Query psy2889
Match_columns 163
No_of_seqs 204 out of 1026
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 20:10:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2889.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2889hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13460 F0F1 ATP synthase sub 100.0 2.2E-38 4.8E-43 238.2 25.0 159 5-163 9-168 (173)
2 PRK14473 F0F1 ATP synthase sub 100.0 2.8E-37 6E-42 230.5 24.8 157 7-163 3-160 (164)
3 PRK14471 F0F1 ATP synthase sub 100.0 3.6E-37 7.9E-42 229.8 24.6 159 5-163 1-161 (164)
4 PRK13461 F0F1 ATP synthase sub 100.0 7.4E-37 1.6E-41 227.1 24.7 155 9-163 2-157 (159)
5 PRK14472 F0F1 ATP synthase sub 100.0 1.3E-36 2.8E-41 229.1 24.7 158 6-163 12-170 (175)
6 PRK05759 F0F1 ATP synthase sub 100.0 1.1E-35 2.5E-40 219.8 24.5 155 9-163 2-156 (156)
7 PRK13453 F0F1 ATP synthase sub 100.0 1.7E-35 3.8E-40 222.5 24.3 157 7-163 13-170 (173)
8 PRK06231 F0F1 ATP synthase sub 100.0 1.4E-35 3E-40 228.3 24.1 160 4-163 40-200 (205)
9 PRK14475 F0F1 ATP synthase sub 100.0 2.1E-35 4.4E-40 221.0 24.2 158 6-163 3-162 (167)
10 PRK07352 F0F1 ATP synthase sub 100.0 5.4E-35 1.2E-39 220.0 24.7 157 7-163 14-171 (174)
11 CHL00019 atpF ATP synthase CF0 100.0 1.2E-34 2.6E-39 220.0 24.3 158 6-163 18-176 (184)
12 PRK13455 F0F1 ATP synthase sub 100.0 2.5E-34 5.4E-39 218.2 23.6 158 6-163 21-179 (184)
13 TIGR03321 alt_F1F0_F0_B altern 100.0 5.4E-34 1.2E-38 225.2 24.4 155 9-163 2-157 (246)
14 PRK14474 F0F1 ATP synthase sub 100.0 1.2E-33 2.7E-38 223.3 24.4 154 10-163 3-157 (250)
15 COG0711 AtpF F0F1-type ATP syn 100.0 2.3E-33 5E-38 208.6 24.0 155 9-163 3-158 (161)
16 TIGR01144 ATP_synt_b ATP synth 100.0 1.7E-33 3.6E-38 206.5 22.9 147 17-163 1-147 (147)
17 CHL00118 atpG ATP synthase CF0 100.0 8.7E-33 1.9E-37 204.7 21.6 140 6-145 17-156 (156)
18 PRK07353 F0F1 ATP synthase sub 100.0 1.2E-32 2.5E-37 200.4 21.6 140 7-146 1-140 (140)
19 PRK09173 F0F1 ATP synthase sub 100.0 2.7E-32 6E-37 202.6 23.5 150 14-163 4-154 (159)
20 PRK09174 F0F1 ATP synthase sub 100.0 3.5E-32 7.5E-37 209.0 24.0 155 4-158 43-200 (204)
21 PRK06568 F0F1 ATP synthase sub 100.0 6.8E-32 1.5E-36 198.3 22.0 137 12-148 5-142 (154)
22 PRK13428 F0F1 ATP synthase sub 100.0 1.8E-31 3.9E-36 226.0 24.0 152 12-163 2-154 (445)
23 PRK13454 F0F1 ATP synthase sub 100.0 1.3E-30 2.8E-35 197.3 23.4 156 4-160 21-179 (181)
24 PRK08476 F0F1 ATP synthase sub 100.0 1.2E-28 2.7E-33 179.6 21.7 136 7-142 2-138 (141)
25 PF00430 ATP-synt_B: ATP synth 100.0 7E-30 1.5E-34 183.5 15.0 132 13-144 1-132 (132)
26 PRK08475 F0F1 ATP synthase sub 100.0 8.5E-28 1.8E-32 179.8 22.4 146 5-155 17-162 (167)
27 PRK06569 F0F1 ATP synthase sub 99.9 1.3E-25 2.7E-30 164.6 21.5 146 5-150 1-149 (155)
28 TIGR02926 AhaH ATP synthase ar 99.2 6.5E-10 1.4E-14 74.3 12.6 82 60-141 3-84 (85)
29 TIGR03825 FliH_bacil flagellar 99.2 5.8E-10 1.3E-14 88.7 13.3 115 49-163 23-172 (255)
30 PRK08404 V-type ATP synthase s 99.2 2.4E-09 5.1E-14 74.0 14.5 85 58-142 5-89 (103)
31 PRK09174 F0F1 ATP synthase sub 99.1 8E-08 1.7E-12 74.1 21.2 146 9-161 44-199 (204)
32 PRK08476 F0F1 ATP synthase sub 99.1 1.1E-07 2.3E-12 69.4 20.6 121 15-142 7-127 (141)
33 PRK07352 F0F1 ATP synthase sub 99.0 2.7E-07 5.9E-12 69.4 21.1 143 10-159 22-171 (174)
34 PRK13454 F0F1 ATP synthase sub 98.9 7.9E-07 1.7E-11 67.4 20.5 137 16-160 32-175 (181)
35 PRK09173 F0F1 ATP synthase sub 98.9 3.2E-06 7E-11 62.6 21.8 146 10-162 3-157 (159)
36 PRK14472 F0F1 ATP synthase sub 98.8 7.6E-06 1.7E-10 61.5 21.2 59 60-118 78-136 (175)
37 PRK14475 F0F1 ATP synthase sub 98.8 1.1E-05 2.3E-10 60.3 21.8 148 5-159 5-162 (167)
38 PRK05759 F0F1 ATP synthase sub 98.8 7.8E-06 1.7E-10 60.2 20.7 141 14-161 3-150 (156)
39 CHL00019 atpF ATP synthase CF0 98.8 1E-05 2.3E-10 61.3 21.6 141 12-159 29-176 (184)
40 PRK06568 F0F1 ATP synthase sub 98.7 1.1E-05 2.3E-10 59.6 20.1 123 6-128 2-132 (154)
41 PRK13453 F0F1 ATP synthase sub 98.7 1.2E-05 2.6E-10 60.4 20.6 114 9-122 20-140 (173)
42 PRK13461 F0F1 ATP synthase sub 98.7 1.3E-05 2.7E-10 59.4 20.4 142 9-157 7-155 (159)
43 PRK13460 F0F1 ATP synthase sub 98.7 1.5E-05 3.2E-10 59.9 20.9 49 80-128 74-122 (173)
44 PRK06231 F0F1 ATP synthase sub 98.7 1.1E-05 2.5E-10 62.2 20.2 142 9-157 50-198 (205)
45 CHL00118 atpG ATP synthase CF0 98.7 1.2E-05 2.6E-10 59.4 19.3 115 16-137 23-137 (156)
46 PRK14473 F0F1 ATP synthase sub 98.7 2.5E-05 5.3E-10 58.1 20.9 144 8-158 9-159 (164)
47 PRK14471 F0F1 ATP synthase sub 98.7 2.8E-05 6E-10 57.9 20.7 136 1-143 1-144 (164)
48 PRK13455 F0F1 ATP synthase sub 98.6 5.9E-05 1.3E-09 57.2 21.1 117 36-159 63-179 (184)
49 TIGR01144 ATP_synt_b ATP synth 98.5 9.7E-05 2.1E-09 53.8 20.3 136 15-157 3-145 (147)
50 PRK14474 F0F1 ATP synthase sub 98.5 6.1E-05 1.3E-09 59.9 20.5 143 7-156 5-154 (250)
51 PRK08475 F0F1 ATP synthase sub 98.4 0.00013 2.8E-09 54.6 19.2 127 16-149 23-149 (167)
52 PRK07353 F0F1 ATP synthase sub 98.4 0.00019 4.2E-09 51.8 19.1 116 15-137 5-120 (140)
53 TIGR03321 alt_F1F0_F0_B altern 98.4 0.00029 6.4E-09 55.8 21.6 143 8-157 6-155 (246)
54 TIGR02499 HrpE_YscL_not type I 98.4 5.4E-05 1.2E-09 56.0 16.1 98 65-162 12-109 (166)
55 PRK06328 type III secretion sy 98.4 4.9E-05 1.1E-09 59.4 16.2 101 62-162 25-127 (223)
56 COG0711 AtpF F0F1-type ATP syn 98.4 0.00045 9.8E-09 51.4 21.4 114 12-125 11-131 (161)
57 PF00430 ATP-synt_B: ATP synth 98.3 5.6E-05 1.2E-09 53.8 14.6 118 17-141 1-118 (132)
58 PF05405 Mt_ATP-synt_B: Mitoch 98.3 2.9E-05 6.2E-10 57.7 13.4 99 15-113 17-119 (163)
59 PRK01558 V-type ATP synthase s 98.3 9.6E-05 2.1E-09 56.7 15.8 97 61-161 17-113 (198)
60 PRK13428 F0F1 ATP synthase sub 98.2 0.0006 1.3E-08 58.5 21.0 113 11-123 5-124 (445)
61 PRK01005 V-type ATP synthase s 98.2 0.00052 1.1E-08 53.1 18.2 98 60-161 21-120 (207)
62 PRK06937 type III secretion sy 98.1 0.00057 1.2E-08 52.6 16.2 100 63-162 27-126 (204)
63 PRK03963 V-type ATP synthase s 98.1 0.0006 1.3E-08 52.0 15.7 98 62-160 13-110 (198)
64 PRK01005 V-type ATP synthase s 98.0 0.0002 4.4E-09 55.3 12.8 70 68-141 18-87 (207)
65 PF06188 HrpE: HrpE/YscL/FliH 98.0 0.00078 1.7E-08 51.5 15.8 98 65-162 29-126 (191)
66 PRK02292 V-type ATP synthase s 98.0 0.00083 1.8E-08 50.9 15.9 100 62-162 12-111 (188)
67 PRK09098 type III secretion sy 98.0 0.0027 5.7E-08 50.0 18.2 97 59-156 32-139 (233)
68 COG2811 NtpF Archaeal/vacuolar 97.9 0.0024 5.1E-08 44.2 15.0 74 64-137 15-88 (108)
69 PRK01194 V-type ATP synthase s 97.9 0.0016 3.4E-08 49.5 14.8 99 63-161 13-111 (185)
70 COG2811 NtpF Archaeal/vacuolar 97.8 0.0021 4.4E-08 44.5 13.7 94 51-144 12-107 (108)
71 PRK03963 V-type ATP synthase s 97.8 0.0014 3.1E-08 49.9 13.9 78 67-144 7-84 (198)
72 MTH00169 ATP8 ATP synthase F0 97.7 0.00013 2.8E-09 46.5 5.8 45 5-49 1-48 (67)
73 MTH00025 ATP8 ATP synthase F0 97.7 0.00013 2.8E-09 46.7 5.1 45 5-49 1-48 (70)
74 PRK06669 fliH flagellar assemb 97.7 0.01 2.2E-07 47.9 17.3 105 58-162 80-201 (281)
75 PRK08404 V-type ATP synthase s 97.6 0.011 2.4E-07 40.7 15.6 54 65-118 38-91 (103)
76 PF01991 vATP-synt_E: ATP synt 97.5 0.0087 1.9E-07 45.2 14.8 97 64-160 6-103 (198)
77 PF02326 YMF19: Plant ATP synt 97.4 0.00099 2.2E-08 44.5 7.4 67 8-74 6-72 (86)
78 PRK01558 V-type ATP synthase s 97.4 0.01 2.2E-07 45.6 13.2 67 61-127 28-94 (198)
79 PF03179 V-ATPase_G: Vacuolar 97.3 0.013 2.7E-07 40.4 11.8 55 72-126 9-63 (105)
80 PF01991 vATP-synt_E: ATP synt 97.2 0.017 3.8E-07 43.6 13.1 77 71-147 2-78 (198)
81 PRK01194 V-type ATP synthase s 97.0 0.036 7.9E-07 42.1 12.7 33 80-112 45-77 (185)
82 TIGR02926 AhaH ATP synthase ar 97.0 0.051 1.1E-06 35.9 12.3 62 61-122 15-76 (85)
83 COG1390 NtpE Archaeal/vacuolar 96.9 0.12 2.7E-06 39.5 14.7 85 65-149 16-100 (194)
84 PRK02292 V-type ATP synthase s 96.8 0.066 1.4E-06 40.5 13.0 37 64-100 25-61 (188)
85 PRK06569 F0F1 ATP synthase sub 96.8 0.13 2.8E-06 38.1 20.1 127 10-143 2-138 (155)
86 COG1390 NtpE Archaeal/vacuolar 96.6 0.14 3.1E-06 39.2 13.5 77 69-145 9-85 (194)
87 TIGR01069 mutS2 MutS2 family p 96.6 0.11 2.3E-06 47.7 14.6 77 34-110 514-590 (771)
88 PRK00409 recombination and DNA 96.5 0.15 3.3E-06 46.8 15.4 76 34-109 519-594 (782)
89 TIGR01147 V_ATP_synt_G vacuola 96.5 0.12 2.6E-06 36.2 11.4 35 112-146 69-103 (113)
90 PF03179 V-ATPase_G: Vacuolar 96.5 0.15 3.2E-06 35.0 12.4 47 67-113 15-61 (105)
91 PF06188 HrpE: HrpE/YscL/FliH 96.3 0.15 3.2E-06 39.0 11.9 24 76-99 29-52 (191)
92 PRK12704 phosphodiesterase; Pr 96.2 0.34 7.4E-06 42.5 15.0 6 15-20 8-13 (520)
93 COG1317 FliH Flagellar biosynt 96.2 0.46 1E-05 37.4 16.1 54 109-162 97-152 (234)
94 PF06635 NolV: Nodulation prot 96.1 0.46 9.9E-06 36.7 14.7 95 66-160 30-124 (207)
95 TIGR03825 FliH_bacil flagellar 96.1 0.54 1.2E-05 37.4 14.8 103 41-143 40-154 (255)
96 KOG3976|consensus 95.7 0.82 1.8E-05 36.1 20.9 60 16-75 99-158 (247)
97 KOG1772|consensus 95.1 0.68 1.5E-05 31.9 12.3 30 114-143 71-100 (108)
98 PRK00106 hypothetical protein; 95.0 2.3 5E-05 37.6 17.8 54 67-120 43-96 (535)
99 PF02108 FliH: Flagellar assem 94.6 0.42 9E-06 33.3 8.4 54 107-160 5-60 (128)
100 TIGR02499 HrpE_YscL_not type I 94.3 1.5 3.2E-05 32.1 11.7 13 81-93 17-29 (166)
101 PRK13386 fliH flagellar assemb 94.3 2.1 4.6E-05 33.7 12.7 55 109-163 102-158 (236)
102 TIGR01069 mutS2 MutS2 family p 94.1 2.6 5.6E-05 38.9 14.4 89 36-125 502-590 (771)
103 PF06103 DUF948: Bacterial pro 93.7 1.3 2.8E-05 29.3 11.2 60 15-75 4-63 (90)
104 PRK15322 invasion protein OrgB 93.5 2.7 5.8E-05 32.4 15.8 92 67-162 13-105 (210)
105 PRK00409 recombination and DNA 93.4 6.6 0.00014 36.3 16.5 88 36-124 507-594 (782)
106 PF06936 Selenoprotein_S: Sele 93.2 1.5 3.3E-05 33.5 9.7 21 16-36 38-58 (190)
107 PF01741 MscL: Large-conductan 92.9 0.29 6.3E-06 35.1 5.1 32 10-42 68-100 (128)
108 PF12072 DUF3552: Domain of un 92.9 3.3 7.3E-05 31.7 20.2 46 13-58 6-51 (201)
109 PF05933 Fun_ATP-synt_8: Funga 92.1 0.66 1.4E-05 27.4 5.0 40 5-44 1-43 (48)
110 PRK12705 hypothetical protein; 91.9 8.4 0.00018 33.9 19.0 31 113-143 152-182 (508)
111 KOG1772|consensus 91.8 3.1 6.7E-05 28.7 13.4 53 71-123 10-62 (108)
112 PRK09098 type III secretion sy 91.5 5.8 0.00012 31.2 14.7 37 62-98 46-82 (233)
113 PF06936 Selenoprotein_S: Sele 91.3 4.4 9.5E-05 31.0 10.2 24 19-42 37-60 (190)
114 TIGR01147 V_ATP_synt_G vacuola 89.5 5.6 0.00012 27.8 13.1 49 71-119 10-58 (113)
115 COG1970 MscL Large-conductance 89.4 1.1 2.3E-05 32.0 5.0 34 8-42 66-100 (130)
116 PRK06397 V-type ATP synthase s 88.8 5.8 0.00013 27.1 11.0 71 38-108 13-88 (111)
117 PRK09731 putative general secr 88.7 4.9 0.00011 30.4 8.5 33 9-41 33-65 (178)
118 COG1862 YajC Preprotein transl 88.7 1.1 2.4E-05 30.5 4.6 35 15-49 9-43 (97)
119 PF06103 DUF948: Bacterial pro 87.3 6.4 0.00014 25.9 11.1 22 18-39 3-24 (90)
120 PRK11637 AmiB activator; Provi 86.7 19 0.00041 30.7 17.5 48 35-82 40-87 (428)
121 PRK13955 mscL large-conductanc 84.5 2.5 5.4E-05 30.4 4.7 28 11-39 65-93 (130)
122 PRK06669 fliH flagellar assemb 83.2 22 0.00048 28.5 17.1 44 60-103 71-114 (281)
123 PF12128 DUF3584: Protein of u 82.9 49 0.0011 32.3 15.6 47 105-151 726-772 (1201)
124 KOG2302|consensus 82.8 11 0.00023 36.2 9.0 65 5-75 1352-1418(1956)
125 PRK13953 mscL large-conductanc 82.2 3.2 7E-05 29.6 4.5 29 11-40 65-94 (125)
126 PRK12704 phosphodiesterase; Pr 82.2 35 0.00076 30.1 15.7 35 110-144 161-195 (520)
127 COG4741 Predicted secreted end 82.1 18 0.0004 26.8 12.8 22 33-54 24-45 (175)
128 PRK06032 fliH flagellar assemb 81.4 21 0.00046 27.1 13.3 52 111-162 69-123 (199)
129 KOG1962|consensus 81.0 24 0.00053 27.5 12.1 65 19-86 103-167 (216)
130 TIGR03319 YmdA_YtgF conserved 80.6 40 0.00086 29.7 15.7 33 112-144 157-189 (514)
131 TIGR00220 mscL large conductan 79.2 4.7 0.0001 28.8 4.5 28 11-39 67-95 (127)
132 PF05103 DivIVA: DivIVA protei 79.0 0.63 1.4E-05 32.7 0.0 48 69-120 66-113 (131)
133 PF03938 OmpH: Outer membrane 78.5 22 0.00048 25.6 14.5 45 97-141 84-128 (158)
134 PRK13954 mscL large-conductanc 78.2 4.2 9.1E-05 28.7 4.0 28 11-39 62-90 (119)
135 PRK00567 mscL large-conductanc 77.3 4.8 0.0001 29.0 4.2 29 10-39 71-100 (134)
136 PF04612 T2SM: Type II secreti 77.2 0.76 1.6E-05 33.5 0.0 48 14-61 17-64 (160)
137 PRK05585 yajC preprotein trans 76.9 7.3 0.00016 26.9 4.9 32 15-46 18-49 (106)
138 PRK10930 FtsH protease regulat 76.4 49 0.0011 28.4 11.7 38 89-126 267-304 (419)
139 PF05103 DivIVA: DivIVA protei 76.4 1.3 2.8E-05 31.1 1.1 40 88-127 70-109 (131)
140 TIGR00739 yajC preprotein tran 76.2 6.3 0.00014 26.0 4.2 26 19-44 7-32 (84)
141 cd03404 Band_7_HflK Band_7_Hfl 75.8 37 0.0008 26.7 9.7 39 88-126 197-235 (266)
142 PRK00106 hypothetical protein; 75.6 58 0.0013 28.9 15.7 32 112-143 178-209 (535)
143 MTH00036 ATP8 ATP synthase F0 75.3 5.9 0.00013 24.0 3.5 22 5-26 1-22 (54)
144 PRK10930 FtsH protease regulat 75.0 37 0.0008 29.2 9.6 35 62-96 255-289 (419)
145 PRK13952 mscL large-conductanc 74.5 6.7 0.00015 28.6 4.3 29 10-39 83-112 (142)
146 PRK05886 yajC preprotein trans 74.2 9.9 0.00021 26.4 4.9 25 19-43 8-32 (109)
147 KOG0718|consensus 73.7 28 0.00062 30.4 8.4 30 14-43 377-406 (546)
148 PRK09039 hypothetical protein; 73.1 53 0.0012 27.3 20.6 23 15-37 26-48 (343)
149 PRK00888 ftsB cell division pr 73.0 27 0.00059 23.9 8.8 27 49-75 34-60 (105)
150 MTH00133 ATP8 ATP synthase F0 72.3 5.8 0.00012 23.9 3.0 24 5-28 1-24 (55)
151 COG3599 DivIVA Cell division i 72.3 44 0.00095 26.0 13.8 33 69-101 80-112 (212)
152 PRK06800 fliH flagellar assemb 71.9 43 0.00093 25.7 16.0 49 102-150 82-130 (228)
153 TIGR01933 hflK HflK protein. H 71.7 47 0.001 26.1 11.8 17 34-50 103-119 (261)
154 PF00895 ATP-synt_8: ATP synth 70.3 8.5 0.00018 22.5 3.5 10 5-14 1-10 (54)
155 MTH00123 ATP8 ATP synthase F0 70.2 9.2 0.0002 22.8 3.6 23 5-27 1-23 (54)
156 PRK06531 yajC preprotein trans 69.8 9.9 0.00021 26.6 4.2 21 25-45 12-32 (113)
157 PF04977 DivIC: Septum formati 69.7 25 0.00053 22.0 6.2 11 30-40 10-20 (80)
158 PF05957 DUF883: Bacterial pro 68.7 31 0.00067 22.8 11.0 46 58-103 4-49 (94)
159 PRK15354 type III secretion sy 68.6 54 0.0012 25.6 13.5 46 69-118 44-89 (224)
160 PF02699 YajC: Preprotein tran 68.0 8 0.00017 25.3 3.2 28 16-43 3-30 (82)
161 TIGR01932 hflC HflC protein. H 67.6 67 0.0015 26.3 10.8 12 133-144 287-298 (317)
162 PF15361 RIC3: Resistance to i 67.4 3.5 7.6E-05 30.4 1.6 28 56-83 124-151 (152)
163 COG0233 Frr Ribosome recycling 66.7 55 0.0012 25.0 9.8 82 31-115 102-183 (187)
164 PF15178 TOM_sub5: Mitochondri 66.4 10 0.00022 22.2 3.0 29 1-29 4-39 (51)
165 PF09726 Macoilin: Transmembra 66.3 1.1E+02 0.0024 28.2 15.1 25 105-129 539-563 (697)
166 COG4023 SBH1 Preprotein transl 66.0 5.7 0.00012 24.2 2.0 28 8-35 30-57 (57)
167 MTH00171 ATP8 ATP synthase F0 65.4 15 0.00033 21.7 3.9 23 5-27 1-23 (54)
168 cd03404 Band_7_HflK Band_7_Hfl 65.4 65 0.0014 25.3 11.4 22 71-92 195-216 (266)
169 PRK14148 heat shock protein Gr 65.4 60 0.0013 24.9 8.8 9 145-153 147-155 (195)
170 COG5085 Predicted membrane pro 65.3 48 0.001 25.8 7.3 42 14-55 88-132 (230)
171 KOG4503|consensus 65.3 48 0.001 25.8 7.3 42 14-55 88-132 (230)
172 cd03407 Band_7_4 A subgroup of 65.1 67 0.0015 25.3 9.1 17 35-52 101-117 (262)
173 COG3462 Predicted membrane pro 63.8 8.3 0.00018 26.8 2.7 9 65-73 105-113 (117)
174 PF01093 Clusterin: Clusterin; 63.1 70 0.0015 27.7 8.8 59 32-90 24-85 (436)
175 PF06129 Chordopox_G3: Chordop 62.7 7.9 0.00017 26.9 2.5 25 15-39 3-27 (109)
176 PF05529 Bap31: B-cell recepto 62.4 64 0.0014 24.2 12.9 23 18-40 106-128 (192)
177 MTH00102 ATP8 ATP synthase F0 62.4 19 0.00041 22.7 4.0 22 5-26 1-22 (67)
178 TIGR01933 hflK HflK protein. H 61.8 76 0.0016 24.9 11.3 20 72-91 169-188 (261)
179 COG3224 Uncharacterized protei 61.8 18 0.00038 27.5 4.4 36 6-41 143-178 (195)
180 PRK05687 fliH flagellar assemb 61.0 78 0.0017 24.7 17.7 51 112-162 118-170 (246)
181 PF14899 DUF4492: Domain of un 60.3 20 0.00044 22.4 3.8 25 16-40 24-48 (64)
182 PRK06328 type III secretion sy 59.9 81 0.0017 24.6 14.8 30 61-90 35-64 (223)
183 PF12273 RCR: Chitin synthesis 59.9 11 0.00023 26.8 2.9 13 14-26 4-16 (130)
184 COG3105 Uncharacterized protei 59.9 62 0.0014 23.3 12.4 80 11-97 2-82 (138)
185 COG4942 Membrane-bound metallo 59.7 1.2E+02 0.0025 26.3 18.3 57 35-91 31-87 (420)
186 MTH00072 ATP8 ATP synthase F0 59.7 20 0.00044 21.1 3.7 19 5-23 1-19 (54)
187 PRK14158 heat shock protein Gr 58.3 83 0.0018 24.1 10.2 13 143-155 145-157 (194)
188 cd03405 Band_7_HflC Band_7_Hfl 58.2 84 0.0018 24.2 9.3 19 35-53 109-127 (242)
189 TIGR03142 cytochro_ccmI cytoch 57.6 54 0.0012 22.7 6.1 17 64-80 37-53 (117)
190 PF03908 Sec20: Sec20; InterP 57.4 11 0.00025 24.9 2.5 22 15-36 71-92 (92)
191 PHA01815 hypothetical protein 57.0 8.4 0.00018 22.5 1.6 22 11-32 30-52 (55)
192 PF10961 DUF2763: Protein of u 56.8 11 0.00024 25.3 2.4 15 12-26 22-36 (91)
193 cd03401 Band_7_prohibitin Band 56.1 52 0.0011 24.4 6.3 8 36-43 111-118 (196)
194 TIGR01932 hflC HflC protein. H 56.0 1.1E+02 0.0024 25.0 13.0 24 89-112 231-254 (317)
195 COG4736 CcoQ Cbb3-type cytochr 54.9 16 0.00035 22.6 2.7 28 15-42 12-39 (60)
196 PF11119 DUF2633: Protein of u 54.8 48 0.001 20.4 5.1 24 13-36 10-33 (59)
197 PF13334 DUF4094: Domain of un 54.3 19 0.00041 24.3 3.2 25 11-35 3-27 (95)
198 COG3064 TolA Membrane protein 54.1 1.3E+02 0.0028 25.1 13.1 13 14-26 19-31 (387)
199 PF06716 DUF1201: Protein of u 54.0 42 0.00091 19.7 4.1 21 17-37 15-36 (54)
200 PRK06771 hypothetical protein; 53.2 68 0.0015 21.6 6.2 23 34-56 22-44 (93)
201 PRK14161 heat shock protein Gr 52.9 98 0.0021 23.4 10.8 54 51-104 21-74 (178)
202 PRK11677 hypothetical protein; 52.6 85 0.0019 22.6 12.0 41 59-99 39-79 (134)
203 PRK14162 heat shock protein Gr 52.1 1.1E+02 0.0023 23.5 8.9 38 62-99 52-89 (194)
204 PRK10780 periplasmic chaperone 52.0 92 0.002 22.8 16.0 94 47-140 34-134 (165)
205 PF10107 Endonuc_Holl: Endonuc 51.9 96 0.0021 23.0 11.4 48 28-76 8-55 (156)
206 PF00672 HAMP: HAMP domain; I 51.7 13 0.00029 22.5 2.1 27 15-41 6-32 (70)
207 TIGR02832 spo_yunB sporulation 51.6 42 0.00091 25.9 5.1 35 15-49 12-46 (204)
208 KOG2412|consensus 51.4 1.8E+02 0.0039 26.0 10.3 48 42-89 207-254 (591)
209 PF10805 DUF2730: Protein of u 49.8 81 0.0018 21.5 10.3 14 7-20 4-17 (106)
210 PRK15322 invasion protein OrgB 48.6 1.3E+02 0.0027 23.4 13.9 65 51-118 8-72 (210)
211 PF01765 RRF: Ribosome recycli 48.5 1.1E+02 0.0023 22.5 11.2 31 42-72 91-121 (165)
212 PF06295 DUF1043: Protein of u 48.1 96 0.0021 21.9 11.6 43 60-102 36-78 (128)
213 cd03405 Band_7_HflC Band_7_Hfl 47.9 1.3E+02 0.0027 23.2 9.2 6 35-40 100-105 (242)
214 COG1983 PspC Putative stress-r 47.8 17 0.00037 23.2 2.1 13 2-14 19-31 (70)
215 COG0330 HflC Membrane protease 47.6 1.4E+02 0.0031 23.7 10.6 18 73-90 207-224 (291)
216 PF08776 VASP_tetra: VASP tetr 47.5 52 0.0011 18.6 5.0 25 81-105 11-35 (40)
217 COG1422 Predicted membrane pro 47.3 1.3E+02 0.0028 23.2 9.7 28 5-32 38-68 (201)
218 PF12669 P12: Virus attachment 47.2 22 0.00047 21.7 2.4 13 16-28 4-16 (58)
219 MTH00147 ATP8 ATP synthase F0 47.0 30 0.00066 20.5 3.0 10 5-14 1-10 (51)
220 KOG4759|consensus 46.9 1.5E+02 0.0033 23.8 8.9 66 59-127 195-260 (263)
221 MTH00186 ATP8 ATP synthase F0 46.3 47 0.001 19.5 3.7 10 5-14 1-10 (52)
222 PF10112 Halogen_Hydrol: 5-bro 46.1 1.3E+02 0.0028 22.7 13.5 16 46-61 72-87 (199)
223 PF05545 FixQ: Cbb3-type cytoc 45.9 37 0.00081 19.6 3.2 19 15-33 13-31 (49)
224 PRK11029 FtsH protease regulat 45.8 1.8E+02 0.0038 24.2 9.9 11 134-144 298-308 (334)
225 PRK14144 heat shock protein Gr 45.7 1.4E+02 0.003 23.0 8.8 10 144-153 150-159 (199)
226 PF05010 TACC: Transforming ac 45.6 1.4E+02 0.0031 23.1 16.6 14 149-162 191-204 (207)
227 COG4046 Uncharacterized protei 45.4 75 0.0016 26.4 5.9 26 46-71 44-69 (368)
228 PF12832 MFS_1_like: MFS_1 lik 44.7 34 0.00073 21.8 3.2 49 2-50 17-68 (77)
229 PHA02691 hypothetical protein; 44.3 25 0.00054 24.4 2.5 25 15-39 4-28 (110)
230 TIGR00540 hemY_coli hemY prote 43.9 1.9E+02 0.0042 24.2 9.0 10 36-45 72-81 (409)
231 KOG1029|consensus 43.3 2.9E+02 0.0064 26.1 13.6 11 98-108 398-408 (1118)
232 PF05546 She9_MDM33: She9 / Md 43.3 1.4E+02 0.003 23.2 6.7 20 15-36 157-176 (207)
233 PRK14140 heat shock protein Gr 43.1 1.5E+02 0.0032 22.7 11.1 9 145-153 144-152 (191)
234 PRK14154 heat shock protein Gr 42.9 1.6E+02 0.0034 22.9 9.6 44 61-104 64-107 (208)
235 PRK09470 cpxA two-component se 42.8 1.4E+02 0.003 24.7 7.5 21 25-45 183-203 (461)
236 TIGR03141 cytochro_ccmD heme e 42.7 58 0.0013 18.6 3.7 7 1-7 1-7 (45)
237 PF05814 DUF843: Baculovirus p 42.7 22 0.00047 23.5 2.0 21 15-35 28-48 (83)
238 PF04156 IncA: IncA protein; 42.0 1.4E+02 0.0031 22.1 16.3 29 50-78 82-110 (191)
239 PF01086 Clathrin_lg_ch: Clath 41.7 77 0.0017 24.7 5.3 54 71-124 113-166 (225)
240 smart00030 CLb CLUSTERIN Beta 41.6 1.6E+02 0.0036 22.7 8.8 55 32-86 30-87 (206)
241 TIGR02338 gimC_beta prefoldin, 41.3 1.1E+02 0.0025 20.8 7.1 37 34-70 66-102 (110)
242 PRK09702 PTS system arbutin-sp 41.2 44 0.00095 24.8 3.7 19 15-33 13-31 (161)
243 PRK01433 hscA chaperone protei 41.1 2.7E+02 0.0058 25.0 10.4 44 74-117 509-552 (595)
244 PRK14163 heat shock protein Gr 40.4 1.8E+02 0.0038 22.7 9.4 10 144-153 139-148 (214)
245 PF05405 Mt_ATP-synt_B: Mitoch 39.6 1.5E+02 0.0032 21.6 14.9 32 28-59 38-69 (163)
246 PF09424 YqeY: Yqey-like prote 39.6 1.4E+02 0.0031 21.5 11.5 28 136-163 80-107 (143)
247 PF04689 S1FA: DNA binding pro 39.6 25 0.00054 22.1 1.8 26 8-33 10-35 (69)
248 PHA02650 hypothetical protein; 39.4 22 0.00049 23.2 1.6 10 33-42 70-79 (81)
249 PF10960 DUF2762: Protein of u 39.0 1E+02 0.0022 19.6 8.5 12 42-53 39-50 (71)
250 PRK01253 preprotein translocas 38.8 21 0.00045 21.6 1.4 27 6-32 25-52 (54)
251 PF05957 DUF883: Bacterial pro 38.5 1.1E+02 0.0025 20.0 9.9 25 72-96 7-31 (94)
252 cd00632 Prefoldin_beta Prefold 38.5 1.2E+02 0.0027 20.3 8.8 42 33-74 61-102 (105)
253 PF06472 ABC_membrane_2: ABC t 38.4 1.5E+02 0.0033 23.6 6.7 29 15-43 173-201 (281)
254 PF07047 OPA3: Optic atrophy 3 38.0 1.5E+02 0.0032 21.1 7.5 27 12-38 76-102 (134)
255 COG4575 ElaB Uncharacterized c 37.9 1.3E+02 0.0029 20.6 9.2 38 55-92 11-48 (104)
256 PHA02973 hypothetical protein; 37.3 25 0.00055 24.0 1.7 23 17-39 4-26 (102)
257 PF06160 EzrA: Septation ring 36.9 3.1E+02 0.0066 24.4 16.2 32 16-48 7-38 (560)
258 COG1766 fliF Flagellar basal b 36.7 57 0.0012 29.1 4.3 31 15-45 444-474 (545)
259 PF13937 DUF4212: Domain of un 36.6 1.1E+02 0.0023 20.1 4.5 34 11-44 43-77 (81)
260 PF06196 DUF997: Protein of un 36.4 43 0.00092 21.9 2.7 22 15-36 51-72 (80)
261 PHA02513 V1 structural protein 36.4 66 0.0014 22.5 3.7 26 16-41 67-92 (135)
262 PF06170 DUF983: Protein of un 36.2 87 0.0019 20.7 4.2 30 11-40 51-80 (86)
263 COG2274 SunT ABC-type bacterio 35.8 69 0.0015 29.5 4.8 32 11-42 292-323 (709)
264 PHA00739 V3 structural protein 35.7 35 0.00076 22.5 2.1 24 18-41 7-30 (92)
265 PRK09702 PTS system arbutin-sp 35.3 44 0.00095 24.8 2.9 19 13-31 16-34 (161)
266 MTH00261 ATP8 ATP synthase F0 35.1 72 0.0016 19.5 3.3 27 7-33 3-32 (68)
267 PHA03066 Hypothetical protein; 34.8 39 0.00086 23.4 2.4 24 16-39 5-28 (110)
268 cd00520 RRF Ribosome recycling 34.6 2E+02 0.0043 21.6 8.9 16 103-118 154-169 (179)
269 PF08112 ATP-synt_E_2: ATP syn 34.3 1.1E+02 0.0023 18.4 7.0 44 81-124 11-54 (56)
270 PRK00720 tatA twin arginine tr 34.3 1.2E+02 0.0026 19.8 4.4 23 16-40 7-29 (78)
271 PRK06397 V-type ATP synthase s 33.7 1.6E+02 0.0034 20.2 11.4 50 57-106 22-71 (111)
272 PF14613 DUF4449: Protein of u 33.6 2E+02 0.0044 21.4 11.9 19 70-88 52-70 (164)
273 MTH00158 ATP8 ATP synthase F0 33.5 79 0.0017 16.7 3.6 10 5-14 1-10 (32)
274 COG3883 Uncharacterized protei 33.4 2.6E+02 0.0056 22.6 15.2 25 105-129 85-109 (265)
275 PRK14143 heat shock protein Gr 33.3 2.4E+02 0.0053 22.3 10.5 12 143-154 173-184 (238)
276 PF04631 Baculo_44: Baculoviru 33.1 75 0.0016 26.8 4.1 14 21-34 6-19 (371)
277 TIGR02338 gimC_beta prefoldin, 33.1 1.6E+02 0.0034 20.0 7.7 12 32-43 52-63 (110)
278 PF11395 DUF2873: Protein of u 32.9 93 0.002 17.3 3.8 20 10-29 7-27 (43)
279 PF04977 DivIC: Septum formati 32.9 1.2E+02 0.0027 18.7 6.1 31 33-63 19-49 (80)
280 PRK00083 frr ribosome recyclin 32.7 2.2E+02 0.0047 21.5 9.6 20 101-120 156-175 (185)
281 TIGR01193 bacteriocin_ABC ABC- 32.6 2.5E+02 0.0054 25.4 7.9 18 22-39 305-322 (708)
282 TIGR03785 marine_sort_HK prote 32.4 3.9E+02 0.0085 24.4 15.4 16 26-41 424-439 (703)
283 PF02203 TarH: Tar ligand bind 32.3 1.8E+02 0.004 20.5 9.7 32 5-36 2-33 (171)
284 PHA03399 pif3 per os infectivi 32.3 1.1E+02 0.0023 23.7 4.6 30 16-45 3-32 (200)
285 PF14184 YrvL: Regulatory prot 31.8 59 0.0013 23.3 3.0 31 2-32 26-56 (132)
286 TIGR03647 Na_symport_sm probab 31.6 1.5E+02 0.0032 19.2 4.6 33 11-43 39-72 (77)
287 PTZ00473 Plasmodium Vir superf 31.6 58 0.0012 27.9 3.3 36 15-52 273-308 (420)
288 PRK04598 tatA twin arginine tr 31.3 1.4E+02 0.0031 19.5 4.5 9 16-24 7-15 (81)
289 COG1842 PspA Phage shock prote 31.2 2.6E+02 0.0056 21.9 16.1 56 34-90 24-79 (225)
290 PRK05978 hypothetical protein; 31.1 96 0.0021 22.7 4.1 27 15-41 99-125 (148)
291 PRK14155 heat shock protein Gr 30.9 2.5E+02 0.0055 21.7 9.9 37 64-100 28-64 (208)
292 PRK15347 two component system 30.9 4.3E+02 0.0093 24.4 16.8 20 23-42 312-331 (921)
293 TIGR00496 frr ribosome recycli 30.9 2.3E+02 0.005 21.2 9.6 18 101-118 147-164 (176)
294 TIGR02203 MsbA_lipidA lipid A 30.9 2.3E+02 0.0049 24.8 7.1 12 26-37 168-179 (571)
295 PF09682 Holin_LLH: Phage holi 30.8 1.7E+02 0.0038 19.8 11.0 13 31-43 23-35 (108)
296 PRK14139 heat shock protein Gr 30.7 2.4E+02 0.0052 21.4 10.7 11 143-153 135-145 (185)
297 PF12273 RCR: Chitin synthesis 30.5 33 0.00072 24.1 1.6 6 23-28 9-14 (130)
298 TIGR00782 ccoP cytochrome c ox 30.5 48 0.0011 26.6 2.7 15 15-29 34-48 (285)
299 KOG0977|consensus 30.4 4E+02 0.0087 23.9 12.5 41 88-128 241-281 (546)
300 COG4768 Uncharacterized protei 30.3 2.1E+02 0.0046 20.7 18.9 68 14-82 8-75 (139)
301 PF03911 Sec61_beta: Sec61beta 30.1 44 0.00095 18.9 1.7 25 7-31 15-40 (41)
302 PRK00247 putative inner membra 30.1 3.7E+02 0.008 23.3 16.3 14 16-29 261-274 (429)
303 PF04020 DUF360: Membrane prot 29.8 81 0.0018 21.6 3.3 23 15-37 30-52 (108)
304 PF14715 FixP_N: N-terminal do 29.7 80 0.0017 18.7 2.9 14 15-28 28-41 (51)
305 PF02936 COX4: Cytochrome c ox 29.7 47 0.001 24.1 2.2 25 18-42 84-109 (142)
306 PRK10404 hypothetical protein; 29.7 1.8E+02 0.004 19.7 9.9 39 57-95 10-48 (101)
307 PF13758 Prefoldin_3: Prefoldi 29.6 1.3E+02 0.0027 20.6 4.1 31 34-64 67-97 (99)
308 PF11382 DUF3186: Protein of u 29.5 3.1E+02 0.0068 22.4 8.7 65 8-72 2-69 (308)
309 MTH00260 ATP8 ATP synthase F0 29.4 75 0.0016 19.0 2.7 31 5-35 1-33 (53)
310 PRK13414 flagellar biosynthesi 29.2 1.8E+02 0.004 21.9 5.2 37 10-46 60-96 (209)
311 PRK14157 heat shock protein Gr 29.1 2.9E+02 0.0062 21.8 8.7 9 145-153 177-185 (227)
312 PRK13561 putative diguanylate 28.8 2.9E+02 0.0064 24.5 7.6 23 23-45 162-184 (651)
313 PF11657 Activator-TraM: Trans 28.8 2.3E+02 0.0051 20.6 13.1 29 73-101 64-92 (144)
314 PF05366 Sarcolipin: Sarcolipi 28.7 78 0.0017 16.5 2.3 11 19-29 16-26 (31)
315 COG3149 PulM Type II secretory 28.4 2.6E+02 0.0057 21.1 6.3 18 23-40 46-63 (181)
316 PRK14153 heat shock protein Gr 28.4 2.7E+02 0.0059 21.3 9.3 9 145-153 140-148 (194)
317 KOG4031|consensus 28.3 2.9E+02 0.0062 21.5 8.9 52 72-123 108-159 (216)
318 PTZ00229 variable surface prot 28.2 34 0.00074 28.3 1.4 33 14-48 248-280 (317)
319 PRK10633 hypothetical protein; 28.2 89 0.0019 20.5 3.1 19 16-34 52-70 (80)
320 PF07208 DUF1414: Protein of u 28.1 98 0.0021 17.9 2.9 26 137-162 14-39 (44)
321 COG4726 PilX Tfp pilus assembl 28.0 2.8E+02 0.0061 21.3 6.7 57 17-75 16-72 (196)
322 PRK14151 heat shock protein Gr 27.9 2.6E+02 0.0057 21.0 10.0 13 143-155 126-138 (176)
323 PF08496 Peptidase_S49_N: Pept 27.7 2.5E+02 0.0054 20.6 7.7 17 15-31 11-27 (155)
324 COG3190 FliO Flagellar biogene 27.5 77 0.0017 23.0 3.0 22 15-36 32-53 (137)
325 PF10183 ESSS: ESSS subunit of 27.5 65 0.0014 22.0 2.5 24 15-38 62-85 (105)
326 PF12732 YtxH: YtxH-like prote 27.4 1.6E+02 0.0035 18.4 8.5 20 16-35 2-21 (74)
327 PRK14068 exodeoxyribonuclease 27.4 1.8E+02 0.0038 18.8 5.4 36 50-85 28-63 (76)
328 PRK02958 tatA twin arginine tr 27.2 70 0.0015 20.6 2.5 9 16-24 7-15 (73)
329 COG1193 Mismatch repair ATPase 27.1 5.2E+02 0.011 24.2 13.2 66 37-102 510-575 (753)
330 PTZ00491 major vault protein; 26.9 5.6E+02 0.012 24.4 14.4 24 119-142 759-782 (850)
331 PRK04561 tatA twin arginine tr 26.8 71 0.0015 20.7 2.4 8 16-23 7-14 (75)
332 PF14975 DUF4512: Domain of un 26.8 84 0.0018 21.0 2.8 20 22-41 9-28 (88)
333 KOG2077|consensus 26.7 2.7E+02 0.0059 25.3 6.6 48 40-87 334-381 (832)
334 PRK10697 DNA-binding transcrip 26.6 1E+02 0.0022 21.7 3.4 12 3-14 24-35 (118)
335 PF11471 Sugarporin_N: Maltopo 26.5 1.6E+02 0.0035 18.0 5.5 30 39-68 29-58 (60)
336 COG3071 HemY Uncharacterized e 26.5 95 0.002 26.5 3.7 16 26-41 60-77 (400)
337 PRK14145 heat shock protein Gr 26.3 3E+02 0.0066 21.1 10.1 9 145-153 149-157 (196)
338 cd01324 cbb3_Oxidase_CcoQ Cyto 26.2 77 0.0017 18.5 2.3 20 16-35 14-33 (48)
339 PRK04387 hypothetical protein; 25.8 60 0.0013 21.8 2.0 24 1-25 1-26 (90)
340 PF06695 Sm_multidrug_ex: Puta 25.8 2.3E+02 0.0051 19.7 8.0 26 15-42 22-47 (121)
341 KOG2668|consensus 25.8 4.2E+02 0.0091 22.6 13.8 41 99-139 329-369 (428)
342 PF04995 CcmD: Heme exporter p 25.7 1.3E+02 0.0029 17.1 3.3 10 19-28 9-18 (46)
343 PRK00442 tatA twin arginine tr 25.7 2.2E+02 0.0047 19.2 4.8 7 16-22 7-13 (92)
344 PF07466 DUF1517: Protein of u 25.6 69 0.0015 26.1 2.7 10 5-14 51-60 (289)
345 PRK01614 tatE twin arginine tr 25.6 2.1E+02 0.0045 19.0 4.4 23 16-40 7-29 (85)
346 PF04505 Dispanin: Interferon- 25.2 1.3E+02 0.0029 19.4 3.6 52 9-63 14-65 (82)
347 KOG4702|consensus 25.2 91 0.002 20.0 2.6 13 61-73 47-59 (77)
348 COG2770 ResE FOG: HAMP domain 25.1 1.8E+02 0.004 18.5 4.3 37 15-51 13-49 (83)
349 PRK10780 periplasmic chaperone 25.0 2.8E+02 0.006 20.2 14.8 81 55-135 53-133 (165)
350 PRK01770 sec-independent trans 24.9 3E+02 0.0066 20.7 11.9 10 31-40 20-29 (171)
351 PF08078 PsaX: PsaX family; I 24.9 1.3E+02 0.0028 16.5 2.8 11 15-25 21-31 (37)
352 TIGR03796 NHPM_micro_ABC1 NHPM 24.8 4E+02 0.0087 24.1 7.8 13 25-37 306-318 (710)
353 PRK12800 fliF flagellar MS-rin 24.8 1.2E+02 0.0027 27.2 4.3 26 15-40 461-486 (574)
354 PRK10297 PTS system N,N'-diace 24.7 2.8E+02 0.006 24.1 6.4 35 16-50 406-440 (452)
355 PF09425 CCT_2: Divergent CCT 24.6 58 0.0013 16.8 1.4 15 35-49 7-21 (27)
356 PRK14164 heat shock protein Gr 24.5 3.5E+02 0.0075 21.2 8.2 10 144-153 170-179 (218)
357 PF05256 UPF0223: Uncharacteri 24.3 53 0.0011 21.9 1.5 24 1-25 1-26 (88)
358 COG0475 KefB Kef-type K+ trans 24.0 1.6E+02 0.0034 25.0 4.7 29 14-42 188-216 (397)
359 PRK14149 heat shock protein Gr 23.8 3.4E+02 0.0073 20.8 8.1 6 147-152 144-149 (191)
360 TIGR02977 phageshock_pspA phag 23.8 3.4E+02 0.0073 20.8 14.8 53 39-91 28-80 (219)
361 PHA00276 phage lambda Rz-like 23.7 3E+02 0.0064 20.1 8.2 71 19-89 11-82 (144)
362 TIGR03752 conj_TIGR03752 integ 23.6 5.1E+02 0.011 22.8 12.6 26 45-70 59-84 (472)
363 COG4968 PilE Tfp pilus assembl 23.5 3E+02 0.0064 20.0 7.4 50 13-68 7-57 (139)
364 PRK14147 heat shock protein Gr 23.3 3.2E+02 0.007 20.4 9.6 11 144-154 122-132 (172)
365 PF06024 DUF912: Nucleopolyhed 23.2 47 0.001 22.5 1.2 11 22-32 75-85 (101)
366 PF02609 Exonuc_VII_S: Exonucl 23.1 1.7E+02 0.0037 17.1 5.5 32 50-81 21-52 (53)
367 PRK00977 exodeoxyribonuclease 23.1 2.2E+02 0.0048 18.4 5.4 36 50-85 32-67 (80)
368 PF04012 PspA_IM30: PspA/IM30 22.8 3.4E+02 0.0075 20.5 14.9 54 35-89 24-77 (221)
369 PF12459 DUF3687: D-Ala-teicho 22.7 1.3E+02 0.0029 17.2 2.8 19 15-33 12-30 (42)
370 PRK11029 FtsH protease regulat 22.5 4.5E+02 0.0098 21.8 10.9 6 78-83 245-250 (334)
371 PF04113 Gpi16: Gpi16 subunit, 22.5 1.1E+02 0.0023 27.5 3.5 43 3-48 499-541 (564)
372 PRK01833 tatA twin arginine tr 22.4 1E+02 0.0022 19.9 2.5 10 16-25 7-16 (74)
373 PRK11829 biofilm formation reg 22.3 4.3E+02 0.0094 23.4 7.4 25 18-42 158-182 (660)
374 TIGR00540 hemY_coli hemY prote 22.3 4.6E+02 0.01 21.9 8.4 19 15-33 41-59 (409)
375 KOG4304|consensus 22.3 2.3E+02 0.0051 22.5 5.1 59 29-94 31-89 (250)
376 cd07662 BAR_SNX6 The Bin/Amphi 22.1 3.9E+02 0.0085 20.9 8.4 42 95-136 156-197 (218)
377 TIGR00779 cad cadmium resistan 22.1 2E+02 0.0043 22.1 4.5 41 3-43 115-162 (193)
378 PTZ00250 variable surface prot 22.0 1.5E+02 0.0033 24.9 4.1 19 23-41 288-306 (350)
379 KOG2302|consensus 22.0 8E+02 0.017 24.4 9.3 56 15-78 1359-1414(1956)
380 PRK04098 sec-independent trans 22.0 3.4E+02 0.0073 20.1 11.6 9 32-40 21-29 (158)
381 COG3071 HemY Uncharacterized e 22.0 2.9E+02 0.0063 23.7 5.8 27 15-41 41-67 (400)
382 PRK12855 hypothetical protein; 21.7 1.9E+02 0.004 19.8 3.9 16 65-80 47-62 (103)
383 TIGR00782 ccoP cytochrome c ox 21.5 2.1E+02 0.0046 22.9 4.9 24 15-38 29-52 (285)
384 PF14821 Thr_synth_N: Threonin 21.5 1.4E+02 0.003 19.2 3.1 29 131-159 50-78 (79)
385 PHA03255 BDLF3; Provisional 21.2 96 0.0021 23.5 2.5 17 11-27 184-200 (234)
386 PRK12856 hypothetical protein; 21.2 2E+02 0.0043 19.7 3.9 16 65-80 47-62 (103)
387 PRK03449 putative inner membra 21.0 4.7E+02 0.01 21.5 8.7 14 27-40 42-55 (304)
388 PF06682 DUF1183: Protein of u 21.0 94 0.002 25.8 2.7 20 14-33 158-177 (318)
389 PF08390 TRAM1: TRAM1-like pro 20.9 2.2E+02 0.0047 17.5 4.3 26 15-40 33-58 (65)
390 PRK09510 tolA cell envelope in 20.9 5.3E+02 0.012 22.0 17.8 15 14-28 19-33 (387)
391 PF13664 DUF4149: Domain of un 20.8 2.3E+02 0.0051 18.4 4.3 17 28-44 84-100 (101)
392 PF10841 DUF2644: Protein of u 20.8 1.3E+02 0.0028 18.6 2.6 23 11-33 12-34 (60)
393 PHA03030 hypothetical protein; 20.7 99 0.0021 21.3 2.3 13 18-30 7-19 (122)
394 PF06422 PDR_CDR: CDR ABC tran 20.7 1.5E+02 0.0032 20.1 3.2 9 20-28 57-65 (103)
395 TIGR01280 xseB exodeoxyribonuc 20.4 2.3E+02 0.005 17.6 5.4 34 51-84 24-57 (67)
396 TIGR02876 spore_yqfD sporulati 20.3 65 0.0014 27.2 1.7 23 11-33 84-106 (382)
397 PF08412 Ion_trans_N: Ion tran 20.2 1.5E+02 0.0033 19.2 3.0 21 7-27 38-60 (77)
398 PRK14584 hmsS hemin storage sy 20.1 1.9E+02 0.0041 21.4 3.9 22 15-36 20-41 (153)
399 PHA02690 hypothetical protein; 20.1 1.1E+02 0.0024 20.0 2.3 33 3-35 33-66 (90)
400 PF11346 DUF3149: Protein of u 20.1 1.9E+02 0.0041 16.5 3.5 9 6-14 5-13 (42)
401 PF01920 Prefoldin_2: Prefoldi 20.1 2.6E+02 0.0057 18.2 7.1 40 34-73 61-100 (106)
402 KOG1029|consensus 20.0 7.7E+02 0.017 23.5 14.5 10 40-49 315-324 (1118)
403 PHA03047 IMV membrane receptor 20.0 1.4E+02 0.0031 17.9 2.6 19 16-34 33-51 (53)
No 1
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=100.00 E-value=2.2e-38 Score=238.25 Aligned_cols=159 Identities=18% Similarity=0.200 Sum_probs=156.2
Q ss_pred cccccCch-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 5 YAIQSADT-GAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRI 83 (163)
Q Consensus 5 ~~~l~~~~-~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii 83 (163)
+|+++||| ++||++|||+||+|+|++|+||||.++|++|++.|.+++++|+..+.+++..+.+|+.+|.+++.++.+|+
T Consensus 9 ~~~l~~~~~~~~~~~i~Flil~~iL~~~~~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii 88 (173)
T PRK13460 9 LSLLDVNPGLVVWTLVTFLVVVLVLKKFAWDVILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIV 88 (173)
T ss_pred CCccCCcHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999997 66999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhC
Q psy2889 84 NLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIEL 163 (163)
Q Consensus 84 ~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i~~l 163 (163)
++|+.+++.+.++++++|+.++++++++++.+|+.+++++..+|+.+++++|+.+|+|+|++.+|+++|.++||+||+++
T Consensus 89 ~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~~~a~~el~~ei~~lA~~~a~kil~~~l~~~~~~~lid~~i~~~ 168 (173)
T PRK13460 89 AEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKGKALSQLQNQIVEMTITIASKVLEKQLKKEDYKAFIETELAKL 168 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999874
No 2
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=100.00 E-value=2.8e-37 Score=230.46 Aligned_cols=157 Identities=17% Similarity=0.278 Sum_probs=152.8
Q ss_pred cccCchH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 7 IQSADTG-AHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINL 85 (163)
Q Consensus 7 ~l~~~~~-~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~ 85 (163)
++++||+ ++|++|||+||+|+|++|+||||.++|++|++.|.+++++|+..+.+++..+.+|+..|.+|+.++..|+++
T Consensus 3 ~~~~~~~~~~~~~inflil~~lL~~fl~kpi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~ 82 (164)
T PRK14473 3 KLGINLGLLIAQLINFLLLIFLLRTFLYRPVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQ 82 (164)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577765 599999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhC
Q psy2889 86 TEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIEL 163 (163)
Q Consensus 86 A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i~~l 163 (163)
|+.+++..+++++++|+.++++++++++.+|+.+++++..+|+++++++|+.+|+|+|++++|+++|.++|++||+++
