Query psy2890
Match_columns 893
No_of_seqs 332 out of 2739
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 20:14:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2890.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2890hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4arc_A Leucine--tRNA ligase; l 100.0 1E-199 5E-204 1798.3 72.8 851 1-893 21-879 (880)
2 2v0c_A Aminoacyl-tRNA syntheta 100.0 1E-183 3E-188 1675.1 66.8 845 1-893 1-876 (878)
3 1gax_A Valrs, valyl-tRNA synth 100.0 6E-134 2E-138 1228.5 52.0 650 1-854 3-741 (862)
4 1ile_A Ilers, isoleucyl-tRNA s 100.0 1E-131 4E-136 1217.7 38.1 700 3-846 6-813 (821)
5 1ffy_A Isoleucyl-tRNA syntheta 100.0 5E-131 2E-135 1213.7 32.4 700 3-846 16-809 (917)
6 1wz2_A Leucyl-tRNA synthetase; 100.0 1E-118 4E-123 1114.8 39.8 692 3-842 2-843 (967)
7 1wkb_A Leucyl-tRNA synthetase; 100.0 1E-111 4E-116 1041.9 45.4 661 3-807 2-810 (810)
8 3u1f_A Methionyl-tRNA syntheta 100.0 2.8E-84 9.4E-89 767.3 36.6 464 35-808 8-499 (542)
9 1rqg_A Methionyl-tRNA syntheta 100.0 8.7E-82 3E-86 761.2 41.7 465 36-808 2-521 (722)
10 2x1l_A Methionyl-tRNA syntheta 100.0 6.6E-80 2.3E-84 726.1 39.2 459 34-808 10-491 (524)
11 3kfl_A Methionyl-tRNA syntheta 100.0 4.6E-79 1.6E-83 721.3 36.0 473 23-808 16-515 (564)
12 4dlp_A Aminoacyl-tRNA syntheta 100.0 9.3E-79 3.2E-83 716.9 37.7 458 35-808 24-498 (536)
13 2d5b_A Methionyl-tRNA syntheta 100.0 7.6E-79 2.6E-83 713.9 35.6 452 35-808 2-469 (500)
14 2csx_A Methionyl-tRNA syntheta 100.0 5E-78 1.7E-82 705.7 32.8 452 35-808 4-468 (497)
15 3h99_A Methionyl-tRNA syntheta 100.0 4.3E-78 1.5E-82 714.8 30.0 465 34-824 16-529 (560)
16 3c8z_A Cysteinyl-tRNA syntheta 100.0 3.2E-44 1.1E-48 408.0 26.8 116 36-157 40-156 (414)
17 3tqo_A Cysteinyl-tRNA syntheta 100.0 1.4E-44 4.7E-49 409.8 23.7 127 37-166 25-152 (462)
18 3sp1_A Cysteinyl-tRNA syntheta 100.0 1.6E-44 5.6E-49 410.4 18.2 123 40-165 45-177 (501)
19 1li5_A Cysrs, cysteinyl-tRNA s 100.0 1.4E-41 4.8E-46 390.0 22.3 125 35-165 22-148 (461)
20 3o0a_A Leucyl-tRNA synthetase 100.0 5.2E-38 1.8E-42 323.1 17.8 198 229-432 1-219 (219)
21 2ajg_A Leucyl-tRNA synthetase; 100.0 9.9E-36 3.4E-40 302.6 19.8 183 232-428 11-196 (196)
22 1wka_A Valyl-tRNA synthetase; 100.0 5.1E-32 1.7E-36 261.8 14.0 138 231-430 4-146 (147)
23 1wny_A Isoleucyl-tRNA syntheta 100.0 7E-33 2.4E-37 279.3 7.9 175 230-430 2-183 (186)
24 2wfd_A Leucyl-tRNA synthetase, 100.0 4.9E-29 1.7E-33 262.6 9.0 186 234-425 8-248 (252)
25 2wfg_A Cytosolic leucyl-tRNA s 99.9 9.7E-29 3.3E-33 261.1 7.2 172 254-430 32-252 (261)
26 3fnr_A Arginyl-tRNA synthetase 99.9 2.5E-25 8.6E-30 253.7 31.5 198 540-796 239-451 (464)
27 2zue_A Arginyl-tRNA synthetase 99.9 1.2E-25 4.1E-30 266.7 29.5 117 35-153 118-293 (629)
28 1iq0_A Arginyl-tRNA synthetase 99.9 4.5E-26 1.5E-30 269.7 21.4 115 37-154 104-264 (592)
29 3pz6_A Leurs, leucyl-tRNA synt 99.9 2.9E-26 1E-30 240.2 7.1 168 254-425 79-302 (311)
30 1irx_A Lysyl-tRNA synthetase; 99.9 2.9E-26 1E-30 268.2 5.2 114 37-154 20-152 (523)
31 1f7u_A Arginyl-tRNA synthetase 99.8 8.5E-19 2.9E-23 206.5 30.8 123 35-161 142-324 (607)
32 3aii_A Glutamyl-tRNA synthetas 99.1 8.7E-11 3E-15 134.6 11.0 94 39-154 97-190 (553)
33 1nzj_A Hypothetical protein YA 98.3 4.4E-07 1.5E-11 97.5 5.3 95 39-154 6-100 (298)
34 1qtq_A GLNRS, protein (glutami 98.2 2E-06 6.9E-11 98.7 7.2 95 39-154 27-121 (553)
35 2o5r_A Glutamyl-tRNA synthetas 98.1 3.9E-06 1.3E-10 96.1 7.4 97 37-153 12-115 (481)
36 4g6z_A Glutamate-tRNA ligase; 98.0 5.4E-06 1.8E-10 94.3 6.8 94 39-153 26-119 (490)
37 2hz7_A Glutaminyl-tRNA synthet 98.0 5.4E-06 1.8E-10 99.3 6.6 95 39-154 67-161 (851)
38 2cfo_A Glutamyl-tRNA synthetas 97.9 6.7E-06 2.3E-10 94.2 5.4 93 41-154 4-96 (492)
39 3al0_C Glutamyl-tRNA(Gln) amid 97.9 1.1E-05 3.9E-10 94.3 7.1 96 39-154 130-232 (592)
40 3afh_A Glutamyl-tRNA synthetas 97.7 5.2E-05 1.8E-09 86.7 8.4 95 39-153 26-127 (488)
41 4gri_A Glutamate--tRNA ligase; 97.7 4.3E-05 1.5E-09 88.4 6.8 94 40-153 26-126 (512)
42 1j09_A Glutamyl-tRNA synthetas 97.7 3.3E-05 1.1E-09 87.9 5.8 93 41-153 4-103 (468)
43 2ja2_A Glutamyl-tRNA synthetas 97.5 0.00011 3.6E-09 84.2 7.3 95 39-153 7-108 (498)
44 2cyb_A Tyrosyl-tRNA synthetase 96.9 0.004 1.4E-07 67.7 11.0 74 36-122 31-104 (323)
45 1qtq_A GLNRS, protein (glutami 95.5 0.0074 2.5E-07 69.3 4.2 52 634-685 266-333 (553)
46 1gax_A Valrs, valyl-tRNA synth 95.2 0.019 6.5E-07 70.4 6.6 79 137-229 316-395 (862)
47 2yxn_A Tyrosyl-tRNA synthetase 94.8 0.023 7.7E-07 61.6 5.1 72 537-664 191-262 (322)
48 1ile_A Ilers, isoleucyl-tRNA s 94.7 0.02 6.9E-07 70.2 5.1 78 137-229 361-439 (821)
49 1wkb_A Leucyl-tRNA synthetase; 94.7 0.013 4.3E-07 72.0 3.1 52 177-229 447-501 (810)
50 2g36_A Tryptophanyl-tRNA synth 94.3 0.24 8.1E-06 53.9 11.9 73 39-123 14-86 (340)
51 2cfo_A Glutamyl-tRNA synthetas 94.2 0.04 1.4E-06 63.0 5.7 32 634-666 246-278 (492)
52 1y42_X Tyrosyl-tRNA synthetase 94.2 0.063 2.2E-06 59.6 7.0 29 634-664 292-320 (392)
53 1ffy_A Isoleucyl-tRNA syntheta 94.2 0.022 7.5E-07 70.4 3.7 53 176-229 394-446 (917)
54 2ts1_A Tyrosyl-tRNA synthetase 94.1 0.027 9.4E-07 63.0 3.9 75 37-118 30-108 (419)
55 1jil_A Tyrrs, tyrosyl-tRNA syn 94.1 0.028 9.6E-07 63.0 3.9 75 37-118 32-110 (420)
56 2jan_A Tyrosyl-tRNA synthetase 94.0 0.033 1.1E-06 62.5 4.3 40 37-81 32-72 (432)
57 2pid_A Tyrosyl-tRNA synthetase 94.0 0.032 1.1E-06 61.2 4.1 72 537-664 210-281 (356)
58 2hz7_A Glutaminyl-tRNA synthet 94.0 0.035 1.2E-06 66.7 4.7 52 634-685 306-373 (851)
59 3tzl_A Tryptophanyl-tRNA synth 93.5 0.21 7.2E-06 53.9 9.4 63 47-122 12-74 (322)
60 1h3f_A Tyrosyl-tRNA synthetase 93.3 0.085 2.9E-06 59.3 6.1 71 537-665 187-257 (432)
61 1n3l_A Tyrosyl-tRNA synthetase 92.3 0.068 2.3E-06 59.0 3.5 40 37-81 35-74 (372)
62 1yi8_B Tryptophanyl-tRNA synth 92.1 0.16 5.6E-06 55.5 6.2 74 37-123 22-95 (351)
63 2dlc_X Tyrosyl-tRNA synthetase 91.7 0.099 3.4E-06 58.2 3.9 79 35-123 37-117 (394)
64 3tzl_A Tryptophanyl-tRNA synth 91.4 0.16 5.5E-06 54.8 5.2 27 634-665 191-217 (322)
65 2el7_A Tryptophanyl-tRNA synth 91.2 0.2 6.9E-06 54.4 5.7 67 47-123 10-77 (337)
66 2o5r_A Glutamyl-tRNA synthetas 91.1 0.22 7.4E-06 56.9 6.0 32 634-666 261-293 (481)
67 2cyb_A Tyrosyl-tRNA synthetase 90.9 0.39 1.3E-05 51.9 7.6 71 536-665 169-239 (323)
68 3vgj_A Tyrosyl-tRNA synthetase 90.7 0.28 9.5E-06 54.1 6.2 21 537-558 200-220 (373)
69 1wz2_A Leucyl-tRNA synthetase; 90.3 0.1 3.6E-06 64.9 2.7 53 176-229 446-501 (967)
70 2zp1_A Tyrosyl-tRNA synthetase 90.0 0.24 8.2E-06 53.3 4.9 73 36-121 27-99 (314)
71 2cya_A Tyrosyl-tRNA synthetase 89.6 0.4 1.4E-05 52.7 6.3 77 36-123 34-110 (364)
72 3hzr_A Tryptophanyl-tRNA synth 89.0 0.95 3.2E-05 49.9 8.7 77 35-123 80-156 (386)
73 2g36_A Tryptophanyl-tRNA synth 88.8 0.58 2E-05 50.8 6.9 27 634-665 204-230 (340)
74 2cya_A Tyrosyl-tRNA synthetase 88.8 0.3 1E-05 53.7 4.6 27 634-665 237-264 (364)
75 1i6k_A TRPRS, tryptophanyl-tRN 88.8 0.52 1.8E-05 51.0 6.4 64 47-123 10-73 (328)
76 3jxe_A Tryptophanyl-tRNA synth 88.8 0.74 2.5E-05 50.9 7.7 78 35-123 71-148 (392)
77 2zp1_A Tyrosyl-tRNA synthetase 88.5 0.49 1.7E-05 50.8 6.0 26 634-664 203-228 (314)
78 2yy5_A Tryptophanyl-tRNA synth 88.4 0.59 2E-05 51.0 6.5 72 38-123 5-76 (348)
79 2ja2_A Glutamyl-tRNA synthetas 87.4 1.2 4.1E-05 50.8 8.6 32 634-666 256-288 (498)
80 1j09_A Glutamyl-tRNA synthetas 87.4 0.59 2E-05 53.0 6.0 33 634-667 242-275 (468)
81 1n3l_A Tyrosyl-tRNA synthetase 87.1 0.72 2.5E-05 50.8 6.4 26 634-664 221-247 (372)
82 2dlc_X Tyrosyl-tRNA synthetase 87.1 0.7 2.4E-05 51.3 6.3 26 634-664 226-252 (394)
83 2j5b_A Tyrosyl-tRNA synthetase 87.0 0.53 1.8E-05 51.4 5.1 78 36-123 39-116 (348)
84 3a04_A Tryptophanyl-tRNA synth 87.0 1.1 3.6E-05 49.4 7.5 77 35-123 68-144 (372)
85 1i6k_A TRPRS, tryptophanyl-tRN 86.6 0.48 1.6E-05 51.2 4.5 24 536-560 136-159 (328)
86 3jxe_A Tryptophanyl-tRNA synth 86.5 0.51 1.8E-05 52.2 4.7 18 538-556 208-225 (392)
87 2el7_A Tryptophanyl-tRNA synth 86.3 0.74 2.5E-05 49.9 5.8 27 634-665 194-220 (337)
88 3tze_A Tryptophanyl-tRNA synth 86.1 0.61 2.1E-05 51.7 5.0 40 537-585 243-282 (406)
89 2ip1_A Tryptophanyl-tRNA synth 85.9 0.58 2E-05 52.4 4.8 40 537-585 249-288 (432)
90 3i05_A Tryptophanyl-tRNA synth 85.4 0.41 1.4E-05 53.0 3.3 77 35-123 76-153 (395)
91 3hv0_A Tryptophanyl-tRNA synth 85.3 2.2 7.6E-05 47.1 9.1 77 35-123 72-150 (393)
92 2j5b_A Tyrosyl-tRNA synthetase 84.5 1.2 4.1E-05 48.6 6.4 19 538-557 187-205 (348)
93 3afh_A Glutamyl-tRNA synthetas 84.3 0.84 2.9E-05 52.0 5.2 32 634-666 254-286 (488)
94 3hzr_A Tryptophanyl-tRNA synth 84.1 0.84 2.9E-05 50.3 4.9 26 634-664 268-294 (386)
95 3p0j_A Tyrosyl-tRNA synthetase 84.0 0.86 2.9E-05 54.2 5.3 46 36-87 39-85 (690)
96 3n9i_A Tryptophanyl-tRNA synth 83.2 1.4 4.9E-05 47.7 6.3 71 39-123 17-87 (346)
97 3al0_C Glutamyl-tRNA(Gln) amid 83.2 0.8 2.7E-05 53.5 4.5 32 634-666 358-390 (592)
98 3prh_A Tryptophanyl-tRNA synth 82.5 1.1 3.9E-05 49.3 5.2 74 36-123 30-107 (388)
99 3sz3_A Tryptophanyl-tRNA synth 82.3 1.1 3.9E-05 48.4 5.1 70 40-123 9-78 (341)
100 3foc_A Tryptophanyl-tRNA synth 82.3 0.74 2.5E-05 51.6 3.6 78 35-123 89-167 (451)
101 2cyc_A Tyrosyl-tRNA synthetase 82.2 0.91 3.1E-05 50.0 4.3 78 37-123 33-114 (375)
102 2ip1_A Tryptophanyl-tRNA synth 82.2 1.8 6.3E-05 48.4 6.8 79 35-123 100-178 (432)
103 3i05_A Tryptophanyl-tRNA synth 82.1 2.2 7.5E-05 47.2 7.3 25 634-663 269-293 (395)
104 3vgj_A Tyrosyl-tRNA synthetase 81.5 2.3 7.8E-05 46.7 7.1 76 37-123 56-132 (373)
105 3hv0_A Tryptophanyl-tRNA synth 80.9 0.95 3.2E-05 50.1 3.8 15 634-648 265-280 (393)
106 2yy5_A Tryptophanyl-tRNA synth 80.6 1.6 5.4E-05 47.6 5.4 24 536-560 146-169 (348)
107 1r6u_A Tryptophanyl-tRNA synth 80.4 2.6 9E-05 47.1 7.2 78 35-123 106-183 (437)
108 3foc_A Tryptophanyl-tRNA synth 79.0 4.7 0.00016 45.2 8.7 15 72-86 88-103 (451)
109 1r6t_A Tryptophanyl-tRNA synth 78.8 1.4 4.7E-05 50.1 4.3 15 634-648 348-363 (477)
110 2cyc_A Tyrosyl-tRNA synthetase 78.6 1.9 6.7E-05 47.3 5.4 26 634-664 250-276 (375)
111 3tze_A Tryptophanyl-tRNA synth 78.3 3.2 0.00011 46.0 7.0 77 35-123 99-176 (406)
112 1r6u_A Tryptophanyl-tRNA synth 78.0 1.5 5.1E-05 49.1 4.3 15 634-648 301-316 (437)
113 3p0j_A Tyrosyl-tRNA synthetase 77.3 4.2 0.00014 48.2 8.1 20 104-123 97-116 (690)
114 1y42_X Tyrosyl-tRNA synthetase 77.2 2.1 7.3E-05 47.3 5.2 75 37-119 64-143 (392)
115 3prh_A Tryptophanyl-tRNA synth 76.9 2.5 8.6E-05 46.5 5.6 25 536-561 170-194 (388)
116 1jil_A Tyrrs, tyrosyl-tRNA syn 76.8 3.5 0.00012 46.0 6.9 73 537-664 186-258 (420)
117 3sz3_A Tryptophanyl-tRNA synth 76.4 1.7 5.7E-05 47.1 4.0 25 537-562 143-167 (341)
118 1r6t_A Tryptophanyl-tRNA synth 76.3 3.7 0.00013 46.5 7.0 78 35-123 153-230 (477)
119 2ts1_A Tyrosyl-tRNA synthetase 75.4 3.6 0.00012 45.8 6.5 73 537-664 185-257 (419)
120 2yxn_A Tyrosyl-tRNA synthetase 75.2 4 0.00014 43.8 6.6 75 37-118 33-111 (322)
121 1yi8_B Tryptophanyl-tRNA synth 74.7 2.3 7.8E-05 46.3 4.5 26 634-664 214-239 (351)
122 1nzj_A Hypothetical protein YA 71.7 2.4 8.3E-05 45.0 3.8 10 634-643 227-236 (298)
123 3n9i_A Tryptophanyl-tRNA synth 68.9 3.2 0.00011 44.9 4.0 24 537-561 152-175 (346)
124 4ayb_P DNA-directed RNA polyme 61.6 4.5 0.00015 29.8 2.2 32 159-190 3-37 (48)
125 1h3f_A Tyrosyl-tRNA synthetase 54.7 7.4 0.00025 43.5 3.7 46 36-87 36-82 (432)
126 3a04_A Tryptophanyl-tRNA synth 54.5 7.9 0.00027 42.4 3.9 19 540-559 211-229 (372)
127 4g6z_A Glutamate-tRNA ligase; 53.5 20 0.0007 40.5 7.1 32 634-666 263-295 (490)
128 1lko_A Rubrerythrin all-iron(I 53.4 15 0.00051 36.1 5.3 54 132-186 128-181 (191)
129 2pid_A Tyrosyl-tRNA synthetase 53.0 7.4 0.00025 42.4 3.3 75 37-118 46-124 (356)
130 2jan_A Tyrosyl-tRNA synthetase 49.7 9.6 0.00033 42.5 3.6 72 537-664 187-259 (432)
131 2kdx_A HYPA, hydrogenase/ureas 43.4 25 0.00086 31.6 4.8 56 131-187 38-101 (119)
132 3a43_A HYPD, hydrogenase nicke 33.7 41 0.0014 31.1 4.6 83 104-187 7-118 (139)
133 3pwf_A Rubrerythrin; non heme 25.2 63 0.0022 30.9 4.4 51 132-186 113-163 (170)
134 2jne_A Hypothetical protein YF 25.1 27 0.00092 30.0 1.5 45 147-191 20-76 (101)
135 2lcq_A Putative toxin VAPC6; P 24.0 35 0.0012 32.4 2.4 37 152-189 125-161 (165)
136 1s24_A Rubredoxin 2; electron 23.5 1.1E+02 0.0036 25.9 4.9 47 443-495 29-76 (87)
137 8tfv_A Protein (thanatin); bac 21.8 29 0.001 20.2 0.8 9 445-453 4-12 (21)
138 2k53_A A3DK08 protein; NESG, C 20.6 40 0.0014 27.7 1.7 50 59-110 7-62 (76)
139 2k5e_A Uncharacterized protein 20.5 38 0.0013 27.6 1.5 49 59-109 9-63 (73)
140 1twf_L ABC10-alpha, DNA-direct 20.0 43 0.0015 27.1 1.7 36 156-191 25-60 (70)
No 1
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=100.00 E-value=1.4e-199 Score=1798.34 Aligned_cols=851 Identities=44% Similarity=0.809 Sum_probs=756.9
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCcccCCCCCCCCCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCcccccc
Q psy2890 1 MQKKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPM 80 (893)
Q Consensus 1 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~ 80 (893)
|.++|||.+||++||++|+++++|++..+.+ +++|||++|||||||.|||||+++++++|+++||+||+||+|++++
T Consensus 21 m~~~y~~~~iE~kw~~~W~~~~~f~~~~~~~---~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~ 97 (880)
T 4arc_A 21 MQEQYRPEEIESKVQLHWDEKRTFEVTEDES---KEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPI 97 (880)
T ss_dssp CCSSCCHHHHHHHHHHHHHHTTTTCCCCCTT---SCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCC
T ss_pred ccccCChHHHHHHHHHHHHhcCCcccCCcCC---CCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEec
Confidence 7789999999999999999999999876544 7899999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeee
Q psy2890 81 GWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVN 160 (893)
Q Consensus 81 G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~ 160 (893)
||||||+|||++|+++|++|.+|+.++++.|+++|++||+++||+++++|+++.|+++++++|.+|+++|+||++.++|+
T Consensus 98 G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~~~~~v~ 177 (880)
T 4arc_A 98 GWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVN 177 (880)
T ss_dssp EECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEEEEECC-
T ss_pred CccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEEeceeEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHHHHhhcccccceeeeecc
Q psy2890 161 WDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIGKSKGIFLAFPH 240 (893)
Q Consensus 161 ~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~wi~~s~~~~i~f~~ 240 (893)
|||.|+|+||++||++|+|++||++||+++++||||+|++|+++|++++ +.+++||++++.||+||||||+|++|+|++
T Consensus 178 wcp~~~t~La~~ev~~g~~~~~g~~ve~~~~~~~f~~i~~y~~~Ll~~l-~~~~~wp~~v~~~~~~wig~s~g~~v~f~~ 256 (880)
T 4arc_A 178 WCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDL-DKLDHWPDTVKTMQRNWIGRSEGVEITFNV 256 (880)
T ss_dssp -----------------------------CEEEEEECGGGGHHHHHHHG-GGCTTSCHHHHHHHHHHHCEEEEEEEEEEE
T ss_pred ecCCcCCEecchhhhcCcCcCCCCccEEEEccceEEeechhHHHHHHHH-hhcccccHHHHHHHHhhhccccceEEEEEe
Confidence 9999999999999999999999999999999999999999999999999 889899999999999999999999999999
Q ss_pred ccCCCCCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhchHHHHHHHHHHhhcCcccc--ccccccccccc
Q psy2890 241 NIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYKKNNNIES--NNLLKKSILTQ 318 (893)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~g 318 (893)
.+. +.+|+|||||||||+|++||||||+|+|+..++..+..+.+|+++++..+..++ ...+++|.++|
T Consensus 257 ~~~----------~~~i~v~TTrP~Tl~g~t~vav~Pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 326 (880)
T 4arc_A 257 NDY----------DNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATMEKKGVDTG 326 (880)
T ss_dssp TTC----------SSEEEEEESCGGGGGGCCEEEECTTCHHHHHHGGGCHHHHHHHTC----------------CEEEEE
T ss_pred cCC----------CceEEEEeCCchhhcCCeEEEECCCcHHHHHHhcChHHHHHHHHHHhccCchhhhhccceeeccccC
Confidence 732 468999999999999999999999999999998877788888887776554443 23468899999
Q ss_pred eEEEcCCCCCeeeEEEecccccCCCCCcc-ccCCCCCHHHHHHHHHcCCceeeeecCCCCCccccccccccccCCccccc
Q psy2890 319 LKVLHPLTNQEIKVFVVNYVIEKSYGRAA-IGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCI 397 (893)
Q Consensus 319 ~~~~~P~~~~~ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~ 397 (893)
++++||++|+++||++++||+ +++|||| |+|||||++||+||++||||+++||++.+|...++. .++|+++|+ |+
T Consensus 327 ~~~~~P~~~~~ipi~~~~yV~-~~~GTGaV~~~Pahd~~D~~~~~~~~Lpi~~vi~~~~~~~~~~~-~~~~~~~g~--~~ 402 (880)
T 4arc_A 327 FKAVHPLTGEEIPVWAANFVL-MEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLS-QQALTEKGV--LF 402 (880)
T ss_dssp EEEECTTTCCEEEEEEETTSC-SSSTTSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSCCCCCS-SSCCCSCCC--BC
T ss_pred cEEecCCCCCEeEEEEeCccc-cCCCCceEEEccCCCHHHHHHHHHcCCCceEeeccCcccccccc-cccccCCce--ee
Confidence 999999999999999999999 9999999 999999999999999999999999986444222222 568999999 99
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHcCCCCeeeEeeecceeeccccccCCccCeEEcCCCCeeecCCCCCCccCCCccCC--
Q psy2890 398 NSCKYNNMSHKEATNAISTDLIKLGLGNKKNIFRLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVP-- 475 (893)
Q Consensus 398 ~s~~~~gl~~~~a~~~i~~~L~~~~~~~~~~~~~l~DW~ISRQr~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~-- 475 (893)
|||+|+||++.+|+++|++.|++.|+++++++|||||||||||||||+|||+|||++||.++|++++||+.||+++.+
T Consensus 403 ns~~~~Gl~~~eA~~~ii~~L~~~g~~~~~v~yrlrDW~iSRQRyWG~PIPi~~c~~cg~v~v~~~~Lpv~lp~~~~~~~ 482 (880)
T 4arc_A 403 NSGEFNGLDHEAAFNAIADKLTAMGVGERKVNYRLRDWGVSRQRYWGAPIPMVTLEDGTVMPTPDDQLPVILPEDVVMDG 482 (880)
T ss_dssp SSGGGTTCCHHHHHHHHHHHHHHTTSEEEEEEESCCCEECEESCSSSCBCCEEEETTSCEEECCGGGCSCCCCSSCCCCS
T ss_pred cCcccCCCCHHHHHHHHHHHHHHcCCcceeEEEEcccceeeeeeccCCcceEEEECCCCeEeCChHHCccccchhcccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred -CCcccccccccccccCCCCccceecCCcccccccccchhhhhcCCCccccCCChhhhhccCCceeeecchhhHHHHHHH
Q psy2890 476 -NNLLKENKKFLHVSCPKCNKLAFRETDTMDTFVDSSWYYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLY 554 (893)
Q Consensus 476 -g~~l~~~~~~~~~~c~~~g~~~~re~d~~D~WfdSsw~~~~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y 554 (893)
|+||..+++|++++|| |+.++||+|||||||||||||+||++|++++.+|+++++++|+|+|+|+||+||||+||||
T Consensus 483 ~g~pl~~~~~w~~~~cp--g~~~~retDtmDtw~dSswy~~r~~~p~~~~~~~~~~~~~~~~PvD~yigG~EHailHlly 560 (880)
T 4arc_A 483 ITSPIKADPEWAKTTVN--GMPALRETDTFDTFMESSWYYARYTCPQYKEGMLDSEAANYWLPVDIYIGGIEHAIMHLLY 560 (880)
T ss_dssp SSCHHHHSTTTTEEESS--SSEEEECCCEECTTTGGGTHHHHTTSTTCCSSSCCHHHHHHHCSEEEEECCGGGTTTHHHH
T ss_pred CCCchHhCccceeeccC--CCcceeCCCcCCCcccCcHHHHhhcCCCccccccChHHHhccCCceEeecchhhHHHHHHH
Confidence 7999999999999999 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceecccc
Q psy2890 555 ARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIE 634 (893)
Q Consensus 555 ~rf~~~~l~~~g~~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~ 634 (893)
+|||+++|+++|++.+++||++|++||||++++|+++| .+|++.|++|++|++.++++|+.+.+. ..+|+++.+++++
T Consensus 561 aRf~~~~L~~~g~~~~~ePFk~ll~qGmVl~~~~~~~d-~~G~~~~~~~~~v~~~~~~~~~~~~~~-~~~G~~v~~~~~e 638 (880)
T 4arc_A 561 FRFFHKLMRDAGMVNSDEPAKQLLCQGMVLADAFYYVG-ENGERNWVSPVDAIVERDEKGRIVKAK-DAAGHELVYTGMS 638 (880)
T ss_dssp HHHHHHHHHHTTSCCCSCSEEEEECCCCEEEEEEEEEC-TTSCEEEECSTTCEEEECTTCCEEEEE-CTTCCBCEEEEEE
T ss_pred HHHHHHHHHHhhcccCCCChHHeEEeceEeecceeccc-cCCcccccCHHHhcccccccccccccc-ccCCccccccccc
Confidence 99999999999999999999999999999999985557 899999999999999999999877764 4899999999999
Q ss_pred ccccCCCCccCccchhhhhCchhHHHHHHhcCCCCCCcccChhhhhHHHHHHHHHHHHHHhhhhccccccccccccCCcc
Q psy2890 635 KMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHNDFS 714 (893)
Q Consensus 635 KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~~~~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~ 714 (893)
|||||+||+|+|.++|++||||++|||+|+++++++|++|+++.++++++|++|+||++.++.. .+..... .
