Query psy2890
Match_columns 893
No_of_seqs 332 out of 2739
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 20:14:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2890.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2890hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02563 aminoacyl-tRNA ligase 100.0 1E-188 2E-193 1702.1 72.1 848 1-893 76-956 (963)
2 TIGR00396 leuS_bact leucyl-tRN 100.0 5E-186 1E-190 1680.2 73.0 831 5-893 1-841 (842)
3 KOG0435|consensus 100.0 4E-182 9E-187 1486.2 46.5 822 7-893 32-866 (876)
4 PRK00390 leuS leucyl-tRNA synt 100.0 3E-177 7E-182 1601.5 73.0 797 1-893 1-804 (805)
5 COG0495 LeuS Leucyl-tRNA synth 100.0 2E-176 5E-181 1537.8 63.4 801 1-893 1-814 (814)
6 COG0525 ValS Valyl-tRNA synthe 100.0 1E-143 3E-148 1253.8 59.7 657 1-854 1-746 (877)
7 PRK06039 ileS isoleucyl-tRNA s 100.0 8E-133 2E-137 1235.8 59.1 706 1-854 7-822 (975)
8 PTZ00419 valyl-tRNA synthetase 100.0 1E-130 2E-135 1222.8 61.6 699 1-854 24-856 (995)
9 PRK05743 ileS isoleucyl-tRNA s 100.0 6E-131 1E-135 1210.4 50.1 696 3-844 17-806 (912)
10 PLN02381 valyl-tRNA synthetase 100.0 2E-129 4E-134 1203.2 59.6 685 1-854 96-926 (1066)
11 COG0060 IleS Isoleucyl-tRNA sy 100.0 3E-131 7E-136 1164.5 40.3 684 4-828 17-800 (933)
12 PRK13208 valS valyl-tRNA synth 100.0 8E-128 2E-132 1177.9 62.3 660 1-854 6-752 (800)
13 PRK14900 valS valyl-tRNA synth 100.0 8E-128 2E-132 1191.2 62.5 657 1-854 15-767 (1052)
14 PTZ00427 isoleucine-tRNA ligas 100.0 6E-128 1E-132 1189.2 58.7 725 2-854 69-980 (1205)
15 PLN02943 aminoacyl-tRNA ligase 100.0 2E-127 4E-132 1180.6 60.4 656 1-854 57-818 (958)
16 TIGR00422 valS valyl-tRNA synt 100.0 4E-127 9E-132 1179.9 60.7 657 1-854 1-748 (861)
17 PRK05729 valS valyl-tRNA synth 100.0 5E-127 1E-131 1178.1 60.7 651 1-854 5-742 (874)
18 TIGR00392 ileS isoleucyl-tRNA 100.0 1E-127 3E-132 1185.4 56.3 721 1-854 2-841 (861)
19 PLN02882 aminoacyl-tRNA ligase 100.0 5E-126 1E-130 1177.9 60.4 714 3-854 6-853 (1159)
20 PRK13804 ileS isoleucyl-tRNA s 100.0 5E-125 1E-129 1159.3 55.5 689 3-829 22-828 (961)
21 PLN02843 isoleucyl-tRNA synthe 100.0 1E-120 2E-125 1120.4 55.1 684 4-827 2-819 (974)
22 KOG0432|consensus 100.0 4E-118 8E-123 1009.3 46.2 686 1-853 42-859 (995)
23 TIGR00395 leuS_arch leucyl-tRN 100.0 3E-114 6E-119 1065.3 52.3 692 9-852 2-820 (938)
24 PLN02959 aminoacyl-tRNA ligase 100.0 1E-112 2E-117 1057.3 53.2 687 2-824 10-893 (1084)
25 PRK12300 leuS leucyl-tRNA synt 100.0 3E-108 8E-113 1007.1 46.1 638 51-842 1-764 (897)
26 PF00133 tRNA-synt_1: tRNA syn 100.0 6E-110 1E-114 988.0 28.9 519 13-675 1-601 (601)
27 KOG0433|consensus 100.0 5E-104 1E-108 876.4 36.3 682 4-829 29-816 (937)
28 KOG0434|consensus 100.0 1E-100 3E-105 839.8 37.3 745 3-886 6-882 (1070)
29 PRK12267 methionyl-tRNA synthe 100.0 9.4E-80 2E-84 738.6 42.2 458 35-808 3-478 (648)
30 PRK12268 methionyl-tRNA synthe 100.0 4.8E-78 1E-82 714.9 37.5 473 36-823 3-521 (556)
31 PLN02224 methionine-tRNA ligas 100.0 8.7E-77 1.9E-81 694.3 41.6 462 35-808 68-546 (616)
32 TIGR00398 metG methionyl-tRNA 100.0 1.5E-76 3.2E-81 698.3 42.5 455 38-808 1-503 (530)
33 cd00817 ValRS_core catalytic c 100.0 2.4E-77 5.3E-82 673.0 28.9 362 36-674 1-382 (382)
34 PRK00133 metG methionyl-tRNA s 100.0 1.1E-75 2.3E-80 703.8 42.0 456 36-808 2-503 (673)
35 PLN02610 probable methionyl-tR 100.0 5.3E-75 1.1E-79 698.3 42.4 463 34-808 15-532 (801)
36 PRK11893 methionyl-tRNA synthe 100.0 6E-75 1.3E-79 684.0 41.5 461 36-808 1-476 (511)
37 COG0143 MetG Methionyl-tRNA sy 100.0 1.3E-73 2.8E-78 652.2 41.3 459 35-808 4-512 (558)
38 cd00818 IleRS_core catalytic c 100.0 1.4E-66 2.9E-71 576.5 27.9 320 36-674 1-338 (338)
39 KOG0437|consensus 100.0 2.1E-66 4.5E-71 574.6 24.5 679 7-826 14-885 (1080)
40 KOG0436|consensus 100.0 1.2E-64 2.6E-69 531.8 32.7 465 35-809 38-528 (578)
41 cd00812 LeuRS_core catalytic c 100.0 7.4E-60 1.6E-64 518.4 26.7 305 37-675 1-313 (314)
42 PF09334 tRNA-synt_1g: tRNA sy 100.0 5.4E-60 1.2E-64 531.0 24.5 339 38-683 1-375 (391)
43 cd00814 MetRS_core catalytic c 100.0 2.4E-59 5.2E-64 516.3 28.8 315 37-674 1-319 (319)
44 cd00668 Ile_Leu_Val_MetRS_core 100.0 2.3E-59 5.1E-64 515.9 27.8 298 37-674 1-312 (312)
45 KOG1247|consensus 100.0 3.5E-47 7.6E-52 399.4 26.2 465 35-808 13-520 (567)
46 PRK00260 cysS cysteinyl-tRNA s 100.0 5.3E-45 1.2E-49 419.3 26.8 350 35-764 23-375 (463)
47 TIGR00435 cysS cysteinyl-tRNA 100.0 1E-41 2.2E-46 391.0 26.1 127 35-166 21-148 (465)
48 PTZ00399 cysteinyl-tRNA-synthe 100.0 4.9E-41 1.1E-45 396.5 28.6 369 36-764 61-437 (651)
49 PRK12418 cysteinyl-tRNA synthe 100.0 2.1E-41 4.5E-46 373.9 21.1 125 35-165 9-138 (384)
50 TIGR03447 mycothiol_MshC cyste 100.0 2.4E-41 5.3E-46 374.6 20.3 125 35-165 36-165 (411)
51 PRK14535 cysS cysteinyl-tRNA s 100.0 7E-40 1.5E-44 375.4 26.2 125 38-165 249-374 (699)
52 PLN02946 cysteine-tRNA ligase 100.0 3.4E-40 7.3E-45 377.6 22.8 359 37-763 82-442 (557)
53 PF13603 tRNA-synt_1_2: Leucyl 100.0 7.5E-40 1.6E-44 325.5 14.9 181 225-419 1-185 (185)
54 PRK14536 cysS cysteinyl-tRNA s 100.0 1.1E-38 2.4E-43 362.0 26.0 124 38-164 24-157 (490)
55 PRK14534 cysS cysteinyl-tRNA s 100.0 4.9E-37 1.1E-41 346.6 24.9 125 38-165 22-156 (481)
56 COG0215 CysS Cysteinyl-tRNA sy 100.0 6.2E-36 1.3E-40 329.6 22.7 347 38-762 23-374 (464)
57 PF01406 tRNA-synt_1e: tRNA sy 100.0 8.2E-33 1.8E-37 291.4 8.1 124 38-164 9-133 (300)
58 KOG2007|consensus 100.0 5.8E-30 1.3E-34 276.9 28.1 362 38-765 56-426 (586)
59 cd00672 CysRS_core catalytic c 100.0 8.9E-31 1.9E-35 269.8 13.8 92 35-130 20-112 (213)
60 PRK01611 argS arginyl-tRNA syn 100.0 7.8E-28 1.7E-32 281.1 30.0 125 35-161 110-235 (507)
61 cd00674 LysRS_core_class_I cat 99.9 1.3E-26 2.7E-31 254.3 20.0 117 35-155 18-152 (353)
62 PRK00750 lysK lysyl-tRNA synth 99.9 5.7E-23 1.2E-27 238.3 16.7 115 36-154 23-157 (510)
63 TIGR00456 argS arginyl-tRNA sy 99.9 3.5E-20 7.6E-25 219.2 31.4 194 540-795 331-562 (566)
64 cd07961 Anticodon_Ia_Ile_ABEc 99.8 1.6E-20 3.5E-25 191.1 16.3 172 674-846 1-183 (183)
65 TIGR00467 lysS_arch lysyl-tRNA 99.8 1.1E-18 2.4E-23 200.9 13.6 86 36-123 18-121 (515)
66 COG0018 ArgS Arginyl-tRNA synt 99.8 4.2E-16 9.1E-21 181.4 32.2 143 7-154 90-286 (577)
67 cd07960 Anticodon_Ia_Ile_BEm A 99.8 2E-17 4.2E-22 168.0 17.8 166 674-842 1-176 (180)
68 cd00671 ArgRS_core catalytic c 99.7 5.1E-18 1.1E-22 176.4 12.0 124 38-166 2-125 (212)
69 PRK12451 arginyl-tRNA syntheta 99.7 2E-15 4.3E-20 178.3 32.3 149 634-793 370-556 (562)
70 PLN02286 arginine-tRNA ligase 99.6 1.6E-13 3.5E-18 162.2 33.5 152 634-795 377-572 (576)
71 PF08264 Anticodon_1: Anticodo 99.6 1.5E-15 3.2E-20 149.9 12.1 133 722-855 1-147 (153)
72 cd07959 Anticodon_Ia_Leu_AEc A 99.6 3.8E-15 8.2E-20 139.9 13.3 116 674-806 1-117 (117)
73 cd07958 Anticodon_Ia_Leu_BEm A 99.6 4.7E-15 1E-19 139.2 13.2 117 674-806 1-117 (117)
74 cd07962 Anticodon_Ia_Val Antic 99.5 1.8E-13 3.9E-18 132.1 12.2 128 674-806 1-135 (135)
75 PF00750 tRNA-synt_1d: tRNA sy 99.4 2.1E-12 4.6E-17 144.4 17.1 120 35-156 19-194 (354)
76 cd00802 class_I_aaRS_core cata 99.4 6.8E-13 1.5E-17 129.4 8.7 77 40-116 1-77 (143)
77 cd07957 Anticodon_Ia_Met Antic 99.4 4.6E-12 1E-16 121.0 12.7 120 676-806 3-129 (129)
78 PF01921 tRNA-synt_1f: tRNA sy 99.0 2.1E-09 4.5E-14 117.4 10.3 85 37-123 23-127 (360)
79 cd07375 Anticodon_Ia_like Anti 98.9 7.1E-09 1.5E-13 96.7 10.8 114 676-795 1-117 (117)
80 COG1384 LysS Lysyl-tRNA synthe 98.8 1.4E-07 3.1E-12 105.9 16.3 87 37-123 19-124 (521)
81 cd09287 GluRS_non_core catalyt 98.5 2.6E-07 5.6E-12 96.4 6.9 95 40-154 3-97 (240)
82 PRK04156 gltX glutamyl-tRNA sy 98.1 4.9E-06 1.1E-10 97.1 8.4 96 38-153 101-196 (567)
83 TIGR00463 gltX_arch glutamyl-t 98.1 1.1E-05 2.3E-10 94.1 9.3 95 37-153 92-186 (560)
84 TIGR03838 queuosine_YadB gluta 98.0 9.3E-06 2E-10 86.9 6.9 90 43-153 5-94 (272)
85 PRK12558 glutamyl-tRNA synthet 97.9 2.1E-05 4.6E-10 89.6 8.1 92 40-153 4-95 (445)
86 PTZ00402 glutamyl-tRNA synthet 97.9 3.6E-05 7.9E-10 89.8 9.4 95 38-153 52-146 (601)
87 TIGR00440 glnS glutaminyl-tRNA 97.9 2.1E-05 4.6E-10 90.8 7.4 93 41-154 3-95 (522)
88 PLN02907 glutamate-tRNA ligase 97.9 3.3E-05 7.2E-10 93.5 8.9 96 37-154 212-307 (722)
89 PLN03233 putative glutamate-tR 97.8 3.4E-05 7.3E-10 89.1 8.1 95 38-154 11-105 (523)
90 cd00807 GlnRS_core catalytic c 97.8 4.6E-05 9.9E-10 79.5 8.1 93 40-154 3-95 (238)
91 PF00749 tRNA-synt_1c: tRNA sy 97.8 2.3E-05 5.1E-10 86.3 6.3 92 41-153 4-95 (314)
92 PRK05347 glutaminyl-tRNA synth 97.8 4.5E-05 9.7E-10 88.4 8.3 95 38-153 29-123 (554)
93 PTZ00437 glutaminyl-tRNA synth 97.8 5.1E-05 1.1E-09 87.8 8.6 93 39-153 52-144 (574)
94 COG0008 GlnS Glutamyl- and glu 97.8 4.8E-05 1E-09 87.3 8.0 94 39-153 10-103 (472)
95 PRK14703 glutaminyl-tRNA synth 97.8 5.2E-05 1.1E-09 91.6 8.0 95 38-153 31-125 (771)
96 PRK05710 glutamyl-Q tRNA(Asp) 97.7 7.2E-05 1.6E-09 81.1 7.8 93 39-153 6-99 (299)
97 PRK12410 glutamylglutaminyl-tR 97.7 7.7E-05 1.7E-09 84.7 7.3 88 44-153 5-92 (433)
98 TIGR00464 gltX_bact glutamyl-t 97.6 8.7E-05 1.9E-09 86.2 7.2 92 41-153 4-95 (470)
99 cd00418 GlxRS_core catalytic c 97.6 9.9E-05 2.1E-09 77.0 6.8 89 40-150 3-92 (230)
100 PRK01406 gltX glutamyl-tRNA sy 97.6 0.00012 2.6E-09 85.1 7.0 95 39-153 5-105 (476)
101 PRK14895 gltX glutamyl-tRNA sy 97.6 0.00016 3.5E-09 83.5 7.9 94 39-153 5-98 (513)
102 PLN02859 glutamine-tRNA ligase 97.5 0.00027 5.9E-09 84.7 8.7 93 39-153 265-357 (788)
103 PLN02627 glutamyl-tRNA synthet 97.4 0.00029 6.3E-09 81.6 7.0 95 39-153 46-147 (535)
104 cd00808 GluRS_core catalytic c 97.1 0.0011 2.4E-08 69.8 7.6 89 40-150 3-100 (239)
105 KOG4426|consensus 97.1 0.0027 6E-08 69.5 10.4 131 35-170 187-370 (656)
106 KOG1147|consensus 97.0 0.0019 4.1E-08 72.6 7.9 99 38-158 200-298 (712)
107 KOG1195|consensus 96.5 0.026 5.6E-07 63.7 12.3 147 10-162 87-285 (567)
108 TIGR00422 valS valyl-tRNA synt 96.1 0.0082 1.8E-07 75.7 6.3 80 136-229 314-394 (861)
109 PRK14900 valS valyl-tRNA synth 96.0 0.0094 2E-07 76.2 6.8 81 135-229 330-411 (1052)
110 PRK06039 ileS isoleucyl-tRNA s 96.0 0.0073 1.6E-07 76.9 5.3 80 135-229 361-441 (975)
111 cd07956 Anticodon_Ia_Arg Antic 95.8 0.18 3.9E-06 49.7 13.5 109 652-768 2-119 (156)
112 PRK05729 valS valyl-tRNA synth 95.8 0.016 3.4E-07 73.2 7.2 80 136-229 316-396 (874)
113 PRK13208 valS valyl-tRNA synth 95.7 0.015 3.2E-07 72.8 6.6 79 136-229 314-392 (800)
114 KOG1148|consensus 95.6 0.029 6.2E-07 64.2 7.5 94 38-153 248-341 (764)
115 TIGR00392 ileS isoleucyl-tRNA 95.5 0.018 3.9E-07 72.7 5.9 78 137-229 381-458 (861)
116 PLN02882 aminoacyl-tRNA ligase 95.0 0.027 5.9E-07 72.5 5.4 80 135-230 382-463 (1159)
117 PLN02943 aminoacyl-tRNA ligase 94.7 0.047 1E-06 69.3 6.6 80 136-229 366-446 (958)
118 PTZ00427 isoleucine-tRNA ligas 94.7 0.04 8.7E-07 70.9 5.9 80 136-230 487-567 (1205)
119 PRK05743 ileS isoleucyl-tRNA s 94.6 0.049 1.1E-06 68.9 6.5 80 135-229 368-449 (912)
120 PTZ00419 valyl-tRNA synthetase 94.4 0.071 1.5E-06 68.3 7.2 82 135-230 359-441 (995)
121 COG0060 IleS Isoleucyl-tRNA sy 94.4 0.068 1.5E-06 66.1 6.6 79 137-230 375-453 (933)
122 PF00133 tRNA-synt_1: tRNA syn 94.3 0.053 1.1E-06 65.6 5.4 80 135-229 333-412 (601)
123 PRK13804 ileS isoleucyl-tRNA s 93.8 0.088 1.9E-06 66.9 6.4 80 136-230 400-486 (961)
124 TIGR00395 leuS_arch leucyl-tRN 93.7 0.29 6.2E-06 62.3 10.6 164 46-229 300-482 (938)
125 cd00395 Tyr_Trp_RS_core cataly 93.5 0.11 2.3E-06 56.4 5.4 68 47-120 8-79 (273)
126 PLN02843 isoleucyl-tRNA synthe 93.4 0.12 2.5E-06 65.9 6.3 79 137-230 387-465 (974)
127 KOG1149|consensus 93.0 0.22 4.8E-06 55.4 6.8 93 44-154 39-136 (524)
128 PF00579 tRNA-synt_1b: tRNA sy 92.8 0.15 3.3E-06 55.9 5.5 42 35-81 3-44 (292)
129 cd00805 TyrRS_core catalytic c 92.8 0.14 3.1E-06 55.4 5.0 71 46-121 8-81 (269)
130 PRK04156 gltX glutamyl-tRNA sy 92.6 0.14 2.9E-06 60.6 4.9 51 634-684 337-403 (567)
131 PLN02381 valyl-tRNA synthetase 91.9 0.25 5.3E-06 63.5 6.4 82 135-230 426-511 (1066)
132 COG0525 ValS Valyl-tRNA synthe 91.8 0.33 7.2E-06 59.6 7.0 176 37-230 194-395 (877)
133 PRK12282 tryptophanyl-tRNA syn 91.7 3.3 7E-05 46.3 14.2 26 634-664 195-220 (333)
134 cd00802 class_I_aaRS_core cata 91.0 0.36 7.7E-06 46.8 5.1 40 538-585 94-133 (143)
135 PRK12300 leuS leucyl-tRNA synt 90.7 0.45 9.8E-06 60.3 7.0 79 135-229 354-435 (897)
136 PRK08560 tyrosyl-tRNA syntheta 90.2 0.34 7.4E-06 54.0 4.7 21 536-557 167-187 (329)
137 PRK13354 tyrosyl-tRNA syntheta 89.8 0.29 6.3E-06 56.1 3.9 77 35-117 31-110 (410)
138 PRK12285 tryptophanyl-tRNA syn 89.8 1.7 3.7E-05 49.1 9.9 76 35-123 64-139 (368)
139 PRK05912 tyrosyl-tRNA syntheta 89.4 0.31 6.7E-06 55.9 3.7 77 36-120 32-112 (408)
140 PRK12556 tryptophanyl-tRNA syn 89.2 0.57 1.2E-05 52.2 5.5 72 40-123 6-77 (332)
141 PLN02486 aminoacyl-tRNA ligase 88.4 2.8 6E-05 47.6 10.3 77 35-123 71-148 (383)
142 TIGR00233 trpS tryptophanyl-tR 88.3 6.7 0.00015 43.7 13.2 43 634-681 191-235 (328)
143 PLN02959 aminoacyl-tRNA ligase 87.3 0.91 2E-05 58.6 6.3 77 136-229 494-572 (1084)
144 COG1656 Uncharacterized conser 87.2 0.88 1.9E-05 44.5 4.6 106 65-186 18-140 (165)
145 cd00418 GlxRS_core catalytic c 86.9 2.8 6E-05 44.1 8.6 33 634-667 152-185 (230)
146 PRK12284 tryptophanyl-tRNA syn 86.7 0.93 2E-05 51.7 5.2 72 40-123 5-76 (431)
147 PTZ00126 tyrosyl-tRNA syntheta 86.5 0.79 1.7E-05 52.0 4.6 26 634-664 256-282 (383)
148 PRK00927 tryptophanyl-tRNA syn 86.5 0.81 1.8E-05 51.1 4.6 64 47-123 10-73 (333)
149 cd00395 Tyr_Trp_RS_core cataly 86.4 1.3 2.7E-05 48.1 5.9 21 536-557 152-172 (273)
150 cd00806 TrpRS_core catalytic c 86.3 1.7 3.6E-05 47.4 6.8 67 46-123 7-73 (280)
151 cd00806 TrpRS_core catalytic c 81.7 1.9 4.1E-05 47.0 4.8 26 634-664 190-216 (280)
152 PRK12283 tryptophanyl-tRNA syn 80.2 2.5 5.4E-05 47.8 5.2 64 47-123 11-75 (398)
153 PTZ00348 tyrosyl-tRNA syntheta 79.6 23 0.0005 43.3 13.4 26 634-664 221-247 (682)
154 PRK13354 tyrosyl-tRNA syntheta 79.4 3.3 7.1E-05 47.6 6.0 29 634-664 229-257 (410)
155 PRK12285 tryptophanyl-tRNA syn 78.1 2.4 5.3E-05 47.9 4.3 22 538-560 204-225 (368)
156 PF09190 DALR_2: DALR domain; 77.9 5.9 0.00013 32.5 5.5 53 735-793 1-54 (63)
157 PRK08560 tyrosyl-tRNA syntheta 77.6 7.4 0.00016 43.4 8.0 75 36-123 29-103 (329)
158 COG0180 TrpS Tryptophanyl-tRNA 76.1 12 0.00027 41.0 8.9 76 36-123 4-80 (314)
159 PRK12284 tryptophanyl-tRNA syn 76.1 8.3 0.00018 44.2 7.8 22 538-560 149-170 (431)
160 TIGR00464 gltX_bact glutamyl-t 76.1 5 0.00011 47.1 6.3 31 634-665 240-271 (470)
161 PF00579 tRNA-synt_1b: tRNA sy 75.8 5 0.00011 43.9 6.0 23 537-560 149-171 (292)
162 TIGR00234 tyrS tyrosyl-tRNA sy 75.3 3.3 7.1E-05 47.1 4.4 40 37-81 30-70 (377)
163 cd00805 TyrRS_core catalytic c 75.2 2.4 5.3E-05 45.8 3.2 28 634-664 194-221 (269)
164 TIGR00233 trpS tryptophanyl-tR 74.8 6.7 0.00015 43.7 6.7 74 38-123 3-76 (328)
165 COG5270 PUA domain (predicted 74.4 2.1 4.6E-05 42.4 2.2 41 147-192 2-42 (202)
166 PRK05912 tyrosyl-tRNA syntheta 74.1 7.2 0.00016 44.9 6.8 29 634-664 231-259 (408)
167 KOG0434|consensus 73.7 1.8 3.8E-05 51.1 1.7 86 141-230 332-452 (1070)
168 COG0162 TyrS Tyrosyl-tRNA synt 72.6 3.2 6.9E-05 47.2 3.4 16 537-552 180-195 (401)
169 TIGR00373 conserved hypothetic 72.4 3.6 7.7E-05 40.7 3.4 99 87-190 29-142 (158)
170 PLN02486 aminoacyl-tRNA ligase 69.5 48 0.001 37.8 11.9 26 634-664 264-290 (383)
171 cd00808 GluRS_core catalytic c 69.0 9.3 0.0002 40.5 5.8 32 634-666 161-193 (239)
172 smart00531 TFIIE Transcription 68.4 3.9 8.5E-05 39.9 2.7 67 124-190 60-137 (147)
173 cd07963 Anticodon_Ia_Cys Antic 68.2 42 0.00092 32.9 10.0 64 677-763 2-66 (156)
174 PF05746 DALR_1: DALR anticodo 68.2 20 0.00044 33.1 7.4 54 718-771 31-84 (119)
175 cd07955 Anticodon_Ia_Cys_like 67.5 24 0.00051 30.6 7.1 57 677-761 2-60 (81)
176 KOG1195|consensus 66.0 40 0.00087 39.0 10.1 111 645-765 405-527 (567)
177 PTZ00126 tyrosyl-tRNA syntheta 64.4 13 0.00027 42.4 6.0 78 36-123 65-142 (383)
178 smart00840 DALR_2 This DALR do 64.2 20 0.00043 28.3 5.6 28 736-763 2-30 (56)
179 PRK00927 tryptophanyl-tRNA syn 64.2 10 0.00022 42.3 5.3 27 634-665 192-221 (333)
180 cd00671 ArgRS_core catalytic c 61.5 11 0.00024 39.1 4.7 16 409-424 96-111 (212)
181 COG0162 TyrS Tyrosyl-tRNA synt 61.1 8.6 0.00019 43.8 3.9 73 37-116 32-108 (401)
182 COG0180 TrpS Tryptophanyl-tRNA 61.0 12 0.00026 41.1 4.8 22 538-560 146-167 (314)
183 PF01927 Mut7-C: Mut7-C RNAse 59.3 22 0.00048 34.6 6.0 31 65-97 12-42 (147)
184 PRK06266 transcription initiat 58.1 8 0.00017 39.0 2.7 44 148-191 106-151 (178)
185 PLN02886 aminoacyl-tRNA ligase 58.0 17 0.00037 41.2 5.6 90 40-144 49-139 (389)
186 smart00836 DALR_1 DALR anticod 56.1 71 0.0015 29.6 8.8 51 719-769 35-85 (122)
187 PRK12556 tryptophanyl-tRNA syn 53.7 26 0.00055 39.2 6.1 23 537-560 149-171 (332)
188 PF13240 zinc_ribbon_2: zinc-r 50.9 8.2 0.00018 25.0 1.0 23 161-186 1-23 (23)
189 TIGR00234 tyrS tyrosyl-tRNA sy 48.6 27 0.00058 39.8 5.3 14 634-647 220-233 (377)
190 PRK12283 tryptophanyl-tRNA syn 47.9 36 0.00078 38.8 6.1 26 634-664 263-288 (398)
191 PRK12410 glutamylglutaminyl-tR 47.5 59 0.0013 37.7 7.8 33 634-667 234-267 (433)
192 PTZ00348 tyrosyl-tRNA syntheta 46.9 64 0.0014 39.5 8.4 77 36-123 31-108 (682)
193 PRK01406 gltX glutamyl-tRNA sy 45.8 28 0.00061 40.9 5.0 32 634-666 250-282 (476)
194 COG0495 LeuS Leucyl-tRNA synth 45.7 0.96 2.1E-05 55.7 -7.2 100 256-362 207-312 (814)
195 KOG2145|consensus 43.1 20 0.00043 38.4 2.8 27 35-61 83-109 (397)
196 COG4332 Uncharacterized protei 42.5 13 0.00028 36.8 1.3 22 434-458 5-26 (203)
197 PRK14895 gltX glutamyl-tRNA sy 41.6 38 0.00083 39.9 5.2 32 634-666 239-271 (513)
198 PLN02886 aminoacyl-tRNA ligase 41.3 40 0.00088 38.3 5.2 24 536-560 183-206 (389)
199 PRK00398 rpoP DNA-directed RNA 39.7 22 0.00048 27.1 2.0 33 159-191 3-36 (46)
200 COG1645 Uncharacterized Zn-fin 38.6 21 0.00045 33.9 2.0 40 145-191 18-59 (131)
201 COG1996 RPC10 DNA-directed RNA 36.8 33 0.00071 26.8 2.5 36 157-192 4-40 (49)
202 PRK03824 hypA hydrogenase nick 36.7 90 0.0019 30.0 6.1 51 134-185 39-116 (135)
203 PRK12282 tryptophanyl-tRNA syn 36.3 84 0.0018 35.1 6.7 65 47-123 11-75 (333)
204 COG1592 Rubrerythrin [Energy p 35.9 49 0.0011 32.9 4.2 27 159-187 134-160 (166)
205 cd00807 GlnRS_core catalytic c 35.7 1.1E+02 0.0023 32.5 6.9 49 634-682 163-227 (238)
206 PF13248 zf-ribbon_3: zinc-rib 34.0 21 0.00047 23.7 1.0 24 160-186 3-26 (26)
207 COG1675 TFA1 Transcription ini 33.7 25 0.00055 35.3 1.8 105 86-191 20-147 (176)
208 PLN03233 putative glutamate-tR 32.0 1.1E+02 0.0025 36.2 7.1 50 634-683 245-310 (523)
209 PRK13794 hypothetical protein; 31.2 35 0.00076 40.2 2.8 36 152-192 3-38 (479)
210 COG0375 HybF Zn finger protein 30.7 35 0.00075 31.7 2.1 35 151-186 62-96 (115)
211 PRK12496 hypothetical protein; 29.9 33 0.00071 34.2 1.9 34 156-190 124-157 (164)
212 COG2995 PqiA Uncharacterized p 29.8 36 0.00078 38.2 2.4 49 140-190 201-249 (418)
213 cd09287 GluRS_non_core catalyt 29.2 1.3E+02 0.0028 32.0 6.3 48 634-681 165-228 (240)
214 TIGR00440 glnS glutaminyl-tRNA 29.1 1.7E+02 0.0036 34.8 7.8 48 634-681 240-303 (522)
215 KOG2144|consensus 29.0 37 0.0008 36.5 2.2 42 535-585 175-216 (360)
216 cd06545 GH18_3CO4_chitinase Th 27.3 1.7E+02 0.0037 31.1 7.1 98 45-151 33-133 (253)
217 PF07754 DUF1610: Domain of un 26.6 39 0.00084 22.2 1.1 23 162-184 1-24 (24)
218 PTZ00402 glutamyl-tRNA synthet 26.6 1.7E+02 0.0038 35.2 7.4 50 634-683 287-352 (601)
219 PRK12558 glutamyl-tRNA synthet 26.2 1.1E+02 0.0023 35.7 5.5 32 634-666 239-271 (445)
220 smart00659 RPOLCX RNA polymera 25.7 69 0.0015 24.4 2.6 34 159-192 2-35 (44)
221 PLN02627 glutamyl-tRNA synthet 25.4 1.1E+02 0.0024 36.3 5.5 32 634-666 292-324 (535)
222 PF09862 DUF2089: Protein of u 25.2 33 0.0007 31.8 0.9 35 162-199 1-35 (113)
223 PRK00564 hypA hydrogenase nick 25.2 49 0.0011 30.9 2.1 33 153-185 65-97 (117)
224 PRK00420 hypothetical protein; 24.1 42 0.0009 31.1 1.4 42 141-188 9-52 (112)
225 COG0008 GlnS Glutamyl- and glu 23.4 1.2E+02 0.0026 35.6 5.2 31 634-665 249-280 (472)
226 TIGR01206 lysW lysine biosynth 22.8 54 0.0012 26.2 1.6 32 162-193 5-39 (54)
227 COG3770 MepA Murein endopeptid 22.5 35 0.00075 35.5 0.5 12 438-449 69-80 (284)
228 PF04405 ScdA_N: Domain of Unk 22.3 82 0.0018 25.3 2.6 46 59-106 3-51 (56)
229 PTZ00437 glutaminyl-tRNA synth 21.7 75 0.0016 37.9 3.2 50 634-683 285-350 (574)
230 PRK03681 hypA hydrogenase nick 21.6 64 0.0014 30.0 2.1 55 131-185 39-96 (114)
231 PRK05347 glutaminyl-tRNA synth 21.1 2E+02 0.0044 34.3 6.5 49 634-682 269-333 (554)
232 COG2176 PolC DNA polymerase II 20.8 1.1E+02 0.0024 39.3 4.5 47 488-552 940-986 (1444)
No 1
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.1e-188 Score=1702.09 Aligned_cols=848 Identities=37% Similarity=0.679 Sum_probs=747.6
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCcccCCCCCCCCCCcEEEEecCCCCCCc-CcchHHHhHHHHHHHHHHHHHcCCccccc
Q psy2890 1 MQKKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGK-LHMGHVRNYTINDVMYRYMRMNGYNVLMP 79 (893)
Q Consensus 1 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~~i~~~~P~~nG~-lHiGH~~~~~~~Di~~R~~r~~G~~V~~~ 79 (893)
|.+.|||.+||++||++|+++++|+...+.+ .++++|||++|||||||. |||||+++|+++|+++||+||+||+|+|+
T Consensus 76 ~~~~y~~~~iE~kwq~~W~e~~~f~~~~~~~-~~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~ 154 (963)
T PLN02563 76 AKRAYPFHEIEPKWQRYWEENRTFRTPDDVD-TSKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHP 154 (963)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCcccccccc-CCCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeeccc
Confidence 4568999999999999999999999765211 237889999999999997 99999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceee
Q psy2890 80 MGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIV 159 (893)
Q Consensus 80 ~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v 159 (893)
+|||+||+|||++|++.|.+|.+++.++++.|+++|++||+++||++++.|++|.|++++||+|.+|+++||||++.++|
T Consensus 155 ~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY~~~~~v 234 (963)
T PLN02563 155 MGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQAEVPV 234 (963)
T ss_pred ccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHHHHhhcccccceeeeec
Q psy2890 160 NWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIGKSKGIFLAFP 239 (893)
Q Consensus 160 ~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~wi~~s~~~~i~f~ 239 (893)
+|||.|+|+||++||++|+|++||.+++.+++.||||+|++|+++|+++| +.++ ||++++.||+||||||.|++|+|+
T Consensus 235 ~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l-~~~~-wp~~v~~~q~nwiG~s~g~~i~F~ 312 (963)
T PLN02563 235 NWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDL-DDLD-WPESIKEMQRNWIGRSEGAELDFS 312 (963)
T ss_pred eecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHhh-hhcC-CCHHHHHHHHHhccccceEEEEEE
Confidence 99999999999999999999999999999999999999999999999999 8886 999999999999999999999999
Q ss_pred cccCCCCCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhh--chHHHHHHHHHHhhcCcccc--cccccccc
Q psy2890 240 HNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAAR--NNLLLQKFILEYKKNNNIES--NNLLKKSI 315 (893)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~g~ 315 (893)
+.++.. ...+.+|+|||||||||+|++||||||+|+|+..+.. .+..+.+|++........++ ....+.|.
T Consensus 313 ~~~~~~-----~~~~~~l~V~TTrPeTl~g~t~iav~p~~~yv~~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~k~g~ 387 (963)
T PLN02563 313 VLDGEG-----KERDEKITVYTTRPDTLFGATYLVVAPEHPLLSSLTTAEQKEAVEEYVDAASRKSDLERTELQKEKTGV 387 (963)
T ss_pred ecCccc-----cCCCCEEEEEeCCChHHhhccEEEECCCChhhHhhhcccchHHHHHHHHHHhchhHHhhhhccceeccc
Confidence 863210 0013589999999999999999999999999977643 34456677765443332222 12346788
Q ss_pred ccceEEEcCCCCCeeeEEEecccccCCCCCcc-ccCCCCCHHHHHHHHHcCCceeeeecCCCCCccccccccccccCCcc
Q psy2890 316 LTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAA-IGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENC 394 (893)
Q Consensus 316 ~~g~~~~~P~~~~~ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~~~g~~ 394 (893)
++|.++.||++|+++||+.++||+ +++|||| |+|||||++||+||++||||+++||++.++.. +.. +++|+++|+
T Consensus 388 ~~g~~~~~P~~~~~iPI~~ad~V~-~~~GTGaVm~~PaHd~~D~~~a~k~~Lpi~~vI~~~d~~~-~~~-~~~y~~~G~- 463 (963)
T PLN02563 388 FTGSYAINPATGEAIPIWVADYVL-GSYGTGAIMAVPAHDTRDFEFAQKFDLPIKWVVKPADGNE-DDA-EKAYTGEGV- 463 (963)
T ss_pred ccCcEEeccCCCCeeEEEEecccC-CCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeccCcccc-ccc-cccccCcee-
Confidence 999999999999999999999999 9999999 99999999999999999999999996511210 011 367888999
Q ss_pred ccccCCC----CCCCCHHHHHHHHHHHHHHcCCCCeeeEeeecceeeccccccCCccCeEEcCCCC-eeecCCCCCCccC
Q psy2890 395 YCINSCK----YNNMSHKEATNAISTDLIKLGLGNKKNIFRLRDWAISRQRYWGTPIPIIYCDSCG-SVPVPEKDLPVIL 469 (893)
Q Consensus 395 ~~~~s~~----~~gl~~~~a~~~i~~~L~~~~~~~~~~~~~l~DW~ISRQr~WG~pIPi~~~~~~~-~v~v~~~~lpv~l 469 (893)
|+||+. |+||++.+|+++|++.|++.|+++++++|+|||||||||||||+|||+|||++|| .+++++++||+.|
T Consensus 464 -l~ns~~~~~~~~Gl~~~eA~~~Ii~~L~~~g~~~~~v~y~lrDW~ISRQRyWG~PIPi~~c~~cg~~v~v~e~~Lpv~l 542 (963)
T PLN02563 464 -IVNSSSSGLDINGLSSKEAAKKVIEWLEETGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLEDSGEPVPVPESDLPLTL 542 (963)
T ss_pred -EecCCCcccccCCcCHHHHHHHHHHHHHhCCCCCCeeEecCCCceEeeecccCCceEEEEEcCCCcEEecchHhCcccc
Confidence 999987 9999999999999999999999999999999999999999999999999999988 7889999999999
Q ss_pred CCc--cCC---C-CcccccccccccccCCCCccceecCCcccccccccchhhhhcCCCccccCCChhhhhccCCceeeec
Q psy2890 470 PET--CVP---N-NLLKENKKFLHVSCPKCNKLAFRETDTMDTFVDSSWYYMRYISPKLENFMIDDNKINYWMPVDQYIG 543 (893)
Q Consensus 470 p~~--~~~---g-~~l~~~~~~~~~~c~~~g~~~~re~d~~D~WfdSsw~~~~~~~p~~~~~~~~~~~~~~~~PvD~~ig 543 (893)
|+. +.+ | +||...++|+++.||+||++++||+|||||||||||||++|++|++++.+|+++.+++|+|||+|+|
T Consensus 543 pe~~~~~~~~~g~~pl~~~~~~~~~~~p~cg~~~~RetDtmDtw~~Sswy~~r~~~p~~~~~~~~~~~~~~w~PvD~yig 622 (963)
T PLN02563 543 PELDDFTPTGTGEPPLAKAVSWVNTVDPSSGKPARRETNTMPQWAGSCWYYLRFMDPKNSNALVDKEKEKYWMPVDLYVG 622 (963)
T ss_pred hhhhhcccCCCCCCchhcchhhhcCcCcCCCCCcEECCCcCCchhhccHHHHHHhCCCccccccCHHHHhCcCCCcEeec
Confidence 953 333 3 5888889999999999999999999999999999999999999999999999988999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcCccCCCccceeeecceEec----eeeeecccCCCCccccCCCcccccccCCCCc---
Q psy2890 544 GIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILN----KTYYRIENSSNKKRWYNPDDVKITLDKKNKP--- 616 (893)
Q Consensus 544 G~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pfk~l~~~G~v~~----~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~--- 616 (893)
|.||+|+||+|+|||+++|.++|++.+++||++|++||||++ .+|+ | .+|+ |+++++|+......+..
T Consensus 623 G~dhailHLlY~Rfw~~~l~~~g~~~~~ePfk~ll~qGmVl~~~~~~~~~--d-~~G~--~~~~~~~~~~~~~~~~~~~~ 697 (963)
T PLN02563 623 GAEHAVLHLLYARFWHKVLYDIGVVSTKEPFQCLVNQGMILGEVEYTAFK--D-SDGE--YVSADTADRLGELQQEKIPE 697 (963)
T ss_pred cHHHHhhHhHHHHHHHHHHHHhhccCCcccHHHHhccceeecCcccccee--c-CCCc--Cccccccccccccccccccc
Confidence 999999999999999999999999999999999999999998 4565 6 7886 77766554221100000
Q ss_pred -------cceeeecCCCcc-eeccccccccCCCCccCccchhhhhCchhHHHHHHhcCCCCCCcccChhhhhHHHHHHHH
Q psy2890 617 -------IHAILKLDKKPV-IIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNR 688 (893)
Q Consensus 617 -------~~~~~~~~g~~~-~~~~~~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~~~~l~r 688 (893)
...++ .+|..+ +.++++||||||||+|+|+++|++||||++|||+|+++|++++++|+++++++++||++|
T Consensus 698 ~~~~~~~~~~~~-~~~~~~~~~~~~eKMSKSKGNvVdP~eiI~kYGADaLRl~ll~~ap~~dd~~w~~~~V~g~~rfL~r 776 (963)
T PLN02563 698 EKVIKSGDSFVL-KDDPSIRLIARAHKMSKSRGNVVNPDDVVSEYGADSLRLYEMFMGPLRDSKTWSTSGVEGVHRFLGR 776 (963)
T ss_pred cccccccccccc-ccCCcccccccccccccccCCcCCHHHHHHHcCcHHHHHHHHhCCCcccccccCHHHHHHHHHHHHH
Confidence 12233 445433 356668999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhccccccccccccCCccccCCChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccc
Q psy2890 689 VWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIFNILERINSETKF 768 (893)
Q Consensus 689 l~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fvn~l~~~~k~~~~ 768 (893)
+||++..... .. ..+... ........|+|++++++.++++|+++|++|+|++|++.+|+|+|.+++..
T Consensus 777 lwn~~~~~~~-~~--~~~~~~----~~~~~~~~d~~ll~kl~~~ikkVte~~e~y~FntAi~~lmef~n~l~~~~----- 844 (963)
T PLN02563 777 TWRLVVGAPL-PD--GSFRDG----TVVTDEEPSLEQLRLLHKCIAKVTEEIESTRFNTAISAMMEFTNAAYKWD----- 844 (963)
T ss_pred HHHHHHHhhh-cc--cccCcc----ccccCCcchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCch-----
Confidence 9999876521 00 011000 00111246899999999999999999999999999999999999886420
Q ss_pred CCCCCcccHHHHHHHHHHHHHHhcccccchHHHHHHHhhccCCCCCeeeccCCCCChhhhhhHHHHHHHHHHhhhhcceE
Q psy2890 769 DNNKNTNNDILLYEGMSIFLRVLNPIAPHITHILWKELKYSIQQGDILNACWPKIDSLALEEEKEEVKLIIQINGKFRGH 848 (893)
Q Consensus 769 ~~~~~~~~~~~l~~~l~~ll~LL~P~~P~isEEIwq~L~~~~~~~sI~~~~wP~~d~~~~~~~~~~~~~vv~i~gk~R~~ 848 (893)
..+.++++.+++||+|||||+|||||+.|+. .+||+.++||++++.++. +++++++||||||+|++
T Consensus 845 ---------~~~~~~l~~ll~LLaPf~PhiaEELW~~Lg~---~~sv~~~~WP~~d~~~l~--~~~~~~~vqiNGK~r~~ 910 (963)
T PLN02563 845 ---------KVPREAIEPFVLLLSPYAPHLAEELWFRLGH---SNSLAYEPWPEANPSYLV--DDTVVLPVQINGKTRGT 910 (963)
T ss_pred ---------HHHHHHHHHHHHHHHhhhhhHHHHHHHHcCC---CCeeeeCCCCCCCHHHhh--cCceEEEEEECCEEeeE
Confidence 1567899999999999999999999999986 679999999999999988 78899999999999999
Q ss_pred EEecCCCCHHHHHHHHhhChhHHHHhcC-CCEEEEEeCCCeEEEeC
Q psy2890 849 IFVKKKCTTDFIKKIVLKNKVIQKYIIH-PPKKFFIIPNKLVNIII 893 (893)
Q Consensus 849 ~~v~~~~~~e~i~~~~~~~~~v~k~l~~-~i~kvi~vp~klvn~v~ 893 (893)
++|+.++++|+++++|++++.++++|.| +|+|+||||+||||||+
T Consensus 911 i~v~~~~~~~~i~~~a~~~~~v~~~l~~k~i~K~I~vp~kivNiV~ 956 (963)
T PLN02563 911 IEVEEGCSEDDAFALASQDEKLSKYLDGKEIKKRIYVPGKILNVIL 956 (963)
T ss_pred EEeCCCCCHHHHHHHHhcCHHHHHHhCCCCceEEEEECCcEEEEEe
Confidence 9999999999999999999999999999 99999999999999996
No 2
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=5e-186 Score=1680.16 Aligned_cols=831 Identities=46% Similarity=0.836 Sum_probs=758.5
Q ss_pred CCchHHHHHHHHHHHhCCCcccCCCCCCCCCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCcccccccccc
Q psy2890 5 YNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDA 84 (893)
Q Consensus 5 y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~ 84 (893)
|||+++|++||++|+++++|+...+.+ +++||+++|||||||.|||||+++|+++|+++||+||+||+|++++||||
T Consensus 1 y~~~~iE~kwq~~W~~~~~f~~~~~~~---k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~ 77 (842)
T TIGR00396 1 YNHIEIEEKWQQKWKENKVFKFTDDSN---KPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDA 77 (842)
T ss_pred CCHHHHHHHHHHHHHhcCCcccCCCCC---CCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCC
Confidence 899999999999999999999876544 78899999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeeeecCC
Q psy2890 85 FGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPI 164 (893)
Q Consensus 85 ~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~ 164 (893)
||+|||++|+++|++|.+|+.++++.|+++|++||+++||++++.|++|.|++++|++|.+|+++|+||++.++|+|||.
T Consensus 78 ~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy~~~~~v~wcp~ 157 (842)
T TIGR00396 78 FGLPAENAAIKRGIHPAKWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPN 157 (842)
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCeEeeccceEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccchhc-cCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHHHHhhcccccceeeeeccccC
Q psy2890 165 EKTVLANEQVI-NGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIGKSKGIFLAFPHNIK 243 (893)
Q Consensus 165 ~~t~l~~~ev~-~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~wi~~s~~~~i~f~~~~~ 243 (893)
|+|+||++||. +|+|++||.+|+.++++||||+|++|+++|+++| +.+++||++++.||+||||+|.|++|+|++.+.
T Consensus 158 ~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l-~~~~~wp~~v~~~q~~wig~s~g~~i~f~~~~~ 236 (842)
T TIGR00396 158 DGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDL-EELDHWPESVKEMQRNWIGKSEGVEITFKIADH 236 (842)
T ss_pred CCCCccHHHHhhcCccccCCCcceEeecceeEEehhhhHHHHHHHH-hhhccccHHHHHHHHhcccccceEEEEEEcCCC
Confidence 99999999995 5899999999999999999999999999999999 888889999999999999999999999998732
Q ss_pred CCCCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhchHHHHHHHHHHhhcCcccc--ccccccccccceEE
Q psy2890 244 DPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYKKNNNIES--NNLLKKSILTQLKV 321 (893)
Q Consensus 244 ~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~g~~~ 321 (893)
+.+|+|||||||||+||+||||||+|+|+......+..+..|++++...+..++ ....+.|.++|++|
T Consensus 237 ----------~~~l~v~TTrP~Tl~g~~~iav~p~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 306 (842)
T TIGR00396 237 ----------KEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAENNPKVAAFIKKILQKTTTERTKETKLKKGVFTGIKA 306 (842)
T ss_pred ----------CCEEEEEeCCcHHhhhccEEEECCCCHHHHhhhcchHHHHHHHHHHhccCchhhhhhhcccccEecCCEE
Confidence 468999999999999999999999999998876566678888877654433332 12346778999999
Q ss_pred EcCCCCCeeeEEEecccccCCCCCcc-ccCCCCCHHHHHHHHHcCCceeeeecCCCCCccccccccccccCCccccccCC
Q psy2890 322 LHPLTNQEIKVFVVNYVIEKSYGRAA-IGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSC 400 (893)
Q Consensus 322 ~~P~~~~~ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~~s~ 400 (893)
.||++|+.+||+.++||+ +++|||+ |+|||||++||++|++|||+++++|++ +|. ++. .++|+++|+ |+++|
T Consensus 307 ~~P~~~~~ipi~~~~~V~-~~~GTG~V~~~Pahd~~D~~~~~k~~L~i~~vi~~-~~~--~~~-~~~~~~~G~--~~~~~ 379 (842)
T TIGR00396 307 IHPLTGEKIPIWVANYVL-ASYGTGAVMGVPAHDERDFEFAQKYKLPIKVVIDP-AGK--NLK-TQAFTEDGV--LVNSG 379 (842)
T ss_pred ECCCCCCEeEEEEeCccc-CCCCCCeEEEcCCCCHHHHHHHHHhCCCcceeeCC-ccc--ccc-cccccCCce--Eecch
Confidence 999999999999999999 9999999 999999999999999999999999986 442 111 357888999 99999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCCeeeEeeecceeeccccccCCccCeEEcCCCCeeecCCCCCCccCCCccCC---C-
Q psy2890 401 KYNNMSHKEATNAISTDLIKLGLGNKKNIFRLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVP---N- 476 (893)
Q Consensus 401 ~~~gl~~~~a~~~i~~~L~~~~~~~~~~~~~l~DW~ISRQr~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~---g- 476 (893)
+|+||++.+|+++|++.|++.|+++++++|||+|||||||||||+|||+|||++||.+++++++||+.||+++.+ |
T Consensus 380 ~~~Gl~~~~A~~~Ii~~L~~~g~~~~~v~yrlrDW~ISRQRyWG~PIPi~~~~~~g~~~v~~~~lp~~l~~~~~~~~~~~ 459 (842)
T TIGR00396 380 EFNGLNSSEAREAIIAMLEKEGKGKRKVNYRLRDWLFSRQRYWGEPIPIIHCEDGGAVPVPEEDLPVILPELVNYDPDGN 459 (842)
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCCCceEEeecccceeecccccCCceEEEEECCCCeEeCcchhcchhhhhhhhccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987765 3
Q ss_pred CcccccccccccccCCCCccceecCCcccccccccchhhhhcCCCccccCCChhhhhccCCceeeecchhhHHHHHHHHH
Q psy2890 477 NLLKENKKFLHVSCPKCNKLAFRETDTMDTFVDSSWYYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYAR 556 (893)
Q Consensus 477 ~~l~~~~~~~~~~c~~~g~~~~re~d~~D~WfdSsw~~~~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~r 556 (893)
+|+..+++|++++||+||+.++||+|||||||||||||+||++|.+...+++++.+++|+|+|+|+||+||+|+||+|+|
T Consensus 460 ~pl~~~~~~~~~~cp~cg~~~~retDtmDtw~dSswy~~r~~~p~~~~~~~~~~~~~~~~PvD~yi~G~dhailHLlyaR 539 (842)
T TIGR00396 460 SPLSRIQEWVNVTCPSCGKPALRETDTMDTFAGSSWYYLRYLDPKNTDQPFDKEKAEYWLPVDLYIGGAEHAILHLLYAR 539 (842)
T ss_pred CchhhhhhhhcCcCccCCCCcEeCCCCCCCcccCCHHHHHhhCCCCcCCCcChHHHhccCCCcEeeccHHHHHHHHHHHH
Confidence 68888899999999999999999999999999999999999999988889999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceecccccc
Q psy2890 557 FWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKM 636 (893)
Q Consensus 557 f~~~~l~~~g~~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KM 636 (893)
||+++|.+.|++.+++||++|++||||++.+ + + ++|+ |++|++|+ .+ .++. ...+|+.+ .++++||
T Consensus 540 f~~~~l~~~~~~~~~~Pfk~l~~~G~Vl~~~-~--~-~~G~--~~~~~~~~--~~-~~~~----~~~~~~~~-~~~~~KM 605 (842)
T TIGR00396 540 FWHKFLYDIGYVSTKEPFKKLINQGMVLGFY-Y--P-PNGK--SPPDELTE--RD-EKAK----DKSGGELV-VVGYEKM 605 (842)
T ss_pred HHHHHHHhccccCCCccHHHHhccceEEeee-e--c-CCCC--ccChhhhc--cc-cccc----cccCCccc-ccchhhh
Confidence 9999999999999999999999999999755 2 3 5675 89999987 22 2322 22677665 6678899
Q ss_pred ccCCCCccCccchhhhhCchhHHHHHHhcCCCCCCcccChhhhhHHHHHHHHHHHHHHhhhhccccccccccccCCcccc
Q psy2890 637 SKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHNDFSVI 716 (893)
Q Consensus 637 SKSkgN~i~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~~~~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (893)
|||+||+|+|.++|++||||++|||+|++++++++++|+++.++++++|++|+||+++++..+......+ ...
T Consensus 606 SKS~GN~v~p~~ii~~ygaDalRl~~l~~~~~~~d~~~~~~~l~~~~~~l~kl~~~~~~~~~~~~~~~~~-------~~~ 678 (842)
T TIGR00396 606 SKSKGNGIDPQEIVKKHGADALRLYIMFMGPIAASLEWNDSGLEGARRFLDRVWNLFYNILGELDGKTYL-------TPT 678 (842)
T ss_pred hhcCCCcCCHHHHHHHcCchHHHHHHHhcCCcCCCCccCHHHHHHHHHHHHHHHHHHHHHHhhhcccccC-------Ccc
Confidence 9999999999999999999999999999999999999999999999999999999999865422110001 112
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhhcccccCCCCCcccHHHHHHHHHHHHHHhcccc
Q psy2890 717 KFNNNQKVFRRKIHKILQQINRDIKRIQ-YNTVVSGCMKIFNILERINSETKFDNNKNTNNDILLYEGMSIFLRVLNPIA 795 (893)
Q Consensus 717 ~~~~~D~~il~~l~~~i~~v~~~~e~~~-f~~ai~~l~~fvn~l~~~~k~~~~~~~~~~~~~~~l~~~l~~ll~LL~P~~ 795 (893)
.++..|+||++++++++++|+++|++|+ |++|++.+|+|+|+++++.+ ..+++++++.+++||+||+
T Consensus 679 ~l~~~d~~il~~l~~~i~~v~~~~e~y~~fn~ai~~l~~f~n~L~~~~~------------~~~l~~~l~~ll~lLaPf~ 746 (842)
T TIGR00396 679 ILEEAQKELRRDVHKFLKKVTEDLEKLESFNTAISAMMILLNALYKAKK------------DALYLEYLKGFLTVLSPFA 746 (842)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhh------------HHHHHHHHHHHHHHHhhhh
Confidence 3567899999999999999999999988 99999999999999987632 1479999999999999999
Q ss_pred cchHHHHHHHhhccCCCCCeeeccCCCCChhhhhhHHHHHHHHHHhhhhcceEEEecCCCCHHHHHHHHhhChhHHHHhc
Q psy2890 796 PHITHILWKELKYSIQQGDILNACWPKIDSLALEEEKEEVKLIIQINGKFRGHIFVKKKCTTDFIKKIVLKNKVIQKYII 875 (893)
Q Consensus 796 P~isEEIwq~L~~~~~~~sI~~~~wP~~d~~~~~~~~~~~~~vv~i~gk~R~~~~v~~~~~~e~i~~~~~~~~~v~k~l~ 875 (893)
||+|||||+.|+.. ++||+.++||++++..+. ++.++++||||||+|++++|+.++++++++++|++++.++++|.
T Consensus 747 PhiaEElW~~l~~~--~~sv~~~~wP~~d~~~l~--~~~~~~~vqiNGK~r~~i~v~~~~~~~~i~~~a~~~~~v~~~l~ 822 (842)
T TIGR00396 747 PHLAEELWEKLGSE--PFIIKQAKWPKVDETALV--EDKVTIVLQVNGKFKAKKTVPKDADEEQVEELAKQDPEVKKYLE 822 (842)
T ss_pred hHHHHHHHHHhCCC--CCeeecCCCCCCCHHHHh--hcceEEEEEEcCeEEEEEEeCCCCCHHHHHHHHhcCHHHHHHhC
Confidence 99999999999851 258999999999999988 78899999999999999999999999999999999999999999
Q ss_pred C-CCEEEEEeCCCeEEEeC
Q psy2890 876 H-PPKKFFIIPNKLVNIII 893 (893)
Q Consensus 876 ~-~i~kvi~vp~klvn~v~ 893 (893)
| +|+|+||||+||||||+
T Consensus 823 gk~i~k~i~v~~klvNiv~ 841 (842)
T TIGR00396 823 NKTIKKVIYVPGKLVNFVI 841 (842)
T ss_pred CCCceEEEEeCCCEEEEEe
Confidence 9 99999999999999996
No 3
>KOG0435|consensus
Probab=100.00 E-value=4.2e-182 Score=1486.15 Aligned_cols=822 Identities=40% Similarity=0.718 Sum_probs=729.4
Q ss_pred chHHHHHHHHHHHhCCCcccCCCCCCCCCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCcccccccccccc
Q psy2890 7 FVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFG 86 (893)
Q Consensus 7 ~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G 86 (893)
...||+.|+++|++.-.|..+.+.+ ++| ||++|+|||+|.|||||+|.|+++|+++||+||+||+|+++||||.+|
T Consensus 32 ~~~iEk~W~~~~~~~~~~~~~~d~s---k~K-YiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFG 107 (876)
T KOG0435|consen 32 IAMIEKHWKQYLKDGFPFSKDSDKS---KKK-YILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFG 107 (876)
T ss_pred HHHHHHHHHHHHhcCCccccccccC---CCc-eEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccC
Confidence 3468999999999987777654444 666 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeeeecCCCC
Q psy2890 87 MPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEK 166 (893)
Q Consensus 87 ~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~ 166 (893)
||+|++|+++|++|..|+.+|++.|++||++||++|||+|++.||+|+|++++||+|.+|+++||+|+.+.+|||||.++
T Consensus 108 LPAENAAiergv~P~sWT~~NI~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~Ea~VNWDPvD~ 187 (876)
T KOG0435|consen 108 LPAENAAIERGVHPASWTINNIAKMKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDK 187 (876)
T ss_pred CchhhHHHhcCCCchhhhHHHHHHHHHHHHHcCcccccccccccCCcchhHHHHHHHHHHHHhhhhhccccccccCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchh-ccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHHHHhhcccccceeeeeccccCCC
Q psy2890 167 TVLANEQV-INGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIGKSKGIFLAFPHNIKDP 245 (893)
Q Consensus 167 t~l~~~ev-~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~wi~~s~~~~i~f~~~~~~~ 245 (893)
|+||++|| .+|++||+|++||.|.+.|||+++|+|+++|+++| +.|++||+ |+.||+||||+|.|+.+.|++.++..
T Consensus 188 TVLAnEQVD~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L-~~L~~W~~-vk~mQrnWIG~~~G~el~F~ll~~~~ 265 (876)
T KOG0435|consen 188 TVLANEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGL-ETLPEWPE-VKDMQRNWIGRCDGAELMFPLLDDGS 265 (876)
T ss_pred eeecchhhcccCccccccchhhHHHHHHHHhhhhHHHHHHHHHH-Hhhhhhhh-HHHHHHhhcccccceEEEEEeccCCC
Confidence 99999999 68999999999999999999999999999999999 89999999 99999999999999999999985431
Q ss_pred CCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhchHHHHHHHHHHhhcCccccccccccccccceEEEcCC
Q psy2890 246 NKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYKKNNNIESNNLLKKSILTQLKVLHPL 325 (893)
Q Consensus 246 ~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~ 325 (893)
.++.|.|||||||||+|+++++++|+|+++...+ ++.+|+... .... +|.+++..+.||+
T Consensus 266 -------~de~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~----~lkefl~~~--------~l~~-Kg~~lp~~A~Np~ 325 (876)
T KOG0435|consen 266 -------NDEILTVYTTRPETLFGASFLVLAPSHSLLDKDS----SLKEFLSKS--------DLPQ-KGVQLPCQAKNPV 325 (876)
T ss_pred -------CCceEEEEecCchhhccceEEEEcCCchhhhhhc----hHHHhhhhh--------hccc-cCcccceeeccCC
Confidence 1588999999999999999999999999987654 344444311 1112 4888999999999
Q ss_pred CCCeeeEEEecccccCCCCCcc-ccCCCCCHHHHHHHHHcCCceeeeecCCCCCccccccccccccCCccccccCCCCCC
Q psy2890 326 TNQEIKVFVVNYVIEKSYGRAA-IGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNN 404 (893)
Q Consensus 326 ~~~~ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~~s~~~~g 404 (893)
+|+++||+.++||. ..+|||+ |++|+|+.+|++||++-++....++.. .|++.|. ...++.++|
T Consensus 326 tg~~iPv~~a~~v~-~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~------------~f~~~~K--~~~~~~~tn 390 (876)
T KOG0435|consen 326 TGRAIPVVVADYVL-DPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEV------------IFTNFGK--KNEQKAFTN 390 (876)
T ss_pred CCceeeEEEechhc-cCCCcceeeeccCcccchhHHHhcccceeEEEEee------------eecchhh--hhccccccc
Confidence 99999999999999 9999999 999999999999999966655555432 3444444 444567888
Q ss_pred -CCHHHHHHHHHHHHHHcCCCCeeeEeeecceeeccccccCCccCeEEcCCCCeeecCCCCCCccCCCccCC---CCccc
Q psy2890 405 -MSHKEATNAISTDLIKLGLGNKKNIFRLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVP---NNLLK 480 (893)
Q Consensus 405 -l~~~~a~~~i~~~L~~~~~~~~~~~~~l~DW~ISRQr~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~---g~~l~ 480 (893)
+...+|..+|.++++..|.|+..++|+|+||+||||||||||||++||++||.|+||+++|||.||+...+ |+||.
T Consensus 391 ~~~~q~a~~~l~~~~~~~g~g~~~vs~kLkDWLiSRQRyWGTPIPivhc~~cG~vpVpes~LPV~LP~l~~~~~kG~Pls 470 (876)
T KOG0435|consen 391 LDIRQNAALKLFQFAERKGVGGYVVSYKLKDWLISRQRYWGTPIPIVHCDDCGAVPVPESELPVTLPELNDFTPKGPPLS 470 (876)
T ss_pred hhHHHHHHHHHHHHHHhcCCCcceecchhhhhhhhhhhccCCCcceEEcCCCCcccCcHHHCCcccccccccCCCCCccc
Confidence 55567999999999999999999999999999999999999999999999999999999999999987666 89999
Q ss_pred ccccccccccCCCCccceecCCcccccccccchhhhhcCCCccccCCChhhhhccCCceeeecchhhHHHHHHHHHHHHH
Q psy2890 481 ENKKFLHVSCPKCNKLAFRETDTMDTFVDSSWYYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTK 560 (893)
Q Consensus 481 ~~~~~~~~~c~~~g~~~~re~d~~D~WfdSsw~~~~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~~~ 560 (893)
...+|+++.||+||++++|||||||||+||||||+||+||+|...+|++..+.+|||||+||||+|||++||+|||||++
T Consensus 471 ~~~e~vn~~cP~cg~pAkRETDTMDTFvDSsWYYlRylDpkN~e~~~d~a~a~k~MPVDvYIGG~EHAvlHLlYaRF~~k 550 (876)
T KOG0435|consen 471 KADEWVNVDCPRCGEPAKRETDTMDTFVDSSWYYLRYLDPKNPEEPFDKAKAKKNMPVDVYIGGKEHAVLHLLYARFIAK 550 (876)
T ss_pred chhhheeccCccCCCcccccccccchhhccceeeEeecCCCCcccccchhhhhccCceeEEeccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceeccccccccCC
Q psy2890 561 LMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSK 640 (893)
Q Consensus 561 ~l~~~g~~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSKSk 640 (893)
||.++|++.+.|||++|++||||+|.||+. +.+|+ ||+|+||+.+.|... .++++.+++.+++. |+||||||
T Consensus 551 Fl~di~~~~t~EPF~~Li~QGmV~G~tf~~--~~sG~--yl~~~ev~~~nd~~~---~~vlk~~~e~~v~t-~eKMSKSK 622 (876)
T KOG0435|consen 551 FLKDIGVVSTAEPFTKLITQGMVRGKTFRT--KESGK--YLGPEEVQQVNDHQN---KFVLKNDKEVVVVT-YEKMSKSK 622 (876)
T ss_pred HHhhcCCCcCCCcHHHHHhhhcccceEEec--CCCCc--cCCHHHhhhhcCCcc---eeEecCCCcceeee-HHHhhhcc
Confidence 999999999999999999999999999994 25776 999999998766543 57888888888776 99999999
Q ss_pred CCccCccchhhhhCchhHHHHHHhcCCCCCCcccChhhhhHHHHHHHHHHHHHHhhhhccccccccccccCCccccCCCh
Q psy2890 641 NNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNN 720 (893)
Q Consensus 641 gN~i~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~~~~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (893)
+|||||.+++.+||+|++|+|+|+++|++++++|+++.|.|..||+.|+|+++..+.+ ..+..... ......+....
T Consensus 623 ~NGVdP~~~v~~yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi~rwl~riw~l~~~~~~-ar~~g~~~--d~~~~td~~da 699 (876)
T KOG0435|consen 623 HNGVDPADVVLEYGVDTTRLYILFAAPPRDPINWNESAIPGIKRWLQRIWALVSQILQ-ARDDGKAK--DLKKLTDGFDA 699 (876)
T ss_pred cCCCCHHHHHHHhCchHHHHHHHhhCCcccccccccccchhHHHHHHHHHHHHHHHHH-HHhcCCcc--cccccccccch
Confidence 9999999999999999999999999999999999999999999999999999988775 21111110 00001223345
Q ss_pred hHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHhhcccccCCCCCcccHHHHHHHHHHHHHHhcccccchH
Q psy2890 721 NQKVFRRKIHKILQQINRDI-KRIQYNTVVSGCMKIFNILERINSETKFDNNKNTNNDILLYEGMSIFLRVLNPIAPHIT 799 (893)
Q Consensus 721 ~D~~il~~l~~~i~~v~~~~-e~~~f~~ai~~l~~fvn~l~~~~k~~~~~~~~~~~~~~~l~~~l~~ll~LL~P~~P~is 799 (893)
+++.+.+..|.++++|+++| ..+.+|+||+.+|.|.|.|.+..+..+ ........+|..+++||+|++||+|
T Consensus 700 e~~kl~~~~n~fi~~vt~~~e~~~slNtaIS~~m~ltN~l~~a~k~~~-------~h~~~~~~al~~lv~mlaP~aPh~a 772 (876)
T KOG0435|consen 700 ETRKLKETYNFFIKQVTEHYEVLFSLNTAISDMMGLTNALKKALKIVL-------VHSPEFERALEALVIMLAPFAPHVA 772 (876)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-------hcChHHHHHHHHHHHHHhccCchhH
Confidence 67889999999999999999 467899999999999999987664321 1233566789999999999999999
Q ss_pred HHHHHHhhccCCCCCe-eeccCCCCChhhhhhHHHHHHHHHHhhhhcceEEEecCC-CCH--HHHHHHHhhChhHHHHhc
Q psy2890 800 HILWKELKYSIQQGDI-LNACWPKIDSLALEEEKEEVKLIIQINGKFRGHIFVKKK-CTT--DFIKKIVLKNKVIQKYII 875 (893)
Q Consensus 800 EEIwq~L~~~~~~~sI-~~~~wP~~d~~~~~~~~~~~~~vv~i~gk~R~~~~v~~~-~~~--e~i~~~~~~~~~v~k~l~ 875 (893)
+|+|..|+. ..+. ....||+++..++. +.. .+.|+|||+.|+++.++.. +.+ +++.++|++.+.+.+||.
T Consensus 773 sE~Ws~l~~---~~~~~~~~~WP~vd~~~~~--~~~-~~~v~INGk~~g~i~v~~~~l~~~~d~~~e~a~~~e~~~ryL~ 846 (876)
T KOG0435|consen 773 SELWSALAN---DLSWVSDVKWPEVDPDYLI--EFE-VLPVQINGKVRGKIEVDRRILEEMMDDALEFALQTEDGRRYLK 846 (876)
T ss_pred HHHHHHHhc---cccchhccCCccCChhhhc--ccc-eeeEEEcCEecceeecchHHHHHHHHHHHHHHhcCHHHHHHhc
Confidence 999999986 4444 33469999998776 222 6779999999999999987 444 789999999999999999
Q ss_pred C-CCEEEEEeC-CCeEEEeC
Q psy2890 876 H-PPKKFFIIP-NKLVNIII 893 (893)
Q Consensus 876 ~-~i~kvi~vp-~klvn~v~ 893 (893)
| +|+|.+++| .|||||++
T Consensus 847 gkkIkks~~~~r~kiin~i~ 866 (876)
T KOG0435|consen 847 GKKIKKSFYVPRRKIINFIL 866 (876)
T ss_pred CchhhhheechhHHHHHHHH
Confidence 9 999999999 79999874
No 4
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=3.1e-177 Score=1601.49 Aligned_cols=797 Identities=50% Similarity=0.911 Sum_probs=738.3
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCcccCCCCCCCCCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCcccccc
Q psy2890 1 MQKKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPM 80 (893)
Q Consensus 1 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~ 80 (893)
|.++||+.++|++||++|+++++|+...++ +++||+++|||||||.|||||+++++++|+++||+||+|++|++++
T Consensus 1 ~~~~y~~~~iE~~w~~~W~~~~~f~~~~~~----~~~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~ 76 (805)
T PRK00390 1 MMERYNPKEIEKKWQKYWEENKTFKTTEDS----SKKYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPM 76 (805)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcccCccC----CCCEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccC
Confidence 567899999999999999999999986543 3479999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeee
Q psy2890 81 GWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVN 160 (893)
Q Consensus 81 G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~ 160 (893)
||||||+|||.+|+++|++|.+|++++++.|+++|++||+++||++++.|++|.|+++++++|.+|+++|+||++.++|+
T Consensus 77 G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~ 156 (805)
T PRK00390 77 GWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYRKESPVN 156 (805)
T ss_pred ccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcccCCCCeecCCHHHHHHHHHHHHHHHHCCCEEEecCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHHHHhhcccccceeeeecc
Q psy2890 161 WDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIGKSKGIFLAFPH 240 (893)
Q Consensus 161 ~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~wi~~s~~~~i~f~~ 240 (893)
|||.|+|+||++||.+|+|++||++++.++++||||+|++|+++|++++ +.+++||++++.||+||||+|.|++|+|++
T Consensus 157 wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l-~~~~~w~~~v~~~~~~wig~~~~~~i~f~~ 235 (805)
T PRK00390 157 WCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDDL-DKLEDWPEKVKTMQRNWIGRSEGAEVTFKV 235 (805)
T ss_pred ecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecchhHHHHHHHH-HhhccCcHHHHHHHHhhccccceEEEEEEc
Confidence 9999999999999999999999999999999999999999999999999 888889999999999999999999999998
Q ss_pred ccCCCCCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhchHHHHHHHHHHhhcCcccc--ccccccccccc
Q psy2890 241 NIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYKKNNNIES--NNLLKKSILTQ 318 (893)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~g 318 (893)
.++ +.+++|||||||||+||+||||||+|+|+......+..+.++++++......+. ...+++|.+.|
T Consensus 236 ~~~----------~~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~g 305 (805)
T PRK00390 236 EDS----------DEKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAEQNPAVAAFIEECKKKSDLERQTETKEKTGVFTG 305 (805)
T ss_pred cCC----------CCEEEEEeCCchHhhcceEEEECCCChhHHhhhcchHHHHHHHHHHhhhcchhhhhcccceeeeecC
Confidence 732 468999999999999999999999999998876655567778777654433222 23467888999
Q ss_pred eEEEcCCCCCeeeEEEecccccCCCCCcc-ccCCCCCHHHHHHHHHcCCceeeeecCCCCCccccccccccccCCccccc
Q psy2890 319 LKVLHPLTNQEIKVFVVNYVIEKSYGRAA-IGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCI 397 (893)
Q Consensus 319 ~~~~~P~~~~~ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~ 397 (893)
++|.||++++++||+.++||+ +++|||+ |+|||||++||++|++|||++.++|++ +|...+.+ ..+|+++|. |.
T Consensus 306 ~~~~~P~~~~~ipi~~~~~V~-~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~i~~-~g~~~~~~-~~~~~~~g~--~~ 380 (805)
T PRK00390 306 LYAIHPLTGEKIPVWIADYVL-MDYGTGAVMAVPAHDQRDFEFAKKYGLPIKPVIEP-GDGDEDIS-EEAYTGDGV--LI 380 (805)
T ss_pred cEEECCCCCCeeeEEEecccc-CCCCCCeEEEcCCCCHHHHHHHHHcCCCceeeeCC-CCcccccc-cccccCCeE--EE
Confidence 999999999999999999999 9999999 999999999999999999999999986 55211111 457888898 88
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHcCCCCeeeEeeecceeeccccccCCccCeEEcCCCCeeecCCCCCCccCCCccCC--
Q psy2890 398 NSCKYNNMSHKEATNAISTDLIKLGLGNKKNIFRLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVP-- 475 (893)
Q Consensus 398 ~s~~~~gl~~~~a~~~i~~~L~~~~~~~~~~~~~l~DW~ISRQr~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~-- 475 (893)
++|.|+||++.+|+++|++.|++.|+++++++||++|||||||||||+|||+|||++||.+++++++||+.||+.+..
T Consensus 381 ~~~~~~Gl~~~~a~~~Ii~~L~~~g~~~~~v~~~l~DW~ISRQR~WG~PIPi~~~~~~g~~~v~~~~l~~~l~~~~~~~~ 460 (805)
T PRK00390 381 NSGELDGLDSEEAKEAIIAWLEEKGLGKRKVNYRLRDWGISRQRYWGEPIPIIHCEDCGIVPVPEEDLPVVLPEDVVPDG 460 (805)
T ss_pred eccccCCCCHHHHHHHHHHHHHHcCCCCCceEEECCCccccccccCCCceeEEEECCCCceeCchHhhhhhhhhhcccCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999987655
Q ss_pred -CCcccccccccccccCCCCccceecCCcccccccccchhhhhcCCCccccCCChhhhhccCCceeeecchhhHHHHHHH
Q psy2890 476 -NNLLKENKKFLHVSCPKCNKLAFRETDTMDTFVDSSWYYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLY 554 (893)
Q Consensus 476 -g~~l~~~~~~~~~~c~~~g~~~~re~d~~D~WfdSsw~~~~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y 554 (893)
++|+..+++|++..||+||+.++||+|||||||||||||++|++|+++..+|+++++++|+|+|+|+||.||+++||+|
T Consensus 461 ~~~~~~~~~~~~~~~~~~~g~~~~re~Dv~DtwfdSsw~~~~~~~p~~~~~~~~~~~~~~~~P~Dly~~G~D~~i~hL~y 540 (805)
T PRK00390 461 TGSPLAKHPEWVNVTCPKCGKPARRETDTMDTFVGSSWYYLRYTDPHNDEAPFDKEAANYWLPVDQYIGGIEHAVLHLLY 540 (805)
T ss_pred CCChhhhchhhhCCCccccCCCceeCCcccccccccccHHHHhcCcccccCcCChHHhhCcCCCcEEeccHHHHHHHHHH
Confidence 3688888999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceecccc
Q psy2890 555 ARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIE 634 (893)
Q Consensus 555 ~rf~~~~l~~~g~~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~ 634 (893)
+|||+++|.+.|++.+++||++|++||||
T Consensus 541 ~Rf~~~~l~~~~~~~~~~Pfk~v~~~G~v--------------------------------------------------- 569 (805)
T PRK00390 541 ARFFTKVLRDLGLVSSDEPFKKLLTQGMV--------------------------------------------------- 569 (805)
T ss_pred HHHHHHHHHHhhcccCCcchhhheecCcE---------------------------------------------------
Confidence 99999999999998999999999999996
Q ss_pred ccccCCCCccCccchhhhhCchhHHHHHHhcCCCCCCcccChhhhhHHHHHHHHHHHHHHhhhhccccccccccccCCcc
Q psy2890 635 KMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHNDFS 714 (893)
Q Consensus 635 KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~~~~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~ 714 (893)
|||||+||+|+|.+++++||||++|||+|+++++++|++|+++.+++++++++|+||++++... ....+ +
T Consensus 570 KMSKS~GN~i~p~~~i~~ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~~~~l~kl~~~~~~~~~---~~~~~-------~ 639 (805)
T PRK00390 570 KMSKSKGNVVDPDDIIEKYGADTARLFEMFAGPPEKDLEWSDSGVEGAYRFLQRVWRLVVDAKG---EAGAL-------D 639 (805)
T ss_pred EeCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCccCCcccCHHHHHHHHHHHHHHHHHHHHhhh---ccccc-------C
Confidence 9999999999999999999999999999998999999999999999999999999999998443 11111 1
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccccCCCCCcccHHHHHHHHHHHHHHhccc
Q psy2890 715 VIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIFNILERINSETKFDNNKNTNNDILLYEGMSIFLRVLNPI 794 (893)
Q Consensus 715 ~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fvn~l~~~~k~~~~~~~~~~~~~~~l~~~l~~ll~LL~P~ 794 (893)
......|+|+++++++++++++++|++|+|++|++.+|+|+|++++++. ..++.+++++++.+++||+||
T Consensus 640 -~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~f~n~lsk~~~---------~~~~~~l~~~l~~l~~lLaPf 709 (805)
T PRK00390 640 -VAALSEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVNALYKAED---------EQDKAVLREALEILVRLLAPF 709 (805)
T ss_pred -cccChhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhhh
Confidence 1234689999999999999999999999999999999999999999862 246779999999999999999
Q ss_pred ccchHHHHHHHhhccCCCCCeeeccCCCCChhhhhhHHHHHHHHHHhhhhcceEEEecCCCCHHHHHHHHhhChhHHHHh
Q psy2890 795 APHITHILWKELKYSIQQGDILNACWPKIDSLALEEEKEEVKLIIQINGKFRGHIFVKKKCTTDFIKKIVLKNKVIQKYI 874 (893)
Q Consensus 795 ~P~isEEIwq~L~~~~~~~sI~~~~wP~~d~~~~~~~~~~~~~vv~i~gk~R~~~~v~~~~~~e~i~~~~~~~~~v~k~l 874 (893)
|||+|||||+.|+. ++||+.++||++++..+. ++.+++++|||||+|++++++.++++++++++|++++.++++|
T Consensus 710 ~P~iaEElw~~L~~---~~sv~~~~wP~~~~~~~~--~~~~~~~iqingk~r~~i~v~~~~~~~~i~~~a~~~~~i~~~l 784 (805)
T PRK00390 710 APHLAEELWEKLGH---EGSIANAPWPTADEAALV--EDEVTIVVQVNGKVRGKIEVPADASKEEIEALALADEKVQKFL 784 (805)
T ss_pred hhHHHHHHHHHcCC---CCeeEecCCCCCCHHHhh--hhccEEEEEEccceeEEEEeCCCCCHHHHHHHHhcCHHHHHHh
Confidence 99999999999986 679999999999998887 7788999999999999999999999999999999999999999
Q ss_pred cC-CCEEEEEeCCCeEEEeC
Q psy2890 875 IH-PPKKFFIIPNKLVNIII 893 (893)
Q Consensus 875 ~~-~i~kvi~vp~klvn~v~ 893 (893)
.| +|+|+||||+||||||+
T Consensus 785 ~~k~i~k~I~vp~kiiNiv~ 804 (805)
T PRK00390 785 EGKTIKKVIVVPGKLVNIVV 804 (805)
T ss_pred CCCCccEEEEeCCCEEEEEe
Confidence 99 99999999999999996
No 5
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-176 Score=1537.85 Aligned_cols=801 Identities=45% Similarity=0.816 Sum_probs=740.7
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCcccCCCCCCCCC-CcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccc
Q psy2890 1 MQKKYNFVEIEKITQCYWNKINAYQTTENDTRFPN-GKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMP 79 (893)
Q Consensus 1 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~-~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~ 79 (893)
|..+|++.+||+|||++|+++++|+.+.+++ + +||||++|+|||||.|||||+|||+++||++||+||+||+|+|+
T Consensus 1 ~~~~y~~~~IE~KWQ~~W~e~~~Fe~~~d~~---~~~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~P 77 (814)
T COG0495 1 MMSRYNPREIEEKWQKRWEEAKVFEADEDSD---KPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHP 77 (814)
T ss_pred CCcccchHHHHHHHHHHHHhcCCcccCCCCC---CCCceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeeccc
Confidence 5678999999999999999999999987765 4 59999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceee
Q psy2890 80 MGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIV 159 (893)
Q Consensus 80 ~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v 159 (893)
||||++|+|+|++|++.|.+|..|++.+++.|++||++||.++||+|++.|+||+|++++||+|.+|+++||||+++.+|
T Consensus 78 MGwdafGlPae~~A~~~~~~P~~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~~~~~V 157 (814)
T COG0495 78 MGWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPV 157 (814)
T ss_pred CcccccCchHHHHHHHhCCChHHHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHHHHHHHHCCCEEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCC-ChHHHHHHHHhhcccccceeeee
Q psy2890 160 NWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPY-WPKKVRLMQVNWIGKSKGIFLAF 238 (893)
Q Consensus 160 ~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~-~p~~~~~~~~~wi~~s~~~~i~f 238 (893)
+|||.|+|+|+|+||++|+|+|||++|+.++.+||||++|+|+++|+++| +.+++ ||+.|+.||+||||+|.|+.|.|
T Consensus 158 nwcP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l-~~l~~~wPE~Vk~mq~nWIg~s~g~~v~f 236 (814)
T COG0495 158 NWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDL-DKLATLWPETVKGMQRNWIGPSEGYEVAF 236 (814)
T ss_pred eeCCCcCCccccceeecCCcccCCCceeEeeeEEEEEEechhHHHHHhhh-hhhccCCchhHHHHHHcCcCCCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999 88884 99999999999999999999999
Q ss_pred ccccCCCCCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhch--HHHHHHHHHHhhcCcccc--ccccccc
Q psy2890 239 PHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNN--LLLQKFILEYKKNNNIES--NNLLKKS 314 (893)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~g 314 (893)
.+.+... ...+.|+||||+|++|++++++.|+|+++..++.++ ..+.+|++.+...+..++ ...+++|
T Consensus 237 ~~~~~~~--------~~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~~~~k~g 308 (814)
T COG0495 237 VVDGEEE--------IVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPAHAEKDG 308 (814)
T ss_pred ecCCccc--------ceeeeeeeccCccccCeEEEEEeCCchHHHHHhcCccchhHHHHHHHhcCCCceeeeeccCCCcc
Confidence 9863210 357999999999999999999999999999998877 788999999988877666 4567899
Q ss_pred cccceEEEcCCCCCeeeEEEecccccCCCCCcc-ccCCCCCHHHHHHHHHcCCceeeeecCCCCCccccccccccccCCc
Q psy2890 315 ILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAA-IGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKEN 393 (893)
Q Consensus 315 ~~~g~~~~~P~~~~~ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~~~g~ 393 (893)
.++|.+++||++++.||||.++||. +.+|||+ |+|||||.+|++||++|++|+..+|...++. ...+|+++|+
T Consensus 309 v~~g~~a~~p~~~e~iPi~~a~~vl-~~ygtgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~~-----~~~~~~~~g~ 382 (814)
T COG0495 309 VFLGGYAINPVNGEKIPVWIANYVL-MEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTV-----GKKVYEGEGV 382 (814)
T ss_pred eeccccccCCCCCCcCCEEEeCccc-ccccccceecCCCCCchhhHHHHhcCCCeEEEEecCCCc-----ccceeccCce
Confidence 9999999999999999999999999 9999999 9999999999999999999999999762210 1567788899
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHHcCCCCeeeEeeecceeeccccccCCccCeEEcCCCCeeecCCCCCCccCCCcc
Q psy2890 394 CYCINSCKYNNMSHKEATNAISTDLIKLGLGNKKNIFRLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETC 473 (893)
Q Consensus 394 ~~~~~s~~~~gl~~~~a~~~i~~~L~~~~~~~~~~~~~l~DW~ISRQr~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~ 473 (893)
|+||+.|+|+...+|...|+..|.+.+.++..++|++|||++|||||||+|||++||++|+.+++++++||+.||++.
T Consensus 383 --linS~~~~gl~~e~a~~~~~~~l~~~~~~q~~v~Y~lrdW~~srqRywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~ 460 (814)
T COG0495 383 --LINSGGLDGLDYEEAKVKIRCGLVKRGLGQWFVNYRLRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERV 460 (814)
T ss_pred --EeccccccCcchhHHHHHHHHhHHHhcCCceEEecccchHHHHHHHHhCCCcceeEcccCCcccCchHhcCccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC---CCcccccccccccccCCCCccceecCCcccccccccchhhhhcCCCcc-ccCCChhhhhccCCceeeecchhhHH
Q psy2890 474 VP---NNLLKENKKFLHVSCPKCNKLAFRETDTMDTFVDSSWYYMRYISPKLE-NFMIDDNKINYWMPVDQYIGGIEHAI 549 (893)
Q Consensus 474 ~~---g~~l~~~~~~~~~~c~~~g~~~~re~d~~D~WfdSsw~~~~~~~p~~~-~~~~~~~~~~~~~PvD~~igG~D~~i 549 (893)
.+ ||||..+++|++++||+ +++.|++||||+|++|||||++|.+|.+. +.++++++++||+|||+|+||+|||+
T Consensus 461 ~~~gt~~pL~~~~~W~~~s~~~--s~~~ret~Tm~~~~~sswy~~r~~d~~~~~~~~~~~e~~~yW~PVD~yigG~ehav 538 (814)
T COG0495 461 RGLGTGSPLPWDEEWVIESLPD--STAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFNYWYPVDLYIGGIEHAV 538 (814)
T ss_pred ccCCCCCCCCCCcceEEEecCC--CceeeehhhhhHhcccccccHhhcChhcCccchhcHHHHhcccChheeecchhHHH
Confidence 87 46999999999999995 88999999999999999999999999988 68899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcce
Q psy2890 550 LHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVI 629 (893)
Q Consensus 550 ~Hl~y~rf~~~~l~~~g~~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~ 629 (893)
+||+|+||||++|++.|+++.+|||++|++||||++ .+|
T Consensus 539 lHLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~--------~~g--------------------------------- 577 (814)
T COG0495 539 LHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLG--------EEG--------------------------------- 577 (814)
T ss_pred HHHHHHHHHHHHhcccCcCCCccchhhhhccceEEe--------cCC---------------------------------
Confidence 999999999999999999999999999999999994 244
Q ss_pred eccccccccCCCCccCccchhhhhCchhHHHHHHhcCCCCCCcccChhhhhHHHHHHHHHHHHHHhhhhccccccccccc
Q psy2890 630 IGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFSYILAPRIINIINLNIF 709 (893)
Q Consensus 630 ~~~~~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~~~~l~rl~n~~~~~~~~~~~~~~~~~~ 709 (893)
+||||||||+|+|+++|++||||++|+|+||++|+++|++|++++++|++|||+|+|+++........ ..
T Consensus 578 ----~KMSKSKgN~v~p~~~i~~yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~~rfL~r~~~l~~~~~~~~~--~~---- 647 (814)
T COG0495 578 ----EKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHLEKLV--EE---- 647 (814)
T ss_pred ----CccccccCCCCCHHHHHHHhCchHHHHHHHhhCChhhCCCCChhhhHHHHHHHHHHHHHHHHhhhccc--cc----
Confidence 79999999999999999999999999999999999999999999999999999999999988654110 00
Q ss_pred cCCccccCCChhHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhhcccccCCCCCcccHHHHHHHHHHHH
Q psy2890 710 HNDFSVIKFNNNQKVFRRKIHKILQQINRDIKR-IQYNTVVSGCMKIFNILERINSETKFDNNKNTNNDILLYEGMSIFL 788 (893)
Q Consensus 710 ~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~-~~f~~ai~~l~~fvn~l~~~~k~~~~~~~~~~~~~~~l~~~l~~ll 788 (893)
........++|+ ++++++.|+++++. +.|++|++.+|+|+|.+.++.... .....++.++++.++
T Consensus 648 ----~~~~~~~~~~~~---~h~~~~~v~~~~e~~~~~nt~i~~~m~l~N~l~~~~~~~-------~~~~~~l~~~l~~~v 713 (814)
T COG0495 648 ----LTKEQGKEDRWL---LHRTIKKVTEDFEARQTFNTAIAALMELLNALRKYLRRT-------EGDRKVLREALETWV 713 (814)
T ss_pred ----ccchhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------cchHHHHHHHHHHHH
Confidence 001111345554 66777788888877 999999999999999999886431 122378999999999
Q ss_pred HHhcccccchHHHHHHHhhccCCCCCeeeccCCCCChhhhhhHHHHHHHHHHhhhhcceEEEecCCCCHHHHHHHHhhCh
Q psy2890 789 RVLNPIAPHITHILWKELKYSIQQGDILNACWPKIDSLALEEEKEEVKLIIQINGKFRGHIFVKKKCTTDFIKKIVLKNK 868 (893)
Q Consensus 789 ~LL~P~~P~isEEIwq~L~~~~~~~sI~~~~wP~~d~~~~~~~~~~~~~vv~i~gk~R~~~~v~~~~~~e~i~~~~~~~~ 868 (893)
+||+||+||+|||+|+.|+. +++|..++||++|++.++ .+.+++++|+||+.|+++.++.+++++++++++++.+
T Consensus 714 ~lLaP~aPH~aEElW~~lg~---~~~v~~~~wP~~de~~l~--~~~~~~~vqvngk~r~~~~~~~~a~~~~~~~~~~~~~ 788 (814)
T COG0495 714 RLLAPFAPHIAEELWEELGN---EGFVSNAPWPEPDEEALV--EDEVEIVVQVNGKVRAREVVAADADEEKVKEIALADE 788 (814)
T ss_pred HHhcccccHHHHHHHHHhcC---CCceeeCCCCCCChhhcc--ccceEEEEEEeeEEEEEEEEcCCCCHHHHHHHHhccH
Confidence 99999999999999999996 468999999999999988 6668899999999999999999999999999999999
Q ss_pred hHHHHhcC-CCEEEEEeCCCeEEEeC
Q psy2890 869 VIQKYIIH-PPKKFFIIPNKLVNIII 893 (893)
Q Consensus 869 ~v~k~l~~-~i~kvi~vp~klvn~v~ 893 (893)
.++++|++ +++|+|+||+|+||||+
T Consensus 789 ~v~~~l~~~~~~k~i~VP~k~vn~v~ 814 (814)
T COG0495 789 EVQKFLQGKTIKKVIAVPGKPVNIVE 814 (814)
T ss_pred HHHHHHcCCCcceEEecCCcceEEeC
Confidence 99999999 99999999999999985
No 6
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-143 Score=1253.83 Aligned_cols=657 Identities=28% Similarity=0.504 Sum_probs=564.6
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCcccCCCCCCCCCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCcccccc
Q psy2890 1 MQKKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPM 80 (893)
Q Consensus 1 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~ 80 (893)
|.+.|||.++|++|+++|+++++|.+..++. .++|.|..||||+||.||||||+++++.|+++||+||+||+|+|++
T Consensus 1 ~~~~ydp~~iE~k~~~~W~~~~~f~~~~~~~---~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~p 77 (877)
T COG0525 1 LPKTYDPKEIEEKWYKKWEESGYFKPDPNED---KPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPP 77 (877)
T ss_pred CCCCCChhhhhHHHHHHHHhcCCccCCCCCC---CCCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCC
Confidence 6789999999999999999999999886533 2569999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHc----CCC------------HHHHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHHH
Q psy2890 81 GWDAFGMPAENAAILN----NTS------------PAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFL 144 (893)
Q Consensus 81 G~D~~G~pie~~a~~~----g~~------------~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~ 144 (893)
||||+|+++|..++++ |++ +.+|.+++...|++||++||+|+||+++++||||.+.++|+++|.
T Consensus 78 G~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv 157 (877)
T COG0525 78 GTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFV 157 (877)
T ss_pred CCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHH
Confidence 9999999999987653 554 578999999999999999999999999999999999999999999
Q ss_pred HHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHHH
Q psy2890 145 KMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQ 224 (893)
Q Consensus 145 ~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~ 224 (893)
+||++||||+++++|||||.|+|+|||.|| |+++..++.
T Consensus 158 ~Ly~~GlIYr~~~lVNWcP~~~TAiSd~EV------------e~~e~~g~L----------------------------- 196 (877)
T COG0525 158 RLYEKGLIYRGERLVNWCPKCRTAISDIEV------------EYKEVEGKL----------------------------- 196 (877)
T ss_pred HHHHCCceeecCCcccCCCccccchhhhhh------------ccceeeeeE-----------------------------
Confidence 999999999999999999999999999775 456554431
Q ss_pred HhhcccccceeeeeccccCCCCCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhchHHHHHHHHHHhhcCc
Q psy2890 225 VNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYKKNNN 304 (893)
Q Consensus 225 ~~wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (893)
+||+|++.++ +.+|+|+|||||||+|++||||||+|++++.+
T Consensus 197 ---------~~i~y~l~~~----------~~~i~VATTRPEtmlgdtAVaVhP~DeRYk~L------------------- 238 (877)
T COG0525 197 ---------YYIKYPLADG----------DGYLVVATTRPETLLGDTAVAVHPDDERYKHL------------------- 238 (877)
T ss_pred ---------EEEEEecCCC----------CceEEEEecCccccccceEEEECCCChhhHhh-------------------
Confidence 6899999854 46999999999999999999999999998764
Q ss_pred cccccccccccccceEEEcCCCCCeeeEEEecccccCCCCCcc-ccCCCCCHHHHHHHHHcCCceeeeecCCCCCccccc
Q psy2890 305 IESNNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAA-IGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKI 383 (893)
Q Consensus 305 ~~~~~~~~~g~~~g~~~~~P~~~~~ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~ 383 (893)
+|+.+++|++|++|||+.++||+ +++|||+ |++||||++||+++++||||+++++++ +|+
T Consensus 239 ------------vGk~v~lPl~~r~IpIiaD~~VD-~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~-dG~----- 299 (877)
T COG0525 239 ------------VGKEVILPLVGREIPIIADEYVD-PEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDE-DGR----- 299 (877)
T ss_pred ------------cCCEEecCCCCCeeeeecCcccC-CcCCCceEEecCCCCchhhhhhhcCCCCceEEECC-CCe-----
Confidence 79999999999999999999999 9999999 999999999999999999999999997 653
Q ss_pred cccccccCCccccc-cC-CCCCCCCHHHHHHHHHHHHHHcCCCCe-----------------------------------
Q psy2890 384 WKDWYIDKENCYCI-NS-CKYNNMSHKEATNAISTDLIKLGLGNK----------------------------------- 426 (893)
Q Consensus 384 ~~~~~~~~g~~~~~-~s-~~~~gl~~~~a~~~i~~~L~~~~~~~~----------------------------------- 426 (893)
|. +. |+|.||++.+||++|++.|++.|++.+
T Consensus 300 ------------in~~~~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~ 367 (877)
T COG0525 300 ------------INEEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLELAK 367 (877)
T ss_pred ------------eccCCccccCCCcHHHHHHHHHHHHHhCCCeEeeeeccccCccccCCCceeeeeecceeeEEhHhhHH
Confidence 44 44 599999999999999999999999432
Q ss_pred ---------eeEe--------------eecceeeccccccCCccCeEEcCCCCeeecCCCCCCccCCCccCCCCcccccc
Q psy2890 427 ---------KNIF--------------RLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKENK 483 (893)
Q Consensus 427 ---------~~~~--------------~l~DW~ISRQr~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~g~~l~~~~ 483 (893)
+++| +++|||||||||||||||+|||++||.+.|.++ +|+...
T Consensus 368 ~~l~~~~~g~i~f~P~~~~~~~~~W~~~i~DWcISRQlwwGh~IPvWy~~~~g~v~v~~~-~~~~~~------------- 433 (877)
T COG0525 368 KALEAVKDGKIKFVPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCKECGNVVVAEE-EPEDPA------------- 433 (877)
T ss_pred HHHHHHhcCCceEecHHHHHHHHHHHhhCcCceeeeeeecCcccceEEecCCCcEEeCCc-cccchh-------------
Confidence 1122 678999999999999999999999999988865 443211
Q ss_pred cccccccCCCCccceecCCccccccccc-chhhhhcCCCccccCCChhhhhccCCceeeecchhhHHHHHHHHHHHHHHH
Q psy2890 484 KFLHVSCPKCNKLAFRETDTMDTFVDSS-WYYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTKLM 562 (893)
Q Consensus 484 ~~~~~~c~~~g~~~~re~d~~D~WfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~~~~l 562 (893)
....|+. ..+++++|||||||+|| |+|...+||.. .+.++.++|+|+.++|.| |+|+|.+| |
T Consensus 434 --~~~~~~~--~~~~qd~DVLDTWFSS~LwPfstlgWp~~------t~~l~~fyPt~llvtG~D--IIffWvar-----m 496 (877)
T COG0525 434 --AAEKCPK--EELEQDEDVLDTWFSSSLWPFSTLGWPEE------TPDLKKFYPTDLLVTGHD--IIFFWVAR-----M 496 (877)
T ss_pred --hhccCch--hcccCCcchhhhhhhcccccccccCCCCc------chHHHhcCCCccccccch--hhHHHHHH-----H
Confidence 0133443 56899999999999998 99999999984 556888889999999988 45644444 4
Q ss_pred HHhcC-ccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceeccccccccCCC
Q psy2890 563 YNLGL-IKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKN 641 (893)
Q Consensus 563 ~~~g~-~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSKSkg 641 (893)
..+++ +.++.||+.|++||||. | ++| +|||||+|
T Consensus 497 i~~~~~~~~~~PFk~V~ihGLVr-------D-e~G-------------------------------------~KMSKS~G 531 (877)
T COG0525 497 IMRGLHLTGEVPFKDVYIHGLVR-------D-EQG-------------------------------------RKMSKSKG 531 (877)
T ss_pred HHHHHHhcCCCCccEEEEeeeEE-------c-CCC-------------------------------------CCCcccCC
Confidence 44443 67889999999999998 5 666 89999999
Q ss_pred CccCccchhhhhCchhHHHHHHhcCCCCCCcccChhhhhHHHHHHHHHHHHHHhhhhccccccccccccCCccccCCChh
Q psy2890 642 NGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNNN 721 (893)
Q Consensus 642 N~i~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~~~~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (893)
|||||.++|++||||||||++++.+.+++|++|+++.+++++||++|+||+.+|+.++....... .......+..