T Consensus 83 A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a~~~L~~~i~~la~~~a~kil~~~l~~~~~~~li~~~i~~~ 160 (164)
T PRK14473 83 AQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRMLSELKSQIADLVTLTASRVLGAELQARGHDALIAESLAAL 160 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999874
No 3
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=100.00 E-value=3.6e-37 Score=229.80 Aligned_cols=159 Identities=20% Similarity=0.312 Sum_probs=152.9
Q ss_pred cccccCch-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 5 YAIQSADT-GAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRI 83 (163)
Q Consensus 5 ~~~l~~~~-~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii 83 (163)
|+++.|+| ++||++|||+||+|+|++|+||||.++|++|++.|.+++++|+..+.+++....+|+..|.+|+.++.+|+
T Consensus 1 ~~~l~~~~~~~~~~~i~Flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii 80 (164)
T PRK14471 1 MDLLTPDFGLFFWQTILFLILLLLLAKFAWKPILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAIL 80 (164)
T ss_pred CCcccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667766 56999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-HHHHHHHHHHHHhh
Q psy2889 84 NLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKIT-IEVNSSLLNQLKIE 162 (163)
Q Consensus 84 ~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~-~~~~~~li~~~i~~ 162 (163)
.+|+.+++.++++++++|+.++++++++|+.+|+.++.++..+|+++++++|+.+|+|+|+++++ +++|+++||.||++
T Consensus 81 ~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l~~~i~~la~~~a~kil~~~l~~~~~~~~lid~~i~~ 160 (164)
T PRK14471 81 KEAREIKEKMIADAKEEAQVEGDKMIEQAKASIESEKNAAMAEIKNQVANLSVEIAEKVLRKELSNKEKQHKLVEKMLGD 160 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999996 57899999999987
Q ss_pred C
Q psy2889 163 L 163 (163)
Q Consensus 163 l 163 (163)
+
T Consensus 161 ~ 161 (164)
T PRK14471 161 V 161 (164)
T ss_pred c
Confidence 5
No 4
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=100.00 E-value=7.4e-37 Score=227.08 Aligned_cols=155 Identities=21% Similarity=0.290 Sum_probs=151.8
Q ss_pred cCch-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 9 SADT-GAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTE 87 (163)
Q Consensus 9 ~~~~-~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~ 87 (163)
++|| +++|++|||+||+|+|++|+||||.++|++|++.|.+++++|+..+.+++..+.+|+..|.+++.++.+|+++|+
T Consensus 2 ~~~~~~~~~~~inF~il~~iL~~f~~kpi~~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a~ 81 (159)
T PRK13461 2 EINIPTIIATIINFIILLLILKHFFFDKIKAVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYK 81 (159)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4675 679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhC
Q psy2889 88 KQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIEL 163 (163)
Q Consensus 88 ~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i~~l 163 (163)
.+++..+++++++|+.++++++++++.+|+.++.++..+|+.+++++|+.+|+|+|++++|+++|.++||.||+++
T Consensus 82 ~~a~~~~~~i~~~A~~ea~~~~~~a~~~i~~e~~~a~~~l~~ei~~lA~~~a~kil~~~~~~~~~~~li~~~i~~~ 157 (159)
T PRK13461 82 SKAENVYEEIVKEAHEEADLIIERAKLEAQREKEKAEYEIKNQAVDLAVLLSSKALEESIDESEHRRLIKDFISKV 157 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHHHHHHhHc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999875
No 5
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=100.00 E-value=1.3e-36 Score=229.08 Aligned_cols=158 Identities=23% Similarity=0.348 Sum_probs=154.0
Q ss_pred ccccCchH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 6 AIQSADTG-AHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRIN 84 (163)
Q Consensus 6 ~~l~~~~~-~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~ 84 (163)
.+++|||+ +||++|||+||+|+|++|+||||.++|++|++.|.+++++|+..+.+++..+.+|+.+|.+++.++.+|++
T Consensus 12 ~~~~~~~~~~~~~~i~Flil~~lL~~~l~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~ 91 (175)
T PRK14472 12 GLLSPNPGLIFWTAVTFVIVLLILKKIAWGPILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIR 91 (175)
T ss_pred CccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788875 59999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhC
Q psy2889 85 LTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIEL 163 (163)
Q Consensus 85 ~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i~~l 163 (163)
+|+.+++.+.++++++|+.+++++++.|+.+|+.+++++..++++++.++|+.+|+++|++.+|+++|.++|+.||++|
T Consensus 92 ~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e~~~a~~~l~~~i~~lA~~~a~kil~~~l~~~~~~~li~~~i~~l 170 (175)
T PRK14472 92 EGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQEKRRALDVLRNEVADLAVKGAEKIIRTSLDADKQKKVVDSMIQDL 170 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999875
No 6
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=100.00 E-value=1.1e-35 Score=219.83 Aligned_cols=155 Identities=34% Similarity=0.494 Sum_probs=153.2
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 9 SADTGAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEK 88 (163)
Q Consensus 9 ~~~~~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~ 88 (163)
+||+++||++|||+||+|+|++|+||||.++|++|++.|.+++++|+..+.+++..+.+|+.+|.+|+.++.+|+++|+.
T Consensus 2 ~~~~~~~~~~i~Flil~~il~~~~~~pi~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~~ 81 (156)
T PRK05759 2 NLNGTLIGQLIAFLILVWFIMKFVWPPIMKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAKK 81 (156)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhC
Q psy2889 89 QCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIEL 163 (163)
Q Consensus 89 ~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i~~l 163 (163)
+++..+++++.+|+.+++++++.++..|+.+++.+..+++.++.++|+.+|+|+|++.+|++.|.++|+.||++|
T Consensus 82 ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~l~~~~~~lA~~~a~k~l~~~~d~~~~~~~i~~~i~~~ 156 (156)
T PRK05759 82 RAAQIIEEAKAEAEAEAARIKAQAQAEIEQERKRAREELRKQVADLAVAGAEKILGRELDAAAQSDLIDKLIAEL 156 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999875
No 7
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=100.00 E-value=1.7e-35 Score=222.52 Aligned_cols=157 Identities=21% Similarity=0.253 Sum_probs=152.3
Q ss_pred cccCch-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 7 IQSADT-GAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINL 85 (163)
Q Consensus 7 ~l~~~~-~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~ 85 (163)
..++|| ++||++|||+||+|+|++|+||||.++|++|++.|.+++++|+..+.+++..+++|+.+|.+++.++.+|+++
T Consensus 13 ~~~~~~~t~~~~iInFliL~~lL~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~ 92 (173)
T PRK13453 13 AGGVEWGTVIVTVLTFIVLLALLKKFAWGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILED 92 (173)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346665 5799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhC
Q psy2889 86 TEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIEL 163 (163)
Q Consensus 86 A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i~~l 163 (163)
|+.+++.++++++++|+.++++++.+|+.+|+.++.++..+|++++.++|+.+++|+|++.+|+++|.++|+.||+++
T Consensus 93 a~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~ek~~a~~~l~~ei~~lA~~~a~kll~~~l~~~~~~~lI~~~i~~~ 170 (173)
T PRK13453 93 AKVQARQQQEQIIHEANVRANGMIETAQSEINSQKERAIADINNQVSELSVLIASKVLRKEISEQDQKALVDKYLKEA 170 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999874
No 8
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=100.00 E-value=1.4e-35 Score=228.26 Aligned_cols=160 Identities=24% Similarity=0.285 Sum_probs=154.6
Q ss_pred ccccccCchH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 4 IYAIQSADTG-AHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNR 82 (163)
Q Consensus 4 ~~~~l~~~~~-~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~i 82 (163)
+.+.+.|||+ ++|++|||+||+|+|++|+|||+.++|++|++.|.+++++|+..+.+++..+.+|+.+|.+|+.++.+|
T Consensus 40 ~~~~~~~~~~~~i~qlInFlIlv~lL~k~l~kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~I 119 (205)
T PRK06231 40 IINELFPNFWVFIAHLIAFSILLLLGIFLFWKPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEI 119 (205)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778765 599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhh
Q psy2889 83 INLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIE 162 (163)
Q Consensus 83 i~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i~~ 162 (163)
+++|+.+++.++++++++|+.++++++++|+.+|+.+++++..++++++.++|+.+|+++|++.+|+++|+++|++||++
T Consensus 120 i~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~~~Lk~ei~~lAv~iA~kiL~k~ld~~~~~~lI~~~i~~ 199 (205)
T PRK06231 120 IDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERRELKEQLQKESVELAMLAAEELIKKKVDREDDDKLVDEFIRE 199 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q psy2889 163 L 163 (163)
Q Consensus 163 l 163 (163)
|
T Consensus 200 l 200 (205)
T PRK06231 200 L 200 (205)
T ss_pred c
Confidence 5
No 9
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=100.00 E-value=2.1e-35 Score=220.99 Aligned_cols=158 Identities=16% Similarity=0.124 Sum_probs=152.9
Q ss_pred ccccCchHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 6 AIQSADTGAHSHGIRRTIKCCFT--KKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRI 83 (163)
Q Consensus 6 ~~l~~~~~~~~~~i~Flil~~~l--~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii 83 (163)
.+++|+.++||++|||+|++++| .+|+||||.++|++|++.|.+++++|+..+.+++..+.+|+..|.+|+.++.+|+
T Consensus 3 ~~~~~~~~~~w~~i~f~il~~iL~~~k~l~~pi~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii 82 (167)
T PRK14475 3 SFFNLSNPEFWVGAGLLIFFGILIALKVLPKALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAML 82 (167)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888999999999999977 6889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhC
Q psy2889 84 NLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIEL 163 (163)
Q Consensus 84 ~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i~~l 163 (163)
.+|+.+++.+.+++++.|+.+++++++.|+.+|+.++.++..+++++++++|+.+|+|+|++++|+++|.++||+||+++
T Consensus 83 ~~A~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~e~~~a~~el~~e~~~lAv~~A~kil~~~l~~~~~~~lid~~i~~~ 162 (167)
T PRK14475 83 AAAKADARRMEAEAKEKLEEQIKRRAEMAERKIAQAEAQAAADVKAAAVDLAAQAAETVLAARLAGAKSDPLVDAAIGQM 162 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999764
No 10
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=100.00 E-value=5.4e-35 Score=220.04 Aligned_cols=157 Identities=18% Similarity=0.167 Sum_probs=152.9
Q ss_pred cccCchHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 7 IQSADTGA-HSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINL 85 (163)
Q Consensus 7 ~l~~~~~~-~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~ 85 (163)
.++|||+. +|++|||+||+|+|++|+|+||.++|++|++.|.++++.|+..+.+++..+.+|+.+|.+++.++.+|+.+
T Consensus 14 ~~~~~~~~~~~~iinflIl~~lL~~fl~kpI~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~ 93 (174)
T PRK07352 14 GFGLNLNLLETNLINLAIVIGLLYYFGRGFLGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRAD 93 (174)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778775 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhC
Q psy2889 86 TEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIEL 163 (163)
Q Consensus 86 A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i~~l 163 (163)
|+.+++.++++++++|+.++++++.+++..|+.++.++..+|+.++.++|+++|+++|++++|+++|.++|+.||++|
T Consensus 94 a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~qi~~la~~~A~kil~~~l~~~~~~~li~~~i~~l 171 (174)
T PRK07352 94 AKARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQERVIAQLRREAAELAIAKAESQLPGRLDEDAQQRLIDRSIANL 171 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999875
No 11
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=100.00 E-value=1.2e-34 Score=219.97 Aligned_cols=158 Identities=16% Similarity=0.080 Sum_probs=153.1
Q ss_pred ccccCchHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 6 AIQSADTGA-HSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRIN 84 (163)
Q Consensus 6 ~~l~~~~~~-~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~ 84 (163)
+++++|+++ ++++|||+||+|+|+||+|+||.++|++|++.|.+++++|+..+.+++..+.+|+.+|.+|+.++.+|++
T Consensus 18 ~~f~~n~~~~~~~~Inflill~lL~~fl~kPI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~ 97 (184)
T CHL00019 18 GSFGFNTDILETNLINLSVVLGVLIYFGKGVLSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRV 97 (184)
T ss_pred CccCCcchHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777776 6899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhC
Q psy2889 85 LTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIEL 163 (163)
Q Consensus 85 ~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i~~l 163 (163)
+|+.+++..++.++++|+.++++++++|+..|+.+++++..+++.++.++|+.+|+|+|++.+|+++|.++|+.||++|
T Consensus 98 ~A~~~ae~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~l~~ei~~lav~~A~kil~~~ld~~~~~~lid~~i~~l 176 (184)
T CHL00019 98 NGYSEIEREKENLINQAKEDLERLENYKNETIRFEQQRAINQVRQQVFQLALQRALGTLNSCLNNELHLRTINANIGLL 176 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999874
No 12
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=100.00 E-value=2.5e-34 Score=218.19 Aligned_cols=158 Identities=15% Similarity=0.140 Sum_probs=152.7
Q ss_pred ccccCchHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 6 AIQSADTGAHSHGIRRTIKCCFTKKFIWP-PLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRIN 84 (163)
Q Consensus 6 ~~l~~~~~~~~~~i~Flil~~~l~~~l~~-pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~ 84 (163)
++++||+|.||++|||+||+|+|+||+|| ||.++|++|++.|.+++++|++.+.+++..+.+|+.+|.+++.++.+|++
T Consensus 21 ~~~~~~~t~~~~~inflil~~iL~~f~~~~~v~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~ 100 (184)
T PRK13455 21 PFFSLSNTDFVVTLAFLLFIGILVYFKVPGMIGGMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVA 100 (184)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999765 68999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhC
Q psy2889 85 LTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIEL 163 (163)
Q Consensus 85 ~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i~~l 163 (163)
+|+.+++.+.++++++++.++++++++++.+|+.+++++..+++.+++++|+.+|+++|++++|+++|.++|+.||++|
T Consensus 101 ~A~~~a~~~~e~~~~~a~~ea~~~~~~A~~~I~~ek~~a~~~l~~~i~~lA~~~a~kil~~~l~~~~~~~lid~~i~~l 179 (184)
T PRK13455 101 AAKDEAQAAAEQAKADLEASIARRLAAAEDQIASAEAAAVKAVRDRAVSVAVAAAADVIAKQMTAADANALIDEAIKEV 179 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999874
No 13
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=100.00 E-value=5.4e-34 Score=225.16 Aligned_cols=155 Identities=18% Similarity=0.249 Sum_probs=151.3
Q ss_pred cCch-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 9 SADT-GAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTE 87 (163)
Q Consensus 9 ~~~~-~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~ 87 (163)
++|| |++|++|||+||+|+|++|+||||.++|++|++.|.+.+++|+..+.+++..+.+|+.++.+|+.++.+|+++|+
T Consensus 2 ~id~~t~~~qiInFlil~~lL~kfl~kPi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~ 81 (246)
T TIGR03321 2 LIDWFTVIAQLINFLILVWLLKRFLYRPILDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAK 81 (246)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4564 679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhC
Q psy2889 88 KQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIEL 163 (163)
Q Consensus 88 ~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i~~l 163 (163)
.+|+.++++++++|+.++++++++++..|+.++.++..+++.++.++|+.+|+|+|++.+|++.|+++||.||++|
T Consensus 82 ~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~~~l~~ei~~la~~~A~kil~~~~d~~~~~~lid~~i~~l 157 (246)
T TIGR03321 82 EEAQAERQRLLDEAREEADEIREKWQEALRREQAALSDELRRRTGAEVFAIARKVLTDLADTDLEERMVDVFVQRL 157 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999864
No 14
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=100.00 E-value=1.2e-33 Score=223.28 Aligned_cols=154 Identities=11% Similarity=0.167 Sum_probs=150.6
Q ss_pred Cc-hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 10 AD-TGAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEK 88 (163)
Q Consensus 10 ~~-~~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~ 88 (163)
+| +|++|++|||+||+|+|++|+|+||.++|++|+++|.+++++|++.+.+|+..+.+|+.++.+++.++.+|+++|+.
T Consensus 3 id~~t~~~qiInFlILv~lL~~fl~kPi~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~ 82 (250)
T PRK14474 3 IDWFTVVAQIINFLILVYLLRRFLYKPIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQE 82 (250)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 56799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhC
Q psy2889 89 QCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIEL 163 (163)
Q Consensus 89 ~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i~~l 163 (163)
+++.++++++++|+.++++++.+++..|+.+++++..+++.++.++|+.+|+|+|++.+|++.|.++|+.|+++|
T Consensus 83 eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~L~~~v~~la~~~A~kiL~~~~d~~~~~~lid~~i~~l 157 (250)
T PRK14474 83 AADEQRQHLLNEAREDVATARDEWLEQLEREKQEFFKALQQQTGQQMVKIIRAALADLANATLEQQIVGIFIARL 157 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999864
No 15
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=100.00 E-value=2.3e-33 Score=208.63 Aligned_cols=155 Identities=32% Similarity=0.387 Sum_probs=151.2
Q ss_pred cCchH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 9 SADTG-AHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTE 87 (163)
Q Consensus 9 ~~~~~-~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~ 87 (163)
++++| +||++++|+||+|++++|+|||+.++|++|+++|.+++++|+..+.+++.++++|++.|.+|+.++.+|++.|+
T Consensus 3 ~~~~~~~~~~~i~F~ill~ll~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~ 82 (161)
T COG0711 3 NFNDTNILWQLIAFVILLWLLKKFVWKPILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAK 82 (161)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhC
Q psy2889 88 KQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIEL 163 (163)
Q Consensus 88 ~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i~~l 163 (163)
.++..+.+++..+++.++++++..+..+|+.++.++..+|+.++.++|+.++++++++.+|...+..+++.|+.+|
T Consensus 83 ~~a~~~~~e~~~~a~~e~~r~~~~a~~~I~~e~~~a~~~l~~~~~~la~~~aekll~~~~~~~~~~~lid~~~~~l 158 (161)
T COG0711 83 KEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKERALEELRAEVAELAVAIAEKLLGKKVDEAAQKDLIDAFIAEL 158 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999875
No 16
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=100.00 E-value=1.7e-33 Score=206.46 Aligned_cols=147 Identities=34% Similarity=0.497 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 17 HGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEK 96 (163)
Q Consensus 17 ~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~ 96 (163)
++|||+||+|+|++|+||||.++|++|++.|.+++++|+..+.+++..+.+|+..|.+|+.++.+|+++|+.+++.+.++
T Consensus 1 q~i~Flil~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A~~ea~~i~~~a~~~a~~~~~~ 80 (147)
T TIGR01144 1 QLISFILLVWFCMKYVWPPLAKAIETRQKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIENANKRGSEILEE 80 (147)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhC
Q psy2889 97 SKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIEL 163 (163)
Q Consensus 97 ~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i~~l 163 (163)
++++|+.++++++++++.+|+.++.++..+++.++.++|+.+++++|++.+|+++|.++||.||++|
T Consensus 81 ~~~~a~~e~~~~~~~a~~~i~~e~~~a~~~l~~~~~~lA~~~a~kll~~~l~~~~~~~lid~~i~~~ 147 (147)
T TIGR01144 81 AKAEAREEREKIKAQARAEIEAEKEQAREELRKQVADLSVLGAEKIIERNIDKQAQKDLIDKLVAEL 147 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999875
No 17
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=100.00 E-value=8.7e-33 Score=204.69 Aligned_cols=140 Identities=22% Similarity=0.271 Sum_probs=137.0
Q ss_pred ccccCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 6 AIQSADTGAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINL 85 (163)
Q Consensus 6 ~~l~~~~~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~ 85 (163)
+++++|+|++|+++||+||+|+|++|+|||+.++|++|++.|.+++++|++.+.+++..+.+|+.+|.+|+.++.+|+++
T Consensus 17 ~~~~~n~t~~~~~inFliL~~lL~k~l~~Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~ 96 (156)
T CHL00118 17 GLFDFNATLPLMALQFLLLMVLLNIILYKPLLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQ 96 (156)
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2889 86 TEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNN 145 (163)
Q Consensus 86 A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~ 145 (163)
|+.+++...++++++|+.++++++++++.+|+.+++++..+|+.++.++|..+++|++|+
T Consensus 97 A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l~~~v~~lA~~ia~kil~~ 156 (156)
T CHL00118 97 SQKEAKEIVENELKQAQKYIDSLLNEATKQLEAQKEKALKSLEEQVDTLSDQIEEKLLIK 156 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999974
No 18
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=100.00 E-value=1.2e-32 Score=200.44 Aligned_cols=140 Identities=18% Similarity=0.200 Sum_probs=137.2
Q ss_pred cccCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 7 IQSADTGAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLT 86 (163)
Q Consensus 7 ~l~~~~~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A 86 (163)
++++|+|++|++|||+||+|+|++|+||||.++|++|++.|.+++++|+..+.+++..+.+|+..|.+++.++.+|++++
T Consensus 1 ~~~~~~t~~~~~i~flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a 80 (140)
T PRK07353 1 LFDFDATLPLMAVQFVLLTFILNALFYKPVGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEA 80 (140)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2889 87 EKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNK 146 (163)
Q Consensus 87 ~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~ 146 (163)
+.+++...+.++++|+.++++++++++.+|+.+++++..+++.++.++|+++++|+||+.
T Consensus 81 ~~~a~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~l~~~v~~la~~~a~kll~~~ 140 (140)
T PRK07353 81 EAEADKLAAEALAEAQAEAQASKEKARREIEQQKQAALAQLEQQVDALSRQILEKLLAAK 140 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 999999999999999999999999999999999999999999999999999999999863
No 19
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=100.00 E-value=2.7e-32 Score=202.55 Aligned_cols=150 Identities=19% Similarity=0.190 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 14 AHSHGIRRTIKCCFTKKFIW-PPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKL 92 (163)
Q Consensus 14 ~~~~~i~Flil~~~l~~~l~-~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~ 92 (163)
+||++|+|++|+|+|++|+| +||.++|++|++.|.+++++|+..+.+++..+.+|+.+|.+++.++.+|+++|+.+++.
T Consensus 4 ~~w~~i~f~i~l~~l~~~~~~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A~~ea~~ii~~A~~~a~~ 83 (159)
T PRK09173 4 TFWAFVGLVLFLALVVYLKVPGMIARSLDARADRIKNELAEARRLREEAQQLLAEYQRKRKEAEKEAADIVAAAEREAEA 83 (159)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999966 79999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhC
Q psy2889 93 IIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIEL 163 (163)
Q Consensus 93 ~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i~~l 163 (163)
+.+++..+|+.++++++..++.+|+.++.++..+++.+++++|+.+|+|+|++++|+++|.++|++||+++
T Consensus 84 ~~~~a~~~a~~~~~~~~~~a~~~I~~ek~~a~~el~~~~~~lA~~~A~kil~~~l~~~~~~~li~~~i~~~ 154 (159)
T PRK09173 84 LTAEAKRKTEEYVARRNKLAEQKIAQAETDAINAVRSSAVDLAIAAAEKLLAEKVDAKAASELFKDALAQV 154 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999764
No 20
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=100.00 E-value=3.5e-32 Score=209.01 Aligned_cols=155 Identities=13% Similarity=0.118 Sum_probs=148.5
Q ss_pred ccccccCc---hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 4 IYAIQSAD---TGAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENK 80 (163)
Q Consensus 4 ~~~~l~~~---~~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~ 80 (163)
.+|.++++ +++||++|+|+||||+|++|+||||.++|++|+++|.+++++|+..+.+++..+.+|+..|.+|+.++.
T Consensus 43 ~~p~~~~~~~~~~l~w~~I~FliL~~lL~k~~~~pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~ 122 (204)
T PRK09174 43 VFPPFDSTHYASQLLWLAITFGLFYLFMSRVILPRIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAH 122 (204)
T ss_pred CCCCCcchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47887775 467999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHH
Q psy2889 81 NRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQ 158 (163)
Q Consensus 81 ~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~ 158 (163)
+|+++|+.+++...+.++.+++.++++++++++.+|+.++.+++.+++..+.++|..+++|+||..+|+++-.+.|+.
T Consensus 123 ~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I~~ek~~A~~el~~~a~e~A~~I~~Kllg~~~dk~~~~~av~~ 200 (204)
T PRK09174 123 SIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARIAAIKAKAMADVGSIAEETAAAIVEQLIGGTADKASVAAAVKA 200 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998887777764
No 21
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=100.00 E-value=6.8e-32 Score=198.26 Aligned_cols=137 Identities=15% Similarity=0.136 Sum_probs=132.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 12 TGAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCK 91 (163)
Q Consensus 12 ~~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~ 91 (163)
-++||++|+|+||+|+|++|+||||.++|++|.+.|.+++++|++.+++++.++++|+..|.+|+.++.+|+++|+.+++
T Consensus 5 ~~~fwq~I~FlIll~ll~kfawkPI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~ 84 (154)
T PRK06568 5 DESFWLAVSFVIFVYLIYRPAKKAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESNEVTK 84 (154)
T ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcC
Q psy2889 92 LIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNN-KIT 148 (163)
Q Consensus 92 ~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~-~i~ 148 (163)
.+.++++.+|+.+++++++.|+.+|+.+++.|..+++++++++|+.+|+|.... .++
T Consensus 85 ~~~~ea~~eA~~ea~r~~~~A~~~Ie~Ek~~Al~elr~eva~Lav~iAsk~~~~~~~~ 142 (154)
T PRK06568 85 KIIQEKTKEIEEFLEHKKSDAIQLIQNQKSTASKELQDEFCDEVIKLVSEYFQSVKLS 142 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999999999875 444
No 22
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=100.00 E-value=1.8e-31 Score=226.04 Aligned_cols=152 Identities=14% Similarity=0.206 Sum_probs=148.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 12 TGAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCK 91 (163)
Q Consensus 12 ~~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~ 91 (163)
|||+|++|||+||+|+|+||+||||.++|++|++.|.+++++|++.+.+++...++|++.+.+++.++++|+++|+.+++
T Consensus 2 ~t~i~qlInFlIl~~lL~kfl~~Pi~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~ 81 (445)
T PRK13428 2 STFIGQLIGFAVIVFLVWRFVVPPVRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAE 81 (445)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CHHHHHHHHHHHHhhC
Q psy2889 92 LIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKI-TIEVNSSLLNQLKIEL 163 (163)
Q Consensus 92 ~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i-~~~~~~~li~~~i~~l 163 (163)
.++++++++|+.++++++++++.+|+.+++++..+++.++.++|+..|+|+|++++ |++.|+++|+.||++|
T Consensus 82 ~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~~a~~elr~ei~~lAv~~A~kil~~~l~d~~~~~~lId~~i~~l 154 (445)
T PRK13428 82 RIAEQLRAQADAEAERIKVQGARQVQLLRAQLTRQLRLELGHESVRQAGELVRNHVADPAQQSATVDRFLDEL 154 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999 5788999999999875
No 23
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=100.00 E-value=1.3e-30 Score=197.30 Aligned_cols=156 Identities=15% Similarity=0.065 Sum_probs=146.9
Q ss_pred ccccccCc---hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 4 IYAIQSAD---TGAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENK 80 (163)
Q Consensus 4 ~~~~l~~~---~~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~ 80 (163)
-||.++++ +++||++|+|+||||+|+||+||||.++|++|++.|.+++++|+..+.+++.+..+|+..|.+++.++.
T Consensus 21 gmp~ld~~t~~~q~~~~lI~F~iL~~ll~k~l~~PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~ 100 (181)
T PRK13454 21 GMPQLDFSTFPNQIFWLLVTLVAIYFVLTRVALPRIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQ 100 (181)
T ss_pred CCCCCcHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677776 367999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHH
Q psy2889 81 NRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLK 160 (163)
Q Consensus 81 ~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i 160 (163)
+|+++|+.+++...++++++|+.++++++..++.+|+.++.++..+|+..+.++|..++.|+ +.++|++.-.+.|++.+
T Consensus 101 ~ii~~A~~ea~~~~~~~~~~A~~e~~~~~aea~~~I~~~k~~a~~~l~~~a~~lA~~i~~kL-~~~~~~~~~~~~v~~~~ 179 (181)
T PRK13454 101 RIVAETRAEIQAELDVAIAKADAEIAAKAAESEKRIAEIRAGALESVEEVAKDTAEALVAAL-GGKADAAAVDAAVAQRM 179 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999 45778887777777654
No 24
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=99.97 E-value=1.2e-28 Score=179.63 Aligned_cols=136 Identities=15% Similarity=0.146 Sum_probs=132.4
Q ss_pred cccCchH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 7 IQSADTG-AHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINL 85 (163)
Q Consensus 7 ~l~~~~~-~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~ 85 (163)
++++||+ ++|++|||+||+|+|++|+||||.++|++|++.|.++++.|+..+.+++...++|+..+.+|+.++..++++
T Consensus 2 mi~l~~~~~~~qli~Flil~~~l~kfl~kPi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~~~ 81 (141)
T PRK08476 2 MLDVNPYLMLATFVVFLLLIVILNSWLYKPLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQK 81 (141)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678865 699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 86 TEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKI 142 (163)
Q Consensus 86 A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kl 142 (163)
+..+|....++++++|+.++++..+.+..+++.++.++..+|+.++.+++..+..|+
T Consensus 82 a~~~A~~ea~~~~~~A~~~~~~~~~~a~~~l~~e~~~~~~~l~~qv~~~~~~~~~~~ 138 (141)
T PRK08476 82 AIAKAKEEAEKKIEAKKAELESKYEAFAKQLANQKQELKEQLLSQMPEFKEALNAKL 138 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999887
No 25
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=99.97 E-value=7e-30 Score=183.52 Aligned_cols=132 Identities=30% Similarity=0.353 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 13 GAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKL 92 (163)
Q Consensus 13 ~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~ 92 (163)
|+||++|||+||+|+|++|+|||+.++|++|++.|.+.+++|+..+.+++....+|+..+.+++.++.+++++|+.+++.
T Consensus 1 tl~~~~i~Flil~~~l~~~~~~pi~~~l~~R~~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~ 80 (132)
T PF00430_consen 1 TLFWQLINFLILFFLLNKFLYKPIKKFLDERKAKIQSELEEAEELKEEAEQLLAEYEEKLAEAREEAQEIIEEAKEEAEK 80 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHCS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2889 93 IIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILN 144 (163)
Q Consensus 93 ~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~ 144 (163)
+.++++.++++++++++..++.+|+.+++.+..+++.+++++|+++++|+|+
T Consensus 81 ~~~~~~~ea~~~~~~~~~~a~~~i~~e~~~a~~~l~~~~~~la~~~a~kll~ 132 (132)
T PF00430_consen 81 EKEEILAEAEKEAERIIEQAEAEIEQEKEKAKKELRQEIVDLAVDIAEKLLN 132 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999985
No 26
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=99.96 E-value=8.5e-28 Score=179.76 Aligned_cols=146 Identities=13% Similarity=0.142 Sum_probs=133.3
Q ss_pred cccccCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 5 YAIQSADTGAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRIN 84 (163)
Q Consensus 5 ~~~l~~~~~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~ 84 (163)
++.+++ +++||++|||+||+|+|++|+||||.++|++|++.|.++++.|++.+.+++..+.+|++.|.+|+.++.+|++
T Consensus 17 ~~~~~~-~~~~~~~inflil~~lL~~fl~kPi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~ 95 (167)
T PRK08475 17 LGATEQ-YDIIERTINFLIFVGILWYFAAKPLKNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVE 95 (167)
T ss_pred cCCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 7789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHH
Q psy2889 85 LTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSL 155 (163)
Q Consensus 85 ~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~l 155 (163)
+|+.+++.++++++++|+.+++++++.++..|+.+++++..+++.++++-+.+- +++ .++++.--.+
T Consensus 96 ~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ie~Ek~~a~~elk~eii~~~~~~--~~~--~l~~~~y~~~ 162 (167)
T PRK08475 96 TAKKEAYILTQKIEKQTKDDIENLIKSFEELMEFEVRKMEREVVEEVLNELFES--KKV--SLNQQEYVNI 162 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhc--CCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988887 553 3444433333
No 27
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=99.95 E-value=1.3e-25 Score=164.63 Aligned_cols=146 Identities=18% Similarity=0.132 Sum_probs=138.4
Q ss_pred cccccCch---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 5 YAIQSADT---GAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKN 81 (163)
Q Consensus 5 ~~~l~~~~---~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ 81 (163)
||.+++.+ ++||++|||+|||+++++|+||||.++|++|++.|.++++.|+..+.+++.+.++|++.|.+|+.++++
T Consensus 1 mPQfd~~~~~sqifw~iI~FlILy~ll~kf~~ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~ 80 (155)
T PRK06569 1 MPQFDIATYYSQIFWLIVTFGLLYIFVYKFITPKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDR 80 (155)
T ss_pred CCCCchhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666653 459999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHH
Q psy2889 82 RINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIE 150 (163)
Q Consensus 82 ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~ 150 (163)
|..+++..+.+.....+....++....+++--.++....++.+.+..+++.++++++++|+.|...|-+
T Consensus 81 I~~e~~~~~~a~~~~~~~~~ea~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~k~~~~~~~~~ 149 (155)
T PRK06569 81 LKKEKIDSLESEFLIKKKNLEQDLKNSINQNIEDINLAAKQFRTNKSEAIIKLAVNIIEKIAGTKADMN 149 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccccHH
Confidence 999999999999999999999999999999999999999999999999999999999999999887754
No 28
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=99.22 E-value=6.5e-10 Score=74.27 Aligned_cols=82 Identities=23% Similarity=0.316 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 60 KVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSA 139 (163)
Q Consensus 60 ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a 139 (163)
.......+|+..|.+|+.++..|+.+|+.+++.++++++.+|+.++.+++..|+.+++.++..++.+++.++.+|++..+
T Consensus 3 ~ik~ae~~~~~~l~~A~~ea~~Ii~~A~~~A~~~~~~a~~~A~~ea~~ii~~Ak~ei~~e~~~a~~e~k~ev~~L~~~~~ 82 (85)
T TIGR02926 3 EIKKAEEDAEELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEKEAEKIREEGEKEIEAMKSKAK 82 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HH
Q psy2889 140 EK 141 (163)
Q Consensus 140 ~k 141 (163)
++
T Consensus 83 ~~ 84 (85)
T TIGR02926 83 EK 84 (85)
T ss_pred hc
Confidence 65
No 29
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=99.19 E-value=5.8e-10 Score=88.70 Aligned_cols=115 Identities=18% Similarity=0.221 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----------
Q psy2889 49 DILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKS---KKKATEEANIILYNARVE---------- 115 (163)
Q Consensus 49 ~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~---~~~A~~e~~~~~~~a~~~---------- 115 (163)
..+..+...+.++.....+++..|.+|+.++.+|+.+|+.+++.+++++ .++++.+.+++++.|+++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e~A~~eGy~eG~~~G~ 102 (255)
T TIGR03825 23 RQVTDVPETEQELADEEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQEAKQEGYEAGFQAGE 102 (255)
T ss_pred eeeccCcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777778888899999999999999999999999999999988 588888888888888877
Q ss_pred -----------------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhc--CHHHHHHHHHHHHhhC
Q psy2889 116 -----------------IIKQI---NIARENLHNEIVNLAIKSAEKILNNKI--TIEVNSSLLNQLKIEL 163 (163)
Q Consensus 116 -----------------i~~e~---~~a~~~l~~~i~~la~~~a~kll~~~i--~~~~~~~li~~~i~~l 163 (163)
++..+ .....+++.++.+|++.+|+|+++..+ +++....+|+.++..+
T Consensus 103 ~e~~~~~~~~i~~a~~i~~~a~~~~~~~l~~~e~el~~La~~iAeKIi~~el~~~~e~i~~lv~~al~~l 172 (255)
T TIGR03825 103 SEALSIYQSTIDEANAIVEEAKDDYEEKIESAQPLIIELACALAEKVIGVSLAEDKNAFQALVRQVLSEV 172 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Confidence 44443 555778899999999999999999998 5777899999998764
No 30
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=99.19 E-value=2.4e-09 Score=74.04 Aligned_cols=85 Identities=25% Similarity=0.262 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 58 KEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIK 137 (163)
Q Consensus 58 ~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~ 137 (163)
-........+|+..|.+|+.++..|+.+|+.++..++++++.+|+.++.++++.|+.+++.++..++.+++.++.+|+..
