BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2890
(893 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucine In The Editing Conformation
pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
Length = 880
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/866 (42%), Positives = 521/866 (60%), Gaps = 43/866 (4%)
Query: 1 MQKKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYT 60
MQ++Y EIE Q +W++ ++ TE++++ K+Y SMLPYPSG+LHMGHVRNYT
Sbjct: 21 MQEQYRPEEIESKVQLHWDEKRTFEVTEDESK---EKYYCLSMLPYPSGRLHMGHVRNYT 77
Query: 61 INDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGL 120
I DV+ RY RM G NVL P+GWDAFG+PAE AA+ NNT+PA WTYDN++YMK QL LG
Sbjct: 78 IGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKMLGF 137
Query: 121 AIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGW 180
DWSRE+ TC+P+YY+W Q F +++K+G++YKKT VNW P ++TVLANEQVI+G W
Sbjct: 138 GYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCW 197
Query: 181 RSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIGKSKGIFLAFPH 240
R D +E+K+IP ++ KIT YA+ELL + KL +WP V+ MQ NWIG+S+G+ + F
Sbjct: 198 RCDTKVERKEIPQWFIKITAYADELLNDL-DKLDHWPDTVKTMQRNWIGRSEGVEITF-- 254
Query: 241 NIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYK 300
N+ D + L ++TTR D G T+ ++ HPLA AA NN L FI E +
Sbjct: 255 NVND--------YDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECR 306
Query: 301 --KNNNIESNNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAAIGVPAHNKHDF 358
K E + KK + T K +HPLT +EI V+ N+V+ + A + VP H++ D+
Sbjct: 307 NTKVAEAEMATMEKKGVDTGFKAVHPLTGEEIPVWAANFVLMEYGTGAVMAVPGHDQRDY 366
Query: 359 YFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDL 418
FA K+ L IK VI + S D + E NS ++N + H+ A NAI+ L
Sbjct: 367 EFASKYGLNIKPVILAADGSEPDLSQQAL---TEKGVLFNSGEFNGLDHEAAFNAIADKL 423
Query: 419 IKLGLGNKKNIFRLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNL 478
+G+G +K +RLRDW +SRQRYWG PIP++ + +P P+ LPVILPE V + +
Sbjct: 424 TAMGVGERKVNYRLRDWGVSRQRYWGAPIPMVTLEDGTVMPTPDDQLPVILPEDVVMDGI 483
Query: 479 LKENKKFLHVSCPKCNKL-AFRETDTMDTFVDSSWYYMRYISPKLENFMIDDNKINYWMP 537
K + N + A RETDT DTF++SSWYY RY P+ + M+D NYW+P
Sbjct: 484 TSPIKADPEWAKTTVNGMPALRETDTFDTFMESSWYYARYTCPQYKEGMLDSEAANYWLP 543
Query: 538 VDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNK 597
VD YIGGIEHAI+HLLY RF+ KLM + G++ +EP +LL QGM+L +Y + + +
Sbjct: 544 VDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQGMVLADAFYYV-GENGE 602
Query: 598 KRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADS 657
+ W +P D + D+K + + A + ++ G+ KMSKSKNNGIDPQ + YGAD+
Sbjct: 603 RNWVSPVDAIVERDEKGRIVKAKDAAGHE-LVYTGMSKMSKSKNNGIDPQVMVERYGADT 661
Query: 658 TRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFSYILAPRXXXXXXXXXFHNDFSVIK 717
RLF++F++P + LEW + G+EGA RFL RVW Y + +V
Sbjct: 662 VRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVYEHTAKGDVAA--------LNVDA 713
Query: 718 FNNNQKVFRRKIHKILQQINRDIKRIQ-YNTVVSGCMKIFNILERINSEXXXXXXXXXXX 776
NQK RR +HK + ++ DI R Q +NT ++ M++ N L + ++
Sbjct: 714 LTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELMNKLAKAPTDGEQDRA----- 768
Query: 777 XILLYEGMSIFLRVLNPIAPHITHILWKELKYSIQQGDILNACWPKIDSLALXXXXXXVK 836
L+ E + +R+LNP PHI LW+ELK +GDI NA WP D A+ V
Sbjct: 769 --LMQEALLAVVRMLNPFTPHICFTLWQELK---GEGDIDNAPWPVADEKAMVEDSTLV- 822
Query: 837 LIIQINGKFRGHIFVKKKCTTDFIKK 862
++Q+NGK R I V T + +++
Sbjct: 823 -VVQVNGKVRAKITVPVDATEEQVRE 847
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 619 bits (1597), Expect = e-177, Method: Compositional matrix adjust.
Identities = 331/892 (37%), Positives = 502/892 (56%), Gaps = 63/892 (7%)
Query: 3 KKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTIN 62
+KYN IE Q +W + + D GK Y M PYPSG LHMGH++NYT+
Sbjct: 2 EKYNPHAIEAKWQRFWEEKGFMKA--KDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMG 59
Query: 63 DVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGLAI 122
DV+ R+ RM GY VL PMGWDAFG+PAENAA+ P WTY N+ K+ L +G+
Sbjct: 60 DVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILY 119
Query: 123 DWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWR- 181
DW RE+ TC P+YY+WNQWIFLKM+++G+ Y+ G+VNW P +TVLANEQV+ GR WR
Sbjct: 120 DWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRH 179
Query: 182 SDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIGKSKGIFLAFPHN 241
D +EK+++ +Y +IT YAE LL+ ++ WP+KV+ MQ WIG+S+G + FP
Sbjct: 180 EDTPVEKRELEQWYLRITAYAERLLKDLEGL--NWPEKVKAMQRAWIGRSEGAEILFPVE 237
Query: 242 IKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAA----RNNLLLQKFIL 297
K+ ++ +FTTR D ++G TF V++PEHPL + A R +L ++
Sbjct: 238 GKEV----------RIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVL--AYVE 285
Query: 298 EYKKNNNIE--SNNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAAI-GVPAHN 354
K+ IE + K + L+P T + I ++ +YV+ YG AI VPAH+
Sbjct: 286 AAKRKTEIERQAEGREKTGVFLGAYALNPATGERIPIWTADYVL-FGYGTGAIMAVPAHD 344
Query: 355 KHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAI 414
+ D+ FA+K L IK+VI + + + + + +E +NS ++ +E +
Sbjct: 345 QRDYEFARKFGLPIKKVIERPGEPLPEPLERAY---EEPGIMVNSGPFDGTESEEGKRKV 401
Query: 415 STDLIKLGLGNKKNIFRLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILP---- 470
L + GLG + +RLRDW ISRQRYWGTPIP+++C++CG VPVPE++LPV+LP
Sbjct: 402 IAWLEEKGLGKGRVTYRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKD 461
Query: 471 -ETCVP--NNLLKENKKFLHVSCPKCNKLAFRETDTMDTFVDSSWYYMRYISPKLENFMI 527
E P + L+ + +F +CPKC A R+TDTMDTF DSSWYY+RY P +
Sbjct: 462 VEDIRPKGKSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPF 521
Query: 528 DDNKINYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKT 587
D K N WMPVDQYIGG+EHA+LHLLY+RF+TK +++LG++K EPF L TQGM+L T
Sbjct: 522 DPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWT 581
Query: 588 -YYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKL--DKKPVIIGGIE-----KMSKS 639
+ +E + R P +++ + + + + K+ + +P G + MSKS
Sbjct: 582 DFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKS 641
Query: 640 KNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFSYILAPR 699
K NG+ + GAD R+ I+F+APPE + W++ G++GA+RFLNR+ + + R
Sbjct: 642 KGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRI--YRRVAEDR 699
Query: 700 XXXXXXXXXFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIFNIL 759
F + + K+H+ L+++ D++ +++NT ++ M+ N L
Sbjct: 700 EALLETSGVFQAE----ALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNAL 755
Query: 760 ERINSEXXXXXXXXXXXXILLYEGMSIFLRVLNPIAPHITHILWKELKYSIQQGDILNAC 819
+ + + +L++L P APH+ LW + + A
Sbjct: 756 YEYRKDRPVTP--------VYRTAIRYYLQMLFPFAPHLAEELW----HWFWPDSLFEAG 803
Query: 820 WPKIDSLALXXXXXXVKLIIQINGKFRGHIFVKKKCTTDFIKKIVLKNKVIQ 871
WP++D AL V++ +Q+NG+ RG I + K + + LK + ++
Sbjct: 804 WPELDEKAL--EKDVVEVAVQVNGRVRGTIHIPKDAPLEVARAEALKVRNVR 853
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 615 bits (1587), Expect = e-176, Method: Compositional matrix adjust.