T Consensus 532 NvIDP~d~I~~yGaDAlRf~la~~~~~G~Di~~~~~~~~~~rnF~nKlWNa~Rfv~~~~~~~~~~-----~~~~~~~~~~ 606 (877)
T COG0525 532 NVIDPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGYRNFLNKLWNATRFVLMNLDDLGPD-----DLDLLALSLA 606 (877)
T ss_pred CcCCHHHHHHHhChHHHHHHHHhccCCCcccCcCHHHHHHHHHHHHHHHhHHHHHHhcccccCcc-----cccccccchH
Confidence 99999999999999999999999999999999999999999999999999999998743211110 0011233689
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HHHHhh----cccccCCC-CCcccHHHHHHHHHHHHHHhcccc
Q psy2890 722 QKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIFN-ILERIN----SETKFDNN-KNTNNDILLYEGMSIFLRVLNPIA 795 (893)
Q Consensus 722 D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fvn-~l~~~~----k~~~~~~~-~~~~~~~~l~~~l~~ll~LL~P~~ 795 (893)
|+||+++|+++++.++++|++|+|+.|.+++++|++ +++..+ |.+++.++ ...+++.+|+.+|+.+++||||||
T Consensus 607 drWIls~l~~~v~~v~~~ld~y~f~~a~~~ly~F~W~~fcD~YlEl~K~~l~~~~~~~~~a~~tL~~vl~~~lrLLhPfm 686 (877)
T COG0525 607 DRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAKPRLYGGEEEKRAARATLYYVLDTLLRLLHPFM 686 (877)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999994 788743 44445441 123678999999999999999999
Q ss_pred cchHHHHHHHhhccCCCCCeeeccCCCCChhhhhh-HHHHHHHHHHhh---hhcceEEEecCC
Q psy2890 796 PHITHILWKELKYSIQQGDILNACWPKIDSLALEE-EKEEVKLIIQIN---GKFRGHIFVKKK 854 (893)
Q Consensus 796 P~isEEIwq~L~~~~~~~sI~~~~wP~~d~~~~~~-~~~~~~~vv~i~---gk~R~~~~v~~~ 854 (893)
||+||||||.+.. .+||+.++||++++...++ ++..++.+++++ +++|++++++++
T Consensus 687 PfiTEei~q~l~~---~~si~~~~~P~~~~~~~d~~a~~~~~~l~~ii~~iR~~r~e~~~~~~ 746 (877)
T COG0525 687 PFITEEIWQKLPG---TESIHLASWPEVDEELIDEEAEKEFELLKEIISAIRNLRAEMNLSPS 746 (877)
T ss_pred ccchHHHHHhcCC---CCeEEeccCCCcchhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999987 4899999999998766552 345566555553 377799999887
No 7
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=8.4e-133 Score=1235.75 Aligned_cols=706 Identities=23% Similarity=0.373 Sum_probs=571.8
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCcccCCCCCCCCCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCcccccc
Q psy2890 1 MQKKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPM 80 (893)
Q Consensus 1 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~ 80 (893)
++++|||.++|++||++|+++++|++..+.+ .++++|+|++|||||||.|||||+++++++|+++||+||+||+|++++
T Consensus 7 ~~~~~~~~~iE~~~~~~W~~~~~f~~~~~~~-~~~~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~ 85 (975)
T PRK06039 7 VDSQPDFPALEEEVLKFWKENDIFEKSIENR-EGGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRA 85 (975)
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCcccCcccc-CCCCCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcC
Confidence 3578999999999999999999999865422 237899999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHc-CCC----------------HHHHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHH
Q psy2890 81 GWDAFGMPAENAAILN-NTS----------------PAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIF 143 (893)
Q Consensus 81 G~D~~G~pie~~a~~~-g~~----------------~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f 143 (893)
||||||+|||.+|++. |++ |++|+.++++.|++++++||+++||+++|.|+||.|+++++|+|
T Consensus 86 GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F 165 (975)
T PRK06039 86 GWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWAL 165 (975)
T ss_pred CcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHH
Confidence 9999999999999874 654 78999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHH
Q psy2890 144 LKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLM 223 (893)
Q Consensus 144 ~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~ 223 (893)
.+|+++||||++.++|+|||.|+|+||+.||.+|++.+
T Consensus 166 ~~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev~~~y~~~------------------------------------------ 203 (975)
T PRK06039 166 KQLYDKGLLYKGYRVVPYCPRCETPLSNHEVAQGYKDV------------------------------------------ 203 (975)
T ss_pred HHHHHCCCEEecceeeeecCCCCCCccHHHHhhccccc------------------------------------------
Confidence 99999999999999999999999999999997664422
Q ss_pred HHhhcccccceeeeeccccCCCCCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhc------hHHHHHHHH
Q psy2890 224 QVNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARN------NLLLQKFIL 297 (893)
Q Consensus 224 ~~~wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~------~~~~~~~~~ 297 (893)
.+.++||+|++.++. +.+++||||||||||||+||||||+++|+...... ...+..+.+
T Consensus 204 ------~~~~~~v~f~l~~~~---------~~~l~i~TTrP~Tl~~n~avaV~P~~~Y~~~~~~~~~yi~a~~~~~~~~~ 268 (975)
T PRK06039 204 ------KDPSVYVKFKLKGEE---------NEYLLAWTTTPWTLPSNLALAVHPDIDYVKVEGGGEVYILAEALLEKVLK 268 (975)
T ss_pred ------CCceEEEEEEecCCC---------CCEEEEEECCccccccceEEEECCCCceEEEecCCeEEEEhHHHHHHHhh
Confidence 234579999986322 57899999999999999999999999987543211 112222222
Q ss_pred HHhhcCcccccccccccc-ccceEEEcCCCC-----CeeeEEEecccccCCCCCcc-ccCCCCCHHHHHHHHHcCCceee
Q psy2890 298 EYKKNNNIESNNLLKKSI-LTQLKVLHPLTN-----QEIKVFVVNYVIEKSYGRAA-IGVPAHNKHDFYFAKKHSLLIKQ 370 (893)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~-~~g~~~~~P~~~-----~~ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~~~~~~~l~~~~ 370 (893)
...+ ...+++|. |.|++|.||++. +++||++++||+ +++|||+ |+|||||++||+++++||||+++
T Consensus 269 -----~~~~-~~~~~~G~~L~G~~~~~P~~~~~~~~~~~pii~~~~V~-~~~GTG~V~~aPahg~~D~~~~~~~~l~~~~ 341 (975)
T PRK06039 269 -----EDYE-VVETFKGSELEGLEYEPPFPYFADEKNAFRVVLADFVT-TEDGTGIVHIAPAFGEDDFEVGKKYGLPVVC 341 (975)
T ss_pred -----cccE-EEeeecCccccCCEEECCcccccCCcceeEEEecCccC-CCCCccceeeCCCCChHHHHHHHHcCCCccc
Confidence 1111 34567787 799999999973 479999999999 9999999 99999999999999999999999
Q ss_pred eecCCCCCccccccccccccCCcccccc-CCCCCCCCHHHHHHHHHHHHHHcCCCCee----------------------
Q psy2890 371 VINVKNKSYSDKIWKDWYIDKENCYCIN-SCKYNNMSHKEATNAISTDLIKLGLGNKK---------------------- 427 (893)
Q Consensus 371 vi~~~~g~~~~~~~~~~~~~~g~~~~~~-s~~~~gl~~~~a~~~i~~~L~~~~~~~~~---------------------- 427 (893)
+||+ +|+ +.+ .|+|+||.+.+|+++|++.|++.|.+.+.
T Consensus 342 ~id~-~G~-----------------~~~~~~~~~G~~v~eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~~~~~ 403 (975)
T PRK06039 342 PVDD-DGR-----------------FTEEVPDYAGKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYAT 403 (975)
T ss_pred eeCC-Cce-----------------EcCCCccccCCCHHHhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEEEEec
Confidence 9987 553 443 47899999999999999999999985221
Q ss_pred --------------------eEe---------------eecceeeccccccCCccCeEEcCCCCeeecCC--CCCCccCC
Q psy2890 428 --------------------NIF---------------RLRDWAISRQRYWGTPIPIIYCDSCGSVPVPE--KDLPVILP 470 (893)
Q Consensus 428 --------------------~~~---------------~l~DW~ISRQr~WG~pIPi~~~~~~~~v~v~~--~~lpv~lp 470 (893)
++| +++|||||||||||+|||+|+|++||.+.+.. ++|..
T Consensus 404 ~qWFi~~~~~k~~ll~~~~~i~~~P~~~~~~~~~~wl~~l~DW~ISRqr~WG~PIPiw~~~~~g~~~v~~~~~el~~--- 480 (975)
T PRK06039 404 ESWFIRVTKIKDRMLELNQKINWYPEHIKDGRFGKWLENARDWNISRNRYWGTPLPIWRCEDCGRIDVIGSIEELEE--- 480 (975)
T ss_pred CeeeEecHHHHHHHHHhhCCeEEECcccchhhHHHHHhcCccceeeeccccCCcceEEEecCCCeEEEeccHHHHHH---
Confidence 122 57899999999999999999999998765532 11100
Q ss_pred CccCCC---Cccccccccc---ccccCCCCccceecCCccccccccc-chhhhhcCCCccccCCChhhhhccCCceeeec
Q psy2890 471 ETCVPN---NLLKENKKFL---HVSCPKCNKLAFRETDTMDTFVDSS-WYYMRYISPKLENFMIDDNKINYWMPVDQYIG 543 (893)
Q Consensus 471 ~~~~~g---~~l~~~~~~~---~~~c~~~g~~~~re~d~~D~WfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~PvD~~ig 543 (893)
..| .+.+.+++|+ ...|| ||+.++|++|||||||||+ |||+.+++|.++ ++.|++|+|+|++++
T Consensus 481 ---~~g~~~~~~~l~~~~~d~~~~~~~-~~~~~~r~~dVlDvWFdSg~~p~a~~~~p~~~-----~~~f~~~~Pad~~~~ 551 (975)
T PRK06039 481 ---LFGEDVEPIDLHRPYVDEVTLPCP-DGGTMRRVPDVIDVWFDSGSMPYAQLHYPFEN-----KEWFEKHFPADFIVE 551 (975)
T ss_pred ---HhCCCcchhhhcccccccccccCC-CCcceEeccccccceeecCCccHHHhCCcccC-----hhhhhccCCceEEEe
Confidence 001 2333344554 35677 4788999999999999997 799999999752 345788999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcC-ccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeee
Q psy2890 544 GIEHAILHLLYARFWTKLMYNLGL-IKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILK 622 (893)
Q Consensus 544 G~D~~i~Hl~y~rf~~~~l~~~g~-~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~ 622 (893)
|+||. |||...|...|. +.+.+||+++++||||+ | .+|
T Consensus 552 G~Di~-------r~Wf~~l~~~~~~~~~~~pfk~v~~hG~Vl-------d-~~G-------------------------- 590 (975)
T PRK06039 552 GIDQT-------RGWFYTLLALSTALFDRPPYKNVLVHGHVL-------D-EDG-------------------------- 590 (975)
T ss_pred chhhH-------hhHHHHHHHHHHHhcCCCcccEEEEeeeEE-------C-CCC--------------------------
Confidence 99984 344444444443 55678999999999998 4 566
Q ss_pred cCCCcceeccccccccCCCCccCccchhhhhCchhHHHHHHhcCCCCCCcccChhh-hhHHHHHHHHHHHHHHhhhhccc
Q psy2890 623 LDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIG-IEGAYRFLNRVWNFSYILAPRII 701 (893)
Q Consensus 623 ~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~~~~~-i~~~~~~l~rl~n~~~~~~~~~~ 701 (893)
+|||||+||+|+|.++|++||||++|||+++.+++++|++|+++. +++++++++++||+++++.. +.
T Consensus 591 -----------~KMSKSlGNvIdP~dli~~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~l~kl~N~~~f~~~-y~ 658 (975)
T PRK06039 591 -----------QKMSKSLGNYVDPFEVFDKYGADALRWYLLSSSAPWEDLRFSEDGVREVVRKFLLTLWNVYSFFVL-YA 658 (975)
T ss_pred -----------CCcCCCCCCcCCHHHHHHHhChHHHHHHHHhCCCCCCCceechhHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 899999999999999999999999999999999889999999999 88889999999999988753 22
Q ss_pred cccccccccCCccccCCChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh----cccccCCCC---Cc
Q psy2890 702 NIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIFNILERIN----SETKFDNNK---NT 774 (893)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fvn~l~~~~----k~~~~~~~~---~~ 774 (893)
+...+.+.........++..|+||+++++.++++++++|++|+|+.|++.+++|++++++++ +.+.|...+ ..
T Consensus 659 ~~~~~~~~~~~~~~~~~~~~D~wils~l~~li~~v~~a~e~y~~~~A~~~l~~f~~~lsn~Yi~~~k~r~w~~~~~~~~~ 738 (975)
T PRK06039 659 NLDGFDYPPAEDEVDSLNELDRWILSRLNSLVKEVTEALDNYDITKAARAIRDFVDDLSNWYIRRSRRRFWKEEDDPDKL 738 (975)
T ss_pred hhccCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcHHHH
Confidence 11111100000112345688999999999999999999999999999999999999887743 223443321 23
Q ss_pred ccHHHHHHHHHHHHHHhcccccchHHHHHHHhhccCCCCCeeeccCCCCChhhhh-hHHHHHHHHHHh---hhhcceEEE
Q psy2890 775 NNDILLYEGMSIFLRVLNPIAPHITHILWKELKYSIQQGDILNACWPKIDSLALE-EEKEEVKLIIQI---NGKFRGHIF 850 (893)
Q Consensus 775 ~~~~~l~~~l~~ll~LL~P~~P~isEEIwq~L~~~~~~~sI~~~~wP~~d~~~~~-~~~~~~~~vv~i---~gk~R~~~~ 850 (893)
+++.+|+.+|+.+++||+|||||+|||||+.|+.....+||+.+.||++++..++ ..+..++.+.+| .+++|.+.+
T Consensus 739 ~a~~~L~~~L~~l~~lLaPf~Pf~aEei~~~L~~~~~~~sv~~~~~P~~~~~~~d~~le~~~~~~~~ii~~~r~~r~~~~ 818 (975)
T PRK06039 739 AAYATLYTVLETLSRLAAPFTPFIAEEIYQNLTREDAPESVHLADWPEVDESLIDEELEEAMDLVREIVSLGRSARKKAG 818 (975)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhccccCCCCeeEecCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5678999999999999999999999999999984212579999999999876554 223445544444 446666666
Q ss_pred ecCC
Q psy2890 851 VKKK 854 (893)
Q Consensus 851 v~~~ 854 (893)
++..
T Consensus 819 i~~~ 822 (975)
T PRK06039 819 IKVR 822 (975)
T ss_pred CCCC
Confidence 6544
No 8
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=1.1e-130 Score=1222.83 Aligned_cols=699 Identities=23% Similarity=0.355 Sum_probs=557.6
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCcccCCC-CCCCCCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccc
Q psy2890 1 MQKKYNFVEIEKITQCYWNKINAYQTTEN-DTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMP 79 (893)
Q Consensus 1 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~-~~~~~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~ 79 (893)
|.+.|||+++|++||++|+++++|++... ..+.++++|+|++|||||||.|||||+++++++|+++||+||+|++|+|+
T Consensus 24 ~~~~yd~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~ 103 (995)
T PTZ00419 24 MAASYDPKEVESGWYEWWEKSGFFKPAEDAKSLNSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWV 103 (995)
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCcccCccccccCCCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence 45789999999999999999999998521 00123788999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHH-----HcCCC------------HHHHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHH
Q psy2890 80 MGWDAFGMPAENAAI-----LNNTS------------PAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWI 142 (893)
Q Consensus 80 ~G~D~~G~pie~~a~-----~~g~~------------~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~ 142 (893)
+||||||+|++.+++ +.|.+ |++|++++++.|+++|++||+++||+++++|+||.|.++++++
T Consensus 104 ~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~ 183 (995)
T PTZ00419 104 PGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEA 183 (995)
T ss_pred CCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHH
Confidence 999999999976643 33443 4689999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeec-eeeEEecchHHHHHHHHHhhCCCChHHHH
Q psy2890 143 FLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIP-MYYAKITNYAEELLEYVKKKLPYWPKKVR 221 (893)
Q Consensus 143 f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~-~~~~~l~~~~~~l~~~~~~~~~~~p~~~~ 221 (893)
|.+|+++||||++.++|+|||.|+|+|||.||. +++.. ..+++++.|.+.+.
T Consensus 184 F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EVe------------~~~~~~~~~~~~~~~~~~~~--------------- 236 (995)
T PTZ00419 184 FVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVE------------FEEIEKPTKITIPGYDKKVE--------------- 236 (995)
T ss_pred HHHHHHCCCEEecceeeecCCCCCCCCchhhcc------------cccccccceeeccccccccc---------------
Confidence 999999999999999999999999999998874 33332 34567766544321
Q ss_pred HHHHhhcccccceeeeeccccCCCCCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhchHHHHHHHHHHhh
Q psy2890 222 LMQVNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYKK 301 (893)
Q Consensus 222 ~~~~~wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~ 301 (893)
...-++|+|++.+++ +.+|+|||||||||+|++||||||+++++..
T Consensus 237 --------~g~l~~i~f~l~~~~---------~~~l~vaTTrPeTl~g~~avav~P~d~~y~~----------------- 282 (995)
T PTZ00419 237 --------VGVLWHFAYPLEDSG---------QEEIVVATTRIETMLGDVAVAVHPKDERYKK----------------- 282 (995)
T ss_pred --------cceeEEEEEeecCCC---------CcEEEEEeCCcchhhhCeEEEECCCCcHHHH-----------------
Confidence 001147999886321 2389999999999999999999999987643
Q ss_pred cCccccccccccccccceEEEcCC-CCCeeeEEEec-ccccCCCCCcc-ccCCCCCHHHHHHHHHcCCceeeeecCCCCC
Q psy2890 302 NNNIESNNLLKKSILTQLKVLHPL-TNQEIKVFVVN-YVIEKSYGRAA-IGVPAHNKHDFYFAKKHSLLIKQVINVKNKS 378 (893)
Q Consensus 302 ~~~~~~~~~~~~g~~~g~~~~~P~-~~~~ipv~~~~-~V~~~~~GTG~-~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~ 378 (893)
+.|++|.||+ +++.+||++++ ||+ +++|||+ |++||||++||+++++||||++++|++ +|+
T Consensus 283 --------------l~G~~~~~Pl~~~~~ipii~~~~~V~-~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~i~~-~G~ 346 (995)
T PTZ00419 283 --------------LHGKELIHPFIPDRKIPIIADDELVD-MEFGTGAVKITPAHDPNDYEIAKRHNLPFINIFTL-DGK 346 (995)
T ss_pred --------------hcCCEEECCccCCCEEEEEeCCcccC-CCcCCCCeEeCCCCChHHHHHHHHcCCCeeeeeCC-Cce
Confidence 4799999999 89999999999 999 9999999 999999999999999999999999987 553
Q ss_pred ccccccccccccCCcccc-ccCCCCCCCCHHHHHHHHHHHHHHcCCCCeeeEe---------------------------
Q psy2890 379 YSDKIWKDWYIDKENCYC-INSCKYNNMSHKEATNAISTDLIKLGLGNKKNIF--------------------------- 430 (893)
Q Consensus 379 ~~~~~~~~~~~~~g~~~~-~~s~~~~gl~~~~a~~~i~~~L~~~~~~~~~~~~--------------------------- 430 (893)
| .++|+|.|+++.+||++|++.|++.|++.+...|
T Consensus 347 -----------------~~~~~~~~~Gl~~~~ar~~ii~~L~~~g~l~~~~~~~~~~p~~~R~~~~ie~~~~~QWFi~~~ 409 (995)
T PTZ00419 347 -----------------INENGGEFAGMHRFDCRRKIEEELKEMGLLRDKVPNPMRLPRCSRSGDIVEPMLIPQWYVNCK 409 (995)
T ss_pred -----------------EcCCCcccCCCCHHHHHHHHHHHHHhcCCEEeeEEeecCCCEeCCCCCEEEEEecCeeeEecH
Confidence 4 3578999999999999999999999996432211
Q ss_pred -------------------------------eecceeeccccccCCccCeEEcCCCCeeecCCCCCCccCCCccCCCCcc
Q psy2890 431 -------------------------------RLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLL 479 (893)
Q Consensus 431 -------------------------------~l~DW~ISRQr~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~g~~l 479 (893)
+++|||||||||||||||+|||++||.+++++...+..+..... .++
T Consensus 410 ~~~~~al~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 487 (995)
T PTZ00419 410 DMAKRAVEAVRNGELKIIPSSHENVWYHWLENIQDWCISRQLWWGHRIPAYRVISKGPETDPSDEEPWVVARSEE--EAL 487 (995)
T ss_pred HHHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCceeeEEEeCCCCccccCCCCceEEEcCCHH--HHH
Confidence 68999999999999999999999998654433332222111000 011
Q ss_pred cccccccccccCCCCccceecCCccccccccc-chhhhhcCCCccccCCChhhhhccCCceeeecchhhHHHHHHHHHHH
Q psy2890 480 KENKKFLHVSCPKCNKLAFRETDTMDTFVDSS-WYYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFW 558 (893)
Q Consensus 480 ~~~~~~~~~~c~~~g~~~~re~d~~D~WfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~ 558 (893)
.....+ ..|+.|+..++|++|||||||||+ ||+..+++|.+ .+++++|||+|++++|.|+ +|+|++|+
T Consensus 488 ~~~~~~--~~~~~~~~~~~~~~DVlDtWFdS~l~p~~~~g~p~~------~~~~~~~~P~d~~~~G~Di--i~~W~arm- 556 (995)
T PTZ00419 488 EKAKKK--FGLSEEDFELEQDEDVLDTWFSSGLFPFSTLGWPDQ------TDDLQRFFPTSLLETGSDI--LFFWVARM- 556 (995)
T ss_pred hhhccc--cCCccccCCeEECCceEEEEEeCCHHHHHHhCCCCC------hHHHhhcCCCcEEEechhH--HhHHHHHH-
Confidence 111111 235567778999999999999998 67788889973 3568999999999999884 56665554
Q ss_pred HHHHHHhcCccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceecccccccc
Q psy2890 559 TKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSK 638 (893)
Q Consensus 559 ~~~l~~~g~~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSK 638 (893)
+|.... +.+.+||++|++||||+ | .+| +||||
T Consensus 557 --~~~~~~-~~~~~Pfk~v~~HG~v~-------d-~~G-------------------------------------~KMSK 588 (995)
T PTZ00419 557 --VMMSLH-LTDKLPFKTVFLHAMVR-------D-SQG-------------------------------------EKMSK 588 (995)
T ss_pred --HHHHHH-hcCCCChHHHhccceEE-------C-CCC-------------------------------------CCccc
Confidence 233332 45689999999999998 5 566 89999
Q ss_pred CCCCccCccchhh-------------------------------------hhCchhHHHHHHhcCCCCCCcccChhhhhH
Q psy2890 639 SKNNGIDPQTQIN-------------------------------------TYGADSTRLFIIFSAPPEKNLEWSDIGIEG 681 (893)
Q Consensus 639 SkgN~i~p~~ii~-------------------------------------~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~ 681 (893)
|+||||||.++|+ +||||++|||+++.++.++|++|+++.+.+
T Consensus 589 SlGNvIdP~~ii~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~~~~~Di~~~~~~v~~ 668 (995)
T PTZ00419 589 SKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNGIPECGTDALRFGLLAYTQQGRNINLDINRVVG 668 (995)
T ss_pred CCCCcCChHHHhcccchhhHHHhhhccccchhhhhhHhhhhhccCCCCCcccCcHHHHHHHHhcCCCCCCccccHHHHHH
Confidence 9999999999999 899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccccccc-cccccC-CccccCCChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HH
Q psy2890 682 AYRFLNRVWNFSYILAPRIINIIN-LNIFHN-DFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIF-NI 758 (893)
Q Consensus 682 ~~~~l~rl~n~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fv-n~ 758 (893)
+++|++++||+++++.++...... ...... ......+...|+||+++++.++++++++|++|+|+.|++.+++|+ ++
T Consensus 669 ~~~f~nklwN~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~wIls~L~~~i~~v~~~~e~y~f~~A~~~i~~F~~~~ 748 (995)
T PTZ00419 669 YRHFCNKLWNAVKFALMKLLKDFNLPNSTLFKPNNVESLPWEDKWILHRLNVAIKEVTEGFKEYDFSEATQATYNFWLYE 748 (995)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 999999999999998753221100 000000 000123457899999999999999999999999999999999996 56
Q ss_pred HHHhh----cccccCCCC---CcccHHHHHHHHHHHHHHhcccccchHHHHHHHhhcc-CCCCCeeeccCCCCChhhhh-
Q psy2890 759 LERIN----SETKFDNNK---NTNNDILLYEGMSIFLRVLNPIAPHITHILWKELKYS-IQQGDILNACWPKIDSLALE- 829 (893)
Q Consensus 759 l~~~~----k~~~~~~~~---~~~~~~~l~~~l~~ll~LL~P~~P~isEEIwq~L~~~-~~~~sI~~~~wP~~d~~~~~- 829 (893)
+++.+ +.+.+...+ ...++.+|+.+++.+++||+|||||+|||||+.|+.. ..++||+.++||.+++...+
T Consensus 749 ~~n~Yie~~K~~l~~~~~~~~~~~~~~~L~~vL~~~l~LL~PfmPfitEElw~~L~~~~~~~~si~~~~~P~~~~~~~d~ 828 (995)
T PTZ00419 749 LCDVYLELIKPRLSKQSDGERKQHAQDVLHTVLDIGLRLLHPMMPFITEELYQRLPNYLRKSESISIAKYPQPNPGWNNE 828 (995)
T ss_pred hHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhccCCCCCeeeccCCCCCCcccCCH
Confidence 76643 222211112 1357889999999999999999999999999999742 12469999999998765444
Q ss_pred hHHHHHHHHHHhhh---hcceEEEecCC
Q psy2890 830 EEKEEVKLIIQING---KFRGHIFVKKK 854 (893)
Q Consensus 830 ~~~~~~~~vv~i~g---k~R~~~~v~~~ 854 (893)
..+..++.+.++.. ++|++.+++++
T Consensus 829 ~~e~~~~~~~~ii~~iR~~r~~~~i~~~ 856 (995)
T PTZ00419 829 ALDEEMKIIMSIVKSIRSLIATLGIPNK 856 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 22455555555543 56677777654
No 9
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.7e-131 Score=1210.38 Aligned_cols=696 Identities=21% Similarity=0.321 Sum_probs=553.8
Q ss_pred CCCCchHHHHHHHHHHHhCCCcccCCCCCCCCCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCcccccccc
Q psy2890 3 KKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGW 82 (893)
Q Consensus 3 ~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~ 82 (893)
.++|+.++|++||++|+++++|+...+.+ .++++|+|++||||+||.|||||++|++++|+++||+||+||+|++++||
T Consensus 17 m~~~l~~~E~~~~~~W~~~~~~~~~~~~~-~~~~~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~ 95 (912)
T PRK05743 17 MRANLPKREPEILKRWEENDLYQKIREAN-KGKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGW 95 (912)
T ss_pred CCCChHHhhHHHHHHHHHCCCccccchhc-CCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCc
Confidence 36999999999999999999999754321 23788999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHc------CCCH-------HHHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHHHHHHhc
Q psy2890 83 DAFGMPAENAAILN------NTSP-------AKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKR 149 (893)
Q Consensus 83 D~~G~pie~~a~~~------g~~~-------~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~ 149 (893)
||||+|||.+|+++ ++++ ++|++++++.|+++|++||+++||+++|.|++|.|.++++++|.+|+++
T Consensus 96 D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~~~ 175 (912)
T PRK05743 96 DCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKK 175 (912)
T ss_pred CCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHHHC
Confidence 99999999999885 5554 4699999999999999999999999999999999999999999999999
Q ss_pred CcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHHHHhhcc
Q psy2890 150 GIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIG 229 (893)
Q Consensus 150 Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~wi~ 229 (893)
|+||++.++|+|||.|+|+||++||.. ++ +
T Consensus 176 Gliy~~~~~v~w~p~~~TaLad~Evey------------~~--------------------------------------~ 205 (912)
T PRK05743 176 GYLYKGLKPVYWCPDCGSALAEAEVEY------------HD--------------------------------------K 205 (912)
T ss_pred CCEEecceeEecCCCcCCCchhhHhhc------------cc--------------------------------------c
Confidence 999999999999999999999988752 21 1
Q ss_pred cccceeeeeccccCCCCCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhchH--HHHHHHHHHhhcCcccc
Q psy2890 230 KSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNL--LLQKFILEYKKNNNIES 307 (893)
Q Consensus 230 ~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 307 (893)
+|.++||+|++.+.. ....+ .+.+++||||||||||||+||||||+++|+........ ...++++++........
T Consensus 206 ~s~~~yv~f~l~~~~--~~~~~-~~~~l~i~TTrP~Tl~~n~aiav~p~~~Y~~~~~~~~~~i~a~~~~~~~~~~~~~~~ 282 (912)
T PRK05743 206 TSPSIYVAFPVVDGK--LAAAF-KDASLVIWTTTPWTLPANQAIAVHPEFDYVLVEVEGEKLIVAKDLVESVLERFGWED 282 (912)
T ss_pred cCceEEEEEEecCcc--hhccc-CCCEEEEEeCCChhhhhCeEEEECCCCeeEEEEcCCCEEEEeHHhHHHHHHhhCCcc
Confidence 356689999986321 00000 24689999999999999999999999998744332100 01223333322211111
Q ss_pred --cccccccc-ccceEEEcCCCCCeeeEEEecccccCCCCCcc-ccCCCCCHHHHHHHHHcCCceeeeecCCCCCccccc
Q psy2890 308 --NNLLKKSI-LTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAA-IGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKI 383 (893)
Q Consensus 308 --~~~~~~g~-~~g~~~~~P~~~~~ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~ 383 (893)
...+++|. |.|++|.||++++++||+.++||+ +++|||+ |+|||||++||+++++|||+++++||+ +|+
T Consensus 283 ~~~~~~~~G~~l~g~~~~~Pl~~~~~pvi~~~~V~-~~~GTG~Vh~aPahg~~Dy~~~~~~~L~~~~~vd~-~G~----- 355 (912)
T PRK05743 283 YEVLATFKGKELEGLVAQHPFYDRDSPVILGDHVT-LDAGTGLVHTAPGHGEDDYVVGQKYGLEVLNPVDD-DGR----- 355 (912)
T ss_pred eEEEEEechHhhcCCEEECCCCCCeeeEeCCCccC-CCCCcCeEEeCCCCCHHHHHHHHHcCCCcccccCC-Cce-----
Confidence 34567787 799999999999999999999999 9999999 999999999999999999999999986 553
Q ss_pred cccccccCCcccccc-CCCCCCCCHHHHHHHHHHHHHHcCCC----------------CeeeEee---------------
Q psy2890 384 WKDWYIDKENCYCIN-SCKYNNMSHKEATNAISTDLIKLGLG----------------NKKNIFR--------------- 431 (893)
Q Consensus 384 ~~~~~~~~g~~~~~~-s~~~~gl~~~~a~~~i~~~L~~~~~~----------------~~~~~~~--------------- 431 (893)
+.+ .|+|.|+.+.+|+++|++.|++.|.+ +..+.|+
T Consensus 356 ------------~~~~~~~~~Gl~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~~QWFi~~~~~~~k 423 (912)
T PRK05743 356 ------------YTEEAPLFAGLFVFKANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISMDKKGLR 423 (912)
T ss_pred ------------EecCCcccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCeecCCCCEEEEEecCcccEeCChHHHH
Confidence 433 47899999999999999999999985 2233332
Q ss_pred ---------------------------ecceeeccccccCCccCeEEcCCCCeeecCCCCCCccCCCccCC-CCcccccc
Q psy2890 432 ---------------------------LRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVP-NNLLKENK 483 (893)
Q Consensus 432 ---------------------------l~DW~ISRQr~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~-g~~l~~~~ 483 (893)
++|||||||||||+|||+|||++||.+.++. +++..+++.+.- | ..
T Consensus 424 ~~~l~~~~~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP~~~~~~~g~~~~~~-~~~~~i~~~~~~~g-----~~ 497 (912)
T PRK05743 424 EQALKAIEKVKWIPAWGKNRIESMVENRPDWCISRQRTWGVPIPIFYHKETGELHPTP-ELIEHVAKLFEKEG-----ID 497 (912)
T ss_pred HHHHHHHcccEEEChHHHHHHHHHHhcCcCccccccceeCceEEEEEECCCCcEeecH-HHHHHHHHHHHhhC-----Cc
Confidence 4899999999999999999999999877643 333322221111 2 13
Q ss_pred ccccc----ccCCCCccceecCCccccccccc-chhhhhcCCCccccCCChhhhhccCCceeeecchhhHHHHHHHHHHH
Q psy2890 484 KFLHV----SCPKCNKLAFRETDTMDTFVDSS-WYYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFW 558 (893)
Q Consensus 484 ~~~~~----~c~~~g~~~~re~d~~D~WfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~ 558 (893)
.|.+. .||.|+..+.|++|||||||||+ |++....+ + .++|+|+|+|++|+||... ||.
T Consensus 498 ~W~~~~~~~~~~~~~~~~~~~~DvlDvWfdSg~s~~~~~~~---------~--~~~~~P~Dl~~~G~Di~r~-----Wf~ 561 (912)
T PRK05743 498 AWFELDAKELLPDEADEYEKETDILDVWFDSGSSHAAVLEQ---------R--PELGYPADLYLEGSDQHRG-----WFQ 561 (912)
T ss_pred cccccCHHHhcCCcccCEEECCchhhhhhhhCCCHHHHhcC---------c--cccCCCceEEEecccccch-----HHH
Confidence 44432 36778889999999999999995 33333221 1 1268999999999999532 233
Q ss_pred HHHHHHhcCccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceecccccccc
Q psy2890 559 TKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSK 638 (893)
Q Consensus 559 ~~~l~~~g~~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSK 638 (893)
+.++.... +.+.+||++|++||||+ | .+| +||||
T Consensus 562 ~~l~~~~~-~~g~~P~k~vl~HG~vl-------d-~~G-------------------------------------~KMSK 595 (912)
T PRK05743 562 SSLLTSVA-TRGKAPYKQVLTHGFTV-------D-GKG-------------------------------------RKMSK 595 (912)
T ss_pred HHHHHHHH-hcCCCccceeEEeeeEE-------C-CCC-------------------------------------CCCCC
Confidence 44444443 46789999999999999 4 566 89999
Q ss_pred CCCCccCccchhhhhCchhHHHHHHhcCCCCCCcccChhhhhHHHHHHHHHHHHHHhhhhccccccccccccCCccccCC
Q psy2890 639 SKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHNDFSVIKF 718 (893)
Q Consensus 639 SkgN~i~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~~~~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (893)
|+||+|+|.++|++||||++|||+++ +++++|++|+++.++++.+++++|||+++++..++. .+.+.....+...+
T Consensus 596 SlGNvIdP~~ii~~yGaDalR~~ll~-~~~~~D~~~s~~~l~~~~~~~~kl~N~~rf~~~nl~---~~~~~~~~~~~~~l 671 (912)
T PRK05743 596 SLGNVIDPQDVIKKYGADILRLWVAS-TDYSGDVRISDEILKQVAEAYRRIRNTLRFLLGNLN---DFDPAKDAVPYEEL 671 (912)
T ss_pred CCCCcCCHHHHHHhcChHHHHHHHHh-cCCCCCeeecHHHHHHHHHHHHHHHHHHHHHHhCcc---CCCcccccCCchhC
Confidence 99999999999999999999999997 788999999999999999999999999999876332 11110000012245
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HHHHhh----cccccCCCC----CcccHHHHHHHHHHHHH
Q psy2890 719 NNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIFN-ILERIN----SETKFDNNK----NTNNDILLYEGMSIFLR 789 (893)
Q Consensus 719 ~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fvn-~l~~~~----k~~~~~~~~----~~~~~~~l~~~l~~ll~ 789 (893)
...|+|+++++++++++++++|++|+|++|++.+++|++ ++++++ +.++|.... ..+++.+|+.+++.+++
T Consensus 672 ~~~D~~il~~l~~~~~~v~~~~e~~~f~~a~~~l~~f~~~~ls~~Yie~~K~rly~~~~~~~~r~~~~~vL~~~l~~l~~ 751 (912)
T PRK05743 672 LELDRWALHRLAELQEEILEAYENYDFHKVYQKLHNFCSVDLSAFYLDIIKDRLYTDAADSLARRSAQTALYHILEALVR 751 (912)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhhhceeeheeccHhhhcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999995 887643 445554321 23567899999999999
Q ss_pred HhcccccchHHHHHHHhhccCCCCCeeeccCCCCChhhhh-hHHHHHHHHHHhhhh
Q psy2890 790 VLNPIAPHITHILWKELKYSIQQGDILNACWPKIDSLALE-EEKEEVKLIIQINGK 844 (893)
Q Consensus 790 LL~P~~P~isEEIwq~L~~~~~~~sI~~~~wP~~d~~~~~-~~~~~~~~vv~i~gk 844 (893)
||+|||||+|||||++|+.. +++||+.+.||++++...+ ..++.++.+++++++
T Consensus 752 lLaPi~P~~aEelw~~l~~~-~~~sv~~~~wP~~~~~~~~~~~~~~~~~~~~~r~~ 806 (912)
T PRK05743 752 WLAPILSFTAEEIWQYLPGE-REESVFLEEWPEVPELADDEELLAKWEELLEVRDE 806 (912)
T ss_pred HHhhhhHHHHHHHHHhcccC-CCCceEEecCCCCccccCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999621 2579999999998876543 224566777765443
No 10
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=1.7e-129 Score=1203.17 Aligned_cols=685 Identities=24% Similarity=0.361 Sum_probs=545.1
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCcccCCCCCCCCCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCcccccc
Q psy2890 1 MQKKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPM 80 (893)
Q Consensus 1 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~ 80 (893)
|.+.|||.++|++||++|+++++|++..+.+ +++|+|++||||+||.|||||+++++++|+++||+||+||+|+|++
T Consensus 96 ~~~~yd~~~iE~~w~~~W~~~~~f~~~~~~~---~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~ 172 (1066)
T PLN02381 96 MAKQYSPSAVEKSWYAWWEKSGYFGADAKSS---KPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVP 172 (1066)
T ss_pred cccCCCHHHHHHHHHHHHHHCCCccCCccCC---CCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccC
Confidence 4578999999999999999999999865434 7889999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHH-----cCCC------------HHHHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHH
Q psy2890 81 GWDAFGMPAENAAIL-----NNTS------------PAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIF 143 (893)
Q Consensus 81 G~D~~G~pie~~a~~-----~g~~------------~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f 143 (893)
||||||+|++.++++ .|.+ |++|+.++++.|+++|++||+++||++.|+|+||.|+++++++|
T Consensus 173 G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F 252 (1066)
T PLN02381 173 GVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAF 252 (1066)
T ss_pred CCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHH
Confidence 999999999998865 3543 56899999999999999999999999999999999999999999
Q ss_pred HHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHH
Q psy2890 144 LKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLM 223 (893)
Q Consensus 144 ~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~ 223 (893)
.+|+++||||++.++|+|||.|+|+||+.||. +++... .. + ..+++|++.+
T Consensus 253 ~~L~~~GlIyr~~~~VnWcP~~~TaLSd~EVe------------y~d~~~----------~s---~-~~~~~~~~~~--- 303 (1066)
T PLN02381 253 VRLYKEGLIYRDIRLVNWDCTLRTAISDVEVD------------YIDIKE----------RT---L-LKVPGYDKPV--- 303 (1066)
T ss_pred HHHHHCCCEEeccccccCCCCCCCCccHHHhh------------hhcccc----------ch---h-hcccCCCcce---
Confidence 99999999999999999999999999998874 222110 00 1 1334455432
Q ss_pred HHhhcccccc--eeeeeccccCCCCCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhchHHHHHHHHHHhh
Q psy2890 224 QVNWIGKSKG--IFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYKK 301 (893)
Q Consensus 224 ~~~wi~~s~~--~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~ 301 (893)
+.| ++++|++.++ +.+++|||||||||+|++||+|||+++++..
T Consensus 304 -------~~g~~~~~~Y~l~~~----------~~~i~vATtRpEti~g~~avaV~P~d~ry~~----------------- 349 (1066)
T PLN02381 304 -------EFGVLTSFAYPLEGG----------LGEIVVATTRIETMLGDTAIAIHPDDERYKH----------------- 349 (1066)
T ss_pred -------eeEEEEEEEEEecCC----------CCEEEEecCCHHHHhcccceeeCCCCcchhh-----------------
Confidence 122 3466677622 3579999999999999999999999987543
Q ss_pred cCccccccccccccccceEEEcCCCCCeeeEEEec-ccccCCCCCcc-ccCCCCCHHHHHHHHHcCCceeeeecCCCCCc
Q psy2890 302 NNNIESNNLLKKSILTQLKVLHPLTNQEIKVFVVN-YVIEKSYGRAA-IGVPAHNKHDFYFAKKHSLLIKQVINVKNKSY 379 (893)
Q Consensus 302 ~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipv~~~~-~V~~~~~GTG~-~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~ 379 (893)
+.|++|.||++++.+||+.++ ||+ +++|||+ |++||||++||+++++||||++++|++ +|.
T Consensus 350 --------------L~G~~~~~Pl~~~~ipIi~d~~~Vd-~e~GTG~V~i~PaHd~~Dy~~~~~~~L~~i~~id~-~G~- 412 (1066)
T PLN02381 350 --------------LHGKFAVHPFNGRKLPIICDAILVD-PNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTD-DGK- 412 (1066)
T ss_pred --------------hCCCEEECCCCCCEEEEEECCcccc-ccCCCCcEEecCCCChHHHHHHHHcCCCeeeeeCC-Cce-
Confidence 479999999999999999864 999 9999999 999999999999999999999999987 552
Q ss_pred cccccccccccCCcccccc-C-CCCCCCCHHHHHHHHHHHHHHcCCCC--------------------------------
Q psy2890 380 SDKIWKDWYIDKENCYCIN-S-CKYNNMSHKEATNAISTDLIKLGLGN-------------------------------- 425 (893)
Q Consensus 380 ~~~~~~~~~~~~g~~~~~~-s-~~~~gl~~~~a~~~i~~~L~~~~~~~-------------------------------- 425 (893)
+.. . ++|.||++.+||++|++.|++.|++.
T Consensus 413 ----------------~~~~~~~~~~Gl~~~eAr~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~~ 476 (1066)
T PLN02381 413 ----------------INSNGGSEFAGMPRFAAREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNCS 476 (1066)
T ss_pred ----------------eCCCCccccCCCCHHHHHHHHHHHHHhCCCEecceeeecCCCeeCCCCceEEEeecccceEEch
Confidence 332 2 37999999999999999999999853
Q ss_pred ---------------eeeEe--------------eecceeeccccccCCccCeEEcCCCC-eeecCCCCCCccCCCccCC
Q psy2890 426 ---------------KKNIF--------------RLRDWAISRQRYWGTPIPIIYCDSCG-SVPVPEKDLPVILPETCVP 475 (893)
Q Consensus 426 ---------------~~~~~--------------~l~DW~ISRQr~WG~pIPi~~~~~~~-~v~v~~~~lpv~lp~~~~~ 475 (893)
.++.| +++|||||||||||||||+|||+.+. .+..... ..+...
T Consensus 477 ~l~~~al~av~~~~~~~i~~~P~~~~~~~~~wl~n~~DWcISRQr~WG~pIPiw~~~~~~~~~~~~g~------~~~~~~ 550 (1066)
T PLN02381 477 SMAKQALDAAIDGENKKLEFIPKQYLAEWKRWLENIRDWCISRQLWWGHRIPAWYVTLEDDQLKELGS------YNDHWV 550 (1066)
T ss_pred HHHHHHHHHHhhccCCceEEEChHHHHHHHHHHhcCccceeeeecccCCccceEEeccChhhcccCCc------ccceEE
Confidence 11222 68999999999999999999996211 0000000 000000
Q ss_pred -CCcccccccccccccCCC-Cc--cceecCCccccccccc-chhhhhcCCCccccCCChhhhhccCCceeeecchhhHHH
Q psy2890 476 -NNLLKENKKFLHVSCPKC-NK--LAFRETDTMDTFVDSS-WYYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAIL 550 (893)
Q Consensus 476 -g~~l~~~~~~~~~~c~~~-g~--~~~re~d~~D~WfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~ 550 (893)
+.+. .+.....|+.| |. .++|++|||||||||| |+++.+++|+ +.+++++|||+|++++|.|+ +
T Consensus 551 ~~~~~---~~~~~~~~~~~~~~~~~~~rd~DVlDtWF~Sg~~p~~~lg~P~------~~~~~~~~~P~d~~~~G~Di--i 619 (1066)
T PLN02381 551 VARNE---SDALLEASQKFPGKKFELSQDPDVLDTWFSSGLFPLSVLGWPD------DTDDLKAFYPTSVLETGHDI--L 619 (1066)
T ss_pred Eccch---HhhcchhhcccCCCccceeecCceeeEEEeCCchHHHHhcCCC------CHHHHhccCCCeeeeecchh--h
Confidence 0000 11112223333 33 4999999999999998 7888888987 34568999999999999885 4
Q ss_pred HHHHHHHHHHHHHHhcC-ccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcce
Q psy2890 551 HLLYARFWTKLMYNLGL-IKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVI 629 (893)
Q Consensus 551 Hl~y~rf~~~~l~~~g~-~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~ 629 (893)
|+||+|++ .+|+ +.+++||++|++||||+ | .+|
T Consensus 620 ~~W~~rmi-----~~~~~~~~~~PFk~v~~hG~V~-------D-~~G--------------------------------- 653 (1066)
T PLN02381 620 FFWVARMV-----MMGMQLGGDVPFRKVYLHPMIR-------D-AHG--------------------------------- 653 (1066)
T ss_pred hhHHHHHH-----HHHHHhCCCCchHHheecceEE-------C-CCC---------------------------------
Confidence 66655543 3444 67889999999999999 5 666
Q ss_pred eccccccccCCCCccCccchhh-------------------------------------hhCchhHHHHHHhcCCCCCCc
Q psy2890 630 IGGIEKMSKSKNNGIDPQTQIN-------------------------------------TYGADSTRLFIIFSAPPEKNL 672 (893)
Q Consensus 630 ~~~~~KMSKSkgN~i~p~~ii~-------------------------------------~yGaD~lRl~ll~~~~~~~d~ 672 (893)
+|||||+||||||.++|+ +||||+||||+++.+++++|+
T Consensus 654 ----~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~~~~~di 729 (1066)
T PLN02381 654 ----RKMSKSLGNVIDPLEVINGISLEGLHKRLEEGNLDPKELVVAKEGQKKDFPNGIAECGTDALRFALVSYTAQSDKI 729 (1066)
T ss_pred ----CCCCCCCCCCCCHHHHHhhcchhhHHHhhhccccchhhhhhHhhhccccCCCCccccChHHHHHHHHcCCcccccc
Confidence 899999999999999999 799999999999999999999
Q ss_pred ccChhhhhHHHHHHHHHHHHHHhhhhccccccccccccCCccccCCChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy2890 673 EWSDIGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGC 752 (893)
Q Consensus 673 ~~~~~~i~~~~~~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l 752 (893)
+|+.+.+.++++|++||||+++++..++.. .+.+.. ......++..|+||+++|+.++++++++|++|+|+.|++.+
T Consensus 730 ~~~~~~v~~~r~f~nKlwNa~rf~~~~~~~--~~~~~~-~~~~~~~~~~DrWILskL~~~i~~v~~~~e~y~F~~A~~~l 806 (1066)
T PLN02381 730 NLDILRVVGYRQWCNKLWNAVRFAMSKLGD--DYTPPA-TLSVETMPFSCKWILSVLNKAISKTVSSLDAYEFSDAASTV 806 (1066)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHhhccc--ccCccc-ccCccccCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999998753321 111000 00123356789999999999999999999999999999999
Q ss_pred HHHH-HHHHHhh----cccccCCC-----CCcccHHHHHHHHHHHHHHhcccccchHHHHHHHhhcc---CCCCCeeecc
Q psy2890 753 MKIF-NILERIN----SETKFDNN-----KNTNNDILLYEGMSIFLRVLNPIAPHITHILWKELKYS---IQQGDILNAC 819 (893)
Q Consensus 753 ~~fv-n~l~~~~----k~~~~~~~-----~~~~~~~~l~~~l~~ll~LL~P~~P~isEEIwq~L~~~---~~~~sI~~~~ 819 (893)
|+|+ +++++.+ +.+.+.+. +..+++.+|+.+++.+++||||||||+|||||+.|+.. ...+||+.++
T Consensus 807 ~~F~~~dl~d~Yie~~K~~l~~~~~~~~~~r~~a~~~L~~vL~~llrLL~PfmPfitEELw~~L~~~~~~~~~~SI~~~~ 886 (1066)
T PLN02381 807 YSWWQYQFCDVFIEAIKPYFAGDNPEFASERAAAQDTLWICLDTGLRLLHPFMPFVTEELWQRLPQPKDHTRKDSIMISE 886 (1066)
T ss_pred HHHHHHHhHHHHHHHhHHHHccCCccccHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhhccCCCCCeeEeCC
Confidence 9998 4676643 33333322 12356789999999999999999999999999999742 1246999999
Q ss_pred CCCCChhhhh-hHHHHHHHHHHh---hhhcceEE-EecCC
Q psy2890 820 WPKIDSLALE-EEKEEVKLIIQI---NGKFRGHI-FVKKK 854 (893)
Q Consensus 820 wP~~d~~~~~-~~~~~~~~vv~i---~gk~R~~~-~v~~~ 854 (893)
||++++...+ ..+..++.+.++ .+++|++. +++++
T Consensus 887 ~P~~~~~~~d~~le~~~~~l~~ii~~iR~lR~~~~~i~~k 926 (1066)
T PLN02381 887 YPSAVEAWTNEKVEYEMDLVLSTVKCLRSLRAEVLEKQKN 926 (1066)
T ss_pred CCCCCchhCCHHHHHHHHHHHHHHHHHHHHHHHccccccC
Confidence 9998876554 234455555444 44677777 45443
No 11
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.2e-131 Score=1164.49 Aligned_cols=684 Identities=23% Similarity=0.395 Sum_probs=559.5
Q ss_pred CCCchHHHHHHHHHHHhCCCcccCCC-CCCCCCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCcccccccc
Q psy2890 4 KYNFVEIEKITQCYWNKINAYQTTEN-DTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGW 82 (893)
Q Consensus 4 ~y~~~~iE~~~~~~W~~~~~f~~~~~-~~~~~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~ 82 (893)
++|+.++|++++++|+++++|++..+ .+ +|+++|++++||||+||.+|||||+|.+++|++.||+.|+||+|.+++||
T Consensus 17 r~~l~~~E~~i~~~W~e~~iy~k~~~~~~-~g~~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGW 95 (933)
T COG0060 17 RANLPKKEPKILKFWEENDIYEKIREERN-KGKPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGW 95 (933)
T ss_pred cCChhhcCHHHHHHHHHhhHHHHHHHHHh-CCCCcEEEeCCCCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCCCC
Confidence 68999999999999999999998763 32 45899999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHc-CC---------------CHHHHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHHHHH
Q psy2890 83 DAFGMPAENAAILN-NT---------------SPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKM 146 (893)
Q Consensus 83 D~~G~pie~~a~~~-g~---------------~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L 146 (893)
||||||||.+++++ |. .|++++.++++.|+++++|||++.||++.|.||++.|++.++++|.+|
T Consensus 96 DcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~ 175 (933)
T COG0060 96 DCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKEL 175 (933)
T ss_pred cCCCchHHHHHHHHhCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHHHHHH
Confidence 99999999998764 42 167889999999999999999999999999999999999999999999
Q ss_pred HhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHHHHh
Q psy2890 147 FKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVN 226 (893)
Q Consensus 147 ~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~ 226 (893)
++|||||++.++|+|||+|+|+||+.|+. +.+
T Consensus 176 ~~kGllyrg~Kpv~wsp~c~TaLAeaEve------------y~d------------------------------------ 207 (933)
T COG0060 176 YEKGLLYRGYKPVPWSPRCETALAEAEVE------------YGD------------------------------------ 207 (933)
T ss_pred HHCCCeecCCeeeeecCCCCcchhhhhhc------------ccc------------------------------------
Confidence 99999999999999999999999997764 321
Q ss_pred hcccccceeeeeccccCCCCCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhc------hHHHHHHHHHHh
Q psy2890 227 WIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARN------NLLLQKFILEYK 300 (893)
Q Consensus 227 wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~------~~~~~~~~~~~~ 300 (893)
.+|+|+||+|++.+.+ ...+.+++||||||||||+|.||||||+..|+...... ...+..+.++..
T Consensus 208 --~~dpSIyV~F~v~~~~------~~~~~~lviWTTTPWTLPaN~aiav~pd~~Y~lv~~~~~~~IlA~~lve~~~~~~~ 279 (933)
T COG0060 208 --VKDPSIYVKFPVKDEG------LDENAYLVIWTTTPWTLPANLAIAVHPDLDYVLVEVNGEKLILAKALVESVAKKAG 279 (933)
T ss_pred --cCCceEEEEEEeccCC------CCCCcEEEEEeCCCCCchhcceeEeCCCcceEEEEECCEEEEEhHHHHHHHHHHcC
Confidence 1578999999998431 22368999999999999999999999999997655432 223344444433
Q ss_pred hcCcccccccccccc-ccceEEEcCCCC----CeeeEEEecccccCCCCCcc-ccCCCCCHHHHHHHHHcC-Cceeeeec
Q psy2890 301 KNNNIESNNLLKKSI-LTQLKVLHPLTN----QEIKVFVVNYVIEKSYGRAA-IGVPAHNKHDFYFAKKHS-LLIKQVIN 373 (893)
Q Consensus 301 ~~~~~~~~~~~~~g~-~~g~~~~~P~~~----~~ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~~~~~~~-l~~~~vi~ 373 (893)
... . ....+++|. |.|..|.|||.+ +..||+.++||+ .+.|||+ |++||||++||.+|+++| +|+.+.||
T Consensus 280 ~~~-~-~vl~~~kG~~Leg~~y~hPf~~~~~~~~~~v~~gd~VT-~d~GTG~VHtAPghGeeDy~vg~~~g~l~v~~pVD 356 (933)
T COG0060 280 VED-Y-EVLETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVT-LDDGTGLVHTAPGHGEEDYEVGKKYGLLEVLNPVD 356 (933)
T ss_pred Ccc-e-EEeEEeehhhhCCCEeeCCcccccccceeeEEecCeEe-cCCCccceecCCCCCHHHHHHHHHcCCcCCccccC
Confidence 221 1 145678887 899999999995 899999999999 9999999 999999999999999999 79999998
Q ss_pred CCCCCccccccccccccCCccccccCCCCCCCCHHHHHHHHHHHHHHcCCC----------------Ceee---------
Q psy2890 374 VKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGLG----------------NKKN--------- 428 (893)
Q Consensus 374 ~~~g~~~~~~~~~~~~~~g~~~~~~s~~~~gl~~~~a~~~i~~~L~~~~~~----------------~~~~--------- 428 (893)
. +| .|+++ .+.|.|+.+++|++.|++.|++.|.+ ++++
T Consensus 357 ~-~G---------~yt~~-------~~~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWF 419 (933)
T COG0060 357 D-NG---------RYTEE-------APKYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWF 419 (933)
T ss_pred C-Cc---------ccccc-------chhhCCceeccCCHHHHHHHHhCCceeeeeeEEeCCCcccCCCCeeEEeecchhe
Confidence 7 44 44443 35899999999999999999998772 1222
Q ss_pred -----------------Ee--------------eecceeeccccccCCccCeEEcCCCCeeecCCCCCCccCCCccCC-C
Q psy2890 429 -----------------IF--------------RLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVP-N 476 (893)
Q Consensus 429 -----------------~~--------------~l~DW~ISRQr~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~-g 476 (893)
+| +.+||||||||+||+|||+|+|++||.+.+-.++|-....+.+.. |
T Consensus 420 i~v~~~r~~~l~~i~~v~w~P~~~~~R~~~mve~r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~~~El~e~~~~~~~~~g 499 (933)
T COG0060 420 VSVDKLRDKMLKEINKVNWVPDWGKNRFGNMVENRPDWCISRQRYWGVPIPVWYCKETGEILVITEELEELVGQLVEEKG 499 (933)
T ss_pred eEHHHHHHHHHHHHhcceEEChhHHHHHHHHHcCCCcceeeccccCCCceeEEEECCCCCeeccHHHHHHHHHHHhhhcC
Confidence 22 467999999999999999999999987765222221111000000 1
Q ss_pred Cccccccccc---ccccCCCCccceecCCccccccccc-chhhhhcCCCccccCCChhhhhccCCceeeecchhhHHHHH
Q psy2890 477 NLLKENKKFL---HVSCPKCNKLAFRETDTMDTFVDSS-WYYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHL 552 (893)
Q Consensus 477 ~~l~~~~~~~---~~~c~~~g~~~~re~d~~D~WfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl 552 (893)
. -.-+..++ ...|+.||+.++|++|||||||||+ .+++... |.++ ..+..++ +|+|++|.|| |+
T Consensus 500 ~-~~w~~~~idel~~~~~~~g~~~~rv~DvlDVWFDSGs~~~a~~~-~~~~------~~~~~~~-aD~~lEGsDQ---~R 567 (933)
T COG0060 500 I-DDWHRPDIDELLPPCPEDGKEYRRVPDVLDVWFDSGSTPYAVLH-PREN------LKFPALF-ADFYLEGSDQ---TR 567 (933)
T ss_pred c-hhhhccchHhhcCCCCCCcceeEecCcceEEEEcCCCCcccccC-Cccc------ccCcccc-CcEEEEeccc---cc
Confidence 1 11112222 2567688999999999999999995 6666655 5421 1111112 5999999999 77
Q ss_pred HHHHHHHHHHHHhcCccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceecc
Q psy2890 553 LYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGG 632 (893)
Q Consensus 553 ~y~rf~~~~l~~~g~~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~ 632 (893)
+ ||++.++.+. ++.+..||++|++||+|+ | ++|
T Consensus 568 G--WF~Ssl~~s~-a~~~~aPYk~vltHGfvl-------D-e~G------------------------------------ 600 (933)
T COG0060 568 G--WFYSSLLTST-ALFGRAPYKNVLTHGFVL-------D-EKG------------------------------------ 600 (933)
T ss_pred h--hHHHHHHHHH-HHcCCchHHHHhhcccEE-------C-CCC------------------------------------
Confidence 6 5666655544 457799999999999999 6 666
Q ss_pred ccccccCCCCccCccchhhhhCchhHHHHHHhcCCCCCCcccChhhhhHHHHHHHHHHHHHHhhhhccccccccccccCC
Q psy2890 633 IEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHND 712 (893)
Q Consensus 633 ~~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~~~~l~rl~n~~~~~~~~~~~~~~~~~~~~~ 712 (893)
+|||||+||+|+|.+++++||||+||||++++. +..|+.++++.++...+.++++||+++|+..++ ..+++....
T Consensus 601 -rKMSKSlGN~v~P~~V~~~yGADiLRLwv~ssd-~~~dl~~s~~il~~~~~~~r~irNt~rF~l~nl---~~fdp~~~~ 675 (933)
T COG0060 601 -RKMSKSLGNVVDPQDVIDKYGADILRLWVASSD-YWEDLRFSDEILKQVREVYRKIRNTYRFLLGNL---DDFDPKKDA 675 (933)
T ss_pred -CCccccCCCcCCHHHHHHhhCchheeeeeeecC-chhccccCHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCccccc
Confidence 899999999999999999999999999999775 899999999999999999999999999998743 334321111
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHHHHhh----cccccCC-CC---CcccHHHHHHH
Q psy2890 713 FSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIF-NILERIN----SETKFDN-NK---NTNNDILLYEG 783 (893)
Q Consensus 713 ~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fv-n~l~~~~----k~~~~~~-~~---~~~~~~~l~~~ 783 (893)
.....+..+|+||++++++++++++++|++|+|+++++.+++|+ .+|++++ ++++|+. .+ +.+++++|+++
T Consensus 676 ~~~~~~~~~Drwil~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~~Yld~~kdr~y~~~~~s~~rraa~~~Ly~i 755 (933)
T COG0060 676 VLPEELRELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAAQTTLYHI 755 (933)
T ss_pred cchhhcchhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Confidence 12235678899999999999999999999999999999999999 6899864 6677765 32 24789999999
Q ss_pred HHHHHHHhcccccchHHHHHHHhhccCCCCCeeeccCCCCChhhh
Q psy2890 784 MSIFLRVLNPIAPHITHILWKELKYSIQQGDILNACWPKIDSLAL 828 (893)
Q Consensus 784 l~~ll~LL~P~~P~isEEIwq~L~~~~~~~sI~~~~wP~~d~~~~ 828 (893)
|..++++|+||+||+|||||+.|......+|||++.||+++....
T Consensus 756 l~~l~~~lAPilPftaEeiw~~l~~~~~~eSVhl~~~p~~~~~~~ 800 (933)
T COG0060 756 LKALVRLLAPILPFTAEEIWQNLPGERKEESVHLEDWPEVDEELI 800 (933)
T ss_pred HHHHHHHHcccchhhHHHHHHhCccCCCCceeEeccCCccccccc
Confidence 999999999999999999999998743358999999999776654
No 12
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=7.9e-128 Score=1177.94 Aligned_cols=660 Identities=27% Similarity=0.439 Sum_probs=556.4
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCcccCCCCCCCCCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCcccccc
Q psy2890 1 MQKKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPM 80 (893)
Q Consensus 1 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~ 80 (893)
|.++||++++|++||++|+++++|++..+.+ +++|+|++|||||||.|||||+++++++|+++||+||+||+|++++
T Consensus 6 ~~~~~~~~~~E~~~~~~W~~~~~f~~~~~~~---~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~ 82 (800)
T PRK13208 6 LPKKYDPEELEEKWQKIWEEEGTYKFDPDER---KPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQ 82 (800)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcccccccC---CCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCC
Confidence 4568999999999999999999999875543 6889999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHH-cCCCHH------------HHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHHHHHH
Q psy2890 81 GWDAFGMPAENAAIL-NNTSPA------------KWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMF 147 (893)
Q Consensus 81 G~D~~G~pie~~a~~-~g~~~~------------~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~ 147 (893)
||||||+|||.+|++ .|+++. +|++++++.|+++|++||+++||+++++|+||.|.++++++|.+|+
T Consensus 83 G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~ 162 (800)
T PRK13208 83 GWDDNGLPTERKVEKYYGIRKDDISREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLY 162 (800)
T ss_pred CcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHH
Confidence 999999999999988 487765 6999999999999999999999999999999999999999999999
Q ss_pred hcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHHHHhh
Q psy2890 148 KRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNW 227 (893)
Q Consensus 148 ~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~w 227 (893)
++|+||++.++|+|||.|+|+|||.||.. ++.
T Consensus 163 ~~Gliy~~~~~v~wcp~~~t~Lsd~ev~~------------~~~------------------------------------ 194 (800)
T PRK13208 163 KKGLIYRAEAPVLWCPRCETAIAQAEVEY------------RER------------------------------------ 194 (800)
T ss_pred HCCCeeecCcccccCCCCCCccchhhhcc------------ccc------------------------------------
Confidence 99999999999999999999999988752 111
Q ss_pred cccccceeeeeccccCCCCCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhchHHHHHHHHHHhhcCcccc
Q psy2890 228 IGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYKKNNNIES 307 (893)
Q Consensus 228 i~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (893)
.+..++|+|++.+ +.+++|||||||||+|++||||||+++++..
T Consensus 195 --~~~~~~ikf~~~~-----------~~~l~v~TtrPeTl~g~~ai~v~p~~~~~~~----------------------- 238 (800)
T PRK13208 195 --EGKLNYIKFPVED-----------GEEIEIATTRPELLPACVAVVVHPDDERYKH----------------------- 238 (800)
T ss_pred --cceEEEEEEEecC-----------CCEEEEEeCCcchhhhCeEEEECCCchHHHH-----------------------
Confidence 1234789999872 4689999999999999999999999987642
Q ss_pred ccccccccccceEEEcCCCCCeeeEEEecccccCCCCCcc-ccCCCCCHHHHHHHHHcCCceeeeecCCCCCcccccccc
Q psy2890 308 NNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAA-IGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKD 386 (893)
Q Consensus 308 ~~~~~~g~~~g~~~~~P~~~~~ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~ 386 (893)
+.|+++.||++|+++||++++||+ +++|||+ |++|+||++||+++++|||+++++|++ +|
T Consensus 239 --------l~g~~~~~P~~~~~ipii~~~~V~-~~~GTG~V~~~p~hd~~D~~~~~~~~l~~~~~i~~-~G--------- 299 (800)
T PRK13208 239 --------LVGKTAIVPLFGVEVPILADPLVD-PDFGTGAVMICTFGDKTDVTWWRELNLPTRIIIDE-DG--------- 299 (800)
T ss_pred --------hcCCEEEcCCCCCcceEECCCccC-CCCCcceEEeCCCCCHHHHHHHHHcCCCcccccCC-Cc---------
Confidence 479999999999999999999999 9999999 999999999999999999999999986 55
Q ss_pred ccccCCccccc-cCCCCCCCCHHHHHHHHHHHHHHcCCCCee----------------------eEe-------------
Q psy2890 387 WYIDKENCYCI-NSCKYNNMSHKEATNAISTDLIKLGLGNKK----------------------NIF------------- 430 (893)
Q Consensus 387 ~~~~~g~~~~~-~s~~~~gl~~~~a~~~i~~~L~~~~~~~~~----------------------~~~------------- 430 (893)
. +. ++|.|+||++.+|+++|++.|++.|.+.+. .+|
T Consensus 300 ------~--~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwfl~~~~~~~~~~~ 371 (800)
T PRK13208 300 ------R--MTEAAGKLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILVTRQWFIKVLDLKEELLE 371 (800)
T ss_pred ------e--EecCCcccCCCCHHHHHHHHHHHHHhCCCeeceeeeeccCCccCCCCCEEEEeccceeeEeCHHHHHHHHH
Confidence 3 44 578999999999999999999999985321 122
Q ss_pred ---------------------eec-ceeeccccccCCccCeEEcCCCCeeecCC-CCCCccCCCccCCCCcccccccccc
Q psy2890 431 ---------------------RLR-DWAISRQRYWGTPIPIIYCDSCGSVPVPE-KDLPVILPETCVPNNLLKENKKFLH 487 (893)
Q Consensus 431 ---------------------~l~-DW~ISRQr~WG~pIPi~~~~~~~~v~v~~-~~lpv~lp~~~~~g~~l~~~~~~~~ 487 (893)
+++ ||||||||+||+|||+|||++||.+.+++ +.||+. |+.+.+.+
T Consensus 372 ~~~~~~~~P~~~~~~~~~~l~~~~~DW~ISRqr~WG~pIP~~~~~~~g~~~~~~~~~l~~~---------~~~d~~~~-- 440 (800)
T PRK13208 372 RGKEINWYPEHMRVRLENWIEGLNWDWCISRQRYFGTPIPVWYCKDCGHPILPDEEDLPVD---------PTKDEPPG-- 440 (800)
T ss_pred hhcCcEEECHHHHHHHHHHHHhcCCCceeeeccccCCcceEEEeCCCCCeecCchhhhccC---------chhhcccc--
Confidence 234 99999999999999999999999887763 344442 22222222
Q ss_pred cccCCCCc-cceecCCccccccccc-chhhhhcCCCccccCCChhhhhccCCceeeecchhhHHHHHHHHHHHHHHHHHh
Q psy2890 488 VSCPKCNK-LAFRETDTMDTFVDSS-WYYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTKLMYNL 565 (893)
Q Consensus 488 ~~c~~~g~-~~~re~d~~D~WfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~~~~l~~~ 565 (893)
..|+.||. .++|++|||||||||+ |++...++|. +++.+++|+|+|++++|+|+...| |++.++...
T Consensus 441 ~~~~~~g~~~~~~~~dvlD~WfdS~~~~~~~~~~~~------~~~~~~~~~P~d~~~~G~Di~~~w-----~~~~l~~~~ 509 (800)
T PRK13208 441 YKCPQCGSPGFEGETDVMDTWATSSITPLIVTGWER------DEDLFEKVFPMDLRPQGHDIIRTW-----LFYTILRAY 509 (800)
T ss_pred ccccccCCcCEEecCCEEEEEEeCCchHHHHhCCCC------ChhhhhhcCCceEEEeecchhhhH-----HHHHHHHHH
Confidence 57888884 6999999999999998 5666566775 345689999999999999986554 555555544
Q ss_pred cCccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceeccccccccCCCCccC
Q psy2890 566 GLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGID 645 (893)
Q Consensus 566 g~~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSKSkgN~i~ 645 (893)
. +.+.+||+++++||||+ | .+| +|||||+||+|+
T Consensus 510 ~-~~~~~Pf~~v~~hg~v~-------~-~~G-------------------------------------~KMSKS~GN~i~ 543 (800)
T PRK13208 510 L-LTGKLPWKNIMISGMVL-------D-PDG-------------------------------------KKMSKSKGNVVT 543 (800)
T ss_pred H-hcCCCCcceEEEeeEEE-------C-CCC-------------------------------------CCCCCCCCCCCC
Confidence 3 35678999999999998 3 566 899999999999
Q ss_pred ccchhhhhCchhHHHHHHhcCCCCCCcccChhhhhHHHHHHHHHHHHHHhhhhccccccccccccCCccccCCChhHHHH
Q psy2890 646 PQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVF 725 (893)
Q Consensus 646 p~~ii~~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~~~~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~i 725 (893)
|.+++++||+|++|||++ .+++++|++|+++.+.++.++++|+||+++++.. +...... .........|+|+
T Consensus 544 p~~~i~~yg~D~lR~~l~-~~~~~~d~~fs~~~~~~~~~~l~kl~N~~r~~~~-~~~~~~~------~~~~~~~~~D~~i 615 (800)
T PRK13208 544 PEELLEKYGADAVRYWAA-SARLGSDTPFDEKQVKIGRRLLTKLWNASRFVLH-FSADPEP------DKAEVLEPLDRWI 615 (800)
T ss_pred HHHHHHHcCccHHHHHHh-cCCCCCCceecHHHHHHHHHHHHHHHHHHHHHHh-ccccccc------CccccCCHHHHHH
Confidence 999999999999999999 8899999999999999999999999999988764 2211111 0123456789999
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHH-hh---cccccCCCC---CcccHHHHHHHHHHHHHHhcccccc
Q psy2890 726 RRKIHKILQQINRDIKRIQYNTVVSGCMKIFNI-LER-IN---SETKFDNNK---NTNNDILLYEGMSIFLRVLNPIAPH 797 (893)
Q Consensus 726 l~~l~~~i~~v~~~~e~~~f~~ai~~l~~fvn~-l~~-~~---k~~~~~~~~---~~~~~~~l~~~l~~ll~LL~P~~P~ 797 (893)
+++++.+++++.++|++|+|++|++.+++|++. +++ |+ +.+.+.+.. ..+++.+++++++.+++||+|||||
T Consensus 616 l~~l~~~i~~v~~~~e~~~f~~A~~~i~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~~~~~l~~~l~~l~~LLaPf~P~ 695 (800)
T PRK13208 616 LAKLAKVVEKATEALENYDFAKALEEIESFFWHVFCDDYLELVKSRAYGEDEEEEQKSARYTLYTVLDTLLRLLAPFLPF 695 (800)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHhhHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 999999999999999999999999999999974 655 43 223333221 1246779999999999999999999
Q ss_pred hHHHHHHHhhccCCCCCeeeccCCCCChhhhh-hHHHHHHHHHHhhhhcc---eEEEecCC
Q psy2890 798 ITHILWKELKYSIQQGDILNACWPKIDSLALE-EEKEEVKLIIQINGKFR---GHIFVKKK 854 (893)
Q Consensus 798 isEEIwq~L~~~~~~~sI~~~~wP~~d~~~~~-~~~~~~~~vv~i~gk~R---~~~~v~~~ 854 (893)
+|||||+.|+ ++||+.++||++++..++ ..++.++.++++++++| .+++++.+
T Consensus 696 iaEelw~~L~----~~si~~~~wP~~~~~~~~~~~~~~~~~v~~ii~~iR~~r~~~~i~~~ 752 (800)
T PRK13208 696 ITEEVWSWLY----GGSVHRASWPEPDEELIDEEDEELGELAKEILSAVRKYKSEAGLSLN 752 (800)
T ss_pred hHHHHHHhCC----CCceEeccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHcCCCcC
Confidence 9999999998 259999999999876554 23577888888887766 44555543
No 13
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=8.1e-128 Score=1191.20 Aligned_cols=657 Identities=24% Similarity=0.401 Sum_probs=541.5
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCcccCCCCCCCCCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCcccccc
Q psy2890 1 MQKKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPM 80 (893)
Q Consensus 1 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~ 80 (893)
|.+.|||.++|++||++|+++++|+..... .++++|+|++||||+||.|||||+++++++|+++||+||+||+|+|++
T Consensus 15 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~--~~~~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~ 92 (1052)
T PRK14900 15 LAKGYEHREVEARWYPFWQERGYFHGDEHD--RTRPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLP 92 (1052)
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCccCCccc--CCCCCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCC
Confidence 356899999999999999999999985321 127889999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHc-----CCC------------HHHHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHH
Q psy2890 81 GWDAFGMPAENAAILN-----NTS------------PAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIF 143 (893)
Q Consensus 81 G~D~~G~pie~~a~~~-----g~~------------~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f 143 (893)
||||||+|+|.++++. |.+ |++|++++++.|+++|++||+++||+++++|+||.|.++++++|
T Consensus 93 G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F 172 (1052)
T PRK14900 93 GTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVF 172 (1052)
T ss_pred CCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHH
Confidence 9999999999877542 332 56799999999999999999999999999999999999999999
Q ss_pred HHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHH
Q psy2890 144 LKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLM 223 (893)
Q Consensus 144 ~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~ 223 (893)
.+|+++||||++.++|+|||.|+|+||+.||.+. +..
T Consensus 173 ~~L~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev~~~------------e~~------------------------------- 209 (1052)
T PRK14900 173 VRLHEEGLIYREKKLINWCPDCRTALSDLEVEHE------------EAH------------------------------- 209 (1052)
T ss_pred HHHHHCCCEEeccceeccCCCCCCCccHHHhccc------------CCC-------------------------------
Confidence 9999999999999999999999999999887532 100
Q ss_pred HHhhcccccceeeeeccccCCCCCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhchHHHHHHHHHHhhcC
Q psy2890 224 QVNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYKKNN 303 (893)
Q Consensus 224 ~~~wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (893)
.+..++|+|++.++ +.+|+|||||||||+|++||||||+++++..
T Consensus 210 ------~~~~~~i~f~l~~~----------~~~l~vaTTrPeTl~~~~avaV~P~~~~y~~------------------- 254 (1052)
T PRK14900 210 ------QGELWSFAYPLADG----------SGEIVVATTRPETMLGDTAVAVHPLDPRYMA------------------- 254 (1052)
T ss_pred ------CCeEEEEEEEecCC----------CcEEEEEECchhhhhcceeEEECCCcHHHHH-------------------
Confidence 12235799998732 4689999999999999999999999987643
Q ss_pred ccccccccccccccceEEEcCCCCCeeeEEEe-cccccCCCCCcc-ccCCCCCHHHHHHHHHcCCceeeeecCCCCCccc
Q psy2890 304 NIESNNLLKKSILTQLKVLHPLTNQEIKVFVV-NYVIEKSYGRAA-IGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSD 381 (893)
Q Consensus 304 ~~~~~~~~~~g~~~g~~~~~P~~~~~ipv~~~-~~V~~~~~GTG~-~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~ 381 (893)
|.|++|.||++|+.+||+.+ .||+ +++|||+ |++||||++||+++++|||+++++|++ +|+
T Consensus 255 ------------L~G~~~~~Pl~~~~ipIi~d~~~vd-~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~-~G~--- 317 (1052)
T PRK14900 255 ------------LHGKKVRHPITGRTFPIVADAILVD-PKFGTGAVKVTPAHDFNDFEVGKRHGLEMITVIGP-DGR--- 317 (1052)
T ss_pred ------------hcCCEEECCCCCCeeEEEecccccC-cCCCCCeEEecCCCChhHHHHHHHcCCCccceECC-CcE---
Confidence 47999999999999999865 3899 9999999 999999999999999999999999987 553
Q ss_pred cccccccccCCcccccc-CCCCCCCCHHHHHHHHHHHHHHcCCCCee---------------------------------
Q psy2890 382 KIWKDWYIDKENCYCIN-SCKYNNMSHKEATNAISTDLIKLGLGNKK--------------------------------- 427 (893)
Q Consensus 382 ~~~~~~~~~~g~~~~~~-s~~~~gl~~~~a~~~i~~~L~~~~~~~~~--------------------------------- 427 (893)
+.+ .|+|.||++.+||++|++.|++.|++.+.
T Consensus 318 --------------~~~~~~~~~Gl~~~ear~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~~~ie~~~s~qWFi~l~~~k 383 (1052)
T PRK14900 318 --------------MTAEAGPLAGLDRFEARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSATILEPLLSDQWYVRIEPLA 383 (1052)
T ss_pred --------------EecCCcccCCcCHHHHHHHHHHHHHhCCCeecceeeeccCceeCCCCceEEEEeccceeeehHHHH
Confidence 443 57899999999999999999999995431
Q ss_pred -----------eE---------e-----eecceeeccccccCCccCeEEcCCCCeeecCCCCCCccCCCccCCCCccccc
Q psy2890 428 -----------NI---------F-----RLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKEN 482 (893)
Q Consensus 428 -----------~~---------~-----~l~DW~ISRQr~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~g~~l~~~ 482 (893)
+. | +++|||||||||||+|||+|||+++. +.|+.+.
T Consensus 384 ~~~~~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~PIP~w~~~~~~-~~v~~~~------------------ 444 (1052)
T PRK14900 384 RPAIEAVEQGRTRFIPEQWTNTYMAWMRNIHDWCISRQLWWGHQIPAWYCPDGH-VTVARET------------------ 444 (1052)
T ss_pred HHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEeecCCCceeCeEEcCCCc-EEecccc------------------
Confidence 11 1 68999999999999999999998754 4343211
Q ss_pred ccccccccCCCCcc-ceecCCccccccccc-chhhhhcCCCccccCCChhhhhccCCceeeecchhhHHHHHHHHHHHHH
Q psy2890 483 KKFLHVSCPKCNKL-AFRETDTMDTFVDSS-WYYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTK 560 (893)
Q Consensus 483 ~~~~~~~c~~~g~~-~~re~d~~D~WfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~~~ 560 (893)
...||+||+. ++|++|||||||||+ |||+.+++|.+ .+++++|||+|+|++|+|+. |+|+++
T Consensus 445 ----~~~~~~~~~~~~~~~~dVlDvWFdS~l~y~s~~g~p~~------~~~~~~~~P~d~~~~G~Dii--~~W~a~---- 508 (1052)
T PRK14900 445 ----PEACSTCGKAELRQDEDVLDTWFSSGLWPFSTMGWPEQ------TDTLRTFYPTSVMETGHDII--FFWVAR---- 508 (1052)
T ss_pred ----cccccccCccceecCCceEEEEEcCChHHHHHHcCCCc------hHHHHhhCCchhhcccccHH--hHHHHH----
Confidence 1468888764 899999999999998 99999999974 34588999999999998863 544443
Q ss_pred HHHHhcC-ccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceeccccccccC
Q psy2890 561 LMYNLGL-IKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKS 639 (893)
Q Consensus 561 ~l~~~g~-~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSKS 639 (893)
|...|+ +.+..||++|++||||+ | .+| +|||||
T Consensus 509 -~l~~~~~~~~~~Pfk~V~~hG~v~-------d-~~G-------------------------------------~KMSKS 542 (1052)
T PRK14900 509 -MMMMGLHFMGEVPFRTVYLHPMVR-------D-EKG-------------------------------------QKMSKT 542 (1052)
T ss_pred -HHHHHHHhcCCCccceeEecccEE-------C-CCC-------------------------------------CCccCC
Confidence 444443 45679999999999998 4 566 899999
Q ss_pred CCCccCccchhhhhCchhHHHHHHhcCCCCCCcccChhhhhHHHHHHHHHHHHHHhhhhccccccccccccCCccccCCC
Q psy2890 640 KNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFN 719 (893)
Q Consensus 640 kgN~i~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~~~~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (893)
+||+|+|.++|++||+|++||||++.+++++|++|+++.+++.++|++++||+.+++..+... +.+....+....++
T Consensus 543 kGNvIdP~dvIe~yGaDalR~~L~~~~~~g~D~~fs~~~l~~~~~f~nkl~N~~R~~~~~~~~---~~~~~~~~~~~~~~ 619 (1052)
T PRK14900 543 KGNVIDPLVITEQYGADALRFTLAALTAQGRDIKLAKERIEGYRAFANKLWNASRFALMNLSG---YQERGEDPARLART 619 (1052)
T ss_pred CCCCCCHHHHHHHhCcHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhc---cCcccccccccccC
Confidence 999999999999999999999999999999999999999999999999999988877542221 10000000112346
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HHHH-hhcc---cccCCCCC--cccHHHHHHHHHHHHHHhc
Q psy2890 720 NNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIFN-ILER-INSE---TKFDNNKN--TNNDILLYEGMSIFLRVLN 792 (893)
Q Consensus 720 ~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fvn-~l~~-~~k~---~~~~~~~~--~~~~~~l~~~l~~ll~LL~ 792 (893)
..|+||+++++.++++++++|++|+|+.|++.+|+|++ ++++ |+.. +++..... ..++.+++.+|+.+++||+
T Consensus 620 ~~D~wils~l~~~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~n~Yie~~k~~l~~~~~~~~~~~~~~L~~~L~~l~~LLa 699 (1052)
T PRK14900 620 PADRWILARLQRAVNETVEALEAFRFNDAANAVYAFVWHELCDWYIELAKEALASEDPEARRSVQAVLVHCLQTSYRLLH 699 (1052)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhHHHHHhccHhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999985 5655 4422 22222111 2467789999999999999
Q ss_pred ccccchHHHHHHHhhccCC----CCCeeeccCCCCChhhhh-hHHHHHHHHHHh---hhhcceEEEecCC
Q psy2890 793 PIAPHITHILWKELKYSIQ----QGDILNACWPKIDSLALE-EEKEEVKLIIQI---NGKFRGHIFVKKK 854 (893)
Q Consensus 793 P~~P~isEEIwq~L~~~~~----~~sI~~~~wP~~d~~~~~-~~~~~~~~vv~i---~gk~R~~~~v~~~ 854 (893)
|||||+|||||+.|+...+ .+||+.++||++++ ++ +.+..++.+.++ .+++|+..+++.+
T Consensus 700 PfmP~~aEeiw~~L~~~~~~~~~~~SV~~~~wP~~~~--~d~~~e~~~~~v~~ii~~iR~~R~~~~i~~~ 767 (1052)
T PRK14900 700 PFMPFITEELWHVLRAQVGASAWADSVLAAEYPRKGE--ADEAAEAAFRPVLGIIDAVRNIRGEMGIPWK 767 (1052)
T ss_pred hHhHHHHHHHHHHhccccccCCCCCceeecCCCCCCc--ccHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999975211 26999999999875 22 223445544444 4466777777653
No 14
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=5.7e-128 Score=1189.25 Aligned_cols=725 Identities=21% Similarity=0.299 Sum_probs=559.9
Q ss_pred CCCCCchHHHHHHHHHHHhCCCcccCCCCCCCCCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccc
Q psy2890 2 QKKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMG 81 (893)
Q Consensus 2 ~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G 81 (893)
.++||+.++|++|+++|+++++|++..+.+ .++++|++++|||||||.|||||+++++++|+++||+||+||+|++++|
T Consensus 69 ~~~~~~~~~E~~~~~~W~e~~~f~~~~~~~-~~~~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~G 147 (1205)
T PTZ00427 69 SENPNIVEEEEKVLKYWKSIDAFNTSNKLA-KNKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFG 147 (1205)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccCcccc-CCCCcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCc
Confidence 457999999999999999999999876432 2367899999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHc-CC----------------CHHHHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHHH
Q psy2890 82 WDAFGMPAENAAILN-NT----------------SPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFL 144 (893)
Q Consensus 82 ~D~~G~pie~~a~~~-g~----------------~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~ 144 (893)
|||||+|||.++++. |+ .|++|+.++.+.|++++++||+++||+++|.|+++.|.+.++|+|.
T Consensus 148 wD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~~f~ 227 (1205)
T PTZ00427 148 WDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWVFS 227 (1205)
T ss_pred cCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHHHHH
Confidence 999999999998753 32 2688999999999999999999999999999999999999999999
Q ss_pred HHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHHH
Q psy2890 145 KMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQ 224 (893)
Q Consensus 145 ~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~ 224 (893)
+|+++||||++.++|+|||.|+|+||+.||.. ++++.
T Consensus 228 ~L~ekGlIYr~~k~V~wcp~c~TaLS~~EV~~----------~ykd~--------------------------------- 264 (1205)
T PTZ00427 228 ELYKNNYVYKSFKVMPYSCKCNTPISNFELNL----------NYKDT--------------------------------- 264 (1205)
T ss_pred HHHHCCCEEecceeeccCCCCCCchhHHHhhc----------ccccc---------------------------------
Confidence 99999999999999999999999999988732 23322
Q ss_pred HhhcccccceeeeeccccCCC---------------CCC---------------------c-cccCCcEEEEEecccccc
Q psy2890 225 VNWIGKSKGIFLAFPHNIKDP---------------NKN---------------------N-KLIQNGKLWIFTTRIDII 267 (893)
Q Consensus 225 ~~wi~~s~~~~i~f~~~~~~~---------------~~~---------------------~-~~~~~~~l~v~Tt~p~tl 267 (893)
++++++|+|++.+... +.. . ....+.+++|||||||||
T Consensus 265 -----~dpsi~v~F~l~~~~~~~~~~~~~~~~~~~~~~~~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~lliwTTtPwTL 339 (1205)
T PTZ00427 265 -----PDPSIIISFVLCSDFPKVEEECNIEEDKQLLGEKYSVLYNNKRENSNNGNNNSTNNVCYAQHSEILAWTTTPWTL 339 (1205)
T ss_pred -----cCceEEEEeecccccccccccccccccccccccceeeccccccccccccccccccccccCCCCEEEEEECCchhh
Confidence 2455677776653100 000 0 001246899999999999
Q ss_pred ccccEEEECCCChHHHHHh--h------chHHHHHHHHHHhhcCcccccccccccc-ccceEEEcCC---------CCCe
Q psy2890 268 YGITFCVISPEHPLAIFAA--R------NNLLLQKFILEYKKNNNIESNNLLKKSI-LTQLKVLHPL---------TNQE 329 (893)
Q Consensus 268 ~g~~~v~v~p~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~~~~P~---------~~~~ 329 (893)
|||+||||||+..|+.... . ....+..+.++++.+........++.|. +.|.+|.+|+ .++.
T Consensus 340 pan~AlaVnPd~~Yv~v~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~Y~pl~~~~~~~~~~~~~~ 419 (1205)
T PTZ00427 340 PSNLALCVNEHFTYLRIHHVKSNRVVIVGECRLEWIMKELKWNVEDLKIVNRFKGKELKGLRYKPLFTNFYEKYNFKERA 419 (1205)
T ss_pred hhceEEEECCCCeEEEEEecCCCeEEEEehHHHHHHHHhhcccccccEEEEEeechhhCCCeeeCCccccccccccCCce
Confidence 9999999999999875532 1 1223444444432211111134567787 7999999887 3678
Q ss_pred eeEEEecccccCCCCCcc-ccCCCCCHHHHHHHHHcCC--c----eeeeecCCCCCccccccccccccCCccccc-cCCC
Q psy2890 330 IKVFVVNYVIEKSYGRAA-IGVPAHNKHDFYFAKKHSL--L----IKQVINVKNKSYSDKIWKDWYIDKENCYCI-NSCK 401 (893)
Q Consensus 330 ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~~~~~~~l--~----~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~-~s~~ 401 (893)
+||+.++||+ +++|||+ |++||||++||++|++||| | ++++||+ +|+ +. +.|+
T Consensus 420 ~pVi~~d~V~-~~~GTGiVh~aPahg~~Dy~v~~k~gL~~~~~~~~~~~vd~-~G~-----------------~~~~~~~ 480 (1205)
T PTZ00427 420 YKILADDFVT-DDAGTGIVHCAPTYGEDDFRVCKKNGVIDPEKNIFIDPLDA-NGY-----------------FTNEVEE 480 (1205)
T ss_pred eEEEccCccC-CCCCceeeEecCCCChhHHHHHHHcCCCCccccccccccCC-Cce-----------------ecCCCcc
Confidence 9999999999 9999999 9999999999999999999 2 5666765 442 33 3578
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCCe------------------------------------------eeEe---------
Q psy2890 402 YNNMSHKEATNAISTDLIKLGLGNK------------------------------------------KNIF--------- 430 (893)
Q Consensus 402 ~~gl~~~~a~~~i~~~L~~~~~~~~------------------------------------------~~~~--------- 430 (893)
|.||.+.+|++.|++.|++.|.+.+ +++|
T Consensus 481 ~~G~~v~dA~~~Ii~~Lk~~g~L~~~e~~~H~yP~cwR~~tpli~~a~~QWFI~~~~~k~~~l~~~~~i~w~P~~~~~~r 560 (1205)
T PTZ00427 481 VQNLYIKEADNVIKKKLKNENRLLSNNTIVHSYPFCWRSDTPLIYRAIPAWFIRVSNSTNELVKNNETTYWIPAHIKEKK 560 (1205)
T ss_pred cCCCCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecceeEEeCcHHHHHHHHcCCccEEeCchhhHhH
Confidence 9999999999999999999998421 1122
Q ss_pred ------eecceeeccccccCCccCeEEcCCCCeeecCCC--CCCccCCCccCCCCcccccccccc---cccCCCC--ccc
Q psy2890 431 ------RLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEK--DLPVILPETCVPNNLLKENKKFLH---VSCPKCN--KLA 497 (893)
Q Consensus 431 ------~l~DW~ISRQr~WG~pIPi~~~~~~~~v~v~~~--~lpv~lp~~~~~g~~l~~~~~~~~---~~c~~~g--~~~ 497 (893)
+++|||||||||||||||+|+|++|+.+.+..+ +|.. ++. . .+. -+.+..|++ ..||.++ ..+
T Consensus 561 ~~~wl~n~~DWcISRqR~WGtPIPvW~~~~~~~~~~i~s~~el~~-~~~-~-~~~-~dlh~~~iD~~~~~~~~g~~~~~~ 636 (1205)
T PTZ00427 561 FHNWIKDAKDWCISRNRYWGTPIPIWADEKMETVICVESIKHLEE-LSG-V-KNI-NDLHRHFIDHIEIKNPKGKTYPKL 636 (1205)
T ss_pred HHHHHhcCccceeeeccccCccceeEEcCCCCeEeccCCHHHHHH-Hhc-c-ccc-hhhcccccChhhccCCccccccce
Confidence 478999999999999999999999887654321 1100 000 0 000 011233332 3465322 259
Q ss_pred eecCCccccccccc-chhhhhcCCCccccCCChhhhhccCCceeeecchhhHHHHHHHHHHHHHHHHHhcCccCCCccce
Q psy2890 498 FRETDTMDTFVDSS-WYYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIR 576 (893)
Q Consensus 498 ~re~d~~D~WfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pfk~ 576 (893)
+|++|||||||||+ |+|+..++|.++ +++.|++++|+|++++|.||... ||+..++... ++.++.||++
T Consensus 637 ~r~~DVlD~WFdSg~~p~a~~~~P~~~----~~~~f~~~fPaD~i~eG~Dq~rg-----Wf~s~l~~s~-~l~~~~PfK~ 706 (1205)
T PTZ00427 637 KRIPEVFDCWFESGSMPYAKVHYPFST----EKEDFHKIFPADFIAEGLDQTRG-----WFYTLLVIST-LLFDKAPFKN 706 (1205)
T ss_pred eecCceEEEEEeCCCChHHHhCCCccc----chhhHhccCCceEEEEecchhcc-----HHHHHHHHHH-HhcCCCCcce
Confidence 99999999999996 999999998632 24568899999999999999432 3444444443 4678899999
Q ss_pred eeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceeccccccccCCCCccCccchhhhhCch
Q psy2890 577 LLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGAD 656 (893)
Q Consensus 577 l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yGaD 656 (893)
|++||||+ | ++| +|||||+||+|||.++|++||||
T Consensus 707 VlvHG~Vl-------d-~dG-------------------------------------~KMSKSlGNvIDP~evI~kYGAD 741 (1205)
T PTZ00427 707 LICNGLVL-------A-SDG-------------------------------------KKMSKRLKNYPDPLYILDKYGAD 741 (1205)
T ss_pred eEEccEEE-------c-CCC-------------------------------------CCcccCCCCCCCHHHHHHhcCCc
Confidence 99999999 5 666 89999999999999999999999
Q ss_pred hHHHHHHhcCCC-CCCcccChhhhh-HHHHHHHHHHHHHHhhhhcccccc-----ccccccCCccccCCChhHHHHHHHH
Q psy2890 657 STRLFIIFSAPP-EKNLEWSDIGIE-GAYRFLNRVWNFSYILAPRIINII-----NLNIFHNDFSVIKFNNNQKVFRRKI 729 (893)
Q Consensus 657 ~lRl~ll~~~~~-~~d~~~~~~~i~-~~~~~l~rl~n~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~D~~il~~l 729 (893)
+||||+++.+.+ ++|++|+++.+. ..+++++++||.++++..+..... .+.+. ........+..|+||++++
T Consensus 742 aLR~~Lls~~~~~~~Dl~Fse~~v~e~~r~~l~klwN~~rF~~~~i~~~~~~~~~~f~~~-~~~~~~~~~~~DrWILs~l 820 (1205)
T PTZ00427 742 SLRLYLINSVAVRAENLKFQEKGVNEVVKSFILPFYHSFRFFSQEVTRYECLNKKQFLFN-TDYIYKNDNIMDQWIFSSV 820 (1205)
T ss_pred HHHHHHHhcCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCcC-cccccccCCHHHHHHHHHH
Confidence 999999987665 799999999985 678999999999998875322100 11000 0000123467899999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh----cccccCCCC---CcccHHHHHHHHHHHHHHhcccccchHHHH
Q psy2890 730 HKILQQINRDIKRIQYNTVVSGCMKIFNILERIN----SETKFDNNK---NTNNDILLYEGMSIFLRVLNPIAPHITHIL 802 (893)
Q Consensus 730 ~~~i~~v~~~~e~~~f~~ai~~l~~fvn~l~~~~----k~~~~~~~~---~~~~~~~l~~~l~~ll~LL~P~~P~isEEI 802 (893)
+++++.|+++|++|+|+.|+..+++|++++++++ +.+++++.. ..+++.+|+++|+.+++||||||||+||||
T Consensus 821 ~~li~~v~~~me~Y~f~~A~~~i~~Fi~~lsnwYIe~~K~rl~~~~~~~~~~~a~~tL~~vL~~~~~LLaPf~PfiaEei 900 (1205)
T PTZ00427 821 QSLTKSVHTEMKAYKLYNVLPKLLQFIENLTNWYIRLNRDRMRGSLGEENCLQSLCTTYRTLHLFTVLMAPFTPFITEYI 900 (1205)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHHcchhhccCCCcHHHHHHHHHHHHHHHHHHHHccccchHHHHHH
Confidence 9999999999999999999999999998887743 445565422 235788999999999999999999999999
Q ss_pred HHHhhccC-----------------------CCCCeeeccCCCCChhh-hh-hHHHHHHHHHHh---hhhcceEEEecCC
Q psy2890 803 WKELKYSI-----------------------QQGDILNACWPKIDSLA-LE-EEKEEVKLIIQI---NGKFRGHIFVKKK 854 (893)
Q Consensus 803 wq~L~~~~-----------------------~~~sI~~~~wP~~d~~~-~~-~~~~~~~~vv~i---~gk~R~~~~v~~~ 854 (893)
|+.|+... ..+|||.+.||++++.. ++ +.+..|+.+..| .+++|.+.+++..