T Consensus 5 i~~ik~aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~~elk~eia~L~~~ 84 (103)
T PRK08404 5 IKEIVKAEKEAEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIEELKVK 84 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677899999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHH
Q psy2889 138 SAEKI 142 (163)
Q Consensus 138 ~a~kl 142 (163)
.-.++
T Consensus 85 a~~k~ 89 (103)
T PRK08404 85 AEENF 89 (103)
T ss_pred HHHHH
Confidence 66654
No 31
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=99.11 E-value=8e-08 Score=74.10 Aligned_cols=146 Identities=9% Similarity=0.067 Sum_probs=110.8
Q ss_pred cCchHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 9 SADTGA---HSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINL 85 (163)
Q Consensus 9 ~~~~~~---~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~ 85 (163)
.|.+.+ .|+++.++|.|++|+.++.+-+..-+ .+-+.+.-+.......+++..+.+.+.. ..+.++.+.+
T Consensus 44 ~p~~~~~~~~~~l~w~~I~FliL~~lL~k~~~~pI---~~vLe~R~~~I~~~L~~Ae~~k~eAe~~----~~~ye~~L~~ 116 (204)
T PRK09174 44 FPPFDSTHYASQLLWLAITFGLFYLFMSRVILPRI---GGIIETRRDRIAQDLDQAARLKQEADAA----VAAYEQELAQ 116 (204)
T ss_pred CCCCcchhccHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 566666 56888888989999888777665544 2334444455555566666666655544 4567788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHH
Q psy2889 86 TEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIA-------RENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQ 158 (163)
Q Consensus 86 A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a-------~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~ 158 (163)
|+.++..++++++.+++.+.+.++..++.+++....++ +.....++..++.+++.+++.+-++.+.+..-+..
T Consensus 117 Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I~~ek~~A~~el~~~a~e~A~~I~~Kllg~~~dk~~~~~ 196 (204)
T PRK09174 117 ARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARIAAIKAKAMADVGSIAEETAAAIVEQLIGGTADKASVAA 196 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCHHHHHH
Confidence 99999999999999999999999999887766555554 45566778999999999999999998888888877
Q ss_pred HHh
Q psy2889 159 LKI 161 (163)
Q Consensus 159 ~i~ 161 (163)
.++
T Consensus 197 av~ 199 (204)
T PRK09174 197 AVK 199 (204)
T ss_pred HHH
Confidence 765
No 32
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=99.10 E-value=1.1e-07 Score=69.37 Aligned_cols=121 Identities=17% Similarity=0.127 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 15 HSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLII 94 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~ 94 (163)
+|+++.-+|.|++|+.++.+-+-+-+ .+.+.+.-+........++.. +......+.+.+.++.+|+.+|..++
T Consensus 7 ~~~~~~qli~Flil~~~l~kfl~kPi---~~~l~~R~~~I~~~l~~A~~~----~~ea~~~~~e~e~~l~~Ar~eA~~~~ 79 (141)
T PRK08476 7 PYLMLATFVVFLLLIVILNSWLYKPL---LKFMDNRNASIKNDLEKVKTN----SSDVSEIEHEIETILKNAREEANKIR 79 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666777777777777766665 344555555555555555544 45567778899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 95 EKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKI 142 (163)
Q Consensus 95 ~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kl 142 (163)
++++.+|+.++++++++|+.+++.++.++..+++.+..+++.++...+
T Consensus 80 ~~a~~~A~~ea~~~~~~A~~~~~~~~~~a~~~l~~e~~~~~~~l~~qv 127 (141)
T PRK08476 80 QKAIAKAKEEAEKKIEAKKAELESKYEAFAKQLANQKQELKEQLLSQM 127 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999999999999999888777
No 33
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=99.03 E-value=2.7e-07 Score=69.35 Aligned_cols=143 Identities=12% Similarity=0.059 Sum_probs=104.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q psy2889 10 ADTGAHSHGIRRTIKCCFTKKFIWPPLI---KALDDRKKKIADILAAANSEKEKV----SYDRKRIQKELIATHEENKNR 82 (163)
Q Consensus 10 ~~~~~~~~~i~Flil~~~l~~~l~~pi~---~~l~~R~~~I~~~l~~A~~~~~ea----~~~~~e~e~~L~~a~~ea~~i 82 (163)
+-|+++|.+|.|++|++++++++-+-+. ..+.+--+.......+|+....++ .....+....+.+++.++..+
T Consensus 22 ~~~~iinflIl~~lL~~fl~kpI~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~ 101 (174)
T PRK07352 22 LETNLINLAIVIGLLYYFGRGFLGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAI 101 (174)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999875553 344444444445555555555444 556667778888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHH
Q psy2889 83 INLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQL 159 (163)
Q Consensus 83 i~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~ 159 (163)
.++...++....+.++..|+.+++.....+..++.. ++-+.+.+.|..+..+-++.......-.++++++
T Consensus 102 ~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~-------qi~~la~~~A~kil~~~l~~~~~~~li~~~i~~l 171 (174)
T PRK07352 102 RAEIEKQAIEDMARLKQTAAADLSAEQERVIAQLRR-------EAAELAIAKAESQLPGRLDEDAQQRLIDRSIANL 171 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHcCHHHHHHHHHHHHHhh
Confidence 999999999999999999998888888777766654 4455567777777777777666666666666543
No 34
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=98.94 E-value=7.9e-07 Score=67.36 Aligned_cols=137 Identities=7% Similarity=0.089 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 16 SHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIE 95 (163)
Q Consensus 16 ~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~ 95 (163)
.++++|+|.|++|++++++-+..-+ ...+.+.-+.......+++....+ ......+.+..+.+|+.++..+++
T Consensus 32 ~q~~~~lI~F~iL~~ll~k~l~~PI---~~~l~~R~~~I~~~l~~Ae~~~~e----A~~~~~eye~~L~~Ar~EA~~ii~ 104 (181)
T PRK13454 32 NQIFWLLVTLVAIYFVLTRVALPRI---GAVLAERQGTITNDLAAAEELKQK----AVEAEKAYNKALADARAEAQRIVA 104 (181)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999998877766544 233334444444444445444444 445566888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHH
Q psy2889 96 KSKKKATEEANIILYNARVEIIKQINIA-------RENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLK 160 (163)
Q Consensus 96 ~~~~~A~~e~~~~~~~a~~~i~~e~~~a-------~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i 160 (163)
++..++++..+.++..++.++......+ +.+...++.+++.++|.+++.+-.+.- ....+...+
T Consensus 105 ~A~~ea~~~~~~~~~~A~~e~~~~~aea~~~I~~~k~~a~~~l~~~a~~lA~~i~~kL~~~~-~~~~~~~~v 175 (181)
T PRK13454 105 ETRAEIQAELDVAIAKADAEIAAKAAESEKRIAEIRAGALESVEEVAKDTAEALVAALGGKA-DAAAVDAAV 175 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHH
Confidence 9999999999999999988877766664 445566788889999999988885544 444444443
No 35
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=98.89 E-value=3.2e-06 Score=62.56 Aligned_cols=146 Identities=12% Similarity=0.035 Sum_probs=100.9
Q ss_pred CchHHHHHHHHHHHHHH-HHH-HHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 10 ADTGAHSHGIRRTIKCC-FTK-KFIW-------PPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENK 80 (163)
Q Consensus 10 ~~~~~~~~~i~Flil~~-~l~-~~l~-------~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~ 80 (163)
+.++.++.++.|+++++ +.+ +.+- ..|.+-+++=...-...-..-.....+......+....+..++.++.
T Consensus 3 ~~~w~~i~f~i~l~~l~~~~~~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A~~ea~~ii~~A~~~a~ 82 (159)
T PRK09173 3 ATFWAFVGLVLFLALVVYLKVPGMIARSLDARADRIKNELAEARRLREEAQQLLAEYQRKRKEAEKEAADIVAAAEREAE 82 (159)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555543 323 4443 23444444444444444444445555666677788889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHH
Q psy2889 81 NRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLK 160 (163)
Q Consensus 81 ~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i 160 (163)
.++++++.++....+.+...|+.+++.....+..++..+.. +-+...|..+.++-+........-.++++++-
T Consensus 83 ~~~~~a~~~a~~~~~~~~~~a~~~I~~ek~~a~~el~~~~~-------~lA~~~A~kil~~~l~~~~~~~li~~~i~~~~ 155 (159)
T PRK09173 83 ALTAEAKRKTEEYVARRNKLAEQKIAQAETDAINAVRSSAV-------DLAIAAAEKLLAEKVDAKAASELFKDALAQVK 155 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988888777665544 44577777777777777777777777777654
Q ss_pred hh
Q psy2889 161 IE 162 (163)
Q Consensus 161 ~~ 162 (163)
..
T Consensus 156 ~~ 157 (159)
T PRK09173 156 TR 157 (159)
T ss_pred hh
Confidence 43
No 36
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=98.79 E-value=7.6e-06 Score=61.54 Aligned_cols=59 Identities=12% Similarity=-0.050 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 60 KVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIK 118 (163)
Q Consensus 60 ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~ 118 (163)
+......+....+.+++.++..+.++...+|....+.+++.|+.+++.....+..++..
T Consensus 78 ~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e~~~a~~~l~~ 136 (175)
T PRK14472 78 LLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQEKRRALDVLRN 136 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555555555555555555555555555544444433
No 37
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=98.78 E-value=1.1e-05 Score=60.34 Aligned_cols=148 Identities=10% Similarity=0.011 Sum_probs=100.5
Q ss_pred cccccCc-hHHHHHHHHHHHH--HHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 5 YAIQSAD-TGAHSHGIRRTIK--CCFTKKFIWPP-------LIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIA 74 (163)
Q Consensus 5 ~~~l~~~-~~~~~~~i~Flil--~~~l~~~l~~p-------i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~ 74 (163)
.|+.+|. |++++.+|.|+|| +.++++.+..- |.+-+++=+..-...-..-............+....+.+
T Consensus 5 ~~~~~~~~w~~i~f~il~~iL~~~k~l~~pi~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~ 84 (167)
T PRK14475 5 FNLSNPEFWVGAGLLIFFGILIALKVLPKALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAA 84 (167)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455564 5557777777766 46777766543 344444333333333333334444555667777888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHH
Q psy2889 75 THEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSS 154 (163)
Q Consensus 75 a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~ 154 (163)
++.++..+.+++..++....+.+++.|+.+++.....+..++..+... -+...|..+..+-++...+...-++
T Consensus 85 A~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~e~~~a~~el~~e~~~-------lAv~~A~kil~~~l~~~~~~~lid~ 157 (167)
T PRK14475 85 AKADARRMEAEAKEKLEEQIKRRAEMAERKIAQAEAQAAADVKAAAVD-------LAAQAAETVLAARLAGAKSDPLVDA 157 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHcCHHHHHHHHHH
Confidence 999999999999999999999999999999988888887777665544 4566666666666666666666666
Q ss_pred HHHHH
Q psy2889 155 LLNQL 159 (163)
Q Consensus 155 li~~~ 159 (163)
+|+..
T Consensus 158 ~i~~~ 162 (167)
T PRK14475 158 AIGQM 162 (167)
T ss_pred HHHHH
Confidence 66554
No 38
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=98.78 E-value=7.8e-06 Score=60.16 Aligned_cols=141 Identities=13% Similarity=0.086 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 14 AHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLI 93 (163)
Q Consensus 14 ~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~ 93 (163)
|-|+++-.+|.|++|..++++.+.+-+. +.+.+.-+.......+++....+.+..+. +.+..+.+|+.++..+
T Consensus 3 ~~~~~~~~~i~Flil~~il~~~~~~pi~---~~l~~R~~~I~~~l~~a~~~~~~a~~~~~----e~~~~l~~a~~ea~~i 75 (156)
T PRK05759 3 LNGTLIGQLIAFLILVWFIMKFVWPPIM---KALEERQKKIADGLAAAERAKKELELAQA----KYEAQLAEARAEAAEI 75 (156)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 4466777777777777777777666552 33444444444444555555554444443 5556667777777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhcCHHHHHHHHHHHHh
Q psy2889 94 IEKSKKKATEEANIILYNARVEIIKQINIARENLHNE-------IVNLAIKSAEKILNNKITIEVNSSLLNQLKI 161 (163)
Q Consensus 94 ~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~-------i~~la~~~a~kll~~~i~~~~~~~li~~~i~ 161 (163)
++++..+|....+.++..++.+++...+.+...+..+ +...+.+.|..+.++-++.......-..+++
T Consensus 76 ~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~l~~~~~~lA~~~a~k~l~~~~d~~~~~~~i~ 150 (156)
T PRK05759 76 IEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQERKRAREELRKQVADLAVAGAEKILGRELDAAAQSDLID 150 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHHH
Confidence 8888888888888887777777777777776666554 4444445555555555555444444444443
No 39
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=98.77 E-value=1e-05 Score=61.31 Aligned_cols=141 Identities=13% Similarity=0.068 Sum_probs=96.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q psy2889 12 TGAHSHGIRRTIKCCFTKKFIWPPLI---KALDDRKKKIADILAAANSEKEKVSY----DRKRIQKELIATHEENKNRIN 84 (163)
Q Consensus 12 ~~~~~~~i~Flil~~~l~~~l~~pi~---~~l~~R~~~I~~~l~~A~~~~~ea~~----~~~e~e~~L~~a~~ea~~ii~ 84 (163)
++++..+|.|++|++++++++.+-+. ..+.+.-+.......+|+....+++. ...+....+..|+.++..+.+
T Consensus 29 ~~~Inflill~lL~~fl~kPI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~ae~~~~ 108 (184)
T CHL00019 29 TNLINLSVVLGVLIYFGKGVLSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNGYSEIEREKE 108 (184)
T ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777778888888888888876553 34555555555555666555555544 444666777777888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHH
Q psy2889 85 LTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQL 159 (163)
Q Consensus 85 ~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~ 159 (163)
....+|....+.++++|+.+++.....+..++..+ +-..+++.|..+.++-+........-..++++.
T Consensus 109 ~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~l~~e-------i~~lav~~A~kil~~~ld~~~~~~lid~~i~~l 176 (184)
T CHL00019 109 NLINQAKEDLERLENYKNETIRFEQQRAINQVRQQ-------VFQLALQRALGTLNSCLNNELHLRTINANIGLL 176 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHcCHHHHHHHHHHHHHHH
Confidence 77777777777777777777777766666655444 445567777777777777777766666666654
No 40
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=98.74 E-value=1.1e-05 Score=59.65 Aligned_cols=123 Identities=15% Similarity=0.008 Sum_probs=89.7
Q ss_pred ccccCchH-HHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 6 AIQSADTG-AHSHGIRRTIKCCFTKKFIWPPL-------IKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHE 77 (163)
Q Consensus 6 ~~l~~~~~-~~~~~i~Flil~~~l~~~l~~pi-------~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ 77 (163)
+++++.++ ++..+|.|+||..+.++.+.+-+ .+-|++-...=...-.--............+.+..+.+|+.
T Consensus 2 ~~~~~~fwq~I~FlIll~ll~kfawkPI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~~ 81 (154)
T PRK06568 2 NFLDESFWLAVSFVIFVYLIYRPAKKAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESNE 81 (154)
T ss_pred CchHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666655 46666777777778888888554 44454444333333333334455556677778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 78 ENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLH 128 (163)
Q Consensus 78 ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~ 128 (163)
.+..+++++..++....+.+++.|+.++++....|..++..+....--++-
T Consensus 82 ~a~~~~~ea~~eA~~ea~r~~~~A~~~Ie~Ek~~Al~elr~eva~Lav~iA 132 (154)
T PRK06568 82 VTKKIIQEKTKEIEEFLEHKKSDAIQLIQNQKSTASKELQDEFCDEVIKLV 132 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998888777766554443
No 41
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=98.73 E-value=1.2e-05 Score=60.41 Aligned_cols=114 Identities=12% Similarity=0.068 Sum_probs=62.2
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 9 SADTGAHSHGIRRTIKCCFTKKFIWPP-------LIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKN 81 (163)
Q Consensus 9 ~~~~~~~~~~i~Flil~~~l~~~l~~p-------i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ 81 (163)
++-|+++..+|.|++|..++++.+.+- |.+-+++-++.-...-..-............+....+.+++.++..
T Consensus 20 t~~~~iInFliL~~lL~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~ 99 (173)
T PRK13453 20 TVIVTVLTFIVLLALLKKFAWGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQ 99 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555566666666666665533 3333333333333333333334444444555556666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 82 RINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINI 122 (163)
Q Consensus 82 ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~ 122 (163)
+.++...+|....+.++.+|+.+++.....+..++..+...
T Consensus 100 ~~~~~~~~A~~ea~~~~~~A~~~I~~ek~~a~~~l~~ei~~ 140 (173)
T PRK13453 100 QQEQIIHEANVRANGMIETAQSEINSQKERAIADINNQVSE 140 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666665555544443
No 42
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=98.73 E-value=1.3e-05 Score=59.39 Aligned_cols=142 Identities=15% Similarity=0.033 Sum_probs=74.5
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q psy2889 9 SADTGAHSHGIRRTIKCCFTKKFIWPPLI---KALDDRKKKIADILAAANSEKE----KVSYDRKRIQKELIATHEENKN 81 (163)
Q Consensus 9 ~~~~~~~~~~i~Flil~~~l~~~l~~pi~---~~l~~R~~~I~~~l~~A~~~~~----ea~~~~~e~e~~L~~a~~ea~~ 81 (163)
++-|+++..+|.|++|.+++++.+.+-+. ..+.+--+.......+|..... .......+....+.+++.++..
T Consensus 7 ~~~~~~inF~il~~iL~~f~~kpi~~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a~~~a~~ 86 (159)
T PRK13461 7 TIIATIINFIILLLILKHFFFDKIKAVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYKSKAEN 86 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666666654432 1222222233333333333333 3334444555556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHH
Q psy2889 82 RINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLN 157 (163)
Q Consensus 82 ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~ 157 (163)
+.++...+|....+.++.+|+.+++.....+..++..+ +-..+..+|..+.++-++.......-+++++
T Consensus 87 ~~~~i~~~A~~ea~~~~~~a~~~i~~e~~~a~~~l~~e-------i~~lA~~~a~kil~~~~~~~~~~~li~~~i~ 155 (159)
T PRK13461 87 VYEEIVKEAHEEADLIIERAKLEAQREKEKAEYEIKNQ-------AVDLAVLLSSKALEESIDESEHRRLIKDFIS 155 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHcCHHHHHHHHHHHHh
Confidence 66666666666666666666666655555554444433 3334455555555555555555555555544
No 43
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=98.72 E-value=1.5e-05 Score=59.92 Aligned_cols=49 Identities=20% Similarity=0.292 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 80 KNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLH 128 (163)
Q Consensus 80 ~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~ 128 (163)
+..+.+|+.++..+++++..+|....+.++..|+.+++...+++..++.
T Consensus 74 e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie 122 (173)
T PRK13460 74 EARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIE 122 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555555555555555555444444444443
No 44
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=98.70 E-value=1.1e-05 Score=62.22 Aligned_cols=142 Identities=9% Similarity=-0.052 Sum_probs=67.4
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q psy2889 9 SADTGAHSHGIRRTIKCCFTKKFIWPPLI---KALDDRKKKIADILAAANSEKEKV----SYDRKRIQKELIATHEENKN 81 (163)
Q Consensus 9 ~~~~~~~~~~i~Flil~~~l~~~l~~pi~---~~l~~R~~~I~~~l~~A~~~~~ea----~~~~~e~e~~L~~a~~ea~~ 81 (163)
++-++++..+|-+++|.+++|+.+.+-+. ..+.+.-+...+...+|+....++ .+...+....+..|+.++..
T Consensus 50 ~~i~qlInFlIlv~lL~k~l~kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~ 129 (205)
T PRK06231 50 VFIAHLIAFSILLLLGIFLFWKPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEALQ 129 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555544332 233333333333334443333333 33334445555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHH
Q psy2889 82 RINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLN 157 (163)
Q Consensus 82 ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~ 157 (163)
+.+++..+|....+.++.+|+.++++...++..++..+ +.+-+...|..+.++-+...-+...-.++++
T Consensus 130 ~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~~~Lk~e-------i~~lAv~iA~kiL~k~ld~~~~~~lI~~~i~ 198 (205)
T PRK06231 130 LKSELEKEANRQANLIIFQARQEIEKERRELKEQLQKE-------SVELAMLAAEELIKKKVDREDDDKLVDEFIR 198 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 55555555555555555555555555555444443332 3333444455555554444444444444443
No 45
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=98.69 E-value=1.2e-05 Score=59.42 Aligned_cols=115 Identities=17% Similarity=0.057 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 16 SHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIE 95 (163)
Q Consensus 16 ~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~ 95 (163)
++++.+++.|++|..++++-+-+-+. +.+...-+.......+++....+ ......+.++.+.+|+.++..+++
T Consensus 23 ~t~~~~~inFliL~~lL~k~l~~Pi~---~~l~~R~~~I~~~l~~Ae~~~~e----a~~~~~e~e~~L~~A~~ea~~ii~ 95 (156)
T CHL00118 23 ATLPLMALQFLLLMVLLNIILYKPLL---KVLDERKEYIRKNLTKASEILAK----ANELTKQYEQELSKARKEAQLEIT 95 (156)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777666666641 22333333333344444444443 334455777788888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 96 KSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIK 137 (163)
Q Consensus 96 ~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~ 137 (163)
++..+|+...+.++..|+.+.+...+.++.++..+-...--+
T Consensus 96 ~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~ 137 (156)
T CHL00118 96 QSQKEAKEIVENELKQAQKYIDSLLNEATKQLEAQKEKALKS 137 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888777665544333
No 46
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=98.68 E-value=2.5e-05 Score=58.12 Aligned_cols=144 Identities=11% Similarity=0.024 Sum_probs=98.2
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q psy2889 8 QSADTGAHSHGIRRTIKCCFTKKFIWPPLI---KALDDRKKKIADILAAANSEKEKV----SYDRKRIQKELIATHEENK 80 (163)
Q Consensus 8 l~~~~~~~~~~i~Flil~~~l~~~l~~pi~---~~l~~R~~~I~~~l~~A~~~~~ea----~~~~~e~e~~L~~a~~ea~ 80 (163)
.++-|+++..+|.|++|.+++|+.+.+-+. ..+.+--+...+.-.+|+....+. .....+....+.+|+.++.
T Consensus 9 ~~~~~~~inflil~~lL~~fl~kpi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~ 88 (164)
T PRK14473 9 GLLIAQLINFLLLIFLLRTFLYRPVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQERAR 88 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777888888888888888775553 344444444455555555555555 4455557777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHH
Q psy2889 81 NRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQ 158 (163)
Q Consensus 81 ~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~ 158 (163)
.+.++...+|....+.++++++.+++.....+..++.. ++-+.+..+|..+.++-+...-+...-.+++++
T Consensus 89 ~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a~~~L~~-------~i~~la~~~a~kil~~~l~~~~~~~li~~~i~~ 159 (164)
T PRK14473 89 AQEAEIIAQARREAEKIKEEARAQAEQERQRMLSELKS-------QIADLVTLTASRVLGAELQARGHDALIAESLAA 159 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHcCHHHHHHHHHHHHHh
Confidence 87777777777777778888888777777776665544 445556777777777777766666666666654
No 47
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=98.66 E-value=2.8e-05 Score=57.86 Aligned_cols=136 Identities=15% Similarity=0.034 Sum_probs=87.0
Q ss_pred Cccccc-cccCchHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q psy2889 1 MGLIYA-IQSADTGAHSHGIRRTIKCCFTKKFIWPPLI---KALDDRKKKIADILAAANSEKEKVS----YDRKRIQKEL 72 (163)
Q Consensus 1 ~~~~~~-~l~~~~~~~~~~i~Flil~~~l~~~l~~pi~---~~l~~R~~~I~~~l~~A~~~~~ea~----~~~~e~e~~L 72 (163)
|.+..| .-++-|+++..+|.|++|..++++.+.+-+. ..+.+--+...+.-.+|+....+.+ ....+....+
T Consensus 1 ~~~l~~~~~~~~~~~i~Flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii 80 (164)
T PRK14471 1 MDLLTPDFGLFFWQTILFLILLLLLAKFAWKPILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAIL 80 (164)
T ss_pred CCcccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555 3355566666667777777777877765543 2344444444445555555444444 4555666678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 73 IATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKIL 143 (163)
Q Consensus 73 ~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll 143 (163)
.+|+.++..+.+++..+|....+.+++.|+.+++.....+..++..+.... +..+|..+.++-|
T Consensus 81 ~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l~~~i~~l-------a~~~a~kil~~~l 144 (164)
T PRK14471 81 KEAREIKEKMIADAKEEAQVEGDKMIEQAKASIESEKNAAMAEIKNQVANL-------SVEIAEKVLRKEL 144 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHc
Confidence 888888888888888888888888888888888777777776666555544 3444444444444
No 48
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=98.59 E-value=5.9e-05 Score=57.17 Aligned_cols=117 Identities=9% Similarity=0.056 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 36 LIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVE 115 (163)
Q Consensus 36 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~ 115 (163)
|.+-+++=++.-.+....-.+...+......+.+..+.+|+.++..+.++...++....+.++++|+.+++....++..+
T Consensus 63 I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~~~A~~~I~~ek~~a~~~ 142 (184)
T PRK13455 63 IRSELEEARALREEAQTLLASYERKQREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRLAAAEDQIASAEAAAVKA 142 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444333333333334444455556666677777777778777777777777777777777777777777776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHH
Q psy2889 116 IIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQL 159 (163)
Q Consensus 116 i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~ 159 (163)
+..+.. +-+.+.|..+.++-+........-.+++++.
T Consensus 143 l~~~i~-------~lA~~~a~kil~~~l~~~~~~~lid~~i~~l 179 (184)
T PRK13455 143 VRDRAV-------SVAVAAAADVIAKQMTAADANALIDEAIKEV 179 (184)
T ss_pred HHHHHH-------HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 544433 3445555555555555555545555555443
No 49
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=98.54 E-value=9.7e-05 Score=53.81 Aligned_cols=136 Identities=15% Similarity=0.058 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 15 HSHGIRRTIKCCFTKKFIWPPLI---KALDDRKKKIADILAAANSEKEKV----SYDRKRIQKELIATHEENKNRINLTE 87 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~~pi~---~~l~~R~~~I~~~l~~A~~~~~ea----~~~~~e~e~~L~~a~~ea~~ii~~A~ 87 (163)
+..+|.|+||..++++.+.+-+. ..+.+--+.......+|.....++ .....+....+..++.++..+.+...
T Consensus 3 i~Flil~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~ 82 (147)
T TIGR01144 3 ISFILLVWFCMKYVWPPLAKAIETRQKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIENANKRGSEILEEAK 82 (147)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666777777665442 344444444555555555544444 44555566778888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHH
Q psy2889 88 KQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLN 157 (163)
Q Consensus 88 ~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~ 157 (163)
.++....+.++++++.+++.....+..++..+.... +..++..+.++-++.......-+++++
T Consensus 83 ~~a~~e~~~~~~~a~~~i~~e~~~a~~~l~~~~~~l-------A~~~a~kll~~~l~~~~~~~lid~~i~ 145 (147)
T TIGR01144 83 AEAREEREKIKAQARAEIEAEKEQAREELRKQVADL-------SVLGAEKIIERNIDKQAQKDLIDKLVA 145 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHcCHHHHHHHHHHHHh
Confidence 999999999999999888888888877776665554 455555555555555444444444444
No 50
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=98.53 E-value=6.1e-05 Score=59.88 Aligned_cols=143 Identities=9% Similarity=0.027 Sum_probs=84.6
Q ss_pred cccCchHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q psy2889 7 IQSADTGAHSHGIRRTIKCCFTKKFIWPPLI---KALDDRKKKIADILAAANSEKEKV----SYDRKRIQKELIATHEEN 79 (163)
Q Consensus 7 ~l~~~~~~~~~~i~Flil~~~l~~~l~~pi~---~~l~~R~~~I~~~l~~A~~~~~ea----~~~~~e~e~~L~~a~~ea 79 (163)
..++-++++..+|.|++|..|+|+.+.+-+. +.+.+.-+.......+|+....++ .....+....+.+|+.++
T Consensus 5 ~~t~~~qiInFlILv~lL~~fl~kPi~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA 84 (250)
T PRK14474 5 WFTVVAQIINFLILVYLLRRFLYKPIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAA 84 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777778888888888888775553 345555555555555555544444 445556666777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHH
Q psy2889 80 KNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLL 156 (163)
Q Consensus 80 ~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li 156 (163)
..+.++...+|....+.++..++.+++.....+..++..+ +.+.+..+|..+..+.++.......-+.++
T Consensus 85 ~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~L~~~-------v~~la~~~A~kiL~~~~d~~~~~~lid~~i 154 (250)
T PRK14474 85 DEQRQHLLNEAREDVATARDEWLEQLEREKQEFFKALQQQ-------TGQQMVKIIRAALADLANATLEQQIVGIFI 154 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 7776666666666666666666666665555555544433 334445555555555444444444344443
No 51
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=98.44 E-value=0.00013 Score=54.57 Aligned_cols=127 Identities=20% Similarity=0.213 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 16 SHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIE 95 (163)
Q Consensus 16 ~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~ 95 (163)
|.++--+|-+++|..++++-+-+-+ .+.+.+.-+.......++++...+. .....++++++.+|+.++..+++
T Consensus 23 ~~~~~~~inflil~~lL~~fl~kPi---~~~l~~R~~~I~~~l~~Ae~~~~ea----~~~~~e~e~~L~~Ar~eA~~Ii~ 95 (167)
T PRK08475 23 YDIIERTINFLIFVGILWYFAAKPL---KNFYKSRINKISKRLEEIQEKLKES----KEKKEDALKKLEEAKEKAELIVE 95 (167)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666777777777777665555 2233333334444444444444443 34456788889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCH
Q psy2889 96 KSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITI 149 (163)
Q Consensus 96 ~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~ 149 (163)
++..+|+...++++++|+.+.+..++++..++..+-...-.++=..+++.-++.
T Consensus 96 ~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ie~Ek~~a~~elk~eii~~~~~~ 149 (167)
T PRK08475 96 TAKKEAYILTQKIEKQTKDDIENLIKSFEELMEFEVRKMEREVVEEVLNELFES 149 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999888887666666655555554443
No 52
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=98.42 E-value=0.00019 Score=51.79 Aligned_cols=116 Identities=11% Similarity=0.097 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 15 HSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLII 94 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~ 94 (163)
-|+++..+|-|++|..++.+-+-+-+ .+.+.+.-+.......+++....+.+.. ..++++.+.+|+.++..++
T Consensus 5 ~~t~~~~~i~flil~~ll~~~l~~pi---~~~l~~R~~~I~~~l~~Ae~~~~ea~~~----~~~~e~~L~~a~~ea~~i~ 77 (140)
T PRK07353 5 DATLPLMAVQFVLLTFILNALFYKPV---GKVVEEREDYIRTNRAEAKERLAEAEKL----EAQYEQQLASARKQAQAVI 77 (140)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666555555543 1222333333333333444444333333 3455666677777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 95 EKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIK 137 (163)
Q Consensus 95 ~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~ 137 (163)
++...++..+.+.++..++.+++...+.+..++..+-...--+
T Consensus 78 ~~a~~~a~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~ 120 (140)
T PRK07353 78 AEAEAEADKLAAEALAEAQAEAQASKEKARREIEQQKQAALAQ 120 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777777777776666554443333
No 53
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=98.42 E-value=0.00029 Score=55.75 Aligned_cols=143 Identities=11% Similarity=0.017 Sum_probs=74.9
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q psy2889 8 QSADTGAHSHGIRRTIKCCFTKKFIWPPLI---KALDDRKKKIADILAAANSEKEKVSY----DRKRIQKELIATHEENK 80 (163)
Q Consensus 8 l~~~~~~~~~~i~Flil~~~l~~~l~~pi~---~~l~~R~~~I~~~l~~A~~~~~ea~~----~~~e~e~~L~~a~~ea~ 80 (163)
.++-|+++..+|.|++|..++++.+.+-+. +.+.+--+.......+|+....+++. ...+....+.+|+.++.
T Consensus 6 ~t~~~qiInFlil~~lL~kfl~kPi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~eA~ 85 (246)
T TIGR03321 6 FTVIAQLINFLILVWLLKRFLYRPILDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQ 85 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777777777765443 23444444444444445544444444 44444556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHH
Q psy2889 81 NRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLN 157 (163)
Q Consensus 81 ~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~ 157 (163)
.+.++...+|....+.++..++.+++.....+..+ .+.++-..+...|..+.++.+........-+++++
T Consensus 86 ~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~~~-------l~~ei~~la~~~A~kil~~~~d~~~~~~lid~~i~ 155 (246)
T TIGR03321 86 AERQRLLDEAREEADEIREKWQEALRREQAALSDE-------LRRRTGAEVFAIARKVLTDLADTDLEERMVDVFVQ 155 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 55555555555544555554554444444444333 33444444555555555555554444444444443
No 54
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=98.39 E-value=5.4e-05 Score=55.98 Aligned_cols=98 Identities=16% Similarity=0.098 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2889 65 RKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILN 144 (163)
Q Consensus 65 ~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~ 144 (163)
..+.+..|..|+.++..|+.+|+.+++..+++...+...+..+...........+..+....+..++.+++..+++++|+
T Consensus 12 ~~~A~~il~~A~~~a~~i~~~A~~~~e~~~~~g~~~G~~~g~~e~~~~~~~~~~~~~~~~~~~e~~l~~l~~~~~~kil~ 91 (166)
T TIGR02499 12 LAQAQAILAAARQRAEAILADAEEEAEASRQLGYEQGLEQFWQEAAAQLAEWQQEAEQLEASLEERLAELVLQALEQILG 91 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34778889999999999999999999998887777777776666666666777788888999999999999999999999
Q ss_pred hhcCHHHHHHHHHHHHhh
Q psy2889 145 NKITIEVNSSLLNQLKIE 162 (163)
Q Consensus 145 ~~i~~~~~~~li~~~i~~ 162 (163)
...+++.-..++...+..
T Consensus 92 ~~~~~e~l~~lv~~al~~ 109 (166)
T TIGR02499 92 EYDEPERLVRLLRQLLRA 109 (166)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 987787777888777654
No 55
>PRK06328 type III secretion system protein; Validated
Probab=98.38 E-value=4.9e-05 Score=59.43 Aligned_cols=101 Identities=21% Similarity=0.229 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 62 SYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEK 141 (163)
Q Consensus 62 ~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~k 141 (163)
-..+.+.+..|..|+.++.+++.++..+++.+++++.++..++--..-.+.-..+..+.......+..++.++++.+|++
T Consensus 25 ~~~~~~A~~il~~a~~~ae~i~~ea~~e~E~i~eeA~~eGy~eG~~~~~~~~~~l~~~~~~~~~~~e~~lv~Lal~ia~k 104 (223)
T PRK06328 25 FSALLDAQELLEKTKEDSEAYTQETHEECEKLREEAKNQGFKEGSKAWSKQLAFLEEETQKLREQVKEALVPLAIASVKK 104 (223)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667778888888888888888888888877777666665544444445677777788888999999999999999
Q ss_pred HHhhhcC--HHHHHHHHHHHHhh
Q psy2889 142 ILNNKIT--IEVNSSLLNQLKIE 162 (163)
Q Consensus 142 ll~~~i~--~~~~~~li~~~i~~ 162 (163)
+++..++ ++.--.+|.+.|..
T Consensus 105 Vi~~el~~d~e~il~lV~~aL~~ 127 (223)
T PRK06328 105 IIGKELELHPETIVSIIANSLKE 127 (223)
T ss_pred HHHHHHhhCHHHHHHHHHHHHHh
Confidence 9999774 67777888877764
No 56
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=98.36 E-value=0.00045 Score=51.36 Aligned_cols=114 Identities=13% Similarity=0.021 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 12 TGAHSHGIRRTIKCCFTKKFIWPPLIKAL---DDRKKKIADILAAA----NSEKEKVSYDRKRIQKELIATHEENKNRIN 84 (163)
Q Consensus 12 ~~~~~~~i~Flil~~~l~~~l~~pi~~~l---~~R~~~I~~~l~~A----~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~ 84 (163)
|.++..++.++++++++++.+.+-+..-- .+--........++ .+...+..+...++...+..|+.++..+.+
T Consensus 11 ~~~i~F~ill~ll~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~~~ 90 (161)
T COG0711 11 WQLIAFVILLWLLKKFVWKPILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAE 90 (161)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555566666654443322 22222222222222 233444444556667777777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 85 LTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARE 125 (163)
Q Consensus 85 ~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~ 125 (163)
+.+.+++...+.+...|+.+++...+.+..++..+......
T Consensus 91 e~~~~a~~e~~r~~~~a~~~I~~e~~~a~~~l~~~~~~la~ 131 (161)
T COG0711 91 EIKAEAEEELERIKEAAEAEIEAEKERALEELRAEVAELAV 131 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888877777777777776666554443
No 57
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=98.35 E-value=5.6e-05 Score=53.76 Aligned_cols=118 Identities=19% Similarity=0.163 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 17 HGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEK 96 (163)
Q Consensus 17 ~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~ 96 (163)
+++..+|.|++|..+++.++.+-+. ..+.+.-+.......+++....+.+. ...+....+.+|+.++..++++
T Consensus 1 tl~~~~i~Flil~~~l~~~~~~pi~---~~l~~R~~~I~~~~~~a~~~~~ea~~----~~~e~~~~l~~a~~ea~~i~~~ 73 (132)
T PF00430_consen 1 TLFWQLINFLILFFLLNKFLYKPIK---KFLDERKAKIQSELEEAEELKEEAEQ----LLAEYEEKLAEAREEAQEIIEE 73 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHH---HHCS--S-HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777888888777663 23333344444444455554444433 3456677777888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 97 SKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEK 141 (163)
Q Consensus 97 ~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~k 141 (163)
+..+++...+.++..++.+++.....+..++..+......++-..
T Consensus 74 a~~~a~~~~~~~~~ea~~~~~~~~~~a~~~i~~e~~~a~~~l~~~ 118 (132)
T PF00430_consen 74 AKEEAEKEKEEILAEAEKEAERIIEQAEAEIEQEKEKAKKELRQE 118 (132)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888777777666554444333
No 58
>PF05405 Mt_ATP-synt_B: Mitochondrial ATP synthase B chain precursor (ATP-synt_B); InterPro: IPR008688 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit B from the F0 complex in F-ATPases found in mitochondria of eukaryotes (metazoa, viridiplantae (plants and green algae), jakobidae and the malawimonadidae). The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2WSS_X 2CLY_D.
Probab=98.34 E-value=2.9e-05 Score=57.71 Aligned_cols=99 Identities=18% Similarity=0.126 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q psy2889 15 HSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQC---- 90 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a---- 90 (163)
++.+++|+++++++++++.||+.+.+++|.+.|.+.+..+......+-...-++...+.........+.+-.+..+
T Consensus 17 ~~v~~~f~~f~~~~~k~~g~~i~~~ld~~~~~i~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~ke~~~~~~ 96 (163)
T PF05405_consen 17 TLVALCFIIFIIFIYKKFGPSIAEWLDERIQKIEDELNQSRNDHIKALKERIEQVKKEQSLVEGTKMLFEASKENVALQL 96 (163)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 5678999999999999999999999999999999999999988877766655555555555444444444444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 91 KLIIEKSKKKATEEANIILYNAR 113 (163)
Q Consensus 91 ~~~~~~~~~~A~~e~~~~~~~a~ 113 (163)
+.-..........++.+.++..-
T Consensus 97 e~~~~~~~~~v~~evk~~Ld~~v 119 (163)
T PF05405_consen 97 EAFYREQQAAVAQEVKRRLDYWV 119 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444433
No 59
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=98.29 E-value=9.6e-05 Score=56.74 Aligned_cols=97 Identities=14% Similarity=0.058 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 61 VSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAE 140 (163)
Q Consensus 61 a~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~ 140 (163)
.+....+.+..+.+|+.++..|+++|+.+++.+..+ |+.+++.............+.+....+++.+.+.......
T Consensus 17 ~eeA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~k----Ae~ea~~~~~~~~saa~l~~r~~ll~~k~~i~~~~~~~~~ 92 (198)
T PRK01558 17 LEEAERLANEIILEAKEEAEEIIAKAEEEAKELKAK----AEKEANDYKRHALEASRQAGRDLLISFEKSIKSLFKAALK 92 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667778888999999999999999998877444 6667777777777777788888888888888888888888
Q ss_pred HHHhhhcCHHHHHHHHHHHHh
Q psy2889 141 KILNNKITIEVNSSLLNQLKI 161 (163)
Q Consensus 141 kll~~~i~~~~~~~li~~~i~ 161 (163)
+.+...++++....++...+.
T Consensus 93 ~~~~~~~~~e~~~~li~~ll~ 113 (198)
T PRK01558 93 DEVAEVYDSNFLRELIIRVVD 113 (198)
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 888888888888888877664
No 60
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=98.24 E-value=0.0006 Score=58.47 Aligned_cols=113 Identities=6% Similarity=0.018 Sum_probs=77.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 11 DTGAHSHGIRRTIKCCFTKKFIWPPLIK---ALDDRKKKIADILAAANSEKE----KVSYDRKRIQKELIATHEENKNRI 83 (163)
Q Consensus 11 ~~~~~~~~i~Flil~~~l~~~l~~pi~~---~l~~R~~~I~~~l~~A~~~~~----ea~~~~~e~e~~L~~a~~ea~~ii 83 (163)
-|+++..+|.|++|.+++++.+.+-+.+ .+.+--+...+.-.+++..+. .......+.+..+.+|+.+++++.
T Consensus 5 i~qlInFlIl~~lL~kfl~~Pi~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~ 84 (445)
T PRK13428 5 IGQLIGFAVIVFLVWRFVVPPVRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAERIA 84 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666677777778888777644322 222222222233444444433 366667778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 84 NLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIA 123 (163)
Q Consensus 84 ~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a 123 (163)
++...++....+.+++.++.++++..+++..++..+....
T Consensus 85 ~~~~~~A~~ea~~i~~~a~~~Ie~ek~~a~~elr~ei~~l 124 (445)
T PRK13428 85 EQLRAQADAEAERIKVQGARQVQLLRAQLTRQLRLELGHE 124 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888888877766655443
No 61
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=98.21 E-value=0.00052 Score=53.07 Aligned_cols=98 Identities=15% Similarity=0.192 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q psy2889 60 KVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNL-AIKS 138 (163)
Q Consensus 60 ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~l-a~~~ 138 (163)
..+....+.+..+.+|+.++..|+++|+.+++.+.+++..++..+.. .+...++....++..+++.++.+- --..
T Consensus 21 iL~eA~~eA~~Il~eAk~~Ae~Ii~eA~~EAe~ii~~A~~eae~ek~----r~~s~a~l~~R~~~l~aKqevi~~vf~~a 96 (207)
T PRK01005 21 TLKPAEEEAGAIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKLK----QGESALVQAGKRSLESLKQAVENKIFRES 96 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666666666666655555544444433333 444444444555555666666653 3345
Q ss_pred HHHHHhhhc-CHHHHHHHHHHHHh
Q psy2889 139 AEKILNNKI-TIEVNSSLLNQLKI 161 (163)
Q Consensus 139 a~kll~~~i-~~~~~~~li~~~i~ 161 (163)
.++++...+ |++.-.++|-..++
T Consensus 97 ~~~lv~~~~~d~~~l~~lI~~~v~ 120 (207)
T PRK01005 97 LGEWLEHVLTDPEVSAKLIQALVQ 120 (207)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 567777777 67777777776554
No 62
>PRK06937 type III secretion system protein; Reviewed
Probab=98.08 E-value=0.00057 Score=52.61 Aligned_cols=100 Identities=10% Similarity=0.057 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 63 YDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKI 142 (163)
Q Consensus 63 ~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kl 142 (163)
...-+.++.+..|+.++++|+.+|+...+..+++--++..+++..-..+.-.....+..+....+..++.++++.+++|+
T Consensus 27 ~~~~~A~~il~~A~~~A~~i~~~A~~~~e~~~~~Gy~~G~~~a~~e~~e~l~~~~~~~~~~~~~~e~~l~~Lvl~ia~ki 106 (204)
T PRK06937 27 QSLLSAEELVEAARQRAEEIEAEAQEVYEQQKQLGYQAGLDEARTEQAELILETVLQCQEFYRGVEQQMSEVVLEAVRKI 106 (204)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888888888888888877777776666655444332222222233456677899999999999999999
Q ss_pred HhhhcCHHHHHHHHHHHHhh
Q psy2889 143 LNNKITIEVNSSLLNQLKIE 162 (163)
Q Consensus 143 l~~~i~~~~~~~li~~~i~~ 162 (163)
++...+++.-..++.+.+..
