BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2889
(163 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RNY|A Chain A, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain
pdb|3RNY|B Chain B, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain
Length = 346
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 93 IIEKSKKKATEEANIIL-YNARVEIIKQINIARENLHNEIVNLAIKSAE---KILNNKIT 148
+I+KSK+ +EE I+L Y II ++ + H +V ++ E KIL K
Sbjct: 59 VIDKSKRDPSEEIEILLRYGQHPNIITLKDVYDDGKHVYLVTELMRGGELLDKILRQKFF 118
Query: 149 IEVNSSLL 156
E +S +
Sbjct: 119 SEREASFV 126
>pdb|2WNT|A Chain A, Crystal Structure Of The Human Ribosomal Protein S6 Kinase
pdb|2WNT|B Chain B, Crystal Structure Of The Human Ribosomal Protein S6 Kinase
Length = 330
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 93 IIEKSKKKATEEANIIL-YNARVEIIKQINIARENLHNEIVNLAIKSAE---KILNNKIT 148
+I+KSK+ +EE I+L Y II ++ + H +V ++ E KIL K
Sbjct: 59 VIDKSKRDPSEEIEILLRYGQHPNIITLKDVYDDGKHVYLVTELMRGGELLDKILRQKFF 118
Query: 149 IEVNSSLL 156
E +S +
Sbjct: 119 SEREASFV 126
>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90
Ribosomal S6 Kinase 2 (rsk2)
pdb|4D9U|A Chain A, Rsk2 C-Terminal Kinase Domain, (E)-Tert-Butyl
3-(4-Amino-7-(3-
Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
pdb|4D9T|A Chain A, Rsk2 C-Terminal Kinase Domain With Inhibitor (E)-Methyl
3-(4-Amino-7-
(3-Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
Length = 342
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 93 IIEKSKKKATEEANIIL-YNARVEIIKQINIARENLHNEIVNLAIKSAE---KILNNKIT 148
II+KSK+ TEE I+L Y II ++ + + +V +K E KIL K
Sbjct: 54 IIDKSKRDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTELMKGGELLDKILRQKFF 113
Query: 149 IEVNSS 154
E +S
Sbjct: 114 SEREAS 119
>pdb|1H6K|A Chain A, Nuclear Cap Binding Complex
pdb|1H6K|B Chain B, Nuclear Cap Binding Complex
pdb|1H6K|C Chain C, Nuclear Cap Binding Complex
Length = 757
Score = 26.9 bits (58), Expect = 4.7, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 62/141 (43%), Gaps = 18/141 (12%)
Query: 27 FTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDR--------KRIQKELIATHEE 78
FT+ F+W L + K + I KEK++ +R+Q+++ + E
Sbjct: 613 FTRLFVWEILHSTIRKMNKHVLKIQKELEEAKEKLARQHDGVLEEQIERLQEKVESAQSE 672
Query: 79 NKNRINLTEKQCKLIIEKSKKKATEEANIIL---YNARVEIIKQINIARENLHNEIVNLA 135
KN + ++ +I+ + + + +L Y +E ++QI + H++I+
Sbjct: 673 QKNLFLVIFQRFIMILTEHLVRCETDGTSVLTPWYKNCIERLQQIFLQ----HHQIIQQY 728
Query: 136 IKSAEKILNNKITIEVNSSLL 156
+ + E +L T E++ +L
Sbjct: 729 MVTLENLL---FTAELDPHIL 746
>pdb|3NAW|A Chain A, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NAW|B Chain B, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|A Chain A, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|B Chain B, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|C Chain C, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|D Chain D, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
Length = 613
Score = 26.6 bits (57), Expect = 6.9, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 36 LIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELI 73
++ LD+ K IL N+ +K ++D+ R +ELI
Sbjct: 181 ILSVLDNYTKSNKSILLTMNTSDDKYNHDKVRAAEELI 218
>pdb|3SQV|A Chain A, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|B Chain B, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
Length = 616
Score = 26.6 bits (57), Expect = 7.0, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 36 LIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELI 73
++ LD+ K IL N+ +K ++D+ R +ELI
Sbjct: 184 ILSVLDNYTKSNKSILLTMNTSDDKYNHDKVRAAEELI 221
>pdb|2JS9|A Chain A, Structure Of Caenopore-5 (81 Pro Cis Conformer)
pdb|2JSA|A Chain A, Solution Structure Of Caenopore-5 (81 Pro Trans Confomer)
Length = 99
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 78 ENKNRINLTEKQCKLIIEKSKKKATEEANII 108
E + R L+ + C+L+++K + A ++AN+I
Sbjct: 15 EGRGRSALSCQMCELVVKKYEGSADKDANVI 45
>pdb|2QR7|A Chain A, 2.0a X-Ray Structure Of C-Terminal Kinase Domain Of P90
Ribosomal S6 Kinase 2: Se-Met Derivative
Length = 342
Score = 26.2 bits (56), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 93 IIEKSKKKATEEANIIL-YNARVEIIKQINIARENLHNEIVNLAIKSAE---KILNNKIT 148
II+KSK+ TEE I+L Y II ++ + + +V K E KIL K
Sbjct: 54 IIDKSKRDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTELXKGGELLDKILRQKFF 113
Query: 149 IEVNSS 154
E +S
Sbjct: 114 SEREAS 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,848,275
Number of Sequences: 62578
Number of extensions: 129280
Number of successful extensions: 568
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 551
Number of HSP's gapped (non-prelim): 49
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)