T Consensus 901 yq~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Svh~~~~P~~~~~~~~d~~~e~~~~~~~~ii~~~R~~R~~~~i~~r 980 (1205)
T PTZ00427 901 YQQLRRVKSTNEHNENNETGNTKEGDLNRGVIHKSVHFIMLPQVDEKYIIDYEIIELIEKMKDVILLGRVLRERRKVASK 980 (1205)
T ss_pred HHHhhhccccccccccccccccccccccccCCCCeeEeeCCCCCcchhccCHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 99996410 13599999999988765 34 234556555554 3456666666554
No 15
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.8e-127 Score=1180.64 Aligned_cols=656 Identities=22% Similarity=0.397 Sum_probs=541.0
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCcccCCCCCCCCCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCcccccc
Q psy2890 1 MQKKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPM 80 (893)
Q Consensus 1 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~ 80 (893)
|.+.|||.+ |++||++|+++++|++..+.+ +++|+|++|||||||.|||||+++++++|+++||+||+||+|+|++
T Consensus 57 ~~~~y~~~~-E~~~~~~W~~~~~f~~~~~~~---~~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~ 132 (958)
T PLN02943 57 TAKSFDFTS-EERIYNWWESQGYFKPNFDRG---GDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIP 132 (958)
T ss_pred cCCCCChhh-hHHHHHHHHHCCCcccCcccC---CCCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCC
Confidence 567899999 999999999999999876533 6789999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHH----cCCC------------HHHHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHHH
Q psy2890 81 GWDAFGMPAENAAIL----NNTS------------PAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFL 144 (893)
Q Consensus 81 G~D~~G~pie~~a~~----~g~~------------~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~ 144 (893)
||||||+|+|.++++ +|++ |++|++++++.|++||++||+++||++.|+|+||.|.++++++|.
T Consensus 133 G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~ 212 (958)
T PLN02943 133 GTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFV 212 (958)
T ss_pred CCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHH
Confidence 999999999987654 3543 567899999999999999999999999999999999999999999
Q ss_pred HHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHHH
Q psy2890 145 KMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQ 224 (893)
Q Consensus 145 ~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~ 224 (893)
+|+++||||++.++|+|||.|+|+||+.||. +++.
T Consensus 213 ~l~~~Gliyr~~~~V~wcp~~~Tals~~Eve------------y~e~--------------------------------- 247 (958)
T PLN02943 213 RLHEKGLIYQGSYMVNWSPNLQTAVSDLEVE------------YSEE--------------------------------- 247 (958)
T ss_pred HHHHCCCEEecCceeccCCCCCCCcCHHHhh------------cccc---------------------------------
Confidence 9999999999999999999999999998874 3221
Q ss_pred HhhcccccceeeeeccccCCCCCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhchHHHHHHHHHHhhcCc
Q psy2890 225 VNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYKKNNN 304 (893)
Q Consensus 225 ~~wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (893)
.+..+||+|++.++. +.+++|||||||||+|++||||||+++++..
T Consensus 248 -----~~~~~~i~f~l~~~~---------~~~l~vaTTrPeTl~~~~avavnP~d~ry~~-------------------- 293 (958)
T PLN02943 248 -----PGTLYYIKYRVAGGS---------EDFLTIATTRPETLFGDVAIAVNPEDDRYSK-------------------- 293 (958)
T ss_pred -----cccEEEEEEEEcCCC---------CCEEEEEeCChhhhhcceEEEECCCCHHHHH--------------------
Confidence 134579999997432 3689999999999999999999999995533
Q ss_pred cccccccccccccceEEEcCCC-CCeeeEEEecccccCCCCCcc-ccCCCCCHHHHHHHHHcCCceeeeecCCCCCcccc
Q psy2890 305 IESNNLLKKSILTQLKVLHPLT-NQEIKVFVVNYVIEKSYGRAA-IGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDK 382 (893)
Q Consensus 305 ~~~~~~~~~g~~~g~~~~~P~~-~~~ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~ 382 (893)
+.|++++||++ |+++||+.++||+ +++|||+ |++||||++||+++++||||+++++|+ +|+
T Consensus 294 -----------l~g~~~~~Pl~~~~~ipii~~~~V~-~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~-~G~---- 356 (958)
T PLN02943 294 -----------YIGKMAIVPMTYGRHVPIIADRYVD-KDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNK-DGT---- 356 (958)
T ss_pred -----------HcCCEEECCCcCCCeeeEEecCccc-CCCCCceEEeCCCCChHHHHHHHHcCCCceeeeCC-Cce----
Confidence 36999999997 9999999999999 9999999 999999999999999999999999987 553
Q ss_pred ccccccccCCccccccCCCCCCCCHHHHHHHHHHHHHHcCCCCe------------------------------------
Q psy2890 383 IWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNK------------------------------------ 426 (893)
Q Consensus 383 ~~~~~~~~~g~~~~~~s~~~~gl~~~~a~~~i~~~L~~~~~~~~------------------------------------ 426 (893)
+. ++.|+.+.+||++|++.|++.|++.+
T Consensus 357 -------------~~---~~~g~~~~ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~~~Ie~~~~~QWFi~~~~l~~~ 420 (958)
T PLN02943 357 -------------LN---EVAGLYWFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEK 420 (958)
T ss_pred -------------ee---ccCCccHHHHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCCcEeEEEeccceeEEHHHHHHH
Confidence 32 23466699999999999999998321
Q ss_pred --------eeEe--------------eecceeeccccccCCccCeEEc--CCCCe-eecCCCCCCccCCCccCCCCcccc
Q psy2890 427 --------KNIF--------------RLRDWAISRQRYWGTPIPIIYC--DSCGS-VPVPEKDLPVILPETCVPNNLLKE 481 (893)
Q Consensus 427 --------~~~~--------------~l~DW~ISRQr~WG~pIPi~~~--~~~~~-v~v~~~~lpv~lp~~~~~g~~l~~ 481 (893)
++.+ +++|||||||||||||||+||| .+|+. +.|....
T Consensus 421 ~l~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~w~~~~~~~~~~~~v~~~~----------------- 483 (958)
T PLN02943 421 ALKAVENGELTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKDCEEDYIVARSA----------------- 483 (958)
T ss_pred HHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEEecCCCCccCceeccccCCCceEEecCcH-----------------
Confidence 0111 5889999999999999999998 46764 2222111
Q ss_pred cccccccccCCCCcc--ceecCCccccccccc-chhhhhcCCCccccCCChhhhhccCCceeeecchhhHHHHHHHHHHH
Q psy2890 482 NKKFLHVSCPKCNKL--AFRETDTMDTFVDSS-WYYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFW 558 (893)
Q Consensus 482 ~~~~~~~~c~~~g~~--~~re~d~~D~WfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~ 558 (893)
.++....|++||.. ++|++|||||||||+ |||..+++|.. +++++++|||+|++++|+|+. + ||
T Consensus 484 -~~~~~~~~~~~g~~~~~~~~~DVlDtWFdS~l~p~s~lgwp~~-----~~~~~~~~yP~dl~~~G~Dii--~-----fW 550 (958)
T PLN02943 484 -EEALEKAREKYGKDVEIYQDPDVLDTWFSSALWPFSTLGWPDV-----SAEDFKKFYPTTVLETGHDIL--F-----FW 550 (958)
T ss_pred -HHHHHHhhhhcCCchheeecCceEEEEEcCccchHHhcCCCcc-----ChHHHhccCCCeEEEEeehHH--H-----HH
Confidence 12223446677765 889999999999998 99999999873 245689999999999999974 2 44
Q ss_pred HHHHHHhcC-ccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceeccccccc
Q psy2890 559 TKLMYNLGL-IKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMS 637 (893)
Q Consensus 559 ~~~l~~~g~-~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMS 637 (893)
...|..+|+ +.++.||+++++||+|+ | .+| +|||
T Consensus 551 ~a~m~~~~~~~~~~~Pf~~v~~hg~v~-------~-~~G-------------------------------------~KMS 585 (958)
T PLN02943 551 VARMVMMGIEFTGTVPFSYVYLHGLIR-------D-SQG-------------------------------------RKMS 585 (958)
T ss_pred HHHHHHhhhhhcCCCChheEEEeccEE-------C-CCC-------------------------------------Cccc
Confidence 444445565 46778999999999998 4 566 8999
Q ss_pred cCCCCccCccchhhhhCchhHHHHHHhcCCCCCCcccChhhhhHHHHHHHHHHHHHHhhhhcccccc-----------cc
Q psy2890 638 KSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFSYILAPRIINII-----------NL 706 (893)
Q Consensus 638 KSkgN~i~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~~~~l~rl~n~~~~~~~~~~~~~-----------~~ 706 (893)
||+||+|+|.+++++||+|++|||+++. ++++|++|+++.++++.+++++|||+++++..++.... .+
T Consensus 586 KS~GN~i~p~~~i~~ygaDalR~~l~~~-~~~~d~~fs~~~l~~~~~~~~kl~N~~rf~~~~l~~~~~~~~~~~~~~~~~ 664 (958)
T PLN02943 586 KTLGNVIDPLDTIKEFGTDALRFTLALG-TAGQDLNLSTERLTSNKAFTNKLWNAGKFVLQNLPSQSDTSAWEHILACKF 664 (958)
T ss_pred CcCCCCCCHHHHHHhcCChHHHHHHHhC-CCCCCccccHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccC
Confidence 9999999999999999999999999975 56999999999999999999999999998865332110 01
Q ss_pred ccccCCccccCCChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHHHHh-h---cccccCCCCC---cccHH
Q psy2890 707 NIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIF-NILERI-N---SETKFDNNKN---TNNDI 778 (893)
Q Consensus 707 ~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fv-n~l~~~-~---k~~~~~~~~~---~~~~~ 778 (893)
+ .......++..|+||+++++.++++++++|++|+|+.|++.+|+|+ +++++. + +.+++.+++. ..++.
T Consensus 665 ~---~~~~~~~l~~~D~wilskl~~~i~~v~~~~e~y~f~~A~~~i~~f~~~~~~d~YiE~~Kprl~~~~~~~~~~~a~~ 741 (958)
T PLN02943 665 D---KEESLLSLPLPECWVVSKLHELIDSVTTSYDKYFFGDVGREIYDFFWSDFADWYIEASKTRLYHSGDNSALSRAQA 741 (958)
T ss_pred C---ccccccccCHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhccHhhccCCchHHHHHHHH
Confidence 0 0001123567899999999999999999999999999999999997 577663 3 3344433221 25788
Q ss_pred HHHHHHHHHHHHhcccccchHHHHHHHhhccCCCCCeeeccCCCCChhhhh-hHHHHHHHHHHhh---hhcceEEEecCC
Q psy2890 779 LLYEGMSIFLRVLNPIAPHITHILWKELKYSIQQGDILNACWPKIDSLALE-EEKEEVKLIIQIN---GKFRGHIFVKKK 854 (893)
Q Consensus 779 ~l~~~l~~ll~LL~P~~P~isEEIwq~L~~~~~~~sI~~~~wP~~d~~~~~-~~~~~~~~vv~i~---gk~R~~~~v~~~ 854 (893)
+++.+++.+++||+|||||+|||||+.|+.. ++||+.++||++++ ..+ ..+..++.+.++. +++|++.+++++
T Consensus 742 vL~~vl~~ll~LL~PfmPfitEELwq~L~~~--~~si~~~~wP~~~~-~~d~~~~~~~~~v~~ii~~iR~~r~~~~i~~~ 818 (958)
T PLN02943 742 VLLYVFENILKLLHPFMPFVTEELWQALPYR--KEALIVSPWPQTSL-PKDLKSIKRFENLQSLTRAIRNARAEYSVEPA 818 (958)
T ss_pred HHHHHHHHHHHHHhCcchhHHHHHHHHcCCC--CCceeecCCCCCcc-cCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999752 46999999999763 222 1244555555543 356677777665
No 16
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=4.2e-127 Score=1179.85 Aligned_cols=657 Identities=27% Similarity=0.456 Sum_probs=549.6
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCcccCCCCCCCCCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCcccccc
Q psy2890 1 MQKKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPM 80 (893)
Q Consensus 1 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~ 80 (893)
|.+.|||+++|++||++|+++++|++..+.+ +++|+|++||||+||.|||||+++++++|+++||+||+|++|++++
T Consensus 1 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~---~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~ 77 (861)
T TIGR00422 1 MPKDYDPHEVEKKWYKKWEKSGFFKPDGNSN---KPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLP 77 (861)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcccCcccC---CCeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCC
Confidence 6789999999999999999999999876544 7889999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHc----CCCH------------HHHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHHH
Q psy2890 81 GWDAFGMPAENAAILN----NTSP------------AKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFL 144 (893)
Q Consensus 81 G~D~~G~pie~~a~~~----g~~~------------~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~ 144 (893)
||||||+|||..+++. |.++ ++|++++++.|++++++||+++||++.++|+|+.|.++|+++|.
T Consensus 78 G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~ 157 (861)
T TIGR00422 78 GTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFV 157 (861)
T ss_pred CcCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHH
Confidence 9999999999987653 4443 68999999999999999999999999999999999999999999
Q ss_pred HHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHHH
Q psy2890 145 KMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQ 224 (893)
Q Consensus 145 ~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~ 224 (893)
+|+++|+||++.++|+|||.|+|+||+.||. +++.
T Consensus 158 ~L~~~GlIy~~~~~v~wcp~~~t~lsd~Ev~------------~~~~--------------------------------- 192 (861)
T TIGR00422 158 RLYEKGLIYRGEYLVNWDPKLNTAISDIEVE------------YKEV--------------------------------- 192 (861)
T ss_pred HHHHCCCeeecCcccccCCCCCCcchHhHhh------------cccc---------------------------------
Confidence 9999999999999999999999999998874 2221
Q ss_pred HhhcccccceeeeeccccCCCCCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhchHHHHHHHHHHhhcCc
Q psy2890 225 VNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYKKNNN 304 (893)
Q Consensus 225 ~~wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (893)
+...++|+|++.++. +.+|+|||||||||+|++||||||+++++..
T Consensus 193 -----~~~~~~i~f~~~~~~---------~~~l~vaTtrPeTl~~~~av~V~P~~~ry~~-------------------- 238 (861)
T TIGR00422 193 -----KGKLYYIRYPLANGS---------KDYLVVATTRPETMFGDTAVAVHPEDERYKH-------------------- 238 (861)
T ss_pred -----cceEEEEEEEecCCC---------CCEEEEEeCCcchhhhCeEEEECCCchHHHH--------------------
Confidence 124478999987432 4799999999999999999999999987532
Q ss_pred cccccccccccccceEEEcCCCCCeeeEEEecccccCCCCCcc-ccCCCCCHHHHHHHHHcCCceeeeecCCCCCccccc
Q psy2890 305 IESNNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAA-IGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKI 383 (893)
Q Consensus 305 ~~~~~~~~~g~~~g~~~~~P~~~~~ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~ 383 (893)
|.|+++.+|++|+++||++++||+ +++|||+ |+|||||++||+++++|||+++++++. +|.
T Consensus 239 -----------l~g~~~~~P~~~~~ipii~~~~V~-~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~-~G~----- 300 (861)
T TIGR00422 239 -----------LIGKKVILPLTGRKIPIIADEYVD-MEFGTGAVKVTPAHDFNDYEWGKRHNLEFINILDE-DGL----- 300 (861)
T ss_pred -----------hcCCEEEcCCCCCcceeeecCCCC-cccCCCceEecCCCChHHHHHHHHcCCCccceeCC-CCe-----
Confidence 479999999999999999999999 9999999 999999999999999999999999987 553
Q ss_pred cccccccCCccccc-cCCCCCCCCHHHHHHHHHHHHHHcCCCCe------------------------------------
Q psy2890 384 WKDWYIDKENCYCI-NSCKYNNMSHKEATNAISTDLIKLGLGNK------------------------------------ 426 (893)
Q Consensus 384 ~~~~~~~~g~~~~~-~s~~~~gl~~~~a~~~i~~~L~~~~~~~~------------------------------------ 426 (893)
+. ++|.|.||++.+||++|++.|++.|.+.+
T Consensus 301 ------------~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~g~~ve~~~~~qWFi~~~~~~~~ 368 (861)
T TIGR00422 301 ------------LNENAGKYQGLTRFEARKKIVEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSKQWFVKVEKLADK 368 (861)
T ss_pred ------------EcCCCcccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEEEecCcceEecHHHHHH
Confidence 33 57899999999999999999999998321
Q ss_pred --------eeEe--------------eecceeeccccccCCccCeEEcCCCCeeecCCCCCCccCCCccCCCCccccccc
Q psy2890 427 --------KNIF--------------RLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKENKK 484 (893)
Q Consensus 427 --------~~~~--------------~l~DW~ISRQr~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~g~~l~~~~~ 484 (893)
++.+ +++||||||||+||||||+|+|++||.+.|..+...... +
T Consensus 369 ~~~~~~~~~i~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~piP~w~~~~~~~~~v~~~~~~~~~-------------~- 434 (861)
T TIGR00422 369 ALEAAEEGEIKFVPKRMEKRYLNWLRNIKDWCISRQLIWGHRIPVWYCKECGEVYVAKEEPLPDD-------------K- 434 (861)
T ss_pred HHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCCcceEEEECCCCcEEeccchHHhhh-------------h-
Confidence 1222 589999999999999999999999998776532210000 0
Q ss_pred ccccccCCCC--ccceecCCccccccccc-chhhhhcCCCccccCCChhhhhccCCceeeecchhhHHHHHHHHHHHHHH
Q psy2890 485 FLHVSCPKCN--KLAFRETDTMDTFVDSS-WYYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTKL 561 (893)
Q Consensus 485 ~~~~~c~~~g--~~~~re~d~~D~WfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~~~~ 561 (893)
. .|| ..++|++|||||||||+ ||+..+++|.+ .+++++|||+|++++|+|+..+|. +++
T Consensus 435 ---~---~~~~~~~~~~~~dVlDtWFdS~l~~~s~~g~p~~------~~~~~~~~P~d~~~~G~Dii~fw~--~~~---- 496 (861)
T TIGR00422 435 ---T---NTGPSVELEQDTDVLDTWFSSSLWPFSTLGWPDE------TKDLKKFYPTDLLVTGYDIIFFWV--ARM---- 496 (861)
T ss_pred ---h---ccCCcccEEECCCcccceeccchHHHHHhCCCCC------hHHHhhcCCcceeecchhhhhHHH--HHH----
Confidence 1 133 47999999999999998 89999899863 356899999999999999765442 222
Q ss_pred HHHhc-CccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceeccccccccCC
Q psy2890 562 MYNLG-LIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSK 640 (893)
Q Consensus 562 l~~~g-~~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSKSk 640 (893)
..++ .+.+..||+++++||||+ | .+| +|||||+
T Consensus 497 -~~~~~~~~~~~Pfk~v~~hG~v~-------d-~~G-------------------------------------~KMSKS~ 530 (861)
T TIGR00422 497 -IFRSLALTGQVPFKEVYIHGLVR-------D-EQG-------------------------------------RKMSKSL 530 (861)
T ss_pred -HHHHHHhcCCCchheEEEeeEEE-------C-CCC-------------------------------------CCCCcCC
Confidence 2222 245689999999999998 4 566 8999999
Q ss_pred CCccCccchhhhhCchhHHHHHHhcCCCCCCcccChhhhhHHHHHHHHHHHHHHhhhhccccccccccccCCccccCCCh
Q psy2890 641 NNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNN 720 (893)
Q Consensus 641 gN~i~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~~~~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (893)
||+|+|.++|++||||++|||+++.+++++|++|+++.+.++++|+++|||+.+++..+......+. ......+.
T Consensus 531 GN~i~p~~~i~~ygaDalR~~l~~~~~~~~d~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~-----~~~~~~~~ 605 (861)
T TIGR00422 531 GNVIDPLDVIEKYGADALRFTLASLVTPGDDINFDWKRVESARNFLNKLWNASRFVLMNLSDDLELS-----GGEEKLSL 605 (861)
T ss_pred CCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceecHHHHHHHHHHHHHHHHHHHHHHhccccccccc-----cccccCCH
Confidence 9999999999999999999999999988999999999999999999999998888765221111110 01123567
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHHHH-hhc---ccccCCCC--CcccHHHHHHHHHHHHHHhcc
Q psy2890 721 NQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIF-NILER-INS---ETKFDNNK--NTNNDILLYEGMSIFLRVLNP 793 (893)
Q Consensus 721 ~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fv-n~l~~-~~k---~~~~~~~~--~~~~~~~l~~~l~~ll~LL~P 793 (893)
.|+||+++++.++++++++|++|+|+.|++.+++|+ +++++ |+. .+.+.+.. ...++.+++.+++.+++||+|
T Consensus 606 ~D~wil~~l~~~~~~v~~~~e~~~f~~A~~~l~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~~~~l~~~l~~~~~lL~P 685 (861)
T TIGR00422 606 ADRWILSKLNRTIKEVRKALDKYRFAEAAKALYEFIWNDFCDWYIELVKYRLYNGNEAEKKAARDTLYYVLDKALRLLHP 685 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 899999999999999999999999999999999997 56665 432 22222211 135788999999999999999
Q ss_pred cccchHHHHHHHhhccCCCCCeeeccCCCCChhhhh-hHHHHHHHHHHhh---hhcceEEEecCC
Q psy2890 794 IAPHITHILWKELKYSIQQGDILNACWPKIDSLALE-EEKEEVKLIIQIN---GKFRGHIFVKKK 854 (893)
Q Consensus 794 ~~P~isEEIwq~L~~~~~~~sI~~~~wP~~d~~~~~-~~~~~~~~vv~i~---gk~R~~~~v~~~ 854 (893)
||||+|||||+.|+.. .+||+.++||++++...+ ..+..++.+.++. +++|++.+++++
T Consensus 686 f~P~itEelw~~L~~~--~~si~~~~~P~~~~~~~d~~~e~~~~~l~~ii~~iR~~r~~~~i~~~ 748 (861)
T TIGR00422 686 FMPFITEEIWQHFKEG--ADSIMLQSYPVVDAEFVDEEAEKAFELLKEIIVSIRNLKAESNIPPN 748 (861)
T ss_pred hhhHHHHHHHHhCccc--CCceeecCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999852 479999999998876544 2345556555553 466777777654
No 17
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.5e-127 Score=1178.11 Aligned_cols=651 Identities=26% Similarity=0.445 Sum_probs=542.6
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCcccCCCCCCCCCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCcccccc
Q psy2890 1 MQKKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPM 80 (893)
Q Consensus 1 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~ 80 (893)
|.+.|||+++|++||++|+++++|++..+ + +++|+|++||||+||.|||||+++++++|+++||+||+||+|+|++
T Consensus 5 ~~~~y~~~~~E~~~~~~W~~~~~f~~~~~-~---~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~ 80 (874)
T PRK05729 5 LPKTYDPKEVEAKWYQKWEEKGYFKPDDN-S---KKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLP 80 (874)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcccCcC-C---CCCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCC
Confidence 46789999999999999999999998654 2 4569999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHH----cCCC------------HHHHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHHH
Q psy2890 81 GWDAFGMPAENAAIL----NNTS------------PAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFL 144 (893)
Q Consensus 81 G~D~~G~pie~~a~~----~g~~------------~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~ 144 (893)
||||||+|+|.++++ +|++ |++|++++++.|++||++||+++||+++++|+|+.|.++|+++|.
T Consensus 81 G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~ 160 (874)
T PRK05729 81 GTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFV 160 (874)
T ss_pred CCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHH
Confidence 999999998877644 3655 456899999999999999999999999999999999999999999
Q ss_pred HHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHHH
Q psy2890 145 KMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQ 224 (893)
Q Consensus 145 ~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~ 224 (893)
+|+++|+||++.++|+|||.|+|+|||.||. +++..
T Consensus 161 ~L~~~GlIyr~~~~v~wcp~~~talsd~EV~------------~~~~~-------------------------------- 196 (874)
T PRK05729 161 RLYEKGLIYRGKRLVNWDPKLQTALSDLEVE------------YKEVK-------------------------------- 196 (874)
T ss_pred HHHHCCCEeecCcccccCCCCCCcchhhhcc------------ccccc--------------------------------
Confidence 9999999999999999999999999998764 33221
Q ss_pred HhhcccccceeeeeccccCCCCCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhchHHHHHHHHHHhhcCc
Q psy2890 225 VNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYKKNNN 304 (893)
Q Consensus 225 ~~wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (893)
+..++|+|++.++ +.+++|||||||||+|++||||||+++++..
T Consensus 197 ------~~~~~i~f~~~~~----------~~~l~vaTtrPeTl~~~~avaV~P~d~ry~~-------------------- 240 (874)
T PRK05729 197 ------GKLWHIRYPLADG----------SDYLVVATTRPETMLGDTAVAVNPEDERYKH-------------------- 240 (874)
T ss_pred ------ceEEEEEEEecCC----------CcEEEEEeCCcchhhcCeeEeECCCccHHHH--------------------
Confidence 2457999999742 5799999999999999999999999987643
Q ss_pred cccccccccccccceEEEcCCCCCeeeEEEecccccCCCCCcc-ccCCCCCHHHHHHHHHcCCceeeeecCCCCCccccc
Q psy2890 305 IESNNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAA-IGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKI 383 (893)
Q Consensus 305 ~~~~~~~~~g~~~g~~~~~P~~~~~ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~ 383 (893)
+.|+++.||++|+++||+.++||+ +++|||+ |++||||++||+++++|||++++++++ +|.
T Consensus 241 -----------l~g~~~~~P~~~~~ipii~~~~V~-~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~-~G~----- 302 (874)
T PRK05729 241 -----------LIGKTVILPLVGREIPIIADEYVD-PEFGTGAVKITPAHDPNDFEVGKRHNLPMINIMDE-DGT----- 302 (874)
T ss_pred -----------hcCCEEECCCCCCeeeEecCccCC-CCCCCcceEecCCCCHHHHHHHHHcCCCcccccCC-CCe-----
Confidence 479999999999999999999999 9999999 999999999999999999999999987 553
Q ss_pred cccccccCCccccc-cCCCCCCCCHHHHHHHHHHHHHHcCCCCee-----------------------------------
Q psy2890 384 WKDWYIDKENCYCI-NSCKYNNMSHKEATNAISTDLIKLGLGNKK----------------------------------- 427 (893)
Q Consensus 384 ~~~~~~~~g~~~~~-~s~~~~gl~~~~a~~~i~~~L~~~~~~~~~----------------------------------- 427 (893)
+. ++|+|.||++.+||++|++.|++.|++.+.
T Consensus 303 ------------~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~~~~i~~~~~~QWFi~~~~~~~~ 370 (874)
T PRK05729 303 ------------INENPGEYQGLDRFEARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYLSDQWFVKMKPLAKP 370 (874)
T ss_pred ------------EcCCCcccCCCCHHHHHHHHHHHHHhCCCeeeeEEeeccCCeeCCCCceEEEEecCcceEehHHHHHH
Confidence 43 468999999999999999999999985221
Q ss_pred ---------eEe--------------eecceeeccccccCCccCeEEcCCCCeeecCCCCCCccCCCccCCCCccccccc
Q psy2890 428 ---------NIF--------------RLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKENKK 484 (893)
Q Consensus 428 ---------~~~--------------~l~DW~ISRQr~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~g~~l~~~~~ 484 (893)
+.+ +++||||||||+||||||+|+|+++ .+.|..+. |
T Consensus 371 ~~~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~~-~~~v~~~~-----~-------------- 430 (874)
T PRK05729 371 ALEAVENGEIKFVPERWEKTYFHWMENIQDWCISRQLWWGHRIPAWYDEDG-EVYVGREE-----P-------------- 430 (874)
T ss_pred HHHHHhcCCcEEEChHHHHHHHHHHhcCccceeeeecccCCcccEEEeCCC-cEEeCCcc-----c--------------
Confidence 111 5899999999999999999999873 34443221 0
Q ss_pred ccccccCCCCccceecCCccccccccc-chhhhhcCCCccccCCChhhhhccCCceeeecchhhHHHHHHHHHHHHHHHH
Q psy2890 485 FLHVSCPKCNKLAFRETDTMDTFVDSS-WYYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTKLMY 563 (893)
Q Consensus 485 ~~~~~c~~~g~~~~re~d~~D~WfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~~~~l~ 563 (893)
..|+ ...++|++|||||||||+ ||++.+++|.+ ++++++|||+|++++|+|+. + ||...|.
T Consensus 431 ---~~~~--~~~~~~~~DvlDtWfsS~l~~~~~lgwp~~------~~~~~~~~P~d~~~~G~Dii--~-----~W~a~~~ 492 (874)
T PRK05729 431 ---EARE--KALLTQDEDVLDTWFSSALWPFSTLGWPEK------TEDLKRFYPTSVLVTGFDII--F-----FWVARMI 492 (874)
T ss_pred ---cccc--ccCeEeCCceecceecCCccHHHHhCCCCC------cHHHHhcCCccccccccccc--c-----hHHHHHH
Confidence 1121 125899999999999997 99999999963 45689999999999999973 2 4454455
Q ss_pred HhcC-ccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceeccccccccCCCC
Q psy2890 564 NLGL-IKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNN 642 (893)
Q Consensus 564 ~~g~-~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSKSkgN 642 (893)
.+|+ +.++.||+++++||||+ | .+| +|||||+||
T Consensus 493 ~~~~~~~~~~Pfk~v~~hG~v~-------d-~~G-------------------------------------~KMSKSlGN 527 (874)
T PRK05729 493 MMGLHFTGQVPFKDVYIHGLVR-------D-EQG-------------------------------------RKMSKSKGN 527 (874)
T ss_pred HHHHHhcCCCchhheEEeeeEE-------C-CCC-------------------------------------CCcccCCCC
Confidence 5554 56789999999999998 4 566 899999999
Q ss_pred ccCccchhhhhCchhHHHHHHhcCCCCCCcccChhhhhHHHHHHHHHHHHHHhhhhccccccccccccCCccccCCChhH
Q psy2890 643 GIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQ 722 (893)
Q Consensus 643 ~i~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~~~~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 722 (893)
+|+|.++|++||||++|||+++.+++++|++|+++.++++++|++++||+++++..+......- ..+....++..|
T Consensus 528 vIdP~dvi~~yGaDalR~~ll~~~~~~~Di~fs~~~l~~~~~~~nkl~N~~Rf~~~~~~~~~~~----~~~~~~~~~~~D 603 (874)
T PRK05729 528 VIDPLDLIDKYGADALRFTLAALASPGRDIRFDEERVEGYRNFANKLWNASRFVLMNLEGADVG----ELPDPEELSLAD 603 (874)
T ss_pred CCCHHHHHHHhChHHHHHHHHhCCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHHhcccCCcc----cccccccCCHHH
Confidence 9999999999999999999999989999999999999999999999999998876522111000 000122456789
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHHHHhh----cccccCCCCCcccHHHHHHHHHHHHHHhcccccc
Q psy2890 723 KVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIF-NILERIN----SETKFDNNKNTNNDILLYEGMSIFLRVLNPIAPH 797 (893)
Q Consensus 723 ~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fv-n~l~~~~----k~~~~~~~~~~~~~~~l~~~l~~ll~LL~P~~P~ 797 (893)
+||+++++.+++++.++|++|+|+.|++.+++|+ +++++++ +.+++ +.....++.+++.+++.+++||+|||||
T Consensus 604 ~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~~~~~Yle~~k~~l~-~~~~~~~~~~l~~~l~~~~~lL~Pf~Pf 682 (874)
T PRK05729 604 RWILSRLNRTVAEVTEALDKYRFDEAARALYEFIWNEFCDWYLELAKPVLQ-EAAKRATRATLAYVLEQILRLLHPFMPF 682 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHcccchh
Confidence 9999999999999999999999999999999999 4676643 22333 2112357889999999999999999999
Q ss_pred hHHHHHHHhhccCCCCCeeeccCCCCChhhhh-hHHHHHHHHHHhh---hhcceEEEecCC
Q psy2890 798 ITHILWKELKYSIQQGDILNACWPKIDSLALE-EEKEEVKLIIQIN---GKFRGHIFVKKK 854 (893)
Q Consensus 798 isEEIwq~L~~~~~~~sI~~~~wP~~d~~~~~-~~~~~~~~vv~i~---gk~R~~~~v~~~ 854 (893)
+|||||+.|+...+.+||+.++||++++.. + ..+..++.+.++. +++|++.+++++
T Consensus 683 itEelw~~l~~~~~~~si~~~~~P~~~~~~-~~~~~~~~~~~~~ii~~ir~~r~~~~i~~~ 742 (874)
T PRK05729 683 ITEELWQKLAPLGIEESIMLAPWPEADEAI-DEAAEAEFEWLKELITAIRNIRAEMNIPPS 742 (874)
T ss_pred hHHHHHHhcccCCCCCceeecCCCCCCccc-CHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 999999999853112489999999987653 3 1234455555543 456677777654
No 18
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=1.4e-127 Score=1185.43 Aligned_cols=721 Identities=22% Similarity=0.369 Sum_probs=561.9
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCcccCCCCCCCCCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCcccccc
Q psy2890 1 MQKKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPM 80 (893)
Q Consensus 1 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~ 80 (893)
+..+||+.++|++||++|+++++|++..+.+ .++++|+|++|||||||.|||||++|++++|+++||+||+||+|++++
T Consensus 2 f~~~~~~~~~E~~~~~~W~~~~~f~~~~~~~-~~~~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~ 80 (861)
T TIGR00392 2 FPMRGNLSKREEKILAFWQENDIFEKVKKLN-KGKPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKP 80 (861)
T ss_pred CCCCCChhHhhHHHHHHHHHCCchhhhhhcc-CCCCCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCC
Confidence 3467999999999999999999999754321 237889999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHc-CCC----------------HHHHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHH
Q psy2890 81 GWDAFGMPAENAAILN-NTS----------------PAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIF 143 (893)
Q Consensus 81 G~D~~G~pie~~a~~~-g~~----------------~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f 143 (893)
||||||+|||.+|+++ |++ |++|+.++++.|+++|++||+++||+++|.|+||.|+++++|+|
T Consensus 81 G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f 160 (861)
T TIGR00392 81 GWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLF 160 (861)
T ss_pred CcCCCccHHHHHHHHHhCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHH
Confidence 9999999999999876 543 35899999999999999999999999999999999999999999
Q ss_pred HHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHH
Q psy2890 144 LKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLM 223 (893)
Q Consensus 144 ~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~ 223 (893)
.+|+++|+||++.++|+|||.|+|+|||+||.++.|+++
T Consensus 161 ~~l~~~gliyr~~~~v~w~p~~~T~La~~Ev~~~~~~~~----------------------------------------- 199 (861)
T TIGR00392 161 KEAHEKGLLYRGLKPVYWSPRCRTALAEAEVEYKENYKD----------------------------------------- 199 (861)
T ss_pred HHHHHCCCEeecceeeecCCCcCCcccHHHHhccccccc-----------------------------------------
Confidence 999999999999999999999999999999998877663
Q ss_pred HHhhcccccceeeeeccccCCCCCCccccCC-cEEEEEeccccccccccEEEECCCChHHHHHhhchHH----HHHHHHH
Q psy2890 224 QVNWIGKSKGIFLAFPHNIKDPNKNNKLIQN-GKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLL----LQKFILE 298 (893)
Q Consensus 224 ~~~wi~~s~~~~i~f~~~~~~~~~~~~~~~~-~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~~----~~~~~~~ 298 (893)
++|.++||+|++.++... ..... .+++|||||||||+||+||||||+++|+......+.+ ..+++++
T Consensus 200 -----~~~~~~~v~f~~~~~~~~---~~~~~~~~l~i~TTrP~Tl~~~~ai~v~p~~~Y~~~~~~~~~~~~i~~~~~~~~ 271 (861)
T TIGR00392 200 -----VKDPSIYVKFPVKKDKKT---YLKVKLSSLLIWTTTPWTLPSNLAIAVHPDFEYALVQDNTKVEYFILAKKLVEK 271 (861)
T ss_pred -----ccCceEEEEEEecCCccc---ccccccceEEEEECCcccccCCeeeeeCCCCceEEEEcCCCCcEEEEeHHHHHH
Confidence 135678999998632100 00001 2899999999999999999999999987654332111 2233444
Q ss_pred HhhcCcc-cccccccccc-ccceEEEcCCCCCee------eEEEe-cccccCCCCCcc-ccCCCCCHHHHHHHHHcCCce
Q psy2890 299 YKKNNNI-ESNNLLKKSI-LTQLKVLHPLTNQEI------KVFVV-NYVIEKSYGRAA-IGVPAHNKHDFYFAKKHSLLI 368 (893)
Q Consensus 299 ~~~~~~~-~~~~~~~~g~-~~g~~~~~P~~~~~i------pv~~~-~~V~~~~~GTG~-~~~Pah~~~D~~~~~~~~l~~ 368 (893)
+...... .....+++|. |.|++|.||++++++ |++.+ +||+ +++|||+ |+|||||++||+++++|||++
T Consensus 272 ~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~~~~~~~~p~v~~~~~V~-~~~GTG~V~~~Pah~~~D~~~~~~~~l~~ 350 (861)
T TIGR00392 272 LYNKAGSDYEIIKTFKGSDLEGLEYEHPLYDFVSQLKEGAPVVIGGDHVT-TEDGTGIVHTAPGHGEEDYEIGKKYGLEV 350 (861)
T ss_pred HHHhcCCceEEEeeecchhhCCCEEECCCCccccccccCCcEEeCCCCCC-CCCCCceeEcCCCCCHHHHHHHHHcCCCc
Confidence 3322111 1134567887 799999999999998 97555 9999 9999999 999999999999999999998
Q ss_pred eeeecCCCCCccccccccccccCCccccccCC---CCCCCCHHHHHHHHHHHHHHcCCCCe-------------------
Q psy2890 369 KQVINVKNKSYSDKIWKDWYIDKENCYCINSC---KYNNMSHKEATNAISTDLIKLGLGNK------------------- 426 (893)
Q Consensus 369 ~~vi~~~~g~~~~~~~~~~~~~~g~~~~~~s~---~~~gl~~~~a~~~i~~~L~~~~~~~~------------------- 426 (893)
+.+|++ +|+ |+.. . ...+| .|.|+++.+|+++|++.|++.|.+-+
T Consensus 351 ~~~vd~-~g~---------~~~~-~--~~~~g~~~~~~g~~~~~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~R~~~~v~ 417 (861)
T TIGR00392 351 LSPVDE-KGV---------YTEG-V--NDFQGRFVKDADKDIIKANKIIIEQLKDKGLLLKAEKITHSYPHCWRTKTPVI 417 (861)
T ss_pred ccccCC-Cce---------ECCc-C--ccccccccccCCccHHHhHHHHHHHHHhCCCeeeeeeEecCCCccCCCCCEEE
Confidence 888876 553 2221 1 12234 68999999999999999999997321
Q ss_pred -----------------------eeEe--------------eecceeeccccccCCccCeEEcCCCCeeecCCCCCCccC
Q psy2890 427 -----------------------KNIF--------------RLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVIL 469 (893)
Q Consensus 427 -----------------------~~~~--------------~l~DW~ISRQr~WG~pIPi~~~~~~~~v~v~~~~lpv~l 469 (893)
++++ +++|||||||||||+|||+|+|++||.+ +++.+
T Consensus 418 ~~~~~QWFi~~~~~k~~~l~~~~~i~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~~~~~~~------~~~~~ 491 (861)
T TIGR00392 418 YRATEQWFIKTKDIKDQMLEQIKKVNWVPEWGEGRFGNWLENRPDWCISRQRYWGIPIPIWYCEDTGEP------IVVGS 491 (861)
T ss_pred EecCccccEEcHHHHHHHHHHhCCcEEECchHHHHHHHHHhCCCcceeeccccCCCeeeEEEECCCCCC------cCchh
Confidence 0111 4799999999999999999999999865 23333
Q ss_pred CCccC-----CCC---cccccc---cccccccCCCCccceecCCccccccccc-chhhhhcCCCccccCCChhhhhccCC
Q psy2890 470 PETCV-----PNN---LLKENK---KFLHVSCPKCNKLAFRETDTMDTFVDSS-WYYMRYISPKLENFMIDDNKINYWMP 537 (893)
Q Consensus 470 p~~~~-----~g~---~l~~~~---~~~~~~c~~~g~~~~re~d~~D~WfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~P 537 (893)
++.+. .|. +...++ +|....|++| ..++|++|||||||||+ ||+...++|.+ .+++++|+|
T Consensus 492 ~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~-~~~~r~~dvlDvWfdS~~~~~~~~~~~~~------~~~f~~~~P 564 (861)
T TIGR00392 492 IEELIELIELKGIDAWFEDLHRDFLDKITLKSGDG-GEYRRVPDVLDVWFDSGSMPYASIHYPFE------NEKFKEVFP 564 (861)
T ss_pred HHHHHHHHHHhCCccccccchhhhcCchhccCCCC-cceEEccccccchhhcCcchHHhcCCCCC------cchhhccCC
Confidence 32211 122 122223 3445678866 68999999999999996 66665567653 235889999
Q ss_pred ceeeecchhhHHHHHHHHHHHHHHHHHhc-CccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCc
Q psy2890 538 VDQYIGGIEHAILHLLYARFWTKLMYNLG-LIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKP 616 (893)
Q Consensus 538 vD~~igG~D~~i~Hl~y~rf~~~~l~~~g-~~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~ 616 (893)
+|+|++|+||+..|+ ..+...+ ++.+.+||+++++||||+ | .+|
T Consensus 565 ~d~~i~G~Di~r~Wf-------~~~~~~~~~~~~~~P~k~v~~hG~vl-------~-~~G-------------------- 609 (861)
T TIGR00392 565 ADFILEGSDQTRGWF-------YSSLAIGTALFGQAPYKNVITHGFTL-------D-EKG-------------------- 609 (861)
T ss_pred ceEEEEecchhccHH-------HHHHHHHHHHcCCCChHhhEecceEE-------C-CCC--------------------
Confidence 999999999965331 1222222 234679999999999998 3 455
Q ss_pred cceeeecCCCcceeccccccccCCCCccCccchhhhhCchhHHHHHHhcCCCCCCcccChhhhhHHHH-HHHHHHHHHHh
Q psy2890 617 IHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYR-FLNRVWNFSYI 695 (893)
Q Consensus 617 ~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~~~-~l~rl~n~~~~ 695 (893)
+|||||+||+|+|.++|++||||++|||+++. ++++|++|+++.++++.+ +.+++||++++
T Consensus 610 -----------------~KMSKSkGNvI~p~d~i~~yGaDalR~~ll~~-~~~~D~~fs~~~l~~~~~~~~n~l~N~~~~ 671 (861)
T TIGR00392 610 -----------------RKMSKSLGNVVDPLKVINKYGADILRLYVASS-DPWEDLRFSDEILKQVVEKYRKIRWNTYRF 671 (861)
T ss_pred -----------------CCcCCCCCCCCCHHHHHHHcCHHHHHHHHHhC-CCCCCceECHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999988 899999999999998776 89999999988
Q ss_pred hh--hccccccccccccCCccccCCChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHHhh----ccccc
Q psy2890 696 LA--PRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIFNI-LERIN----SETKF 768 (893)
Q Consensus 696 ~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fvn~-l~~~~----k~~~~ 768 (893)
+. .++. .+.+.........++..|+|++++++.++++++++|++|+|++|++.+++|++. +++++ +.++|
T Consensus 672 ~~~~~~l~---~~~~~~~~~~~~~l~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~f~~~~l~n~Yi~~~k~~lw 748 (861)
T TIGR00392 672 LLTYANLD---KFDPLFNSVAVEKFPEEDRWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNWYIRIIRDRLY 748 (861)
T ss_pred HHHHhccc---cCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhHHhc
Confidence 76 3221 111000000122456789999999999999999999999999999999999975 76643 33444
Q ss_pred CCCCC---cccHHHHHHHHHHHHHHhcccccchHHHHHHHhhccCCCCCeeeccCCCCChhhhh-hHHHHHHHHHH---h
Q psy2890 769 DNNKN---TNNDILLYEGMSIFLRVLNPIAPHITHILWKELKYSIQQGDILNACWPKIDSLALE-EEKEEVKLIIQ---I 841 (893)
Q Consensus 769 ~~~~~---~~~~~~l~~~l~~ll~LL~P~~P~isEEIwq~L~~~~~~~sI~~~~wP~~d~~~~~-~~~~~~~~vv~---i 841 (893)
...+. .+++++++.+++.+++||+|||||+|||||+.|+...+++||+.++||++++...+ ..+..++.+.+ .
T Consensus 749 ~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~aeeiw~~L~~~~~~~si~~~~wP~~~~~~~d~~~~~~~~~l~~~i~~ 828 (861)
T TIGR00392 749 CEAKDNDKRAAQTTLYYALLTLVRLLAPFLPHTAEEIYQNLPGGEEEESVHLNLWPEVDEEFIDEALEANMAIVREIVEA 828 (861)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhccccCCCCceeccCCCCCchhhcCHHHHHHHHHHHHHHHH
Confidence 33221 24678999999999999999999999999999975212369999999998876544 12333443333 3
Q ss_pred hhhcceEEEecCC
Q psy2890 842 NGKFRGHIFVKKK 854 (893)
Q Consensus 842 ~gk~R~~~~v~~~ 854 (893)
..++|...+++..
T Consensus 829 ir~ir~~~~~~~~ 841 (861)
T TIGR00392 829 FLALRDAANKKLR 841 (861)
T ss_pred HHHHHHHhChhhh
Confidence 3466666655544
No 19
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=5e-126 Score=1177.92 Aligned_cols=714 Identities=20% Similarity=0.313 Sum_probs=556.7
Q ss_pred CCCCchHHHHHHHHHHHhCCCcccCCCCCCCCCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCcccccccc
Q psy2890 3 KKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGW 82 (893)
Q Consensus 3 ~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~ 82 (893)
+.|||.++|++|+++|+++++|++..+.+ .++++|++++||||+||.|||||+++++++|+++||+||+||+|++++||
T Consensus 6 ~~~~~~~~E~~~~~~W~e~~~f~~~~~~~-~~~~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~Gw 84 (1159)
T PLN02882 6 KDFSFPKQEEKILSLWSEIDAFKTQLKRT-EGLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGW 84 (1159)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccccccc-CCCCCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCcc
Confidence 67999999999999999999999865432 34788999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHc-CCC----------------HHHHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHHHH
Q psy2890 83 DAFGMPAENAAILN-NTS----------------PAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLK 145 (893)
Q Consensus 83 D~~G~pie~~a~~~-g~~----------------~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~ 145 (893)
||||+|||.+++++ |++ |++|+.++++.|++++++||+++||+++|.|+++.|.+.++|+|.+
T Consensus 85 D~hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~ 164 (1159)
T PLN02882 85 DCHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQ 164 (1159)
T ss_pred CCCCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHH
Confidence 99999999998643 542 6789999999999999999999999999999999999999999999
Q ss_pred HHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHHHH
Q psy2890 146 MFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQV 225 (893)
Q Consensus 146 L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~ 225 (893)
|+++|+||++.++|+|||.|+|+||+.|+. ++|++.
T Consensus 165 l~~kGliyr~~~~v~wcp~~~TaLs~~E~~----------~~Yk~~---------------------------------- 200 (1159)
T PLN02882 165 LFEKGLVYKGFKVMPYSTACKTPLSNFEAG----------LNYKDV---------------------------------- 200 (1159)
T ss_pred HHHCCCEEecceeEeecCCCCCCcchhhhh----------hhcccC----------------------------------
Confidence 999999999999999999999999997763 234432
Q ss_pred hhcccccceeeeeccccCCCCCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhh-c-------hHHHHHHHH
Q psy2890 226 NWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAAR-N-------NLLLQKFIL 297 (893)
Q Consensus 226 ~wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~-~-------~~~~~~~~~ 297 (893)
.+.++||+|++.++.. +.+++||||||||||||+||||||+..|+..... . ...+..+.+
T Consensus 201 ----~~~si~v~F~l~~~~~--------~~~l~iwTTtPwTLpsn~Al~VnP~~~Y~~v~~~~~~~~~i~a~~~~~~~~~ 268 (1159)
T PLN02882 201 ----SDPAVMVSFPIVGDPD--------NASFVAWTTTPWTLPSNLALCVNPNFTYVKVRNKYTGKVYIVAESRLSALPT 268 (1159)
T ss_pred ----CCcEEEEEEEecCCCC--------CcEEEEEeCCccccccCeEEEECCCCcEEEEEecCCCeEEEEhHHHHHHHHh
Confidence 3567899999974321 3689999999999999999999999998765421 1 112333433
Q ss_pred HHhhc--C------cc-cccccccccc-ccceEEEcCC------CCCeeeEEEecccccCCCCCcc-ccCCCCCHHHHHH
Q psy2890 298 EYKKN--N------NI-ESNNLLKKSI-LTQLKVLHPL------TNQEIKVFVVNYVIEKSYGRAA-IGVPAHNKHDFYF 360 (893)
Q Consensus 298 ~~~~~--~------~~-~~~~~~~~g~-~~g~~~~~P~------~~~~ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~~ 360 (893)
+.... + .. .....+++|. |.|++|.+|+ .++++||+.++||+ +++|||+ |++||||++||++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~y~p~~~~~~~~~~~~~~Vi~~~~V~-~~~GTGiVh~aPahG~~Dy~v 347 (1159)
T PLN02882 269 AKPKSKKGSKPENAAEGYEVLAKVPGSSLVGKKYEPLFDYFSEFSDTAFRVVADDYVT-DDSGTGVVHCAPAFGEDDYRV 347 (1159)
T ss_pred hhhcccccccccccccccEEEEEecchhhcCCEEECCccccccccCceEEEEccCccC-CCCCcceeEecCCCChhHHHH
Confidence 32110 0 00 1144567787 8999998776 24689999999999 9999999 9999999999999
Q ss_pred HHHcCC-----ceeeeecCCCCCccccccccccccCCccccccCCCCCCCCHHHHHHHHHHHHHHcCCCCe---------
Q psy2890 361 AKKHSL-----LIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNK--------- 426 (893)
Q Consensus 361 ~~~~~l-----~~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~~s~~~~gl~~~~a~~~i~~~L~~~~~~~~--------- 426 (893)
|++||| ++.++||+ +|+ |++ +.++|.|+.+++|++.|++.|++.|.+-+
T Consensus 348 ~~~~gl~~~~~~~~~~vd~-~G~---------~~~-------~~~~~~G~~v~eA~~~Ii~~Lk~~g~L~~~~~~~Hsyp 410 (1159)
T PLN02882 348 CLANGIIEKGGNLPVPVDD-DGC---------FTE-------KVTDFSGRYVKDADKDIIAAIKAKGRLVKSGSITHSYP 410 (1159)
T ss_pred HHHcCCCccccCccceECC-Cce---------Ecc-------CCcccCCCCHHHhhHHHHHHHHHCCCccceeeeecCCC
Confidence 999999 78999987 553 222 25789999999999999999999998421
Q ss_pred ---------------------------------eeEe---------------eecceeeccccccCCccCeEEcCCCCee
Q psy2890 427 ---------------------------------KNIF---------------RLRDWAISRQRYWGTPIPIIYCDSCGSV 458 (893)
Q Consensus 427 ---------------------------------~~~~---------------~l~DW~ISRQr~WG~pIPi~~~~~~~~v 458 (893)
+++| +++|||||||||||||||+|+|++|+.+
T Consensus 411 ~cwR~~tpli~~a~~qWFi~~~~~k~~~l~~~~~i~w~P~~~~~~r~~~wl~~~~DW~ISRqR~WGtPIPvw~~~~~~~~ 490 (1159)
T PLN02882 411 FCWRSDTPLIYRAVPSWFVKVEEIKDRLLENNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPIWISDDGEEV 490 (1159)
T ss_pred EeeCCCCEEEEEecceeEEEcHHHHHHHHHhhCCcEEECCcchhhHHHHHHhcCcccceeeccccCCccceEEeCCCCeE
Confidence 1122 4689999999999999999999988754
Q ss_pred ecCC--CCCCccCCCccCCCCcc-cccccccc-cccCC-CC---ccceecCCccccccccc-chhhhhcCCCccccCCCh
Q psy2890 459 PVPE--KDLPVILPETCVPNNLL-KENKKFLH-VSCPK-CN---KLAFRETDTMDTFVDSS-WYYMRYISPKLENFMIDD 529 (893)
Q Consensus 459 ~v~~--~~lpv~lp~~~~~g~~l-~~~~~~~~-~~c~~-~g---~~~~re~d~~D~WfdSs-w~~~~~~~p~~~~~~~~~ 529 (893)
.+.. ++|.. .. |.+. +.+.+|+. +++|+ || ..++|++|||||||||+ |+|+..++|+.+ +
T Consensus 491 ~~~~s~~el~~----~~--~~~~~dlh~~~id~i~~p~~~~~~~~~~~r~~dVlD~WFdSg~~p~a~~~~p~e~-----~ 559 (1159)
T PLN02882 491 VVIGSIAELEK----LS--GVKVTDLHRHFIDHITIPSSRGPEFGVLRRVDDVFDCWFESGSMPYAYIHYPFEN-----K 559 (1159)
T ss_pred EecCcHHHHHH----Hh--CCchhhccccchhhhccccccCCchhceEecCceeeeeeccCccHHHHcCCcccC-----h
Confidence 4322 11110 00 1110 11223332 22332 33 36999999999999996 999999999742 3
Q ss_pred hhhhccCCceeeecchhhHHHHHHHHHHHHHHHHHhcCccCCCccceeeecceEeceeeeecccCCCCccccCCCccccc
Q psy2890 530 NKINYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKIT 609 (893)
Q Consensus 530 ~~~~~~~PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~ 609 (893)
+.|+.++|+|++++|.||.. .||+..++... .+.+.+||++|++||||+ | ++|
T Consensus 560 ~~f~~~~PaD~i~eG~Dq~R-----gWf~~ll~~s~-~l~~~~pfk~VivhG~vl-------d-e~G------------- 612 (1159)
T PLN02882 560 ELFEKNFPADFVAEGLDQTR-----GWFYTLMVLST-ALFDKPAFKNLICNGLVL-------A-EDG------------- 612 (1159)
T ss_pred hHhhccCCceEEEEecchhh-----hHHHHHHHHHH-HhcCCCCcceeEEccEEE-------C-CCC-------------
Confidence 45677899999999999954 13444444433 356789999999999999 4 566
Q ss_pred ccCCCCccceeeecCCCcceeccccccccCCCCccCccchhhhhCchhHHHHHHhcCCC-CCCcccChhhhhHH-HHHHH
Q psy2890 610 LDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPP-EKNLEWSDIGIEGA-YRFLN 687 (893)
Q Consensus 610 ~~~~g~~~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~~~~~-~~d~~~~~~~i~~~-~~~l~ 687 (893)
+|||||+||+|+|.+++++||||+||||++++... ++|++|+++.+.+. +++++
T Consensus 613 ------------------------~KMSKSlGNvIdP~evi~~YGADaLR~~Ll~s~~~~~~d~~fs~~~v~~~~~~~l~ 668 (1159)
T PLN02882 613 ------------------------KKMSKSLKNYPDPNEVIDKYGADALRLYLINSPVVRAEPLRFKEEGVFGVVKDVFL 668 (1159)
T ss_pred ------------------------CCcccCCCCCCCHHHHHHHhCcHHHHHHHHhCCcccCcCcccCHHHHHHHHHHHHH
Confidence 89999999999999999999999999999965433 78899999999876 56999
Q ss_pred HHHHHHHhhhhccccc-----cccccccCCccc-cCCChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy2890 688 RVWNFSYILAPRIINI-----INLNIFHNDFSV-IKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIFNILER 761 (893)
Q Consensus 688 rl~n~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fvn~l~~ 761 (893)
++||+++++..+.... ..+.+... ... ...+..|+||++++++++++++++|++|+|++|++.+++|++++++
T Consensus 669 kl~Na~rfl~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~D~wIls~l~~li~~v~~~me~y~f~~A~~~I~~Fv~~lsN 747 (1159)
T PLN02882 669 PWYNAYRFLVQNAKRLEVEGGAPFVPLDL-AKLQNSANVLDRWINSATQSLVKFVREEMGAYRLYTVVPYLVKFIDNLTN 747 (1159)
T ss_pred HHHHHHHHHHhhhhhhhhccccCCCcccc-ccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhH
Confidence 9999998887633211 11211000 000 1235789999999999999999999999999999999999986654
Q ss_pred -hhc---ccccCCCC---CcccHHHHHHHHHHHHHHhcccccchHHHHHHHhhccC--CCCCeeeccCCCCChhhhh-hH
Q psy2890 762 -INS---ETKFDNNK---NTNNDILLYEGMSIFLRVLNPIAPHITHILWKELKYSI--QQGDILNACWPKIDSLALE-EE 831 (893)
Q Consensus 762 -~~k---~~~~~~~~---~~~~~~~l~~~l~~ll~LL~P~~P~isEEIwq~L~~~~--~~~sI~~~~wP~~d~~~~~-~~ 831 (893)
|+. .+.+.+.+ ..+++.+|+++|+.+++||+|||||+||+||++|+... ..+|||.+.||++++..++ +.
T Consensus 748 ~YIe~~Kprl~~~~~~~~~~~al~tL~~vL~~l~~LLaPfmPf~aEeI~q~L~~~~~~~~~SVh~~~~P~~~~~~~d~~l 827 (1159)
T PLN02882 748 IYVRFNRKRLKGRTGEEDCRTALSTLYNVLLTSCKVMAPFTPFFTEVLYQNLRKVLPGSEESIHYCSFPQVDEGELDERI 827 (1159)
T ss_pred HHHHhCCHhhhCCCChHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHhccccCCCCCceeecCCCCcchhhcchhH
Confidence 542 23333222 23578899999999999999999999999999997521 2579999999999876655 22
Q ss_pred HHHHHHHHHh---hhhcceEEEecCC
Q psy2890 832 KEEVKLIIQI---NGKFRGHIFVKKK 854 (893)
Q Consensus 832 ~~~~~~vv~i---~gk~R~~~~v~~~ 854 (893)
+..++.+..| ..++|.+.+++.+
T Consensus 828 e~~~~~~~~ii~~~r~~r~~~~~~~~ 853 (1159)
T PLN02882 828 EQSVSRMQTVIELARNIRERHNKPLK 853 (1159)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 3445544444 3355555555444
No 20
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.1e-125 Score=1159.33 Aligned_cols=689 Identities=20% Similarity=0.278 Sum_probs=532.7
Q ss_pred CCCCchHHHHHHHHHHHhCCCcccCCCCCCCCCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCcccccccc
Q psy2890 3 KKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGW 82 (893)
Q Consensus 3 ~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~ 82 (893)
.++|+.++|++||++|+++++|+...+.+ .++++|++++|||||||.||||||+|++++|+++||+||+||+|+|++||
T Consensus 22 m~~~~~~~E~~~~~~W~~~~~y~~~~~~~-~~~~~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGw 100 (961)
T PRK13804 22 MRAGLPQKEPEIQARWEEIDLYKKLREQA-KGRPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGW 100 (961)
T ss_pred CCCChHHhHHHHHHHHHHCCCcccccccc-CCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCc
Confidence 36899999999999999999999865322 24788999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHcC----CC------------HHHHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHHHHH
Q psy2890 83 DAFGMPAENAAILNN----TS------------PAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKM 146 (893)
Q Consensus 83 D~~G~pie~~a~~~g----~~------------~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L 146 (893)
||||+|||.+++++. .. |++|+.++++.|+++|++||++.||++.|.|+||.|+++++++|.+|
T Consensus 101 D~hGlPiE~~vek~~~~~~~~~~~~~~~~f~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~F~~l 180 (961)
T PRK13804 101 DCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKF 180 (961)
T ss_pred CCCCcHHHHHHHHhhhhcCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHHHHH
Confidence 999999999987653 32 56799999999999999999999999999999999999999999999
Q ss_pred HhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHHHHh
Q psy2890 147 FKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVN 226 (893)
Q Consensus 147 ~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~ 226 (893)
+++|+||++.++|+|||.|+|+||++||. +++.
T Consensus 181 ~~kGliyr~~kpV~Wcp~~~TaLa~~Eve------------y~~~----------------------------------- 213 (961)
T PRK13804 181 AAKGQLYRGSKPVMWSVVERTALAEAEIE------------YHDI----------------------------------- 213 (961)
T ss_pred HHCCCEEeCCcceecCCCCCCCccchhcc------------cccc-----------------------------------
Confidence 99999999999999999999999997763 3321
Q ss_pred hcccccceeeeeccccCCCCCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhc---------hHH---HHH
Q psy2890 227 WIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARN---------NLL---LQK 294 (893)
Q Consensus 227 wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~---------~~~---~~~ 294 (893)
+|.++||+|++.++.. .+..+.+++||||||||||||+||||||+++|+...... +.. ..+
T Consensus 214 ---~s~~~~v~F~~~~~~~----~~~~~~~lviwTTtPwTl~an~aiav~p~~~Y~~v~~~~~~~~~~~~~~e~~iva~~ 286 (961)
T PRK13804 214 ---ESDTIWVKFPVKDGKG----ILDSGTYVVIWTTTPWTIPANRAISYSPDIEYGLYEVTGAENDFWAKPGERLVVADA 286 (961)
T ss_pred ---cCceEEEEEEecCccc----ccCCCCeEEEEeCCchhhhhCeEEEECCCCceEEEEeccccccccccCCcEEEeHHH
Confidence 4678999999863210 011246899999999999999999999999986544321 000 022
Q ss_pred HHHHHhhcCccc--ccccccccc-ccceEEEcCCCCC-----eeeEEEecccccCCCCCcc-ccCCCCCHHHHHHHHHcC
Q psy2890 295 FILEYKKNNNIE--SNNLLKKSI-LTQLKVLHPLTNQ-----EIKVFVVNYVIEKSYGRAA-IGVPAHNKHDFYFAKKHS 365 (893)
Q Consensus 295 ~~~~~~~~~~~~--~~~~~~~g~-~~g~~~~~P~~~~-----~ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~~~~~~~ 365 (893)
+++.+..+.... ....+++|. |.|++|.||++++ ++||+.++||+ +++|||+ |++||||++||+++++||
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~~~~~~~~~pvi~~~~V~-~~~GTG~Vh~aPahg~~Dy~~~~~~~ 365 (961)
T PRK13804 287 LAESVAKKAGVESFERLADVKGEDLEKIVCAHPLDGLDGYEFEVPVLDGDHVT-DDAGTGFVHTAPGHGREDFNVWMKYG 365 (961)
T ss_pred HHHHHHHHhCCCCcEEEEEEEhhhccCCEEECCCCCcccccceeEEEecCccC-CCCCCceEEeCCCCCHHHHHHHHHcC
Confidence 333332221111 133456676 8999999999999 89999999999 9999999 999999999999999999
Q ss_pred C-ceeeeecCCCCCccccccccccccC-CccccccCCCCCCCCHHHHHHHHHHHHHHcCCCCe-----------------
Q psy2890 366 L-LIKQVINVKNKSYSDKIWKDWYIDK-ENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNK----------------- 426 (893)
Q Consensus 366 l-~~~~vi~~~~g~~~~~~~~~~~~~~-g~~~~~~s~~~~gl~~~~a~~~i~~~L~~~~~~~~----------------- 426 (893)
| |+.++|++ +|+ |++. |...-.+.+.|.|+.+.+|++.|++.|++.|.+-+
T Consensus 366 l~~~~~~vd~-~G~---------~~~~~~~~~g~~v~~~~G~~~~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~p 435 (961)
T PRK13804 366 RTEIPVTVDE-DGF---------YTENAPGFGGARVIDDEGKKYGDANKAVIEKLIEAGLLLARGRLKHSYPHSWRSKKP 435 (961)
T ss_pred CCcccccCCC-CeE---------EccCCCccccccccccCCcchhhhhHHHHHHHHhCCCcccccceecCCCccCCCCCe
Confidence 9 99999987 553 2221 00000012248999999999999999999998311
Q ss_pred --------------------------------eeEe--------------eecceeeccccccCCccCeEEcCCCCeeec
Q psy2890 427 --------------------------------KNIF--------------RLRDWAISRQRYWGTPIPIIYCDSCGSVPV 460 (893)
Q Consensus 427 --------------------------------~~~~--------------~l~DW~ISRQr~WG~pIPi~~~~~~~~v~v 460 (893)
.++| +++||||||||+||+|||+|||++|+.+..
T Consensus 436 ii~r~t~QWFi~~~~~~~~~~~~k~~al~~i~~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP~~~~~~~~~~~~ 515 (961)
T PRK13804 436 VIFRNTPQWFISMDKDLGDGTTLRSRALDAIDKTRFVPAAGQNRLYNMIEDRPDWVISRQRAWGVPIPIFVAEDGEILMD 515 (961)
T ss_pred EEEeccccccEEcCCcccchHHHHHHHHHHHhccEEECHHHHHHHHHHHhcCccceeeeeccCCceeeEEEcCCCCEecc
Confidence 0111 356999999999999999999976544322
Q ss_pred CCCCCCccCCCccC-CCCcc--c-ccccccccccC-CCCccceecCCccccccccc--chhhhhcCCCccccCCChhhhh
Q psy2890 461 PEKDLPVILPETCV-PNNLL--K-ENKKFLHVSCP-KCNKLAFRETDTMDTFVDSS--WYYMRYISPKLENFMIDDNKIN 533 (893)
Q Consensus 461 ~~~~lpv~lp~~~~-~g~~l--~-~~~~~~~~~c~-~~g~~~~re~d~~D~WfdSs--w~~~~~~~p~~~~~~~~~~~~~ 533 (893)
+ +++..+.+.+. .|.+. . ...+++ .++ .|+..++|++|||||||||+ |.+.. . .++++
T Consensus 516 ~--~~~~~~~~~~~~~g~~~w~~~~~~~~~--~~~~~~~~~~~r~~DvlDvWFdSg~s~~~~~----~------~~~~~- 580 (961)
T PRK13804 516 E--EVNARIADAFEEEGADAWFAEGAKERF--LGGFHPNGEFTKVTDILDVWFDSGSTHAFVL----E------DRPDL- 580 (961)
T ss_pred H--HHHHHHHHHHHhcCCccccccCHHHhc--CcccCcccceEecCcceeeeecCCCCccccc----c------CCccc-
Confidence 1 12111100000 02110 0 011121 111 25678999999999999995 43321 1 11222
Q ss_pred ccCCceeeecchhhHHHHHHHHHHHHHHHHHhcCccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCC
Q psy2890 534 YWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKK 613 (893)
Q Consensus 534 ~~~PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~ 613 (893)
.+|+|+|++|+|| |++ ||++.+|... .+.+.+||++|++||||+ | .+|
T Consensus 581 -~~PaD~~~eG~Di---~rg--WF~s~ll~s~-~~~~~~P~k~V~~HG~vl-------d-~~G----------------- 628 (961)
T PRK13804 581 -KWPADLYLEGSDQ---HRG--WFNSSLLESC-GTRGRAPYKAVLTHGFTL-------D-EKG----------------- 628 (961)
T ss_pred -CCCceEEEEEccc---ccH--HHHHHHHHHH-HhcCCCChhhEEEeccEE-------C-CCC-----------------
Confidence 4799999999998 422 3444444444 457789999999999998 4 566
Q ss_pred CCccceeeecCCCcceeccccccccCCCCccCccchhhhhCchhHHHHHHhcCCCCCCcccChhhhhHHHHHHHHHHHHH
Q psy2890 614 NKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFS 693 (893)
Q Consensus 614 g~~~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~~~~l~rl~n~~ 693 (893)
+|||||+||+|+|.++|++||||++|||+++ +++++|++|+++.++++..++++|||++
T Consensus 629 --------------------~KMSKSlGNvIdP~~ii~~yGaD~lRl~lls-~~~~~D~~fs~~~l~~~~~~~~kL~N~~ 687 (961)
T PRK13804 629 --------------------EKMSKSLGNTVSPQDVIKQSGADILRLWVAS-VDYSDDQRIGKEILKQVSETYRKLRNTL 687 (961)
T ss_pred --------------------CCccCCCCCcCCHHHHHHhcCHHHHHHHHHh-CCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999996 5789999999999999999999999999
Q ss_pred HhhhhccccccccccccCCccccCCChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHHHHhh----ccccc
Q psy2890 694 YILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIF-NILERIN----SETKF 768 (893)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fv-n~l~~~~----k~~~~ 768 (893)
+++..++. .+.+.........+...|+|+++++++++++++++|++|+|++|++.+++|+ +++++++ +.++|
T Consensus 688 rf~l~nl~---~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~lsn~Yle~~K~rl~ 764 (961)
T PRK13804 688 RWLLGNLA---HFDPGEDVVAYADLPELERYMLHRLNELDGLVREAYDAYDFKRIYKALVNFVNVDLSAFYFDIRKDALY 764 (961)
T ss_pred HHHHhccc---cCCcccccCChhhcCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Confidence 98865332 2211000001234567899999999999999999999999999999999999 5776643 44555
Q ss_pred CCCC----CcccHHHHHHHHHHHHHHhcccccchHHHHHHHhhccCCCCCeeeccCCCCChhhhh
Q psy2890 769 DNNK----NTNNDILLYEGMSIFLRVLNPIAPHITHILWKELKYSIQQGDILNACWPKIDSLALE 829 (893)
Q Consensus 769 ~~~~----~~~~~~~l~~~l~~ll~LL~P~~P~isEEIwq~L~~~~~~~sI~~~~wP~~d~~~~~ 829 (893)
.... ..+++.+|+.+++.+++||+|||||+|||||++|+.. .++||+.+.||++++...+
T Consensus 765 ~~~~~~~~r~~~~~vL~~il~~l~~lLaPi~P~~aEeiw~~L~~~-~~~sv~l~~wP~~~~~~~d 828 (961)
T PRK13804 765 CDAPSSLRRRAAQTVFYEIFVRLTKWLAPILPFTAEEAWLYRYPE-EEVSVHLEQFPETPAFWRD 828 (961)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhcccC-CCCceEecCCCCCcchhCC
Confidence 4321 2357889999999999999999999999999999841 2569999999998765433
No 21
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=1.1e-120 Score=1120.37 Aligned_cols=684 Identities=21% Similarity=0.321 Sum_probs=529.2
Q ss_pred CCCchHHHHHHHHHHHhCCCcccCCCCCCCCCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccc
Q psy2890 4 KYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWD 83 (893)
Q Consensus 4 ~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D 83 (893)
+.|+.++|++||++|+++++|++..+.+ .+++|+|++|||||||.|||||++|++++|+++||+||+||+|+|++|||
T Consensus 2 ~~~~~~~E~~~~~~W~~~~~y~~~~~~~--~~~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D 79 (974)
T PLN02843 2 RANSVTREPEIQKLWEENQVYKRVSDRN--NGESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWD 79 (974)
T ss_pred CCChHHhhHHHHHHHHHCCCcccccccc--CCCCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccC
Confidence 4688999999999999999999865422 15679999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHc-------CCC-------HHHHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHHHHHHhc
Q psy2890 84 AFGMPAENAAILN-------NTS-------PAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKR 149 (893)
Q Consensus 84 ~~G~pie~~a~~~-------g~~-------~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~ 149 (893)
|||+|||.+++++ +++ |++|+.++++.|+++|++||++.||+++|.|+||.|.+.++++|.+|+++
T Consensus 80 ~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~ 159 (974)
T PLN02843 80 CHGLPIELKVLQSLDQEARKELTPIKLRAKAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLN 159 (974)
T ss_pred CCCcHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHC
Confidence 9999999998543 223 56789999999999999999999999999999999999999999999999
Q ss_pred CcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHHHHhhcc
Q psy2890 150 GIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIG 229 (893)
Q Consensus 150 Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~wi~ 229 (893)
|+||++.+||+|||.|+|+||+.|+. +++. .
T Consensus 160 GlIyr~~kpV~Wcp~~~Talae~Eve------------y~e~-------------------------------------~ 190 (974)
T PLN02843 160 GYIYRGRKPVHWSPSSRTALAEAELE------------YPEG-------------------------------------H 190 (974)
T ss_pred CCEEecceeeeecCCCCCcchHhHhc------------ccCC-------------------------------------c
Confidence 99999999999999999999998764 3220 1
Q ss_pred cccceeeeeccccCCCCCC---ccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhc------------------
Q psy2890 230 KSKGIFLAFPHNIKDPNKN---NKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARN------------------ 288 (893)
Q Consensus 230 ~s~~~~i~f~~~~~~~~~~---~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~------------------ 288 (893)
.|.++||+|++.++..... .....+.+++||||||||||||+||||||+..|+......
T Consensus 191 ~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~lviwTTtPwTlpan~AiaVnP~~~Y~~v~~~~~~~d~r~~~~~~~~~~~~ 270 (974)
T PLN02843 191 VSKSIYVAFPVVSPSETSPEELEEFLPGLSLAIWTTTPWTMPANAAVAVNDKLQYSVVEVQSFSEDESTSGGNKKKRPGN 270 (974)
T ss_pred cCceEEEEEEecCCccccccccccccccceEEEEeCcchhhccCcEEEECCCCceEEEEecccccccccccccccccccc
Confidence 3567899998874210000 0001135899999999999999999999999986554321
Q ss_pred -------------hHHHHHHHHHHhhcCcccccccccccc-ccceEEEcCCCCCeeeEEE-ecccccCCCCCcc-ccCCC
Q psy2890 289 -------------NLLLQKFILEYKKNNNIESNNLLKKSI-LTQLKVLHPLTNQEIKVFV-VNYVIEKSYGRAA-IGVPA 352 (893)
Q Consensus 289 -------------~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~~~~P~~~~~ipv~~-~~~V~~~~~GTG~-~~~Pa 352 (893)
...+..+.+.+. .......++.|. |.|+++.||++++++||+. ++||+ +++|||+ |++||
T Consensus 271 ~~~~~~~~~~iva~~l~~~~~~~~~---~~~~~~~~~~g~~L~g~~~~~P~~~~~~pii~~~~~V~-~~~GTG~Vh~aPa 346 (974)
T PLN02843 271 VLKEQQKLFLIVATDLVPALEAKWG---VKLVVLKTFPGSDLEGCRYIHPLYNRESPVVIGGDYIT-TESGTGLVHTAPG 346 (974)
T ss_pred ccccccCceEEeHHHHHHHHHHhhC---CceEEEeeechHHcCCCEEECCCCCCceeEEecCCccC-CCCCCCeEEeCCC
Confidence 011122222221 111144567787 8999999999999999975 89999 9999999 99999
Q ss_pred CCHHHHHHHHHcCCceeeeecCCCCCccccccccccccCCccccc-cCCCCCCCCHH-HHHHHHHHHHHHcCCCCe----
Q psy2890 353 HNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCI-NSCKYNNMSHK-EATNAISTDLIKLGLGNK---- 426 (893)
Q Consensus 353 h~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~-~s~~~~gl~~~-~a~~~i~~~L~~~~~~~~---- 426 (893)
||++||+++++|||+++++||+ +|+ +. +.|+|.|+.+. +|+++|++.|++.|.+.+
T Consensus 347 Hg~~Dy~~~~~~~l~~~~~vd~-~G~-----------------~~~~~~~~~G~~v~~~a~~~Ii~~L~~~g~l~~~e~~ 408 (974)
T PLN02843 347 HGQEDYITGLKYGLPLLSPVDD-AGK-----------------FTEEAGQFSGLSVLGEGNAAVVEALDEAGSLLMEEAY 408 (974)
T ss_pred CCHHHHHHHHHcCCCcccccCC-Cce-----------------EccCCcccCCcEehhcchHHHHHHHHHCCCeeeeeee
Confidence 9999999999999999999987 553 32 24789999997 899999999999998321
Q ss_pred ------------e--------------------------eEe--------------eecceeeccccccCCccCeEEcCC
Q psy2890 427 ------------K--------------------------NIF--------------RLRDWAISRQRYWGTPIPIIYCDS 454 (893)
Q Consensus 427 ------------~--------------------------~~~--------------~l~DW~ISRQr~WG~pIPi~~~~~ 454 (893)
. ++| +++||||||||+||+|||+|+|++
T Consensus 409 ~H~yp~cwR~~~pvi~r~t~QWFi~~~~~k~~al~~~~~v~~~P~~~~~r~~~~i~~~~DWcISRQr~WG~pIP~~~~~~ 488 (974)
T PLN02843 409 GHKYPYDWRTKKPTIFRATEQWFASVEGFRQAALDAIDKVKWIPAQGENRIRAMVSGRSDWCISRQRTWGVPIPVFYHVE 488 (974)
T ss_pred cCCCCccCCCCCeEEEEecCceeEeCHHHHHHHHHHHhccEEEChHHHHHHHHHHhcCcceeeeeccccccEEEEEEEcC
Confidence 1 111 478999999999999999999999
Q ss_pred CCeeecCCCCCCccCCCccCC-CCcc---cccccccccccCCCCccceecCCcccccccccchhhhhcCCCccccCCChh
Q psy2890 455 CGSVPVPEKDLPVILPETCVP-NNLL---KENKKFLHVSCPKCNKLAFRETDTMDTFVDSSWYYMRYISPKLENFMIDDN 530 (893)
Q Consensus 455 ~~~v~v~~~~lpv~lp~~~~~-g~~l---~~~~~~~~~~c~~~g~~~~re~d~~D~WfdSsw~~~~~~~p~~~~~~~~~~ 530 (893)
|+.+.+..... ..+.+.+.. |+.. ....++....+..++..+.|++|||||||||+..+......
T Consensus 489 ~~~~~~~~~~i-~~~~~~~~~~g~~~w~~~~~~~l~p~~~~~~~~~~~k~~DvlDvWFdSg~~~~~~~~~---------- 557 (974)
T PLN02843 489 TKEPLMNEETI-AHVKSIVAQKGSDAWWYMDVEDLLPEKYRDKASDYEKGTDTMDVWFDSGSSWAGVLGS---------- 557 (974)
T ss_pred CCCEeechhhH-HHHHHHHHhhCCcccccCCHHHhCcccccCchhhhEecccccccchhcCCChHHHhcc----------
Confidence 88654322110 000000000 1100 00012222222223567999999999999997322211110
Q ss_pred hhhccCCceeeecchhhHHHHHHHHHHHHHHHHHhcCccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccc
Q psy2890 531 KINYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITL 610 (893)
Q Consensus 531 ~~~~~~PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~ 610 (893)
..++++|+|+|++|+||...| |...++... .+.+..||+++++||+|+ | .+|
T Consensus 558 ~~~~~~PaDl~~eG~Di~rgW-----f~s~l~~~~-~~~g~~Pfk~v~~HG~vl-------d-~~G-------------- 609 (974)
T PLN02843 558 REGLSYPADLYLEGSDQHRGW-----FQSSLLTSV-ATKGKAPYKSVLTHGFVL-------D-EKG-------------- 609 (974)
T ss_pred ccccCCCceeeeeeccccchH-----HHHHHHHHH-HhcCCCccceEEEeccEE-------C-CCC--------------
Confidence 113468999999999995432 434333333 456778999999999998 4 566
Q ss_pred cCCCCccceeeecCCCcceeccccccccCCCCccCccchhh---------hhCchhHHHHHHhcCCCCCCcccChhhhhH
Q psy2890 611 DKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQIN---------TYGADSTRLFIIFSAPPEKNLEWSDIGIEG 681 (893)
Q Consensus 611 ~~~g~~~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~---------~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~ 681 (893)
+|||||+||+|+|.++|+ +||||+||||+++ +.+++|++|+.+.++.
T Consensus 610 -----------------------~KMSKSlGNvI~p~~vi~~~~~~~~~~~yGaD~lR~~l~~-~~~~~d~~~s~~~l~~ 665 (974)
T PLN02843 610 -----------------------FKMSKSLGNVVDPRLVIEGGKNQKQEPAYGADVLRLWVAS-VDYTGDVLIGPQILKQ 665 (974)
T ss_pred -----------------------CCcCCCCCCcCCHHHHHhhccccccccccChHHHHHHHHh-cccCCCceeCHHHHHH
Confidence 899999999999999999 7999999999996 5789999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccccccccccccCCccccCCChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HHH
Q psy2890 682 AYRFLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIFN-ILE 760 (893)
Q Consensus 682 ~~~~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fvn-~l~ 760 (893)
+.++++||||.++++..++.. +.+ ........+...|+|++++++++++++.++|++|+|++|++.+++|+. +++
T Consensus 666 ~~~~~~kl~n~~rf~lgnl~~---~~~-~~~~~~~~~~~~D~wiLskL~~li~~v~~aye~y~f~~A~~~i~~f~~~dls 741 (974)
T PLN02843 666 MSDIYRKLRGTLRYLLGNLHD---WKP-DNAVPYEDLPSIDKYALFQLENVVNEIEESYDNYQFFKIFQILQRFTIVDLS 741 (974)
T ss_pred HHHHHHHHHHHHHHHHhCccC---CCc-ccccCccccCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 999999999999998764322 211 000012345678999999999999999999999999999999999974 566
Q ss_pred H-hh---cccccCCCC----CcccHHHHHHHHHHHHHHhcccccchHHHHHHHhhccC---CCCCeeeccCCCCChhh
Q psy2890 761 R-IN---SETKFDNNK----NTNNDILLYEGMSIFLRVLNPIAPHITHILWKELKYSI---QQGDILNACWPKIDSLA 827 (893)
Q Consensus 761 ~-~~---k~~~~~~~~----~~~~~~~l~~~l~~ll~LL~P~~P~isEEIwq~L~~~~---~~~sI~~~~wP~~d~~~ 827 (893)
+ |+ +.++|.+.. ..+++.+|+.+++.+++||+|||||+|||||+.|+... ..+||+.+.||++++..
T Consensus 742 n~Yie~~Kprly~~~~~~~~r~~~qtvL~~iLe~l~~LLaPimPf~aEEiw~~L~~~~~~~~~~sv~~~~~P~~~~~~ 819 (974)
T PLN02843 742 NFYLDVAKDRLYVGGTTSFTRRSCQTVLAAHLLSLLRAIAPILPHLAEDAWQNLPFQEDGSAAESVFEAGWPTPNEEW 819 (974)
T ss_pred HHHHHhcchhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccccccCCCCCceEecCCCCCchhh
Confidence 5 33 345554321 12567889999999999999999999999999997421 14699999999987654
No 22
>KOG0432|consensus
Probab=100.00 E-value=3.9e-118 Score=1009.32 Aligned_cols=686 Identities=24% Similarity=0.374 Sum_probs=542.2
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCcccCCCCCCCCCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCcccccc
Q psy2890 1 MQKKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPM 80 (893)
Q Consensus 1 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~ 80 (893)
|.+.|+|..+|..|+.+|++.+.|++.... ++...|.++.||||++|.||||||++.++.|+++||.||.||.|+|++
T Consensus 42 ~~~~y~p~~vE~~wy~ww~k~g~fkp~~~~--~~~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~P 119 (995)
T KOG0432|consen 42 LPAAYSPAYVESAWYKWWEKQGFFKPEYGP--NPGGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVP 119 (995)
T ss_pred ccccCCccchHHHHHHHHHHcCCCCcccCC--CCCCcceeecCCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecC
Confidence 346799999999999999999999987542 236789999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHc-----CCC------------HHHHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHH
Q psy2890 81 GWDAFGMPAENAAILN-----NTS------------PAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIF 143 (893)
Q Consensus 81 G~D~~G~pie~~a~~~-----g~~------------~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f 143 (893)
|+||+|+.++..++|. |.+ .++|.+++...+.+|+++||.++||+|.++|||+...++|.+.|
T Consensus 120 G~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAF 199 (995)
T KOG0432|consen 120 GTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAF 199 (995)
T ss_pred CccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHH
Confidence 9999999887766542 222 57899999999999999999999999999999999999999999
Q ss_pred HHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeece-eeEEecchHHHHHHHHHhhCCCChHHHHH
Q psy2890 144 LKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPM-YYAKITNYAEELLEYVKKKLPYWPKKVRL 222 (893)
Q Consensus 144 ~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~-~~~~l~~~~~~l~~~~~~~~~~~p~~~~~ 222 (893)
.+|+++|+||++.+.|+||+..+|++||.||. +++.+. -++.+ +++...|..
T Consensus 200 vrL~eeglIyR~~rlVNW~~~L~saiSdiEVe------------~~ei~~~t~l~v---------------pGyd~~VeF 252 (995)
T KOG0432|consen 200 VRLHEEGLIYRANRLVNWCPALRSAISDIEVE------------SVEIPGRTLLSV---------------PGYDTKVEF 252 (995)
T ss_pred HHHHhcCceEecCceeeechhHHhhhhhheec------------ceecCCCceEec---------------CCCCcceee
Confidence 99999999999999999999999999998764 333321 22222 222222211
Q ss_pred HHHhhcccccceeeeeccccCCCCCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhchHHHHHHHHHHhhc
Q psy2890 223 MQVNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYKKN 302 (893)
Q Consensus 223 ~~~~wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (893)
- .=..+.|++.++ +..|+|+|||||||+|++||||||+++++++
T Consensus 253 G--------~L~~faY~v~gs----------~~~i~VaTTRpET~lGDvAvAVhP~D~RYk~------------------ 296 (995)
T KOG0432|consen 253 G--------VLYSFAYPVEGS----------DEEIVVATTRPETILGDVAVAVHPDDDRYKH------------------ 296 (995)
T ss_pred e--------eeeEEEEeccCC----------CCeEEEecCCccccccceeEEeCCCCccccc------------------
Confidence 0 013466777733 4589999999999999999999999998753
Q ss_pred CccccccccccccccceEEEcCCCCCeeeEEEecccccCCCCCcc-ccCCCCCHHHHHHHHHcCCceeeeecCCCCCccc
Q psy2890 303 NNIESNNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAA-IGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSD 381 (893)
Q Consensus 303 ~~~~~~~~~~~g~~~g~~~~~P~~~~~ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~ 381 (893)
+.|+.+.||++|+.+||+.+.+|+ +++|||+ .++||||++||+++++|||+.++|+++ +|
T Consensus 297 -------------lhGk~~~hP~~~r~lPiI~D~~Vd-~~fGTGaVKITPaHd~nDyEvgkRh~L~~~ni~~~-dG---- 357 (995)
T KOG0432|consen 297 -------------LHGKFVKHPFTGRKLPIICDIAVD-MEFGTGAVKITPAHDPNDYEVGKRHNLEFINIFTD-DG---- 357 (995)
T ss_pred -------------ccCceeecCCCCCccceeeccccc-ccccccceEecCCCChhHHHHHHhcCCCceeEEcC-CC----
Confidence 369999999999999999999999 9999999 999999999999999999999999986 55
Q ss_pred cccccccccCCcccccc-CCCCCCCCHHHHHHHHHHHHHHcCCCCee---------------------------------
Q psy2890 382 KIWKDWYIDKENCYCIN-SCKYNNMSHKEATNAISTDLIKLGLGNKK--------------------------------- 427 (893)
Q Consensus 382 ~~~~~~~~~~g~~~~~~-s~~~~gl~~~~a~~~i~~~L~~~~~~~~~--------------------------------- 427 (893)
. |++ +|+|+||.+.+||++|++.|++.|+...+
T Consensus 358 -----------~--l~~~~gef~Gm~RFeAR~kvv~~L~e~gL~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v~c~ema 424 (995)
T KOG0432|consen 358 -----------L--LNNVCGEFKGMKRFEAREKVVEKLKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFVSCKEMA 424 (995)
T ss_pred -----------c--eeccchhccCcHHHHHHHHHHHHHHHhhhhhccCCCceeccccCCCCCcccccccchheeehHHHH
Confidence 3 554 68999999999999999999999983210
Q ss_pred -----------e---------Ee-----eecceeeccccccCCccCeEEcCCCCeeecCCCCCCccCCCccCCCCccccc
Q psy2890 428 -----------N---------IF-----RLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKEN 482 (893)
Q Consensus 428 -----------~---------~~-----~l~DW~ISRQr~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~g~~l~~~ 482 (893)
+ +| +++|||||||.||||+||+|+...... ...++..-+ |...+..
T Consensus 425 ~~A~~av~sG~L~i~P~~~~k~w~~W~~~i~DWCiSRQLWWGHrIPAy~v~~~~~-~~ee~~Wvv--------arseeeA 495 (995)
T KOG0432|consen 425 KKALKAVESGKLEILPEFHEKEWYRWLENIRDWCISRQLWWGHRIPAYFVNLSDG-RAEEDYWVV--------ARSEEEA 495 (995)
T ss_pred HHHHHHHhcCCeEECchHHHHHHHHHHhhccccchhhhhhhccccceeeeecccC-CCccceeEE--------eCCHHHH
Confidence 0 01 679999999999999999998632110 000000000 1111100
Q ss_pred cccccccc-CCCCccceecCCccccccccc-chhhhhcCCCccccCCChhhhhccCCceeeecchhhHHHHHHHHHHHHH
Q psy2890 483 KKFLHVSC-PKCNKLAFRETDTMDTFVDSS-WYYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTK 560 (893)
Q Consensus 483 ~~~~~~~c-~~~g~~~~re~d~~D~WfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~~~ 560 (893)
.+-.-.++ |...-.++|++|||||||+|+ |+|..++||+. .+.+..+||.++.=+|.| |+++|.|
T Consensus 496 ~ekaa~k~g~~~~~~L~qDpDVLDTWFSS~L~PfS~lGWP~~------t~d~~~fyP~sllETG~D--ILfFWVa----- 562 (995)
T KOG0432|consen 496 REKAAEKFGPGKEFTLEQDPDVLDTWFSSGLWPFSTLGWPEE------TKDFKNFYPLSLLETGHD--ILFFWVA----- 562 (995)
T ss_pred HHHHHHHhCCcccceeecCccHHHhhhhcccccchhcCCccc------cccHHhcCCchhhhcCch--HHHHHHH-----
Confidence 00000122 211225799999999999998 99999999983 455888999999999977 6664444
Q ss_pred HHHHhcC-ccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceeccccccccC
Q psy2890 561 LMYNLGL-IKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKS 639 (893)
Q Consensus 561 ~l~~~g~-~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSKS 639 (893)
-|.++|+ +++..||++|+.||||. | ..| +|||||
T Consensus 563 RMvmLg~kLtG~lPF~~V~LH~mVR-------D-a~G-------------------------------------RKMSKS 597 (995)
T KOG0432|consen 563 RMVMLGLKLTGELPFKEVLLHGLVR-------D-AHG-------------------------------------RKMSKS 597 (995)
T ss_pred HHHHhhhhhcCCCCchheeechhhc-------c-ccc-------------------------------------cccchh
Confidence 4666776 78999999999999997 5 555 899999
Q ss_pred CCCccCccchhh------------------------------hh-------CchhHHHHHHhcCCCCCCcccChhhhhHH
Q psy2890 640 KNNGIDPQTQIN------------------------------TY-------GADSTRLFIIFSAPPEKNLEWSDIGIEGA 682 (893)
Q Consensus 640 kgN~i~p~~ii~------------------------------~y-------GaD~lRl~ll~~~~~~~d~~~~~~~i~~~ 682 (893)
+||||||.|+|+ .| |.|||||.|++....++|+++|...++++
T Consensus 598 LGNVIDPlDVI~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s~~~~~~dInLDv~rv~g~ 677 (995)
T KOG0432|consen 598 LGNVIDPLDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVEGY 677 (995)
T ss_pred hccccCHHHHhccccHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHccccCccccccHHHHhhH
Confidence 999999999998 34 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcccccccccccc-CCccccCCChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHHH
Q psy2890 683 YRFLNRVWNFSYILAPRIINIINLNIFH-NDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIF-NILE 760 (893)
Q Consensus 683 ~~~l~rl~n~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fv-n~l~ 760 (893)
++|+|||||+.+|+.+..+. ++.+.. ......+ ...|+||+++|+.+++.+.+.|+.|+|..|.++++.|+ .+|+
T Consensus 678 r~FcNKlWNa~rF~l~~lg~--~~~p~~~~~~~~~~-~~~d~WIlsrL~~av~~~~~~~~~~~f~~at~a~~~Fwl~~lC 754 (995)
T KOG0432|consen 678 RHFCNKLWNATRFALQRLGE--NFVPSPTEDLSGNE-SLVDEWILSRLAEAVEEVNESLEARNFHLATSALYAFWLYDLC 754 (995)
T ss_pred HHHHHHHHHHHHHHHHhccc--CCCCCcccccCCCc-chhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999873332 221110 0011112 12899999999999999999999999999999999998 7888
Q ss_pred Hhhcc---cccCCCC---CcccHHHHHHHHHHHHHHhcccccchHHHHHHHhhccCC--CCCeeeccCCCCChhhhh-hH
Q psy2890 761 RINSE---TKFDNNK---NTNNDILLYEGMSIFLRVLNPIAPHITHILWKELKYSIQ--QGDILNACWPKIDSLALE-EE 831 (893)
Q Consensus 761 ~~~k~---~~~~~~~---~~~~~~~l~~~l~~ll~LL~P~~P~isEEIwq~L~~~~~--~~sI~~~~wP~~d~~~~~-~~ 831 (893)
..+-+ ...++.. ...+..+|+.++...++||||||||+|||+||+|+.+.+ ..||..++||...+..-+ +.
T Consensus 755 DVYlE~~Kp~l~~~~~~~~~~a~~vL~~~ld~gLrll~PfMPFvtEel~qrlP~r~~~~~~si~va~yP~~~~~~~~~e~ 834 (995)
T KOG0432|consen 755 DVYLEATKPLLWGDSEALAYEARRVLYRCLDNGLRLLHPFMPFITEELWQRLPRRKGSKPASISVSPYPSSNELWRNEEL 834 (995)
T ss_pred HHHHHHhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHhcccCCCCCCCceEecCCCchhcccCCHHH
Confidence 75422 1223322 235688999999999999999999999999999986532 248999999943333322 22
Q ss_pred HHHHH---HHHHhhhhcceEEEecC
Q psy2890 832 KEEVK---LIIQINGKFRGHIFVKK 853 (893)
Q Consensus 832 ~~~~~---~vv~i~gk~R~~~~v~~ 853 (893)
+..++ .+++..+++|+++++++
T Consensus 835 E~~~~~v~~i~~~iRslra~y~l~~ 859 (995)
T KOG0432|consen 835 ESAFELVLAITRAIRSLRAEYNLSP 859 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444 44444557888888874
No 23
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=2.8e-114 Score=1065.28 Aligned_cols=692 Identities=21% Similarity=0.325 Sum_probs=529.2
Q ss_pred HHHHHHHHHHHhCCCcccCCCCCCCCCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHH
Q psy2890 9 EIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMP 88 (893)
Q Consensus 9 ~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~p 88 (893)
+||++||++|+++++|+++.+ + +++|+|++||||+||.|||||+++++++|+++||+||+|++|+|++||||||+|
T Consensus 2 ~iE~k~~~~W~~~~~fe~~~~-~---~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~p 77 (938)
T TIGR00395 2 AIEKKWQKRWEEAHIFEADPD-D---REKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTP 77 (938)
T ss_pred hHHHHHHHHHHhCCCcccCCC-C---CCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCc
Confidence 699999999999999998754 3 678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc---------------C---------CCHHHHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHHH
Q psy2890 89 AENAAILN---------------N---------TSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFL 144 (893)
Q Consensus 89 ie~~a~~~---------------g---------~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~ 144 (893)
|+..|++. + .+|.+|++++...++++|++||+++||+|.+.|+||.|.++++|+|.
