Query psy2889
Match_columns 163
No_of_seqs 204 out of 1026
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 20:11:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2889.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2889hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b9u_A Protein (ATP synthase); 99.1 1E-10 3.5E-15 64.1 4.1 33 9-41 2-34 (34)
2 1l2p_A ATP synthase B chain; a 98.8 4.5E-08 1.5E-12 60.3 9.7 59 70-128 2-60 (61)
3 2dm9_A V-type ATP synthase sub 98.4 2E-07 6.7E-12 69.5 4.2 99 63-162 14-112 (198)
4 2khk_A ATP synthase subunit B; 98.3 1.3E-08 4.3E-13 61.0 -3.4 50 38-87 2-51 (53)
5 3v6i_A V-type ATP synthase sub 98.1 0.00016 5.4E-09 53.7 15.0 99 62-160 9-107 (187)
6 2cly_A ATP synthase B chain, m 98.1 0.00019 6.4E-09 54.6 14.9 152 3-163 41-201 (214)
7 3v6i_B V-type ATP synthase, su 97.2 0.022 7.5E-07 37.9 16.0 97 36-142 7-103 (105)
8 3v6i_A V-type ATP synthase sub 97.1 0.015 5.1E-07 42.9 12.6 49 74-122 10-58 (187)
9 4efa_E V-type proton ATPase su 97.1 0.061 2.1E-06 41.0 16.6 91 70-160 23-125 (233)
10 1l2p_A ATP synthase B chain; a 96.9 0.023 7.8E-07 34.2 10.0 56 61-116 4-59 (61)
11 2dm9_A V-type ATP synthase sub 96.1 0.0011 3.9E-08 48.8 0.3 64 70-133 10-73 (198)
12 4efa_G V-type proton ATPase su 96.0 0.18 6.1E-06 34.7 11.3 38 116-153 77-116 (119)
13 2kk7_A V-type ATP synthase sub 95.5 0.052 1.8E-06 31.8 6.0 32 71-102 15-46 (52)
14 3v6i_B V-type ATP synthase, su 93.9 0.85 2.9E-05 30.2 16.6 69 60-132 10-78 (105)
15 2kk7_A V-type ATP synthase sub 93.9 0.39 1.3E-05 28.0 6.9 26 92-117 21-46 (52)
16 2k6i_A Uncharacterized protein 93.4 0.11 3.9E-06 30.8 3.9 31 72-102 21-51 (56)
17 2oar_A Large-conductance mecha 90.7 0.31 1.1E-05 35.6 4.4 32 9-40 89-121 (174)
18 4efa_E V-type proton ATPase su 89.3 5.5 0.00019 29.9 15.7 18 86-103 54-71 (233)
19 4efa_G V-type proton ATPase su 88.6 4.3 0.00015 27.7 10.0 46 71-116 14-59 (119)
20 2o6n_A RH4B designed peptide; 88.1 1.6 5.6E-05 22.3 5.2 29 99-127 5-33 (35)
21 2k6i_A Uncharacterized protein 87.9 1.2 4E-05 26.4 4.6 29 65-93 25-53 (56)
22 3ghg_A Fibrinogen alpha chain; 77.3 33 0.0011 29.2 12.7 19 124-142 140-158 (562)
23 3vkg_A Dynein heavy chain, cyt 74.9 85 0.0029 32.7 16.6 54 33-86 1908-1964(3245)
24 2rdd_B UPF0092 membrane protei 72.0 5.1 0.00018 21.3 3.4 26 19-44 7-32 (37)
25 3hzq_A Large-conductance mecha 68.4 6.8 0.00023 26.5 4.1 28 10-38 81-109 (114)
26 2l8s_A Integrin alpha-1; trans 60.3 20 0.0007 20.8 4.5 26 9-34 7-32 (54)
27 2zuo_A MVP, major vault protei 59.2 1E+02 0.0035 27.8 17.0 20 123-142 768-787 (861)
28 1ge9_A Ribosome recycling fact 58.1 51 0.0017 24.0 9.1 74 34-113 105-178 (184)
29 2k9j_B Integrin beta-3; transm 58.0 21 0.00073 19.6 4.3 30 15-44 13-42 (43)
30 2knc_B Integrin beta-3; transm 57.1 32 0.0011 21.5 5.5 30 15-44 14-43 (79)
31 1u2m_A Histone-like protein HL 54.1 9.6 0.00033 26.1 2.9 42 100-141 71-112 (143)
32 1use_A VAsp, vasodilator-stimu 52.7 28 0.00097 19.4 4.8 24 81-104 15-38 (45)
33 4gfq_A Ribosome-recycling fact 42.2 1E+02 0.0035 22.8 10.3 31 43-73 134-164 (209)
34 1dd5_A Ribosome recycling fact 40.6 1E+02 0.0035 22.3 10.3 33 41-73 108-140 (185)
35 1ise_A Ribosome recycling fact 40.4 1E+02 0.0035 22.3 10.1 33 41-73 108-140 (185)
36 1wqg_A Ribosome recycling fact 39.7 1.1E+02 0.0036 22.2 9.7 33 41-73 108-140 (185)
37 1is1_A Ribosome recycling fact 39.6 1.1E+02 0.0036 22.2 9.7 32 42-73 109-140 (185)
38 1eh1_A Ribosome recycling fact 39.5 1.1E+02 0.0037 22.2 10.4 32 42-73 110-141 (185)
39 4e17_B Catenin alpha-1; four h 39.5 46 0.0016 18.0 3.7 27 41-70 11-37 (40)
40 3ghg_A Fibrinogen alpha chain; 38.3 1.9E+02 0.0064 24.7 12.7 33 103-136 113-145 (562)
41 2wwb_C SEC61BETA, protein tran 34.1 13 0.00045 24.3 0.9 26 6-31 64-90 (96)
42 1rh5_C Secbeta; protein transl 33.7 38 0.0013 19.5 2.8 27 6-32 24-51 (53)
43 3ogk_Q JAZ1 incomplete degron 33.3 26 0.00089 16.5 1.6 15 35-49 4-18 (22)
44 2knc_A Integrin alpha-IIB; tra 33.2 59 0.002 18.8 3.6 20 15-34 16-35 (54)
45 2f95_B Sensory rhodopsin II tr 31.4 19 0.00066 24.2 1.5 14 27-40 78-91 (163)
46 4b9q_A Chaperone protein DNAK; 30.7 2.5E+02 0.0084 23.8 10.0 19 72-90 532-550 (605)
47 3lvg_D LCB, clathrin light cha 30.3 1.1E+02 0.0039 22.0 5.3 50 71-120 86-135 (190)
48 3k29_A Putative uncharacterize 30.0 1.5E+02 0.0052 21.2 14.0 49 34-82 77-125 (169)
49 2ww9_C Protein transport prote 29.6 35 0.0012 21.8 2.3 26 6-31 55-81 (87)
50 1cii_A Colicin IA; bacteriocin 28.1 2.7E+02 0.0093 23.5 15.2 33 127-159 445-478 (602)
51 1q90_N Cytochrome B6F complex 28.0 38 0.0013 17.2 1.8 25 3-27 1-25 (31)
52 4e18_B Catenin alpha-1; four h 27.2 85 0.0029 18.5 3.5 27 41-70 30-56 (59)
53 2zqm_A Prefoldin beta subunit 26.6 1.3E+02 0.0044 19.3 7.4 41 34-74 69-109 (117)
54 1fxk_A Prefoldin; archaeal pro 26.5 1.3E+02 0.0043 19.0 6.2 39 34-72 64-102 (107)
55 3lvh_D LCB, clathrin light cha 26.3 1.4E+02 0.0047 22.1 5.3 51 71-121 101-151 (205)
56 1jb0_X Photosystem I subunit P 25.9 76 0.0026 16.4 2.8 15 12-26 15-29 (35)
57 3ogl_Q JAZ1 incomplete degron 25.3 26 0.0009 16.3 0.9 13 34-46 8-20 (21)
58 1xi4_J LCA, clathrin light cha 25.3 1.2E+02 0.0041 18.4 9.2 54 71-124 10-63 (70)
59 2lhr_A Iron-regulated surface 24.0 1.2E+02 0.0039 18.5 3.8 25 62-86 41-65 (78)
60 2eqb_B RAB guanine nucleotide 23.1 1.6E+02 0.0054 19.1 14.0 30 85-114 47-76 (97)
61 3s8f_C Cytochrome C oxidase po 22.6 93 0.0032 16.2 3.8 19 15-33 12-30 (34)