T Consensus 639 KMSKSkGNvVdP~diIekYGADalRl~ll~~~~~~~dl~~s~~~ie~a~rfl~rlwn~~~~~~~-~~~~~~~-------~ 710 (880)
T 4arc_A 639 KMSKSKNNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVYEHTA-KGDVAAL-------N 710 (880)
T ss_dssp ECCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHH-TCCCCCC-------C
T ss_pred cccCcCCCCCCHHHHHHHcCchHHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHh-ccccccc-------c
Confidence 9999999999999999999999999999999999999999999999999999999999988764 1111111 2
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhcccccCCCCCcccHHHHHHHHHHHHHHhcc
Q psy2890 715 VIKFNNNQKVFRRKIHKILQQINRDIK-RIQYNTVVSGCMKIFNILERINSETKFDNNKNTNNDILLYEGMSIFLRVLNP 793 (893)
Q Consensus 715 ~~~~~~~D~~il~~l~~~i~~v~~~~e-~~~f~~ai~~l~~fvn~l~~~~k~~~~~~~~~~~~~~~l~~~l~~ll~LL~P 793 (893)
...++..|+|+++++++++++|+++|+ +|+|++|++.+|+|+|.++++.+ +...++.+++++++.+++||+|
T Consensus 711 ~~~l~~~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~l~efvn~l~k~~~-------~~~~~~~~l~~~l~~ll~LLaP 783 (880)
T 4arc_A 711 VDALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELMNKLAKAPT-------DGEQDRALMQEALLAVVRMLNP 783 (880)
T ss_dssp STTCCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSCC-------SSHHHHHHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHhhhc-------cchHHHHHHHHHHHHHHHHHhh
Confidence 234678899999999999999999998 89999999999999999988632 1234577899999999999999
Q ss_pred cccchHHHHHHHhhccCCCCCeeeccCCCCChhhhhhHHHHHHHHHHhhhhcceEEEecCCCCHHHHHHHHhhChhHHHH
Q psy2890 794 IAPHITHILWKELKYSIQQGDILNACWPKIDSLALEEEKEEVKLIIQINGKFRGHIFVKKKCTTDFIKKIVLKNKVIQKY 873 (893)
Q Consensus 794 ~~P~isEEIwq~L~~~~~~~sI~~~~wP~~d~~~~~~~~~~~~~vv~i~gk~R~~~~v~~~~~~e~i~~~~~~~~~v~k~ 873 (893)
||||+|||||+.|+. .+||+.++||++|++++. ++.++++||||||+|++++||+++++++++++|++++.++++
T Consensus 784 f~PhiaEElW~~Lg~---~~sv~~~~wP~~d~~~l~--~~~~~~~vqvngk~r~~~~v~~~~~~~~~~~~~~~~~~~~~~ 858 (880)
T 4arc_A 784 FTPHICFTLWQELKG---EGDIDNAPWPVADEKAMV--EDSTLVVVQVNGKVRAKITVPVDATEEQVRERAGQEHLVAKY 858 (880)
T ss_dssp TSHHHHHHHHHHTTC---SSCGGGSCCCCCCHHHHC--CSEEEEEEEETTEEEEEEEEETTCCHHHHHHHHHHCHHHHTT
T ss_pred ccHHHHHHHHHHcCC---CCeEEeCCCCCCCHHHhc--cCceEEEEEEecceEEEEEcCCCCCHHHHHHHHhcCHHHHHH
Confidence 999999999999997 689999999999999887 778899999999999999999999999999999999999999
Q ss_pred hcC-CCEEEEEeCCCeEEEeC
Q psy2890 874 IIH-PPKKFFIIPNKLVNIII 893 (893)
Q Consensus 874 l~~-~i~kvi~vp~klvn~v~ 893 (893)
|.| +|+|+||||+||||||+
T Consensus 859 ~~~~~~~k~i~v~~k~vn~v~ 879 (880)
T 4arc_A 859 LDGVTVRKVIYVPGKLLNLVV 879 (880)
T ss_dssp TTTCCCCEEEEETTTEEEEEC
T ss_pred hCCCCceEEEEECCCEEEEEe
Confidence 999 99999999999999996
No 2
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=100.00 E-value=9.6e-184 Score=1675.11 Aligned_cols=845 Identities=39% Similarity=0.723 Sum_probs=702.5
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCcccCC-CCCCCCCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccc
Q psy2890 1 MQKKYNFVEIEKITQCYWNKINAYQTTE-NDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMP 79 (893)
Q Consensus 1 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~-~~~~~~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~ 79 (893)
|. +|||.++|++||++|+++++|+... +.+ +++||+++|||||||.|||||+++++++|+++||+||+||+|+++
T Consensus 1 ~~-~y~~~~iE~kw~~~W~~~~~f~~~~~~~~---~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~ 76 (878)
T 2v0c_A 1 ME-KYNPHAIEAKWQRFWEEKGFMKAKDLPGG---RGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHP 76 (878)
T ss_dssp CC-CCCCTTHHHHHHHHHHHHTTTCCCSCCC------EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECC
T ss_pred CC-CCCHHHHHHHHHHHHHHcCCcccCcccCC---CCCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEee
Confidence 54 7999999999999999999999876 433 788999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceee
Q psy2890 80 MGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIV 159 (893)
Q Consensus 80 ~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v 159 (893)
+||||||+|||.+|+++|++|.+|++++++.|+++|++||+++||+++++|+++.|+++++++|.+|+++|+||++.++|
T Consensus 77 ~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~~~~~v 156 (878)
T 2v0c_A 77 MGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLV 156 (878)
T ss_dssp CCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred cccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEEcceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCcccccchhccCcccC-CCcccEEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHHHHhhcccccceeeee
Q psy2890 160 NWDPIEKTVLANEQVINGRGWR-SDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIGKSKGIFLAF 238 (893)
Q Consensus 160 ~~~~~~~t~l~~~ev~~g~c~~-~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~wi~~s~~~~i~f 238 (893)
+|||.|+|+|||+||++|+|++ ||++++.++++||||+|++|+++|++++ +.++ ||++++.||+||||+|.|++|+|
T Consensus 157 ~w~p~~~t~La~~ev~~g~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l-~~~~-~p~~~~~~~~~wi~~s~g~~v~f 234 (878)
T 2v0c_A 157 NWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDL-EGLN-WPEKVKAMQRAWIGRSEGAEILF 234 (878)
T ss_dssp EEETTTTEEECGGGEETTEESSCTTCBCEEEEEEEEEECGGGGHHHHHHTT-TTCB-SCHHHHHHHHHHHCEEEEEEEEE
T ss_pred EEeCCCCCCcCHHHHhcCCCcccCCCceEEEecceeeEecchhHHHHHHHh-hhcC-CCHHHHHHHHHHhccccCceEEE
Confidence 9999999999999999999999 9999999999999999999999999999 7776 99999999999999999999999
Q ss_pred ccccCCCCCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHh--hchHHHHHHHHHHhhcCcccc--ccccccc
Q psy2890 239 PHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAA--RNNLLLQKFILEYKKNNNIES--NNLLKKS 314 (893)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~g 314 (893)
++.+. +.+|+|||||||||||++||||||+|+|+..+. .....+.+|+++++.....++ ...++.|
T Consensus 235 ~~~~~----------~~~l~v~TTrP~Tl~g~~~vav~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 304 (878)
T 2v0c_A 235 PVEGK----------EVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQAEGREKTG 304 (878)
T ss_dssp EBTTS----------SCEEEEEESCGGGGGGCCEEEECTTSHHHHHHSCGGGHHHHHHHHHHHHTSCHHHHHCSSSCCCC
T ss_pred EecCC----------CceEEEEeCCchhhhCcEEEEEcCCCeeeehhccchhHHHHHHHHHHHhhhhhhhhhhccceeee
Confidence 99732 478999999999999999999999999998874 345567888888776554433 2457889
Q ss_pred cccceEEEcCCCCCeeeEEEecccccCCCCCcc-ccCCCCCHHHHHHHHHcCCceeeeecCCCCCc-c-ccccccccccC
Q psy2890 315 ILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAA-IGVPAHNKHDFYFAKKHSLLIKQVINVKNKSY-S-DKIWKDWYIDK 391 (893)
Q Consensus 315 ~~~g~~~~~P~~~~~ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~-~-~~~~~~~~~~~ 391 (893)
.++|+++.||++|+++||++++||+ +++|||| |+|||||++||+||++||||++++|++ +|.. . ++ .++|+++
T Consensus 305 ~~~g~~~~~P~~~~~ipi~~~~~V~-~~~GTG~V~~~PaHd~~D~~~~~k~~L~i~~vi~~-~~~~~~~~~--~~~~~~~ 380 (878)
T 2v0c_A 305 VFLGAYALNPATGERIPIWTADYVL-FGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIER-PGEPLPEPL--ERAYEEP 380 (878)
T ss_dssp EEEEEEEECTTTCCEEEEEECTTSC-TTSTTSEEEECTTTCHHHHHHHHHHTCCCCCCEEC-SSSCCCSSC--SSCCCSC
T ss_pred EecCcEEECCCCCCEeEEEEeCccc-CCCCCceEEeCCCCCHHHHHHHHHcCCCceeeeCC-CCccccccc--cccccCC
Confidence 9999999999999999999999999 9999999 999999999999999999999999986 3310 0 11 4588889
Q ss_pred CccccccCCCCCCCCHHHHHHHHHHHHHHcCCCCeeeEeeecceeeccccccCCccCeEEcCCCCeeecCCCCCCccCCC
Q psy2890 392 ENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNKKNIFRLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPE 471 (893)
Q Consensus 392 g~~~~~~s~~~~gl~~~~a~~~i~~~L~~~~~~~~~~~~~l~DW~ISRQr~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~ 471 (893)
|+ |+|+|.|+||++.+|+++|++.|++.|+++++++|||||||||||||||+|||+|||++||.+++++++||+.||+
T Consensus 381 g~--~~ns~~~~Gl~~~eA~~~Ii~~L~~~g~~~~~v~~rlrDW~ISRQR~WG~PIPi~~~~~~~~v~v~~~~lpv~lp~ 458 (878)
T 2v0c_A 381 GI--MVNSGPFDGTESEEGKRKVIAWLEEKGLGKGRVTYRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPD 458 (878)
T ss_dssp CE--ECSSGGGTTCBHHHHHHHHHHHHHHHTSEEEEEEESCCCEECEESCSSSEECCEEEETTTEEEECCGGGCCCCCCC
T ss_pred ee--EecCCCCCCcCHHHHHHHHHHHHHHCCCCCCceEEecccchhhcccccCCcccEEEECCCCeEecCHHHccccccc
Confidence 99 9999999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred --ccC-C----CCcccccccccccccCCCCccceecCCcccccccccchhhhhcCCCccccCCChhhhhccCCceeeecc
Q psy2890 472 --TCV-P----NNLLKENKKFLHVSCPKCNKLAFRETDTMDTFVDSSWYYMRYISPKLENFMIDDNKINYWMPVDQYIGG 544 (893)
Q Consensus 472 --~~~-~----g~~l~~~~~~~~~~c~~~g~~~~re~d~~D~WfdSsw~~~~~~~p~~~~~~~~~~~~~~~~PvD~~igG 544 (893)
++. + ++|+..+++|++++||+||+.++||+|||||||||||||++|++|+++..+|+++++++|+|+|+|+||
T Consensus 459 ~~~~~~~~~~g~~pl~~~~~~~~~~cp~cg~~~~retDtmDtwfdSsw~~~~~~~p~~~~~~~~~~~~~~~~P~D~yi~G 538 (878)
T 2v0c_A 459 LKDVEDIRPKGKSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGG 538 (878)
T ss_dssp CCCHHHHSCSSSCGGGGCHHHHEEECTTTCSEEEECCCEECHHHHHTSHHHHTTSTTCSSSSCCHHHHHHHCSBSEEECC
T ss_pred hhhhhccccCCCChhhhhHhhcCCcCCCCCCcceeccccccccccccchhhhccCccccccccCHHHHccCCCCeEEEec
Confidence 432 2 478988999999999999999999999999999999999999999998899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCccCCCccceeeecceEeceeeeecccCCCC-ccccC------------CCccccccc
Q psy2890 545 IEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNK-KRWYN------------PDDVKITLD 611 (893)
Q Consensus 545 ~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~-~~~~~------------~~~v~~~~~ 611 (893)
+||+|+||||+|||+++|.++|++.+++||++|++||||++++|+..+ +|+ ..|++ |++|.+..+
T Consensus 539 ~d~~ilhl~y~r~~~~~l~~~g~~~~~~Pfk~l~~~G~vl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (878)
T 2v0c_A 539 VEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPV--EVEGSVVRLPEPTRIRLEIPESALSLEDVR 616 (878)
T ss_dssp GGGTTTHHHHHHHHHHHHHHTTSCSCSCSBSBEECCCCEEEEEEEEEE--EEETTEEECCHHHHHHHTCSCSEEEHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcccCCCchHhheecceEeccceeccc--cccccceeccccccccccccCchhhhhccc
Confidence 999999999999999999999999999999999999999999888422 332 22555 777776554
Q ss_pred CCCCccceeeecCCCcceeccccccccCCCCccCccchhhhhCchhHHHHHHhcCCCCCCcccChhhhhHHHHHHHHHHH
Q psy2890 612 KKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWN 691 (893)
Q Consensus 612 ~~g~~~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~~~~l~rl~n 691 (893)
+.+.+ ...+.+|+++. ++++|||||+||+|+|.++|++||||++|||+|+.+++++|++|+++.++++.+|++|+||
T Consensus 617 ~~~~~--~~~~~~G~~~~-~~~~KMSKSkGNvVdP~diI~~yGADalRl~ll~~~~~~~D~~fs~~~v~~~~~~l~Rl~n 693 (878)
T 2v0c_A 617 KMGAE--LRPHEDGTLHL-WKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRIYR 693 (878)
T ss_dssp HTTCE--EEECTTSSEEE-EEEEECSGGGTCCCBHHHHHHHSCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred cccce--eeccCCCCchh-hhHHHhhccCCCcccHHHHHHHcCccHHHHHHhccCCCCCCceeCHHHHHHHHHHHHHHHH
Confidence 43321 00124676655 6779999999999999999999999999999999899999999999999999999999999
Q ss_pred HHHhhhhccc-cccccccccCCccccCCChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccccCC
Q psy2890 692 FSYILAPRII-NIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIFNILERINSETKFDN 770 (893)
Q Consensus 692 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fvn~l~~~~k~~~~~~ 770 (893)
++.+....+. ....+ ....++..|+|+++++++++++|+++|++|+|++|++.+|+|++.++++... +
T Consensus 694 ~~~~~~~~~~~~~~~~-------~~~~l~~~D~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~l~~f~~~l~k~~~~----~ 762 (878)
T 2v0c_A 694 RVAEDREALLETSGVF-------QAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYEYRKD----R 762 (878)
T ss_dssp HHHHHHHHHHTCCCCC-------CGGGCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH----C
T ss_pred HHHHHHhccccccccc-------CcccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhhhccc----c
Confidence 9987654211 00111 2234578899999999999999999999999999999999999999988532 1
Q ss_pred CCCcccHHHHHHHHHHHHHHhcccccchHHHHHHHhhccCCCCCeeeccCCCCChhhhhhHHHHHHHHHHhhhhcceEEE
Q psy2890 771 NKNTNNDILLYEGMSIFLRVLNPIAPHITHILWKELKYSIQQGDILNACWPKIDSLALEEEKEEVKLIIQINGKFRGHIF 850 (893)
Q Consensus 771 ~~~~~~~~~l~~~l~~ll~LL~P~~P~isEEIwq~L~~~~~~~sI~~~~wP~~d~~~~~~~~~~~~~vv~i~gk~R~~~~ 850 (893)
....+++++++.+++||+|||||+|||||+.|+ ++||+.++||++++..+. ++.+++++|||||+|++++
T Consensus 763 ----~~~~~l~~~l~~l~~LLaPf~P~~aEElw~~Lg----~~sv~~~~wP~~d~~~l~--~~~~~~~vqvngkvR~~i~ 832 (878)
T 2v0c_A 763 ----PVTPVYRTAIRYYLQMLFPFAPHLAEELWHWFW----PDSLFEAGWPELDEKALE--KDVVEVAVQVNGAVAGTIH 832 (878)
T ss_dssp ----CSCHHHHHHHHHHHHHHTTTSHHHHHHHHHHHC----SSCGGGSCCCCCCGGGGC---------------------
T ss_pred ----hhHHHHHHHHHHHHHHHcccchHHHHHHHHHcC----CCceeecCCCCCCHHHHH--HHHHHHHHhhHHHHHHHcc
Confidence 112789999999999999999999999999997 479999999999998877 7889999999999999999
Q ss_pred ecCCCCHHHHHHHHhhChhHHHHhcC-CCEEEEEeCCCeEEEeC
Q psy2890 851 VKKKCTTDFIKKIVLKNKVIQKYIIH-PPKKFFIIPNKLVNIII 893 (893)
Q Consensus 851 v~~~~~~e~i~~~~~~~~~v~k~l~~-~i~kvi~vp~klvn~v~ 893 (893)
+++++++++++++|++++.++++|.| +|+|+||||+||||||+
T Consensus 833 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~v~~~~vn~v~ 876 (878)
T 2v0c_A 833 IPKDAPLEVARAEALKVRNVRAHLEGKEVVKEIYVPGKILNLVV 876 (878)
T ss_dssp --------------------------------------------
T ss_pred cCcCCCHHHHHHHHhcCHHHHHHhCCCCcEEEEEECCCEEEEEe
Confidence 99999999999999999999999999 99999999999999996
No 3
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=6.2e-134 Score=1228.53 Aligned_cols=650 Identities=23% Similarity=0.371 Sum_probs=555.1
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCcccCCCCCCCCCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCcccccc
Q psy2890 1 MQKKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPM 80 (893)
Q Consensus 1 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~ 80 (893)
|.+.|||.++|++||++|++ ++|++..+.+ +++|+|++|||||||.|||||+++++++|+++||+||+||+|++++
T Consensus 3 ~~~~y~~~~~E~~~~~~W~~-~~f~~~~~~~---~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~ 78 (862)
T 1gax_A 3 LPKAYDPKSVEPKWAEKWAK-NPFVANPKSG---KPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLP 78 (862)
T ss_dssp CCSSCCGGGTHHHHHHHHHH-SCCCCCTTCC---SCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEEC
T ss_pred CccCCChHHHHHHHHHHHHh-CCCccCcCCC---CCcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCcccccc
Confidence 56789999999999999999 9999876544 7899999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHH----cCCC------------HHHHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHHH
Q psy2890 81 GWDAFGMPAENAAIL----NNTS------------PAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFL 144 (893)
Q Consensus 81 G~D~~G~pie~~a~~----~g~~------------~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~ 144 (893)
||||||+|+|.++++ .|++ |++|++++++.|++||++||+++||+++++|+|+.|+++++++|.
T Consensus 79 G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~ 158 (862)
T 1gax_A 79 GTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFS 158 (862)
T ss_dssp EEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHH
Confidence 999999999998874 3554 458999999999999999999999999999999999999999999
Q ss_pred HHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHHH
Q psy2890 145 KMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQ 224 (893)
Q Consensus 145 ~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~ 224 (893)
+|+++|+||++.++|+|||.|+|+|||.||. +++..
T Consensus 159 ~L~~kGliYrg~~~v~wcp~~~T~Lsd~EV~------------~~e~~-------------------------------- 194 (862)
T 1gax_A 159 RYYHEGLAYRAPRLVNWCPRCETTLSDLEVE------------TEPTP-------------------------------- 194 (862)
T ss_dssp HHHTTSSEEEECCEEEEETTTTEEECGGGEE------------ECCEE--------------------------------
T ss_pred HHHHCCCEEecccccccCCCcCccccccccc------------ccccc--------------------------------
Confidence 9999999999999999999999999998764 33322
Q ss_pred HhhcccccceeeeeccccCCCCCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhchHHHHHHHHHHhhcCc
Q psy2890 225 VNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYKKNNN 304 (893)
Q Consensus 225 ~~wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (893)
+.+++|+|++.+ +.+|+|||||||||+|++||||||+++++.
T Consensus 195 ------g~~~~v~f~~~~-----------~~~l~v~TTrPeTl~g~~avav~P~~~ry~--------------------- 236 (862)
T 1gax_A 195 ------GKLYTLRYEVEG-----------GGFIEIATVRPETVFADQAIAVHPEDERYR--------------------- 236 (862)
T ss_dssp ------EEEEEEECCCSS-----------SCCCEEEESCSGGGTTCCCEEECSSCCTTC---------------------
T ss_pred ------ceEEEEEEEecC-----------CCEEEEEeCCccccccceEEEECCCccHHH---------------------
Confidence 245789999873 258999999999999999999999997531
Q ss_pred cccccccccccccceEEEcCCCCCeeeEEEecccccCCCCCcc-ccCCCCCHHHHHHHHHcCCceeeeecCCCCCccccc
Q psy2890 305 IESNNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAA-IGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKI 383 (893)
Q Consensus 305 ~~~~~~~~~g~~~g~~~~~P~~~~~ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~ 383 (893)
.+.|+++.||++|+++||+.++||+ +++|||+ |++||||++||+++++||||+++++++ +|.
T Consensus 237 ----------~l~G~~~~~P~~~~~ipii~~~~V~-~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~-~G~----- 299 (862)
T 1gax_A 237 ----------HLLGKRARIPLTEVWIPILADPAVE-KDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINL-EGR----- 299 (862)
T ss_dssp ----------SCTTCCCBCTTCCCBCCEEECTTCC-TTSSSSEEECCGGGCHHHHHHHHHTTCCCCCSBCT-TSB-----
T ss_pred ----------HHcCCEEECCCCCCeeeEEeccccc-cCCCCcceEecCCCCchHHHHHHHcCCCccceeCC-CCc-----
Confidence 2589999999999999999999999 9999999 999999999999999999999999987 553
Q ss_pred cccccccCCccccc-cC--CCCCCCCHHHHHHHHHHHHHHcCCCCe----------------------------------
Q psy2890 384 WKDWYIDKENCYCI-NS--CKYNNMSHKEATNAISTDLIKLGLGNK---------------------------------- 426 (893)
Q Consensus 384 ~~~~~~~~g~~~~~-~s--~~~~gl~~~~a~~~i~~~L~~~~~~~~---------------------------------- 426 (893)
+. ++ |+|.||++.+|+++|++.|++.|++.+
T Consensus 300 ------------~~~~~~~g~~~Gl~~~~a~~~iv~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~qWFv~~~~~~ 367 (862)
T 1gax_A 300 ------------MEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRMRPLA 367 (862)
T ss_dssp ------------BCSSSSCTTTSSSBSSHHHHHHHHHHHTTTCEEEEEEEEECCEEETTTCSBCCEEECCEEEECHHHHH
T ss_pred ------------cccccCCcccCCcCHHHHHHHHHHHHHhCCCeeeeccccccCCeecCCCCeEEEEecceEEEEhHHHH
Confidence 33 46 789999999999999999999998532
Q ss_pred ----------eeEe--------------eecceeeccccccCCccCeEEcCCCCeeecCCCCCCccCCCccCCCCccccc
Q psy2890 427 ----------KNIF--------------RLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKEN 482 (893)
Q Consensus 427 ----------~~~~--------------~l~DW~ISRQr~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~g~~l~~~ 482 (893)
.++| +++|||||||||||+|||+|+|++|+.+.|...+++ + ...
T Consensus 368 ~~~l~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~pIP~w~~~~~~~i~v~~~~~l---~---------~~~ 435 (862)
T 1gax_A 368 EEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDCQAVNVPRPERY---L---------EDP 435 (862)
T ss_dssp HHHHHHHHHTCCEESSSHHHHHHHHHHHTCCCCCCBCCCSSSCCCCCEEETTTCCEECCCGGGT---T---------CCC
T ss_pred HHHHHHHHcCCceEcCHHHHHHHHHHHhcccceeEecccCCCcccCceecCCCCEEEEeccccc---c---------ccc
Confidence 1222 689999999999999999999999998877653221 0 000
Q ss_pred ccccccccCCCCc-cceecCCccccccccc-chhhhhcCCCccccCCChhhhhccCCceeeecchhhHHHHHHHHHHHHH
Q psy2890 483 KKFLHVSCPKCNK-LAFRETDTMDTFVDSS-WYYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTK 560 (893)
Q Consensus 483 ~~~~~~~c~~~g~-~~~re~d~~D~WfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~~~ 560 (893)
..|++||+ .++|++|||||||||+ |||+++++|.+ .+++++|||+|+|++|+|+. |+|++|++..
T Consensus 436 -----~~~~~~g~~~~~r~~DvlDtWfdS~~~~~~~~~~p~~------~~~~~~~~P~d~~v~G~Dii--~~W~a~~~~~ 502 (862)
T 1gax_A 436 -----TSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEE------TEDLKAFYPGDVLVTGYDIL--FLWVSRMEVS 502 (862)
T ss_dssp -----CSCTTTCCSCEEECCCCBCHHHHHTSCTTGGGTTTSC------CHHHHHSCSBSCEEEEGGGT--TTTHHHHHHH
T ss_pred -----hhhhhcCchheecCCcccceeeccCCcchhhccCCCc------hHHHHhhCCceEEecCcccc--ccHHHHHHHH
Confidence 26888987 7999999999999997 99999999963 35789999999999999964 5555555443
Q ss_pred HHHHhcCccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceeccccccccCC
Q psy2890 561 LMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSK 640 (893)
Q Consensus 561 ~l~~~g~~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSKSk 640 (893)
.+. +.+.+||++|++||||+ | .+| +|||||+
T Consensus 503 ~~~----~~g~~Pfk~v~~hG~vl-------d-~~G-------------------------------------~KMSKSl 533 (862)
T 1gax_A 503 GYH----FMGERPFKTVLLHGLVL-------D-EKG-------------------------------------QKMSKSK 533 (862)
T ss_dssp HHH----HSSSCSBSEEEEECCEE-------C-TTS-------------------------------------CBCCTTT
T ss_pred HHH----hcCCCcccEEEEeeeEE-------c-CCC-------------------------------------CCccccC
Confidence 333 34558999999999998 4 566 8999999
Q ss_pred CCccCccchhhhhCchhHHHHHHhcCCCCCCcccChhhhhHHHHHHHHHHHHHHhhhhccccccccccccCCccccCCCh
Q psy2890 641 NNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNN 720 (893)
Q Consensus 641 gN~i~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~~~~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (893)
||+|+|.++|++||||++|||+++.+++++|++|+++.++++++|++|+||+++++.+++. .+.+ .....+.
T Consensus 534 GNvIdP~dli~~yGaDalR~~ll~~~~~~~D~~fs~~~l~~~~~f~nkl~N~~rf~~~~~~---~~~~-----~~~~~~~ 605 (862)
T 1gax_A 534 GNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFANKLYNAARFVLLSRE---GFQA-----KEDTPTL 605 (862)
T ss_dssp TCCCCHHHHHHHHCHHHHHHHHHHHCCTTCCEECCHHHHHHHHHHHHHHHHHHHHHHHHSS---SCCC-----CBCCCCH
T ss_pred CCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHhccc---CCCC-----ccccCCH
Confidence 9999999999999999999999999899999999999999999999999999988765322 1100 1123678
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HHHHhh----cccccCCCCCcccHHHHHHHHHHHHHHhcccc
Q psy2890 721 NQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIFN-ILERIN----SETKFDNNKNTNNDILLYEGMSIFLRVLNPIA 795 (893)
Q Consensus 721 ~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fvn-~l~~~~----k~~~~~~~~~~~~~~~l~~~l~~ll~LL~P~~ 795 (893)
.|+||+++++.++++++++|++|+|++|++.+++|++ ++++++ +.+++.+ ..+++.+++++|+.+++||+|||
T Consensus 606 ~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yie~~k~~l~~~--~~~~~~~l~~~l~~~~~lL~P~~ 683 (862)
T 1gax_A 606 ADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWYLEAAKPALKAG--NAHTLRTLEEVLAVLLKLLHPMM 683 (862)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTTHHHHHHHHHHTT--BHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhHHHHHHcchhhhcc--HHHHHHHHHHHHHHHHHHHhhhh
Confidence 8999999999999999999999999999999999995 566532 2233322 34568899999999999999999
Q ss_pred cchHHHHHHHhhccCCCCCeeeccCCCCChhhhh-hHHHHHHHHHHhhh---hcceEEEecCC
Q psy2890 796 PHITHILWKELKYSIQQGDILNACWPKIDSLALE-EEKEEVKLIIQING---KFRGHIFVKKK 854 (893)
Q Consensus 796 P~isEEIwq~L~~~~~~~sI~~~~wP~~d~~~~~-~~~~~~~~vv~i~g---k~R~~~~v~~~ 854 (893)
||+|||||+.|+. ++||+.++||+++. .+ ..++.++.+++|++ ++|++.+++++
T Consensus 684 P~~aEeiw~~L~~---~~sv~~~~wP~~~~--~d~~~~~~~~~~~~v~~~~r~~r~~~~i~~~ 741 (862)
T 1gax_A 684 PFLTSELYQALTG---KEELALEAWPEPGG--RDEEAERAFEALKQAVTAVRALKAEAGLPPA 741 (862)
T ss_dssp HHHHHHHHHHHHC---CSCGGGSCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred hHHHHHHHHhcCC---CCeEEecCCCCCCc--CCHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Confidence 9999999999985 67999999999872 22 23566778877776 66666666554
No 4
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=100.00 E-value=1e-131 Score=1217.75 Aligned_cols=700 Identities=21% Similarity=0.363 Sum_probs=565.4
Q ss_pred CCCCchHHHHHHHHHHHhCCCcccCCCCCCCCCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCcccccccc
Q psy2890 3 KKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGW 82 (893)
Q Consensus 3 ~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~ 82 (893)
++|||.++|++||++|+++++|+...+.+ .++++|+|++|||||||.|||||+++++++|+++||+||+||+|++++||
T Consensus 6 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~-~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~ 84 (821)
T 1ile_A 6 GEPNFPKLEEEVLAFWKREKIFQKSVENR-KGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGW 84 (821)
T ss_dssp CCCCHHHHHHHHHHHHHHTTHHHHHHHHT-TTSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEE
T ss_pred cCCCHHHHHHHHHHHHHHCCCcccChhhc-CCCCcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccc
Confidence 47999999999999999999999864311 23789999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHc-CCC----------------HHHHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHHHH
Q psy2890 83 DAFGMPAENAAILN-NTS----------------PAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLK 145 (893)
Q Consensus 83 D~~G~pie~~a~~~-g~~----------------~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~ 145 (893)
||||+|||.+|+++ |.+ |++|+.++++.|++++++||+++||+++++|+||.|+++++|+|.+
T Consensus 85 D~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~ 164 (821)
T 1ile_A 85 DTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKN 164 (821)
T ss_dssp CCCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHhcccccchHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHH
Confidence 99999999999986 876 4678899999999999999999999999999999999999999999
Q ss_pred HHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHHHH
Q psy2890 146 MFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQV 225 (893)
Q Consensus 146 L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~ 225 (893)
|+++|+||++.++|+|||.|+|+|||+||.+|+|++|
T Consensus 165 L~~~Gliy~~~~~v~wcp~~~t~Lad~ev~~G~~~~~------------------------------------------- 201 (821)
T 1ile_A 165 LFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYKEIQ------------------------------------------- 201 (821)
T ss_dssp HHHTTCEEEECCEEEEETTTTEECCHHHHHHTEEEEE-------------------------------------------
T ss_pred HHHcCCeeecCcceEecCCCCCcccHhHhhcCccccc-------------------------------------------
Confidence 9999999999999999999999999999987755322
Q ss_pred hhcccccceeeeeccccCCCCCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhc------hHHHHHHHHHH
Q psy2890 226 NWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARN------NLLLQKFILEY 299 (893)
Q Consensus 226 ~wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~------~~~~~~~~~~~ 299 (893)
+.+++|+|++.+... ....+.+|+||||||||||||+||||||+++|+...... ...+..+++
T Consensus 202 -----~~~~~v~f~~~~~~~----~~~~~~~l~v~TTrP~Tl~g~~av~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~-- 270 (821)
T 1ile_A 202 -----DPSVYVRFPLKEPKK----LGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLG-- 270 (821)
T ss_dssp -----EEEEEEEEEBSSGGG----GTCSSEEEEEEESCGGGGGGCCCEEECTTSCEEEEEETTEEEEEETTHHHHHTC--
T ss_pred -----CceEEEEEEecCCcc----cCCCCCEEEEEcCCChhhhhcEEEEECCCCceeEEEcCCcEEEehHHHHHHHHh--
Confidence 234688898863200 001257899999999999999999999999987654311 223333332
Q ss_pred hhcCcccccccccccc-ccceEEEcCCC---CCeeeEEEecccccCCCCCcc-ccCCCCCHHHHHHHHHcCCceeeeecC
Q psy2890 300 KKNNNIESNNLLKKSI-LTQLKVLHPLT---NQEIKVFVVNYVIEKSYGRAA-IGVPAHNKHDFYFAKKHSLLIKQVINV 374 (893)
Q Consensus 300 ~~~~~~~~~~~~~~g~-~~g~~~~~P~~---~~~ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~~~~~~~l~~~~vi~~ 374 (893)
.. . ....+++|. +.|+.+.||++ ++.+||++++||+ +++|||+ |+|||||++||++|++||||++++|++
T Consensus 271 --~~-~-~~~~~~~G~~l~g~~~~~p~~~~~~~~~pi~~~~~V~-~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~ 345 (821)
T 1ile_A 271 --EG-T-QVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVS-QEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDE 345 (821)
T ss_dssp --TT-S-CEEEEECHHHHTTCBBCCSSCCCCSSCSBEEECTTCC-SSSSCSCEECCTTSCHHHHHHHHHTTCCCCCCBCT
T ss_pred --hC-c-EEEEEechHHhcCCEEEcCCcccCCCEEEEEecCcCc-cCCCCcceEecCCCCHHHHHHHHHcCCCcceeECC
Confidence 11 1 134466787 79999999995 8999999999999 9999999 999999999999999999999999986
Q ss_pred CCCCccccccccccccCCccccccCCCCCCCCHHHHHHHHHHHHHHcCCCCee---------------------------
Q psy2890 375 KNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNKK--------------------------- 427 (893)
Q Consensus 375 ~~g~~~~~~~~~~~~~~g~~~~~~s~~~~gl~~~~a~~~i~~~L~~~~~~~~~--------------------------- 427 (893)
+| . +.++| |+||.+.+|+++|++.|++.|.+.+.
T Consensus 346 -~G---------------~--~~~~~-~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~h~~p~c~r~~~~~~~~~~~qWF~ 406 (821)
T 1ile_A 346 -EG---------------K--LLVEP-FKGLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFI 406 (821)
T ss_dssp -TS---------------B--BCSGG-GTTCBHHHHHHHHHHHHHHTTCEEEEEEEEEEEEBCSSSCCBCEEEECCEEEE
T ss_pred -CC---------------c--CcccC-cCCCCHHHHHHHHHHHHHhCCCeeeeecccccCCEecCCCCEEEEEecchhhh
Confidence 44 3 55556 99999999999999999999985332
Q ss_pred ---------------eEe---------------eecceeeccccccCCccCeEEcCCCCeeecCC--CCCCccCCCccCC
Q psy2890 428 ---------------NIF---------------RLRDWAISRQRYWGTPIPIIYCDSCGSVPVPE--KDLPVILPETCVP 475 (893)
Q Consensus 428 ---------------~~~---------------~l~DW~ISRQr~WG~pIPi~~~~~~~~v~v~~--~~lpv~lp~~~~~ 475 (893)
++| +++|||||||||||+|||+|+|++||.+.+.+ ++|. ..+.+.
T Consensus 407 ~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~~~~~~~~~~vi~~~~~l~-~~~~~~-- 483 (821)
T 1ile_A 407 KNTLFKDELIRNNQEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELK-ARATKP-- 483 (821)
T ss_dssp CGGGGHHHHHHHHHHSEESSGGGTTTTTHHHHHTCCCEECCBCCSSSCBCCEEEESSSSCCEECCSHHHHH-HHBSSC--
T ss_pred chHHHHHHHHHHhcCeEEECchhhHhHHHHHHhCCchheecccCCCCCeeeEEEecCCCcEEeeCcHHHHH-hhcccc--
Confidence 222 57899999999999999999999998766532 2220 000000
Q ss_pred CCc--ccccc---cccccccCCCCccceecCCccccccccc-chhhhhcCCCccccCCChhhhhccCCceeeecchhhHH
Q psy2890 476 NNL--LKENK---KFLHVSCPKCNKLAFRETDTMDTFVDSS-WYYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAI 549 (893)
Q Consensus 476 g~~--l~~~~---~~~~~~c~~~g~~~~re~d~~D~WfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i 549 (893)
++ ...++ +++...|| ||+.++|++|||||||||+ |++..+++|.+ +++.+++|+|+|+|++|+||+
T Consensus 484 -~~~~~~l~~~~~d~~~~~~~-~g~~~~r~~dvld~WfdS~~~~~~~~~~p~~-----~~~~f~~~~P~dl~~~G~D~~- 555 (821)
T 1ile_A 484 -LPEPFDPHRPYVDQVELACA-CGGTMRRVPYVIDVWYDSGAMPFASLHYPFE-----HEEVFRESFPADFIAEGIDQT- 555 (821)
T ss_dssp -CCSSCCCSHHHHTTCEEECT-TSSEEEECSCBCCHHHHHHHHHHHTTTTTTS-----CHHHHHHHSSBSBEEEEGGGG-
T ss_pred -ccchhhhccccccccccCCC-CCCchhhcccccceecccccchHhhcCCCcc-----chHHHhhcCCcccccchhhhh-
Confidence 01 11112 34557899 9999999999999999998 57777778763 245688999999999999994
Q ss_pred HHHHHHHHHHHHHHHhcC-ccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcc
Q psy2890 550 LHLLYARFWTKLMYNLGL-IKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPV 628 (893)
Q Consensus 550 ~Hl~y~rf~~~~l~~~g~-~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~ 628 (893)
|||+..|..++. +.+.+||+++++||||+ | .+|
T Consensus 556 ------r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl-------~-~~G-------------------------------- 589 (821)
T 1ile_A 556 ------RGWFNSLHQLGVMLFGSIAFKNVICHGLIL-------D-EKG-------------------------------- 589 (821)
T ss_dssp ------GTHHHHHHHHHHHHHSSCSBSEEEEECCEE-------C-TTS--------------------------------
T ss_pred ------ccHHHHHHHHHHHhcCCCCcceEEEEeeEE-------C-CCC--------------------------------
Confidence 355555555544 45678999999999998 3 566
Q ss_pred eeccccccccCCCCccCccchhhhhCchhHHHHHHhcCCCCCCcccChhhhhH-HHHHHHHHHHHHHhhhhccccccccc
Q psy2890 629 IIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEG-AYRFLNRVWNFSYILAPRIINIINLN 707 (893)
Q Consensus 629 ~~~~~~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~-~~~~l~rl~n~~~~~~~~~~~~~~~~ 707 (893)
+|||||+||+|+|.++|++||||++|||+|+.+++++|++|+++.+++ +.++++|+||+++++.. +.+...+.