T Consensus 78 i~~~aek~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~ 157 (938)
T TIGR00395 78 ILGLAELIKRRDELTIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMN 157 (938)
T ss_pred hHHHHHHhhhhhhhccccchhhccCCHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHH
Confidence 99988662 1 34688999999999999999999999999999999999999999999
Q ss_pred HHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHHH
Q psy2890 145 KMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQ 224 (893)
Q Consensus 145 ~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~ 224 (893)
+|+++|+||++.++|+|||.|+|+|||+|+.+|.. +
T Consensus 158 ~L~e~G~iy~g~~~v~wcp~~~t~lsd~e~~~~e~------~-------------------------------------- 193 (938)
T TIGR00395 158 KLKELGLIVKGEHPVRYCPKDGNPVEDHDLLSGEG------V-------------------------------------- 193 (938)
T ss_pred HHHHCCCEecCCeeEeecCCCCCCCchhHhccCCc------c--------------------------------------
Confidence 99999999999999999999999999998865410 0
Q ss_pred HhhcccccceeeeeccccCCCCCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhchHH--HHHHHHHHhhc
Q psy2890 225 VNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLL--LQKFILEYKKN 302 (893)
Q Consensus 225 ~~wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~~--~~~~~~~~~~~ 302 (893)
+..++++|+|++.+. +.+++|||||||||+|++||+|||+++|+...+....- ..+..+++..+
T Consensus 194 ----~~~~~~~ikf~~~~~----------~~~l~~aTtRPETl~g~tav~V~P~~~Y~~~~~~~e~~i~s~~~~~~~~~q 259 (938)
T TIGR00395 194 ----TIVEYILIKFELEDG----------AFYFVAATLRPETVYGVTNCWVNPTITYVIAEVGGEKWITSKEAFENLSYQ 259 (938)
T ss_pred ----ccceEEEEEEEcCCC----------ceEEEEeeCCcchhhcceeEEECCCCcEEEEEeCCcEEEEeHHHHHhhhhc
Confidence 012457899988621 35899999999999999999999999987544321100 01112222222
Q ss_pred Ccccccccccccc-ccceEEEcCCCCCeeeEEEecccccCCCCCcc-ccCCCCCHHHHHHHHHc--------------CC
Q psy2890 303 NNIESNNLLKKSI-LTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAA-IGVPAHNKHDFYFAKKH--------------SL 366 (893)
Q Consensus 303 ~~~~~~~~~~~g~-~~g~~~~~P~~~~~ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~~~~~~--------------~l 366 (893)
+.......++.|. |+|+++.||++++++||++++||+ +++|||+ |+|||||++||++++++ ++
T Consensus 260 ~~~~~~~~~~~g~~l~G~~~~~P~~~~~ipil~~~~V~-~~~GTGvV~~~Pah~p~Dy~~~~~l~~~~~~~gi~~~~~~~ 338 (938)
T TIGR00395 260 KLKYKPIEEVPGKQFIGKKVHNPVVGPEVPILPAEFVD-TTKGTGVVMSVPAHAPDDYIALEDLLHDPEYLGIKPVVIDI 338 (938)
T ss_pred ccceeEEEEEchHhccCCEEECCCCCCeeEEeecceee-cCCCcceEEeCCCCCHHHHHHHHHhhhcchhcCCcchhccc
Confidence 2111134456665 899999999999999999999999 9999999 99999999999998863 35
Q ss_pred ceeeeecC-CCCCccc-----------------cc--ccccccc---CCccccc-cCCCCCCCCHHHHHHHHHHHHHHcC
Q psy2890 367 LIKQVINV-KNKSYSD-----------------KI--WKDWYID---KENCYCI-NSCKYNNMSHKEATNAISTDLIKLG 422 (893)
Q Consensus 367 ~~~~vi~~-~~g~~~~-----------------~~--~~~~~~~---~g~~~~~-~s~~~~gl~~~~a~~~i~~~L~~~~ 422 (893)
+++++++. ..|+... ++ .+.+|.+ +|+ |. +.|+|+|+++.+||++|++.|++.|
T Consensus 339 ~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~f~~G~--m~~~~~~~~G~~v~ear~~i~~~L~~~g 416 (938)
T TIGR00395 339 EPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEEYHTGV--MIYNIPPYKGMKVSEAKEKVKADLIDAG 416 (938)
T ss_pred CCccceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHHhhhhccCce--eccCCcccCCcCHHHhHHHHHHHHHHCC
Confidence 66677653 1232210 00 0234554 687 65 3579999999999999999999999
Q ss_pred CCCeee--------------------------E-----e---------------------------eecceeeccccccC
Q psy2890 423 LGNKKN--------------------------I-----F---------------------------RLRDWAISRQRYWG 444 (893)
Q Consensus 423 ~~~~~~--------------------------~-----~---------------------------~l~DW~ISRQr~WG 444 (893)
.+.+.. . | +++||||||||+||
T Consensus 417 ~~~~~~~~~~~~v~~R~g~~~vv~~~~~QWFi~~~~~~~k~~~~~~l~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG 496 (938)
T TIGR00395 417 LADVMYEFSESPVICRCGTDCIVKVVEDQWFVKYSDESWKELAHECLEGMRIIPEEVKNAFEGKIDWLKDWACCRRYGLG 496 (938)
T ss_pred CceEeeecCCCCcEecCCCeEEEeccCCCCeEEcCcHHHHHHHHHHHhcCEEeCHHHHHHHHHHHhhhhhcccccccccC
Confidence 863210 0 1 38899999999999
Q ss_pred CccCeEEcCCCCeeecCCCCCCccCCCccCCCCcccccccccccccCCCCccceecCCcccccccccchhhhhcCCCccc
Q psy2890 445 TPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKENKKFLHVSCPKCNKLAFRETDTMDTFVDSSWYYMRYISPKLEN 524 (893)
Q Consensus 445 ~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~g~~l~~~~~~~~~~c~~~g~~~~re~d~~D~WfdSsw~~~~~~~p~~~~ 524 (893)
||||+ . .+.+..+..+..+.. .+... ..+ ..++.|+. -....+++|+||+++=.....+.|...-
T Consensus 497 tpIP~-d---~~~~ieslsdstiY~----~~~~i----~~~--l~~~~~~~-~~l~~ev~D~~~~~~~~~~~t~~~~~~~ 561 (938)
T TIGR00395 497 TRLPW-D---EKWLIESLSDSTIYM----AYYTI----AHY--LNKDYYGN-EQMTDEFFDYIFLGKGDVKNTNIPLPAI 561 (938)
T ss_pred cccce-e---ecEEeeecchhhhhh----hhccH----HHH--hhccCCCh-HHCCcccCceEEECCCChhhcCCCHHHH
Confidence 99995 2 112211111111100 00000 000 11111221 1224678888887641111112221100
Q ss_pred cCCChhhhhccCCceeeecchhhHHHHHHHHHHHHHHHHHhcCccCCCcc-ceeeecceEeceeeeecccCCCCccccCC
Q psy2890 525 FMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPF-IRLLTQGMILNKTYYRIENSSNKKRWYNP 603 (893)
Q Consensus 525 ~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pf-k~l~~~G~v~~~~~~~~d~~~G~~~~~~~ 603 (893)
. -.+++|++|||+|+|++|+||+.+|++|..|.+.++. +..|| +.+++||||+ .+|
T Consensus 562 ~-~~~~ef~~~yP~D~~~~GkDii~~H~~~~i~~~~a~~------~~~~~Pk~i~~~G~vl---------~~G------- 618 (938)
T TIGR00395 562 Q-KLRREFEYWYPLDWRISGKDLIPNHLTFYIFHHVAIF------PEKFWPRGIVVNGYVM---------LEG------- 618 (938)
T ss_pred H-HHHHHHhhcCCceEEEEeeccccchHHHHHHHHHHcC------CccccCcEEEEeceEE---------eCC-------
Confidence 0 0135689999999999999999999987766654332 23344 9999999998 445
Q ss_pred CcccccccCCCCccceeeecCCCcceeccccccccCCCCccCccchhhhhCchhHHHHHHhcCCCCCCcccChhhhhHHH
Q psy2890 604 DDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAY 683 (893)
Q Consensus 604 ~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~~ 683 (893)
+|||||+||+|+|.++|++||||++||||++++++++|++|+++.+.++.
T Consensus 619 ------------------------------~KMSKSlGNvI~p~d~i~~yGaDalRl~Ll~~~~~~~D~~fs~~~~~~~~ 668 (938)
T TIGR00395 619 ------------------------------KKMSKSKGNVLTLEQAVEKFGADVARLYIADAAETVQDADWKESEVEGTI 668 (938)
T ss_pred ------------------------------ccccCcCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccccccccccccCCccccCCChhHHHHHHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHh
Q psy2890 684 RFLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVV-SGCMKIFNILERI 762 (893)
Q Consensus 684 ~~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai-~~l~~fvn~l~~~ 762 (893)
++++++||++.++.. ... .. .....+..|+|++++++.++++++++|++|+|+.|+ +.+++|++.++.|
T Consensus 669 ~~l~~l~n~~~~~~~-~~~-~~--------~~~~~~~~D~wlls~l~~~i~~v~~a~e~~~~~~Al~~~l~~~~~~~n~Y 738 (938)
T TIGR00395 669 LRLERLYEFAEEITK-ESN-LE--------TGEETSFIDRWLESRMNAAIKETYEAMENFQTRKAVKYALFDLQADVDWY 738 (938)
T ss_pred HHHHHHHHHHHHHHh-hcc-cC--------CCccCChHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999988654 110 00 111346789999999999999999999999999999 7899999988776
Q ss_pred hcccccCCCCCcccHHHHHHHHHHHHHHhcccccchHHHHHHHhhccCCCCCeeeccCCCCChhhhh-hHHHHHHHHHHh
Q psy2890 763 NSETKFDNNKNTNNDILLYEGMSIFLRVLNPIAPHITHILWKELKYSIQQGDILNACWPKIDSLALE-EEKEEVKLIIQI 841 (893)
Q Consensus 763 ~k~~~~~~~~~~~~~~~l~~~l~~ll~LL~P~~P~isEEIwq~L~~~~~~~sI~~~~wP~~d~~~~~-~~~~~~~~vv~i 841 (893)
... . ......++.++++.+++||+|||||+|||||+.|+. ++||+.++||++++..++ ..+..++.+.++
T Consensus 739 l~~---~---~~~~~~~l~~~l~~~~~LLaP~~P~~aEeiw~~Lg~---~~sv~~~~wP~~~~~~~d~~~~~~~~~~~~~ 809 (938)
T TIGR00395 739 RRR---G---GVNHKDVLARYLETWIKLLAPFAPHFAEEMWEEVGN---EGFVSLAKFPEASEPAVDKEVEAAEEYLRNL 809 (938)
T ss_pred HHh---C---cchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHcCC---CCeEEecCCCCCCcccCCHHHHHHHHHHHHH
Confidence 532 0 112345899999999999999999999999999986 679999999998876544 235566777777
Q ss_pred hhhcceEEEec
Q psy2890 842 NGKFRGHIFVK 852 (893)
Q Consensus 842 ~gk~R~~~~v~ 852 (893)
...+|...+++
T Consensus 810 i~~iR~~~~~~ 820 (938)
T TIGR00395 810 VRDIQEIAKID 820 (938)
T ss_pred HHHHHHhhccC
Confidence 77777665554
No 24
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=1e-112 Score=1057.35 Aligned_cols=687 Identities=21% Similarity=0.297 Sum_probs=502.5
Q ss_pred CCCCCchHHHHHHHHHHHhCCCcccCCCCC-CCCCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCcccccc
Q psy2890 2 QKKYNFVEIEKITQCYWNKINAYQTTENDT-RFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPM 80 (893)
Q Consensus 2 ~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~-~~~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~ 80 (893)
.+++++.++|++||++|+++++|+++.+.+ +.++++|++++||||+||.|||||++|++++|+++||+||+||+|+|++
T Consensus 10 ~~r~~l~~iE~k~q~~W~~~~~fe~~~~~~~~~~~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp~ 89 (1084)
T PLN02959 10 ARRDRLLEIEVAVQKWWEEEKVFEAEAGDEPPKPGEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLPF 89 (1084)
T ss_pred chhcCHHHHHHHHHHHHHhcCCcccCcccccCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccCCCC
Confidence 467999999999999999999999876432 1125889999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHc-------CCC----------------------------------HHH-----------------
Q psy2890 81 GWDAFGMPAENAAILN-------NTS----------------------------------PAK----------------- 102 (893)
Q Consensus 81 G~D~~G~pie~~a~~~-------g~~----------------------------------~~~----------------- 102 (893)
||||||+||+..|++. |.. +++
T Consensus 90 G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~~~~~ 169 (1084)
T PLN02959 90 AFHCTGMPIKASADKLAREIQQYGNPPVFPEEDEDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEIMRS 169 (1084)
T ss_pred CcCCCCccHHHHHHHHHHHHHHcCCCcccccccccccccccccccccccccccHHHHHHHHHHHHHHhCCchHHHHHHhh
Confidence 9999999999998542 321 111
Q ss_pred ----------------HHHHHHHHHHHHHHHcCCcccccCccccCC--hhhHHHHHHHHHHHHhcCcceeeceeeeecCC
Q psy2890 103 ----------------WTYDNVSYMKKQLSSLGLAIDWSREIITCS--PKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPI 164 (893)
Q Consensus 103 ----------------~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~--~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~ 164 (893)
|++.....++++|++||+++||+|.|.|+| |.|.++++|+|.+|+++|+||++.++|+|||.
T Consensus 170 ~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~wcp~ 249 (1084)
T PLN02959 170 FGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFGLGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTIYSPL 249 (1084)
T ss_pred cCCchhhhhhccCHHHHHHhccHHHHHHHHHhCceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeeeeeCCC
Confidence 222233667899999999999999999999 99999999999999999999999999999999
Q ss_pred CCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHHHHhhcccccceeeeeccccCC
Q psy2890 165 EKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIGKSKGIFLAFPHNIKD 244 (893)
Q Consensus 165 ~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~wi~~s~~~~i~f~~~~~~ 244 (893)
|+|+|+|+|+..|.. ..++-| +.|+|++.+.-
T Consensus 250 ~~t~ladhe~~~~e~----------~~~~~y--------------------------------------~~ikf~v~~~~ 281 (1084)
T PLN02959 250 DGQPCADHDRASGEG----------VGPQEY--------------------------------------VLIKMEVLPPF 281 (1084)
T ss_pred CCCCchhhHHhcCCC----------CCccee--------------------------------------EEEEEeecCcc
Confidence 999999999875421 011111 22344432110
Q ss_pred CCCCccc-cCCcEEEEEeccccccccccEEEECCCChHHHHHhhch-------HHHH--HHHHHHhhcCccccccccccc
Q psy2890 245 PNKNNKL-IQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNN-------LLLQ--KFILEYKKNNNIESNNLLKKS 314 (893)
Q Consensus 245 ~~~~~~~-~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~-------~~~~--~~~~~~~~~~~~~~~~~~~~g 314 (893)
......+ ..+.+++|||||||||||++||+|||+..|+...+.++ .... .|.......+.. ....++.|
T Consensus 282 ~~~~~~~~~~~~~l~~aTtrPeTl~g~ta~~VnP~~~Y~~~~~~~~e~~i~s~~~~~~~~~q~~~~~~~~~-~~l~~~~G 360 (1084)
T PLN02959 282 PGKLKALEGKKVFLAAATLRPETMYGQTNCWVLPDGKYGAYEINDTEVFILTARAALNLAYQNFSKVPGKP-TCLVELTG 360 (1084)
T ss_pred hhhhhhcCCCCeEEEEEeCccchhhhheeEEECCCCeEEEEEecCCeEEEEehhhhhhhHHhhhcccCCCc-EEEEEEEH
Confidence 0000000 01468999999999999999999999999876544211 1111 111111111111 13456778
Q ss_pred c-ccceEEEcCCCCCe-eeEEEecccccCCCCCcc-ccCCCCCHHHHHH----------HHHcCC--------ceeeeec
Q psy2890 315 I-LTQLKVLHPLTNQE-IKVFVVNYVIEKSYGRAA-IGVPAHNKHDFYF----------AKKHSL--------LIKQVIN 373 (893)
Q Consensus 315 ~-~~g~~~~~P~~~~~-ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~~----------~~~~~l--------~~~~vi~ 373 (893)
. |.|+.+.||+++++ +||+++.||+ ++.|||+ |+||||+++||.. +++||| +++++|+
T Consensus 361 ~~L~G~~~~~Pl~~~~~i~ilp~~~V~-~~~GTGvV~~vPah~pdDy~~~~dl~~k~~~~~kygi~~~~~~~~~~i~iid 439 (1084)
T PLN02959 361 YDLIGLPLKSPLAFNEVIYALPMLTIL-TDKGTGVVTSVPSDSPDDYMALSDLKAKPALRAKYGVKDEWVLPFEVVPIIN 439 (1084)
T ss_pred HHhCCCEEECCCCCCcceeEeceEEEe-CCCCeeeEEeCCCCCHHHHHHHHhhccchhHHHHcCCCcccccccCCcCccc
Confidence 7 89999999999988 9999999999 9999999 9999999999997 688898 4577777
Q ss_pred CCCCC--ccc--------cc-----------ccccccc---CCccccccCCCCCCCCHHHHHHHHHHHHHHcCCCCe---
Q psy2890 374 VKNKS--YSD--------KI-----------WKDWYID---KENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNK--- 426 (893)
Q Consensus 374 ~~~g~--~~~--------~~-----------~~~~~~~---~g~~~~~~s~~~~gl~~~~a~~~i~~~L~~~~~~~~--- 426 (893)
. +|. ... +. .+..|.+ +|+ |. .|+|.|+.+.+||++|++.|++.|.+..
T Consensus 440 ~-~g~G~~~a~~~~~~~~i~s~~d~~~l~~a~~~~Y~~~f~~g~--m~-~g~~~G~~v~eAr~~Ii~~L~~~G~l~~~~e 515 (1084)
T PLN02959 440 I-PEFGDKSAEKVCEDLKIKSQNDKEKLAEAKRLTYLKGFTDGT--ML-VGEYAGRKVQEAKPLIKKKLIEAGQAILYSE 515 (1084)
T ss_pred c-CCCCcchhHHHHHhhcccccchhhHHHHHhhhhhhhcccccc--cc-CcCcCCcCHHHHHHHHHHHHHhCCCceeeeE
Confidence 5 442 110 00 0223432 466 64 6899999999999999999999996321
Q ss_pred ---------------------------------------eeEe--------------eecceeeccccccCCccCeEEcC
Q psy2890 427 ---------------------------------------KNIF--------------RLRDWAISRQRYWGTPIPIIYCD 453 (893)
Q Consensus 427 ---------------------------------------~~~~--------------~l~DW~ISRQr~WG~pIPi~~~~ 453 (893)
.+++ +++||||||||+|||||| |+|.
T Consensus 516 p~~pv~~R~g~~~~v~l~~QWFi~~~~~~~k~~a~~~l~~v~~~P~~~~~~~~~wl~~l~DWciSRQr~wGtpIP-Wd~~ 594 (1084)
T PLN02959 516 PEKKVMSRSGDECVVALTDQWYLTYGEEEWKKKAEKCLSKMNLYSDETRHGFEHTLGWLNQWACSRSFGLGTRIP-WDEQ 594 (1084)
T ss_pred cCCCeEECCCCEEEEeecCCeeEECCchHHHHHHHHHHcccEEECHHHHHHHHHHHhCCCceeecccccCCCcCC-cccc
Confidence 0111 688999999999999999 6431
Q ss_pred CCCeeecCCCCCCccCCCccCCCCcccccccccccccCCCCc-----c-ceecCCccccccccc-chhhhhcCCCccccC
Q psy2890 454 SCGSVPVPEKDLPVILPETCVPNNLLKENKKFLHVSCPKCNK-----L-AFRETDTMDTFVDSS-WYYMRYISPKLENFM 526 (893)
Q Consensus 454 ~~~~v~v~~~~lpv~lp~~~~~g~~l~~~~~~~~~~c~~~g~-----~-~~re~d~~D~WfdSs-w~~~~~~~p~~~~~~ 526 (893)
.+..+..+-.+.+. +.. ..++.. ....||. . -..+.||||+||+|+ |++.. ++|...-..
T Consensus 595 ---~~ieslsdstiy~a----~yt----i~~~~~-~~~~~g~~~~~i~~~~~~~dV~D~wF~Sg~~p~~t-~~p~~~l~~ 661 (1084)
T PLN02959 595 ---FLIESLSDSTIYMA----YYT----VAHLLQ-GGDMYGKDKSSIKPEQMTDEVWDFVFCGGPLPKSS-DIPAELLEK 661 (1084)
T ss_pred ---eeeccCCCCceeec----hhh----HHHHHh-hhhccCCccccCChhhcCccceeEeecCCCccccc-CCCHHHHhh
Confidence 11111101000000 000 000000 0000111 1 122689999999996 88876 666532111
Q ss_pred CChhhhhccCCceeeecchhhHHHHHHHHHHHHHHHHHhcCccCCCcc-ceeeecceEeceeeeecccCCCCccccCCCc
Q psy2890 527 IDDNKINYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPF-IRLLTQGMILNKTYYRIENSSNKKRWYNPDD 605 (893)
Q Consensus 527 ~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pf-k~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~ 605 (893)
.++++++|||+|++++|.||+++|+.|++|.|..+ .+..|| +.+++||||+ .+|
T Consensus 662 -~r~ef~~~yP~Dl~~sG~Dii~~wl~~~l~~~~al------~~~~P~p~~v~v~G~V~---------~~G--------- 716 (1084)
T PLN02959 662 -MKQEFEYWYPFDLRVSGKDLIQNHLTFAIYNHTAI------WAEEHWPRGFRCNGHLM---------LNS--------- 716 (1084)
T ss_pred -hhHHHHhhCCCeEEEecccHHHHHHHHHHHHHHHh------cCCCCCCceEEEccEEe---------cCC---------
Confidence 14568999999999999999999999888777654 346899 6799999998 556
Q ss_pred ccccccCCCCccceeeecCCCcceeccccccccCCCCccCccchhhhhCchhHHHHHHhcCCCCCCcccChhhhhHHHHH
Q psy2890 606 VKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRF 685 (893)
Q Consensus 606 v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~~~~ 685 (893)
+|||||+||+|+|.++|++||||++|||++++++..+|++|+++.+..+.+.
T Consensus 717 ----------------------------~KMSKSkGNvI~p~diI~kyGADalRl~la~~~~~~~D~nF~~k~~n~~~~~ 768 (1084)
T PLN02959 717 ----------------------------EKMSKSTGNFLTLRQAIEEFSADATRFALADAGDGVDDANFVFETANAAILR 768 (1084)
T ss_pred ----------------------------cCccccCCCcCCHHHHHHHhCchHHHHHHhhcCCccCCCCccHHHHHHHHHH
Confidence 8999999999999999999999999999999888899999999887765544
Q ss_pred HHHHHHHHHhhhhccccccccccccCCccccCCChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHhhc
Q psy2890 686 LNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSG-CMKIFNILERINS 764 (893)
Q Consensus 686 l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~-l~~fvn~l~~~~k 764 (893)
++.+.+++..... ....+. ....++..|+|++++++.++++++++|++|+|+.|++. +|+|.+....|+
T Consensus 769 l~n~~~~~~~~~~---~~~~~~------~~~~~~~~D~wils~l~~~i~~v~~a~e~y~f~~A~~~~~Yel~~~k~~yr- 838 (1084)
T PLN02959 769 LTKEIAWMEEVLA---AESSLR------TGPPSTYADRVFENEINIAIAETEKNYEAMMFREALKSGFYDLQAARDEYR- 838 (1084)
T ss_pred HHHHHHHHHHhhh---hhcccC------CcccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhHHHHh-
Confidence 4444333222211 001110 11234678999999999999999999999999999986 454555444442
Q ss_pred ccccCCCCCcccHHHHHHHHHHHHHHhcccccchHHHHHHHhhccCCCCCeeeccCCCCC
Q psy2890 765 ETKFDNNKNTNNDILLYEGMSIFLRVLNPIAPHITHILWKELKYSIQQGDILNACWPKID 824 (893)
Q Consensus 765 ~~~~~~~~~~~~~~~l~~~l~~ll~LL~P~~P~isEEIwq~L~~~~~~~sI~~~~wP~~d 824 (893)
.+++. ...++.+|+.+|+.+++||||||||+|||||+.|.+. ++||+.++||.++
T Consensus 839 --~~~~~-~~~~~~~L~~vl~~~l~LLaP~~PfiaEEiW~~l~~~--~~sI~~~~wP~~~ 893 (1084)
T PLN02959 839 --LSCGS-GGMNRDLVWRFMDVQTRLITPICPHYAEHVWREILKK--EGFAVTAGWPVAG 893 (1084)
T ss_pred --hcccc-chHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCC--CCeEEecCCCCCC
Confidence 22221 1246789999999999999999999999999999421 5799999999876
No 25
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.5e-108 Score=1007.14 Aligned_cols=638 Identities=24% Similarity=0.364 Sum_probs=490.9
Q ss_pred CcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHc---------------CC---------CHHHHHHH
Q psy2890 51 LHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILN---------------NT---------SPAKWTYD 106 (893)
Q Consensus 51 lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~---------------g~---------~~~~~~~~ 106 (893)
|||||+++++++|+++||+||+||+|++++||||||+|||..|++. |+ +|++|+++
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~~ 80 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVEY 80 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHHH
Confidence 7999999999999999999999999999999999999999987532 33 46889999
Q ss_pred HHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCccc
Q psy2890 107 NVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAII 186 (893)
Q Consensus 107 ~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v 186 (893)
+.+.+++++++||+++||+|.|.|+||.|.++++|+|.+|+++|+||++.++|+|||.|+|+|||+|+..|.. +
T Consensus 81 ~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~~e~------~ 154 (897)
T PRK12300 81 FSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEE------P 154 (897)
T ss_pred hHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhcCCC------C
Confidence 9999999999999999999999999999999999999999999999999999999999999999998865411 0
Q ss_pred EEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHHHHhhcccccceeeeeccccCCCCCCccccCCcEEEEEeccccc
Q psy2890 187 EKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDI 266 (893)
Q Consensus 187 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~t 266 (893)
+.+.+++|+|+ . +. +.+++||||||||
T Consensus 155 ------------------------------------------~~~~~~~ikf~-~-~~---------~~~l~~~TtrPeT 181 (897)
T PRK12300 155 ------------------------------------------EIVEYTLIKFE-E-SE---------DLILPAATLRPET 181 (897)
T ss_pred ------------------------------------------CcceEEEEEEe-C-CC---------ceEEEEEECCcch
Confidence 01344688997 2 21 5689999999999
Q ss_pred cccccEEEECCCChHHHHHhhchH--HHHHHHHHHhhcCcccccccccccc-ccceEEEcCCCCCeeeEEEecccccCCC
Q psy2890 267 IYGITFCVISPEHPLAIFAARNNL--LLQKFILEYKKNNNIESNNLLKKSI-LTQLKVLHPLTNQEIKVFVVNYVIEKSY 343 (893)
Q Consensus 267 l~g~~~v~v~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~~~~P~~~~~ipv~~~~~V~~~~~ 343 (893)
|+|++||||||+++|+........ -..+..+.+..+........+++|. +.|+++.||++++.+||++++||+ +++
T Consensus 182 l~g~tai~V~P~~~Y~~~~~~~e~~i~a~~~~~~~~~~~~~~~~~~~~~G~~l~G~~~~~Pl~~~~ipil~~~~V~-~~~ 260 (897)
T PRK12300 182 IFGVTNLWVNPDATYVKAEVDGEKWIVSKEAAEKLSFQDRDVEIIEEIKGSELIGKKVKNPVTGKEVPILPADFVD-PDN 260 (897)
T ss_pred hccceEEEECCCCcEEEEEECCEEEEEeHHHHHHHhcCcCCceEEEEeehHHhcCCEEECCCCCCeEEEeccCeee-cCC
Confidence 999999999999998764321100 0011112222221111134567888 899999999999999999999999 999
Q ss_pred CCcc-ccCCCCCHHHHHHHHHcC--------CceeeeecC-CCCCcc--------------c--cc--cccccc---cCC
Q psy2890 344 GRAA-IGVPAHNKHDFYFAKKHS--------LLIKQVINV-KNKSYS--------------D--KI--WKDWYI---DKE 392 (893)
Q Consensus 344 GTG~-~~~Pah~~~D~~~~~~~~--------l~~~~vi~~-~~g~~~--------------~--~~--~~~~~~---~~g 392 (893)
|||+ |+|||||++||+++++++ |+++++++. ..|... + |+ .+.+|. .+|
T Consensus 261 GTGvV~~~Pah~~~Dy~~~~~~~~~~~~~~~l~~i~ii~v~~~g~~~a~~~~~~~~~~~~~d~~l~~a~~~~y~~~f~~G 340 (897)
T PRK12300 261 GTGVVMSVPAHAPYDYVALRDLKKNKELLDVIEPIPLIEVEGYGEFPAKEVVEKLGIKSQEDPELEEATKEVYRAEFHKG 340 (897)
T ss_pred CeeeEEeCCCCCHHHHHHHHHhccccccccccCCcceEecCCcCcccHHHHHHHhCCCCccchhHHHHHHHhhhccccce
Confidence 9999 999999999999999998 777667653 012110 0 10 023455 378
Q ss_pred cccccc-CCCCCCCCHHHHHHHHHHHHHHcCCCCeee--------------------------Ee---------------
Q psy2890 393 NCYCIN-SCKYNNMSHKEATNAISTDLIKLGLGNKKN--------------------------IF--------------- 430 (893)
Q Consensus 393 ~~~~~~-s~~~~gl~~~~a~~~i~~~L~~~~~~~~~~--------------------------~~--------------- 430 (893)
+ |.+ .|+|+|+.+.+|+++|++.|++.|.+.+.. +|
T Consensus 341 ~--~~~~~g~~~G~~v~eA~~~I~~~L~~~g~~~~~~~~~~~~~~~R~~~~~i~~~~~~QWFi~~~~~~~k~~~~~~~~~ 418 (897)
T PRK12300 341 V--LKENTGEYAGKPVREAREKITKDLIEKGIADIMYEFSNRPVYCRCGTECVVKVVKDQWFIDYSDPEWKELAHKALDN 418 (897)
T ss_pred E--EeecccCcCCeEHHHHHHHHHHHHHHCCCeEEEEecCCCCcCcCCCCEEEEEecCCceEEEcCcHHHHHHHHHHHcc
Confidence 8 875 489999999999999999999999853210 11
Q ss_pred -----------------eecceeeccccccCCccCe---EEcCCCCeeec--CCCCCCccCCCccCCCC-cccccccccc
Q psy2890 431 -----------------RLRDWAISRQRYWGTPIPI---IYCDSCGSVPV--PEKDLPVILPETCVPNN-LLKENKKFLH 487 (893)
Q Consensus 431 -----------------~l~DW~ISRQr~WG~pIPi---~~~~~~~~v~v--~~~~lpv~lp~~~~~g~-~l~~~~~~~~ 487 (893)
+++||||||||+||||||+ |.|+.+..-.+ .-..+...|.+ .|- +-+.++++.+
T Consensus 419 ~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WGtpiP~~~~w~~esl~ds~iY~~~~~i~~~l~~---~g~~~~~l~~~~~D 495 (897)
T PRK12300 419 MEIIPEEYRKEFENTIDWLKDRACARRRGLGTRLPWDEEWIIESLSDSTIYMAYYTIAHKIRE---YGIKPEQLTPEFFD 495 (897)
T ss_pred CEEECHHHHHHHHHHHhhhhhcceeeccccCCcCCccCCEEeeeccccchhhhHHHHHHHHHH---cCCChHHCChhhCc
Confidence 3789999999999999996 55544321100 00000000000 010 0000111111
Q ss_pred cccCCCCccceecCCcccccccccchhhhhcCCCccccCCChhhhhccCCceeeecchhhHHHHHHHHHHHHHHHHHhcC
Q psy2890 488 VSCPKCNKLAFRETDTMDTFVDSSWYYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGL 567 (893)
Q Consensus 488 ~~c~~~g~~~~re~d~~D~WfdSsw~~~~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~ 567 (893)
.. +....+++|+|++|+|++..... .+++|++|+|+|+|++|+||+.+|++|.+|.|.++..
T Consensus 496 ~~-------~~~~~~~~~~~~~sg~p~~~~~~--------~~~~f~~~~P~D~~~~GkDii~~Hl~~~~~~~~a~~~--- 557 (897)
T PRK12300 496 YV-------FLGKGDPEEVSKKTGIPKEILEE--------MREEFLYWYPVDWRHSGKDLIPNHLTFFIFNHVAIFP--- 557 (897)
T ss_pred eE-------EeCCCccccCchhcCCCHHHHHH--------HHHHHhccCCceEEEeeeccCccHHHHHHHHHHHhcC---
Confidence 11 11123577888888877654321 1456899999999999999999999998877766543
Q ss_pred ccCCCcc-ceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceeccccccccCCCCccCc
Q psy2890 568 IKFNEPF-IRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDP 646 (893)
Q Consensus 568 ~~~~~Pf-k~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p 646 (893)
..|+ +++++||||+ .+| +|||||+||+|+|
T Consensus 558 ---~~~~Pk~v~~hG~vl---------~~G-------------------------------------~KMSKS~GNvVdp 588 (897)
T PRK12300 558 ---EEKWPRGIVVNGFVL---------LEG-------------------------------------KKMSKSKGNVIPL 588 (897)
T ss_pred ---CCccCcEEEEcceEE---------ECC-------------------------------------ccccCcCCCCCCH
Confidence 3466 8999999998 345 8999999999999
Q ss_pred cchhhhhCchhHHHHHHhcCCCCCCcccChhhhhHHHHHHHHHHHHHHhhhhccccccccccccCCccccCCChhHHHHH
Q psy2890 647 QTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFR 726 (893)
Q Consensus 647 ~~ii~~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~~~~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il 726 (893)
.++|++||||++||||++++++++|++|+++.+.++.++++|+|+++++... .. .....+..|+|++
T Consensus 589 ~eii~~yGaDalRl~L~~~~~~~~D~~fs~~~v~~~~~~l~r~~~~~~~~~~-~~------------~~~~~~~~D~wil 655 (897)
T PRK12300 589 RKAIEEYGADVVRLYLTSSAELLQDADWREKEVESVRRQLERFYELAKELIE-IG------------GEEELRFIDKWLL 655 (897)
T ss_pred HHHHHHcChHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhc-CC------------CccccCHhHHHHH
Confidence 9999999999999999999999999999999999999999999999988654 10 1113467899999
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHhhcccccCCCCCcccHHHHHHHHHHHHHHhcccccchHHHHHHH
Q psy2890 727 RKIHKILQQINRDIKRIQYNTVVSGCM-KIFNILERINSETKFDNNKNTNNDILLYEGMSIFLRVLNPIAPHITHILWKE 805 (893)
Q Consensus 727 ~~l~~~i~~v~~~~e~~~f~~ai~~l~-~fvn~l~~~~k~~~~~~~~~~~~~~~l~~~l~~ll~LL~P~~P~isEEIwq~ 805 (893)
++++.++++++++|++|+|++|++.++ .+.+.++.|.... ...++.+++++++.+++||+|||||+|||||+.
T Consensus 656 s~l~~~i~~v~~~~e~~~~~~A~~~i~~~l~~~~n~Yi~~~------k~~~~~~l~~~l~~~~~lLaPf~P~~aEeiw~~ 729 (897)
T PRK12300 656 SRLNRIIKETTEAMESFQTRDAVQEAFYELLNDLRWYLRRV------GEANNKVLREVLEIWIRLLAPFTPHLAEELWHK 729 (897)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc------chHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999999999999999999998876 5557887776431 114678999999999999999999999999999
Q ss_pred hhccCCCCCeeeccCCCCChhhhh-hHHHHHHHHHHhh
Q psy2890 806 LKYSIQQGDILNACWPKIDSLALE-EEKEEVKLIIQIN 842 (893)
Q Consensus 806 L~~~~~~~sI~~~~wP~~d~~~~~-~~~~~~~~vv~i~ 842 (893)
|+. ++||+.+.||++++...+ ..+..++.+.++.
T Consensus 730 L~~---~~sv~~~~wP~~~~~~~d~~~~~~~~~~~~~i 764 (897)
T PRK12300 730 LGG---EGFVSLEKWPEPDESKIDEEAELAEEYVKRLI 764 (897)
T ss_pred cCC---CCeEEeCCCCCCCcccCCHHHHHHHHHHHHHH
Confidence 986 679999999998876544 2234455444443
No 26
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=100.00 E-value=6.3e-110 Score=987.97 Aligned_cols=519 Identities=35% Similarity=0.603 Sum_probs=401.6
Q ss_pred HHHHHHHhCCCcccC--CCCCCCCCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHH
Q psy2890 13 ITQCYWNKINAYQTT--ENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAE 90 (893)
Q Consensus 13 ~~~~~W~~~~~f~~~--~~~~~~~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie 90 (893)
|||++|+++++|+.. ..++ +++|++++||||+||.|||||++|++++|+++||+||+||+|++++||||||+|||
T Consensus 1 k~~~~W~~~~~~~~~~~~~~~---~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie 77 (601)
T PF00133_consen 1 KWQKFWEENKLFEKQLEKNKN---KPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIE 77 (601)
T ss_dssp HHHHHHHHTTCCHHHHHCTTT---SGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHH
T ss_pred CHhHHHhhCCCcccccccCCC---CCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchh
Confidence 799999999999987 3333 78999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHc-CC----------------CHHHHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcce
Q psy2890 91 NAAILN-NT----------------SPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIY 153 (893)
Q Consensus 91 ~~a~~~-g~----------------~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy 153 (893)
.++++. |. .|++|++++++.++++|++||+++||++.|.|+||.|.++++++|.+|+++||||
T Consensus 78 ~~vek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIy 157 (601)
T PF00133_consen 78 AKVEKKLGIKEKKDRKDLGREEFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIY 157 (601)
T ss_dssp HHHHHHTTTTSHHHCSCSTHHHHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEE
T ss_pred hhHHHhhcccccccccccccccchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEE
Confidence 998764 33 2678999999999999999999999999999999999999999999999999999
Q ss_pred eeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHHHHhhcccccc
Q psy2890 154 KKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIGKSKG 233 (893)
Q Consensus 154 ~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~wi~~s~~ 233 (893)
++.++|+|||.|+|+||++|+ ++++. .+.+
T Consensus 158 r~~~pv~w~p~~~t~lsd~Ev------------~~~~~--------------------------------------~~~~ 187 (601)
T PF00133_consen 158 RGKKPVNWCPSCQTALSDHEV------------EYKEV--------------------------------------KSPS 187 (601)
T ss_dssp EEEEEEEEETTTTEEE-GGGE------------EEEEE--------------------------------------EEEE
T ss_pred eeCCCCCcCcccccchhhhhc------------ccccc--------------------------------------cCce
Confidence 999999999999999999775 45443 2456
Q ss_pred eeeeeccccCCCCCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhchH--HHHHHHHHHhhcCcccccccc
Q psy2890 234 IFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNL--LLQKFILEYKKNNNIESNNLL 311 (893)
Q Consensus 234 ~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 311 (893)
++|+|++.++. +.+|+|||||||||+||+||+|||+..|+ ..... ...++++.+..+... ...+
T Consensus 188 ~~v~f~~~~~~---------~~~l~i~TtrPeTl~~~~ai~vnP~~~Y~---~~~~~~i~~~~~~~~~~~~~~~--~~~~ 253 (601)
T PF00133_consen 188 IYVKFPLKDGE---------EVYLVIWTTRPETLPGNTAIAVNPDFDYV---INGERYIVAKDLVEKLSKQEKT--KLED 253 (601)
T ss_dssp EEEEEEESSSS---------EEEEEEEES-GGGGGG-BEEEE-TTSEEE---ETTEEEEEEHHHHHHHHTTTSS--SEEE
T ss_pred EEEEEEecCcc---------ceEEEEEechhhHHhCCeeEEECCCccce---eCCeeehHHHHHHHHHHhhhhh--cccc
Confidence 89999998442 35999999999999999999999999987 21100 012333333333221 1345
Q ss_pred cccc-ccceEEEcCCCCCeeeEEEecccccCCCCCcc-ccCCCCCHHHHHHHHHcCCceeeeecCCCCCccccccccccc
Q psy2890 312 KKSI-LTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAA-IGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYI 389 (893)
Q Consensus 312 ~~g~-~~g~~~~~P~~~~~ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~ 389 (893)
..|. |.|++|.||++++.+||++++||+ +++|||+ |+|||||++||+++++++|+++++||+ +|+
T Consensus 254 ~~g~~L~g~~~~~P~~~~~~~vi~~~~V~-~~~GTGiV~~~Pah~~~Dy~~~~~~~l~~~~~id~-~G~----------- 320 (601)
T PF00133_consen 254 FRGKELVGLKYIHPLTGREVPVIPDDFVD-MDKGTGIVHSAPAHGPDDYEIGKKHNLPIINPIDE-DGR----------- 320 (601)
T ss_dssp EECHHHTTSEEE-TTSSSSEEEEEETTS--SSSTTSEEEE-TTT-HHHHHHHHHHHHCCGCCCCC-TST-----------
T ss_pred cCcceecCcEeccccccceeEEEcccccc-cccchhhhhhcccCCHHHHHHHhhcCceeeEecCC-Cce-----------
Confidence 6676 899999999999999999999999 9999999 999999999999999999999999997 553
Q ss_pred cCCccccc-cCCCCCCCCHHHHHHHHHHHHHHcCCCCee----------------e------------------------
Q psy2890 390 DKENCYCI-NSCKYNNMSHKEATNAISTDLIKLGLGNKK----------------N------------------------ 428 (893)
Q Consensus 390 ~~g~~~~~-~s~~~~gl~~~~a~~~i~~~L~~~~~~~~~----------------~------------------------ 428 (893)
+. ..++|.|+.+.+||++|++.|++.|.+.+. +
T Consensus 321 ------~~~~~~~~~G~~v~~ar~~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~~ii~~~~~QWFi~~~~~k~~~l~~~~ 394 (601)
T PF00133_consen 321 ------FTEEAGKFKGMKVFEAREKIIEDLKEKGLLLKIEEIEHSYPHCWRSGTPIIPRLTDQWFIKYDDWKKKALEALE 394 (601)
T ss_dssp ------BBSCCSTTTTSBHHHHHHHHHHHHHHTTSEEEEEEEEEEEEEETTTSCBEEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred ------EeecccccCCceeeeccHHHHHHHHHhhhhccccccccccceecCCCCEEEecccceeEEecHHhHHHHHhhcc
Confidence 33 357999999999999999999999984221 1
Q ss_pred --Ee--------------eecceeeccccccCCccCeEEcCCCCeeecCCCCCCccCCCccCC-CCcccccccccccccC
Q psy2890 429 --IF--------------RLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVP-NNLLKENKKFLHVSCP 491 (893)
Q Consensus 429 --~~--------------~l~DW~ISRQr~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~-g~~l~~~~~~~~~~c~ 491 (893)
++ +++|||||||||||+|||+|+|++|+.+.++.+.++.. +..+.. |.+...+..+ ...|+
T Consensus 395 ~i~~~P~~~~~~~~~~i~~l~DWcISRQR~WG~PIPiw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~ 472 (601)
T PF00133_consen 395 KIKFYPESYRKRFENWIDNLRDWCISRQRYWGTPIPIWYCEDCGEVLVIESTIELI-ADRVEKEGIDAWLHKPA-EDKLP 472 (601)
T ss_dssp TSEESSSTCHHHHHHHHHT--EEE-EESSSSSEBETEEEETTSEEEECCGGHHHHH-HHHSTHHHHSCTSSHHH-HHHHT
T ss_pred cceEEcccchhhhhhhccccccchhhccCCCCccceeeecccCccccccccccccc-ccccccccccccccccc-ccccc
Confidence 11 57899999999999999999999999887754322111 000000 1100000111 13457
Q ss_pred CCCccceecCCccccccccc-chhhhhcCCCccccCCChhhhhccCCceeeecchhhHHHHHHHHHHHHHHHHHhcCccC
Q psy2890 492 KCNKLAFRETDTMDTFVDSS-WYYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKF 570 (893)
Q Consensus 492 ~~g~~~~re~d~~D~WfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~ 570 (893)
.|+..++|++|||||||||+ |++..+.+|++ +++++++|+|+|++++|+||...|+.++.+.+.. +.+
T Consensus 473 ~~~~~~~~~~dvlD~WfdSg~~~~~~~~~~~~-----~~~~~~~~~P~D~~~~G~D~~~~W~~~~l~~~~~------l~~ 541 (601)
T PF00133_consen 473 CCGGELRRDTDVLDTWFDSGLWPFAVLGWPEN-----DREEFEYWYPVDLYIEGKDQIRGWFQSSLFLSVA------LFG 541 (601)
T ss_dssp TTSSEEEEHS-EE-HHHHHCTCHHHHTTSTTC-----SCHHHHHHSSBSEEEEEGGGTTTHHHHHHHHHHH------HSS
T ss_pred ccccceEEeeeeccccccccCCcccccccccc-----cchhccccCCcccccCCccchhhHHHHhHhhccc------ccc
Confidence 78999999999999999997 77888888875 4678999999999999999988876655544433 356
Q ss_pred CCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceeccccccccCCCCccCccchh
Q psy2890 571 NEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQI 650 (893)
Q Consensus 571 ~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii 650 (893)
+.||++|++||||+ | .+| +|||||+||+|+|.++|
T Consensus 542 ~~pfk~v~~hG~vl-------d-~~G-------------------------------------~KMSKS~GNvi~p~~ii 576 (601)
T PF00133_consen 542 KEPFKKVITHGFVL-------D-EDG-------------------------------------RKMSKSKGNVIDPEDII 576 (601)
T ss_dssp STSBSEEEEE--EE-------E-TTS-------------------------------------SB-BTTTTB--BHHHHH
T ss_pred CCchheeeeccccc-------c-cce-------------------------------------eecccCCCcccCHHHHH
Confidence 78999999999999 5 666 89999999999999999
Q ss_pred hhhCchhHHHHHHhcCCCCCCcccC
Q psy2890 651 NTYGADSTRLFIIFSAPPEKNLEWS 675 (893)
Q Consensus 651 ~~yGaD~lRl~ll~~~~~~~d~~~~ 675 (893)
++||||++|||+++++++.+|++||
T Consensus 577 ~~yGaD~lRl~~~~~~~~~~D~~~s 601 (601)
T PF00133_consen 577 EKYGADALRLWLASSADPGQDINFS 601 (601)
T ss_dssp HHT-HHHHHHHHHHHS-TTS-EEE-
T ss_pred HHhCcHHHHHHHHhcCCcccCcccC
Confidence 9999999999999999999999996
No 27
>KOG0433|consensus
Probab=100.00 E-value=5.1e-104 Score=876.39 Aligned_cols=682 Identities=19% Similarity=0.296 Sum_probs=525.0
Q ss_pred CCCchHHHHHHHHHHHhCCCcccCCCCCCCCCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccc
Q psy2890 4 KYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWD 83 (893)
Q Consensus 4 ~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D 83 (893)
++|....+.+.++.|....++....+.+ ++..|.+.+ +||.||||||+|++++||+.||+.++|++|++++|||
T Consensus 29 ~~Ns~gr~~q~~evi~~~~~~~~qls~~--q~~~f~L~d----anG~lhlghalnkILkdIinr~~laqg~~alyvpGwD 102 (937)
T KOG0433|consen 29 HFNSTGRIGQVIEVIQPPEILSSQLSDQ--QRVEFELKD----ANGNLHLGHALNKILKDIINRILLAQGKSALYVPGWD 102 (937)
T ss_pred ccccccchHHHHHHhCChHHHHHHHhhc--cCceEEEec----cCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCCC
Confidence 5777778888999999988887655432 366788888 9999999999999999999999999999999999999
Q ss_pred cccHHHH-HHHHHc------CCCH-------HHHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHHHHHHhc
Q psy2890 84 AFGMPAE-NAAILN------NTSP-------AKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKR 149 (893)
Q Consensus 84 ~~G~pie-~~a~~~------g~~~-------~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~ 149 (893)
|||+||| .+|.+. .++| +.++++.++.+++.|+|+||..||.+.|.|++|.|...+.++|.+|++|
T Consensus 103 chGLPiEs~kalssl~~~~~~~s~leiR~~Ar~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~~lyek 182 (937)
T KOG0433|consen 103 CHGLPIESTKALSSLTESEGSRTPLEIRAKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEK 182 (937)
T ss_pred cCCCchHHHHHhhhhhhccccCCcHHHHHHHHHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHHHHHhc
Confidence 9999999 466542 2344 4678899999999999999999999999999999999999999999999
Q ss_pred CcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHHHHhhcc
Q psy2890 150 GIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIG 229 (893)
Q Consensus 150 Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~wi~ 229 (893)
|||||..+||+|+|+..|+||+.|+. |-+ + +
T Consensus 183 gLvyR~~KPVyWSpSSRTALAEaELE------------Yn~---------------------n----------------H 213 (937)
T KOG0433|consen 183 GLVYRSFKPVYWSPSSRTALAESELE------------YND---------------------N----------------H 213 (937)
T ss_pred cceeccCCcceecCcchhhhhhhhcc------------CCc---------------------C----------------C
Confidence 99999999999999999999997764 221 1 3
Q ss_pred cccceeeeeccccCCCC-CC-ccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhchH--HH----HHHHHHHhh
Q psy2890 230 KSKGIFLAFPHNIKDPN-KN-NKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNL--LL----QKFILEYKK 301 (893)
Q Consensus 230 ~s~~~~i~f~~~~~~~~-~~-~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~--~~----~~~~~~~~~ 301 (893)
.|.++|++|++.+.+.. .. ....++.++.||||+|||||+|.||++||+..|......++. .+ ...++++..
T Consensus 214 ~S~S~Y~~F~L~~~S~~~~~~~~~~~~iyaLVWTTTPWTlPsN~Ai~~n~~~~Yslv~~~~~~~~~~ylvas~L~~~fe~ 293 (937)
T KOG0433|consen 214 QSTSAYFRFKLINFSSSAHSEDSKIPQIYALVWTTTPWTLPSNNAISVNSAIQYSLVQFDNNPTSTFYLVASKLLEEFEK 293 (937)
T ss_pred cceeEEEEEeccCCccccccCCCccCcEEEEEEeCCCccccccceeeeccccceEEEEeccCCcceEEEEccchhhhhhh
Confidence 68899999999864421 00 112335789999999999999999999999998765443111 00 111222211
Q ss_pred cCcccc-cccccccc-ccceEEEcCCC-CCeeeEEEecccccCCCCCcc-ccCCCCCHHHHHHHHHcCCceeeeecCCCC
Q psy2890 302 NNNIES-NNLLKKSI-LTQLKVLHPLT-NQEIKVFVVNYVIEKSYGRAA-IGVPAHNKHDFYFAKKHSLLIKQVINVKNK 377 (893)
Q Consensus 302 ~~~~~~-~~~~~~g~-~~g~~~~~P~~-~~~ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g 377 (893)
...... ...+..|. +.|.+|.||+. ....|++.++||+ ++.|||+ |++||||++||.++-++||++.+.+|+ +|
T Consensus 294 ~~~~k~~i~~t~~g~~L~~~~Y~~pl~~~~~~P~l~g~hVT-~~~GTGLVHTAP~HG~eDYlv~l~~~l~~~s~VD~-~G 371 (937)
T KOG0433|consen 294 SSDRKCKIVGTVKGANLIGRRYKHPLHNELGLPILEGPHVT-DTVGTGLVHTAPAHGFEDYLVAISKGLRVESFVDS-RG 371 (937)
T ss_pred hcCcceeeeeecchhhccCceecCcCccccCCcccccccee-cCcccceeecCCCCChHHHHHHhhcCCCcccccCC-CC
Confidence 111011 23366787 79999999974 4579999999999 9999999 999999999999999999999999997 55
Q ss_pred CccccccccccccCCccccccCC-CCCCCCHH-HHHHHHHHHHH------------------------------------
Q psy2890 378 SYSDKIWKDWYIDKENCYCINSC-KYNNMSHK-EATNAISTDLI------------------------------------ 419 (893)
Q Consensus 378 ~~~~~~~~~~~~~~g~~~~~~s~-~~~gl~~~-~a~~~i~~~L~------------------------------------ 419 (893)
+ |+++ .| .+.|+.|. |..+.|+..|.
T Consensus 372 ~---------yT~e-------a~~~l~Gk~VL~eG~k~vl~~l~~~iv~~sky~HsYPYDWRTKKPvIiRAseQWFi~~e 435 (937)
T KOG0433|consen 372 C---------YTRE-------AGHDLDGKEVLGEGQKIVLRLLNHDIVHVSKYVHSYPYDWRTKKPVIIRASEQWFIDVE 435 (937)
T ss_pred c---------eecc-------cccccccchhhccccHhHHHHHhhhhhhhhcccccCCcccccCCceEEecchhheeeHH
Confidence 4 4432 22 45566654 44455555555
Q ss_pred -----------HcCCCCeee-------EeeecceeeccccccCCccCeEEcCCCCeeecCCCCCCccCC------CccCC
Q psy2890 420 -----------KLGLGNKKN-------IFRLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILP------ETCVP 475 (893)
Q Consensus 420 -----------~~~~~~~~~-------~~~l~DW~ISRQr~WG~pIPi~~~~~~~~v~v~~~~lpv~lp------~~~~~ 475 (893)
...+.-+.- .-...+|||||||.||+|||++|.++++.+.....-+.+... .|+.+
T Consensus 436 ~~k~~A~~al~~Vk~~P~~~~~rl~~~~~~R~~WCISRQR~WGvPIP~ly~k~~~~~l~ns~~~~h~~~~~eqeGsD~Ww 515 (937)
T KOG0433|consen 436 EIKKRASMALDDVKVAPGDSDLRLKQLVTTRPSWCISRQRVWGVPIPALYDKNGGSYLSNSLIEWHAKLTREQEGSDVWW 515 (937)
T ss_pred hhhhHHHHHHhhceeCCcchHHHHHHHHcCCCcceeeeccccCCcceeEEecCCCceeehHHHHHHHHHHHHHhCCcceE
Confidence 222111000 013468999999999999999999998877655321111000 01111
Q ss_pred -CCcccccccccccccCCCCccceecCCccccccccc--chhhhhcCCCccccCCChhhhhccCCceeeecchhhHHHHH
Q psy2890 476 -NNLLKENKKFLHVSCPKCNKLAFRETDTMDTFVDSS--WYYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHL 552 (893)
Q Consensus 476 -g~~l~~~~~~~~~~c~~~g~~~~re~d~~D~WfdSs--w~~~~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl 552 (893)
-++-+..+++..-..|....++.|.|||||+||||+ |.... ++ .+ =.++|+|.+|.|| |.
T Consensus 516 ~~~~eellpe~~~~e~~~~a~ey~kgtDimDVWFDSGssWs~v~---~~------~~-----~~~aDv~LEG~DQ---~r 578 (937)
T KOG0433|consen 516 EIDVEELLPEEEVREIPDIASEYKKGTDIMDVWFDSGSSWSAVL---DN------ER-----EHVADVYLEGVDQ---FR 578 (937)
T ss_pred eCChhHhCcHhhhcccchhHHHhccCCceeeeEecCCCcceeec---CC------CC-----CcceeeEEecchh---cc
Confidence 111122233333333344567899999999999994 76554 11 01 1468999999999 76
Q ss_pred HHHHHHHHHHHHhcCccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceecc
Q psy2890 553 LYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGG 632 (893)
Q Consensus 553 ~y~rf~~~~l~~~g~~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~ 632 (893)
+ ||.+.+|... ......||+.|++|||++ | ++|
T Consensus 579 G--WFQSsLLTsv-A~q~kAPYk~vivHGFtl-------D-E~G------------------------------------ 611 (937)
T KOG0433|consen 579 G--WFQSSLLTSV-AVQNKAPYKKVIVHGFTL-------D-ENG------------------------------------ 611 (937)
T ss_pred h--HHHHHHHHHH-HHhccCCchheeeeeeEe-------c-CCc------------------------------------
Confidence 5 5666666554 457789999999999999 6 666
Q ss_pred ccccccCCCCccCccchhhh------hCchhHHHHHHhcCCCCCCcccChhhhhHHHHHHHHHHHHHHhhhhcccccccc
Q psy2890 633 IEKMSKSKNNGIDPQTQINT------YGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFSYILAPRIINIINL 706 (893)
Q Consensus 633 ~~KMSKSkgN~i~p~~ii~~------yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~~~~l~rl~n~~~~~~~~~~~~~~~ 706 (893)
.|||||+||||+|+.+++. ||||+||||++ .+....++......+..+..-+.|+.+.+++++.++.+ +
T Consensus 612 -~KMSKSlGNVidP~~v~~G~~k~payGaD~LR~WVA-~~~~t~d~~iGp~il~qv~e~l~K~R~T~RfllGnl~d---~ 686 (937)
T KOG0433|consen 612 -NKMSKSLGNVVDPTMVTDGSLKQPAYGADGLRFWVA-GSENTGESKIGPKILDQVDEKLIKFRNTFRFLLGNLQD---F 686 (937)
T ss_pred -cchhhcccCcCCHHHHhCCcccCCCccccceeeeee-cccccCceecCHHHHHHHHHHHHHHHhHHHHHhhcccc---c
Confidence 8999999999999999998 99999999999 55778899999999999999999999999999875432 2
Q ss_pred ccccCCccccCCChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HHHHh----hcccccCCCC----CcccH
Q psy2890 707 NIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIFN-ILERI----NSETKFDNNK----NTNND 777 (893)
Q Consensus 707 ~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fvn-~l~~~----~k~~~~~~~~----~~~~~ 777 (893)
+.+....+...+.-.|+++|.+++.+++++.+.|++|+|+++++.+..|++ +++++ .++|+|++.. ..+++
T Consensus 687 ~~~~~~~p~~dl~~iDq~~L~ql~~~~~~i~e~Y~~Y~f~kVv~~lq~F~~~~lSa~YfdivKDRLY~~~~~s~~rrs~Q 766 (937)
T KOG0433|consen 687 DGKQVKFPLKDLRYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDLQQFLQRNLSAFYFDIVKDRLYCDKVGSESRRSAQ 766 (937)
T ss_pred CCccccccchhhhhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 211112244556677999999999999999999999999999999999984 78774 4889998643 24789
Q ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHhhccCCCCCeeeccCCCCChhhhh
Q psy2890 778 ILLYEGMSIFLRVLNPIAPHITHILWKELKYSIQQGDILNACWPKIDSLALE 829 (893)
Q Consensus 778 ~~l~~~l~~ll~LL~P~~P~isEEIwq~L~~~~~~~sI~~~~wP~~d~~~~~ 829 (893)
++|.+++..++++++||+||++||+||.|+.. .+-++...||..++....
T Consensus 767 ttL~h~l~~l~~~iaPIlP~LaeEvwq~lP~~--~~~~f~~k~~~l~s~~~~ 816 (937)
T KOG0433|consen 767 TTLHHLLHNLAHIISPILPHLAEEVWQHLPGS--HEKIFRLKWEDLHSGLLT 816 (937)
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHhCCCC--CCcccccCccccchhhcC
Confidence 99999999999999999999999999999942 344999999998876554
No 28
>KOG0434|consensus
Probab=100.00 E-value=1.2e-100 Score=839.77 Aligned_cols=745 Identities=22% Similarity=0.338 Sum_probs=573.3
Q ss_pred CCCCchHHHHHHHHHHHhCCCcccCCCCCCCCCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCcccccccc
Q psy2890 3 KKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGW 82 (893)
Q Consensus 3 ~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~ 82 (893)
+.+|+.+-|+++.++|.+.+.|+.+...+ +++|+|.+.++||+++|.+|.||++.-+|+|+..||..|.||.|-..+||
T Consensus 6 ~n~nfp~eEEkvle~W~e~~aF~~slk~s-k~rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFGW 84 (1070)
T KOG0434|consen 6 ENFNFPKEEEKVLEFWREIDAFHTSLKLS-KGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFGW 84 (1070)
T ss_pred ccCCCchhHHHHHHHHHHhhHHHHHHHhh-CCCCceeeccCCccccCCCccchhhhhhHHHHHHHHhhccccceeeeccc
Confidence 45999999999999999999999865433 45899999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHH-cCCC----------------HHHHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHHHH
Q psy2890 83 DAFGMPAENAAIL-NNTS----------------PAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLK 145 (893)
Q Consensus 83 D~~G~pie~~a~~-~g~~----------------~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~ 145 (893)
||||+|+|....+ .|++ |+.++.+|...+++...|||-|+|+++-|.|++|.+++.|+|+|++
T Consensus 85 D~HGlPVE~eIDKkLgI~g~~dV~kmGI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvFke 164 (1070)
T KOG0434|consen 85 DTHGLPVEYEIDKKLGITGRDDVMKMGIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVFKE 164 (1070)
T ss_pred ccCCCccceeechhcCCCCHHHHHHHhHHhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHHHHHH
Confidence 9999999987643 3443 7888999999999999999999999999999999999999999999
Q ss_pred HHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHHHH
Q psy2890 146 MFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQV 225 (893)
Q Consensus 146 L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~ 225 (893)
|++||++|+|-+.++||..|.|.|||-|--++ ||++
T Consensus 165 L~~kglVYRG~kVMP~STac~TPLSNFEa~QN----------YKdV---------------------------------- 200 (1070)
T KOG0434|consen 165 LHEKGLVYRGFKVMPYSTACTTPLSNFEAQQN----------YKDV---------------------------------- 200 (1070)
T ss_pred HHhcCceecceeeeccccccCCcccchhcccC----------cccC----------------------------------
Confidence 99999999999999999999999999765432 2221
Q ss_pred hhcccccceeeeeccccCCCCCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhchHHH----HHHHHHHhh
Q psy2890 226 NWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLL----QKFILEYKK 301 (893)
Q Consensus 226 ~wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~~~----~~~~~~~~~ 301 (893)
..+++.|.|++.++. +..+++|||+|||||+|-|+||||+..|++..-+..... +.-+..+.+
T Consensus 201 ----~DPav~v~F~li~~~---------~~slvAWTTTPWTLPSNlal~Vnp~~~Yvki~dk~~~k~yil~esrl~~l~k 267 (1070)
T KOG0434|consen 201 ----PDPAVFVAFPLIGDP---------NVSLVAWTTTPWTLPSNLALCVNPDFQYVKIKDKTTGKKYILMESRLGELYK 267 (1070)
T ss_pred ----CCCeEEEEeeccCCc---------ceeEEEEecCCccCccceeEEEcCCeEEEEEEeccCCeEEEEeHHHHHHHhc
Confidence 136799999998543 678999999999999999999999999876543321110 111111111
Q ss_pred cCcccc--cccccccc-ccceEEEcCCC-------CCeeeEEEecccccCCCCCcc-ccCCCCCHHHHHHHHHcCC----
Q psy2890 302 NNNIES--NNLLKKSI-LTQLKVLHPLT-------NQEIKVFVVNYVIEKSYGRAA-IGVPAHNKHDFYFAKKHSL---- 366 (893)
Q Consensus 302 ~~~~~~--~~~~~~g~-~~g~~~~~P~~-------~~~ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~~~~~~~l---- 366 (893)
....+. ....+.|. +.|++|..++. ...+.|++++||+ .+.|||+ |++|+.|..||.+|..+|+
T Consensus 268 ~~~~~~~eiler~~G~~L~g~kYeplF~YF~~~~~~~aFrvl~d~yVt-~~sGTGiVH~AP~FGe~Dy~~c~~~giI~~d 346 (1070)
T KOG0434|consen 268 NPKNDNYEILERFQGAALVGLKYEPLFPYFAETFEEGAFRVLSDDYVT-EDSGTGIVHQAPAFGEEDYRACVANGIIRKD 346 (1070)
T ss_pred CcccccHHHHHhcccccccCcccCccchHHHHHhccCceEEeccCcEe-cCCCceeeecCCccChhhHHHHHHcCcccCC
Confidence 111111 33456776 78999987762 3479999999999 9999999 9999999999999999886
Q ss_pred -ceeeeecCCCCCccccccccccccCCccccccCCCCCCCCHHHHHHHHHHHHHHcCCCCe-------------------
Q psy2890 367 -LIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNK------------------- 426 (893)
Q Consensus 367 -~~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~~s~~~~gl~~~~a~~~i~~~L~~~~~~~~------------------- 426 (893)
.+.+.+|+ .+.|+++ ...|+|..+++|.+.||+.|++.|.+-+
T Consensus 347 ~~~~cpVDe----------~G~~Tse-------v~dfaG~YVKDaDK~Ii~~lk~~g~lv~~~~i~HsYPFCWRSDTPLi 409 (1070)
T KOG0434|consen 347 SLPPCPVDE----------SGLFTSE-------VTDFAGQYVKDADKLIIRSLKASGRLVKASQITHSYPFCWRSDTPLI 409 (1070)
T ss_pred CCCCCcccc----------CCccccc-------cccccceeeccchHHHHHHHHhcCceeeeeeeeeccCceecCCChHH
Confidence 23344444 3345543 3479999999999999999999997322
Q ss_pred -----------------------eeEe---------------eecceeeccccccCCccCeEEcCCCCeeecCC--CCCC
Q psy2890 427 -----------------------KNIF---------------RLRDWAISRQRYWGTPIPIIYCDSCGSVPVPE--KDLP 466 (893)
Q Consensus 427 -----------------------~~~~---------------~l~DW~ISRQr~WG~pIPi~~~~~~~~v~v~~--~~lp 466 (893)
++.| +.|||.|||+||||||||+|..++..++..-. ++|.
T Consensus 410 YraVPsWFVrVk~~v~~ll~nn~~t~WVP~~ikeKRF~NWL~nARDW~iSRnR~WGTPIpLWVSdD~eevVcigSi~eLE 489 (1070)
T KOG0434|consen 410 YRAVPSWFVRVKNIVDQLLRNNMKTHWVPQNIKEKRFANWLKNARDWNISRNRYWGTPIPLWVSDDYEEVVCIGSIKELE 489 (1070)
T ss_pred HhhccHhhhhHHHHHHHHHhcccccccCChhhhHHHHHHHHhhhhhcccccccccCCCcceEEccCCceEEEeccHHHHH
Confidence 1111 57899999999999999999999987754321 1111
Q ss_pred ccCCCccCCCCcc-ccccccc-ccccCC-CCc-cceecCCcccccccc-cchhhhhcCCCccccCCChhhhhccCCceee
Q psy2890 467 VILPETCVPNNLL-KENKKFL-HVSCPK-CNK-LAFRETDTMDTFVDS-SWYYMRYISPKLENFMIDDNKINYWMPVDQY 541 (893)
Q Consensus 467 v~lp~~~~~g~~l-~~~~~~~-~~~c~~-~g~-~~~re~d~~D~WfdS-sw~~~~~~~p~~~~~~~~~~~~~~~~PvD~~ 541 (893)
. |. |-.. +.|++.+ +++.|+ ||+ .++|..+|||+||+| ||+|+.-++|.. ++++|+.-+|+|+.
T Consensus 490 e-LS-----G~kItDlHRe~iD~itIps~~gkg~l~Rv~eVfDCWFESGSMPYAq~HyPFe-----nk~~fe~~fPadFI 558 (1070)
T KOG0434|consen 490 E-LS-----GVKITDLHRESIDHITIPSKKGKGVLHRVSEVFDCWFESGSMPYAQRHYPFE-----NKEEFEENFPADFI 558 (1070)
T ss_pred H-hc-----CCcchhhhhhhcCceecccCCCCcceehhhhHhhhhhccCCCcchhhcCCcc-----chHHHhhcCchHhh
Confidence 0 00 2111 1223332 356665 443 699999999999999 599999999986 45667778999999
Q ss_pred ecchhhHHHHHHHHHHHHHHHHHhcCccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceee
Q psy2890 542 IGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAIL 621 (893)
Q Consensus 542 igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~ 621 (893)
.+|.||.. .||++. +.-..++.+++|||+|+++|+|++ ++|
T Consensus 559 aEGlDQTR-----GWFYTL-~VlsT~LF~kppfkNvIvnGlVLA--------eDG------------------------- 599 (1070)
T KOG0434|consen 559 AEGLDQTR-----GWFYTL-LVLSTALFGKPPFKNVIVNGLVLA--------EDG------------------------- 599 (1070)
T ss_pred hhcccccc-----chhhHH-HHHHHHHcCCCcchheeEeeeEEe--------ccc-------------------------
Confidence 99999964 245553 444445788999999999999996 666
Q ss_pred ecCCCcceeccccccccCCCCccCccchhhhhCchhHHHHHHhcCCC--CCCcccChhhhhHH-HHHHHHHHHHHHhhhh
Q psy2890 622 KLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPP--EKNLEWSDIGIEGA-YRFLNRVWNFSYILAP 698 (893)
Q Consensus 622 ~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~~~~~--~~d~~~~~~~i~~~-~~~l~rl~n~~~~~~~ 698 (893)
+|||||+.|.-||..+|++||||||||||+.+ |. .+.+.|.++++.+. .+.+.-.||..+|+..
T Consensus 600 ------------~KMSKrlkNYPdP~~iinkYGADalRlYLInS-PVvraE~LkFkeeGVrevvk~v~lPW~NsyrF~~q 666 (1070)
T KOG0434|consen 600 ------------KKMSKRLKNYPDPSLIINKYGADALRLYLINS-PVVRAENLKFKEEGVREVVKDVLLPWYNSYRFLVQ 666 (1070)
T ss_pred ------------HHHhhhhhcCCCHHHHHHhhcchheeeeeecC-ccccccccccchhhHHHHHHhhhhhhhHHHHHHHH
Confidence 89999999999999999999999999999954 55 56999999999886 4567788899999876
Q ss_pred cccccccc--ccccCCccccCCChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhc---ccccCCCCC
Q psy2890 699 RIINIINL--NIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIFNILERINS---ETKFDNNKN 773 (893)
Q Consensus 699 ~~~~~~~~--~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fvn~l~~~~k---~~~~~~~~~ 773 (893)
+....+.. .++.-.....+.+.+|+||++..++++.-+++.|+.|++.+++-.+..|+.+|.+++- +++..++..
T Consensus 667 n~~~~~~~~g~~f~~~~~~~S~NvmDrWI~a~~qslv~fv~~eM~~YrLytVvp~llkfiD~LTNwYiR~nRrrlkGe~G 746 (1070)
T KOG0434|consen 667 NAALLKKETGKDFVFDDSVTSSNVMDRWILASTQSLVGFVREEMDQYRLYTVVPRLLKFIDELTNWYIRFNRRRLKGENG 746 (1070)
T ss_pred HHHHhccccCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHheehhhhHHHHHHHHHHhhhhheehhhhhhcCCCc
Confidence 42111100 0000000112446789999999999999999999999999999999999999887541 122222221
Q ss_pred ----cccHHHHHHHHHHHHHHhcccccchHHHHHHHhhccC-------CCCCeeeccCCCCChhhhhh----HHHHHHHH
Q psy2890 774 ----TNNDILLYEGMSIFLRVLNPIAPHITHILWKELKYSI-------QQGDILNACWPKIDSLALEE----EKEEVKLI 838 (893)
Q Consensus 774 ----~~~~~~l~~~l~~ll~LL~P~~P~isEEIwq~L~~~~-------~~~sI~~~~wP~~d~~~~~~----~~~~~~~v 838 (893)
-.+..+|..+|..++++|+||.||+||.+||.|.... ...|||...+|.+.+...++ ....|..+
T Consensus 747 ~~d~~~AL~~Lf~vL~t~~r~MaPfTPF~tE~iyq~Lk~~~~~~~~~~~~~SVHfl~~P~~~~~~~de~ve~~v~~m~si 826 (1070)
T KOG0434|consen 747 EHDCHNALNVLFEVLFTLVRVMAPFTPFFTEYIYQNLKKYIPIDKNEKSERSVHFLSYPTPKEELIDETVERRVERMQSI 826 (1070)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhcCCccccCCccceeEEeecCCchhhhccchHHHHHHHHHHH
Confidence 2578899999999999999999999999999997532 24689999999998877663 23456677
Q ss_pred HHhhhhcceEEEecCCCCHHHHH------HHHhhChhHHHHhcC--CCEEEEEeCC
Q psy2890 839 IQINGKFRGHIFVKKKCTTDFIK------KIVLKNKVIQKYIIH--PPKKFFIIPN 886 (893)
Q Consensus 839 v~i~gk~R~~~~v~~~~~~e~i~------~~~~~~~~v~k~l~~--~i~kvi~vp~ 886 (893)
|...+.+|.+-+++.+.+..++. ++...-+.+.+|+.. +|+++++.-.
T Consensus 827 Idl~R~iRern~islKtPLK~~ivi~~d~~~ledik~l~~yI~eElNVr~v~~~~d 882 (1070)
T KOG0434|consen 827 IDLARNIRERNTISLKTPLKELIVIHSDEEYLEDIKSLERYILEELNVREVVFTSD 882 (1070)
T ss_pred HHHHHHHhhccCCcccCchhheEEEcCCHHHHHHHHHHHHHHHHhhcceeeeeccc
Confidence 77778899888887764433321 111122245566655 8888877553
No 29
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=9.4e-80 Score=738.58 Aligned_cols=458 Identities=23% Similarity=0.348 Sum_probs=389.6
Q ss_pred CCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy2890 35 NGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQ 114 (893)
Q Consensus 35 ~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~ 114 (893)
+++|+|++|+|||||.+||||+++++++|+++||+||+|++|+|++|+|+||+||+.+|+++|.+|+++++++.+.|+++
T Consensus 3 ~~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~ 82 (648)
T PRK12267 3 KKTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKEL 82 (648)
T ss_pred CCCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhcc-CcccCCCcccEEEeece
Q psy2890 115 LSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVIN-GRGWRSDAIIEKKKIPM 193 (893)
Q Consensus 115 l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~-g~c~~~~~~v~~~~~~~ 193 (893)
|++|||++| .+++|+++.|.+.++++|.+|+++|+||++...++||+.|+++|++.++++ |+|++||.++++++++|
T Consensus 83 l~~lgI~~D--~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~~~~~c~~cg~~~e~~~~~~ 160 (648)
T PRK12267 83 WKKLDISYD--KFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLVDGGKCPDCGREVELVKEES 160 (648)
T ss_pred HHHcCCCCC--CCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhccCCcCCCCCCcCeEEecce
Confidence 999999998 899999999999999999999999999999999999999999999999988 89999999999999999
Q ss_pred eeEEecchHHHHHHHHHhhCCC--ChHHHHHHHH-hhcccccceeeeeccccCCCCCCccccCCcEEEEEeccccccccc
Q psy2890 194 YYAKITNYAEELLEYVKKKLPY--WPKKVRLMQV-NWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGI 270 (893)
Q Consensus 194 ~~~~l~~~~~~l~~~~~~~~~~--~p~~~~~~~~-~wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~ 270 (893)
|||+|++|++.|.+++ +..+. ||+++++.+. +||
T Consensus 161 ~f~~l~~~~~~l~~~~-~~~~~~~~p~~~~~~~~~~~l------------------------------------------ 197 (648)
T PRK12267 161 YFFRMSKYQDRLLEYY-EENPDFIQPESRKNEMINNFI------------------------------------------ 197 (648)
T ss_pred EEEEcHHHHHHHHHHH-hhCCcccCCHHHHHHHHHHHh------------------------------------------
Confidence 9999999999999999 43332 3444333322 222
Q ss_pred cEEEECCCChHHHHHhhchHHHHHHHHHHhhcCccccccccccccccceEEEcCCCCCeeeEEEecccccCCCCCccccC
Q psy2890 271 TFCVISPEHPLAIFAARNNLLLQKFILEYKKNNNIESNNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAAIGV 350 (893)
Q Consensus 271 ~~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipv~~~~~V~~~~~GTG~~~~ 350 (893)
T Consensus 198 -------------------------------------------------------------------------------- 197 (648)
T PRK12267 198 -------------------------------------------------------------------------------- 197 (648)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCHHHHHHHHHcCCceeeeecCCCCCccccccccccccCCccccccCCCCCCCCHHHHHHHHHHHHHHcCCCCeeeEe
Q psy2890 351 PAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNKKNIF 430 (893)
Q Consensus 351 Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~~s~~~~gl~~~~a~~~i~~~L~~~~~~~~~~~~ 430 (893)
++
T Consensus 198 --------------------------------------------------------------------~~---------- 199 (648)
T PRK12267 198 --------------------------------------------------------------------KP---------- 199 (648)
T ss_pred --------------------------------------------------------------------hC----------
Confidence 10
Q ss_pred eecceeeccccc-cCCccCeEEcCCCCeeecCCCCCCccCCCccCCCCcccccccccccccCCCCccceecCCccccccc
Q psy2890 431 RLRDWAISRQRY-WGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKENKKFLHVSCPKCNKLAFRETDTMDTFVD 509 (893)
Q Consensus 431 ~l~DW~ISRQr~-WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~g~~l~~~~~~~~~~c~~~g~~~~re~d~~D~Wfd 509 (893)
.++||||||||+ ||+|||.. +.+|||||||
T Consensus 200 ~l~D~~ISR~~~~WGipvP~~-------------------------------------------------~~~v~yVWfD 230 (648)
T PRK12267 200 GLEDLSISRTSFDWGIPVPFD-------------------------------------------------PKHVVYVWID 230 (648)
T ss_pred CCCCcccCCCCCCcceECCCC-------------------------------------------------CCCEEEEccc
Confidence 278999999984 99999951 2359999999
Q ss_pred cc-chhhhhcCCCccccCCChhhhhccCCceeeecchhhHHHHHHHHHHHHHHHHHhcCccCCCccceeeecceEeceee
Q psy2890 510 SS-WYYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTY 588 (893)
Q Consensus 510 Ss-w~~~~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pfk~l~~~G~v~~~~~ 588 (893)
|+ .|+...++|.. +.+.++.|+|.|+|+.|+|++.+|.+ ||+.+|+..|+ .||++|++||+++
T Consensus 231 A~~~y~s~~~~~~~-----~~~~~~~~wp~~~~~~GkDii~fH~i---~wpa~l~~~~~----~~p~~v~~hg~l~---- 294 (648)
T PRK12267 231 ALLNYITALGYGSD-----DDELFKKFWPADVHLVGKDILRFHAI---YWPIMLMALGL----PLPKKVFAHGWWL---- 294 (648)
T ss_pred chHHHHHHcCCCCC-----CchHHHhhcccceEEEeeeecchhHH---HHHHHHHhCCC----CCCcEEEecceEE----
Confidence 97 55555556542 12357778899999999999999954 78988887764 7999999999998
Q ss_pred eecccCCCCccccCCCcccccccCCCCccceeeecCCCcceeccccccccCCCCccCccchhhhhCchhHHHHHHhcCCC
Q psy2890 589 YRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPP 668 (893)
Q Consensus 589 ~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~~~~~ 668 (893)
.+| +|||||+||+|+|.+++++||+|++||||+..++.
T Consensus 295 -----~eg-------------------------------------~KMSKS~GN~i~p~d~l~~ygaD~lR~~L~~~~~~ 332 (648)
T PRK12267 295 -----MKD-------------------------------------GKMSKSKGNVVDPEELVDRYGLDALRYYLLREVPF 332 (648)
T ss_pred -----ECC-------------------------------------ceecccCCcccCHHHHHHHcCCcHHHHHHHhcCCC
Confidence 344 89999999999999999999999999999999999
Q ss_pred CCCcccChhhhhHH--HHHHHHHHHHHHhhhhcccc--ccccccccCCccccCCChhHHHHHHHHHHHHHHHHHHHhcCC
Q psy2890 669 EKNLEWSDIGIEGA--YRFLNRVWNFSYILAPRIIN--IINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQ 744 (893)
Q Consensus 669 ~~d~~~~~~~i~~~--~~~l~rl~n~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~ 744 (893)
++|.+|+++.+... ..+++.++|++.++...... ...+ +.....+..|+|++++++++++++.++|++|+
T Consensus 333 ~~D~~fs~~~~~~~~n~~l~~~lgNl~~R~~~~~~~~~~~~~------p~~~~~~~~D~~ll~~l~~~~~~v~~~~e~~~ 406 (648)
T PRK12267 333 GSDGDFSPEALVERINSDLANDLGNLLNRTVAMINKYFDGEI------PAPGNVTEFDEELIALAEETLKNYEELMEELQ 406 (648)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcC------CCCCCCchhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999998764 34678888887765531111 0111 01223467799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccCCC-----CC---cccHHHHHHHHHHHHHHhcccccchHHHHHHHhhc
Q psy2890 745 YNTVVSGCMKIFNILERINSETKFDNN-----KN---TNNDILLYEGMSIFLRVLNPIAPHITHILWKELKY 808 (893)
Q Consensus 745 f~~ai~~l~~fvn~l~~~~k~~~~~~~-----~~---~~~~~~l~~~l~~ll~LL~P~~P~isEEIwq~L~~ 808 (893)
|++|++.+++|++..|.|+.....|.. +. .+...+++++++.+++||+|||||+||+||+.|+.
T Consensus 407 ~~~al~~i~~~~~~~N~Yi~~~kpW~~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~ae~i~~~Lg~ 478 (648)
T PRK12267 407 FSRALEEVWKLISRANKYIDETAPWVLAKDEGKKERLATVMYHLAESLRKVAVLLSPFMPETSKKIFEQLGL 478 (648)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhhhcCcccHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHcCC
Confidence 999999999999988888865444421 11 13456788889999999999999999999999985
No 30
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.8e-78 Score=714.94 Aligned_cols=473 Identities=20% Similarity=0.307 Sum_probs=382.9
Q ss_pred CcEEEEecCCCCCCcCcchHHHhH-HHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy2890 36 GKFYTCSMLPYPSGKLHMGHVRNY-TINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQ 114 (893)
Q Consensus 36 ~~~~i~~~~P~~nG~lHiGH~~~~-~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~ 114 (893)
++|+|++|||||||.|||||++++ +++|+++||+||+|++|.+++|+|+||+||+.+|++.|+++.++++++.+.|+++
T Consensus 3 ~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 82 (556)
T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKED 82 (556)
T ss_pred CcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 579999999999999999999997 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccC-------------
Q psy2890 115 LSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWR------------- 181 (893)
Q Consensus 115 l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~------------- 181 (893)
+++|||++| .+++|++|+|.+.++++|.+|+++|+||++.++|+|||.|+|+|++..+. |.||.
T Consensus 83 ~~~l~i~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~-g~cp~c~~~~~~G~~ce~ 159 (556)
T PRK12268 83 FKKLGISYD--LFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVE-GTCPYCGYEGARGDQCDN 159 (556)
T ss_pred HHHcCCcCC--CCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCcccee-ccCCCCCCcccCCchhhh
Confidence 999999877 68999999999999999999999999999999999999999999997664 55544
Q ss_pred -----------------CCcccEEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHHHHhhcccccceeeeeccccCC
Q psy2890 182 -----------------SDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIGKSKGIFLAFPHNIKD 244 (893)
Q Consensus 182 -----------------~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~wi~~s~~~~i~f~~~~~~ 244 (893)
||.+++++.++||||++++|++.|.+++ +...-||+.+++...+||.
T Consensus 160 cg~~~~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~-~~~~~~p~~~~~~~~~~l~--------------- 223 (556)
T PRK12268 160 CGALLDPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWI-ESSGDWPPNVLNFTLNWLK--------------- 223 (556)
T ss_pred ccccCChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHH-hhccCCCHHHHHHHHHHHh---------------
Confidence 5568899999999999999999999998 4444467666555444442
Q ss_pred CCCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhchHHHHHHHHHHhhcCccccccccccccccceEEEcC
Q psy2890 245 PNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYKKNNNIESNNLLKKSILTQLKVLHP 324 (893)
Q Consensus 245 ~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P 324 (893)
T Consensus 224 -------------------------------------------------------------------------------- 223 (556)
T PRK12268 224 -------------------------------------------------------------------------------- 223 (556)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCeeeEEEecccccCCCCCccccCCCCCHHHHHHHHHcCCceeeeecCCCCCccccccccccccCCccccccCCCCCC
Q psy2890 325 LTNQEIKVFVVNYVIEKSYGRAAIGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNN 404 (893)
Q Consensus 325 ~~~~~ipv~~~~~V~~~~~GTG~~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~~s~~~~g 404 (893)
.
T Consensus 224 ---------------------------------------------------~---------------------------- 224 (556)
T PRK12268 224 ---------------------------------------------------E---------------------------- 224 (556)
T ss_pred ---------------------------------------------------C----------------------------
Confidence 0
Q ss_pred CCHHHHHHHHHHHHHHcCCCCeeeEeeecceeeccccccCCccCeEEcCCCCeeecCCCCCCccCCCccCCCCccccccc
Q psy2890 405 MSHKEATNAISTDLIKLGLGNKKNIFRLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKENKK 484 (893)
Q Consensus 405 l~~~~a~~~i~~~L~~~~~~~~~~~~~l~DW~ISRQr~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~g~~l~~~~~ 484 (893)
+++||||||||+||+||| |++.
T Consensus 225 --------------------------~l~Dw~ISR~~~WGipiP-~~~~------------------------------- 246 (556)
T PRK12268 225 --------------------------GLKPRAITRDLDWGIPVP-WPGF------------------------------- 246 (556)
T ss_pred --------------------------CCCCcCceeeCCCCeeCC-CCCC-------------------------------
Confidence 277999999999999999 5432
Q ss_pred ccccccCCCCccceecCCcccccccccchhhhhcC--CCccccCCChhhhhccC----CceeeecchhhHHHHHHHHHHH
Q psy2890 485 FLHVSCPKCNKLAFRETDTMDTFVDSSWYYMRYIS--PKLENFMIDDNKINYWM----PVDQYIGGIEHAILHLLYARFW 558 (893)
Q Consensus 485 ~~~~~c~~~g~~~~re~d~~D~WfdSsw~~~~~~~--p~~~~~~~~~~~~~~~~----PvD~~igG~D~~i~Hl~y~rf~ 558 (893)
+..++++|||+.+.|+.... ... .+ +++.++.|+ |.++++.|+|+..+|. .+|
T Consensus 247 ---------------~~~~iyvW~da~~~y~~~~~~~~~~-~g--~~~~~~~~w~ds~~~~~~~~G~D~~~Fh~---~~~ 305 (556)
T PRK12268 247 ---------------EGKVFYVWFDAVIGYISASKEWAER-TG--DPEAWKEFWLDPETKSYYFIGKDNIPFHS---IIW 305 (556)
T ss_pred ---------------CCcEEEEeehHhhHHHHHHHHHHHh-cC--CchHHHHHhCCCCCeEEEEEeeccCcchH---HHH
Confidence 12478999998654432210 100 00 123455455 6789999999987774 467
Q ss_pred HHHHHHhcCccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceecccccccc
Q psy2890 559 TKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSK 638 (893)
Q Consensus 559 ~~~l~~~g~~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSK 638 (893)
+.++...|. .... ++++++||||+ .+| +||||
T Consensus 306 p~~l~~~~~-~~~~-P~~v~~~G~v~---------~~G-------------------------------------~KMSK 337 (556)
T PRK12268 306 PAMLLGSGE-PLKL-PDEIVSSEYLT---------LEG-------------------------------------GKFSK 337 (556)
T ss_pred HHHHHhcCC-CCCC-CCEeeccCCEE---------ECC-------------------------------------eeecc
Confidence 888877764 2333 46999999998 445 89999
Q ss_pred CCCCccCccchhhhhCchhHHHHHHhcCCCCCCcccChhhhhH--HHHHHHHHHHHHHhhhhcccc-ccccccccCCccc
Q psy2890 639 SKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEG--AYRFLNRVWNFSYILAPRIIN-IINLNIFHNDFSV 715 (893)
Q Consensus 639 SkgN~i~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~--~~~~l~rl~n~~~~~~~~~~~-~~~~~~~~~~~~~ 715 (893)
|+||+|+|.++|++||+|++|||+++.++.++|++|+++.+.. ..+++++++|++.++...... .... ...
T Consensus 338 S~GN~I~p~dli~~yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~~r~~~~~~~~~~~~------~~~ 411 (556)
T PRK12268 338 SRGWGIWVDDALERYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVNRVLSFIEKYFGGI------VPP 411 (556)
T ss_pred CCCcccCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHHHHHHHHHHHhcCCc------CCC
Confidence 9999999999999999999999999999999999999998765 345778888876654431110 0010 011
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccccCC---CCCc---ccHHHHHHHHHHHHH
Q psy2890 716 IKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIFNILERINSETKFDN---NKNT---NNDILLYEGMSIFLR 789 (893)
Q Consensus 716 ~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fvn~l~~~~k~~~~~~---~~~~---~~~~~l~~~l~~ll~ 789 (893)
...+..|+|++++++.+++.+.++|++|+|+.|++.+++|++..+.|+.....|. .+.. .+..++.++++.+++
T Consensus 412 ~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~l~~~~~~~n~yi~~~kpw~~~~~~~~~~~~~l~~~~~~l~~~~~ 491 (556)
T PRK12268 412 GELGDEDRELIAEAEALFKEVGELLEAGEFKKALEEIMELAREANKYLDEKAPWKLAKTDRERAATVLYTALNLVRLLAV 491 (556)
T ss_pred CcCCcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCChhhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 2356789999999999999999999999999999999999988888875543331 1122 234456678899999
Q ss_pred HhcccccchHHHHHHHhhccCCCCCeeeccCCCC
Q psy2890 790 VLNPIAPHITHILWKELKYSIQQGDILNACWPKI 823 (893)
Q Consensus 790 LL~P~~P~isEEIwq~L~~~~~~~sI~~~~wP~~ 823 (893)
||+|||||+|||||+.|+. +++..++||.+
T Consensus 492 lL~P~~P~~aeei~~~Lg~----~~~~~~~w~~~ 521 (556)
T PRK12268 492 LLYPFLPFSAQKIWEMLGG----ENIEKLTWESL 521 (556)
T ss_pred HhhCccchHHHHHHHHhCC----CCCcccchhhh
Confidence 9999999999999999975 35777889875
No 31
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=8.7e-77 Score=694.28 Aligned_cols=462 Identities=17% Similarity=0.251 Sum_probs=382.0
Q ss_pred CCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy2890 35 NGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQ 114 (893)
Q Consensus 35 ~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~ 114 (893)
+++|+|++|||||||.|||||+++++++|+++||+||+|++|++++|+|+||+||+.+|.++|.+|.++|+++++.++++
T Consensus 68 ~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~ 147 (616)
T PLN02224 68 ADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTL 147 (616)
T ss_pred CCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhcc-CcccCCCcccEEEeece
Q psy2890 115 LSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVIN-GRGWRSDAIIEKKKIPM 193 (893)
Q Consensus 115 l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~-g~c~~~~~~v~~~~~~~ 193 (893)
+++|||++| ++++|++|.|.+.|+++|.+|+++|+||++.++++|||+|++++++.|+++ ++|+.||.+++++++++
T Consensus 148 ~~~l~I~~D--~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~~~~~~~~~~~~~~~~~e~~ 225 (616)
T PLN02224 148 WKDLDIAYD--KFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELLENNCCPVHQMPCVARKEDN 225 (616)
T ss_pred HHHcCCCCC--cCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHcCCCCCCCCCCcceEEecce
Confidence 999999877 999999999999999999999999999999999999999999999999975 68999999999999999
Q ss_pred eeEEecchHHHHHHHHHhhCCC--ChHHHHHHHHhhcccccceeeeeccccCCCCCCccccCCcEEEEEecccccccccc
Q psy2890 194 YYAKITNYAEELLEYVKKKLPY--WPKKVRLMQVNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGIT 271 (893)
Q Consensus 194 ~~~~l~~~~~~l~~~~~~~~~~--~p~~~~~~~~~wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~ 271 (893)
|||+|++|++.|.+++ +..+. +|...+++
T Consensus 226 ~ff~Ls~~~~~L~~~~-~~~~~~~~p~~~~~~------------------------------------------------ 256 (616)
T PLN02224 226 YFFALSKYQKPLEDIL-AQNPRFVQPSYRLNE------------------------------------------------ 256 (616)
T ss_pred EEEEhHHHHHHHHHHH-HhCCCccCCHHHHHH------------------------------------------------
Confidence 9999999999999998 33221 12222222
Q ss_pred EEEECCCChHHHHHhhchHHHHHHHHHHhhcCccccccccccccccceEEEcCCCCCeeeEEEecccccCCCCCccccCC
Q psy2890 272 FCVISPEHPLAIFAARNNLLLQKFILEYKKNNNIESNNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAAIGVP 351 (893)
Q Consensus 272 ~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipv~~~~~V~~~~~GTG~~~~P 351 (893)
T Consensus 257 -------------------------------------------------------------------------------- 256 (616)
T PLN02224 257 -------------------------------------------------------------------------------- 256 (616)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCHHHHHHHHHcCCceeeeecCCCCCccccccccccccCCccccccCCCCCCCCHHHHHHHHHHHHHHcCCCCeeeEee
Q psy2890 352 AHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNKKNIFR 431 (893)
Q Consensus 352 ah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~~s~~~~gl~~~~a~~~i~~~L~~~~~~~~~~~~~ 431 (893)
+..+|++ .
T Consensus 257 --------------------------------------------------------------~~~~l~~----------g 264 (616)
T PLN02224 257 --------------------------------------------------------------VQSWIKS----------G 264 (616)
T ss_pred --------------------------------------------------------------HHHHHhc----------C
Confidence 2222221 2
Q ss_pred ecceeecccc-ccCCccCeEEcCCCCeeecCCCCCCccCCCccCCCCcccccccccccccCCCCccceecCCcccccccc
Q psy2890 432 LRDWAISRQR-YWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKENKKFLHVSCPKCNKLAFRETDTMDTFVDS 510 (893)
Q Consensus 432 l~DW~ISRQr-~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~g~~l~~~~~~~~~~c~~~g~~~~re~d~~D~WfdS 510 (893)
|+||||||.+ .||+|+|.. +..|++||||.
T Consensus 265 L~d~~ISR~~~~WGIpvP~~-------------------------------------------------~~~viYVWfDA 295 (616)
T PLN02224 265 LRDFSISRALVDWGIPVPDD-------------------------------------------------DKQTIYVWFDA 295 (616)
T ss_pred CCCccccCCCCCCceECCCC-------------------------------------------------CCcEEEEehhh
Confidence 8899999997 699999930 23589999999
Q ss_pred cchhhhh-cCCCccccCCChhhhhccCCceeeecchhhHHHHHHHHHHHHHHHHHhcCccCCCccceeeecceEeceeee
Q psy2890 511 SWYYMRY-ISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYY 589 (893)
Q Consensus 511 sw~~~~~-~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pfk~l~~~G~v~~~~~~ 589 (893)
.+.|+.. +.+..... . ...+.+|+|.|+|+.|+|.+.+|. .+|+.+|+..|+ .+++++++||++.
T Consensus 296 l~~Yls~~~~~~~~~~-~-~~~~~~~w~~~v~~iGKDii~fH~---i~wpa~l~~~g~----~~P~~i~~~g~l~----- 361 (616)
T PLN02224 296 LLGYISALTEDNKQQN-L-ETAVSFGWPASLHLIGKDILRFHA---VYWPAMLMSAGL----ELPKMVFGHGFLT----- 361 (616)
T ss_pred HHHHHHHhcccccccc-c-chhhccCCCcceEEEeecccccHH---HHHHHHHHHCCC----CCCcEEEecccEe-----
Confidence 8666553 33221100 0 112456789999999999999995 488999887764 6779999999986
Q ss_pred ecccCCCCccccCCCcccccccCCCCccceeeecCCCcceeccccccccCCCCccCccchhhhhCchhHHHHHHhcCCCC
Q psy2890 590 RIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPE 669 (893)
Q Consensus 590 ~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~~~~~~ 669 (893)
.+| +|||||+||+|+|.+++++||+|++||||++.+|..
T Consensus 362 ----~eG-------------------------------------~KMSKS~GN~i~p~e~l~~ygaD~~R~yLl~~~p~~ 400 (616)
T PLN02224 362 ----KDG-------------------------------------MKMGKSLGNTLEPFELVQKFGPDAVRYFFLREVEFG 400 (616)
T ss_pred ----cCC-------------------------------------ccccccCCccCCHHHHHHHcCcHHHHHHHHhcCCCc
Confidence 556 899999999999999999999999999999999999
Q ss_pred CCcccChhhhhHHH--HHHHHHHHHHHhhhhcccc-ccccccccCCccccCCChhHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy2890 670 KNLEWSDIGIEGAY--RFLNRVWNFSYILAPRIIN-IINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYN 746 (893)
Q Consensus 670 ~d~~~~~~~i~~~~--~~l~rl~n~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~ 746 (893)
+|.+|+++.+.... .+++.++|++.++...... .+... +........|.+++++++++++++.++|++|+|+
T Consensus 401 ~d~~fs~~~~~~~~NseLan~lgNll~R~l~~~~k~~~~~~-----~~~~~~~~~d~~l~~~l~~li~~v~~~me~~~~~ 475 (616)
T PLN02224 401 NDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCESTL-----VEDSTVAAEGVPLKDTVEKLVEKAQTNYENLSLS 475 (616)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC-----CCccccccccHHHHHHHHHHHHHHHHHHHhccHH
Confidence 99999999875543 3677777777665431110 00100 0111224557899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccccCC----CC-C----cccHHHHHHHHHHHHHHhcccccchHHHHHHHhhc
Q psy2890 747 TVVSGCMKIFNILERINSETKFDN----NK-N----TNNDILLYEGMSIFLRVLNPIAPHITHILWKELKY 808 (893)
Q Consensus 747 ~ai~~l~~fvn~l~~~~k~~~~~~----~~-~----~~~~~~l~~~l~~ll~LL~P~~P~isEEIwq~L~~ 808 (893)
+|+..+|+|++..|+|++...+|. ++ . .....+++++++.+++||+|||||+||+||+.|+.
T Consensus 476 ~Al~~i~el~~~~N~Yi~~~~PW~l~k~~~~~~~~~~~~l~~l~e~lr~~a~LLaPf~P~~Ae~I~~~Lg~ 546 (616)
T PLN02224 476 SACEAVLEIGNAGNTYMDQRAPWFLFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPCLSLRIYSQLGY 546 (616)
T ss_pred HHHHHHHHHHHHHHHHHHhCCchhhhccccccHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhCC
Confidence 999999999999999987655542 11 1 13455788999999999999999999999999985
No 32
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=1.5e-76 Score=698.33 Aligned_cols=455 Identities=24% Similarity=0.320 Sum_probs=382.3
Q ss_pred EEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q psy2890 38 FYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSS 117 (893)
Q Consensus 38 ~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 117 (893)
|+|++|||||||.|||||+++++.+|+++||+||+|++|++++|+|+||+||+.+|+++|++|.++++++.+.+++++++
T Consensus 1 ~~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~ 80 (530)
T TIGR00398 1 ILITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKW 80 (530)
T ss_pred CEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhc----------------------
Q psy2890 118 LGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVI---------------------- 175 (893)
Q Consensus 118 lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~---------------------- 175 (893)
|||++| .+.+|+++.|.+.++++|.+|+++|+||+++++|+||+.|+|+|++.++.
T Consensus 81 LgI~~D--~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~ce~cg~~ 158 (530)
T TIGR00398 81 LNISFD--RFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGRH 158 (530)
T ss_pred hCCCCC--CCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcCCCCCCCCcccccchhhhcccc
Confidence 999988 67889999999999999999999999999999999999999999998543
Q ss_pred -------cCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhh---CCCChHHHHHHHHhhcccccceeeeeccccCCC
Q psy2890 176 -------NGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKK---LPYWPKKVRLMQVNWIGKSKGIFLAFPHNIKDP 245 (893)
Q Consensus 176 -------~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~---~~~~p~~~~~~~~~wi~~s~~~~i~f~~~~~~~ 245 (893)
+++|++||.++|+++++||||++++|++.|++++ +. ...||++++.+..+||.