T Consensus 107 l~~~~~~e~i~~lv~~al~~ 126 (204)
T PRK06937 107 LNDYDDVERTLQVVREALAL 126 (204)
T ss_pred HhccCcHHHHHHHHHHHHHh
Confidence 99866666666777776654
No 63
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=98.05 E-value=0.0006 Score=52.04 Aligned_cols=98 Identities=13% Similarity=0.124 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 62 SYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEK 141 (163)
Q Consensus 62 ~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~k 141 (163)
+....++++.+.+|+.++.++++++..+|+...+.+...|+.+++.....+......+.....-..+.++.+-+..-+.+
T Consensus 13 ~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~~~v~~~a~~ 92 (198)
T PRK03963 13 REAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELISEVLEAVRE 92 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666776766666666666666666666555533333333333333333333334444444444444
Q ss_pred HHhhhcCHHHHHHHHHHHH
Q psy2889 142 ILNNKITIEVNSSLLNQLK 160 (163)
Q Consensus 142 ll~~~i~~~~~~~li~~~i 160 (163)
-|.. ++++....++...|
T Consensus 93 ~l~~-~~~~~Y~~~l~~li 110 (198)
T PRK03963 93 RLAE-LPEDEYFETLKALT 110 (198)
T ss_pred HHHh-hhhhhHHHHHHHHH
Confidence 4443 33345555555554
No 64
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=98.03 E-value=0.0002 Score=55.34 Aligned_cols=70 Identities=17% Similarity=0.098 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 68 IQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEK 141 (163)
Q Consensus 68 ~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~k 141 (163)
+++.+.+|+.++.+|+.+|+.+|+. ++.+|+.++++++++|+.+++.++.++...+.-...+.-..+-..
T Consensus 18 ~~eiL~eA~~eA~~Il~eAk~~Ae~----Ii~eA~~EAe~ii~~A~~eae~ek~r~~s~a~l~~R~~~l~aKqe 87 (207)
T PRK01005 18 REETLKPAEEEAGAIVHNAKEQAKR----IIAEAQEEAEKIIRSAEETADQKLKQGESALVQAGKRSLESLKQA 87 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778899999999999999999964 777778889999999999999999888885554444443333333
No 65
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=98.02 E-value=0.00078 Score=51.47 Aligned_cols=98 Identities=14% Similarity=0.165 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2889 65 RKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILN 144 (163)
Q Consensus 65 ~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~ 144 (163)
..+++..|.+|+.+|++|+.+|+.+++.+.+....++.+..-+....--.....+.+.....+...+..+.....+++|+
T Consensus 29 ~~~a~~IL~~A~~qA~~Il~~Ae~eAe~l~~~a~e~a~~~~~q~a~~ll~~~~~~~e~l~~~l~~~~~~ll~~al~~lL~ 108 (191)
T PF06188_consen 29 QQQAREILEDARQQAEQILQQAEEEAEALLEQAYEQAEAQFWQQANALLQEWQQQREQLLQQLEEQAEELLSQALERLLD 108 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678899999999999999999999999995555555554444444444555667777777888888888888899998
Q ss_pred hhcCHHHHHHHHHHHHhh
Q psy2889 145 NKITIEVNSSLLNQLKIE 162 (163)
Q Consensus 145 ~~i~~~~~~~li~~~i~~ 162 (163)
+--++..-..++..++..
T Consensus 109 e~~~~qrv~aLlr~l~~~ 126 (191)
T PF06188_consen 109 ETPDQQRVAALLRQLLAS 126 (191)
T ss_pred cCCchHHHHHHHHHHHHh
Confidence 876677777777777653
No 66
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=98.02 E-value=0.00083 Score=50.91 Aligned_cols=100 Identities=16% Similarity=0.127 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 62 SYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEK 141 (163)
Q Consensus 62 ~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~k 141 (163)
+....+.++.+.+|+.++..|+.+|+++++.+..++..++..++..+...+......+.....-..+.++.+-....+..
T Consensus 12 ~~a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~~L~~r~~~l~~v~~~a~~ 91 (188)
T PRK02292 12 DEARARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNARKEVLEDVRNQVED 91 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778889999999999999999999999999999999999999999999999999988888899988888888888
Q ss_pred HHhhhcCHHHHHHHHHHHHhh
Q psy2889 142 ILNNKITIEVNSSLLNQLKIE 162 (163)
Q Consensus 142 ll~~~i~~~~~~~li~~~i~~ 162 (163)
-|.. ++++....++...|.+
T Consensus 92 kL~~-~~~~~y~~~l~~li~~ 111 (188)
T PRK02292 92 EIAS-LDGDKREELTKSLLDA 111 (188)
T ss_pred HHHh-cchhhHHHHHHHHHHh
Confidence 7776 4444666777766653
No 67
>PRK09098 type III secretion system protein HrpB; Validated
Probab=97.97 E-value=0.0027 Score=50.04 Aligned_cols=97 Identities=10% Similarity=0.074 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Q psy2889 59 EKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYN-----------ARVEIIKQINIARENL 127 (163)
Q Consensus 59 ~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~-----------a~~~i~~e~~~a~~~l 127 (163)
.-...+..+.++.|++|+.++++|+.+|+.+|+.+++++..+++...++=... .-.............+
T Consensus 32 ~~~~~~~~~~~~ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~e~~~~~Gy~eG~~~a~~e~~~~~~~~~~~~~~~~~~~ 111 (233)
T PRK09098 32 AALAAVHAERDAVLAAARARAERIVAEARAQAEAILEAARREADRSARRGYAAGLRQALAEWHARGADHAFAERRAARRM 111 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666666666666666666666666665555433322211111 1112222233555668
Q ss_pred HHHHHHHHHHHHHHHHhhhcCHHHHHHHH
Q psy2889 128 HNEIVNLAIKSAEKILNNKITIEVNSSLL 156 (163)
Q Consensus 128 ~~~i~~la~~~a~kll~~~i~~~~~~~li 156 (163)
+.++.+++..+++++++.. +++.--..+
T Consensus 112 e~~Lv~lv~~~v~kiv~~~-d~~~ll~~v 139 (233)
T PRK09098 112 RERLAEIVAAAVEQIVLGE-DRAALFARA 139 (233)
T ss_pred HHHHHHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 9999999999999999864 554433333
No 68
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=97.92 E-value=0.0024 Score=44.24 Aligned_cols=74 Identities=22% Similarity=0.225 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 64 DRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIK 137 (163)
Q Consensus 64 ~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~ 137 (163)
.-......+.+|+.++.+++.+|+.++..+..++..+|+...+.+++.++.+++.+....+.+-+.++.++...
T Consensus 15 aE~~ad~~IeeAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~eI~~~ae~~~~~~~~k 88 (108)
T COG2811 15 AEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAEKEASAILSK 88 (108)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666666666666666666666666666666666666666666666666666666666655553
No 69
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=97.86 E-value=0.0016 Score=49.54 Aligned_cols=99 Identities=13% Similarity=0.013 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 63 YDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKI 142 (163)
Q Consensus 63 ~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kl 142 (163)
....+.+..+.+|+.++.+|+.+|+.+++.+.+.+...++.++....+........+.....-..+.++.+-+..-+.+-
T Consensus 13 ea~~~a~~I~~eA~~~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~R~~~L~aree~I~~v~~~a~e~ 92 (185)
T PRK01194 13 SREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARSIKREKRREILKDYLDIAYEH 92 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677889999999999999999999999999999999999999888888888888888888888888888888888
Q ss_pred HhhhcCHHHHHHHHHHHHh
Q psy2889 143 LNNKITIEVNSSLLNQLKI 161 (163)
Q Consensus 143 l~~~i~~~~~~~li~~~i~ 161 (163)
|..-.+++....++...|.
T Consensus 93 L~~l~~~~~Y~~~L~~LI~ 111 (185)
T PRK01194 93 LMNITKSKEYDSILNKMIE 111 (185)
T ss_pred HHcccCCchHHHHHHHHHH
Confidence 8766633356666665553
No 70
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=97.85 E-value=0.0021 Score=44.53 Aligned_cols=94 Identities=18% Similarity=0.211 Sum_probs=66.3
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q psy2889 51 LAAAN-SEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIAREN-LH 128 (163)
Q Consensus 51 l~~A~-~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~-l~ 128 (163)
+..++ .+....+....+.++.+.+|+.++.+|+.+|..+|....++.+..+++++.........+-+.+....... -.
T Consensus 12 Ik~aE~~ad~~IeeAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~eI~~~ae~~~~~~~~ka~~ 91 (108)
T COG2811 12 IKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAEKEASAILSKAAE 91 (108)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 44444 34456777888889999999999999999999999999988888777776655555544444444444442 44
Q ss_pred HHHHHHHHHHHHHHHh
Q psy2889 129 NEIVNLAIKSAEKILN 144 (163)
Q Consensus 129 ~~i~~la~~~a~kll~ 144 (163)
..+...++....++|.
T Consensus 92 ~k~~~~a~~~~~~~l~ 107 (108)
T COG2811 92 GKVVEAALSEFLAILE 107 (108)
T ss_pred hHHHHHHHHHHHHHhc
Confidence 5667777777666653
No 71
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=97.80 E-value=0.0014 Score=49.93 Aligned_cols=78 Identities=18% Similarity=0.186 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2889 67 RIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILN 144 (163)
Q Consensus 67 e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~ 144 (163)
-.+..+.+|+.++++|+++|+.+++.+.+++..+|+.+++.+++.|+..++.++.++....+.++..--...=..++.
T Consensus 7 i~~~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~~ 84 (198)
T PRK03963 7 IIQEINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELIS 84 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777788888888888888888888888888888888888887777777776666666655444444444433
No 72
>MTH00169 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=97.72 E-value=0.00013 Score=46.47 Aligned_cols=45 Identities=16% Similarity=0.037 Sum_probs=40.5
Q ss_pred cccccCch---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy2889 5 YAIQSADT---GAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIAD 49 (163)
Q Consensus 5 ~~~l~~~~---~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~ 49 (163)
||++++.+ +++|.++.|+++|+++.+++.|.+.+.++.|......
T Consensus 1 MPQLd~~~f~sQ~~Wl~i~f~~ly~l~s~~iLPri~~~l~~R~~~~~~ 48 (67)
T MTH00169 1 MPQLDSVTYLTQYIWTLIILFFLFSLLVNYILPKIQQQLVIRTKGVNS 48 (67)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 67777763 4599999999999999999999999999999998877
No 73
>MTH00025 ATP8 ATP synthase F0 subunit 8; Validated
Probab=97.66 E-value=0.00013 Score=46.75 Aligned_cols=45 Identities=16% Similarity=0.050 Sum_probs=39.7
Q ss_pred cccccCch---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy2889 5 YAIQSADT---GAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIAD 49 (163)
Q Consensus 5 ~~~l~~~~---~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~ 49 (163)
||+++|.+ +++|.++.|+++++++.+++.|.+.+.+..|.....+
T Consensus 1 MPQLd~~~f~nQi~W~~i~f~il~~l~sk~iLP~i~~~~~~R~~i~k~ 48 (70)
T MTH00025 1 MPQLDTTTYLTQYRWTLIVLFLLLFFLVFFVLPTIKRNWLIRKSLMKK 48 (70)
T ss_pred CCCcchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 67887774 4599999999999999999999999999999987754
No 74
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=97.65 E-value=0.01 Score=47.88 Aligned_cols=105 Identities=21% Similarity=0.240 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHH---HHHHHHHH
Q psy2889 58 KEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKA------------TEEANIILYNARV---EIIKQINI 122 (163)
Q Consensus 58 ~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A------------~~e~~~~~~~a~~---~i~~e~~~ 122 (163)
...+.+...+.+..+.+++.+++.++.+++.+++..++++.++. ..+....+..... .+......
T Consensus 80 ~~~l~~~~~ea~~~l~~a~~q~e~~~~ea~~e~e~~~~~a~~eGy~eG~~~g~~e~~~e~~~~~~~l~~~~~~l~~~~~~ 159 (281)
T PRK06669 80 KEELLKKTDEASSIIEKLQMQIEREQEEWEEELERLIEEAKAEGYEEGYEKGREEGLEEVRELIEQLNKIIEKLIKKREE 159 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555555554444332 2233333333222 23345555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcC--HHHHHHHHHHHHhh
Q psy2889 123 ARENLHNEIVNLAIKSAEKILNNKIT--IEVNSSLLNQLKIE 162 (163)
Q Consensus 123 a~~~l~~~i~~la~~~a~kll~~~i~--~~~~~~li~~~i~~ 162 (163)
....+..++.++++.+|+++++..++ +..-..++...+..
T Consensus 160 ~l~~~e~elv~Lal~iaekvi~~~~~~~~~~i~~li~~al~~ 201 (281)
T PRK06669 160 ILESSEEEIVELALDIAKKVIKEISENSKEIALALVKELLKE 201 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 66678889999999999999977664 44445667666654
No 75
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=97.57 E-value=0.011 Score=40.74 Aligned_cols=54 Identities=15% Similarity=0.109 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 65 RKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIK 118 (163)
Q Consensus 65 ~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~ 118 (163)
...|+..+.+|+.++..|++.|+.+++.....++.+++.++..+...++..+..
T Consensus 38 ~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~~elk~eia~L~~~a~~k~~~ 91 (103)
T PRK08404 38 KKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIEELKVKAEENFET 91 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555555555555555555544444443
No 76
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=97.54 E-value=0.0087 Score=45.21 Aligned_cols=97 Identities=14% Similarity=0.115 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 64 DRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKIL 143 (163)
Q Consensus 64 ~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll 143 (163)
...+.+..+.+|+.+++.++.++..++....+.....+..+++............+.....-..+.++.+-..+-+.+-|
T Consensus 6 A~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~~~l~~k~~~i~~v~~~~~~~L 85 (198)
T PF01991_consen 6 AQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKEREISKAELEARRELLEAKQEIIDEVFEEVKEKL 85 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677777777777777777777777777777777777777777777777777777777777777777666666
Q ss_pred hhhcCHH-HHHHHHHHHH
Q psy2889 144 NNKITIE-VNSSLLNQLK 160 (163)
Q Consensus 144 ~~~i~~~-~~~~li~~~i 160 (163)
..-..+. .-..++..+|
T Consensus 86 ~~~~~~~~~Y~~~L~~li 103 (198)
T PF01991_consen 86 KSFSKDPDDYKKFLKKLI 103 (198)
T ss_dssp HCTTCCC-THHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHH
Confidence 6544332 4444444444
No 77
>PF02326 YMF19: Plant ATP synthase F0; InterPro: IPR003319 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit 8 (or ymf19) found in the F0 complex of mitochondrial F-ATPases from plants and algae. This subunit is sometimes found in association and N-terminal to IPR009455 from INTERPRO, in higher plants. Subunit 8 differs in sequence between plants, Metazoa (IPR001421 from INTERPRO) and fungi (IPR009230 from INTERPRO) [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=97.44 E-value=0.00099 Score=44.48 Aligned_cols=67 Identities=16% Similarity=0.018 Sum_probs=54.2
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 8 QSADTGAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIA 74 (163)
Q Consensus 8 l~~~~~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~ 74 (163)
++.-.+++|.++.|+++++++.+++.|.+.+.+.-|...+.+..........+.......+...+.+
T Consensus 6 ~tf~sQ~fW~~i~f~~~y~~~~~~~lP~i~~~lk~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 72 (86)
T PF02326_consen 6 VTFFSQYFWLLIFFFFFYIFLVNFILPKISRILKLRSKLSSSSISSKSKLNSESSKLSVSYDKLLSN 72 (86)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhHHHHHHHH
Confidence 3444566999999999999999999999999999999999998877776666666666655555544
No 78
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=97.37 E-value=0.01 Score=45.55 Aligned_cols=67 Identities=12% Similarity=0.094 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 61 VSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENL 127 (163)
Q Consensus 61 a~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l 127 (163)
..+..++.+..+.+|+.+++.|+..|+.+++.....+...+.....+.+..+++.|..........+
T Consensus 28 i~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~~~~~~~~saa~l~~r~~ll~~k~~i~~~~~~~~~~~ 94 (198)
T PRK01558 28 ILEAKEEAEEIIAKAEEEAKELKAKAEKEANDYKRHALEASRQAGRDLLISFEKSIKSLFKAALKDE 94 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777888888888888888888888888888888888888888888888865554444444
No 79
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=97.29 E-value=0.013 Score=40.35 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 72 LIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIAREN 126 (163)
Q Consensus 72 L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~ 126 (163)
|..|..+|..|+.+|+......+.++..+|..+++....................
T Consensus 9 Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~e~~~~~~~~~~~~~ 63 (105)
T PF03179_consen 9 LLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIEEFRAEAEEEFKEKEAEAEGE 63 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4455555555555555555555555555555544444444444444444444333
No 80
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=97.23 E-value=0.017 Score=43.57 Aligned_cols=77 Identities=14% Similarity=0.170 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy2889 71 ELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKI 147 (163)
Q Consensus 71 ~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i 147 (163)
...+|+.++++|+.+|+.+++.+..++..+++...+...+.++.+++..+.........+.-......-..++..-+
T Consensus 2 I~~eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~~~l~~k~~~i~~v~ 78 (198)
T PF01991_consen 2 IEEEAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKEREISKAELEARRELLEAKQEIIDEVF 78 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999988888887777777766666666555555443
No 81
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=96.99 E-value=0.036 Score=42.07 Aligned_cols=33 Identities=15% Similarity=-0.008 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 80 KNRINLTEKQCKLIIEKSKKKATEEANIILYNA 112 (163)
Q Consensus 80 ~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a 112 (163)
..+...++.++....+++...|+-++.+.+-.+
T Consensus 45 ~~~~~k~~~e~~~~~~riis~A~Le~R~~~L~a 77 (185)
T PRK01194 45 EYYEKKMRAEISRLKKSIIDKANIEARSIKREK 77 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 334444445555555555555555444444444
No 82
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=96.96 E-value=0.051 Score=35.93 Aligned_cols=62 Identities=19% Similarity=0.185 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 61 VSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINI 122 (163)
Q Consensus 61 a~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~ 122 (163)
......+....+..|+.++..++.++..+|......++..|+.+++.....+..++..+...
T Consensus 15 l~~A~~ea~~Ii~~A~~~A~~~~~~a~~~A~~ea~~ii~~Ak~ei~~e~~~a~~e~k~ev~~ 76 (85)
T TIGR02926 15 IEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEKEAEKIREEGEKEIEA 76 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666666666666666666666666666665555555443
No 83
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=96.86 E-value=0.12 Score=39.53 Aligned_cols=85 Identities=16% Similarity=0.124 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2889 65 RKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILN 144 (163)
Q Consensus 65 ~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~ 144 (163)
.++.+..+.+|+.+++.|.+++...++...+.+...++.+++............+-.+..-+.+.++.+-....+..-|.
T Consensus 16 ~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~~Le~~ee~l~~~~~~~~e~L~ 95 (194)
T COG1390 16 EEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLEARRKLLEAKEEILESVFEAVEEKLR 95 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777788888888888888888888888888888888888888877777777777777777777777777777777
Q ss_pred hhcCH
Q psy2889 145 NKITI 149 (163)
Q Consensus 145 ~~i~~ 149 (163)
.-.++
T Consensus 96 ~i~~~ 100 (194)
T COG1390 96 NIASD 100 (194)
T ss_pred cCcCC
Confidence 65543
No 84
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=96.83 E-value=0.066 Score=40.48 Aligned_cols=37 Identities=8% Similarity=0.174 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 64 DRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKK 100 (163)
Q Consensus 64 ~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~ 100 (163)
...+.+..+.+|+.++.++..++..+++.....+...
T Consensus 25 a~~~~~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r 61 (188)
T PRK02292 25 ADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQ 61 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666666666555555555555555443
No 85
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=96.80 E-value=0.13 Score=38.09 Aligned_cols=127 Identities=10% Similarity=0.053 Sum_probs=73.7
Q ss_pred CchHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 10 ADTGAHS---HGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLT 86 (163)
Q Consensus 10 ~~~~~~~---~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A 86 (163)
|.+...+ +++-++|.|++|+.++++-+..-+ ..-+...-+.......+|+....+ ..+++.+.++.+.+|
T Consensus 2 PQfd~~~~~sqifw~iI~FlILy~ll~kf~~ppI---~~iLe~R~~~I~~~L~~Ae~~k~e----Ae~l~a~ye~~L~~A 74 (155)
T PRK06569 2 PQFDIATYYSQIFWLIVTFGLLYIFVYKFITPKA---EEIFNNRQTNIQDNITQADTLTIE----VEKLNKYYNEEIDKT 74 (155)
T ss_pred CCCchhhhhHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 4444443 344444555666666555544433 223333444444455555554444 455566778888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q psy2889 87 EKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARE-------NLHNEIVNLAIKSAEKIL 143 (163)
Q Consensus 87 ~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~-------~l~~~i~~la~~~a~kll 143 (163)
+.++..+..+..+.+..++........+++-.-..+-.+ +++.+..+--+.++..+.
T Consensus 75 r~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~ 138 (155)
T PRK06569 75 NTEIDRLKKEKIDSLESEFLIKKKNLEQDLKNSINQNIEDINLAAKQFRTNKSEAIIKLAVNII 138 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999988888888888777777766665544444333 444444444444444444
No 86
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=96.62 E-value=0.14 Score=39.20 Aligned_cols=77 Identities=22% Similarity=0.223 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2889 69 QKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNN 145 (163)
Q Consensus 69 e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~ 145 (163)
+..+.+++.++++|..+|..+++.+.+++...+....+.....++.+.+..+..+......++.......-+++|..
T Consensus 9 ~~I~~~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~~Le~~ee~l~~ 85 (194)
T COG1390 9 KKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLEARRKLLEAKEEILES 85 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777777777777777777776666666666666666666666666665555555555555555444
No 87
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.58 E-value=0.11 Score=47.71 Aligned_cols=77 Identities=16% Similarity=0.132 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 34 PPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILY 110 (163)
Q Consensus 34 ~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~ 110 (163)
.-+..-|++.+..++....++++.+.+++....+|+.++.+.+.+..+++.+|+.++..+..++..+++.-...+.+
T Consensus 514 ~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 514 NVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555666777778888888899999999999999999999999999999999988888777776666555555543
No 88
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=96.54 E-value=0.15 Score=46.81 Aligned_cols=76 Identities=17% Similarity=0.243 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 34 PPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIIL 109 (163)
Q Consensus 34 ~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~ 109 (163)
.-+..-|++.+........+++..+.+++....+|+.+....+.+...++++++.++.....++..+++.-...+.
T Consensus 519 ~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk 594 (782)
T PRK00409 519 NELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELR 594 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666777778888888888888888888888888888888888888888777666655555444444
No 89
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=96.51 E-value=0.12 Score=36.24 Aligned_cols=35 Identities=6% Similarity=0.002 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2889 112 ARVEIIKQINIARENLHNEIVNLAIKSAEKILNNK 146 (163)
Q Consensus 112 a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~ 146 (163)
+..+++.+...-..+++.....-.-.++..+|..-
T Consensus 69 ~~~~l~~et~~ki~~ik~~~~~~~~~Vv~~Ll~~V 103 (113)
T TIGR01147 69 AEEKAEAETQAKIREIKKAVQKNKDAVIKDLLHLV 103 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45556666666666666666666666666665543
No 90
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=96.49 E-value=0.15 Score=34.97 Aligned_cols=47 Identities=19% Similarity=0.199 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 67 RIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNAR 113 (163)
Q Consensus 67 e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~ 113 (163)
+....+.+|+.+...++.+|+.+|+.+++....+...+.........
T Consensus 15 eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~e~~~~~~~~~~~ 61 (105)
T PF03179_consen 15 EAQEIVEEARKEREQRLKQAKEEAEKEIEEFRAEAEEEFKEKEAEAE 61 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444445555555555555555555555544444444444444433
No 91
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=96.30 E-value=0.15 Score=38.96 Aligned_cols=24 Identities=8% Similarity=0.335 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 76 HEENKNRINLTEKQCKLIIEKSKK 99 (163)
Q Consensus 76 ~~ea~~ii~~A~~~a~~~~~~~~~ 99 (163)
..++.+|+++|+.+|+.++.++..
T Consensus 29 ~~~a~~IL~~A~~qA~~Il~~Ae~ 52 (191)
T PF06188_consen 29 QQQAREILEDARQQAEQILQQAEE 52 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555544444444333
No 92
>PRK12704 phosphodiesterase; Provisional
Probab=96.20 E-value=0.34 Score=42.54 Aligned_cols=6 Identities=0% Similarity=-0.352 Sum_probs=2.3
Q ss_pred HHHHHH
Q psy2889 15 HSHGIR 20 (163)
Q Consensus 15 ~~~~i~ 20 (163)
++.++.
T Consensus 8 ~~~ivg 13 (520)
T PRK12704 8 LIALVA 13 (520)
T ss_pred HHHHHH
Confidence 333333
No 93
>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.18 E-value=0.46 Score=37.42 Aligned_cols=54 Identities=17% Similarity=0.255 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--HHHHHHHHHHHHhh
Q psy2889 109 LYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKIT--IEVNSSLLNQLKIE 162 (163)
Q Consensus 109 ~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~--~~~~~~li~~~i~~ 162 (163)
...-........+.....+..++.++++.++.++|+..+. ++.-..+|.+.+..
T Consensus 97 ~~~li~~~~~~~~~~~~~~e~qLv~lvl~ia~~Vi~~~~~~~~~~ll~~v~e~L~~ 152 (234)
T COG1317 97 LAKLIAEFQAELEALKEVVEKQLVQLVLEIARKVIGKELELDPEALLAAVREALEE 152 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCHHHHHHHHHHHHHh
Confidence 3344444555566666688899999999999999998774 46666777766654
No 94
>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species []. The function of this family is unclear.; GO: 0009877 nodulation
Probab=96.10 E-value=0.46 Score=36.68 Aligned_cols=95 Identities=12% Similarity=0.046 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2889 66 KRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNN 145 (163)
Q Consensus 66 ~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~ 145 (163)
.+..+-+..|+.++.+|...|+..-+..+..--.+...+........-.+--.+....+..|.+++.+|++.++.+|||.
T Consensus 30 ~da~~~~aAA~~~A~~ir~~Ar~ayE~~rarGyeeG~~~g~e~~A~llaqa~a~v~r~~a~LE~~l~~LVl~~Vr~ILg~ 109 (207)
T PF06635_consen 30 RDAAAFLAAARREAQRIREWARAAYERERARGYEEGRRAGAEQAARLLAQATAEVARYLAGLEQELAELVLEIVRKILGE 109 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455677888888888888888887777766666554433333333233344455666778899999999999999997
Q ss_pred hcCHHHHHHHHHHHH
Q psy2889 146 KITIEVNSSLLNQLK 160 (163)
Q Consensus 146 ~i~~~~~~~li~~~i 160 (163)
-=+.+.-.+.+...|
T Consensus 110 fd~~ell~r~vr~Al 124 (207)
T PF06635_consen 110 FDPDELLVRAVRQAL 124 (207)
T ss_pred CChHHHHHHHHHHHH
Confidence 655555555554444
No 95
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=96.09 E-value=0.54 Score=37.37 Aligned_cols=103 Identities=18% Similarity=0.116 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Q psy2889 41 DDRKKKIADILAAANSEK----EKVSYDRKRIQKELIATHEENKNRINLTEKQCKLI--------IEKSKKKATEEANII 108 (163)
Q Consensus 41 ~~R~~~I~~~l~~A~~~~----~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~--------~~~~~~~A~~e~~~~ 108 (163)
.+++..+.+.-.+|..-. .+++....+.+..+.+++.++.+++++|+.++-.. ........-.++..+
T Consensus 40 ~~~~~~l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e~A~~eGy~eG~~~G~~e~~~~~~~~i~~a~~i 119 (255)
T TIGR03825 40 QEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQEAKQEGYEAGFQAGESEALSIYQSTIDEANAI 119 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444544444444332 33334444444445666667777777666652110 001111112234455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 109 LYNARVEIIKQINIARENLHNEIVNLAIKSAEKIL 143 (163)
Q Consensus 109 ~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll 143 (163)
+..++.......+.+..++-.-+..+|-.+..+-|
T Consensus 120 ~~~a~~~~~~~l~~~e~el~~La~~iAeKIi~~el 154 (255)
T TIGR03825 120 VEEAKDDYEEKIESAQPLIIELACALAEKVIGVSL 154 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66676666666667777777777777766666655
No 96
>KOG3976|consensus
Probab=95.65 E-value=0.82 Score=36.05 Aligned_cols=60 Identities=18% Similarity=0.034 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 16 SHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIAT 75 (163)
Q Consensus 16 ~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a 75 (163)
+..++|++|+.+..+.+.|.+.++.+++-++|.+.++.+.+..-++-...-+.++.+...
T Consensus 99 ~~~~s~lgl~~~~~k~~g~ai~~~adk~~~k~~~~~~~arq~~ik~i~d~id~~~sqq~~ 158 (247)
T KOG3976|consen 99 ISTLSFLGLTGLAIKKLGPAIADWADKLIEKILSQLEEARQAHIKAISDAIDTEKSQQAL 158 (247)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHH
Confidence 567899999999999999999999999999999999999887766655555555555443
No 97
>KOG1772|consensus
Probab=95.12 E-value=0.68 Score=31.91 Aligned_cols=30 Identities=7% Similarity=0.038 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 114 VEIIKQINIARENLHNEIVNLAIKSAEKIL 143 (163)
Q Consensus 114 ~~i~~e~~~a~~~l~~~i~~la~~~a~kll 143 (163)
.+++.+...-..+|+..+....-++...+|
T Consensus 71 ~~~e~~t~~ki~~lk~~~~k~~~~Vv~~LL 100 (108)
T KOG1772|consen 71 KRLEQETDDKIAGLKTSAQKNSDDVVDMLL 100 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 334444444444444444444444444444
No 98
>PRK00106 hypothetical protein; Provisional
Probab=95.04 E-value=2.3 Score=37.57 Aligned_cols=54 Identities=11% Similarity=0.015 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 67 RIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQI 120 (163)
Q Consensus 67 e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~ 120 (163)
+.++.+.+|+.+++.++++|..+++....+...++++++.+...+.+.++..++
T Consensus 43 ~A~~IleeAe~eAe~I~keA~~EAke~~ke~~lEaeeEi~~~R~ElEkel~eEr 96 (535)
T PRK00106 43 EAVNLRGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQEFKSER 96 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333555667777777777777777777777777777777666666665553333
No 99
>PF02108 FliH: Flagellar assembly protein FliH; InterPro: IPR018035 This entry represents a region found in the flagellar assembly protein FliH, as well as in type III secretion system protein HrpE. Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export []. The sequence of fliH has been deduced and shown to encode a protein of molecular mass of 25,782 Da. Bacterial HrpE proteins are belived to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) [].
Probab=94.56 E-value=0.42 Score=33.26 Aligned_cols=54 Identities=24% Similarity=0.279 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--HHHHHHHHHHHH
Q psy2889 107 IILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKIT--IEVNSSLLNQLK 160 (163)
Q Consensus 107 ~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~--~~~~~~li~~~i 160 (163)
..+...-..++........+++.++.+++..+|+++++..++ ++.-..++.+.+
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~iae~vi~~~l~~~~~~i~~~i~~al 60 (128)
T PF02108_consen 5 AELEQLLEELEEALQELLEELEQELVELALAIAEKVIGRELEEDPEAILNLIREAL 60 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 344556666777788888889999999999999999998875 555556666655
No 100
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=94.34 E-value=1.5 Score=32.09 Aligned_cols=13 Identities=8% Similarity=0.184 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q psy2889 81 NRINLTEKQCKLI 93 (163)
Q Consensus 81 ~ii~~A~~~a~~~ 93 (163)
+|+++|+.+|+.+
T Consensus 17 ~il~~A~~~a~~i 29 (166)
T TIGR02499 17 AILAAARQRAEAI 29 (166)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 101
>PRK13386 fliH flagellar assembly protein H; Provisional
Probab=94.27 E-value=2.1 Score=33.70 Aligned_cols=55 Identities=13% Similarity=0.202 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CHHHHHHHHHHHHhhC
Q psy2889 109 LYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKI--TIEVNSSLLNQLKIEL 163 (163)
Q Consensus 109 ~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i--~~~~~~~li~~~i~~l 163 (163)
+......++........+++..+.+||..+|+++++..+ +|+.--.+|.+.|+.|
T Consensus 102 Le~L~e~le~~l~~~~~~~~~~ll~La~~iA~~vi~~el~~~p~~il~~v~eaL~~l 158 (236)
T PRK13386 102 LGALRQQLERYLAEYEQQQRDELLDLVEKVTRQVIRCELTLQPQQILALVEETLAAL 158 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 344445555666666777888999999999999999988 5777778888877653
No 102
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.06 E-value=2.6 Score=38.87 Aligned_cols=89 Identities=15% Similarity=0.131 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 36 LIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVE 115 (163)
Q Consensus 36 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~ 115 (163)
-..++......+..-++.-+..+.+.+....+.+..+.+++....+ +++...+.+....+++.+|+.++.+++.+++.+
T Consensus 502 A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~-l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~ 580 (771)
T TIGR01069 502 AKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKE-LEQEMEELKERERNKKLELEKEAQEALKALKKE 580 (771)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666666666655444333 444555566667777777777777777777776
Q ss_pred HHHHHHHHHH
Q psy2889 116 IIKQINIARE 125 (163)
Q Consensus 116 i~~e~~~a~~ 125 (163)
++.-..+.++
T Consensus 581 ~~~~i~~lk~ 590 (771)
T TIGR01069 581 VESIIRELKE 590 (771)
T ss_pred HHHHHHHHHh
Confidence 6665555443
No 103
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=93.75 E-value=1.3 Score=29.33 Aligned_cols=60 Identities=17% Similarity=0.152 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 15 HSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIAT 75 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a 75 (163)
+.-.+.|++|++++.+++ +.+.+.+++=...+..--.+......++.....+.+..+.+.
T Consensus 4 lI~Aiaf~vLvi~l~~~l-~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv 63 (90)
T PF06103_consen 4 LIAAIAFAVLVIFLIKVL-KKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDV 63 (90)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777665543 334445554444444444444444444444444444444443
No 104
>PRK15322 invasion protein OrgB; Provisional
Probab=93.55 E-value=2.7 Score=32.42 Aligned_cols=92 Identities=8% Similarity=0.090 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2889 67 RIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNK 146 (163)
Q Consensus 67 e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~ 146 (163)
-.+..+.+|+.+|.+|+.+|+.+++.++..+..+.-..- +.++...++.-...-. .+.....+-..+-+..++...
T Consensus 13 ~a~~l~~qA~~kA~~ii~qA~~eaE~ir~~A~~~GYq~G---l~qa~~~la~~~a~~~-~l~~~l~~~ie~~~r~lls~~ 88 (210)
T PRK15322 13 SAERLEQQARRRAKRILRQAEEEAETLRMYAYQEGYEQG---MIDALQQVAAYLTDNQ-TMAWKWMEKIQIYARELFSAA 88 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 344556778888888888888888888877766544332 3444444443333222 122233333344566777777
Q ss_pred cC-HHHHHHHHHHHHhh
Q psy2889 147 IT-IEVNSSLLNQLKIE 162 (163)
Q Consensus 147 i~-~~~~~~li~~~i~~ 162 (163)
+| |+.--.+++.++.+
T Consensus 89 Ld~pd~LL~~le~Wl~~ 105 (210)
T PRK15322 89 VDHPETLLTVLDEWLRD 105 (210)
T ss_pred ccCHHHHHHHHHHHHHh
Confidence 76 67777788877764
No 105
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=93.37 E-value=6.6 Score=36.34 Aligned_cols=88 Identities=15% Similarity=0.179 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 36 LIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVE 115 (163)
Q Consensus 36 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~ 115 (163)
-..++.+....+..-+...++.+.+.++...+.+..+.+++....+ ++....+.+...++++.++++++.+++.+++.+
T Consensus 507 A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~-l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~ 585 (782)
T PRK00409 507 AKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEE-LEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKE 585 (782)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666677777777777766666666666666655444333 334444556666667777777777777777766
Q ss_pred HHHHHHHHH
Q psy2889 116 IIKQINIAR 124 (163)
Q Consensus 116 i~~e~~~a~ 124 (163)
++.-..+.+
T Consensus 586 ~~~~i~~lk 594 (782)
T PRK00409 586 ADEIIKELR 594 (782)
T ss_pred HHHHHHHHH
Confidence 555444444
No 106
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=93.17 E-value=1.5 Score=33.50 Aligned_cols=21 Identities=10% Similarity=-0.110 Sum_probs=1.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHH
Q psy2889 16 SHGIRRTIKCCFTKKFIWPPL 36 (163)
Q Consensus 16 ~~~i~Flil~~~l~~~l~~pi 36 (163)
|.++..+|++++++..+.+++
T Consensus 38 Wyil~~~I~ly~l~qkl~~~~ 58 (190)
T PF06936_consen 38 WYILFGCILLYLLWQKLSPSF 58 (190)
T ss_dssp ------------------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 544444444444444444444
No 107
>PF01741 MscL: Large-conductance mechanosensitive channel, MscL; InterPro: IPR001185 Mechanosensitive ion channels (MscL) play a critical role in transducing physical stresses at the cell membrane into an electrochemical response. MscL is a protein which forms a channel organised as a homopentamer, with each subunit containing two transmembrane regions []. Prokaryotes harbor a large-conductance mechanosensitive channel (gene mscL) that opens in response to stretch forces in the membrane lipid bilayer and may participate in the regulation of osmotic pressure changes within the cell [].; GO: 0005216 ion channel activity, 0006810 transport, 0016021 integral to membrane; PDB: 3HZQ_A 2OAR_A.
Probab=92.93 E-value=0.29 Score=35.06 Aligned_cols=32 Identities=22% Similarity=0.095 Sum_probs=24.6
Q ss_pred CchHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy2889 10 ADTGA-HSHGIRRTIKCCFTKKFIWPPLIKALDD 42 (163)
Q Consensus 10 ~~~~~-~~~~i~Flil~~~l~~~l~~pi~~~l~~ 42 (163)
+.++. +-.+|||+|..+++ +++.+|+.++..+
T Consensus 68 i~yG~Fl~a~I~FlIiA~vv-Flivk~~nk~~~~ 100 (128)
T PF01741_consen 68 IPYGAFLNALINFLIIAFVV-FLIVKPINKLKKK 100 (128)
T ss_dssp E-HCHHHHHHHHHHHHHHHH-HHCHHHHHHCHHT
T ss_pred eeHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhh
Confidence 44554 78899999999999 7788999888433
No 108
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=92.91 E-value=3.3 Score=31.68 Aligned_cols=46 Identities=15% Similarity=0.042 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 13 GAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEK 58 (163)
Q Consensus 13 ~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~ 58 (163)
.++..+|.|++-|++.+++....+...-..-..-+.+.-.+|+..+
T Consensus 6 ~i~~~~vG~~~G~~~~~~~~~~~~~~A~~~A~~i~~~A~~eAe~~~ 51 (201)
T PF12072_consen 6 AIVALIVGIGIGYLVRKKINRKKLEQAEKEAEQILEEAEREAEAIK 51 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888888777777777766666666666666555433
No 109
>PF05933 Fun_ATP-synt_8: Fungal ATP synthase protein 8 (A6L); InterPro: IPR009230 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit 8 found in the F0 complex of mitochondrial F-ATPases from fungi. This subunit appears to be an integral component of the stator stalk in yeast mitochondrial F-ATPases []. The stator stalk is anchored in the membrane, and acts to prevent futile rotation of the ATPase subunits relative to the rotor during coupled ATP synthesis/hydrolysis. This subunit differs in sequence between fungi, Metazoa (IPR001421 from INTERPRO) and plants (IPR003319 from INTERPRO). More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=92.09 E-value=0.66 Score=27.40 Aligned_cols=40 Identities=13% Similarity=0.024 Sum_probs=30.8
Q ss_pred cccccCchHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy2889 5 YAIQSADTGA---HSHGIRRTIKCCFTKKFIWPPLIKALDDRK 44 (163)
Q Consensus 5 ~~~l~~~~~~---~~~~i~Flil~~~l~~~l~~pi~~~l~~R~ 44 (163)
||++.|=+-+ .|.++.+.+++++..++..|.+.+..-.|-
T Consensus 1 MPQLvPFyF~Nql~~~f~~l~il~yl~SkyiLP~~lrl~~sR~ 43 (48)
T PF05933_consen 1 MPQLVPFYFVNQLSFGFLILSILLYLFSKYILPRILRLFVSRM 43 (48)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666664432 688888899999999999999988776663
No 110
>PRK12705 hypothetical protein; Provisional
Probab=91.88 E-value=8.4 Score=33.90 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 113 RVEIIKQINIARENLHNEIVNLAIKSAEKIL 143 (163)
Q Consensus 113 ~~~i~~e~~~a~~~l~~~i~~la~~~a~kll 143 (163)
+.+...+.....++...++..-|-..|..++
T Consensus 152 ~~~~~~e~~~~i~~~e~~~~~~a~~~A~~ii 182 (508)
T PRK12705 152 DAELEEEKAQRVKKIEEEADLEAERKAQNIL 182 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344443333333333333333
No 111
>KOG1772|consensus
Probab=91.79 E-value=3.1 Score=28.72 Aligned_cols=53 Identities=13% Similarity=0.171 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 71 ELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIA 123 (163)
Q Consensus 71 ~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a 123 (163)
+|-.|..+|.+++++|++.-.....++..+|..|++....+-..+.......+
T Consensus 10 QLLqAEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie~yr~qrE~efk~ke~~~ 62 (108)
T KOG1772|consen 10 QLLQAEKRAAEKVEEARKRKLRRLKQAKEEAEKEIEEYRSQREKEFKEKESAA 62 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777776666666666666666655555544444443333
No 112
>PRK09098 type III secretion system protein HrpB; Validated
Probab=91.49 E-value=5.8 Score=31.24 Aligned_cols=37 Identities=5% Similarity=0.147 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 62 SYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSK 98 (163)
Q Consensus 62 ~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~ 98 (163)
.+..++.+..+.+|+.++++|+++|+.+.+..+++-.
T Consensus 46 a~Ar~~A~~Il~~A~~~A~~I~~~A~~e~e~~~~~Gy 82 (233)
T PRK09098 46 AAARARAERIVAEARAQAEAILEAARREADRSARRGY 82 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666777777777777777776665554443
No 113
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=91.31 E-value=4.4 Score=31.00 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=3.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q psy2889 19 IRRTIKCCFTKKFIWPPLIKALDD 42 (163)
Q Consensus 19 i~Flil~~~l~~~l~~pi~~~l~~ 42 (163)
.=|+|+.+++.+|+|+.+..-+..
T Consensus 37 GWyil~~~I~ly~l~qkl~~~~r~ 60 (190)
T PF06936_consen 37 GWYILFGCILLYLLWQKLSPSFRS 60 (190)
T ss_dssp -------------------HHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335677778889999999888743
No 114
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=89.45 E-value=5.6 Score=27.84 Aligned_cols=49 Identities=12% Similarity=0.187 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 71 ELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQ 119 (163)
Q Consensus 71 ~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e 119 (163)
.|-.|..+|.+|+..||..-...+.++..+|+.|++....+-..+....
T Consensus 10 ~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~yr~~kE~ef~~~ 58 (113)
T TIGR01147 10 QLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQREKEFKEF 58 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555777777777777766555555555555555555554444444443
No 115
>COG1970 MscL Large-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=89.42 E-value=1.1 Score=32.02 Aligned_cols=34 Identities=15% Similarity=-0.048 Sum_probs=27.2
Q ss_pred ccCchHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy2889 8 QSADTGA-HSHGIRRTIKCCFTKKFIWPPLIKALDD 42 (163)
Q Consensus 8 l~~~~~~-~~~~i~Flil~~~l~~~l~~pi~~~l~~ 42 (163)
..++++. +..+|||+|+-|.+ .++.+|+.+..+.