T Consensus 590 -----~KMSKS~GNvV~p~dli~~yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~~~~~~kl~N~~~~~~~-~~~~~~~~ 663 (821)
T 1ile_A 590 -----QKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTLWNVYSFFVT-YANLDRPD 663 (821)
T ss_dssp -----SCCCTTTTCCCCHHHHHTTTCHHHHHHHHHHHSCSSSCEECCHHHHHHHHHHTHHHHHHHHHHHHH-HHHHHCCC
T ss_pred -----CCCCccCCCCCCHHHHHHHhCHHHHHHHHHhCCCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHH-hhccccCC
Confidence 899999999999999999999999999999999999999999999999 58999999999988642 11111111
Q ss_pred c-ccCCccccCCChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHHHHhh----cccccCCC---CCcccHH
Q psy2890 708 I-FHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIF-NILERIN----SETKFDNN---KNTNNDI 778 (893)
Q Consensus 708 ~-~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fv-n~l~~~~----k~~~~~~~---~~~~~~~ 778 (893)
+ .. .....++..|+|++++++.+++++.++|++|+|++|++.+++|+ +.+++++ +.++|... +..+++.
T Consensus 664 ~~~~--~~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yl~~~k~~~~~~~~~~~r~~~~~ 741 (821)
T 1ile_A 664 LKNP--PPPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFWKNEDALDREAAYA 741 (821)
T ss_dssp TTSC--CCSTTSCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTTHHHHHHHHHTCTTTSSTTHHHH
T ss_pred cccc--cccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcHHHHHHHH
Confidence 0 00 01223567899999999999999999999999999999999999 6666532 23334322 2235678
Q ss_pred HHHHHHHHHHHHhcccccchHHHHHHHhhccC--CCC-CeeeccCCCCChhhhh-hHHHHHHHHHHhhhhcc
Q psy2890 779 LLYEGMSIFLRVLNPIAPHITHILWKELKYSI--QQG-DILNACWPKIDSLALE-EEKEEVKLIIQINGKFR 846 (893)
Q Consensus 779 ~l~~~l~~ll~LL~P~~P~isEEIwq~L~~~~--~~~-sI~~~~wP~~d~~~~~-~~~~~~~~vv~i~gk~R 846 (893)
+++++++.+++||+|||||+|||||+.|+... ..+ ||+.++||++++..++ ..+..++.+.+++..+|
T Consensus 742 ~l~~~l~~~~~lLaP~~P~~aeelw~~L~~~~~~~~~~sv~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~r 813 (821)
T 1ile_A 742 TLYEALVLVATLAAPFTPFLAEVLWQNLVRSVRLEAKESVHLADWPEADPALADEALVAQMRAVLKVVDLAR 813 (821)
T ss_dssp HHHHHHHHHHHHHTTTSTTHHHHHHHHHTTTTSTTSCSSGGGSCCCCCCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCccchHHHHHHHhccccccCCCCCceEeecCCCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998521 125 9999999999876555 23456777777665444
No 5
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=4.6e-131 Score=1213.65 Aligned_cols=700 Identities=20% Similarity=0.330 Sum_probs=554.1
Q ss_pred CCCCchHHHHHHHHHHHhCCCcccCCCCCCCCCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCcccccccc
Q psy2890 3 KKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGW 82 (893)
Q Consensus 3 ~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~ 82 (893)
.+||+.++|++||++|+++++|+...+.+ .++++|+|++|||||||.|||||++|++++|+++||+||+||+|+|++||
T Consensus 16 m~~~~~~~E~~~~~~W~~~~~f~~~~~~~-~~~~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~Gw 94 (917)
T 1ffy_A 16 MRGGLPNKEPQIQEKWDAEDQYHKALEKN-KGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGW 94 (917)
T ss_dssp SSCCHHHHHHHHHHHHHHTTHHHHHHHHT-TTSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEE
T ss_pred CCCChHHHhHHHHHHHHHCCCcccchhhc-cCCCceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccC
Confidence 46999999999999999999999854211 23789999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHcCCCH------------HHHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHHHHHHhcC
Q psy2890 83 DAFGMPAENAAILNNTSP------------AKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRG 150 (893)
Q Consensus 83 D~~G~pie~~a~~~g~~~------------~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G 150 (893)
||||+|||.+|+++|+++ ++|+.++++.|+++|++||+++||+++|.|+||.|+++++++|.+|+++|
T Consensus 95 D~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~~kG 174 (917)
T 1ffy_A 95 DTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKG 174 (917)
T ss_dssp BCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHcCCCchhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHHHcC
Confidence 999999999999999874 78999999999999999999999999999999999999999999999999
Q ss_pred cceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHHHHhhccc
Q psy2890 151 IIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIGK 230 (893)
Q Consensus 151 liy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~wi~~ 230 (893)
+||++.++|+|||.|+|+|||+|| ++++. +
T Consensus 175 liYr~~~~v~wcp~~~T~Lae~eV------------ey~d~--------------------------------------~ 204 (917)
T 1ffy_A 175 LIYKGKKPVYWSPSSESSLAEAEI------------EYHDK--------------------------------------R 204 (917)
T ss_dssp CEEEEEEEEEEETTTTEECCGGGE------------EEEEE--------------------------------------E
T ss_pred CeEecccceeccCCCCcCcchhhh------------hcccc--------------------------------------c
Confidence 999999999999999999999775 44432 3
Q ss_pred ccceeeeeccccCCCCCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhchH--HHHHHHHHHhhcCcccc-
Q psy2890 231 SKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNL--LLQKFILEYKKNNNIES- 307 (893)
Q Consensus 231 s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~- 307 (893)
|.+++|+|++.++. + .+..+.+++||||||||||||+||||||+++|+...+.... ...++++.+......++
T Consensus 205 ~~~~~v~f~~~~~~-g---~~~~~~~~~i~TTrP~Tl~~~~av~v~p~~~Y~~v~~~~~~~i~a~~~~~~~~~~~~~~~~ 280 (917)
T 1ffy_A 205 SASIYVAFNVKDDK-G---VVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKA 280 (917)
T ss_dssp EEEEECCBCCCSST-T---GGGTTCCBCCEESCGGGSSCCBCCCCCTTCCCCCCCTTTTCCCCCHHHHHHHHTTTTCCSS
T ss_pred CceEEEEEEecccc-c---ccCCCCeEEEEeCCcchhhhceEEEECCCCceEEEEeCCceeehHHHHHHHHHHhcCcccc
Confidence 56788999987421 0 01125789999999999999999999999999865432210 11233333333221111
Q ss_pred ---cccccccc-ccceEEEcCCCCCeeeEEEecccccCCCCCcc-ccCCCCCHHHHHHHHHcCCceeeeecCCCCCcccc
Q psy2890 308 ---NNLLKKSI-LTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAA-IGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDK 382 (893)
Q Consensus 308 ---~~~~~~g~-~~g~~~~~P~~~~~ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~ 382 (893)
...++.|. |.|+++.||++++++||+.++||+ +++|||+ |+|||||++||+++++||||++++|++ +|.
T Consensus 281 ~~~~~~~~~G~~l~g~~~~~P~~~~~~pvi~~~~V~-~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~vd~-~G~---- 354 (917)
T 1ffy_A 281 SIKLEKEYTGKELEWVVAQHPFLDRESLVINGDHVT-TDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDD-KGV---- 354 (917)
T ss_dssp CCCCCCCCCTTTCTTCCCBCCTTCCSBCCCCCCSSC-CSSSCSCCCBCTTSCSHHHHTTTSSSCCCCCCCCS-SSC----
T ss_pred eeeeeeeeecccccCCEEECCCCCCeeeEEeccccc-cCCCCceeEeCCCCCHHHHHHHHHcCCCeeeeECC-Cce----
Confidence 23456786 899999999999999999999999 9999999 999999999999999999999999986 442
Q ss_pred ccccccccCCccccccCCCCCCCCHHHHHHHHHHHHHHcCCCC----------------eeeEe----------------
Q psy2890 383 IWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGLGN----------------KKNIF---------------- 430 (893)
Q Consensus 383 ~~~~~~~~~g~~~~~~s~~~~gl~~~~a~~~i~~~L~~~~~~~----------------~~~~~---------------- 430 (893)
|++ +.|.|+||++.+|+++|++.|++.|.+. ..+.|
T Consensus 355 -----~~~-------~~~~~~G~~v~~A~~~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv~~r~t~QWFi~~~~lr~~ 422 (917)
T 1ffy_A 355 -----FTE-------EGGQFEGMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQD 422 (917)
T ss_dssp -----CCT-------TCSSCSSSCSSHHHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEEEEEEEEECHHHHHHH
T ss_pred -----eCC-------cccccCCcCHHHHHHHHHHHHHhCCCccccccccccCCEecCCCCEEEEEeccceEeeHHHHHHH
Confidence 332 2468999999999999999999988732 22222
Q ss_pred ------------------------eecceeeccccccCCccCeEEcCCCCeeecCCCCCCccCCCccCC-CCc--c-ccc
Q psy2890 431 ------------------------RLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVP-NNL--L-KEN 482 (893)
Q Consensus 431 ------------------------~l~DW~ISRQr~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~-g~~--l-~~~ 482 (893)
+++||||||||+||+|||+|||++ |.++++++ ++..+++.+.- |.. + ...
T Consensus 423 ~l~~i~~~~~~P~~~~~r~~~~l~~~~DW~ISRqr~WG~PIP~~~~~~-g~~~~~~~-~~~~i~~~~~~~g~~~W~~~~~ 500 (917)
T 1ffy_A 423 ILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAEN-GEIIMTKE-TVNHVADLFAEHGSNIWFEREA 500 (917)
T ss_dssp HHHHHHTSEESSHHHHHHHHHHHHHCCCEECEESCSSSCBCCCEECTT-SCEECCHH-HHHHHHHHHHHHCTHHHHHSCH
T ss_pred HHHHHhcCcccCHHHHHHHHHHHhcCccceeeccCCcCcccceeeCCC-CCEecCHH-HHHHHHHHhhhcCCcccccCCH
Confidence 246999999999999999999988 66555543 32222221110 210 0 011
Q ss_pred cccc--ccccCCCCc-cceecCCccccccccc-chhhhhcCCCccccCCChhhhhccCCceeeecchhhHHHHHHHHHHH
Q psy2890 483 KKFL--HVSCPKCNK-LAFRETDTMDTFVDSS-WYYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFW 558 (893)
Q Consensus 483 ~~~~--~~~c~~~g~-~~~re~d~~D~WfdSs-w~~~~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~ 558 (893)
..|. ...||+||. .++|++|||||||||+ |+|...... +++ .+|+|+|++|+||... ||.
T Consensus 501 ~~~~~~~~~~~~~g~~~~~~~~D~lD~WfdSg~~~~~~l~~~---------~~~--~~P~Dl~~~G~D~~r~-----wf~ 564 (917)
T 1ffy_A 501 KDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETR---------PEL--SFPADMYLEGSDQYRG-----WFN 564 (917)
T ss_dssp HHHSSTTCCCSSCTTSCCEECCCEECHHHHHHTHHHHTTTTS---------TTC--CSSBSEEEEEGGGGTT-----HHH
T ss_pred HHhcccccccccCCcccccccCCCcCeecCCCCCHHHHcCCc---------hhc--CCCceEEEEEeccccc-----HHH
Confidence 2232 258999985 7999999999999994 433332221 112 3899999999999432 233
Q ss_pred HHHHHHhcCccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceecccccccc
Q psy2890 559 TKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSK 638 (893)
Q Consensus 559 ~~~l~~~g~~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSK 638 (893)
..++.+.+ +.+.+||+++++||||+ | .+| +||||
T Consensus 565 ~~l~~s~~-~~g~~Pfk~v~~hG~V~-------d-~~G-------------------------------------~KMSK 598 (917)
T 1ffy_A 565 SSITTSVA-TRGVSPYKFLLSHGFVM-------D-GEG-------------------------------------KKMSK 598 (917)
T ss_dssp HHHHHHHH-HHSSCSBSEEEEECCEE-------C-TTS-------------------------------------CCCCS
T ss_pred HHHHHHHH-hhCCCcccceeEeeeEE-------c-CCC-------------------------------------cCccc
Confidence 33344443 56779999999999998 4 555 89999
Q ss_pred CCCCccCccchhhhhCchhHHHHHHhcCCCCCCcccChhhhhHHHHHHHHHHHHHHhhhhccccccccccccCCccccCC
Q psy2890 639 SKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHNDFSVIKF 718 (893)
Q Consensus 639 SkgN~i~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~~~~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (893)
|+||+|+|.++|++||||++|||+++ +++++|++|+++.++++.++++||||+++++..++. .+.+.........+
T Consensus 599 SlGNvV~P~dvi~~yGaDalR~~lls-~~~~~D~~fs~~~l~~~~~~~~kl~n~~r~~l~nl~---~~~~~~~~v~~~~l 674 (917)
T 1ffy_A 599 SLGNVIVPDQVVKQKGADIARLWVSS-TDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNIN---DFNPDTDSIPESEL 674 (917)
T ss_dssp SSSCCCCHHHHHHHTCHHHHHHHHHT-SCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTST---TCCHHHHCCCGGGS
T ss_pred ccCCcCChHHHHHhCCHHHHHHHHhc-cCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhhhh---ccCcccccCCcccc
Confidence 99999999999999999999999998 789999999999999999999999999999876332 11100000022345
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HHHHhh----cccccCCCC----CcccHHHHHHHHHHHHH
Q psy2890 719 NNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIFN-ILERIN----SETKFDNNK----NTNNDILLYEGMSIFLR 789 (893)
Q Consensus 719 ~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fvn-~l~~~~----k~~~~~~~~----~~~~~~~l~~~l~~ll~ 789 (893)
+..|+|+++++++++++++++|++|+|++|++.+|+|++ ++++++ ++++|.... ..+++.+++.+++.+++
T Consensus 675 ~~~D~~il~~l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~l~~~Yl~~~k~rl~~~~~~~~~r~~~~~~l~~~l~~l~~ 754 (917)
T 1ffy_A 675 LEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTK 754 (917)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999998 676543 445554322 12567899999999999
Q ss_pred HhcccccchHHHHHHHhhccCCCCCeeeccCCCCChhhhh-hHHHHHHHHHHhhhhcc
Q psy2890 790 VLNPIAPHITHILWKELKYSIQQGDILNACWPKIDSLALE-EEKEEVKLIIQINGKFR 846 (893)
Q Consensus 790 LL~P~~P~isEEIwq~L~~~~~~~sI~~~~wP~~d~~~~~-~~~~~~~~vv~i~gk~R 846 (893)
||+|||||+|||||+.|+.. .++||+.+.||++++ .+ ..++.++.+++|+++++
T Consensus 755 lLaP~~P~~aEeiw~~l~~~-~~~sv~~~~wP~~~~--~~~~l~~~~~~~~~v~~~v~ 809 (917)
T 1ffy_A 755 LLAPILVHTAEEVWSHTPHV-KEESVHLADMPKVVE--VDQALLDKWRTFMNLRDDVN 809 (917)
T ss_dssp HHTTTSHHHHHHHHTTSTTC-SSSSGGGSCCCCCCC--CCHHHHHHHHHHHHHHHHHH
T ss_pred HhcccccHHHHHHHHHcccC-CCCCeEecCCCCCCc--chHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999742 246999999999876 11 12456777777765433
No 6
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.2e-118 Score=1114.79 Aligned_cols=692 Identities=22% Similarity=0.332 Sum_probs=521.4
Q ss_pred CCCCchHHHHHHHHHHHhCCCcccCCCCCCCCCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCcccccccc
Q psy2890 3 KKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGW 82 (893)
Q Consensus 3 ~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~ 82 (893)
+.|||.++|++||++|+++++|++..+ +..++++|+|++|||||||.|||||++|++++|+++||+||+||+|+|++||
T Consensus 2 ~~~~~~~iE~~~~~~W~~~~~f~~~~~-~~~~~~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~Gw 80 (967)
T 1wz2_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIR-DKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAW 80 (967)
T ss_dssp --CCCHHHHHHHHHHHHHHTTTSCCGG-GSCGGGCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCB
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccCcc-ccCCCCcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcC
Confidence 469999999999999999999998765 3122489999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHc---------------C---------CCHHHHHHHHHHHHHHHHHHcCCcccccCccccCC--hhhH
Q psy2890 83 DAFGMPAENAAILN---------------N---------TSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCS--PKYY 136 (893)
Q Consensus 83 D~~G~pie~~a~~~---------------g---------~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~--~~~~ 136 (893)
||||+|||..|.+. | .+|++|+.++++.|+++|++||+++||+++|.|+| |.|+
T Consensus 81 D~~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~ 160 (967)
T 1wz2_A 81 HITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFS 160 (967)
T ss_dssp BCCSSHHHHHHHHHHTTCHHHHHHHHTTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHH
T ss_pred CCCCcHHHHHHHHhhccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHH
Confidence 99999999987642 3 36899999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCC
Q psy2890 137 KWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYW 216 (893)
Q Consensus 137 ~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 216 (893)
++++|+|.+|+++|+||++.++|+|||.|+|+|||+||.+|.+..
T Consensus 161 ~~v~~~F~~L~~kGliyr~~~~v~wcp~~~T~Lad~Ev~~~~~~~----------------------------------- 205 (967)
T 1wz2_A 161 KFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVP----------------------------------- 205 (967)
T ss_dssp HHHHHHHHHTTTTTCEEECCCCCEECTTTSCBCCSSSCSSCCCCC-----------------------------------
T ss_pred HHHHHHHHHHHHCCCEEEeceEecccCCCCCCcchhhhccCCCce-----------------------------------
Confidence 999999999999999999999999999999999999998774310
Q ss_pred hHHHHHHHHhhcccccceeeeeccccCCCCCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhc----hH--
Q psy2890 217 PKKVRLMQVNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARN----NL-- 290 (893)
Q Consensus 217 p~~~~~~~~~wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~----~~-- 290 (893)
.+..++|+|++.+.. .+.+++|||||||||+|++||||||+++|+...+.. ..
T Consensus 206 -------------~~~~~~v~f~~~~~~--------~~~~l~i~TTrPeTl~g~~avav~P~~~Y~~~~~~~~~~~~~~i 264 (967)
T 1wz2_A 206 -------------ILDYIIIKFELRENG--------EVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKDKEETWI 264 (967)
T ss_dssp -------------EECCEEEEEECCCSS--------SCCEEEEEESCGGGGGGCCEEEECSSSCEEEEEEECSSCEEEEE
T ss_pred -------------eceeEEEEEEecCCC--------CceEEEEEcCCchHhhhheEEEECCCCcEEEEEecCCCcceeee
Confidence 123468999987321 136899999999999999999999999987643211 00
Q ss_pred HHHHHHHHHhhcCcccccccccccc-ccceEEEcCCCCCeeeEEEecccccCCCCCcc-ccCCCCCHHHHHH--------
Q psy2890 291 LLQKFILEYKKNNNIESNNLLKKSI-LTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAA-IGVPAHNKHDFYF-------- 360 (893)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~~~~P~~~~~ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~~-------- 360 (893)
...+..+.+..+........+++|. |.|+++.||++++++||++++||+ +++|||+ |+|||||++||++
T Consensus 265 ~a~~~~~~~~~~~~~~~~~~~~~G~~l~G~~~~~P~~~~~ipi~~~~~V~-~~~GTG~V~~~Pah~~~Dy~~~~~~~~~~ 343 (967)
T 1wz2_A 265 VSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEVIILPAEFVD-PDNATGVVMSVPAHAPFDHVALEDLKRET 343 (967)
T ss_dssp EEHHHHHHHHHSSCEEEEEEECCSSTTSSCEEECSSSSCEEEEEECSSCC-SSSTTSCEEECTTSCTTTTTTTSCCSCCS
T ss_pred hHHHHHHHHHhhccCcEEEEEEEchhhcCCEEECCCCCCceEEEeccccc-CCCCcccEEeecCCCHHHHHHHHhhccch
Confidence 0012222333222111134567887 899999999999999999999999 9999999 9999999999974
Q ss_pred --HHHcCCc--------eeeeecCCCCC--cc--------------c---cc--ccccccc---CCccccccCCCCCCCC
Q psy2890 361 --AKKHSLL--------IKQVINVKNKS--YS--------------D---KI--WKDWYID---KENCYCINSCKYNNMS 406 (893)
Q Consensus 361 --~~~~~l~--------~~~vi~~~~g~--~~--------------~---~~--~~~~~~~---~g~~~~~~s~~~~gl~ 406 (893)
|++|||+ ++++|+. +|. .. + +. .+.+|++ +|+ +. +|+|+|+.
T Consensus 344 ~~~~k~~l~~~~~~~l~~i~vi~~-~~~g~~~~~~~~~~~~i~~~~d~~~l~~a~~~~y~~~~~~G~--~~-~g~~~G~~ 419 (967)
T 1wz2_A 344 EILEKYDIDPRIVENITYISLIKL-EGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGI--FK-VPPYEGKP 419 (967)
T ss_dssp CCCCTTCCCCCCC-----------------CCSSCCTTTSSSCCCSSCTTHHHHTTHHHHHHHHSCB--CC-SSSSCSSB
T ss_pred hHHHHcCCchhhcccccceeeeec-CCccccchhhhhhhccCCCccchHHHHHHHHHhhhccccCce--Ee-ccCcCCcC
Confidence 6888987 7788754 321 10 0 00 0123443 687 76 89999999
Q ss_pred HHHHHHHHHHHHHHcCCCCe---------------ee-----------------------------Ee------------
Q psy2890 407 HKEATNAISTDLIKLGLGNK---------------KN-----------------------------IF------------ 430 (893)
Q Consensus 407 ~~~a~~~i~~~L~~~~~~~~---------------~~-----------------------------~~------------ 430 (893)
+.+|+++|++.|++.|.+.+ .+ .+
T Consensus 420 v~ea~~~i~~~L~~~g~l~~~~~~~~~p~~~R~g~~~i~~~~~~qWFi~~~~~~~k~~~l~~~~~~~~~P~~~~~~~~~~ 499 (967)
T 1wz2_A 420 VQEVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAI 499 (967)
T ss_dssp HHHHTTTTHHHHHHHTSEEECCEESSSCCBCSSSSBCEECCCSSCEEEESCCTTHHHHHHHHHTTSCEESSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCceEEEecCCCceECCCCCEEEEeccCCccceecCchHHHHHHHHhhhccEeeCccccchHHHh
Confidence 99999999999999886310 00 00
Q ss_pred --eecceeeccccccCCccCe---EEcCC--CCeeecCCCCCCccCCCccCCCCcccccccccccccCCCCcc-ceecCC
Q psy2890 431 --RLRDWAISRQRYWGTPIPI---IYCDS--CGSVPVPEKDLPVILPETCVPNNLLKENKKFLHVSCPKCNKL-AFRETD 502 (893)
Q Consensus 431 --~l~DW~ISRQr~WG~pIPi---~~~~~--~~~v~v~~~~lpv~lp~~~~~g~~l~~~~~~~~~~c~~~g~~-~~re~d 502 (893)
+++||||||||+||+|||+ |.|+. +..+.+... .++ .........+|.. -.-..+
T Consensus 500 l~~l~DW~ISRqr~WG~piP~d~~~~~~~~~ds~iYv~~~----~~~-------------~~~~~~~~~~g~~~~~l~~~ 562 (967)
T 1wz2_A 500 IDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYY----TIS-------------RHINKLRQEGKLDPEKLTPE 562 (967)
T ss_dssp HHSCCEECCCBSSSSSEECTTCTTSEECHHHHTTSTHHHH----HHH-------------HHHHHHHHTTCCCGGGCCHH
T ss_pred hhcccCeeeccCCCCCccCCcCcccccccCCCCceEeehh----hhh-------------hHHHHHHHhcCCChHHcCcc
Confidence 4679999999999999995 33321 000000000 000 0000000001110 011236
Q ss_pred cccccccc----c--chh-hhhcCCCccccCCChhhhhccCCceeeecchhhHHHHHHHHHHHHHHHHHhcCccCCCcc-
Q psy2890 503 TMDTFVDS----S--WYY-MRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPF- 574 (893)
Q Consensus 503 ~~D~WfdS----s--w~~-~~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pf- 574 (893)
++|+||.+ + |.+ ...++|...-. -.++++++|+|+|+|++|+||+++|++|.+|++..+.. ..|+
T Consensus 563 ~~d~~~~~~~~~g~~~~~~~~sG~~~~~~~-~~~~~~~~w~P~Di~~~G~D~i~~H~~~~~~~~~a~~~------~~~~p 635 (967)
T 1wz2_A 563 FFDYIFLEEFSEDKEKELEKKTGIPAEIIH-EMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFR------EEHWP 635 (967)
T ss_dssp HHHHTTTSCCCHHHHHHHHHHHTCCHHHHH-HHHHHHHHHCSCSEEEEEGGGTTTHHHHHHHHHHHHSC------STTSC
T ss_pred cceeeccCccccCccccchhhcCCCHHHHh-hhHHHHHhhCCCeEEeeeeCcchhHHHHHHHHHHHHcC------ccccc
Confidence 77777754 1 111 01233321000 01356899999999999999999999988877665432 2354
Q ss_pred ceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceeccccccccCCCCccCccchhhhhC
Q psy2890 575 IRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYG 654 (893)
Q Consensus 575 k~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yG 654 (893)
+.+++||||+ .+| +|||||+||+|+|.++|++||
T Consensus 636 k~v~~~G~v~---------~~G-------------------------------------~KMSKS~GNvv~p~d~i~~yG 669 (967)
T 1wz2_A 636 KGIAVNGFGT---------LEG-------------------------------------QKMSKSKGNVLNFIDAIEENG 669 (967)
T ss_dssp CCEEEECCEE---------ESS-------------------------------------SCCCTTTCCCCBHHHHHHTTC
T ss_pred ceEEEeeEEe---------eCC-------------------------------------EEccccccCCCCHHHHHHHhC
Confidence 9999999998 345 899999999999999999999
Q ss_pred chhHHHHHHhcCCCCCCcccChhhhhHHHHHHHHHHHHHHhhhhccccccccccccCCccccCCChhHHHHHHHHHHHHH
Q psy2890 655 ADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQ 734 (893)
Q Consensus 655 aD~lRl~ll~~~~~~~d~~~~~~~i~~~~~~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~ 734 (893)
||++|||+|+++++++|++|+++.++++.++++|+||+++++.. .. . +.....+..|+|++++++.+++
T Consensus 670 aDalR~~ll~~~~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~-~~----~------~~~~~~~~~D~~il~~l~~~~~ 738 (967)
T 1wz2_A 670 ADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQFAE-YE----V------KGNVELKDIDRWMLHRLNKAIK 738 (967)
T ss_dssp HHHHHHHHHHHCCTTCCEEECHHHHHHHHHHHHHHHHHHHHHHS-SC----C------CCCCCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHhc-CC----C------CCcccCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988754 11 0 0122456789999999999999
Q ss_pred HHHHHHhcCCHHHHHHHH-HHHHHHHHHhhcccccCCCCCcccHHHHHHHHHHHHHHhcccccchHHHHHHHhhccCCCC
Q psy2890 735 QINRDIKRIQYNTVVSGC-MKIFNILERINSETKFDNNKNTNNDILLYEGMSIFLRVLNPIAPHITHILWKELKYSIQQG 813 (893)
Q Consensus 735 ~v~~~~e~~~f~~ai~~l-~~fvn~l~~~~k~~~~~~~~~~~~~~~l~~~l~~ll~LL~P~~P~isEEIwq~L~~~~~~~ 813 (893)
+++++|++|+|++|+..+ +.+++.++.|+.... .....+++.+++++|+.+++||+|||||+|||||+.|+. ++
T Consensus 739 ~v~~~~e~~~f~~A~~~~~~~l~~~~n~Yi~~~k--~~~~~~~~~~l~~~l~~l~~LLaP~~P~~aEeiw~~L~~---~~ 813 (967)
T 1wz2_A 739 ETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTE--GRDDEAKRYVLRTLADVWVRLMAPFTPHICEELWEKLGG---EG 813 (967)
T ss_dssp HHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTT--TCCCHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHSSC---CS
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcCC---CC
Confidence 999999999999999865 577788887753211 111235778999999999999999999999999999986 67
Q ss_pred CeeeccCCCCChhhhh-hHHHHHHHHHHhh
Q psy2890 814 DILNACWPKIDSLALE-EEKEEVKLIIQIN 842 (893)
Q Consensus 814 sI~~~~wP~~d~~~~~-~~~~~~~~vv~i~ 842 (893)
||+.+.||++++..++ ..+..++.+.++.
T Consensus 814 sv~~~~wP~~~~~~~d~~~~~~~~~~~~~~ 843 (967)
T 1wz2_A 814 FVSLAKWPEPVEEWWNETIEAEEEFIRSVM 843 (967)
T ss_dssp CGGGSCCCCCCSSCCCHHHHHHHHHHHHHH
T ss_pred ceeccCCCCCCcccCCHHHHHHHHHHHHHH
Confidence 9999999998865544 2234455554443
No 7
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.1e-111 Score=1041.88 Aligned_cols=661 Identities=22% Similarity=0.340 Sum_probs=498.8
Q ss_pred CCCCchHHHHHHHHHHHhCCCcccCCCCCCCCCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCcccccccc
Q psy2890 3 KKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGW 82 (893)
Q Consensus 3 ~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~ 82 (893)
.+|||.++|++||++|+++++|++..+.+ .++++|+|++|||||||.|||||++|++++|+++||+||+||+|++++||
T Consensus 2 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~-~~~~~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~ 80 (810)
T 1wkb_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIRDK-PKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAW 80 (810)
T ss_dssp --CCCHHHHHHHHHHHHHTTTTCCCGGGS-CGGGEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCB
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccCchhc-CCCCcEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCcc
Confidence 46999999999999999999999876532 23789999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHc------------------------CCCHHHHHHHHHHHHHHHHHHcCCcccccCccccCC--hhhH
Q psy2890 83 DAFGMPAENAAILN------------------------NTSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCS--PKYY 136 (893)
Q Consensus 83 D~~G~pie~~a~~~------------------------g~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~--~~~~ 136 (893)
||||+||+..|.+. +..|++|++++.+.|+++|++||+++||+++++|++ +.|.
T Consensus 81 D~~G~pie~~a~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~ 160 (810)
T 1wkb_A 81 HITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFS 160 (810)
T ss_dssp BCCBSHHHHHHHHHHTTCHHHHHHHHHTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHH
T ss_pred CCCCChHHHHHHHhcccCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHH
Confidence 99999999887531 346899999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCC
Q psy2890 137 KWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYW 216 (893)
Q Consensus 137 ~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 216 (893)
+.++++|.+|+++|+||++.++|+|||.|+|+|||+||.+|.|..
T Consensus 161 ~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~La~~ev~~~~~~~----------------------------------- 205 (810)
T 1wkb_A 161 KFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVP----------------------------------- 205 (810)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTCCSBCSSCC-----------------------------------
T ss_pred HHHHHHHHHHHHCCCEEECCeeeeccCCcCCCccHHHHhcCCCCc-----------------------------------
Confidence 999999999999999999999999999999999999998875420
Q ss_pred hHHHHHHHHhhcccccceeeeeccccCCCCCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhc----hH--
Q psy2890 217 PKKVRLMQVNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARN----NL-- 290 (893)
Q Consensus 217 p~~~~~~~~~wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~----~~-- 290 (893)
.+..++|+|++.+.. .+.+++|||||||||+|++||||||+++|+...+.. ..