62 2k1a_A Integrin alpha-IIB; sin 22.5 1E+02 0.0036 16.7 3.6 20 15-34 14-33 (42)
63 3gp4_A Transcriptional regulat 22.4 1.9E+02 0.0064 19.6 7.9 35 38-72 84-118 (142)
64 3lay_A Zinc resistance-associa 21.6 2.3E+02 0.0077 20.2 8.1 28 51-78 66-93 (175)
65 2dfs_A Myosin-5A; myosin-V, in 21.5 4.8E+02 0.017 24.1 15.5 11 66-76 987-997 (1080)
66 2kho_A Heat shock protein 70; 21.3 3.4E+02 0.012 22.9 7.8 17 72-88 532-548 (605)
67 3lhp_S 4E10_D0_1ISEA_004_N (T9 20.8 2E+02 0.0069 19.4 7.2 22 90-111 94-115 (123)
68 2p32_A Heat shock 70 kDa prote 20.5 1.8E+02 0.0063 18.8 6.2 12 61-72 23-34 (120)
69 2oy9_A UPF0223 protein BH2638; 20.4 47 0.0016 21.7 1.6 23 3-26 5-29 (98)
No 1
>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1
Probab=99.09 E-value=1e-10 Score=64.13 Aligned_cols=33 Identities=24% Similarity=0.595 Sum_probs=30.5
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy2889 9 SADTGAHSHGIRRTIKCCFTKKFIWPPLIKALD 41 (163)
Q Consensus 9 ~~~~~~~~~~i~Flil~~~l~~~l~~pi~~~l~ 41 (163)
++|++++|+++||++++++++||+|||+.++++
T Consensus 2 ~~~~~l~~~~i~Flil~~~l~kf~~~Pi~~~l~ 34 (34)
T 1b9u_A 2 NLNATILGQAIAFVLFVLFCMKYVWPPLMAAIE 34 (34)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 467889999999999999999999999999874
No 2
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=98.83 E-value=4.5e-08 Score=60.34 Aligned_cols=59 Identities=27% Similarity=0.334 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 70 KELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLH 128 (163)
Q Consensus 70 ~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~ 128 (163)
..|.+|+.++..|+.+|+.++..++++++.+|+.++++++..|+.+|+.++..++.+|+
T Consensus 2 ~~L~~Ar~ea~~Ii~~A~~~a~~~~~e~~~~A~~ea~~i~~~A~~eie~ek~~A~~~Lr 60 (61)
T 1l2p_A 2 DQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREELR 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 47899999999999999999999999999999999999999999999999999999986
No 3
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=98.40 E-value=2e-07 Score=69.52 Aligned_cols=99 Identities=11% Similarity=0.124 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 63 YDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKI 142 (163)
Q Consensus 63 ~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kl 142 (163)
+...+.+..+.+|+.++++|+.+|+.+++...+.+..+++.+++.....+...+..+.......++.++.+.++..+.++
T Consensus 14 ~A~~~a~~il~eA~~~a~~i~~~a~~e~~~~~~~~~~~a~~e~~~~~~~~~s~~~~~~r~~~l~~~~ev~~~~~~~a~~~ 93 (198)
T 2dm9_A 14 EAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRIIANARLEVRRKRLAIQEEIISSVLEEVKRR 93 (198)
T ss_dssp -------------------------------------------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777777777777777777777777777777777777777777777777777889999999999999999
Q ss_pred HhhhcCHHHHHHHHHHHHhh
Q psy2889 143 LNNKITIEVNSSLLNQLKIE 162 (163)
Q Consensus 143 l~~~i~~~~~~~li~~~i~~ 162 (163)
|++ ++++.+..++..++.+
T Consensus 94 l~~-l~~~~y~~~l~~li~e 112 (198)
T 2dm9_A 94 LET-MSEDEYFESVKALLKE 112 (198)
T ss_dssp HHH-CCHHHHHHHHHHHHHH
T ss_pred HHh-cCHHHHHHHHHHHHHH
Confidence 999 8877788888877754
No 4
>2khk_A ATP synthase subunit B; F1FO ATP synthase, spectroscopy, ATP synthesis, inner membrane, cell membrane, CF(0), hydrogen ION transpor transport; NMR {Escherichia coli}
Probab=98.32 E-value=1.3e-08 Score=61.04 Aligned_cols=50 Identities=24% Similarity=0.343 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 38 KALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTE 87 (163)
Q Consensus 38 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~ 87 (163)
++|++|++.|.++|+.|+..+.+++.++.+|+..|.+|+.++..|+.+|+
T Consensus 2 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~e~~l~~Ar~ea~~ii~~A~ 51 (53)
T 2khk_A 2 AAIEKRQKEIADGLASAERAHKDLDLAKASATDQLKKAKAEAQVIIEQAN 51 (53)
T ss_dssp CCSSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999999999999999999998887654
No 5
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=98.14 E-value=0.00016 Score=53.74 Aligned_cols=99 Identities=12% Similarity=0.088 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 62 SYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEK 141 (163)
Q Consensus 62 ~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~k 141 (163)
++..++.+..+.+|+.++..|+++|+.+|+.+.+.+..++..++....+........+.....-..+.++.+-...-+.+
T Consensus 9 ~eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~eli~~v~~~a~~ 88 (187)
T 3v6i_A 9 QEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEVLEEVRRRVRE 88 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778889999999999999999999999999999999999888777777777777777777777777777777777
Q ss_pred HHhhhcCHHHHHHHHHHHH
Q psy2889 142 ILNNKITIEVNSSLLNQLK 160 (163)
Q Consensus 142 ll~~~i~~~~~~~li~~~i 160 (163)
-|..-.++.....++...|
T Consensus 89 ~L~~~~~~~~Y~~~L~~Li 107 (187)
T 3v6i_A 89 ALEALPQKPEWPEVVRKLA 107 (187)
T ss_dssp HHHHGGGSTTHHHHHHHHH
T ss_pred HHHhhhCCccHHHHHHHHH
Confidence 7776543323444544444
No 6
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=98.10 E-value=0.00019 Score=54.64 Aligned_cols=152 Identities=11% Similarity=0.008 Sum_probs=50.5
Q ss_pred cccccccCchHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 3 LIYAIQSADTGA----HSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEE 78 (163)
Q Consensus 3 ~~~~~l~~~~~~----~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~e 78 (163)
+...+++-.+.+ ++.+++|+++++++.|++.||+.+++|++-++|.+.+++++...-++-+..-+..+.+.. ..+