T Consensus 159 ~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~l~---------------- 221 (530)
T TIGR00398 159 LEPTELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWI-RKNPESGSPASNVKNKAQNWLK---------------- 221 (530)
T ss_pred CCHHHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHH-HhCCccCCCcHHHHHHHHHHHh----------------
Confidence 3346667789999999999999999999999998 43 22255554444444431
Q ss_pred CCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhchHHHHHHHHHHhhcCccccccccccccccceEEEcCC
Q psy2890 246 NKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYKKNNNIESNNLLKKSILTQLKVLHPL 325 (893)
Q Consensus 246 ~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~ 325 (893)
T Consensus 222 -------------------------------------------------------------------------------- 221 (530)
T TIGR00398 222 -------------------------------------------------------------------------------- 221 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeeeEEEecccccCCCCCccccCCCCCHHHHHHHHHcCCceeeeecCCCCCccccccccccccCCccccccCCCCCCC
Q psy2890 326 TNQEIKVFVVNYVIEKSYGRAAIGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNM 405 (893)
Q Consensus 326 ~~~~ipv~~~~~V~~~~~GTG~~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~~s~~~~gl 405 (893)
+
T Consensus 222 --------------------------------------------------~----------------------------- 222 (530)
T TIGR00398 222 --------------------------------------------------G----------------------------- 222 (530)
T ss_pred --------------------------------------------------C-----------------------------
Confidence 0
Q ss_pred CHHHHHHHHHHHHHHcCCCCeeeEeeecceeeccccc-cCCccCeEEcCCCCeeecCCCCCCccCCCccCCCCccccccc
Q psy2890 406 SHKEATNAISTDLIKLGLGNKKNIFRLRDWAISRQRY-WGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKENKK 484 (893)
Q Consensus 406 ~~~~a~~~i~~~L~~~~~~~~~~~~~l~DW~ISRQr~-WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~g~~l~~~~~ 484 (893)
.++|||||||++ ||+|||.|
T Consensus 223 -------------------------~l~d~~iSR~~~~WGipvP~~---------------------------------- 243 (530)
T TIGR00398 223 -------------------------GLKDLAITRDLVYWGIPVPND---------------------------------- 243 (530)
T ss_pred -------------------------CCCCccccCcCCCCCeeCCCC----------------------------------
Confidence 278999999999 99999963
Q ss_pred ccccccCCCCccceecCCcccccccccchhhh-hcCCCccccCCChhhhhccCCce-----eeecchhhHHHHHHHHHHH
Q psy2890 485 FLHVSCPKCNKLAFRETDTMDTFVDSSWYYMR-YISPKLENFMIDDNKINYWMPVD-----QYIGGIEHAILHLLYARFW 558 (893)
Q Consensus 485 ~~~~~c~~~g~~~~re~d~~D~WfdSsw~~~~-~~~p~~~~~~~~~~~~~~~~PvD-----~~igG~D~~i~Hl~y~rf~ 558 (893)
+.+|++||||+...|+. .+.+.. +.+.++.|+|.| +++.|+|++.+|. .||
T Consensus 244 ---------------~~~~~yvW~da~~~y~~~~~~~~~-----~~~~~~~~w~~~~~~~~v~~~G~Di~~~h~---~~~ 300 (530)
T TIGR00398 244 ---------------PNKVVYVWFDALIGYISSLGILSG-----DTEDWKKWWNNDEDAELIHFIGKDIVRFHT---IYW 300 (530)
T ss_pred ---------------CCcEEEEeecchHHhHhhhccccC-----ChhhHHHhCCCCCCceEEEEEecccchhHH---HHH
Confidence 12479999999743333 233321 124577899999 9999999998885 478
Q ss_pred HHHHHHhcCccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceecccccccc
Q psy2890 559 TKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSK 638 (893)
Q Consensus 559 ~~~l~~~g~~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSK 638 (893)
+.+|...|+ .||+++++||||+ .+| +||||
T Consensus 301 ~a~l~~~~~----~~~~~~~~~g~v~---------~~g-------------------------------------~KmSK 330 (530)
T TIGR00398 301 PAMLMGLGL----PLPTQVFSHGYLT---------VEG-------------------------------------GKMSK 330 (530)
T ss_pred HHHHHhCCC----CCCCEEEeeccEE---------ECC-------------------------------------ceecc
Confidence 888887774 6899999999998 235 89999
Q ss_pred CCCCccCccchhhhhCchhHHHHHHhcCCCCCCcccChhhhhHH--HHHHHHHHHHHHhhhhcccc-c-cccccccCCcc
Q psy2890 639 SKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGA--YRFLNRVWNFSYILAPRIIN-I-INLNIFHNDFS 714 (893)
Q Consensus 639 SkgN~i~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~--~~~l~rl~n~~~~~~~~~~~-~-~~~~~~~~~~~ 714 (893)
|+||+|+|.+++++||+|++|||+++.++.++|++|+++.++.. .+++++++|++.++...... . ..+ +.
T Consensus 331 S~Gn~i~~~d~i~~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~~~~~~~~~~~~------~~ 404 (530)
T TIGR00398 331 SLGNVVDPSDLLARFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTLGFIKKYFNGVL------PS 404 (530)
T ss_pred cCCceecHHHHHHHcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC------CC
Confidence 99999999999999999999999999888999999999999876 56789999988765431111 0 111 01
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccccCC---CC--CcccHHHHHHHHHHHHH
Q psy2890 715 VIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIFNILERINSETKFDN---NK--NTNNDILLYEGMSIFLR 789 (893)
Q Consensus 715 ~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fvn~l~~~~k~~~~~~---~~--~~~~~~~l~~~l~~ll~ 789 (893)
.......|+|++++++++.+.+.++|++|+|+.|++.+++|++..+.|+.....|. .+ ..+++.++.++++.+++
T Consensus 405 ~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~n~Yi~~~kpw~~~~~~~~~~~~~~~l~~~l~~l~~ 484 (530)
T TIGR00398 405 EDITDEEDKKLLKLINEALEQIDEAIESFEFRKALREIMKLADRGNKYIDENKPWELFKQSPRLKELLAVCSMLIRVLSI 484 (530)
T ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHhcCCChhhcCChHHHHHHHHHHHHHHHHHHH
Confidence 12235679999999999999999999999999999999999988888875543332 11 12567899999999999
Q ss_pred HhcccccchHHHHHHHhhc
Q psy2890 790 VLNPIAPHITHILWKELKY 808 (893)
Q Consensus 790 LL~P~~P~isEEIwq~L~~ 808 (893)
+|+|||||+|||||+.|+.
T Consensus 485 ll~P~~P~~ae~i~~~L~~ 503 (530)
T TIGR00398 485 LLYPIMPKLSEKILKFLNF 503 (530)
T ss_pred HHhCcccHHHHHHHHHhCC
Confidence 9999999999999999985
No 33
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=2.4e-77 Score=673.03 Aligned_cols=362 Identities=30% Similarity=0.516 Sum_probs=303.0
Q ss_pred CcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHc---------CCC-------
Q psy2890 36 GKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILN---------NTS------- 99 (893)
Q Consensus 36 ~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~---------g~~------- 99 (893)
++|+|++|||||||.|||||+++++++|+++||+||+|++|++++|||+||+|||.+|+++ +++
T Consensus 1 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~ 80 (382)
T cd00817 1 PVFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEK 80 (382)
T ss_pred CcEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999765 344
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcc
Q psy2890 100 PAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRG 179 (893)
Q Consensus 100 ~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c 179 (893)
|+++++++++.+++++++||+++||++++.|++|.|.+.++++|.+|+++|+||++.++|+|||.|+|+||+.|| |
T Consensus 81 ~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~ev----c 156 (382)
T cd00817 81 CWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEV----C 156 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchh----c
Confidence 457999999999999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred cCCCcccEEEeeceeeEEecchHHHHHHHHHhhCC--CChHHHHHHHHhhcccccceeeeeccccCCCCCCccccCCcEE
Q psy2890 180 WRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLP--YWPKKVRLMQVNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKL 257 (893)
Q Consensus 180 ~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~--~~p~~~~~~~~~wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l 257 (893)
++||.+++.+.++||||+|++|++.|++++ +..+ -||+++++.
T Consensus 157 ~~cg~~~~~~~~~qwf~~l~~~~~~l~~~~-~~~~~~~~P~~~~~~---------------------------------- 201 (382)
T cd00817 157 SRSGDVIEPLLKPQWFVKVKDLAKKALEAV-KEGDIKFVPERMEKR---------------------------------- 201 (382)
T ss_pred ccCCCeEEEEecCeeEEehHHHHHHHHHHH-hcCCcEEEChHHHHH----------------------------------
Confidence 999999999999999999999999999888 3211 123333222
Q ss_pred EEEeccccccccccEEEECCCChHHHHHhhchHHHHHHHHHHhhcCccccccccccccccceEEEcCCCCCeeeEEEecc
Q psy2890 258 WIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYKKNNNIESNNLLKKSILTQLKVLHPLTNQEIKVFVVNY 337 (893)
Q Consensus 258 ~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipv~~~~~ 337 (893)
T Consensus 202 -------------------------------------------------------------------------------- 201 (382)
T cd00817 202 -------------------------------------------------------------------------------- 201 (382)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCccccCCCCCHHHHHHHHHcCCceeeeecCCCCCccccccccccccCCccccccCCCCCCCCHHHHHHHHHHH
Q psy2890 338 VIEKSYGRAAIGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAISTD 417 (893)
Q Consensus 338 V~~~~~GTG~~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~~s~~~~gl~~~~a~~~i~~~ 417 (893)
+..+
T Consensus 202 ----------------------------------------------------------------------------~~~~ 205 (382)
T cd00817 202 ----------------------------------------------------------------------------YENW 205 (382)
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 2222
Q ss_pred HHHcCCCCeeeEeeecceeeccccccCCccCeEEcCCCCeeecCCC-CCCccCCCccCCCCcccccccccccccCCCCcc
Q psy2890 418 LIKLGLGNKKNIFRLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEK-DLPVILPETCVPNNLLKENKKFLHVSCPKCNKL 496 (893)
Q Consensus 418 L~~~~~~~~~~~~~l~DW~ISRQr~WG~pIPi~~~~~~~~v~v~~~-~lpv~lp~~~~~g~~l~~~~~~~~~~c~~~g~~ 496 (893)
|+ +++||||||||+||+|||+|+|++|+.+.+... ++++... . ....|++++..
T Consensus 206 l~-----------~l~Dw~ISR~~~WGipvP~~~~~~~~~~~~~~~~~~~~~~~------------~--~~~~~~~~~~~ 260 (382)
T cd00817 206 LE-----------NIRDWCISRQLWWGHRIPAWYCKDGGHWVVAREEDEAIDKA------------A--PEACVPCGGEE 260 (382)
T ss_pred Hh-----------hCccceeeeccccCCccceEEeCCCCcEEecchhHHHHHHh------------c--cccccCCCccC
Confidence 22 278999999999999999999999887765432 2221110 0 11345434557
Q ss_pred ceecCCccccccccc-chhhhhcCCCccccCCChhhhhccCCceeeecchhhHHHHHHHHHHHHHHHHHhcCccCCCccc
Q psy2890 497 AFRETDTMDTFVDSS-WYYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFI 575 (893)
Q Consensus 497 ~~re~d~~D~WfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pfk 575 (893)
++|+++||||||||+ +|++..++|.+ ++++++|+|+|+|++|+|+..+|..+ .++... .+.+..||+
T Consensus 261 ~~~~~~v~dvWfds~~~~~~~~~~~~~------~~~~~~~~p~d~~~~G~D~~~~h~~~-----~l~~~~-~~~g~~p~~ 328 (382)
T cd00817 261 LKQDEDVLDTWFSSSLWPFSTLGWPEE------TKDLKKFYPTSLLVTGHDIIFFWVAR-----MIMRGL-KLTGKLPFK 328 (382)
T ss_pred eeECCceeeeeecCCCcHHHHhCCCCc------chhHhhcCCCCeeeeecCcCchHHHH-----HHHHHH-HhhCCCchH
Confidence 999999999999997 68777777753 34588999999999999997766433 112222 234557899
Q ss_pred eeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceeccccccccCCCCccCccchhhhhCc
Q psy2890 576 RLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGA 655 (893)
Q Consensus 576 ~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yGa 655 (893)
++++||||+ | .+| +|||||+||+|+|++++++||+
T Consensus 329 ~v~~hg~v~-------~-~~g-------------------------------------~KMSKS~Gn~v~~~dll~~~g~ 363 (382)
T cd00817 329 EVYLHGLVR-------D-EDG-------------------------------------RKMSKSLGNVIDPLDVIDGYGA 363 (382)
T ss_pred HeEeeeeEE-------C-CCC-------------------------------------CCccccCCCCCCHHHHHHhcCc
Confidence 999999998 3 455 8999999999999999999999
Q ss_pred hhHHHHHHhcCCCCCCccc
Q psy2890 656 DSTRLFIIFSAPPEKNLEW 674 (893)
Q Consensus 656 D~lRl~ll~~~~~~~d~~~ 674 (893)
|++|+|+++.+++++|.+|
T Consensus 364 Da~R~~ll~~~~~~~D~~f 382 (382)
T cd00817 364 DALRFTLASAATQGRDINL 382 (382)
T ss_pred HHHHHHHHhCCCccCCCCC
Confidence 9999999999999999876
No 34
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.1e-75 Score=703.84 Aligned_cols=456 Identities=20% Similarity=0.281 Sum_probs=383.7
Q ss_pred CcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy2890 36 GKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQL 115 (893)
Q Consensus 36 ~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l 115 (893)
++|+|++|||||||.+||||+++++++|+++||+||+|++|++++|+|+||+||+.+|+++|++|.++++++++.+++++
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~ 81 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDF 81 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhc--------------------
Q psy2890 116 SSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVI-------------------- 175 (893)
Q Consensus 116 ~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~-------------------- 175 (893)
++|||++| .+++|+++.|.+.++++|.+|+++|+||++.++|+||+.|+++|++.++.
T Consensus 82 ~~l~i~~d--~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~C~~~d~~g~~ce~cg 159 (673)
T PRK00133 82 AGFGISFD--NYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCG 159 (673)
T ss_pred HHhCCCCC--CCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchheecccCCCCCcccCCchhhhcc
Confidence 99999998 68999999999999999999999999999999999999999999987764
Q ss_pred ---------cCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHHHHhhcccccceeeeeccccCCCC
Q psy2890 176 ---------NGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIGKSKGIFLAFPHNIKDPN 246 (893)
Q Consensus 176 ---------~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~wi~~s~~~~i~f~~~~~~~~ 246 (893)
+++|.+||.++|.++++||||++++|++.|.+++ ++.+.||+++++...+||.
T Consensus 160 ~~~~~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~----------------- 221 (673)
T PRK00133 160 ATYSPTELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWI-TRSGELQPNVANKMKEWLE----------------- 221 (673)
T ss_pred ccCChHhhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHh-----------------
Confidence 3456667778999999999999999999999999 5545588777776666652
Q ss_pred CCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhchHHHHHHHHHHhhcCccccccccccccccceEEEcCCC
Q psy2890 247 KNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYKKNNNIESNNLLKKSILTQLKVLHPLT 326 (893)
Q Consensus 247 ~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~ 326 (893)
T Consensus 222 -------------------------------------------------------------------------------- 221 (673)
T PRK00133 222 -------------------------------------------------------------------------------- 221 (673)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeeeEEEecccccCCCCCccccCCCCCHHHHHHHHHcCCceeeeecCCCCCccccccccccccCCccccccCCCCCCCC
Q psy2890 327 NQEIKVFVVNYVIEKSYGRAAIGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMS 406 (893)
Q Consensus 327 ~~~ipv~~~~~V~~~~~GTG~~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~~s~~~~gl~ 406 (893)
+
T Consensus 222 -------------------------------------------------~------------------------------ 222 (673)
T PRK00133 222 -------------------------------------------------E------------------------------ 222 (673)
T ss_pred -------------------------------------------------C------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHcCCCCeeeEeeecceeecccccc-CCccCeEEcCCCCeeecCCCCCCccCCCccCCCCcccccccc
Q psy2890 407 HKEATNAISTDLIKLGLGNKKNIFRLRDWAISRQRYW-GTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKENKKF 485 (893)
Q Consensus 407 ~~~a~~~i~~~L~~~~~~~~~~~~~l~DW~ISRQr~W-G~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~g~~l~~~~~~ 485 (893)
.++|||||||+.| |+|+|- +
T Consensus 223 ------------------------~l~d~~ISR~~~W~GipvP~----~------------------------------- 243 (673)
T PRK00133 223 ------------------------GLQDWDISRDAPYFGFEIPG----A------------------------------- 243 (673)
T ss_pred ------------------------CCcccceeeeCCccceECCC----C-------------------------------
Confidence 2779999999999 999992 0
Q ss_pred cccccCCCCccceecCCcccccccccchhhhhc--CCCccccCCChhhhhccCCce-----eeecchhhHHHHHHHHHHH
Q psy2890 486 LHVSCPKCNKLAFRETDTMDTFVDSSWYYMRYI--SPKLENFMIDDNKINYWMPVD-----QYIGGIEHAILHLLYARFW 558 (893)
Q Consensus 486 ~~~~c~~~g~~~~re~d~~D~WfdSsw~~~~~~--~p~~~~~~~~~~~~~~~~PvD-----~~igG~D~~i~Hl~y~rf~ 558 (893)
+..|++||||+.+.|+... ++... +.+.++.|+|.+ +|+.|+|.+.+| +.||
T Consensus 244 --------------~~~~iyVW~dal~~Yl~~~~~~~~~~----~~~~~~~~w~~~~~~~~v~~iGkDi~~fH---~i~w 302 (673)
T PRK00133 244 --------------PGKVFYVWLDAPIGYISSTKNLCDKR----GGLDWDEYWKKDSDTELYHFIGKDIIYFH---TLFW 302 (673)
T ss_pred --------------CCeEEEEcccchhhhhHHHhhhcccc----cchhHHHhcCCCCCceEEEEEeecchhHH---HHHH
Confidence 2358999999986554432 22210 123467777322 899999999988 5589
Q ss_pred HHHHHHhcCccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceecccccccc
Q psy2890 559 TKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSK 638 (893)
Q Consensus 559 ~~~l~~~g~~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSK 638 (893)
+.+|+..|+ .+++++++||||+ .+| +||||
T Consensus 303 pa~l~a~g~----~lP~~v~~hg~v~---------~~G-------------------------------------~KMSK 332 (673)
T PRK00133 303 PAMLEGAGY----RLPTNVFAHGFLT---------VEG-------------------------------------AKMSK 332 (673)
T ss_pred HHHHHhCCC----CCCCEEeeeccEE---------ecC-------------------------------------Ccccc
Confidence 999988775 5669999999998 445 89999
Q ss_pred CCCCccCccchhhhhCchhHHHHHHhcCCCC-CCcccChhhhhH--HHHHHHHHHHHHHhhhhccccccccccccCCccc
Q psy2890 639 SKNNGIDPQTQINTYGADSTRLFIIFSAPPE-KNLEWSDIGIEG--AYRFLNRVWNFSYILAPRIINIINLNIFHNDFSV 715 (893)
Q Consensus 639 SkgN~i~p~~ii~~yGaD~lRl~ll~~~~~~-~d~~~~~~~i~~--~~~~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~ 715 (893)
|+||+|+|.++|++||+|++|||+|+.++.+ +|.+|+++.+.. ..+++++++|++.++.. +.. ..+. ..
T Consensus 333 S~GNvV~p~dlie~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~~R~~~-~~~-k~~~------~~ 404 (673)
T PRK00133 333 SRGTFIWARTYLDHLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFASRTAG-FIN-KRFD------GK 404 (673)
T ss_pred cCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HhcC------CC
Confidence 9999999999999999999999999999999 999999998754 45678999998887654 211 1110 01
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccccCCC---CC---cccHHHHHHHHHHHHH
Q psy2890 716 IKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIFNILERINSETKFDNN---KN---TNNDILLYEGMSIFLR 789 (893)
Q Consensus 716 ~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fvn~l~~~~k~~~~~~~---~~---~~~~~~l~~~l~~ll~ 789 (893)
......|+|++++++++++++.++|++|+|+.|++.+++|++..|+|+.....|.. +. ..+..++.++++.+++
T Consensus 405 ~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~~~~N~yi~~~kpw~~~~~~~~~~~~~l~~~~~~l~~l~~ 484 (673)
T PRK00133 405 LPDALADPELLEEFEAAAEKIAEAYEAREFRKALREIMALADFANKYVDDNEPWKLAKQDGERLQAVCSVGLNLFRALAI 484 (673)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 11345699999999999999999999999999999999999888888765444421 11 1345567788899999
Q ss_pred HhcccccchHHHHHHHhhc
Q psy2890 790 VLNPIAPHITHILWKELKY 808 (893)
Q Consensus 790 LL~P~~P~isEEIwq~L~~ 808 (893)
||+|||||+||+||++|+.
T Consensus 485 lL~Pf~P~~ae~i~~~Lg~ 503 (673)
T PRK00133 485 YLKPVLPELAERAEAFLNL 503 (673)
T ss_pred HhhChhchHHHHHHHHhCC
Confidence 9999999999999999985
No 35
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=5.3e-75 Score=698.30 Aligned_cols=463 Identities=17% Similarity=0.248 Sum_probs=379.6
Q ss_pred CCCcEEEEecCCCCCCcCcchHHHh-HHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy2890 34 PNGKFYTCSMLPYPSGKLHMGHVRN-YTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMK 112 (893)
Q Consensus 34 ~~~~~~i~~~~P~~nG~lHiGH~~~-~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~ 112 (893)
++++||||+|+|||||.|||||+++ ++.+|+++||+||+|++|+|++|+|+||+||+.+|+++|.+|+++++++++.++
T Consensus 15 ~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~ 94 (801)
T PLN02610 15 GKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHK 94 (801)
T ss_pred CCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3678999999999999999999997 788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccC-----------
Q psy2890 113 KQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWR----------- 181 (893)
Q Consensus 113 ~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~----------- 181 (893)
+++++|||++| ++++|+++.|.+.||++|.+|+++|+||++.+.++||+.|+++|++..| .|.||.
T Consensus 95 ~~~~~l~i~~D--~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v-~G~CP~~~C~~~~a~Gd 171 (801)
T PLN02610 95 EVYDWFDISFD--KFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLV-EGTCPTEGCNYDSARGD 171 (801)
T ss_pred HHHHHcCCccc--cCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHh-cCcCCccccCccccccc
Confidence 99999999998 9999999999999999999999999999999999999999999999755 455554
Q ss_pred ---------------------CCcccEEEeeceeeEEecchHHHHHHHHHhh--CCCChHHHHHHHHhhcccccceeeee
Q psy2890 182 ---------------------SDAIIEKKKIPMYYAKITNYAEELLEYVKKK--LPYWPKKVRLMQVNWIGKSKGIFLAF 238 (893)
Q Consensus 182 ---------------------~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~--~~~~p~~~~~~~~~wi~~s~~~~i~f 238 (893)
||.+++.++++||||+|++|++.|.++++++ .+.|+.++..++++||.
T Consensus 172 ~Ce~Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~--------- 242 (801)
T PLN02610 172 QCEKCGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWLR--------- 242 (801)
T ss_pred hhhhccccCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHh---------
Confidence 6789999999999999999999999999321 23355554444433331
Q ss_pred ccccCCCCCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhchHHHHHHHHHHhhcCccccccccccccccc
Q psy2890 239 PHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYKKNNNIESNNLLKKSILTQ 318 (893)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 318 (893)
T Consensus 243 -------------------------------------------------------------------------------- 242 (801)
T PLN02610 243 -------------------------------------------------------------------------------- 242 (801)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEcCCCCCeeeEEEecccccCCCCCccccCCCCCHHHHHHHHHcCCceeeeecCCCCCccccccccccccCCcccccc
Q psy2890 319 LKVLHPLTNQEIKVFVVNYVIEKSYGRAAIGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCIN 398 (893)
Q Consensus 319 ~~~~~P~~~~~ipv~~~~~V~~~~~GTG~~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~~ 398 (893)
+
T Consensus 243 ---------------------------------------------------------~---------------------- 243 (801)
T PLN02610 243 ---------------------------------------------------------D---------------------- 243 (801)
T ss_pred ---------------------------------------------------------C----------------------
Confidence 0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCCCeeeEeeecceeeccccccCCccCeEEcCCCCeeecCCCCCCccCCCccCCCCc
Q psy2890 399 SCKYNNMSHKEATNAISTDLIKLGLGNKKNIFRLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNL 478 (893)
Q Consensus 399 s~~~~gl~~~~a~~~i~~~L~~~~~~~~~~~~~l~DW~ISRQr~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~g~~ 478 (893)
.|+||||||...||+|+|. ++
T Consensus 244 --------------------------------gL~d~~IsR~~~WGipvP~----~~----------------------- 264 (801)
T PLN02610 244 --------------------------------GLKPRCITRDLKWGVPVPL----EK----------------------- 264 (801)
T ss_pred --------------------------------CCCCcceeeecCCcccCCC----CC-----------------------
Confidence 2789999999999999995 10
Q ss_pred ccccccccccccCCCCccceecCCcccccccccchhhhhcCCCccccCCChhhhhccCCc--e---eeecchhhHHHHHH
Q psy2890 479 LKENKKFLHVSCPKCNKLAFRETDTMDTFVDSSWYYMRYISPKLENFMIDDNKINYWMPV--D---QYIGGIEHAILHLL 553 (893)
Q Consensus 479 l~~~~~~~~~~c~~~g~~~~re~d~~D~WfdSsw~~~~~~~p~~~~~~~~~~~~~~~~Pv--D---~~igG~D~~i~Hl~ 553 (893)
-+..|++||||....|+..+... . +.++.|+|. | +|+-|+|.+.+|.
T Consensus 265 --------------------~~~~v~YVWfDAl~~Yis~~~~~------~-~~~~~~W~~~~~~~~~hfiGKDi~~fH~- 316 (801)
T PLN02610 265 --------------------YKDKVFYVWFDAPIGYVSITACY------T-PEWEKWWKNPENVELYQFMGKDNVPFHT- 316 (801)
T ss_pred --------------------CCCcEEEEehhhHHHHHHHHhhh------h-hHHHHhcCCcccceEEEEEeeecchhHH-
Confidence 02358999999987666543111 1 135667754 6 7999999999994
Q ss_pred HHHHHHHHHHHhcCccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceeccc
Q psy2890 554 YARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGI 633 (893)
Q Consensus 554 y~rf~~~~l~~~g~~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~ 633 (893)
.||+.+|+..|. .-.++++|++||+++ .+|
T Consensus 317 --i~wPa~L~a~g~--~~~~p~~i~~~g~l~---------~eG------------------------------------- 346 (801)
T PLN02610 317 --VMFPSTLLGTGE--NWTMMKTISVTEYLN---------YEG------------------------------------- 346 (801)
T ss_pred --HHHHHHHHhCCC--CcCCCCEEEeccCEe---------cCC-------------------------------------
Confidence 589999988774 113678999999997 555
Q ss_pred cccccCCCCccCccchhhh-hCchhHHHHHHhcCCCCCCcccChhhhhHHHH--HHHHHHHHHHhhhhcccc-----c-c
Q psy2890 634 EKMSKSKNNGIDPQTQINT-YGADSTRLFIIFSAPPEKNLEWSDIGIEGAYR--FLNRVWNFSYILAPRIIN-----I-I 704 (893)
Q Consensus 634 ~KMSKSkgN~i~p~~ii~~-yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~~~--~l~rl~n~~~~~~~~~~~-----~-~ 704 (893)
+|||||+||+|+|.++++. ||+|++||||+..++.++|.+|+++.+....| +++.+.|++.+....... . .
T Consensus 347 ~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n~lGNlv~R~~~~i~~~~~k~~~g 426 (801)
T PLN02610 347 GKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFINRVLSFIAKPPGAGYGS 426 (801)
T ss_pred ceecCcCCcccCHHHHHhccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Confidence 8999999999999999996 99999999999999999999999998876543 466666666555431110 0 1
Q ss_pred ccccccCCccccCCChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccccCCC---CCc---ccHH
Q psy2890 705 NLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIFNILERINSETKFDNN---KNT---NNDI 778 (893)
Q Consensus 705 ~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fvn~l~~~~k~~~~~~~---~~~---~~~~ 778 (893)
.+. ..........|+|++++++++++++.++|++|+|+.|++.+|+|++..|+|+....+|.- +.. ....
T Consensus 427 ~vp----~~~~~~~~~~d~~Ll~~~~~~i~~v~~~me~~~~~~Al~~I~~l~~~~NkYIe~~kPW~L~k~d~~~l~~vl~ 502 (801)
T PLN02610 427 VIP----DAPGAESHPLTKKLAEKVGKLVEQYVEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWKLYKEDKPSCAIVVK 502 (801)
T ss_pred cCC----CccccccchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCchhhhCCCHHHHHHHHH
Confidence 110 000112345689999999999999999999999999999999999999999877666532 111 2455
Q ss_pred HHHHHHHHHHHHhcccccchHHHHHHHhhc
Q psy2890 779 LLYEGMSIFLRVLNPIAPHITHILWKELKY 808 (893)
Q Consensus 779 ~l~~~l~~ll~LL~P~~P~isEEIwq~L~~ 808 (893)
++.++++.+++||+||||++||+||++|+-
T Consensus 503 ~~le~lr~la~LL~PfmP~~aeeI~~~Lg~ 532 (801)
T PLN02610 503 TSVGLVYLLACLLEPFMPSFSKEVLKQLNL 532 (801)
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHhCC
Confidence 666799999999999999999999999984
No 36
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6e-75 Score=683.97 Aligned_cols=461 Identities=21% Similarity=0.310 Sum_probs=377.5
Q ss_pred CcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy2890 36 GKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQL 115 (893)
Q Consensus 36 ~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l 115 (893)
++|+|++|||||||.+||||+++++++|+++||+||+|++|.+++|+|+||+||+.+|+++|.++.++++.+++.++++|
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 80 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLW 80 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccC--cccCCCcccEEEeece
Q psy2890 116 SSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVING--RGWRSDAIIEKKKIPM 193 (893)
Q Consensus 116 ~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g--~c~~~~~~v~~~~~~~ 193 (893)
++|||.+| .+++|+++.|.+.++++|.+|+++|+||++.++|+||+.|+++|++.+++++ .|++||.++++++++|
T Consensus 81 ~~l~I~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~~p~~~~~~~~~~~~~~~~ 158 (511)
T PRK11893 81 EALNISYD--DFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIEDGYRCPPTGAPVEWVEEES 158 (511)
T ss_pred HHhCCCcC--CceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcCCCCCCCCCCCcceEEecCe
Confidence 99999988 7889999999999999999999999999999999999999999999999885 5999999999999999
Q ss_pred eeEEecchHHHHHHHHHhhCCC--ChHHHHHHHHhhcccccceeeeeccccCCCCCCccccCCcEEEEEecccccccccc
Q psy2890 194 YYAKITNYAEELLEYVKKKLPY--WPKKVRLMQVNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGIT 271 (893)
Q Consensus 194 ~~~~l~~~~~~l~~~~~~~~~~--~p~~~~~~~~~wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~ 271 (893)
|||++++|++.|.+++ +..+. ||+..++..
T Consensus 159 ~f~~l~~~~~~l~~~~-~~~~~~~~p~~~~~~~----------------------------------------------- 190 (511)
T PRK11893 159 YFFRLSKYQDKLLELY-EANPDFIQPASRRNEV----------------------------------------------- 190 (511)
T ss_pred EEEEcHHHHHHHHHHH-HhCCCccCCHHHHHHH-----------------------------------------------
Confidence 9999999999999887 32111 122211111
Q ss_pred EEEECCCChHHHHHhhchHHHHHHHHHHhhcCccccccccccccccceEEEcCCCCCeeeEEEecccccCCCCCccccCC
Q psy2890 272 FCVISPEHPLAIFAARNNLLLQKFILEYKKNNNIESNNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAAIGVP 351 (893)
Q Consensus 272 ~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipv~~~~~V~~~~~GTG~~~~P 351 (893)
T Consensus 191 -------------------------------------------------------------------------------- 190 (511)
T PRK11893 191 -------------------------------------------------------------------------------- 190 (511)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCHHHHHHHHHcCCceeeeecCCCCCccccccccccccCCccccccCCCCCCCCHHHHHHHHHHHHHHcCCCCeeeEee
Q psy2890 352 AHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNKKNIFR 431 (893)
Q Consensus 352 ah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~~s~~~~gl~~~~a~~~i~~~L~~~~~~~~~~~~~ 431 (893)
..+|++ +
T Consensus 191 ---------------------------------------------------------------~~~l~~----------~ 197 (511)
T PRK11893 191 ---------------------------------------------------------------ISFVKS----------G 197 (511)
T ss_pred ---------------------------------------------------------------HHHHHC----------C
Confidence 111111 3
Q ss_pred ecceeecc-ccccCCccCeEEcCCCCeeecCCCCCCccCCCccCCCCcccccccccccccCCCCccceecCCcccccccc
Q psy2890 432 LRDWAISR-QRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKENKKFLHVSCPKCNKLAFRETDTMDTFVDS 510 (893)
Q Consensus 432 l~DW~ISR-Qr~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~g~~l~~~~~~~~~~c~~~g~~~~re~d~~D~WfdS 510 (893)
++|||||| |++||+|||.. +.+++||||||
T Consensus 198 ~~D~~isR~~~~WGipiP~~-------------------------------------------------~~~~~~vWfda 228 (511)
T PRK11893 198 LKDLSISRTNFDWGIPVPGD-------------------------------------------------PKHVIYVWFDA 228 (511)
T ss_pred CCCcccCCCCCCCCccCCCC-------------------------------------------------CCceEEEEecC
Confidence 78999999 99999999951 12479999999
Q ss_pred cc-hhhhhcCCCccccCCChhhhhccCCceeeecchhhHHHHHHHHHHHHHHHHHhcCccCCCccceeeecceEeceeee
Q psy2890 511 SW-YYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYY 589 (893)
Q Consensus 511 sw-~~~~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pfk~l~~~G~v~~~~~~ 589 (893)
++ |++..+.|..+.. .++++.+|+|.|++++|+|+..+|.. +|+.++... ....| +.+++||||+
T Consensus 229 ~~~y~s~~~~p~~~~~--~~~~~~~~~~~D~~~~G~D~~~~h~~---~~~a~~~a~---~~~~p-~~~~~~g~v~----- 294 (511)
T PRK11893 229 LTNYLTALGYPDDEEL--LAELFNKYWPADVHLIGKDILRFHAV---YWPAFLMAA---GLPLP-KRVFAHGFLT----- 294 (511)
T ss_pred cHHHHhHhcccccccc--chhHHHhcCCCcceEecccccccchh---HHHHHHHhC---CCCCC-CEEEeeccEE-----
Confidence 74 4444456653211 12357788999999999999988865 455555543 23556 9999999998
Q ss_pred ecccCCCCccccCCCcccccccCCCCccceeeecCCCcceeccccccccCCCCccCccchhhhhCchhHHHHHHhcCCCC
Q psy2890 590 RIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPE 669 (893)
Q Consensus 590 ~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~~~~~~ 669 (893)
.+| +|||||+||+|+|.+++++||+|++|||+++.++++
T Consensus 295 ----~~G-------------------------------------~KMSKS~GN~i~~~dll~~~g~DalR~~ll~~~~~~ 333 (511)
T PRK11893 295 ----LDG-------------------------------------EKMSKSLGNVIDPFDLVDEYGVDAVRYFLLREIPFG 333 (511)
T ss_pred ----ECC-------------------------------------eeecccCCcEEcHHHHHHHcCcHHHHHHHHhcCCCC
Confidence 445 899999999999999999999999999999998999
Q ss_pred CCcccChhhhhHHH--HHHHHHHHHHHhhhhcccc-ccccccccCCccccCCChhHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy2890 670 KNLEWSDIGIEGAY--RFLNRVWNFSYILAPRIIN-IINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYN 746 (893)
Q Consensus 670 ~d~~~~~~~i~~~~--~~l~rl~n~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~ 746 (893)
+|++|+++.+..+. .+.+.++|++..+...... ..... +....+...|+|++++++++.+.+.++|++|+|+
T Consensus 334 ~d~~Fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~-----~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~ 408 (511)
T PRK11893 334 QDGDFSREAFINRINADLANDLGNLAQRTLSMIAKNFDGKV-----PEPGALTEADEALLEAAAALLERVRAAMDNLAFD 408 (511)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----CCCcccchhhHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 99999999997653 3556666666544321110 01110 0112346778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCC---CC---cccHHHHHHHHHHHHHHhcccccchHHHHHHHhhc
Q psy2890 747 TVVSGCMKIFNILERINSETKFDNN---KN---TNNDILLYEGMSIFLRVLNPIAPHITHILWKELKY 808 (893)
Q Consensus 747 ~ai~~l~~fvn~l~~~~k~~~~~~~---~~---~~~~~~l~~~l~~ll~LL~P~~P~isEEIwq~L~~ 808 (893)
.|++.+++|++.++.|+.....|.. +. ..+..+++++++.+++||+|||||+||+||+.|+.
T Consensus 409 ~a~~~l~~l~~~~n~y~~~~~pw~~~~~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~L~~ 476 (511)
T PRK11893 409 KALEAILALVRAANKYIDEQAPWSLAKTDPERLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLGV 476 (511)
T ss_pred HHHHHHHHHHHHHHHHHhhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHhCC
Confidence 9999999999999888755433321 11 24567888999999999999999999999999985
No 37
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-73 Score=652.20 Aligned_cols=459 Identities=22% Similarity=0.354 Sum_probs=383.1
Q ss_pred CCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy2890 35 NGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQ 114 (893)
Q Consensus 35 ~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~ 114 (893)
.++|+||+|+|||||.|||||+++++.+||++||+||+|++|+|++|+|+||+||+.+|+++|++|+++++++++.+++.
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~ 83 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKEL 83 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCC-----------
Q psy2890 115 LSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSD----------- 183 (893)
Q Consensus 115 l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~----------- 183 (893)
++.|+|++| .|.+|+++.|.+.+|++|.+|+++|+||.+..+++||++|+++|+|.+|+ |.|+.||
T Consensus 84 ~~~l~IsfD--~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~-g~cp~cg~~~arGD~Ce~ 160 (558)
T COG0143 84 FKALNISFD--NFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVE-GTCPKCGGEDARGDQCEN 160 (558)
T ss_pred HHHhCCccc--ccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchhee-ccCCCcCccccCcchhhh
Confidence 999999999 99999999999999999999999999999999999999999999996654 5555444
Q ss_pred -------------------cccEEEeeceeeEEecchHHHHHHHHHhhCC--CChHHHHHHHHhhcccccceeeeecccc
Q psy2890 184 -------------------AIIEKKKIPMYYAKITNYAEELLEYVKKKLP--YWPKKVRLMQVNWIGKSKGIFLAFPHNI 242 (893)
Q Consensus 184 -------------------~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~--~~p~~~~~~~~~wi~~s~~~~i~f~~~~ 242 (893)
+.+|.|++++|||+|++|++.|++++ +..+ .||.+++++..+||.
T Consensus 161 Cg~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~-~~~~~~~~p~~~~ne~~~~i~------------- 226 (558)
T COG0143 161 CGRTLDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWY-ESNPDFIWPANRRNEVLNFLK------------- 226 (558)
T ss_pred ccCcCCchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHH-HhCccccCChHHHHHHHHHHH-------------
Confidence 45566669999999999999999999 5443 266666665554442
Q ss_pred CCCCCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhchHHHHHHHHHHhhcCccccccccccccccceEEE
Q psy2890 243 KDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYKKNNNIESNNLLKKSILTQLKVL 322 (893)
Q Consensus 243 ~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 322 (893)
T Consensus 227 -------------------------------------------------------------------------------- 226 (558)
T COG0143 227 -------------------------------------------------------------------------------- 226 (558)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCeeeEEEecccccCCCCCccccCCCCCHHHHHHHHHcCCceeeeecCCCCCccccccccccccCCccccccCCCC
Q psy2890 323 HPLTNQEIKVFVVNYVIEKSYGRAAIGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKY 402 (893)
Q Consensus 323 ~P~~~~~ipv~~~~~V~~~~~GTG~~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~~s~~~ 402 (893)
.
T Consensus 227 -----------------------------------------------------~-------------------------- 227 (558)
T COG0143 227 -----------------------------------------------------E-------------------------- 227 (558)
T ss_pred -----------------------------------------------------c--------------------------
Confidence 1
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCeeeEeeecceeecc-ccccCCccCeEEcCCCCeeecCCCCCCccCCCccCCCCcccc
Q psy2890 403 NNMSHKEATNAISTDLIKLGLGNKKNIFRLRDWAISR-QRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKE 481 (893)
Q Consensus 403 ~gl~~~~a~~~i~~~L~~~~~~~~~~~~~l~DW~ISR-Qr~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~g~~l~~ 481 (893)
-|+||+||| .-.||+|+|- +
T Consensus 228 ----------------------------GL~d~~IsR~~~~WGipvP~----~--------------------------- 248 (558)
T COG0143 228 ----------------------------GLKDLSITRTDLDWGIPVPG----D--------------------------- 248 (558)
T ss_pred ----------------------------cCcccceecCCCCCCccCCC----C---------------------------
Confidence 178999999 8899999992 1
Q ss_pred cccccccccCCCCccceecCCcccccccccchhhhh-cCCCccccCCChhhhhccCCce----eeecchhhHHHHHHHHH
Q psy2890 482 NKKFLHVSCPKCNKLAFRETDTMDTFVDSSWYYMRY-ISPKLENFMIDDNKINYWMPVD----QYIGGIEHAILHLLYAR 556 (893)
Q Consensus 482 ~~~~~~~~c~~~g~~~~re~d~~D~WfdSsw~~~~~-~~p~~~~~~~~~~~~~~~~PvD----~~igG~D~~i~Hl~y~r 556 (893)
+..|++||||....|+.. +.... .-+.+.++.|+|.| +|+-|+|.+.+| +.
T Consensus 249 ------------------p~kv~YVWfDAligYisa~~~~~~---~~~~~~~~~~W~~~~~e~vhfIGKDii~FH---av 304 (558)
T COG0143 249 ------------------PGKVIYVWFDALIGYISALGELAE---IGDDEDFKKFWPADDTELVHFIGKDIIRFH---AV 304 (558)
T ss_pred ------------------CCCEEEEeeccHHHHHHHhcchhc---cCChHHHHhhCCCCCceEEEEeccccCcch---hh
Confidence 234899999997655543 22210 01345689999999 999999999999 55
Q ss_pred HHHHHHHHhcCccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceecccccc
Q psy2890 557 FWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKM 636 (893)
Q Consensus 557 f~~~~l~~~g~~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KM 636 (893)
||+.+|+..|+ ..+++|++||+++ .+| +||
T Consensus 305 ~wPamL~~~~~----~lP~~i~ahg~l~---------~~G-------------------------------------~Km 334 (558)
T COG0143 305 YWPAMLMAAGL----PLPTRIFAHGFLT---------LEG-------------------------------------QKM 334 (558)
T ss_pred HHHHHHHhCCC----CCCCEEEeeeeEE---------ECC-------------------------------------ccc
Confidence 89999998886 4889999999998 555 799
Q ss_pred ccCCCCccCccchhhhhCchhHHHHHHhcCCCCCCcccChhhhhHHHH--HHHHHHHHHHhhhhccc-c-ccccccccCC
Q psy2890 637 SKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYR--FLNRVWNFSYILAPRII-N-IINLNIFHND 712 (893)
Q Consensus 637 SKSkgN~i~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~~~--~l~rl~n~~~~~~~~~~-~-~~~~~~~~~~ 712 (893)
|||+||+|+|.++++.||+|++||||+...|.++|.+|+.+.+....| +.+++-|++........ . .+.+.
T Consensus 335 SKSrG~~V~~~~~~~~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~~~fi~k~~~g~vp----- 409 (558)
T COG0143 335 SKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFINKYFDGVVP----- 409 (558)
T ss_pred cccCCcEEeHHHHHHHcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCC-----
Confidence 999999999999999999999999999999999999999999877532 44555555544433000 0 01120
Q ss_pred ccc-cCCChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccccCCCC----Cc---ccHHHHHHHH
Q psy2890 713 FSV-IKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIFNILERINSETKFDNNK----NT---NNDILLYEGM 784 (893)
Q Consensus 713 ~~~-~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fvn~l~~~~k~~~~~~~~----~~---~~~~~l~~~l 784 (893)
.. ....+.|+.++.+...+...+.++|+.++|++|+..+|+++...|+|+++..+|.-. .+ +....+.+++
T Consensus 410 -~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~~~~N~Yi~~~~PW~l~k~~~~~~~~~vl~~~~~~~ 488 (558)
T COG0143 410 -AAGAPDLEEDEELLALAREALEAVAEAMEKYEFRKALEEIMALASRANKYIDEQAPWKLAKEDKRERLATVLYLALELV 488 (558)
T ss_pred -ccccccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcCCCchhhccCcHHHHHHHHHHHHHHH
Confidence 11 111267899999999999999999999999999999999999999999877666321 11 3456677889
Q ss_pred HHHHHHhcccccchHHHHHHHhhc
Q psy2890 785 SIFLRVLNPIAPHITHILWKELKY 808 (893)
Q Consensus 785 ~~ll~LL~P~~P~isEEIwq~L~~ 808 (893)
+.++.||+||||..|++||++|+.
T Consensus 489 r~la~ll~P~mP~~a~ki~~~L~~ 512 (558)
T COG0143 489 RVLAILLYPFMPETAEKIWDQLGL 512 (558)
T ss_pred HHHHHHhcCcCcchHHHHHHHhCC
Confidence 999999999999999999999986
No 38
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=1.4e-66 Score=576.51 Aligned_cols=320 Identities=31% Similarity=0.593 Sum_probs=270.6
Q ss_pred CcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHc-CCCH--------------
Q psy2890 36 GKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILN-NTSP-------------- 100 (893)
Q Consensus 36 ~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~-g~~~-------------- 100 (893)
++|+|++|||||||.+||||+++++++|+++||+||+|++|.+++|+||||+||+.+|++. |.++
T Consensus 1 ~~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~ 80 (338)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNA 80 (338)
T ss_pred CCeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHH
Confidence 4699999999999999999999999999999999999999999999999999999999886 7653
Q ss_pred --HHHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCc
Q psy2890 101 --AKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGR 178 (893)
Q Consensus 101 --~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~ 178 (893)
+++++++++.+++++++||++.||++++.|++++|.+.++++|.+|+++|+||++.++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~----------------- 143 (338)
T cd00818 81 KCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW----------------- 143 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee-----------------
Confidence 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHHHHhhcccccceeeeeccccCCCCCCccccCCcEEE
Q psy2890 179 GWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLW 258 (893)
Q Consensus 179 c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~ 258 (893)
+++.+.+.||||++++|++.+++++ +...-+|+++++...+||
T Consensus 144 ------~v~~~~~~qwf~~l~~~~~~l~~~~-~~~~~~P~~~~~~~~~~l------------------------------ 186 (338)
T cd00818 144 ------PLIYRATPQWFIRVTKIKDRLLEAN-DKVNWIPEWVKNRFGNWL------------------------------ 186 (338)
T ss_pred ------EEEEEecCeEEEEcHHHHHHHHHHH-hcCcEECHHHHHHHHHHH------------------------------
Confidence 4789999999999999999999888 332112333332222221
Q ss_pred EEeccccccccccEEEECCCChHHHHHhhchHHHHHHHHHHhhcCccccccccccccccceEEEcCCCCCeeeEEEeccc
Q psy2890 259 IFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYKKNNNIESNNLLKKSILTQLKVLHPLTNQEIKVFVVNYV 338 (893)
Q Consensus 259 v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipv~~~~~V 338 (893)
T Consensus 187 -------------------------------------------------------------------------------- 186 (338)
T cd00818 187 -------------------------------------------------------------------------------- 186 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCccccCCCCCHHHHHHHHHcCCceeeeecCCCCCccccccccccccCCccccccCCCCCCCCHHHHHHHHHHHH
Q psy2890 339 IEKSYGRAAIGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDL 418 (893)
Q Consensus 339 ~~~~~GTG~~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~~s~~~~gl~~~~a~~~i~~~L 418 (893)
T Consensus 187 -------------------------------------------------------------------------------- 186 (338)
T cd00818 187 -------------------------------------------------------------------------------- 186 (338)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHcCCCCeeeEeeecceeeccccccCCccCeEEcCCCCeeecCCCCCCccCCCccCCCCcccccccccccccCCCCccce
Q psy2890 419 IKLGLGNKKNIFRLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKENKKFLHVSCPKCNKLAF 498 (893)
Q Consensus 419 ~~~~~~~~~~~~~l~DW~ISRQr~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~g~~l~~~~~~~~~~c~~~g~~~~ 498 (893)
+ +++||||||||+||+|||+|+|++||.+.+ .
T Consensus 187 ~-----------~l~dw~iSR~~~WGip~P~~~~~~~~~~~~-------------------------------------~ 218 (338)
T cd00818 187 E-----------NRRDWCISRQRYWGTPIPVWYCEDCGEVLV-------------------------------------R 218 (338)
T ss_pred h-----------cchhcceeeecccCceeeEEEecCCCeEEE-------------------------------------e
Confidence 1 378999999999999999999987764321 4
Q ss_pred ecCCccccccccc-chhhhhcCCCccccCCChhhhhccCCceeeecchhhHHHHHHHHHHHHHHHHHhcCccCCCcccee
Q psy2890 499 RETDTMDTFVDSS-WYYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRL 577 (893)
Q Consensus 499 re~d~~D~WfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pfk~l 577 (893)
++++||||||||+ +++...++|.+ .+++++|+|+|+++.|+|++..|+. +-++++ + ++.+..||+++
T Consensus 219 ~~~~v~~vWfda~~~~~~~~~~~~~------~~~~~~~~p~d~~~~GkDii~~wf~-~~~~~~----~-~~~~~~p~~~~ 286 (338)
T cd00818 219 RVPDVLDVWFDSGSMPYAQLHYPFE------NEDFEELFPADFILEGSDQTRGWFY-SLLLLS----T-ALFGKAPYKNV 286 (338)
T ss_pred cCCceEEEEEeCCCCHHHHcCCCCc------chhhhccCCCeEEeecchHHhHHHH-HHHHHH----H-HhcCCCccceE
Confidence 6889999999996 66665556643 2458899999999999998654321 112222 2 23457899999
Q ss_pred eecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceeccccccccCCCCccCccchhhhhCchh
Q psy2890 578 LTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADS 657 (893)
Q Consensus 578 ~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yGaD~ 657 (893)
++||+++ + .+| +|||||+||+|+|.+++++||+|+
T Consensus 287 ~~hg~~~-------~-~~g-------------------------------------~KmSKS~gn~i~~~~~~~~~~~D~ 321 (338)
T cd00818 287 IVHGFVL-------D-EDG-------------------------------------RKMSKSLGNYVDPQEVVDKYGADA 321 (338)
T ss_pred EEEeeEE-------C-CCC-------------------------------------CCCCCCCCCcCCHHHHHHHcCcHH
Confidence 9999998 3 456 899999999999999999999999
Q ss_pred HHHHHHhcCCCCCCccc
Q psy2890 658 TRLFIIFSAPPEKNLEW 674 (893)
Q Consensus 658 lRl~ll~~~~~~~d~~~ 674 (893)
+|+|+++.+++++|++|
T Consensus 322 ~R~~l~~~~~~~~d~~~ 338 (338)
T cd00818 322 LRLWVASSDVYAEDLRF 338 (338)
T ss_pred HHHHHHhCCCccCCCCC
Confidence 99999999999999875
No 39
>KOG0437|consensus
Probab=100.00 E-value=2.1e-66 Score=574.57 Aligned_cols=679 Identities=21% Similarity=0.335 Sum_probs=479.4
Q ss_pred chHHHHHHHHHHHhCCCcccCCCCC-CCCCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccc
Q psy2890 7 FVEIEKITQCYWNKINAYQTTENDT-RFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAF 85 (893)
Q Consensus 7 ~~~iE~~~~~~W~~~~~f~~~~~~~-~~~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~ 85 (893)
+.+||+++|+.|+++++|+.+...+ +.+++||+++.|.||.||.||+||+++..-.|+.+-|+|++|++|+|++|++|.
T Consensus 14 L~eiEk~~q~~W~~e~~fevda~~el~~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgFHCT 93 (1080)
T KOG0437|consen 14 LLEIEKKYQKKWDTEKVFEVDAPNELQKSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGFHCT 93 (1080)
T ss_pred HHHHHHHHHHhhhhhhheeccCchhcccccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeecccccC
Confidence 6799999999999999999875321 235899999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHc-------CCC-----------------------------------------------------------
Q psy2890 86 GMPAENAAILN-------NTS----------------------------------------------------------- 99 (893)
Q Consensus 86 G~pie~~a~~~-------g~~----------------------------------------------------------- 99 (893)
|+||..-|.+. |.+
T Consensus 94 GMPI~A~AdKLkrEie~fG~ppdf~~e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deEI~~ 173 (1080)
T KOG0437|consen 94 GMPIKASADKLKREIELFGCPPDFPEEEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEEIKK 173 (1080)
T ss_pred CCccHHhHHHHHHHHHHhCCCCCCchhhhhhhhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHHHhhc
Confidence 99998766542 111
Q ss_pred ---HHHHHHHHHHHHHHHHHHcCCcccccCccccCC--hhhHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchh
Q psy2890 100 ---PAKWTYDNVSYMKKQLSSLGLAIDWSREIITCS--PKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQV 174 (893)
Q Consensus 100 ---~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~--~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev 174 (893)
|..|....-..-.++++++|..+||+|.+.|+| |.|-.+|+|.|.+|.+.|.|..+++...|||.++++..|++.
T Consensus 174 F~d~~~WL~yFPpLc~~dlk~~gl~iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCmDHDR 253 (1080)
T KOG0437|consen 174 FADPKHWLYYFPPLCERDLKRFGLGIDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMDHDR 253 (1080)
T ss_pred ccChhHHHHhCChHHHHHHHHhCCCcceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCccccccc
Confidence 122333333444789999999999999999987 899999999999999999999999999999999999999887
Q ss_pred ccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHHHHhhcccccceeeeeccccCCCCCCccccCC
Q psy2890 175 INGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIGKSKGIFLAFPHNIKDPNKNNKLIQN 254 (893)
Q Consensus 175 ~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~wi~~s~~~~i~f~~~~~~~~~~~~~~~~ 254 (893)
..|. -|...+....-++.. +..|..+ . ... ..+
T Consensus 254 ~sGE------gV~PqeytliKle~l--------------e~~p~~l--------------------~-~~~------~~~ 286 (1080)
T KOG0437|consen 254 ASGE------GVGPQEYTLIKLEVL--------------EPFPKAL--------------------S-SLK------DLR 286 (1080)
T ss_pred ccCC------CCCcceEEEEEEEec--------------ccchhhc--------------------c-ccc------cce
Confidence 6542 232222222111111 1111100 0 000 014
Q ss_pred cEEEEEeccccccccccEEEECCCChHHHHHhhchHHH----HHHHHHHhhcCc-ccc----cccccccc-ccceEEEcC
Q psy2890 255 GKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLL----QKFILEYKKNNN-IES----NNLLKKSI-LTQLKVLHP 324 (893)
Q Consensus 255 ~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~----~~~~~~g~-~~g~~~~~P 324 (893)
.+++.+|.||+|++|.+.++|+|+-.|....+....++ ++-.+..+.++. .++ ...+..|+ ++|..+..|
T Consensus 287 v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~~~~~e~fi~t~raa~NmsyQ~~tk~~g~~~~~~~i~G~~~iGa~l~aP 366 (1080)
T KOG0437|consen 287 VYLVAATLRPETMYGQTNCYVGPDIKYGGFEACNETEVFIATERAARNMSYQKLTKERGVVSCLVTITGYDLIGAPLSAP 366 (1080)
T ss_pred eeeeehhcCCccccCccceEEcCCccEEeEEecCCceEEEeehHHHhhcchhhccccCCcccceeeecchhhcCCcccCc
Confidence 68999999999999999999999988854433221110 111111111111 111 34567787 799999999
Q ss_pred CC-CCeeeEEEecccccCCCCCcc-ccCCCCCHHHHHHHHH-------cCC-------ceeeeecC-CCCCcc------c
Q psy2890 325 LT-NQEIKVFVVNYVIEKSYGRAA-IGVPAHNKHDFYFAKK-------HSL-------LIKQVINV-KNKSYS------D 381 (893)
Q Consensus 325 ~~-~~~ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~~~~~-------~~l-------~~~~vi~~-~~g~~~------~ 381 (893)
++ ...+.+++..-|. .+.|||+ .+||+..++||...+. ||| +++++|.- ..|... +
T Consensus 367 lsv~~~vy~LPMlTi~-~~KGTGvVtsVpsdsPDDf~al~dL~kK~~lYg~~~ew~~~E~vPii~~~~fGdl~ae~vc~~ 445 (1080)
T KOG0437|consen 367 LSVYERVYALPMLTIL-ATKGTGVVTSVPSDSPDDFAALQDLKKKPELYGLKPEWVLFEIVPIIRIPGFGDLAAEVVCDE 445 (1080)
T ss_pred chhhheeeeccceeee-ccCCceeEEeCCCCCchhhhHHHhhhhcccccCCChhhccccccceeeccccchhhHHHHHHH
Confidence 95 4567888888888 9999999 9999999999977632 344 34555542 123210 0
Q ss_pred --cc-----------ccccccc---CCccccccCCCCCCCCHHHHHHHHHHHHHHcCCCCe------ee-----------
Q psy2890 382 --KI-----------WKDWYID---KENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNK------KN----------- 428 (893)
Q Consensus 382 --~~-----------~~~~~~~---~g~~~~~~s~~~~gl~~~~a~~~i~~~L~~~~~~~~------~~----------- 428 (893)
++ .+.+|.+ +|+ |+ -|.|.|..+.++++.|-..|.+.|.+-+ ++
T Consensus 446 lKiqs~~dk~klaeaK~~~y~e~fy~g~--ml-ig~y~G~KVe~~K~~i~~~li~~g~a~~y~EPEkqVmSRSGdeCiVA 522 (1080)
T KOG0437|consen 446 LKIQSPNDKKKLAEAKKLAYLEGFYEGT--ML-IGKYKGEKVEDAKPKIKTDLIETGDALKYNEPEKQVMSRSGDECIVA 522 (1080)
T ss_pred HhccCchhHHHHHHhhHHHHHHhhhcce--EE-EeccccccHHhhhhHHHHHHHhcccceeecCcchhhhccCCCceEEE
Confidence 00 0223332 455 43 4789999999999999999999998321 10
Q ss_pred -------Ee--------------------------------eecceeeccccccCCccCeEEcCCCCeeecCCCCCCccC
Q psy2890 429 -------IF--------------------------------RLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVIL 469 (893)
Q Consensus 429 -------~~--------------------------------~l~DW~ISRQr~WG~pIPi~~~~~~~~v~v~~~~lpv~l 469 (893)
+| +|..|.+||.-..||.||+ |. +-|...|
T Consensus 523 L~DQWYldYgE~eWKk~a~~cLe~l~~f~dEtR~~fE~tLdWL~~wacsRsyGLGTrlPW----D~-------qyLvESL 591 (1080)
T KOG0437|consen 523 LCDQWYLDYGEAEWKKQAKECLENLNTFSDETRNGFEDTLDWLGQWACSRSYGLGTRLPW----DE-------QYLVESL 591 (1080)
T ss_pred eccchhhhcCcHHHHHHHHHHHhhhhccCHHHHHHHHHHHHHHHhhhhhccccCCCCCCC----cH-------HHHHHhc
Confidence 11 4789999999999999997 21 1121122
Q ss_pred CCccCC------CCccccccccc-ccccCCCCccceecCCcccccccccchhhhhcCCCccccCCC-------hhhhhcc
Q psy2890 470 PETCVP------NNLLKENKKFL-HVSCPKCNKLAFRETDTMDTFVDSSWYYMRYISPKLENFMID-------DNKINYW 535 (893)
Q Consensus 470 p~~~~~------g~~l~~~~~~~-~~~c~~~g~~~~re~d~~D~WfdSsw~~~~~~~p~~~~~~~~-------~~~~~~~ 535 (893)
.+..-+ ..-|.. +.. +..-| .| .+.+.-| |-.|.|+...-|...+..+. +.+|+||
T Consensus 592 SDSTIYmAyYTvaHll~~--d~~g~~~~p-lg--i~~~QMt-----deVwdYvF~~~~~~k~t~i~~e~L~~lr~eF~Y~ 661 (1080)
T KOG0437|consen 592 SDSTIYMAYYTVAHLLHR--DLYGKVEGP-LG--IKPDQMT-----DEVWDYVFLNEPYPKNTAIPEEALSNLRREFEYF 661 (1080)
T ss_pred chhHHHHHHHHHHHHHHH--hhccCCccc-CC--CChhhcC-----HHHHHHhhccCCCCcCCCccHHHHHHHHHhhhcc
Confidence 211000 000000 000 00000 01 1111111 23455665543332221111 4679999
Q ss_pred CCceeeecchhhHHHHHHHHHHHHHHHHHhcCccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCC
Q psy2890 536 MPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNK 615 (893)
Q Consensus 536 ~PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~ 615 (893)
||+|++++|+|.+-+||.|+.|-|..|+. .+-..+.+.++|+++ .++
T Consensus 662 YPiDlrvsGKDLi~NHLtfflynHvAl~~-----~k~WPkgiraNGHLm---------LNs------------------- 708 (1080)
T KOG0437|consen 662 YPIDLRVSGKDLIPNHLTFFLYNHVALFP-----EKKWPKGIRANGHLM---------LNS------------------- 708 (1080)
T ss_pred cceeeeeccccccccceeEeeeehhhhcc-----cccCccceeeCceEE---------ecc-------------------
Confidence 99999999999999999999888887665 456778889999887 444
Q ss_pred ccceeeecCCCcceeccccccccCCCCccCccchhhhhCchhHHHHHHhcCCCCCCcccChhhhhHHHHHHHHHHHHHHh
Q psy2890 616 PIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFSYI 695 (893)
Q Consensus 616 ~~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~~~~l~rl~n~~~~ 695 (893)
+|||||.||+.+.++.|++||||+.|+.|+-++.--+|.||.++.. ...+.||++.+..
T Consensus 709 ------------------EKMSKSTGNfmTL~qaieKFgad~tRlalAdaGD~veDANF~ea~A---nAaILRLyt~~ew 767 (1080)
T KOG0437|consen 709 ------------------EKMSKSTGNFMTLEQAIEKFGADGTRLALADAGDGVEDANFVEANA---NAAILRLYTYVEW 767 (1080)
T ss_pred ------------------hhhccccCCeeeHHHHHHHhCccceeeeeecccCCcccchhHHhcc---cHHHHHHHHHHHH
Confidence 8999999999999999999999999999999988888999988764 4457888888777
Q ss_pred hhhccccccccccccCCccccC-CChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHhhcccccCCCCC
Q psy2890 696 LAPRIINIINLNIFHNDFSVIK-FNNNQKVFRRKIHKILQQINRDIKRIQYNTVVS-GCMKIFNILERINSETKFDNNKN 773 (893)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~-~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~-~l~~fvn~l~~~~k~~~~~~~~~ 773 (893)
+.+...+.+.+ ..++ -...|+.+.++++.+++..+++|+...|..|++ -+++|...-..|+.. +. .
T Consensus 768 ~eEm~~~~s~L-------rtGp~~~FaDrvf~nemN~~i~~t~~aye~~~fk~aLK~Gfyd~qaArD~Yrel---~g--~ 835 (1080)
T KOG0437|consen 768 IEEMCENRSSL-------RTGPASTFADRVFENEMNALIAKTERAYEDTLFKDALKYGFYDLQAARDMYREL---CG--E 835 (1080)
T ss_pred HHHHHhhHHhh-------ccCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHH---hc--c
Confidence 65422222233 2222 247899999999999999999999999999997 677776544444321 11 2
Q ss_pred cccHHHHHHHHHHHHHHhcccccchHHHHHHHhhccCCCCCeeeccCCCCChh
Q psy2890 774 TNNDILLYEGMSIFLRVLNPIAPHITHILWKELKYSIQQGDILNACWPKIDSL 826 (893)
Q Consensus 774 ~~~~~~l~~~l~~ll~LL~P~~P~isEEIwq~L~~~~~~~sI~~~~wP~~d~~ 826 (893)
.....++...+++...||+||+||+||.||+.+.. +++....+||.+++.
T Consensus 836 ~mh~dLv~r~ietqtlLLaPi~Ph~aeyiw~~~~~---~~~~v~~~wP~~s~~ 885 (1080)
T KOG0437|consen 836 GMHRDLVFRFIETQTLLLAPICPHLAEYIWRTVLK---KNFSVNVGWPFVSPP 885 (1080)
T ss_pred cccHHHHHHHHHHHHHHHhccchHHHHHHHHHhcc---CCceeecCCCCCCCH
Confidence 35677889999999999999999999999999987 555666699987753
No 40
>KOG0436|consensus
Probab=100.00 E-value=1.2e-64 Score=531.77 Aligned_cols=465 Identities=20% Similarity=0.293 Sum_probs=384.2
Q ss_pred CCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy2890 35 NGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQ 114 (893)
Q Consensus 35 ~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~ 114 (893)
.+.|++|+|.-|||..+||||+++.+++|+++||+|++|..|++..|+|+||++|+.+|..+|.+|.++|++..+.+++.
T Consensus 38 ~~~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL 117 (578)
T KOG0436|consen 38 GETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQL 117 (578)
T ss_pred CceeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhc-cCccc------CCCcccE
Q psy2890 115 LSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVI-NGRGW------RSDAIIE 187 (893)
Q Consensus 115 l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~-~g~c~------~~~~~v~ 187 (893)
++.+||.++ +|++|+||.|+..|++++..+.++|+||++.+..+||.+|+|++++++|. +++|+ .+|.+|.
T Consensus 118 ~k~~gi~yt--~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~gk~vsmEsg~~vv 195 (578)
T KOG0436|consen 118 WKDAGIAYT--KFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPPGKVVSMESGNPVV 195 (578)
T ss_pred HHHhCcchh--heeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcCCCCCCceeeeccCCcee
Confidence 999999999 99999999999999999999999999999999999999999999999997 45555 5889999
Q ss_pred EEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHHHHhhcccccceeeeeccccCCCCCCccccCCcEEEEEecccccc
Q psy2890 188 KKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDII 267 (893)
Q Consensus 188 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl 267 (893)
++++.+|||+|++|+..|.+++ ...|.
T Consensus 196 ~~kE~NY~FrLSkfqk~l~d~l-rkNP~---------------------------------------------------- 222 (578)
T KOG0436|consen 196 WRKEDNYFFRLSKFQKPLEDHL-RKNPR---------------------------------------------------- 222 (578)
T ss_pred EecccceeeeHHhhhhHHHHHH-hcCCC----------------------------------------------------
Confidence 9999999999999999999988 32221
Q ss_pred ccccEEEECCCChHHHHHhhchHHHHHHHHHHhhcCccccccccccccccceEEEcCCCCCeeeEEEecccccCCCCCcc
Q psy2890 268 YGITFCVISPEHPLAIFAARNNLLLQKFILEYKKNNNIESNNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAA 347 (893)
Q Consensus 268 ~g~~~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipv~~~~~V~~~~~GTG~ 347 (893)
||. +.+
T Consensus 223 ---------------------------------------------------------------------fvq-Ps~---- 228 (578)
T KOG0436|consen 223 ---------------------------------------------------------------------FVQ-PSY---- 228 (578)
T ss_pred ---------------------------------------------------------------------ccC-chH----
Confidence 111 000
Q ss_pred ccCCCCCHHHHHHHHHcCCceeeeecCCCCCccccccccccccCCccccccCCCCCCCCHHHHHHHHHHHHHHcCCCCee
Q psy2890 348 IGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNKK 427 (893)
Q Consensus 348 ~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~~s~~~~gl~~~~a~~~i~~~L~~~~~~~~~ 427 (893)
-.++|+++|+.
T Consensus 229 --------------------------------------------------------------~~~qVl~~lkt------- 239 (578)
T KOG0436|consen 229 --------------------------------------------------------------FHNQVLSWLKT------- 239 (578)
T ss_pred --------------------------------------------------------------HHHHHHHHHHc-------
Confidence 12234445544
Q ss_pred eEeeecceeecc--cc-ccCCccCeEEcCCCCeeecCCCCCCccCCCccCCCCcccccccccccccCCCCccceecCCcc
Q psy2890 428 NIFRLRDWAISR--QR-YWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKENKKFLHVSCPKCNKLAFRETDTM 504 (893)
Q Consensus 428 ~~~~l~DW~ISR--Qr-~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~g~~l~~~~~~~~~~c~~~g~~~~re~d~~ 504 (893)
.|+|-.||| +| -||+|.|- + +.+|+
T Consensus 240 ---glpDlSISRpsarl~WGIPvP~----d---------------------------------------------dsQtI 267 (578)
T KOG0436|consen 240 ---GLPDLSISRPSARLDWGIPVPG----D---------------------------------------------DSQTI 267 (578)
T ss_pred ---CCCcccccChhhhcccCCCCCC----C---------------------------------------------CcceE
Confidence 278888999 76 69999993 0 34689
Q ss_pred cccccccchhhh-hcCCCccccCCChhhhhccCCceeeecchhhHHHHHHHHHHHHHHHHHhcCccCCCccceeeecceE
Q psy2890 505 DTFVDSSWYYMR-YISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMI 583 (893)
Q Consensus 505 D~WfdSsw~~~~-~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pfk~l~~~G~v 583 (893)
+||||.-..|+. .+.|... .- -+..+..|||+.+|+.|+|.+.+| +.||++||+.+|+ ++.+.+++||+.
T Consensus 268 YVWfDAL~nYiSvig~~~~~-~N-~k~~ls~~wPat~HvIGKDIlrFH---avYWPafLmaAGl----plP~~I~vHghw 338 (578)
T KOG0436|consen 268 YVWFDALLNYISVIGYPNKQ-QN-LKTALSFGWPATLHVIGKDILRFH---AVYWPAFLMAAGL----PLPKMIFVHGHW 338 (578)
T ss_pred EEeHHHHhhHHHhhcCCchh-cc-ccceeecCCCceeeehhhhhhhhh---hhhhHHHHHhcCC----CCccEEEEeeee
Confidence 999999765544 4555311 10 134577899999999999999999 5589999999998 889999999999
Q ss_pred eceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceeccccccccCCCCccCccchhhhhCchhHHHHHH
Q psy2890 584 LNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFII 663 (893)
Q Consensus 584 ~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll 663 (893)
+ .+| .|||||+||+|||.+++++||+|++|+|||
T Consensus 339 t---------~ng-------------------------------------mKMsKSLGNvvdP~~l~~kygvD~vRyflL 372 (578)
T KOG0436|consen 339 T---------KNG-------------------------------------MKMSKSLGNVVDPFELVQKYGVDAVRYFLL 372 (578)
T ss_pred e---------ecc-------------------------------------eecchhhccccCHHHHHHHhCccceeeEee
Confidence 8 666 899999999999999999999999999999
Q ss_pred hcCCCCCCcccChhhhhHHH--HHHHHHHHHHHhhhhccccccccccccCC----ccccCCChhHHHHHHHHHHHHHHHH
Q psy2890 664 FSAPPEKNLEWSDIGIEGAY--RFLNRVWNFSYILAPRIINIINLNIFHND----FSVIKFNNNQKVFRRKIHKILQQIN 737 (893)
Q Consensus 664 ~~~~~~~d~~~~~~~i~~~~--~~l~rl~n~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~il~~l~~~i~~v~ 737 (893)
..+.++.|-+|+++.+.... ...+.+-|++..+... .+++.+.. .+......++..+.+.++.+.+.+.
T Consensus 373 r~~~l~~Dgdy~eekl~k~~n~~La~~lG~LlnRc~gk-----kln~sn~e~~l~~~s~~v~ae~~~lv~~v~kl~ev~a 447 (578)
T KOG0436|consen 373 REGELGNDGDYSEEKLIKIVNAHLANTLGNLLNRCLGK-----KLNISNCESTLVVDSPTVAAEGEPLVDTVEKLPEVAA 447 (578)
T ss_pred eccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhc-----ccChhccccccccCCcchhhccchHHHHHHHhHHHHH
Confidence 99999999999999987754 2345555666555431 11111000 0111223455678888999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhhcccccCCCC--Cc-------ccHHHHHHHHHHHHHHhcccccchHHHHHHHhhc
Q psy2890 738 RDIKRIQYNTVVSGCMKIFNILERINSETKFDNNK--NT-------NNDILLYEGMSIFLRVLNPIAPHITHILWKELKY 808 (893)
Q Consensus 738 ~~~e~~~f~~ai~~l~~fvn~l~~~~k~~~~~~~~--~~-------~~~~~l~~~l~~ll~LL~P~~P~isEEIwq~L~~ 808 (893)
+.|++|.+..|+.++...+|..+.+.+.+.+|.-. .+ .....+.++|+.+.+||.|+||.+|.+++.+|+-
T Consensus 448 ~~~d~f~~~~ale~V~si~n~~ntlvq~~aPWkl~~dsq~~~~~la~~~~~~le~lrv~~illqpv~Psls~~llsqlgv 527 (578)
T KOG0436|consen 448 TNYDNFSLYSALEAVLSIGNAGNTLVQQRAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQPVAPSLSLRLLSQLGV 527 (578)
T ss_pred hhcccccHHHHHHHHHHHHHhhhhhhhhcCCceeccccCccHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHcCC
Confidence 99999999999999999999999998776665321 11 2244567889999999999999999999999986
Q ss_pred c
Q psy2890 809 S 809 (893)
Q Consensus 809 ~ 809 (893)
.
T Consensus 528 s 528 (578)
T KOG0436|consen 528 S 528 (578)
T ss_pred C
Confidence 3
No 41
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=7.4e-60 Score=518.42 Aligned_cols=305 Identities=53% Similarity=0.999 Sum_probs=268.5
Q ss_pred cEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy2890 37 KFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLS 116 (893)
Q Consensus 37 ~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~ 116 (893)
||+|++|||||||.+||||+++++++|+++||+|++|++|.+++|+|+||+||+.+|++.|.+|.++++++.+.++++++
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~ 80 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLK 80 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeE
Q psy2890 117 SLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYA 196 (893)
Q Consensus 117 ~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~ 196 (893)
+|||++||++++.|++|.|.+.++++|.+|+++|+||++..+|+|| +.++||||
T Consensus 81 ~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~--------------------------~~~~~~f~ 134 (314)
T cd00812 81 RMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWC--------------------------KLLDQWFL 134 (314)
T ss_pred HhccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeee--------------------------CccceEEE
Confidence 9999999999999999999999999999999999999999999999 35689999
Q ss_pred Ee--cchHHHHHHHHHhhCCCChHHHHHHHHhhcccccceeeeeccccCCCCCCccccCCcEEEEEeccccccccccEEE
Q psy2890 197 KI--TNYAEELLEYVKKKLPYWPKKVRLMQVNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCV 274 (893)
Q Consensus 197 ~l--~~~~~~l~~~~~~~~~~~p~~~~~~~~~wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~ 274 (893)
++ ++|++.|.+++ +....||+++++.+++||
T Consensus 135 ~l~~~~~~~~l~~~l-~~~~~~p~~~~~~~~~~l---------------------------------------------- 167 (314)
T cd00812 135 KYSETEWKEKLLKDL-EKLDGWPEEVRAMQENWI---------------------------------------------- 167 (314)
T ss_pred EcCcHHHHHHHHHHH-HhcCcCCHHHHHHHHHHh----------------------------------------------
Confidence 99 99999999998 444346655443222221
Q ss_pred ECCCChHHHHHhhchHHHHHHHHHHhhcCccccccccccccccceEEEcCCCCCeeeEEEecccccCCCCCccccCCCCC
Q psy2890 275 ISPEHPLAIFAARNNLLLQKFILEYKKNNNIESNNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAAIGVPAHN 354 (893)
Q Consensus 275 v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipv~~~~~V~~~~~GTG~~~~Pah~ 354 (893)
T Consensus 168 -------------------------------------------------------------------------------- 167 (314)
T cd00812 168 -------------------------------------------------------------------------------- 167 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHcCCceeeeecCCCCCccccccccccccCCccccccCCCCCCCCHHHHHHHHHHHHHHcCCCCeeeEeeecc
Q psy2890 355 KHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNKKNIFRLRD 434 (893)
Q Consensus 355 ~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~~s~~~~gl~~~~a~~~i~~~L~~~~~~~~~~~~~l~D 434 (893)
.
T Consensus 168 ------------------------------------------------------------------------------~- 168 (314)
T cd00812 168 ------------------------------------------------------------------------------G- 168 (314)
T ss_pred ------------------------------------------------------------------------------e-
Confidence 1
Q ss_pred eeeccccccCCccCeEEcCCCCeeecCCCCCCccCCCccCCCCcccccccccccccCCCCccceecCCcccccccccchh
Q psy2890 435 WAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKENKKFLHVSCPKCNKLAFRETDTMDTFVDSSWYY 514 (893)
Q Consensus 435 W~ISRQr~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~g~~l~~~~~~~~~~c~~~g~~~~re~d~~D~WfdSsw~~ 514 (893)
||||+.||+|+|+ ++|+|+||||.||+
T Consensus 169 --isR~~~wGipvP~---------------------------------------------------~~~i~~w~ds~~y~ 195 (314)
T cd00812 169 --CSRQRYWGTPIPW---------------------------------------------------TDTMESLSDSTWYY 195 (314)
T ss_pred --eeeecCCcCCcCc---------------------------------------------------ccccccccccHHHH
Confidence 6999999999994 24799999999998
Q ss_pred hhhcCCCccccC------CChhhhhccCCceeeecchhhHHHHHHHHHHHHHHHHHhcCccCCCccceeeecceEeceee
Q psy2890 515 MRYISPKLENFM------IDDNKINYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTY 588 (893)
Q Consensus 515 ~~~~~p~~~~~~------~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pfk~l~~~G~v~~~~~ 588 (893)
+.|+........ ..++++++|+|+|+|++|+||+.+|+.|.++|+.+|...|++ ...|++++++||||+
T Consensus 196 ~~y~~~~~~~~~~~~~~~~~~~~~~~w~p~di~v~G~D~i~~h~~~~~~~~~~l~~~g~~-~~~~~~~~~~~g~v~---- 270 (314)
T cd00812 196 ARYTDAHNLEQPYEGDLEFDREEFEYWYPVDIYIGGKEHAPNHLLYSRFNHKALFDEGLV-TDEPPKGLIVQGMVL---- 270 (314)
T ss_pred HHHHhcccccCcchhhhhhhHHHHHHhCCCeeeecchhHHHHHHHHHHHHHHHHcCcccc-cccCcHHheecceEe----
Confidence 888654321111 124568999999999999999999999999999999998865 567899999999998
Q ss_pred eecccCCCCccccCCCcccccccCCCCccceeeecCCCcceeccccccccCCCCccCccchhhhhCchhHHHHHHhcCCC
Q psy2890 589 YRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPP 668 (893)
Q Consensus 589 ~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~~~~~ 668 (893)
.+| +|||||+||+|+|++++++||+|++|||+++.++
T Consensus 271 -----~~g-------------------------------------~KmSkS~Gn~v~~~dll~~~~~Da~R~~ll~~~~- 307 (314)
T cd00812 271 -----LEG-------------------------------------EKMSKSKGNVVTPDEAIKKYGADAARLYILFAAP- 307 (314)
T ss_pred -----cCc-------------------------------------cccCCcCCCCCCHHHHHHHhCcHHHHHHHHhcCC-
Confidence 445 7999999999999999999999999999998877
Q ss_pred CCCcccC
Q psy2890 669 EKNLEWS 675 (893)
Q Consensus 669 ~~d~~~~ 675 (893)
.|.+|+
T Consensus 308 -~~~~f~ 313 (314)
T cd00812 308 -PDADFD 313 (314)
T ss_pred -cCCCCC
Confidence 666665
No 42
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=5.4e-60 Score=530.97 Aligned_cols=339 Identities=27% Similarity=0.448 Sum_probs=271.5
Q ss_pred EEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q psy2890 38 FYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSS 117 (893)
Q Consensus 38 ~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 117 (893)
|+||+|+|||||.|||||++.++.+|+++||+||+|++|++++|+|+||++|+.+|+++|++|.++++++++.+++++++
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~ 80 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEA 80 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred CEEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCccc-------------CCCc
Q psy2890 118 LGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGW-------------RSDA 184 (893)
Q Consensus 118 lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~-------------~~~~ 184 (893)
+||++| ++.+|+++.|.++|+++|.+|+++|+||+++..++||+.|+++|++.++. |.|| .||.
T Consensus 81 ~~I~~D--~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~-g~CP~C~~~~a~g~~Ce~cG~ 157 (391)
T PF09334_consen 81 LNISYD--RFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVE-GTCPYCGSDKARGDQCENCGR 157 (391)
T ss_dssp TT---S--EEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGET-CEETTT--SSCTTTEETTTSS
T ss_pred cCCCCc--ceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceee-ccccCcCccccCCCcccCCCC
Confidence 999999 89999999999999999999999999999999999999999999998874 6665 3444
Q ss_pred cc-----------------EEEeeceeeEEecchHHHHHHHHHhhCCC-ChHHHHHHHHhhcccccceeeeeccccCCCC
Q psy2890 185 II-----------------EKKKIPMYYAKITNYAEELLEYVKKKLPY-WPKKVRLMQVNWIGKSKGIFLAFPHNIKDPN 246 (893)
Q Consensus 185 ~v-----------------~~~~~~~~~~~l~~~~~~l~~~~~~~~~~-~p~~~~~~~~~wi~~s~~~~i~f~~~~~~~~ 246 (893)
.+ +.|++++|||+|++|++.|.+++ +..+. ||..++.++++||.
T Consensus 158 ~~~~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l-~~~~~~~~~~~~~~~~~~l~----------------- 219 (391)
T PF09334_consen 158 PLEPEELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWL-ESNPDFPPPRVREIVRNWLK----------------- 219 (391)
T ss_dssp BEECCCSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHH-HHSTTSSHHHHHHHHHHHHH-----------------
T ss_pred CcccccccCCccccccccCccccceEEEEehHHhHHHHHHHH-hcCCCCCChhHHHHHHHHhh-----------------
Confidence 44 48889999999999999999999 66655 88777777666653
Q ss_pred CCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhchHHHHHHHHHHhhcCccccccccccccccceEEEcCCC
Q psy2890 247 KNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYKKNNNIESNNLLKKSILTQLKVLHPLT 326 (893)
Q Consensus 247 ~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~ 326 (893)
T Consensus 220 -------------------------------------------------------------------------------- 219 (391)
T PF09334_consen 220 -------------------------------------------------------------------------------- 219 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeeeEEEecccccCCCCCccccCCCCCHHHHHHHHHcCCceeeeecCCCCCccccccccccccCCccccccCCCCCCCC
Q psy2890 327 NQEIKVFVVNYVIEKSYGRAAIGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMS 406 (893)
Q Consensus 327 ~~~ipv~~~~~V~~~~~GTG~~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~~s~~~~gl~ 406 (893)
+
T Consensus 220 -------------------------------------------------~------------------------------ 220 (391)
T PF09334_consen 220 -------------------------------------------------E------------------------------ 220 (391)
T ss_dssp -------------------------------------------------T------------------------------
T ss_pred -------------------------------------------------c------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHcCCCCeeeEeeecceeeccccccCCccCeEEcCCCCeeecCCCCCCccCCCccCCCCccccccccc
Q psy2890 407 HKEATNAISTDLIKLGLGNKKNIFRLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKENKKFL 486 (893)
Q Consensus 407 ~~~a~~~i~~~L~~~~~~~~~~~~~l~DW~ISRQr~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~g~~l~~~~~~~ 486 (893)
.|+||||||.-.||+|+|- +
T Consensus 221 ------------------------~L~d~~Is~~~~WGI~vP~----~-------------------------------- 240 (391)
T PF09334_consen 221 ------------------------GLPDLSISRPLDWGIPVPG----D-------------------------------- 240 (391)
T ss_dssp ----------------------------EE-ECTTSSSEEETT----E--------------------------------
T ss_pred ------------------------ccCceeeecCCCCcceeec----c--------------------------------
Confidence 2788999999999999992 0
Q ss_pred ccccCCCCccceecCCcccccccccchhhhhcCCCccccCCChhhhhccCC-----ceeeecchhhHHHHHHHHHHHHHH
Q psy2890 487 HVSCPKCNKLAFRETDTMDTFVDSSWYYMRYISPKLENFMIDDNKINYWMP-----VDQYIGGIEHAILHLLYARFWTKL 561 (893)
Q Consensus 487 ~~~c~~~g~~~~re~d~~D~WfdSsw~~~~~~~p~~~~~~~~~~~~~~~~P-----vD~~igG~D~~i~Hl~y~rf~~~~ 561 (893)
+..|++||||..+.|+....-..... -+.+.++.|++ .-+++-|+|.+.+|.. +|+.+
T Consensus 241 -------------~~~~iyVWfdal~~Ylt~~~~~~~~~-~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i---~~pa~ 303 (391)
T PF09334_consen 241 -------------PGQVIYVWFDALIGYLTATGYLAEKR-GDPEEFKKWWANDSDVEIVHFIGKDIIRFHAI---YWPAM 303 (391)
T ss_dssp -------------EEEEE-HHHHHHTHHHHTTTTTHHHT-TTSHHHHHHHCST--SEEEEEEEGGGHHHHHT---HHHHH
T ss_pred -------------CCceEEEcchHHHHHHHHhccccccc-cccchhhhhccccCCceEEEEEccchhHHHHH---HhHHH
Confidence 23489999999876665432111000 02344555552 2289999999999955 78998
Q ss_pred HHHhcCccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceeccccccccCCC
Q psy2890 562 MYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKN 641 (893)
Q Consensus 562 l~~~g~~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSKSkg 641 (893)
|...|+ .+++++++||+++ .+| +|||||+|
T Consensus 304 l~a~~~----~lP~~i~~~~~~~---------~~g-------------------------------------~K~SkS~g 333 (391)
T PF09334_consen 304 LLAAGL----PLPRRIVVHGFLT---------LDG-------------------------------------EKMSKSRG 333 (391)
T ss_dssp HHHCTB-------SEEEEE--EE---------ETT-------------------------------------CCEETTTT
T ss_pred HhcccC----CCCCEEEeeeeEE---------ECC-------------------------------------eeccccCC
Confidence 888765 5679999999998 555 89999999
Q ss_pred CccCccchhhhhCchhHHHHHHhcCCCCCCcccChhhhhHHH
Q psy2890 642 NGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAY 683 (893)
Q Consensus 642 N~i~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~~ 683 (893)
|+|+|.+++++||+|++|+||+..+|..+|.+|+++.+....
T Consensus 334 n~i~~~~~~~~~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~ 375 (391)
T PF09334_consen 334 NVIWPDDLLEEYGADALRYYLAREGPEGQDSDFSWEDFIERV 375 (391)
T ss_dssp ESSBHHHHHHHH-HHHHHHHHHHHSSTTS-EEE-HHHHHHHH
T ss_pred cccCHHHHHHhCChHHHHHHHHHhcCCCCCCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999887643
No 43
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=2.4e-59 Score=516.34 Aligned_cols=315 Identities=26% Similarity=0.442 Sum_probs=273.4
Q ss_pred cEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy2890 37 KFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLS 116 (893)
Q Consensus 37 ~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~ 116 (893)
+|+|++|||||||.|||||+++++++|+++||+||+|++|++++|+|+||+||+.+|+++|++|+++++++++.++++++
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~ 80 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFK 80 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeE
Q psy2890 117 SLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYA 196 (893)
Q Consensus 117 ~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~ 196 (893)
+|||++| .+++|+++.|.+.++++|.+|.++|++|++...++|||.|+++|+ |.++++||||
T Consensus 81 ~LgI~~D--~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~----------------e~~~~~~~ff 142 (319)
T cd00814 81 WLNISFD--YFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP----------------EWREEEHYFF 142 (319)
T ss_pred HcCCcCC--CCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEee----------------EEEeeeeEEE
Confidence 9999888 788999999999999999999999999999999999999999998 5889999999
Q ss_pred EecchHHHHHHHHHhhCC--CChHHHHHHHHhhcccccceeeeeccccCCCCCCccccCCcEEEEEeccccccccccEEE
Q psy2890 197 KITNYAEELLEYVKKKLP--YWPKKVRLMQVNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCV 274 (893)
Q Consensus 197 ~l~~~~~~l~~~~~~~~~--~~p~~~~~~~~~wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~ 274 (893)
+|++|++.|++++ +..+ .||+++++.+++||.
T Consensus 143 ~l~~~~~~l~~~~-~~~~~~~~p~~~~~~~~~~l~--------------------------------------------- 176 (319)
T cd00814 143 RLSKFQDRLLEWL-EKNPDFIWPENARNEVLSWLK--------------------------------------------- 176 (319)
T ss_pred EhHHHHHHHHHHH-HhCCccCCCHHHHHHHHHHHh---------------------------------------------
Confidence 9999999999998 5444 377766665555542
Q ss_pred ECCCChHHHHHhhchHHHHHHHHHHhhcCccccccccccccccceEEEcCCCCCeeeEEEecccccCCCCCccccCCCCC
Q psy2890 275 ISPEHPLAIFAARNNLLLQKFILEYKKNNNIESNNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAAIGVPAHN 354 (893)
Q Consensus 275 v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipv~~~~~V~~~~~GTG~~~~Pah~ 354 (893)
T Consensus 177 -------------------------------------------------------------------------------- 176 (319)
T cd00814 177 -------------------------------------------------------------------------------- 176 (319)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHcCCceeeeecCCCCCccccccccccccCCccccccCCCCCCCCHHHHHHHHHHHHHHcCCCCeeeEeeecc
Q psy2890 355 KHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNKKNIFRLRD 434 (893)
Q Consensus 355 ~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~~s~~~~gl~~~~a~~~i~~~L~~~~~~~~~~~~~l~D 434 (893)
+ .++|
T Consensus 177 ---------------------~------------------------------------------------------~l~d 181 (319)
T cd00814 177 ---------------------E------------------------------------------------------GLKD 181 (319)
T ss_pred ---------------------C------------------------------------------------------CCcc
Confidence 0 1789
Q ss_pred eeecccc-ccCCccCeEEcCCCCeeecCCCCCCccCCCccCCCCcccccccccccccCCCCccceecCCcccccccccch
Q psy2890 435 WAISRQR-YWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKENKKFLHVSCPKCNKLAFRETDTMDTFVDSSWY 513 (893)
Q Consensus 435 W~ISRQr-~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~g~~l~~~~~~~~~~c~~~g~~~~re~d~~D~WfdSsw~ 513 (893)
||||||+ .||+|+|. + +.+|++|||||.+.
T Consensus 182 ~~isR~~~~WGipvp~----~---------------------------------------------~~~~~yvWfda~~~ 212 (319)
T cd00814 182 LSITRDLFDWGIPVPL----D---------------------------------------------PGKVIYVWFDALIG 212 (319)
T ss_pred cCCCccCcccCeeCCC----C---------------------------------------------CCcEEEEehhhHHH
Confidence 9999999 99999995 0 23589999999866
Q ss_pred hhhh-cCCCccccCCChhhhhccCCceeeecchhhHHHHHHHHHHHHHHHHHhcCccCCCccceeeecceEeceeeeecc
Q psy2890 514 YMRY-ISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIE 592 (893)
Q Consensus 514 ~~~~-~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pfk~l~~~G~v~~~~~~~~d 592 (893)
|+.. +.+....+ +...+....|.|+++.|+|++.+|.. +|++++...| ..|++.+++||+++
T Consensus 213 y~~~~~~~~~~~~--~~~~~~~~~~~~v~~~G~D~~~fh~~---~~pa~l~~~~----~~~~~~~~~~~~~~-------- 275 (319)
T cd00814 213 YISATGYYNEEWG--NSWWWKDGWPELVHFIGKDIIRFHAI---YWPAMLLGAG----LPLPTRIVAHGYLT-------- 275 (319)
T ss_pred HHHHccccccccc--chhhhhcCCCceEEEEeechhhhhHH---HHHHHHHhCC----CCCCcEeeeeeeEE--------
Confidence 5543 23321111 00234456799999999999888854 7888877766 37899999999998
Q ss_pred cCCCCccccCCCcccccccCCCCccceeeecCCCcceeccccccccCCCCccCccchhhhhCchhHHHHHHhcCCCCCCc
Q psy2890 593 NSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNL 672 (893)
Q Consensus 593 ~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~~~~~~~d~ 672 (893)
.+| +|||||+||+|+|.+++++||+|++|+|++..+|..+|.
T Consensus 276 -~~g-------------------------------------~kmSkS~gn~i~~~~~l~~~~~d~~R~~l~~~~~~~~d~ 317 (319)
T cd00814 276 -VEG-------------------------------------KKMSKSRGNVVDPDDLLERYGADALRYYLLRERPEGKDS 317 (319)
T ss_pred -ECC-------------------------------------eeecccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCC
Confidence 445 899999999999999999999999999999999999998
Q ss_pred cc
Q psy2890 673 EW 674 (893)
Q Consensus 673 ~~ 674 (893)
+|
T Consensus 318 ~f 319 (319)
T cd00814 318 DF 319 (319)
T ss_pred CC
Confidence 76
No 44
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=2.3e-59 Score=515.86 Aligned_cols=298 Identities=33% Similarity=0.592 Sum_probs=250.8
Q ss_pred cEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCC-------------CHHHH
Q psy2890 37 KFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNT-------------SPAKW 103 (893)
Q Consensus 37 ~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~-------------~~~~~ 103 (893)
||+|++|||||||.+||||+++++++|+++||+||+|++|.+++||||||+||+.+|++.+. +|.++
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEF 80 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999887 89999
Q ss_pred HHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCC
Q psy2890 104 TYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSD 183 (893)
Q Consensus 104 ~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~ 183 (893)
++++++.++++|++|||++||+.++.|+++.|.+.++++|.+|+++|+||++.++|
T Consensus 81 ~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v------------------------ 136 (312)
T cd00668 81 VEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV------------------------ 136 (312)
T ss_pred HHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee------------------------
Confidence 99999999999999999999999999999999999999999999999999999887
Q ss_pred cccEEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHHHHhhcccccceeeeeccccCCCCCCccccCCcEEEEEecc
Q psy2890 184 AIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTR 263 (893)
Q Consensus 184 ~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~ 263 (893)
+...|||+++++|++++++.+ +..+-+|+..++...+||
T Consensus 137 -----~~~~~~f~~~~~l~~~~~~~~-~~~~~~p~~~~~~~~~~l----------------------------------- 175 (312)
T cd00668 137 -----RITEQWFFDMPKFKEKLLKAL-RRGKIVPEHVKNRMEAWL----------------------------------- 175 (312)
T ss_pred -----EeeeeEEEEcHHHHHHHHHHH-hcCCcCChHHHHHHHHHH-----------------------------------
Confidence 456799999999999998887 333223333332222222
Q ss_pred ccccccccEEEECCCChHHHHHhhchHHHHHHHHHHhhcCccccccccccccccceEEEcCCCCCeeeEEEecccccCCC
Q psy2890 264 IDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYKKNNNIESNNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSY 343 (893)
Q Consensus 264 p~tl~g~~~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipv~~~~~V~~~~~ 343 (893)
T Consensus 176 -------------------------------------------------------------------------------- 175 (312)
T cd00668 176 -------------------------------------------------------------------------------- 175 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCCCCHHHHHHHHHcCCceeeeecCCCCCccccccccccccCCccccccCCCCCCCCHHHHHHHHHHHHHHcCC
Q psy2890 344 GRAAIGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGL 423 (893)
Q Consensus 344 GTG~~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~~s~~~~gl~~~~a~~~i~~~L~~~~~ 423 (893)
+
T Consensus 176 ---------------------------------------------------------------------------~---- 176 (312)
T cd00668 176 ---------------------------------------------------------------------------E---- 176 (312)
T ss_pred ---------------------------------------------------------------------------h----
Confidence 1
Q ss_pred CCeeeEeeecceeeccccccCCccCeEEcCCCCeeecCCCCCCccCCCccCCCCcccccccccccccCCCCccceecCCc
Q psy2890 424 GNKKNIFRLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKENKKFLHVSCPKCNKLAFRETDT 503 (893)
Q Consensus 424 ~~~~~~~~l~DW~ISRQr~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~g~~l~~~~~~~~~~c~~~g~~~~re~d~ 503 (893)
+..|||||||++||+|+|- +|
T Consensus 177 -------~~~d~~isR~~~WG~~~P~----------------------------------------------------~~ 197 (312)
T cd00668 177 -------SLLDWAISRQRYWGTPLPE----------------------------------------------------DV 197 (312)
T ss_pred -------CCCCeEEeccCCCCCcCCc----------------------------------------------------cc
Confidence 1339999999999999992 37
Q ss_pred ccccccccchhhhh-cCCCccccCCChhhhhccCCceeeecchhhHHHHHHHHHHHHHHHHHhcCccCCCccceeeecce
Q psy2890 504 MDTFVDSSWYYMRY-ISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGM 582 (893)
Q Consensus 504 ~D~WfdSsw~~~~~-~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pfk~l~~~G~ 582 (893)
+||||||+.+|+.. .++. +.+.+++|+|.|+|++|+||...|..+ +...+... ....||+++++|||
T Consensus 198 i~~Wfds~~~~~~~~~~~~------~~~~~~~~~~~di~~~G~D~~~~h~~~---~~~~~~~~---~~~~~~~~~~~~g~ 265 (312)
T cd00668 198 FDVWFDSGIGPLGSLGYPE------EKEWFKDSYPADWHLIGKDILRGWANF---WITMLVAL---FGEIPPKNLLVHGF 265 (312)
T ss_pred ccchhhccHHHHHHcCCCc------cchhhhhcCCceEEEEecchhhhHHHH---HHHHHHHh---cCCCCcceeEECcE
Confidence 99999998544443 3333 234577889999999999998777542 22222222 33459999999999
Q ss_pred EeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceeccccccccCCCCccCccchhhhhCchhHHHHH
Q psy2890 583 ILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFI 662 (893)
Q Consensus 583 v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yGaD~lRl~l 662 (893)
|+ + ++| +|||||+||+|+|.+++++||+|++|+|+
T Consensus 266 ~~-------~-~~g-------------------------------------~KmSKS~gn~v~~~d~~~~~~~da~R~~l 300 (312)
T cd00668 266 VL-------D-EGG-------------------------------------QKMSKSKGNVIDPSDVVEKYGADALRYYL 300 (312)
T ss_pred EE-------c-CCC-------------------------------------ccccccCCCcCCHHHHHHHcCcHHHHHHH
Confidence 98 3 444 79999999999999999999999999999
Q ss_pred HhcCCCCCCccc
Q psy2890 663 IFSAPPEKNLEW 674 (893)
Q Consensus 663 l~~~~~~~d~~~ 674 (893)
+..+++++|.+|
T Consensus 301 ~~~~~~~~d~~~ 312 (312)
T cd00668 301 TSLAPYGDDIRL 312 (312)
T ss_pred HhcCCccCCCCC
Confidence 999999999876
No 45
>KOG1247|consensus
Probab=100.00 E-value=3.5e-47 Score=399.45 Aligned_cols=465 Identities=18% Similarity=0.243 Sum_probs=362.3
Q ss_pred CCcEEEEecCCCCCCcCcchHHHh-HHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2890 35 NGKFYTCSMLPYPSGKLHMGHVRN-YTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKK 113 (893)
Q Consensus 35 ~~~~~i~~~~P~~nG~lHiGH~~~-~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~ 113 (893)
+.+.+|+++.||+|..+|+|++.+ .+.+||+|||.+.+|++.++++|+|++|..+|.+|.++|++|++++++++..++.