T Consensus 206 -------------~~~~~~v~f~~~~~~--------~~~~l~v~TTrP~Tl~g~~av~v~P~~~y~~~~~~~~~~~~~~i 264 (810)
T 1wkb_A 206 -------------ILDYIIIKFELRENG--------EVIYLPAATLRPETVYGVTNMWVNPNATYVKAKVRRKDKEETWI 264 (810)
T ss_dssp -------------EEEEEEEEEECCSSC--------SCCEEEEEESCGGGGGGCCEEEECTTSCEEEEEEEETTEEEEEE
T ss_pred -------------cceeEEEEEEccCCC--------CceEEEEEcCCchHhhhhhEEEECCCCcEEEEEecCCCcceeee
Confidence 012357899887421 136899999999999999999999999997643211 00
Q ss_pred HHHHHHHHHhhcCcccccccccccc-ccceEEEcCCCCCeeeEEEecccccCCCCCcc-ccCCCCCHHHHHH--------
Q psy2890 291 LLQKFILEYKKNNNIESNNLLKKSI-LTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAA-IGVPAHNKHDFYF-------- 360 (893)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~~~~P~~~~~ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~~-------- 360 (893)
...+..++++.+........+++|. |.|+++.||++++++||++++||+ +++|||+ |+|||||++||++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~G~~l~g~~~~~P~~~~~ipi~~~~~V~-~~~GTG~V~~~Pah~~~D~~~~~~~~~~~ 343 (810)
T 1wkb_A 265 VSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDEVIILPAEFVD-PDNATGVVMSVPAHAPFDHVALEDLKRET 343 (810)
T ss_dssp EEHHHHHHHTTSSCEEEEEEECTTTTTTTCEEECSSSCCEEEEEECTTSC-TTSTTSCEEECTTTCHHHHHHHCCCSCCS
T ss_pred eHHHHHHHHHhhhcceEEEEEEEchhhcCCEEECCCCCCeeEEEecCccc-CCCCceeEEeCCCCCHHHHHHHHhhccch
Confidence 0012223333322111134567787 899999999999999999999999 9999999 9999999999975
Q ss_pred --HHHcCCc--------eeeeecCCCCC--cc--c------cc-----------ccccccc---CCccccccCCCCCCCC
Q psy2890 361 --AKKHSLL--------IKQVINVKNKS--YS--D------KI-----------WKDWYID---KENCYCINSCKYNNMS 406 (893)
Q Consensus 361 --~~~~~l~--------~~~vi~~~~g~--~~--~------~~-----------~~~~~~~---~g~~~~~~s~~~~gl~ 406 (893)
|++|||| ++++|+. +|. .. + +. .+.+|+. +|. +. +|+|+|+.
T Consensus 344 ~~~~k~~l~~~~~~~l~~~~vi~~-~~~~~~~~~~~~~~~~i~~~~d~~~~~~~~~~~~~~~~~~G~--~~-~g~~~G~~ 419 (810)
T 1wkb_A 344 EILEKYDIDPRIVENITYISLIKL-EGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGI--FK-VPPYEGKP 419 (810)
T ss_dssp CCCTTCSCCCCCC-----------------CCTTCCSGGGTSCCCTTCSCTHHHHHHHHHHHHHSCE--EC-SGGGTTEE
T ss_pred hHHHHcCCChhhcccccceeeecc-CCccccchhhhhhhccCCCcchhhhhhhhhhhhhhccccCce--Ee-ccCcCCeE
Confidence 5788987 7888764 331 00 0 00 0112332 677 66 89999999
Q ss_pred HHHHHHHHHHHHHHcCCCC---------------ee-------eE----------------------e------------
Q psy2890 407 HKEATNAISTDLIKLGLGN---------------KK-------NI----------------------F------------ 430 (893)
Q Consensus 407 ~~~a~~~i~~~L~~~~~~~---------------~~-------~~----------------------~------------ 430 (893)
+.+|+++|++.|++.|.+. .. -+ +
T Consensus 420 v~~a~~~i~~~L~~~g~~~~~~~~~~~~~~~r~g~~vi~~~~~~qwF~~~~~~~~~~~~l~~~~~~~~~P~~~~~~~~~~ 499 (810)
T 1wkb_A 420 VQEVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAI 499 (810)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEEESSSCCBCTTSCBCEEEEEEEEEEECTTCHHHHHHHHHHHHTSEEESGGGHHHHHHH
T ss_pred HHHhHHHHHHHHHhCCCeeeEEecCCCCcCCCCCCEEEEEecCCceeEecChHHHHHHHHhhhcccEEECcchhchHHHH
Confidence 9999999999999998631 00 01 1
Q ss_pred --eecceeeccccccCCccCe---EEcCCCCeeecCCCCCCccCCCccCCCCcccccccccccccCCCCcc-ceecCCcc
Q psy2890 431 --RLRDWAISRQRYWGTPIPI---IYCDSCGSVPVPEKDLPVILPETCVPNNLLKENKKFLHVSCPKCNKL-AFRETDTM 504 (893)
Q Consensus 431 --~l~DW~ISRQr~WG~pIPi---~~~~~~~~v~v~~~~lpv~lp~~~~~g~~l~~~~~~~~~~c~~~g~~-~~re~d~~ 504 (893)
+++||||||||+||+|||+ |.|+... ++. +.. .+ .............+|.. -....+++
T Consensus 500 l~~l~Dw~ISRq~~WG~piP~d~~~~~~~~~-----~~~--iYv----~~----~~~~~~~~~~~~~~~~~~~~l~~~~~ 564 (810)
T 1wkb_A 500 IDWLDKKACARKIGLGTPLPWDPEWVIESLS-----DST--IYM----AY----YTISRHINKLRQEGKLDPEKLTPEFF 564 (810)
T ss_dssp HHHCCCEECEESSSBSCEETTEEEEEECTTT-----SSS--SHH----HH----HHHHHHHHHHHHTTCCCGGGCCHHHH
T ss_pred hhcccCccccccCCCCCcCCcCcceecccCC-----CCc--eee----eh----hhhHHHHHHhHhhcCCCHHHcCccce
Confidence 3679999999999999994 4443210 000 000 00 00000000000001110 11134677
Q ss_pred cccccc----c--chh-hhhcCCCccccCCChhhhhccCCceeeecchhhHHHHHHHHHHHHHHHHHhcCccCCCcc-ce
Q psy2890 505 DTFVDS----S--WYY-MRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPF-IR 576 (893)
Q Consensus 505 D~WfdS----s--w~~-~~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pf-k~ 576 (893)
|+||.+ + +.+ ...++|...-. -.++++++|+|+|+|++|+||+++|++|.+|++..+... .|+ ++
T Consensus 565 d~~~~~~~~~g~~~~~~~~sg~~~~~~~-~~~~~~~~~~p~Di~~~G~D~~~~H~~~~~~~~~~~~~~------~~~pk~ 637 (810)
T 1wkb_A 565 DYIFLEEFSEDKEKELEKKTGIPAEIIH-EMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFRE------EHWPKG 637 (810)
T ss_dssp HHHHHSCCCHHHHHHHHHHHSCCHHHHH-HHHHHHHHHCSCSEEEEEGGGTTTHHHHHHHHHHHHSCG------GGSCCE
T ss_pred eeeeccccccCccccchhhhCCCHHHHH-hhHHHHHhhCCceEEeecccccccHHHHHHHHHHHHcCc------cccccE
Confidence 777743 1 100 01233321000 002468899999999999999999999888777655432 344 99
Q ss_pred eeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceeccccccccCCCCccCccchhhhhCch
Q psy2890 577 LLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGAD 656 (893)
Q Consensus 577 l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yGaD 656 (893)
+++||||+ .+| +|||||+||+|+|.++|++||||
T Consensus 638 v~~~G~v~---------~~G-------------------------------------~KMSKS~GNvv~p~dli~~yGaD 671 (810)
T 1wkb_A 638 IAVNGFGT---------LEG-------------------------------------QKMSKSKGNVLNFIDAIEENGAD 671 (810)
T ss_dssp EEEECCEE---------ETT-------------------------------------BCCCTTTTCCCBHHHHHHHHCHH
T ss_pred EEEEeEEE---------eCC-------------------------------------eehhhcCCCcCCHHHHHHHcChH
Confidence 99999998 345 89999999999999999999999
Q ss_pred hHHHHHHhcCCCCCCcccChhhhhHHHHHHHHHHHHHHhhhhccccccccccccCCccccCCChhHHHHHHHHHHHHHHH
Q psy2890 657 STRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQI 736 (893)
Q Consensus 657 ~lRl~ll~~~~~~~d~~~~~~~i~~~~~~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v 736 (893)
++|||+|+++++++|++|+++.++++.++++|+||+++++.. .. .+ .....+..|+|++++++.+++++
T Consensus 672 alR~~ll~~~~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~-~~-~~---------~~~~~~~~d~~ll~~l~~~~~~v 740 (810)
T 1wkb_A 672 VVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELISQFAE-YE-VK---------GNVELKDIDRWMLHRLNKAIKET 740 (810)
T ss_dssp HHHHHHHHHCCTTCCEEECHHHHHHHHHHHHHHHHHHHHHHT-CC-CC---------SCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHh-cc-Cc---------ccccCCHHHHHHHHHHHHHHHHH
Confidence 999999998999999999999999999999999999988764 11 00 11235678999999999999999
Q ss_pred HHHHhcCCHHHHHHHH-HHHHHHHHHhhcccccCCCCCccc-HHHHHHHHHHHHHHhcccccchHHHHHHHhh
Q psy2890 737 NRDIKRIQYNTVVSGC-MKIFNILERINSETKFDNNKNTNN-DILLYEGMSIFLRVLNPIAPHITHILWKELK 807 (893)
Q Consensus 737 ~~~~e~~~f~~ai~~l-~~fvn~l~~~~k~~~~~~~~~~~~-~~~l~~~l~~ll~LL~P~~P~isEEIwq~L~ 807 (893)
+++|++|+|++|+..+ +.+++.++.|+..... ...++ +.+++++++.+++||+|||||+|||||+.||
T Consensus 741 ~~~~~~~~~~~a~~~~~~~l~~~~n~yi~~~k~---~~~~~~~~~l~~~l~~l~~lLaP~~P~~aEelw~~Lg 810 (810)
T 1wkb_A 741 TNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEG---RDDEAKRYVLRTLADVWVRLMAPFTPHICEELWEKLG 810 (810)
T ss_dssp HHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTTT---CCCHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHCC
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHHHHHHhcC---cchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcC
Confidence 9999999999999854 6888888887643110 11134 7899999999999999999999999999985
No 8
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=2.8e-84 Score=767.31 Aligned_cols=464 Identities=19% Similarity=0.274 Sum_probs=379.2
Q ss_pred CCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy2890 35 NGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQ 114 (893)
Q Consensus 35 ~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~ 114 (893)
.++||||+|||||||.||||||++++++|+++||+||+||+|+|++||||||+||+.+|+++|++|+++++++++.++++
T Consensus 8 ~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~ 87 (542)
T 3u1f_A 8 EKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKC 87 (542)
T ss_dssp CCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccC---------cccCCCcc
Q psy2890 115 LSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVING---------RGWRSDAI 185 (893)
Q Consensus 115 l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g---------~c~~~~~~ 185 (893)
+++|||++|| +++|+++.|.+.++++|.+|+++|+||++.++|+|||.|+|+|++.+|+++ .|++||.+
T Consensus 88 ~~~lgi~~D~--~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~~~~~g~~~~~~~~sg~~ 165 (542)
T 3u1f_A 88 FEQMDYSIDY--FIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDGVDKDGNPCKVSLESGHV 165 (542)
T ss_dssp HHHHTCCCSE--EEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTTCCB
T ss_pred HHHhCCccCc--CccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhccccccCccccccCCCCCc
Confidence 9999999996 678999999999999999999999999999999999999999999999763 47899999
Q ss_pred cEEEeeceeeEEecchHHHHHHHHHhhCCC--ChHHHHHHHHhhcccccceeeeeccccCCCCCCccccCCcEEEEEecc
Q psy2890 186 IEKKKIPMYYAKITNYAEELLEYVKKKLPY--WPKKVRLMQVNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTR 263 (893)
Q Consensus 186 v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~--~p~~~~~~~~~wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~ 263 (893)
|+.+.++||||++++|++.|.+++ +..+. +|+.
T Consensus 166 ve~~~~~~~f~~l~~~~~~l~~~~-~~~~~~~~P~~-------------------------------------------- 200 (542)
T 3u1f_A 166 VTWVSEENYMFRLSAFRERLLEWY-HANPGCIVPEF-------------------------------------------- 200 (542)
T ss_dssp EEEEEEEEEEECGGGGHHHHHHHH-HHCTTSEESHH--------------------------------------------
T ss_pred ceeeccccceecchhHHHHHHHHH-hhcccccCCch--------------------------------------------
Confidence 999999999999999999999887 32211 1111
Q ss_pred ccccccccEEEECCCChHHHHHhhchHHHHHHHHHHhhcCccccccccccccccceEEEcCCCCCeeeEEEecccccCCC
Q psy2890 264 IDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYKKNNNIESNNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSY 343 (893)
Q Consensus 264 p~tl~g~~~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipv~~~~~V~~~~~ 343 (893)
T Consensus 201 -------------------------------------------------------------------------------- 200 (542)
T 3u1f_A 201 -------------------------------------------------------------------------------- 200 (542)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCCCCHHHHHHHHHcCCceeeeecCCCCCccccccccccccCCccccccCCCCCCCCHHHHHHHHHHHHHHcCC
Q psy2890 344 GRAAIGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGL 423 (893)
Q Consensus 344 GTG~~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~~s~~~~gl~~~~a~~~i~~~L~~~~~ 423 (893)
.++.++.++++
T Consensus 201 ------------------------------------------------------------------~~~~~~~~~~~--- 211 (542)
T 3u1f_A 201 ------------------------------------------------------------------RRREVIRAVEK--- 211 (542)
T ss_dssp ------------------------------------------------------------------HHHHHHHHHHH---
T ss_pred ------------------------------------------------------------------hhHhHhhhhhc---
Confidence 11122222222
Q ss_pred CCeeeEeeecceeeccccc----cCCccCeEEcCCCCeeecCCCCCCccCCCccCCCCcccccccccccccCCCCcccee
Q psy2890 424 GNKKNIFRLRDWAISRQRY----WGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKENKKFLHVSCPKCNKLAFR 499 (893)
Q Consensus 424 ~~~~~~~~l~DW~ISRQr~----WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~g~~l~~~~~~~~~~c~~~g~~~~r 499 (893)
.++||||||||+ ||+|||..
T Consensus 212 -------~l~Dw~ISRq~~~~~~WGipiP~~------------------------------------------------- 235 (542)
T 3u1f_A 212 -------GLPDLSVSRARATLHNWAIPVPGN------------------------------------------------- 235 (542)
T ss_dssp -------CCCCEECEEEGGGGTTCSCEETTE-------------------------------------------------
T ss_pred -------cccccCccccccCcCCCCCccCCC-------------------------------------------------
Confidence 389999999998 99999942
Q ss_pred cCCcccccccccchhhhhc-CCC---c-cccCCChhhhhccCCceeeecchhhHHHHHHHHHHHHHHHHHhcCccCCCcc
Q psy2890 500 ETDTMDTFVDSSWYYMRYI-SPK---L-ENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPF 574 (893)
Q Consensus 500 e~d~~D~WfdSsw~~~~~~-~p~---~-~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pf 574 (893)
+..++++|||+...|.... .+. . .....+.......+|+|+|++|+|++.+|.. +|++.|...|+ +|+
T Consensus 236 ~~~~~~vw~da~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~p~d~~~~G~D~~~fh~~---~~~a~l~~~g~----~~~ 308 (542)
T 3u1f_A 236 PDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDILKFHAI---YWPAFLLSAGL----PLP 308 (542)
T ss_dssp EEEEECHHHHHHTHHHHHHTEEECTTSCEEEECSSGGGTTCCSCSEEEEEGGGHHHHHT---HHHHHHHHHTC----CCC
T ss_pred cCeeeeeeeccchhhhhhhhccccccCCcccccchhhhhcCCcceEEEecccccccccc---hhHHHHHhhcc----ccc
Confidence 1235778888754332211 100 0 0001111112234799999999999988865 57777777765 789
Q ss_pred ceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceeccccccccCCCCccCccchhhhhC
Q psy2890 575 IRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYG 654 (893)
Q Consensus 575 k~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yG 654 (893)
+.+++|||+. .+| +|||||+||+|+|.+++++||
T Consensus 309 ~~v~~hg~l~---------~~G-------------------------------------~KMSKSlGNvi~p~~~i~~yg 342 (542)
T 3u1f_A 309 KKIVAHGWWT---------KDR-------------------------------------KKISKSLGNVFDPVEKAEEFG 342 (542)
T ss_dssp SCEEEECCCE---------ETT-------------------------------------BCCBTTTTBCCCHHHHHHHHC
T ss_pred ceecccccee---------cCC-------------------------------------ceeccccCCCCChhHHHhhcC
Confidence 9999999986 455 899999999999999999999
Q ss_pred chhHHHHHHhcCCCCCCcccChhhhhHHHH--HHHHHHHHHHhhhhccccccccccccCCccccCCChhHHHHHHHHHHH
Q psy2890 655 ADSTRLFIIFSAPPEKNLEWSDIGIEGAYR--FLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKI 732 (893)
Q Consensus 655 aD~lRl~ll~~~~~~~d~~~~~~~i~~~~~--~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~ 732 (893)
||+|||||++.+++++|++|+++.+.+..+ +++++||++.++.....+... ..+....++..|+|++++++++
T Consensus 343 aD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~~l~n~l~N~~~r~~~~~~~~~~-----~~~~~~~~~~~d~~il~~l~~~ 417 (542)
T 3u1f_A 343 YDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKINVNG-----EWPSPAAYTEEDESLIQLIKDL 417 (542)
T ss_dssp HHHHHHHHHHHCCTTSCCEECHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTTS-----BCCCCCCCCHHHHHHHHHHHHH
T ss_pred chHHHHHHHhcCcccccccccHHHHHHHhhhHHHHHHHHHHHHHHHhhhcccC-----CCCccchhhHHHHHHHHHhhhh
Confidence 999999999999999999999999988654 789999999887651111110 1113445678999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccccC---CCCC---cccHHHHHHHHHHHHHHhcccccchHHHHHHHh
Q psy2890 733 LQQINRDIKRIQYNTVVSGCMKIFNILERINSETKFD---NNKN---TNNDILLYEGMSIFLRVLNPIAPHITHILWKEL 806 (893)
Q Consensus 733 i~~v~~~~e~~~f~~ai~~l~~fvn~l~~~~k~~~~~---~~~~---~~~~~~l~~~l~~ll~LL~P~~P~isEEIwq~L 806 (893)
+++++++|++|+|++|++.|++|++..|.|+.....| +.+. .+++.++.++++.+++||+|||||+|||||+.|
T Consensus 418 ~~~~~~~~~~~~~~~a~~~i~~~~~~~n~Y~~~~~pw~l~k~d~~~~~~~l~~~~~~l~~~~~ll~P~~P~~aeei~~~L 497 (542)
T 3u1f_A 418 PGTADHYYLIPDIQKAIIAVFDVLRAINAYVTDMAPWKLVKTDPERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDML 497 (542)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHC
Confidence 9999999999999999999999998888887443322 1111 244567778999999999999999999999999
Q ss_pred hc
Q psy2890 807 KY 808 (893)
Q Consensus 807 ~~ 808 (893)
+-
T Consensus 498 g~ 499 (542)
T 3u1f_A 498 GV 499 (542)
T ss_dssp TC
T ss_pred CC
Confidence 84
No 9
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=8.7e-82 Score=761.24 Aligned_cols=465 Identities=21% Similarity=0.328 Sum_probs=380.6
Q ss_pred CcEEEEecCCCCCCcCcchHHHh-HHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy2890 36 GKFYTCSMLPYPSGKLHMGHVRN-YTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQ 114 (893)
Q Consensus 36 ~~~~i~~~~P~~nG~lHiGH~~~-~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~ 114 (893)
++|||++|||||||.|||||+++ ++++|+++||+||+||+|+|++||||||+||+.+|+++|++|+++++++++.|+++
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~ 81 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKIT 81 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 47999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccch---------------------
Q psy2890 115 LSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQ--------------------- 173 (893)
Q Consensus 115 l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~e--------------------- 173 (893)
|++|||++|| +++|+++.|.+.++++|.+|+++|+||++.++|+|||.|+|+|+|.+
T Consensus 82 ~~~lgis~D~--~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~gtcP~c~~~~~~Gd~c~~~ 159 (722)
T 1rqg_A 82 FQRAKISFDF--FGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVC 159 (722)
T ss_dssp HHHHTCCCSE--EEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSSSCCSCCCTTTCSSS
T ss_pred HHHhCCCCCC--CeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhcccccCccCCccCCcchhhhc
Confidence 9999999985 78999999999999999999999999999999999999999998753
Q ss_pred --------hccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHHHHhhcccccceeeeeccccCCC
Q psy2890 174 --------VINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIGKSKGIFLAFPHNIKDP 245 (893)
Q Consensus 174 --------v~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~wi~~s~~~~i~f~~~~~~~ 245 (893)
+++++|++||.+++.+.++||||++++|++.|++++ +..+ ||+++++++.+||+.
T Consensus 160 G~~l~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~-~~~~-wp~~~~~~~~~wl~~--------------- 222 (722)
T 1rqg_A 160 GRPLTPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWI-EKQP-WKPNVKNMVLSWIEE--------------- 222 (722)
T ss_dssp CCCCCTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHH-HSSC-CCHHHHHHHHHHHTT---------------
T ss_pred ccccChhhccCCcccCCCcEeEEEEeccEEEEhHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHC---------------
Confidence 446788899999999999999999999999999999 5555 999999888888740
Q ss_pred CCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhchHHHHHHHHHHhhcCccccccccccccccceEEEcCC
Q psy2890 246 NKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYKKNNNIESNNLLKKSILTQLKVLHPL 325 (893)
Q Consensus 246 ~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~ 325 (893)
T Consensus 223 -------------------------------------------------------------------------------- 222 (722)
T 1rqg_A 223 -------------------------------------------------------------------------------- 222 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeeeEEEecccccCCCCCccccCCCCCHHHHHHHHHcCCceeeeecCCCCCccccccccccccCCccccccCCCCCCC
Q psy2890 326 TNQEIKVFVVNYVIEKSYGRAAIGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNM 405 (893)
Q Consensus 326 ~~~~ipv~~~~~V~~~~~GTG~~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~~s~~~~gl 405 (893)
T Consensus 223 -------------------------------------------------------------------------------- 222 (722)
T 1rqg_A 223 -------------------------------------------------------------------------------- 222 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHHHHHHHHcCCCCeeeEeeecceeeccccccCCccCeEEcCCCCeeecCCCCCCccCCCccCCCCcccccccc
Q psy2890 406 SHKEATNAISTDLIKLGLGNKKNIFRLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKENKKF 485 (893)
Q Consensus 406 ~~~~a~~~i~~~L~~~~~~~~~~~~~l~DW~ISRQr~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~g~~l~~~~~~ 485 (893)
+++|||||||++||+|||++++..
T Consensus 223 -------------------------gl~dw~ISR~~~WG~piP~~~~g~------------------------------- 246 (722)
T 1rqg_A 223 -------------------------GLEERAITRDLNWGIPVPLDEEDM------------------------------- 246 (722)
T ss_dssp -------------------------CCCCEECEECCSSSCBCSCCCSSS-------------------------------
T ss_pred -------------------------CCcccceeccccCccccCccccCC-------------------------------
Confidence 267999999999999999853110
Q ss_pred cccccCCCCccceecCCcccccccccchhhhhc--CCCccccCCChhhhhccCCc------eeeecchhhHHHHHHHHHH
Q psy2890 486 LHVSCPKCNKLAFRETDTMDTFVDSSWYYMRYI--SPKLENFMIDDNKINYWMPV------DQYIGGIEHAILHLLYARF 557 (893)
Q Consensus 486 ~~~~c~~~g~~~~re~d~~D~WfdSsw~~~~~~--~p~~~~~~~~~~~~~~~~Pv------D~~igG~D~~i~Hl~y~rf 557 (893)
+..++++|||+...|+... ++.... +.+.++.|+|. ++|++|+|++.+|.. +
T Consensus 247 --------------~~~~iyvW~da~i~y~~~~~~~~~~~g---~~~~~~~~w~~pd~~~~~~h~~GkDii~fH~~---~ 306 (722)
T 1rqg_A 247 --------------KGKVLYVWFEAPIGYISITIEHFKRIG---KPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAI---F 306 (722)
T ss_dssp --------------TTCEECHHHHGGGHHHHHHHHHHHHTT---CTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHT---H
T ss_pred --------------CCCEEEEEeccccchhhhHHHHHhhcC---CchHHHhccCCCCCCCeeEEEccccccccchh---h
Confidence 2358999999975443211 111000 11235545552 389999999888854 6
Q ss_pred HHHHHHHhcC------cc-CCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCccee
Q psy2890 558 WTKLMYNLGL------IK-FNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVII 630 (893)
Q Consensus 558 ~~~~l~~~g~------~~-~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~ 630 (893)
|+++|...+. +. ...| +++++||||+ .+|
T Consensus 307 wpA~l~~~~~~l~~d~~rg~~~P-k~v~~hG~v~---------~~G---------------------------------- 342 (722)
T 1rqg_A 307 WPAFLMAYGKYKDEEVEAEWNLP-YDIPANEYLT---------LEG---------------------------------- 342 (722)
T ss_dssp HHHHHHTTCCBCSSSCCBCBCCC-SBCCEECCEE---------ETT----------------------------------
T ss_pred hHHHHhccCCCcccccccCCCCC-CEEEEeeeEE---------eCC----------------------------------
Confidence 8887766552 11 2566 9999999998 345
Q ss_pred ccccccccCCCCccCccchhhhhCchhHHHHHHhcCCCCCCcccChhhhhHHHH--HHHHHHHHHHhhhhccc-cc-ccc
Q psy2890 631 GGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYR--FLNRVWNFSYILAPRII-NI-INL 706 (893)
Q Consensus 631 ~~~~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~~~--~l~rl~n~~~~~~~~~~-~~-~~~ 706 (893)
+|||||+||+|+|.++|++||+|++|||+++.+++++|++|+++.+....+ ++++++|++.++..... .. ..+
T Consensus 343 ---~KMSKS~GNvV~p~d~i~~ygaDalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~ 419 (722)
T 1rqg_A 343 ---KKFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFVHRALTFVNRYFDGVV 419 (722)
T ss_dssp ---EECBTTTTBSCBHHHHTTTSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHSTTBC
T ss_pred ---eeeeeeCCCcCCHHHHHHhcCchHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 899999999999999999999999999999998999999999998876443 44555555443321000 00 111
Q ss_pred ccccCCccccCCChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccccC---CCCCc---ccHHHH
Q psy2890 707 NIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIFNILERINSETKFD---NNKNT---NNDILL 780 (893)
Q Consensus 707 ~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fvn~l~~~~k~~~~~---~~~~~---~~~~~l 780 (893)
+....++..|+|++++++.+++++.++|++|+|++|++.+|+|++..+.|+.....| +.+.. .+..++
T Consensus 420 ------~~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~f~~A~~~i~~~~~~~n~Yi~~~kpw~~~k~~~~~~~~vl~~l 493 (722)
T 1rqg_A 420 ------PERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGNRYFDHKQPWKTAKEDKVRTGTTVNIS 493 (722)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHTTTCHHHHHHHHHHH
T ss_pred ------CCcccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCchhhcCCCHHHHHHHHHHH
Confidence 012235678999999999999999999999999999999999998888887543333 11111 345567
Q ss_pred HHHHHHHHHHhcccccchHHHHHHHhhc
Q psy2890 781 YEGMSIFLRVLNPIAPHITHILWKELKY 808 (893)
Q Consensus 781 ~~~l~~ll~LL~P~~P~isEEIwq~L~~ 808 (893)
+++++.+++||+|||||+|||||+.|+.
T Consensus 494 ~~~l~~l~~lL~P~~P~~aeei~~~L~~ 521 (722)
T 1rqg_A 494 LQIVKALGILLEPFLPDASEKIWHLLNL 521 (722)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHcCC
Confidence 8899999999999999999999999985
No 10
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=6.6e-80 Score=726.15 Aligned_cols=459 Identities=21% Similarity=0.337 Sum_probs=378.7
Q ss_pred CCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2890 34 PNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKK 113 (893)
Q Consensus 34 ~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~ 113 (893)
|++++++++|+|||||.|||||+++++++|+++||+||+||+|++++|||+||+||+.+|+++|.++.++++++.+.+++
T Consensus 10 ~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 89 (524)
T 2x1l_A 10 GSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQR 89 (524)
T ss_dssp -CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccC----ccc-CCCcccEE
Q psy2890 114 QLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVING----RGW-RSDAIIEK 188 (893)
Q Consensus 114 ~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g----~c~-~~~~~v~~ 188 (893)
++++|||++| .+++|+++.|.+.++++|.+|+++|+||++.++|+|||.|+|++++.|++.| .|+ +||.+++.
T Consensus 90 ~~~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v~~ 167 (524)
T 2x1l_A 90 LQEKLNISFD--RFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTW 167 (524)
T ss_dssp HHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBEEE
T ss_pred HHHHcCCcCC--CCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCCCCccccccCCcceE
Confidence 9999999988 8889999999999999999999999999999999999999999999999876 588 99999999
Q ss_pred EeeceeeEEecchHHHHHHHHHhhCCC--ChHHHHHHHHhhcccccceeeeeccccCCCCCCccccCCcEEEEEeccccc
Q psy2890 189 KKIPMYYAKITNYAEELLEYVKKKLPY--WPKKVRLMQVNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDI 266 (893)
Q Consensus 189 ~~~~~~~~~l~~~~~~l~~~~~~~~~~--~p~~~~~~~~~wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~t 266 (893)
+.++||||++++|++.|++++ +..+. +|+..+
T Consensus 168 ~~~~qwF~~l~~~~~~l~~~~-~~~~~~i~p~~~~--------------------------------------------- 201 (524)
T 2x1l_A 168 TEEQTYFFRLSAYTDRLLALY-EEHPEFIGPDARR--------------------------------------------- 201 (524)
T ss_dssp EEEEEEEECGGGSHHHHHHHH-HHCGGGEESHHHH---------------------------------------------
T ss_pred EecCCeEeeHHHHHHHHHHHH-HhCCCeeCCHHHH---------------------------------------------
Confidence 999999999999999999887 22110 011100
Q ss_pred cccccEEEECCCChHHHHHhhchHHHHHHHHHHhhcCccccccccccccccceEEEcCCCCCeeeEEEecccccCCCCCc
Q psy2890 267 IYGITFCVISPEHPLAIFAARNNLLLQKFILEYKKNNNIESNNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRA 346 (893)
Q Consensus 267 l~g~~~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipv~~~~~V~~~~~GTG 346 (893)
T Consensus 202 -------------------------------------------------------------------------------- 201 (524)
T 2x1l_A 202 -------------------------------------------------------------------------------- 201 (524)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCHHHHHHHHHcCCceeeeecCCCCCccccccccccccCCccccccCCCCCCCCHHHHHHHHHHHHHHcCCCCe
Q psy2890 347 AIGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNK 426 (893)
Q Consensus 347 ~~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~~s~~~~gl~~~~a~~~i~~~L~~~~~~~~ 426 (893)
+.+..++.
T Consensus 202 -----------------------------------------------------------------~~~~~~~~------- 209 (524)
T 2x1l_A 202 -----------------------------------------------------------------NEIVSFVS------- 209 (524)
T ss_dssp -----------------------------------------------------------------HHHHHHHT-------
T ss_pred -----------------------------------------------------------------HHHHHHHH-------
Confidence 01111111
Q ss_pred eeEeeecceeeccccc-cCCccCeEEcCCCCeeecCCCCCCccCCCccCCCCcccccccccccccCCCCccceecCCccc
Q psy2890 427 KNIFRLRDWAISRQRY-WGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKENKKFLHVSCPKCNKLAFRETDTMD 505 (893)
Q Consensus 427 ~~~~~l~DW~ISRQr~-WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~g~~l~~~~~~~~~~c~~~g~~~~re~d~~D 505 (893)
.+++||||||||+ ||+|||. . +.+|||
T Consensus 210 ---~~l~Dw~iSRqr~~WG~~iP~-~------------------------------------------------~~~~~y 237 (524)
T 2x1l_A 210 ---GGLKDLSISRTTFDWGVPVPD-H------------------------------------------------PDHVMY 237 (524)
T ss_dssp ---TCCCCEECEESSCCSSCEETT-E------------------------------------------------EEEEEC
T ss_pred ---cCCcccceECCCCCcCccCCC-C------------------------------------------------CCCEEE
Confidence 0388999999996 9999992 1 124899
Q ss_pred ccccccchh-hhhcCCCccccCCChhhhhccCCceeeecchhhHHHHHHHHHHHHHHHHHhcCccCCCccceeeecceEe
Q psy2890 506 TFVDSSWYY-MRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMIL 584 (893)
Q Consensus 506 ~WfdSsw~~-~~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pfk~l~~~G~v~ 584 (893)
|||||+|.| ...++|.+ +...+++|+|+|+|++|+||+.+|.. +|.+++...|. +||+++++||||+
T Consensus 238 vWfds~~~~~~~~g~p~~-----~~~~~~~~~p~di~~~G~D~~~fh~~---~~~a~l~~~g~----~~~~~v~~hG~v~ 305 (524)
T 2x1l_A 238 VWVDALTNYLTGVGFPDT-----ESESFRRYWPADLHMIGKDIIRFHTV---YWPAFLMSAGL----PLPKRIFAHGWLL 305 (524)
T ss_dssp HHHHHHTHHHHTTTTTCT-----TSHHHHHHCSCSEEEEEGGGHHHHHT---HHHHHHHHHTC----CCCSCEEEECCEE
T ss_pred EecCCchHHHHHcCCCCC-----chHHHHhhCCCeEEEEeechhHhHHH---HHHHHHHHCCC----CCCcEEEECcEEE
Confidence 999998654 44566653 23357788999999999999988865 67777777664 7899999999998
Q ss_pred ceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceeccccccccCCCCccCccchhhhhCchhHHHHHHh
Q psy2890 585 NKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIF 664 (893)
Q Consensus 585 ~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~ 664 (893)
.+| +|||||+||+|+|.++|++||+|++|||+++
T Consensus 306 ---------~~G-------------------------------------~KMSKS~GN~v~p~d~i~~~g~DalR~~ll~ 339 (524)
T 2x1l_A 306 ---------NRG-------------------------------------EKMSKSIGNVVDPVNLVDTFGLDQVRYFLLR 339 (524)
T ss_dssp ---------ECS-------------------------------------CSEETTTEESSCHHHHHHHHCHHHHHHHHHH
T ss_pred ---------eCC-------------------------------------cccCCcCCCCCCHHHHHHHcChHHHHHHHHh
Confidence 345 8999999999999999999999999999999
Q ss_pred cCCCCCCcccChhhhhHHHH--HHHHHHHHHHhhhhcccc--ccccccccCCccccCCChhHHHHHHHHHHHHHHHHHHH
Q psy2890 665 SAPPEKNLEWSDIGIEGAYR--FLNRVWNFSYILAPRIIN--IINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDI 740 (893)
Q Consensus 665 ~~~~~~d~~~~~~~i~~~~~--~l~rl~n~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~ 740 (893)
.+++++|++|+++.+.++.+ +.++++|++.++...... ...+ +.....+..|+|++++++.+++++.++|
T Consensus 340 ~~~~~~d~~fs~~~l~~~~~~~l~n~l~n~~~r~~~~~~~~~~~~~------~~~~~~~~~d~~l~~~l~~~~~~v~~a~ 413 (524)
T 2x1l_A 340 EVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAKNLGAAV------PDPGEFTDEDTALLAAADALLERVREHF 413 (524)
T ss_dssp HSCTTSCEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHSTTBC------CCCCCCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred cCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC------CCccccchhHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999988753 444555554433220000 0111 0122456789999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhhcccccC----CC---CCc---ccHHHHHHHHHHHHHHhcccccchHHHHHHHhhc
Q psy2890 741 KRIQYNTVVSGCMKIFNILERINSETKFD----NN---KNT---NNDILLYEGMSIFLRVLNPIAPHITHILWKELKY 808 (893)
Q Consensus 741 e~~~f~~ai~~l~~fvn~l~~~~k~~~~~----~~---~~~---~~~~~l~~~l~~ll~LL~P~~P~isEEIwq~L~~ 808 (893)
++|+|+.|++.+++|++.++.|+.....| +. +.. ++..++.++++.+++||+|||||+|||||+.|+.