T Consensus 41 L~~yliSKEiyVvneEt~~~~~~~~~~~~~~K~~Gp~~a~~~D~~~~~i~~~ln~~r~~~i~~lk~~Ie~~k~~q~-~~~ 119 (214)
T 2cly_A 41 LILYLLSKEIYVITPETFSAISTIGFLVYIVKKYGASVGEFADKLNEQKIAQLEEVKQASIKQIQDAIDMEKSQQA-LVQ 119 (214)
T ss_dssp --------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTG
T ss_pred HHHHHHcCceEEEechHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 333445545444 578899999999999999999999999999999999999987555544333333333332 233
Q ss_pred HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHH
Q psy2889 79 NKNRIN-----LTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNS 153 (163)
Q Consensus 79 a~~ii~-----~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~ 153 (163)
....+- .+.-+++..+.+-+-....|+.+.++...+-=...++...+ .++-.+..++. +++++...+
T Consensus 120 ~~~~Lf~~~kEn~al~lEa~yre~~~~v~~EvK~rLDy~v~~e~~~r~~eQ~-------~mv~wV~~~V~-k~it~~~ek 191 (214)
T 2cly_A 120 KRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRLDYHISVQNMMRQKEQE-------HMINWVEKRVV-QSISAQQEK 191 (214)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHT-C--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-HhcCcHHHH
Confidence 333332 22333333333444444445555544443333333332222 34444445544 344766666
Q ss_pred HHHHHHHhhC
Q psy2889 154 SLLNQLKIEL 163 (163)
Q Consensus 154 ~li~~~i~~l 163 (163)
..+++-|.+|
T Consensus 192 ~~L~~cIadl 201 (214)
T 2cly_A 192 ETIAKCIADL 201 (214)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 7777777654
No 7
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=97.18 E-value=0.022 Score=37.88 Aligned_cols=97 Identities=16% Similarity=0.251 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 36 LIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVE 115 (163)
Q Consensus 36 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~ 115 (163)
+.+-|.+|.......++ ....+.+..+..|+.++..|+.+|...+...-.+-......+..++...++..
T Consensus 7 llk~LAerE~~L~~~lE----------~Ar~eA~~~v~~AEAeA~ril~eAe~~a~~l~ae~r~~~~~Et~ri~~eara~ 76 (105)
T 3v6i_B 7 LIKSLAEKEKQLLERLE----------AAKKEAEERVKRAEAEAKALLEEAEAKAKALEAQYRERERAETEALLARYRER 76 (105)
T ss_dssp HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666555444 44556667788888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 116 IIKQINIARENLHNEIVNLAIKSAEKI 142 (163)
Q Consensus 116 i~~e~~~a~~~l~~~i~~la~~~a~kl 142 (163)
.+.+-.....--...+..-+-.+...+
T Consensus 77 Aeaea~~v~~~A~~r~~~Av~~vLkeV 103 (105)
T 3v6i_B 77 AEAEAKAVREKAMARLDEAVALVLKEV 103 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 877777776666555554444444333
No 8
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=97.09 E-value=0.015 Score=42.88 Aligned_cols=49 Identities=8% Similarity=0.037 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 74 ATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINI 122 (163)
Q Consensus 74 ~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~ 122 (163)
+|+.+++.|+.+|+.+++.+.+++.++|....+.....+..+....+++
T Consensus 10 eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r 58 (187)
T 3v6i_A 10 EVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRR 58 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555544444444444444444444444333
No 9
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=97.07 E-value=0.061 Score=40.96 Aligned_cols=91 Identities=8% Similarity=0.043 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Q psy2889 70 KELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARE-----------NLHNEIVNLAIKS 138 (163)
Q Consensus 70 ~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~-----------~l~~~i~~la~~~ 138 (163)
..+.+|+.+|.+|...|..+++.++.++..+++..+....+....+++..+..... ..+.++.+-..+-
T Consensus 23 fI~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~i~~S~~~~~aR~~vL~ar~e~i~~v~~~ 102 (233)
T 4efa_E 23 FIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMRLKVLSAREQSLDGIFEE 102 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888888888888777777777777666666655544333 3344555555555
Q ss_pred HHHHHhhhc-CHHHHHHHHHHHH
Q psy2889 139 AEKILNNKI-TIEVNSSLLNQLK 160 (163)
Q Consensus 139 a~kll~~~i-~~~~~~~li~~~i 160 (163)
|.+-|..-. |++.-..++..++
T Consensus 103 a~~~L~~~~~d~~~Y~~lL~~Li 125 (233)
T 4efa_E 103 TKEKLSGIANNRDEYKPILQSLI 125 (233)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHH
Confidence 555555432 4555555555554
No 10
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=96.89 E-value=0.023 Score=34.21 Aligned_cols=56 Identities=13% Similarity=0.079 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 61 VSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEI 116 (163)
Q Consensus 61 a~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i 116 (163)
......+....+..|+.++..++.++..+|....+.++..|+.+++.....+...+
T Consensus 4 L~~Ar~ea~~Ii~~A~~~a~~~~~e~~~~A~~ea~~i~~~A~~eie~ek~~A~~~L 59 (61)
T 1l2p_A 4 LKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREEL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556677777778888888888888888888888888888888887777776655
No 11
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A
Probab=96.07 E-value=0.0011 Score=48.80 Aligned_cols=64 Identities=16% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 70 KELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVN 133 (163)
Q Consensus 70 ~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~ 133 (163)
..+.+|+.++..|+.+|+.+++.+.+++..+++.+.++++++++.+++.++..+..++..+...