T Consensus 13 ~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkaleeg~tP~elcdKyh~ihk~ 92 (567)
T KOG1247|consen 13 ERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEEGLTPQELCDKYHGIHKV 92 (567)
T ss_pred ccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHHccCCHHHHHHhcchhHHH
Confidence 567899999999999999999887 7789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCC----------
Q psy2890 114 QLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSD---------- 183 (893)
Q Consensus 114 ~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~---------- 183 (893)
.++.++|++| .+.+|+.+...+.+|.+|.+|+++|+.-+..-.+.||..|+++||+ ..++|.|+.||
T Consensus 93 vy~Wf~IdfD--~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~flad-r~veg~cp~C~yd~ARGDqcd 169 (567)
T KOG1247|consen 93 VYDWFKIDFD--EFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLAD-RFVEGKCPFCGYDDARGDQCD 169 (567)
T ss_pred HHHhhccccc--ccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccc-hhhhccCCCCCCccccchhhh
Confidence 9999999999 8889999999999999999999999999999999999999999999 44567777555
Q ss_pred --------------------cccEEEeeceeeEEecchHHHHHHHHHhhC--CCChHHHHHHHHhhcccccceeeeeccc
Q psy2890 184 --------------------AIIEKKKIPMYYAKITNYAEELLEYVKKKL--PYWPKKVRLMQVNWIGKSKGIFLAFPHN 241 (893)
Q Consensus 184 --------------------~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~--~~~p~~~~~~~~~wi~~s~~~~i~f~~~ 241 (893)
+-.+.++..+.||.|+++.++|.+++..++ ..|..+.+.+.++||.
T Consensus 170 ~cG~l~N~~el~~pkc~ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~~~~~~~~WS~Na~~it~sWlk------------ 237 (567)
T KOG1247|consen 170 KCGKLVNAAELKIPKCKICQAGPVVRQTQHLFLSLDKLEPRLEEWLRRTLVEGDWSQNAQNITRSWLK------------ 237 (567)
T ss_pred hhhhhcCHHHhcCcchheeccCCeeeeeeEEEEEhHHhHHHHHHHHHhccccCCCccchHHHHHHHHH------------
Confidence 467789999999999999999999996555 3488777777777763
Q ss_pred cCCCCCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhchHHHHHHHHHHhhcCccccccccccccccceEE
Q psy2890 242 IKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYKKNNNIESNNLLKKSILTQLKV 321 (893)
Q Consensus 242 ~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 321 (893)
T Consensus 238 -------------------------------------------------------------------------------- 237 (567)
T KOG1247|consen 238 -------------------------------------------------------------------------------- 237 (567)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EcCCCCCeeeEEEecccccCCCCCccccCCCCCHHHHHHHHHcCCceeeeecCCCCCccccccccccccCCccccccCCC
Q psy2890 322 LHPLTNQEIKVFVVNYVIEKSYGRAAIGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCK 401 (893)
Q Consensus 322 ~~P~~~~~ipv~~~~~V~~~~~GTG~~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~~s~~ 401 (893)
+|
T Consensus 238 ------------------------------------------------------~g------------------------ 239 (567)
T KOG1247|consen 238 ------------------------------------------------------DG------------------------ 239 (567)
T ss_pred ------------------------------------------------------cc------------------------
Confidence 11
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCCeeeEeeecceeeccccccCCccCeEEcCCCCeeecCCCCCCccCCCccCCCCcccc
Q psy2890 402 YNNMSHKEATNAISTDLIKLGLGNKKNIFRLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKE 481 (893)
Q Consensus 402 ~~gl~~~~a~~~i~~~L~~~~~~~~~~~~~l~DW~ISRQr~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~g~~l~~ 481 (893)
+++.||+|..-||+|+|.=
T Consensus 240 ------------------------------l~pRCiTRDLkWGtpVPle------------------------------- 258 (567)
T KOG1247|consen 240 ------------------------------LKPRCITRDLKWGTPVPLE------------------------------- 258 (567)
T ss_pred ------------------------------ccccccccccccCCCcChh-------------------------------
Confidence 5678999999999999960
Q ss_pred cccccccccCCCCccceecCCcccccccccchhhhhcCCCccccCCChhhhhccCCceeeecchhhHHHHHHHHHHHHHH
Q psy2890 482 NKKFLHVSCPKCNKLAFRETDTMDTFVDSSWYYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTKL 561 (893)
Q Consensus 482 ~~~~~~~~c~~~g~~~~re~d~~D~WfdSsw~~~~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~~~~ 561 (893)
.-+..||+||||....|+..+... .+++.+|+-.- ||.-+
T Consensus 259 ----------------~fk~KVfYVWFDA~IGYlsit~~y-------t~ew~kWwknp------E~v~L----------- 298 (567)
T KOG1247|consen 259 ----------------KFKDKVFYVWFDAPIGYLSITKNY-------TDEWEKWWKNP------ENVEL----------- 298 (567)
T ss_pred ----------------hhcccEEEEEEcCcceEEEeehhh-------hHHHHHHhcCH------hhhhH-----------
Confidence 124469999999988887765432 25677777321 22110
Q ss_pred HHHhcCccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceeccccccccCCC
Q psy2890 562 MYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKN 641 (893)
Q Consensus 562 l~~~g~~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSKSkg 641 (893)
...+| ..+.||..|+..++.+|.. + +++-++-..+. +.....+ .|+|||+|
T Consensus 299 yqFmg--KDNVpFHtviFP~s~lgt~-------e-n~t~v~~l~aT----------eYLnyE~---------gKFSKSrg 349 (567)
T KOG1247|consen 299 YQFMG--KDNVPFHTVIFPCSQLGTE-------E-NYTVVHHLSAT----------EYLNYED---------GKFSKSRG 349 (567)
T ss_pred HHHhc--cCCCcceeeecchhhhcCC-------C-Cchhheeechh----------hhhcccc---------Cccccccc
Confidence 11122 5678999999999888632 1 11111111100 1111233 39999999
Q ss_pred CccCccchhh-hhCchhHHHHHHhcCCCCCCcccChhhhhHH--HHHHHHHHHHHHhhhhccc-cccccccccCCccccC
Q psy2890 642 NGIDPQTQIN-TYGADSTRLFIIFSAPPEKNLEWSDIGIEGA--YRFLNRVWNFSYILAPRII-NIINLNIFHNDFSVIK 717 (893)
Q Consensus 642 N~i~p~~ii~-~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~--~~~l~rl~n~~~~~~~~~~-~~~~~~~~~~~~~~~~ 717 (893)
-+|-..++.+ ..+++..|+||++..|..+|..|+++.+..- ...|+.|-|++.+++.... ....+. +.-.
T Consensus 350 vGvFG~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~NLGNFvNR~l~fv~~~~~g~V------p~~~ 423 (567)
T KOG1247|consen 350 VGVFGNDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNNLGNFVNRVLKFVAAKYNGVV------PEME 423 (567)
T ss_pred ccccccccccCCCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhCCcc------ccee
Confidence 9999999888 5899999999999999999999999976542 2344444444444332000 000110 1123
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccccCC------CCCcccHHHHHHHHHHHHHHh
Q psy2890 718 FNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIFNILERINSETKFDN------NKNTNNDILLYEGMSIFLRVL 791 (893)
Q Consensus 718 ~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fvn~l~~~~k~~~~~~------~~~~~~~~~l~~~l~~ll~LL 791 (893)
++.-|+.+++.++.+..+..++||.-..+.|++.+|++...-|.|++....++ ........+...++..+..||
T Consensus 424 ~~~~~~~~~~dv~~~~~~y~~~me~vklr~~l~~~m~is~~GNqylQ~~~~~k~~~~~r~r~~~vi~~a~nii~lvs~ll 503 (567)
T KOG1247|consen 424 LTSGDKKLLEDVNELLAKYVAAMEKVKLREALKTAMEISRRGNQYLQENTDNKLYEESRQRAGTVIGLAANIIYLVSVLL 503 (567)
T ss_pred ecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcccccchhhhcccccceeeehhhHHHHHHHHHh
Confidence 45558999999999999999999999999999999999998888876543221 112244566778888899999
Q ss_pred cccccchHHHHHHHhhc
Q psy2890 792 NPIAPHITHILWKELKY 808 (893)
Q Consensus 792 ~P~~P~isEEIwq~L~~ 808 (893)
+|+||.+|.+|..+|+-
T Consensus 504 ~P~mP~~s~~I~kqlnl 520 (567)
T KOG1247|consen 504 YPYMPTTSAEILKQLNL 520 (567)
T ss_pred ccccccchHHHHHHhCC
Confidence 99999999999999975
No 46
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=5.3e-45 Score=419.31 Aligned_cols=350 Identities=19% Similarity=0.249 Sum_probs=266.5
Q ss_pred CCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy2890 35 NGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQ 114 (893)
Q Consensus 35 ~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~ 114 (893)
+.++|++. |+|+|.+||||+|+|+..|+++||+|++||+|.+++|+|++|.+|..+|++.|.+|.++++++++.|+++
T Consensus 23 ~v~~yvcg--Ptvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~ 100 (463)
T PRK00260 23 KVKMYVCG--PTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHED 100 (463)
T ss_pred cceEEEeC--CccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 45666665 5566999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCC-cccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeece
Q psy2890 115 LSSLGL-AIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPM 193 (893)
Q Consensus 115 l~~lgi-~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~ 193 (893)
+++||| ..||. .+++ .|...+++++.+|+++|+||++.++|+||+..-.-. |
T Consensus 101 ~~~Lgi~~~d~~--~r~t--~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~~~y-------g---------------- 153 (463)
T PRK00260 101 MDALNVLPPDIE--PRAT--EHIPEIIELIERLIDKGHAYEADGDVYFDVRKFPDY-------G---------------- 153 (463)
T ss_pred HHHcCCCCCCcc--cccc--ccHHHHHHHHHHHHHCCCEEEecCeEEEeccccccc-------c----------------
Confidence 999999 56642 2232 588999999999999999999999999998652210 0
Q ss_pred eeEEecchHHHHHHHHHhhCCCChHHHHHHHHhhcccccceeeeeccccCCCCCCccccCCcEEEEEeccccccccccEE
Q psy2890 194 YYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFC 273 (893)
Q Consensus 194 ~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v 273 (893)
.|... ++.
T Consensus 154 ------------------~ls~~--~~~---------------------------------------------------- 161 (463)
T PRK00260 154 ------------------KLSGR--NLD---------------------------------------------------- 161 (463)
T ss_pred ------------------cCCCC--CHH----------------------------------------------------
Confidence 00000 000
Q ss_pred EECCCChHHHHHhhchHHHHHHHHHHhhcCccccccccccccccceEEEcCCCCCeeeEEEecccccCCCCCccccCCCC
Q psy2890 274 VISPEHPLAIFAARNNLLLQKFILEYKKNNNIESNNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAAIGVPAH 353 (893)
Q Consensus 274 ~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipv~~~~~V~~~~~GTG~~~~Pah 353 (893)
++ ..|. .+++ +++ -+
T Consensus 162 ------------------------~~----------------~~~~---------~~~~--~~~--------------K~ 176 (463)
T PRK00260 162 ------------------------EL----------------QAGA---------RVEV--AEE--------------KR 176 (463)
T ss_pred ------------------------HH----------------hccC---------cCCc--ccC--------------CC
Confidence 00 0010 0000 000 26
Q ss_pred CHHHHHHHHHcCCceeeeecCCCCCccccccccccccCCccccccCCCCCCCCHHHHHHHHHHHHHHcCCCCeeeEeeec
Q psy2890 354 NKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNKKNIFRLR 433 (893)
Q Consensus 354 ~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~~s~~~~gl~~~~a~~~i~~~L~~~~~~~~~~~~~l~ 433 (893)
++.||.+||+.+. | . .
T Consensus 177 ~~~DF~Lwk~~~~----------~---------------~--~------------------------------------- 192 (463)
T PRK00260 177 DPLDFALWKAAKP----------G---------------E--P------------------------------------- 192 (463)
T ss_pred CccccceecCCCC----------C---------------C--C-------------------------------------
Confidence 7788988876431 1 0 0
Q ss_pred ceeeccccccCCccCeEEcCCCCeeecCCCCCCccCCCccCCCCcccccccccccccCCCCccceecCCcccccccccch
Q psy2890 434 DWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKENKKFLHVSCPKCNKLAFRETDTMDTFVDSSWY 513 (893)
Q Consensus 434 DW~ISRQr~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~g~~l~~~~~~~~~~c~~~g~~~~re~d~~D~WfdSsw~ 513 (893)
-|- | .||.--|-||. .| |++.
T Consensus 193 ~w~-s---~~g~grpgWhi------------------------------------ec-------------------sam~ 213 (463)
T PRK00260 193 SWE-S---PWGKGRPGWHI------------------------------------EC-------------------SAMS 213 (463)
T ss_pred CCC-C---CCCCCCCChhH------------------------------------HH-------------------HHHH
Confidence 011 1 36766788873 23 4322
Q ss_pred hhhhcCCCccccCCChhhhhccCCceeeecchhhHHHHHHHHHHHHHHHHHhcCccCCCccceeeec-ceEeceeeeecc
Q psy2890 514 YMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQ-GMILNKTYYRIE 592 (893)
Q Consensus 514 ~~~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pfk~l~~~-G~v~~~~~~~~d 592 (893)
...++ -|+|+|.||+|+.++|.-.-.+.+. .+.+ .||.++++| |||.
T Consensus 214 ~~~lg-----------------~~~Dih~gG~DlifpHh~neiaqs~------a~~g-~p~~~~w~H~g~v~-------- 261 (463)
T PRK00260 214 TKYLG-----------------ETFDIHGGGADLIFPHHENEIAQSE------AATG-KPFANYWMHNGFVT-------- 261 (463)
T ss_pred HHhcC-----------------CCcceecCccccCCCchHhHHHHHH------HhcC-CCcceEEEEccEEc--------
Confidence 22222 2579999999998888543222221 1233 899999998 5654
Q ss_pred cCCCCccccCCCcccccccCCCCccceeeecCCCcceeccccccccCCCCccCccchhhhhCchhHHHHHHhcCCCCCCc
Q psy2890 593 NSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNL 672 (893)
Q Consensus 593 ~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~~~~~~~d~ 672 (893)
.+| +|||||+||+|+|.+++++||+|++|||+++ +++++++
T Consensus 262 -~~G-------------------------------------~KMSKS~GN~i~~~dll~~~~~d~lR~~ll~-~~~~~~~ 302 (463)
T PRK00260 262 -VNG-------------------------------------EKMSKSLGNFFTIRDLLKKYDPEVLRFFLLS-AHYRSPL 302 (463)
T ss_pred -cCC-------------------------------------CcccCcCCCCCCHHHHHHHcCchHhHHHHHh-CCCCCCC
Confidence 555 8999999999999999999999999999996 6899999
Q ss_pred ccChhhhhHHHHHHHHHHHHHHhhhhccccccccccccCCccccCCChhHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHH
Q psy2890 673 EWSDIGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDI-KRIQYNTVVSG 751 (893)
Q Consensus 673 ~~~~~~i~~~~~~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~-e~~~f~~ai~~ 751 (893)
+|+++.++.+.++++|+|+++.++.. ...|.|++++++.+++++.++| ++|+++.|++.
T Consensus 303 ~fs~~~l~~a~~~~~rl~~~~~~~~~--------------------~~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~ 362 (463)
T PRK00260 303 NFSEEALEQAKKALERLYNALAETAL--------------------GEDDEALLAELEEFKERFIEAMDDDFNTPEALAV 362 (463)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhh--------------------ccchhhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 99999999999999999999987642 1245788899999999999999 69999999999
Q ss_pred HHHHHHHHHHhhc
Q psy2890 752 CMKIFNILERINS 764 (893)
Q Consensus 752 l~~fvn~l~~~~k 764 (893)
|++|++.++.+..
T Consensus 363 l~~lv~~~n~~~~ 375 (463)
T PRK00260 363 LFELAREINRALE 375 (463)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998764
No 47
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=100.00 E-value=1e-41 Score=390.96 Aligned_cols=127 Identities=19% Similarity=0.176 Sum_probs=114.9
Q ss_pred CCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy2890 35 NGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQ 114 (893)
Q Consensus 35 ~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~ 114 (893)
+.++|++.| ||+|.+||||+|+++..|+++||+|++||+|.+++|+|++|.+|+.+|.++|++|.++++.+.+.++++
T Consensus 21 ~v~~yvcgp--tvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~d 98 (465)
T TIGR00435 21 KVKMYVCGP--TVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFED 98 (465)
T ss_pred cceEEEecC--ccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 566776654 777899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeec-eeeeecCCCC
Q psy2890 115 LSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKT-GIVNWDPIEK 166 (893)
Q Consensus 115 l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~-~~v~~~~~~~ 166 (893)
+++|||++|+ ++ +....|...+++++.+|+++|++|++. ..|+||+.|.
T Consensus 99 l~~LgI~~d~--~~-~raT~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~ 148 (465)
T TIGR00435 99 MKALNVLPPD--LE-PRATEHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKF 148 (465)
T ss_pred HHHhCCCCCc--CC-ccccccHHHHHHHHHHHHHCCCEEEecCCcEEEecccc
Confidence 9999999993 22 222379999999999999999999998 9999998773
No 48
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=100.00 E-value=4.9e-41 Score=396.48 Aligned_cols=369 Identities=18% Similarity=0.222 Sum_probs=272.4
Q ss_pred CcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHH-HcCCccccccccccccHHHHHHHHHcCCC-HHHHHHHHHHHHHH
Q psy2890 36 GKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMR-MNGYNVLMPMGWDAFGMPAENAAILNNTS-PAKWTYDNVSYMKK 113 (893)
Q Consensus 36 ~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r-~~G~~V~~~~G~D~~G~pie~~a~~~g~~-~~~~~~~~~~~~~~ 113 (893)
=++|+|.|.+| +.+||||||+|+..|++.||+| +.||+|.|++|+|++|.+|..+|.++|++ +.++++++.+.|.+
T Consensus 61 v~~Y~CGPTvY--d~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f~~ 138 (651)
T PTZ00399 61 VRWYTCGPTVY--DSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFFE 138 (651)
T ss_pred eEEEEeCCCcc--CCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 35777776666 9999999999999999999999 99999999999999999999999999999 99999999999999
Q ss_pred HHHHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeece
Q psy2890 114 QLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPM 193 (893)
Q Consensus 114 ~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~ 193 (893)
++++|||..+ .++.+. .+|...++.++.+|+++|++|.+...|
T Consensus 139 d~~~Lni~~p--~~~~r~-tehi~~ii~~i~~Li~~G~aY~~~gsv---------------------------------- 181 (651)
T PTZ00399 139 DMKALNVRPP--DVITRV-SEYVPEIVDFIQKIIDNGFAYESNGSV---------------------------------- 181 (651)
T ss_pred HHHHcCCCCC--ccccCc-CccHHHHHHHHHHHHHCCCEEEECCeE----------------------------------
Confidence 9999999998 444444 799999999999999999999875544
Q ss_pred eeEEecchHHHHHHHHHhhCCCChHHHHHHHHhhcccccceeeeeccccCCCCCCccccCCcEEEEEeccccccccccEE
Q psy2890 194 YYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFC 273 (893)
Q Consensus 194 ~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v 273 (893)
||++++|.+. ...+ ..|..| +...
T Consensus 182 -yFd~~~f~~~-~~~Y-g~L~p~--~~~~--------------------------------------------------- 205 (651)
T PTZ00399 182 -YFDVEAFRKA-GHVY-PKLEPE--SVAD--------------------------------------------------- 205 (651)
T ss_pred -EEEchhcccc-hhhH-HhhChh--hcCC---------------------------------------------------
Confidence 4445544433 1122 111100 0000
Q ss_pred EECCCChHHHHHhhchHHHHHHHHHHhhcCccccccccccccccceEEEcCCCCCeeeEEEecccccCCCCCc-c-ccC-
Q psy2890 274 VISPEHPLAIFAARNNLLLQKFILEYKKNNNIESNNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRA-A-IGV- 350 (893)
Q Consensus 274 ~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipv~~~~~V~~~~~GTG-~-~~~- 350 (893)
.. . ...|.| + -..
T Consensus 206 -------~~--------------------------------------------------------~-~~~g~~~l~~~~~ 221 (651)
T PTZ00399 206 -------ED--------------------------------------------------------R-IAEGEGALGKVSG 221 (651)
T ss_pred -------HH--------------------------------------------------------H-HhcccCCccccCc
Confidence 00 0 000111 0 000
Q ss_pred CCCCHHHHHHHHHcCCceeeeecCCCCCccccccccccccCCccccccCCCCCCCCHHHHHHHHHHHHHHcCCCCeeeEe
Q psy2890 351 PAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNKKNIF 430 (893)
Q Consensus 351 Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~~s~~~~gl~~~~a~~~i~~~L~~~~~~~~~~~~ 430 (893)
=..++.||.+|+.-. .| -
T Consensus 222 ~Kr~~~DFaLWk~~k----------pg---------------e------------------------------------- 239 (651)
T PTZ00399 222 EKRSPNDFALWKASK----------PG---------------E------------------------------------- 239 (651)
T ss_pred CCCCCccHHhhCCCC----------CC---------------C-------------------------------------
Confidence 135677888886532 11 0
Q ss_pred eecceeeccccccCCccCeEEcCCCCeeecCCCCCCccCCCccCCCCcccccccccccccCCCCccceecCCcccccccc
Q psy2890 431 RLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKENKKFLHVSCPKCNKLAFRETDTMDTFVDS 510 (893)
Q Consensus 431 ~l~DW~ISRQr~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~g~~l~~~~~~~~~~c~~~g~~~~re~d~~D~WfdS 510 (893)
. .|. -.||-.-|.||.+ | |
T Consensus 240 -p-~W~----SpwG~GrPGWHiE------------------------------------C-------------------s 258 (651)
T PTZ00399 240 -P-SWD----SPWGKGRPGWHIE------------------------------------C-------------------S 258 (651)
T ss_pred -C-CCC----CCCCCCCCCchHH------------------------------------H-------------------H
Confidence 0 033 2477777777642 2 3
Q ss_pred cchhhhhcCCCccccCCChhhhhccCCceeeecchhhHHHHHHHHHHHHHHHHHh-cCccCCCccceeeec-ceEeceee
Q psy2890 511 SWYYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTKLMYNL-GLIKFNEPFIRLLTQ-GMILNKTY 588 (893)
Q Consensus 511 sw~~~~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~~~~l~~~-g~~~~~~Pfk~l~~~-G~v~~~~~ 588 (893)
.+.--.++ .|+|+|.||.|+.++| |..-..+ ..+.+..||.+.++| |||.
T Consensus 259 am~~~~lg-----------------~~~DIh~gG~DL~FPH-------HeNEiAQseA~~~~~~~v~y~~H~G~L~---- 310 (651)
T PTZ00399 259 AMASNILG-----------------DPIDIHSGGIDLKFPH-------HDNELAQSEAYFDKHQWVNYFLHSGHLH---- 310 (651)
T ss_pred HHHHHHcC-----------------CcceeeccCCCCCCCc-------chhHHHHHHHhhCCCCCCcEEEEEEEEE----
Confidence 22111111 2689999999998888 3322222 234555699999999 9987
Q ss_pred eecccCCCCccccCCCcccccccCCCCccceeeecCCCcceeccccccccCCCCccCccchhhhhCchhHHHHHHhcCCC
Q psy2890 589 YRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPP 668 (893)
Q Consensus 589 ~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~~~~~ 668 (893)
.+| +|||||+||+|+|.+++++||+|++|||+|+. ++
T Consensus 311 -----i~G-------------------------------------~KMSKSLGNfItp~dlLekygaDaLR~~lLs~-~~ 347 (651)
T PTZ00399 311 -----IKG-------------------------------------LKMSKSLKNFITIRQALSKYTARQIRLLFLLH-KW 347 (651)
T ss_pred -----ecc-------------------------------------chhhhcCCCcccHHHHHHHcChHHHHHHHHhc-CC
Confidence 555 89999999999999999999999999999965 99
Q ss_pred CCCcccChhhhhHHHHHHHHHHHHHHhhhhccccccccccccCCccccCCChhHHHHHHHHHHHHHHHHHHH-hcCCHHH
Q psy2890 669 EKNLEWSDIGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDI-KRIQYNT 747 (893)
Q Consensus 669 ~~d~~~~~~~i~~~~~~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~-e~~~f~~ 747 (893)
+++++|+++.+..+.+..+++++++..+...... .... ....+...|++++..++.+...|.++| ++|+++.
T Consensus 348 ~~dldFS~e~l~~a~~~~~~l~n~~~rl~s~l~~-~~~~------~~~~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~ 420 (651)
T PTZ00399 348 DKPMNYSDESMDEAIEKDKVFFNFFANVKIKLRE-SELT------SPQKWTQHDFELNELFEETKSAVHAALLDNFDTPE 420 (651)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccc------ccccCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 9999999999999999999999987776431110 0010 111245678999999999999999999 8899999
Q ss_pred HHHHHHHHHHHHHHhhc
Q psy2890 748 VVSGCMKIFNILERINS 764 (893)
Q Consensus 748 ai~~l~~fvn~l~~~~k 764 (893)
|++.|++|++.+|.|+.
T Consensus 421 Al~~L~eLv~~~N~yi~ 437 (651)
T PTZ00399 421 ALQALQKLISATNTYLN 437 (651)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999874
No 49
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.1e-41 Score=373.95 Aligned_cols=125 Identities=16% Similarity=0.222 Sum_probs=114.6
Q ss_pred CCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy2890 35 NGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQ 114 (893)
Q Consensus 35 ~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~ 114 (893)
+-++|++.|.|| +.+||||+|+++..|+++||+|++|++|.+++|+|+||.+|+.+|+++|++|+++++++.+.+.++
T Consensus 9 ~v~~YvCGpTvY--~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d 86 (384)
T PRK12418 9 TATMYVCGITPY--DATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFRED 86 (384)
T ss_pred eeEEEecCCCCC--CCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 346787777777 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCC-cccccCccccCChhhHHHHHHHHHHHHhcCcceeece----eeeecCCC
Q psy2890 115 LSSLGL-AIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTG----IVNWDPIE 165 (893)
Q Consensus 115 l~~lgi-~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~----~v~~~~~~ 165 (893)
+++||| ++| .+.+|++ +.+.++.++.+|.++|+||++.. .|||+...
T Consensus 87 ~~~Lni~~~~--~~~raTe--~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~ 138 (384)
T PRK12418 87 MEALRVLPPR--DYVGAVE--SIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDA 138 (384)
T ss_pred HHHhCCCCCC--ccccCCC--CHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCc
Confidence 999997 666 6777776 48999999999999999999998 79999754
No 50
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=100.00 E-value=2.4e-41 Score=374.56 Aligned_cols=125 Identities=18% Similarity=0.237 Sum_probs=113.8
Q ss_pred CCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy2890 35 NGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQ 114 (893)
Q Consensus 35 ~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~ 114 (893)
+-++|++.|.|| +.+||||+|+++..|+++||+|++||+|.|++|+|+||.+|+.+|+++|++++++++++.+.++++
T Consensus 36 ~v~~YvCGpTvY--~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d 113 (411)
T TIGR03447 36 EAGMYVCGITPY--DATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFRED 113 (411)
T ss_pred cceEEEeCCccC--CCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 456788887777 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCc-ccccCccccCChhhHHHHHHHHHHHHhcCcceeece----eeeecCCC
Q psy2890 115 LSSLGLA-IDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTG----IVNWDPIE 165 (893)
Q Consensus 115 l~~lgi~-~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~----~v~~~~~~ 165 (893)
+++|||. +| .+.+|++. .+.+++++.+|+++|+||++.. .|||+...
T Consensus 114 ~~~Lni~~~d--~~~RaTe~--i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~ 165 (411)
T TIGR03447 114 MEALRVLPPR--DYIGAVES--IDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEA 165 (411)
T ss_pred HHHcCCCCCC--cccCCCCC--HHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccc
Confidence 9999986 55 56666655 7999999999999999998886 68988753
No 51
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7e-40 Score=375.37 Aligned_cols=125 Identities=17% Similarity=0.152 Sum_probs=115.7
Q ss_pred EEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q psy2890 38 FYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSS 117 (893)
Q Consensus 38 ~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 117 (893)
.-++..-|+|.+.+||||+|+++..|+++||+|+.||+|.+++|+|+||.+|..+|+++|+++.++++++.+.+.+++++
T Consensus 249 V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~d~~~ 328 (699)
T PRK14535 249 VRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHEDADA 328 (699)
T ss_pred eEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 34455567788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeec-eeeeecCCC
Q psy2890 118 LGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKT-GIVNWDPIE 165 (893)
Q Consensus 118 lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~-~~v~~~~~~ 165 (893)
|||..+ .+.|..++|...++.++.+|+++|+||++. ..||||+.+
T Consensus 329 LnI~~p---~~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~ 374 (699)
T PRK14535 329 LGVLRP---DIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVRE 374 (699)
T ss_pred cCCCCC---cEeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEeccc
Confidence 999999 457888899999999999999999999874 589999864
No 52
>PLN02946 cysteine-tRNA ligase
Probab=100.00 E-value=3.4e-40 Score=377.60 Aligned_cols=359 Identities=17% Similarity=0.175 Sum_probs=263.4
Q ss_pred cEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy2890 37 KFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLS 116 (893)
Q Consensus 37 ~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~ 116 (893)
+.|++ -|+|.|.+||||+|+++..|+++||+|+.||+|.|++|+|+||.+|..+|+++|+++.++++++++.+.++++
T Consensus 82 ~~Y~C--GpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d~~ 159 (557)
T PLN02946 82 GMYVC--GVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSDMA 159 (557)
T ss_pred eEEEe--CCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 44555 5788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeE
Q psy2890 117 SLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYA 196 (893)
Q Consensus 117 ~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~ 196 (893)
+|||.. .++.|..++|...++.++.+|+++|++|.+.+.||||+..-. + .
T Consensus 160 ~LnI~~---p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~f~---~----Y-------------------- 209 (557)
T PLN02946 160 YLHCLP---PSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDKFP---E----Y-------------------- 209 (557)
T ss_pred HCCCCC---CCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCcch---h----h--------------------
Confidence 999984 478899999999999999999999999999999999975311 0 0
Q ss_pred EecchHHHHHHHHHhhCCCChHHHHHHHHhhcccccceeeeeccccCCCCCCccccCCcEEEEEeccccccccccEEEEC
Q psy2890 197 KITNYAEELLEYVKKKLPYWPKKVRLMQVNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVIS 276 (893)
Q Consensus 197 ~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~ 276 (893)
..|.. -.+.
T Consensus 210 --------------G~Ls~----------------------~~l~----------------------------------- 218 (557)
T PLN02946 210 --------------GKLSG----------------------RKLE----------------------------------- 218 (557)
T ss_pred --------------hhcCC----------------------CChh-----------------------------------
Confidence 01100 0000
Q ss_pred CCChHHHHHhhchHHHHHHHHHHhhcCccccccccccccccceEEEcCCCCCeeeEEEecccccCCCCCccccCCCCCHH
Q psy2890 277 PEHPLAIFAARNNLLLQKFILEYKKNNNIESNNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAAIGVPAHNKH 356 (893)
Q Consensus 277 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipv~~~~~V~~~~~GTG~~~~Pah~~~ 356 (893)
+. ..|.. +. ++ . =-.++.
T Consensus 219 ---------------------~l----------------~~g~r---------v~------~~-~---------~K~np~ 236 (557)
T PLN02946 219 ---------------------DN----------------RAGER---------VA------VD-S---------RKKNPA 236 (557)
T ss_pred ---------------------Hh----------------hcCCC---------CC------cc-c---------ccCCcc
Confidence 00 00100 00 00 0 025778
Q ss_pred HHHHHHHcCCceeeeecCCCCCccccccccccccCCccccccCCCCCCCCHHHHHHHHHHHHHHcCCCCeeeEeeeccee
Q psy2890 357 DFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNKKNIFRLRDWA 436 (893)
Q Consensus 357 D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~~s~~~~gl~~~~a~~~i~~~L~~~~~~~~~~~~~l~DW~ 436 (893)
||.+||+.+ .|. . -|
T Consensus 237 DFaLWK~~k----------~ge--------------~----------------------------------------~W- 251 (557)
T PLN02946 237 DFALWKAAK----------EGE--------------P----------------------------------------FW- 251 (557)
T ss_pred ccceeccCC----------CCC--------------C----------------------------------------Cc-
Confidence 898888643 110 0 01
Q ss_pred eccccccCCccCeEEcCCCCeeecCCCCCCccCCCccCCCCcccccccccccccCCCCccceecCCcccccccccchhhh
Q psy2890 437 ISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKENKKFLHVSCPKCNKLAFRETDTMDTFVDSSWYYMR 516 (893)
Q Consensus 437 ISRQr~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~g~~l~~~~~~~~~~c~~~g~~~~re~d~~D~WfdSsw~~~~ 516 (893)
.-.||.--|-||. .| |+|....
T Consensus 252 ---~SPWG~GRPGWHI------------------------------------EC-------------------SaMs~~~ 273 (557)
T PLN02946 252 ---DSPWGPGRPGWHI------------------------------------EC-------------------SAMSAAY 273 (557)
T ss_pred ---cCCCCCCCCcHHH------------------------------------HH-------------------HHHHHHH
Confidence 2248888899884 33 5443322
Q ss_pred hcCCCccccCCChhhhhccCCceeeecchhhHHHHHHHHHHHHHHHHHhcCccCCCccceeeec-ceEeceeeeecccCC
Q psy2890 517 YISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQ-GMILNKTYYRIENSS 595 (893)
Q Consensus 517 ~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pfk~l~~~-G~v~~~~~~~~d~~~ 595 (893)
++. +.|+|.||.|+.++|- ..-..+.-.....||.+.|+| |||+ .+
T Consensus 274 lG~-----------------~~DIH~GG~DL~FPHH-------ENEiAQsea~~g~~~a~yW~H~G~v~---------~~ 320 (557)
T PLN02946 274 LGH-----------------SFDIHGGGMDLVFPHH-------ENEIAQSCAACCDSNISYWIHNGFVT---------VD 320 (557)
T ss_pred cCC-----------------CeeEeccccccCCCcc-------cchHHHHHHHhCCCCCceeeEeeEEE---------eC
Confidence 222 3699999999988883 322222221234566655555 9997 55
Q ss_pred CCccccCCCcccccccCCCCccceeeecCCCcceeccccccccCCCCccCccchhhhhCchhHHHHHHhcCCCCCCcccC
Q psy2890 596 NKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWS 675 (893)
Q Consensus 596 G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~~ 675 (893)
| +|||||+||+|++.+++++||+|++|||+++ ++++++++|+
T Consensus 321 G-------------------------------------~KMSKSlGN~itl~dll~~y~~dalR~~lLs-~hyr~~l~fs 362 (557)
T PLN02946 321 S-------------------------------------EKMSKSLGNFFTIRQVIDLYHPLALRLFLLG-THYRSPINYS 362 (557)
T ss_pred C-------------------------------------CCcCCcCCCcCCHHHHHHhcCccceeeeeec-cCCCCCcEec
Confidence 5 8999999999999999999999999999996 5799999999
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhccccccccccccCCccccCCChhHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHH
Q psy2890 676 DIGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDI-KRIQYNTVVSGCMK 754 (893)
Q Consensus 676 ~~~i~~~~~~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~-e~~~f~~ai~~l~~ 754 (893)
++.++.+.+-+.++++++..+...... ... .... ...+..+...+..+.+.+.++| ++|+++.|++.|++
T Consensus 363 ~e~L~~a~~~l~~l~~~~~~~~~~l~~--~~~------~~~~-~~~~~~~~~~~~~~~~~f~~Al~DDlntp~Al~~l~~ 433 (557)
T PLN02946 363 DVQLESASERIFYIYQTLHDCEESLQQ--HDS------TFEK-DSVPPDTLNCINKFHDEFVTSMSDDLHTPVALAALSE 433 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh--hcc------cccc-cccchhhHHHHHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 999999998888888887776431110 000 0000 0011122345567778999999 88999999999999
Q ss_pred HHHHHHHhh
Q psy2890 755 IFNILERIN 763 (893)
Q Consensus 755 fvn~l~~~~ 763 (893)
+++.+|.+.
T Consensus 434 ~vk~~N~~~ 442 (557)
T PLN02946 434 PLKTINDLL 442 (557)
T ss_pred HHHHHHHHh
Confidence 999998765
No 53
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A ....
Probab=100.00 E-value=7.5e-40 Score=325.52 Aligned_cols=181 Identities=44% Similarity=0.641 Sum_probs=139.0
Q ss_pred HhhcccccceeeeeccccCCCCCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhchHHHHHHHHHHhhcCc
Q psy2890 225 VNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYKKNNN 304 (893)
Q Consensus 225 ~~wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (893)
|||||||.|+.|+|++.+. +..|.|||||||||+|++||||+|+||++..++..+..+++|++++.....
T Consensus 1 rNWIGkS~G~~i~F~i~~~----------~~~i~vFTTrpdTifGvtfials~~H~lv~~l~~~~~~l~~fi~~~~~~~~ 70 (185)
T PF13603_consen 1 RNWIGKSEGAEIDFKIKGS----------NEKIEVFTTRPDTIFGVTFIALSPEHPLVKKLAENNPELQEFIEKCKKIKN 70 (185)
T ss_dssp HHHH-EEEEEEEEEEBTTS----------SCEEEEEES-GGGGGG--EEEEETTSCHHHHCTTTHHHHHHHHHHHHTS-H
T ss_pred CCCcCCcccEEEEEEecCC----------CCEEEEEECCcchhhCceEEEECCCCHHHHhhhhhhhhHHHHHHHHhcCCH
Confidence 7999999999999999843 468999999999999999999999999999999999999999999887665
Q ss_pred ccc--ccccccccccceEEEcCCCCCeeeEEEecccccCCCCCcc-ccCCCCCHHHHHHHHHcCCceeeeecCCCCCccc
Q psy2890 305 IES--NNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAA-IGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSD 381 (893)
Q Consensus 305 ~~~--~~~~~~g~~~g~~~~~P~~~~~ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~ 381 (893)
.++ ...++.|.++|.+++||++++++|||+++||. ++||||| |+|||||++||+||++||||+.+||.+.++. ..
T Consensus 71 ~~~~~~~~~k~Gv~tg~~aihP~t~~~iPI~va~yVl-~~yGtgAVmgvPahD~rD~~FAk~~~lpi~~Vi~~~~~~-~~ 148 (185)
T PF13603_consen 71 SERNKDFKEKEGVFTGLYAIHPLTGKKIPIYVANYVL-MDYGTGAVMGVPAHDERDFEFAKKYNLPIKQVIKPKDDN-EE 148 (185)
T ss_dssp HHHHHCSSS--EEEEEEEEE-TTTS-EEEEEEETTS--TTSTTSEEEE-CCC-HHHHHHHHHHT------EEBSSSS---
T ss_pred hHhhhhccccccCcCCCEEECCCCCCCccEEEECcee-ecCCcceEEEcCCCCHHHHHHHHHcCCCeeEEEcCCCCc-cc
Confidence 443 34568899999999999999999999999999 9999999 9999999999999999999999999873332 11
Q ss_pred cc-cccccccCCccccccCCCCCCCCHHHHHHHHHHHHH
Q psy2890 382 KI-WKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLI 419 (893)
Q Consensus 382 ~~-~~~~~~~~g~~~~~~s~~~~gl~~~~a~~~i~~~L~ 419 (893)
++ ...+|+++|+ |+|||+|+||+..+|+++|++.|+
T Consensus 149 ~~~~~~~~~~~G~--l~nS~~f~Gl~~~eA~~~I~~~Le 185 (185)
T PF13603_consen 149 IDNKQEAYTGDGI--LINSGEFNGLSSKEAREKIIKKLE 185 (185)
T ss_dssp -STTSS---S--E--E-SSGGGTTSBHHHHHHHHHHHHH
T ss_pred ccccccCcCCCEE--EEeCCCCCCCCHHHHHHHHHHHhC
Confidence 11 1678999999 999999999999999999999986
No 54
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.1e-38 Score=362.00 Aligned_cols=124 Identities=18% Similarity=0.165 Sum_probs=115.2
Q ss_pred EEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCcccccc----------ccccccHHHHHHHHHcCCCHHHHHHHH
Q psy2890 38 FYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPM----------GWDAFGMPAENAAILNNTSPAKWTYDN 107 (893)
Q Consensus 38 ~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~----------G~D~~G~pie~~a~~~g~~~~~~~~~~ 107 (893)
.-++..-|+|++.+||||+|+|+..|+++||+|++||+|.|++ |.|+||.+|..+|.++|+++.++++++
T Consensus 24 v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a~~~ 103 (490)
T PRK14536 24 VRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIAAHY 103 (490)
T ss_pred eEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHHHHH
Confidence 4445556888899999999999999999999999999999997 899999999999999999999999999
Q ss_pred HHHHHHHHHHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeeeecCC
Q psy2890 108 VSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPI 164 (893)
Q Consensus 108 ~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~ 164 (893)
++.+.+++++|||.++ . +.|..++|...++.++.+|+++|+||++...||||+.
T Consensus 104 ~~~f~~d~~~Lni~~~--~-~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~ 157 (490)
T PRK14536 104 TAAFFRDTARLNIERP--S-IVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIR 157 (490)
T ss_pred HHHHHHHHHHcCCCCC--c-eecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCC
Confidence 9999999999999997 3 4477899999999999999999999999999999984
No 55
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.9e-37 Score=346.64 Aligned_cols=125 Identities=17% Similarity=0.158 Sum_probs=113.8
Q ss_pred EEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCcccc---------cccc-ccccHHHHHHHHHcCCCHHHHHHHH
Q psy2890 38 FYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLM---------PMGW-DAFGMPAENAAILNNTSPAKWTYDN 107 (893)
Q Consensus 38 ~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~---------~~G~-D~~G~pie~~a~~~g~~~~~~~~~~ 107 (893)
.-++..-|+|...+||||+|+++..|+++||+|++||+|.+ ++|. |+||.+|..+|.++|+++.++++++
T Consensus 22 v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a~~~ 101 (481)
T PRK14534 22 VKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISRFF 101 (481)
T ss_pred eEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHHHHH
Confidence 34455567888999999999999999999999999999999 6777 6668899999999999999999999
Q ss_pred HHHHHHHHHHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeeeecCCC
Q psy2890 108 VSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIE 165 (893)
Q Consensus 108 ~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~ 165 (893)
.+.+.+++++|||.+| .++.| .++|.+.++.++.+|+++|+||.....||||+.+
T Consensus 102 ~~~f~~d~~~Lni~~~--~~~p~-atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~ 156 (481)
T PRK14534 102 TEAFFDDCKKLNIVYP--DKVLV-ASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSC 156 (481)
T ss_pred HHHHHHHHHHcCCCCC--ceecC-ccchHHHHHHHHHHHHHCCCEEEECCeEEEeccc
Confidence 9999999999999999 55554 6899999999999999999999999999999876
No 56
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.2e-36 Score=329.61 Aligned_cols=347 Identities=20% Similarity=0.223 Sum_probs=262.6
Q ss_pred EEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q psy2890 38 FYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSS 117 (893)
Q Consensus 38 ~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 117 (893)
.-++.--|+|....||||+|+++..|++.||++..||.|.|+..+.+-..+|...|.+.|.++.++++++++.+.++++.
T Consensus 23 V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f~~D~~a 102 (464)
T COG0215 23 VKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFEDMDA 102 (464)
T ss_pred EEEEecCCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 33344457788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc-cccCccccCChhhHHHHHHHHHHHHhcCcceee-ceeeeecCCCCcccccchhccCcccCCCcccEEEeeceee
Q psy2890 118 LGLAI-DWSREIITCSPKYYKWNQWIFLKMFKRGIIYKK-TGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYY 195 (893)
Q Consensus 118 lgi~~-Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~-~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~ 195 (893)
|||.. | ..+...+|...+.++..+|.++|++|.. ...|||++..-. +
T Consensus 103 L~v~~p~----~~PraTe~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f~---~------------------------ 151 (464)
T COG0215 103 LNVLPPD----IEPRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFK---D------------------------ 151 (464)
T ss_pred hCCCCCc----ccCcHhhCHHHHHHHHHHHHHCCceEEecCCcEEEecccch---h------------------------
Confidence 99954 5 4466679999999999999999999998 579999985411 0
Q ss_pred EEecchHHHHHHHHHhhCCCChHHHHHHHHhhcccccceeeeeccccCCCCCCccccCCcEEEEEeccccccccccEEEE
Q psy2890 196 AKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVI 275 (893)
Q Consensus 196 ~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v 275 (893)
+ ..|..+ ..
T Consensus 152 -------------Y-G~LS~~--------------------------~~------------------------------- 160 (464)
T COG0215 152 -------------Y-GKLSGR--------------------------DS------------------------------- 160 (464)
T ss_pred -------------h-HhhcCC--------------------------CC-------------------------------
Confidence 0 011000 00
Q ss_pred CCCChHHHHHhhchHHHHHHHHHHhhcCccccccccccccccceEEEcCCCCCeeeEEEecccccCCCCCccccCCCCCH
Q psy2890 276 SPEHPLAIFAARNNLLLQKFILEYKKNNNIESNNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAAIGVPAHNK 355 (893)
Q Consensus 276 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipv~~~~~V~~~~~GTG~~~~Pah~~ 355 (893)
+.+ . ..|..+ . ...--.++
T Consensus 161 ----------------le~----l----------------~~gar~---------~----------------~~~~Krnp 179 (464)
T COG0215 161 ----------------LEE----L----------------QAGARV---------E----------------VDEEKRNP 179 (464)
T ss_pred ----------------hhH----H----------------hhcccc---------c----------------cccccCCc
Confidence 000 0 000000 0 00002577
Q ss_pred HHHHHHHHcCCceeeeecCCCCCccccccccccccCCccccccCCCCCCCCHHHHHHHHHHHHHHcCCCCeeeEeeecce
Q psy2890 356 HDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNKKNIFRLRDW 435 (893)
Q Consensus 356 ~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~~s~~~~gl~~~~a~~~i~~~L~~~~~~~~~~~~~l~DW 435 (893)
.||.+||..+ .| .
T Consensus 180 ~DFvLWK~sk----------~g---------------E------------------------------------------ 192 (464)
T COG0215 180 LDFVLWKAAK----------PG---------------E------------------------------------------ 192 (464)
T ss_pred hhheeeccCC----------CC---------------C------------------------------------------
Confidence 8888888643 12 1
Q ss_pred eeccccccCCccCeEEcCCCCeeecCCCCCCccCCCccCCCCcccccccccccccCCCCccceecCCcccccccccchhh
Q psy2890 436 AISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKENKKFLHVSCPKCNKLAFRETDTMDTFVDSSWYYM 515 (893)
Q Consensus 436 ~ISRQr~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~g~~l~~~~~~~~~~c~~~g~~~~re~d~~D~WfdSsw~~~ 515 (893)
.|-.-.||.--|.||. .| |+|...
T Consensus 193 -p~W~SPWG~GRPGWHI------------------------------------EC-------------------SaM~~~ 216 (464)
T COG0215 193 -PSWDSPWGKGRPGWHI------------------------------------EC-------------------SAMSTK 216 (464)
T ss_pred -CCCCCCCCCCCCchhH------------------------------------HH-------------------HHHHHH
Confidence 0223357777799984 33 555444
Q ss_pred hhcCCCccccCCChhhhhccCCceeeecchhhHHHHHHHHHHHHHHHHHhcC-ccCCCccceeeec-ceEeceeeeeccc
Q psy2890 516 RYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGL-IKFNEPFIRLLTQ-GMILNKTYYRIEN 593 (893)
Q Consensus 516 ~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~-~~~~~Pfk~l~~~-G~v~~~~~~~~d~ 593 (893)
.++.. .|+|.||.|++++| |..-.++.- ..+..||.+.|+| |||.
T Consensus 217 ~LG~~-----------------~DIHgGG~DLiFPH-------HENEiAQsea~~g~~~~a~yWmH~G~l~--------- 263 (464)
T COG0215 217 YLGET-----------------FDIHGGGSDLIFPH-------HENEIAQSEAATGVKPFAKYWMHNGFLN--------- 263 (464)
T ss_pred HhCCC-----------------cceecCcccccCCC-------cccHHHHHHhhhCCCcceeEeEEcceee---------
Confidence 44433 49999999998888 554444443 4555999999998 9997
Q ss_pred CCCCccccCCCcccccccCCCCccceeeecCCCcceeccccccccCCCCccCccchhhhhCchhHHHHHHhcCCCCCCcc
Q psy2890 594 SSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLE 673 (893)
Q Consensus 594 ~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~~~~~~~d~~ 673 (893)
.+| +|||||+||+++..+++++|++.+|||+|++ ++++++++
T Consensus 264 i~g-------------------------------------eKMSKSLGNfiti~d~l~~~~p~~lR~~lls-~HYR~pl~ 305 (464)
T COG0215 264 IDG-------------------------------------EKMSKSLGNFITVRDLLKKYDPEVLRLFLLS-SHYRSPLD 305 (464)
T ss_pred ecC-------------------------------------cCcccccCCeeEHHHHHhhcCHHHHHHHHHH-HHhCCccc
Confidence 666 8999999999999999999999999999995 58999999
Q ss_pred cChhhhhHHHHHHHHHHHHHHhhhhccccccccccccCCccccCCChhHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHH
Q psy2890 674 WSDIGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDI-KRIQYNTVVSGC 752 (893)
Q Consensus 674 ~~~~~i~~~~~~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~-e~~~f~~ai~~l 752 (893)
||++.|+.+.+.+.||++++..+.. .. ... ... ...++..++.++| ++|+++.|++.|
T Consensus 306 fsee~L~~A~~~l~rl~~~~~~~~~-~~--~~~----------~~~--------~~~~~~~~f~~al~DDfnt~~al~~l 364 (464)
T COG0215 306 FSEELLEEAKKALERLYNALRRLRD-LA--GDA----------ELA--------DLKEFEARFREALDDDFNTPKALAVL 364 (464)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHh-hc--ccc----------ccc--------hhHHHHHHHHHHHHhccCcHHHHHHH
Confidence 9999999999999999999987653 11 000 001 3556777799999 899999999999
Q ss_pred HHHHHHHHHh
Q psy2890 753 MKIFNILERI 762 (893)
Q Consensus 753 ~~fvn~l~~~ 762 (893)
.+++...+..
T Consensus 365 ~~l~~~~~~~ 374 (464)
T COG0215 365 FELAKEINRL 374 (464)
T ss_pred HHHHHHHhhh
Confidence 9999877544
No 57
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.97 E-value=8.2e-33 Score=291.44 Aligned_cols=124 Identities=19% Similarity=0.225 Sum_probs=105.2
Q ss_pred EEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q psy2890 38 FYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSS 117 (893)
Q Consensus 38 ~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 117 (893)
.-++..-|+|...+||||+|+|+..|++.||++..||+|.+++++.+.+.+|..+|.+.|+++.+++.++.+.+.++|++
T Consensus 9 v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~dm~~ 88 (300)
T PF01406_consen 9 VRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFEDMKA 88 (300)
T ss_dssp EEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHHHHHH
Confidence 34444456777999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeec-eeeeecCC
Q psy2890 118 LGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKT-GIVNWDPI 164 (893)
Q Consensus 118 lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~-~~v~~~~~ 164 (893)
|||... ...+...+|...+..+..+|+++|++|... +.|||+..
T Consensus 89 Lnv~~p---~~~prate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~ 133 (300)
T PF01406_consen 89 LNVLPP---DHYPRATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVS 133 (300)
T ss_dssp TT-------SEEEEGGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CC
T ss_pred cCCCCC---ccccchhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeec
Confidence 999886 455677799999999999999999999999 99999985
No 58
>KOG2007|consensus
Probab=99.97 E-value=5.8e-30 Score=276.89 Aligned_cols=362 Identities=19% Similarity=0.209 Sum_probs=266.1
Q ss_pred EEEEecCCCCCCcCcchHHHhHHHHHHHHHHHH-HcCCccccccccccccHHHHHHHHH--cCCCHHHHHH---HHHHHH
Q psy2890 38 FYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMR-MNGYNVLMPMGWDAFGMPAENAAIL--NNTSPAKWTY---DNVSYM 111 (893)
Q Consensus 38 ~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r-~~G~~V~~~~G~D~~G~pie~~a~~--~g~~~~~~~~---~~~~~~ 111 (893)
.-.+.--|++...-||||||+|+-.||+.|+++ .-||+|.|++++.+.+.+|...|.+ -+..|..|.+ .+.+.+
T Consensus 56 v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~m~e~~~~l~~~F~~~e~eF 135 (586)
T KOG2007|consen 56 VTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEEMGEKPLSLSERFCYYEEEF 135 (586)
T ss_pred EEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhhhccchhhHHHHHHHHHHHH
Confidence 333445688999999999999999999999999 8999999999999999999999962 2344443333 467999
Q ss_pred HHHHHHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEee
Q psy2890 112 KKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKI 191 (893)
Q Consensus 112 ~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~ 191 (893)
.++|.+|++... ...|.-.+|...+..++++++++|++|..+..||||...-.
T Consensus 136 ~~DM~~LnvLpP---tv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~kf~------------------------ 188 (586)
T KOG2007|consen 136 LQDMAALNVLPP---TVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDKFP------------------------ 188 (586)
T ss_pred HHHHHHhCCCCC---cccchhhhchHHHHHHHHHHHhCCceeeeCCcEEEeccccc------------------------
Confidence 999999999887 67788889999999999999999999999999999974311
Q ss_pred ceeeEEecchHHHHHHHHHhhCCCChHHHHHHHHhhcccccceeeeeccccCCCCCCccccCCcEEEEEecccccccccc
Q psy2890 192 PMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGIT 271 (893)
Q Consensus 192 ~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~ 271 (893)
+-| ..|. | +.+
T Consensus 189 -~~Y---------------gKL~--------------G-------------~~~-------------------------- 199 (586)
T KOG2007|consen 189 -HSY---------------GKLV--------------G-------------QRK-------------------------- 199 (586)
T ss_pred -chh---------------hhhc--------------C-------------chh--------------------------
Confidence 000 0000 0 000
Q ss_pred EEEECCCChHHHHHhhchHHHHHHHHHHhhcCccccccccccccccceEEEcCCCCCeeeEEEecccccCCCCCccccCC
Q psy2890 272 FCVISPEHPLAIFAARNNLLLQKFILEYKKNNNIESNNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAAIGVP 351 (893)
Q Consensus 272 ~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipv~~~~~V~~~~~GTG~~~~P 351 (893)
......|.+. + . -
T Consensus 200 ------------------------------------~~~~gEg~l~---------------------d-s---------~ 212 (586)
T KOG2007|consen 200 ------------------------------------NLQEGEGVLS---------------------D-S---------R 212 (586)
T ss_pred ------------------------------------hcccCcCccc---------------------c-c---------c
Confidence 0000001110 0 0 1
Q ss_pred CCCHHHHHHHHHcCCceeeeecCCCCCccccccccccccCCccccccCCCCCCCCHHHHHHHHHHHHHHcCCCCeeeEee
Q psy2890 352 AHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNKKNIFR 431 (893)
Q Consensus 352 ah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~~s~~~~gl~~~~a~~~i~~~L~~~~~~~~~~~~~ 431 (893)
-..+.||.+||.-+ .|+ .
T Consensus 213 KR~p~DFALWKAsK----------~gE-------P--------------------------------------------- 230 (586)
T KOG2007|consen 213 KRSPADFALWKASK----------PGE-------P--------------------------------------------- 230 (586)
T ss_pred CCChhhhhhhhhcC----------CCC-------C---------------------------------------------
Confidence 14678999998754 221 0
Q ss_pred ecceeeccccccCCccCeEEcCCCCeeecCCCCCCccCCCccCCCCcccccccccccccCCCCccceecCCccccccccc
Q psy2890 432 LRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKENKKFLHVSCPKCNKLAFRETDTMDTFVDSS 511 (893)
Q Consensus 432 l~DW~ISRQr~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~g~~l~~~~~~~~~~c~~~g~~~~re~d~~D~WfdSs 511 (893)
|---.||.--|.||.+ | |.
T Consensus 231 ------~WeSPWG~GRPGWHIE------------------------------------C-------------------Sa 249 (586)
T KOG2007|consen 231 ------SWESPWGKGRPGWHIE------------------------------------C-------------------SA 249 (586)
T ss_pred ------CCCCCCCCCCCCceee------------------------------------e-------------------HH
Confidence 1223588888999843 2 33
Q ss_pred chhhhhcCCCccccCCChhhhhccCCceeeecchhhHHHHHHHHHHHHHH-HHHhcCccCCCccceeeec-ceEeceeee
Q psy2890 512 WYYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTKL-MYNLGLIKFNEPFIRLLTQ-GMILNKTYY 589 (893)
Q Consensus 512 w~~~~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~~~~-l~~~g~~~~~~Pfk~l~~~-G~v~~~~~~ 589 (893)
+.-..++. ..|+|.||+|.+++| |.. +..+.....++++-+.+.| |++.
T Consensus 250 Mas~~lG~-----------------~lDIH~GG~DL~FPH-------HeNEiAQ~eA~~~~~~wVnYflHtGhL~----- 300 (586)
T KOG2007|consen 250 MASAILGS-----------------QLDIHGGGIDLAFPH-------HENEIAQSEAAFDDSQWVNYFLHTGHLT----- 300 (586)
T ss_pred HHHHhhcc-----------------ccceecCcccccCCC-------cccHHHHHHHHhcCCccceeEEEcCeee-----
Confidence 32222221 149999999998887 332 3333333344556666666 9987
Q ss_pred ecccCCCCccccCCCcccccccCCCCccceeeecCCCcceeccccccccCCCCccCccchhhhhCchhHHHHHHhcCCCC
Q psy2890 590 RIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPE 669 (893)
Q Consensus 590 ~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~~~~~~ 669 (893)
.+| +|||||++|+|+..+++++|.+++||+++|.+ .+.
T Consensus 301 ----i~g-------------------------------------~KMSKSLkNFiTIke~Lk~~sp~qLRl~fl~~-~wr 338 (586)
T KOG2007|consen 301 ----ING-------------------------------------EKMSKSLKNFITIKEALKKYSPRQLRLAFLLH-QWR 338 (586)
T ss_pred ----ecc-------------------------------------chhhhhhccceeHHHHHHhcCHHHHHHHHHHH-Hhc
Confidence 555 89999999999999999999999999999965 799
Q ss_pred CCcccChhhhhHHHHHHHHHHHHHHhhhhccccccccccccCCccccCCChhHHHHHHHHHHHHHHHHHHH-hcCCHHHH
Q psy2890 670 KNLEWSDIGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDI-KRIQYNTV 748 (893)
Q Consensus 670 ~d~~~~~~~i~~~~~~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~-e~~~f~~a 748 (893)
++++|+++.++.+..+.+.+.|++..+.. +... .+ ....+.+.+..++.++..+..+|..++ ++++...+
T Consensus 339 ~~ldYs~s~m~~a~q~e~~~~~ff~~~~a-l~~~--~~------~~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v 409 (586)
T KOG2007|consen 339 SPLDYSDSTMEQALQLEKSLNNFFLDVKA-LLRG--AK------PFEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRV 409 (586)
T ss_pred CcCCchHHHHHHHHHHHHHHHHHHHHHHH-HHhc--cc------hhhccChHHHHHHHhhhhHHHHHHHHHHhccccHHH
Confidence 99999999999999998888888766544 2111 10 234677889999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHHhhcc
Q psy2890 749 VSGCMKIFNILERINSE 765 (893)
Q Consensus 749 i~~l~~fvn~l~~~~k~ 765 (893)
++.+.++++..|.++..
T Consensus 410 ~~~~~~lvs~~N~~i~~ 426 (586)
T KOG2007|consen 410 MEAIRELVSQGNAYIRE 426 (586)
T ss_pred HHHHHHHHhhhhHHHHH
Confidence 99999999988887643
No 59
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.97 E-value=8.9e-31 Score=269.83 Aligned_cols=92 Identities=21% Similarity=0.217 Sum_probs=86.9
Q ss_pred CCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy2890 35 NGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQ 114 (893)
Q Consensus 35 ~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~ 114 (893)
+.++|++.|.|| |.+||||+++|+++|+++||+|++|++|++++|+|+||+||+.+|+++|++|+++++++.+.++++
T Consensus 20 ~~~~y~~gpt~y--~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~~ 97 (213)
T cd00672 20 LVTMYVCGPTVY--DYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFED 97 (213)
T ss_pred CceEEEeCCccC--CCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 678888877777 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcc-cccCcccc
Q psy2890 115 LSSLGLAI-DWSREIIT 130 (893)
Q Consensus 115 l~~lgi~~-Dw~~~~~T 130 (893)
+++|||++ | .+.+|
T Consensus 98 ~~~l~i~~~d--~~~rt 112 (213)
T cd00672 98 MKALNVLPPD--VVPRV 112 (213)
T ss_pred HHHcCCCCCC--cceee
Confidence 99999999 7 77777
No 60
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.96 E-value=7.8e-28 Score=281.13 Aligned_cols=125 Identities=20% Similarity=0.236 Sum_probs=113.5
Q ss_pred CCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy2890 35 NGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQ 114 (893)
Q Consensus 35 ~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~ 114 (893)
++++.|..+.|||+|++||||+|+++++|+++|++|+.||+|.++.|+|++|.++...+.+.+..++.+++.+.+.++++
T Consensus 110 ~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~ 189 (507)
T PRK01611 110 GKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKED 189 (507)
T ss_pred CCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999888878889999999999999
Q ss_pred HHHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcce-eeceeeee
Q psy2890 115 LSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIY-KKTGIVNW 161 (893)
Q Consensus 115 l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy-~~~~~v~~ 161 (893)
|++|||.+| .+..+.+..+...+++++.+|.++|++| +.++.+++
T Consensus 190 l~~LgI~~D--~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~ 235 (507)
T PRK01611 190 LDRLGVHFD--VWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWV 235 (507)
T ss_pred HHHcCCeee--EEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEE
Confidence 999999999 5666777777889999999999999999 65554443
No 61
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.95 E-value=1.3e-26 Score=254.26 Aligned_cols=117 Identities=22% Similarity=0.361 Sum_probs=101.7
Q ss_pred CCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccc------------------cHHHHHHHHHc
Q psy2890 35 NGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAF------------------GMPAENAAILN 96 (893)
Q Consensus 35 ~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~------------------G~pie~~a~~~ 96 (893)
+++++|++|++ |||.+||||++.++.+|+++||+|++|++|.+++|+|+| |.|+...+...
T Consensus 18 ~~~~~v~tgi~-psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~ 96 (353)
T cd00674 18 KEKYVVASGIS-PSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPF 96 (353)
T ss_pred CCeEEEecCCC-CCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhc
Confidence 35688888875 999999999999999999999999999999999999999 78888888888
Q ss_pred CCCHHHHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceee
Q psy2890 97 NTSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKK 155 (893)
Q Consensus 97 g~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~ 155 (893)
|..+ +|++.+.+.+++.|++|||++| ....|.........+.++..|.+++.|..-
T Consensus 97 g~~~-~~~d~~~~~f~~~l~~lgi~~d--~~~~T~~y~~g~~~~~i~~~L~~~~~I~~i 152 (353)
T cd00674 97 GCCE-SYAEHFERPFEESLEKLGIEVE--FISQSQMYKSGLYDENILIALEKRDEIMAI 152 (353)
T ss_pred CCCH-HHHHHHHHHHHHHHHHcCCeee--eeecCCchhhchHHHHHHHHHHHCChHHHH
Confidence 8877 9999999999999999999999 334444455558889999999999888643
No 62
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.89 E-value=5.7e-23 Score=238.26 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=90.7
Q ss_pred CcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCcccccccccccc--------HHH-HHHHHHcCCC-------
Q psy2890 36 GKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFG--------MPA-ENAAILNNTS------- 99 (893)
Q Consensus 36 ~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G--------~pi-e~~a~~~g~~------- 99 (893)
+.++|.+|+ +|||.+||||++.++.+|+++|++|++|++|.+++|+|+|| +|. +..+...|.+
T Consensus 23 ~~~~~~~g~-~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p 101 (510)
T PRK00750 23 PPVVVETGI-GPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDP 101 (510)
T ss_pred CcEEEEeCC-CCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCC
Confidence 346666666 69999999999999999999999999999999999999997 554 2344444544
Q ss_pred ---HHHHHHHHHHHHHHHHHHcCCcccccCccccCCh-hhHHHHHHHHHHHHhcCccee
Q psy2890 100 ---PAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSP-KYYKWNQWIFLKMFKRGIIYK 154 (893)
Q Consensus 100 ---~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~-~~~~~v~~~f~~L~~~Gliy~ 154 (893)
+..|++.+.+.+++.|+++||++| ++.+++. ......+.+...|.+++.|..
T Consensus 102 ~G~~~~~~~~~~~~~~~~~~~~gi~~d---~~~~t~~y~~g~~~~~i~~~l~~~~~i~~ 157 (510)
T PRK00750 102 FGCHESYAEHFNAPLREFLDRFGIEYE---FISATECYKSGRYDEAILTALENRDEIME 157 (510)
T ss_pred CCCchHHHHHHHHHHHHHHHHcCCceE---EEehhhhhccCchHHHHHHHHHhHHHHHH
Confidence 799999999999999999999999 4444443 333566666677777766653
No 63
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.87 E-value=3.5e-20 Score=219.24 Aligned_cols=194 Identities=11% Similarity=0.111 Sum_probs=130.6
Q ss_pred eeecchhhHHHHHHHHHHHHHHHHHhcCccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccce
Q psy2890 540 QYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHA 619 (893)
Q Consensus 540 ~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~ 619 (893)
+||-|.|| |.-+.+.+ +.|..+|+ .+.+++.+||+.+ .+|
T Consensus 331 I~V~g~~q---~~h~~~v~-~~l~~lG~----~~~~~l~h~~~~~---------V~~----------------------- 370 (566)
T TIGR00456 331 IYVWGSDH---HLHIAQFF-AILEKLGF----YKKKELIHLNFGM---------VPL----------------------- 370 (566)
T ss_pred EEEecCcH---HHHHHHHH-HHHHHcCC----CCCCceEEEEEEE---------EEC-----------------------
Confidence 78899998 44345544 45566665 3456788887655 223
Q ss_pred eeecCCCcceeccccccccCCCCccCcc-----------------------chhhhhCchhHHHHHHhcCCCCCCcccCh
Q psy2890 620 ILKLDKKPVIIGGIEKMSKSKNNGIDPQ-----------------------TQINTYGADSTRLFIIFSAPPEKNLEWSD 676 (893)
Q Consensus 620 ~~~~~g~~~~~~~~~KMSKSkgN~i~p~-----------------------~ii~~yGaD~lRl~ll~~~~~~~d~~~~~ 676 (893)
.|||||+||+|+|+ ++++.+|+|++||++++.. ..+|++||.
T Consensus 371 --------------~kmSkr~Gn~V~~~dll~~~~~ra~~~i~~~~~~~~~~~~~~vg~dAvRy~~L~~~-~~~d~~Fd~ 435 (566)
T TIGR00456 371 --------------GSMKTRRGNVISLDNLLDEASKRAGNVITIKNDLEEEDVADAVGIGAVRYFDLSQN-RETHYVFDW 435 (566)
T ss_pred --------------CCCCccCCceeeHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceeeHHhhcC-CCCCceecH
Confidence 79999999999998 7888899999999999876 699999999
Q ss_pred hhhhHH--------HHHHHHHHHHHHhhhhccccccccccccCCccccCCChhHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q psy2890 677 IGIEGA--------YRFLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTV 748 (893)
Q Consensus 677 ~~i~~~--------~~~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~a 748 (893)
+.+... .....|+.+.++.... ...... ..+....++.++.++..+..+...+..++++++++.+
T Consensus 436 d~~~~~~~n~~~yiqYa~aR~~SIlrK~~~-----~~~~~~--~~~~~~~~~~e~~Ll~~l~~~~~~v~~a~~~~~p~~~ 508 (566)
T TIGR00456 436 DAMLSFEGNTAPYIQYAHARICSILRKADI-----DGEKLI--ADDFSLLEEKEKELLKLLLQFPDVLEEAAEELEPHVL 508 (566)
T ss_pred HHHhccCCCCchhHHHHHHHHHHHHHhccc-----cccccc--ccccCCCCHHHHHHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 875432 2223333333333211 001000 0011123566888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccCCCCCc---cc----HHHHHHHHHHHHHHhcccc
Q psy2890 749 VSGCMKIFNILERINSETKFDNNKNT---NN----DILLYEGMSIFLRVLNPIA 795 (893)
Q Consensus 749 i~~l~~fvn~l~~~~k~~~~~~~~~~---~~----~~~l~~~l~~ll~LL~P~~ 795 (893)
+..+++++..+|+|+......+.+.. .+ ......+|+..+.||.-=+
T Consensus 509 ~~~l~~La~~~N~yy~~~~Vl~~~~~~~~~~RL~L~~a~~~vl~~gL~lLGI~~ 562 (566)
T TIGR00456 509 TNYLYELASLFSSFYKACPVLDAENENLAAARLALLKATRQTLKNGLQLLGIEP 562 (566)
T ss_pred HHHHHHHHHHHHHHHhcCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999865543332211 11 2234456666666665433
No 64
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.85 E-value=1.6e-20 Score=191.06 Aligned_cols=172 Identities=17% Similarity=0.334 Sum_probs=128.4
Q ss_pred cChhhhhHHHH-HHHHHHHHHHhhhhccccccccccccCCccccCCChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy2890 674 WSDIGIEGAYR-FLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGC 752 (893)
Q Consensus 674 ~~~~~i~~~~~-~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l 752 (893)
||+++++++++ |++|+||+++++.++. +...+.+.........++..|+|+++++++++++++++|++|+|++|++.+
T Consensus 1 ~s~~~v~~~~~~f~~KlwN~~rf~l~~~-~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~e~~~f~~a~~~l 79 (183)
T cd07961 1 FSEKGVREVVRKVLLPLWNAYRFFVTYA-NLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRAL 79 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCCCccccccccCchhHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 57889999999 9999999999986411 111111100000123467899999999999999999999999999999999
Q ss_pred HHHHHHHHH-hh---cccccCCCCC---cccHHHHHHHHHHHHHHhcccccchHHHHHHHhhccC--CCCCeeeccCCCC
Q psy2890 753 MKIFNILER-IN---SETKFDNNKN---TNNDILLYEGMSIFLRVLNPIAPHITHILWKELKYSI--QQGDILNACWPKI 823 (893)
Q Consensus 753 ~~fvn~l~~-~~---k~~~~~~~~~---~~~~~~l~~~l~~ll~LL~P~~P~isEEIwq~L~~~~--~~~sI~~~~wP~~ 823 (893)
|.|++.+++ |. +.++|+..+. ..++.++..+++.+++||+|||||+|||||+.++... +++||+.++||++
T Consensus 80 ~~f~~~~~~~Y~e~~K~~~~~~~~~~~~~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~~l~~~~~~~~~si~~~~wP~~ 159 (183)
T cd07961 80 LEFIDELTNWYIRRNRKRFWGEEGDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRRELGDAPESVHLLDWPEV 159 (183)
T ss_pred HHHHHHhhhhHhhhchHHhcCCCCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcCCCCCceeeecCCCC
Confidence 999997755 33 3445543211 2467799999999999999999999999999998510 1368999999998
Q ss_pred Chhhhh-hHHHHHHHHHHhhhhcc
Q psy2890 824 DSLALE-EEKEEVKLIIQINGKFR 846 (893)
Q Consensus 824 d~~~~~-~~~~~~~~vv~i~gk~R 846 (893)
++...+ ..+..++.+.++...+|
T Consensus 160 ~~~~~~~~~~~~~~~l~~~i~~~r 183 (183)
T cd07961 160 DESLIDEELEEAMELVREIVELGR 183 (183)
T ss_pred cccccCHHHHHHHHHHHHHHHhhC
Confidence 765444 23466778888877665
No 65
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.78 E-value=1.1e-18 Score=200.88 Aligned_cols=86 Identities=21% Similarity=0.334 Sum_probs=79.8
Q ss_pred CcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccc------------------cHHHHHHHHHcC
Q psy2890 36 GKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAF------------------GMPAENAAILNN 97 (893)
Q Consensus 36 ~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~------------------G~pie~~a~~~g 97 (893)
++++|.++.+ |||.+||||++..+.+|+++|++|++|++|.+++|+|+| |.|+...+...|
T Consensus 18 ~~~~~~tg~~-psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g 96 (515)
T TIGR00467 18 NLYTVASGIT-PSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEG 96 (515)
T ss_pred CeEEEecCCC-CCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCC
Confidence 4688888888 999999999999999999999999999999999999999 888877777778
Q ss_pred CCHHHHHHHHHHHHHHHHHHcCCccc
Q psy2890 98 TSPAKWTYDNVSYMKKQLSSLGLAID 123 (893)
Q Consensus 98 ~~~~~~~~~~~~~~~~~l~~lgi~~D 123 (893)
.+ ..|++.+...+.+.|..||+.++
T Consensus 97 ~~-~s~~~h~~~~~~~~l~~~gi~~e 121 (515)
T TIGR00467 97 CK-TSYAEHFLIPFLESLPVLGINPE 121 (515)
T ss_pred Cc-HHHHHHHHHHHHHHHHHcCCeEE
Confidence 75 89999999999999999999988
No 66
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=4.2e-16 Score=181.36 Aligned_cols=143 Identities=20% Similarity=0.244 Sum_probs=105.5
Q ss_pred chHHHHHHHHHHHhC-CCcccCCCCCCCCCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccc
Q psy2890 7 FVEIEKITQCYWNKI-NAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAF 85 (893)
Q Consensus 7 ~~~iE~~~~~~W~~~-~~f~~~~~~~~~~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~ 85 (893)
...+.+...+...+. +.|....... .++..|=-.-|||+|+|||||+||.+++|+++|.++..||+|....-.+++
T Consensus 90 ~~~~~~~~~~~l~~~~~~~G~~~~~~---~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~ 166 (577)
T COG0018 90 PEFLAELLLEILEKGDDRYGRSKLGK---GKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDW 166 (577)
T ss_pred HHHHHHHHHHHHHhcccccCccccCC---CCEEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcH
Confidence 344666667777763 3342332212 356777678899999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHH---c------------------------------CC--C-------------H-----HHHHHHHHHHHH
Q psy2890 86 GMPAENAAIL---N------------------------------NT--S-------------P-----AKWTYDNVSYMK 112 (893)
Q Consensus 86 G~pie~~a~~---~------------------------------g~--~-------------~-----~~~~~~~~~~~~ 112 (893)
|..+...+.. . +. . . +..++.....++
T Consensus 167 G~Q~~~l~~~~~~~~~e~~~~~~~~~~~lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k 246 (577)
T COG0018 167 GTQIGMLALSYEKRGREALGLTPEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIK 246 (577)
T ss_pred HHHHHHHHHHHHHhccccccCCCCcchHHHHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 9877654311 0 10 0 0 014555678889
Q ss_pred HHHHHcCCcccccCccccCChhhHHHHHHHHHHHHhcCccee
Q psy2890 113 KQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYK 154 (893)
Q Consensus 113 ~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~ 154 (893)
+++.+|||.+| .++...+..+...+..+...|.++|++|+
T Consensus 247 ~~l~~l~V~fD--~~~~E~e~~~~~~~~~vv~~L~~~~~~~e 286 (577)
T COG0018 247 ETLDRLGVKFD--VYDSEGESFYNGKVEKVVEDLEEKGLLYE 286 (577)
T ss_pred HHHHHhCcccc--eeeccchhhhcccHHHHHHHHHhcCCEee
Confidence 99999999999 55555666666678999999999999998
No 67
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.76 E-value=2e-17 Score=167.96 Aligned_cols=166 Identities=11% Similarity=0.241 Sum_probs=123.2
Q ss_pred cChhhhhHHHHHHHHHHHHHHhhhhccccccccccccCCccccCCChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy2890 674 WSDIGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCM 753 (893)
Q Consensus 674 ~~~~~i~~~~~~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~ 753 (893)
++.+.++++.++++|+||+++++.+... .+++..........+..|+|++++++.++++++++|++|+|+.|++.+|
T Consensus 1 i~~~~~~~~~~~~~Kl~N~~rf~~~~~~---~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~e~~~f~~a~~~i~ 77 (180)
T cd07960 1 ISDEILKQVAEAYRKIRNTFRFLLGNLN---DFDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVYQALN 77 (180)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHccc---CCCcccccCChhhccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3677899999999999999999875322 2211000001134577899999999999999999999999999999999
Q ss_pred HHHH-HHHH-hhc---ccccCCC--C--CcccHHHHHHHHHHHHHHhcccccchHHHHHHHhhccCCCCCeeeccCCCCC
Q psy2890 754 KIFN-ILER-INS---ETKFDNN--K--NTNNDILLYEGMSIFLRVLNPIAPHITHILWKELKYSIQQGDILNACWPKID 824 (893)
Q Consensus 754 ~fvn-~l~~-~~k---~~~~~~~--~--~~~~~~~l~~~l~~ll~LL~P~~P~isEEIwq~L~~~~~~~sI~~~~wP~~d 824 (893)
+|++ ++++ |+. .+.+++. + ...+..+++.+++.+++||+|||||+|||||+.|+...+.++|+.++||+++
T Consensus 78 ~f~~~~l~n~Yi~~~k~~~~~~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~aeel~~~l~~~~~~~~v~~~~wP~~~ 157 (180)
T cd07960 78 NFCTVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGEKKEESVFLEDWPELP 157 (180)
T ss_pred HHHHHHHHHHHHHhcccceecCCCCCHHHHHHHHHHHHHHHHHHHHHcchhhhhHHHHHHhccccCCCCCeeccCCCCCc
Confidence 9996 5754 443 2233221 1 1236779999999999999999999999999999852113689999999988
Q ss_pred hhhhh-hHHHHHHHHHHhh
Q psy2890 825 SLALE-EEKEEVKLIIQIN 842 (893)
Q Consensus 825 ~~~~~-~~~~~~~~vv~i~ 842 (893)
+...+ +.+..++.+.+|.
T Consensus 158 ~~~~~~~~~~~~~~~~~i~ 176 (180)
T cd07960 158 EEWKDEELEEKWEKLLALR 176 (180)
T ss_pred ccccCHHHHHHHHHHHHHH
Confidence 75544 2345666666665
No 68
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.75 E-value=5.1e-18 Score=176.42 Aligned_cols=124 Identities=19% Similarity=0.213 Sum_probs=111.2
Q ss_pred EEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q psy2890 38 FYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSS 117 (893)
Q Consensus 38 ~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 117 (893)
..|=-..|||||+|||||+|+++++|+++|++|+.|++|.+..|+|++|.+|+..|.+.+. +.++++.+++.+++.+++
T Consensus 2 v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~-~~~~~~~~~~~~~~~~~~ 80 (212)
T cd00671 2 ILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEK-WRKLVEESIKADLETYGR 80 (212)
T ss_pred eEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3455578999999999999999999999999999999999999999999999999976644 899999999999999999
Q ss_pred cCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeeeecCCCC
Q psy2890 118 LGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEK 166 (893)
Q Consensus 118 lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~ 166 (893)
|||++| .+.++++. ...++.+++.|.++|++|+....+++|+.+.
T Consensus 81 L~i~~d--~~~~es~~--~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~~ 125 (212)
T cd00671 81 LDVRFD--VWFGESSY--LGLMGKVVELLEELGLLYEEDGALWLDLTEF 125 (212)
T ss_pred hCCcCc--eecchhhh--hhHHHHHHHHHHHCCCEEEeCCcEEEechhh
Confidence 999999 55556553 8899999999999999999999998887554
No 69
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.73 E-value=2e-15 Score=178.26 Aligned_cols=149 Identities=10% Similarity=0.067 Sum_probs=100.6
Q ss_pred cccccCCCCccCccchhhh-------------------------hCchhHHHHHHhcCCCCCCcccChhhhhHH----HH
Q psy2890 634 EKMSKSKNNGIDPQTQINT-------------------------YGADSTRLFIIFSAPPEKNLEWSDIGIEGA----YR 684 (893)
Q Consensus 634 ~KMSKSkgN~i~p~~ii~~-------------------------yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~----~~ 684 (893)
.||||.+||+|+.+|++++ -|.||+||++++. ...+++.||.+.+-.. .-
T Consensus 370 ~kmStR~G~~v~l~dLldea~~~a~~~~~~~~~~l~~~~~~a~~vg~~Airy~~l~~-~~~~~~~Fd~d~~l~~~g~t~p 448 (562)
T PRK12451 370 KKMSTRKGRVVLLEEVLEEAIELAKQNIEEKNPNLKQKEEVAKQVGVGAVIFHDLKN-ERMHNIEFSLENMLKFEGETGP 448 (562)
T ss_pred CCCcCCCCCeeEHHHHHHHHHHHHHHHHHhhccccccHHHHHHHhccceeeeHHhhc-CCCCCceECHHHHhCcCCCccH
Confidence 6999999999999999996 7799999999976 5689999999984221 01
Q ss_pred HHH----HHHHHHHhhhhccccccccccccCCccccCCChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy2890 685 FLN----RVWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIFNILE 760 (893)
Q Consensus 685 ~l~----rl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fvn~l~ 760 (893)
+++ |+...++.... ..... ...-.++.+..++..+..+...+.+++++++++.++..+++++..+|
T Consensus 449 YiQYa~AR~~SIlrka~~---~~~~~-------~~~l~~~~E~~Ll~~L~~~~~~v~~a~e~~ep~~~~~yl~~LA~~fN 518 (562)
T PRK12451 449 YVQYTHARACSILRKESV---EFETC-------TFALKDDYSWSVVKLLNKFPQVIEAAFNKNEPSVISKYVLDVAQSFN 518 (562)
T ss_pred HHHHHHHHHHHHHHhcCC---Ccccc-------ccCCCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 222 22222222110 00001 11112566788999999999999999999999999999999999999
Q ss_pred HhhcccccCCCCC-ccc----HHHHHHHHHHHHHHhcc
Q psy2890 761 RINSETKFDNNKN-TNN----DILLYEGMSIFLRVLNP 793 (893)
Q Consensus 761 ~~~k~~~~~~~~~-~~~----~~~l~~~l~~ll~LL~P 793 (893)
+|+.....-+.+. ..+ ......+|...+.||.-
T Consensus 519 ~fy~~~~Vl~~~~~~~~RL~L~~a~~~vL~~gL~LLGI 556 (562)
T PRK12451 519 KYYGNVRILEESAEKDSRLALVYAVTVVLKEGLRLLGV 556 (562)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9986533322221 111 22334455556666643
No 70
>PLN02286 arginine-tRNA ligase
Probab=99.65 E-value=1.6e-13 Score=162.20 Aligned_cols=152 Identities=8% Similarity=0.046 Sum_probs=102.4
Q ss_pred cccccCCCCccCccchhh-----------------------------hhCchhHHHHHHhcCCCCCCcccChhhhhH---
Q psy2890 634 EKMSKSKNNGIDPQTQIN-----------------------------TYGADSTRLFIIFSAPPEKNLEWSDIGIEG--- 681 (893)
Q Consensus 634 ~KMSKSkgN~i~p~~ii~-----------------------------~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~--- 681 (893)
.||||.+||+|+.+|+++ ..|.||+||++++. ...++++|+.+.+..
T Consensus 377 ~kmStR~G~~v~L~dlldea~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~Airy~~L~~-~~~~~~~Fd~d~~l~~~g 455 (576)
T PLN02286 377 KRFRTRSGEVVRLVDLLDEAKSRSKAALIERGKDSEWTPEELEQAAEAVGYGAVKYADLKN-NRLTNYTFSFDQMLDLKG 455 (576)
T ss_pred CcccCCCCCeeEHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHhhhhhhhhhhhhc-CCCCCCccCHHHHHhhcC
Confidence 699999999999999999 35799999999976 568999999998432
Q ss_pred --------HHHHHHHHHHHHHhhhhccccccccccccCCccccCCChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy2890 682 --------AYRFLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCM 753 (893)
Q Consensus 682 --------~~~~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~ 753 (893)
++..+..+.+-+ .. ....+. ......-.++.++.++..|..+...+..+.++++.+..+..++
T Consensus 456 ~t~pYlQYahAR~~SIlrKa---~~---~~~~~~---~~~~~~l~~~~E~~L~~~l~~fp~vv~~a~~~~~P~~l~~Yl~ 526 (576)
T PLN02286 456 NTAVYLLYAHARICSIIRKS---GK---DIDELK---KTGKIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLY 526 (576)
T ss_pred CChHHHHHHHHHHHHHHHhc---cC---cccccc---ccccccCCCHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 222233332221 11 000010 0001111256778999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccCCCCCccc----HHHHHHHHHHHHHHhcccc
Q psy2890 754 KIFNILERINSETKFDNNKNTNN----DILLYEGMSIFLRVLNPIA 795 (893)
Q Consensus 754 ~fvn~l~~~~k~~~~~~~~~~~~----~~~l~~~l~~ll~LL~P~~ 795 (893)
++...+++|+..++.-+.+...+ ......+|...+.||.-=+
T Consensus 527 ~LA~~F~~fY~~~~Vl~~~~~~aRL~L~~a~~~vL~~gL~LLGI~~ 572 (576)
T PLN02286 527 NLSEKFTKFYSNCKVNGSEEETSRLLLCEATAIVMRKCFHLLGITP 572 (576)
T ss_pred HHHHHHHHHHhcCccCCCCchhHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999985543332221122 2234456666666665433
No 71
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=99.63 E-value=1.5e-15 Score=149.90 Aligned_cols=133 Identities=21% Similarity=0.411 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHHH-Hhh---cccccCCCCC--cccHHHHHHHHHHHHHHhccc
Q psy2890 722 QKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIF-NILE-RIN---SETKFDNNKN--TNNDILLYEGMSIFLRVLNPI 794 (893)
Q Consensus 722 D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fv-n~l~-~~~---k~~~~~~~~~--~~~~~~l~~~l~~ll~LL~P~ 794 (893)
|+|++++++.++++++++|++|+|++|++.++.|+ ++++ .|. +...+++.+. ..++.++..+++.+++||+||
T Consensus 1 D~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~~~~~~~l~~~l~~~~~ll~P~ 80 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAYENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDDESREAQYTLYEILKILLILLSPF 80 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchhHHHHHHHHHHHHHHHhhccCCC
Confidence 89999999999999999999999999999999984 7884 454 2233333221 126689999999999999999
Q ss_pred ccchHHHHHHHhhcc--CCCCCeeeccCCCCChhhhh-hH-HHHHHH---HHHhhhhcceEEEecCCC
Q psy2890 795 APHITHILWKELKYS--IQQGDILNACWPKIDSLALE-EE-KEEVKL---IIQINGKFRGHIFVKKKC 855 (893)
Q Consensus 795 ~P~isEEIwq~L~~~--~~~~sI~~~~wP~~d~~~~~-~~-~~~~~~---vv~i~gk~R~~~~v~~~~ 855 (893)
|||+|||+|++|... ..++||+.++||. +....+ .. ++.++. ++++++++|+..+++++.
T Consensus 81 ~P~~aEeiw~~l~~~~~~~~~si~~~~~p~-~~~~~~~~~~~~~~~~~~~v~~~i~~~r~~~~i~~~~ 147 (153)
T PF08264_consen 81 MPFIAEEIWQRLKSEKLGEKSSIFLEKWPE-DPEFIDEELEEEAFEILKEVVQVIRKIRKEKNIKPKE 147 (153)
T ss_dssp SHHHHHHHHHHCTTHHTTSSSSGGGS------GGGGHHHH-HHHHHHHHHHHHHHHHHHHCCEESTTC
T ss_pred CcHHHHHHHHHhhhccCCCCCeeeeCCCCC-ChhhhcHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Confidence 999999999766311 1267999999998 554332 11 234444 888999999999998764
No 72
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.62 E-value=3.8e-15 Score=139.94 Aligned_cols=116 Identities=16% Similarity=0.311 Sum_probs=96.1
Q ss_pred cChhhhhHHHHHHHHHHHHHHhhhhccccccccccccCCccccCCChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH-
Q psy2890 674 WSDIGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGC- 752 (893)
Q Consensus 674 ~~~~~i~~~~~~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l- 752 (893)
|+++.++++.+|++|+|+++..... + .. +...++..|+|++++++.++++++++|++|+|++|++.+
T Consensus 1 w~~~~~~~~~~~l~R~~~~~~~~~~--~---~~-------~~~~~~~~d~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~ 68 (117)
T cd07959 1 FREEEANSAILRLERFYELAEELIE--T---EG-------ELEELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGL 68 (117)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHh--c---cC-------CccccchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 7899999999999999999987433 1 11 112356789999999999999999999999999999996
Q ss_pred HHHHHHHHHhhcccccCCCCCcccHHHHHHHHHHHHHHhcccccchHHHHHHHh
Q psy2890 753 MKIFNILERINSETKFDNNKNTNNDILLYEGMSIFLRVLNPIAPHITHILWKEL 806 (893)
Q Consensus 753 ~~fvn~l~~~~k~~~~~~~~~~~~~~~l~~~l~~ll~LL~P~~P~isEEIwq~L 806 (893)
|+|.+.++.|......+ ..+.++.++++.+++||+||+||+|||+|+.|
T Consensus 69 ~~~~~~~~~Y~~~~~~~-----~~~~~~~~~l~~~~~lL~P~~P~~aeeiw~~~ 117 (117)
T cd07959 69 YELQNDLDWYRERGGAG-----MNKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred HHHHHHHHHHHHHhCcc-----chHHHHHHHHHHHHHHHcCcchHhHHHHHhhC
Confidence 99998888776421111 35679999999999999999999999999975
No 73
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.62 E-value=4.7e-15 Score=139.18 Aligned_cols=117 Identities=37% Similarity=0.723 Sum_probs=97.8
Q ss_pred cChhhhhHHHHHHHHHHHHHHhhhhccccccccccccCCccccCCChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy2890 674 WSDIGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCM 753 (893)
Q Consensus 674 ~~~~~i~~~~~~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~ 753 (893)
|++++++++++|++|+|+++..... +..+.. ........|+|++++++++++++.++|++|+|++|++.++
T Consensus 1 w~~~~~~~~~n~l~R~~~~~~~~~~--~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~ 71 (117)
T cd07958 1 WSDSGVEGAYRFLNRVWRLVTELAE--ALAAPA-------AAAELSEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALM 71 (117)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHh--hccccc-------cccccchhhHHHHHHHHHHHHHHHHHHhCCcchHHHHHHH
Confidence 8899999999999999999887543 111100 0123456799999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccCCCCCcccHHHHHHHHHHHHHHhcccccchHHHHHHHh
Q psy2890 754 KIFNILERINSETKFDNNKNTNNDILLYEGMSIFLRVLNPIAPHITHILWKEL 806 (893)
Q Consensus 754 ~fvn~l~~~~k~~~~~~~~~~~~~~~l~~~l~~ll~LL~P~~P~isEEIwq~L 806 (893)
+|++.+++|.... .....++.++++.++++|+|||||+|||+|+.|
T Consensus 72 ~~~~~~n~~~~~~-------~p~~~~~~~~l~~~~~lL~P~~P~~aeei~~~l 117 (117)
T cd07958 72 ELVNALYKYKKKD-------AQHAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred HHHHHHHHhhccc-------cchHHHHHHHHHHHHHHHcccchHHHHHHHhhC
Confidence 9999999987431 126789999999999999999999999999875
No 74
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=99.49 E-value=1.8e-13 Score=132.12 Aligned_cols=128 Identities=16% Similarity=0.311 Sum_probs=99.1
Q ss_pred cChhhhhHHHHHHHHHHHHHHhhhhccccccccccccCCccccCCChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy2890 674 WSDIGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCM 753 (893)
Q Consensus 674 ~~~~~i~~~~~~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~ 753 (893)
||++++.++++|++|+||+++++.. .....+.. .+ +.......|++++++++.+++++.++|++|+|++|++.+|
T Consensus 1 ~~~~~~~~~~~~l~k~~~~~~~~~~-~~~~~~~~-~~---~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~ 75 (135)
T cd07962 1 FDEKRVEGGRNFCNKLWNAARFVLM-NLEDDDEP-EE---DPESLSLADRWILSRLNKTVEEVTEALENYRFSEAATALY 75 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH-cccccCcc-cc---ccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 6889999999999999999998643 11100000 00 1123456789999999999999999999999999999999
Q ss_pred HHHH--HHHHhhcccccCCC--C---CcccHHHHHHHHHHHHHHhcccccchHHHHHHHh
Q psy2890 754 KIFN--ILERINSETKFDNN--K---NTNNDILLYEGMSIFLRVLNPIAPHITHILWKEL 806 (893)
Q Consensus 754 ~fvn--~l~~~~k~~~~~~~--~---~~~~~~~l~~~l~~ll~LL~P~~P~isEEIwq~L 806 (893)
++++ ..|.|+....+|.. + ......++.++++.++++|+|||||+||++|+.|
T Consensus 76 ~~~~~~~~N~Yi~~~~pW~~~~~~~~~~~~~~~~~~~l~~l~~lL~P~~P~~ae~l~~~L 135 (135)
T cd07962 76 EFFWNDFCDWYLELVKPRLYGEDEEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HHHHHHHhHHHHHHhhHHHcCCChHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHhcC
Confidence 9997 57777765544421 1 1235668899999999999999999999999875
No 75
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=99.43 E-value=2.1e-12 Score=144.44 Aligned_cols=120 Identities=21% Similarity=0.282 Sum_probs=83.5
Q ss_pred CCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHH-------c---CCC-----
Q psy2890 35 NGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAIL-------N---NTS----- 99 (893)
Q Consensus 35 ~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~-------~---g~~----- 99 (893)
.++..|=-.-|||+|+||+||+|+.+++|+++|.++..||+|....-..+.|..+...+.. . ...
T Consensus 19 ~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~l~ 98 (354)
T PF00750_consen 19 GKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGDEELLEEDPIKHLE 98 (354)
T ss_dssp SEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTSHSSCHHHHH
T ss_pred CCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhhhhhcccccccchh
Confidence 4667777788999999999999999999999999999999999999999999877654311 0 000
Q ss_pred ----------------------------------------HH-HHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHH
Q psy2890 100 ----------------------------------------PA-KWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKW 138 (893)
Q Consensus 100 ----------------------------------------~~-~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~ 138 (893)
.. .|.....+.++++++++|+.+| .++...+..+...
T Consensus 99 ~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~fD--v~~~E~Es~~~~~ 176 (354)
T PF00750_consen 99 DLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIRFD--VWFDESESFYSGK 176 (354)
T ss_dssp HHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT---S--EEEEHCHHHHTTH
T ss_pred hhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhC--cCcccchhhhhhH
Confidence 01 1222255677788888888888 3343445556677
Q ss_pred HHHHHHHHHhcCcceeec
Q psy2890 139 NQWIFLKMFKRGIIYKKT 156 (893)
Q Consensus 139 v~~~f~~L~~~Gliy~~~ 156 (893)
+..++.+|.++|++|+.+
T Consensus 177 v~~vl~~L~e~g~~~~~d 194 (354)
T PF00750_consen 177 VDEVLERLKEKGLLYESD 194 (354)
T ss_dssp HHHHHHHHHCTTTEEEET
T ss_pred HHHHHHHHHhCCcEEecC
Confidence 788888888888888643
No 76
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.40 E-value=6.8e-13 Score=129.41 Aligned_cols=77 Identities=22% Similarity=0.225 Sum_probs=74.5
Q ss_pred EEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy2890 40 TCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLS 116 (893)
Q Consensus 40 i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~ 116 (893)
|+.+.|||||.+||||+++++++|+++|++|++|++|.++.|+|++|.++...|.+.+..++++++.+++.++++++
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 77 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGENAKAFVERWIERIKEDVE 77 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999998
No 77
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.37 E-value=4.6e-12 Score=120.98 Aligned_cols=120 Identities=12% Similarity=0.155 Sum_probs=92.3
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhccccccccccccCCccccCCChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy2890 676 DIGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKI 755 (893)
Q Consensus 676 ~~~i~~~~~~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~f 755 (893)
.+.+....++++|+++++..... + .+ +.....+..|+|+++++++++++++++|++|+|++|++.+++|
T Consensus 3 ~~l~~~~gnll~r~~~~~~~~~~--~---~~------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 71 (129)
T cd07957 3 SELANNLGNLVNRTLNMASKYFG--G---VV------PEFGGLTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMEL 71 (129)
T ss_pred HHHHhhHhhHHHHHHHHHHHHcC--C---cC------CCCCCCCcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34556678899999998876543 1 11 0112245679999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccCC---C-CCc---ccHHHHHHHHHHHHHHhcccccchHHHHHHHh
Q psy2890 756 FNILERINSETKFDN---N-KNT---NNDILLYEGMSIFLRVLNPIAPHITHILWKEL 806 (893)
Q Consensus 756 vn~l~~~~k~~~~~~---~-~~~---~~~~~l~~~l~~ll~LL~P~~P~isEEIwq~L 806 (893)
++..++|.....+|. . +.. ....++.++++.++++|+|||||+|||+|+.|
T Consensus 72 ~~~~n~y~~~~kpw~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~l 129 (129)
T cd07957 72 ARAANKYIDETAPWKLAKEEDPERLATVLYVLLELLRILAILLSPFMPETAEKILDQL 129 (129)
T ss_pred HHHHHhhhccCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHhC
Confidence 998888876544431 1 111 23457788889999999999999999999975
No 78
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=98.97 E-value=2.1e-09 Score=117.40 Aligned_cols=85 Identities=19% Similarity=0.246 Sum_probs=58.8
Q ss_pred cEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccH--------HHHHHHHHc--CCC-------
Q psy2890 37 KFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGM--------PAENAAILN--NTS------- 99 (893)
Q Consensus 37 ~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~--------pie~~a~~~--g~~------- 99 (893)
..+++..--.|+|.+|||+++..+.+|+++|-+|.+|.+|.+++.||+++- |-. +.++ |.+
T Consensus 23 ~~~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~--~~~~ylg~Plt~VPdP 100 (360)
T PF01921_consen 23 EPYVFASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNP--ELEKYLGKPLTRVPDP 100 (360)
T ss_dssp SEEEEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC---CCCCTTSBTTTSB-T
T ss_pred ccEEEecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChH--HHHHhcCCccccCCCC
Confidence 345666667899999999999999999999999999999999999999962 211 1111 211
Q ss_pred ---HHHHHHHHHHHHHHHHHHcCCccc
Q psy2890 100 ---PAKWTYDNVSYMKKQLSSLGLAID 123 (893)
Q Consensus 100 ---~~~~~~~~~~~~~~~l~~lgi~~D 123 (893)
...|++.+...+.+.|..+|+.+.