Identities = 330/892 (36%), Positives = 500/892 (56%), Gaps = 63/892 (7%)
Query: 3 KKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTIN 62
+KYN IE Q +W + + D GK Y M PYPSG LHMGH++NYT+
Sbjct: 2 EKYNPHAIEAKWQRFWEEKGFMKA--KDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMG 59
Query: 63 DVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGLAI 122
DV+ R+ RM GY VL PMGWDAFG+PAENAA+ P WTY N+ K+ L +G+
Sbjct: 60 DVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILY 119
Query: 123 DWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWR- 181
DW RE+ TC P+YY+WNQWIFLKM+++G+ Y+ G+VNW P +TVLANEQV+ GR WR
Sbjct: 120 DWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRH 179
Query: 182 SDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIGKSKGIFLAFPHN 241
D +EK+++ +Y +IT YAE LL+ ++ WP+KV+ MQ WIG+S+G + FP
Sbjct: 180 EDTPVEKRELEQWYLRITAYAERLLKDLEGL--NWPEKVKAMQRAWIGRSEGAEILFPVE 237
Query: 242 IKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAA----RNNLLLQKFIL 297
K+ ++ +FTTR D ++G TF V++PEHPL + A R +L ++
Sbjct: 238 GKEV----------RIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVL--AYVE 285
Query: 298 EYKKNNNIE--SNNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAAI-GVPAHN 354
K+ IE + K + L+P T + I ++ +YV+ YG AI VPAH+
Sbjct: 286 AAKRKTEIERQAEGREKTGVFLGAYALNPATGERIPIWTADYVL-FGYGTGAIMAVPAHD 344
Query: 355 KHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAI 414
+ D+ FA+K L IK+VI + + + + + +E +NS ++ +E +
Sbjct: 345 QRDYEFARKFGLPIKKVIERPGEPLPEPLERAY---EEPGIMVNSGPFDGTESEEGKRKV 401
Query: 415 STDLIKLGLGNKKNIFRLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILP---- 470
L + GLG + +RLRDW ISRQRYWGTPIP+++C++CG VPVPE++LPV+LP
Sbjct: 402 IAWLEEKGLGKGRVTYRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKD 461
Query: 471 -ETCVP--NNLLKENKKFLHVSCPKCNKLAFRETDTMDTFVDSSWYYMRYISPKLENFMI 527
E P + L+ + +F +CPKC A R+TDTMDTF DSSWYY+RY P +
Sbjct: 462 VEDIRPKGKSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPF 521
Query: 528 DDNKINYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKT 587
D K N WMPVDQYIGG+EHA+LHLLY+RF+TK +++LG++K EPF L TQGM+L T
Sbjct: 522 DPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWT 581
Query: 588 -YYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKL--DKKPVIIGGIE-----KMSKS 639
+ +E + R P +++ + + + + K+ + +P G + MSKS
Sbjct: 582 DFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKS 641
Query: 640 KNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFSYILAPR 699
K NG+ + GAD R+ I+F+APPE + W++ G++GA+RFLNR+ + + R
Sbjct: 642 KGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRI--YRRVAEDR 699
Query: 700 XXXXXXXXXFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIFNIL 759
F + + K+H+ L+++ D++ +++NT ++ M+ N L
Sbjct: 700 EALLETSGVFQAE----ALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNAL 755
Query: 760 ERINSEXXXXXXXXXXXXILLYEGMSIFLRVLNPIAPHITHILWKELKYSIQQGDILNAC 819
+ + + +L++L P APH+ LW + + A
Sbjct: 756 YEYRKDRPVTP--------VYRTAIRYYLQMLFPFAPHLAEELW----HWFWPDSLFEAG 803
Query: 820 WPKIDSLALXXXXXXVKLIIQINGKFRGHIFVKKKCTTDFIKKIVLKNKVIQ 871
WP++D AL V++ +Q+NG G I + K + + LK + ++
Sbjct: 804 WPELDEKAL--EKDVVEVAVQVNGAVAGTIHIPKDAPLEVARAEALKVRNVR 853
>pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
pdb|3ZIU|B Chain B, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
Length = 637
Score = 188 bits (477), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 99/234 (42%), Positives = 139/234 (59%), Gaps = 12/234 (5%)
Query: 5 YNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGK-LHMGHVRNYTIND 63
YN EIEK Q W K A++TT KFY M PYPSG LH+GH YT D
Sbjct: 9 YNHNEIEKKWQTRWEKTKAFKTTNKS----KDKFYALDMFPYPSGSGLHVGHPEGYTATD 64
Query: 64 VMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGLAID 123
++ RY R+ G++VL P+GWDAFG+PAE A+ + P +T N+ ++QL SLG + D
Sbjct: 65 IISRYKRLKGFDVLHPIGWDAFGLPAEQYALSSGKHPQPFTLKNIENFRRQLKSLGFSFD 124
Query: 124 WSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVI-NGRG--- 179
+ +E+ T P YY+W QWIF +++K+G+ + VNW P TVLANE+++ N +G
Sbjct: 125 YEKEVNTTDPSYYRWTQWIFKQIYKKGLAEIREVDVNWCPGLGTVLANEEIVENDKGEMV 184
Query: 180 -WRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIGKSK 232
R + KK + + KITNYA+ LLE + L WP ++ +Q NWIGK +
Sbjct: 185 SERGSFPVYKKPMKQWVLKITNYADRLLEDL--NLLDWPDSLKKLQTNWIGKEE 236
Score = 159 bits (401), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 132/483 (27%), Positives = 221/483 (45%), Gaps = 105/483 (21%)
Query: 374 VKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNKKNIFRLR 433
+K +Y+D++ +D +N + + K TN I + I + K ++L+
Sbjct: 202 LKITNYADRLLED----------LNLLDWPDSLKKLQTNWIGKEEI-----DGKITYKLQ 246
Query: 434 DWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNL----LKENKKFLHVS 489
DW +RQRYWG P P+ Y D +V + ++ + + E +P+ L N ++ V
Sbjct: 247 DWIFARQRYWGEPFPV-YFDEDNNVYLIDELVELPHMENIMPSGTGEGPLATNTEW--VQ 303
