RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2889
         (163 letters)



>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain
           {Escherichia coli [TaxId: 562]}
          Length = 61

 Score = 30.0 bits (68), Expect = 0.022
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query: 70  KELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENL 127
            +L     E +  I    K+   I++++K +A +E   I+  A+ EI  +   ARE L
Sbjct: 2   DQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREEL 59


>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal
          fragment {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 27.4 bits (60), Expect = 0.81
 Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 5/50 (10%)

Query: 47 IADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEK 96
          I+DI    + E E      KRI KEL     + K    L     K  + K
Sbjct: 9  ISDIRNCKSKEAE-----IKRINKELANIRSKFKGDKALDGYSKKKYVCK 53


>d1jk7a_ d.159.1.3 (A:) Protein phosphatase-1 (PP-1) {Human (Homo
           sapiens), beta isoform [TaxId: 9606]}
          Length = 294

 Score = 25.4 bits (55), Expect = 3.3
 Identities = 9/50 (18%), Positives = 22/50 (44%)

Query: 68  IQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEII 117
           IQ+ L     +    + L E + + +  KS++    +  ++   A ++I 
Sbjct: 8   IQRLLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKIC 57


>d1auia_ d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calcineurin A
           subunit) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 473

 Score = 24.6 bits (53), Expect = 7.8
 Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 2/76 (2%)

Query: 42  DRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKA 101
           DR  K      +     ++V  +  + + +++  H   + R  L E     II +     
Sbjct: 2   DRVVKAVPFPPSHRLTAKEVFDNDGKPRVDILKAHLMKEGR--LEESVALRIITEGASIL 59

Query: 102 TEEANIILYNARVEII 117
            +E N++  +A V + 
Sbjct: 60  RQEKNLLDIDAPVTVC 75


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.131    0.353 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 559,535
Number of extensions: 25521
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 25
Length of query: 163
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 84
Effective length of database: 1,322,926
Effective search space: 111125784
Effective search space used: 111125784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.2 bits)