T Consensus 10 ~il~~A~~~a~~il~eA~~~a~~i~~~a~~e~~~~~~~~~~~a~~e~~~~~~~~~s~~~~~~r~ 73 (198)
T 2dm9_A 10 EINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRIIANARLEVRR 73 (198)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666666666666666666666666666665555444443
No 12
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=96.02 E-value=0.18 Score=34.66 Aligned_cols=38 Identities=8% Similarity=0.003 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--HHHHH
Q psy2889 116 IIKQINIARENLHNEIVNLAIKSAEKILNNKIT--IEVNS 153 (163)
Q Consensus 116 i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~--~~~~~ 153 (163)
++.+...-..+++.....---.++..||+.-.| |+.|.
T Consensus 77 ~e~eT~~ki~~i~~~~~~~k~~Vv~~Ll~~V~dvkpeiH~ 116 (119)
T 4efa_G 77 AEAGVQGELAEIKKIAEKKKDDVVKILIETVIKPSAEVHI 116 (119)
T ss_dssp TTSSSHHHHHHHHHHHHHTHHHHHHHHHHHHSCC------
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCCC
Confidence 333444445566666666566666666665433 55543
No 13
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=95.54 E-value=0.052 Score=31.81 Aligned_cols=32 Identities=28% Similarity=0.270 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 71 ELIATHEENKNRINLTEKQCKLIIEKSKKKAT 102 (163)
Q Consensus 71 ~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~ 102 (163)
.+.+|+.++..|+.+|+.+++.+..+...+|.
T Consensus 15 I~~eA~~eA~~Il~eA~~eA~~Ii~eA~~~Ae 46 (52)
T 2kk7_A 15 ILDDAKAEANKIISEAEAEKAKILEKAKEEAE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555544443
No 14
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=93.93 E-value=0.85 Score=30.21 Aligned_cols=69 Identities=16% Similarity=0.200 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 60 KVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIV 132 (163)
Q Consensus 60 ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~ 132 (163)
.......+...+|..|+.++...+..|..++..+..++...++... .+-+..+..+..+.+.+.+....
T Consensus 10 ~LAerE~~L~~~lE~Ar~eA~~~v~~AEAeA~ril~eAe~~a~~l~----ae~r~~~~~Et~ri~~eara~Ae 78 (105)
T 3v6i_B 10 SLAEKEKQLLERLEAAKKEAEERVKRAEAEAKALLEEAEAKAKALE----AQYRERERAETEALLARYRERAE 78 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455667788899999999999888888877766655555544 44444444444444444444433
No 15
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=93.88 E-value=0.39 Score=27.99 Aligned_cols=26 Identities=27% Similarity=0.121 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 92 LIIEKSKKKATEEANIILYNARVEII 117 (163)
Q Consensus 92 ~~~~~~~~~A~~e~~~~~~~a~~~i~ 117 (163)
...+.++.+|+.+++.++..|+.+.+
T Consensus 21 ~eA~~Il~eA~~eA~~Ii~eA~~~Ae 46 (52)
T 2kk7_A 21 AEANKIISEAEAEKAKILEKAKEEAE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444555555555554443
No 16
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=93.35 E-value=0.11 Score=30.77 Aligned_cols=31 Identities=13% Similarity=0.188 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 72 LIATHEENKNRINLTEKQCKLIIEKSKKKAT 102 (163)
Q Consensus 72 L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~ 102 (163)
+.+|..+|..++++|..++..++.+++.+|+
T Consensus 21 IKeAE~~A~~iVeeA~~ea~~ii~eAreeAk 51 (56)
T 2k6i_A 21 VKLAEEQAVKEIEEAKNRAEQIKAEAIEEAK 51 (56)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666665555555444
No 17
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=90.69 E-value=0.31 Score=35.57 Aligned_cols=32 Identities=13% Similarity=-0.019 Sum_probs=27.3
Q ss_pred cCchHH-HHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy2889 9 SADTGA-HSHGIRRTIKCCFTKKFIWPPLIKAL 40 (163)
Q Consensus 9 ~~~~~~-~~~~i~Flil~~~l~~~l~~pi~~~l 40 (163)
.++++. +-.+|||+|+.+++|.++.+|+.++-
T Consensus 89 ~i~yG~Fi~avInFlIIA~vIYFliVk~iNklk 121 (174)
T 2oar_A 89 TIDLNVLLSAAINFFLIAFAVYFLVVLPYNTLR 121 (174)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356665 78899999999999999999998873
No 18
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=89.34 E-value=5.5 Score=29.88 Aligned_cols=18 Identities=17% Similarity=-0.012 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy2889 86 TEKQCKLIIEKSKKKATE 103 (163)
Q Consensus 86 A~~~a~~~~~~~~~~A~~ 103 (163)
++......+++...++..
T Consensus 54 ~~~~i~~~~ek~~kq~e~ 71 (233)
T 4efa_E 54 ETNNIDGNFKSKLKKAML 71 (233)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 19
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=88.62 E-value=4.3 Score=27.67 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 71 ELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEI 116 (163)
Q Consensus 71 ~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i 116 (163)
.|-.|..+|.+|+.+|+..-.....++..+|..|++....+-..+.