T Consensus 66 ~~i~yG~Fi~~vinFlIiAf~i-Fl~Vk~inkl~~~ 100 (130)
T COG1970 66 VVIAYGAFIQAVINFLIIAFAI-FLVVKAINKLRRK 100 (130)
T ss_pred eeeeHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3466765 78899999999999 7788999887765
No 116
>PRK06397 V-type ATP synthase subunit H; Validated
Probab=88.75 E-value=5.8 Score=27.05 Aligned_cols=71 Identities=20% Similarity=0.292 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 38 KALDDRKKKIADILAAANSEKE-KVSYDRKRIQKELIATHEENK----NRINLTEKQCKLIIEKSKKKATEEANII 108 (163)
Q Consensus 38 ~~l~~R~~~I~~~l~~A~~~~~-ea~~~~~e~e~~L~~a~~ea~----~ii~~A~~~a~~~~~~~~~~A~~e~~~~ 108 (163)
+++.+....+...+..-...++ .......+|+..+.....+.. .-+.++|++++.-..+++..|++++..+
T Consensus 13 kiIKeKE~S~dkEI~~~k~eqe~~iKEa~~k~ee~~~kteeE~~~~Y~~~l~e~RkeaE~ka~eiI~~Akq~As~i 88 (111)
T PRK06397 13 KIIKEKEESIDKEIANIKNEQENEIKEAKSKYEEKAKKTEEESLNMYNAALMEARKEAEKKAVEIINKAKQEASLI 88 (111)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544443222 234444455555544443332 2344444444444444444444444443
No 117
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=88.75 E-value=4.9 Score=30.43 Aligned_cols=33 Identities=15% Similarity=0.146 Sum_probs=25.2
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy2889 9 SADTGAHSHGIRRTIKCCFTKKFIWPPLIKALD 41 (163)
Q Consensus 9 ~~~~~~~~~~i~Flil~~~l~~~l~~pi~~~l~ 41 (163)
+|-=.-+..++.++++++++|..+|.|+....+
T Consensus 33 s~REq~ll~~~g~vL~l~i~Y~~iWqPl~~~~~ 65 (178)
T PRK09731 33 SPREKGMLLAAVVFLFSVGYYVLIWQPLSERIE 65 (178)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 333344667788899999999999999988543
No 118
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=88.71 E-value=1.1 Score=30.50 Aligned_cols=35 Identities=9% Similarity=0.040 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy2889 15 HSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIAD 49 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~ 49 (163)
+..++-|++++.++|++++.|=.+=+.+|++.+.+
T Consensus 9 ~~~ll~~vl~~~ifyFli~RPQrKr~K~~~~ml~s 43 (97)
T COG1862 9 LVLLLPLVLIFAIFYFLIIRPQRKRMKEHQELLNS 43 (97)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHh
Confidence 56667777777777778999999988888887643
No 119
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=87.27 E-value=6.4 Score=25.89 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHH
Q psy2889 18 GIRRTIKCCFTKKFIWPPLIKA 39 (163)
Q Consensus 18 ~i~Flil~~~l~~~l~~pi~~~ 39 (163)
++.+.+-+.+|..|+.+|+.+.
T Consensus 3 ~lI~Aiaf~vLvi~l~~~l~~l 24 (90)
T PF06103_consen 3 GLIAAIAFAVLVIFLIKVLKKL 24 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788889999999999988
No 120
>PRK11637 AmiB activator; Provisional
Probab=86.67 E-value=19 Score=30.68 Aligned_cols=48 Identities=17% Similarity=0.130 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 35 PLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNR 82 (163)
Q Consensus 35 pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~i 82 (163)
+...-..++.+.+...+...++...+.+..+.+.+..+.....+....
T Consensus 40 ~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~ 87 (428)
T PRK11637 40 AHASDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQA 87 (428)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456666666666666666666655566655555555555544433
No 121
>PRK13955 mscL large-conductance mechanosensitive channel; Provisional
Probab=84.48 E-value=2.5 Score=30.37 Aligned_cols=28 Identities=11% Similarity=-0.166 Sum_probs=22.2
Q ss_pred chHH-HHHHHHHHHHHHHHHHHhHHHHHHH
Q psy2889 11 DTGA-HSHGIRRTIKCCFTKKFIWPPLIKA 39 (163)
Q Consensus 11 ~~~~-~~~~i~Flil~~~l~~~l~~pi~~~ 39 (163)
.++. +..+|||+|+-+++ +++.+|+.++
T Consensus 65 ~yG~fl~avInFlIiA~vv-F~ivk~~nk~ 93 (130)
T PRK13955 65 MYGNFIQTIFDFLIIAASI-FMFVKVFNKL 93 (130)
T ss_pred eHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4454 78899999999999 5667888875
No 122
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=83.22 E-value=22 Score=28.50 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 60 KVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATE 103 (163)
Q Consensus 60 ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ 103 (163)
.......+....+.+++.++..++.+|+.+++.+..+...++..
T Consensus 71 ~~~~~~~~a~~~l~~~~~ea~~~l~~a~~q~e~~~~ea~~e~e~ 114 (281)
T PRK06669 71 IVEAAEEEAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELER 114 (281)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888999999999999999998888887776544443
No 123
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=82.92 E-value=49 Score=32.27 Aligned_cols=47 Identities=13% Similarity=0.167 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHH
Q psy2889 105 ANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEV 151 (163)
Q Consensus 105 ~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~ 151 (163)
...-.......|..+.+....+...++..+-...-.++=++-+|+..
T Consensus 726 ~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~~~ 772 (1201)
T PF12128_consen 726 LEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDPER 772 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 34444445555666666666666666666666666677666666643
No 124
>KOG2302|consensus
Probab=82.77 E-value=11 Score=36.18 Aligned_cols=65 Identities=12% Similarity=0.021 Sum_probs=37.0
Q ss_pred cccccCchHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 5 YAIQSADTGAHSHGIRRTIK--CCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIAT 75 (163)
Q Consensus 5 ~~~l~~~~~~~~~~i~Flil--~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a 75 (163)
.|.++-|++++.-+|+|+++ +|+|+-|+---+.++.+-|+. .++++++..-++.+...++++.+|
T Consensus 1352 qPI~nhnpwmllYfIsfllIvsffVlnmfVgvvvenfhKcrqh------qe~EeArRreEKrLrrlekkrR~A 1418 (1956)
T KOG2302|consen 1352 QPILNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQH------QEAEEARRREEKRLRRLEKKRRAA 1418 (1956)
T ss_pred eccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36666666654444544433 345556655556666666654 344444455566666666666655
No 125
>PRK13953 mscL large-conductance mechanosensitive channel; Provisional
Probab=82.20 E-value=3.2 Score=29.58 Aligned_cols=29 Identities=14% Similarity=-0.043 Sum_probs=22.4
Q ss_pred chHH-HHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy2889 11 DTGA-HSHGIRRTIKCCFTKKFIWPPLIKAL 40 (163)
Q Consensus 11 ~~~~-~~~~i~Flil~~~l~~~l~~pi~~~l 40 (163)
.++. +-.++||+|+-+++ +++.+|+.++-
T Consensus 65 ~yG~fl~avinFlIia~vv-F~~vk~~nk~~ 94 (125)
T PRK13953 65 QYGAFIQSIVDFLIIAFAI-FIFVKVLTSFI 94 (125)
T ss_pred eHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3443 78899999999988 66788888763
No 126
>PRK12704 phosphodiesterase; Provisional
Probab=82.16 E-value=35 Score=30.12 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2889 110 YNARVEIIKQINIARENLHNEIVNLAIKSAEKILN 144 (163)
Q Consensus 110 ~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~ 144 (163)
++.+.+...+.....++...++..-|-..|.++|.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~i~~ 195 (520)
T PRK12704 161 EKVEEEARHEAAVLIKEIEEEAKEEADKKAKEILA 195 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444433
No 127
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=82.07 E-value=18 Score=26.76 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy2889 33 WPPLIKALDDRKKKIADILAAA 54 (163)
Q Consensus 33 ~~pi~~~l~~R~~~I~~~l~~A 54 (163)
...+.+-++.++..+...+..+
T Consensus 24 Ir~lq~~~e~k~~~l~e~l~~~ 45 (175)
T COG4741 24 IRSLQGKVESKARELEETLQKA 45 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666666666666655
No 128
>PRK06032 fliH flagellar assembly protein H; Validated
Probab=81.42 E-value=21 Score=27.14 Aligned_cols=52 Identities=13% Similarity=0.178 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--HH-HHHHHHHHHHhh
Q psy2889 111 NARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKIT--IE-VNSSLLNQLKIE 162 (163)
Q Consensus 111 ~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~--~~-~~~~li~~~i~~ 162 (163)
..-..+..........++.++.+|++.+++|+++..++ +. .-..++.+.+..
T Consensus 69 ~~~~~l~~~~~~~~~~~~~~lv~La~~iarkvi~~~l~~~p~a~v~~~v~eal~~ 123 (199)
T PRK06032 69 QAAAGLLAALAAVEHEMETEAADLALAVARKIAGAALAAEPLAEITAAVRDCLRH 123 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 34445666667777788999999999999999999885 43 245666666543
No 129
>KOG1962|consensus
Probab=81.00 E-value=24 Score=27.51 Aligned_cols=65 Identities=8% Similarity=-0.006 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 19 IRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLT 86 (163)
Q Consensus 19 i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A 86 (163)
..|.++++++..-++.-+.....-|.. .....+.+..+..++..-. ++++......+.....++.
T Consensus 103 sGf~LFL~lvI~R~~~ll~~l~~l~~~--~~~~~~~~~lk~~~~~~~~-~~~~~~~~~~~~~kL~~el 167 (216)
T KOG1962|consen 103 SGFVLFLSLVIRRLHTLLRELATLRAN--EKAMKENEALKKQLENSSK-LEEENDKLKADLEKLETEL 167 (216)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHhhhcccc-hhhhHHHHHhhHHHHHHHH
Confidence 348888887777778778887777776 2333333333333333222 3444444444444444433
No 130
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=80.65 E-value=40 Score=29.75 Aligned_cols=33 Identities=21% Similarity=0.147 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2889 112 ARVEIIKQINIARENLHNEIVNLAIKSAEKILN 144 (163)
Q Consensus 112 a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~ 144 (163)
.+.+...+.....++...++..-|-..|.++|.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~i~~ 189 (514)
T TIGR03319 157 VEEEARHEAAKLIKEIEEEAKEEADKKAKEILA 189 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444433
No 131
>TIGR00220 mscL large conductance mechanosensitive channel protein. Protein encodes a channel which opens in response to a membrane stretch force. Probably serves as an osmotic gauge. Carboxy terminus tends to be more divergent across species with a high degree of sequence conservation found at the N-terminus.
Probab=79.16 E-value=4.7 Score=28.82 Aligned_cols=28 Identities=18% Similarity=0.010 Sum_probs=21.7
Q ss_pred chHH-HHHHHHHHHHHHHHHHHhHHHHHHH
Q psy2889 11 DTGA-HSHGIRRTIKCCFTKKFIWPPLIKA 39 (163)
Q Consensus 11 ~~~~-~~~~i~Flil~~~l~~~l~~pi~~~ 39 (163)
+++. +..+|||+|.-++++ ++.+|+.+.
T Consensus 67 ~yG~fl~avInFlIiA~vvf-~~vk~~~k~ 95 (127)
T TIGR00220 67 KYGEFIQNIINFLIIAFAIF-MIIKAINKL 95 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3454 778999999999994 667888765
No 132
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=78.99 E-value=0.63 Score=32.73 Aligned_cols=48 Identities=25% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 69 QKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQI 120 (163)
Q Consensus 69 e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~ 120 (163)
...|..|+..+.++...|..+|.. ++..|+.++..++..|...+....
T Consensus 66 ~~~l~~aq~~a~~~~~~A~~eA~~----i~~~A~~~a~~i~~~A~~~~~~l~ 113 (131)
T PF05103_consen 66 QRALIQAQETADEIKAEAEEEAEE----IIEEAQKEAEEIIEEARAEAERLR 113 (131)
T ss_dssp ----------------------------------------------------
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333 333344455555555555544443
No 133
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=78.45 E-value=22 Score=25.55 Aligned_cols=45 Identities=9% Similarity=0.089 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 97 SKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEK 141 (163)
Q Consensus 97 ~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~k 141 (163)
-+..-..+..+.......++..........+...+......++.+
T Consensus 84 ~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~i~~~v~~~a~~ 128 (158)
T PF03938_consen 84 ELQQKEQELQQFQQQAQQQLQQEEQELLQPIQKKINKAVEEYAKE 128 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566667777778888888888888888888777777664
No 134
>PRK13954 mscL large-conductance mechanosensitive channel; Provisional
Probab=78.24 E-value=4.2 Score=28.74 Aligned_cols=28 Identities=11% Similarity=-0.185 Sum_probs=21.6
Q ss_pred chHH-HHHHHHHHHHHHHHHHHhHHHHHHH
Q psy2889 11 DTGA-HSHGIRRTIKCCFTKKFIWPPLIKA 39 (163)
Q Consensus 11 ~~~~-~~~~i~Flil~~~l~~~l~~pi~~~ 39 (163)
+++. +-.++||+|+-+++ +++.+|+.+.
T Consensus 62 ~yG~fl~avinFlIiA~vv-F~~vk~~~k~ 90 (119)
T PRK13954 62 KYGLFIQSVIDFIIIAFAL-FIFVKIANTL 90 (119)
T ss_pred cHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3444 77899999999988 5677888775
No 135
>PRK00567 mscL large-conductance mechanosensitive channel; Reviewed
Probab=77.33 E-value=4.8 Score=29.03 Aligned_cols=29 Identities=14% Similarity=-0.035 Sum_probs=23.6
Q ss_pred CchHH-HHHHHHHHHHHHHHHHHhHHHHHHH
Q psy2889 10 ADTGA-HSHGIRRTIKCCFTKKFIWPPLIKA 39 (163)
Q Consensus 10 ~~~~~-~~~~i~Flil~~~l~~~l~~pi~~~ 39 (163)
++++. +-.+|||+|+-+++ +++.+|+.+.
T Consensus 71 i~yG~fl~avI~FlIia~vv-F~ivk~~n~~ 100 (134)
T PRK00567 71 INYGVFINAVIDFLIIAFAI-FLLVKLINKL 100 (134)
T ss_pred eeHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 45564 78899999999999 6788888875
No 136
>PF04612 T2SM: Type II secretion system (T2SS), protein M; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport; PDB: 1UV7_A.
Probab=77.24 E-value=0.76 Score=33.49 Aligned_cols=48 Identities=8% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 14 AHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKV 61 (163)
Q Consensus 14 ~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea 61 (163)
.+..+..+++++++++.++|.|+.+..+.-+..+...-.........+
T Consensus 17 ~ll~~~~~~l~~~l~~~~~~~P~~~~~~~~~~~l~~~~~~l~~l~~~~ 64 (160)
T PF04612_consen 17 RLLLVLGVVLLLALLYLLLWQPLLERRDQLQQQLQQLQQQLAWLQQQA 64 (160)
T ss_dssp ------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777788888899999998888776666655544444443333
No 137
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=76.93 E-value=7.3 Score=26.88 Aligned_cols=32 Identities=19% Similarity=0.060 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy2889 15 HSHGIRRTIKCCFTKKFIWPPLIKALDDRKKK 46 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~ 46 (163)
+..++-+++++.++|.+.+.|-.+--+++++.
T Consensus 18 ~~~ll~lvii~~i~yf~~~RpqkK~~k~~~~~ 49 (106)
T PRK05585 18 LSSLLPLVVFFAIFYFLIIRPQQKRQKEHKKM 49 (106)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34444444555555666778877666555443
No 138
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=76.41 E-value=49 Score=28.43 Aligned_cols=38 Identities=21% Similarity=0.192 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 89 QCKLIIEKSKKKATEEANIILYNARVEIIKQINIAREN 126 (163)
Q Consensus 89 ~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~ 126 (163)
+|+....+++..|+.++++++..|+..-+....+|..+
T Consensus 267 eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGd 304 (419)
T PRK10930 267 EAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGE 304 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44444455555556666666666555544444444443
No 139
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=76.40 E-value=1.3 Score=31.07 Aligned_cols=40 Identities=30% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 88 KQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENL 127 (163)
Q Consensus 88 ~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l 127 (163)
..++....++...|..+++.++..|+.+...-...+..++
T Consensus 70 ~~aq~~a~~~~~~A~~eA~~i~~~A~~~a~~i~~~A~~~~ 109 (131)
T PF05103_consen 70 IQAQETADEIKAEAEEEAEEIIEEAQKEAEEIIEEARAEA 109 (131)
T ss_dssp ----------------------------------------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555556666666666666666665555554444
No 140
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=76.21 E-value=6.3 Score=25.97 Aligned_cols=26 Identities=15% Similarity=0.038 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy2889 19 IRRTIKCCFTKKFIWPPLIKALDDRK 44 (163)
Q Consensus 19 i~Flil~~~l~~~l~~pi~~~l~~R~ 44 (163)
+-|++++.++|.+.+.|-.+--.+++
T Consensus 7 ~~~vv~~~i~yf~~~rpqkK~~k~~~ 32 (84)
T TIGR00739 7 LPLVLIFLIFYFLIIRPQRKRRKAHK 32 (84)
T ss_pred HHHHHHHHHHHHheechHHHHHHHHH
Confidence 34444455666677788765544443
No 141
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=75.75 E-value=37 Score=26.71 Aligned_cols=39 Identities=21% Similarity=0.124 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 88 KQCKLIIEKSKKKATEEANIILYNARVEIIKQINIAREN 126 (163)
Q Consensus 88 ~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~ 126 (163)
.+++...+..+.+|+.+++++...|+..-+....++..+
T Consensus 197 ~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~~ 235 (266)
T cd03404 197 NEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGE 235 (266)
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHHH
Confidence 333444444555566666666666555555555554433
No 142
>PRK00106 hypothetical protein; Provisional
Probab=75.62 E-value=58 Score=28.94 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 112 ARVEIIKQINIARENLHNEIVNLAIKSAEKIL 143 (163)
Q Consensus 112 a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll 143 (163)
.+.+...+.....++...++..-|-..|..+|
T Consensus 178 ~~~~~~~~~~~~i~~~e~~a~~~a~~~a~~ii 209 (535)
T PRK00106 178 TENKLTHEIATRIREAEREVKDRSDKMAKDLL 209 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 143
>MTH00036 ATP8 ATP synthase F0 subunit 8; Validated
Probab=75.28 E-value=5.9 Score=23.98 Aligned_cols=22 Identities=0% Similarity=-0.244 Sum_probs=13.6
Q ss_pred cccccCchHHHHHHHHHHHHHH
Q psy2889 5 YAIQSADTGAHSHGIRRTIKCC 26 (163)
Q Consensus 5 ~~~l~~~~~~~~~~i~Flil~~ 26 (163)
||+++|.+.++..++..++++.
T Consensus 1 MPQLd~s~Wf~~~~~~W~~l~~ 22 (54)
T MTH00036 1 MPQLDFTWWLFNFLLAWSLVFI 22 (54)
T ss_pred CCCCcchHHHHHHHHHHHHHHH
Confidence 7899998876444444444433
No 144
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=74.96 E-value=37 Score=29.17 Aligned_cols=35 Identities=14% Similarity=0.089 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 62 SYDRKRIQKELIATHEENKNRINLTEKQCKLIIEK 96 (163)
Q Consensus 62 ~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~ 96 (163)
.....+.+..+.+|+..+.+++-.|+.++..+..+
T Consensus 255 ~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~ 289 (419)
T PRK10930 255 IAARENEQQYIREAEAYTNEVQPRANGQAQRILEE 289 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555566666666666666555554443
No 145
>PRK13952 mscL large-conductance mechanosensitive channel; Provisional
Probab=74.47 E-value=6.7 Score=28.57 Aligned_cols=29 Identities=10% Similarity=-0.040 Sum_probs=22.4
Q ss_pred CchHH-HHHHHHHHHHHHHHHHHhHHHHHHH
Q psy2889 10 ADTGA-HSHGIRRTIKCCFTKKFIWPPLIKA 39 (163)
Q Consensus 10 ~~~~~-~~~~i~Flil~~~l~~~l~~pi~~~ 39 (163)
++++. +-.+|||+|+-+++ +++.+|+.+.
T Consensus 83 i~yG~fl~avInFlIiA~vv-f~ivk~~nk~ 112 (142)
T PRK13952 83 FAYGNFITVLINFLILAFII-FLMVKAINRL 112 (142)
T ss_pred chHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 44554 78899999999999 5667888764
No 146
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=74.18 E-value=9.9 Score=26.44 Aligned_cols=25 Identities=12% Similarity=-0.128 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Q psy2889 19 IRRTIKCCFTKKFIWPPLIKALDDR 43 (163)
Q Consensus 19 i~Flil~~~l~~~l~~pi~~~l~~R 43 (163)
+-|+++++++|+|+..|=.+-..++
T Consensus 8 l~lv~i~~i~yF~~iRPQkKr~K~~ 32 (109)
T PRK05886 8 LPFLLIMGGFMYFASRRQRKAMQAT 32 (109)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHH
Confidence 3344445555666677765543333
No 147
>KOG0718|consensus
Probab=73.68 E-value=28 Score=30.41 Aligned_cols=30 Identities=17% Similarity=0.105 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy2889 14 AHSHGIRRTIKCCFTKKFIWPPLIKALDDR 43 (163)
Q Consensus 14 ~~~~~i~Flil~~~l~~~l~~pi~~~l~~R 43 (163)
+||-++.=++.+|.+.+|+++|...--++|
T Consensus 377 vfya~v~P~~s~F~l~k~v~rP~~~~~k~~ 406 (546)
T KOG0718|consen 377 VFYALVFPITSYFGLKKFVLRPYLLKRKKR 406 (546)
T ss_pred hhhhhhHHHHHHHHHHHHeecHHHHhhHhH
Confidence 377777778888999999999976544433
No 148
>PRK09039 hypothetical protein; Validated
Probab=73.14 E-value=53 Score=27.32 Aligned_cols=23 Identities=13% Similarity=0.001 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Q psy2889 15 HSHGIRRTIKCCFTKKFIWPPLI 37 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~~pi~ 37 (163)
+..++.|++.+|++.-|++.--.
T Consensus 26 ll~~~~f~l~~f~~~q~fLs~~i 48 (343)
T PRK09039 26 LLLVIMFLLTVFVVAQFFLSREI 48 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888877777654433
No 149
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=73.04 E-value=27 Score=23.92 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 49 DILAAANSEKEKVSYDRKRIQKELIAT 75 (163)
Q Consensus 49 ~~l~~A~~~~~ea~~~~~e~e~~L~~a 75 (163)
..+...+...++.+......+.++...
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444433
No 150
>MTH00133 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=72.32 E-value=5.8 Score=23.89 Aligned_cols=24 Identities=0% Similarity=-0.280 Sum_probs=17.1
Q ss_pred cccccCchHHHHHHHHHHHHHHHH
Q psy2889 5 YAIQSADTGAHSHGIRRTIKCCFT 28 (163)
Q Consensus 5 ~~~l~~~~~~~~~~i~Flil~~~l 28 (163)
||+++|++-|+..+...+++++++
T Consensus 1 MPQLnp~PWf~i~l~tW~~l~~~~ 24 (55)
T MTH00133 1 MPQLNPAPWFAILVFSWLVFLTII 24 (55)
T ss_pred CCCCCCccHHHHHHHHHHHHHHHH
Confidence 689999988866666666655544
No 151
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=72.31 E-value=44 Score=26.00 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 69 QKELIATHEENKNRINLTEKQCKLIIEKSKKKA 101 (163)
Q Consensus 69 e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A 101 (163)
+.....+..++..|++.|...+..+.......|
T Consensus 80 ~~~~~~a~~ea~~il~~a~~~a~~v~~~a~~~a 112 (212)
T COG3599 80 EELKQAAEAEADDILKRASAQAQRVFGKAQYKA 112 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 334444555555555555555555444444333
No 152
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=71.88 E-value=43 Score=25.68 Aligned_cols=49 Identities=16% Similarity=0.159 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHH
Q psy2889 102 TEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIE 150 (163)
Q Consensus 102 ~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~ 150 (163)
..+....++.++...+.++.+..-+...-.=+-++++|+++++..+|.-
T Consensus 82 ~~e~~~~~e~~r~~fekekqq~~~~~t~~LwdeSi~LAEkIV~QaiDtR 130 (228)
T PRK06800 82 VQQQMKEIEAARQQFQKEQQETAYEWTELLWDQSFQLAEKIVNQAVDTR 130 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 4455666777888888888888888888899999999999999998853
No 153
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=71.72 E-value=47 Score=26.07 Aligned_cols=17 Identities=12% Similarity=0.227 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy2889 34 PPLIKALDDRKKKIADI 50 (163)
Q Consensus 34 ~pi~~~l~~R~~~I~~~ 50 (163)
-++..++...+..|...
T Consensus 103 ~~l~eil~~~R~~i~~~ 119 (261)
T TIGR01933 103 STMDDILTEGRSQIRED 119 (261)
T ss_pred CcHHHHHHhCHHHHHHH
Confidence 34555565333334333
No 154
>PF00895 ATP-synt_8: ATP synthase protein 8; InterPro: IPR001421 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit 8 found in the F0 complex of mitochondrial F-ATPases from Metazoa. This subunit appears to be an integral component of the stator stalk in yeast mitochondrial F-ATPases []. The stator stalk is anchored in the membrane, and acts to prevent futile rotation of the ATPase subunits relative to the rotor during coupled ATP synthesis/hydrolysis. This subunit may have an analogous function in Metazoa. Subunit 8 differs in sequence between Metazoa, plants (IPR003319 from INTERPRO) and fungi (IPR009230 from INTERPRO). More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=70.30 E-value=8.5 Score=22.50 Aligned_cols=10 Identities=0% Similarity=-0.376 Sum_probs=7.7
Q ss_pred cccccCchHH
Q psy2889 5 YAIQSADTGA 14 (163)
Q Consensus 5 ~~~l~~~~~~ 14 (163)
||+++|.+.+
T Consensus 1 MPQL~P~~W~ 10 (54)
T PF00895_consen 1 MPQLNPMPWF 10 (54)
T ss_pred CCCCChHHHH
Confidence 6888888765
No 155
>MTH00123 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=70.18 E-value=9.2 Score=22.85 Aligned_cols=23 Identities=0% Similarity=-0.325 Sum_probs=16.0
Q ss_pred cccccCchHHHHHHHHHHHHHHH
Q psy2889 5 YAIQSADTGAHSHGIRRTIKCCF 27 (163)
Q Consensus 5 ~~~l~~~~~~~~~~i~Flil~~~ 27 (163)
||+++|++.|+..+..-++|+.+
T Consensus 1 MPQLnp~pWf~~~l~tWl~l~~~ 23 (54)
T MTH00123 1 MPQLNPAPWFLIMLLTWLTLILI 23 (54)
T ss_pred CCCCCchHHHHHHHHHHHHHHHH
Confidence 68999998876555555555554
No 156
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=69.83 E-value=9.9 Score=26.61 Aligned_cols=21 Identities=14% Similarity=0.004 Sum_probs=10.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHH
Q psy2889 25 CCFTKKFIWPPLIKALDDRKK 45 (163)
Q Consensus 25 ~~~l~~~l~~pi~~~l~~R~~ 45 (163)
+++++||++.|=.+-..++++
T Consensus 12 ~~~i~yf~iRPQkKr~Ke~~e 32 (113)
T PRK06531 12 MLGLIFFMQRQQKKQAQERQN 32 (113)
T ss_pred HHHHHHheechHHHHHHHHHH
Confidence 333344667776554444443
No 157
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=69.70 E-value=25 Score=22.05 Aligned_cols=11 Identities=9% Similarity=-0.103 Sum_probs=4.8
Q ss_pred HHhHHHHHHHH
Q psy2889 30 KFIWPPLIKAL 40 (163)
Q Consensus 30 ~~l~~pi~~~l 40 (163)
.++...+....
T Consensus 10 ~~~~~~~~~~~ 20 (80)
T PF04977_consen 10 VFGISGYSRYY 20 (80)
T ss_pred HHhcchHHHHH
Confidence 34444444444
No 158
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=68.70 E-value=31 Score=22.80 Aligned_cols=46 Identities=7% Similarity=0.176 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 58 KEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATE 103 (163)
Q Consensus 58 ~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ 103 (163)
..+...+..+.+..+..+.........+++..+....+++...+..
T Consensus 4 ~~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~ 49 (94)
T PF05957_consen 4 KAELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAED 49 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555544444443333
No 159
>PRK15354 type III secretion system protein SsaK; Provisional
Probab=68.56 E-value=54 Score=25.55 Aligned_cols=46 Identities=9% Similarity=0.022 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 69 QKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIK 118 (163)
Q Consensus 69 e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~ 118 (163)
+..++.|+.++..|+..|..+-. .++.+++.++++++.+++.++|.
T Consensus 44 ~~il~~A~rkA~~I~q~A~~~~~----~ll~qaqqqad~L~~~~~~~~E~ 89 (224)
T PRK15354 44 HAIVSSAYRKAEKIIRDAYRYQR----EQKVEQQQELACLRKNTLEKMEV 89 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544433322 23333444444555554444443
No 160
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=67.98 E-value=8 Score=25.29 Aligned_cols=28 Identities=18% Similarity=0.036 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy2889 16 SHGIRRTIKCCFTKKFIWPPLIKALDDR 43 (163)
Q Consensus 16 ~~~i~Flil~~~l~~~l~~pi~~~l~~R 43 (163)
+.++-+++++.+++.+.+.|=.+--+++
T Consensus 3 ~~li~lv~~~~i~yf~~~rpqkk~~k~~ 30 (82)
T PF02699_consen 3 SMLIPLVIIFVIFYFLMIRPQKKQQKEH 30 (82)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhheecHHHHHHHHH
Confidence 4455555666666677788876444333
No 161
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=67.59 E-value=67 Score=26.27 Aligned_cols=12 Identities=17% Similarity=0.169 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHh
Q psy2889 133 NLAIKSAEKILN 144 (163)
Q Consensus 133 ~la~~~a~kll~ 144 (163)
.+.++..++++.
T Consensus 287 ~~~le~~~~~~~ 298 (317)
T TIGR01932 287 WRSLEAYEKSFK 298 (317)
T ss_pred HHHHHHHHHHhC
Confidence 456667777775
No 162
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=67.43 E-value=3.5 Score=30.35 Aligned_cols=28 Identities=14% Similarity=0.335 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 56 SEKEKVSYDRKRIQKELIATHEENKNRI 83 (163)
Q Consensus 56 ~~~~ea~~~~~e~e~~L~~a~~ea~~ii 83 (163)
..+...+..+.+.+++|.+++.-.+.|+
T Consensus 124 ~~~~~~~~eL~qLq~rL~qTE~~m~kil 151 (152)
T PF15361_consen 124 TKRKITDYELAQLQERLAQTERAMEKIL 151 (152)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444567777788888887777666664
No 163
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=66.68 E-value=55 Score=24.96 Aligned_cols=82 Identities=17% Similarity=0.180 Sum_probs=41.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 31 FIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILY 110 (163)
Q Consensus 31 ~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~ 110 (163)
+.+||++. +.|++.+...-..+++.+-.....+.+....+....... .|-++....++...+.+..++-.+++.+.+
T Consensus 102 v~~P~lTe--ErRkelvK~~k~~~EeakvaiRniRrda~d~iKK~~K~~-~isEDe~k~~e~~iQKlTd~yi~~iD~~~~ 178 (187)
T COG0233 102 VPLPPLTE--ERRKELVKVAKKYAEEAKVAVRNIRRDANDKIKKLEKDK-EISEDEVKKAEEEIQKLTDEYIKKIDELLK 178 (187)
T ss_pred ecCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455542 556666655555566655555555555555554443221 133444445555555555555555555555
Q ss_pred HHHHH
Q psy2889 111 NARVE 115 (163)
Q Consensus 111 ~a~~~ 115 (163)
..+.+
T Consensus 179 ~KEkE 183 (187)
T COG0233 179 DKEKE 183 (187)
T ss_pred HHHHH
Confidence 44443
No 164
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=66.38 E-value=10 Score=22.22 Aligned_cols=29 Identities=7% Similarity=-0.082 Sum_probs=21.7
Q ss_pred CccccccccCc-------hHHHHHHHHHHHHHHHHH
Q psy2889 1 MGLIYAIQSAD-------TGAHSHGIRRTIKCCFTK 29 (163)
Q Consensus 1 ~~~~~~~l~~~-------~~~~~~~i~Flil~~~l~ 29 (163)
++|..|-++|. ..++..+-||+|.+.+|.
T Consensus 4 ~egl~pk~DPeE~k~kmR~dvissvrnFliyVALlR 39 (51)
T PF15178_consen 4 IEGLGPKMDPEEMKRKMREDVISSVRNFLIYVALLR 39 (51)
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777774 245889999999998886
No 165
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=66.35 E-value=1.1e+02 Score=28.21 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 105 ANIILYNARVEIIKQINIARENLHN 129 (163)
Q Consensus 105 ~~~~~~~a~~~i~~e~~~a~~~l~~ 129 (163)
.......-+.+++.|..+.+.+|+.
T Consensus 539 ~~e~~r~r~~~lE~E~~~lr~elk~ 563 (697)
T PF09726_consen 539 CAESCRQRRRQLESELKKLRRELKQ 563 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555555555555543
No 166
>COG4023 SBH1 Preprotein translocase subunit Sec61beta [Intracellular trafficking and secretion]
Probab=65.96 E-value=5.7 Score=24.21 Aligned_cols=28 Identities=11% Similarity=-0.012 Sum_probs=19.5
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHhHHH
Q psy2889 8 QSADTGAHSHGIRRTIKCCFTKKFIWPP 35 (163)
Q Consensus 8 l~~~~~~~~~~i~Flil~~~l~~~l~~p 35 (163)
+.+|+..+.-+..|+.+++++.++++||
T Consensus 30 ikidP~~vV~~~~av~~lvi~A~~f~p~ 57 (57)
T COG4023 30 IKIDPRLVVYAGIAVAILVIAAHIFAPP 57 (57)
T ss_pred cccCchhhHHHHHHHHHHHHHHHHhcCC
Confidence 4556666666666777777777887776
No 167
>MTH00171 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=65.44 E-value=15 Score=21.67 Aligned_cols=23 Identities=4% Similarity=-0.286 Sum_probs=14.8
Q ss_pred cccccCchHHHHHHHHHHHHHHH
Q psy2889 5 YAIQSADTGAHSHGIRRTIKCCF 27 (163)
Q Consensus 5 ~~~l~~~~~~~~~~i~Flil~~~ 27 (163)
||+++|..-++..+..-++|+++
T Consensus 1 MPQL~p~pWf~~~~~~W~~l~~~ 23 (54)
T MTH00171 1 MPQLNPIPWFFIFLFSWLIFLTL 23 (54)
T ss_pred CCCCCchHHHHHHHHHHHHHHHH
Confidence 68899988775555554555433
No 168
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=65.40 E-value=65 Score=25.30 Aligned_cols=22 Identities=0% Similarity=-0.080 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy2889 71 ELIATHEENKNRINLTEKQCKL 92 (163)
Q Consensus 71 ~L~~a~~ea~~ii~~A~~~a~~ 92 (163)
...+++.++..++..|+.+|+.
T Consensus 195 ~~~eae~~a~~~~~~A~~ea~~ 216 (266)
T cd03404 195 LINEAEAYANEVVPKARGEAAR 216 (266)
T ss_pred HHHHHHHHHHHHHHHhHhHHHH
Confidence 3334444445555554444444
No 169
>PRK14148 heat shock protein GrpE; Provisional
Probab=65.35 E-value=60 Score=24.90 Aligned_cols=9 Identities=11% Similarity=0.246 Sum_probs=3.9
Q ss_pred hhcCHHHHH
Q psy2889 145 NKITIEVNS 153 (163)
Q Consensus 145 ~~i~~~~~~ 153 (163)
...||..|.
T Consensus 147 ~~FDP~~HE 155 (195)
T PRK14148 147 EKFDPNLHE 155 (195)
T ss_pred CCCChhHhh
Confidence 344444443
No 170
>COG5085 Predicted membrane protein [Function unknown]
Probab=65.26 E-value=48 Score=25.80 Aligned_cols=42 Identities=24% Similarity=0.242 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHH
Q psy2889 14 AHSHGIRRTIKCCFTKKFIW---PPLIKALDDRKKKIADILAAAN 55 (163)
Q Consensus 14 ~~~~~i~Flil~~~l~~~l~---~pi~~~l~~R~~~I~~~l~~A~ 55 (163)
+|++.|.-.|++.++.+|++ +-+..-++.|+..++.+..+.+
T Consensus 88 LflNaiv~~iilyf~~kfi~glQnDv~~k~e~rk~e~q~q~a~ck 132 (230)
T COG5085 88 LFLNAIVIGIILYFVVKFIVGLQNDVGYKMESRKAEIQHQIAECK 132 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555554 4566677777777766655554
No 171
>KOG4503|consensus
Probab=65.26 E-value=48 Score=25.80 Aligned_cols=42 Identities=24% Similarity=0.242 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHH
Q psy2889 14 AHSHGIRRTIKCCFTKKFIW---PPLIKALDDRKKKIADILAAAN 55 (163)
Q Consensus 14 ~~~~~i~Flil~~~l~~~l~---~pi~~~l~~R~~~I~~~l~~A~ 55 (163)
+|++.|.-.|++.++.+|++ +-+..-++.|+..++.+..+.+
T Consensus 88 LflNaiv~~iilyf~~kfi~glQnDv~~k~e~rk~e~q~q~a~ck 132 (230)
T KOG4503|consen 88 LFLNAIVIGIILYFVVKFIVGLQNDVGYKMESRKAEIQHQIAECK 132 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555554 4566677777777766655554
No 172
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=65.09 E-value=67 Score=25.35 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy2889 35 PLIKALDDRKKKIADILA 52 (163)
Q Consensus 35 pi~~~l~~R~~~I~~~l~ 52 (163)
.+..++.+| ..|...+.
T Consensus 101 ~l~eil~~R-~~I~~~i~ 117 (262)
T cd03407 101 TLDELFEQK-DEIAKAVE 117 (262)
T ss_pred cHHHHHhhH-HHHHHHHH
Confidence 455566666 44544443
No 173
>COG3462 Predicted membrane protein [Function unknown]
Probab=63.76 E-value=8.3 Score=26.80 Aligned_cols=9 Identities=0% Similarity=0.121 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q psy2889 65 RKRIQKELI 73 (163)
Q Consensus 65 ~~e~e~~L~ 73 (163)
.+||++.+.
T Consensus 105 EEEY~r~~~ 113 (117)
T COG3462 105 EEEYRRIIR 113 (117)
T ss_pred HHHHHHHHH
Confidence 344444443
No 174
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=63.10 E-value=70 Score=27.70 Aligned_cols=59 Identities=12% Similarity=0.153 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 32 IWPPLIKALDDRKKKIA---DILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQC 90 (163)
Q Consensus 32 l~~pi~~~l~~R~~~I~---~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a 90 (163)
..|-++.+|++|.+.-+ +.|+.+++.+++|-++..+.+++|.++..-++.-+...=.+.
T Consensus 24 GvKqMK~~Mek~eeeh~~Lm~tL~k~kk~KeeAl~l~~e~e~kLee~e~~Cn~sm~~lWeEC 85 (436)
T PF01093_consen 24 GVKQMKTMMEKTEEEHKELMKTLEKSKKEKEEALKLANEVEEKLEEEEEVCNESMMALWEEC 85 (436)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778889988877655 678888889999999999999999999988887666543333
No 175
>PF06129 Chordopox_G3: Chordopoxvirus G3 protein; InterPro: IPR010367 This family consists of several poxvirus specific G3 proteins. The function of this family is unknown.
Probab=62.68 E-value=7.9 Score=26.91 Aligned_cols=25 Identities=16% Similarity=-0.108 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Q psy2889 15 HSHGIRRTIKCCFTKKFIWPPLIKA 39 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~~pi~~~ 39 (163)
+..++.|++++.++++|-|.|..++
T Consensus 3 ll~l~ffi~Fl~~~Y~~~y~PTNK~ 27 (109)
T PF06129_consen 3 LLYLIFFILFLVLCYFFNYYPTNKM 27 (109)
T ss_pred HHHHHHHHHHHHHHHHHhhccchHH
Confidence 3456667777777788889998765
No 176
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=62.40 E-value=64 Score=24.19 Aligned_cols=23 Identities=0% Similarity=-0.120 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Q psy2889 18 GIRRTIKCCFTKKFIWPPLIKAL 40 (163)
Q Consensus 18 ~i~Flil~~~l~~~l~~pi~~~l 40 (163)
+..|.++++++.+-++.-+.+..
T Consensus 106 IsGf~LfL~l~I~r~~~li~~l~ 128 (192)
T PF05529_consen 106 ISGFALFLSLVIRRVHSLIKELI 128 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666655554554444433
No 177
>MTH00102 ATP8 ATP synthase F0 subunit 8; Validated
Probab=62.38 E-value=19 Score=22.66 Aligned_cols=22 Identities=5% Similarity=-0.367 Sum_probs=14.6
Q ss_pred cccccCchHHHHHHHHHHHHHH
Q psy2889 5 YAIQSADTGAHSHGIRRTIKCC 26 (163)
Q Consensus 5 ~~~l~~~~~~~~~~i~Flil~~ 26 (163)
||+++|++.|...+...++|+.
T Consensus 1 MPQLnP~PWf~il~~tWl~ll~ 22 (67)
T MTH00102 1 MPQLDTSTWFITILSMLLTLFI 22 (67)
T ss_pred CCCCCCcHHHHHHHHHHHHHHH
Confidence 6899999887555555444433
No 178
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=61.80 E-value=76 Score=24.86 Aligned_cols=20 Identities=0% Similarity=0.013 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy2889 72 LIATHEENKNRINLTEKQCK 91 (163)
Q Consensus 72 L~~a~~ea~~ii~~A~~~a~ 91 (163)
..+++.++..++..|+.+++
T Consensus 169 ~~~ae~~~~~~~~~a~~~a~ 188 (261)
T TIGR01933 169 INEAEAYANEVVPKARGDAQ 188 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444
No 179
>COG3224 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.78 E-value=18 Score=27.55 Aligned_cols=36 Identities=8% Similarity=-0.054 Sum_probs=26.6
Q ss_pred ccccCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy2889 6 AIQSADTGAHSHGIRRTIKCCFTKKFIWPPLIKALD 41 (163)
Q Consensus 6 ~~l~~~~~~~~~~i~Flil~~~l~~~l~~pi~~~l~ 41 (163)
|.++.-+-..+.+|+-++.+.++.+|+.|-+.+++.
T Consensus 143 p~l~~~~l~~~~Li~t~~~v~LltYf~iP~vs~l~~ 178 (195)
T COG3224 143 PKLGFLPLPTRVLIGTLCSVSLLTYFVIPLVSRLYA 178 (195)
T ss_pred cccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333789999999999999999888877764
No 180
>PRK05687 fliH flagellar assembly protein H; Validated
Probab=61.03 E-value=78 Score=24.74 Aligned_cols=51 Identities=10% Similarity=0.227 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CHHHHHHHHHHHHhh
Q psy2889 112 ARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKI--TIEVNSSLLNQLKIE 162 (163)
Q Consensus 112 a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i--~~~~~~~li~~~i~~ 162 (163)
.-..+.........++..++.++++.+|+++++..+ +++.-..+|...+..
T Consensus 118 l~~~l~~~l~~l~~~ie~~Lv~Lal~ia~~vi~~el~~~~~~il~~v~~al~~ 170 (246)
T PRK05687 118 LAAQFQEPLALLDSVIESRLVQLALELARQVIGQELKTDPSAILAAIRELLQA 170 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHh
Confidence 344556666667778889999999999999999987 466666777777654
No 181
>PF14899 DUF4492: Domain of unknown function (DUF4492)
Probab=60.28 E-value=20 Score=22.44 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Q psy2889 16 SHGIRRTIKCCFTKKFIWPPLIKAL 40 (163)
Q Consensus 16 ~~~i~Flil~~~l~~~l~~pi~~~l 40 (163)
.-+|=.+|++++|+-|++|+..+..
T Consensus 24 IIliKLfImF~vLK~FfFp~~l~~~ 48 (64)
T PF14899_consen 24 IILIKLFIMFAVLKLFFFPNFLNTK 48 (64)
T ss_pred HHHHHHHHHHHHHHHHHCcchhccC
Confidence 3345567778899999999987765
No 182
>PRK06328 type III secretion system protein; Validated
Probab=59.95 E-value=81 Score=24.55 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 61 VSYDRKRIQKELIATHEENKNRINLTEKQC 90 (163)
Q Consensus 61 a~~~~~e~e~~L~~a~~ea~~ii~~A~~~a 90 (163)
.+....+.+..+.+++.+++.+.++|+.++
T Consensus 35 l~~a~~~ae~i~~ea~~e~E~i~eeA~~eG 64 (223)
T PRK06328 35 LEKTKEDSEAYTQETHEECEKLREEAKNQG 64 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666666665544
No 183
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=59.92 E-value=11 Score=26.76 Aligned_cols=13 Identities=8% Similarity=-0.194 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q psy2889 14 AHSHGIRRTIKCC 26 (163)
Q Consensus 14 ~~~~~i~Flil~~ 26 (163)
+|+.+|.+++|++
T Consensus 4 l~~iii~~i~l~~ 16 (130)
T PF12273_consen 4 LFAIIIVAILLFL 16 (130)
T ss_pred eHHHHHHHHHHHH
Confidence 3333333333333
No 184
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.88 E-value=62 Score=23.25 Aligned_cols=80 Identities=6% Similarity=-0.010 Sum_probs=45.6
Q ss_pred chHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 11 DTGA-HSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQ 89 (163)
Q Consensus 11 ~~~~-~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~ 89 (163)
||++ .|......++++++.=|+.-.+.+-=-.-+.+.+.+++.+ ...+.+|+++|..==.+..++++..-.+
T Consensus 2 nwt~~~W~~a~igLvvGi~IG~li~Rlt~~~~k~q~~~q~ELe~~-------K~~ld~~rqel~~HFa~sAeLlktl~~d 74 (138)
T COG3105 2 NWTFMTWEYALIGLVVGIIIGALIARLTNRKLKQQQKLQYELEKV-------KAQLDEYRQELVKHFARSAELLKTLAQD 74 (138)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666 7887777777776665555555444444445555555433 3445556666655555555555555555
Q ss_pred HHHHHHHH
Q psy2889 90 CKLIIEKS 97 (163)
Q Consensus 90 a~~~~~~~ 97 (163)
-.+.++.+
T Consensus 75 YqklyqHm 82 (138)
T COG3105 75 YQKLYQHM 82 (138)
T ss_pred HHHHHHHH
Confidence 55555444
No 185
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=59.72 E-value=1.2e+02 Score=26.27 Aligned_cols=57 Identities=18% Similarity=0.109 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 35 PLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCK 91 (163)
Q Consensus 35 pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~ 91 (163)
|-....++|.+.++.++..-+....+........+..|.+.+.+...+..+-...+.