Query: 490 CPKCNKLAFRETDTMDTFVDSSWYYMRYISPKLEN-FMIDDNKINY-----WMPVDQYIG 543
K NK+ R+T+TM + S WYY+ YI + + ++ D+K Y W+PVD YIG
Sbjct: 304 YKKNNKIFKRDTNTMPQWAGSCWYYLAYIMKQEDGTYLPIDSKKAYEAFSKWLPVDLYIG 363
Query: 544 GIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNP 603
G EHA+LHLLYARFW K++Y+L ++ EPF +L+ QGMIL K
Sbjct: 364 GQEHAVLHLLYARFWHKILYDLKIVPTKEPFQKLINQGMILGKDG--------------- 408
Query: 604 DDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFII 663
+KMSKS N ++P I +GAD+ R++ +
Sbjct: 409 ------------------------------QKMSKSLGNVVNPDEIIQNFGADTLRVYEM 438
Query: 664 FSAPPEKNLEWSDIGIEGAYRFLNRVWNFSYILAPRXXXXXXXXXFHNDFSVIKFNNNQK 723
F P +W++ +E Y+++ RV I F D S I +
Sbjct: 439 FMGPLTDTKKWNESTVEATYKWILRVKRIFQI-------------FIEDKSKINSLHKDD 485
Query: 724 VFRRKIHKILQQINRDIKRIQYNTVVSGCMKIFNILERINSEXXXXXXXXXXXXILLYEG 783
F + + ++++I +DI+ +++N ++S M N L + I +
Sbjct: 486 QFISEHNLLIKEITQDIEDLKFNIMISKLMIFVNSLYK-------------KEKIYSLKP 532
Query: 784 MSIFLRVLNPIAPHITHILWKELKYSIQQGDILNACWPKIDSLALXXXXXXVKLIIQING 843
+ F + + IAPHI+ +EL S+ + +I+ WP ++ + V IQ+NG
Sbjct: 533 LKDFAIMFSTIAPHIS----EELLESLGEKEIMFQSWPTYENNKILLTKDIV--AIQVNG 586
Query: 844 KFR 846
K R
Sbjct: 587 KLR 589
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 93/198 (46%), Gaps = 27/198 (13%)
Query: 6 NFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVM 65
NF IE+ Q W + ++ D + KFY PY SG LH+GH R YTI DV+
Sbjct: 5 NFKAIEEKWQKRWLEAKIFEPNIRD-KPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVI 63
Query: 66 YRYMRMNGYNVLMPMGWDAFGMPAEN-AAILNNTSPAK---------------WTYDN-- 107
R+ RM GYNVL PM W G P A + N P WT+++
Sbjct: 64 ARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPI 123
Query: 108 --VSYM----KKQLSSLGLAIDWSREIITCS--PKYYKWNQWIFLKMFKRGIIYKKTGIV 159
V Y K+ G ++DWSRE T S P + K+ +W F K+ ++G I K V
Sbjct: 124 NIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRV 183
Query: 160 NWDPIEKTVLANEQVING 177
WDP+ T L + ++ G
Sbjct: 184 RWDPVVGTPLGDHDLMEG 201
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 35/193 (18%), Positives = 79/193 (40%), Gaps = 23/193 (11%)
Query: 634 EKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFS 693
+KMSKSK N ++ I GAD RL+I+ A + + +W + + + R +
Sbjct: 649 QKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELI 708
Query: 694 YILAPRXXXXXXXXXFHNDFSV---IKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVS 750
A ++ V ++ + + +++K +++ ++ + T V
Sbjct: 709 SQFA--------------EYEVKGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQ 754
Query: 751 GCMKIFNILERINSEXXXXXXXXXXXXILLYEGMS-IFLRVLNPIAPHITHILWKELKYS 809
++I+ + + ++ +++R++ P PHI LW++L
Sbjct: 755 WAF--YSIMNDLRWYLRRTEGRDDEAKRYVLRTLADVWVRLMAPFTPHICEELWEKLG-- 810
Query: 810 IQQGDILNACWPK 822
+G + A WP+
Sbjct: 811 -GEGFVSLAKWPE 822
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
Domain Orientation
Length = 810
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 93/198 (46%), Gaps = 27/198 (13%)
Query: 6 NFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVM 65
NF IE+ Q W + ++ D + KFY PY SG LH+GH R YTI DV+
Sbjct: 5 NFKAIEEKWQKRWLEAKIFEPNIRD-KPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVI 63
Query: 66 YRYMRMNGYNVLMPMGWDAFGMPAEN-AAILNNTSPAK---------------WTYDN-- 107
R+ RM GYNVL PM W G P A + N P WT+++
Sbjct: 64 ARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPI 123
Query: 108 --VSYM----KKQLSSLGLAIDWSREIITCS--PKYYKWNQWIFLKMFKRGIIYKKTGIV 159
V Y K+ G ++DWSRE T S P + K+ +W F K+ ++G I K V
Sbjct: 124 NIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRV 183
Query: 160 NWDPIEKTVLANEQVING 177
WDP+ T L + ++ G
Sbjct: 184 RWDPVVGTPLGDHDLMEG 201
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/177 (17%), Positives = 72/177 (40%), Gaps = 20/177 (11%)
Query: 634 EKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFS 693
+KMSKSK N ++ I GAD RL+I+ A + + +W + + + R +
Sbjct: 649 QKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELI 708
Query: 694 YILAPRXXXXXXXXXFHNDFSV---IKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVS 750
A ++ V ++ + + +++K +++ ++ + T V
Sbjct: 709 SQFA--------------EYEVKGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQ 754
Query: 751 GCMKIFNILERINSEXXXXXXXXXXXXILLYEGMS-IFLRVLNPIAPHITHILWKEL 806
++I+ + + ++ +++R++ P PHI LW++L
Sbjct: 755 WAF--YSIMNDLRWYLRRTEGRDDEAKRYVLRTLADVWVRLMAPFTPHICEELWEKL 809
>pdb|2AJG|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase
pdb|2AJG|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase
pdb|2AJH|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Methionine
pdb|2AJH|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Methionine
pdb|2AJI|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Isoleucine
pdb|2AJI|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Isoleucine
Length = 196
Score = 100 bits (249), Expect = 3e-21, Method: Composition-based stats.