T Consensus 14 qLL~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~yR~qkE~eF 59 (119)
T 4efa_G 14 TLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKEL 59 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777776666555555555555555444443333
No 20
>2o6n_A RH4B designed peptide; right-handed, tetramer, de novo protein; HET: CGU; 1.10A {Synthetic} SCOP: k.17.1.1 PDB: 1tgg_A*
Probab=88.11 E-value=1.6 Score=22.29 Aligned_cols=29 Identities=24% Similarity=0.486 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 99 KKATEEANIILYNARVEIIKQINIARENL 127 (163)
Q Consensus 99 ~~A~~e~~~~~~~a~~~i~~e~~~a~~~l 127 (163)
++|++++.-++..|+++|-.+..++++++
T Consensus 5 eqakkeiaylikkakeeileeikkakqei 33 (35)
T 2o6n_A 5 EQAKKEIAYLIKKAKEEILEEIKKAKQEI 33 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777777777777777777666553
No 21
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=87.86 E-value=1.2 Score=26.36 Aligned_cols=29 Identities=10% Similarity=0.110 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 65 RKRIQKELIATHEENKNRINLTEKQCKLI 93 (163)
Q Consensus 65 ~~e~e~~L~~a~~ea~~ii~~A~~~a~~~ 93 (163)
..+....+.+|..++.+|+.+|+.+|..+
T Consensus 25 E~~A~~iVeeA~~ea~~ii~eAreeAkeI 53 (56)
T 2k6i_A 25 EEQAVKEIEEAKNRAEQIKAEAIEEAKKL 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677777777777777777654
No 22
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=77.26 E-value=33 Score=29.19 Aligned_cols=19 Identities=16% Similarity=0.111 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy2889 124 RENLHNEIVNLAIKSAEKI 142 (163)
Q Consensus 124 ~~~l~~~i~~la~~~a~kl 142 (163)
+++++.+|..|=++|.-++
T Consensus 140 Ledq~~kIQRLEvDIdiqi 158 (562)
T 3ghg_A 140 VRAQLVDMKRLEVDIDIKI 158 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 23
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=74.88 E-value=85 Score=32.75 Aligned_cols=54 Identities=9% Similarity=0.123 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 33 WPPLIKALDDRKKKIADILAAANSEK---EKVSYDRKRIQKELIATHEENKNRINLT 86 (163)
Q Consensus 33 ~~pi~~~l~~R~~~I~~~l~~A~~~~---~ea~~~~~e~e~~L~~a~~ea~~ii~~A 86 (163)
+.-=.+-+.+++.+....++.-..+. ++.+..+.+.+.+|.+...++++++.+-
T Consensus 1908 l~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i 1964 (3245)
T 3vkg_A 1908 INEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQM 1964 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455556666666655544444 4445555566677888888877665543
No 24
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=72.05 E-value=5.1 Score=21.30 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy2889 19 IRRTIKCCFTKKFIWPPLIKALDDRK 44 (163)
Q Consensus 19 i~Flil~~~l~~~l~~pi~~~l~~R~ 44 (163)
+-|+++++++|.+++.|=.+=-.+++
T Consensus 7 l~~v~~~~ifYFl~iRPQ~Kr~K~~~ 32 (37)
T 2rdd_B 7 LMLVVFGLIFYFMILRPQQKRTKEHK 32 (37)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33444555666677788665554444
No 25
>3hzq_A Large-conductance mechanosensitive channel; intermediate state mechanosensitive channel osmoregulation, cell membrane, ION transport; 3.82A {Staphylococcus aureus subsp}
Probab=68.42 E-value=6.8 Score=26.47 Aligned_cols=28 Identities=11% Similarity=-0.217 Sum_probs=20.5
Q ss_pred CchHH-HHHHHHHHHHHHHHHHHhHHHHHH
Q psy2889 10 ADTGA-HSHGIRRTIKCCFTKKFIWPPLIK 38 (163)
Q Consensus 10 ~~~~~-~~~~i~Flil~~~l~~~l~~pi~~ 38 (163)
++++. +-.+|||+|+-++++. +.+|+.+
T Consensus 81 i~yG~Fi~avInFlIiA~viF~-~vk~~nk 109 (114)
T 3hzq_A 81 IKYGLFIQSVIDFIIIAFALFI-FVKIANT 109 (114)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred eeHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 44554 7889999999998854 4567654
No 26
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=60.31 E-value=20 Score=20.80 Aligned_cols=26 Identities=4% Similarity=-0.112 Sum_probs=13.7
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHhHH
Q psy2889 9 SADTGAHSHGIRRTIKCCFTKKFIWP 34 (163)
Q Consensus 9 ~~~~~~~~~~i~Flil~~~l~~~l~~ 34 (163)
.|-|-++..++.-++++.++...+||
T Consensus 7 vp~WiIi~svl~GLLLL~Lii~~LwK 32 (54)
T 2l8s_A 7 VPLWVILLSAFAGLLLLMLLILALWK 32 (54)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555554
No 27
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=59.24 E-value=1e+02 Score=27.80 Aligned_cols=20 Identities=10% Similarity=0.170 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy2889 123 ARENLHNEIVNLAIKSAEKI 142 (163)
Q Consensus 123 a~~~l~~~i~~la~~~a~kl 142 (163)
+.-+-.....+|.+.-+..+
T Consensus 768 ~el~~~~~~~ele~~k~~~l 787 (861)
T 2zuo_A 768 MELIYARAQLELEVSKAQQL 787 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 33333444455555555444
No 28
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1
Probab=58.08 E-value=51 Score=23.96 Aligned_cols=74 Identities=15% Similarity=0.204 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 34 PPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNAR 113 (163)
Q Consensus 34 ~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~ 113 (163)
||++. +-|++.+...-..++..+-.....+.++...+.... . +-++-...++...+.+.+..-.+++.+.+..+
T Consensus 105 P~lTe--ErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~---k-iseD~~k~~e~~iQkltd~~i~~id~~~~~KE 178 (184)
T 1ge9_A 105 PPLTE--ERRRELVRLLHKITEEARVRVRNVRREAKEMIEELE---G-ISEDEKKRALERLQKLTDKYIDEINKLMEAKE 178 (184)
T ss_dssp CCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST---T-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 344444444444444444444444444444444322 1 22333334444444444444444444444333
No 29
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=58.02 E-value=21 Score=19.57 Aligned_cols=30 Identities=17% Similarity=0.241 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy2889 15 HSHGIRRTIKCCFTKKFIWPPLIKALDDRK 44 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~~pi~~~l~~R~ 44 (163)
+.-++...+++.++--.+|+-+..+-|.|+
T Consensus 13 v~gvi~~ivliGl~lLliwk~~~~i~DrrE 42 (43)
T 2k9j_B 13 LLSVMGAILLIGLAALLIWKLLITIHDRKE 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHheehhhc
Confidence 455666677778888888888877766653
No 30
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=57.12 E-value=32 Score=21.46 Aligned_cols=30 Identities=17% Similarity=0.241 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy2889 15 HSHGIRRTIKCCFTKKFIWPPLIKALDDRK 44 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~~pi~~~l~~R~ 44 (163)
+.-++..+++++++--++|+-+..+-|.|+
T Consensus 14 v~gvi~gilliGllllliwk~~~~i~DrrE 43 (79)
T 2knc_B 14 LLSVMGAILLIGLAALLIWKLLITIHDRKE 43 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666677777777788887766655554
No 31
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=54.08 E-value=9.6 Score=26.12 Aligned_cols=42 Identities=12% Similarity=0.007 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 100 KATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEK 141 (163)
Q Consensus 100 ~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~k 141 (163)
.-..+..+....+..++..........+...+....-.++.+
T Consensus 71 ~~~~~~q~~~~~~~~~l~~~~~~~~~~i~~~i~~ai~~vak~ 112 (143)
T 1u2m_A 71 AQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANS 112 (143)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555566677777777777777777776666665553
No 32
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=52.75 E-value=28 Score=19.38 Aligned_cols=24 Identities=13% Similarity=0.131 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 81 NRINLTEKQCKLIIEKSKKKATEE 104 (163)
Q Consensus 81 ~ii~~A~~~a~~~~~~~~~~A~~e 104 (163)
+|+.+.+++..+..+++++..+.+
T Consensus 15 EIL~E~RkElqK~K~EIIeAi~~E 38 (45)
T 1use_A 15 ELLEEVKKELQKVKEEIIEAFVQE 38 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 33
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=42.19 E-value=1e+02 Score=22.84 Aligned_cols=31 Identities=19% Similarity=0.171 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 43 RKKKIADILAAANSEKEKVSYDRKRIQKELI 73 (163)
Q Consensus 43 R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~ 73 (163)
|++.+...-..++..+-.....+.++...+.