T Consensus 31 ~s~~a~~~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~ 87 (420)
T COG4942 31 FSAAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETAD 87 (420)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 336666788999999999999999999999999999999999888877665544443
No 186
>MTH00072 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=59.72 E-value=20 Score=21.11 Aligned_cols=19 Identities=5% Similarity=-0.207 Sum_probs=11.3
Q ss_pred cccccCchHHHHHHHHHHH
Q psy2889 5 YAIQSADTGAHSHGIRRTI 23 (163)
Q Consensus 5 ~~~l~~~~~~~~~~i~Fli 23 (163)
||+++|.+-+...+...++
T Consensus 1 MPQL~P~pW~~~~~~~W~~ 19 (54)
T MTH00072 1 MPQLNPGPWFAIFLMSWLI 19 (54)
T ss_pred CCCCCchHHHHHHHHHHHH
Confidence 6888888776333333333
No 187
>PRK14158 heat shock protein GrpE; Provisional
Probab=58.25 E-value=83 Score=24.13 Aligned_cols=13 Identities=0% Similarity=0.023 Sum_probs=7.9
Q ss_pred HhhhcCHHHHHHH
Q psy2889 143 LNNKITIEVNSSL 155 (163)
Q Consensus 143 l~~~i~~~~~~~l 155 (163)
+|...||..|..+
T Consensus 145 ~G~~FDP~~HEAv 157 (194)
T PRK14158 145 KGTPFDPAYHQAM 157 (194)
T ss_pred CCCCCChHHhhhh
Confidence 3566677766544
No 188
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=58.19 E-value=84 Score=24.18 Aligned_cols=19 Identities=11% Similarity=0.307 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy2889 35 PLIKALDDRKKKIADILAA 53 (163)
Q Consensus 35 pi~~~l~~R~~~I~~~l~~ 53 (163)
++..++...+..|...+.+
T Consensus 109 ~~~el~~~~R~~i~~~i~~ 127 (242)
T cd03405 109 TLIELVSGERGELMEEIRR 127 (242)
T ss_pred CHHHHHHhHHHHHHHHHHH
Confidence 4556666634555554443
No 189
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=57.60 E-value=54 Score=22.68 Aligned_cols=17 Identities=6% Similarity=0.028 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy2889 64 DRKRIQKELIATHEENK 80 (163)
Q Consensus 64 ~~~e~e~~L~~a~~ea~ 80 (163)
...=|+.+|.+.+.+.+
T Consensus 37 n~~iyr~qL~ELe~d~~ 53 (117)
T TIGR03142 37 NLAVYRDRLAELERDLA 53 (117)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556666666655544
No 190
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=57.40 E-value=11 Score=24.94 Aligned_cols=22 Identities=9% Similarity=-0.073 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q psy2889 15 HSHGIRRTIKCCFTKKFIWPPL 36 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~~pi 36 (163)
++.++.|++|++++.|++|+.|
T Consensus 71 ~li~~~~~~f~~~v~yI~~rRl 92 (92)
T PF03908_consen 71 ILIFFAFLFFLLVVLYILWRRL 92 (92)
T ss_pred HHHHHHHHHHHHHHHHHhhhcC
Confidence 4555778888888888888753
No 191
>PHA01815 hypothetical protein
Probab=57.00 E-value=8.4 Score=22.47 Aligned_cols=22 Identities=14% Similarity=-0.063 Sum_probs=9.8
Q ss_pred chHH-HHHHHHHHHHHHHHHHHh
Q psy2889 11 DTGA-HSHGIRRTIKCCFTKKFI 32 (163)
Q Consensus 11 ~~~~-~~~~i~Flil~~~l~~~l 32 (163)
++++ |.+++.|-|.+.++.+-+
T Consensus 30 sfgvlftt~iifyiifl~viyal 52 (55)
T PHA01815 30 SFGVLFTTLIIFYIIFLMVIYAL 52 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443 444555554444443333
No 192
>PF10961 DUF2763: Protein of unknown function (DUF2763); InterPro: IPR024491 This entry represents an eukaryotic family of selenoproteins. It includes SelK, which seems to play an important role in protecting cells from endoplasmic reticulum stress-induced apoptosis [] and SelG, which may be involved in regulating the redox state of the cell [].
Probab=56.81 E-value=11 Score=25.26 Aligned_cols=15 Identities=13% Similarity=-0.199 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHH
Q psy2889 12 TGAHSHGIRRTIKCC 26 (163)
Q Consensus 12 ~~~~~~~i~Flil~~ 26 (163)
+.+||-+++|+.+||
T Consensus 22 ~d~Fwgi~~fI~lFF 36 (91)
T PF10961_consen 22 TDFFWGIINFIVLFF 36 (91)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345899999988875
No 193
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=56.15 E-value=52 Score=24.38 Aligned_cols=8 Identities=13% Similarity=0.190 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q psy2889 36 LIKALDDR 43 (163)
Q Consensus 36 i~~~l~~R 43 (163)
+..++.+|
T Consensus 111 ~~ei~~~R 118 (196)
T cd03401 111 AEELITQR 118 (196)
T ss_pred HHHHHhhH
Confidence 34445443
No 194
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=55.97 E-value=1.1e+02 Score=24.97 Aligned_cols=24 Identities=33% Similarity=0.142 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 89 QCKLIIEKSKKKATEEANIILYNA 112 (163)
Q Consensus 89 ~a~~~~~~~~~~A~~e~~~~~~~a 112 (163)
+++...+.+..+|+.++.+++.+|
T Consensus 231 ege~~a~~i~a~A~~e~~~~~aeA 254 (317)
T TIGR01932 231 QGEEKAEEILGKAEYEVRKILSEA 254 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455555555555544
No 195
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=54.94 E-value=16 Score=22.59 Aligned_cols=28 Identities=21% Similarity=-0.012 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy2889 15 HSHGIRRTIKCCFTKKFIWPPLIKALDD 42 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~~pi~~~l~~ 42 (163)
.|-++-|+++++.+.+++|.|=.+---+
T Consensus 12 a~~t~~~~l~fiavi~~ayr~~~K~~~d 39 (60)
T COG4736 12 AWGTIAFTLFFIAVIYFAYRPGKKGEFD 39 (60)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchhhHH
Confidence 5666777777777777888886554433
No 196
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=54.81 E-value=48 Score=20.40 Aligned_cols=24 Identities=8% Similarity=-0.388 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Q psy2889 13 GAHSHGIRRTIKCCFTKKFIWPPL 36 (163)
Q Consensus 13 ~~~~~~i~Flil~~~l~~~l~~pi 36 (163)
+-++.+|+|+||+.-|-+.....+
T Consensus 10 triVLLISfiIlfgRl~Y~~I~a~ 33 (59)
T PF11119_consen 10 TRIVLLISFIILFGRLIYSAIGAW 33 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Confidence 337888999998884444444333
No 197
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=54.28 E-value=19 Score=24.32 Aligned_cols=25 Identities=12% Similarity=-0.146 Sum_probs=19.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHHH
Q psy2889 11 DTGAHSHGIRRTIKCCFTKKFIWPP 35 (163)
Q Consensus 11 ~~~~~~~~i~Flil~~~l~~~l~~p 35 (163)
.|.+++-+.+|++-++|-+++...|
T Consensus 3 kw~l~Lc~~SF~~G~lft~R~W~~p 27 (95)
T PF13334_consen 3 KWVLLLCIASFCAGMLFTNRMWTVP 27 (95)
T ss_pred hHHHHHHHHHHHHHHHHhcccccCC
Confidence 3566888888998888888876444
No 198
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=54.05 E-value=1.3e+02 Score=25.11 Aligned_cols=13 Identities=23% Similarity=-0.059 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHH
Q psy2889 14 AHSHGIRRTIKCC 26 (163)
Q Consensus 14 ~~~~~i~Flil~~ 26 (163)
++.++|.|.+|+|
T Consensus 19 ~vLH~iLfalLIw 31 (387)
T COG3064 19 AVLHIILFALLIW 31 (387)
T ss_pred HHHHHHHHHHHHH
Confidence 3566666666666
No 199
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=53.97 E-value=42 Score=19.66 Aligned_cols=21 Identities=10% Similarity=0.037 Sum_probs=9.8
Q ss_pred HHHHHHHH-HHHHHHHhHHHHH
Q psy2889 17 HGIRRTIK-CCFTKKFIWPPLI 37 (163)
Q Consensus 17 ~~i~Flil-~~~l~~~l~~pi~ 37 (163)
.+|.|+++ ..+..+|+||.|.
T Consensus 15 ~lIC~Fl~~~~~F~~F~~Kqil 36 (54)
T PF06716_consen 15 FLICLFLFCLVVFIWFVYKQIL 36 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 33444333 3344556666553
No 200
>PRK06771 hypothetical protein; Provisional
Probab=53.16 E-value=68 Score=21.64 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 34 PPLIKALDDRKKKIADILAAANS 56 (163)
Q Consensus 34 ~pi~~~l~~R~~~I~~~l~~A~~ 56 (163)
..+.+.++.|.+.++..++..-+
T Consensus 22 ~~~~~~~~~~~k~ie~~L~~I~~ 44 (93)
T PRK06771 22 TKIEKKTDARLKRMEDRLQLITK 44 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666777788888777776543
No 201
>PRK14161 heat shock protein GrpE; Provisional
Probab=52.90 E-value=98 Score=23.35 Aligned_cols=54 Identities=20% Similarity=0.179 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 51 LAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEE 104 (163)
Q Consensus 51 l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e 104 (163)
+..+.....+.+....++..++..+..+.+..+..+.++.+..........-.+
T Consensus 21 ~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~~~ 74 (178)
T PRK14161 21 VETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAIATFAKE 74 (178)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333343344444444555555555555555555555555544444444433333
No 202
>PRK11677 hypothetical protein; Provisional
Probab=52.56 E-value=85 Score=22.59 Aligned_cols=41 Identities=15% Similarity=0.258 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 59 EKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKK 99 (163)
Q Consensus 59 ~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~ 99 (163)
++++..+.+|++.+.+==.+..++++.....-..+++.+-.
T Consensus 39 e~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~Ly~HlA~ 79 (134)
T PRK11677 39 EKNKAELEEYRQELVSHFARSAELLDTMAKDYRQLYQHMAK 79 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566676666665556666666666666666655533
No 203
>PRK14162 heat shock protein GrpE; Provisional
Probab=52.08 E-value=1.1e+02 Score=23.53 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 62 SYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKK 99 (163)
Q Consensus 62 ~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~ 99 (163)
+....++..++..+..+.+..+....++.+..+.....
T Consensus 52 ~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~ 89 (194)
T PRK14162 52 KAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYESQ 89 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444445444444444444444444333
No 204
>PRK10780 periplasmic chaperone; Provisional
Probab=51.97 E-value=92 Score=22.80 Aligned_cols=94 Identities=10% Similarity=0.074 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q psy2889 47 IADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKAT-------EEANIILYNARVEIIKQ 119 (163)
Q Consensus 47 I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~-------~e~~~~~~~a~~~i~~e 119 (163)
|-.............+.....++..|..-..+.+...+.-..++...-+.....-+ .+..+.....+.++...
T Consensus 34 il~~~p~~k~~~~~le~~~~~~q~el~~~~~elq~~~~~~q~~~~~ms~~~~~~~~~el~~~~~~~q~~~~~~qq~~~~~ 113 (165)
T PRK10780 34 IFQQVPQRTGVSKQLENEFKGRASELQRMETDLQAKMQKLQRDGSTMKGSDRTKLEKDVMAQRQTFSQKAQAFEQDRRRR 113 (165)
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555444444443333222222222222 22333333333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy2889 120 INIARENLHNEIVNLAIKSAE 140 (163)
Q Consensus 120 ~~~a~~~l~~~i~~la~~~a~ 140 (163)
..+....+...+.+..-.++.
T Consensus 114 ~~e~~~~i~~ki~~ai~~vak 134 (165)
T PRK10780 114 SNEERNKILTRIQTAVKSVAN 134 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555544444443
No 205
>PF10107 Endonuc_Holl: Endonuclease related to archaeal Holliday junction resolvase; InterPro: IPR019287 This domain is found in various predicted bacterial endonucleases which are distantly related to archaeal Holliday junction resolvases.
Probab=51.86 E-value=96 Score=22.96 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=27.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 28 TKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATH 76 (163)
Q Consensus 28 l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~ 76 (163)
...+-+--+..-++.|...+-.++...+.... ......+|+..+....
T Consensus 8 ~l~~~~~~l~~~~~~~a~~~fe~wr~~~~~~~-e~~~~~~~~~~~~~w~ 55 (156)
T PF10107_consen 8 ILFLKYSELQGKIERRARELFEQWRQRESETL-EAQIEEEYEAELEEWK 55 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHH
Confidence 33344566788888888888777765544333 3334444555554443
No 206
>PF00672 HAMP: HAMP domain; InterPro: IPR003660 The HAMP linker domain (present in Histidine kinases, Adenyl cyclases, Methyl-accepting proteins and Phosphatases) is an approximately 50-amino acid alpha-helical region. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. One or several copies of the HAMP domain can be found in association with other domains, such as the histidine kinase domain, the bacterial chemotaxis sensory transducer domain, the PAS repeat, the EAL domain, the GGDEF domain, the protein phosphatase 2C-like domain, the guanylate cyclase domain, or the response regulatory domain. It has been suggested that the HAMP domain possesses a role of regulating the phosphorylation or methylation of homodimeric receptors by transmitting the conformational changes in periplasmic ligand-binding domains to cytoplasmic signalling kinase and methyl-acceptor domains.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016021 integral to membrane; PDB: 3PJX_A 3PJW_A 3ZX6_B 2Y20_B 2Y0Q_D 2Y21_H 3ZRW_C 2L7H_B 2LFS_B 2L7I_B ....
Probab=51.71 E-value=13 Score=22.47 Aligned_cols=27 Identities=15% Similarity=0.023 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy2889 15 HSHGIRRTIKCCFTKKFIWPPLIKALD 41 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~~pi~~~l~ 41 (163)
+..++..+++.|++.+.+.+|+.++-+
T Consensus 6 ~~~~~~~~~~~~~~~~~i~~pl~~l~~ 32 (70)
T PF00672_consen 6 LIILLLSLLLAWLLARRITRPLRRLSD 32 (70)
T ss_dssp HHHHHHHHHHHHH--HTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555666777777788877653
No 207
>TIGR02832 spo_yunB sporulation protein YunB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. Mutation of this sigma E-regulated gene, designated yunB, has been shown to cause a sporulation defect.
Probab=51.59 E-value=42 Score=25.93 Aligned_cols=35 Identities=14% Similarity=0.062 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy2889 15 HSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIAD 49 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~ 49 (163)
++.++.++.++|++.+.+.|++..+-+.+-+.+..
T Consensus 12 i~~~~~~~~~~~~~~~~i~P~l~~iAe~~a~~~at 46 (204)
T TIGR02832 12 ILFILLLLQFLWIVDSLIKPTLLAVAEVEMNRIAT 46 (204)
T ss_pred HHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHH
Confidence 45555556667777788888898888777766643
No 208
>KOG2412|consensus
Probab=51.42 E-value=1.8e+02 Score=26.02 Aligned_cols=48 Identities=19% Similarity=0.278 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 42 DRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQ 89 (163)
Q Consensus 42 ~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~ 89 (163)
+|...|+......++.+.+++....+.++.+.+-+.+-.+...+++.+
T Consensus 207 q~~eqi~~~~~~~e~kr~Eaerk~~~~qEe~Rqk~d~~~~~~eqekiR 254 (591)
T KOG2412|consen 207 QRKEQIRERKERSEEKREEAERKRRAHQEELRQKEDEEAELQEQEKIR 254 (591)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 455555555555555555555555555554444444443333333333
No 209
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=49.77 E-value=81 Score=21.51 Aligned_cols=14 Identities=7% Similarity=-0.147 Sum_probs=7.9
Q ss_pred cccCchHHHHHHHH
Q psy2889 7 IQSADTGAHSHGIR 20 (163)
Q Consensus 7 ~l~~~~~~~~~~i~ 20 (163)
.+.-+|+++|.++.
T Consensus 4 ~~~~~w~ii~a~~~ 17 (106)
T PF10805_consen 4 FIKKNWGIIWAVFG 17 (106)
T ss_pred HHHhCcHHHHHHHH
Confidence 34456777665553
No 210
>PRK15322 invasion protein OrgB; Provisional
Probab=48.60 E-value=1.3e+02 Score=23.41 Aligned_cols=65 Identities=17% Similarity=0.109 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 51 LAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIK 118 (163)
Q Consensus 51 l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~ 118 (163)
+....-...-.++..++....+..|+.+++.|...|..++ ++.-+.+|..+++.-+.+.+.....
T Consensus 8 l~~~~~a~~l~~qA~~kA~~ii~qA~~eaE~ir~~A~~~G---Yq~Gl~qa~~~la~~~a~~~~l~~~ 72 (210)
T PRK15322 8 LERYFSAERLEQQARRRAKRILRQAEEEAETLRMYAYQEG---YEQGMIDALQQVAAYLTDNQTMAWK 72 (210)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444556667777888899999999999998755 5556777777777777666555443
No 211
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=48.55 E-value=1.1e+02 Score=22.54 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 42 DRKKKIADILAAANSEKEKVSYDRKRIQKEL 72 (163)
Q Consensus 42 ~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L 72 (163)
-|++.+...-..+++.+......+.++...+
T Consensus 91 ~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~l 121 (165)
T PF01765_consen 91 RRKELVKQAKKIAEEAKVSIRNIRRDAMKKL 121 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444333334444444444444433333
No 212
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=48.08 E-value=96 Score=21.89 Aligned_cols=43 Identities=7% Similarity=0.127 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 60 KVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKAT 102 (163)
Q Consensus 60 ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~ 102 (163)
+++..+.+|+..+.+==....+++.+....-..+.+.+-..|.
T Consensus 36 ~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~~Hla~~a~ 78 (128)
T PF06295_consen 36 QAKQELEQYKQEVNDHFAQTAELLDNLTQDYQKLYQHLAKGAE 78 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666654455555555555555555555544333
No 213
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=47.86 E-value=1.3e+02 Score=23.16 Aligned_cols=6 Identities=17% Similarity=0.196 Sum_probs=2.3
Q ss_pred HHHHHH
Q psy2889 35 PLIKAL 40 (163)
Q Consensus 35 pi~~~l 40 (163)
.+..++
T Consensus 100 ~lr~vi 105 (242)
T cd03405 100 ALRAEF 105 (242)
T ss_pred HHHHHH
Confidence 333333
No 214
>COG1983 PspC Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]
Probab=47.78 E-value=17 Score=23.20 Aligned_cols=13 Identities=15% Similarity=0.043 Sum_probs=9.5
Q ss_pred ccccccccCchHH
Q psy2889 2 GLIYAIQSADTGA 14 (163)
Q Consensus 2 ~~~~~~l~~~~~~ 14 (163)
||+....++|+++
T Consensus 19 gGla~yf~id~tl 31 (70)
T COG1983 19 GGLAEYFGIDPTL 31 (70)
T ss_pred hhHHHHhCCChHH
Confidence 5666777888876
No 215
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=47.59 E-value=1.4e+02 Score=23.67 Aligned_cols=18 Identities=11% Similarity=0.038 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy2889 73 IATHEENKNRINLTEKQC 90 (163)
Q Consensus 73 ~~a~~ea~~ii~~A~~~a 90 (163)
..++.++..++.+|..++
T Consensus 207 a~g~~~a~~i~aea~~~a 224 (291)
T COG0330 207 AEGEAEAAIILAEAEAEA 224 (291)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 455555556666555555
No 216
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=47.45 E-value=52 Score=18.61 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 81 NRINLTEKQCKLIIEKSKKKATEEA 105 (163)
Q Consensus 81 ~ii~~A~~~a~~~~~~~~~~A~~e~ 105 (163)
+|+++.+++..+..+++++....+.
T Consensus 11 EIL~EvrkEl~K~K~EIIeA~~~eL 35 (40)
T PF08776_consen 11 EILEEVRKELQKVKEEIIEAIRQEL 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555444444443
No 217
>COG1422 Predicted membrane protein [Function unknown]
Probab=47.31 E-value=1.3e+02 Score=23.22 Aligned_cols=28 Identities=7% Similarity=-0.003 Sum_probs=12.7
Q ss_pred cccccC---chHHHHHHHHHHHHHHHHHHHh
Q psy2889 5 YAIQSA---DTGAHSHGIRRTIKCCFTKKFI 32 (163)
Q Consensus 5 ~~~l~~---~~~~~~~~i~Flil~~~l~~~l 32 (163)
.|+++| .++++...+...+..-++++++
T Consensus 38 ~P~i~~~~p~lvilV~avi~gl~~~i~~~~l 68 (201)
T COG1422 38 GPLLSPLPPHLVILVAAVITGLYITILQKLL 68 (201)
T ss_pred hhhccccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 355554 3333444444444444555554
No 218
>PF12669 P12: Virus attachment protein p12 family
Probab=47.23 E-value=22 Score=21.74 Aligned_cols=13 Identities=8% Similarity=-0.240 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q psy2889 16 SHGIRRTIKCCFT 28 (163)
Q Consensus 16 ~~~i~Flil~~~l 28 (163)
+.+|.+++++|++
T Consensus 4 I~~Ii~~~~~~v~ 16 (58)
T PF12669_consen 4 IGIIILAAVAYVA 16 (58)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 219
>MTH00147 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=47.03 E-value=30 Score=20.47 Aligned_cols=10 Identities=10% Similarity=-0.303 Sum_probs=5.6
Q ss_pred cccccCchHH
Q psy2889 5 YAIQSADTGA 14 (163)
Q Consensus 5 ~~~l~~~~~~ 14 (163)
+|+++|-..+
T Consensus 1 MPQmsPm~W~ 10 (51)
T MTH00147 1 MPQLSPLNWI 10 (51)
T ss_pred CCCCcchHHH
Confidence 4666664443
No 220
>KOG4759|consensus
Probab=46.90 E-value=1.5e+02 Score=23.84 Aligned_cols=66 Identities=14% Similarity=0.126 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 59 EKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENL 127 (163)
Q Consensus 59 ~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l 127 (163)
.-+....++|...+...+.++..-+...... ..++-...++++.+.+...+...++...+...++|
T Consensus 195 K~~~~~~ee~K~slr~ir~~~~kk~~k~~~~---~~~D~vkkae~~l~~l~k~~v~~ld~llkskeKel 260 (263)
T KOG4759|consen 195 KVLKRYFEEYKQSLRKIRTKSIKKSKKNKKS---LSEDEVKKAEAELQKLAKDAVNKLDDLLKSKEKEL 260 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677788888888877776555544443 44555566666677777777666666666665554
No 221
>MTH00186 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=46.32 E-value=47 Score=19.48 Aligned_cols=10 Identities=20% Similarity=-0.287 Sum_probs=6.2
Q ss_pred cccccCchHH
Q psy2889 5 YAIQSADTGA 14 (163)
Q Consensus 5 ~~~l~~~~~~ 14 (163)
+|++.|-.-+
T Consensus 1 MPQm~P~~W~ 10 (52)
T MTH00186 1 MPQLSPLFWA 10 (52)
T ss_pred CCCCCchHHH
Confidence 4777775544
No 222
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=46.07 E-value=1.3e+02 Score=22.69 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy2889 46 KIADILAAANSEKEKV 61 (163)
Q Consensus 46 ~I~~~l~~A~~~~~ea 61 (163)
.++..+++|+..-...
T Consensus 72 ~~~~~l~ea~~~i~~i 87 (199)
T PF10112_consen 72 YIREILEEAKEKIRRI 87 (199)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444433333
No 223
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=45.92 E-value=37 Score=19.62 Aligned_cols=19 Identities=0% Similarity=-0.410 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q psy2889 15 HSHGIRRTIKCCFTKKFIW 33 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~ 33 (163)
++.++.|+++++++.+..+
T Consensus 13 ~~~v~~~~~F~gi~~w~~~ 31 (49)
T PF05545_consen 13 IGTVLFFVFFIGIVIWAYR 31 (49)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 5555555555555554433
No 224
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=45.82 E-value=1.8e+02 Score=24.24 Aligned_cols=11 Identities=9% Similarity=0.268 Sum_probs=6.6
Q ss_pred HHHHHHHHHHh
Q psy2889 134 LAIKSAEKILN 144 (163)
Q Consensus 134 la~~~a~kll~ 144 (163)
..++..+++++
T Consensus 298 ~~lea~~~~~~ 308 (334)
T PRK11029 298 RSLRAYENSFS 308 (334)
T ss_pred HHHHHHHHHhc
Confidence 44566666664
No 225
>PRK14144 heat shock protein GrpE; Provisional
Probab=45.74 E-value=1.4e+02 Score=23.03 Aligned_cols=10 Identities=0% Similarity=0.043 Sum_probs=4.6
Q ss_pred hhhcCHHHHH
Q psy2889 144 NNKITIEVNS 153 (163)
Q Consensus 144 ~~~i~~~~~~ 153 (163)
|...||..|.
T Consensus 150 G~~FDP~~HE 159 (199)
T PRK14144 150 GQTFDPQQHE 159 (199)
T ss_pred CCCCChhHhc
Confidence 3444554443
No 226
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=45.57 E-value=1.4e+02 Score=23.10 Aligned_cols=14 Identities=14% Similarity=0.097 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhh
Q psy2889 149 IEVNSSLLNQLKIE 162 (163)
Q Consensus 149 ~~~~~~li~~~i~~ 162 (163)
.+.-.++.|++|.+
T Consensus 191 n~ELtkICDeLI~k 204 (207)
T PF05010_consen 191 NEELTKICDELISK 204 (207)
T ss_pred HHHHHHHHHHHHHH
Confidence 44566777877765
No 227
>COG4046 Uncharacterized protein conserved in archaea [Function unknown]
Probab=45.45 E-value=75 Score=26.43 Aligned_cols=26 Identities=12% Similarity=0.031 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 46 KIADILAAANSEKEKVSYDRKRIQKE 71 (163)
Q Consensus 46 ~I~~~l~~A~~~~~ea~~~~~e~e~~ 71 (163)
.|.+.+...++...++.+...++...
T Consensus 44 ~Ieg~l~~le~~~~~a~~~~~~~~~~ 69 (368)
T COG4046 44 YIEGALAELEKMENDAMKKVVELAVP 69 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46666777776666666666655443
No 228
>PF12832 MFS_1_like: MFS_1 like family
Probab=44.68 E-value=34 Score=21.84 Aligned_cols=49 Identities=22% Similarity=0.171 Sum_probs=30.0
Q ss_pred ccccccccCchH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy2889 2 GLIYAIQSADTG---AHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADI 50 (163)
Q Consensus 2 ~~~~~~l~~~~~---~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~ 50 (163)
|..+|.+++... +-...+..+..+.-+..++.+|+-+.+.+|-.+.+.-
T Consensus 17 g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~ 68 (77)
T PF12832_consen 17 GCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVI 68 (77)
T ss_pred HHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHH
Confidence 344555555433 3334455555556667788888888888887666543
No 229
>PHA02691 hypothetical protein; Provisional
Probab=44.32 E-value=25 Score=24.38 Aligned_cols=25 Identities=8% Similarity=-0.174 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Q psy2889 15 HSHGIRRTIKCCFTKKFIWPPLIKA 39 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~~pi~~~ 39 (163)
+..++.|++++.++++|=|.|-.++
T Consensus 4 l~~l~fFi~FL~l~Y~~ny~PTNKl 28 (110)
T PHA02691 4 ALEVALFAAFLAAAYVLTFLPTNKM 28 (110)
T ss_pred HHHHHHHHHHHHHHHHHhhccchhH
Confidence 3455666666777777777776654
No 230
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=43.94 E-value=1.9e+02 Score=24.17 Aligned_cols=10 Identities=20% Similarity=0.135 Sum_probs=5.0
Q ss_pred HHHHHHHHHH
Q psy2889 36 LIKALDDRKK 45 (163)
Q Consensus 36 i~~~l~~R~~ 45 (163)
+.+....|+.
T Consensus 72 ~~~~~~~r~~ 81 (409)
T TIGR00540 72 SRGWFSGRKR 81 (409)
T ss_pred HHHHHHHHHH
Confidence 4455555443
No 231
>KOG1029|consensus
Probab=43.34 E-value=2.9e+02 Score=26.13 Aligned_cols=11 Identities=27% Similarity=0.262 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q psy2889 98 KKKATEEANII 108 (163)
Q Consensus 98 ~~~A~~e~~~~ 108 (163)
++.|++|.+++
T Consensus 398 rEaar~ElEkq 408 (1118)
T KOG1029|consen 398 REAAREELEKQ 408 (1118)
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 232
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=43.28 E-value=1.4e+02 Score=23.24 Aligned_cols=20 Identities=10% Similarity=0.162 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q psy2889 15 HSHGIRRTIKCCFTKKFIWPPL 36 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~~pi 36 (163)
+.+.+|+++|+ +.-|+.-|-
T Consensus 157 ~lmgvNvllFl--~~~~~~EPw 176 (207)
T PF05546_consen 157 GLMGVNVLLFL--VAQLLVEPW 176 (207)
T ss_pred HHHHHHHHHHH--HHHHHhCHH
Confidence 44444544433 333445443
No 233
>PRK14140 heat shock protein GrpE; Provisional
Probab=43.06 E-value=1.5e+02 Score=22.66 Aligned_cols=9 Identities=0% Similarity=0.183 Sum_probs=3.9
Q ss_pred hhcCHHHHH
Q psy2889 145 NKITIEVNS 153 (163)
Q Consensus 145 ~~i~~~~~~ 153 (163)
...||..|.
T Consensus 144 e~FDP~~HE 152 (191)
T PRK14140 144 EQFDPNLHQ 152 (191)
T ss_pred CCCChHHhc
Confidence 344444443
No 234
>PRK14154 heat shock protein GrpE; Provisional
Probab=42.95 E-value=1.6e+02 Score=22.89 Aligned_cols=44 Identities=14% Similarity=0.137 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 61 VSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEE 104 (163)
Q Consensus 61 a~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e 104 (163)
+++...+++.++..+..+.+..+..+.++.+..........-..
T Consensus 64 le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~ 107 (208)
T PRK14154 64 MERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITD 107 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555544444444444444333333
No 235
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=42.83 E-value=1.4e+02 Score=24.74 Aligned_cols=21 Identities=10% Similarity=-0.027 Sum_probs=12.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHH
Q psy2889 25 CCFTKKFIWPPLIKALDDRKK 45 (163)
Q Consensus 25 ~~~l~~~l~~pi~~~l~~R~~ 45 (163)
+|++.+.+.+|+..+-+.-++
T Consensus 183 ~~~~~~~i~~pl~~l~~~~~~ 203 (461)
T PRK09470 183 LLWLAWSLAKPARKLKNAADE 203 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556667888775544333
No 236
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=42.74 E-value=58 Score=18.60 Aligned_cols=7 Identities=29% Similarity=0.031 Sum_probs=4.0
Q ss_pred Ccccccc
Q psy2889 1 MGLIYAI 7 (163)
Q Consensus 1 ~~~~~~~ 7 (163)
||+..+.
T Consensus 1 MGgy~~y 7 (45)
T TIGR03141 1 MGGYAFY 7 (45)
T ss_pred CCCccHH
Confidence 6666544
No 237
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=42.72 E-value=22 Score=23.47 Aligned_cols=21 Identities=14% Similarity=0.061 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHH
Q psy2889 15 HSHGIRRTIKCCFTKKFIWPP 35 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~~p 35 (163)
+..++.|++++.+|..+-.+|
T Consensus 28 ~~~LilfviF~~~L~~yy~kt 48 (83)
T PF05814_consen 28 ITLLILFVIFFCVLQVYYIKT 48 (83)
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 566667777777776653333
No 238
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=42.04 E-value=1.4e+02 Score=22.08 Aligned_cols=29 Identities=10% Similarity=0.204 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 50 ILAAANSEKEKVSYDRKRIQKELIATHEE 78 (163)
Q Consensus 50 ~l~~A~~~~~ea~~~~~e~e~~L~~a~~e 78 (163)
++.+......+......+.+........+
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~ 110 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESE 110 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433333
No 239
>PF01086 Clathrin_lg_ch: Clathrin light chain; InterPro: IPR000996 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents clathrin light chains, which are more divergent in sequence than the heavy chains []. In higher eukaryotes, two genes encode distinct but related light chains, each of which can yield two separate forms via alternative splicing. In yeast there is a single light chain whose sequence is only distantly related to that of higher eukaryotes. Clathrin light chains have a conserved acidic N-terminal domain, a central coiled-coil domain and a conserved C-terminal domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 3LVG_E 3LVH_D.
Probab=41.70 E-value=77 Score=24.71 Aligned_cols=54 Identities=22% Similarity=0.156 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 71 ELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIAR 124 (163)
Q Consensus 71 ~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~ 124 (163)
.+.++|.+....|++--...+..+++++++|++.++....+-...++.-+...+
T Consensus 113 ~ireWre~~~~~i~ekD~~e~~kk~e~~~~A~k~lddfY~~~~~k~e~~k~~nr 166 (225)
T PF01086_consen 113 AIREWREERDKRIEEKDAEEEEKKEEIKEKAKKELDDFYENRNEKKEKNKKQNR 166 (225)
T ss_dssp HHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555566666666666666665555555555544444
No 240
>smart00030 CLb CLUSTERIN Beta chain.
Probab=41.60 E-value=1.6e+02 Score=22.72 Aligned_cols=55 Identities=13% Similarity=0.159 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 32 IWPPLIKALDDRKKK---IADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLT 86 (163)
Q Consensus 32 l~~pi~~~l~~R~~~---I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A 86 (163)
..|-++.+|+.+.+. +-+.|+.+++.+++|-.+..+.+.+|++...-+++-+...
T Consensus 30 GvKqMK~~mer~~eeh~~ll~tLe~~kk~KeeAlk~~~e~e~kL~E~~~vCnetm~al 87 (206)
T smart00030 30 GVKQIKTLIEKTNKERKSLLSTLEEAKKKKEEALKDTRESEEKLKESQGVCNETMMAL 87 (206)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777776654 4467888888899999999999999999988776655443
No 241
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=41.30 E-value=1.1e+02 Score=20.75 Aligned_cols=37 Identities=16% Similarity=0.294 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 34 PPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQK 70 (163)
Q Consensus 34 ~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~ 70 (163)
.-+...+++|.+.+...+..-++.....+....+.+.
T Consensus 66 ~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 66 EEAIQELKEKKETLELRVKTLQRQEERLREQLKELQE 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555544444444444333333333
No 242
>PRK09702 PTS system arbutin-specific transporter subunit IIB; Provisional
Probab=41.18 E-value=44 Score=24.82 Aligned_cols=19 Identities=11% Similarity=0.018 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q psy2889 15 HSHGIRRTIKCCFTKKFIW 33 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~ 33 (163)
++..+.|+++|+++.+|+.
T Consensus 13 i~iGl~~f~iYyfvF~flI 31 (161)
T PRK09702 13 IAIGLCFTLLYFVVFRTLI 31 (161)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 243
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=41.12 E-value=2.7e+02 Score=25.03 Aligned_cols=44 Identities=14% Similarity=0.026 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 74 ATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEII 117 (163)
Q Consensus 74 ~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~ 117 (163)
+++.+++.++..+++..+.....+..+-+.+++..+...+.-++
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~ 552 (595)
T PRK01433 509 EAVIEAEALIFNIERAIAELTTLLSESEISIINSLLDNIKEAVH 552 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555444332111223333444444455444444
No 244
>PRK14163 heat shock protein GrpE; Provisional
Probab=40.39 E-value=1.8e+02 Score=22.73 Aligned_cols=10 Identities=0% Similarity=0.119 Sum_probs=5.2
Q ss_pred hhhcCHHHHH
Q psy2889 144 NNKITIEVNS 153 (163)
Q Consensus 144 ~~~i~~~~~~ 153 (163)
|...||..|.
T Consensus 139 G~~FDP~~HE 148 (214)
T PRK14163 139 GEPFDPTIHE 148 (214)
T ss_pred CCCCChhHhc
Confidence 4555555554
No 245
>PF05405 Mt_ATP-synt_B: Mitochondrial ATP synthase B chain precursor (ATP-synt_B); InterPro: IPR008688 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit B from the F0 complex in F-ATPases found in mitochondria of eukaryotes (metazoa, viridiplantae (plants and green algae), jakobidae and the malawimonadidae). The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2WSS_X 2CLY_D.
Probab=39.63 E-value=1.5e+02 Score=21.56 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=14.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 28 TKKFIWPPLIKALDDRKKKIADILAAANSEKE 59 (163)
Q Consensus 28 l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ 59 (163)
+..++.+.+.++.++-.......++..+....
T Consensus 38 i~~~ld~~~~~i~~~l~~~~~~~~~~~~~~i~ 69 (163)
T PF05405_consen 38 IAEWLDERIQKIEDELNQSRNDHIKALKERIE 69 (163)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555544444444443333
No 246
>PF09424 YqeY: Yqey-like protein; InterPro: IPR019004 Putative protein of unknown function; the authentic protein is detected in highly purified mitochondria in high-throughput studies; YOR215C is not an essential gene. ; PDB: 1NG6_A.
Probab=39.61 E-value=1.4e+02 Score=21.49 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=17.9
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHHHHhhC
Q psy2889 136 IKSAEKILNNKITIEVNSSLLNQLKIEL 163 (163)
Q Consensus 136 ~~~a~kll~~~i~~~~~~~li~~~i~~l 163 (163)
+.+.+..|+..++++.-..+|+..|.++
T Consensus 80 i~iL~~yLP~~lseeEi~~~v~~~i~e~ 107 (143)
T PF09424_consen 80 IEILEEYLPKQLSEEEIEAIVEEAIAEL 107 (143)
T ss_dssp HHHHGGGS-----HHHHHHHHHHHHHHT
T ss_pred HHHHHHhCcCCCCHHHHHHHHHHHHHHh
Confidence 3477888888888888888888888754
No 247
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=39.56 E-value=25 Score=22.06 Aligned_cols=26 Identities=0% Similarity=-0.216 Sum_probs=12.2
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHhH
Q psy2889 8 QSADTGAHSHGIRRTIKCCFTKKFIW 33 (163)
Q Consensus 8 l~~~~~~~~~~i~Flil~~~l~~~l~ 33 (163)
++|..-++..+.++++++++=++.+|
T Consensus 10 lnPGlIVLlvV~g~ll~flvGnyvlY 35 (69)
T PF04689_consen 10 LNPGLIVLLVVAGLLLVFLVGNYVLY 35 (69)
T ss_pred CCCCeEEeehHHHHHHHHHHHHHHHH
Confidence 34444334555555555544444444
No 248
>PHA02650 hypothetical protein; Provisional
Probab=39.37 E-value=22 Score=23.17 Aligned_cols=10 Identities=10% Similarity=0.318 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q psy2889 33 WPPLIKALDD 42 (163)
Q Consensus 33 ~~pi~~~l~~ 42 (163)
.|-+.+.+..
T Consensus 70 LK~~~r~~~~ 79 (81)
T PHA02650 70 FKGYTRNLNG 79 (81)
T ss_pred HHHhccccCC
Confidence 3444444433
No 249
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=39.00 E-value=1e+02 Score=19.62 Aligned_cols=12 Identities=17% Similarity=0.426 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q psy2889 42 DRKKKIADILAA 53 (163)
Q Consensus 42 ~R~~~I~~~l~~ 53 (163)
+|+++...-++.
T Consensus 39 ~RE~kyq~~I~~ 50 (71)
T PF10960_consen 39 EREEKYQEQIEK 50 (71)
T ss_pred HHHHHHHHHHHH
Confidence 555554444443
No 250
>PRK01253 preprotein translocase subunit SecG; Reviewed
Probab=38.85 E-value=21 Score=21.57 Aligned_cols=27 Identities=11% Similarity=0.058 Sum_probs=19.1
Q ss_pred ccccCchHH-HHHHHHHHHHHHHHHHHh
Q psy2889 6 AIQSADTGA-HSHGIRRTIKCCFTKKFI 32 (163)
Q Consensus 6 ~~l~~~~~~-~~~~i~Flil~~~l~~~l 32 (163)
+.+.+++.. +...+.|.+++++|+.++
T Consensus 25 ~~iKi~P~~Vi~~~~~~~~~v~~L~~~~ 52 (54)
T PRK01253 25 EAIKIDPKTVIAIGLALGIFVLVLNALF 52 (54)
T ss_pred CccccCCeeeeeeHHHHHHHHHHHHhhc
Confidence 345556554 777788999999888753
No 251
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=38.54 E-value=1.1e+02 Score=20.00 Aligned_cols=25 Identities=4% Similarity=-0.053 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 72 LIATHEENKNRINLTEKQCKLIIEK 96 (163)
Q Consensus 72 L~~a~~ea~~ii~~A~~~a~~~~~~ 96 (163)
+...+.....+...+...+....++
T Consensus 7 l~~l~~d~~~l~~~~~~~~~~~~~~ 31 (94)
T PF05957_consen 7 LEQLRADLEDLARSAADLAGEKADE 31 (94)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3333444444444443333333333
No 252
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=38.47 E-value=1.2e+02 Score=20.33 Aligned_cols=42 Identities=14% Similarity=0.151 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 33 WPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIA 74 (163)
Q Consensus 33 ~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~ 74 (163)
.+-+...+++|.+.+...+...+......+....+.+..|.+
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455777788888888888877776666666666666655544
No 253
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=38.36 E-value=1.5e+02 Score=23.60 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy2889 15 HSHGIRRTIKCCFTKKFIWPPLIKALDDR 43 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~~pi~~~l~~R 43 (163)
+|.++.+.++-.++.+++-||+.+.-.++
T Consensus 173 ~~~~~~y~~~~t~~~~~ig~~l~~l~~~~ 201 (281)
T PF06472_consen 173 PWAALIYAILGTLITHWIGPPLGRLNAEQ 201 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 46777788888888888999998876444
No 254
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=38.03 E-value=1.5e+02 Score=21.12 Aligned_cols=27 Identities=7% Similarity=0.027 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy2889 12 TGAHSHGIRRTIKCCFTKKFIWPPLIK 38 (163)
Q Consensus 12 ~~~~~~~i~Flil~~~l~~~l~~pi~~ 38 (163)
..++..++.|+|..+++.+=.|+.-.+
T Consensus 76 aell~E~fiF~Va~~li~~E~~Rs~~k 102 (134)
T PF07047_consen 76 AELLGEAFIFSVAAGLIIYEYWRSARK 102 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455778888888888777766655444
No 255
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=37.87 E-value=1.3e+02 Score=20.65 Aligned_cols=38 Identities=3% Similarity=-0.039 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 55 NSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKL 92 (163)
Q Consensus 55 ~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~ 92 (163)
++...+.+.+....++.|...-.-+.+-.++++..++.
T Consensus 11 ~~l~~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~ 48 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSSGSLAGDEAEELRSKAES 48 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Confidence 34445555555555555555544444333333333333
No 256
>PHA02973 hypothetical protein; Provisional
Probab=37.32 E-value=25 Score=24.01 Aligned_cols=23 Identities=9% Similarity=-0.216 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Q psy2889 17 HGIRRTIKCCFTKKFIWPPLIKA 39 (163)
Q Consensus 17 ~~i~Flil~~~l~~~l~~pi~~~ 39 (163)
.++.|++++.+.|+|=|.|-.++
T Consensus 4 ~l~fFi~FL~l~Y~fn~~pTNKm 26 (102)
T PHA02973 4 LIFFFILFLLLCYFFNFKRTNKM 26 (102)
T ss_pred HHHHHHHHHHHHHHhhccccchh
Confidence 34556666666777777776554
No 257
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=36.86 E-value=3.1e+02 Score=24.45 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2889 16 SHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIA 48 (163)
Q Consensus 16 ~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~ 48 (163)
+.++.+++..+++.|-.++- ..-|+.|...|.
T Consensus 7 vi~l~~~~~~~~~rk~~~k~-i~~Le~~k~~l~ 38 (560)
T PF06160_consen 7 VIVLIIYIIGYIYRKRYYKE-IDELEERKNELM 38 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 33333344444455555555 455777777764
No 258
>COG1766 fliF Flagellar basal body M-ring protein [Cell motility and secretion]
Probab=36.72 E-value=57 Score=29.09 Aligned_cols=31 Identities=13% Similarity=0.083 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy2889 15 HSHGIRRTIKCCFTKKFIWPPLIKALDDRKK 45 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~ 45 (163)
.+..+.+.++.|++.++++.|+..-+..|..
T Consensus 444 ~~~~~~~~l~~~lv~~~~~r~~i~~~~~~~~ 474 (545)
T COG1766 444 SLIPVALYLVVFLVLFIIVRPVIRPRRRRGA 474 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4555666677778888888888887776664
No 259
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=36.62 E-value=1.1e+02 Score=20.10 Aligned_cols=34 Identities=12% Similarity=0.087 Sum_probs=24.9
Q ss_pred chHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy2889 11 DTGA-HSHGIRRTIKCCFTKKFIWPPLIKALDDRK 44 (163)
Q Consensus 11 ~~~~-~~~~i~Flil~~~l~~~l~~pi~~~l~~R~ 44 (163)
.+++ +|..-...++++++--++|--..+-+|++-
T Consensus 43 GfPlgfw~aaQGsi~~fviLi~~Ya~~mnrlD~~~ 77 (81)
T PF13937_consen 43 GFPLGFWFAAQGSIIVFVILIFVYAWRMNRLDRKY 77 (81)
T ss_pred CCChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455 787788888888777788877777777653
No 260
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=36.44 E-value=43 Score=21.88 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q psy2889 15 HSHGIRRTIKCCFTKKFIWPPL 36 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~~pi 36 (163)
+...+.|+++++++.|++|+.+
T Consensus 51 i~~~il~~~l~~~~vk~~Fkd~ 72 (80)
T PF06196_consen 51 IGGPILFIILVWLMVKFFFKDI 72 (80)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC
Confidence 3445667777778888877643
No 261
>PHA02513 V1 structural protein V1; Reviewed
Probab=36.36 E-value=66 Score=22.52 Aligned_cols=26 Identities=4% Similarity=0.017 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy2889 16 SHGIRRTIKCCFTKKFIWPPLIKALD 41 (163)
Q Consensus 16 ~~~i~Flil~~~l~~~l~~pi~~~l~ 41 (163)
.-.+.|+.++.++.-.+++||.+...