Identities = 61/176 (34%), Positives = 92/176 (52%), Gaps = 5/176 (2%)
Query: 254 NGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYKKNNNIESN--NLL 311
+ L ++TTR D G T+ ++ HPLA AA NN L FI E + E+ +
Sbjct: 23 DNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATME 82
Query: 312 KKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAAIGVPAHNKHDFYFAKKHSLLIKQV 371
KK + T K +HPLT +EI V+ N+V+ + A + VP H++ D+ FA K+ L IK V
Sbjct: 83 KKGVDTGFKAVHPLTGEEIPVWAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPV 142
Query: 372 INVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNKK 427
I + S D + E NS ++N + H+ A NAI+ L +G+G +K
Sbjct: 143 ILAADGSEPDLSQQAL---TEKGVLFNSGEFNGLDHEAAFNAIADKLTAMGVGERK 195
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
pdb|1JZS|A Chain A, Isoleucyl-trna Synthetase Complexed With Mupirocin
pdb|1ILE|A Chain A, Isoleucyl-Trna Synthetase
Length = 821
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 183/924 (19%), Positives = 321/924 (34%), Gaps = 212/924 (22%)
Query: 6 NFVEIEKITQCYWNKINAYQ-TTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDV 64
NF ++E+ +W + +Q + EN P Y P +G H+GH + + D+
Sbjct: 9 NFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGP--PTANGLPHVGHAQARSYKDL 66
Query: 65 MYRYMRMNGYNVLMPMGWDAFGMPAE---------------NAAILNNTSPAKWTYDNVS 109
RY M GY GWD G+P E A + + A ++V
Sbjct: 67 FPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQA--CRESVF 124
Query: 110 YMKKQLSS----LGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIE 165
+K+ + + +D T P Y + W +F RG++Y+ +V + P
Sbjct: 125 TYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRC 184
Query: 166 KTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQV 225
T L++ +V G Y +I +
Sbjct: 185 GTPLSSHEVALG-----------------YKEIQD------------------------- 202
Query: 226 NWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFA 285
+++ FP +K+P K ++ L I+TT + G + PE+ A F
Sbjct: 203 ------PSVYVRFP--LKEPKKLG--LEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQ 252
Query: 286 ARNNLLLQKFILEYKKNNNI--ESNNLLKKSILTQLKVL--HPLTNQEIK----VFVVNY 337
+ L ILE + E +LK L+ L P Q ++ V + +Y
Sbjct: 253 VGDEAL----ILEEGLGRKLLGEGTQVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADY 308
Query: 338 VIEKSYGRAAIGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCI 397
V ++ PA D A+ + L + + ++ + K + K Y + N +
Sbjct: 309 VSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEPF-KGLYFREANRAIL 367
Query: 398 NSCKYNNMSHKEATN--------AISTDLIKLGLGN---KKNIFR--------------- 431
+ + KE + ST L+ + K +F+
Sbjct: 368 RDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVPP 427
Query: 432 -------------LRDWAISRQRYWGTPIPIIYCDSC------GSVPVPEKDLPVILPET 472
L DWA+SR RYWGTP+PI C +C GS + LPE
Sbjct: 428 HIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEP 487
Query: 473 CVPNNLLKENKKFLHVSCPKCNKLAFRETDTMDTFVDSSWYYMRYISPKLENFMIDDNKI 532
P+ + + ++C C R +D + DS M + S L +
Sbjct: 488 FDPHRPYVDQ---VELAC-ACGGTMRRVPYVIDVWYDSG--AMPFAS--LHYPFEHEEVF 539
Query: 533 NYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNE-PFIRLLTQGMILNKTYYRI 591
P D GI+ R W ++ LG++ F F ++ G+I
Sbjct: 540 RESFPADFIAEGIDQ-------TRGWFNSLHQLGVMLFGSIAFKNVICHGLI-------- 584
Query: 592 ENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQIN 651
LD+K +KMSKSK N +DP I
Sbjct: 585 ------------------LDEKG-------------------QKMSKSKGNVVDPWDIIR 607
Query: 652 TYGADSTRLFIIFSAPPEKNLEWS-DIGIEGAYRFLNRVWN-FSYILAPRXXXXXXXXXF 709
+GAD+ R +I SAPPE + + ++ E + +WN +S+ +
Sbjct: 608 KFGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTLWNVYSFFVT---YANLDRPDL 664
Query: 710 HNDFSVIKFNNNQKVFRRKIHKILQQINRDIK--------RIQYNTVVSGCMKIFNILER 761
N K + ++ ++Q++ ++ R + VV + + R
Sbjct: 665 KNPPPPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNR 724
Query: 762 INSEXXXXXXXXXXXXILLYEGMSIFLRVLNPIAPHITHILWKELKYSIQ---QGDILNA 818
LYE + + + P P + +LW+ L S++ + + A
Sbjct: 725 RRFWKNEDALDREAAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRSVRLEAKESVHLA 784
Query: 819 CWPKID-SLALXXXXXXVKLIIQI 841
WP+ D +LA ++ ++++
Sbjct: 785 DWPEADPALADEALVAQMRAVLKV 808
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 135/622 (21%), Positives = 225/622 (36%), Gaps = 151/622 (24%)
Query: 45 PYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAK-- 102
PY +G LHMGH N + D + RY M G+ GWD G+P E A K
Sbjct: 57 PYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMS 116
Query: 103 ----------WTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGII 152
+ + + KK LG+ D++ IT P+Y IF +M +G+I
Sbjct: 117 TAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLI 176
Query: 153 YKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKK 212
YK V W P ++ LA ++ EY K
Sbjct: 177 YKGKKPVYWSPSSESSLAEAEI--------------------------------EYHDK- 203
Query: 213 LPYWPKKVRLMQVNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITF 272
+S I++AF N+KD + + K I+TT I
Sbjct: 204 -----------------RSASIYVAF--NVKD--DKGVVDADAKFIIWTTTPWTIPSNVA 242
Query: 273 CVISPEHPLAIFAARNNLLLQKFILEYKKNNNI-ESNNLLKKSI----------LTQLKV 321
+ PE + + N+ +K+I+ ++ + E+ + K SI L +
Sbjct: 243 ITVHPE----LKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIKLEKEYTGKELEWVVA 298
Query: 322 LHPLTNQEIKVFVVNYVIEKSYGRAAIGVPAHNKHDFYFAKKHSLLIKQVINVK------ 375
HP ++E V ++V + P H + D+ +++ L + I+ K
Sbjct: 299 QHPFLDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEE 358
Query: 376 ------------NKSYSDKIWK----------------DWYIDKENCYCINSCKYNNMS- 406
NK+ +D + + DW K + + ++S
Sbjct: 359 GGQFEGMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISK 418
Query: 407 -HKEATNAISTDLIKLGLGNKK--NIFRLR-DWAISRQRYWGTPIPIIYCDSCGSVPVPE 462
++ +AI K+ G + N+ R R +W ISRQR WG P+P+ Y ++ + E
Sbjct: 419 VRQDILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKE 478
Query: 463 K--DLPVILPETCV-------PNNLLKENKKFLHVSCPKCNKLAFRETDTMDTFVDSSWY 513
+ + E +LL E F H P N +ETD MD + DS
Sbjct: 479 TVNHVADLFAEHGSNIWFEREAKDLLPEG--FTHPGSP--NGTFTKETDIMDVWFDSGSS 534
Query: 514 YMRYISPKLE-NFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNE 572
+ + + E +F D Y DQY G +I + R +
Sbjct: 535 HRGVLETRPELSFPAD----MYLEGSDQYRGWFNSSITTSVATRGVS------------- 577
Query: 573 PFIRLLTQGMILNKTYYRIENS 594
P+ LL+ G +++ ++ S
Sbjct: 578 PYKFLLSHGFVMDGEGKKMSKS 599
>pdb|3O0A|A Chain A, Crystal Structure Of The Wild Type Cp1 Hydrolitic Domain
From Aquifex Aeolicus Leucyl-Trna
pdb|3O0A|B Chain B, Crystal Structure Of The Wild Type Cp1 Hydrolitic Domain
From Aquifex Aeolicus Leucyl-Trna
Length = 219
Score = 79.0 bits (193), Expect = 1e-14, Method: Composition-based stats.