T Consensus 414 ~~~~~~~a~~~l~~l~~~~n~y~~~~k~w~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~ll~P~~P~~aeei~~~L~~ 491 (524)
T 2x1l_A 414 DVPAMHLALEAIWSVLGAANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPESTAKLLDLLGQ 491 (524)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHHhcCChhhhcCccccCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCC
Confidence 99999999999999999888886443222 11 111 3456788999999999999999999999999985
No 11
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=4.6e-79 Score=721.28 Aligned_cols=473 Identities=20% Similarity=0.278 Sum_probs=388.9
Q ss_pred CcccCCCCCCCCCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHH
Q psy2890 23 AYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAK 102 (893)
Q Consensus 23 ~f~~~~~~~~~~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~ 102 (893)
.|.+....+ +++|||++|+|||||.|||||+|+++++|+++||+|++||+|++++|+|+||++|+.+|++.|.+|++
T Consensus 16 ~~~~~~~~~---~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~ 92 (564)
T 3kfl_A 16 TQGPGSMKK---QKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMD 92 (564)
T ss_dssp --------C---CCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHH
T ss_pred hcCCccccC---CCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHH
Confidence 455444333 67899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccC-----
Q psy2890 103 WTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVING----- 177 (893)
Q Consensus 103 ~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g----- 177 (893)
+++++.+.+++++++|||++| .+++|+++.|.+.++++|.+|+++|+||++...++||+.|+++|++.|+++|
T Consensus 93 ~~~~~~~~~~~~~~~lgi~~D--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~~~~g 170 (564)
T 3kfl_A 93 FTTSVSSEFKQCFQEMNYDMN--YFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVDRDG 170 (564)
T ss_dssp HHHHHHHHHHHHHHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEECTTS
T ss_pred HHHHHHHHHHHHHHHcCCCCC--ccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCCCCHHHhccCcCCCC
Confidence 999999999999999999999 6889999999999999999999999999999999999999999999999865
Q ss_pred -cc---cCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCC--ChHHHHHHHHhhcccccceeeeeccccCCCCCCccc
Q psy2890 178 -RG---WRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPY--WPKKVRLMQVNWIGKSKGIFLAFPHNIKDPNKNNKL 251 (893)
Q Consensus 178 -~c---~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~--~p~~~~~~~~~wi~~s~~~~i~f~~~~~~~~~~~~~ 251 (893)
.| -.||.+++.+.++||||++++|++.|.+++ +..+. +|+..++.
T Consensus 171 ~~c~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~-~~~~~~i~P~~~~~~---------------------------- 221 (564)
T 3kfl_A 171 KPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYF-HDHPNCIVPEFRRRE---------------------------- 221 (564)
T ss_dssp CEEEEETTTSCBCEEEEEEEEEECGGGGHHHHHHHH-HHCTTSEESHHHHHH----------------------------
T ss_pred CEeccccCCCCccEEEecceeEEEHHHHHHHHHHHH-HhCCCccCCHHHHHH----------------------------
Confidence 34 247999999999999999999999999988 33222 13322222
Q ss_pred cCCcEEEEEeccccccccccEEEECCCChHHHHHhhchHHHHHHHHHHhhcCccccccccccccccceEEEcCCCCCeee
Q psy2890 252 IQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYKKNNNIESNNLLKKSILTQLKVLHPLTNQEIK 331 (893)
Q Consensus 252 ~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ip 331 (893)
T Consensus 222 -------------------------------------------------------------------------------- 221 (564)
T 3kfl_A 222 -------------------------------------------------------------------------------- 221 (564)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecccccCCCCCccccCCCCCHHHHHHHHHcCCceeeeecCCCCCccccccccccccCCccccccCCCCCCCCHHHHH
Q psy2890 332 VFVVNYVIEKSYGRAAIGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEAT 411 (893)
Q Consensus 332 v~~~~~V~~~~~GTG~~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~~s~~~~gl~~~~a~ 411 (893)
T Consensus 222 -------------------------------------------------------------------------------- 221 (564)
T 3kfl_A 222 -------------------------------------------------------------------------------- 221 (564)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHcCCCCeeeEeeecceeecc----ccccCCccCeEEcCCCCeeecCCCCCCccCCCccCCCCcccccccccc
Q psy2890 412 NAISTDLIKLGLGNKKNIFRLRDWAISR----QRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKENKKFLH 487 (893)
Q Consensus 412 ~~i~~~L~~~~~~~~~~~~~l~DW~ISR----Qr~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~g~~l~~~~~~~~ 487 (893)
+..+|++ .++|||||| |++||+|||.
T Consensus 222 --~~~wl~~----------gl~D~~ISR~~~~~~~WGipiP~-------------------------------------- 251 (564)
T 3kfl_A 222 --VIKTVEK----------GLFDLSISRKRESVMNWSIPVPG-------------------------------------- 251 (564)
T ss_dssp --HHHHHHH----------CCCCEECEEEGGGGTTCSCEETT--------------------------------------
T ss_pred --HHHHHhC----------CCCCccccCcCCCCCCCCeecCC--------------------------------------
Confidence 2233332 388999999 8899999993
Q ss_pred cccCCCCccceecCCccccccccc-chhhhhcC-CCccccCCChhhh--hccCCceeeecchhhHHHHHHHHHHHHHHHH
Q psy2890 488 VSCPKCNKLAFRETDTMDTFVDSS-WYYMRYIS-PKLENFMIDDNKI--NYWMPVDQYIGGIEHAILHLLYARFWTKLMY 563 (893)
Q Consensus 488 ~~c~~~g~~~~re~d~~D~WfdSs-w~~~~~~~-p~~~~~~~~~~~~--~~~~PvD~~igG~D~~i~Hl~y~rf~~~~l~ 563 (893)
.+.+||||||||+ +|++..++ |..+........+ ++++|+|+|+.|+||..+|. .||+++|.
T Consensus 252 -----------~~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv~~~GkDii~FH~---~~wpa~L~ 317 (564)
T 3kfl_A 252 -----------DERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDILKFHA---IYWPAFLM 317 (564)
T ss_dssp -----------EEEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTTTTCCSCSEEEEEGGGHHHHH---THHHHHHH
T ss_pred -----------CCCCEEEEeccCcHHHHHHhCccccccccccchhcchhhhcCccceEEEeecccchHH---HHHHHHHH
Confidence 0346899999997 55555555 5421100000125 67889999999999988885 47888888
Q ss_pred HhcCccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceeccccccccCCCCc
Q psy2890 564 NLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNG 643 (893)
Q Consensus 564 ~~g~~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSKSkgN~ 643 (893)
.+|+ +||++|++||||. .+| +|||||+||+
T Consensus 318 a~g~----~~~~~v~~hg~v~---------~~G-------------------------------------~KMSKS~GNv 347 (564)
T 3kfl_A 318 SAEL----PLPERLVSHGWWT---------KDH-------------------------------------KKISKSLGNA 347 (564)
T ss_dssp HTTC----CCCSCEEEECCEE---------ETT-------------------------------------EECCTTTTCC
T ss_pred hCCC----CCCcEEEEcccEe---------eCC-------------------------------------ccccccCCCC
Confidence 8875 7999999999995 556 8999999999
Q ss_pred cCccchhhhhCchhHHHHHHhcCCCCCCcccChhhhhHHHH--HHHHHHHHHHhhhhccccccccccccCCccccCCChh
Q psy2890 644 IDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYR--FLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNNN 721 (893)
Q Consensus 644 i~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~~~--~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (893)
|+|.+++++||+|++|||+++.+++++|++|+++.+.+..+ ++++++|++.++.....+.... .+....++..
T Consensus 348 V~p~d~i~~~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~g~-----~p~~~~~~~~ 422 (564)
T 3kfl_A 348 FDPVEKAKEFGIDALKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKINVNGM-----WPEPAEYSES 422 (564)
T ss_dssp CCHHHHHHHHCHHHHHHHHHHHCCSSCCEECCHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTTSB-----CCCCCCCCHH
T ss_pred CCHHHHHHHcCcHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----CCCCCCCCHH
Confidence 99999999999999999999988999999999999988654 8899999988765411111111 0122345788
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccccC---CCCC---cccHHHHHHHHHHHHHHhcccc
Q psy2890 722 QKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIFNILERINSETKFD---NNKN---TNNDILLYEGMSIFLRVLNPIA 795 (893)
Q Consensus 722 D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fvn~l~~~~k~~~~~---~~~~---~~~~~~l~~~l~~ll~LL~P~~ 795 (893)
|+|++++++.+++++.++|++|+|++|++.+++|++..++|+.....| +.+. .++..++.++++.+++||+|||
T Consensus 423 d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~i~~l~~~~n~Y~~~~kpW~l~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~ 502 (564)
T 3kfl_A 423 DKTLIASLNNLAGTVDHYYCLPDIQHALIAIFDVLRSLNAYVTENAPWKLVKMDTARLGTVLYVTMEGLRICTMFLQPVM 502 (564)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 999999999999999999999999999999999999888887543322 1111 2456788999999999999999
Q ss_pred cchHHHHHHHhhc
Q psy2890 796 PHITHILWKELKY 808 (893)
Q Consensus 796 P~isEEIwq~L~~ 808 (893)
||+|||||+.|+.
T Consensus 503 P~~ae~i~~~Lg~ 515 (564)
T 3kfl_A 503 PQKAKEIMDALGV 515 (564)
T ss_dssp HHHHHHHHHHHTC
T ss_pred hHHHHHHHHHcCC
Confidence 9999999999985
No 12
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=9.3e-79 Score=716.85 Aligned_cols=458 Identities=22% Similarity=0.308 Sum_probs=375.4
Q ss_pred CCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy2890 35 NGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQ 114 (893)
Q Consensus 35 ~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~ 114 (893)
+++|||++|+|||||.|||||+|+++++|+++||+|++||+|.+++|+|+||++|+.+|.+.|.+|.++++++.+.++++
T Consensus 24 ~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~ 103 (536)
T 4dlp_A 24 REKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRM 103 (536)
T ss_dssp CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhcc---C-cccCCCcccEEEe
Q psy2890 115 LSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVIN---G-RGWRSDAIIEKKK 190 (893)
Q Consensus 115 l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~---g-~c~~~~~~v~~~~ 190 (893)
|++|||++| .+++|+++.|.+.++++|.+|+++|+||++.++++||+.|++++++.+++. | .|++||.+++.+.
T Consensus 104 l~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~~~g~~c~~~g~~~e~~~ 181 (536)
T 4dlp_A 104 AEVLNSSND--DYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVRADGVRYGPQGTPVEWVE 181 (536)
T ss_dssp HHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEECTTSCEECTTSSBCEEEE
T ss_pred HHHcCCCCC--cceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcCCCCCcccCCCCcceEEe
Confidence 999999999 788999999999999999999999999999999999999999999999975 4 5999999999999
Q ss_pred eceeeEEecchHHHHHHHHHhhCCCC--hHHHHHHHHhhcccccceeeeeccccCCCCCCccccCCcEEEEEeccccccc
Q psy2890 191 IPMYYAKITNYAEELLEYVKKKLPYW--PKKVRLMQVNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIY 268 (893)
Q Consensus 191 ~~~~~~~l~~~~~~l~~~~~~~~~~~--p~~~~~~~~~wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~ 268 (893)
++||||++++|++.|.+++ +..+.| |+..++...+
T Consensus 182 ~~~~f~~l~~~~~~l~~~~-~~~~~~i~P~~~~~~~~~------------------------------------------ 218 (536)
T 4dlp_A 182 EESYFFRLSAYQDKLLDLY-ENNPGFIMPAERRNEIVS------------------------------------------ 218 (536)
T ss_dssp EEEEEECGGGGHHHHHHHH-HHCTTSEESHHHHHHHHH------------------------------------------
T ss_pred ccceEEecHHHHHHHHHHH-HhCCCccCcHHHHHHHHH------------------------------------------
Confidence 9999999999999999988 443321 3332222222
Q ss_pred cccEEEECCCChHHHHHhhchHHHHHHHHHHhhcCccccccccccccccceEEEcCCCCCeeeEEEecccccCCCCCccc
Q psy2890 269 GITFCVISPEHPLAIFAARNNLLLQKFILEYKKNNNIESNNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAAI 348 (893)
Q Consensus 269 g~~~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipv~~~~~V~~~~~GTG~~ 348 (893)
T Consensus 219 -------------------------------------------------------------------------------- 218 (536)
T 4dlp_A 219 -------------------------------------------------------------------------------- 218 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCHHHHHHHHHcCCceeeeecCCCCCccccccccccccCCccccccCCCCCCCCHHHHHHHHHHHHHHcCCCCeee
Q psy2890 349 GVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNKKN 428 (893)
Q Consensus 349 ~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~~s~~~~gl~~~~a~~~i~~~L~~~~~~~~~~ 428 (893)
+|++
T Consensus 219 --------------------------------------------------------------------~l~~-------- 222 (536)
T 4dlp_A 219 --------------------------------------------------------------------FVKS-------- 222 (536)
T ss_dssp --------------------------------------------------------------------HHHT--------
T ss_pred --------------------------------------------------------------------HHhc--------
Confidence 2221
Q ss_pred Eeeecceeecccc-ccCCccCeEEcCCCCeeecCCCCCCccCCCccCCCCcccccccccccccCCCCccceecCCccccc
Q psy2890 429 IFRLRDWAISRQR-YWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKENKKFLHVSCPKCNKLAFRETDTMDTF 507 (893)
Q Consensus 429 ~~~l~DW~ISRQr-~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~g~~l~~~~~~~~~~c~~~g~~~~re~d~~D~W 507 (893)
.++|||||||| +||+|||. + +.+|||||
T Consensus 223 --~l~D~~ISR~~~~WGipiP~----~---------------------------------------------~~~v~yvW 251 (536)
T 4dlp_A 223 --GLKDLSISRTTFDWGIPVPG----D---------------------------------------------EKHVMYVW 251 (536)
T ss_dssp --CCCCEECEEC--CCSCBCTT----C---------------------------------------------TTSEECHH
T ss_pred --CCCccCCccCCCcCCeeCCC----C---------------------------------------------CCCceEEe
Confidence 37899999997 59999993 0 24689999
Q ss_pred cccc-chhhhhcCCCccccCCChhhhhccCCceeeecchhhHHHHHHHHHHHHHHHHHhcCccCCCccceeeecceEece
Q psy2890 508 VDSS-WYYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNK 586 (893)
Q Consensus 508 fdSs-w~~~~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pfk~l~~~G~v~~~ 586 (893)
|||+ +|+...++|.. ...+++|+|.|+++.|+||..+|.+ ||+.+|..+|+ .||++|++||||+
T Consensus 252 fda~~~y~s~~~~~~~------~~~~~~~~p~dv~~~G~D~~~fh~~---~~~a~l~a~g~----~~~~~v~~hg~v~-- 316 (536)
T 4dlp_A 252 VDALTNYITALGYPDT------TDERWAYWPANAHIIGKDISRFHAV---YWPAFLMSAQL----PLPKRVFAHGFLF-- 316 (536)
T ss_dssp HHHHHHHHHTTTTTCT------TSGGGGGCSCSEEEEEGGGHHHHHT---HHHHHHHHTTC----CCCSCEEEECCEE--
T ss_pred eCCcHHHHHhcCCCCC------chHHHhhCCcceEEeechHHHHHHH---HHHHHHHHCCC----CCCcEEEeeeeEe--
Confidence 9997 56666677753 3458889999999999999888854 78888887765 7899999999997
Q ss_pred eeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceeccccccccCCCCccCccchhhhhCchhHHHHHHhcC
Q psy2890 587 TYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSA 666 (893)
Q Consensus 587 ~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~~~ 666 (893)
.+| +|||||+||+|+|.+++++||+|++|||+++.+
T Consensus 317 -------~~G-------------------------------------~KMSKS~GNvi~p~d~i~~~GaDalR~~ll~~~ 352 (536)
T 4dlp_A 317 -------NRG-------------------------------------EKMSKSVGNVIDPFELVERYGLDQLRYFLMREV 352 (536)
T ss_dssp -------C-------------------------------------------------CCHHHHHHHHCHHHHHHHHHHHS
T ss_pred -------eCC-------------------------------------ceecccCCCCCCHHHHHHHcCcHHHHHHHHhcC
Confidence 455 899999999999999999999999999999988
Q ss_pred CCCCCcccChhhhhHHH--HHHHHHHHHHHhhhhccc-cccccccccCCccccCCChhHHHHHHHHHHHHHHHHHHHhcC
Q psy2890 667 PPEKNLEWSDIGIEGAY--RFLNRVWNFSYILAPRII-NIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRI 743 (893)
Q Consensus 667 ~~~~d~~~~~~~i~~~~--~~l~rl~n~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~ 743 (893)
++++|++|+++.+.+.. +++++++|++.++..... ...... +....++..|+|++++++++++++.++|++|
T Consensus 353 ~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~~~~~-----p~~~~~~~~d~~ll~~l~~~~~~v~~a~~~~ 427 (536)
T 4dlp_A 353 PFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAKNCEGKV-----PQPGAFSEADKAILDQADAALETARKAMDDQ 427 (536)
T ss_dssp CTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBC-----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-----CCcccCCHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999998754 367788887765443111 111110 1223467899999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhhcccccC---CCCC---cccHHHHHHHHHHHHHHhcccccchHHHHHHHhhc
Q psy2890 744 QYNTVVSGCMKIFNILERINSETKFD---NNKN---TNNDILLYEGMSIFLRVLNPIAPHITHILWKELKY 808 (893)
Q Consensus 744 ~f~~ai~~l~~fvn~l~~~~k~~~~~---~~~~---~~~~~~l~~~l~~ll~LL~P~~P~isEEIwq~L~~ 808 (893)
+|+.|++.+++|++..+.|+.....| +.+. .++..++.++++.+++||+|||||+|||||+.|+.
T Consensus 428 ~~~~a~~~l~~l~~~~n~Y~~~~k~w~l~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aeei~~~L~~ 498 (536)
T 4dlp_A 428 ALHLALGAIFAVVAEANRYFAGQEPWALRKTDPARMGTVLYVTAEVLRRVGIMVQPFIPQSAEKLLDILAV 498 (536)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHcCC
Confidence 99999999999998888887543322 1111 24567888999999999999999999999999985
No 13
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=7.6e-79 Score=713.86 Aligned_cols=452 Identities=20% Similarity=0.304 Sum_probs=374.1
Q ss_pred CCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy2890 35 NGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQ 114 (893)
Q Consensus 35 ~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~ 114 (893)
+++|||+.|+|||||.|||||+|+++++|+++||+||+||+|++++|||+||+||+.+|+++|.++.++++++++.++++
T Consensus 2 ~~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 81 (500)
T 2d5b_A 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRA 81 (500)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeecee
Q psy2890 115 LSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMY 194 (893)
Q Consensus 115 l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~ 194 (893)
+++||+++| .+++|+++.|.+.++++|.+|+++|+||++.+.++|||.|+|++++.++++|.|++||.+++.+.+.||
T Consensus 82 ~~~lgi~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~~g~c~~~~~~v~~~~~~~w 159 (500)
T 2d5b_A 82 WDLLGIAYD--DFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNY 159 (500)
T ss_dssp HHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSBTTBCTTTCSBCEEEEEEEE
T ss_pred HHHhCCcCC--CCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhccCCcCCCCCCeeeEEecCce
Confidence 999999988 688999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecchHHHHHHHHHhhCCCC--hHHHHHHHHhhcccccceeeeeccccCCCCCCccccCCcEEEEEeccccccccccE
Q psy2890 195 YAKITNYAEELLEYVKKKLPYW--PKKVRLMQVNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITF 272 (893)
Q Consensus 195 ~~~l~~~~~~l~~~~~~~~~~~--p~~~~~~~~~wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~ 272 (893)
||++++|++.|.+++ ++.++| |+..
T Consensus 160 f~~l~~~~~~l~~~~-~~~~~~~~p~~~---------------------------------------------------- 186 (500)
T 2d5b_A 160 FFRMEKYRPWLQEYI-QENPDLIRPEGY---------------------------------------------------- 186 (500)
T ss_dssp EECGGGGHHHHHHHH-HTCTTSEESHHH----------------------------------------------------
T ss_pred EEEcHHHHHHHHHHH-HhCCCeeCCHHH----------------------------------------------------
Confidence 999999999999888 322110 1100
Q ss_pred EEECCCChHHHHHhhchHHHHHHHHHHhhcCccccccccccccccceEEEcCCCCCeeeEEEecccccCCCCCccccCCC
Q psy2890 273 CVISPEHPLAIFAARNNLLLQKFILEYKKNNNIESNNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAAIGVPA 352 (893)
Q Consensus 273 v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipv~~~~~V~~~~~GTG~~~~Pa 352 (893)
T Consensus 187 -------------------------------------------------------------------------------- 186 (500)
T 2d5b_A 187 -------------------------------------------------------------------------------- 186 (500)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCHHHHHHHHHcCCceeeeecCCCCCccccccccccccCCccccccCCCCCCCCHHHHHHHHHHHHHHcCCCCeeeEeee
Q psy2890 353 HNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNKKNIFRL 432 (893)
Q Consensus 353 h~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~~s~~~~gl~~~~a~~~i~~~L~~~~~~~~~~~~~l 432 (893)
++.+..++++ ++
T Consensus 187 ----------------------------------------------------------~~~~~~~l~~----------~l 198 (500)
T 2d5b_A 187 ----------------------------------------------------------RNEVLAMLAE----------PI 198 (500)
T ss_dssp ----------------------------------------------------------HHHHHHHHTS----------CC
T ss_pred ----------------------------------------------------------HHHHHHHHhc----------CC
Confidence 0111111110 47
Q ss_pred cceeecc--cc-ccCCccCeEEcCCCCeeecCCCCCCccCCCccCCCCcccccccccccccCCCCccceecCCccccccc
Q psy2890 433 RDWAISR--QR-YWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKENKKFLHVSCPKCNKLAFRETDTMDTFVD 509 (893)
Q Consensus 433 ~DW~ISR--Qr-~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~g~~l~~~~~~~~~~c~~~g~~~~re~d~~D~Wfd 509 (893)
+|||||| || .||+|||. + +.+|+|||||
T Consensus 199 ~Dw~iSRp~~~~~WG~piP~--~-----------------------------------------------~~~v~~vWfd 229 (500)
T 2d5b_A 199 GDLSISRPKSRVPWGIPLPW--D-----------------------------------------------ENHVTFVWFD 229 (500)
T ss_dssp CCEECEEETTTCCSSCEETT--E-----------------------------------------------EEEEECHHHH
T ss_pred CCeecccccccccCccccCC--C-----------------------------------------------CCCeeEEccc
Confidence 8999999 88 59999994 0 2358999999
Q ss_pred ccc-hhhhhcCCCccccCCChhhhhccCCceeeecchhhHHHHHHHHHHHHHHHHHhcCccCCCccceeeecceEeceee
Q psy2890 510 SSW-YYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTY 588 (893)
Q Consensus 510 Ssw-~~~~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pfk~l~~~G~v~~~~~ 588 (893)
|++ |+...++|.+ .+ +++++|+|+|++|+||+.+|.. ||.+++..+|. +||+++++||||+
T Consensus 230 s~~~y~~~~g~~~~------~~-~~~~~p~di~~~G~D~~~fh~~---~~~a~~~~~g~----~~~~~v~~~G~v~---- 291 (500)
T 2d5b_A 230 ALLNYVSALDYPEG------EA-YRTFWPHAWHLIGKDILKPHAV---FWPTMLKAAGI----PMYRHLNVGGFLL---- 291 (500)
T ss_dssp HHTHHHHTTTTTTC------HH-HHHHGGGEEEEEEGGGHHHHHT---HHHHHHHHHTC----CCCSEEEEECCEE----
T ss_pred cchhhHHHcCCCCC------ch-HHHcCCCeEEEEeechhhhHHH---HHHHHHHHcCC----CCCcEEEECceEE----
Confidence 974 5444466642 22 6777899999999999998865 67777766664 7899999999998
Q ss_pred eecccCCCCccccCCCcccccccCCCCccceeeecCCCcceeccccccccCCCCccCccchhhhhCchhHHHHHHhcCCC
Q psy2890 589 YRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPP 668 (893)
Q Consensus 589 ~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~~~~~ 668 (893)
+ .+| +|||||+||+|+|.+++++||+|++|||+++.+++
T Consensus 292 ---~-~~G-------------------------------------~KMSKS~GN~i~p~d~i~~~g~DalR~~ll~~~~~ 330 (500)
T 2d5b_A 292 ---G-PDG-------------------------------------RKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPY 330 (500)
T ss_dssp ---C-TTS-------------------------------------SCCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHSCT
T ss_pred ---e-CCC-------------------------------------CcccccCCCCCCHHHHHHhcCcHHHHHHHHhcCCc
Confidence 3 466 89999999999999999999999999999988899
Q ss_pred CCCcccChhhhhHHH--HHHHHHHHHHHhhhhcccc--ccccccccCCccccCCChhHHHHHHHHHHHHHHHHHHHhcCC
Q psy2890 669 EKNLEWSDIGIEGAY--RFLNRVWNFSYILAPRIIN--IINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQ 744 (893)
Q Consensus 669 ~~d~~~~~~~i~~~~--~~l~rl~n~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~ 744 (893)
++|++|+++.+.++. ++.+.++|++.++...... ...+ . ...++|++++++++++++.++|++|+
T Consensus 331 ~~d~~fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~-------~----~~~~~~l~~~l~~~~~~v~~a~~~~~ 399 (500)
T 2d5b_A 331 GQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFRFAEGRI-------P----EPVAGEELAEGTGLAGRLRPLVRELK 399 (500)
T ss_dssp TSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBC-------C----CCCCCGGGGGGGGHHHHHHHHHHTTC
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-------C----chhHHHHHHHHHHHHHHHHHHHHccC
Confidence 999999999998764 3455666665443220100 0011 1 01147899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccC---CCC---CcccHHHHHHHHHHHHHHhcccccchHHHHHHHhhc
Q psy2890 745 YNTVVSGCMKIFNILERINSETKFD---NNK---NTNNDILLYEGMSIFLRVLNPIAPHITHILWKELKY 808 (893)
Q Consensus 745 f~~ai~~l~~fvn~l~~~~k~~~~~---~~~---~~~~~~~l~~~l~~ll~LL~P~~P~isEEIwq~L~~ 808 (893)
|+.|++.+++|++.++.|+.....| +.+ ...+..++.++++.+++||+|||||+|||||+.|+.
T Consensus 400 ~~~a~~~l~~l~~~~n~y~~~~k~w~~~~~~~~~~~~~~~~l~~~l~~~~~ll~P~~P~~aeei~~~l~~ 469 (500)
T 2d5b_A 400 FHVALEEAMAYVKALNRYINEKKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGL 469 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhhccCcHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHcCC
Confidence 9999999999999888876432222 101 113566788899999999999999999999999986
No 14
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=5e-78 Score=705.69 Aligned_cols=452 Identities=21% Similarity=0.346 Sum_probs=338.6
Q ss_pred CCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy2890 35 NGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQ 114 (893)
Q Consensus 35 ~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~ 114 (893)
+++|||+.|+|||||.|||||+++++++|+++||+||+||+|++++||||||+||+.+|+++|.++.++++++++.++++
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 83 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKL 83 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhcc-CcccCCCcccEEEeece
Q psy2890 115 LSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVIN-GRGWRSDAIIEKKKIPM 193 (893)
Q Consensus 115 l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~-g~c~~~~~~v~~~~~~~ 193 (893)
+++|||++| .+++|+++.|.+.++++|.+|+++|+||++.++++||+.|+|++++.|+.+ |.|++||.+++.+...|
T Consensus 84 ~~~lgi~~d--~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 161 (497)
T 2csx_A 84 WEFLKIEYT--KFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEPS 161 (497)
T ss_dssp HHHTTCCCS--EEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC---------------------------------CCEE
T ss_pred HHHhCCcCC--CCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhccCCCCCCCCCCCeEEecCc
Confidence 999999877 688999999999999999999999999999999999999999999999988 99999999999999999
Q ss_pred eeEEecchHHHHHHHHHhhCCCChHHHHHHHHhhcccccceeeeeccccCCCCCCccccCCcEEEEEeccccccccccEE
Q psy2890 194 YYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFC 273 (893)
Q Consensus 194 ~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~wi~~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v 273 (893)
|||++++|+++|++++ +..+.+
T Consensus 162 wf~~l~~~~~~l~~~~-~~~~~~--------------------------------------------------------- 183 (497)
T 2csx_A 162 YFFRLSKYQDKLLELY-EKNPEF--------------------------------------------------------- 183 (497)
T ss_dssp EEECTTSSHHHHHHHH-HHCTTS---------------------------------------------------------
T ss_pred eEEEcHHHHHHHHHHH-HhCCCe---------------------------------------------------------
Confidence 9999999999999888 322100
Q ss_pred EECCCChHHHHHhhchHHHHHHHHHHhhcCccccccccccccccceEEEcCCCCCeeeEEEecccccCCCCCccccCCCC
Q psy2890 274 VISPEHPLAIFAARNNLLLQKFILEYKKNNNIESNNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAAIGVPAH 353 (893)
Q Consensus 274 ~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipv~~~~~V~~~~~GTG~~~~Pah 353 (893)
+.|+
T Consensus 184 -~~p~--------------------------------------------------------------------------- 187 (497)
T 2csx_A 184 -IQPD--------------------------------------------------------------------------- 187 (497)
T ss_dssp -BCSH---------------------------------------------------------------------------
T ss_pred -eCcH---------------------------------------------------------------------------
Confidence 0000
Q ss_pred CHHHHHHHHHcCCceeeeecCCCCCccccccccccccCCccccccCCCCCCCCHHHHHHHHHHHHHHcCCCCeeeEeeec
Q psy2890 354 NKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNKKNIFRLR 433 (893)
Q Consensus 354 ~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~~s~~~~gl~~~~a~~~i~~~L~~~~~~~~~~~~~l~ 433 (893)
..++.+.+++++ +++
T Consensus 188 -------------------------------------------------------~~~~~~~~~l~~----------~~~ 202 (497)
T 2csx_A 188 -------------------------------------------------------YRRNEIISFVKQ----------GLK 202 (497)
T ss_dssp -------------------------------------------------------HHHHHHHHHHHH----------CCC
T ss_pred -------------------------------------------------------HHHHHHHHHHhc----------CCc
Confidence 001111122211 378
Q ss_pred ceeecc--cc-ccCCccCeEEcCCCCeeecCCCCCCccCCCccCCCCcccccccccccccCCCCccceecCCcccccccc
Q psy2890 434 DWAISR--QR-YWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKENKKFLHVSCPKCNKLAFRETDTMDTFVDS 510 (893)
Q Consensus 434 DW~ISR--Qr-~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~g~~l~~~~~~~~~~c~~~g~~~~re~d~~D~WfdS 510 (893)
|||||| || .||+|||+. +.+++||||||
T Consensus 203 Dw~isR~~~~~~WG~~iP~~-------------------------------------------------~~~~i~vW~ds 233 (497)
T 2csx_A 203 DLSVTRPRSRVKWGIPVPFD-------------------------------------------------PEHTIYVWFDA 233 (497)
T ss_dssp CEECEEETTTCCSSEEETTE-------------------------------------------------EEEEECSHHHH
T ss_pred cccccccCCCCCCceecCCC-------------------------------------------------CCceEEEeccc
Confidence 999999 88 499999941 13478999999
Q ss_pred cchhhhhcCCCccccCCChhhhhccCCceeeecchhhHHHHHHHHHHHHHHHHHhcCccCCCccceeeecceEeceeeee
Q psy2890 511 SWYYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYYR 590 (893)
Q Consensus 511 sw~~~~~~~p~~~~~~~~~~~~~~~~PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pfk~l~~~G~v~~~~~~~ 590 (893)
.+.|..-. +. ..+ ++ +|+|+|++|+||+.+|.. ||++.+...|. +||+++++||||+
T Consensus 234 ~~~~~s~~-~~-------~~~-~~-~p~di~~~G~D~~~~H~~---~~~a~l~~~g~----~~~~~~~~~G~v~------ 290 (497)
T 2csx_A 234 LFNYISAL-ED-------KVE-IY-WPADLHLVGKDILRFHTV---YWPAFLMSLGY----ELPKKVFAHGWWT------ 290 (497)
T ss_dssp HTHHHHTT-TT-------THH-HH-CSCSCEEEEGGGHHHHHT---HHHHHHHHHTC----CCCSCEEEECCEE------
T ss_pred chhhcccC-CC-------cch-hh-CCceEEEeecchhHhHHH---HHHHHHHHcCC----CCCcEEEECcEEE------
Confidence 86555432 21 111 34 499999999999998865 67777766664 7999999999998
Q ss_pred cccCCCCccccCCCcccccccCCCCccceeeecCCCcceeccccccccCCCCccCccchhhhhCchhHHHHHHhcCCCCC
Q psy2890 591 IENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEK 670 (893)
Q Consensus 591 ~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~~~~~~~ 670 (893)
.+| +|||||+||+|+|.+++++||+|++|||+++.+++++
T Consensus 291 ---~~G-------------------------------------~KMSKS~GN~i~~~dli~~~g~DalR~~ll~~~~~~~ 330 (497)
T 2csx_A 291 ---VEG-------------------------------------KKMSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFGQ 330 (497)
T ss_dssp ---SSS-------------------------------------SBCCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTS
T ss_pred ---eCC-------------------------------------ceeCCcCCCCCCHHHHHHHCCcHHHHHHHHhcCCccc
Confidence 455 8999999999999999999999999999998889999
Q ss_pred CcccChhhhhHHHH--HHHHHHHHHHhhhhccccccccccccCCccccCCChhHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q psy2890 671 NLEWSDIGIEGAYR--FLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTV 748 (893)
Q Consensus 671 d~~~~~~~i~~~~~--~l~rl~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~a 748 (893)
|++|+++.+.++.+ ++++++|++.++......... .... +..|+|++++++.+++++.++|++|+|+.|
T Consensus 331 d~~fs~~~l~~~~~~~l~~~l~n~~~R~~~~~~~~~~--------~~~~-~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a 401 (497)
T 2csx_A 331 DGDFSKKAILNRINGELANEIGNLYSRVVNMAHKFLG--------GEVS-GARDEEYAKIAQESIKNYENYMEKVNFYKA 401 (497)
T ss_dssp CEECCHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHST--------TCBC-CCCCTTHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCCC-chhHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 99999999988643 334444444333220000000 0001 356899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccC---C-CCC---cccHHHHHHHHHHHHHHhcccccchHHHHHHHhhc
Q psy2890 749 VSGCMKIFNILERINSETKFD---N-NKN---TNNDILLYEGMSIFLRVLNPIAPHITHILWKELKY 808 (893)
Q Consensus 749 i~~l~~fvn~l~~~~k~~~~~---~-~~~---~~~~~~l~~~l~~ll~LL~P~~P~isEEIwq~L~~ 808 (893)
++.+++|++.++.|+.....| + .+. .++..+++++++.+++||+|||||+|||||+.|+.