T Consensus 134 RkelvK~ak~~~E~aKvaIRniRrda~~~lK 164 (209)
T 4gfq_A 134 RRDLVKVVKKYAEEAKVAVRNVRRDGNDDLK 164 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333333444444433333333333333
No 34
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=40.63 E-value=1e+02 Score=22.34 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 41 DDRKKKIADILAAANSEKEKVSYDRKRIQKELI 73 (163)
Q Consensus 41 ~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~ 73 (163)
+-|++.+...-..++..+-.....+.++...+.
T Consensus 108 ErRkelvK~~k~~~E~aKvaiRniRrda~~~lK 140 (185)
T 1dd5_A 108 EQREKWVKKAKEIVEEGKIAIRNIRREILKKIK 140 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444334444444444334444333333
No 35
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=40.37 E-value=1e+02 Score=22.32 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 41 DDRKKKIADILAAANSEKEKVSYDRKRIQKELI 73 (163)
Q Consensus 41 ~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~ 73 (163)
+-|++.+...-..++..+-.....+.++...+.
T Consensus 108 ErRkelvK~~k~~~E~aKvaiRniRrda~~~lK 140 (185)
T 1ise_A 108 ERRKDLTKIVRGEAEQARVAVRNVGRDANDKVK 140 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443334444444433333333333333
No 36
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=39.67 E-value=1.1e+02 Score=22.25 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 41 DDRKKKIADILAAANSEKEKVSYDRKRIQKELI 73 (163)
Q Consensus 41 ~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~ 73 (163)
+-|++.+...-..++..+-.....+.++...+.
T Consensus 108 ErRkelvK~~k~~~E~aKvaiRniRrda~~~lK 140 (185)
T 1wqg_A 108 ERRRELVKQAKHKGEEAKVSVRNIRRKAMEELH 140 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443334444444433333333333333
No 37
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=39.59 E-value=1.1e+02 Score=22.24 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 42 DRKKKIADILAAANSEKEKVSYDRKRIQKELI 73 (163)
Q Consensus 42 ~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~ 73 (163)
-|++.+...-..++..+-.....+.++...+.
T Consensus 109 rRkelvK~~k~~~E~aKvaiRniRrda~~~lK 140 (185)
T 1is1_A 109 RRKDLVKIVRGEAEGGRVAVRNIRRDANNDLK 140 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433334444444333333333333333
No 38
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=39.51 E-value=1.1e+02 Score=22.24 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 42 DRKKKIADILAAANSEKEKVSYDRKRIQKELI 73 (163)
Q Consensus 42 ~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~ 73 (163)
-|++.+...-..++..+-.....+.++...+.
T Consensus 110 rRkelvK~~k~~~E~aKvaiRniRrda~~~lK 141 (185)
T 1eh1_A 110 RRKDLVRAVRQYAEEGRVAIRNIRREALDKLK 141 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443334444444433333333333333
No 39
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=39.47 E-value=46 Score=18.01 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 41 DDRKKKIADILAAANSEKEKVSYDRKRIQK 70 (163)
Q Consensus 41 ~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~ 70 (163)
++|+++| +.+....++..+.++.+|..
T Consensus 11 ~~rkerI---v~eCnavrqALQdLlseY~~ 37 (40)
T 4e17_B 11 DDRRERI---VAECNAVRQALQDLLSEYMG 37 (40)
T ss_dssp CHHHHHH---HHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 4678888 77777788888888888864
No 40
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=38.34 E-value=1.9e+02 Score=24.69 Aligned_cols=33 Identities=9% Similarity=0.147 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 103 EEANIILYNARVEIIKQINIARENLHNEIVNLAI 136 (163)
Q Consensus 103 ~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~ 136 (163)
.++++.+..-+.+|.... +-++.|+..+.++-+
T Consensus 113 ~ELRRrIqyLKekVdnQl-snIrvLQsnLedq~~ 145 (562)
T 3ghg_A 113 EDLRSRIEVLKRKVIEKV-QHIQLLQKNVRAQLV 145 (562)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 344444444444444444 333444444444433
No 41
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=34.07 E-value=13 Score=24.27 Aligned_cols=26 Identities=0% Similarity=-0.183 Sum_probs=18.5
Q ss_pred ccccCchHH-HHHHHHHHHHHHHHHHH
Q psy2889 6 AIQSADTGA-HSHGIRRTIKCCFTKKF 31 (163)
Q Consensus 6 ~~l~~~~~~-~~~~i~Flil~~~l~~~ 31 (163)
|.+.+++.. ++.-+.|++++++|+.|
T Consensus 64 ~GlKV~P~~VLv~sl~Fi~~Vi~Lhi~ 90 (96)
T 2wwb_C 64 PGLKVGPVPVLVMSLLFIASVFMLHIW 90 (96)
T ss_dssp CCCCCSSCSHHHHHHHHHHHHHHHSCS
T ss_pred CceEECCEEehhhHHHHHHHHHHHHHh
Confidence 456666654 77788888888888654
No 42
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=33.70 E-value=38 Score=19.50 Aligned_cols=27 Identities=4% Similarity=-0.245 Sum_probs=19.5
Q ss_pred ccccCchHH-HHHHHHHHHHHHHHHHHh
Q psy2889 6 AIQSADTGA-HSHGIRRTIKCCFTKKFI 32 (163)
Q Consensus 6 ~~l~~~~~~-~~~~i~Flil~~~l~~~l 32 (163)
+.+.+++.. +...+.|.+++++|+..+
T Consensus 24 ~giKi~P~~Vl~~si~~i~~V~~L~~~~ 51 (53)
T 1rh5_C 24 SKIRVKPEHVIGVTVAFVIIEAILTYGR 51 (53)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CccccCCeehhhhHHHHHHHHHHHHHHH
Confidence 456667765 777888888888887543
No 43
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=33.29 E-value=26 Score=16.48 Aligned_cols=15 Identities=27% Similarity=0.558 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy2889 35 PLIKALDDRKKKIAD 49 (163)
Q Consensus 35 pi~~~l~~R~~~I~~ 49 (163)
.+..+|++|++.+..
T Consensus 4 SLqRFleKRk~R~~~ 18 (22)
T 3ogk_Q 4 SLHRFLEKRKDRVTS 18 (26)
T ss_pred hHHHHHHHHHHHhhc
Confidence 477899999987753
No 44
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=33.16 E-value=59 Score=18.77 Aligned_cols=20 Identities=5% Similarity=0.008 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHhHH
Q psy2889 15 HSHGIRRTIKCCFTKKFIWP 34 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~~ 34 (163)
+..++.-++++.++...+||
T Consensus 16 i~svl~GLllL~li~~~LwK 35 (54)
T 2knc_A 16 LVGVLGGLLLLTILVLAMWK 35 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555553
No 45
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=31.38 E-value=19 Score=24.15 Aligned_cols=14 Identities=7% Similarity=-0.325 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHH
Q psy2889 27 FTKKFIWPPLIKAL 40 (163)
Q Consensus 27 ~l~~~l~~pi~~~l 40 (163)
++.+.+.+|+..+.