Identities = 69/228 (30%), Positives = 112/228 (49%), Gaps = 33/228 (14%)
Query: 229 GKSKGIFLAFPHNIKDPNK---------NNKLIQNGKLWI--FTTRIDIIYGITFCVISP 277
G+S+G + F I++P K L++ +++I FTTR D ++G TF V++P
Sbjct: 1 GRSEGALIRFYVEIEEPEKFLNCVPEELKETLLKEKRIYIDVFTTRPDTVFGATFVVLAP 60
Query: 278 EHPLA-IFAARNNLL-------LQKFILEYKKNNNIE-SNNLLKKSILTQLKVLHPLTNQ 328
EHPL + A L ++ F+ + KK + E + K+ + + +P +
Sbjct: 61 EHPLVPVLACIGERLGNACYSDVENFVEKMKKMSTRERTMEEDKEGVFLGVYATNPANGE 120
Query: 329 EIKVFVVNYVIEKSYGRAAI-GVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIW--- 384
+I V+ NYV+ + YG AI VPAH++ D+ FAKK+ L IK V+ + W
Sbjct: 121 KIPVWSANYVLYE-YGTGAIMCVPAHDQRDWEFAKKYDLPIKVVVK------PEGAWDFE 173
Query: 385 KDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNKKNIFRL 432
K Y K +NS ++ + + A I+ L GLG KK +RL
Sbjct: 174 KGAYEGKGT--LVNSDGFDGLDSETAKRKITEWLQDRGLGEKKVSYRL 219
>pdb|3PZ0|A Chain A, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|B Chain B, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|C Chain C, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|D Chain D, The Crystal Structure Of Aaleurs-Cp1
Length = 221
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 65/221 (29%), Positives = 107/221 (48%), Gaps = 33/221 (14%)
Query: 231 SKGIFLAFPHNIKDPNK---------NNKLIQNGKLWI--FTTRIDIIYGITFCVISPEH 279
++G + F I++P K L++ +++I FTTR D ++G TF V++PEH
Sbjct: 9 AEGALIRFYVEIEEPEKFLNCVPEELKETLLKEKRIYIDVFTTRPDTVFGATFVVLAPEH 68
Query: 280 PLA-IFAARNNLL-------LQKFILEYKKNNNIE-SNNLLKKSILTQLKVLHPLTNQEI 330
PL + A L ++ F+ + KK + E + K+ + + +P ++I
Sbjct: 69 PLVPVLACIGERLGNACYSDVENFVEKMKKMSTRERTMEEDKEGVFLGVYATNPANGEKI 128
Query: 331 KVFVVNYVIEKSYGRAAI-GVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIW---KD 386
V+ NYV+ + YG AI VPAH++ D+ FAKK+ L IK V+ + W K
Sbjct: 129 PVWSANYVLYE-YGTGAIMCVPAHDQRDWEFAKKYDLPIKVVVK------PEGAWDFEKG 181
Query: 387 WYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNKK 427
Y K +NS ++ + + A I+ L GLG KK
Sbjct: 182 AYEGKGT--LVNSDGFDGLDSETAKRKITEWLQDRGLGEKK 220
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
Length = 862
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 116/555 (20%), Positives = 207/555 (37%), Gaps = 149/555 (26%)
Query: 324 PLTNQEIKVFVVNYVIEKSYGRAAIGV-PAHNKHDFYFAKKHSLLIKQVINVKNKSYSDK 382
PLT I + + + +EK +G A+ V PAH+ D+ ++H L VIN++ + ++
Sbjct: 246 PLTEVWIPI-LADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGER 304
Query: 383 I--------------------WKDWYIDKENCYCIN--SCKYNNMSHKEA--------TN 412
+ + ++ KE Y I +C + A
Sbjct: 305 VPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRMR 364
Query: 413 AISTDLIKLGLGNKKNIF--------------RLRDWAISRQRYWGTPIPIIYCDSCGSV 458
++ +++K GL F ++DW ISRQ +WG IP YC+ C +V
Sbjct: 365 PLAEEVLK-GLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDCQAV 423
Query: 459 PVPEKDLPVILPETCVPNNLLKENKKFLHVSCPKCNKLAF-RETDTMDTFVDSSWYYMRY 517
VP P L++ SC C R+ D DT+ S+ + +
Sbjct: 424 NVPR------------PERYLEDP-----TSCEACGSPRLKRDEDVFDTWFSSALWPLST 466
Query: 518 ISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRL 577
+ E +D K Y P D + G + IL L +R + +G PF +
Sbjct: 467 LGWPEET---EDLKAFY--PGDVLVTG--YDILFLWVSRMEVSGYHFMG----ERPFKTV 515
Query: 578 LTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMS 637
L G++ LD+K + KMS
Sbjct: 516 LLHGLV--------------------------LDEKGQ-------------------KMS 530
Query: 638 KSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFS-YIL 696
KSK N IDP + YGAD+ R +I+ A +++ +E A F N+++N + ++L
Sbjct: 531 KSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFANKLYNAARFVL 590
Query: 697 APRXXXXXXXXXFHNDFSVIKFNNNQKVFRRKIHKI--------LQQINRDIKRIQYNTV 748
R D + + R + +I L Q R++ + ++
Sbjct: 591 LSREGFQA-----KEDTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEF 645
Query: 749 VSGCMKIFN-ILERINSEXXXXXXXXXXXXILLYEGMSIFLRVLNPIAPHITHILWKELK 807
++ L+ N+ L E +++ L++L+P+ P +T L++ L
Sbjct: 646 CDWYLEAAKPALKAGNAHTLRT----------LEEVLAVLLKLLHPMMPFLTSELYQAL- 694
Query: 808 YSIQQGDILNACWPK 822
+ ++ WP+
Sbjct: 695 --TGKEELALEAWPE 707
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 18/158 (11%)
Query: 35 NGKFYTCSMLPYP--SGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAE-- 90
+GK +P P +G LHMGH + ++ D + RY RM G+ + G D G+ +
Sbjct: 31 SGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVV 90
Query: 91 -------NAAILNNTSPAK-------WTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYY 136
++ K W ++ + KQL LG + DWSRE T K
Sbjct: 91 VERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRS 150
Query: 137 KWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQV 174
+ ++ F + + G+ Y+ +VNW P +T L++ +V
Sbjct: 151 RAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEV 188
>pdb|3PZ5|A Chain A, The Crystal Structure Of Aaleurs-Cp1-D20
pdb|3PZ5|B Chain B, The Crystal Structure Of Aaleurs-Cp1-D20
Length = 201
Score = 70.5 bits (171), Expect = 4e-12, Method: Composition-based stats.
Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 22/182 (12%)
Query: 259 IFTTRIDIIYGITFCVISPEHPLA-IFAARNNLL-------LQKFILEYKKNNNIE-SNN 309
+FTTR D ++G TF V++PEHPL + A L ++ F+ + KK + E +
Sbjct: 28 VFTTRPDTVFGATFVVLAPEHPLVPVLACIGERLGNACYSDVENFVEKMKKMSTRERTME 87
Query: 310 LLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAAI-GVPAHNKHDFYFAKKHSLLI 368
K+ + + +P ++I V+ NYV+ + YG AI VPAH++ D+ FAKK+ L I
Sbjct: 88 EDKEGVFLGVYATNPANGEKIPVWSANYVLYE-YGTGAIMCVPAHDQRDWEFAKKYDLPI 146
Query: 369 KQVINVKNKSYSDKIW---KDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGLGN 425
K V+ + W K Y K +NS ++ + + A I+ L GLG
Sbjct: 147 KVVVK------PEGAWDFEKGAYEGKGT--LVNSDGFDGLDSETAKRKITEWLQDRGLGE 198
Query: 426 KK 427
KK
Sbjct: 199 KK 200
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|B Chain B, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|C Chain C, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
Length = 536
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 82/194 (42%), Gaps = 18/194 (9%)
Query: 26 TTENDTRFPNG----KFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMG 81
T E T+ P K+Y + + YP+GK H+GH D M R+ R+NG +V G
Sbjct: 11 TLEAQTQGPGSMSREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTG 70
Query: 82 WDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQW 141
D G+ +A +P N S ++ L + D I T ++YK +Q
Sbjct: 71 TDEHGIKMLQSARKEGITPRDLADRNTSAFRRMAEVLNSSND--DYIRTSEERHYKASQA 128
Query: 142 IFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAI--------IEKKKIPM 193
I+ M G IYK G W + E+ R+D + +E +
Sbjct: 129 IWQAMVANGDIYKG-GYAGWYSVRDEAYYGEEETE---VRADGVRYGPQGTPVEWVEEES 184
Query: 194 YYAKITNYAEELLE 207
Y+ +++ Y ++LL+
Sbjct: 185 YFFRLSAYQDKLLD 198
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 634 EKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGI 679
EKMSKS N IDP + YG D R F++ P ++ +S I
Sbjct: 320 EKMSKSVGNVIDPFELVERYGLDQLRYFLMREVPFGQDGSYSHEAI 365
>pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi
Length = 722
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 92/222 (41%), Gaps = 34/222 (15%)
Query: 37 KFYTCSMLPYPSGKLHMGHVRN-YTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAIL 95
++ S LPY +G +H GH+ Y D+ RY+R+ G +V+ G D G P A+
Sbjct: 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALK 62
Query: 96 NNTSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKK 155
SP + + +K ++ D+ T P +YK +Q FLK ++ G + KK
Sbjct: 63 EGRSPREIVDEFHEQIKITFQRAKISFDFFGR--TELPIHYKLSQEFFLKAYENGHLVKK 120
Query: 156 TGIVNWDPIEKTVLANEQVIN------------------GRGWRSDAIIEK--------- 188
+ +K L + VI GR + +I
Sbjct: 121 VTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVCGRPLTPEILINPRCAICGRPI 180
Query: 189 --KKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWI 228
+ YY K+ ++AE L +++K+ W V+ M ++WI
Sbjct: 181 SFRDSAHYYIKMQDFAERLKRWIEKQP--WKPNVKNMVLSWI 220
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|C Chain C, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1M|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
Length = 524
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 73/175 (41%), Gaps = 9/175 (5%)
Query: 38 FYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNN 97
FY + + YP+G H+GH Y D + R+ R++GY+V G D G A
Sbjct: 14 FYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEG 73
Query: 98 TSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTG 157
A+ N ++ L ++ D R I T +Y+ ++ I+ +M G IY
Sbjct: 74 IPAAELARRNSDVFQRLQEKLNISFD--RFIRTSDADHYEASKAIWKRMADAGDIYLD-A 130
Query: 158 IVNWDPI--EKTVLANEQVINGRGWR----SDAIIEKKKIPMYYAKITNYAEELL 206
W I E+ NE G R + A + + Y+ +++ Y + LL
Sbjct: 131 YKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWTEEQTYFFRLSAYTDRLL 185
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 634 EKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEG 681
EKMSKS N +DP ++T+G D R F++ P ++ +++ I G
Sbjct: 309 EKMSKSIGNVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSYNEDAIIG 356
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CSX|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CT8|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
pdb|2CT8|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
Length = 497
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 9/179 (5%)
Query: 37 KFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILN 96
KFY + + Y + H+GH D + RY R+ Y+V G D G+ + A
Sbjct: 6 KFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEEL 65
Query: 97 NTSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKT 156
SP + N KK L I++++ I T P + K+ Q +F + +KRG IY
Sbjct: 66 GISPKELVDRNAERFKKLWEFL--KIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGE 123
Query: 157 GIVNWDPIEKTVLANEQVINGRGWRSDAIIEKK----KIPMYYAKITNYAEELLEYVKK 211
W + +E + + I +KK K P Y+ +++ Y ++LLE +K
Sbjct: 124 -YEGWYCVGCEEFKSEAELAED--HTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEK 179
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 635 KMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRV 689
KMSK+ N +DP + YG D R F++ P ++ ++S I LNR+
Sbjct: 295 KMSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDFSKKAI------LNRI 343
>pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With
Methionyladenylate And Pyrophosphate
Length = 564
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 7/133 (5%)
Query: 26 TTENDTRFPNGK-----FYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPM 80
T E T+ P F+ + + Y + H+GHV + I DV+ RY R+ G V +
Sbjct: 11 TLEAQTQGPGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMT 70
Query: 81 GWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQ 140
G D G AA SP +T S K+ + +++ I T +P + K Q
Sbjct: 71 GTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQCFQEMNYDMNYF--IRTTNPTHEKLVQ 128
Query: 141 WIFLKMFKRGIIY 153
I+ K+ +G IY
Sbjct: 129 DIWKKLAAKGDIY 141
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 38 FYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNN 97
F+ S + Y + H+GHV + I DV+ RY R+ G V G D G AA
Sbjct: 11 FFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQ 70
Query: 98 TSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIY 153
SP +T KK + +ID+ I T + ++ + ++ K+ ++G IY
Sbjct: 71 VSPYDFTTAVAGEFKKXFEQMDYSIDYF--IRTTNEQHKAVVKELWTKLEQKGDIY 124
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 38 FYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNN 97
F+ S + Y + H+GHV + I DV+ RY R+ G V G D G AA
Sbjct: 11 FFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQ 70
Query: 98 TSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIY 153