T Consensus 67 ~k~ii~L~IFIliGivl~~pI~s~VN 92 (135)
T PHA02513 67 IGVLLGLFIFILIGIVLLPVITSQVN 92 (135)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 34567777888888899999988654
No 262
>PF06170 DUF983: Protein of unknown function (DUF983); InterPro: IPR009325 This family consists of several bacterial proteins of unknown function.
Probab=36.15 E-value=87 Score=20.67 Aligned_cols=30 Identities=13% Similarity=-0.062 Sum_probs=21.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy2889 11 DTGAHSHGIRRTIKCCFTKKFIWPPLIKAL 40 (163)
Q Consensus 11 ~~~~~~~~i~Flil~~~l~~~l~~pi~~~l 40 (163)
++...++++.++.+..++.-.+.+|++..+
T Consensus 51 ~pp~wv~~~i~~pl~~~l~l~lLr~~KG~~ 80 (86)
T PF06170_consen 51 RPPLWVHLAIWLPLTLALSLLLLRPVKGAL 80 (86)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 344456667777777777888888888765
No 263
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=35.76 E-value=69 Score=29.48 Aligned_cols=32 Identities=6% Similarity=-0.121 Sum_probs=26.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy2889 11 DTGAHSHGIRRTIKCCFTKKFIWPPLIKALDD 42 (163)
Q Consensus 11 ~~~~~~~~i~Flil~~~l~~~l~~pi~~~l~~ 42 (163)
+|.++|..+.++++++++..+++||+.+..++
T Consensus 292 s~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~ 323 (709)
T COG2274 292 SWKLTLIVLAAIPLNVLITLIFQPLLRRKTRK 323 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888999999999999989988876643
No 264
>PHA00739 V3 structural protein VP3
Probab=35.66 E-value=35 Score=22.54 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q psy2889 18 GIRRTIKCCFTKKFIWPPLIKALD 41 (163)
Q Consensus 18 ~i~Flil~~~l~~~l~~pi~~~l~ 41 (163)
-|.|+.++.++.-.+++||.+...
T Consensus 7 ~iifL~iFi~iGivlf~pIis~Vn 30 (92)
T PHA00739 7 QIIFLFIFILIGIVLFQPIISYVN 30 (92)
T ss_pred HHHHHHHHHHHHHhhcchhhhhhc
Confidence 466778888888899999987653
No 265
>PRK09702 PTS system arbutin-specific transporter subunit IIB; Provisional
Probab=35.31 E-value=44 Score=24.82 Aligned_cols=19 Identities=11% Similarity=-0.010 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy2889 13 GAHSHGIRRTIKCCFTKKF 31 (163)
Q Consensus 13 ~~~~~~i~Flil~~~l~~~ 31 (163)
++++.++-|++|.|++.||
T Consensus 16 Gl~~f~iYyfvF~flI~kf 34 (161)
T PRK09702 16 GLCFTLLYFVVFRTLILQF 34 (161)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 3344444444444444444
No 266
>MTH00261 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=35.10 E-value=72 Score=19.46 Aligned_cols=27 Identities=4% Similarity=-0.276 Sum_probs=14.5
Q ss_pred cccCchHH---HHHHHHHHHHHHHHHHHhH
Q psy2889 7 IQSADTGA---HSHGIRRTIKCCFTKKFIW 33 (163)
Q Consensus 7 ~l~~~~~~---~~~~i~Flil~~~l~~~l~ 33 (163)
+++.+..+ |..+.-|++++.++.--+|
T Consensus 3 qldlsly~nhyfvllllf~iliilisikfy 32 (68)
T MTH00261 3 QLDLSLYFNHYFVLLLLFFILIILISIKFY 32 (68)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 5666667766665554333
No 267
>PHA03066 Hypothetical protein; Provisional
Probab=34.79 E-value=39 Score=23.44 Aligned_cols=24 Identities=21% Similarity=0.096 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Q psy2889 16 SHGIRRTIKCCFTKKFIWPPLIKA 39 (163)
Q Consensus 16 ~~~i~Flil~~~l~~~l~~pi~~~ 39 (163)
..++-|++++.+.|+|=|.|-.++
T Consensus 5 ~~l~fFi~Fl~~~Y~~n~~PTNKl 28 (110)
T PHA03066 5 LYLLFFIIFLCISYYFNYYPTNKL 28 (110)
T ss_pred HHHHHHHHHHHHHHHHhhccChhH
Confidence 355666666667777777776554
No 268
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=34.59 E-value=2e+02 Score=21.57 Aligned_cols=16 Identities=13% Similarity=-0.006 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy2889 103 EEANIILYNARVEIIK 118 (163)
Q Consensus 103 ~e~~~~~~~a~~~i~~ 118 (163)
.+++.+.......++.
T Consensus 154 ~~iqkltd~~i~~id~ 169 (179)
T cd00520 154 EDLQKLTDEYIKKIDE 169 (179)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 269
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=34.32 E-value=1.1e+02 Score=18.43 Aligned_cols=44 Identities=16% Similarity=0.039 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 81 NRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIAR 124 (163)
Q Consensus 81 ~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~ 124 (163)
..+..-+...+.-..+++.....|.+.++++-..+++.-+.++.
T Consensus 11 ~yI~~Lk~kLd~Kk~Eil~~ln~EY~kiLk~r~~~lEevKrk~L 54 (56)
T PF08112_consen 11 KYISILKSKLDEKKSEILSNLNMEYEKILKQRRKELEEVKRKAL 54 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555555556666666666666666666666555544
No 270
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=34.30 E-value=1.2e+02 Score=19.78 Aligned_cols=23 Identities=9% Similarity=-0.070 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Q psy2889 16 SHGIRRTIKCCFTKKFIWPPLIKAL 40 (163)
Q Consensus 16 ~~~i~Flil~~~l~~~l~~pi~~~l 40 (163)
|.++..++++++| |..+.+-.+.
T Consensus 7 ~ellIIlvIvlll--FG~kKLP~l~ 29 (78)
T PRK00720 7 WHWLIVLAVVLLL--FGRGKISELM 29 (78)
T ss_pred HHHHHHHHHHHHH--hCcchHHHHH
Confidence 5544444433333 3444444443
No 271
>PRK06397 V-type ATP synthase subunit H; Validated
Probab=33.66 E-value=1.6e+02 Score=20.18 Aligned_cols=50 Identities=12% Similarity=0.184 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 57 EKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEAN 106 (163)
Q Consensus 57 ~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~ 106 (163)
...+......+.+..+.+|+++-..-+.....+....+...+.+++++++
T Consensus 22 ~dkEI~~~k~eqe~~iKEa~~k~ee~~~kteeE~~~~Y~~~l~e~RkeaE 71 (111)
T PRK06397 22 IDKEIANIKNEQENEIKEAKSKYEEKAKKTEEESLNMYNAALMEARKEAE 71 (111)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 45667777778888888888777777777777777777776666666554
No 272
>PF14613 DUF4449: Protein of unknown function (DUF4449)
Probab=33.56 E-value=2e+02 Score=21.41 Aligned_cols=19 Identities=16% Similarity=0.211 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy2889 70 KELIATHEENKNRINLTEK 88 (163)
Q Consensus 70 ~~L~~a~~ea~~ii~~A~~ 88 (163)
..+-+++.+++...+.++.
T Consensus 52 ~~l~~i~~ea~ra~~~~~~ 70 (164)
T PF14613_consen 52 RFLYDIHQEADRAKEAAKS 70 (164)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3344444444444444444
No 273
>MTH00158 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=33.47 E-value=79 Score=16.68 Aligned_cols=10 Identities=10% Similarity=-0.263 Sum_probs=5.2
Q ss_pred cccccCchHH
Q psy2889 5 YAIQSADTGA 14 (163)
Q Consensus 5 ~~~l~~~~~~ 14 (163)
+|++.|-..+
T Consensus 1 MPQmsPm~W~ 10 (32)
T MTH00158 1 MPQMSPMNWL 10 (32)
T ss_pred CCCcccHHHH
Confidence 3566664443
No 274
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.38 E-value=2.6e+02 Score=22.59 Aligned_cols=25 Identities=4% Similarity=0.141 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 105 ANIILYNARVEIIKQINIARENLHN 129 (163)
Q Consensus 105 ~~~~~~~a~~~i~~e~~~a~~~l~~ 129 (163)
.+..+...+..|....+.....+|.
T Consensus 85 l~~eI~~~~~~I~~r~~~l~~raRA 109 (265)
T COG3883 85 LQKEIAELKENIVERQELLKKRARA 109 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555565555555555554
No 275
>PRK14143 heat shock protein GrpE; Provisional
Probab=33.29 E-value=2.4e+02 Score=22.28 Aligned_cols=12 Identities=0% Similarity=0.216 Sum_probs=6.9
Q ss_pred HhhhcCHHHHHH
Q psy2889 143 LNNKITIEVNSS 154 (163)
Q Consensus 143 l~~~i~~~~~~~ 154 (163)
+|...||..|..
T Consensus 173 ~G~~FDP~~HEA 184 (238)
T PRK14143 173 VGQEFDPNLHEA 184 (238)
T ss_pred CCCCCChHHhhe
Confidence 345666666654
No 276
>PF04631 Baculo_44: Baculovirus hypothetical protein; InterPro: IPR006725 This family includes several hypothetical baculoviral proteins, with predicted molecular weights of approximately 44 kDa.
Probab=33.12 E-value=75 Score=26.78 Aligned_cols=14 Identities=7% Similarity=-0.173 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHhHH
Q psy2889 21 RTIKCCFTKKFIWP 34 (163)
Q Consensus 21 Flil~~~l~~~l~~ 34 (163)
++|++|++++.+|.
T Consensus 6 ~ii~l~~~y~Ply~ 19 (371)
T PF04631_consen 6 VIIFLYLLYIPLYY 19 (371)
T ss_pred hHHHHHHHHHHHHH
Confidence 44444444444443
No 277
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=33.08 E-value=1.6e+02 Score=20.02 Aligned_cols=12 Identities=8% Similarity=0.149 Sum_probs=7.0
Q ss_pred hHHHHHHHHHHH
Q psy2889 32 IWPPLIKALDDR 43 (163)
Q Consensus 32 l~~pi~~~l~~R 43 (163)
+|++|+++|=.+
T Consensus 52 vyk~VG~vlv~~ 63 (110)
T TIGR02338 52 VYKSVGNLLVKT 63 (110)
T ss_pred hHHHhchhhhee
Confidence 566666666543
No 278
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=32.93 E-value=93 Score=17.32 Aligned_cols=20 Identities=5% Similarity=-0.300 Sum_probs=10.7
Q ss_pred CchHH-HHHHHHHHHHHHHHH
Q psy2889 10 ADTGA-HSHGIRRTIKCCFTK 29 (163)
Q Consensus 10 ~~~~~-~~~~i~Flil~~~l~ 29 (163)
+|+.+ +..+..|++++.++.
T Consensus 7 ~dfylc~l~~llflv~imlii 27 (43)
T PF11395_consen 7 FDFYLCFLSFLLFLVIIMLII 27 (43)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 45555 555556665554433
No 279
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=32.90 E-value=1.2e+02 Score=18.70 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 33 WPPLIKALDDRKKKIADILAAANSEKEKVSY 63 (163)
Q Consensus 33 ~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~ 63 (163)
+.-+..-+.+-+..+...-.+-+....+.+.
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433333333333333
No 280
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=32.73 E-value=2.2e+02 Score=21.53 Aligned_cols=20 Identities=15% Similarity=0.059 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy2889 101 ATEEANIILYNARVEIIKQI 120 (163)
Q Consensus 101 A~~e~~~~~~~a~~~i~~e~ 120 (163)
.+.+++.+.......|+...
T Consensus 156 ~e~eiQkltd~~i~~id~~~ 175 (185)
T PRK00083 156 AEDEIQKLTDKYIKKIDELL 175 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333
No 281
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=32.65 E-value=2.5e+02 Score=25.45 Aligned_cols=18 Identities=6% Similarity=-0.176 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhHHHHHHH
Q psy2889 22 TIKCCFTKKFIWPPLIKA 39 (163)
Q Consensus 22 lil~~~l~~~l~~pi~~~ 39 (163)
+++++++.+++.+++.+.
T Consensus 305 ~~l~~~~~~~~~~~~~~~ 322 (708)
T TIGR01193 305 IPVYAVIIILFKRTFNKL 322 (708)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444433
No 282
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=32.43 E-value=3.9e+02 Score=24.38 Aligned_cols=16 Identities=13% Similarity=-0.114 Sum_probs=9.5
Q ss_pred HHHHHHhHHHHHHHHH
Q psy2889 26 CFTKKFIWPPLIKALD 41 (163)
Q Consensus 26 ~~l~~~l~~pi~~~l~ 41 (163)
+++.+.+.+||.+..+
T Consensus 424 ~~~a~~i~~pI~~L~~ 439 (703)
T TIGR03785 424 FGFASWISWRIRRLSD 439 (703)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445566788776543
No 283
>PF02203 TarH: Tar ligand binding domain homologue; InterPro: IPR003122 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the ligand-binding domain found in a number of methyl-accepting chemotaxis receptors.; GO: 0004888 transmembrane signaling receptor activity, 0006935 chemotaxis, 0007165 signal transduction, 0016020 membrane; PDB: 2ASR_A 3ATP_A 2D4U_A 2LIG_A 1VLS_A 1LIH_A 1WAT_B 1VLT_B 1WAS_A 1JMW_A.
Probab=32.30 E-value=1.8e+02 Score=20.55 Aligned_cols=32 Identities=9% Similarity=-0.281 Sum_probs=4.4
Q ss_pred cccccCchHHHHHHHHHHHHHHHHHHHhHHHH
Q psy2889 5 YAIQSADTGAHSHGIRRTIKCCFTKKFIWPPL 36 (163)
Q Consensus 5 ~~~l~~~~~~~~~~i~Flil~~~l~~~l~~pi 36 (163)
++-+++...+++.+..|+++++++.-+.|--+
T Consensus 2 l~nlsI~~~L~~~l~~~~~ll~~~~~~~~~~l 33 (171)
T PF02203_consen 2 LKNLSIRTKLLLVLALFLLLLLVVGGLGFWGL 33 (171)
T ss_dssp -----------------------HHCCCCCCH
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666665554333
No 284
>PHA03399 pif3 per os infectivity factor 3; Provisional
Probab=32.29 E-value=1.1e+02 Score=23.68 Aligned_cols=30 Identities=3% Similarity=-0.218 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy2889 16 SHGIRRTIKCCFTKKFIWPPLIKALDDRKK 45 (163)
Q Consensus 16 ~~~i~Flil~~~l~~~l~~pi~~~l~~R~~ 45 (163)
|.++.+++++++++.+...-+..+.....+
T Consensus 3 ~~~~~~livl~iv~~~~~~~~~~~~~~~~~ 32 (200)
T PHA03399 3 WGLLVLLIILLIVYYYTLKFVQQLNLNDDE 32 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 555555555555555556556555544433
No 285
>PF14184 YrvL: Regulatory protein YrvL
Probab=31.84 E-value=59 Score=23.27 Aligned_cols=31 Identities=3% Similarity=-0.179 Sum_probs=22.4
Q ss_pred ccccccccCchHHHHHHHHHHHHHHHHHHHh
Q psy2889 2 GLIYAIQSADTGAHSHGIRRTIKCCFTKKFI 32 (163)
Q Consensus 2 ~~~~~~l~~~~~~~~~~i~Flil~~~l~~~l 32 (163)
+|++.+......-.+.++-|.+++.++..++
T Consensus 26 ~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~ 56 (132)
T PF14184_consen 26 VGIFHLLGIEYESVGSLLLFFLIIFVLGLPF 56 (132)
T ss_pred HHHHHHhCcccccHHHHHHHHHHHHHHHHHH
Confidence 4566677777777888888888888775543
No 286
>TIGR03647 Na_symport_sm probable solute:sodium symporter small subunit. Members of this family are highly hydrophobic bacterial proteins of about 90 amino acids in length. Members usually are found immediately upstream (sometimes fused to) a member of the solute:sodium symporter family, and therefore are a putative sodium:solute symporter small subunit. Members tend to be found in aquatic species, especially those from marine or other high salt environments.
Probab=31.57 E-value=1.5e+02 Score=19.21 Aligned_cols=33 Identities=12% Similarity=0.106 Sum_probs=25.0
Q ss_pred chHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy2889 11 DTGA-HSHGIRRTIKCCFTKKFIWPPLIKALDDR 43 (163)
Q Consensus 11 ~~~~-~~~~i~Flil~~~l~~~l~~pi~~~l~~R 43 (163)
++++ +|..-...++.+++--++|--..+-+|++
T Consensus 39 GfPlgfw~aaQGsi~~fviLi~~Ya~~m~rlD~~ 72 (77)
T TIGR03647 39 GFPLGFWFAQQGSIYVFVVLIFVYAWRMNRLDRK 72 (77)
T ss_pred CCChHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555 78888888888888888887777777754
No 287
>PTZ00473 Plasmodium Vir superfamily; Provisional
Probab=31.56 E-value=58 Score=27.86 Aligned_cols=36 Identities=14% Similarity=0.131 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy2889 15 HSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILA 52 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~ 52 (163)
.+.++.+++++|+|+| |.||...+..+.++-+..+.
T Consensus 273 ~Fs~lg~~l~fF~lYK--fTPlGs~f~~~~kr~rr~Wr 308 (420)
T PTZ00473 273 SFSALGGSLSLFILYK--FTPLGSLFGPDKKRRRRRWR 308 (420)
T ss_pred hHHHHHHHHHHHHHHh--cccchhhhcchhHHHHHHHh
Confidence 3444555555666666 78999999877766655443
No 288
>PRK04598 tatA twin arginine translocase protein A; Provisional
Probab=31.27 E-value=1.4e+02 Score=19.55 Aligned_cols=9 Identities=0% Similarity=-0.253 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q psy2889 16 SHGIRRTIK 24 (163)
Q Consensus 16 ~~~i~Flil 24 (163)
|.++..+++
T Consensus 7 ~elliIlvi 15 (81)
T PRK04598 7 WQLLIIAVI 15 (81)
T ss_pred HHHHHHHHH
Confidence 444443333
No 289
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=31.24 E-value=2.6e+02 Score=21.90 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 34 PPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQC 90 (163)
Q Consensus 34 ~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a 90 (163)
.|- ++++..-......+..+.....++-......+.++..........-..|+.-.
T Consensus 24 Dp~-~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al 79 (225)
T COG1842 24 DPE-KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELAL 79 (225)
T ss_pred CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 66666666667777777777777777777777777777777776666665443
No 290
>PRK05978 hypothetical protein; Provisional
Probab=31.14 E-value=96 Score=22.73 Aligned_cols=27 Identities=11% Similarity=-0.087 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy2889 15 HSHGIRRTIKCCFTKKFIWPPLIKALD 41 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~~pi~~~l~ 41 (163)
.++++.++.+.+++.-++.+|++..+-
T Consensus 99 w~~~~i~~~l~lil~L~LL~p~KG~lv 125 (148)
T PRK05978 99 WLHLAIWLPITLIASLALLQPIKGAVI 125 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666677778888877663
No 291
>PRK14155 heat shock protein GrpE; Provisional
Probab=30.93 E-value=2.5e+02 Score=21.71 Aligned_cols=37 Identities=11% Similarity=0.106 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 64 DRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKK 100 (163)
Q Consensus 64 ~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~ 100 (163)
...+++.++..+..+.+.++..+.++.+..+......
T Consensus 28 e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~ 64 (208)
T PRK14155 28 EVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQK 64 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444455555444444444444444333
No 292
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=30.92 E-value=4.3e+02 Score=24.37 Aligned_cols=20 Identities=15% Similarity=0.358 Sum_probs=12.3
Q ss_pred HHHHHHHHHhHHHHHHHHHH
Q psy2889 23 IKCCFTKKFIWPPLIKALDD 42 (163)
Q Consensus 23 il~~~l~~~l~~pi~~~l~~ 42 (163)
+++|++.+.+.+|+..+...
T Consensus 312 ~~~~~~~~~i~~pl~~l~~~ 331 (921)
T PRK15347 312 VLFLLLRRYLAKPLWRFVDI 331 (921)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445566667888776554
No 293
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=30.89 E-value=2.3e+02 Score=21.22 Aligned_cols=18 Identities=17% Similarity=-0.003 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy2889 101 ATEEANIILYNARVEIIK 118 (163)
Q Consensus 101 A~~e~~~~~~~a~~~i~~ 118 (163)
...+++.+....-..++.
T Consensus 147 ~~~~iQkltd~~i~~id~ 164 (176)
T TIGR00496 147 LQEEIQKLTDEYIKKIDE 164 (176)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333343344443333333
No 294
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=30.88 E-value=2.3e+02 Score=24.77 Aligned_cols=12 Identities=8% Similarity=-0.059 Sum_probs=4.6
Q ss_pred HHHHHHhHHHHH
Q psy2889 26 CFTKKFIWPPLI 37 (163)
Q Consensus 26 ~~l~~~l~~pi~ 37 (163)
+++.+++.+++.
T Consensus 168 ~~~~~~~~~~~~ 179 (571)
T TIGR02203 168 SILMRRVSKRLR 179 (571)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 295
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=30.80 E-value=1.7e+02 Score=19.83 Aligned_cols=13 Identities=31% Similarity=0.340 Sum_probs=6.5
Q ss_pred HhHHHHHHHHHHH
Q psy2889 31 FIWPPLIKALDDR 43 (163)
Q Consensus 31 ~l~~pi~~~l~~R 43 (163)
++.+++..++...
T Consensus 23 ~~~~~~~~~l~~k 35 (108)
T PF09682_consen 23 IIVKYVIKYLKKK 35 (108)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555444
No 296
>PRK14139 heat shock protein GrpE; Provisional
Probab=30.69 E-value=2.4e+02 Score=21.41 Aligned_cols=11 Identities=9% Similarity=0.154 Sum_probs=5.9
Q ss_pred HhhhcCHHHHH
Q psy2889 143 LNNKITIEVNS 153 (163)
Q Consensus 143 l~~~i~~~~~~ 153 (163)
+|...||..|.
T Consensus 135 ~G~~FDP~~HE 145 (185)
T PRK14139 135 VGEKFDPHQHQ 145 (185)
T ss_pred CCCCCChHHhh
Confidence 34555665554
No 297
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=30.49 E-value=33 Score=24.15 Aligned_cols=6 Identities=17% Similarity=0.135 Sum_probs=2.1
Q ss_pred HHHHHH
Q psy2889 23 IKCCFT 28 (163)
Q Consensus 23 il~~~l 28 (163)
|++++|
T Consensus 9 i~~i~l 14 (130)
T PF12273_consen 9 IVAILL 14 (130)
T ss_pred HHHHHH
Confidence 333333
No 298
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.
Probab=30.45 E-value=48 Score=26.62 Aligned_cols=15 Identities=7% Similarity=-0.177 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy2889 15 HSHGIRRTIKCCFTK 29 (163)
Q Consensus 15 ~~~~i~Flil~~~l~ 29 (163)
|+..|.|.|.||+++
T Consensus 34 f~~~i~~~~~y~~~y 48 (285)
T TIGR00782 34 FYATIVWGFGYLVAY 48 (285)
T ss_pred HHHHHHHHHHHHHHh
Confidence 566666666665443
No 299
>KOG0977|consensus
Probab=30.38 E-value=4e+02 Score=23.89 Aligned_cols=41 Identities=10% Similarity=0.037 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 88 KQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLH 128 (163)
Q Consensus 88 ~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~ 128 (163)
..=......++.+.+.+-+.+....+.+|+.-...=..+++
T Consensus 241 ~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~ 281 (546)
T KOG0977|consen 241 EYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIR 281 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33345556666666666666666666666665555555555
No 300
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=30.26 E-value=2.1e+02 Score=20.66 Aligned_cols=68 Identities=7% Similarity=-0.014 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 14 AHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNR 82 (163)
Q Consensus 14 ~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~i 82 (163)
+....+.|++|+.+|.+. .+.+...|++=...++.--.+.+-...+.+.++...+....+.......+
T Consensus 8 ~~iiAiAf~vL~I~li~t-lkkv~~tldevakt~~~l~~qv~gi~~eT~~Ll~K~N~L~eDvq~Kv~tl 75 (139)
T COG4768 8 LAIIAIAFLVLVIYLIIT-LKKVSKTLDEVAKTLKGLTSQVDGITHETEELLHKTNTLAEDVQGKVATL 75 (139)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhH
Confidence 356678888888777664 56788888888777777777777777777777777766666665554443
No 301
>PF03911 Sec61_beta: Sec61beta family; InterPro: IPR005609 This family consists of Sec61 subunit beta and homologues like archaeal SecG. This subunit is a component of the Sec61/SecYEG protein secretory system.; PDB: 2WWA_C 2WW9_C 3BO0_C 3KCR_C 3BO1_C 2YXR_C 3DKN_C 2YXQ_C 1RH5_C 1RHZ_C ....
Probab=30.11 E-value=44 Score=18.86 Aligned_cols=25 Identities=12% Similarity=-0.084 Sum_probs=15.9
Q ss_pred cccCchHH-HHHHHHHHHHHHHHHHH
Q psy2889 7 IQSADTGA-HSHGIRRTIKCCFTKKF 31 (163)
Q Consensus 7 ~l~~~~~~-~~~~i~Flil~~~l~~~ 31 (163)
.+..+|.. +...+.|.+.+++|+.+
T Consensus 15 giki~P~~Vl~~si~fi~~V~~Lhi~ 40 (41)
T PF03911_consen 15 GIKIDPKTVLIISIAFIAIVILLHIF 40 (41)
T ss_dssp SS-BSCCHHHHHHHHHHHHHHHHT-S
T ss_pred cceeCCeehHHHHHHHHHHHHHHhhh
Confidence 34555543 67778888888887654
No 302
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=30.09 E-value=3.7e+02 Score=23.32 Aligned_cols=14 Identities=14% Similarity=-0.029 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q psy2889 16 SHGIRRTIKCCFTK 29 (163)
Q Consensus 16 ~~~i~Flil~~~l~ 29 (163)
|+++.-.++++++.
T Consensus 261 wtl~Qq~i~~~~l~ 274 (429)
T PRK00247 261 WTLIQNIIMYLILE 274 (429)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444444
No 303
>PF04020 DUF360: Membrane protein of unknown function; InterPro: IPR007165 These proteins are predicted transmembrane proteins with probably four transmembrane spans. The function of these bacterial proteins is unknown. The sequences do not appear to contain any conserved polar residues that could form an active site.
Probab=29.79 E-value=81 Score=21.63 Aligned_cols=23 Identities=9% Similarity=0.224 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Q psy2889 15 HSHGIRRTIKCCFTKKFIWPPLI 37 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~~pi~ 37 (163)
++..+.+.+++.+++.+++|.+.
T Consensus 30 ~~~al~~a~vl~lln~~l~Pil~ 52 (108)
T PF04020_consen 30 FGTALVAALVLGLLNALLRPILV 52 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888877666554
No 304
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=29.69 E-value=80 Score=18.74 Aligned_cols=14 Identities=7% Similarity=-0.147 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHH
Q psy2889 15 HSHGIRRTIKCCFT 28 (163)
Q Consensus 15 ~~~~i~Flil~~~l 28 (163)
|+..|.|.+.++++
T Consensus 28 f~~tivfa~~Y~~~ 41 (51)
T PF14715_consen 28 FYGTIVFAVGYLVL 41 (51)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555554
No 305
>PF02936 COX4: Cytochrome c oxidase subunit IV; InterPro: IPR004203 Cytochrome c oxidase, a 13 sub-unit complex (1.9.3.1 from EC) is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium discoideum (Slime mould) member of this family is called COX VI. The Saccharomyces cerevisiae protein YGX6_YEAST appears to be the yeast COX IV subunit.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABK_Q 3AG1_Q 3ASN_Q 1OCZ_D 2EIN_Q 2OCC_D 2YBB_O 3AG3_D 1OCO_Q 1V55_Q ....
Probab=29.68 E-value=47 Score=24.09 Aligned_cols=25 Identities=16% Similarity=0.454 Sum_probs=11.3
Q ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHH
Q psy2889 18 GIRRTIKC-CFTKKFIWPPLIKALDD 42 (163)
Q Consensus 18 ~i~Flil~-~~l~~~l~~pi~~~l~~ 42 (163)
+|.|.+++ ++++.|++||+-..|.+
T Consensus 84 ~i~~s~~l~~~~r~~~~~~~P~T~~~ 109 (142)
T PF02936_consen 84 FIGFSVLLFIWQRSYVYPPLPHTFSK 109 (142)
T ss_dssp HHHHHHHHHHHHHHHT-----GGGSH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCcCH
Confidence 34444444 45566899998777754
No 306
>PRK10404 hypothetical protein; Provisional
Probab=29.65 E-value=1.8e+02 Score=19.71 Aligned_cols=39 Identities=3% Similarity=0.114 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 57 EKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIE 95 (163)
Q Consensus 57 ~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~ 95 (163)
...+...+..+.+..+..+-..+.+-..+.+..++....
T Consensus 10 l~~dl~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~ 48 (101)
T PRK10404 10 IDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALD 48 (101)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 334444555555555544444444333333333333333
No 307
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=29.62 E-value=1.3e+02 Score=20.60 Aligned_cols=31 Identities=10% Similarity=0.178 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 34 PPLIKALDDRKKKIADILAAANSEKEKVSYD 64 (163)
Q Consensus 34 ~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~ 64 (163)
.-+.++++.|-++++.++..-++....++..
T Consensus 67 ~Qvv~~l~RRiDYV~~Ni~tleKql~~aE~k 97 (99)
T PF13758_consen 67 EQVVDVLSRRIDYVQQNIETLEKQLEAAENK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4478899999999999998888777776654
No 308
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=29.55 E-value=3.1e+02 Score=22.36 Aligned_cols=65 Identities=11% Similarity=0.032 Sum_probs=35.7
Q ss_pred ccCchHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 8 QSADTGAHSHGIRRTIKC---CFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKEL 72 (163)
Q Consensus 8 l~~~~~~~~~~i~Flil~---~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L 72 (163)
|++-+.++..+-.|+-|- ++=..++-+|+.+-|+++....+.+.++.+....+++.....++.-.
T Consensus 2 I~~RyhivSl~aVFlALavGI~lG~~~l~~~l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~ 69 (308)
T PF11382_consen 2 IDFRYHIVSLAAVFLALAVGIVLGSGPLQPNLIDSLEDQFDSLREENDELRAELDALQAQLNAADQFI 69 (308)
T ss_pred cChhhHHHHHHHHHHHHHHHHHhcchhhchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445433333343332 22234466778888887777777776666665555555554444433
No 309
>MTH00260 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=29.38 E-value=75 Score=18.99 Aligned_cols=31 Identities=6% Similarity=-0.275 Sum_probs=12.2
Q ss_pred cccccC-chHH-HHHHHHHHHHHHHHHHHhHHH
Q psy2889 5 YAIQSA-DTGA-HSHGIRRTIKCCFTKKFIWPP 35 (163)
Q Consensus 5 ~~~l~~-~~~~-~~~~i~Flil~~~l~~~l~~p 35 (163)
||++.| ++-+ +......++++..+.+|.+.|
T Consensus 1 MPQmsPm~W~~l~~~f~~~~~~~~~~~~~~~~~ 33 (53)
T MTH00260 1 MPHLSPMSWLTAMIIFWFILLIFASSMWWSQSP 33 (53)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345555 3333 223333333333444444433
No 310
>PRK13414 flagellar biosynthesis protein FliZ; Provisional
Probab=29.20 E-value=1.8e+02 Score=21.89 Aligned_cols=37 Identities=3% Similarity=-0.030 Sum_probs=20.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy2889 10 ADTGAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKK 46 (163)
Q Consensus 10 ~~~~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~ 46 (163)
+|.+-+++++-|+++++++..++.+.|...=..+.+.
T Consensus 60 fNisDLv~ivLF~L~~~~~~FL~KKmi~~~Kk~k~~~ 96 (209)
T PRK13414 60 FNISDLVTIVLFFLIFFFIIFLFKKMILNSKKSKNEQ 96 (209)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchh
Confidence 3444466677776666666555555555544444433
No 311
>PRK14157 heat shock protein GrpE; Provisional
Probab=29.12 E-value=2.9e+02 Score=21.79 Aligned_cols=9 Identities=0% Similarity=-0.008 Sum_probs=4.1
Q ss_pred hhcCHHHHH
Q psy2889 145 NKITIEVNS 153 (163)
Q Consensus 145 ~~i~~~~~~ 153 (163)
...||..|.
T Consensus 177 e~FDP~~HE 185 (227)
T PRK14157 177 EDFDPTKHD 185 (227)
T ss_pred CCCChhhhc
Confidence 444444443
No 312
>PRK13561 putative diguanylate cyclase; Provisional
Probab=28.84 E-value=2.9e+02 Score=24.53 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=15.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q psy2889 23 IKCCFTKKFIWPPLIKALDDRKK 45 (163)
Q Consensus 23 il~~~l~~~l~~pi~~~l~~R~~ 45 (163)
++.|++.+.+.+|+..+.+.-+.
T Consensus 162 ~l~~~~~~~i~~PL~~l~~~~~~ 184 (651)
T PRK13561 162 AISWCINRLIVHPLRNIARELND 184 (651)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHH
Confidence 34456778888999887666443
No 313
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=28.78 E-value=2.3e+02 Score=20.63 Aligned_cols=29 Identities=14% Similarity=0.130 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 73 IATHEENKNRINLTEKQCKLIIEKSKKKA 101 (163)
Q Consensus 73 ~~a~~ea~~ii~~A~~~a~~~~~~~~~~A 101 (163)
.+++..+++++..|.........+.+.++
T Consensus 64 ~dak~kAEkiL~aal~~ske~m~~~l~e~ 92 (144)
T PF11657_consen 64 EDAKEKAEKILNAALAASKEAMNKILQES 92 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777665555444444433
No 314
>PF05366 Sarcolipin: Sarcolipin; InterPro: IPR008028 Sarcolipin is a 31 amino acid integral membrane protein that regulates Ca-ATPase activity in skeletal muscle [].; GO: 0030234 enzyme regulator activity, 0016020 membrane; PDB: 1JDM_A.
Probab=28.75 E-value=78 Score=16.46 Aligned_cols=11 Identities=9% Similarity=-0.022 Sum_probs=6.0
Q ss_pred HHHHHHHHHHH
Q psy2889 19 IRRTIKCCFTK 29 (163)
Q Consensus 19 i~Flil~~~l~ 29 (163)
...+||+|+|.
T Consensus 16 litvilmwllv 26 (31)
T PF05366_consen 16 LITVILMWLLV 26 (31)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 34456666654
No 315
>COG3149 PulM Type II secretory pathway, component PulM [Intracellular trafficking and secretion]
Probab=28.41 E-value=2.6e+02 Score=21.12 Aligned_cols=18 Identities=22% Similarity=0.517 Sum_probs=11.1
Q ss_pred HHHHHHHHHhHHHHHHHH
Q psy2889 23 IKCCFTKKFIWPPLIKAL 40 (163)
Q Consensus 23 il~~~l~~~l~~pi~~~l 40 (163)
+++.++|..+|.|...-+
T Consensus 46 L~Lvi~Y~~~WqP~~eri 63 (181)
T COG3149 46 LLLVILYLLIWQPLSERI 63 (181)
T ss_pred HHHHHHHHHHhccHHHHH
Confidence 344456667899975433
No 316
>PRK14153 heat shock protein GrpE; Provisional
Probab=28.41 E-value=2.7e+02 Score=21.30 Aligned_cols=9 Identities=0% Similarity=0.014 Sum_probs=4.0
Q ss_pred hhcCHHHHH
Q psy2889 145 NKITIEVNS 153 (163)
Q Consensus 145 ~~i~~~~~~ 153 (163)
...||..|.
T Consensus 140 ~~FDP~~HE 148 (194)
T PRK14153 140 EEFDPHRHE 148 (194)
T ss_pred CCCChhHhc
Confidence 444444443
No 317
>KOG4031|consensus
Probab=28.30 E-value=2.9e+02 Score=21.54 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 72 LIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIA 123 (163)
Q Consensus 72 L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a 123 (163)
+...|.+..+.+.+--..-+...++.+++|+++++.-..+-...++..+...
T Consensus 108 IRkWkeeQ~~rl~ekD~~sek~k~ElrekAkKelddwy~~~~ek~~k~~~~n 159 (216)
T KOG4031|consen 108 IRKWKEEQMKRLQEKDEASEKLKEELREKAKKELDDWYDQQNEKLEKTKANN 159 (216)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444455555555555555555555444444444433
No 318
>PTZ00229 variable surface protein Vir30; Provisional
Probab=28.24 E-value=34 Score=28.31 Aligned_cols=33 Identities=15% Similarity=0.129 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2889 14 AHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIA 48 (163)
Q Consensus 14 ~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~ 48 (163)
++.++|.++.++++++| |.|++..|..+..++.
T Consensus 248 ~~gs~~gl~~~f~~~YK--FTP~G~~l~~~k~k~~ 280 (317)
T PTZ00229 248 VTGTIVGLIPLVGILYK--FTPMGQLLKPKKGKLM 280 (317)
T ss_pred hhhhhhhHHhHHhhhhc--ccchhHHhhhcccchh
Confidence 46778888888888888 7899999988755544
No 319
>PRK10633 hypothetical protein; Provisional
Probab=28.20 E-value=89 Score=20.45 Aligned_cols=19 Identities=21% Similarity=0.334 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHhHH
Q psy2889 16 SHGIRRTIKCCFTKKFIWP 34 (163)
Q Consensus 16 ~~~i~Flil~~~l~~~l~~ 34 (163)
...+.|.++++++.|++|+
T Consensus 52 ~~p~lfi~l~~~~Vk~vFk 70 (80)
T PRK10633 52 LLPLLFILLCWLMVKFIFR 70 (80)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3346677777778788776
No 320
>PF07208 DUF1414: Protein of unknown function (DUF1414); InterPro: IPR009857 This family consists of several hypothetical bacterial proteins of around 70 residues in length. Members of this family are often referred to as YejL. The function of this family is unknown.; PDB: 2JPQ_A 2JUZ_B 2JUW_B 2QTI_A 2OTA_A 2JR2_A 2JRX_A.
Probab=28.07 E-value=98 Score=17.89 Aligned_cols=26 Identities=12% Similarity=0.220 Sum_probs=19.6
Q ss_pred HHHHHHHhhhcCHHHHHHHHHHHHhh
Q psy2889 137 KSAEKILNNKITIEVNSSLLNQLKIE 162 (163)
Q Consensus 137 ~~a~kll~~~i~~~~~~~li~~~i~~ 162 (163)
.++..+|..++.+..+..+.+.|-+-
T Consensus 14 N~vTniln~~V~~~qR~~iAe~Fa~A 39 (44)
T PF07208_consen 14 NMVTNILNTSVPPAQRQAIAEKFAQA 39 (44)
T ss_dssp HHHHHHHHHCS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 45667888899888888888888653
No 321
>COG4726 PilX Tfp pilus assembly protein PilX [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=28.02 E-value=2.8e+02 Score=21.33 Aligned_cols=57 Identities=5% Similarity=-0.122 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 17 HGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIAT 75 (163)
Q Consensus 17 ~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a 75 (163)
.+|.-+++++++.-+...-...++.+ ++|.....+..-+-+.|+..+.+-|..+..+
T Consensus 16 ~LivvL~~LvvltLl~l~~~r~~llq--eRiSaN~~D~~lAfqaAEaaLr~~E~~i~n~ 72 (196)
T COG4726 16 ALIVVLMVLVVLTLLGLAAARSVLLQ--ERISANERDRSLAFQAAEAALREGELQINNA 72 (196)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444444455555555666666654 3466666666666677777777777766554
No 322
>PRK14151 heat shock protein GrpE; Provisional
Probab=27.92 E-value=2.6e+02 Score=20.96 Aligned_cols=13 Identities=8% Similarity=0.120 Sum_probs=7.3
Q ss_pred HhhhcCHHHHHHH
Q psy2889 143 LNNKITIEVNSSL 155 (163)
Q Consensus 143 l~~~i~~~~~~~l 155 (163)
+|...||..|..+
T Consensus 126 ~G~~FDP~~HEAv 138 (176)
T PRK14151 126 HGEPFNPEHHQAM 138 (176)
T ss_pred CCCCCCHHHhhcc
Confidence 3456666666543
No 323
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=27.73 E-value=2.5e+02 Score=20.64 Aligned_cols=17 Identities=0% Similarity=-0.130 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy2889 15 HSHGIRRTIKCCFTKKF 31 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~ 31 (163)
+..++.+++.+.++.-.
T Consensus 11 laK~vTvVvaI~~vv~~ 27 (155)
T PF08496_consen 11 LAKIVTVVVAILAVVGL 27 (155)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555544333
No 324
>COG3190 FliO Flagellar biogenesis protein [Cell motility and secretion]
Probab=27.52 E-value=77 Score=22.97 Aligned_cols=22 Identities=14% Similarity=-0.050 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q psy2889 15 HSHGIRRTIKCCFTKKFIWPPL 36 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~~pi 36 (163)
+..+.-|+++.|+++||...|.
T Consensus 32 ~~iL~lil~~~wl~kr~~~~~~ 53 (137)
T COG3190 32 ILILALILFLAWLVKRLGRAPL 53 (137)
T ss_pred HHHHHHHHHHHHHHHHHhhccc
Confidence 3444445555667777665443
No 325
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=27.48 E-value=65 Score=22.01 Aligned_cols=24 Identities=4% Similarity=-0.363 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Q psy2889 15 HSHGIRRTIKCCFTKKFIWPPLIK 38 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~~pi~~ 38 (163)
+|.+..++.++++...+.|+|=.+
T Consensus 62 ~~f~~~~~~~v~~~~~~~y~PD~~ 85 (105)
T PF10183_consen 62 PFFFGFSGSLVFGGVFLAYKPDTS 85 (105)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCC
Confidence 444444455555666667788333
No 326
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=27.39 E-value=1.6e+02 Score=18.36 Aligned_cols=20 Identities=10% Similarity=0.170 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhHHH
Q psy2889 16 SHGIRRTIKCCFTKKFIWPP 35 (163)
Q Consensus 16 ~~~i~Flil~~~l~~~l~~p 35 (163)
+..+.+..++....-+++-|
T Consensus 2 ~~g~l~Ga~~Ga~~glL~aP 21 (74)
T PF12732_consen 2 LLGFLAGAAAGAAAGLLFAP 21 (74)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 33445555555555555544
No 327
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=27.37 E-value=1.8e+02 Score=18.76 Aligned_cols=36 Identities=8% Similarity=-0.056 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 50 ILAAANSEKEKVSYDRKRIQKELIATHEENKNRINL 85 (163)
Q Consensus 50 ~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~ 85 (163)
.|+++-..-++.-.+.+.++..|.+|+.+...++.+
T Consensus 28 ~Leesl~lyeeG~~L~k~C~~~L~~ae~kv~~l~~~ 63 (76)
T PRK14068 28 SLEESLDLYQRGMKLSAACDTTLKNAEKKVNDLIKE 63 (76)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355666666777778888888888888777777654
No 328
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=27.16 E-value=70 Score=20.56 Aligned_cols=9 Identities=11% Similarity=-0.116 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q psy2889 16 SHGIRRTIK 24 (163)
Q Consensus 16 ~~~i~Flil 24 (163)
|.++..+++
T Consensus 7 ~elliIl~I 15 (73)
T PRK02958 7 WHWLIVLVI 15 (73)
T ss_pred HHHHHHHHH
Confidence 444443333
No 329
>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=27.13 E-value=5.2e+02 Score=24.16 Aligned_cols=66 Identities=15% Similarity=0.128 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 37 IKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKAT 102 (163)
Q Consensus 37 ~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~ 102 (163)
..-++.-........+..+....+++.+...+............++...|...+.....++..++.
T Consensus 510 i~~l~~~~~~~~~~~~~~e~~~~e~~~l~~~~s~~~~~l~e~~~~~~~~a~~~~~~~~~~a~~e~~ 575 (753)
T COG1193 510 IEKLEEVRKELEEELEEVEKLLDEVELLTGANSGGKTSLLELKAQIVVLAHMGLPVPAEEAKVEAV 575 (753)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333444444445555555555555555555555555555555555555555555444444443333
No 330
>PTZ00491 major vault protein; Provisional
Probab=26.94 E-value=5.6e+02 Score=24.38 Aligned_cols=24 Identities=13% Similarity=0.108 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 119 QINIARENLHNEIVNLAIKSAEKI 142 (163)
Q Consensus 119 e~~~a~~~l~~~i~~la~~~a~kl 142 (163)
.+....-+-.....+|.+.-+..+
T Consensus 759 ~~~~~e~~~~~~~~~le~~k~~~l 782 (850)
T PTZ00491 759 KRQELELEYEQAQNELEIAKAKEL 782 (850)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333333334444455555544444
No 331
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=26.82 E-value=71 Score=20.67 Aligned_cols=8 Identities=13% Similarity=-0.027 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q psy2889 16 SHGIRRTI 23 (163)
Q Consensus 16 ~~~i~Fli 23 (163)
|.++..++
T Consensus 7 ~ellIIlv 14 (75)
T PRK04561 7 WHWLVVLV 14 (75)
T ss_pred HHHHHHHH
Confidence 44443333
No 332
>PF14975 DUF4512: Domain of unknown function (DUF4512)
Probab=26.77 E-value=84 Score=20.99 Aligned_cols=20 Identities=20% Similarity=0.246 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhHHHHHHHHH
Q psy2889 22 TIKCCFTKKFIWPPLIKALD 41 (163)
Q Consensus 22 lil~~~l~~~l~~pi~~~l~ 41 (163)
=||+|+.+||+-|-|..++.