T Consensus 78 ~~~~~i~~pl~~l~ 91 (163)
T 2f95_B 78 TLGGDTAASLSTLA 91 (163)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 34455567776544
No 46
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=30.75 E-value=2.5e+02 Score=23.80 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy2889 72 LIATHEENKNRINLTEKQC 90 (163)
Q Consensus 72 L~~a~~ea~~ii~~A~~~a 90 (163)
+.+++.+++.++-.++...
T Consensus 532 ~~~~~n~~e~~~~~~~~~~ 550 (605)
T 4b9q_A 532 LVQTRNQGDHLLHSTRKQV 550 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554433
No 47
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus}
Probab=30.29 E-value=1.1e+02 Score=22.04 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 71 ELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQI 120 (163)
Q Consensus 71 ~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~ 120 (163)
.+.+.|++-..-+++--...+...++.+++|+++++.-...-..+++.-+
T Consensus 86 sIRKWREEQkkRLEeRDA~SekkKeEwrEKAKKELDDWYenYNEQ~EKnK 135 (190)
T 3lvg_D 86 SIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135 (190)
T ss_dssp HHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666555555555555566666666666666666555555555444
No 48
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=29.99 E-value=1.5e+02 Score=21.16 Aligned_cols=49 Identities=14% Similarity=0.148 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 34 PPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNR 82 (163)
Q Consensus 34 ~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~i 82 (163)
+...+++.+|...-....+++...-..+...+......+..++.+...+
T Consensus 77 ~~yI~llrErea~lEqkVaeq~e~Ve~e~q~Le~ar~el~qArke~eKf 125 (169)
T 3k29_A 77 KAYIKVVAIQLSEEEEKVNKQKENVLAASKELERAEVELTKRRKEEEKT 125 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888888888888888888888888888888888887777766
No 49
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=29.61 E-value=35 Score=21.80 Aligned_cols=26 Identities=4% Similarity=-0.210 Sum_probs=15.1
Q ss_pred ccccCchHH-HHHHHHHHHHHHHHHHH
Q psy2889 6 AIQSADTGA-HSHGIRRTIKCCFTKKF 31 (163)
Q Consensus 6 ~~l~~~~~~-~~~~i~Flil~~~l~~~ 31 (163)
|.+.+++.. +...+.|+.++++|.-|
T Consensus 55 ~GlKV~P~~VLv~sl~FIa~VilLHI~ 81 (87)
T 2ww9_C 55 NGFRVDSLVVLFLSVGFIFSVIALHLL 81 (87)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHC---
T ss_pred CceEEcCeeehhhHHHHHHHHHHHHHh
Confidence 456667765 77778888888877653
No 50
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=28.08 E-value=2.7e+02 Score=23.46 Aligned_cols=33 Identities=18% Similarity=0.136 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcC-HHHHHHHHHHH
Q psy2889 127 LHNEIVNLAIKSAEKILNNKIT-IEVNSSLLNQL 159 (163)
Q Consensus 127 l~~~i~~la~~~a~kll~~~i~-~~~~~~li~~~ 159 (163)
+=.....+|-++|+..=|+.+. .++--+.++++
T Consensus 445 yGeKykkIAkELAe~fKGKKIRSvDDALaSfEKy 478 (602)
T 1cii_A 445 YGAKAEQLAREMAGQAKGKKIRNVEEALKTYEKY 478 (602)
T ss_dssp HCTHHHHHHHHHHHTTTTCBCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCccCCHHHHHHHHHHH
Confidence 3334455566666555455553 33344444443
No 51
>1q90_N Cytochrome B6F complex subunit PETN; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.27.1
Probab=27.99 E-value=38 Score=17.23 Aligned_cols=25 Identities=12% Similarity=-0.150 Sum_probs=14.5
Q ss_pred cccccccCchHHHHHHHHHHHHHHH
Q psy2889 3 LIYAIQSADTGAHSHGIRRTIKCCF 27 (163)
Q Consensus 3 ~~~~~l~~~~~~~~~~i~Flil~~~ 27 (163)
|+++++++.|..+..+..|.+-+.+
T Consensus 1 ~~mdivsl~WaalmvvfTfSlslVV 25 (31)
T 1q90_N 1 GEPAIVQIGWAATCVMFSFSLSLVV 25 (31)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeeeHHHHHHHHHhheeeEEEE
Confidence 3566666666655656666555443
No 52
>4e18_B Catenin alpha-1; four helix bundle, cell adhesion; 2.40A {Mus musculus}
Probab=27.20 E-value=85 Score=18.46 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 41 DDRKKKIADILAAANSEKEKVSYDRKRIQK 70 (163)
Q Consensus 41 ~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~ 70 (163)
+.|+++| +.+-...++..+.++.+|..
T Consensus 30 ~~rke~I---v~eCnavrqALQdLlsEY~~ 56 (59)
T 4e18_B 30 DDRRERI---VAECNAVRQALQDLLSEYMG 56 (59)
T ss_dssp -CHHHHH---HHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 5677777 67777777888888888863
No 53
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=26.57 E-value=1.3e+02 Score=19.26 Aligned_cols=41 Identities=12% Similarity=0.227 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 34 PPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIA 74 (163)
Q Consensus 34 ~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~ 74 (163)
.-+...+++|.+.|...+..-+......+....+.+..|..
T Consensus 69 ~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 69 DKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667778888888777777766666666666655555543
No 54
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=26.46 E-value=1.3e+02 Score=19.03 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 34 PPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKEL 72 (163)
Q Consensus 34 ~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L 72 (163)
.-+...+++|.+.|.+.+..-+......+....+.+..|
T Consensus 64 ~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 64 DELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888888777777666666666655555544
No 55
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=26.33 E-value=1.4e+02 Score=22.05 Aligned_cols=51 Identities=14% Similarity=0.149 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 71 ELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQIN 121 (163)
Q Consensus 71 ~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~ 121 (163)
.+.++|.+-+.-|++--...+...++.+++|+++++.-..+-..++++-+.
T Consensus 101 sIRkWREEq~kRLeekDa~sekkk~E~rekAkKeLddwY~~yneqlEK~ka 151 (205)
T 3lvh_D 101 SIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI 151 (205)
T ss_dssp HHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677776666665555566666677777777776666665555554443
No 56
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=25.90 E-value=76 Score=16.42 Aligned_cols=15 Identities=7% Similarity=-0.126 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHHH
Q psy2889 12 TGAHSHGIRRTIKCC 26 (163)
Q Consensus 12 ~~~~~~~i~Flil~~ 26 (163)
|.++...|||++--+
T Consensus 15 WalllLaINflVAay 29 (35)
T 1jb0_X 15 WAVLLLAINFLVAAY 29 (35)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334555666665443
No 57
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=25.30 E-value=26 Score=16.26 Aligned_cols=13 Identities=31% Similarity=0.544 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHH
Q psy2889 34 PPLIKALDDRKKK 46 (163)
Q Consensus 34 ~pi~~~l~~R~~~ 46 (163)
..+..+|++|++.