SP +T KK + +ID+ I T + ++ + ++ K+ ++G IY
Sbjct: 71 VSPYDFTTAVAGEFKKCFEQMDYSIDYF--IRTTNEQHKAVVKELWTKLEQKGDIY 124
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 38 FYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNN 97
F+ S + Y + H+GHV + I DV+ RY R+ G V G D G AA
Sbjct: 11 FFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQ 70
Query: 98 TSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIY 153
SP +T KK + +ID+ I T + ++ + ++ K+ ++G IY
Sbjct: 71 VSPYDFTTAVAGEFKKCFEQMDYSIDYF--IRTTNEQHKAVVKELWTKLEQKGDIY 124
>pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphonate
pdb|1PFU|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphinate
pdb|1PFV|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Difluoromethionine
pdb|1PFW|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Trifluoromethionine
pdb|1PFY|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionyl Sulphamoyl Adenosine
pdb|1PG0|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methioninyl Adenylate
pdb|1PG2|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine And Adenosine
Length = 551
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 4/138 (2%)
Query: 40 TCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTS 99
TC+ LPY +G +H+GH+ + DV RY RM G+ V DA G P A +
Sbjct: 10 TCA-LPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGIT 68
Query: 100 PAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIV 159
P + + + Q G I + T S + + ++ I+ ++ + G I +T
Sbjct: 69 PEQMIGE--MSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQ 126
Query: 160 NWDPIEKTVLANEQVING 177
+DP EK + ++ + G
Sbjct: 127 LYDP-EKGMFLPDRFVKG 143
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Length = 551
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 4/138 (2%)
Query: 40 TCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTS 99
TC+ LPY +G +H+GH+ + DV RY RM G+ V DA G P A +
Sbjct: 10 TCA-LPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGIT 68
Query: 100 PAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIV 159
P + + + Q G I + T S + + ++ I+ ++ + G I +T
Sbjct: 69 PEQMIGE--MSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQ 126
Query: 160 NWDPIEKTVLANEQVING 177
+DP EK + ++ + G
Sbjct: 127 LYDP-EKGMFLPDRFVKG 143
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase
Complexed With Methionine
Length = 551
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 4/138 (2%)
Query: 40 TCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTS 99
TC+ LPY +G +H+GH+ + DV RY RM G+ V DA G P A +
Sbjct: 11 TCA-LPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGIT 69
Query: 100 PAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIV 159
P + + + Q G I + T S + + ++ I+ ++ + G I +T
Sbjct: 70 PEQMIGE--MSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQ 127
Query: 160 NWDPIEKTVLANEQVING 177
+DP EK + ++ + G
Sbjct: 128 LYDP-EKGMFLPDRFVKG 144
>pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2
Length = 547
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 4/138 (2%)
Query: 40 TCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTS 99
TC+ LPY +G +H+GH+ + DV RY RM G+ V DA G P A +
Sbjct: 10 TCA-LPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGIT 68
Query: 100 PAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIV 159
P + + + Q G I + T S + + ++ I+ ++ + G I +T
Sbjct: 69 PEQMIGE--MSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQ 126
Query: 160 NWDPIEKTVLANEQVING 177
+DP EK + ++ + G
Sbjct: 127 LYDP-EKGMFLPDRFVKG 143
>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f
Mutant From Thermus Thermophilus
pdb|2D5B|A Chain A, Crystal Structure Of Thermus Thermophilus Methionyl Trna
Synthetase Y225f Mutant Obtained In The Presence Of
Peg6000
Length = 500
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 79/180 (43%), Gaps = 14/180 (7%)
Query: 38 FYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNN 97
FY + + Y + + H+GH + D + R+ R++GY G D G AA
Sbjct: 5 FYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAG 64
Query: 98 TSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIY--KK 155
P + K+ LG+A D I T ++ K Q + K+++ G IY +
Sbjct: 65 EDPKAFVDRVSGRFKRAWDLLGIAYD--DFIRTTEERHKKVVQLVLKKVYEAGDIYYGEY 122
Query: 156 TGI--VNWDPI--EKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKK 211
G+ V+ + EK ++ I+GR +E++K Y+ ++ Y L EY+++
Sbjct: 123 EGLYCVSCERFYTEKELVEGLCPIHGR------PVERRKEGNYFFRMEKYRPWLQEYIQE 176
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 635 KMSKSKNNGIDPQTQINTYGADSTRLFIIFSAP 667
KMSK+ N +DP + YG D+ R +++ P
Sbjct: 297 KMSKTLGNVVDPFALLEKYGRDALRYYLLREIP 329
>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus
Length = 500
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 79/180 (43%), Gaps = 14/180 (7%)
Query: 38 FYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNN 97
FY + + Y + + H+GH + D + R+ R++GY G D G AA
Sbjct: 5 FYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAG 64
Query: 98 TSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIY--KK 155
P + K+ LG+A D I T ++ K Q + K+++ G IY +
Sbjct: 65 EDPKAFVDRVSGRFKRAWDLLGIAYD--DFIRTTEERHKKVVQLVLKKVYEAGDIYYGEY 122
Query: 156 TGI--VNWDPI--EKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKK 211
G+ V+ + EK ++ I+GR +E++K Y+ ++ Y L EY+++
Sbjct: 123 EGLYCVSCERFYTEKELVEGLCPIHGR------PVERRKEGNYFFRMEKYRPWLQEYIQE 176
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 635 KMSKSKNNGIDPQTQINTYGADSTRLFIIFSAP 667
KMSK+ N +DP + YG D+ R +++ P
Sbjct: 297 KMSKTLGNVVDPFALLEKYGRDALRYYLLREIP 329
>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a
Mutant From Thermus Thermophilus
Length = 502
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 79/180 (43%), Gaps = 14/180 (7%)
Query: 38 FYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNN 97
FY + + Y + + H+GH + D + R+ R++GY G D G AA
Sbjct: 5 FYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAG 64
Query: 98 TSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIY--KK 155
P + K+ LG+A D I T ++ K Q + K+++ G IY +
Sbjct: 65 EDPKAFVDRVSGRFKRAWDLLGIAYD--DFIRTTEERHKKVVQLVLKKVYEAGDIYYGEY 122
Query: 156 TGI--VNWDPI--EKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKK 211
G+ V+ + EK ++ I+GR +E++K Y+ ++ Y L EY+++
Sbjct: 123 EGLYCVSCERFYTEKELVEGLCPIHGR------PVERRKEGNYFFRMEKYRPWLQEYIQE 176
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 635 KMSKSKNNGIDPQTQINTYGADSTRLFIIFSAP 667
KMSK+ N +DP + YG D+ R +++ P
Sbjct: 297 KMSKTLGNVVDPFALLEKYGRDALRYYLLREIP 329
>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With