T Consensus 9 PvLLwIykkFlqP~i~~~~s 28 (88)
T PF14975_consen 9 PVLLWIYKKFLQPYIYPFWS 28 (88)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 35777778888877777776
No 333
>KOG2077|consensus
Probab=26.70 E-value=2.7e+02 Score=25.32 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 40 LDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTE 87 (163)
Q Consensus 40 l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~ 87 (163)
|.--+.-+++++..+...+.+.++...+.++.|..++.++..-+.++.
T Consensus 334 L~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~ 381 (832)
T KOG2077|consen 334 LTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAK 381 (832)
T ss_pred hccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334566778899999999999999999999999999988876555433
No 334
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=26.60 E-value=1e+02 Score=21.67 Aligned_cols=12 Identities=8% Similarity=-0.249 Sum_probs=6.2
Q ss_pred cccccccCchHH
Q psy2889 3 LIYAIQSADTGA 14 (163)
Q Consensus 3 ~~~~~l~~~~~~ 14 (163)
|+...++++.++
T Consensus 24 GiA~y~gi~~~~ 35 (118)
T PRK10697 24 GIAHYFDVPVKL 35 (118)
T ss_pred HHHHHHCCCHHH
Confidence 444455566554
No 335
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=26.50 E-value=1.6e+02 Score=18.02 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 39 ALDDRKKKIADILAAANSEKEKVSYDRKRI 68 (163)
Q Consensus 39 ~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~ 68 (163)
.+++|=......|..+++.-..++.....|
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~~~ 58 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARAKQA 58 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466776666666666665555554444433
No 336
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=26.47 E-value=95 Score=26.54 Aligned_cols=16 Identities=6% Similarity=0.173 Sum_probs=7.7
Q ss_pred HHHHHHhHHH--HHHHHH
Q psy2889 26 CFTKKFIWPP--LIKALD 41 (163)
Q Consensus 26 ~~l~~~l~~p--i~~~l~ 41 (163)
|++.+++.-| +.....
T Consensus 60 ~~l~~v~~~~~~~~~w~~ 77 (400)
T COG3071 60 WLLRRVLRTPAHTRGWFS 77 (400)
T ss_pred HHHHHHhcCcHHHHHHHH
Confidence 4455555555 444444
No 337
>PRK14145 heat shock protein GrpE; Provisional
Probab=26.26 E-value=3e+02 Score=21.11 Aligned_cols=9 Identities=0% Similarity=-0.234 Sum_probs=3.7
Q ss_pred hhcCHHHHH
Q psy2889 145 NKITIEVNS 153 (163)
Q Consensus 145 ~~i~~~~~~ 153 (163)
...||..|.
T Consensus 149 e~FDP~~HE 157 (196)
T PRK14145 149 QIFDPYKHH 157 (196)
T ss_pred CCCCchhhh
Confidence 344444443
No 338
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=26.25 E-value=77 Score=18.49 Aligned_cols=20 Identities=5% Similarity=-0.131 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHhHHH
Q psy2889 16 SHGIRRTIKCCFTKKFIWPP 35 (163)
Q Consensus 16 ~~~i~Flil~~~l~~~l~~p 35 (163)
|.++-|++++..+..+.|.|
T Consensus 14 ~~l~~~~~~Figiv~wa~~p 33 (48)
T cd01324 14 WGLLYLALFFLGVVVWAFRP 33 (48)
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 44433444444444444443
No 339
>PRK04387 hypothetical protein; Provisional
Probab=25.84 E-value=60 Score=21.76 Aligned_cols=24 Identities=13% Similarity=0.033 Sum_probs=16.5
Q ss_pred CccccccccCchHH--HHHHHHHHHHH
Q psy2889 1 MGLIYAIQSADTGA--HSHGIRRTIKC 25 (163)
Q Consensus 1 ~~~~~~~l~~~~~~--~~~~i~Flil~ 25 (163)
|+-.+|+ ++||+- +..+++|+=.+
T Consensus 1 ~~Y~YPl-d~dWsteEii~Vi~F~~~V 26 (90)
T PRK04387 1 MEYQYPL-DLDWSTEEMISVLHFFNAV 26 (90)
T ss_pred CCCCCCC-CCCCCHHHHHHHHHHHHHH
Confidence 4556675 888876 88888886443
No 340
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=25.79 E-value=2.3e+02 Score=19.67 Aligned_cols=26 Identities=8% Similarity=-0.219 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy2889 15 HSHGIRRTIKCCFTKKFIWPPLIKALDD 42 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~~pi~~~l~~ 42 (163)
+..+.|.+.. .+-.++++++.+.+..
T Consensus 22 ~~~lGN~l~v--p~i~~~~~~i~~~l~~ 47 (121)
T PF06695_consen 22 LAFLGNILPV--PFILLFLDKILKWLKR 47 (121)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 4444443333 2333556777777655
No 341
>KOG2668|consensus
Probab=25.79 E-value=4.2e+02 Score=22.57 Aligned_cols=41 Identities=20% Similarity=0.063 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 99 KKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSA 139 (163)
Q Consensus 99 ~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a 139 (163)
+.|+.+++++..++..-..........-|-.-+-.++-.++
T Consensus 329 A~akaeaeqm~~ka~v~~~y~~aa~l~~lLealp~Ia~~ia 369 (428)
T KOG2668|consen 329 ADAKAEAEQMAAKAEVYQAYAQAAYLRTLLEALPMIAAEIA 369 (428)
T ss_pred hhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc
Confidence 33444444554444444433333333333333333333333
No 342
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=25.74 E-value=1.3e+02 Score=17.09 Aligned_cols=10 Identities=0% Similarity=-0.127 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q psy2889 19 IRRTIKCCFT 28 (163)
Q Consensus 19 i~Flil~~~l 28 (163)
.+|.+.+.++
T Consensus 9 ~sYg~t~~~l 18 (46)
T PF04995_consen 9 SSYGVTALVL 18 (46)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 343
>PRK00442 tatA twin arginine translocase protein A; Provisional
Probab=25.67 E-value=2.2e+02 Score=19.20 Aligned_cols=7 Identities=29% Similarity=0.021 Sum_probs=2.8
Q ss_pred HHHHHHH
Q psy2889 16 SHGIRRT 22 (163)
Q Consensus 16 ~~~i~Fl 22 (163)
|.++..+
T Consensus 7 ~elliIl 13 (92)
T PRK00442 7 KHWIVIL 13 (92)
T ss_pred HHHHHHH
Confidence 4444333
No 344
>PF07466 DUF1517: Protein of unknown function (DUF1517); InterPro: IPR010903 This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=25.63 E-value=69 Score=26.09 Aligned_cols=10 Identities=10% Similarity=0.105 Sum_probs=5.0
Q ss_pred cccccCchHH
Q psy2889 5 YAIQSADTGA 14 (163)
Q Consensus 5 ~~~l~~~~~~ 14 (163)
+|++.|.+++
T Consensus 51 ~p~l~p~~G~ 60 (289)
T PF07466_consen 51 FPFLGPFFGF 60 (289)
T ss_pred cCcccccccc
Confidence 4555555544
No 345
>PRK01614 tatE twin arginine translocase protein A; Validated
Probab=25.60 E-value=2.1e+02 Score=18.98 Aligned_cols=23 Identities=13% Similarity=-0.116 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Q psy2889 16 SHGIRRTIKCCFTKKFIWPPLIKAL 40 (163)
Q Consensus 16 ~~~i~Flil~~~l~~~l~~pi~~~l 40 (163)
|.++..++++++| |..+.|-.+.
T Consensus 7 ~ELLIIlvIvLLL--FG~kKLPeLg 29 (85)
T PRK01614 7 TKLLVVGILIVLL--FGTSKLRTLG 29 (85)
T ss_pred HHHHHHHHHHHHH--hCcchHHHHH
Confidence 4444444433333 4444444443
No 346
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=25.23 E-value=1.3e+02 Score=19.41 Aligned_cols=52 Identities=10% Similarity=-0.036 Sum_probs=36.4
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 9 SADTGAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSY 63 (163)
Q Consensus 9 ~~~~~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~ 63 (163)
.|+-.+.|.+++++...| -+..-.+....+-|...-.++.+.|++....|..
T Consensus 14 ~p~~yl~~sI~s~l~Cc~---PlGi~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~ 65 (82)
T PF04505_consen 14 PPPDYLVLSIFSTLCCCW---PLGIVAIVYSSKVRSRYAAGDYEGARRASRKAKK 65 (82)
T ss_pred CCCCceeHHHHHHHHHHh---hHHHHHheechhhHHHHHCCCHHHHHHHHHHhHH
Confidence 355556777766663332 2555667778888999999999999887777654
No 347
>KOG4702|consensus
Probab=25.16 E-value=91 Score=19.95 Aligned_cols=13 Identities=8% Similarity=0.079 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q psy2889 61 VSYDRKRIQKELI 73 (163)
Q Consensus 61 a~~~~~e~e~~L~ 73 (163)
+.+-+++|+..|.
T Consensus 47 ~~~~~EE~~~~lR 59 (77)
T KOG4702|consen 47 ATKRKEEYENFLR 59 (77)
T ss_pred HHhhHHHHHHHHH
Confidence 3344455555544
No 348
>COG2770 ResE FOG: HAMP domain [Signal transduction mechanisms]
Probab=25.14 E-value=1.8e+02 Score=18.49 Aligned_cols=37 Identities=11% Similarity=-0.042 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy2889 15 HSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADIL 51 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l 51 (163)
.+.++.-.++.|++.+.+-+|+.+.-+-.++-..+++
T Consensus 13 ~~~~~~~~~~~~~~~~~v~~~l~~l~~~~~~~~~g~~ 49 (83)
T COG2770 13 LALVLILAVLLLAAARRVTRPLRRLADLAQNLALGDL 49 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCc
Confidence 3333334444477777777888777776665554443
No 349
>PRK10780 periplasmic chaperone; Provisional
Probab=25.03 E-value=2.8e+02 Score=20.23 Aligned_cols=81 Identities=6% Similarity=0.075 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 55 NSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNL 134 (163)
Q Consensus 55 ~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~l 134 (163)
.....+.+....+++....+-+.++..+-...+...+..+.....+.+............+-..........+..-+..+
T Consensus 53 ~~~q~el~~~~~elq~~~~~~q~~~~~ms~~~~~~~~~el~~~~~~~q~~~~~~qq~~~~~~~e~~~~i~~ki~~ai~~v 132 (165)
T PRK10780 53 KGRASELQRMETDLQAKMQKLQRDGSTMKGSDRTKLEKDVMAQRQTFSQKAQAFEQDRRRRSNEERNKILTRIQTAVKSV 132 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555444444443333333333333332222233333332222222233333334444444444444
Q ss_pred H
Q psy2889 135 A 135 (163)
Q Consensus 135 a 135 (163)
|
T Consensus 133 a 133 (165)
T PRK10780 133 A 133 (165)
T ss_pred H
Confidence 4
No 350
>PRK01770 sec-independent translocase; Provisional
Probab=24.94 E-value=3e+02 Score=20.67 Aligned_cols=10 Identities=20% Similarity=-0.154 Sum_probs=4.1
Q ss_pred HhHHHHHHHH
Q psy2889 31 FIWPPLIKAL 40 (163)
Q Consensus 31 ~l~~pi~~~l 40 (163)
|..+.|-.++
T Consensus 20 ~GPerLP~~~ 29 (171)
T PRK01770 20 LGPQRLPVAV 29 (171)
T ss_pred cCchHHHHHH
Confidence 3334444444
No 351
>PF08078 PsaX: PsaX family; InterPro: IPR012986 This family consists of the PsaX family of photosystem I (PSI) protein subunits. PSI is a large multi-subunit pigment protein complex embedded in the thylakoid membranes of green plants and cyanobacteria. PsaX is one of the 12 protein subunits found in PSI and these subunits are arranged as monomers or trimers within the membrane as shown by the structure of the trimeric complex from Synechococcus elongatus [].; PDB: 3PCQ_X 1JB0_X.
Probab=24.92 E-value=1.3e+02 Score=16.51 Aligned_cols=11 Identities=9% Similarity=-0.070 Sum_probs=5.7
Q ss_pred HHHHHHHHHHH
Q psy2889 15 HSHGIRRTIKC 25 (163)
Q Consensus 15 ~~~~i~Flil~ 25 (163)
+...|||++--
T Consensus 21 llLaINflVAa 31 (37)
T PF08078_consen 21 LLLAINFLVAA 31 (37)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44455665543
No 352
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=24.83 E-value=4e+02 Score=24.12 Aligned_cols=13 Identities=0% Similarity=0.030 Sum_probs=5.0
Q ss_pred HHHHHHHhHHHHH
Q psy2889 25 CCFTKKFIWPPLI 37 (163)
Q Consensus 25 ~~~l~~~l~~pi~ 37 (163)
++++.+++.+++.
T Consensus 306 ~~~~~~~~~~~~~ 318 (710)
T TIGR03796 306 NVLALQLVSRRRV 318 (710)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333344443
No 353
>PRK12800 fliF flagellar MS-ring protein; Reviewed
Probab=24.80 E-value=1.2e+02 Score=27.19 Aligned_cols=26 Identities=8% Similarity=-0.074 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy2889 15 HSHGIRRTIKCCFTKKFIWPPLIKAL 40 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~~pi~~~l 40 (163)
++..+..+++++++++++..|+.+-|
T Consensus 461 ~~~~~~~~l~~ll~~~~viRP~~~~~ 486 (574)
T PRK12800 461 GLRLLVGAVVVLALLFGVVRPTLRQL 486 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455556666777888888987765
No 354
>PRK10297 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC; Provisional
Probab=24.69 E-value=2.8e+02 Score=24.12 Aligned_cols=35 Identities=9% Similarity=0.109 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy2889 16 SHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADI 50 (163)
Q Consensus 16 ~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~ 50 (163)
|..+.+-++.+++.-++|-|..++.|+....++++
T Consensus 406 ~~~~ilq~v~lvi~~lIY~PFvK~~dk~~~~~~~~ 440 (452)
T PRK10297 406 VAALLVALFNLGIATLIYLPFVVVANKAQNAIDKE 440 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56666777777888889999999999988877543
No 355
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=24.63 E-value=58 Score=16.79 Aligned_cols=15 Identities=33% Similarity=0.581 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy2889 35 PLIKALDDRKKKIAD 49 (163)
Q Consensus 35 pi~~~l~~R~~~I~~ 49 (163)
.+..+|++|++.+.+
T Consensus 7 SLqRFLeKRK~R~~~ 21 (27)
T PF09425_consen 7 SLQRFLEKRKDRLAA 21 (27)
T ss_dssp HHHHHHHHH------
T ss_pred HHHHHHHHHHHhhcc
Confidence 578899999988754
No 356
>PRK14164 heat shock protein GrpE; Provisional
Probab=24.48 E-value=3.5e+02 Score=21.16 Aligned_cols=10 Identities=10% Similarity=0.292 Sum_probs=5.1
Q ss_pred hhhcCHHHHH
Q psy2889 144 NNKITIEVNS 153 (163)
Q Consensus 144 ~~~i~~~~~~ 153 (163)
|...||..|.
T Consensus 170 Ge~FDP~~HE 179 (218)
T PRK14164 170 GDAFDPEIHE 179 (218)
T ss_pred CCCCChhHhh
Confidence 4455555554
No 357
>PF05256 UPF0223: Uncharacterised protein family (UPF0223); InterPro: IPR007920 This family of proteins is functionally uncharacterised.; PDB: 2OY9_B.
Probab=24.30 E-value=53 Score=21.95 Aligned_cols=24 Identities=17% Similarity=0.080 Sum_probs=9.0
Q ss_pred CccccccccCchHH--HHHHHHHHHHH
Q psy2889 1 MGLIYAIQSADTGA--HSHGIRRTIKC 25 (163)
Q Consensus 1 ~~~~~~~l~~~~~~--~~~~i~Flil~ 25 (163)
|.-.+|+ +|||+. +..+++|+=.+
T Consensus 1 ~nY~YPl-d~dWsteEii~Vi~F~~~V 26 (88)
T PF05256_consen 1 MNYSYPL-DPDWSTEEIIDVINFFNAV 26 (88)
T ss_dssp -------------HHHHHHHHHHHHHH
T ss_pred CCCCCCC-CCCCCHHHHHHHHHHHHHH
Confidence 4445665 788876 88888887554
No 358
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=24.03 E-value=1.6e+02 Score=24.96 Aligned_cols=29 Identities=10% Similarity=0.175 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy2889 14 AHSHGIRRTIKCCFTKKFIWPPLIKALDD 42 (163)
Q Consensus 14 ~~~~~i~Flil~~~l~~~l~~pi~~~l~~ 42 (163)
++..++.|.++++++.+++.+|+.+.+++
T Consensus 188 ~~~~~~~f~~~~l~~g~~l~~~~~r~~~~ 216 (397)
T COG0475 188 LLLAILAFLALLLLLGRYLLPPLFRRVAK 216 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36667777777777789999999999886
No 359
>PRK14149 heat shock protein GrpE; Provisional
Probab=23.83 E-value=3.4e+02 Score=20.77 Aligned_cols=6 Identities=0% Similarity=0.036 Sum_probs=2.5
Q ss_pred cCHHHH
Q psy2889 147 ITIEVN 152 (163)
Q Consensus 147 i~~~~~ 152 (163)
.||..|
T Consensus 144 FDP~~H 149 (191)
T PRK14149 144 FDPNFH 149 (191)
T ss_pred CChHHh
Confidence 444444
No 360
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=23.81 E-value=3.4e+02 Score=20.82 Aligned_cols=53 Identities=9% Similarity=0.137 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 39 ALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCK 91 (163)
Q Consensus 39 ~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~ 91 (163)
+|+.=-..+.+++..++.....+-......+.++......+...-..|..-..
T Consensus 28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~ 80 (219)
T TIGR02977 28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALS 80 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666666666555555666666665555555555544433
No 361
>PHA00276 phage lambda Rz-like lysis protein
Probab=23.75 E-value=3e+02 Score=20.13 Aligned_cols=71 Identities=10% Similarity=0.029 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 19 IRRTIKCCFTKKFIWPPLI-KALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQ 89 (163)
Q Consensus 19 i~Flil~~~l~~~l~~pi~-~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~ 89 (163)
+.+.++|..=|.+.+..-. +.=+.=+..........+........+..+|.+.+..++.+.+.++..-+.-
T Consensus 11 ~~a~~~~~~gy~~g~~~~~~~w~~~~~~e~~~~~~a~~~~QqaVaal~~~yqkEladaK~~~DrLiadlRsG 82 (144)
T PHA00276 11 VLAAMLFGLGYHLGSDSANAKWKQEVQNEYVKKVEATADTQAAINAVSKEYQEDLAALEGSTDRVIADLRSD 82 (144)
T ss_pred HHHHHHHHhhhccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcC
Confidence 3444444444444432211 1112223333344455555677778888888888888888888887766543
No 362
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=23.63 E-value=5.1e+02 Score=22.80 Aligned_cols=26 Identities=4% Similarity=0.106 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 45 KKIADILAAANSEKEKVSYDRKRIQK 70 (163)
Q Consensus 45 ~~I~~~l~~A~~~~~ea~~~~~e~e~ 70 (163)
+.++.-....++.+.+.+.+..+.+.
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~ 84 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEA 84 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555544433
No 363
>COG4968 PilE Tfp pilus assembly protein PilE [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.51 E-value=3e+02 Score=20.02 Aligned_cols=50 Identities=10% Similarity=-0.066 Sum_probs=31.2
Q ss_pred HH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 13 GA-HSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRI 68 (163)
Q Consensus 13 ~~-~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~ 68 (163)
+| ++.++..++++.+|.-+.||...+++.+ ....+|+....+.....++|
T Consensus 7 GFTLIELmIvVaIv~ILa~IAyPSY~~yv~r------s~R~~a~A~L~~~a~~~Er~ 57 (139)
T COG4968 7 GFTLIELMIVVAIVGILALIAYPSYQNYVLR------SRRSAAKAALLENAQFMERY 57 (139)
T ss_pred CccHHHHHHHHHHHHHHHHHHhHhHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 44 6677777788888889999998887632 33344444444444444433
No 364
>PRK14147 heat shock protein GrpE; Provisional
Probab=23.32 E-value=3.2e+02 Score=20.39 Aligned_cols=11 Identities=9% Similarity=0.108 Sum_probs=6.2
Q ss_pred hhhcCHHHHHH
Q psy2889 144 NNKITIEVNSS 154 (163)
Q Consensus 144 ~~~i~~~~~~~ 154 (163)
|...||..|..
T Consensus 122 G~~FDP~~HeA 132 (172)
T PRK14147 122 GQPFNPEHHQA 132 (172)
T ss_pred CCCCChHHhce
Confidence 45566666543
No 365
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=23.16 E-value=47 Score=22.52 Aligned_cols=11 Identities=9% Similarity=0.023 Sum_probs=4.8
Q ss_pred HHHHHHHHHHh
Q psy2889 22 TIKCCFTKKFI 32 (163)
Q Consensus 22 lil~~~l~~~l 32 (163)
+++++++++|+
T Consensus 75 lVily~IyYFV 85 (101)
T PF06024_consen 75 LVILYAIYYFV 85 (101)
T ss_pred HHHHhhheEEE
Confidence 33344444544
No 366
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=23.14 E-value=1.7e+02 Score=17.10 Aligned_cols=32 Identities=16% Similarity=0.001 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 50 ILAAANSEKEKVSYDRKRIQKELIATHEENKN 81 (163)
Q Consensus 50 ~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ 81 (163)
.++++-..=+++..+.+..+..|..++.+...
T Consensus 21 sLdes~~lyeeg~~l~~~c~~~L~~~e~~i~~ 52 (53)
T PF02609_consen 21 SLDESLKLYEEGMELIKKCQERLEEAEQKIEE 52 (53)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566666667777777777777777666554
No 367
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.05 E-value=2.2e+02 Score=18.40 Aligned_cols=36 Identities=14% Similarity=0.072 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 50 ILAAANSEKEKVSYDRKRIQKELIATHEENKNRINL 85 (163)
Q Consensus 50 ~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~ 85 (163)
.|+++-..=+++..+.+.++..|..++.+...++..
T Consensus 32 ~Lees~~lyeeg~~L~k~C~~~L~~ae~ki~~l~~~ 67 (80)
T PRK00977 32 PLEESLAAFERGVALARQCQKKLQQAEQRVEKLLDE 67 (80)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355666666777777777788888777777766543
No 368
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=22.81 E-value=3.4e+02 Score=20.54 Aligned_cols=54 Identities=22% Similarity=0.322 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 35 PLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQ 89 (163)
Q Consensus 35 pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~ 89 (163)
|- .+|+.=-......+..++.....+-.....++.++..+..++...-..|..-
T Consensus 24 P~-~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~A 77 (221)
T PF04012_consen 24 PE-KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELA 77 (221)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 5566555666666666666666666666666666666666666555555443
No 369
>PF12459 DUF3687: D-Ala-teichoic acid biosynthesis protein; InterPro: IPR021008 Proteins in this family are bacterial proteins of approximately 50 amino acids in length. There are two completely conserved residues (L and Y) that may be functionally important. A number of entries are annotated as D-Ala-teichoic acid biosynthesis protein; however there is no direct evidence to support this annotation.
Probab=22.74 E-value=1.3e+02 Score=17.15 Aligned_cols=19 Identities=5% Similarity=-0.113 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q psy2889 15 HSHGIRRTIKCCFTKKFIW 33 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~ 33 (163)
..++.=|+|++.+++-+.|
T Consensus 12 ~~T~fYf~Ill~L~ylYgy 30 (42)
T PF12459_consen 12 GKTLFYFAILLALIYLYGY 30 (42)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 6677778888887776654
No 370
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=22.52 E-value=4.5e+02 Score=21.81 Aligned_cols=6 Identities=17% Similarity=0.041 Sum_probs=2.1
Q ss_pred HHHHHH
Q psy2889 78 ENKNRI 83 (163)
Q Consensus 78 ea~~ii 83 (163)
++..++
T Consensus 245 ~a~~~~ 250 (334)
T PRK11029 245 EAEKLR 250 (334)
T ss_pred HHHHHH
Confidence 333333
No 371
>PF04113 Gpi16: Gpi16 subunit, GPI transamidase component; InterPro: IPR007245 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex. Gpi16, Gpi8 and Gaa1 for a sub-complex of the GPI transamidase. GPI transamidase adds glycosylphosphatidylinositols (GPIs) to newly synthesized proteins. Gpi16 is an essential N-glycosylated transmembrane glycoprotein. Gpi16 is largely found on the lumenal side of the ER. It has a single C-terminal transmembrane domain and a small C-terminal, cytosolic extension with an ER retrieval motif [].; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=22.48 E-value=1.1e+02 Score=27.51 Aligned_cols=43 Identities=14% Similarity=0.109 Sum_probs=31.3
Q ss_pred cccccccCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2889 3 LIYAIQSADTGAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIA 48 (163)
Q Consensus 3 ~~~~~l~~~~~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~ 48 (163)
+..++-+||+.+.+++|.|.--++. ++|+++.+++-.|--...
T Consensus 499 lLv~LptPDFSMPyNVI~lt~Tv~A---l~FG~i~nlltrr~~~~~ 541 (564)
T PF04113_consen 499 LLVSLPTPDFSMPYNVIILTCTVMA---LAFGSIFNLLTRRFVTEE 541 (564)
T ss_pred ccccCCCCCCCccchhhHHHHHHHH---HHHHHHHHHHHHHhhhhh
Confidence 4556778999988888877766654 468899988886655443
No 372
>PRK01833 tatA twin arginine translocase protein A; Provisional
Probab=22.37 E-value=1e+02 Score=19.91 Aligned_cols=10 Identities=0% Similarity=-0.413 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q psy2889 16 SHGIRRTIKC 25 (163)
Q Consensus 16 ~~~i~Flil~ 25 (163)
|.++..++++
T Consensus 7 ~elliIl~i~ 16 (74)
T PRK01833 7 WQLLIIVAII 16 (74)
T ss_pred HHHHHHHHHH
Confidence 4444443333
No 373
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=22.29 E-value=4.3e+02 Score=23.45 Aligned_cols=25 Identities=12% Similarity=0.098 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q psy2889 18 GIRRTIKCCFTKKFIWPPLIKALDD 42 (163)
Q Consensus 18 ~i~Flil~~~l~~~l~~pi~~~l~~ 42 (163)
++.++++.|++++++.+|+..+-+.
T Consensus 158 ll~~~~l~~~l~~~i~~PL~~l~~~ 182 (660)
T PRK11829 158 LVLSVSIAWCINRLIIHPLRAMAKE 182 (660)
T ss_pred HHHHHHHHHHHHhhcCcHHHHHHHH
Confidence 3444444555666677887666543
No 374
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=22.29 E-value=4.6e+02 Score=21.85 Aligned_cols=19 Identities=5% Similarity=-0.489 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q psy2889 15 HSHGIRRTIKCCFTKKFIW 33 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~ 33 (163)
+|.++.++++++++.+++|
T Consensus 41 ~~~~~~~~~~~~~~~~~~~ 59 (409)
T TIGR00540 41 ITGLAIFFIIALAIIFAFE 59 (409)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444333333333
No 375
>KOG4304|consensus
Probab=22.26 E-value=2.3e+02 Score=22.55 Aligned_cols=59 Identities=14% Similarity=0.203 Sum_probs=35.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 29 KKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLII 94 (163)
Q Consensus 29 ~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~ 94 (163)
++-+.|||.. .+|+++|...|++-+..--++.....+-- ++-|-.+|++-+.....+..
T Consensus 31 ~rk~~Kpl~E--KkRRaRIN~~L~eLK~Li~e~~~~~~~~~-----sklEKAdILEltV~hL~~l~ 89 (250)
T KOG4304|consen 31 YRKVRKPLLE--KKRRARINRCLDELKDLIPEALKKDGQRH-----SKLEKADILELTVNHLRQLQ 89 (250)
T ss_pred HhhhcchhHH--HHHHHHHHHHHHHHHHHHHHHHhhcchhh-----hhhHHHHHHHHHHHHHHHHh
Confidence 4445566644 57889999999887777666655542222 33344455655555444433
No 376
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=22.14 E-value=3.9e+02 Score=20.92 Aligned_cols=42 Identities=19% Similarity=0.206 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 95 EKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAI 136 (163)
Q Consensus 95 ~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~ 136 (163)
+....+|.++-+++-+.++.++..-..+-..++++-++.++-
T Consensus 156 E~~~~~a~~~Fe~IS~~aK~El~rF~~~Rv~~Fkk~Lv~y~E 197 (218)
T cd07662 156 ETTQQLCCQKFEKISESAKQELIDFKTRRVAAFRKNLVELAE 197 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666777777777777777777777766665543
No 377
>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein. These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).
Probab=22.13 E-value=2e+02 Score=22.05 Aligned_cols=41 Identities=10% Similarity=-0.038 Sum_probs=22.1
Q ss_pred cccccccCc-h-HHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHH
Q psy2889 3 LIYAIQSAD-T-GAHSHGIRRTIKCCFTKKFI-----WPPLIKALDDR 43 (163)
Q Consensus 3 ~~~~~l~~~-~-~~~~~~i~Flil~~~l~~~l-----~~pi~~~l~~R 43 (163)
.+.|+..-. + ++...++.|++++.+.-... .|++.+.+++-
T Consensus 115 IYvPlFa~~s~~~l~v~livF~ilv~vwc~~a~~l~~~p~I~~~lery 162 (193)
T TIGR00779 115 IYVPYFVTLSMTNLLLTLIVFLIMVFFLCFTAYRLANFPGISETVEKY 162 (193)
T ss_pred EEeeeccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHh
Confidence 344554332 2 23666777777665433322 37777777653
No 378
>PTZ00250 variable surface protein Vir23; Provisional
Probab=21.98 E-value=1.5e+02 Score=24.91 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=12.3
Q ss_pred HHHHHHHHHhHHHHHHHHH
Q psy2889 23 IKCCFTKKFIWPPLIKALD 41 (163)
Q Consensus 23 il~~~l~~~l~~pi~~~l~ 41 (163)
+|..++.-|=|.|+++.|.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~ 306 (350)
T PTZ00250 288 FLAIFLILFKFTPFGKKLN 306 (350)
T ss_pred HHHHHHHHhccCchHHHHH
Confidence 3443444455789999887
No 379
>KOG2302|consensus
Probab=21.98 E-value=8e+02 Score=24.45 Aligned_cols=56 Identities=9% Similarity=0.042 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 15 HSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEE 78 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~e 78 (163)
.|+++-|+++++++..|+..-+..+.-+ .+-.- ...+++++....-|+.|.....+
T Consensus 1359 pwmllYfIsfllIvsffVlnmfVgvvve-------nfhKc-rqhqe~EeArRreEKrLrrlekk 1414 (1956)
T KOG2302|consen 1359 PWMLLYFISFLLIVSFFVLNMFVGVVVE-------NFHKC-RQHQEAEEARRREEKRLRRLEKK 1414 (1956)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999998888877632 22222 22344455555555555555443
No 380
>PRK04098 sec-independent translocase; Provisional
Probab=21.96 E-value=3.4e+02 Score=20.15 Aligned_cols=9 Identities=22% Similarity=-0.097 Sum_probs=3.5
Q ss_pred hHHHHHHHH
Q psy2889 32 IWPPLIKAL 40 (163)
Q Consensus 32 l~~pi~~~l 40 (163)
..+.+-.++
T Consensus 21 GP~KLP~~~ 29 (158)
T PRK04098 21 GPDKLPQAM 29 (158)
T ss_pred CchHHHHHH
Confidence 333344443
No 381
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=21.96 E-value=2.9e+02 Score=23.70 Aligned_cols=27 Identities=11% Similarity=-0.130 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy2889 15 HSHGIRRTIKCCFTKKFIWPPLIKALD 41 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~~pi~~~l~ 41 (163)
+++++.|+|+++++.+++..-+.+++.
T Consensus 41 l~~lv~~~ii~lvv~~~l~~~l~~v~~ 67 (400)
T COG3071 41 LTTLVIFLIIALVVLYLLEWLLRRVLR 67 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 677777777777777777777777764
No 382
>PRK12855 hypothetical protein; Provisional
Probab=21.70 E-value=1.9e+02 Score=19.84 Aligned_cols=16 Identities=6% Similarity=0.040 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy2889 65 RKRIQKELIATHEENK 80 (163)
Q Consensus 65 ~~e~e~~L~~a~~ea~ 80 (163)
...|++.|.++|.++-
T Consensus 47 ~~~Y~~~l~~aR~~A~ 62 (103)
T PRK12855 47 SGAYESKLKEARDIAM 62 (103)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4556666666666553
No 383
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.
Probab=21.53 E-value=2.1e+02 Score=22.88 Aligned_cols=24 Identities=4% Similarity=-0.370 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Q psy2889 15 HSHGIRRTIKCCFTKKFIWPPLIK 38 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~~pi~~ 38 (163)
.|.++-++.++|.+.|+++=|...
T Consensus 29 ww~~~f~~~i~~~~~y~~~yp~~~ 52 (285)
T TIGR00782 29 WWLWTFYATIVWGFGYLVAYPAWP 52 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccC
Confidence 455555555556555555545444
No 384
>PF14821 Thr_synth_N: Threonine synthase N terminus; PDB: 3V7N_A 1VB3_A 1KL7_A.
Probab=21.51 E-value=1.4e+02 Score=19.16 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhhcCHHHHHHHHHHH
Q psy2889 131 IVNLAIKSAEKILNNKITIEVNSSLLNQL 159 (163)
Q Consensus 131 i~~la~~~a~kll~~~i~~~~~~~li~~~ 159 (163)
-.++|..+.+..++..+++++-..+|++.
T Consensus 50 y~elA~~il~~f~~~di~~~~L~~ii~~A 78 (79)
T PF14821_consen 50 YAELAFEILSPFLGDDIPEEELKEIIEKA 78 (79)
T ss_dssp HHHHHHHHHHHHCCCCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 46888999999998999999888888763
No 385
>PHA03255 BDLF3; Provisional
Probab=21.24 E-value=96 Score=23.47 Aligned_cols=17 Identities=6% Similarity=-0.253 Sum_probs=8.4
Q ss_pred chHHHHHHHHHHHHHHH
Q psy2889 11 DTGAHSHGIRRTIKCCF 27 (163)
Q Consensus 11 ~~~~~~~~i~Flil~~~ 27 (163)
-|++++..+.|+.|+++
T Consensus 184 lwtlvfvgltflmlili 200 (234)
T PHA03255 184 LWTLVFVGLTFLMLILI 200 (234)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555554443
No 386
>PRK12856 hypothetical protein; Provisional
Probab=21.20 E-value=2e+02 Score=19.70 Aligned_cols=16 Identities=6% Similarity=0.040 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy2889 65 RKRIQKELIATHEENK 80 (163)
Q Consensus 65 ~~e~e~~L~~a~~ea~ 80 (163)
...|++.|.++|.++-
T Consensus 47 ~~~Y~~~l~~aR~~A~ 62 (103)
T PRK12856 47 AGSYESKLKEARDIAM 62 (103)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3466666666666653
No 387
>PRK03449 putative inner membrane protein translocase component YidC; Provisional
Probab=21.00 E-value=4.7e+02 Score=21.45 Aligned_cols=14 Identities=7% Similarity=0.598 Sum_probs=6.5
Q ss_pred HHHHHhHHHHHHHH
Q psy2889 27 FTKKFIWPPLIKAL 40 (163)
Q Consensus 27 ~l~~~l~~pi~~~l 40 (163)
+++-.++|+..+..
T Consensus 42 ivR~~l~Pl~i~q~ 55 (304)
T PRK03449 42 TLRALLYKPFVRQI 55 (304)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444455554433
No 388
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=20.98 E-value=94 Score=25.77 Aligned_cols=20 Identities=5% Similarity=-0.235 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q psy2889 14 AHSHGIRRTIKCCFTKKFIW 33 (163)
Q Consensus 14 ~~~~~i~Flil~~~l~~~l~ 33 (163)
.++.+|.++||.|++++++.
T Consensus 158 ~lf~ii~l~vla~ivY~~~~ 177 (318)
T PF06682_consen 158 WLFWIIFLLVLAFIVYSLFL 177 (318)
T ss_pred hhhhHHHHHHHHHHHHHHHh
Confidence 44555555666666666543
No 389
>PF08390 TRAM1: TRAM1-like protein; InterPro: IPR013599 This family comprises sequences that are similar to human TRAM1 (Q15629 from SWISSPROT). This is a transmembrane protein of the endoplasmic reticulum, thought to be involved in the membrane transfer of secretory proteins []. The region featured in this family is found N-terminal to the longevity-assurance protein region (IPR005547 from INTERPRO).
Probab=20.89 E-value=2.2e+02 Score=17.52 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy2889 15 HSHGIRRTIKCCFTKKFIWPPLIKAL 40 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~~pi~~~l 40 (163)
++-++.|.++=.++..+++.|+.+.+
T Consensus 33 ~fy~i~~t~lRa~~m~yvl~Plar~~ 58 (65)
T PF08390_consen 33 FFYIIVFTFLRAFLMEYVLDPLARKL 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44445555555677778888887643
No 390
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=20.88 E-value=5.3e+02 Score=22.02 Aligned_cols=15 Identities=13% Similarity=-0.131 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy2889 14 AHSHGIRRTIKCCFT 28 (163)
Q Consensus 14 ~~~~~i~Flil~~~l 28 (163)
++.+++.|++|+|..
T Consensus 19 v~LHvlLi~lLi~gs 33 (387)
T PRK09510 19 VVLHIILFALLIWSS 33 (387)
T ss_pred HHHHHHHHHHHHHHh
Confidence 366666666666543
No 391
>PF13664 DUF4149: Domain of unknown function (DUF4149)
Probab=20.84 E-value=2.3e+02 Score=18.42 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=9.7
Q ss_pred HHHHhHHHHHHHHHHHH
Q psy2889 28 TKKFIWPPLIKALDDRK 44 (163)
Q Consensus 28 l~~~l~~pi~~~l~~R~ 44 (163)
-..++.|++.+..++|+
T Consensus 84 ~~~~l~P~~~~l~~~~~ 100 (101)
T PF13664_consen 84 NAFYLGPKMNALKDQRE 100 (101)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 33444566777766664
No 392
>PF10841 DUF2644: Protein of unknown function (DUF2644); InterPro: IPR020300 This entry is represented by Bacteriophage PY100, Orf49. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains membrane proteins with no known function.
Probab=20.79 E-value=1.3e+02 Score=18.56 Aligned_cols=23 Identities=9% Similarity=-0.018 Sum_probs=16.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHhH
Q psy2889 11 DTGAHSHGIRRTIKCCFTKKFIW 33 (163)
Q Consensus 11 ~~~~~~~~i~Flil~~~l~~~l~ 33 (163)
+.|-+.|++.|+++..+|-+-+|
T Consensus 12 STT~~iQffg~lv~agil~~~vy 34 (60)
T PF10841_consen 12 STTAFIQFFGALVMAGILIYCVY 34 (60)
T ss_pred ehHHHHHHHHHHHHHHHHHhhee
Confidence 34458888888888877766554
No 393
>PHA03030 hypothetical protein; Provisional
Probab=20.68 E-value=99 Score=21.31 Aligned_cols=13 Identities=8% Similarity=-0.310 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q psy2889 18 GIRRTIKCCFTKK 30 (163)
Q Consensus 18 ~i~Flil~~~l~~ 30 (163)
++.|+++++++++
T Consensus 7 ili~lfifl~iff 19 (122)
T PHA03030 7 ILIFLFIFLFIFF 19 (122)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 394
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=20.65 E-value=1.5e+02 Score=20.06 Aligned_cols=9 Identities=11% Similarity=-0.355 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy2889 20 RRTIKCCFT 28 (163)
Q Consensus 20 ~Flil~~~l 28 (163)
.|.|+++++
T Consensus 57 ~f~i~f~~~ 65 (103)
T PF06422_consen 57 AFWIFFIVL 65 (103)
T ss_pred HHHHHHHHH
Confidence 333333333
No 395
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=20.38 E-value=2.3e+02 Score=17.62 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 51 LAAANSEKEKVSYDRKRIQKELIATHEENKNRIN 84 (163)
Q Consensus 51 l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~ 84 (163)
|+++-..=++.-.+.+..+..|..|+.+...+..
T Consensus 24 Leesl~lyeeG~~L~k~c~~~L~~ae~kv~~l~~ 57 (67)
T TIGR01280 24 LEEALNLFERGMALARRCEKKLAQAEQRVRKLLK 57 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666777777777777777777666654
No 396
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=20.26 E-value=65 Score=27.22 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHhH
Q psy2889 11 DTGAHSHGIRRTIKCCFTKKFIW 33 (163)
Q Consensus 11 ~~~~~~~~i~Flil~~~l~~~l~ 33 (163)
..+++.-++.|++++++|..|+|
T Consensus 84 Rk~~~~G~~~f~~ll~~lS~fIW 106 (382)
T TIGR02876 84 RPGILIGILLFLAIVYFLSNFIW 106 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhheEE
Confidence 45678888999999999999999
No 397
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=20.21 E-value=1.5e+02 Score=19.15 Aligned_cols=21 Identities=10% Similarity=-0.292 Sum_probs=13.9
Q ss_pred cccCchHH--HHHHHHHHHHHHH
Q psy2889 7 IQSADTGA--HSHGIRRTIKCCF 27 (163)
Q Consensus 7 ~l~~~~~~--~~~~i~Flil~~~ 27 (163)
.++|.+.+ .|-++.++++++.
T Consensus 38 IIHP~S~fR~~WD~~m~~~~~~~ 60 (77)
T PF08412_consen 38 IIHPFSKFRFYWDLIMLILLLYN 60 (77)
T ss_pred EEcCCccHHHHHHHHHHHHHHHH
Confidence 57888877 7776665555543
No 398
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=20.14 E-value=1.9e+02 Score=21.35 Aligned_cols=22 Identities=0% Similarity=-0.259 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q psy2889 15 HSHGIRRTIKCCFTKKFIWPPL 36 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~~pi 36 (163)
+.+++..+.|+|++++.+++-+
T Consensus 20 ~lT~~aW~gfi~l~~~~~~~~~ 41 (153)
T PRK14584 20 ILTALAWFGFLFLLVRGLLEMI 41 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 6667777777777777766443
No 399
>PHA02690 hypothetical protein; Provisional
Probab=20.10 E-value=1.1e+02 Score=20.02 Aligned_cols=33 Identities=6% Similarity=-0.042 Sum_probs=17.3
Q ss_pred cccccccCchHH-HHHHHHHHHHHHHHHHHhHHH
Q psy2889 3 LIYAIQSADTGA-HSHGIRRTIKCCFTKKFIWPP 35 (163)
Q Consensus 3 ~~~~~l~~~~~~-~~~~i~Flil~~~l~~~l~~p 35 (163)
+..|++.--+-+ |=.....+++++++.+..|..
T Consensus 33 gs~plLR~~~RlLfDL~lTvfV~myiv~Rl~~RN 66 (90)
T PHA02690 33 GSTPLLRQMWRLLFDLLLTVFVVMYIVFRLIWRN 66 (90)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 444555444444 334444555566666666643
No 400
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=20.09 E-value=1.9e+02 Score=16.48 Aligned_cols=9 Identities=22% Similarity=0.427 Sum_probs=4.8
Q ss_pred ccccCchHH
Q psy2889 6 AIQSADTGA 14 (163)
Q Consensus 6 ~~l~~~~~~ 14 (163)
++.+-+.++
T Consensus 5 ~LF~s~vGL 13 (42)
T PF11346_consen 5 DLFGSDVGL 13 (42)
T ss_pred HHhcChHHH
Confidence 344555665
No 401
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=20.06 E-value=2.6e+02 Score=18.16 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 34 PPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELI 73 (163)
Q Consensus 34 ~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~ 73 (163)
+.+...|+++.+.+...++.-+...........+++..|.
T Consensus 61 ~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 61 EEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888777777777777666654
No 402
>KOG1029|consensus
Probab=20.01 E-value=7.7e+02 Score=23.54 Aligned_cols=10 Identities=30% Similarity=0.405 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q psy2889 40 LDDRKKKIAD 49 (163)
Q Consensus 40 l~~R~~~I~~ 49 (163)
=|+|++....
T Consensus 315 EDKrkeNy~k 324 (1118)
T KOG1029|consen 315 EDKRKENYEK 324 (1118)
T ss_pred hhhhHHhHhh
Confidence 3444444433
No 403
>PHA03047 IMV membrane receptor-like protein; Provisional
Probab=20.01 E-value=1.4e+02 Score=17.86 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHhHH
Q psy2889 16 SHGIRRTIKCCFTKKFIWP 34 (163)
Q Consensus 16 ~~~i~Flil~~~l~~~l~~ 34 (163)
...+...+++|+++.|++.
T Consensus 33 iF~iqsi~FmWFifHFvhS 51 (53)
T PHA03047 33 IFFIQSILFMWFIFHFVHS 51 (53)
T ss_pred eeHHHHHHHHHHHHHHHHh
Confidence 3346667778888888764
Done!