGVGKT 432
V G ++ + N + + ++ + G M GP G+GKT
Sbjct: 41 VCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKT 91
>1p9r_A General secretion pathway protein E; bacterial type II secretion
system cytoplasmic protein - GSPE, putative ATPase/ ATP
binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11
PDB: 1p9w_A*
Length = 418
Score = 29.1 bits (66), Expect = 6.4
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 4/20 (20%)
Query: 415 KRPYGSFMFL--GPTGVGKT 432
KRP+G + L GPTG GK+
Sbjct: 164 KRPHG--IILVTGPTGSGKS 181
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 28.5 bits (63), Expect = 6.8
Identities = 26/156 (16%), Positives = 55/156 (35%), Gaps = 23/156 (14%)
Query: 425 GPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTE 484
G GVGKT L K L+ ++ + I++ + + + Y GY+E
Sbjct: 18 GTPGVGKTTLGKELA-----SKSGLKYINVGDLAREEQL---------YDGYDEEYDCPI 63
Query: 485 IVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFR---NTIIVMTSNLG 541
+ + +DE++ + I+ D R N + G
Sbjct: 64 LDEDRV-----VDELDNQMREGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRG 118
Query: 542 SDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRID 577
++ K + EI + + E ++ E ++++
Sbjct: 119 YNEKKLTDNIQCEIFQ-VLYEEATASYKEEIVHQLP 153
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 29.0 bits (64), Expect = 7.1
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 422 MFLGPTGVGKTELCKTL 438
+ +G + GKT L +TL
Sbjct: 142 VIVGGSQTGKTSLSRTL 158
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 29.5 bits (66), Expect = 7.6
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 420 SFMFLGPTGVGKTELCKTLSACIFNNEE 447
M +GP+G GKT + I +
Sbjct: 908 GVMMVGPSGGGKTTSWEVYLEAIEQVDN 935
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 28.4 bits (64), Expect = 7.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 17 VLIGEPGVGKTAIV 30
VLIGE GVGK+ +
Sbjct: 41 VLIGEQGVGKSTLA 54
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET:
ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Length = 368
Score = 29.1 bits (65), Expect = 7.7
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 390 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLS 439
+VGQ A A + R G K + + G G GKT + ++
Sbjct: 46 MVGQLAARRAAGVVLEMIREG----KIAGRAVLIAGQPGTGKTAIAMGMA 91
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 29.1 bits (65), Expect = 8.1
Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 400 VSNAIRRSRSGLSDAKRPYGS------FMFLGPTGVGKTELCKTLSACIFNNEESIIRID 453
+ R ++ A P + G TG GK+ L + L+ + ++ +D
Sbjct: 29 LKRMTREKAKQVTVAGVPMPRDAEPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD 88
Query: 454 MS-EFIEKHSISR 465
+ + + K +
Sbjct: 89 PNGDMLSKFGRDK 101
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG; 2.38A {Clostridium leptum}
Length = 403
Score = 28.8 bits (64), Expect = 8.2
Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 496 LDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 546
+D + V NI+L D+ GR+ +T+++++ + + K+K
Sbjct: 98 IDGTLIKDPMVLNIMLFGSDERPGETGYGRS----DTMMLLSIDNRNKKLK 144
>2i71_A Hypothetical protein; structural genomics, APC6294, PSI-2, protein
structure initia midwest center for structural genomics,
MCSG; 1.70A {Sulfolobus solfataricus} SCOP: e.72.1.1
Length = 400
Score = 29.0 bits (64), Expect = 8.3
Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 2/90 (2%)
Query: 444 NNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKAN 503
+ E + ++ H++ +I G + + + E K I+ +E++K
Sbjct: 277 SENEINVVYKDMKYALSHALFYVISRFSGNVDLDTLRHYAETYADKVTRAIIENEVDKIE 336
Query: 504 SDVFNILLQILDDGRLTDNRGRTINFRNTI 533
++L G G+ + R
Sbjct: 337 KYQMGSERKLL--GEYMKVEGKGFDKRILY 364
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 28.3 bits (64), Expect = 8.4
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
Query: 3 HNHTKENFYFTSNP-------VLIGEPGVGKTAIV 30
H+ +EN YF P V++G VGKT++
Sbjct: 7 HSSGRENLYFQGMPLVRYRKVVILGYRCVGKTSLA 41
>3kmi_A Putative membrane protein COG4129; structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; HET: MSE; 1.96A {Clostridium difficile}
Length = 177
Score = 28.1 bits (63), Expect = 8.8
Identities = 7/56 (12%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
Query: 64 KYRGEFEDRLKKILKEIS------NNQKDIIIFIDELHTMIGTGKVEGSIDAGNML 113
+ + + ++ + +L +I+ + + L+++I + E + N L
Sbjct: 12 EVQKKLQEEVSIVLIDIADIIVNPKKENGYSRDLYTLNSLIDSSISETYDNINNTL 67
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 28.2 bits (62), Expect = 8.9
Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 17 VLIGEPGVGKTAIVEGLAQRIINGEVPN--SLLSKKILLLDIALLLAGTKYRGEFEDRLK 74
++ G PG GKT++ E +A + + L+ + + L + EDRL
Sbjct: 14 LITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLL 73
Query: 75 KILKEISNNQKDIII 89
++ I ++ + ++
Sbjct: 74 DFMEPIMVSRGNHVV 88
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling
protein; HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 27.9 bits (63), Expect = 9.0
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 17 VLIGEPGVGKTAIV 30
+L+GE GVGK+ +
Sbjct: 6 MLVGESGVGKSTLA 19
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 28.8 bits (64), Expect = 9.3
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 12/78 (15%)
Query: 18 LIGEPGVGKTAIVEGLAQ--------RIINGEVPNSLLSKKILLLDIALLLA-GTKYRGE 68
L G PG GKTA+ +AQ + G S KK +L A G + +
Sbjct: 68 LAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKET 127
Query: 69 ---FEDRLKKILKEISNN 83
+E + ++ + N
Sbjct: 128 KEVYEGEVTELTPCETEN 145
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP;
2.37A {Humulus lupulus}
Length = 339
Score = 28.7 bits (64), Expect = 9.7
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 424 LGPTGVGKTELCKTLSACIFNNEESIIRID 453
+G TG GK+ L L A F E +I D
Sbjct: 46 MGATGTGKSRLSIDL-AAHFPLE--VINSD 72
>1w9r_A CBPA-R2, choline binding protein A; receptor, polymeric
immunoglobulin receptor, PIGR, adhesion, invasion,
pathogenesis; NMR {Streptococcus pneumoniae}
Length = 119
Score = 27.3 bits (59), Expect = 9.8
Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
Query: 223 PEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTL 282
E K+E + + + E +R Y ++ K L L E + +E+K A LE + K E
Sbjct: 10 AEAEKKVEEAKKKAEDQKEEDRRNYPTNTYKTLELEIAE-SDVEVKKAELELV-KEEAKE 67
Query: 283 IKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQK 333
++ +++K+ +V K +ATR +T K E + + +K
Sbjct: 68 PRNEEKVKQAKAEVESKKAEATRLEKIKTDRKKAEEEAKRKAAEEDKVKEK 118
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.391
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,851,346
Number of extensions: 899131
Number of successful extensions: 3427
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3305
Number of HSP's successfully gapped: 285
Length of query: 899
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 797
Effective length of database: 3,853,851
Effective search space: 3071519247
Effective search space used: 3071519247
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.5 bits)