T Consensus 402 ~~~l~~l~~~~n~y~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ll~P~~P~~aeei~~~L~~ 468 (497)
T 2csx_A 402 IEEILKFTSYLNKYVDEKQPWALNKERKKEELQKVLYALVDGLFVLTHLLYPITPNKMKEALQMLGE 468 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhcCchhhcccccHHHHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHcCC
Confidence 999999999888876443222 1 111 13456788899999999999999999999999986
No 15
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=4.3e-78 Score=714.79 Aligned_cols=465 Identities=18% Similarity=0.266 Sum_probs=384.4
Q ss_pred CCCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2890 34 PNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKK 113 (893)
Q Consensus 34 ~~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~ 113 (893)
++++|||++|||||||.|||||+|+++++|+++||+||+||+|++++|+|+||+||+.+|++.|+++.++++++.+.+++
T Consensus 16 ~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~ 95 (560)
T 3h99_A 16 VAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQT 95 (560)
T ss_dssp -CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCC----------
Q psy2890 114 QLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSD---------- 183 (893)
Q Consensus 114 ~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~---------- 183 (893)
+|++|||++| .+++|+++.|.+.++++|.+|+++|+||++.+.++||+.|+++|++.+| +|.||.||
T Consensus 96 ~~~~lgi~~d--~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v-~g~cp~c~~~~~~gd~ce 172 (560)
T 3h99_A 96 DFAGFNISYD--NYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFV-KGTCPKCKSPDQYGDNCE 172 (560)
T ss_dssp HHHHTTCCCS--EEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGE-EEECTTTCCSSEETTBCT
T ss_pred HHHHcCCCCC--CceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhc-CCCCCCCCCcccccchhh
Confidence 9999999887 7899999999999999999999999999999999999999999999665 46565554
Q ss_pred --------------------cccEEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHHHHhhcccccceeeeeccccC
Q psy2890 184 --------------------AIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIGKSKGIFLAFPHNIK 243 (893)
Q Consensus 184 --------------------~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~wi~~s~~~~i~f~~~~~ 243 (893)
.+++.+.++||||++++|++.|.+++ ++ ..||+.+++...+|+.
T Consensus 173 ~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~-~~-~~~~~~~~~~~~~~l~-------------- 236 (560)
T 3h99_A 173 VCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWT-RS-GALQEQVANKMQEWFE-------------- 236 (560)
T ss_dssp TTCCBCCGGGCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHH-HT-SCSCHHHHHHHHHHHH--------------
T ss_pred hccccCChhhhcCCccccCCCCceEEecceEEEEHHHHHHHHHHHH-Hh-CCCCHHHHHHHHHHHh--------------
Confidence 68899999999999999999999998 33 2366555554444431
Q ss_pred CCCCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhchHHHHHHHHHHhhcCccccccccccccccceEEEc
Q psy2890 244 DPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYKKNNNIESNNLLKKSILTQLKVLH 323 (893)
Q Consensus 244 ~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 323 (893)
T Consensus 237 -------------------------------------------------------------------------------- 236 (560)
T 3h99_A 237 -------------------------------------------------------------------------------- 236 (560)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCeeeEEEecccccCCCCCccccCCCCCHHHHHHHHHcCCceeeeecCCCCCccccccccccccCCccccccCCCCC
Q psy2890 324 PLTNQEIKVFVVNYVIEKSYGRAAIGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYN 403 (893)
Q Consensus 324 P~~~~~ipv~~~~~V~~~~~GTG~~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~~s~~~~ 403 (893)
T Consensus 237 -------------------------------------------------------------------------------- 236 (560)
T 3h99_A 237 -------------------------------------------------------------------------------- 236 (560)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCeeeEeeecceeecccc-ccCCccCeEEcCCCCeeecCCCCCCccCCCccCCCCccccc
Q psy2890 404 NMSHKEATNAISTDLIKLGLGNKKNIFRLRDWAISRQR-YWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKEN 482 (893)
Q Consensus 404 gl~~~~a~~~i~~~L~~~~~~~~~~~~~l~DW~ISRQr-~WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~g~~l~~~ 482 (893)
+ .++|||||||+ +||+|||. +
T Consensus 237 ----------------~----------~l~D~~IsR~~~~WG~~iP~----~---------------------------- 258 (560)
T 3h99_A 237 ----------------S----------GLQQWDISRDAPYFGFEIPN----A---------------------------- 258 (560)
T ss_dssp ----------------H----------CCCCEECEEESSCSSCBCTT----C----------------------------
T ss_pred ----------------c----------CCCCCCccccCCcCCeeCCC----C----------------------------
Confidence 1 27899999999 89999994 1
Q ss_pred ccccccccCCCCccceecCCcccccccccchh-hhh-cCCCccccCCChhhhhccCCce-----eeecchhhHHHHHHHH
Q psy2890 483 KKFLHVSCPKCNKLAFRETDTMDTFVDSSWYY-MRY-ISPKLENFMIDDNKINYWMPVD-----QYIGGIEHAILHLLYA 555 (893)
Q Consensus 483 ~~~~~~~c~~~g~~~~re~d~~D~WfdSsw~~-~~~-~~p~~~~~~~~~~~~~~~~PvD-----~~igG~D~~i~Hl~y~ 555 (893)
+..|+|||||+...| ... .++.... +...++.|+|.| +++.|+||+.+|.
T Consensus 259 -----------------~~~viyvW~da~~~y~s~~~~~~~~~~---~~~~~~~~wp~~~~~~~~~~~G~D~~~fh~--- 315 (560)
T 3h99_A 259 -----------------PGKYFYVWLDAPIGLMGSFKNLCDKRG---DSVSFDEYWKKDSTAELYHFIGKDIVYFLS--- 315 (560)
T ss_dssp -----------------TTEEECHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHBTTCCSEEEEEEEGGGHHHHH---
T ss_pred -----------------CCceEEeCcccchhHHHHHHHHhhccC---ChhhHHHhCcCCCCceeEEEeccccchhHH---
Confidence 124899999997433 322 1222110 124588899999 9999999998885
Q ss_pred HHHHHHHHHhcCccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccceeeecCCCcceeccccc
Q psy2890 556 RFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEK 635 (893)
Q Consensus 556 rf~~~~l~~~g~~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~~~~~~~g~~~~~~~~~K 635 (893)
.||+++|..+|+ ..| +++++||||+ .+| +|
T Consensus 316 ~~~~a~l~~~g~---~~p-~~v~~hg~v~---------~~G-------------------------------------~K 345 (560)
T 3h99_A 316 LFWPAMLEGSNF---RKP-SNLFVHGYVT---------VNG-------------------------------------AK 345 (560)
T ss_dssp THHHHHHHHTTB---CCC-SEEEEECCEE---------ETT-------------------------------------EE
T ss_pred HHHHHHHHhCCC---CCC-cEEEEEeEEE---------eCC-------------------------------------ee
Confidence 489899988886 455 9999999998 345 89
Q ss_pred cccCCCCccCccchhhhhCchhHHHHHHhcCCCC-CCcccChhhhhH--HHHHHHHHHHHHHhhhhccccccccccccCC
Q psy2890 636 MSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPE-KNLEWSDIGIEG--AYRFLNRVWNFSYILAPRIINIINLNIFHND 712 (893)
Q Consensus 636 MSKSkgN~i~p~~ii~~yGaD~lRl~ll~~~~~~-~d~~~~~~~i~~--~~~~l~rl~n~~~~~~~~~~~~~~~~~~~~~ 712 (893)
||||+||+|+|.++|++||+|++|||+++.++.+ +|++|+++.+.. ..++++++||++.++...... .+.
T Consensus 346 MSKS~GNvv~p~d~i~~~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~~l~n~~~R~~~~~~~--~~~----- 418 (560)
T 3h99_A 346 MSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINK--RFD----- 418 (560)
T ss_dssp CCTTTTCCCBHHHHHHHSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCCCTHHHHTTHHHHHH--HST-----
T ss_pred ccccCCCcCCHHHHHHHcCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcC-----
Confidence 9999999999999999999999999999988877 899999999875 456888899987665431110 110
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccccC---CC-CC----cccHHHHHHHH
Q psy2890 713 FSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIFNILERINSETKFD---NN-KN----TNNDILLYEGM 784 (893)
Q Consensus 713 ~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fvn~l~~~~k~~~~~---~~-~~----~~~~~~l~~~l 784 (893)
........|+|++++++.++++++++|++|+|+.|++.+++|++..+.|+.....| +. .. ..+..++++++
T Consensus 419 -~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~l~~~~n~Yi~~~kpw~l~k~~~~~~~~~~~~~~~~~~l 497 (560)
T 3h99_A 419 -GVLASELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLANRYVDEQAPWVVAKQEGRDADLQAICSMGINLF 497 (560)
T ss_dssp -TBCCSSCSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHCHHHHTTSTTCHHHHHHHHHHHHHHH
T ss_pred -CCCCCccccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCchhhcCCcCcHHHHHHHHHHHHHHH
Confidence 00112356899999999999999999999999999999999998888887543332 11 11 13356678999
Q ss_pred HHHHHHhcccccchHHHHHHHhhccCCCCCeeeccCCCCC
Q psy2890 785 SIFLRVLNPIAPHITHILWKELKYSIQQGDILNACWPKID 824 (893)
Q Consensus 785 ~~ll~LL~P~~P~isEEIwq~L~~~~~~~sI~~~~wP~~d 824 (893)
+.+++||+|||||+|||||++|+. + +.||.++
T Consensus 498 ~~~~~lL~P~~P~~aeei~~~L~~---~-----~~w~~~~ 529 (560)
T 3h99_A 498 RVLMTYLKPVLPKLTERAEAFLNT---E-----LTWDGIQ 529 (560)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTS---C-----CCTGGGG
T ss_pred HHHHHHHhccccHHHHHHHHHcCC---C-----CChhhhh
Confidence 999999999999999999999985 2 5788653
No 16
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=3.2e-44 Score=408.03 Aligned_cols=116 Identities=15% Similarity=0.146 Sum_probs=106.1
Q ss_pred CcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy2890 36 GKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQL 115 (893)
Q Consensus 36 ~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l 115 (893)
.++|++ .|+|+|.+||||+|+++++|+++||+|++||+|.+++|+|+||.+|+.+|.+.|.++.++++++++.|++++
T Consensus 40 v~~y~~--gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~ 117 (414)
T 3c8z_A 40 ATMYVC--GITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDM 117 (414)
T ss_dssp EEEEEC--CCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred ceEEeC--CCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 344444 677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCc-ccccCccccCChhhHHHHHHHHHHHHhcCcceeece
Q psy2890 116 SSLGLA-IDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTG 157 (893)
Q Consensus 116 ~~lgi~-~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~ 157 (893)
++|||+ +| .+.+|++ |...++++|.+|+++|+||++..
T Consensus 118 ~~Lgi~~~d--~~~r~t~--~~~~~~~~~~~L~~kG~~Y~~~~ 156 (414)
T 3c8z_A 118 AALRVLPPH--DYVAATD--AIAEVVEMVEKLLASGAAYIVED 156 (414)
T ss_dssp HHTTCCCCS--EEEEGGG--CHHHHHHHHHHHHHHTSEEECSC
T ss_pred HHcCCCCCc--ceecccc--hHHHHHHHHHHHHHCCCEEeccC
Confidence 999999 88 4556654 88999999999999999998763
No 17
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=1.4e-44 Score=409.78 Aligned_cols=127 Identities=20% Similarity=0.199 Sum_probs=116.9
Q ss_pred cEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy2890 37 KFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLS 116 (893)
Q Consensus 37 ~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~ 116 (893)
+.-++...|+|+|.+||||+|+++++|+++||+|++||+|.+++|+|+||.||+.+|.+.|.+|.++++++++.|+++++
T Consensus 25 ~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~ 104 (462)
T 3tqo_A 25 KVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEK 104 (462)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 34555567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceee-ceeeeecCCCC
Q psy2890 117 SLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKK-TGIVNWDPIEK 166 (893)
Q Consensus 117 ~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~-~~~v~~~~~~~ 166 (893)
+|||++||... ...+|...++++|.+|+++|+||++ .+.|+||+.+.
T Consensus 105 ~LgI~~d~~~p---raTe~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~ 152 (462)
T 3tqo_A 105 ALRVLSPDQEP---RATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRF 152 (462)
T ss_dssp HHTCCCCSBCC---BGGGCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTC
T ss_pred HcCCCCCcccc---ChhhHHHHHHHHHHHHHHCCCEEEecCCcEEeccccc
Confidence 99999996543 3348999999999999999999999 78999999874
No 18
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=100.00 E-value=1.6e-44 Score=410.41 Aligned_cols=123 Identities=16% Similarity=0.128 Sum_probs=99.3
Q ss_pred EEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCcccccccc----------ccccHHHHHHHHHcCCCHHHHHHHHHH
Q psy2890 40 TCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGW----------DAFGMPAENAAILNNTSPAKWTYDNVS 109 (893)
Q Consensus 40 i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~----------D~~G~pie~~a~~~g~~~~~~~~~~~~ 109 (893)
++..+|+|+|.+||||+|+++++|+++||+|++||+|.|++|+ |+||+||+.+|.++|++|+++++++++
T Consensus 45 ~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~~~~~ 124 (501)
T 3sp1_A 45 VYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEFFTE 124 (501)
T ss_dssp EEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHHHHHHHHHH
T ss_pred EEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 3445677779999999999999999999999999999999654 777999999999999999999999999
Q ss_pred HHHHHHHHcCCcccccCccccCChhhHHHHHHHHHHHHhcCcceeeceeeeecCCC
Q psy2890 110 YMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIE 165 (893)
Q Consensus 110 ~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~ 165 (893)
.|++++++|||++|| +.+.+++|...++++|.+|+++|+||++.+.||||+.+
T Consensus 125 ~f~~d~~~Lgi~~d~---~~~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~ 177 (501)
T 3sp1_A 125 AFFNDCRKLNIVYPD---KVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSC 177 (501)
T ss_dssp HHHHHHHHTTCCCCS---EEEEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGG
T ss_pred HHHHHHHHcCCCCCC---cccCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCc
Confidence 999999999999996 33568999999999999999999999999999999976
No 19
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=100.00 E-value=1.4e-41 Score=390.01 Aligned_cols=125 Identities=21% Similarity=0.213 Sum_probs=113.2
Q ss_pred CCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy2890 35 NGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQ 114 (893)
Q Consensus 35 ~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~ 114 (893)
+-++|++. |+|+|.+||||+|+++++|+++||+|++||+|.+++|+|++|.+|+.+|.++|.+++++++++++.++++
T Consensus 22 ~v~~yv~g--Pt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~ 99 (461)
T 1li5_A 22 EVGMYVCG--ITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKD 99 (461)
T ss_dssp EEEEEECC--CBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CeeEEEcC--CcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 44566664 5555999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcc-cccCccccCChhhHHHHHHHHHHHHhcCcceee-ceeeeecCCC
Q psy2890 115 LSSLGLAI-DWSREIITCSPKYYKWNQWIFLKMFKRGIIYKK-TGIVNWDPIE 165 (893)
Q Consensus 115 l~~lgi~~-Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~-~~~v~~~~~~ 165 (893)
+++|||++ | .+.+|+ +|...+++++.+|.++|++|++ ...|+||+.+
T Consensus 100 ~~~LgI~~~d--~~~r~t--~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~ 148 (461)
T 1li5_A 100 FDALNILRPD--MEPRAT--HHIAEIIELTEQLIAKGHAYVADNGDVMFDVPT 148 (461)
T ss_dssp HHHTTCCCCS--BCCBGG--GCHHHHHHHHHHHHHTTSEEECTTSCEEECGGG
T ss_pred HHHcCCCCCc--cccccc--chHHHHHHHHHHHHHCCCEEEecCCCEEEeccc
Confidence 99999998 6 344444 4899999999999999999999 8999999876
No 20
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A
Probab=100.00 E-value=5.2e-38 Score=323.05 Aligned_cols=198 Identities=32% Similarity=0.494 Sum_probs=156.8
Q ss_pred ccccceeeeeccccCCCC-------C--Cccc--cCCcEEEEEeccccccccccEEEECCCChHHHHHhhch--------
Q psy2890 229 GKSKGIFLAFPHNIKDPN-------K--NNKL--IQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNN-------- 289 (893)
Q Consensus 229 ~~s~~~~i~f~~~~~~~~-------~--~~~~--~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~-------- 289 (893)
|||+|+.|+|++.+.... + ...+ ....+++||||||||||||+||||||+|+|+..+...+
T Consensus 1 gkS~G~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vwTTtPwTL~gn~~iav~pe~~yv~~~~~~~~~~~~~~~ 80 (219)
T 3o0a_A 1 GRSEGALIRFYVEIEEPEKFLNCVPEELKETLLKEKRIYIDVFTTRPDTVFGATFVVLAPEHPLVPVLACIGERLGNACY 80 (219)
T ss_dssp ---CCEEEEEEEECSCGGGTGGGSCHHHHHHHHHHSEEEEEEEESCGGGGGGCCEEEECTTCTHHHHHHHHHHHTTCCCH
T ss_pred CceeEEEEEEEecCCccccccccccchhhhhcccCCCCEEEEEECCcchhhcccEEEECCCCcEEEEEecCCccccchhH
Confidence 689999999999743100 0 0000 01268999999999999999999999999999887544
Q ss_pred HHHHHHHHHHhhcCcccc-ccccccccccceEEEcCCCCCeeeEEEecccccCCCCCcc-ccCCCCCHHHHHHHHHcCCc
Q psy2890 290 LLLQKFILEYKKNNNIES-NNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAA-IGVPAHNKHDFYFAKKHSLL 367 (893)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~-~~~~~~g~~~g~~~~~P~~~~~ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~~~~~~~l~ 367 (893)
...++|++.+......+. ...++.|.|+|++|.||++++++||+.++||+ +++|||+ |+|||||++||+||++||||
T Consensus 81 ~~~~~~i~~~~~~~~~~~~~~~~~~G~l~G~~~~~Pl~~~~iPI~~adyV~-~~~GTGaV~~aPaHd~~D~~~~~k~~Lp 159 (219)
T 3o0a_A 81 SDVENFVEKMKKMSTRERTMEEDKEGVFLGVYATNPANGEKIPVWSANYVL-YEYGTGAIMCVPAHDQRDWEFAKKYDLP 159 (219)
T ss_dssp HHHHHHHHHHHTCCHHHHHSCSSCCEEEEEEEEECTTTCCEEEEEEETTSC-TTSTTSEEEECTTTCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhhccccceeEEEeeeEEcCCEEECCCCCCeeeEEEecccc-cCCCCCeEEECCCCCHHHHHHHHHcCCC
Confidence 445678877766544333 23568899999999999999999999999999 9999999 99999999999999999999
Q ss_pred eeeeecCCCCCccccccccccccCCccccccCCCCCCCCHHHHHHHHHHHHHHcCCCCeeeEeee
Q psy2890 368 IKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNKKNIFRL 432 (893)
Q Consensus 368 ~~~vi~~~~g~~~~~~~~~~~~~~g~~~~~~s~~~~gl~~~~a~~~i~~~L~~~~~~~~~~~~~l 432 (893)
++++|++ +++..+ ...+|+++|+ |+|+++|+||++.+|+++|++.|++.|++.++++|||
T Consensus 160 i~~vi~~-~~~~~~--~~g~ft~~g~--~~~~~~~~Gl~~~eA~~~Ii~~L~~~g~l~~~~~yrL 219 (219)
T 3o0a_A 160 IKVVVKP-EGAWDF--EKGAYEGKGT--LVNSDGFDGLDSETAKRKITEWLQDRGLGEKKVSYRL 219 (219)
T ss_dssp CCCCEEC-SSCCCT--TTCCCCSCCE--ECSCGGGTTCBHHHHHHHHHHHHHHTTSEEEC-----
T ss_pred ceeeeCC-cccccc--ccccccccce--EecCCCCCCCCHHHHHHHHHHHHHHCCCeeeeeeecC
Confidence 9999986 332100 1468999999 8999999999999999999999999999999999986
No 21
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A
Probab=100.00 E-value=9.9e-36 Score=302.62 Aligned_cols=183 Identities=36% Similarity=0.539 Sum_probs=155.6
Q ss_pred cceeeeeccccCCCCCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhchHHHHHHHHHHhhcCcccc--cc
Q psy2890 232 KGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYKKNNNIES--NN 309 (893)
Q Consensus 232 ~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 309 (893)
+|++|+|++.+. +.+|+||||||||||||+||||||+|+|+......+..+.+|+++++.....+. ..
T Consensus 11 ~g~~v~F~~~~~----------~~~l~i~TTrP~TL~g~~avav~P~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (196)
T 2ajg_A 11 EGVEITFNVNDY----------DNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMAT 80 (196)
T ss_dssp CEEEEEEEBTTC----------SSEEEEEESCGGGGGGCCEEEECTTSHHHHHHHTTCHHHHHHHHHHHHCCCCGGGGGG
T ss_pred ceEEEEEEeCCC----------CcEEEEEECChhhhcCccEEEECCCCcEEEEEcCCHHHHHHHHHHhhcccccceEEEe
Confidence 689999999732 578999999999999999999999999998876556677888887766543333 22
Q ss_pred ccccccccceEEEcCCCCCeeeEEEecccccCCCCCcc-ccCCCCCHHHHHHHHHcCCceeeeecCCCCCcccccccccc
Q psy2890 310 LLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAA-IGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWY 388 (893)
Q Consensus 310 ~~~~g~~~g~~~~~P~~~~~ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~ 388 (893)
..+.|.|.|+++.||++++++||+.++||+ +++|||+ |+|||||++||+||++||||++++|++.+|...+++ +++|
T Consensus 81 ~~k~g~l~G~~~~~P~~~~~ipV~~ad~V~-~~~GTG~V~~aPah~~~D~~~~~k~~L~i~~vI~~~~g~~~d~~-~g~y 158 (196)
T 2ajg_A 81 MEKKGVDTGFKAVHPLTGEEIPVWAANFVL-MEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLS-QQAL 158 (196)
T ss_dssp SCCCEEEEEEEEECTTTCCEEEEEEETTCC-SSSSCSEEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSSCCCCS-SSCC
T ss_pred eeeCCEEcCCEEECCCCCCeeEEEEeCCCc-cCCCCceEEECCCCCHHHHHHHHHcCCCceeEEeCCcCcccccc-cccc
Confidence 356778999999999999999999999999 9999999 999999999999999999999999974233211111 5689
Q ss_pred ccCCccccccCCCCCCCCHHHHHHHHHHHHHHcCCCCeee
Q psy2890 389 IDKENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNKKN 428 (893)
Q Consensus 389 ~~~g~~~~~~s~~~~gl~~~~a~~~i~~~L~~~~~~~~~~ 428 (893)
+++|. |+|+++|+||++.+|+++|++.|++.|++.+++
T Consensus 159 ~~~g~--~~ns~~~~Gl~v~eA~~~Ii~~L~~~g~~~~~~ 196 (196)
T 2ajg_A 159 TEKGV--LFNSGEFNGLDHEAAFNAIADKLTAMGVGERKV 196 (196)
T ss_dssp CSCCC--BCSSGGGTTCCHHHHHHHHHHHHHHTTSEEEEC
T ss_pred cCCce--EecCcccCCeEHHHHHHHHHHHHHHCCCceeeC
Confidence 99998 899999999999999999999999999987653
No 22
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Probab=99.97 E-value=5.1e-32 Score=261.79 Aligned_cols=138 Identities=22% Similarity=0.219 Sum_probs=124.7
Q ss_pred ccceeeeeccccCCCCCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhchHHHHHHHHHHhhcCccccccc
Q psy2890 231 SKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYKKNNNIESNNL 310 (893)
Q Consensus 231 s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (893)
+.+++|+|++ ++ +.+++|||||||||+||+||||||+|+++.
T Consensus 4 ~~~~~v~F~~-~~----------~~~l~i~TTrP~Tl~g~~aiav~P~~~~~~--------------------------- 45 (147)
T 1wka_A 4 GKLYTLRYEV-EG----------GGFIEIATVRPETVFADQAIAVHPEDERYR--------------------------- 45 (147)
T ss_dssp CEEEEEEEEB-TT----------SCEEEEEESCGGGGGGCCEEEECTTCTTTG---------------------------
T ss_pred ceEEEEEEEC-CC----------CcEEEEEECCceecccceEEEECCCCchHH---------------------------
Confidence 5678999999 32 468999999999999999999999997542
Q ss_pred cccccccceEEEcCCCCCeeeEEEecccccCCCCCcc-ccCCCCCHHHHHHHHHcCCceeeeecCCCCCccccccccccc
Q psy2890 311 LKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAA-IGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYI 389 (893)
Q Consensus 311 ~~~g~~~g~~~~~P~~~~~ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~~~~~~~~ 389 (893)
.|.|+++.||++++++||+.++||+ +++|||+ |+|||||++||++|++||||++++|++ +|
T Consensus 46 ----~l~g~~~~~P~~~~~ipI~~~~~V~-~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~id~-~G------------ 107 (147)
T 1wka_A 46 ----HLLGKRARIPLTEVWIPILADPAVE-KDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINL-EG------------ 107 (147)
T ss_dssp ----GGTTCEEECTTSSCEEEEEECTTCC-TTSTTSEEEECTTTCHHHHHHHHHHTCCCCCSBCT-TS------------
T ss_pred ----HhcCCEEECCCCCCeeEEEEeCccc-cCCCCCcEEEccCCCHHHHHHHHHcCCCcceEECC-CC------------
Confidence 2589999999999999999999999 9999999 999999999999999999999999986 44
Q ss_pred cCCccccccCCC----CCCCCHHHHHHHHHHHHHHcCCCCeeeEe
Q psy2890 390 DKENCYCINSCK----YNNMSHKEATNAISTDLIKLGLGNKKNIF 430 (893)
Q Consensus 390 ~~g~~~~~~s~~----~~gl~~~~a~~~i~~~L~~~~~~~~~~~~ 430 (893)
. + ++++ |+||++.+|+++|++.|++.|.+.++.+|
T Consensus 108 ---~--~-~~~~~~~~~~Gl~~~~A~~~Ii~~L~~~g~l~~~~~~ 146 (147)
T 1wka_A 108 ---R--M-EGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDY 146 (147)
T ss_dssp ---B--B-CSTTSCGGGTTSBHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred ---E--E-cCCCcccccCCcCHHHHHHHHHHHHHHCCCeeeeeEc
Confidence 4 6 7777 99999999999999999999998877765
No 23
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A
Probab=99.97 E-value=7e-33 Score=279.28 Aligned_cols=175 Identities=19% Similarity=0.224 Sum_probs=139.3
Q ss_pred cccceeeeeccccCCCCCCccccCCcEEEEEeccccccccccEEEECCCChHHHHHhhch--HHHHHHHHHHhhcCcccc
Q psy2890 230 KSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNN--LLLQKFILEYKKNNNIES 307 (893)
Q Consensus 230 ~s~~~~i~f~~~~~~~~~~~~~~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 307 (893)
+|+|++|+|++.+... ....+.+++||||||||||||+||||||+|+|+..++... ...+++++++... ..+
T Consensus 2 ~S~~i~V~F~~~~~~~----~~~~~~~l~i~TTrP~Tl~g~~aiav~p~~~y~~~~~~~~~~i~a~~~~~~~~~~-~~~- 75 (186)
T 1wny_A 2 QDPSVYVRFPLKEPKK----LGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGE-GTP- 75 (186)
T ss_dssp -CCEEEEEEEBSCGGG----GTCSSEEEEEEESCGGGGGGCCEEEECTTSEEEEEEETTEEEEEEHHHHHHHHCT-TSC-
T ss_pred ccceEEEEEEeCCCcc----ccCCCcEEEEEECCcchhhcceEEEECCCCcEEEEEeCCcchHHHHHHHHHHhhc-CcE-
Confidence 5899999999974210 0011468999999999999999999999999987654211 1123455554433 111
Q ss_pred cccccccc-ccceEEEcCCC---CCeeeEEEecccccCCCCCcc-ccCCCCCHHHHHHHHHcCCceeeeecCCCCCcccc
Q psy2890 308 NNLLKKSI-LTQLKVLHPLT---NQEIKVFVVNYVIEKSYGRAA-IGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDK 382 (893)
Q Consensus 308 ~~~~~~g~-~~g~~~~~P~~---~~~ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~~~~~~~l~~~~vi~~~~g~~~~~ 382 (893)
...+++|. |.|+++.||++ ++++||+.++||+ +++|||+ |+|||||++||++|++||||++++|++ +|
T Consensus 76 ~~~~~~G~~l~g~~~~~P~~~~~~~~ipi~~~~~V~-~~~GTG~V~~aPahg~~D~~~~~~~~L~i~~~id~-~G----- 148 (186)
T 1wny_A 76 VLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVS-QEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDE-EG----- 148 (186)
T ss_dssp EEEEEEHHHHTTCBBCCSSCCCCSSCCBEEECTTCC-SSSSCSCEEECGGGCHHHHHHHHHHTCCCCCCBCT-TS-----
T ss_pred EEEEEEcccccCcEEECCccccCCCEEEEEEeCcCc-CCCCcccEEEcCCCCHHHHHHHHHcCCceEeeeCC-Cc-----
Confidence 34578887 89999999997 8999999999999 9999999 999999999999999999999999986 44
Q ss_pred ccccccccCCccccccCCCCCCCCHHHHHHHHHHHHHHcCCCCeeeEe
Q psy2890 383 IWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNKKNIF 430 (893)
Q Consensus 383 ~~~~~~~~~g~~~~~~s~~~~gl~~~~a~~~i~~~L~~~~~~~~~~~~ 430 (893)
. +.+++ |+||.+.+|+++|++.|++.|.+.++.+|
T Consensus 149 ----------~--~~~~~-~~Gl~v~~A~~~Ii~~L~~~g~l~~~~~~ 183 (186)
T 1wny_A 149 ----------K--LLVEP-FKGLYFREANRAILRDLRGRGLLFKEESY 183 (186)
T ss_dssp ----------B--BCSTT-CTTCBHHHHHHHHHHHHHHTTCEEEEEC-
T ss_pred ----------c--CccCC-CCCcCHHHHHHHHHHHHHHCCCeecceeE
Confidence 3 44457 99999999999999999999998776554
No 24
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Probab=99.95 E-value=4.9e-29 Score=262.62 Aligned_cols=186 Identities=18% Similarity=0.179 Sum_probs=133.0
Q ss_pred eeeeeccccCCCCCCccc-cCCcEEEEEeccccccccccEEEECCCChHHHHHhhch-------HHHHH--HHHHHhhcC
Q psy2890 234 IFLAFPHNIKDPNKNNKL-IQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNN-------LLLQK--FILEYKKNN 303 (893)
Q Consensus 234 ~~i~f~~~~~~~~~~~~~-~~~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~-------~~~~~--~~~~~~~~~ 303 (893)
..|+|++..........+ ..+.+|+||||||||||||+||||||+|+|+......+ ..... |.+.++..+
T Consensus 8 ~~ikf~v~~~~~~~~~~~~~~~~~l~v~TTrP~TL~g~talav~Pe~~yv~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~ 87 (252)
T 2wfd_A 8 TLLKLKVLEPYPSKLSGLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVNGDIFICTQKAARNMSYQGFTKDNG 87 (252)
T ss_dssp EEEEEEEESSCCGGGGGGTTSCEEEEEEESCGGGGGGCCEEEECSSSCCEEEECTTSCEEEECHHHHHHHHTTTSSSSTT
T ss_pred EEEEEEccCcchhhhhhccCCCCEEEEEECChHHHhhhheEEECCCCcEEEEEecCCcEEEEhhhhHHHHHHHHhhccCc
Confidence 568888653221111111 23578999999999999999999999999986432110 11111 111011111
Q ss_pred cccccccccccc-ccceEEEcCCCC-CeeeEEEecccccCCCCCcc-ccCCCCCHHHHH----------HHHHcCCc---
Q psy2890 304 NIESNNLLKKSI-LTQLKVLHPLTN-QEIKVFVVNYVIEKSYGRAA-IGVPAHNKHDFY----------FAKKHSLL--- 367 (893)
Q Consensus 304 ~~~~~~~~~~g~-~~g~~~~~P~~~-~~ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~----------~~~~~~l~--- 367 (893)
..+ ...+++|. |+|+++.||+++ +.+||++++||+ +++|||+ |+|||||++||+ ||++||||
T Consensus 88 ~~~-~~~~~~G~~l~G~~~~~Pl~~~~~ipV~~adyV~-~~~GTG~V~~vPaHd~~D~~~~~~l~~~~~fa~kygL~~~~ 165 (252)
T 2wfd_A 88 VVP-VVKELMGEEILGASLSAPLTSYKVIYVLPMLTIK-EDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAKYGIRDDM 165 (252)
T ss_dssp CCC-EEEECCHHHHTTCEEECSSCSSSCEEEEECSCCC-SSSSCSSEEECTTTCHHHHHHHHHHHHCSHHHHTTTCCGGG
T ss_pred ccE-EEEEEEcccccCCEEEcCCCCCceeEEEEeCccc-CCCCCCeEEEcCCCCHHHHHHHhhhccchhHHHHcCCCchh
Confidence 111 34578898 899999999999 589999999999 9999999 999999999999 68999998
Q ss_pred -----eeeeecCCCC--Ccc--------------c---cc--ccccccc---CCccccccCCCCCCCCHHHHHHHHHHHH
Q psy2890 368 -----IKQVINVKNK--SYS--------------D---KI--WKDWYID---KENCYCINSCKYNNMSHKEATNAISTDL 418 (893)
Q Consensus 368 -----~~~vi~~~~g--~~~--------------~---~~--~~~~~~~---~g~~~~~~s~~~~gl~~~~a~~~i~~~L 418 (893)
+++||+. +| ... + +. .+.+|+. +|+ |+ +|+|+||++.+|+++|++.|
T Consensus 166 ~~~~~~~~vI~~-~~~g~~~~~~~~~~~~i~~~~d~~~l~~~~~~~y~~~~~~G~--~~-~~~~~Gl~v~eA~~~Ii~~L 241 (252)
T 2wfd_A 166 VLPFEPVPVIEI-PGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYLKGFYEGI--ML-VDGFKGQKVQDVKKTIQKKM 241 (252)
T ss_dssp TTTCCCCCCEEB-TTTBSSHHHHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHHCE--EC-STTSTTCBHHHHHHHHHHHH
T ss_pred ccccCceeEEec-CcccccchhhhhhhccccCcchhhhhhhhhhhhccccccCce--Ee-eeccCCeEHHHHHHHHHHHH
Confidence 5778765 33 100 0 00 0234554 688 87 99999999999999999999
Q ss_pred HHcCCCC
Q psy2890 419 IKLGLGN 425 (893)
Q Consensus 419 ~~~~~~~ 425 (893)
++.|.+.