T Consensus 8 ~SLqRFleKRk~R 20 (21)
T 3ogl_Q 8 ASLHRFLEKRKDR 20 (26)
T ss_pred HHHHHHHHHhhcc
Confidence 3577888888765
No 58
>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J
Probab=25.29 E-value=1.2e+02 Score=18.39 Aligned_cols=54 Identities=17% Similarity=0.129 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 71 ELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIAR 124 (163)
Q Consensus 71 ~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~ 124 (163)
.+...|.+...-|..--.......++.+.+|+++++....+=...++.-+...+
T Consensus 10 ~Ir~WRE~~~~~i~erd~~~~~~k~e~~~~A~k~iddfY~~yn~k~ek~~~~nR 63 (70)
T 1xi4_J 10 SIRKWREEQTERLEALDANSRKQEAEWKEKAIKELDEWYARQDEQLQKTKANNR 63 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666666777777777776666666655555555544
No 59
>2lhr_A Iron-regulated surface determinant protein H; heme acquisition, iron uptake, NEAT domain, hemoglobin recep metal transport; NMR {Staphylococcus aureus subsp}
Probab=23.97 E-value=1.2e+02 Score=18.48 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 62 SYDRKRIQKELIATHEENKNRINLT 86 (163)
Q Consensus 62 ~~~~~e~e~~L~~a~~ea~~ii~~A 86 (163)
+.+.++|.++|.+++.+.++-...|
T Consensus 41 eklkaeYk~KL~~tk~~Ld~qv~SA 65 (78)
T 2lhr_A 41 EKYKAEYKKKLDQTRVELADQVKSA 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888877776554443
No 60
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=23.13 E-value=1.6e+02 Score=19.07 Aligned_cols=30 Identities=20% Similarity=0.163 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 85 LTEKQCKLIIEKSKKKATEEANIILYNARV 114 (163)
Q Consensus 85 ~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~ 114 (163)
..+...+...++..+..=.++..|...++.
T Consensus 47 ~~~~~ie~ElEeLTasLFeEAN~MVa~ar~ 76 (97)
T 2eqb_B 47 EEADKLNKEVEDLTASLFDEANNMVADARK 76 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666666666643
No 61
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=22.55 E-value=93 Score=16.16 Aligned_cols=19 Identities=0% Similarity=-0.234 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q psy2889 15 HSHGIRRTIKCCFTKKFIW 33 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~ 33 (163)
+..+-.|+++.|+..+++|
T Consensus 12 V~ilg~~I~i~W~~vf~lF 30 (34)
T 3s8f_C 12 ILVLTLTILVFWLGVYAVF 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHeee
Confidence 5555666667776666665
No 62
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=22.46 E-value=1e+02 Score=16.70 Aligned_cols=20 Identities=5% Similarity=0.008 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHhHH
Q psy2889 15 HSHGIRRTIKCCFTKKFIWP 34 (163)
Q Consensus 15 ~~~~i~Flil~~~l~~~l~~ 34 (163)
+..++.-++++.++...+||
T Consensus 14 i~s~l~GLllL~li~~~LwK 33 (42)
T 2k1a_A 14 LVGVLGGLLLLTILVLAMWK 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555554
No 63
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=22.36 E-value=1.9e+02 Score=19.58 Aligned_cols=35 Identities=6% Similarity=0.265 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 38 KALDDRKKKIADILAAANSEKEKVSYDRKRIQKEL 72 (163)
Q Consensus 38 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L 72 (163)
.++.++.+.+...+...+......+.....|+..+
T Consensus 84 ~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~ 118 (142)
T 3gp4_A 84 ELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHL 118 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444433
No 64
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=21.58 E-value=2.3e+02 Score=20.25 Aligned_cols=28 Identities=4% Similarity=-0.047 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889 51 LAAANSEKEKVSYDRKRIQKELIATHEE 78 (163)
Q Consensus 51 l~~A~~~~~ea~~~~~e~e~~L~~a~~e 78 (163)
++-..+.+.+.+++.++|..+....+.+
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~q 93 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQ 93 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566666666666665554443
No 65
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=21.53 E-value=4.8e+02 Score=24.06 Aligned_cols=11 Identities=18% Similarity=0.271 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q psy2889 66 KRIQKELIATH 76 (163)
Q Consensus 66 ~e~e~~L~~a~ 76 (163)
...+.++.+.+
T Consensus 987 ~~L~~e~~~l~ 997 (1080)
T 2dfs_A 987 LSLQEEIAKLR 997 (1080)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 66
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=21.33 E-value=3.4e+02 Score=22.93 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy2889 72 LIATHEENKNRINLTEK 88 (163)
Q Consensus 72 L~~a~~ea~~ii~~A~~ 88 (163)
+.+++.+++..+.+.+.
T Consensus 532 ~~~~~n~~e~~~~~~~~ 548 (605)
T 2kho_A 532 LVQTRNQGDHLLHSTRK 548 (605)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 67
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8
Probab=20.84 E-value=2e+02 Score=19.42 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy2889 90 CKLIIEKSKKKATEEANIILYN 111 (163)
Q Consensus 90 a~~~~~~~~~~A~~e~~~~~~~ 111 (163)
++..++.+....-.+++.+...
T Consensus 94 ~e~eIQKLTDkyIkkID~ll~~ 115 (123)
T 3lhp_S 94 SLWDVQKLTDAAIKKIEAALAD 115 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334443333444443333
No 68
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=20.53 E-value=1.8e+02 Score=18.85 Aligned_cols=12 Identities=0% Similarity=0.063 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q psy2889 61 VSYDRKRIQKEL 72 (163)
Q Consensus 61 a~~~~~e~e~~L 72 (163)
++.+.-..+..|
T Consensus 23 aEsliy~~e~~L 34 (120)
T 2p32_A 23 LESYAFNLKQTI 34 (120)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 69
>2oy9_A UPF0223 protein BH2638; PFAM, structural genomics, PSI-2, protein structure initiative; 1.60A {Bacillus halodurans c-125} SCOP: a.276.1.1
Probab=20.37 E-value=47 Score=21.66 Aligned_cols=23 Identities=9% Similarity=-0.215 Sum_probs=15.8
Q ss_pred cccccccCchHH--HHHHHHHHHHHH
Q psy2889 3 LIYAIQSADTGA--HSHGIRRTIKCC 26 (163)
Q Consensus 3 ~~~~~l~~~~~~--~~~~i~Flil~~ 26 (163)
-.+| |++||+. +..+++|+=.+=
T Consensus 5 Y~YP-ld~dWSteEii~Vi~F~~~VE 29 (98)
T 2oy9_A 5 TTLP-ISLDWSTEEVIDVVHFFQAIE 29 (98)
T ss_dssp -CCC-CCCCCCHHHHHHHHHHHHHHH
T ss_pred CCCC-CCCCCCHHHHHHHHHHHHHHH
Confidence 3456 4888876 888888876543
Done!