T Consensus 101 ~G~~~SyaeH~~~~~~~~L~~~gie~e 127 (360)
T PF01921_consen 101 FGCHESYAEHFNAPFEEFLDEFGIEYE 127 (360)
T ss_dssp TSSSSCHHHHHHHHHHHHHHTTT---E
T ss_pred CCCCccHHHHHHHHHHHHHHHcCCceE
Confidence 256899999999999999999887
No 79
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=98.92 E-value=7.1e-09 Score=96.71 Aligned_cols=114 Identities=13% Similarity=0.206 Sum_probs=85.0
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhccccccccccccCCccccCCChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy2890 676 DIGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKI 755 (893)
Q Consensus 676 ~~~i~~~~~~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~f 755 (893)
++.+.++.+|++++||.+.++..... ...+ ..........|+|++++++.++++++++|++|+|++|++.+|+|
T Consensus 1 ~~~v~~~~~~~n~~~r~~~~~~~~~~---~~~~---~~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i~~~ 74 (117)
T cd07375 1 EERLKQARAFLNRLYRLLSFFRKALG---GTQP---KWDNELLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKF 74 (117)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcC---CCCC---CcChhhcCHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 46788999999999999988654111 1100 00001235679999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccCC---CCCcccHHHHHHHHHHHHHHhcccc
Q psy2890 756 FNILERINSETKFDN---NKNTNNDILLYEGMSIFLRVLNPIA 795 (893)
Q Consensus 756 vn~l~~~~k~~~~~~---~~~~~~~~~l~~~l~~ll~LL~P~~ 795 (893)
++.++.|.....+|. ........++..+++.++++|+|||
T Consensus 75 ~~~~n~y~~~~~pw~~~~~~~~~~~~~~~~~l~~l~~lL~P~~ 117 (117)
T cd07375 75 TNELNWYLDELKPALQTEELREAVLAVLRAALVVLTKLLAPFT 117 (117)
T ss_pred HHhccHHHHHhhHHHcCchhHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999888865322221 1112345689999999999999996
No 80
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=1.4e-07 Score=105.85 Aligned_cols=87 Identities=18% Similarity=0.275 Sum_probs=70.2
Q ss_pred cEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCcccccccccccc--------HHHHHHHHH-cCCC--------
Q psy2890 37 KFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFG--------MPAENAAIL-NNTS-------- 99 (893)
Q Consensus 37 ~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G--------~pie~~a~~-~g~~-------- 99 (893)
..+++..--.|+|.+|||+++..+.+|+++|-+|-+|+.|.+++=+|++. +|-....++ .|..
T Consensus 19 ~~~~v~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP~ 98 (521)
T COG1384 19 DEYVVATGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDPF 98 (521)
T ss_pred CcEEEecCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCCc
Confidence 34666677789999999999999999999999999999999999999996 232122222 2322
Q ss_pred --HHHHHHHHHHHHHHHHHHcCCccc
Q psy2890 100 --PAKWTYDNVSYMKKQLSSLGLAID 123 (893)
Q Consensus 100 --~~~~~~~~~~~~~~~l~~lgi~~D 123 (893)
+..|++.+...+.+.|..+|+.+.
T Consensus 99 G~~~Sya~hf~~~f~~~l~~~Gi~~E 124 (521)
T COG1384 99 GCCDSYAEHFLRPFEEFLDEFGIEVE 124 (521)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceE
Confidence 467899999999999999999887
No 81
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.46 E-value=2.6e-07 Score=96.43 Aligned_cols=95 Identities=19% Similarity=0.286 Sum_probs=73.5
Q ss_pred EEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Q psy2890 40 TCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLG 119 (893)
Q Consensus 40 i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 119 (893)
++=-+|.|||.||+||+++.++.++++| ++++.++.-+|+...+.. + ......+.|.++|+.||
T Consensus 3 ~~RfaPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~~r~--------~---~~~~~~~~i~~dL~wLG 66 (240)
T cd09287 3 VMRFAPNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDTDPRTK--------R---PDPEAYDMIPEDLEWLG 66 (240)
T ss_pred eEeCCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCCCcc--------c---chHHHHHHHHHHHHHcC
Confidence 3445799999999999999999999999 567777788887765442 1 22333456999999999
Q ss_pred CcccccCccccCChhhHHHHHHHHHHHHhcCccee
Q psy2890 120 LAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYK 154 (893)
Q Consensus 120 i~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~ 154 (893)
+ +|+.. ....++.+..+++..+|.++|++|.
T Consensus 67 l--~~d~~--~~qS~r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 67 V--KWDEV--VIASDRIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred C--CCCCc--cchhccHHHHHHHHHHHHHcCCccc
Confidence 9 55554 3455677777888999999999996
No 82
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.14 E-value=4.9e-06 Score=97.11 Aligned_cols=96 Identities=20% Similarity=0.282 Sum_probs=73.0
Q ss_pred EEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q psy2890 38 FYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSS 117 (893)
Q Consensus 38 ~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 117 (893)
-+++==+|.|||.||||||++.++.+.+|| +|...++.-+|+....+ .....++.+.|.++|+.
T Consensus 101 ~V~tRFaPsPtG~LHIGharaalln~~~Ar-----~~~G~~iLRidDTDpk~-----------~R~~~e~~~~I~edL~w 164 (567)
T PRK04156 101 KVVMRFAPNPSGPLHLGHARAAILNDEYAK-----MYGGKFILRFEDTDPRT-----------KRPDPEAYDMILEDLKW 164 (567)
T ss_pred eEEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeEccCCCCc-----------ccchHHHHHHHHHHHHH
Confidence 466778899999999999999999999999 34455555666554322 11233455889999999
Q ss_pred cCCcccccCccccCChhhHHHHHHHHHHHHhcCcce
Q psy2890 118 LGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIY 153 (893)
Q Consensus 118 lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy 153 (893)
||+ +|+.. +..+.|.....+...+|.++|++|
T Consensus 165 LGl--~wD~~--~~qSdr~~~y~~~a~~Li~~G~AY 196 (567)
T PRK04156 165 LGV--KWDEV--VIQSDRLEIYYEYARKLIEMGGAY 196 (567)
T ss_pred cCC--CCCCc--cCcccCHHHHHHHHHHHHHcCCCc
Confidence 999 45454 445567788888999999999998
No 83
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=98.06 E-value=1.1e-05 Score=94.14 Aligned_cols=95 Identities=20% Similarity=0.272 Sum_probs=73.9
Q ss_pred cEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy2890 37 KFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLS 116 (893)
Q Consensus 37 ~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~ 116 (893)
.-+++==||.|||.||||||++.++.+.+|| ...| .++.-+|+..- ..-..++.+.|.++|+
T Consensus 92 ~~vvtRFaPsPtG~LHiGharaalln~~~Ar--~~~G---~~iLRidDTDp-------------~R~~~e~~~~I~edL~ 153 (560)
T TIGR00463 92 GEVVMRFAPNPSGPLHIGHARAAILNQYFAK--KYKG---KLIIRFDDTDP-------------RRVKPEAYDMILEDLD 153 (560)
T ss_pred CeeEEEeCCCCCCCccHHHHHHHHHHHHHHH--hcCC---EEEEEeCcCCc-------------ccccHHHHHHHHHHHH
Confidence 4478888999999999999999999999997 3344 44555555543 1223346788999999
Q ss_pred HcCCcccccCccccCChhhHHHHHHHHHHHHhcCcce
Q psy2890 117 SLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIY 153 (893)
Q Consensus 117 ~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy 153 (893)
.||+..| .. +..++|.....++..+|.++|++|
T Consensus 154 wLGi~~d--~~--~~qSd~~~~y~~~a~~Li~~G~AY 186 (560)
T TIGR00463 154 WLGVKGD--EV--VYQSDRIEEYYDYCRKLIEMGKAY 186 (560)
T ss_pred HcCCCCC--cc--ccccccHHHHHHHHHHHHHcCCce
Confidence 9999855 54 456677888899999999999999
No 84
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=98.01 E-value=9.3e-06 Score=86.91 Aligned_cols=90 Identities=20% Similarity=0.248 Sum_probs=69.2
Q ss_pred cCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcc
Q psy2890 43 MLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGLAI 122 (893)
Q Consensus 43 ~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~ 122 (893)
-.|.|||.||+||+++.++...+|| +..|.-++.+=-+|. .....++.+.|.++|+.||+..
T Consensus 5 FAPSPtG~lHiG~~rtAL~n~l~Ar--~~gG~~iLRiEDtD~----------------~R~~~~~~~~I~~dL~wLGl~w 66 (272)
T TIGR03838 5 FAPSPSGPLHFGSLVAALGSYLDAR--AHGGRWLVRIEDLDP----------------PREVPGAADDILRTLEAYGLHW 66 (272)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCC----------------CCCChHHHHHHHHHHHHcCCCC
Confidence 4699999999999999999999999 667877776655553 1123355688999999999966
Q ss_pred cccCccccCChhhHHHHHHHHHHHHhcCcce
Q psy2890 123 DWSREIITCSPKYYKWNQWIFLKMFKRGIIY 153 (893)
Q Consensus 123 Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy 153 (893)
| .. -...+++.+.-.+...+|.++|++|
T Consensus 67 D--e~-~~~QS~r~~~Y~~~~~~L~~~G~aY 94 (272)
T TIGR03838 67 D--GE-VVYQSQRHALYQAALDRLLAAGLAY 94 (272)
T ss_pred C--CC-eeeeeCCHHHHHHHHHHHHHcCCEE
Confidence 6 43 1234456677788889999999988
No 85
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=97.92 E-value=2.1e-05 Score=89.64 Aligned_cols=92 Identities=22% Similarity=0.291 Sum_probs=69.3
Q ss_pred EEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Q psy2890 40 TCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLG 119 (893)
Q Consensus 40 i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 119 (893)
.+=-.|.|||.|||||+|+.++.-.+|| ...|.-++.+=-+| . ..-..++.+.|+++|++||
T Consensus 4 r~RFAPSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLRIEDTD---~-------------~Rs~~~~~~~I~e~L~wLG 65 (445)
T PRK12558 4 ITRFAPSPTGYLHVGNARTALLNWLYAR--KHGGKFILRIDDTD---L-------------ERSKQEYADAIAEDLKWLG 65 (445)
T ss_pred eEEeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeccCC---c-------------ccchHHHHHHHHHHHHHcC
Confidence 3445799999999999999998888877 45666666554444 1 2233567789999999999
Q ss_pred CcccccCccccCChhhHHHHHHHHHHHHhcCcce
Q psy2890 120 LAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIY 153 (893)
Q Consensus 120 i~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy 153 (893)
+.+| .. ....+......++..+|.++|++|
T Consensus 66 I~~D--e~--y~QSer~~~y~~~~e~L~e~G~AY 95 (445)
T PRK12558 66 INWD--RT--FRQSDRFDRYDEAAEKLKAAGRLY 95 (445)
T ss_pred CCCC--cc--ccHHHHHHHHHHHHHHHHHCCCEE
Confidence 9877 43 334444568899999999999987
No 86
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=97.89 E-value=3.6e-05 Score=89.80 Aligned_cols=95 Identities=25% Similarity=0.315 Sum_probs=72.9
Q ss_pred EEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q psy2890 38 FYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSS 117 (893)
Q Consensus 38 ~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 117 (893)
-+++==||.|||.||||||++.++...+|| ...|.-++.+ |+. +|..-..++.+.|.++|+.
T Consensus 52 ~v~tRFAPsPtGyLHIGharaAllN~l~Ar--~~gG~~iLRi---EDT-------------Dp~R~~~e~~d~IleDL~W 113 (601)
T PTZ00402 52 KVVTRFPPEASGFLHIGHAKAALINSMLAD--KYKGKLVFRF---DDT-------------NPSKEKEHFEQAILDDLAT 113 (601)
T ss_pred eeEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEE---cCC-------------CCcccCHHHHHHHHHHHHH
Confidence 477888999999999999999999999998 4566544443 332 2444455678999999999
Q ss_pred cCCcccccCccccCChhhHHHHHHHHHHHHhcCcce
Q psy2890 118 LGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIY 153 (893)
Q Consensus 118 lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy 153 (893)
||+..| .. .+..++|...-.+...+|.++|++|
T Consensus 114 LGl~wD--e~-~~~QSdr~d~y~e~a~~Li~~G~AY 146 (601)
T PTZ00402 114 LGVSWD--VG-PTYSSDYMDLMYEKAEELIKKGLAY 146 (601)
T ss_pred CCCCCC--Cc-eeeccccHHHHHHHHHHHHHcCCEE
Confidence 999554 42 2344567788888999999999999
No 87
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=97.89 E-value=2.1e-05 Score=90.84 Aligned_cols=93 Identities=24% Similarity=0.327 Sum_probs=67.6
Q ss_pred EecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC
Q psy2890 41 CSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGL 120 (893)
Q Consensus 41 ~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 120 (893)
+==+|.|||.||||||++.++...+|| +..|.-++.+=-+| +..-..++.+.|.++|+.||+
T Consensus 3 tRFaPsPtG~LHiG~ar~al~n~~~A~--~~~G~~iLRieDTd----------------~~r~~~e~~~~I~~dL~wLG~ 64 (522)
T TIGR00440 3 TRFPPEPNGYLHIGHAKSICLNFGYAK--YYNGTCNLRFDDTN----------------PVKEDPEYVESIKRDVEWLGF 64 (522)
T ss_pred EecCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEEcCCC----------------cccCChHHHHHHHHHHHHcCC
Confidence 345799999999999999999999998 55675555443333 233344677899999999999
Q ss_pred cccccCccccCChhhHHHHHHHHHHHHhcCccee
Q psy2890 121 AIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYK 154 (893)
Q Consensus 121 ~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~ 154 (893)
..| +..+ ..+.|.....+...+|+++|++|.
T Consensus 65 ~~d-~~~~--~qS~~~~~~~~~a~~Li~~G~AY~ 95 (522)
T TIGR00440 65 KWE-GKIR--YSSDYFDELYRYAEELIKKGLAYV 95 (522)
T ss_pred CCC-CCce--EccccHHHHHHHHHHHHHcCCEEe
Confidence 765 1223 344455555667789999999993
No 88
>PLN02907 glutamate-tRNA ligase
Probab=97.87 E-value=3.3e-05 Score=93.52 Aligned_cols=96 Identities=25% Similarity=0.350 Sum_probs=74.9
Q ss_pred cEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy2890 37 KFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLS 116 (893)
Q Consensus 37 ~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~ 116 (893)
.-+++==||.|||.||||||++.++...+|| +..|.-++..=-+| |..-..++.+.|.++|+
T Consensus 212 ~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar--~~~G~~iLR~eDTd----------------p~r~~~e~~~~I~~dl~ 273 (722)
T PLN02907 212 GKVCTRFPPEPSGYLHIGHAKAALLNQYFAR--RYKGKLIVRFDDTN----------------PSKESDEFVENILKDIE 273 (722)
T ss_pred CceEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEecCCC----------------CCcCChHHHHHHHHHHH
Confidence 3477888999999999999999999999998 56676555443333 33344567889999999
Q ss_pred HcCCcccccCccccCChhhHHHHHHHHHHHHhcCccee
Q psy2890 117 SLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYK 154 (893)
Q Consensus 117 ~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~ 154 (893)
.||+..| ..+ ..++|...-.+...+|+++|++|.
T Consensus 274 wLG~~~d--~~~--~qS~r~~~y~~~a~~Li~~G~aY~ 307 (722)
T PLN02907 274 TLGIKYD--AVT--YTSDYFPQLMEMAEKLIKEGKAYV 307 (722)
T ss_pred HcCCCCC--Ccc--cccccHHHHHHHHHHHHHcCCeee
Confidence 9999766 554 445666777889999999999995
No 89
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=97.85 E-value=3.4e-05 Score=89.09 Aligned_cols=95 Identities=22% Similarity=0.328 Sum_probs=73.9
Q ss_pred EEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q psy2890 38 FYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSS 117 (893)
Q Consensus 38 ~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 117 (893)
-+++==+|.|||.||||||++.++...+|| ...|.-++.+=-+| |..-..++.+.|.++|+.
T Consensus 11 ~v~tRFAPsPtG~LHiGharaAlln~l~Ar--~~gG~~iLRiEDTD----------------p~R~~~e~~~~I~~dL~W 72 (523)
T PLN03233 11 QIVTRFPPEPSGYLHIGHAKAALLNDYYAR--RYKGRLILRFDDTN----------------PSKEKAEFEESIIEDLGK 72 (523)
T ss_pred eEEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEECCCC----------------CCccchHHHHHHHHHHHH
Confidence 477878899999999999999999999998 45676555443333 334455678899999999
Q ss_pred cCCcccccCccccCChhhHHHHHHHHHHHHhcCccee
Q psy2890 118 LGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYK 154 (893)
Q Consensus 118 lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~ 154 (893)
||+..| ..+ ..+.|...-.+...+|.++|++|.
T Consensus 73 LGl~wD--~~~--~qSdr~~~y~~~a~~Li~~G~AY~ 105 (523)
T PLN03233 73 IEIKPD--SVS--FTSDYFEPIRCYAIILIEEGLAYM 105 (523)
T ss_pred hCCCCC--CCc--cccccHHHHHHHHHHHHHcCCeEe
Confidence 999755 544 445667788889999999999993
No 90
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.84 E-value=4.6e-05 Score=79.49 Aligned_cols=93 Identities=22% Similarity=0.284 Sum_probs=70.0
Q ss_pred EEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Q psy2890 40 TCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLG 119 (893)
Q Consensus 40 i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 119 (893)
++==+|.|||.||+||+++.++.-.+|| ...|.-++.+=-+| +.....++.+.|.++|+.||
T Consensus 3 ~~RFAPsPtG~lHlG~~~~al~~~l~Ar--~~~G~~iLRieDtD----------------~~R~~~~~~~~I~~dL~wlG 64 (238)
T cd00807 3 VTRFPPEPNGYLHIGHAKAILLNFGYAK--KYGGRCNLRFDDTN----------------PEKEEEEYVDSIKEDVKWLG 64 (238)
T ss_pred eEecCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEecCCC----------------CcccchHHHHHHHHHHHHcC
Confidence 4445799999999999999999999987 45675555433332 33344456788999999999
Q ss_pred CcccccCccccCChhhHHHHHHHHHHHHhcCccee
Q psy2890 120 LAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYK 154 (893)
Q Consensus 120 i~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~ 154 (893)
+..| ..+ ..+++.+.-++...+|.++|++|.
T Consensus 65 l~wD--~~~--~QS~r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 65 IKPY--KVT--YASDYFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred CCCC--Cce--ecccCHHHHHHHHHHHHHcCCeec
Confidence 9666 443 344566777888999999999998
No 91
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=97.83 E-value=2.3e-05 Score=86.31 Aligned_cols=92 Identities=24% Similarity=0.305 Sum_probs=63.1
Q ss_pred EecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC
Q psy2890 41 CSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGL 120 (893)
Q Consensus 41 ~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 120 (893)
+==+|.|||.||+||+++.++.-.+|| +..|.-++.+=-+|. ..-..++.+.+.++|+.||+
T Consensus 4 tRFAPsPtG~lHiG~~r~al~n~~~Ar--~~~G~~iLRieDtD~----------------~R~~~~~~~~i~~~L~wlGl 65 (314)
T PF00749_consen 4 TRFAPSPTGYLHIGHARTALLNYLFAR--KYGGKFILRIEDTDP----------------ERCRPEFYDAILEDLRWLGL 65 (314)
T ss_dssp EEE---SSSS-BHHHHHHHHHHHHHHH--HTTSEEEEEEETSST----------------TTCHHHHHHHHHHHHHHHT-
T ss_pred EeeCCCCCCCcccchhHHHHHHHHHHh--ccCceEEEecccccc----------------ccchhhHHHHHHhheeEEEE
Confidence 334699999999999999999999988 667766665544442 22234566889999999999
Q ss_pred cccccCccccCChhhHHHHHHHHHHHHhcCcce
Q psy2890 121 AIDWSREIITCSPKYYKWNQWIFLKMFKRGIIY 153 (893)
Q Consensus 121 ~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy 153 (893)
..| ... ...+.+.+.-+....+|.++|++|
T Consensus 66 ~~D-~~~--~~QS~r~~~Y~~~~~~L~~~g~aY 95 (314)
T PF00749_consen 66 EWD-YGP--YYQSDRLEIYQEAAEKLIDKGKAY 95 (314)
T ss_dssp --S-TCE--EEGGGGHHHHHHHHHHHHHTTSEE
T ss_pred ecC-CeE--EeHHHHHHHHHHHHHHHhhcCCCc
Confidence 777 123 334566677788889999999988
No 92
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=97.81 E-value=4.5e-05 Score=88.41 Aligned_cols=95 Identities=22% Similarity=0.291 Sum_probs=69.4
Q ss_pred EEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q psy2890 38 FYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSS 117 (893)
Q Consensus 38 ~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 117 (893)
-+++==+|.|||.||||||++.++...+|| +..|.-++.. |+.. +..-..++.+.|.++|+.
T Consensus 29 ~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar--~~~G~~iLRi---eDTd-------------~~r~~~e~~~~I~~dL~w 90 (554)
T PRK05347 29 RVHTRFPPEPNGYLHIGHAKSICLNFGLAQ--DYGGKCNLRF---DDTN-------------PEKEDQEYVDSIKEDVRW 90 (554)
T ss_pred ceEEEeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEE---CCCC-------------CCcCChHHHHHHHHHHHH
Confidence 477888999999999999999999999988 4556555443 3333 333445677899999999
Q ss_pred cCCcccccCccccCChhhHHHHHHHHHHHHhcCcce
Q psy2890 118 LGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIY 153 (893)
Q Consensus 118 lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy 153 (893)
||+..|- ..+. .+.|.....+...+|.++|++|
T Consensus 91 LGi~~d~-~~~~--qS~r~~~~y~~a~~Li~~G~AY 123 (554)
T PRK05347 91 LGFDWSG-ELRY--ASDYFDQLYEYAVELIKKGKAY 123 (554)
T ss_pred cCCCCCC-Ccee--eecCHHHHHHHHHHHHHcCCEe
Confidence 9997752 3333 3444455556667999999999
No 93
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=97.80 E-value=5.1e-05 Score=87.81 Aligned_cols=93 Identities=22% Similarity=0.263 Sum_probs=70.6
Q ss_pred EEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Q psy2890 39 YTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSL 118 (893)
Q Consensus 39 ~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~l 118 (893)
+++==+|.|||.||||||++.++...+|| +..|.-++.+ |+.. +..-..++.+.|.++|+.|
T Consensus 52 v~tRFaPsPtG~LHiGharaalln~~~Ar--~~gG~~iLRi---EDTD-------------p~r~~~e~~~~I~~dL~wL 113 (574)
T PTZ00437 52 PYFRFPPEPNGFLHIGHAKSMNLNFGSAR--AHGGKCYLRY---DDTN-------------PETEEQVYIDAIMEMVKWM 113 (574)
T ss_pred EEEEeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEE---CCCC-------------ccccChHHHHHHHHHHHHc
Confidence 66778899999999999999999999988 4556555443 3332 3334456778999999999
Q ss_pred CCcccccCccccCChhhHHHHHHHHHHHHhcCcce
Q psy2890 119 GLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIY 153 (893)
Q Consensus 119 gi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy 153 (893)
|+..| ..+ ..+.|.+...+...+|+++|++|
T Consensus 114 Gi~~D--~~~--~qS~y~~~~ye~A~~Li~~G~AY 144 (574)
T PTZ00437 114 GWKPD--WVT--FSSDYFDQLHEFAVQLIKDGKAY 144 (574)
T ss_pred CCCCC--CCC--cCchhHHHHHHHHHHHHHcCCEE
Confidence 99766 543 34566666667788999999998
No 94
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=4.8e-05 Score=87.29 Aligned_cols=94 Identities=24% Similarity=0.325 Sum_probs=73.2
Q ss_pred EEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Q psy2890 39 YTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSL 118 (893)
Q Consensus 39 ~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~l 118 (893)
+++==+|.|||.||||||++.++...+|| ...|.-++.+=-+| |..-..++.+.|.++|+.|
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar--~~~G~fiLRiEDTD----------------~~R~~~e~~~~I~~~L~WL 71 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYAR--KYGGKFILRIEDTD----------------PERETPEAEDAILEDLEWL 71 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHH--HhCCEEEEEecCCC----------------CCCCCHHHHHHHHHHHHhc
Confidence 67777899999999999999999999988 56787776655544 3333445678899999999
Q ss_pred CCcccccCccccCChhhHHHHHHHHHHHHhcCcce
Q psy2890 119 GLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIY 153 (893)
Q Consensus 119 gi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy 153 (893)
|+..| .. -...+++...-.+...+|+++|++|
T Consensus 72 Gl~wd--e~-~~~QS~r~~~Y~~~~~~Li~~G~AY 103 (472)
T COG0008 72 GLDWD--EG-PYYQSERFDIYYEYAEKLIEKGKAY 103 (472)
T ss_pred CCCCC--Cc-eeehhhhHHHHHHHHHHHHHCCCeE
Confidence 99666 52 2334466677788889999999998
No 95
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=97.75 E-value=5.2e-05 Score=91.64 Aligned_cols=95 Identities=22% Similarity=0.329 Sum_probs=72.5
Q ss_pred EEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q psy2890 38 FYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSS 117 (893)
Q Consensus 38 ~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 117 (893)
-+++==||.|||.|||||+++.++...+|| +..|.-++. +|+.. |..-..++.+.|.++|+.
T Consensus 31 ~v~tRFaPsPtG~lHiGhar~alln~~~A~--~~~G~~~LR---~eDTd-------------~~r~~~e~~~~I~~dl~w 92 (771)
T PRK14703 31 RVVTRFPPEPNGYLHIGHAKSILLNFGIAR--DYGGRCHLR---MDDTN-------------PETEDTEYVEAIKDDVRW 92 (771)
T ss_pred ceEEEeCcCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEE---eCCCC-------------CCcCChHHHHHHHHHHHH
Confidence 377888999999999999999999999987 456644443 34333 333445677899999999
Q ss_pred cCCcccccCccccCChhhHHHHHHHHHHHHhcCcce
Q psy2890 118 LGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIY 153 (893)
Q Consensus 118 lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy 153 (893)
||+..| .. .+..++|.....+...+|+++|++|
T Consensus 93 LG~~wd--~~-~~~qS~~~~~y~~~a~~Li~~G~aY 125 (771)
T PRK14703 93 LGFDWG--EH-LYYASDYFERMYAYAEQLIKMGLAY 125 (771)
T ss_pred cCCCCC--CC-ceEeecCHHHHHHHHHHHHHcCCcc
Confidence 999766 32 2345567777788889999999999
No 96
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=97.73 E-value=7.2e-05 Score=81.07 Aligned_cols=93 Identities=22% Similarity=0.242 Sum_probs=68.6
Q ss_pred EEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Q psy2890 39 YTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSL 118 (893)
Q Consensus 39 ~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~l 118 (893)
+++==.|.|||.||+||+++.++.-.+|| ...|.-++.+==+| +..-..++.+.|.++|+.|
T Consensus 6 v~~RFAPSPTG~LHlG~~rtAL~n~l~Ar--~~~G~~iLRiEDtD----------------~~R~~~~~~~~I~~dL~wl 67 (299)
T PRK05710 6 YIGRFAPSPSGPLHFGSLVAALGSWLDAR--AHGGRWLLRIEDID----------------PPREVPGAADAILADLEWL 67 (299)
T ss_pred eeEEeCcCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEECcCC----------------CCccchHHHHHHHHHHHHC
Confidence 56667899999999999999999988887 44565555543333 2223345568899999999
Q ss_pred CCcccccC-ccccCChhhHHHHHHHHHHHHhcCcce
Q psy2890 119 GLAIDWSR-EIITCSPKYYKWNQWIFLKMFKRGIIY 153 (893)
Q Consensus 119 gi~~Dw~~-~~~T~~~~~~~~v~~~f~~L~~~Gliy 153 (893)
|+..| . .++ .+++.+.-+++..+|.++|++|
T Consensus 68 Gl~wD--e~~~~--QS~r~~~Y~~~~~~L~~~G~aY 99 (299)
T PRK05710 68 GLHWD--GPVLY--QSQRHDAYRAALDRLRAQGLVY 99 (299)
T ss_pred CCCCC--CCceE--eeccHHHHHHHHHHHHHCCCce
Confidence 99655 4 333 3455677788889999999988
No 97
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=97.67 E-value=7.7e-05 Score=84.74 Aligned_cols=88 Identities=16% Similarity=0.276 Sum_probs=68.1
Q ss_pred CCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCccc
Q psy2890 44 LPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGLAID 123 (893)
Q Consensus 44 ~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~D 123 (893)
.|.|||.||+||+++.++.-.+|| +..|.-++.+=-+|. .....++.+.+.++|+.||+..|
T Consensus 5 APSPTG~LHiG~artAL~n~l~Ar--~~gG~fiLRiEDTD~----------------~R~~~e~~~~I~~~L~WlGl~wD 66 (433)
T PRK12410 5 APSPTGDMHIGNLRAAIFNYIVAK--QQNEDFLIRIEDTDK----------------ERNIEGKDKEILEILNLFGISWD 66 (433)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEeCcCCC----------------CcCChHHHHHHHHHHHHcCCCCC
Confidence 589999999999999999999988 667877776655552 22334567889999999999665
Q ss_pred ccCccccCChhhHHHHHHHHHHHHhcCcce
Q psy2890 124 WSREIITCSPKYYKWNQWIFLKMFKRGIIY 153 (893)
Q Consensus 124 w~~~~~T~~~~~~~~v~~~f~~L~~~Gliy 153 (893)
..|+.+ ++...-.+...+|.++|.+|
T Consensus 67 --e~y~QS--eR~~~Y~~~a~~Li~~G~AY 92 (433)
T PRK12410 67 --KLVYQS--ENLKFHRQMAEKLLSEKKAF 92 (433)
T ss_pred --CCeehh--ccHHHHHHHHHHHHHcCCee
Confidence 655444 44456677889999999988
No 98
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=97.63 E-value=8.7e-05 Score=86.19 Aligned_cols=92 Identities=18% Similarity=0.256 Sum_probs=66.9
Q ss_pred EecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC
Q psy2890 41 CSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGL 120 (893)
Q Consensus 41 ~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 120 (893)
+=-+|.|||.|||||+++.++.-.+|| ...|.-++.+=-+| +.....++.+.|.++|+.||+
T Consensus 4 ~RfAPsPtG~lHiG~~rtal~n~l~Ar--~~~G~~iLRieDtD----------------~~R~~~~~~~~i~~~L~wlGl 65 (470)
T TIGR00464 4 TRFAPSPTGYLHIGGARTALFNYLFAK--HTGGEFILRIEDTD----------------LERNIEEAEEAILEGLKWLGI 65 (470)
T ss_pred EeeCCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEeCcCC----------------CccCChHHHHHHHHHHHHCCC
Confidence 445799999999999999999999988 55676565554443 222334567889999999999
Q ss_pred cccccCccccCChhhHHHHHHHHHHHHhcCcce
Q psy2890 121 AIDWSREIITCSPKYYKWNQWIFLKMFKRGIIY 153 (893)
Q Consensus 121 ~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy 153 (893)
..| ...|+. .++.+.-+.+..+|.++|++|
T Consensus 66 ~~d-e~~~~Q--S~r~~~y~~~~~~L~~~g~aY 95 (470)
T TIGR00464 66 SWD-EGPYYQ--SQRLDIYKKYAKELLEEGLAY 95 (470)
T ss_pred CCC-CCeeeh--hCCHHHHHHHHHHHHHcCCEE
Confidence 655 133333 344455677889999999988
No 99
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=97.63 E-value=9.9e-05 Score=76.97 Aligned_cols=89 Identities=24% Similarity=0.323 Sum_probs=65.9
Q ss_pred EEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Q psy2890 40 TCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLG 119 (893)
Q Consensus 40 i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 119 (893)
++=-+|.|||.||+||+++.++.-.+|| +..|.-++.+=-+|. ..-..++.+.|.++|+.||
T Consensus 3 ~~RFAPsPtG~lHlG~~r~al~n~l~Ar--~~~G~~iLRieDtD~----------------~R~~~~~~~~I~~dL~wlG 64 (230)
T cd00418 3 VTRFAPSPTGYLHIGHARTALFNFAFAR--KYGGKFILRIEDTDP----------------ERSRPEYVESILEDLKWLG 64 (230)
T ss_pred eEEeCCCCCCcccHHHHHHHHHHHHHHH--HcCCeEEEEeCcCCC----------------CCCChHHHHHHHHHHHHcC
Confidence 3445799999999999999999999988 456766665544442 2233456788999999999
Q ss_pred CcccccC-ccccCChhhHHHHHHHHHHHHhcC
Q psy2890 120 LAIDWSR-EIITCSPKYYKWNQWIFLKMFKRG 150 (893)
Q Consensus 120 i~~Dw~~-~~~T~~~~~~~~v~~~f~~L~~~G 150 (893)
+..| . .++ ..++.+.-++...+|.++|
T Consensus 65 l~wd--~~~~~--QS~r~~~y~~~~~~L~~~g 92 (230)
T cd00418 65 LDWD--EGPYR--QSDRFDLYRAYAEELIKKG 92 (230)
T ss_pred CCCC--CCeee--hhcCHHHHHHHHHHHHHcC
Confidence 9666 5 333 4455666678889999999
No 100
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=97.56 E-value=0.00012 Score=85.12 Aligned_cols=95 Identities=21% Similarity=0.220 Sum_probs=70.4
Q ss_pred EEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Q psy2890 39 YTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSL 118 (893)
Q Consensus 39 ~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~l 118 (893)
+++==+|.|||.||+||+|+.++.-.+|| +..|.-++.+=-+|. ......+.+.+.++|+.|
T Consensus 5 v~~RfAPSPtG~lHiG~~rtal~n~l~Ar--~~~G~fiLRieDtD~----------------~R~~~~~~~~i~~~L~wl 66 (476)
T PRK01406 5 VRTRFAPSPTGYLHIGGARTALFNWLFAR--HHGGKFILRIEDTDQ----------------ERSTEEAEEAILEGLKWL 66 (476)
T ss_pred eeEEeCCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEeCcCCC----------------CCCChHHHHHHHHHHHHC
Confidence 45556799999999999999999998888 567766666554442 223445678899999999
Q ss_pred CCcccccCc-----c-ccCChhhHHHHHHHHHHHHhcCcce
Q psy2890 119 GLAIDWSRE-----I-ITCSPKYYKWNQWIFLKMFKRGIIY 153 (893)
Q Consensus 119 gi~~Dw~~~-----~-~T~~~~~~~~v~~~f~~L~~~Gliy 153 (893)
|+..| .. | -...+++.+.-++...+|.++|++|
T Consensus 67 Gl~~D--e~p~~~~~gpy~QS~r~~~y~~~~~~L~~~g~aY 105 (476)
T PRK01406 67 GLDWD--EGPDGGPYGPYRQSERLDIYKEYAEQLLEEGKAY 105 (476)
T ss_pred CCCCC--CCCccCCCCceehhcCHHHHHHHHHHHHHcCCee
Confidence 99666 33 0 1233455567788889999999988
No 101
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.56 E-value=0.00016 Score=83.54 Aligned_cols=94 Identities=27% Similarity=0.317 Sum_probs=69.9
Q ss_pred EEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Q psy2890 39 YTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSL 118 (893)
Q Consensus 39 ~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~l 118 (893)
+++--.|.|||.||+||+|+.++.-.+|| +..|.-++.+=-+| +.....++.+.+.++|+.|
T Consensus 5 vrtRFAPSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLRIEDTD----------------~~R~~~~~~~~i~~~L~WL 66 (513)
T PRK14895 5 VITRFAPSPTGFLHIGSARTALFNYLFAR--HHNGKFLLRIEDTD----------------KERSTKEAVEAIFSGLKWL 66 (513)
T ss_pred eeEeeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECCCC----------------ccccChHHHHHHHHHHHHc
Confidence 34556799999999999999999999998 56777776655444 2233446678899999999
Q ss_pred CCcccccCccccCChhhHHHHHHHHHHHHhcCcce
Q psy2890 119 GLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIY 153 (893)
Q Consensus 119 gi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy 153 (893)
|+..| ...|+.+ +....-.+...+|.++|.+|
T Consensus 67 Gl~wD-e~py~QS--eR~~~Y~~~a~~Li~~G~AY 98 (513)
T PRK14895 67 GLDWN-GEVIFQS--KRNNLYKEAALKLLQNGKAY 98 (513)
T ss_pred CCCCC-CCceeEe--CcHHHHHHHHHHHHHcCCeE
Confidence 99554 1334443 34456678889999999988
No 102
>PLN02859 glutamine-tRNA ligase
Probab=97.48 E-value=0.00027 Score=84.74 Aligned_cols=93 Identities=18% Similarity=0.307 Sum_probs=66.9
Q ss_pred EEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Q psy2890 39 YTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSL 118 (893)
Q Consensus 39 ~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~l 118 (893)
+++-=||.|||.||||||++.++...+||. ..|.-.+. +|+.. |..-..++.+.|.++++.|
T Consensus 265 V~tRFaPsPtG~LHiGharaallN~~~Ar~--~~G~~~LR---ieDTd-------------p~r~~~e~~~~I~edL~WL 326 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAKE--RGGCCYLR---FDDTN-------------PEAEKKEYIDHIEEIVEWM 326 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEE---ecCCC-------------CCccchHHHHHHHHHHHHc
Confidence 667778999999999999999999999884 45654443 33333 3344556789999999999
Q ss_pred CCcccccCccccCChhhHHHHHHHHHHHHhcCcce
Q psy2890 119 GLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIY 153 (893)
Q Consensus 119 gi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy 153 (893)
|+ +|+..++++ .|.+...+...+|+++|++|
T Consensus 327 G~--~~d~~~~qS--d~f~~~Y~~A~~Li~~G~AY 357 (788)
T PLN02859 327 GW--EPFKITYTS--DYFQELYELAVELIRRGHAY 357 (788)
T ss_pred CC--CCCCccccc--HhHHHHHHHHHHHHHcCCeE
Confidence 96 454654443 44433334567799999998
No 103
>PLN02627 glutamyl-tRNA synthetase
Probab=97.38 E-value=0.00029 Score=81.63 Aligned_cols=95 Identities=24% Similarity=0.259 Sum_probs=70.5
Q ss_pred EEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Q psy2890 39 YTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSL 118 (893)
Q Consensus 39 ~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~l 118 (893)
+++==.|.|||.||+||+|+.++.-.+|| +..|.-++.+=-+|. .....++.+.|.++|+.|
T Consensus 46 vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar--~~gG~fiLRIEDTD~----------------~R~~~e~~~~I~~~L~WL 107 (535)
T PLN02627 46 VRVRFAPSPTGNLHVGGARTALFNYLFAR--SKGGKFVLRIEDTDL----------------ARSTKESEEAVLRDLKWL 107 (535)
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCC----------------CCCChHHHHHHHHHHHHc
Confidence 55666789999999999999999999988 667877776655552 223445678899999999
Q ss_pred CCcccccCccc-------cCChhhHHHHHHHHHHHHhcCcce
Q psy2890 119 GLAIDWSREII-------TCSPKYYKWNQWIFLKMFKRGIIY 153 (893)
Q Consensus 119 gi~~Dw~~~~~-------T~~~~~~~~v~~~f~~L~~~Gliy 153 (893)
|+..| .... ...+++.+.-.+...+|.++|.+|
T Consensus 108 Gl~wD--egp~~gg~~gpy~QSeR~~~Y~~~a~~Li~~G~AY 147 (535)
T PLN02627 108 GLDWD--EGPDVGGEYGPYRQSERNAIYKQYAEKLLESGHVY 147 (535)
T ss_pred CCCCC--cCcccCCCCCCeeeeccHHHHHHHHHHHHHcCCee
Confidence 99555 4211 123344566678889999999988
No 104
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.13 E-value=0.0011 Score=69.76 Aligned_cols=89 Identities=20% Similarity=0.271 Sum_probs=61.4
Q ss_pred EEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Q psy2890 40 TCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLG 119 (893)
Q Consensus 40 i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 119 (893)
++--+|.|||.||+||+++.++.-.++| +..|.-++ =+|+.. +..-..++.+.+.++|..||
T Consensus 3 ~~RfAPsPtG~LHlG~~~~al~n~l~ar--~~~G~~il---RieDtd-------------~~r~~~~~~~~i~~dL~wlG 64 (239)
T cd00808 3 RTRFAPSPTGFLHIGGARTALFNYLFAR--KHGGKFIL---RIEDTD-------------QERSVPEAEEAILEALKWLG 64 (239)
T ss_pred eEEeCCCCCCcccHHHHHHHHHHHHHHH--HcCCeEEE---EECcCC-------------CCCCchHHHHHHHHHHHHcC
Confidence 3445799999999999999999998888 34553333 344422 11122345688999999999
Q ss_pred CcccccC---------ccccCChhhHHHHHHHHHHHHhcC
Q psy2890 120 LAIDWSR---------EIITCSPKYYKWNQWIFLKMFKRG 150 (893)
Q Consensus 120 i~~Dw~~---------~~~T~~~~~~~~v~~~f~~L~~~G 150 (893)
+..| . .+..+ ...........+|.++|
T Consensus 65 l~~d--~~~~~~g~~~~~~QS--~r~~~y~~~~~~L~~~g 100 (239)
T cd00808 65 LDWD--EGPDVGGPYGPYRQS--ERLEIYRKYAEKLLEKG 100 (239)
T ss_pred CCCC--cCCccCCCCCCEeee--CCHHHHHHHHHHHHHcC
Confidence 9555 6 34443 45566677788888888
No 105
>KOG4426|consensus
Probab=97.11 E-value=0.0027 Score=69.52 Aligned_cols=131 Identities=15% Similarity=0.152 Sum_probs=96.6
Q ss_pred CCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccH----HHHHHHHHc--------------
Q psy2890 35 NGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGM----PAENAAILN-------------- 96 (893)
Q Consensus 35 ~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~----pie~~a~~~-------------- 96 (893)
.++.+|-..-||.-..+|+||+|+.+++|.++|.+...|+.|+..--.-+.|+ -|+..-.+-
T Consensus 187 ~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vsp~IgDLQ 266 (656)
T KOG4426|consen 187 VKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVSPPIGDLQ 266 (656)
T ss_pred eeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEeeccccchHHHHHHHHHHHHHhCCchhccCCCchhHH
Confidence 56677777889999999999999999999999999999999987755544443 344322210
Q ss_pred ----------------------------CCCH------HHHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHH
Q psy2890 97 ----------------------------NTSP------AKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWI 142 (893)
Q Consensus 97 ----------------------------g~~~------~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~ 142 (893)
|-+| ..+|+-..+.+...+++|.|+.- .--++-|...+..+
T Consensus 267 vFYkeSKkrFD~deeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l~-----e~GESFYq~~m~~v 341 (656)
T KOG4426|consen 267 VFYKESKKRFDEDEEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISLK-----ERGESFYQDRMAEV 341 (656)
T ss_pred HHHHHHHhccCcCHHHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHhcchHh-----hcchhhhhhHHHHH
Confidence 1111 22455566788889999999886 12456788889999
Q ss_pred HHHHHhcCcceeec-eeeeecCCCCcccc
Q psy2890 143 FLKMFKRGIIYKKT-GIVNWDPIEKTVLA 170 (893)
Q Consensus 143 f~~L~~~Gliy~~~-~~v~~~~~~~t~l~ 170 (893)
.+.|..+|++...+ +.+-|-+.|.-+|.
T Consensus 342 veel~~kglvee~~Gr~i~f~~g~~IPLt 370 (656)
T KOG4426|consen 342 VEELKSKGLVEEDDGRRIMFPEGCDIPLT 370 (656)
T ss_pred HHHHhcCCceeecCCceEeccCCCCcceE
Confidence 99999999999776 56677776665553
No 106
>KOG1147|consensus
Probab=96.98 E-value=0.0019 Score=72.64 Aligned_cols=99 Identities=25% Similarity=0.346 Sum_probs=76.7
Q ss_pred EEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q psy2890 38 FYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSS 117 (893)
Q Consensus 38 ~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 117 (893)
-+++-=||-|+|.||||||...++---++ ++.+| ..++-||+. .|.+-..+..+.+.+++..
T Consensus 200 kVv~RFPPEpSGyLHIGHAKAALLNqYfa--~~~~G---~LIvRFDDT-------------NPaKE~~eFe~~IleDl~~ 261 (712)
T KOG1147|consen 200 KVVTRFPPEPSGYLHIGHAKAALLNQYFA--QAYQG---KLIVRFDDT-------------NPAKENEEFEDVILEDLSL 261 (712)
T ss_pred ceEEecCCCCCceeehhhHHHHHHHHHHH--HhcCc---eEEEEecCC-------------CcchhhHHHHHHHHHHHHH
Confidence 46677789999999999999876654442 23344 344556654 3555566777889999999
Q ss_pred cCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeecee
Q psy2890 118 LGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGI 158 (893)
Q Consensus 118 lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~ 158 (893)
|||..| ..|..+.|-..+...-.+|++.|-+|-++.|
T Consensus 262 LgIkpd----~~TyTSDyF~~i~dycv~likeGKAYvDDTp 298 (712)
T KOG1147|consen 262 LGIKPD----RVTYTSDYFDEIMDYCVKLIKEGKAYVDDTP 298 (712)
T ss_pred hCcCcc----eeeechhhHHHHHHHHHHHHhcCcccccCCc
Confidence 999999 4577788999999999999999999977665
No 107
>KOG1195|consensus
Probab=96.49 E-value=0.026 Score=63.71 Aligned_cols=147 Identities=16% Similarity=0.172 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhCCCcccCCCCCCCCCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCcccccc---------
Q psy2890 10 IEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPM--------- 80 (893)
Q Consensus 10 iE~~~~~~W~~~~~f~~~~~~~~~~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~--------- 80 (893)
++.-.+..|++...|......+ .++.+|--.-|+.+.+.|+||.|..+++-.++...+..|++|..+-
T Consensus 87 ~k~~l~~i~~~~~~~g~~~~~~---~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQF 163 (567)
T KOG1195|consen 87 IKSVLPIIEEQREKYGKNELGS---GKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQF 163 (567)
T ss_pred HHHHHHHHHHHhcccCcccccc---CceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHHh
Confidence 4555677788877777664333 5677777788999999999999999999999999999999997543
Q ss_pred -----ccccccH-------HHHHHH---------HHcCCC-------------------HH---HHHHHHHHHHHHHHHH
Q psy2890 81 -----GWDAFGM-------PAENAA---------ILNNTS-------------------PA---KWTYDNVSYMKKQLSS 117 (893)
Q Consensus 81 -----G~D~~G~-------pie~~a---------~~~g~~-------------------~~---~~~~~~~~~~~~~l~~ 117 (893)
||..+|. ||...- .+...+ .+ .+.+-.+....+.++|
T Consensus 164 gll~~g~~~~g~e~~L~~~pI~hL~dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~R 243 (567)
T KOG1195|consen 164 GLLALGFQLYGDEEELQLNPIKHLFDVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNR 243 (567)
T ss_pred hHHhccHHhhCchhhhccchHHHHHHHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 4444443 333210 000000 01 1334456777888999
Q ss_pred cCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeeeec
Q psy2890 118 LGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWD 162 (893)
Q Consensus 118 lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~ 162 (893)
||+.|| .|.--+..+.+..+.+...+.++||+...++....+
T Consensus 244 l~v~FD---~y~gESqv~~e~~~~~~d~~rs~~l~~e~dG~~vid 285 (567)
T KOG1195|consen 244 LNVKFD---EYSGESQVSNEKMQEALDLLRSANLTEEIDGTIVID 285 (567)
T ss_pred hceeee---eccchHHHHHHHHHHHHHHHHhcCCcccCCCcEEEE
Confidence 999999 222233467778888888888888776665554443
No 108
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=96.05 E-value=0.0082 Score=75.70 Aligned_cols=80 Identities=20% Similarity=0.417 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHh-hCC
Q psy2890 136 YKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKK-KLP 214 (893)
Q Consensus 136 ~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~-~~~ 214 (893)
.++-..+...|.++|++.+.+.. +...|.|+|||.+++.+..+||||+++++++.+++.+++ ...
T Consensus 314 ~~ar~~i~~~L~~~g~l~~~~~~--------------~~~~p~~~R~g~~ve~~~~~qWFi~~~~~~~~~~~~~~~~~i~ 379 (861)
T TIGR00422 314 FEARKKIVEDLKEEGLLVKIEPH--------------THNVGTCWRSGTVVEPLLSKQWFVKVEKLADKALEAAEEGEIK 379 (861)
T ss_pred HHhHHHHHHHHHhCCCeeeeeee--------------eccCCEeCCCCCEEEEEecCcceEecHHHHHHHHHHhhcCCeE
Confidence 45667788999999998755433 222478999999999999999999999999999999832 233
Q ss_pred CChHHHHHHHHhhcc
Q psy2890 215 YWPKKVRLMQVNWIG 229 (893)
Q Consensus 215 ~~p~~~~~~~~~wi~ 229 (893)
-+|+++++...+||.
T Consensus 380 ~~P~~~~~~~~~wl~ 394 (861)
T TIGR00422 380 FVPKRMEKRYLNWLR 394 (861)
T ss_pred EEChHHHHHHHHHHh
Confidence 269999999999996
No 109
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=96.04 E-value=0.0094 Score=76.17 Aligned_cols=81 Identities=19% Similarity=0.247 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhh-C
Q psy2890 135 YYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKK-L 213 (893)
Q Consensus 135 ~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~-~ 213 (893)
..+.-..+...|.++|++...+... -..|.||||+.+|+++..+||||+++.|++.+++.+++. +
T Consensus 330 ~~ear~~Ii~~L~~~g~l~~~~~~~--------------h~~~~c~R~~~~ie~~~s~qWFi~l~~~k~~~~~~v~~~~~ 395 (1052)
T PRK14900 330 RFEARKEVKRLLAEQGLDRGAKPHV--------------LPLGRCQRSATILEPLLSDQWYVRIEPLARPAIEAVEQGRT 395 (1052)
T ss_pred HHHHHHHHHHHHHhCCCeecceeee--------------ccCceeCCCCceEEEEeccceeeehHHHHHHHHHHHhcCCc
Confidence 3455667888999999987653321 113899999999999999999999999999999999321 3
Q ss_pred CCChHHHHHHHHhhcc
Q psy2890 214 PYWPKKVRLMQVNWIG 229 (893)
Q Consensus 214 ~~~p~~~~~~~~~wi~ 229 (893)
.-+|++.++...+||.
T Consensus 396 ~~~P~~~~~~~~~wl~ 411 (1052)
T PRK14900 396 RFIPEQWTNTYMAWMR 411 (1052)
T ss_pred EEEChHHHHHHHHHHh
Confidence 3379999999999996
No 110
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=95.97 E-value=0.0073 Score=76.85 Aligned_cols=80 Identities=16% Similarity=0.380 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCC
Q psy2890 135 YYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLP 214 (893)
Q Consensus 135 ~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 214 (893)
..++-..+...|.++|++.+...... .-|.|||||.+++++.++|||++++++++.+++.+ ++..
T Consensus 361 v~eA~~~Ii~~L~~~g~l~~~~~~~h--------------~~p~c~R~g~pv~~~~~~qWFi~~~~~k~~ll~~~-~~i~ 425 (975)
T PRK06039 361 VKDADKEIIRDLKERGLLFKAETYEH--------------SYPHCWRCDTPLIYYATESWFIRVTKIKDRMLELN-QKIN 425 (975)
T ss_pred HHHhhHHHHHHHHhCCCEeeeeeecC--------------CCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHhh-CCeE
Confidence 34566778899999999876543211 13789999999999999999999999999999988 5544
Q ss_pred CChHHHHH-HHHhhcc
Q psy2890 215 YWPKKVRL-MQVNWIG 229 (893)
Q Consensus 215 ~~p~~~~~-~~~~wi~ 229 (893)
-.|+.++. ...+||.
T Consensus 426 ~~P~~~~~~~~~~wl~ 441 (975)
T PRK06039 426 WYPEHIKDGRFGKWLE 441 (975)
T ss_pred EECcccchhhHHHHHh
Confidence 35999988 8899996
No 111
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=95.82 E-value=0.18 Score=49.74 Aligned_cols=109 Identities=6% Similarity=0.027 Sum_probs=74.3
Q ss_pred hhCchhHHHHHHhcCCCCCCcccChhhhhHH--------HHHHHHHHHHHHhhhhccccccccccccCCccccCC-ChhH
Q psy2890 652 TYGADSTRLFIIFSAPPEKNLEWSDIGIEGA--------YRFLNRVWNFSYILAPRIINIINLNIFHNDFSVIKF-NNNQ 722 (893)
Q Consensus 652 ~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~--------~~~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D 722 (893)
+.|.|++|+++++.+ ..++++||.+.+... .--..|+.|.++...........+ +...+ .+.+
T Consensus 2 ~i~~~a~~~~~l~~~-~~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~~~~~~~~~-------~~~ll~~~~E 73 (156)
T cd07956 2 EVGVGAVKYQDLSNK-RIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGETIEAEADA-------DLSLLPEPDE 73 (156)
T ss_pred ccchhHHHHHHHhcC-CCCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCCcCcccccc-------chhhcCCHHH
Confidence 468899999999764 588999999875431 122345555544432100000011 11112 4567
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccc
Q psy2890 723 KVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIFNILERINSETKF 768 (893)
Q Consensus 723 ~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fvn~l~~~~k~~~~ 768 (893)
+.++..+..+.+.+..++.+.+++.++..+.++...+++|+...+.
T Consensus 74 ~~L~~~l~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~ffd~v~V 119 (156)
T cd07956 74 RDLILLLAKFPEVVKNAAETLEPHTIATYLFDLAHAFSKFYNACPV 119 (156)
T ss_pred HHHHHHHHHhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcc
Confidence 8888999999999999999999999999999999999998855433
No 112
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=95.81 E-value=0.016 Score=73.21 Aligned_cols=80 Identities=19% Similarity=0.299 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHh-hCC
Q psy2890 136 YKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKK-KLP 214 (893)
Q Consensus 136 ~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~-~~~ 214 (893)
.++-..+...|.++|++...+.. +-..|.|+|||.+|+.+-.+||||+++++++.+++.+++ .+.
T Consensus 316 ~~ar~~i~~~L~~~g~l~~~~~~--------------~~~~p~~~R~~~~i~~~~~~QWFi~~~~~~~~~~~~v~~~~i~ 381 (874)
T PRK05729 316 FEARKAIVADLEELGLLVKIEPH--------------THSVGHSDRSGVVIEPYLSDQWFVKMKPLAKPALEAVENGEIK 381 (874)
T ss_pred HHHHHHHHHHHHhCCCeeeeEEe--------------eccCCeeCCCCceEEEEecCcceEehHHHHHHHHHHHhcCCcE
Confidence 34556788899999998654332 123488999999999999999999999999999999832 233
Q ss_pred CChHHHHHHHHhhcc
Q psy2890 215 YWPKKVRLMQVNWIG 229 (893)
Q Consensus 215 ~~p~~~~~~~~~wi~ 229 (893)
-+|++.++...+||.
T Consensus 382 ~~P~~~~~~~~~wl~ 396 (874)
T PRK05729 382 FVPERWEKTYFHWME 396 (874)
T ss_pred EEChHHHHHHHHHHh
Confidence 489999999999996
No 113
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=95.74 E-value=0.015 Score=72.82 Aligned_cols=79 Identities=24% Similarity=0.318 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCC
Q psy2890 136 YKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPY 215 (893)
Q Consensus 136 ~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 215 (893)
.++-..+...|.++|++........ .-+.|+|||.+++.+..+||||+++++++.+++.+ +...-
T Consensus 314 ~~a~~~i~~~L~~~g~~~~~~~~~~--------------~~p~~~r~~~~v~~~~~~qwfl~~~~~~~~~~~~~-~~~~~ 378 (800)
T PRK13208 314 EEARKKIVEDLKSGGLLGKQEPIKH--------------NVKFCERCDTPLEILVTRQWFIKVLDLKEELLERG-KEINW 378 (800)
T ss_pred HHHHHHHHHHHHhCCCeeceeeeec--------------cCCccCCCCCEEEEeccceeeEeCHHHHHHHHHhh-cCcEE
Confidence 4556778889999999764432211 12679999999999999999999999999999999 66654
Q ss_pred ChHHHHHHHHhhcc
Q psy2890 216 WPKKVRLMQVNWIG 229 (893)
Q Consensus 216 ~p~~~~~~~~~wi~ 229 (893)
+|++.++...+||.
T Consensus 379 ~P~~~~~~~~~~l~ 392 (800)
T PRK13208 379 YPEHMRVRLENWIE 392 (800)
T ss_pred ECHHHHHHHHHHHH
Confidence 79999999999996
No 114
>KOG1148|consensus
Probab=95.63 E-value=0.029 Score=64.20 Aligned_cols=94 Identities=23% Similarity=0.436 Sum_probs=65.0
Q ss_pred EEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q psy2890 38 FYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSS 117 (893)
Q Consensus 38 ~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 117 (893)
-++|-=||=|||.|||||+-..-+- --|.+..|=-++.. +|+ ..|+.-..++...|++....
T Consensus 248 kV~TRFPPEPNG~LHIGHaKAInvN---FgyAk~~~G~cyLR--fDD-------------TNPEkEee~yf~sI~e~V~W 309 (764)
T KOG1148|consen 248 KVVTRFPPEPNGILHIGHAKAINVN---FGYAKAHGGVCYLR--FDD-------------TNPEKEEEEYFESIKEMVAW 309 (764)
T ss_pred eeEEeCCCCCCceeeecchhheeec---hhhhhhhCCeEEEe--cCC-------------CCcchhhHHHHHHHHHHHHH
Confidence 3677789999999999998642111 01222222222211 221 34666777888999999999
Q ss_pred cCCcccccCccccCChhhHHHHHHHHHHHHhcCcce
Q psy2890 118 LGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIY 153 (893)
Q Consensus 118 lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy 153 (893)
||... +-.|.++.|-...-.+-.+|+++|++|
T Consensus 310 LG~~P----~kvTysSDyFdqLy~~av~LIrkG~AY 341 (764)
T KOG1148|consen 310 LGFEP----YKVTYSSDYFDQLYELAVELIRKGKAY 341 (764)
T ss_pred hCCCc----eeeecchhHHHHHHHHHHHHHhcCcee
Confidence 99754 466888888888888888999999998
No 115
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=95.45 E-value=0.018 Score=72.69 Aligned_cols=78 Identities=21% Similarity=0.374 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCC
Q psy2890 137 KWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYW 216 (893)
Q Consensus 137 ~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 216 (893)
++-..+...|.++|++...+...+ ..+.|||||.+|+.+..+|||++++++++.+++.+ +...-+
T Consensus 381 ~a~~~ii~~L~~~g~l~~~~~~~h--------------~~p~~~R~~~~v~~~~~~QWFi~~~~~k~~~l~~~-~~i~~~ 445 (861)
T TIGR00392 381 KANKIIIEQLKDKGLLLKAEKITH--------------SYPHCWRTKTPVIYRATEQWFIKTKDIKDQMLEQI-KKVNWV 445 (861)
T ss_pred HhHHHHHHHHHhCCCeeeeeeEec--------------CCCccCCCCCEEEEecCccccEEcHHHHHHHHHHh-CCcEEE
Confidence 455678888999998765433321 12689999999999999999999999999999999 666557
Q ss_pred hHHHHHHHHhhcc
Q psy2890 217 PKKVRLMQVNWIG 229 (893)
Q Consensus 217 p~~~~~~~~~wi~ 229 (893)
|+.++....+||.
T Consensus 446 P~~~~~~~~~~l~ 458 (861)
T TIGR00392 446 PEWGEGRFGNWLE 458 (861)
T ss_pred CchHHHHHHHHHh
Confidence 9999999999996
No 116
>PLN02882 aminoacyl-tRNA ligase
Probab=94.95 E-value=0.027 Score=72.50 Aligned_cols=80 Identities=24% Similarity=0.407 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCC
Q psy2890 135 YYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLP 214 (893)
Q Consensus 135 ~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 214 (893)
..++-..+...|.++|++........ ..+.||||+.+++++..+|||++++++++++++.+ +...
T Consensus 382 v~eA~~~Ii~~Lk~~g~L~~~~~~~H--------------syp~cwR~~tpli~~a~~qWFi~~~~~k~~~l~~~-~~i~ 446 (1159)
T PLN02882 382 VKDADKDIIAAIKAKGRLVKSGSITH--------------SYPFCWRSDTPLIYRAVPSWFVKVEEIKDRLLENN-KQTY 446 (1159)
T ss_pred HHHhhHHHHHHHHHCCCccceeeeec--------------CCCEeeCCCCEEEEEecceeEEEcHHHHHHHHHhh-CCcE
Confidence 33455678888889999875443321 13789999999999999999999999999998766 4443
Q ss_pred CC-hHHH-HHHHHhhccc
Q psy2890 215 YW-PKKV-RLMQVNWIGK 230 (893)
Q Consensus 215 ~~-p~~~-~~~~~~wi~~ 230 (893)
| |+.+ ++...+||..
T Consensus 447 -w~P~~~~~~r~~~wl~~ 463 (1159)
T PLN02882 447 -WVPDYVKEKRFHNWLEN 463 (1159)
T ss_pred -EECCcchhhHHHHHHhc
Confidence 6 9999 5799999963
No 117
>PLN02943 aminoacyl-tRNA ligase
Probab=94.74 E-value=0.047 Score=69.35 Aligned_cols=80 Identities=18% Similarity=0.323 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHh-hCC
Q psy2890 136 YKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKK-KLP 214 (893)
Q Consensus 136 ~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~-~~~ 214 (893)
.++-..+...|.++|++...+.. +...|+|+||+.+|+.+-.+|||++++.+++.+++.+.+ .+.
T Consensus 366 ~ear~~iv~~L~~~g~l~~~e~~--------------~~~~p~c~R~~~~Ie~~~~~QWFi~~~~l~~~~l~~v~~~~i~ 431 (958)
T PLN02943 366 FEAREKLWSDLEETGLAVKKEPH--------------TLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALKAVENGELT 431 (958)
T ss_pred HHHHHHHHHHHHHCCCeeeeeee--------------ecCCCeeCCCCcEeEEEeccceeEEHHHHHHHHHHHHhcCCcE
Confidence 34455677888899987644322 123488999999999999999999999999999999832 233
Q ss_pred CChHHHHHHHHhhcc
Q psy2890 215 YWPKKVRLMQVNWIG 229 (893)
Q Consensus 215 ~~p~~~~~~~~~wi~ 229 (893)
-+|+..++...+||.
T Consensus 432 ~~P~~~~~~~~~wl~ 446 (958)
T PLN02943 432 IIPERFEKIYNHWLS 446 (958)
T ss_pred EEChHHHHHHHHHHh
Confidence 479999999999995
No 118
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=94.70 E-value=0.04 Score=70.87 Aligned_cols=80 Identities=21% Similarity=0.347 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCC
Q psy2890 136 YKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPY 215 (893)
Q Consensus 136 ~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 215 (893)
.++-..+...|.++|++........ .-|.|||||.+++++-.+|||++++++++++++.. +...=
T Consensus 487 ~dA~~~Ii~~Lk~~g~L~~~e~~~H--------------~yP~cwR~~tpli~~a~~QWFI~~~~~k~~~l~~~-~~i~w 551 (1205)
T PTZ00427 487 KEADNVIKKKLKNENRLLSNNTIVH--------------SYPFCWRSDTPLIYRAIPAWFIRVSNSTNELVKNN-ETTYW 551 (1205)
T ss_pred HHhHHHHHHHHHhCCCeeeeeeeec--------------cCCEeCCCCCEEEEEecceeEEeCcHHHHHHHHcC-CccEE
Confidence 3455677888999999986544321 13789999999999999999999999999988655 33332
Q ss_pred ChHHH-HHHHHhhccc
Q psy2890 216 WPKKV-RLMQVNWIGK 230 (893)
Q Consensus 216 ~p~~~-~~~~~~wi~~ 230 (893)
.|+.+ ++...+||..
T Consensus 552 ~P~~~~~~r~~~wl~n 567 (1205)
T PTZ00427 552 IPAHIKEKKFHNWIKD 567 (1205)
T ss_pred eCchhhHhHHHHHHhc
Confidence 39998 5899999963
No 119
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=94.64 E-value=0.049 Score=68.91 Aligned_cols=80 Identities=18% Similarity=0.302 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecc--hHHHHHHHHHhh
Q psy2890 135 YYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITN--YAEELLEYVKKK 212 (893)
Q Consensus 135 ~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~--~~~~l~~~~~~~ 212 (893)
..++-..+...|.++|++........ ..+.||||+.+|+++.++|||+++++ +++.+++.+ ++
T Consensus 368 v~ea~~~Ii~~L~~~g~l~~~~~~~h--------------~yp~~wR~~~pvi~r~~~QWFi~~~~~~~k~~~l~~~-~~ 432 (912)
T PRK05743 368 VFKANPKIIEKLEEKGALLKEEKITH--------------SYPHCWRTKKPVIFRATPQWFISMDKKGLREQALKAI-EK 432 (912)
T ss_pred HHHhHHHHHHHHHhCCCeeeeeeeec--------------cCCeecCCCCEEEEEecCcccEeCChHHHHHHHHHHH-cc
Confidence 34566778888999998765543211 13789999999999999999999998 999999999 65
Q ss_pred CCCChHHHHHHHHhhcc
Q psy2890 213 LPYWPKKVRLMQVNWIG 229 (893)
Q Consensus 213 ~~~~p~~~~~~~~~wi~ 229 (893)
..-.|+..++...+||.
T Consensus 433 v~~~P~~~~~r~~~~i~ 449 (912)
T PRK05743 433 VKWIPAWGKNRIESMVE 449 (912)
T ss_pred cEEEChHHHHHHHHHHh
Confidence 54359999999999985
No 120
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=94.40 E-value=0.071 Score=68.31 Aligned_cols=82 Identities=21% Similarity=0.296 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHh-hC
Q psy2890 135 YYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKK-KL 213 (893)
Q Consensus 135 ~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~-~~ 213 (893)
..++-..+...|.++|++.+..... -.-|.|+|||.+|+.+-.+|||++++.+++.+++.+++ .+
T Consensus 359 ~~~ar~~ii~~L~~~g~l~~~~~~~--------------~~~p~~~R~~~~ie~~~~~QWFi~~~~~~~~al~~v~~~~i 424 (995)
T PTZ00419 359 RFDCRRKIEEELKEMGLLRDKVPNP--------------MRLPRCSRSGDIVEPMLIPQWYVNCKDMAKRAVEAVRNGEL 424 (995)
T ss_pred HHHHHHHHHHHHHhcCCEEeeEEee--------------cCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHHhhcCCe
Confidence 3355567888899999987654321 11378999999999999999999999999999998831 22
Q ss_pred CCChHHHHHHHHhhccc
Q psy2890 214 PYWPKKVRLMQVNWIGK 230 (893)
Q Consensus 214 ~~~p~~~~~~~~~wi~~ 230 (893)
.-.|+..++...+||..
T Consensus 425 ~~~P~~~~~~~~~wl~~ 441 (995)
T PTZ00419 425 KIIPSSHENVWYHWLEN 441 (995)
T ss_pred EEEChHHHHHHHHHHhc
Confidence 22599999999999964
No 121
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.40 E-value=0.068 Score=66.10 Aligned_cols=79 Identities=15% Similarity=0.282 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCC
Q psy2890 137 KWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYW 216 (893)
Q Consensus 137 ~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 216 (893)
++-..+...|.++|.+........ ..+.||||..|+.+|-++|||++++.+++++++.+ +...=.
T Consensus 375 dAn~~Ii~~Lk~~g~Ll~~e~i~H--------------sYPhcWR~ktPlIyRAt~QWFi~v~~~r~~~l~~i-~~v~w~ 439 (933)
T COG0060 375 DANKKIIEDLKEKGNLLKSEKIEH--------------SYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEI-NKVNWV 439 (933)
T ss_pred cCCHHHHHHHHhCCceeeeeeEEe--------------CCCcccCCCCeeEEeecchheeEHHHHHHHHHHHH-hcceEE
Confidence 566778888888888776544421 24799999999999999999999999999999777 444323
Q ss_pred hHHHHHHHHhhccc
Q psy2890 217 PKKVRLMQVNWIGK 230 (893)
Q Consensus 217 p~~~~~~~~~wi~~ 230 (893)
|+..+....+||..
T Consensus 440 P~~~~~R~~~mve~ 453 (933)
T COG0060 440 PDWGKNRFGNMVEN 453 (933)
T ss_pred ChhHHHHHHHHHcC
Confidence 88899999999963
No 122
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=94.27 E-value=0.053 Score=65.60 Aligned_cols=80 Identities=21% Similarity=0.410 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCC
Q psy2890 135 YYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLP 214 (893)
Q Consensus 135 ~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 214 (893)
..++-..+...|.++|++....... -.-+.|+|||.+|+.+-.+|||++++++++.+++.+ +++.
T Consensus 333 v~~ar~~ii~~L~~~g~l~~~~~~~--------------~~~p~c~R~~~~ii~~~~~QWFi~~~~~k~~~l~~~-~~i~ 397 (601)
T PF00133_consen 333 VFEAREKIIEDLKEKGLLLKIEEIE--------------HSYPHCWRSGTPIIPRLTDQWFIKYDDWKKKALEAL-EKIK 397 (601)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEEEE--------------EEEEEETTTSCBEEEEEEEEEEEEHHHHHHHHHHHH-HTSE
T ss_pred eeeccHHHHHHHHHhhhhccccccc--------------cccceecCCCCEEEecccceeEEecHHhHHHHHhhc-ccce
Confidence 3467778899999999987543321 112578999999999999999999999999999999 6766
Q ss_pred CChHHHHHHHHhhcc
Q psy2890 215 YWPKKVRLMQVNWIG 229 (893)
Q Consensus 215 ~~p~~~~~~~~~wi~ 229 (893)
-.|+..++...+||.
T Consensus 398 ~~P~~~~~~~~~~i~ 412 (601)
T PF00133_consen 398 FYPESYRKRFENWID 412 (601)
T ss_dssp ESSSTCHHHHHHHHH
T ss_pred EEcccchhhhhhhcc
Confidence 569999999999996
No 123
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=93.84 E-value=0.088 Score=66.93 Aligned_cols=80 Identities=15% Similarity=0.276 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecc-------hHHHHHHH
Q psy2890 136 YKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITN-------YAEELLEY 208 (893)
Q Consensus 136 ~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~-------~~~~l~~~ 208 (893)
.++-..+...|.++|++........ ..+.|||||.+|+.+-.+|||++++. +++.+++.
T Consensus 400 ~ea~~~Ii~~L~~~g~l~~~~~~~h--------------~yp~~wR~~~pii~r~t~QWFi~~~~~~~~~~~~k~~al~~ 465 (961)
T PRK13804 400 GDANKAVIEKLIEAGLLLARGRLKH--------------SYPHSWRSKKPVIFRNTPQWFISMDKDLGDGTTLRSRALDA 465 (961)
T ss_pred hhhhHHHHHHHHhCCCcccccceec--------------CCCccCCCCCeEEEeccccccEEcCCcccchHHHHHHHHHH
Confidence 3566678888889998775443211 13789999999999999999999998 99999988
Q ss_pred HHhhCCCChHHHHHHHHhhccc
Q psy2890 209 VKKKLPYWPKKVRLMQVNWIGK 230 (893)
Q Consensus 209 ~~~~~~~~p~~~~~~~~~wi~~ 230 (893)
+ +...-.|+..+....+||..
T Consensus 466 i-~~v~~~P~~~~~r~~~~i~~ 486 (961)
T PRK13804 466 I-DKTRFVPAAGQNRLYNMIED 486 (961)
T ss_pred H-hccEEECHHHHHHHHHHHhc
Confidence 8 66654699999999999963
No 124
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=93.70 E-value=0.29 Score=62.31 Aligned_cols=164 Identities=13% Similarity=0.093 Sum_probs=96.3
Q ss_pred CCCCcCcc--hHHHh-HH-HHHHHHHHHHHc-------CCcccccccccccc-HHHHHHHHHcCCCHH----HHHHHHHH
Q psy2890 46 YPSGKLHM--GHVRN-YT-INDVMYRYMRMN-------GYNVLMPMGWDAFG-MPAENAAILNNTSPA----KWTYDNVS 109 (893)
Q Consensus 46 ~~nG~lHi--GH~~~-~~-~~Di~~R~~r~~-------G~~V~~~~G~D~~G-~pie~~a~~~g~~~~----~~~~~~~~ 109 (893)
+-||..|. +|.-. |. +.|.-.| ...- .....-+.-.|.+| +|+.....+.|+.-+ ++.+---.
T Consensus 300 ~GTGvV~~~Pah~p~Dy~~~~~l~~~-~~~~gi~~~~~~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~ 378 (938)
T TIGR00395 300 KGTGVVMSVPAHAPDDYIALEDLLHD-PEYLGIKPVVIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKI 378 (938)
T ss_pred CCcceEEeCCCCCHHHHHHHHHhhhc-chhcCCcchhcccCCccceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHH
Confidence 34788887 67654 43 3444333 1111 23334555667777 666666666665321 11110111
Q ss_pred HHHHHHHHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEE
Q psy2890 110 YMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKK 189 (893)
Q Consensus 110 ~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~ 189 (893)
.+++.+ .-|+..+=--.|. -..-.++-..+...|.++|++.....+ . ..+.|+|||.+++.+
T Consensus 379 ~y~~~f-~~G~m~~~~~~~~--G~~v~ear~~i~~~L~~~g~~~~~~~~-----~----------~~~v~~R~g~~~vv~ 440 (938)
T TIGR00395 379 LYKEEY-HTGVMIYNIPPYK--GMKVSEAKEKVKADLIDAGLADVMYEF-----S----------ESPVICRCGTDCIVK 440 (938)
T ss_pred Hhhhhc-cCceeccCCcccC--CcCHHHhHHHHHHHHHHCCCceEeeec-----C----------CCCcEecCCCeEEEe
Confidence 112111 1233222000111 112334556678889999998754322 1 123467999999987
Q ss_pred -eeceeeEEec--chHHHHHHHHHhhCCCChHHHHHHHHhhcc
Q psy2890 190 -KIPMYYAKIT--NYAEELLEYVKKKLPYWPKKVRLMQVNWIG 229 (893)
Q Consensus 190 -~~~~~~~~l~--~~~~~l~~~~~~~~~~~p~~~~~~~~~wi~ 229 (893)
-..||||+++ .+++.+++.+ +.+.-+|+.+++...+||.
T Consensus 441 ~~~~QWFi~~~~~~~k~~~~~~l-~~~~~~P~~~~~~~~~~l~ 482 (938)
T TIGR00395 441 VVEDQWFVKYSDESWKELAHECL-EGMRIIPEEVKNAFEGKID 482 (938)
T ss_pred ccCCCCeEEcCcHHHHHHHHHHH-hcCEEeCHHHHHHHHHHHh
Confidence 8999999999 5999999999 6665589999999999996
No 125
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=93.46 E-value=0.11 Score=56.37 Aligned_cols=68 Identities=19% Similarity=0.371 Sum_probs=39.5
Q ss_pred CCC-cCcchHHHhHHHHHHHHHHHHHcCCccccccccccccH---HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC
Q psy2890 47 PSG-KLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGM---PAENAAILNNTSPAKWTYDNVSYMKKQLSSLGL 120 (893)
Q Consensus 47 ~nG-~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~---pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 120 (893)
||| .||+||..+ -..+.++++ .|+++.+..| |.|++ |.- +..++.....+-..++...+..++.++|+
T Consensus 8 PTg~~lHlGh~~~---l~~~~~lq~-~g~~~~~~I~-d~~a~~~d~sg-~~~~r~~~~~~~i~~n~~~~~~~~~a~g~ 79 (273)
T cd00395 8 PTADSLHIGHLIG---LLTFRRFQH-AGHRPIFLIG-GQTGIIGDPSG-KKSERTLNDPEEVRQNIRRIAAQYLAVGI 79 (273)
T ss_pred CCCCCccHHHHHH---HHHHHHHHH-CCCCEEEEEe-cCceeeCCCCC-ccccccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 679 699999777 223445554 6899877766 22332 110 00111111234555667778888888886
No 126
>PLN02843 isoleucyl-tRNA synthetase
Probab=93.36 E-value=0.12 Score=65.89 Aligned_cols=79 Identities=10% Similarity=0.153 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCC
Q psy2890 137 KWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYW 216 (893)
Q Consensus 137 ~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 216 (893)
++-..+...|.++|++...+... -.-+.||||+.+|+.+-.+|||++++.+++.+++.+ +.+.-.
T Consensus 387 ~a~~~Ii~~L~~~g~l~~~e~~~--------------H~yp~cwR~~~pvi~r~t~QWFi~~~~~k~~al~~~-~~v~~~ 451 (974)
T PLN02843 387 EGNAAVVEALDEAGSLLMEEAYG--------------HKYPYDWRTKKPTIFRATEQWFASVEGFRQAALDAI-DKVKWI 451 (974)
T ss_pred cchHHHHHHHHHCCCeeeeeeec--------------CCCCccCCCCCeEEEEecCceeEeCHHHHHHHHHHH-hccEEE
Confidence 34467888888999755333221 013789999999999999999999999999999998 666656
Q ss_pred hHHHHHHHHhhccc
Q psy2890 217 PKKVRLMQVNWIGK 230 (893)
Q Consensus 217 p~~~~~~~~~wi~~ 230 (893)
|+..++...+||..
T Consensus 452 P~~~~~r~~~~i~~ 465 (974)
T PLN02843 452 PAQGENRIRAMVSG 465 (974)
T ss_pred ChHHHHHHHHHHhc
Confidence 99999999999963
No 127
>KOG1149|consensus
Probab=93.01 E-value=0.22 Score=55.39 Aligned_cols=93 Identities=19% Similarity=0.171 Sum_probs=61.8
Q ss_pred CCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCccc
Q psy2890 44 LPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGLAID 123 (893)
Q Consensus 44 ~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~D 123 (893)
-|.|||.||+|-+|+.+.-=++|| ...|.-++.+=-+|--- .+....+.+.++|+.+|+..|
T Consensus 39 APSPTGfLHlGgLRTALfNYLfAr--k~gGkFiLRiEDTDq~R----------------~v~gs~e~i~~~L~w~nl~~D 100 (524)
T KOG1149|consen 39 APSPTGFLHLGGLRTALFNYLFAR--KKGGKFILRIEDTDQKR----------------LIRGSEEAIYEDLKWANLDWD 100 (524)
T ss_pred cCCCCcceehhhHHHHHHHHHHHH--hcCCeEEEEeccccccc----------------cccchHHHHHHHHHhcCCCcc
Confidence 488999999999998777766666 56788787776666221 222233678899999999877
Q ss_pred ccC-ccccCC----hhhHHHHHHHHHHHHhcCccee
Q psy2890 124 WSR-EIITCS----PKYYKWNQWIFLKMFKRGIIYK 154 (893)
Q Consensus 124 w~~-~~~T~~----~~~~~~v~~~f~~L~~~Gliy~ 154 (893)
=.- ..-... .+-.+.-++..++|.+.|.+|+
T Consensus 101 EgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYr 136 (524)
T KOG1149|consen 101 EGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYR 136 (524)
T ss_pred cCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeE
Confidence 111 001111 2333444566778999999994
No 128
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=92.83 E-value=0.15 Score=55.90 Aligned_cols=42 Identities=24% Similarity=0.523 Sum_probs=28.0
Q ss_pred CCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccc
Q psy2890 35 NGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMG 81 (893)
Q Consensus 35 ~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G 81 (893)
++++.++++.= |||.+||||+... ..+.++++ .|++|.+..|
T Consensus 3 ~~~~~~y~G~~-PTg~lHlG~l~~~---~~~~~lq~-~g~~~~i~ia 44 (292)
T PF00579_consen 3 NKPFRVYTGID-PTGDLHLGHLVPI---MKLIWLQK-AGFKVIILIA 44 (292)
T ss_dssp HSSEEEEEEEE-SSSS-BHHHHHHH---HHHHHHHH-TTSEEEEEEE
T ss_pred CCCcEEEEeEC-CCCcccchHHHHH---HHHHHHHh-cCCccceEec
Confidence 35667777753 6789999987764 23344444 8999888777
No 129
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=92.76 E-value=0.14 Score=55.36 Aligned_cols=71 Identities=23% Similarity=0.303 Sum_probs=41.7
Q ss_pred CCCC-cCcchHHHhHHHHHHHHHHHHHcCCccccccccccc--cHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCc
Q psy2890 46 YPSG-KLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAF--GMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGLA 121 (893)
Q Consensus 46 ~~nG-~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~--G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~ 121 (893)
-||| .+||||.... -.+.|++++ |++|.+..|=.+. |.|.-...+..+.++.+ ..++...+..++..+|..
T Consensus 8 ~PTg~~lHLG~~~~~---~~~~~lq~~-g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~-i~~~~~~~~~~~~a~g~~ 81 (269)
T cd00805 8 DPTAPSLHLGHLVPL---MKLRDFQQA-GHEVIVLIGDATAMIGDPSGKSEERKLLDLEL-IRENAKYYKKQLKAILDF 81 (269)
T ss_pred CCCCCcccHHHHHHH---HHHHHHHHC-CCeEEEEECCCeeecCCCCCccccccCCCHHH-HHHHHHHHHHHHHHHHcc
Confidence 3678 8999997752 357777775 9887766663222 11211111112344443 455566788888888864
No 130
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=92.60 E-value=0.14 Score=60.63 Aligned_cols=51 Identities=18% Similarity=-0.012 Sum_probs=38.9
Q ss_pred cccccCC-------C--------CccCccchhh-hhCchhHHHHHHhcCCCCCCcccChhhhhHHHH
Q psy2890 634 EKMSKSK-------N--------NGIDPQTQIN-TYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYR 684 (893)
Q Consensus 634 ~KMSKSk-------g--------N~i~p~~ii~-~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~~~ 684 (893)
.|||||+ | +..+...+.. .|-++++|-|++..+.-..+..|+.+.+....|
T Consensus 337 ~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~~lG~s~~~~~~~~~~L~~~nr 403 (567)
T PRK04156 337 FVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVKETDATISWENLYAINR 403 (567)
T ss_pred ceeecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHH
Confidence 7999999 3 2233444444 499999999999888767899999999877543
No 131
>PLN02381 valyl-tRNA synthetase
Probab=91.88 E-value=0.25 Score=63.49 Aligned_cols=82 Identities=17% Similarity=0.296 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHH---H-
Q psy2890 135 YYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYV---K- 210 (893)
Q Consensus 135 ~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~---~- 210 (893)
..++-..+...|.++|++....... -.-|.||||+.+|+++-.+|||++++.+++..++.+ .
T Consensus 426 ~~eAr~~Ii~~L~~~g~l~~~~~~~--------------h~~p~c~R~~~~ie~~~~~QWFi~~~~l~~~al~av~~~~~ 491 (1066)
T PLN02381 426 RFAAREAVIEALQKKGLYRGAKNNE--------------MRLGLCSRTNDVVEPMIKPQWFVNCSSMAKQALDAAIDGEN 491 (1066)
T ss_pred HHHHHHHHHHHHHhCCCEecceeee--------------cCCCeeCCCCceEEEeecccceEEchHHHHHHHHHHhhccC
Confidence 3455667888999999987554321 124889999999999999999999999999988776 1
Q ss_pred hhCCCChHHHHHHHHhhccc
Q psy2890 211 KKLPYWPKKVRLMQVNWIGK 230 (893)
Q Consensus 211 ~~~~~~p~~~~~~~~~wi~~ 230 (893)
+.+.-.|+..+....+||..
T Consensus 492 ~~i~~~P~~~~~~~~~wl~n 511 (1066)
T PLN02381 492 KKLEFIPKQYLAEWKRWLEN 511 (1066)
T ss_pred CceEEEChHHHHHHHHHHhc
Confidence 22332599999999999964
No 132
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.83 E-value=0.33 Score=59.57 Aligned_cols=176 Identities=17% Similarity=0.187 Sum_probs=105.0
Q ss_pred cEEEEecCCCCCCc--CcchHHHh-HHHHHHH-------HHHHHHcCCccccccccccccHHHHHH--HH-HcCC-----
Q psy2890 37 KFYTCSMLPYPSGK--LHMGHVRN-YTINDVM-------YRYMRMNGYNVLMPMGWDAFGMPAENA--AI-LNNT----- 98 (893)
Q Consensus 37 ~~~i~~~~P~~nG~--lHiGH~~~-~~~~Di~-------~R~~r~~G~~V~~~~G~D~~G~pie~~--a~-~~g~----- 98 (893)
..+-+.-.|-.+|. +-+---|- .+++|+- .||+.+-|..|..+.=- .-+||..- +. +-|.
T Consensus 194 g~L~~i~y~l~~~~~~i~VATTRPEtmlgdtAVaVhP~DeRYk~LvGk~v~lPl~~--r~IpIiaD~~VD~eFGTG~VkI 271 (877)
T COG0525 194 GKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDDERYKHLVGKEVILPLVG--REIPIIADEYVDPEFGTGAVKI 271 (877)
T ss_pred eeEEEEEEecCCCCceEEEEecCccccccceEEEECCCChhhHhhcCCEEecCCCC--CeeeeecCcccCCcCCCceEEe
Confidence 34444455666554 33333443 6778876 69999999998765321 22333321 11 1121
Q ss_pred C----H--HHHHHHHHHHHHHHHHHcCCccccc-CccccCChhhHHHHHHHHHHHHhcCcceeeceeeeecCCCCccccc
Q psy2890 99 S----P--AKWTYDNVSYMKKQLSSLGLAIDWS-REIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLAN 171 (893)
Q Consensus 99 ~----~--~~~~~~~~~~~~~~l~~lgi~~Dw~-~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~ 171 (893)
+ + -++..++.-.+...+..=|.-.+=. -.|.-+ .-.++=.++...|.++|++.+.+....
T Consensus 272 tpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl--~r~eAR~kIv~~L~~~GlLvk~e~~~h----------- 338 (877)
T COG0525 272 TPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGL--DRFEARKKIVEDLEEQGLLVKIEPHKH----------- 338 (877)
T ss_pred cCCCCchhhhhhhcCCCCceEEECCCCeeccCCccccCCC--cHHHHHHHHHHHHHhCCCeEeeeeccc-----------
Confidence 1 1 2233322222222222222222100 011112 223455788899999999997654321
Q ss_pred chhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHh-hCCCChHHHHHHHHhhccc
Q psy2890 172 EQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKK-KLPYWPKKVRLMQVNWIGK 230 (893)
Q Consensus 172 ~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~-~~~~~p~~~~~~~~~wi~~ 230 (893)
.=|.|+|||.+||..-.+|||++...+++..++..++ ...-.|++..+...+|+..
T Consensus 339 ---~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~f~P~~~~~~~~~W~~~ 395 (877)
T COG0525 339 ---SVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKFVPERMEKRYEDWMEN 395 (877)
T ss_pred ---cCccccCCCceeeeeecceeeEEhHhhHHHHHHHHhcCCceEecHHHHHHHHHHHhh
Confidence 1278999999999999999999999999999988831 3333699999999999973
No 133
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=91.72 E-value=3.3 Score=46.27 Aligned_cols=26 Identities=35% Similarity=0.322 Sum_probs=18.6
Q ss_pred cccccCCCCccCccchhhhhCchhHHHHHHh
Q psy2890 634 EKMSKSKNNGIDPQTQINTYGADSTRLFIIF 664 (893)
Q Consensus 634 ~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~ 664 (893)
.|||||.+|.|...| .+|.++=-+..
T Consensus 195 ~KMSKS~~~~I~L~D-----~pe~I~kKI~~ 220 (333)
T PRK12282 195 AKMSKSLGNAIYLSD-----DADTIKKKVMS 220 (333)
T ss_pred CcCCCCCCCeeeeeC-----CHHHHHHHHHh
Confidence 699999999887665 45555555543
No 134
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=90.97 E-value=0.36 Score=46.85 Aligned_cols=40 Identities=23% Similarity=0.197 Sum_probs=23.1
Q ss_pred ceeeecchhhHHHHHHHHHHHHHHHHHhcCccCCCccceeeecceEec
Q psy2890 538 VDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILN 585 (893)
Q Consensus 538 vD~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pfk~l~~~G~v~~ 585 (893)
.|++++|.||.. |.- ....++...| ..+ ....+..||+.+
T Consensus 94 ~~i~~~G~Dq~~-h~~---~~~~i~~~~~---~~~-~p~~~~~~~l~~ 133 (143)
T cd00802 94 CDIHLGGSDQLG-HIE---LGLELLKKAG---GPA-RPFGLTFGRVMG 133 (143)
T ss_pred cEEEEechhHHH-HHH---HHHHHHHHhC---CCC-CceEEEeCCeEC
Confidence 599999999966 533 2233333333 122 234556689873
No 135
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=90.69 E-value=0.45 Score=60.29 Aligned_cols=79 Identities=13% Similarity=0.072 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEee-ceeeEEec--chHHHHHHHHHh
Q psy2890 135 YYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKI-PMYYAKIT--NYAEELLEYVKK 211 (893)
Q Consensus 135 ~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~-~~~~~~l~--~~~~~l~~~~~~ 211 (893)
..++-..+...|.++|++...... + ..+.|+|||.+++.+-+ +|||++++ .+++.+++.+ +
T Consensus 354 v~eA~~~I~~~L~~~g~~~~~~~~----~-----------~~~~~~R~~~~~i~~~~~~QWFi~~~~~~~k~~~~~~~-~ 417 (897)
T PRK12300 354 VREAREKITKDLIEKGIADIMYEF----S-----------NRPVYCRCGTECVVKVVKDQWFIDYSDPEWKELAHKAL-D 417 (897)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEec----C-----------CCCcCcCCCCEEEEEecCCceEEEcCcHHHHHHHHHHH-c
Confidence 445667788899999998763211 0 02345699999999875 99999998 7999999998 6
Q ss_pred hCCCChHHHHHHHHhhcc
Q psy2890 212 KLPYWPKKVRLMQVNWIG 229 (893)
Q Consensus 212 ~~~~~p~~~~~~~~~wi~ 229 (893)
++.-+|+.+++...+||.
T Consensus 418 ~~~~~P~~~~~~~~~~l~ 435 (897)
T PRK12300 418 NMEIIPEEYRKEFENTID 435 (897)
T ss_pred cCEEECHHHHHHHHHHHh
Confidence 676679999999999985
No 136
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=90.17 E-value=0.34 Score=54.01 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=15.0
Q ss_pred CCceeeecchhhHHHHHHHHHH
Q psy2890 536 MPVDQYIGGIEHAILHLLYARF 557 (893)
Q Consensus 536 ~PvD~~igG~D~~i~Hl~y~rf 557 (893)
+.+|+..+|.||. .|+-.+|=
T Consensus 167 ~~ad~vpvG~DQ~-~h~~l~Rd 187 (329)
T PRK08560 167 LDVDIAVGGMDQR-KIHMLARE 187 (329)
T ss_pred hCCCEEEechhHH-HHHHHHHH
Confidence 3579999999994 46554553
No 137
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=89.80 E-value=0.29 Score=56.07 Aligned_cols=77 Identities=14% Similarity=0.140 Sum_probs=42.5
Q ss_pred CCcEEEEecCCCCCC-cCcchHHHhHHHHHHHHHHHHHcCCcccccccccc--ccHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy2890 35 NGKFYTCSMLPYPSG-KLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDA--FGMPAENAAILNNTSPAKWTYDNVSYM 111 (893)
Q Consensus 35 ~~~~~i~~~~P~~nG-~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~--~G~pie~~a~~~g~~~~~~~~~~~~~~ 111 (893)
++++.++.++= ||| .||+||+.. --.+. ++...|+++++..|=.+ .|.|.-........+.. -..++...+
T Consensus 31 ~~~~~iy~G~d-PT~~sLHlGhlv~---l~~l~-~lq~~G~~~~~ligd~ta~igDpsgk~~~R~~l~~e-~i~~n~~~i 104 (410)
T PRK13354 31 GKPLTLYLGFD-PTAPSLHIGHLVP---LMKLK-RFQDAGHRPVILIGGFTGKIGDPSGKSKERKLLTDE-QVQHNAKTY 104 (410)
T ss_pred CCCcEEEEccc-CCCCCcchhhHHH---HHHHH-HHHHcCCeEEEEEcccccccCCCCcccccccCCCHH-HHHHHHHHH
Confidence 45677777764 677 599999554 22244 44457999887776443 23332111112223333 334556667
Q ss_pred HHHHHH
Q psy2890 112 KKQLSS 117 (893)
Q Consensus 112 ~~~l~~ 117 (893)
+.|+.+
T Consensus 105 ~~q~~~ 110 (410)
T PRK13354 105 TEQIFK 110 (410)
T ss_pred HHHHHH
Confidence 776655
No 138
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=89.77 E-value=1.7 Score=49.08 Aligned_cols=76 Identities=24% Similarity=0.217 Sum_probs=48.4
Q ss_pred CCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy2890 35 NGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQ 114 (893)
Q Consensus 35 ~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~ 114 (893)
+++++++++.- |+|.+||||... ..-+.+++. .|++|.+..+=+ |.. .-++.++.+.. ++...+..+
T Consensus 64 ~~~~~iytG~~-PSG~lHLGh~~~---~~~~~~lQ~-~g~~~~i~IaD~-ha~------~~~~~~~e~~~-~~~~~~~~~ 130 (368)
T PRK12285 64 GKPFAVYTGFM-PSGPMHIGHKMV---FDELKWHQE-FGANVYIPIADD-EAY------AARGLSWEETR-EWAYEYILD 130 (368)
T ss_pred CCCeEEEEccC-CCCCccHHHHHH---HHHHHHHHh-cCCCEEEEecch-HHH------hcCCCCHHHHH-HHHHHHHHH
Confidence 46788888764 569999999643 334556666 788876666533 322 11245555443 344446778
Q ss_pred HHHcCCccc
Q psy2890 115 LSSLGLAID 123 (893)
Q Consensus 115 l~~lgi~~D 123 (893)
+.++|+..+
T Consensus 131 ~lA~G~Dp~ 139 (368)
T PRK12285 131 LIALGFDPD 139 (368)
T ss_pred HHHhCCCcc
Confidence 899998766
No 139
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=89.40 E-value=0.31 Score=55.89 Aligned_cols=77 Identities=21% Similarity=0.243 Sum_probs=41.6
Q ss_pred CcEEEEecCCCCCC-cCcchHHHhHHHHHHHHHHHHHcCCccccccccccccH---HHHHHHHHcCCCHHHHHHHHHHHH
Q psy2890 36 GKFYTCSMLPYPSG-KLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGM---PAENAAILNNTSPAKWTYDNVSYM 111 (893)
Q Consensus 36 ~~~~i~~~~P~~nG-~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~---pie~~a~~~g~~~~~~~~~~~~~~ 111 (893)
+++.+++++= ||| .||+||... -..+.++++ .|+++++..|= -|++ |.-........+ .+.+.++...+
T Consensus 32 ~~~~vy~G~d-PTg~slHlGhlv~---l~~l~~lQ~-~G~~~~~ligd-~ta~igDpsgk~~~r~~l~-~e~i~~n~~~i 104 (408)
T PRK05912 32 EPLRIYLGFD-PTAPSLHLGHLVP---LLKLRRFQD-AGHKPIALIGG-FTGMIGDPSGKSETRKLLT-REQVAENAETI 104 (408)
T ss_pred CCCEEEEeec-CCCCCccHHhHHH---HHHHHHHHH-CCCcEEEEEcC-ceeEcCCCCCCchhhccCC-HHHHHHHHHHH
Confidence 4566777754 678 599999774 234555554 69988777652 2222 210011111222 34444566667
Q ss_pred HHHHHHcCC
Q psy2890 112 KKQLSSLGL 120 (893)
Q Consensus 112 ~~~l~~lgi 120 (893)
++++ ..|+
T Consensus 105 ~~ql-~~~l 112 (408)
T PRK05912 105 KEQL-FKFL 112 (408)
T ss_pred HHHH-HHhc
Confidence 7666 4444
No 140
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=89.18 E-value=0.57 Score=52.17 Aligned_cols=72 Identities=17% Similarity=0.199 Sum_probs=38.6
Q ss_pred EEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Q psy2890 40 TCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLG 119 (893)
Q Consensus 40 i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 119 (893)
|+++. -|||.+||||..+.+-. ..+.+...|.++.+... |-|-+ . ...++.++ .++...+..++..+|
T Consensus 6 v~sGi-qPTG~~HLGnylga~k~--~~~lq~~~~~~~~~~IA-DlHal---t----~~~~~~~l-~~~~~~~~~~~lA~G 73 (332)
T PRK12556 6 MLTGI-KPTGYPHLGNYIGAIKP--ALQMAKNYEGKALYFIA-DYHAL---N----AVHDPEQF-RSYTREVAATWLSLG 73 (332)
T ss_pred EEEEE-CCCCcchHHHHHHHHHH--HHHHHHhcCCeEEEEEe-chhhc---c----CCCCHHHH-HHHHHHHHHHHhhee
Confidence 34443 25699999997764332 22334444655554443 33323 1 11245543 344455677778888
Q ss_pred Cccc
Q psy2890 120 LAID 123 (893)
Q Consensus 120 i~~D 123 (893)
+..+
T Consensus 74 lDP~ 77 (332)
T PRK12556 74 LDPE 77 (332)
T ss_pred eccc
Confidence 8666
No 141
>PLN02486 aminoacyl-tRNA ligase
Probab=88.45 E-value=2.8 Score=47.60 Aligned_cols=77 Identities=19% Similarity=0.210 Sum_probs=48.0
Q ss_pred CCcEEEEecCCCCCC-cCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2890 35 NGKFYTCSMLPYPSG-KLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKK 113 (893)
Q Consensus 35 ~~~~~i~~~~P~~nG-~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~ 113 (893)
++++++++|.= |+| .+||||+.. ...+..+++..|..+....+ |. +....+ +.+..+ +.++.....+
T Consensus 71 ~~~~~vYtG~~-PSg~~lHlGHlv~---~~~~~~lQ~~~~~~~~I~ia-D~-----e~~~~~-~~~~e~-i~~~~~en~~ 138 (383)
T PLN02486 71 GEKFYLYTGRG-PSSEALHLGHLIP---FMFTKYLQDAFKVPLVIQLT-DD-----EKFLWK-NLSVEE-SQRLARENAK 138 (383)
T ss_pred CCCeEEEeCCC-CCCccccHHHHHH---HHHHHHHHHhCCCeEEEEec-CH-----HHHhhc-CCCHHH-HHHHHHHHHH
Confidence 56788888864 778 599999554 44445555566766666544 43 333333 455544 3444455667
Q ss_pred HHHHcCCccc
Q psy2890 114 QLSSLGLAID 123 (893)
Q Consensus 114 ~l~~lgi~~D 123 (893)
++.++|+..+
T Consensus 139 ~iiA~G~dp~ 148 (383)
T PLN02486 139 DIIACGFDVE 148 (383)
T ss_pred HHHHhCCCCc
Confidence 7778998766
No 142
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=88.28 E-value=6.7 Score=43.72 Aligned_cols=43 Identities=21% Similarity=0.095 Sum_probs=26.3
Q ss_pred cccccCCCC-ccCccchhhhhCchhHHHHHHhc-CCCCCCcccChhhhhH
Q psy2890 634 EKMSKSKNN-GIDPQTQINTYGADSTRLFIIFS-APPEKNLEWSDIGIEG 681 (893)
Q Consensus 634 ~KMSKSkgN-~i~p~~ii~~yGaD~lRl~ll~~-~~~~~d~~~~~~~i~~ 681 (893)
.|||||.+| .|...| .++.+|=-+..+ .+.+..+.++.....+
T Consensus 191 ~KMSKS~~~s~I~L~D-----~~e~I~~KI~~a~td~~~~~~~~~~~~~g 235 (328)
T TIGR00233 191 KKMSKSDPNSAIFLTD-----TPKQIKKKIRKAATDGGRVTLFEHREKGG 235 (328)
T ss_pred CcCCCCCCCCeEeecC-----CHHHHHHHHHhcCCCCCCCcccCcCCCCC
Confidence 699999997 776655 566666666653 3334455555444333
No 143
>PLN02959 aminoacyl-tRNA ligase
Probab=87.29 E-value=0.91 Score=58.59 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEec--chHHHHHHHHHhhC
Q psy2890 136 YKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKIT--NYAEELLEYVKKKL 213 (893)
Q Consensus 136 ~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~--~~~~~l~~~~~~~~ 213 (893)
.++-..+...|.++|++..... | ..+.|.|||.+++.+-.+|||++++ .+++..++.+ +.+
T Consensus 494 ~eAr~~Ii~~L~~~G~l~~~~e-----p-----------~~pv~~R~g~~~~v~l~~QWFi~~~~~~~k~~a~~~l-~~v 556 (1084)
T PLN02959 494 QEAKPLIKKKLIEAGQAILYSE-----P-----------EKKVMSRSGDECVVALTDQWYLTYGEEEWKKKAEKCL-SKM 556 (1084)
T ss_pred HHHHHHHHHHHHhCCCceeeeE-----c-----------CCCeEECCCCEEEEeecCCeeEECCchHHHHHHHHHH-ccc
Confidence 3455667888999997653222 2 1256899999999999999999998 6889988888 666
Q ss_pred CCChHHHHHHHHhhcc
Q psy2890 214 PYWPKKVRLMQVNWIG 229 (893)
Q Consensus 214 ~~~p~~~~~~~~~wi~ 229 (893)
.-.|+..++...+||.