T Consensus 242 ~~~g~~~ 248 (252)
T 2wfd_A 242 IDAGDAL 248 (252)
T ss_dssp HHTTSEE
T ss_pred HHCCCCc
Confidence 9999864
No 25
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A*
Probab=99.95 E-value=9.7e-29 Score=261.11 Aligned_cols=172 Identities=20% Similarity=0.229 Sum_probs=127.3
Q ss_pred CcEEEEEeccccccccccEEEECCCChHHHHHhhc------hHHHHHHHHHHh---hcCcccccccccccc-ccceEEEc
Q psy2890 254 NGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARN------NLLLQKFILEYK---KNNNIESNNLLKKSI-LTQLKVLH 323 (893)
Q Consensus 254 ~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~------~~~~~~~~~~~~---~~~~~~~~~~~~~g~-~~g~~~~~ 323 (893)
+.+|+||||||||||||+||||||+++|+...... ......+.+.+. ..+.. ....++.|. |.|++|.|
T Consensus 32 ~~~l~v~TTrP~TL~g~talav~Pe~~yv~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~G~~L~G~~~~~ 110 (261)
T 2wfg_A 32 KVYLVAATLRPETMYGQTCCFVSPKIDYGVFDAGNGDYFITTERAFKNMSFQNLTPKRGYY-KPLFTINGKTLIGSRIDA 110 (261)
T ss_dssp EEEEEEEESCGGGGGGCCEEEECTTCEEEEEECSTTEEEEECHHHHHHHTTTTCSSSTTCC-CCSEEEEHHHHTTCEEEC
T ss_pred CCEEEEEECCchHHhhhheEEECCCCceEEEEecCceEEEhHHHHHHHHHHHhhhhccccc-EEEEEEecccccCCEEEC
Confidence 46899999999999999999999999997643321 112222222111 11111 134567887 89999999
Q ss_pred CCC-CCeeeEEEecccccCCCCCcc-ccCCCCCHHHHHHHHH-------cC-------CceeeeecCC-CCCccc-----
Q psy2890 324 PLT-NQEIKVFVVNYVIEKSYGRAA-IGVPAHNKHDFYFAKK-------HS-------LLIKQVINVK-NKSYSD----- 381 (893)
Q Consensus 324 P~~-~~~ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~~~~~-------~~-------l~~~~vi~~~-~g~~~~----- 381 (893)
|++ ++.+||++++||+ +++|||+ |+|||||++||++|++ || ||++++|+.. +|....
T Consensus 111 Pl~~~~~ipV~~adyV~-~~~GTG~V~~vPaHd~~Dy~~~~kl~~~~~~ygi~~~~~~L~i~~vId~~~~g~~~~~~~~~ 189 (261)
T 2wfg_A 111 PYAVNKNLRVLPMETVL-ATKGTGVVTCVPSDSPDDFVTTRDLANKPEYYGIEKDWVQTDIVPIVHTEKYGDKCAEFLVN 189 (261)
T ss_dssp TTCSSCSEEEEECTTCC-TTSTTSCEEECTTTCHHHHHHHHHHHHSTTTTTCCGGGCCCCCCCCEEBTTTBTCHHHHHHH
T ss_pred CCCCCceeEEEeecccc-CCCCCCeeEEcCCCCHHHHHHHHHhhcchhhcCCccccccCCceeEEcCcccCccchhhhhc
Confidence 998 5789999999999 9999999 9999999999999999 99 8999999851 221100
Q ss_pred ---cc-----------ccccccc---CCccccccCCCCCCCCHHHHHHHHHHHHHHcCCCCeeeEe
Q psy2890 382 ---KI-----------WKDWYID---KENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNKKNIF 430 (893)
Q Consensus 382 ---~~-----------~~~~~~~---~g~~~~~~s~~~~gl~~~~a~~~i~~~L~~~~~~~~~~~~ 430 (893)
++ .+.+|++ .|. |. +|+|+||++.+|+++|++.|++.|.+.+..++
T Consensus 190 ~~~i~s~~d~~~l~~a~~~~y~~G~~~g~--~~-~g~f~Gl~v~eA~~~Ii~~L~~~G~~~~~~~~ 252 (261)
T 2wfg_A 190 DLKIQSPKDSVQLANAKELAYKEGFYNGT--ML-IGKYKGDKVEDAKPKVKQDLIDEGLAFVYNEP 252 (261)
T ss_dssp HTTCCSTTCHHHHHHHHHHHHHHHHHHCE--EC-SSTTTTSBHHHHHHHHHHHHHHTTSEEEECC-
T ss_pred cccccccchhhhhhhhhhhhhhcccccce--Ee-ccccCCeEHHHHHHHHHHHHHHCCCeeeeeee
Confidence 00 0112322 244 43 88999999999999999999999998766544
No 26
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.94 E-value=2.5e-25 Score=253.71 Aligned_cols=198 Identities=14% Similarity=0.130 Sum_probs=132.5
Q ss_pred eeecchhhHHHHHHHHHHHHHHHHHhcCccCCCccc-eeeecceEeceeeeecccCCCCccccCCCcccccccCCCCccc
Q psy2890 540 QYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFI-RLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIH 618 (893)
Q Consensus 540 ~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pfk-~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~~~ 618 (893)
+|+.|.|| |..+.+.+ ..+..+|. .|.+ .++++|||.- + .+| ++
T Consensus 239 Iyv~G~dq---~~~f~~l~-~~l~~lG~----~~~~~~h~~~g~V~l------~-~dG----------------~~---- 283 (464)
T 3fnr_A 239 INIWGADH---HGYIPRMK-AAMEFLGF----DSNNLEIILAQMVSL------L-KDG----------------EP---- 283 (464)
T ss_dssp EEEEEGGG---GGGHHHHH-HHHHTTTC----CGGGEEEEEECCEEE------E-ETT----------------EE----
T ss_pred EEEecCcH---HHHHHHHH-HHHHHcCC----CccceEEEEeeeEEe------c-CCC----------------cc----
Confidence 78999999 44344433 34455554 3334 6788999931 2 344 11
Q ss_pred eeeecCCCcceeccccccccCCCCccCccchhhhhCchhHHHHHHhcCCCCCCcccChhhhhHHHH-----H----HHHH
Q psy2890 619 AILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYR-----F----LNRV 689 (893)
Q Consensus 619 ~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~~~-----~----l~rl 689 (893)
.|||||+||+|+|.+++++||+|++|||+++. .+.+|++|+.+.+....+ + ..|+
T Consensus 284 ---------------~KMSKr~Gn~v~l~dll~~~g~dalRy~~l~~-~~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi 347 (464)
T 3fnr_A 284 ---------------YKMSKRAGNFILMSDVVDEIGSDALRYIFLSK-KCDTHLEFDISDLQKEDSSNPVYYINYAHARI 347 (464)
T ss_dssp ---------------CCC---CCSSCBHHHHHHHHCHHHHHHHTTSS-CTTSCEEEEGGGGGCCSTTSHHHHHHHHHHHH
T ss_pred ---------------cCCcCcCCCCCCHHHHHhhccHHHHHHHHHhc-CCCCCCccCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 49999999999999999999999999999976 679999999998854221 2 3455
Q ss_pred HHHHHhhhhccccccccccccCCccccCCChhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhcccccC
Q psy2890 690 WNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIFNILERINSETKFD 769 (893)
Q Consensus 690 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~ai~~l~~fvn~l~~~~k~~~~~ 769 (893)
.++++.... .+ .... ..+...++..|++++.++.++.+.+.+++++++++.++..+++|+..+|+|+...+..
T Consensus 348 ~silrk~~~-~~--~~~~----~~~~~~L~~~e~~Ll~~L~~~~~~v~~a~~~~ep~~i~~yL~~La~~~n~fY~~~~vl 420 (464)
T 3fnr_A 348 HQVFAKAGK-KI--DDVM----KADLQSLNQDGVNLLFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFYNENKVV 420 (464)
T ss_dssp HHHHHHTTC-CT--TTST----TCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHCCCT
T ss_pred HHHHHHhhc-cC--CCcc----ccChhhCChHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCcCC
Confidence 555555321 00 0010 0022245556999999999999999999999999999999999999999998665443
Q ss_pred CCCCc--cc---HHHHHHHHHHHHHHhccccc
Q psy2890 770 NNKNT--NN---DILLYEGMSIFLRVLNPIAP 796 (893)
Q Consensus 770 ~~~~~--~~---~~~l~~~l~~ll~LL~P~~P 796 (893)
+++.+ .+ ..... +|+..+.||.-=+|
T Consensus 421 ~~~~~~~~aRL~L~~a~-vL~~gL~lLGi~ap 451 (464)
T 3fnr_A 421 GSANENDLLKLFSLVAL-SIKTAFSLMGIEAK 451 (464)
T ss_dssp TSTTHHHHHHHHHHHHH-HHHHHHHHTTCCCC
T ss_pred CCCHHHHHHHHHHHHHH-HHHHHHHhcCCCch
Confidence 33221 11 11112 66666677765555
No 27
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.94 E-value=1.2e-25 Score=266.73 Aligned_cols=117 Identities=24% Similarity=0.242 Sum_probs=98.8
Q ss_pred CCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHH-----------------------
Q psy2890 35 NGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAEN----------------------- 91 (893)
Q Consensus 35 ~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~----------------------- 91 (893)
.++..|--.-|||||++||||+|+.+++|+++|++++.||+|.+..+++++|.++..
T Consensus 118 ~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~~~~ 197 (629)
T 2zue_A 118 GKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRERG 197 (629)
T ss_dssp TCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhcccc
Confidence 456777788999999999999999999999999999999999999888888766332
Q ss_pred ----------------HHHHcCCCH--------------------HHHHHHHHHHHHHHHHHcCCcccccCccccCChhh
Q psy2890 92 ----------------AAILNNTSP--------------------AKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKY 135 (893)
Q Consensus 92 ----------------~a~~~g~~~--------------------~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~ 135 (893)
.+.+.+.+| +++++.+.+.+++++++|||++| .+..+++..+
T Consensus 198 ~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~~D--~~~~es~~~~ 275 (629)
T 2zue_A 198 LKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKYD--LLVWESDIVR 275 (629)
T ss_dssp SCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCCCS--EEEEHHHHHH
T ss_pred cccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCccc--cccCcCcccc
Confidence 222222223 77889999999999999999998 6777777666
Q ss_pred HHHHHHHHHHHHhcCcce
Q psy2890 136 YKWNQWIFLKMFKRGIIY 153 (893)
Q Consensus 136 ~~~v~~~f~~L~~~Gliy 153 (893)
...++.++.+|.++|++|
T Consensus 276 ~~~v~~vi~~L~~kG~~y 293 (629)
T 2zue_A 276 RKLFEIALELLSKNENFY 293 (629)
T ss_dssp TTHHHHHHHHHHTSTTEE
T ss_pred chhHHHHHHHHHHCCCcc
Confidence 889999999999999999
No 28
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.94 E-value=4.5e-26 Score=269.73 Aligned_cols=115 Identities=17% Similarity=0.135 Sum_probs=96.3
Q ss_pred cEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHH-------------------------
Q psy2890 37 KFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAEN------------------------- 91 (893)
Q Consensus 37 ~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~------------------------- 91 (893)
+..|...-|||||++||||+|+++++|+++|++|+.||+|.+...+++.|.++-.
T Consensus 104 ~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~~~g~~ 183 (592)
T 1iq0_A 104 VVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGRA 183 (592)
T ss_dssp EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHHH
T ss_pred eEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcchhHHHH
Confidence 5678888999999999999999999999999999999999997666665533211
Q ss_pred ---------------------HHHHcCCCHHHHHHHHHHHHHHHHHHcCCcccccCccccCChhhHHHHHHHHHHHHhcC
Q psy2890 92 ---------------------AAILNNTSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRG 150 (893)
Q Consensus 92 ---------------------~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G 150 (893)
.+.+.|. .+++++.+.+.+++++++|||++| .+.+|++..+...+++++.+|.++|
T Consensus 184 y~~~~~~~~~~~~~~~a~~~~~~~e~g~-~~~~~~~~~~~~~~~~~~LgI~~D--~~~~es~~~~~~~v~~~~~~L~~kG 260 (592)
T 1iq0_A 184 YVRLHQDPEYERLQPAIEEVLHALERGE-LREEVNRILLAQMATMHALNARYD--LLVWESDIVRAGLLQKALALLEQSP 260 (592)
T ss_dssp HHHHHHCTTTGGGHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHHHHTTCCCS--EEEEHHHHHHTTHHHHHHHHHTTST
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhCCchH-HHHHHHHHHHHHHHHHHHcCCEeE--EeccCCcccccchHHHHHHHHHHCC
Confidence 1134555 488999999999999999999998 6667776666889999999999999
Q ss_pred ccee
Q psy2890 151 IIYK 154 (893)
Q Consensus 151 liy~ 154 (893)
++|+
T Consensus 261 ~~y~ 264 (592)
T 1iq0_A 261 HVFR 264 (592)
T ss_dssp TEEC
T ss_pred Cccc
Confidence 9995
No 29
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis}
Probab=99.92 E-value=2.9e-26 Score=240.17 Aligned_cols=168 Identities=15% Similarity=0.115 Sum_probs=127.2
Q ss_pred CcEEEEEeccccccccccEEEECCCChHHHHHhhchHH---HHHHHHHHhhcCc-------ccccccccccc-ccceEEE
Q psy2890 254 NGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLL---LQKFILEYKKNNN-------IESNNLLKKSI-LTQLKVL 322 (893)
Q Consensus 254 ~~~l~v~Tt~p~tl~g~~~v~v~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~-------~~~~~~~~~g~-~~g~~~~ 322 (893)
+.+++||||||||||||+||||||+..|+......+.. ..+.++.+..++. ......+++|. |.|+++.
T Consensus 79 ~v~lvIWTTTPWTLPgNtAiaVnPd~~Yv~v~~~~ge~~IvAe~l~e~l~~q~~~~~~~~~~~~vl~~~kG~eL~G~~~~ 158 (311)
T 3pz6_A 79 KVYLLAATLRPETMVGQTNCWVLPTGRYGAYYINKDEVIIVSEHAAVNMAHQGLNNNKPFGELDFISEISGSDLLLATVR 158 (311)
T ss_dssp EEEEEEEESCGGGGGGCCEEEECTTCEEEEEEEETTEEEEEEHHHHHHHHTTTCSSSCCTTCCCEEEEEEHHHHTTCEEE
T ss_pred CEEEEEEECCchhhhhheEEEECCCCcEEEEEECCCCEEEEeHHHHHHHHHhcccccccCCCcEEEEEEEhHHhcCCEEE
Confidence 47899999999999999999999999998765421100 0122333332221 11134567887 8999999
Q ss_pred cCCCCC-eeeEEEecccccCCCCCcc-ccCCCCCHHHHH-----------HHHHcCC---------ceeeeecC-CCCCc
Q psy2890 323 HPLTNQ-EIKVFVVNYVIEKSYGRAA-IGVPAHNKHDFY-----------FAKKHSL---------LIKQVINV-KNKSY 379 (893)
Q Consensus 323 ~P~~~~-~ipv~~~~~V~~~~~GTG~-~~~Pah~~~D~~-----------~~~~~~l---------~~~~vi~~-~~g~~ 379 (893)
||++++ .+||++++||+ +++|||+ |+|||||++||. |++|||| ++++||+. ..|..
T Consensus 159 hPl~~~~~ipIl~ad~Vt-~d~GTGiVh~aPaHg~dDy~~~~d~Lk~k~~~~~Kygi~~e~v~~~~e~ipvI~~~g~G~~ 237 (311)
T 3pz6_A 159 APLSPYEQIFVLPLETIK-MDKGTGIVTSVPSDAPDDYACYKDILENRNGIAEKYGVDVGLMLEPYSPLPIIEIPDIGTL 237 (311)
T ss_dssp CTTCSSSCEEEEECTTCC-TTSTTSEEEECTTTCHHHHHHHHHHHTTGGGHHHHTTCCHHHHTTTSCCCCCEEBTTTBSS
T ss_pred CCCCCCCeeEEEecCcCc-cCCCcceEEeCCCCCHHHHHHHHHHhhccHHHHHHcCCchHHhccCCCeEEEEecCCCCCc
Confidence 999997 99999999999 9999999 999999999998 4555874 78888874 12432
Q ss_pred c--------------c---cc--ccccccc---CCccccccCCCCCCCCHHHHHHHHHHHHHHcCCCC
Q psy2890 380 S--------------D---KI--WKDWYID---KENCYCINSCKYNNMSHKEATNAISTDLIKLGLGN 425 (893)
Q Consensus 380 ~--------------~---~~--~~~~~~~---~g~~~~~~s~~~~gl~~~~a~~~i~~~L~~~~~~~ 425 (893)
. | |. .+.+|.+ +|+ |+ +|+|+|+.+.+||++|+++|.+.|.+.
T Consensus 238 ~A~~~ve~~~I~sq~D~~kLeeA~~~~Y~~ef~~Gv--m~-~g~~~G~~V~eAk~~i~~~L~~~g~a~ 302 (311)
T 3pz6_A 238 SAVRLCEESNVSSLHDRAKLTQIKEICYTKGFYTGI--MK-MGPFAGQSVKDCKQSCRDLLVQNNQCI 302 (311)
T ss_dssp HHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHCE--EC-SSTTTTSBHHHHHHHHHHHHHHTTCEE
T ss_pred cHHHHHHHhCCCCcchHHHHHHHHHHHHhccCCCCE--Ee-eeccCCeEHHHHHHHHHHHHHHCCCce
Confidence 1 1 00 1357873 698 88 899999999999999999999998764
No 30
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.92 E-value=2.9e-26 Score=268.21 Aligned_cols=114 Identities=17% Similarity=0.249 Sum_probs=97.6
Q ss_pred cEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCcccccccccccc--HHH---HHHHHHc--CCCH---------
Q psy2890 37 KFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFG--MPA---ENAAILN--NTSP--------- 100 (893)
Q Consensus 37 ~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G--~pi---e~~a~~~--g~~~--------- 100 (893)
+.|++.+.|+|||.+||||+|++++.|+++||++++|++|.++.++|++| .+| ...|.++ |.++
T Consensus 20 ~~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~ 99 (523)
T 1irx_A 20 EKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGC 99 (523)
T ss_dssp SEEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSS
T ss_pred CeEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhh
Confidence 35777778999999999999999999999999999999999999999999 555 4445555 7777
Q ss_pred -HHHHHHHHHHHHHHHHHcCCcccccCccccCChhhHH-HHHHHHHHHHhcC-ccee
Q psy2890 101 -AKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYK-WNQWIFLKMFKRG-IIYK 154 (893)
Q Consensus 101 -~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~~~-~v~~~f~~L~~~G-liy~ 154 (893)
+++++++.+.|+++|++|||.+| . +++++. |.. .+++++.+|.++| .||.
T Consensus 100 ~~~~~~~~~~~~~~~l~~Lgi~~D--~-~~~se~-~~~g~~~~~i~~L~~~G~~iy~ 152 (523)
T 1irx_A 100 HESYAEHFMRKFEEEVEKLGIEVD--L-LYASEL-YKRGEYSEEIRLAFEKRDKIME 152 (523)
T ss_dssp SSSHHHHHHHHHHHHHHTTTCCCE--E-EEHHHH-HHTTTTHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCce--E-Eechhh-ccchHHHHHHHHHHHchHHHHH
Confidence 88999999999999999999887 3 344432 777 8899999999999 7774
No 31
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.83 E-value=8.5e-19 Score=206.50 Aligned_cols=123 Identities=14% Similarity=0.070 Sum_probs=99.1
Q ss_pred CCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHH----------------------
Q psy2890 35 NGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENA---------------------- 92 (893)
Q Consensus 35 ~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~---------------------- 92 (893)
.++..|-..-|||+|++||||+|+.+++|+++|+++..||+|.+.....++|.++...
T Consensus 142 ~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~l~ 221 (607)
T 1f7u_A 142 NKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHLF 221 (607)
T ss_dssp CCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHHH
T ss_pred CCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHHHH
Confidence 4567888889999999999999999999999999999999999999999888765221
Q ss_pred --------------------------HHH------cCCC-----HHHHHHHHHHHHHHHHHHcCCcccccCccccCChhh
Q psy2890 93 --------------------------AIL------NNTS-----PAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKY 135 (893)
Q Consensus 93 --------------------------a~~------~g~~-----~~~~~~~~~~~~~~~l~~lgi~~Dw~~~~~T~~~~~ 135 (893)
|.+ .|.+ .+++++.+++.+++++++|||.+| .+..++ .|
T Consensus 222 ~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD--~~~~ES--~~ 297 (607)
T 1f7u_A 222 DVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYD--VYSGES--QV 297 (607)
T ss_dssp HHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCS--EEEEGG--GC
T ss_pred HHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcce--eecCcc--hh
Confidence 222 3443 356788899999999999999998 333333 34
Q ss_pred H-HHHHHHHHHHHhcCcceeeceeeee
Q psy2890 136 Y-KWNQWIFLKMFKRGIIYKKTGIVNW 161 (893)
Q Consensus 136 ~-~~v~~~f~~L~~~Gliy~~~~~v~~ 161 (893)
. ..+..++..|.++|++|+.+..+++
T Consensus 298 ~~~~~~~vi~~L~~kG~~ye~dGa~~~ 324 (607)
T 1f7u_A 298 SKESMLKAIDLFKEKGLTHEDKGAVLI 324 (607)
T ss_dssp CHHHHHHHHHHHHHTTCEEEETTEEEE
T ss_pred hhhHHHHHHHHHHhCCCEEEECCcEEE
Confidence 4 6889999999999999987665543
No 32
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.14 E-value=8.7e-11 Score=134.57 Aligned_cols=94 Identities=21% Similarity=0.267 Sum_probs=74.9
Q ss_pred EEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Q psy2890 39 YTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSL 118 (893)
Q Consensus 39 ~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~l 118 (893)
+++==+|.|||.|||||+++.++...++| +|.+.++.-+|+...+ .-..++.+.|.++|+.|
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~n~l~Ar-----~~~G~~iLRieDtD~~-------------R~~~e~~~~I~edL~wL 158 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAILNHEYAR-----KYDGRLILRIEDTDPR-------------RVDPEAYDMIPADLEWL 158 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG-------------GCCTTHHHHHHHHHHHH
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc-------------cccHHHHHHHHHHHHHc
Confidence 66777899999999999999988655555 5667777788877642 11446789999999999
Q ss_pred CCcccccCccccCChhhHHHHHHHHHHHHhcCccee
Q psy2890 119 GLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYK 154 (893)
Q Consensus 119 gi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~ 154 (893)
|+..| .. +..++|......+..+|.++|++|.
T Consensus 159 Gl~wd--~~--~~qSdr~~~y~~~~~~Li~~G~AY~ 190 (553)
T 3aii_A 159 GVEWD--ET--VIQSDRMETYYEYTEKLIERGGAYV 190 (553)
T ss_dssp TCCCS--EE--EEGGGGHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCC--CC--cccccCHHHHHHHHHHHHHcCCcee
Confidence 99665 43 4556788899999999999999995
No 33
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=98.29 E-value=4.4e-07 Score=97.51 Aligned_cols=95 Identities=18% Similarity=0.258 Sum_probs=70.2
Q ss_pred EEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Q psy2890 39 YTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSL 118 (893)
Q Consensus 39 ~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~l 118 (893)
+++==+|.|||.|||||+++.++. |+..+++.+.++.-+|+...+ .-..++.+.|.++|+.|
T Consensus 6 v~~RFAPsPtG~LHiG~~rtal~n-----~l~Ar~~~g~~ilRieDtD~~-------------R~~~~~~~~I~~dL~~L 67 (298)
T 1nzj_A 6 YIGRFAPSPSGELHFGSLIAALGS-----YLQARARQGRWLVRIEDIDPP-------------REVPGAAETILRQLEHY 67 (298)
T ss_dssp CEEEECCCTTSCCCHHHHHHHHHH-----HHHHHHTTCEEEEEECCSCGG-------------GSCTTHHHHHHHHHHHT
T ss_pred eEEEECcCCCCCccHHHHHHHHHH-----HHHHHhcCCeEEEEEecCCch-------------hhHHHHHHHHHHHHHHc
Confidence 445567999999999999998754 555555566777777765542 12256678999999999
Q ss_pred CCcccccCccccCChhhHHHHHHHHHHHHhcCccee
Q psy2890 119 GLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYK 154 (893)
Q Consensus 119 gi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~ 154 (893)
|+..| .. ....+++....+++..+|.++|++|.
T Consensus 68 Gl~~D--~~-~~~qSer~~~y~~~~~~L~~~G~aY~ 100 (298)
T 1nzj_A 68 GLHWD--GD-VLWQSQRHDAYREALAWLHEQGLSYY 100 (298)
T ss_dssp TCCCS--SC-CEEGGGCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCC--CC-CeeeeCCHHHHHHHHHHHHHcCCccc
Confidence 99776 41 22334567888999999999999994
No 34
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=98.15 E-value=2e-06 Score=98.68 Aligned_cols=95 Identities=20% Similarity=0.348 Sum_probs=71.7
Q ss_pred EEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Q psy2890 39 YTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSL 118 (893)
Q Consensus 39 ~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~l 118 (893)
+++==+|.|||.||||||++.++...+|| ++...++.-+|+... ...+.++.+.|.++|+.|
T Consensus 27 v~tRFaPSPtG~LHIGhaRtal~n~l~Ar-----~~gG~fiLRieDTD~-------------~R~~~e~~~~I~edL~wL 88 (553)
T 1qtq_A 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQ-----DYKGQCNLRFDDTNP-------------VKEDIEYVESIKNDVEWL 88 (553)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCG-------------GGCCHHHHHHHHHHHHHT
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECCCCc-------------hhcCHHHHHHHHHHHHHc
Confidence 56667899999999999999998877776 344556666666543 123557789999999999
Q ss_pred CCcccccCccccCChhhHHHHHHHHHHHHhcCccee
Q psy2890 119 GLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYK 154 (893)
Q Consensus 119 gi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~ 154 (893)
|+..| . ..+..++|.....+...+|+++|++|.
T Consensus 89 Gl~wd--e-~~~~qSer~~~~~~~a~~Li~~G~AY~ 121 (553)
T 1qtq_A 89 GFHWS--G-NVRYSSDYFDQLHAYAIELINKGLAYV 121 (553)
T ss_dssp TCCCS--S-SCEEGGGGHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCC--C-CCeehcccHHHHHHHHHHHHHCCCcee
Confidence 99765 2 234445667767777789999999995
No 35
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=98.07 E-value=3.9e-06 Score=96.09 Aligned_cols=97 Identities=21% Similarity=0.189 Sum_probs=73.2
Q ss_pred cEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy2890 37 KFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLS 116 (893)
Q Consensus 37 ~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~ 116 (893)
.++++--.|+|||.|||||+|+.++.|.+||. ..|.-++.+--+| +.....++.+.|.++|+
T Consensus 12 ~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G~~iLRieDtD----------------~~r~~~~~~~~I~~~l~ 73 (481)
T 2o5r_A 12 HMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKGKFILRIEDTD----------------LERSEREYEEKLMESLR 73 (481)
T ss_dssp -CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTCEEEECBCCSS----------------CCSGGGHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCCeEEEEEecCC----------------ccccHHHHHHHHHHHHH
Confidence 46677778999999999999999999999997 7888777755444 11223456677899999
Q ss_pred HcCCcccccCcc-------ccCChhhHHHHHHHHHHHHhcCcce
Q psy2890 117 SLGLAIDWSREI-------ITCSPKYYKWNQWIFLKMFKRGIIY 153 (893)
Q Consensus 117 ~lgi~~Dw~~~~-------~T~~~~~~~~v~~~f~~L~~~Gliy 153 (893)
.||+..| ..- ....+++....+++..+|.++|.+|
T Consensus 74 wlGl~~d--e~p~~gg~~g~y~QS~r~~~y~~~a~~L~~~G~aY 115 (481)
T 2o5r_A 74 WLGLLWD--EGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAY 115 (481)
T ss_dssp HHTCCCS--BBTTTBCTTCCCBGGGGHHHHHHHHHHHHHTTSEE
T ss_pred HcCCCCC--CCcccCCCCCceeeeccHHHHHHHHHHHHHCCCee
Confidence 9999655 421 1234566777888999999999987
No 36
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=98.00 E-value=5.4e-06 Score=94.31 Aligned_cols=94 Identities=21% Similarity=0.308 Sum_probs=71.1
Q ss_pred EEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Q psy2890 39 YTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSL 118 (893)
Q Consensus 39 ~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~l 118 (893)
+++==+|.|||.|||||+|+.+....++|. ..|.-++.+--+|. .....++.+.+.++|+.|
T Consensus 26 v~~RFAPSPTG~lHiG~~rtal~n~l~Ar~--~~G~filRieDtD~----------------~R~~~~~~~~i~~dl~wl 87 (490)
T 4g6z_A 26 VRTRFAPSPTGFIHLGNIRSALYPWAFARK--MKGTFVLRIEDTDV----------------ERSSQEAVDAILEGMAWL 87 (490)
T ss_dssp CEEEECCCCCSCCBHHHHHHHHHHHHHHHH--TTCEEEEEECCCCG----------------GGCCHHHHHHHHHHHHHT
T ss_pred ceEEeCCCCCCCccHHHHHHHHHHHHHHHh--cCCeEEEEeCCCCc----------------ccccHHHHHHHHHHHHHc
Confidence 455567999999999999999999888884 45655555544442 112356789999999999
Q ss_pred CCcccccCccccCChhhHHHHHHHHHHHHhcCcce
Q psy2890 119 GLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIY 153 (893)
Q Consensus 119 gi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy 153 (893)
|+..| .. .+..+++....++++.+|.++|++|
T Consensus 88 Gl~~d--~~-~~~qS~r~~~y~~~~~~Li~~G~aY 119 (490)
T 4g6z_A 88 GLDYD--EG-PYYQMQRMDRYREVLAQMQEKGLVY 119 (490)
T ss_dssp TCCCS--EE-EEEGGGCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCC--CC-CcccccCHHHHHHHHHHHHHCCCEE
Confidence 99665 42 2345567788899999999999998
No 37
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=97.98 E-value=5.4e-06 Score=99.28 Aligned_cols=95 Identities=20% Similarity=0.232 Sum_probs=74.5
Q ss_pred EEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Q psy2890 39 YTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSL 118 (893)
Q Consensus 39 ~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~l 118 (893)
+++==+|.|||.||||||++.++...++| +|.+.++.-+|+.... .-..++.+.|.++|+.|
T Consensus 67 v~tRFaPSPtG~LHIGhARtAL~n~l~Ar-----~~gG~fiLRIEDTD~~-------------R~~~e~~~~IledL~wL 128 (851)
T 2hz7_A 67 VVTRFPPDPSGYAHLGHVFASLLDFNTAR-----QYGGQFNLRMDDTNPE-------------LARQEYVDSIADDLKWL 128 (851)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCTT-------------TCCHHHHHHHHHHHHHH
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc-------------cccHHHHHHHHHHHHHc
Confidence 66666899999999999999988766666 4566677777766542 12557789999999999
Q ss_pred CCcccccCccccCChhhHHHHHHHHHHHHhcCccee
Q psy2890 119 GLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYK 154 (893)
Q Consensus 119 gi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~ 154 (893)
|+..| . ..+...+|......+..+|+++|++|.