Modified Specificity
pdb|3H99|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Methionine
pdb|3H9B|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Azidonorleucine
Length = 560
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 4/138 (2%)
Query: 40 TCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTS 99
TC+ PY +G +H+GH+ + DV RY RM G+ V DA G P A +
Sbjct: 23 TCAS-PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGIT 81
Query: 100 PAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIV 159
P + + + Q G I + T S + + ++ I+ ++ + G I +T
Sbjct: 82 PEQMIGE--MSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQ 139
Query: 160 NWDPIEKTVLANEQVING 177
+DP EK + ++ + G
Sbjct: 140 LYDP-EKGMFLPDRFVKG 156
>pdb|2ZUE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg) And An Atp Analog
(Anp)
pdb|2ZUF|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg)
Length = 629
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 47 PSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGM 87
P+ LHMGH RN + DVM R +R GY V + D G+
Sbjct: 130 PTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGI 170
>pdb|3TQO|A Chain A, Structure Of The Cysteinyl-Trna Synthetase (Cyss) From
Coxiella Burnetii
Length = 462
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 37 KFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNV 76
K Y C Y H+GH R++ I D + RY+R GY V
Sbjct: 27 KLYVCGXTVYDY--XHIGHGRSWIIFDXVVRYLRXRGYEV 64
>pdb|3FNR|A Chain A, Crystal Structure Of Putative Arginyl T-Rna Synthetase
From Campylobacter Jejuni
Length = 464
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 13 ITQCYWNKINAYQTTENDTRFPNGKFYTCS-MLPY----PSGKLHMGHVRNYTINDVMYR 67
+++ + N++ A Q N F G+ S +L Y P+G LH+GH R D + R
Sbjct: 3 LSKTFLNEL-ANQALTNPNDFTKGEKKQESFLLEYVSANPTGPLHIGHARGAVFGDTLTR 61
Query: 68 YMRMNGY 74
R GY
Sbjct: 62 LARHLGY 68
>pdb|1WK9|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination
By The Valyl-Trna Synthetase Editing Domain
Length = 146
Score = 33.1 bits (74), Expect = 0.63, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 324 PLTNQEIKVFVVNYVIEKSYGRAAIGV-PAHNKHDFYFAKKHSLLIKQVINVKNKSYSDK 382
PLT I + + + +EK +G A+ V PAH+ D+ ++H L VIN++ + ++
Sbjct: 55 PLTEVWIPI-LADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGER 113
Query: 383 I 383
+
Sbjct: 114 V 114
>pdb|1WKA|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination
By The Valyl-Trna Synthetase Editing Domain
Length = 147
Score = 33.1 bits (74), Expect = 0.63, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 324 PLTNQEIKVFVVNYVIEKSYGRAAIGV-PAHNKHDFYFAKKHSLLIKQVINVKNKSYSDK 382
PLT I + + + +EK +G A+ V PAH+ D+ ++H L VIN++ + ++
Sbjct: 55 PLTEVWIPI-LADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGER 113
Query: 383 I 383
+
Sbjct: 114 V 114
>pdb|3SP1|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss)
From Borrelia Burgdorferi
pdb|3SP1|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss)
From Borrelia Burgdorferi
Length = 501
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 31 TRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPM 80
T F N K Y C P H+G+ R Y D++ + +R GY V M
Sbjct: 38 TNFENVKVYACG--PTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAM 85
>pdb|1IQ0|A Chain A, Thermus Thermophilus Arginyl-Trna Synthetase
Length = 592
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 47 PSGKLHMGHVRNYTINDVMYRYMRMNGYNVLM 78
P+ +LH+GH+RN + D + R + G VL+
Sbjct: 114 PNKELHVGHLRNIALGDAIARILAYAGREVLV 145
>pdb|3RPT|X Chain X, Crystal Structure Of The Anti-Hiv B12 Scaffold Protein
pdb|3RPT|A Chain A, Crystal Structure Of The Anti-Hiv B12 Scaffold Protein
Length = 282
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 18/64 (28%)
Query: 81 GWDAFGMPAENAAILN-------------NTSPAKWTYDNVSYMKKQLSSLG-----LAI 122
G A+ PA+ AA L NTS +WT D V+Y K LS++G I
Sbjct: 146 GHSAWHSPAQMAAALQRADISNSAHGIATNTSNYRWTADEVAYAKAVLSAIGNPSLRAVI 205
Query: 123 DWSR 126
D SR
Sbjct: 206 DTSR 209
>pdb|3RU8|X Chain X, Structure Of An Hiv Epitope Scaffold In Complex With
Neutralizing Antibody B12 Fab
Length = 282
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 18/64 (28%)
Query: 81 GWDAFGMPAENAAILN-------------NTSPAKWTYDNVSYMKKQLSSLG-----LAI 122
G A+ PA+ AA L NTS +WT D V+Y K LS++G I
Sbjct: 146 GHSAWHSPAQMAAALQRADISNSAHGIATNTSNYRWTADEVAYAKAVLSAIGNPSLRAVI 205
Query: 123 DWSR 126
D SR
Sbjct: 206 DTSR 209
>pdb|2BOE|X Chain X, Catalytic Domain Of Endo-1,4-Glucanase Cel6a Mutant Y73s
From Thermobifida Fusca
pdb|2BOF|X Chain X, Catalytic Domain Of Endo-1,4-Glucanase Cel6a Mutant Y73s
From Thermobifida Fusca In Complex With Cellotetrose
pdb|2BOG|X Chain X, Catalytic Domain Of Endo-1,4-Glucanase Cel6a Mutant Y73s
From Thermobifida Fusca In Complex With Methyl
Cellobiosyl- 4-Thio-Beta-Cellobioside
Length = 286
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 93 AILNNTSPAKWTYDNVSYMKKQLSSLG-----LAIDWSR 126
I NTS +WT D V+Y K LS++G ID SR
Sbjct: 183 GIATNTSNYRWTADEVAYAKAVLSAIGNPSLRAVIDTSR 221
>pdb|2BOD|X Chain X, Catalytic Domain Of Endo-1,4-Glucanase Cel6a From
Thermobifida Fusca In Complex With Methyl Cellobiosyl-4-
Thio-Beta-Cellobioside
pdb|1TML|A Chain A, Crystal Structure Of The Catalytic Domain Of A
Thermophilic Endocellulase
Length = 286
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 93 AILNNTSPAKWTYDNVSYMKKQLSSLG-----LAIDWSR 126
I NTS +WT D V+Y K LS++G ID SR
Sbjct: 183 GIATNTSNYRWTADEVAYAKAVLSAIGNPSLRAVIDTSR 221
>pdb|1LI5|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI5|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI7|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1LI7|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1U0B|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase Binary
Complex With Trnacys
Length = 461
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 38 FYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNV 76
Y C + Y H+GH R + DV+ RY+R GY +
Sbjct: 25 MYVCGITVYD--LCHIGHGRTFVAFDVVARYLRFLGYKL 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,600,398
Number of Sequences: 62578
Number of extensions: 1149284
Number of successful extensions: 2517
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2393
Number of HSP's gapped (non-prelim): 79
length of query: 893
length of database: 14,973,337
effective HSP length: 108
effective length of query: 785
effective length of database: 8,214,913
effective search space: 6448706705
effective search space used: 6448706705
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)