T Consensus 557 ~~~P~~~~~~~~~wl~ 572 (1084)
T PLN02959 557 NLYSDETRHGFEHTLG 572 (1084)
T ss_pred EEECHHHHHHHHHHHh
Confidence 5469999999999985
No 144
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=87.22 E-value=0.88 Score=44.52 Aligned_cols=106 Identities=16% Similarity=0.112 Sum_probs=56.3
Q ss_pred HHHHHHHcCCcccccc-ccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHH
Q psy2890 65 MYRYMRMNGYNVLMPM-GWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIF 143 (893)
Q Consensus 65 ~~R~~r~~G~~V~~~~-G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f 143 (893)
+||++|+.||.+.+.. ..| -.+...|.++|.=. ++ +-...+++. ++|+..= .-.+....+...++.
T Consensus 18 LARwLRllGydt~~~~~~~d---~~i~~i~~~e~rIl--lT-RDr~L~~r~--k~g~~~i-----~i~~~s~~~Ql~e~~ 84 (165)
T COG1656 18 LARWLRLLGYDTVYSSNESD---DEIILIAKKEGRIL--LT-RDRELYKRA--KLGIKAI-----LIRSDSIEEQLAEFL 84 (165)
T ss_pred HHHHHHHcCCceeeeccCCc---HHHHHHHhcCCeEE--Ee-ccHHHHHHh--hccCceE-----EEeCCCHHHHHHHHH
Confidence 7999999999999997 333 23445555544210 00 001122222 4555332 222223345555665
Q ss_pred HHHHhcCcceeeceeeeecCCCCccccc---chhcc-------------CcccCCCccc
Q psy2890 144 LKMFKRGIIYKKTGIVNWDPIEKTVLAN---EQVIN-------------GRGWRSDAII 186 (893)
Q Consensus 144 ~~L~~~Gliy~~~~~v~~~~~~~t~l~~---~ev~~-------------g~c~~~~~~v 186 (893)
.+|-.++-... ...=||.|++.|.. +|+++ -+|+.||..-
T Consensus 85 ~~~~l~~~~~~---e~~RCp~CN~~L~~vs~eev~~~Vp~~~~~~~~~f~~C~~CgkiY 140 (165)
T COG1656 85 ARLGLKPRLFP---EFSRCPECNGELEKVSREEVKEKVPEKVYRNYEEFYRCPKCGKIY 140 (165)
T ss_pred HHhccchhccc---ccccCcccCCEeccCcHHHHhhccchhhhhcccceeECCCCcccc
Confidence 55555542222 24559999987654 44331 2388888653
No 145
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=86.91 E-value=2.8 Score=44.07 Aligned_cols=33 Identities=21% Similarity=0.206 Sum_probs=25.6
Q ss_pred cccccCCCCccCccchhh-hhCchhHHHHHHhcCC
Q psy2890 634 EKMSKSKNNGIDPQTQIN-TYGADSTRLFIIFSAP 667 (893)
Q Consensus 634 ~KMSKSkgN~i~p~~ii~-~yGaD~lRl~ll~~~~ 667 (893)
+|||||+|+ ++..++.+ .|-+++++-|+++.+-
T Consensus 152 ~KLSKr~~~-~~i~~~r~~G~~p~ai~~~l~~lG~ 185 (230)
T cd00418 152 TKLSKRKLN-TTLRALRRRGYLPEALRNYLALIGW 185 (230)
T ss_pred CCccCcCCC-cCHHHHHHCCCcHHHHHHHHHHcCC
Confidence 799999998 45555544 4889999999987663
No 146
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=86.67 E-value=0.93 Score=51.72 Aligned_cols=72 Identities=14% Similarity=0.155 Sum_probs=39.8
Q ss_pred EEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Q psy2890 40 TCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLG 119 (893)
Q Consensus 40 i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 119 (893)
|+++. -|||.|||||..+.+-. ..+.+...|+++.+... |-|-+- ...+|.++... ...+...+...|
T Consensus 5 vlSGi-qPTG~lHLGNylGaik~--~v~lq~q~~~~~~~~IA-DlHAlT-------~~~dp~~lr~~-~~e~aa~~LA~G 72 (431)
T PRK12284 5 VLTGI-TTTGTPHLGNYAGAIRP--AIAASRQPGVESFYFLA-DYHALI-------KCDDPARIQRS-TLEIAATWLAAG 72 (431)
T ss_pred EEEEe-cCCCcchHHHHHHHHHH--HHHHHHhCCCcEEEEee-chhhcc-------CCCCHHHHHHH-HHHHHHHHHHhC
Confidence 34443 37799999997665432 23344445888655443 333331 12355544433 334667777778
Q ss_pred Cccc
Q psy2890 120 LAID 123 (893)
Q Consensus 120 i~~D 123 (893)
+..+
T Consensus 73 lDPe 76 (431)
T PRK12284 73 LDPE 76 (431)
T ss_pred CCcc
Confidence 7555
No 147
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=86.48 E-value=0.79 Score=52.01 Aligned_cols=26 Identities=35% Similarity=0.238 Sum_probs=18.9
Q ss_pred cccccCCCC-ccCccchhhhhCchhHHHHHHh
Q psy2890 634 EKMSKSKNN-GIDPQTQINTYGADSTRLFIIF 664 (893)
Q Consensus 634 ~KMSKSkgN-~i~p~~ii~~yGaD~lRl~ll~ 664 (893)
.|||||.+| .|...| .++.+|=-++.
T Consensus 256 ~KMSKS~~ns~I~L~D-----spe~I~kKI~k 282 (383)
T PTZ00126 256 EKMSKSDPNSAIFMED-----SEEDVNRKIKK 282 (383)
T ss_pred CCCCcCCCCCeecCCC-----CHHHHHHHHHh
Confidence 699999987 577765 56666666654
No 148
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=86.47 E-value=0.81 Score=51.09 Aligned_cols=64 Identities=19% Similarity=0.350 Sum_probs=36.5
Q ss_pred CCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCccc
Q psy2890 47 PSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGLAID 123 (893)
Q Consensus 47 ~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~D 123 (893)
|||.+||||..+.+-. +.+++. +++|.+..+ |-|-+- ...++.+ ..++...+..++.++|+..+
T Consensus 10 PTG~lHLG~~~g~~~~--~~~lQ~--~~~~~~~Ia-D~ha~t-------~~~~~~~-i~~~~~~~~~~~lA~GlDp~ 73 (333)
T PRK00927 10 PTGKLHLGNYLGAIKN--WVELQD--EYECFFCIA-DLHALT-------VPQDPEE-LRENTRELAADYLACGIDPE 73 (333)
T ss_pred CCccchHHhHHHHHHH--HHHHHh--cCCeEEEEe-cHHHHh-------CCCCHHH-HHHHHHHHHHHHHeEccChh
Confidence 6799999998876432 444554 367766553 322221 1123433 33445556777777777544
No 149
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=86.37 E-value=1.3 Score=48.13 Aligned_cols=21 Identities=19% Similarity=0.129 Sum_probs=14.5
Q ss_pred CCceeeecchhhHHHHHHHHHH
Q psy2890 536 MPVDQYIGGIEHAILHLLYARF 557 (893)
Q Consensus 536 ~PvD~~igG~D~~i~Hl~y~rf 557 (893)
+.+|+..+|.|| ..|+-.+|=
T Consensus 152 ~~~~~vp~G~DQ-~~~i~l~rd 172 (273)
T cd00395 152 EGCDIQPGGSDQ-WGNITLGRE 172 (273)
T ss_pred cCCcEEEecHHH-HHHHHHHHH
Confidence 346999999999 446544443
No 150
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=86.32 E-value=1.7 Score=47.39 Aligned_cols=67 Identities=22% Similarity=0.317 Sum_probs=41.7
Q ss_pred CCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCccc
Q psy2890 46 YPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGLAID 123 (893)
Q Consensus 46 ~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~D 123 (893)
-|||.|||||..+.+.. +.++++ .|+++.+..+ |-|.+- ....++. -..++...+..++.++|+..+
T Consensus 7 ~PTG~lHLG~~~~al~~--~~~lQ~-ag~~~~~~Ia-D~ha~t------~~~~~~~-~~~~~~~~~~~~~lA~G~dp~ 73 (280)
T cd00806 7 QPSGSLHLGHYLGAFRF--WVWLQE-AGYELFFFIA-DLHALT------VKQLDPE-ELRQNTRENAKDYLACGLDPE 73 (280)
T ss_pred CCCchhhHHHHHHHHHH--HHHHHh-CCCCEEEEec-chHHHh------CCCCCHH-HHHHHHHHHHHHHHHcCCCcc
Confidence 37799999998884433 333443 3888776655 444431 1123444 345566778889999998544
No 151
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=81.65 E-value=1.9 Score=46.98 Aligned_cols=26 Identities=31% Similarity=0.241 Sum_probs=18.9
Q ss_pred cccccCCC-CccCccchhhhhCchhHHHHHHh
Q psy2890 634 EKMSKSKN-NGIDPQTQINTYGADSTRLFIIF 664 (893)
Q Consensus 634 ~KMSKSkg-N~i~p~~ii~~yGaD~lRl~ll~ 664 (893)
.|||||.+ |.|...| .++.+|=-+..
T Consensus 190 ~KMSKS~~~~~I~L~d-----~~~~i~~KI~~ 216 (280)
T cd00806 190 KKMSKSDPNNAIFLTD-----SPKEIKKKIMK 216 (280)
T ss_pred CcccCCCCCCeEEeeC-----CHHHHHHHHHh
Confidence 59999999 9987766 45555555554
No 152
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=80.22 E-value=2.5 Score=47.85 Aligned_cols=64 Identities=20% Similarity=0.354 Sum_probs=36.3
Q ss_pred CCCcCcchHHHhHHHHHHHHHHHH-HcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCccc
Q psy2890 47 PSGKLHMGHVRNYTINDVMYRYMR-MNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGLAID 123 (893)
Q Consensus 47 ~nG~lHiGH~~~~~~~Di~~R~~r-~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~D 123 (893)
|||.+||||..+.+ + .|.. ..|+++.+.. .|-|=+- -...++.++ .++...+...+..+|+..+
T Consensus 11 PSG~~HLGnylG~i-k----~wv~lq~~~~~~~~I-ADlHAlt------~~~~d~~~i-r~~~~~~~a~~lA~GlDP~ 75 (398)
T PRK12283 11 PTGRLHLGHYHGVL-K----NWVKLQHEYECFFFV-ADWHALT------THYETPEVI-EKNVWDMVIDWLAAGVDPA 75 (398)
T ss_pred CCCcchHHHHHHHH-H----HHHHHhcCCcEEEEe-ecHHHHh------CCCCCHHHH-HHHHHHHHHHHHHcCCCcc
Confidence 67999999988733 2 3333 3477654333 3433321 112244443 3444557788888888766
No 153
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=79.56 E-value=23 Score=43.25 Aligned_cols=26 Identities=27% Similarity=0.169 Sum_probs=18.0
Q ss_pred cccccCC-CCccCccchhhhhCchhHHHHHHh
Q psy2890 634 EKMSKSK-NNGIDPQTQINTYGADSTRLFIIF 664 (893)
Q Consensus 634 ~KMSKSk-gN~i~p~~ii~~yGaD~lRl~ll~ 664 (893)
.|||||. +|.|...| .++.+|=-+..
T Consensus 221 ~KMSKS~p~naI~L~D-----spe~I~kKI~k 247 (682)
T PTZ00348 221 AKMSKSDPDSAIFMED-----TEEDVARKIRQ 247 (682)
T ss_pred CcCCCCCCCCeecccC-----CHHHHHHHHHh
Confidence 6999999 68887766 44555544443
No 154
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=79.39 E-value=3.3 Score=47.61 Aligned_cols=29 Identities=21% Similarity=0.101 Sum_probs=20.4
Q ss_pred cccccCCCCccCccchhhhhCchhHHHHHHh
Q psy2890 634 EKMSKSKNNGIDPQTQINTYGADSTRLFIIF 664 (893)
Q Consensus 634 ~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~ 664 (893)
.|||||.||.|..++= +..++.++=+++.
T Consensus 229 ~KMsKS~~naI~L~d~--~tsp~~i~qki~~ 257 (410)
T PRK13354 229 TKMGKSAGGAIWLDPE--KTSPYEFYQFWMN 257 (410)
T ss_pred CccCCCCCCceeccCC--CCCHHHHHHHHHc
Confidence 7999999999877652 3445556555653
No 155
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=78.15 E-value=2.4 Score=47.88 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=16.0
Q ss_pred ceeeecchhhHHHHHHHHHHHHH
Q psy2890 538 VDQYIGGIEHAILHLLYARFWTK 560 (893)
Q Consensus 538 vD~~igG~D~~i~Hl~y~rf~~~ 560 (893)
.++..+|.|| ..|+-.+|=+..
T Consensus 204 ~~lvPvG~DQ-~~h~~ltRdiA~ 225 (368)
T PRK12285 204 PTLVPVGIDQ-DPHIRLTRDIAE 225 (368)
T ss_pred ceEEEeccch-HHHHHHHHHHHH
Confidence 5799999999 557666665544
No 156
>PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This DALR domain is found in cysteinyl-tRNA-synthetases []. ; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1LI5_B 1LI7_B 1U0B_B 3TQO_A.
Probab=77.90 E-value=5.9 Score=32.52 Aligned_cols=53 Identities=9% Similarity=0.157 Sum_probs=34.1
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHHHHHHhhcccccCCCCCcccHHHHHHHHHHHHHHhcc
Q psy2890 735 QINRDI-KRIQYNTVVSGCMKIFNILERINSETKFDNNKNTNNDILLYEGMSIFLRVLNP 793 (893)
Q Consensus 735 ~v~~~~-e~~~f~~ai~~l~~fvn~l~~~~k~~~~~~~~~~~~~~~l~~~l~~ll~LL~P 793 (893)
++.++| ++|+++.|++.|+++++.+|+.... ........+...++.+..+|.-
T Consensus 1 ~F~~AmdDDfNT~~Ala~lf~l~~~~N~~~~~------~~~~~~~~~~~~l~~~~~vLGl 54 (63)
T PF09190_consen 1 EFIEAMDDDFNTPEALAALFELVKEINRALES------NDKEDLEALAAALRKLLDVLGL 54 (63)
T ss_dssp HHHHHHCBTS-HHHHHHHHHHHHHHHHHHHHC------C-HHHHHHHHHHHHHHHHCCT-
T ss_pred ChHHHHhHhcCcHHHHHHHHHHHHHHHHhccc------CCHHHHHHHHHHHHHHHhcCcC
Confidence 467889 8899999999999999999882211 1122334445566666666554
No 157
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=77.63 E-value=7.4 Score=43.44 Aligned_cols=75 Identities=23% Similarity=0.315 Sum_probs=45.2
Q ss_pred CcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy2890 36 GKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQL 115 (893)
Q Consensus 36 ~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l 115 (893)
++++++++. -|||.+||||+.. .--+.++++ .|++|.+..+ |-|.+-. ...++. -..++...+..++
T Consensus 29 ~~~~v~~G~-~PTG~lHLG~~~~---~~~~~~lq~-~g~~~~i~Ia-D~ha~~~------~~~~~~-~i~~~~~~~~~~~ 95 (329)
T PRK08560 29 EEPKAYIGF-EPSGKIHLGHLLT---MNKLADLQK-AGFKVTVLLA-DWHAYLN------DKGDLE-EIRKVAEYNKKVF 95 (329)
T ss_pred CCCEEEEcc-CCCCcchhhhhHH---HHHHHHHHH-CCCeEEEEEc-cchhhcC------CCCCHH-HHHHHHHHHHHHH
Confidence 455666665 3679999999553 223666666 4888765554 3333311 012343 3445556788899
Q ss_pred HHcCCccc
Q psy2890 116 SSLGLAID 123 (893)
Q Consensus 116 ~~lgi~~D 123 (893)
.++|+..+
T Consensus 96 ~A~G~dp~ 103 (329)
T PRK08560 96 EALGLDPD 103 (329)
T ss_pred HHcCCChh
Confidence 99998665
No 158
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=76.15 E-value=12 Score=41.00 Aligned_cols=76 Identities=18% Similarity=0.201 Sum_probs=49.2
Q ss_pred CcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCC-ccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy2890 36 GKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGY-NVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQ 114 (893)
Q Consensus 36 ~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~-~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~ 114 (893)
.++.|++|. -|||.|||||..+.+. .+++...++ ++.+. =.|.|.+-+ .+..+.+-..+++..+..+
T Consensus 4 ~~~~vlSG~-~PSG~lHLGny~ga~~----~~v~~q~~~~~~f~~-IaDlha~t~------~~~~~~~~l~~~~~e~~a~ 71 (314)
T COG0180 4 KKFRVLSGI-QPSGKLHLGNYLGAIR----NWVLLQEEYYECFFF-IADLHAITV------RQDPTEEDLRQATREVAAD 71 (314)
T ss_pred CCceEEecC-CCCCCcchhHhHHHHH----HHHHHhcccCceEEE-EecHHHhhc------CCCChHHHHHHHHHHHHHH
Confidence 356667664 3779999999888643 345555564 55443 345554422 3334445566667778888
Q ss_pred HHHcCCccc
Q psy2890 115 LSSLGLAID 123 (893)
Q Consensus 115 l~~lgi~~D 123 (893)
+-++|+..+
T Consensus 72 ~LA~GiDP~ 80 (314)
T COG0180 72 YLAVGLDPE 80 (314)
T ss_pred HHHhccCcc
Confidence 999999888
No 159
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=76.13 E-value=8.3 Score=44.21 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=15.4
Q ss_pred ceeeecchhhHHHHHHHHHHHHH
Q psy2890 538 VDQYIGGIEHAILHLLYARFWTK 560 (893)
Q Consensus 538 vD~~igG~D~~i~Hl~y~rf~~~ 560 (893)
+|+...|.|| ..|+-.+|=+..
T Consensus 149 ad~VPVG~DQ-~qHlELaRdIA~ 170 (431)
T PRK12284 149 AHKVPVGRDQ-IQHIEMARDIAQ 170 (431)
T ss_pred CCEEEEcchh-HHHHHHHHHHHH
Confidence 5788888998 567766665543
No 160
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=76.13 E-value=5 Score=47.05 Aligned_cols=31 Identities=13% Similarity=0.154 Sum_probs=24.4
Q ss_pred cccccCCCCccCccchhhh-hCchhHHHHHHhc
Q psy2890 634 EKMSKSKNNGIDPQTQINT-YGADSTRLFIIFS 665 (893)
Q Consensus 634 ~KMSKSkgN~i~p~~ii~~-yGaD~lRl~ll~~ 665 (893)
.||||.+| .++.+++++. |-+.+++-|++..
T Consensus 240 ~kLSKR~g-~~~l~~l~~~g~~p~a~~~~~~~l 271 (470)
T TIGR00464 240 KKLSKRDG-ATSIMQFKEQGYLPEALINYLALL 271 (470)
T ss_pred ccccccCC-CccHHHHHHCCCCHHHHHHHHHHc
Confidence 79999999 8888888886 4577777777654
No 161
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=75.78 E-value=5 Score=43.93 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=16.1
Q ss_pred CceeeecchhhHHHHHHHHHHHHH
Q psy2890 537 PVDQYIGGIEHAILHLLYARFWTK 560 (893)
Q Consensus 537 PvD~~igG~D~~i~Hl~y~rf~~~ 560 (893)
-+|+.++|.|| ..|+-.+|-+..
T Consensus 149 ~~~~~~~G~DQ-~~~~~l~rd~a~ 171 (292)
T PF00579_consen 149 KADLVPGGIDQ-RGHIELARDLAR 171 (292)
T ss_dssp THSEEEEEGGG-HHHHHHHHHHHH
T ss_pred ccccccccchH-HHHHHHHHHHHh
Confidence 45899999999 456555665443
No 162
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=75.28 E-value=3.3 Score=47.08 Aligned_cols=40 Identities=23% Similarity=0.406 Sum_probs=26.8
Q ss_pred cEEEEecCCCCCC-cCcchHHHhHHHHHHHHHHHHHcCCccccccc
Q psy2890 37 KFYTCSMLPYPSG-KLHMGHVRNYTINDVMYRYMRMNGYNVLMPMG 81 (893)
Q Consensus 37 ~~~i~~~~P~~nG-~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G 81 (893)
++.++.++= ||| .||+||+.. .-.+.++++ .|++|.+..|
T Consensus 30 ~~~vy~G~d-PTg~~lHlGh~v~---l~~l~~lq~-~G~~~~ilig 70 (377)
T TIGR00234 30 KIKLYVGFD-PTAPSLHLGHLVP---LLKLRDFQQ-AGHEVIVLLG 70 (377)
T ss_pred CCEEEEeeC-CCCCCccHHHHHH---HHHHHHHHH-CCCcEEEEEe
Confidence 456666653 678 899999764 223455555 6888877765
No 163
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=75.23 E-value=2.4 Score=45.85 Aligned_cols=28 Identities=29% Similarity=0.106 Sum_probs=18.3
Q ss_pred cccccCCCCccCccchhhhhCchhHHHHHHh
Q psy2890 634 EKMSKSKNNGIDPQTQINTYGADSTRLFIIF 664 (893)
Q Consensus 634 ~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~ 664 (893)
+|||||.+|.++ ..+. -.++.++=.+..
T Consensus 194 ~KMSKS~~~~~~-i~l~--dsp~~i~~Ki~~ 221 (269)
T cd00805 194 GKMSKSEGNAIW-DPVL--DSPYDVYQKIRN 221 (269)
T ss_pred CcccCCCCCccc-ccCC--CCHHHHHHHHHc
Confidence 799999999984 2222 345555555554
No 164
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=74.76 E-value=6.7 Score=43.70 Aligned_cols=74 Identities=20% Similarity=0.392 Sum_probs=43.6
Q ss_pred EEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q psy2890 38 FYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSS 117 (893)
Q Consensus 38 ~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 117 (893)
+.++++. -|||.+||||..+.+.. ++....|++|.+..+ |-|.+-. ..+..+.. ..++...+..++.+
T Consensus 3 ~~v~~G~-~PTG~~HlG~~l~~~~~----~~~~q~~~~~~i~Ia-D~ha~t~-----~~~~~~~~-~~~~~~~~~~~~lA 70 (328)
T TIGR00233 3 FRVLTGI-QPSGKMHLGHYLGAIQT----KWLQQFGVELFICIA-DLHAITV-----KDNTDPDA-LRKAREELAADILA 70 (328)
T ss_pred CEEEEee-CCCcHhHHHHHHHHHHH----HHHHhCCCCEEEEee-cchhhcC-----CCCCCHHH-HHHHHHHHHHHHHH
Confidence 4556554 36799999997775433 333457888766655 3333210 11113332 34445666778889
Q ss_pred cCCccc
Q psy2890 118 LGLAID 123 (893)
Q Consensus 118 lgi~~D 123 (893)
.|+..+
T Consensus 71 ~GlDp~ 76 (328)
T TIGR00233 71 VGLDPK 76 (328)
T ss_pred hCcChh
Confidence 999887
No 165
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=74.42 E-value=2.1 Score=42.39 Aligned_cols=41 Identities=12% Similarity=0.024 Sum_probs=33.1
Q ss_pred HhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeec
Q psy2890 147 FKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIP 192 (893)
Q Consensus 147 ~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~ 192 (893)
.+++-.+.++.++|||-.|+-.|.. .+|..||..++...++
T Consensus 2 ~kk~~~~~gk~~iyWCe~cNlPl~~-----~~c~~cg~~~~~l~LT 42 (202)
T COG5270 2 RKKMPVVLGKFPIYWCEKCNLPLLG-----RRCSVCGSKVEELRLT 42 (202)
T ss_pred CcccceeecccceeehhhCCCcccc-----ccccccCCcceEEEeC
Confidence 4567788899999999999988765 6899999888766544
No 166
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=74.07 E-value=7.2 Score=44.86 Aligned_cols=29 Identities=17% Similarity=0.052 Sum_probs=22.5
Q ss_pred cccccCCCCccCccchhhhhCchhHHHHHHh
Q psy2890 634 EKMSKSKNNGIDPQTQINTYGADSTRLFIIF 664 (893)
Q Consensus 634 ~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~ 664 (893)
+|||||.||.|..++ ++..++.++=+++.
T Consensus 231 ~KMsKS~~naI~L~d--~~tsp~~i~qki~~ 259 (408)
T PRK05912 231 KKMGKSEGNAVWLDE--EKTSPYEMYQKWMN 259 (408)
T ss_pred CcccCCCCCceeCCC--CCCCHHHHHHHHhc
Confidence 799999999998876 34457777777775
No 167
>KOG0434|consensus
Probab=73.74 E-value=1.8 Score=51.07 Aligned_cols=86 Identities=22% Similarity=0.423 Sum_probs=62.3
Q ss_pred HHHHHHHhcCcceeeceeeeecCCCCccccc-------------------------------chhc--cCcccCCCcccE
Q psy2890 141 WIFLKMFKRGIIYKKTGIVNWDPIEKTVLAN-------------------------------EQVI--NGRGWRSDAIIE 187 (893)
Q Consensus 141 ~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~-------------------------------~ev~--~g~c~~~~~~v~ 187 (893)
.=+....++|+|-++..++ ||.++..+=- .++. .+-|||++.++.
T Consensus 332 ~Dy~~c~~~giI~~d~~~~--cpVDe~G~~Tsev~dfaG~YVKDaDK~Ii~~lk~~g~lv~~~~i~HsYPFCWRSDTPLi 409 (1070)
T KOG0434|consen 332 EDYRACVANGIIRKDSLPP--CPVDESGLFTSEVTDFAGQYVKDADKLIIRSLKASGRLVKASQITHSYPFCWRSDTPLI 409 (1070)
T ss_pred hhHHHHHHcCcccCCCCCC--CccccCCccccccccccceeeccchHHHHHHHHhcCceeeeeeeeeccCceecCCChHH
Confidence 3456678899998876655 8887764311 2222 256999999999
Q ss_pred EEeeceeeEEecchHHHHHHHHHhhCCCC-hHHH-HHHHHhhccc
Q psy2890 188 KKKIPMYYAKITNYAEELLEYVKKKLPYW-PKKV-RLMQVNWIGK 230 (893)
Q Consensus 188 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~-p~~~-~~~~~~wi~~ 230 (893)
||-+++||.+....-++|++-. ....| |+.+ .+..-|||..
T Consensus 410 YraVPsWFVrVk~~v~~ll~nn--~~t~WVP~~ikeKRF~NWL~n 452 (1070)
T KOG0434|consen 410 YRAVPSWFVRVKNIVDQLLRNN--MKTHWVPQNIKEKRFANWLKN 452 (1070)
T ss_pred HhhccHhhhhHHHHHHHHHhcc--cccccCChhhhHHHHHHHHhh
Confidence 9999999999999999887533 12237 8887 4667799963
No 168
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=72.57 E-value=3.2 Score=47.21 Aligned_cols=16 Identities=25% Similarity=0.160 Sum_probs=12.1
Q ss_pred CceeeecchhhHHHHH
Q psy2890 537 PVDQYIGGIEHAILHL 552 (893)
Q Consensus 537 PvD~~igG~D~~i~Hl 552 (893)
-+|+-+||.||=.+|+
T Consensus 180 ~~dlq~GG~DQ~~ni~ 195 (401)
T COG0162 180 NKDLQLGGSDQWGNIL 195 (401)
T ss_pred ccchhcCChHHHHHHH
Confidence 4689999999954443
No 169
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=72.45 E-value=3.6 Score=40.73 Aligned_cols=99 Identities=11% Similarity=0.027 Sum_probs=61.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcc---------cccCccccCCh-hhHHHHHHHHHHHH---hcCcce
Q psy2890 87 MPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGLAI---------DWSREIITCSP-KYYKWNQWIFLKMF---KRGIIY 153 (893)
Q Consensus 87 ~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~---------Dw~~~~~T~~~-~~~~~v~~~f~~L~---~~Gliy 153 (893)
+..+..|...|++..+. ..+...|...|+-- -|-.++++.++ .-...+.+-+.++. ++-+-+
T Consensus 29 ~tdEeLa~~Lgi~~~~V-----Rk~L~~L~e~~Lv~~~r~r~~~~gw~~Y~w~i~~~~i~d~Ik~~~~~~~~~lk~~l~~ 103 (158)
T TIGR00373 29 FTDEEISLELGIKLNEV-----RKALYALYDAGLADYKRRKDDETGWYEYTWRINYEKALDVLKRKLEETAKKLREKLEF 103 (158)
T ss_pred CCHHHHHHHHCCCHHHH-----HHHHHHHHHCCCceeeeeeecCCCcEEEEEEeCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555566677776554 34455555555531 24334444443 23334444333333 355667
Q ss_pred eeceeeeecCCCCcccccchhc--cCcccCCCcccEEEe
Q psy2890 154 KKTGIVNWDPIEKTVLANEQVI--NGRGWRSDAIIEKKK 190 (893)
Q Consensus 154 ~~~~~v~~~~~~~t~l~~~ev~--~g~c~~~~~~v~~~~ 190 (893)
......|.||.|+.-.+-.|.. +..||.||.+.++.+
T Consensus 104 e~~~~~Y~Cp~c~~r~tf~eA~~~~F~Cp~Cg~~L~~~d 142 (158)
T TIGR00373 104 ETNNMFFICPNMCVRFTFNEAMELNFTCPRCGAMLDYLD 142 (158)
T ss_pred ccCCCeEECCCCCcEeeHHHHHHcCCcCCCCCCEeeecc
Confidence 7788899999999888887775 458999999988755
No 170
>PLN02486 aminoacyl-tRNA ligase
Probab=69.52 E-value=48 Score=37.80 Aligned_cols=26 Identities=27% Similarity=0.100 Sum_probs=19.6
Q ss_pred cccccCCCC-ccCccchhhhhCchhHHHHHHh
Q psy2890 634 EKMSKSKNN-GIDPQTQINTYGADSTRLFIIF 664 (893)
Q Consensus 634 ~KMSKSkgN-~i~p~~ii~~yGaD~lRl~ll~ 664 (893)
.|||||.+| .|...| .++.++=.+..
T Consensus 264 ~KMSkS~~nsaI~L~D-----~p~~i~~KI~k 290 (383)
T PLN02486 264 GKMSASDPNSAIYVTD-----TPKEIKNKINK 290 (383)
T ss_pred CcCcCcCCCCeeeccC-----CHHHHHHHHhc
Confidence 599999988 687776 56666666654
No 171
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=68.98 E-value=9.3 Score=40.47 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=24.5
Q ss_pred cccccCCCCccCccchhh-hhCchhHHHHHHhcC
Q psy2890 634 EKMSKSKNNGIDPQTQIN-TYGADSTRLFIIFSA 666 (893)
Q Consensus 634 ~KMSKSkgN~i~p~~ii~-~yGaD~lRl~ll~~~ 666 (893)
.||||+.|+ .+...+.+ .|-+.+++-|++..+
T Consensus 161 ~KLSKR~~~-~~l~~lr~~G~~p~ai~~~l~~lG 193 (239)
T cd00808 161 KKLSKRKGD-TSISDYREEGYLPEALLNYLALLG 193 (239)
T ss_pred CcccCCCCC-ccHHHHHHCCCCHHHHHHHHHHcC
Confidence 799999999 45555443 477899999998755
No 172
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=68.40 E-value=3.9 Score=39.90 Aligned_cols=67 Identities=10% Similarity=-0.023 Sum_probs=45.1
Q ss_pred ccCccccCCh-hhHHHHHHHHHHH---HhcCcceeeceeeeecCCCCcccccchhc--c-----CcccCCCcccEEEe
Q psy2890 124 WSREIITCSP-KYYKWNQWIFLKM---FKRGIIYKKTGIVNWDPIEKTVLANEQVI--N-----GRGWRSDAIIEKKK 190 (893)
Q Consensus 124 w~~~~~T~~~-~~~~~v~~~f~~L---~~~Gliy~~~~~v~~~~~~~t~l~~~ev~--~-----g~c~~~~~~v~~~~ 190 (893)
|...|+..+. .....+.+-..++ +++-+-+......+.||.|+.-.+..+.. . -.||.||.+++..+
T Consensus 60 ~~~~yw~i~y~~~~~vik~r~~~~~~~L~~~l~~e~~~~~Y~Cp~C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~~d 137 (147)
T smart00531 60 WYRYYWYINYDTLLDVVKYKLDKMRKRLEDKLEDETNNAYYKCPNCQSKYTFLEANQLLDMDGTFTCPRCGEELEEDD 137 (147)
T ss_pred EEEEEEEecHHHHHHHHHHHHHHHHHHHHHHHhcccCCcEEECcCCCCEeeHHHHHHhcCCCCcEECCCCCCEEEEcC
Confidence 5555555553 3334444444444 35567788888999999999776665553 2 47999999998654
No 173
>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA.
Probab=68.19 E-value=42 Score=32.88 Aligned_cols=64 Identities=9% Similarity=0.099 Sum_probs=46.8
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhccccccccccccCCccccCCChhHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q psy2890 677 IGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDI-KRIQYNTVVSGCMKI 755 (893)
Q Consensus 677 ~~i~~~~~~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~-e~~~f~~ai~~l~~f 755 (893)
+.++.+.+-+.|+++++..+.. . . . . ...+..+..++.++| ++++++.|++.|+++
T Consensus 2 e~L~~A~~~l~rl~~~~~~l~~-------~-------~--~-~------~~~~~~~~~~f~~Al~DDlNt~~Ala~l~~l 58 (156)
T cd07963 2 DNLEDARAALERLYTALRGVPP-------T-------T--V-D------IDWGEPFAERFIAAMDDDFNTPEALAVLFEL 58 (156)
T ss_pred hHHHHHHHHHHHHHHHHHhhHh-------c-------c--c-c------hhhHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 5678889999999988766421 0 0 0 0 012334567899999 889999999999999
Q ss_pred HHHHHHhh
Q psy2890 756 FNILERIN 763 (893)
Q Consensus 756 vn~l~~~~ 763 (893)
+..++.+.
T Consensus 59 ~k~~n~~~ 66 (156)
T cd07963 59 AREINRLK 66 (156)
T ss_pred HHHHHHHh
Confidence 99888765
No 174
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=68.16 E-value=20 Score=33.07 Aligned_cols=54 Identities=2% Similarity=0.148 Sum_probs=44.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccccCCC
Q psy2890 718 FNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIFNILERINSETKFDNN 771 (893)
Q Consensus 718 ~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fvn~l~~~~k~~~~~~~ 771 (893)
.++.++.++..+..+...+..+++.++++.++..++++...+++|+.+....++
T Consensus 31 ~~~~e~~L~~~l~~~~~~l~~a~~~~~p~~l~~yL~~La~~f~~fy~~~~I~~~ 84 (119)
T PF05746_consen 31 EEEEERELLKQLARFPDVLEKAAKDLEPHKLCDYLYELAQAFNSFYDNVRILDE 84 (119)
T ss_dssp -SHHHHHHHHHHCTHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHS-STTS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 356788899999999999999999999999999999999999999866544433
No 175
>cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. The family also includes a domain of MshC, the rate-determining enzyme in the mycothiol biosynthetic pathway, which is specific to actinomycetes. The anticodon-binding site of CysRS lies C-terminal to this model's footprint and is not shared by MshC.
Probab=67.50 E-value=24 Score=30.65 Aligned_cols=57 Identities=7% Similarity=0.003 Sum_probs=42.9
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhccccccccccccCCccccCCChhHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q psy2890 677 IGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDI-KRIQYNTVVSGCMKI 755 (893)
Q Consensus 677 ~~i~~~~~~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~-e~~~f~~ai~~l~~f 755 (893)
+.++.+.+-++|+++++..+.. . ....+.+++.++| ++++++.|++.++++
T Consensus 2 e~L~~A~~~l~rl~~~l~~~~~---------------~-------------~~~~~~~~F~~AL~DDLNTp~Ala~L~~l 53 (81)
T cd07955 2 EVLADAEARLARWRSAVALPDG---------------P-------------DAEALVARLREALADDLDTPKALAALDAW 53 (81)
T ss_pred hHHHHHHHHHHHHHHHHHhccc---------------c-------------cHHHHHHHHHHHHHhhCChHHHHHHHHHH
Confidence 5678888889998887654310 0 1234568899999 889999999999999
Q ss_pred HHHH-HH
Q psy2890 756 FNIL-ER 761 (893)
Q Consensus 756 vn~l-~~ 761 (893)
+..+ +.
T Consensus 54 ~k~i~~~ 60 (81)
T cd07955 54 AREALSR 60 (81)
T ss_pred HHHHHhc
Confidence 9876 53
No 176
>KOG1195|consensus
Probab=65.98 E-value=40 Score=39.05 Aligned_cols=111 Identities=9% Similarity=0.055 Sum_probs=66.1
Q ss_pred CccchhhhhCchhHHHHHHhcCCCCCCcccChhhhhH-----------HHHHHHHHHHHHHhhhhccccccccccccCCc
Q psy2890 645 DPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEG-----------AYRFLNRVWNFSYILAPRIINIINLNIFHNDF 713 (893)
Q Consensus 645 ~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~-----------~~~~l~rl~n~~~~~~~~~~~~~~~~~~~~~~ 713 (893)
+|+++.+..|+-|+..-.+.. .-.++..|+++.+-. ++..|..+-+.+..+.. .....+
T Consensus 405 ~~~~vad~lg~sAviv~d~k~-rr~s~yeF~w~~~~~~~gdtg~yLQY~HsRL~Slerk~~~~~~--~~l~~~------- 474 (567)
T KOG1195|consen 405 NPDEVADRLGLSAVIVQDFKG-RRISNYEFSWNRVLSFEGDTGPYLQYTHSRLRSLERKFSDVTL--DDLDEI------- 474 (567)
T ss_pred CHHHHHHHHhhHHHHHHHHHH-HhcccceEEhhhhheecCCchHHHHHHHHHHHHHHHhccccCc--hhhhcc-------
Confidence 345555567887877765543 345677777775422 12223333322221110 001111
Q ss_pred cccCCC-hhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcc
Q psy2890 714 SVIKFN-NNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIFNILERINSE 765 (893)
Q Consensus 714 ~~~~~~-~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fvn~l~~~~k~ 765 (893)
+...++ +.-..++..|..+-+-+..+++.++....+..++.+...++.+++.
T Consensus 475 d~~~l~ep~~~~Lv~~L~~fp~vve~s~e~lE~~~lV~YL~~La~a~s~~yk~ 527 (567)
T KOG1195|consen 475 DFSLLTEPDALLLVRLLLQFPEVVEKSMEQLEPCTLVTYLFKLAHAVSSAYKI 527 (567)
T ss_pred chhhcCChhHHHHHHHHhhhHHHHHHHHHhhcchhHHHHHHHHHHHHHhHHhh
Confidence 111111 2235678888999999999999999999999999999999886643
No 177
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=64.40 E-value=13 Score=42.44 Aligned_cols=78 Identities=14% Similarity=0.144 Sum_probs=43.6
Q ss_pred CcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy2890 36 GKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQL 115 (893)
Q Consensus 36 ~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l 115 (893)
+++.++++.= |||.+||||.. +..--+.+++ -.|++|.+..| |-|.+- ..+.|.++.++ .+....+...+
T Consensus 65 ~~~~v~~G~~-PTG~lHLG~g~--i~~~~~~~lq-~~G~~v~~~Ia-D~hA~~----~~~~g~~l~~i-~~~~~~~~~~~ 134 (383)
T PTZ00126 65 ERPICYDGFE-PSGRMHIAQGI--LKAINVNKLT-KAGCVFVFWVA-DWFALL----NNKMGGDLEKI-RKVGEYFIEVW 134 (383)
T ss_pred CCCEEEEEEC-CCCcccccchH--hHhHHHHHHH-hCCCeEEEEEc-cceeec----CCCCCCCHHHH-HHHHHHHHHHH
Confidence 4455666653 67999999921 1111223333 44888876655 333320 01233445444 44556677788
Q ss_pred HHcCCccc
Q psy2890 116 SSLGLAID 123 (893)
Q Consensus 116 ~~lgi~~D 123 (893)
..+|+..+
T Consensus 135 ~A~GlDp~ 142 (383)
T PTZ00126 135 KAAGMDMD 142 (383)
T ss_pred HHhCCCcc
Confidence 99998765
No 178
>smart00840 DALR_2 This DALR domain is found in cysteinyl-tRNA-synthetases.
Probab=64.21 E-value=20 Score=28.25 Aligned_cols=28 Identities=4% Similarity=0.131 Sum_probs=24.8
Q ss_pred HHHHH-hcCCHHHHHHHHHHHHHHHHHhh
Q psy2890 736 INRDI-KRIQYNTVVSGCMKIFNILERIN 763 (893)
Q Consensus 736 v~~~~-e~~~f~~ai~~l~~fvn~l~~~~ 763 (893)
+.++| ++++++.|++.+++++..++++.
T Consensus 2 f~~al~DD~NT~~Al~~l~~l~~~~N~~l 30 (56)
T smart00840 2 FEEAMDDDFNTPEALAVLFELAREINRLL 30 (56)
T ss_pred hHHHhhcccCcHHHHHHHHHHHHHHHHHh
Confidence 56788 88999999999999999998865
No 179
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=64.20 E-value=10 Score=42.34 Aligned_cols=27 Identities=30% Similarity=0.204 Sum_probs=19.9
Q ss_pred cccccCCC---CccCccchhhhhCchhHHHHHHhc
Q psy2890 634 EKMSKSKN---NGIDPQTQINTYGADSTRLFIIFS 665 (893)
Q Consensus 634 ~KMSKSkg---N~i~p~~ii~~yGaD~lRl~ll~~ 665 (893)
.|||||.+ |.|...| .+|.++=-+..+
T Consensus 192 ~KMSKS~~~~~~~I~l~D-----~~~~I~~KI~~a 221 (333)
T PRK00927 192 KKMSKSDPNDNNTINLLD-----DPKTIAKKIKKA 221 (333)
T ss_pred CCCCCCCCCCCCeEEeeC-----CHHHHHHHHHhC
Confidence 49999999 7887766 566666666653
No 180
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=61.48 E-value=11 Score=39.12 Aligned_cols=16 Identities=25% Similarity=0.171 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHcCCC
Q psy2890 409 EATNAISTDLIKLGLG 424 (893)
Q Consensus 409 ~a~~~i~~~L~~~~~~ 424 (893)
+.-.++++.|.+.|..
T Consensus 96 ~~~~~~i~~L~~~g~~ 111 (212)
T cd00671 96 GLMGKVVELLEELGLL 111 (212)
T ss_pred hHHHHHHHHHHHCCCE
Confidence 3457788999998865
No 181
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=61.05 E-value=8.6 Score=43.81 Aligned_cols=73 Identities=23% Similarity=0.335 Sum_probs=38.7
Q ss_pred cEEEEecCCCCCC-cCcchHHHhHHHHHHHHHHHHHcCCccccccccccc---cHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy2890 37 KFYTCSMLPYPSG-KLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAF---GMPAENAAILNNTSPAKWTYDNVSYMK 112 (893)
Q Consensus 37 ~~~i~~~~P~~nG-~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~---G~pie~~a~~~g~~~~~~~~~~~~~~~ 112 (893)
+.-+..++= ||| .||+||.... -.++| +...|++|....| |-| |.|. -....+..-..+...++.+.++
T Consensus 32 ~~~~Y~GfD-PTa~slHlGhlv~l---~kL~~-fQ~aGh~~ivLig-d~ta~IgDps-Gk~e~r~~l~~e~v~~n~~~i~ 104 (401)
T COG0162 32 PLRVYIGFD-PTAPSLHLGHLVPL---MKLRR-FQDAGHKPIVLIG-DATAMIGDPS-GKSEERKLLTRETVLENAETIK 104 (401)
T ss_pred CceEEEeeC-CCCCccchhhHHHH---HHHHH-HHHCCCeEEEEec-ccceecCCCC-CCHHHHhhccHHHHHHHHHHHH
Confidence 344444543 678 8999997652 22333 3457999988777 233 3332 1112222223444555555555
Q ss_pred HHHH
Q psy2890 113 KQLS 116 (893)
Q Consensus 113 ~~l~ 116 (893)
+|+.
T Consensus 105 ~ql~ 108 (401)
T COG0162 105 KQLG 108 (401)
T ss_pred HHhc
Confidence 5543
No 182
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=60.98 E-value=12 Score=41.15 Aligned_cols=22 Identities=18% Similarity=0.054 Sum_probs=15.1
Q ss_pred ceeeecchhhHHHHHHHHHHHHH
Q psy2890 538 VDQYIGGIEHAILHLLYARFWTK 560 (893)
Q Consensus 538 vD~~igG~D~~i~Hl~y~rf~~~ 560 (893)
.++.--|.|| ..|+=-+|=+..
T Consensus 146 a~~VPVG~DQ-~qHleLtRDiA~ 167 (314)
T COG0180 146 ATLVPVGEDQ-DQHLELTRDIAR 167 (314)
T ss_pred CCeeccCCCc-hHHHHHHHHHHH
Confidence 5777789998 568765554443
No 183
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=59.30 E-value=22 Score=34.64 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=23.7
Q ss_pred HHHHHHHcCCccccccccccccHHHHHHHHHcC
Q psy2890 65 MYRYMRMNGYNVLMPMGWDAFGMPAENAAILNN 97 (893)
Q Consensus 65 ~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g 97 (893)
++||+|+.|++|.+..+.++.. +...|.++|
T Consensus 12 Lar~LR~lG~Dt~~~~~~~D~~--il~~A~~e~ 42 (147)
T PF01927_consen 12 LARWLRLLGYDTLYSRDIDDDE--ILELAREEG 42 (147)
T ss_pred HHHHHHHCCCcEEEeCCCChHH--HHHHhhhCC
Confidence 6899999999999999776554 445565555
No 184
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=58.09 E-value=8 Score=39.05 Aligned_cols=44 Identities=9% Similarity=0.080 Sum_probs=35.1
Q ss_pred hcCcceeeceeeeecCCCCcccccchhcc--CcccCCCcccEEEee
Q psy2890 148 KRGIIYKKTGIVNWDPIEKTVLANEQVIN--GRGWRSDAIIEKKKI 191 (893)
Q Consensus 148 ~~Gliy~~~~~v~~~~~~~t~l~~~ev~~--g~c~~~~~~v~~~~~ 191 (893)
+.-+-+......|.||.|+.-.+-.|..+ ..||.||.+.++.+.
T Consensus 106 k~~l~~e~~~~~Y~Cp~C~~rytf~eA~~~~F~Cp~Cg~~L~~~dn 151 (178)
T PRK06266 106 KEQLEEEENNMFFFCPNCHIRFTFDEAMEYGFRCPQCGEMLEEYDN 151 (178)
T ss_pred HHHhhhccCCCEEECCCCCcEEeHHHHhhcCCcCCCCCCCCeeccc
Confidence 44566777888999999998888777763 589999999987543
No 185
>PLN02886 aminoacyl-tRNA ligase
Probab=57.99 E-value=17 Score=41.25 Aligned_cols=90 Identities=12% Similarity=0.189 Sum_probs=49.7
Q ss_pred EEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Q psy2890 40 TCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLG 119 (893)
Q Consensus 40 i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 119 (893)
|+++. -|+|.+||||..+.+- -+.+++. |+++.+. =.|-|-+- ...++.++. ++...+...+..+|
T Consensus 49 v~sGi-qPSG~lHLGnylGai~--~~v~lQ~--~~~~~~~-IADlHAlt-------~~~~~~~lr-~~~~~~~a~~lA~G 114 (389)
T PLN02886 49 VVSGV-QPTGSIHLGNYLGAIK--NWVALQE--TYDTFFC-VVDLHAIT-------LPHDPRELG-KATRSTAAIYLACG 114 (389)
T ss_pred EEEEE-CCCCccHHHHHHHHHH--HHHHHhc--cCCEEEE-EecHHHhh-------CCCCHHHHH-HHHHHHHHHHHHcC
Confidence 45554 2569999999777542 2333443 8887543 33444331 123555443 44456788999999
Q ss_pred CcccccCccccC-ChhhHHHHHHHHH
Q psy2890 120 LAIDWSREIITC-SPKYYKWNQWIFL 144 (893)
Q Consensus 120 i~~Dw~~~~~T~-~~~~~~~v~~~f~ 144 (893)
+..+=..++.-+ -+++.+. .|++.
T Consensus 115 lDP~ks~if~QS~v~e~~eL-~wil~ 139 (389)
T PLN02886 115 IDPSKASVFVQSHVPAHAEL-MWLLS 139 (389)
T ss_pred cCccceEEEEeCCCchhHHH-HHHHH
Confidence 988733333333 3444332 44443
No 186
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=56.09 E-value=71 Score=29.59 Aligned_cols=51 Identities=2% Similarity=0.083 Sum_probs=43.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccccC
Q psy2890 719 NNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIFNILERINSETKFD 769 (893)
Q Consensus 719 ~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fvn~l~~~~k~~~~~ 769 (893)
++.++.++..+..+...+..++.+.+++.++..+.++...+++|+......
T Consensus 35 ~~~E~~L~~~i~~~~~~i~~~~~~~~~~~l~~~l~~L~~~~~~fy~~v~V~ 85 (122)
T smart00836 35 EPEELALLRLLARFPEVLEAAAETLEPHRLANYLYDLASAFHSFYNKCRVL 85 (122)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHccCccc
Confidence 456778888888888888999999999999999999999999988654443
No 187
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=53.68 E-value=26 Score=39.19 Aligned_cols=23 Identities=22% Similarity=0.172 Sum_probs=15.9
Q ss_pred CceeeecchhhHHHHHHHHHHHHH
Q psy2890 537 PVDQYIGGIEHAILHLLYARFWTK 560 (893)
Q Consensus 537 PvD~~igG~D~~i~Hl~y~rf~~~ 560 (893)
.+|+..+|.|| ..|+-.+|=+..
T Consensus 149 ~~d~VpvG~DQ-~qhleLtRdiA~ 171 (332)
T PRK12556 149 QATHVPVGKDQ-IQHIEIARDIAT 171 (332)
T ss_pred cCCEEEecccc-HHHHHHHHHHHH
Confidence 35788899999 557666665543
No 188
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=50.93 E-value=8.2 Score=24.98 Aligned_cols=23 Identities=4% Similarity=-0.031 Sum_probs=16.4
Q ss_pred ecCCCCcccccchhccCcccCCCccc
Q psy2890 161 WDPIEKTVLANEQVINGRGWRSDAII 186 (893)
Q Consensus 161 ~~~~~~t~l~~~ev~~g~c~~~~~~v 186 (893)
|||.|+..+++. ...|+.||+++
T Consensus 1 ~Cp~CG~~~~~~---~~fC~~CG~~l 23 (23)
T PF13240_consen 1 YCPNCGAEIEDD---AKFCPNCGTPL 23 (23)
T ss_pred CCcccCCCCCCc---CcchhhhCCcC
Confidence 588888877663 24588888764
No 189
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=48.58 E-value=27 Score=39.78 Aligned_cols=14 Identities=36% Similarity=0.461 Sum_probs=11.7
Q ss_pred cccccCCCCccCcc
Q psy2890 634 EKMSKSKNNGIDPQ 647 (893)
Q Consensus 634 ~KMSKSkgN~i~p~ 647 (893)
+|||||.||.|+.+
T Consensus 220 ~KmgKS~~~~i~l~ 233 (377)
T TIGR00234 220 EKMGKSGGGAVSLD 233 (377)
T ss_pred CCccCCCCCcccCC
Confidence 89999999987543
No 190
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=47.95 E-value=36 Score=38.78 Aligned_cols=26 Identities=35% Similarity=0.259 Sum_probs=20.0
Q ss_pred cccccCCCCccCccchhhhhCchhHHHHHHh
Q psy2890 634 EKMSKSKNNGIDPQTQINTYGADSTRLFIIF 664 (893)
Q Consensus 634 ~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~ 664 (893)
.|||||.+|.|...| .+|.+|--++.
T Consensus 263 ~KMSKS~~n~I~L~D-----s~~~I~kKI~~ 288 (398)
T PRK12283 263 QKMSKSYGNTIGLRE-----DPESVTKKIRT 288 (398)
T ss_pred CcCCCCCCCeeeCcC-----CHHHHHHHHHh
Confidence 799999999887766 56666666664
No 191
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=47.53 E-value=59 Score=37.66 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=25.3
Q ss_pred cccccCCCCccCccchhh-hhCchhHHHHHHhcCC
Q psy2890 634 EKMSKSKNNGIDPQTQIN-TYGADSTRLFIIFSAP 667 (893)
Q Consensus 634 ~KMSKSkgN~i~p~~ii~-~yGaD~lRl~ll~~~~ 667 (893)
+||||+.|. .+..++.+ .|-+++++=|++..+.
T Consensus 234 ~KLSKR~~~-~~v~~~r~~G~~PeAi~n~l~~lG~ 267 (433)
T PRK12410 234 KKMSKRDNA-SSVKWLLEQGFLPSAIANYLILLGN 267 (433)
T ss_pred CeeecccCh-hhHHHHHHCCCCHHHHHHHHHHhCC
Confidence 799999885 34555554 6889999999988763
No 192
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=46.90 E-value=64 Score=39.54 Aligned_cols=77 Identities=14% Similarity=0.182 Sum_probs=41.8
Q ss_pred CcEEEEecCCCCCCcCcchHHHhHHHHHHHHHH-HHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy2890 36 GKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRY-MRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQ 114 (893)
Q Consensus 36 ~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~-~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~ 114 (893)
+++.+++|.= |||.+||||. +++ .+..+ .+..|++|.+..+ |-|.+ . ..+.|.+..+... ....+...
T Consensus 31 ~~~rv~sGi~-PTG~lHLGng---~~~-aik~~~~~q~g~~~~~lIA-D~HAl---t-~~~~~~~l~~i~~-~~~~~~~~ 99 (682)
T PTZ00348 31 PLIRCYDGFE-PSGRMHIAQG---IFK-AVNVNKCTQAGCEFVFWVA-DWFAL---M-NDKVGGELEKIRI-VGRYLIEV 99 (682)
T ss_pred CCCEEEEeeC-CCCcCeeccH---HHH-HHHHHHHHhCCCeEEEEEc-chhhh---c-CCCCCCCHHHHHH-HHHHHHHH
Confidence 4556676653 7799999993 222 22111 2246888765544 22222 1 1122334444332 23457778
Q ss_pred HHHcCCccc
Q psy2890 115 LSSLGLAID 123 (893)
Q Consensus 115 l~~lgi~~D 123 (893)
+..+|+..+
T Consensus 100 ~lA~GlDpe 108 (682)
T PTZ00348 100 WKAAGMDMD 108 (682)
T ss_pred HHHcCCCcc
Confidence 999999877
No 193
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=45.82 E-value=28 Score=40.94 Aligned_cols=32 Identities=13% Similarity=0.207 Sum_probs=26.5
Q ss_pred cccccCCCCccCccchhhh-hCchhHHHHHHhcC
Q psy2890 634 EKMSKSKNNGIDPQTQINT-YGADSTRLFIIFSA 666 (893)
Q Consensus 634 ~KMSKSkgN~i~p~~ii~~-yGaD~lRl~ll~~~ 666 (893)
.||||.+| .++.+++++. |-+.+++-|++..+
T Consensus 250 ~klSKR~g-~~~l~~l~~~G~~p~Ai~n~l~~lG 282 (476)
T PRK01406 250 KKLSKRHG-ATSVEQYRDMGYLPEALLNYLALLG 282 (476)
T ss_pred CcccCcCC-ccCHHHHHHCCCCHHHHHHHHHHhC
Confidence 79999999 7888888885 57888888887654
No 194
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=45.68 E-value=0.96 Score=55.70 Aligned_cols=100 Identities=18% Similarity=0.141 Sum_probs=61.4
Q ss_pred EEEEEeccccccccccEEEECCCChHHHHHhhchHHHHHHHHHHhhcCcccccccccccc-ccceEEEcCCCCCe--ee-
Q psy2890 256 KLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYKKNNNIESNNLLKKSI-LTQLKVLHPLTNQE--IK- 331 (893)
Q Consensus 256 ~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~~~~P~~~~~--ip- 331 (893)
.....|.+|||+.|.|..+|+|+.-+.......+... ...... ......+.-|. +.+.---|||.++. -|
T Consensus 207 l~~l~~~wPE~Vk~mq~nWIg~s~g~~v~f~~~~~~~---~~~~~v---fttr~dt~~gvt~~~~a~~h~lv~~~~~~~~ 280 (814)
T COG0495 207 LDKLATLWPETVKGMQRNWIGPSEGYEVAFVVDGEEE---IVSIEV---FTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQ 280 (814)
T ss_pred hhhhccCCchhHHHHHHcCcCCCCCeEEEEecCCccc---ceeeee---eeccCccccCeEEEEEeCCchHHHHHhcCcc
Confidence 3566677999999999999999987754332111000 000000 00001122232 34444446665432 23
Q ss_pred -EEEecccccCCCCCcc-ccCCCCCHHHHHHHH
Q psy2890 332 -VFVVNYVIEKSYGRAA-IGVPAHNKHDFYFAK 362 (893)
Q Consensus 332 -v~~~~~V~~~~~GTG~-~~~Pah~~~D~~~~~ 362 (893)
+.+++||+ ...|||. +.+|+|.+.|+.+-.
T Consensus 281 ~~~~a~fv~-~~~~~~~~~~~~~~~~k~gv~~g 312 (814)
T COG0495 281 TPLVAEFVD-ECKGTGVVESVPAHAEKDGVFLG 312 (814)
T ss_pred chhHHHHHH-HhcCCCceeeeeccCCCcceecc
Confidence 78889999 9999999 999999999987654
No 195
>KOG2145|consensus
Probab=43.09 E-value=20 Score=38.36 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=22.2
Q ss_pred CCcEEEEecCCCCCCcCcchHHHhHHH
Q psy2890 35 NGKFYTCSMLPYPSGKLHMGHVRNYTI 61 (893)
Q Consensus 35 ~~~~~i~~~~P~~nG~lHiGH~~~~~~ 61 (893)
+++||++++--..++.+|+||..-++.
T Consensus 83 ~kpFyLYTGRGpSS~smHlGHliPFif 109 (397)
T KOG2145|consen 83 GKPFYLYTGRGPSSESMHLGHLIPFIF 109 (397)
T ss_pred CCceEEEeCCCCCccccccccchhHHH
Confidence 578999998766789999999876643
No 196
>COG4332 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.50 E-value=13 Score=36.83 Aligned_cols=22 Identities=41% Similarity=0.877 Sum_probs=17.5
Q ss_pred ceeeccccccCCccCeEEcCCCCee
Q psy2890 434 DWAISRQRYWGTPIPIIYCDSCGSV 458 (893)
Q Consensus 434 DW~ISRQr~WG~pIPi~~~~~~~~v 458 (893)
+|.|+ +=|.|=|+.+|+.||.+
T Consensus 5 ~WtIt---p~~~pq~~k~C~~Cg~k 26 (203)
T COG4332 5 IWTIT---PVGAPQPAKRCNSCGVK 26 (203)
T ss_pred EEEec---cccCChhhhhCcccCCc
Confidence 68887 56888899999888754
No 197
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=41.61 E-value=38 Score=39.94 Aligned_cols=32 Identities=16% Similarity=0.133 Sum_probs=23.9
Q ss_pred cccccCCCCccCccchhh-hhCchhHHHHHHhcC
Q psy2890 634 EKMSKSKNNGIDPQTQIN-TYGADSTRLFIIFSA 666 (893)
Q Consensus 634 ~KMSKSkgN~i~p~~ii~-~yGaD~lRl~ll~~~ 666 (893)
.||||+.|.. ...++.+ .|-+.+++=|++..|
T Consensus 239 ~KLSKR~g~~-~i~~~r~~G~~Peai~n~la~LG 271 (513)
T PRK14895 239 AKLSKRHGAL-GIEAYKDMGYLPESLCNYLLRLG 271 (513)
T ss_pred CccccccCch-hHHHHHHCCCCHHHHHHHHHHhC
Confidence 7999999874 3444444 588999999998654
No 198
>PLN02886 aminoacyl-tRNA ligase
Probab=41.27 E-value=40 Score=38.34 Aligned_cols=24 Identities=21% Similarity=0.112 Sum_probs=17.8
Q ss_pred CCceeeecchhhHHHHHHHHHHHHH
Q psy2890 536 MPVDQYIGGIEHAILHLLYARFWTK 560 (893)
Q Consensus 536 ~PvD~~igG~D~~i~Hl~y~rf~~~ 560 (893)
+-+|+...|.|| ..|+-.+|=+..
T Consensus 183 ~~a~~VPVG~DQ-~qH~eLtRdiA~ 206 (389)
T PLN02886 183 YQADLVPVGEDQ-KQHLELTRDIAE 206 (389)
T ss_pred cCCCeEEEccch-HHHHHHHHHHHH
Confidence 357899999999 567766775543
No 199
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=39.71 E-value=22 Score=27.10 Aligned_cols=33 Identities=9% Similarity=-0.322 Sum_probs=24.1
Q ss_pred eeecCCCCcccccchhc-cCcccCCCcccEEEee
Q psy2890 159 VNWDPIEKTVLANEQVI-NGRGWRSDAIIEKKKI 191 (893)
Q Consensus 159 v~~~~~~~t~l~~~ev~-~g~c~~~~~~v~~~~~ 191 (893)
.+=|+.|+..+.-.+-. .-+||.||.++.+++.
T Consensus 3 ~y~C~~CG~~~~~~~~~~~~~Cp~CG~~~~~~~~ 36 (46)
T PRK00398 3 EYKCARCGREVELDEYGTGVRCPYCGYRILFKER 36 (46)
T ss_pred EEECCCCCCEEEECCCCCceECCCCCCeEEEccC
Confidence 45699999876544443 5689999999887653
No 200
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=38.57 E-value=21 Score=33.85 Aligned_cols=40 Identities=13% Similarity=-0.053 Sum_probs=27.3
Q ss_pred HHHhcCcceeeceeeeecCCCCcccccchhccC--cccCCCcccEEEee
Q psy2890 145 KMFKRGIIYKKTGIVNWDPIEKTVLANEQVING--RGWRSDAIIEKKKI 191 (893)
Q Consensus 145 ~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g--~c~~~~~~v~~~~~ 191 (893)
+|.-+|--- .-.-||.|+++|=. .+| .||.||..++.++.
T Consensus 18 ~lLl~GAkM----L~~hCp~Cg~PLF~---KdG~v~CPvC~~~~~~v~~ 59 (131)
T COG1645 18 ELLLQGAKM----LAKHCPKCGTPLFR---KDGEVFCPVCGYREVVVEE 59 (131)
T ss_pred HHHHhhhHH----HHhhCcccCCccee---eCCeEECCCCCceEEEeec
Confidence 555555433 33459999999966 677 59999975555443
No 201
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=36.84 E-value=33 Score=26.76 Aligned_cols=36 Identities=17% Similarity=-0.060 Sum_probs=26.5
Q ss_pred eeeeecCCCCcccccchhccC-cccCCCcccEEEeec
Q psy2890 157 GIVNWDPIEKTVLANEQVING-RGWRSDAIIEKKKIP 192 (893)
Q Consensus 157 ~~v~~~~~~~t~l~~~ev~~g-~c~~~~~~v~~~~~~ 192 (893)
..+|=|..|++-+...+...+ +|+.||..+-.+.-+
T Consensus 4 ~~~Y~C~~Cg~~~~~~~~~~~irCp~Cg~rIl~K~R~ 40 (49)
T COG1996 4 MMEYKCARCGREVELDQETRGIRCPYCGSRILVKERP 40 (49)
T ss_pred eEEEEhhhcCCeeehhhccCceeCCCCCcEEEEeccC
Confidence 456779999998864444444 899999988776543
No 202
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=36.67 E-value=90 Score=29.99 Aligned_cols=51 Identities=6% Similarity=-0.135 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHHhcCcceee-------ceeeeecCCCCcccccch--------------------hccCcccCCCcc
Q psy2890 134 KYYKWNQWIFLKMFKRGIIYKK-------TGIVNWDPIEKTVLANEQ--------------------VINGRGWRSDAI 185 (893)
Q Consensus 134 ~~~~~v~~~f~~L~~~Gliy~~-------~~~v~~~~~~~t~l~~~e--------------------v~~g~c~~~~~~ 185 (893)
-..+..+..|..+ .+|-+..+ ....++|+.|+..-+-.+ -....||.||+.
T Consensus 39 V~pe~L~fafe~l-~~gt~~ega~L~i~~~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP~Cgs~ 116 (135)
T PRK03824 39 VDKEIVEFALNEL-LKGTILEGAEIIFEEEEAVLKCRNCGNEWSLKEVKESLDEEIREAIHFIPEVVHAFLKCPKCGSR 116 (135)
T ss_pred hhHHHHHHHHHHH-HcCCcccCCEEEEEecceEEECCCCCCEEecccccccccccccccccccccccccCcCCcCCCCC
Confidence 3334455555543 34555444 458899999996554432 123469999974
No 203
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=36.28 E-value=84 Score=35.14 Aligned_cols=65 Identities=22% Similarity=0.308 Sum_probs=37.8
Q ss_pred CCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCccc
Q psy2890 47 PSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGLAID 123 (893)
Q Consensus 47 ~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~D 123 (893)
|||.+||||..+.+.. .. ++.-.|. |.+.. .|-|.+-. ...++.+.. ++......++..+|+..+
T Consensus 11 PTG~~HLGn~l~~~~~--~~-~lQ~~~~-~~i~I-aD~ha~~~------~~~~~~~i~-~~~~~~~~~~lA~G~dp~ 75 (333)
T PRK12282 11 PTGKLHLGHYVGSLKN--RV-ALQNEHE-QFVLI-ADQQALTD------NAKNPEKIR-RNILEVALDYLAVGIDPA 75 (333)
T ss_pred CCCcchHHHHHHHHHH--HH-HHHhCCC-EEEEE-ccchhHhC------CCCCHHHHH-HHHHHHHHHHHHhCcChh
Confidence 5799999998875443 11 2233454 54333 55554311 133455443 455567778889999887
No 204
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=35.95 E-value=49 Score=32.92 Aligned_cols=27 Identities=15% Similarity=-0.163 Sum_probs=21.7
Q ss_pred eeecCCCCcccccchhccCcccCCCcccE
Q psy2890 159 VNWDPIEKTVLANEQVINGRGWRSDAIIE 187 (893)
Q Consensus 159 v~~~~~~~t~l~~~ev~~g~c~~~~~~v~ 187 (893)
+|-||.|+-...+ + -.+.||.||++-+
T Consensus 134 ~~vC~vCGy~~~g-e-~P~~CPiCga~k~ 160 (166)
T COG1592 134 VWVCPVCGYTHEG-E-APEVCPICGAPKE 160 (166)
T ss_pred EEEcCCCCCcccC-C-CCCcCCCCCChHH
Confidence 8999999988777 2 3469999998753
No 205
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=35.73 E-value=1.1e+02 Score=32.54 Aligned_cols=49 Identities=20% Similarity=0.159 Sum_probs=34.9
Q ss_pred cccccCCCC------cc----Ccc-----chhh-hhCchhHHHHHHhcCCCCCCcccChhhhhHH
Q psy2890 634 EKMSKSKNN------GI----DPQ-----TQIN-TYGADSTRLFIIFSAPPEKNLEWSDIGIEGA 682 (893)
Q Consensus 634 ~KMSKSkgN------~i----~p~-----~ii~-~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~ 682 (893)
+||||+.+- .+ +|. .+.. .|-+++++=|++..|.-..+..++.+.+...
T Consensus 163 ~kLSKR~~~~~i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~s~~~~~~~~~~l~~~ 227 (238)
T cd00807 163 TVMSKRKLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKADSTIDWDKLEAC 227 (238)
T ss_pred CCccCcCchhccccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHH
Confidence 799999962 12 221 2111 5779999999999887778888888877654
No 206
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=33.96 E-value=21 Score=23.68 Aligned_cols=24 Identities=8% Similarity=-0.082 Sum_probs=16.9
Q ss_pred eecCCCCcccccchhccCcccCCCccc
Q psy2890 160 NWDPIEKTVLANEQVINGRGWRSDAII 186 (893)
Q Consensus 160 ~~~~~~~t~l~~~ev~~g~c~~~~~~v 186 (893)
..||.|++.++.. .-.|+.||+++
T Consensus 3 ~~Cp~Cg~~~~~~---~~fC~~CG~~L 26 (26)
T PF13248_consen 3 MFCPNCGAEIDPD---AKFCPNCGAKL 26 (26)
T ss_pred CCCcccCCcCCcc---cccChhhCCCC
Confidence 3688998866552 45788888763
No 207
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=33.68 E-value=25 Score=35.27 Aligned_cols=105 Identities=10% Similarity=-0.020 Sum_probs=60.2
Q ss_pred cHHHHHHHHHcC-CCHHHHHHHH------HHHHHHHHHHcCCcc---------cccCccccCChhhH-----HHHHHHHH
Q psy2890 86 GMPAENAAILNN-TSPAKWTYDN------VSYMKKQLSSLGLAI---------DWSREIITCSPKYY-----KWNQWIFL 144 (893)
Q Consensus 86 G~pie~~a~~~g-~~~~~~~~~~------~~~~~~~l~~lgi~~---------Dw~~~~~T~~~~~~-----~~v~~~f~ 144 (893)
|.++.....++| .+-.+++... +..+...|..-|+-. +|-.+++..+.... ..+..+..
T Consensus 20 ~~~v~~~l~~kge~tDeela~~l~i~~~~vrriL~~L~e~~li~~~k~rd~~~~~~~y~w~~~~~~v~~~l~~~~~~~le 99 (176)
T COG1675 20 AVLVVDALLEKGELTDEELAELLGIKKNEVRRILYALYEDGLISYRKKRDEESGWEEYTWYINYEKVLEVLKGKKRKILE 99 (176)
T ss_pred hhHHHHHHHhcCCcChHHHHHHhCccHHHHHHHHHHHHhCCceEEEeecccCCCcEEEEEEechHHHHHHHHHHHHHHHH
Confidence 555555555555 3333333322 233344444444422 45555555554322 22334444
Q ss_pred HHHhcCcceeeceeeeecCCCCcccccchhc--cCcccCCCcccEEEee
Q psy2890 145 KMFKRGIIYKKTGIVNWDPIEKTVLANEQVI--NGRGWRSDAIIEKKKI 191 (893)
Q Consensus 145 ~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~--~g~c~~~~~~v~~~~~ 191 (893)
+|..+ +-+......+-||.|..-+|-.|-. +..||.||+.+++-+.
T Consensus 100 ~Lk~~-le~~~~~~~y~C~~~~~r~sfdeA~~~~F~Cp~Cg~~L~~~d~ 147 (176)
T COG1675 100 KLKRK-LEKETENNYYVCPNCHVKYSFDEAMELGFTCPKCGEDLEEYDS 147 (176)
T ss_pred HHHHH-HHhhccCCceeCCCCCCcccHHHHHHhCCCCCCCCchhhhccc
Confidence 44433 5556677888899999988876664 4699999999986543
No 208
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=32.03 E-value=1.1e+02 Score=36.17 Aligned_cols=50 Identities=12% Similarity=0.111 Sum_probs=38.2
Q ss_pred cccccCC------CCccC---------ccchhh-hhCchhHHHHHHhcCCCCCCcccChhhhhHHH
Q psy2890 634 EKMSKSK------NNGID---------PQTQIN-TYGADSTRLFIIFSAPPEKNLEWSDIGIEGAY 683 (893)
Q Consensus 634 ~KMSKSk------gN~i~---------p~~ii~-~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~~ 683 (893)
.||||++ .+.|+ ...+.. .|-++|+|-|++..|.-..+...+.+.++.+.
T Consensus 245 ~kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~~~l~~~n 310 (523)
T PLN03233 245 TVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRRVVNLDWAKFWAEN 310 (523)
T ss_pred CcccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhCCCCCCceecHHHHHHHH
Confidence 7999998 34553 344333 58899999999999988888888888887653
No 209
>PRK13794 hypothetical protein; Provisional
Probab=31.24 E-value=35 Score=40.18 Aligned_cols=36 Identities=8% Similarity=0.025 Sum_probs=28.0
Q ss_pred ceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeec
Q psy2890 152 IYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIP 192 (893)
Q Consensus 152 iy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~ 192 (893)
.|.++..++||+.|+.+|- ..+|..||.+....+++
T Consensus 3 ~~~~~~~~~wc~~cn~p~~-----~~~c~~cg~~~~~~~~~ 38 (479)
T PRK13794 3 TYLGKIHLKWCDNCNVPVL-----GKKCAICGSETREVKVT 38 (479)
T ss_pred ceecceEEEEcCCCCCeec-----CCchhHhCCCeeEEecC
Confidence 5677888999999998754 46799999976665543
No 210
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=30.66 E-value=35 Score=31.74 Aligned_cols=35 Identities=11% Similarity=0.031 Sum_probs=26.0
Q ss_pred cceeeceeeeecCCCCcccccchhccCcccCCCccc
Q psy2890 151 IIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAII 186 (893)
Q Consensus 151 liy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v 186 (893)
+..+....+.||..|+.++.-++ -+.+||.||+.-
T Consensus 62 l~Ie~~p~~~~C~~C~~~~~~e~-~~~~CP~C~s~~ 96 (115)
T COG0375 62 LHIEEEPAECWCLDCGQEVELEE-LDYRCPKCGSIN 96 (115)
T ss_pred EEEEEeccEEEeccCCCeecchh-heeECCCCCCCc
Confidence 44555678899999988887744 445699999643
No 211
>PRK12496 hypothetical protein; Provisional
Probab=29.90 E-value=33 Score=34.17 Aligned_cols=34 Identities=6% Similarity=-0.170 Sum_probs=24.0
Q ss_pred ceeeeecCCCCcccccchhccCcccCCCcccEEEe
Q psy2890 156 TGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKK 190 (893)
Q Consensus 156 ~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~ 190 (893)
..-.+.|+.|++..... .....||.||+++..+.
T Consensus 124 ~~w~~~C~gC~~~~~~~-~~~~~C~~CG~~~~r~~ 157 (164)
T PRK12496 124 IKWRKVCKGCKKKYPED-YPDDVCEICGSPVKRKM 157 (164)
T ss_pred eeeeEECCCCCccccCC-CCCCcCCCCCChhhhcc
Confidence 34568899999876541 12357999999986554
No 212
>COG2995 PqiA Uncharacterized paraquat-inducible protein A [Function unknown]
Probab=29.80 E-value=36 Score=38.18 Aligned_cols=49 Identities=8% Similarity=0.170 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEe
Q psy2890 140 QWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKK 190 (893)
Q Consensus 140 ~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~ 190 (893)
.|++++++-++.........-.|..|+.....+ .+++|+|||.+.-.+.
T Consensus 201 ~~lwe~~~pq~~~~~~~~~~~~C~~C~~~~~~~--~~~~CpRC~~~Ly~rr 249 (418)
T COG2995 201 RWLWERFYPQTLATGAREGLRSCLCCHYILPHD--AEPRCPRCGSKLYVRR 249 (418)
T ss_pred HHHHHhhccccCCCCCcccceecccccccCCHh--hCCCCCCCCChhhccC
Confidence 466777776666544455566799998877664 6799999999986554
No 213
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=29.21 E-value=1.3e+02 Score=31.97 Aligned_cols=48 Identities=23% Similarity=0.165 Sum_probs=31.9
Q ss_pred cccccCCCC------cc----Cccc-----hhh-hhCchhHHHHHHhcCCCCCCcccChhhhhH
Q psy2890 634 EKMSKSKNN------GI----DPQT-----QIN-TYGADSTRLFIIFSAPPEKNLEWSDIGIEG 681 (893)
Q Consensus 634 ~KMSKSkgN------~i----~p~~-----ii~-~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~ 681 (893)
+||||+++- .| ||.. +.+ .|-+++++-|++..|--..+..++.+.++.
T Consensus 165 ~kLSKR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~~~~~~~~~~l~~ 228 (240)
T cd09287 165 GKLSTSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQTDATISWENLYA 228 (240)
T ss_pred CeeccccccccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCCCCCccCHHHHHH
Confidence 799999852 11 2222 221 578999999998887666676777666644
No 214
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=29.06 E-value=1.7e+02 Score=34.81 Aligned_cols=48 Identities=17% Similarity=0.061 Sum_probs=32.0
Q ss_pred cccccCCCCc---------------cCccchhh-hhCchhHHHHHHhcCCCCCCcccChhhhhH
Q psy2890 634 EKMSKSKNNG---------------IDPQTQIN-TYGADSTRLFIIFSAPPEKNLEWSDIGIEG 681 (893)
Q Consensus 634 ~KMSKSkgN~---------------i~p~~ii~-~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~ 681 (893)
.||||+++.. .+...+.+ .|-++|+|=|++..|.-..+...+...++.
T Consensus 240 ~kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~~~~~e~~~l~~ 303 (522)
T TIGR00440 240 TVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIEVVRLES 303 (522)
T ss_pred CCcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCCCCceehhhHHH
Confidence 7999999864 24444444 688999999999887544443334444444
No 215
>KOG2144|consensus
Probab=29.02 E-value=37 Score=36.48 Aligned_cols=42 Identities=21% Similarity=0.405 Sum_probs=24.2
Q ss_pred cCCceeeecchhhHHHHHHHHHHHHHHHHHhcCccCCCccceeeecceEec
Q psy2890 535 WMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILN 585 (893)
Q Consensus 535 ~~PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pfk~l~~~G~v~~ 585 (893)
++-||...||.||--.+. +|| ..|-+.|+ + =.-.++|-||-|
T Consensus 175 ~L~vD~qfgGvDQRKIf~-~A~---eylp~l~y---k--KrihLmnpMvPG 216 (360)
T KOG2144|consen 175 YLEVDAQFGGVDQRKIFV-LAE---EYLPDLGY---K--KRIHLMNPMVPG 216 (360)
T ss_pred HHhhhHHhcCccHHHHHH-HHH---HhhhhhCc---c--cceeecCCCCcc
Confidence 457999999999944332 122 33444554 2 123466777753
No 216
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=27.34 E-value=1.7e+02 Score=31.15 Aligned_cols=98 Identities=17% Similarity=0.231 Sum_probs=51.9
Q ss_pred CCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc---CCc
Q psy2890 45 PYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSL---GLA 121 (893)
Q Consensus 45 P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~l---gi~ 121 (893)
++++|.+++.+-... +. .+.+..+..|-+|+...|-...+.... +. .++ +-....++.+.+.+++. ||.
T Consensus 33 i~~~G~l~~~~~~~~-~~-~~~~~~~~~~~kvl~sigg~~~~~~~~--~~---~~~-~~r~~fi~~lv~~~~~~~~DGId 104 (253)
T cd06545 33 PDANGTLNANPVRSE-LN-SVVNAAHAHNVKILISLAGGSPPEFTA--AL---NDP-AKRKALVDKIINYVVSYNLDGID 104 (253)
T ss_pred ECCCCeEEecCcHHH-HH-HHHHHHHhCCCEEEEEEcCCCCCcchh--hh---cCH-HHHHHHHHHHHHHHHHhCCCcee
Confidence 567888887632111 11 233444557888876666443332111 11 011 11222333344444444 899
Q ss_pred ccccCccccCChhhHHHHHHHHHHHHhcCc
Q psy2890 122 IDWSREIITCSPKYYKWNQWIFLKMFKRGI 151 (893)
Q Consensus 122 ~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gl 151 (893)
+||+....+ ...|..+++++-..|.+.|+
T Consensus 105 iDwE~~~~~-~~~~~~fv~~Lr~~l~~~~~ 133 (253)
T cd06545 105 VDLEGPDVT-FGDYLVFIRALYAALKKEGK 133 (253)
T ss_pred EEeeccCcc-HhHHHHHHHHHHHHHhhcCc
Confidence 999875433 35677777777777766564
No 217
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=26.64 E-value=39 Score=22.25 Aligned_cols=23 Identities=4% Similarity=-0.246 Sum_probs=14.7
Q ss_pred cCCCCcccccch-hccCcccCCCc
Q psy2890 162 DPIEKTVLANEQ-VINGRGWRSDA 184 (893)
Q Consensus 162 ~~~~~t~l~~~e-v~~g~c~~~~~ 184 (893)
|.+|+..|+..+ -..-.||.||.
T Consensus 1 C~sC~~~i~~r~~~v~f~CPnCG~ 24 (24)
T PF07754_consen 1 CTSCGRPIAPREQAVPFPCPNCGF 24 (24)
T ss_pred CccCCCcccCcccCceEeCCCCCC
Confidence 456677777655 34556777773
No 218
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=26.60 E-value=1.7e+02 Score=35.23 Aligned_cols=50 Identities=16% Similarity=0.040 Sum_probs=37.4
Q ss_pred cccccCCCCc-cC---------ccc-hh-----hhhCchhHHHHHHhcCCCCCCcccChhhhhHHH
Q psy2890 634 EKMSKSKNNG-ID---------PQT-QI-----NTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAY 683 (893)
Q Consensus 634 ~KMSKSkgN~-i~---------p~~-ii-----~~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~~ 683 (893)
.||||+++.- |+ |.- -| ..|-++++|-|+...+.-..+..++.+.+....
T Consensus 287 ~kLSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG~~peai~~f~~~~Gvsk~~~~~d~~~L~~~n 352 (601)
T PTZ00402 287 SVMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSKTVNFMEWSKLWYFN 352 (601)
T ss_pred CcccccCChhhhhcCcccccCCCccHhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHH
Confidence 7999999741 11 211 02 268899999999999888889999999887653
No 219
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=26.22 E-value=1.1e+02 Score=35.73 Aligned_cols=32 Identities=6% Similarity=-0.007 Sum_probs=25.4
Q ss_pred cccccCCCCccCccchhh-hhCchhHHHHHHhcC
Q psy2890 634 EKMSKSKNNGIDPQTQIN-TYGADSTRLFIIFSA 666 (893)
Q Consensus 634 ~KMSKSkgN~i~p~~ii~-~yGaD~lRl~ll~~~ 666 (893)
.||||+.|. ++..++.+ .|-++|++=|++..+
T Consensus 239 ~KLSKR~g~-~sv~~~r~~G~~Peai~n~la~lG 271 (445)
T PRK12558 239 KGLSKRLGG-LSIRSLREDGIEPMAIASLLARLG 271 (445)
T ss_pred ccccccCCC-cCHHHHHHCCCCHHHHHHHHHHHc
Confidence 799999875 45555555 689999999998775
No 220
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=25.68 E-value=69 Score=24.40 Aligned_cols=34 Identities=12% Similarity=-0.280 Sum_probs=24.1
Q ss_pred eeecCCCCcccccchhccCcccCCCcccEEEeec
Q psy2890 159 VNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIP 192 (893)
Q Consensus 159 v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~ 192 (893)
+|-|..|++-..-.....-+|+.||..|-+++-+
T Consensus 2 ~Y~C~~Cg~~~~~~~~~~irC~~CG~rIlyK~R~ 35 (44)
T smart00659 2 IYICGECGRENEIKSKDVVRCRECGYRILYKKRT 35 (44)
T ss_pred EEECCCCCCEeecCCCCceECCCCCceEEEEeCC
Confidence 4568888886554333334899999999988754
No 221
>PLN02627 glutamyl-tRNA synthetase
Probab=25.42 E-value=1.1e+02 Score=36.34 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=25.0
Q ss_pred cccccCCCCccCccchhh-hhCchhHHHHHHhcC
Q psy2890 634 EKMSKSKNNGIDPQTQIN-TYGADSTRLFIIFSA 666 (893)
Q Consensus 634 ~KMSKSkgN~i~p~~ii~-~yGaD~lRl~ll~~~ 666 (893)
+||||..|. +...++.+ .|-+++++=|++..+
T Consensus 292 ~KLSKR~~~-~~v~~~r~~G~~PeAi~nyla~LG 324 (535)
T PLN02627 292 SKLSKRHGA-TSVGQFREMGYLPDAMVNYLALLG 324 (535)
T ss_pred CccccccCC-ccHHHHHHCCCCHHHHHHHHHHhC
Confidence 799999864 45666555 688999999998776
No 222
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=25.23 E-value=33 Score=31.84 Aligned_cols=35 Identities=17% Similarity=0.120 Sum_probs=28.0
Q ss_pred cCCCCcccccchhccCcccCCCcccEEEeeceeeEEec
Q psy2890 162 DPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKIT 199 (893)
Q Consensus 162 ~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~ 199 (893)
||.|+..|. |..-+|+.|+..|+=.=...||..|+
T Consensus 1 CPvCg~~l~---vt~l~C~~C~t~i~G~F~l~~~~~L~ 35 (113)
T PF09862_consen 1 CPVCGGELV---VTRLKCPSCGTEIEGEFELPWFARLS 35 (113)
T ss_pred CCCCCCceE---EEEEEcCCCCCEEEeeeccchhhcCC
Confidence 899988763 34457999999998877778888887
No 223
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=25.20 E-value=49 Score=30.93 Aligned_cols=33 Identities=6% Similarity=-0.179 Sum_probs=23.7
Q ss_pred eeeceeeeecCCCCcccccchhccCcccCCCcc
Q psy2890 153 YKKTGIVNWDPIEKTVLANEQVINGRGWRSDAI 185 (893)
Q Consensus 153 y~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~ 185 (893)
........+|..|+...+-.+....+||.||..
T Consensus 65 Ie~vp~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~ 97 (117)
T PRK00564 65 IVDEKVELECKDCSHVFKPNALDYGVCEKCHSK 97 (117)
T ss_pred EEecCCEEEhhhCCCccccCCccCCcCcCCCCC
Confidence 344567889999997655544444579999985
No 224
>PRK00420 hypothetical protein; Validated
Probab=24.15 E-value=42 Score=31.11 Aligned_cols=42 Identities=10% Similarity=-0.058 Sum_probs=27.8
Q ss_pred HHHHHHHhcCcceeeceeeeecCCCCcccccchhccC--cccCCCcccEE
Q psy2890 141 WIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVING--RGWRSDAIIEK 188 (893)
Q Consensus 141 ~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g--~c~~~~~~v~~ 188 (893)
+...++.-+|.--.. --||.|++.|-.. .+| .||.||..+.-
T Consensus 9 k~~a~~Ll~Ga~ml~----~~CP~Cg~pLf~l--k~g~~~Cp~Cg~~~~v 52 (112)
T PRK00420 9 KKAAELLLKGAKMLS----KHCPVCGLPLFEL--KDGEVVCPVHGKVYIV 52 (112)
T ss_pred HHHHHHHHhHHHHcc----CCCCCCCCcceec--CCCceECCCCCCeeee
Confidence 344455555655532 5599999988763 344 69999997653
No 225
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=23.42 E-value=1.2e+02 Score=35.60 Aligned_cols=31 Identities=13% Similarity=0.181 Sum_probs=20.8
Q ss_pred cccccCCCCccCccch-hhhhCchhHHHHHHhc
Q psy2890 634 EKMSKSKNNGIDPQTQ-INTYGADSTRLFIIFS 665 (893)
Q Consensus 634 ~KMSKSkgN~i~p~~i-i~~yGaD~lRl~ll~~ 665 (893)
+|||||++ .++..+. ...|-..+++-+++..
T Consensus 249 ~kLSKr~~-~~~~~~~~~~G~~~~al~~~~all 280 (472)
T COG0008 249 KKLSKRKG-AVSIGEYRVEGWLPPALPNLLALL 280 (472)
T ss_pred CeecCccC-ccccchhhhcCCCcHHHHHHHHHh
Confidence 79999999 5555542 3466677777666543
No 226
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=22.82 E-value=54 Score=26.19 Aligned_cols=32 Identities=16% Similarity=-0.081 Sum_probs=22.2
Q ss_pred cCCCCcccccchhccC---cccCCCcccEEEeece
Q psy2890 162 DPIEKTVLANEQVING---RGWRSDAIIEKKKIPM 193 (893)
Q Consensus 162 ~~~~~t~l~~~ev~~g---~c~~~~~~v~~~~~~~ 193 (893)
||.|+..+.=.+...| .|+.||+.++-+....
T Consensus 5 CP~CG~~iev~~~~~GeiV~Cp~CGaeleVv~~~p 39 (54)
T TIGR01206 5 CPDCGAEIELENPELGELVICDECGAELEVVSLDP 39 (54)
T ss_pred CCCCCCEEecCCCccCCEEeCCCCCCEEEEEeCCC
Confidence 8888886543332223 5999999998877655
No 227
>COG3770 MepA Murein endopeptidase [Cell envelope biogenesis, outer membrane]
Probab=22.46 E-value=35 Score=35.54 Aligned_cols=12 Identities=67% Similarity=1.276 Sum_probs=10.3
Q ss_pred ccccccCCccCe
Q psy2890 438 SRQRYWGTPIPI 449 (893)
Q Consensus 438 SRQr~WG~pIPi 449 (893)
||.||||+|==|
T Consensus 69 ~rnR~~GHP~mi 80 (284)
T COG3770 69 SRNRYWGHPDMI 80 (284)
T ss_pred ccccccCChHHH
Confidence 999999999544
No 228
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=22.29 E-value=82 Score=25.32 Aligned_cols=46 Identities=20% Similarity=0.203 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHcCCccccccccc--ccc-HHHHHHHHHcCCCHHHHHHH
Q psy2890 59 YTINDVMYRYMRMNGYNVLMPMGWD--AFG-MPAENAAILNNTSPAKWTYD 106 (893)
Q Consensus 59 ~~~~Di~~R~~r~~G~~V~~~~G~D--~~G-~pie~~a~~~g~~~~~~~~~ 106 (893)
.+++|+.+.+-+.. +|+.-.|+| |+| .+++.++.++|+++.++..+
T Consensus 3 ~tVgeiv~~~p~~a--~vf~~~gIDfCCgG~~~L~eA~~~~~ld~~~vl~~ 51 (56)
T PF04405_consen 3 QTVGEIVAEDPRAA--RVFRKYGIDFCCGGNRSLEEACEEKGLDPEEVLEE 51 (56)
T ss_pred CCHHHHHHHChHHH--HHHHHcCCcccCCCCchHHHHHHHcCCCHHHHHHH
Confidence 35667776665543 366666666 667 78888899999999886554
No 229
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=21.67 E-value=75 Score=37.92 Aligned_cols=50 Identities=14% Similarity=-0.000 Sum_probs=37.9
Q ss_pred cccccCCCCcc---------------Cccchhh-hhCchhHHHHHHhcCCCCCCcccChhhhhHHH
Q psy2890 634 EKMSKSKNNGI---------------DPQTQIN-TYGADSTRLFIIFSAPPEKNLEWSDIGIEGAY 683 (893)
Q Consensus 634 ~KMSKSkgN~i---------------~p~~ii~-~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~~ 683 (893)
.||||++.... +...+.. .|-++|+|=|++..|.-..+...+.+.++...
T Consensus 285 ~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~f~~~~G~sk~~~~i~~~~Le~~n 350 (574)
T PTZ00437 285 SLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFCELVGITRSMNVIQISMLENTL 350 (574)
T ss_pred ceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCCccceEeeHHHHHHHH
Confidence 79999998731 2222222 58999999999999887888888888887653
No 230
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=21.57 E-value=64 Score=30.01 Aligned_cols=55 Identities=4% Similarity=-0.130 Sum_probs=31.7
Q ss_pred CChhhHHHHHHHHHH---HHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcc
Q psy2890 131 CSPKYYKWNQWIFLK---MFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAI 185 (893)
Q Consensus 131 ~~~~~~~~v~~~f~~---L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~ 185 (893)
.+|+.-++...++.+ +-..-|.........||..|+...+-.+...-.||.||..
T Consensus 39 V~p~~L~f~f~~~~~~t~~egA~L~i~~~p~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~ 96 (114)
T PRK03681 39 VETSSLAFCFDLVCRGTVAEGCKLHLEEQEAECWCETCQQYVTLLTQRVRRCPQCHGD 96 (114)
T ss_pred cCHHHHHHHHHHHhCCCccCCCEEEEEeeCcEEEcccCCCeeecCCccCCcCcCcCCC
Confidence 456555554443321 1122233444577899999997665533333469999975
No 231
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=21.06 E-value=2e+02 Score=34.34 Aligned_cols=49 Identities=18% Similarity=0.076 Sum_probs=36.3
Q ss_pred cccccCCCC------cc---------Cccchhh-hhCchhHHHHHHhcCCCCCCcccChhhhhHH
Q psy2890 634 EKMSKSKNN------GI---------DPQTQIN-TYGADSTRLFIIFSAPPEKNLEWSDIGIEGA 682 (893)
Q Consensus 634 ~KMSKSkgN------~i---------~p~~ii~-~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~ 682 (893)
.||||+++. .| +...+.+ .|-++|+|=|++..|.-..+..++.+.+...
T Consensus 269 ~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi~nf~~~lG~s~~~~~i~~~~L~~~ 333 (554)
T PRK05347 269 TVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTKQDSVIDMSMLESC 333 (554)
T ss_pred CccccccchhccccCcccCccCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCCeecHHHHHHH
Confidence 799999964 12 2334443 5889999999999987777777777777654
No 232
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=20.79 E-value=1.1e+02 Score=39.26 Aligned_cols=47 Identities=17% Similarity=0.380 Sum_probs=30.2
Q ss_pred cccCCCCccceecCCcccccccccchhhhhcCCCccccCCChhhhhccCCceeeecchhhHHHHH
Q psy2890 488 VSCPKCNKLAFRETDTMDTFVDSSWYYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHL 552 (893)
Q Consensus 488 ~~c~~~g~~~~re~d~~D~WfdSsw~~~~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl 552 (893)
-.||+||.++.++-. ..||-.|+- |+.++. --.|+-..|-.|+..|.
T Consensus 940 K~CPkCg~pl~kDG~--------dIPFETFlG-------F~GDKV---PDIDLNFSGeYQ~~AH~ 986 (1444)
T COG2176 940 KDCPKCGTPLKKDGH--------DIPFETFLG-------FKGDKV---PDIDLNFSGEYQPKAHN 986 (1444)
T ss_pred CCCCcCCCccccCCC--------CCChhhhcC-------CCCCCC---CCccCcCCccccHHHHH
Confidence 689999999887754 234444421 122211 12688889999999894
Done!