T Consensus 129 Gl~wd--e-~~~~qSer~d~y~e~a~~LI~~G~AY~ 161 (851)
T 2hz7_A 129 GLDWG--E-HFYYASDYFDRYYAYAEQLIRQGDAYV 161 (851)
T ss_dssp TCCCT--T-CEEEGGGGHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCC--C-CcccHhhhHHHHHHHHHHHHHCCCcEe
Confidence 99665 2 234556788888999999999999995
No 38
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=97.91 E-value=6.7e-06 Score=94.25 Aligned_cols=93 Identities=17% Similarity=0.226 Sum_probs=67.5
Q ss_pred EecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC
Q psy2890 41 CSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGL 120 (893)
Q Consensus 41 ~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 120 (893)
+==+|.|||.|||||+|+.+....++| ++.+.++.-+|+... ..-..++.+.|.++|+.||+
T Consensus 4 ~RFAPSPtG~lHiG~artal~n~l~Ar-----~~~G~filRieDtD~-------------~R~~~~~~~~i~~dL~wLGl 65 (492)
T 2cfo_A 4 VRLAPSPTGNLHIGTARTAVFNWLYAR-----HRGGKFILRIEDTDR-------------ERSRPEYTENILEGLQWLGL 65 (492)
T ss_dssp EEECCCTTSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCSS-------------SSCCHHHHHHHHHHHHHTTC
T ss_pred EEeCCCCCCCccHHHHHHHHHHHHHHH-----hcCCeEEEEEeeCCc-------------cccchHHHHHHHHHHHHcCC
Confidence 334799999999999999988655555 344555555665542 11125677899999999999
Q ss_pred cccccCccccCChhhHHHHHHHHHHHHhcCccee
Q psy2890 121 AIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYK 154 (893)
Q Consensus 121 ~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~ 154 (893)
..| . ......++....+++..+|.++|++|.
T Consensus 66 ~wd--e-~~~~QS~r~~~y~~~~~~Li~~G~AY~ 96 (492)
T 2cfo_A 66 TWD--E-GPYFQSDRLDLYRQAIQTLLDKGLAYY 96 (492)
T ss_dssp CCS--E-EEEEGGGCHHHHHHHHHHHHHTTSEEE
T ss_pred CCC--C-CCccccCCHHHHHHHHHHHHHCCCceE
Confidence 655 4 223445667788889999999999995
No 39
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=97.89 E-value=1.1e-05 Score=94.30 Aligned_cols=96 Identities=19% Similarity=0.154 Sum_probs=70.8
Q ss_pred EEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Q psy2890 39 YTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSL 118 (893)
Q Consensus 39 ~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~l 118 (893)
+++-=+|.|||.|||||+|+.++.+.+||. ..|.-++.+=-+| +..-..++.+.|.++|+.|
T Consensus 130 v~~RFaPsPTG~LHiG~artAl~n~l~Ar~--~~G~~ilRieDtD----------------~~r~~~~~~~~I~~dL~wl 191 (592)
T 3al0_C 130 VRVRFAPSPTGHLHVGGARTALFNWMFARK--EGGKFILRIEDTD----------------TERSSREYEQQILESLRWC 191 (592)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHHH--HTCEEEECBCCCC----------------SSSCCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHHHHHh--cCCcEEEEecCcC----------------hhhccHHHHHHHHHHHHHc
Confidence 444445999999999999999999999985 5676666553333 2223446678899999999
Q ss_pred CCcccccCcc-------ccCChhhHHHHHHHHHHHHhcCccee
Q psy2890 119 GLAIDWSREI-------ITCSPKYYKWNQWIFLKMFKRGIIYK 154 (893)
Q Consensus 119 gi~~Dw~~~~-------~T~~~~~~~~v~~~f~~L~~~Gliy~ 154 (893)
|+.+| ... -...+++....+++..+|.++|++|.
T Consensus 192 Gl~~D--~~~~~gG~~gp~~qSer~~~y~~~~~~L~~~G~aY~ 232 (592)
T 3al0_C 192 GLDWD--EGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYY 232 (592)
T ss_dssp TCCCS--BBTTTBCTTCCCBSTTCHHHHHHHHHHHHHTTTEEE
T ss_pred CCCCC--CCCCcCCCCCCeeeeCCHHHHHHHHHHHHHcCCceE
Confidence 99665 521 12334556788899999999999993
No 40
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=97.71 E-value=5.2e-05 Score=86.73 Aligned_cols=95 Identities=19% Similarity=0.177 Sum_probs=69.6
Q ss_pred EEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Q psy2890 39 YTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSL 118 (893)
Q Consensus 39 ~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~l 118 (893)
+++-=+|.|||.|||||+++.+..-.+|| ...|.-++.+=-+| . ..-..++.+.|.++|+.|
T Consensus 26 v~~RFAPsPtG~LHiG~~rtal~n~l~Ar--~~~G~filRieDtD---~-------------~R~~~~~~~~I~~dL~wl 87 (488)
T 3afh_A 26 VRVRFAPSPTGHLHVGGARTALFNWMFAR--KEGGKFILRIEDTD---T-------------ERSSREYEQQILESLRWC 87 (488)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHH--HHTCEEEECBCCCC---T-------------TTCCHHHHHHHHHHHHHT
T ss_pred ceEEECCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEEeeCC---c-------------ccccHHHHHHHHHHHHHc
Confidence 45666799999999999999998888877 34565555444443 2 122445678899999999
Q ss_pred CCcccccCcc-------ccCChhhHHHHHHHHHHHHhcCcce
Q psy2890 119 GLAIDWSREI-------ITCSPKYYKWNQWIFLKMFKRGIIY 153 (893)
Q Consensus 119 gi~~Dw~~~~-------~T~~~~~~~~v~~~f~~L~~~Gliy 153 (893)
|+.+| ... ....+++....++...+|.++|++|
T Consensus 88 Gl~wD--e~~~~gG~~gp~~QSer~~~y~~~~~~L~~~G~aY 127 (488)
T 3afh_A 88 GLDWD--EGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAY 127 (488)
T ss_dssp TCCCS--BBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCC--cCCCCCCCCCCeeeeCCHHHHHHHHHHHHHcCCeE
Confidence 99655 531 1234466678889999999999999
No 41
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=97.65 E-value=4.3e-05 Score=88.40 Aligned_cols=94 Identities=17% Similarity=0.225 Sum_probs=67.1
Q ss_pred EEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Q psy2890 40 TCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLG 119 (893)
Q Consensus 40 i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 119 (893)
.+==+|.|||.|||||+++.++.-.+|| +..|.-++.+=-+| . ..-..++.+.|.++|+.||
T Consensus 26 rtRFAPsPtG~LHiG~artAl~n~~~Ar--~~~G~fiLRieDtD---~-------------~R~~~~~~~~I~~~L~wlG 87 (512)
T 4gri_A 26 RVRYAPSPTGLQHIGGIRTALFNYFFAK--SCGGKFLLRIEDTD---Q-------------SRYSPEAENDLYSSLKWLG 87 (512)
T ss_dssp EEEECCCSSSCCBHHHHHHHHHHHHHHH--HTTCEEEECBCCCC---T-------------TSCCHHHHHHHHHHHHHHT
T ss_pred eEEeCcCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEeCcCC---C-------------CcCCHHHHHHHHHHHHHcC
Confidence 3445799999999999999999999887 45675555443333 2 2223456788999999999
Q ss_pred CcccccCcc------c-cCChhhHHHHHHHHHHHHhcCcce
Q psy2890 120 LAIDWSREI------I-TCSPKYYKWNQWIFLKMFKRGIIY 153 (893)
Q Consensus 120 i~~Dw~~~~------~-T~~~~~~~~v~~~f~~L~~~Gliy 153 (893)
+..| ..- . ...+++...-++...+|.++|++|
T Consensus 88 l~wD--e~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY 126 (512)
T 4gri_A 88 ISFD--EGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAY 126 (512)
T ss_dssp CCCS--BBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEE
T ss_pred CCCC--cCCccCCCCCCccccchHHHHHHHHHHHHHcCCcc
Confidence 9766 311 1 123455566678889999999998
No 42
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=97.65 E-value=3.3e-05 Score=87.91 Aligned_cols=93 Identities=22% Similarity=0.230 Sum_probs=67.7
Q ss_pred EecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC
Q psy2890 41 CSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGL 120 (893)
Q Consensus 41 ~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 120 (893)
+==+|.|||.|||||+++.++.-.+|| ...|.-++. +|+... ..-..++.+.|.++|+.||+
T Consensus 4 ~RFaPsPtG~LHiG~~rtal~n~l~Ar--~~~G~filR---ieDtD~-------------~R~~~~~~~~I~~dl~wlGl 65 (468)
T 1j09_A 4 TRIAPSPTGDPHVGTAYIALFNYAWAR--RNGGRFIVR---IEDTDR-------------ARYVPGAEERILAALKWLGL 65 (468)
T ss_dssp EEECCCCSSSCBHHHHHHHHHHHHHHH--HTTCEEEEC---BCCCCT-------------TSCCTTHHHHHHHHHHHTTC
T ss_pred EEeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEE---eCcCCC-------------cccChHHHHHHHHHHHHcCC
Confidence 334799999999999999999888887 445654444 444432 11233566889999999999
Q ss_pred cccccCcc-------ccCChhhHHHHHHHHHHHHhcCcce
Q psy2890 121 AIDWSREI-------ITCSPKYYKWNQWIFLKMFKRGIIY 153 (893)
Q Consensus 121 ~~Dw~~~~-------~T~~~~~~~~v~~~f~~L~~~Gliy 153 (893)
..| ... -...+++...-++...+|.++|++|
T Consensus 66 ~wd--~~~~~gG~~gp~~QS~r~~~y~~~~~~L~~~G~aY 103 (468)
T 1j09_A 66 SYD--EGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAY 103 (468)
T ss_dssp CCS--BBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEE
T ss_pred CCC--CCCCCCCCCCCeeccCCHHHHHHHHHHHHHcCCeE
Confidence 655 532 1345567778888999999999998
No 43
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=97.51 E-value=0.00011 Score=84.17 Aligned_cols=95 Identities=20% Similarity=0.195 Sum_probs=70.6
Q ss_pred EEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Q psy2890 39 YTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSL 118 (893)
Q Consensus 39 ~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~l 118 (893)
+++==+|.|||.|||||+++.++.-.+|| ...|.-++.+=-+| +.....++.+.|.++|+.|
T Consensus 7 vr~RFAPsPTG~LHiG~~rtAL~n~l~Ar--~~gG~fiLRieDtD----------------~~R~~~~~~~~I~~~L~wl 68 (498)
T 2ja2_A 7 VRVRFCPSPTGTPHVGLVRTALFNWAYAR--HTGGTFVFRIEDTD----------------AQRDSEESYLALLDALRWL 68 (498)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHH--HHTCEEEECBCCCC----------------TTTCCHHHHHHHHHHHHHH
T ss_pred eeEEECcCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECcCC----------------CcccChHHHHHHHHHHHHc
Confidence 44555799999999999999999999988 55776555554443 2233445678899999999
Q ss_pred CCcccccCc-------cccCChhhHHHHHHHHHHHHhcCcce
Q psy2890 119 GLAIDWSRE-------IITCSPKYYKWNQWIFLKMFKRGIIY 153 (893)
Q Consensus 119 gi~~Dw~~~-------~~T~~~~~~~~v~~~f~~L~~~Gliy 153 (893)
|+..| .. -....+++...-++...+|.++|++|
T Consensus 69 Gl~wD--egp~~gG~~~~~~QS~r~~~y~~~~~~L~~~g~aY 108 (498)
T 2ja2_A 69 GLDWD--EGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAY 108 (498)
T ss_dssp TCCCS--BBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEE
T ss_pred CCCcC--CCcCcCCCCCCeeeecCHHHHHHHHHHHHHcCCeE
Confidence 99665 51 12334566777888999999999998
No 44
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=96.86 E-value=0.004 Score=67.73 Aligned_cols=74 Identities=20% Similarity=0.325 Sum_probs=44.5
Q ss_pred CcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy2890 36 GKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQL 115 (893)
Q Consensus 36 ~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l 115 (893)
+++.++++. -|||.||+||+.. +. .+.+++. .|+++++..| |.|++ + -...++.+ ..++...+.+++
T Consensus 31 ~~~~vy~G~-~PTg~lHlG~l~~-l~--~~~~lq~-~g~~~~~~i~-D~~a~-~-----~d~~~~~~-i~~~~~~~~~~~ 97 (323)
T 2cyb_A 31 EKPRAYVGY-EPSGEIHLGHMMT-VQ--KLMDLQE-AGFEIIVLLA-DIHAY-L-----NEKGTFEE-IAEVADYNKKVF 97 (323)
T ss_dssp SCCEEEEEE-CCCSCCBHHHHHH-HH--HHHHHHH-TTCEEEEEEC-HHHHH-H-----TTCCCHHH-HHHHHHHHHHHH
T ss_pred CCCEEEECc-CCCCcchHHHHHH-HH--HHHHHHH-CCCcEEEEEC-CceeE-c-----CCCCCHHH-HHHHHHHHHHHH
Confidence 345667776 4789999999633 22 3444443 4888776665 22332 0 01124544 456677888899
Q ss_pred HHcCCcc
Q psy2890 116 SSLGLAI 122 (893)
Q Consensus 116 ~~lgi~~ 122 (893)
.++|+..
T Consensus 98 ~a~Gldp 104 (323)
T 2cyb_A 98 IALGLDE 104 (323)
T ss_dssp HHTTCCT
T ss_pred HHhCCCc
Confidence 9998743
No 45
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=95.51 E-value=0.0074 Score=69.33 Aligned_cols=52 Identities=23% Similarity=0.081 Sum_probs=39.5
Q ss_pred cccccCCCC---------------ccCccchhhh-hCchhHHHHHHhcCCCCCCcccChhhhhHHHHH
Q psy2890 634 EKMSKSKNN---------------GIDPQTQINT-YGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRF 685 (893)
Q Consensus 634 ~KMSKSkgN---------------~i~p~~ii~~-yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~~~~ 685 (893)
+|||||+|| .++..++.++ |.++++|.|++..+--..+...+...++.+.+|
T Consensus 266 ~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnfl~~lG~s~~~~~~e~~~le~~~~~ 333 (553)
T 1qtq_A 266 TVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIRE 333 (553)
T ss_dssp SCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHHHHHHCCCSSCCCBCHHHHHHHHHH
T ss_pred ccccccccccccccCcccCCCCcchhhHHHHHHCCCCHHHHHHHHHHcCCCCCccccchhhHHHHHHh
Confidence 799999997 6677788876 999999999998875444444566666665443
No 46
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=95.17 E-value=0.019 Score=70.38 Aligned_cols=79 Identities=15% Similarity=0.321 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHh-hCCC
Q psy2890 137 KWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKK-KLPY 215 (893)
Q Consensus 137 ~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~-~~~~ 215 (893)
++-..+...|.++|++....... -..|.|+|||.+++++..+|||++++++++.+++.+++ ...-
T Consensus 316 ~a~~~iv~~L~~~g~l~~~~~~~--------------h~~p~c~R~~~~i~~~~~~qWFv~~~~~~~~~l~~v~~~~~~~ 381 (862)
T 1gax_A 316 EARRKAVELFREAGHLVKEEDYT--------------IALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAF 381 (862)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEEE--------------ECCEEETTTCSBCCEEECCEEEECHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHhCCCeeeecccc--------------ccCCeecCCCCeEEEEecceEEEEhHHHHHHHHHHHHcCCceE
Confidence 45567888899999876443321 12478999999999999999999999999999999832 2333
Q ss_pred ChHHHHHHHHhhcc
Q psy2890 216 WPKKVRLMQVNWIG 229 (893)
Q Consensus 216 ~p~~~~~~~~~wi~ 229 (893)
+|++.++...+||.
T Consensus 382 ~P~~~~~~~~~wl~ 395 (862)
T 1gax_A 382 VPERWKKVNMDWLE 395 (862)
T ss_dssp SSSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHh
Confidence 79999999999995
No 47
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=94.78 E-value=0.023 Score=61.60 Aligned_cols=72 Identities=19% Similarity=0.140 Sum_probs=49.7
Q ss_pred CceeeecchhhHHHHHHHHHHHHHHHHHhcCccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCc
Q psy2890 537 PVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKP 616 (893)
Q Consensus 537 PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~ 616 (893)
++|+-+||.|| ..|+..+|=+..-+ + ..+|| .+++.++.+ .+|
T Consensus 191 ~~~v~~gG~DQ-~~~i~l~rdla~r~---n---~~~~~--~l~~pll~g--------ldG-------------------- 233 (322)
T 2yxn_A 191 GVVLCIGGSDQ-WGNITSGIDLTRRL---H---QNQVF--GLTVPLITK--------ADG-------------------- 233 (322)
T ss_dssp CEEEEEECTTC-HHHHHHHHHHHHHH---H---CCCCE--EEECCCCBC--------TTS--------------------
T ss_pred CceEEecCchh-HHHHHHHHHHHHHh---C---CCCce--eeccCccCC--------CCc--------------------
Confidence 68999999999 55766666544322 1 13333 335556552 344
Q ss_pred cceeeecCCCcceeccccccccCCCCccCccchhhhhCchhHHHHHHh
Q psy2890 617 IHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIF 664 (893)
Q Consensus 617 ~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~ 664 (893)
+|||||.+|.|...+ ++..++.++=+++.
T Consensus 234 -----------------~KMSKS~~n~I~L~d--~~tsp~~~~~ki~~ 262 (322)
T 2yxn_A 234 -----------------TKFGKTEGGAVWLDP--KKTSPYKFYQFWIN 262 (322)
T ss_dssp -----------------CBTTEETTEECBSST--TTSCHHHHHHHHHT
T ss_pred -----------------ccccCCCCCeeeccC--CCCCHHHHHHHHhC
Confidence 799999999998888 67778888877774
No 48
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=94.71 E-value=0.02 Score=70.22 Aligned_cols=78 Identities=17% Similarity=0.351 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCC
Q psy2890 137 KWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYW 216 (893)
Q Consensus 137 ~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 216 (893)
++-..+...|.++|++........ ..+.|+|||.+++++.++||||+++++++.+++.+ ++..-.
T Consensus 361 ~a~~~i~~~L~~~g~~~~~~~~~h--------------~~p~c~r~~~~~~~~~~~qWF~~~~~~~~~~~~~~-~~~~~~ 425 (821)
T 1ile_A 361 EANRAILRDLRGRGLLFKEESYLH--------------SYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNN-QEIHWV 425 (821)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEE--------------EEEBCSSSCCBCEEEECCEEEECGGGGHHHHHHHH-HHSEES
T ss_pred HHHHHHHHHHHhCCCeeeeecccc--------------cCCEecCCCCEEEEEecchhhhchHHHHHHHHHHh-cCeEEE
Confidence 455677888999998776543321 23689999999999999999999999999999999 655423
Q ss_pred hHHH-HHHHHhhcc
Q psy2890 217 PKKV-RLMQVNWIG 229 (893)
Q Consensus 217 p~~~-~~~~~~wi~ 229 (893)
|+.. .+...+||.
T Consensus 426 P~~~~~~~~~~~l~ 439 (821)
T 1ile_A 426 PPHIKEGRYGEWLK 439 (821)
T ss_dssp SGGGTTTTTHHHHH
T ss_pred CchhhHhHHHHHHh
Confidence 7666 335667774
No 49
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=94.66 E-value=0.013 Score=72.02 Aligned_cols=52 Identities=13% Similarity=0.071 Sum_probs=44.8
Q ss_pred CcccCCCcccEEE-eeceeeEEecc--hHHHHHHHHHhhCCCChHHHHHHHHhhcc
Q psy2890 177 GRGWRSDAIIEKK-KIPMYYAKITN--YAEELLEYVKKKLPYWPKKVRLMQVNWIG 229 (893)
Q Consensus 177 g~c~~~~~~v~~~-~~~~~~~~l~~--~~~~l~~~~~~~~~~~p~~~~~~~~~wi~ 229 (893)
+.|++||.+++.+ .++||||++++ |++.+++.+ +...-+|+..++...+|+.
T Consensus 447 ~~~~r~g~~vi~~~~~~qwF~~~~~~~~~~~~l~~~-~~~~~~P~~~~~~~~~~l~ 501 (810)
T 1wkb_A 447 NVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKAL-ERMKILPETRRAQFEAIID 501 (810)
T ss_dssp CCBCTTSCBCEEEEEEEEEEECTTCHHHHHHHHHHH-HTSEEESGGGHHHHHHHHH
T ss_pred CcCCCCCCEEEEEecCCceeEecChHHHHHHHHhhh-cccEEECcchhchHHHHhh
Confidence 6788999999988 68999999996 999999999 6655468888888889985
No 50
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=94.34 E-value=0.24 Score=53.92 Aligned_cols=73 Identities=16% Similarity=0.236 Sum_probs=41.7
Q ss_pred EEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Q psy2890 39 YTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSL 118 (893)
Q Consensus 39 ~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~l 118 (893)
.+++++. |||.|||||..+.+. -+.+++ ..|++|.+..| |-|++-. ...+|.+ ..++...+..++.++
T Consensus 14 ~v~~G~~-PTG~lHLGn~~g~l~--~~~~lQ-~~G~~~~~~Ia-D~ha~t~------~~~dp~~-~~~~~~~~~~~~lA~ 81 (340)
T 2g36_A 14 RILSGMR-PTGKLHIGHLVGALE--NWVKLQ-EEGNECFYFVA-DWHALTT------HYDDVSK-LKEYTRDLVRGFLAC 81 (340)
T ss_dssp EEEEEEC-CCSSCBHHHHHTHHH--HHHHHH-HTTCEEEEEEC-HHHHHHH------HTTCCTT-HHHHHHHHHHHHHHT
T ss_pred eEEEeeC-CCCcccHHhHHHHHH--HHHHHH-HCCCCEEEEEe-cceeecC------CCCCHHH-HHHHHHHHHHHHHHh
Confidence 4455544 569999999987542 233333 46999887774 4455411 1234443 334444555667777
Q ss_pred CCccc
Q psy2890 119 GLAID 123 (893)
Q Consensus 119 gi~~D 123 (893)
|+..+
T Consensus 82 Gldp~ 86 (340)
T 2g36_A 82 GIDPE 86 (340)
T ss_dssp TCCTT
T ss_pred CCChh
Confidence 76433
No 51
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=94.22 E-value=0.04 Score=63.03 Aligned_cols=32 Identities=16% Similarity=0.116 Sum_probs=28.0
Q ss_pred cccccCCCCccCccchhh-hhCchhHHHHHHhcC
Q psy2890 634 EKMSKSKNNGIDPQTQIN-TYGADSTRLFIIFSA 666 (893)
Q Consensus 634 ~KMSKSkgN~i~p~~ii~-~yGaD~lRl~ll~~~ 666 (893)
+|||||+||+ ...++.+ .|-++++|.|++..+
T Consensus 246 ~KLSKr~g~~-~l~~~r~~G~~peal~~~l~~lG 278 (492)
T 2cfo_A 246 QKLSKRDGVT-SISDFRAMGYLAPALANYMTLLG 278 (492)
T ss_dssp SBCCTTSSCC-BHHHHHHTTCCHHHHHHHHHHTT
T ss_pred CEecccCCcc-cHHHHHHCCCCHHHHHHHHHHhC
Confidence 8999999997 6777776 499999999999865
No 52
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=94.17 E-value=0.063 Score=59.55 Aligned_cols=29 Identities=17% Similarity=0.036 Sum_probs=21.5
Q ss_pred cccccCCCCccCccchhhhhCchhHHHHHHh
Q psy2890 634 EKMSKSKNNGIDPQTQINTYGADSTRLFIIF 664 (893)
Q Consensus 634 ~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~ 664 (893)
+|||||.||.|..++- .-.++.++=+++.
T Consensus 292 ~KMSKS~~naI~L~d~--~tsp~~i~qki~~ 320 (392)
T 1y42_X 292 AKFGKSAGNAIWLDPY--QTSVFDFYGYFVR 320 (392)
T ss_dssp CBTTBCSSSBCBSSTT--TSCHHHHHHHHHT
T ss_pred hhccCCCCCeeeccCC--CCCHHHHHHHHHc
Confidence 7999999999988762 2456666666664
No 53
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=94.17 E-value=0.022 Score=70.42 Aligned_cols=53 Identities=13% Similarity=0.299 Sum_probs=47.5
Q ss_pred cCcccCCCcccEEEeeceeeEEecchHHHHHHHHHhhCCCChHHHHHHHHhhcc
Q psy2890 176 NGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIG 229 (893)
Q Consensus 176 ~g~c~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~wi~ 229 (893)
.+.||||+.+++++..+|||++++++++.+++.+ +...-.|+..++...+||.
T Consensus 394 ~p~c~R~~~pv~~r~t~QWFi~~~~lr~~~l~~i-~~~~~~P~~~~~r~~~~l~ 446 (917)
T 1ffy_A 394 YPHDWRTKKPVIFRATPQWFASISKVRQDILDAI-ENTNFKVNWGKTRIYNMVR 446 (917)
T ss_dssp EEEETTTCCBCEEEEEEEEEECHHHHHHHHHHHH-HTSEESSHHHHHHHHHHHH
T ss_pred CCEecCCCCEEEEEeccceEeeHHHHHHHHHHHH-hcCcccCHHHHHHHHHHHh
Confidence 3789999999999999999999999999999999 5554359999999999986
No 54
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=94.09 E-value=0.027 Score=62.95 Aligned_cols=75 Identities=20% Similarity=0.316 Sum_probs=39.0
Q ss_pred cEEEEecCCCCCCc-CcchHHHhHHHHHHHHHHHHHcCCccccccccccccH---HHHHHHHHcCCCHHHHHHHHHHHHH
Q psy2890 37 KFYTCSMLPYPSGK-LHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGM---PAENAAILNNTSPAKWTYDNVSYMK 112 (893)
Q Consensus 37 ~~~i~~~~P~~nG~-lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~---pie~~a~~~g~~~~~~~~~~~~~~~ 112 (893)
+..+++++= |||. |||||... --.+.++++ .|+++++..| |-||+ |.-......-+++.+ ..++...++
T Consensus 30 ~~~iy~G~d-PTg~sLHlGh~v~---l~~l~~lQ~-~G~~~i~lIg-d~ta~igdpsgk~~~R~~l~~e~-i~~n~~~~~ 102 (419)
T 2ts1_A 30 RVTLYCGFD-PTADSLHIGHLAT---ILTMRRFQQ-AGHRPIALVG-GATGLIGDPSGKKSERTLNAKET-VEAWSARIK 102 (419)
T ss_dssp CCEEEEEEC-CSSSSCBGGGHHH---HHHHHHHHH-TTCEEEEEEC-TTGGGTCCCTTCSSCCCCCCHHH-HHHHHHHHH
T ss_pred CCEEEEeeC-CCCCCccHHHHHH---HHHHHHHHH-CCCcEEEEEc-CceeEecCCCCccccccCCCHHH-HHHHHHHHH
Confidence 345566653 5687 99999663 223455554 5999887776 33333 110000001123333 344556666
Q ss_pred HHHHHc
Q psy2890 113 KQLSSL 118 (893)
Q Consensus 113 ~~l~~l 118 (893)
+++.++
T Consensus 103 ~q~~~~ 108 (419)
T 2ts1_A 103 EQLGRF 108 (419)
T ss_dssp HHHTTS
T ss_pred HHHHHH
Confidence 666554
No 55
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=94.06 E-value=0.028 Score=63.02 Aligned_cols=75 Identities=19% Similarity=0.321 Sum_probs=40.9
Q ss_pred cEEEEecCCCCCCc-CcchHHHhHHHHHHHHHHHHHcCCccccccccccccH---HHHHHHHHcCCCHHHHHHHHHHHHH
Q psy2890 37 KFYTCSMLPYPSGK-LHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGM---PAENAAILNNTSPAKWTYDNVSYMK 112 (893)
Q Consensus 37 ~~~i~~~~P~~nG~-lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~---pie~~a~~~g~~~~~~~~~~~~~~~ 112 (893)
+..+++++= |||. |||||... --.+.++++ .|+++++..| |-||+ |.-......-+++.+ ..++...++
T Consensus 32 ~~~iy~G~d-PTg~sLHlGh~v~---l~~~~~lQ~-~G~~~~~lIg-d~ta~igdp~gk~~~R~~l~~e~-i~~n~~~~~ 104 (420)
T 1jil_A 32 QVTLYCGAD-PTADSLHIGHLLP---FLTLRRFQE-HGHRPIVLIG-GGTGMIGDPSGKSEERVLQTEEQ-VDKNIEGIS 104 (420)
T ss_dssp CCEEEEEEC-CSSSSCBHHHHHH---HHHHHHHHH-TTCEEEEEEC-TTGGGTCCCTTCSSCCCCCCHHH-HHHHHHHHH
T ss_pred CCEEEEeeC-CCCCCccHHHHHH---HHHHHHHHH-CCCcEEEEEc-CceeEecCCCccccccccCCHHH-HHHHHHHHH
Confidence 455666653 5687 99999663 223555554 5999887776 33433 110000001123443 345567777
Q ss_pred HHHHHc
Q psy2890 113 KQLSSL 118 (893)
Q Consensus 113 ~~l~~l 118 (893)
+++.++
T Consensus 105 ~~~~~~ 110 (420)
T 1jil_A 105 KQMHNI 110 (420)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777666
No 56
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=93.99 E-value=0.033 Score=62.47 Aligned_cols=40 Identities=23% Similarity=0.432 Sum_probs=25.8
Q ss_pred cEEEEecCCCCCCc-CcchHHHhHHHHHHHHHHHHHcCCccccccc
Q psy2890 37 KFYTCSMLPYPSGK-LHMGHVRNYTINDVMYRYMRMNGYNVLMPMG 81 (893)
Q Consensus 37 ~~~i~~~~P~~nG~-lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G 81 (893)
+..+++++= |||+ |||||.. -+. .+.++++ .|+++++..|
T Consensus 32 ~~~iy~G~d-PTg~sLHLGhlv-~l~--~l~~lQ~-~G~~~i~lIg 72 (432)
T 2jan_A 32 PMTVYAGFD-PTAPSLHAGHLV-PLL--TLRRFQR-AGHRPIVLAG 72 (432)
T ss_dssp CCEEEEEEC-CSSSSCBGGGHH-HHH--HHHHHHH-TTCEEEEEEC
T ss_pred CCEEEEeeC-CCCCCcCHHHHH-HHH--HHHHHHH-CCCcEEEEEc
Confidence 345566643 5684 9999943 222 3556654 5999888876
No 57
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=93.97 E-value=0.032 Score=61.20 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=38.7
Q ss_pred CceeeecchhhHHHHHHHHHHHHHHHHHhcCccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCc
Q psy2890 537 PVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKP 616 (893)
Q Consensus 537 PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~ 616 (893)
.+|+.++|.|| ..|+..+|=+..- . ...+|| .+++.++.+ .+|
T Consensus 210 ~~~i~p~G~DQ-~~~i~l~rdla~r---~---n~~~~~--~l~~pll~~--------ldG-------------------- 252 (356)
T 2pid_A 210 GCRVQLGGSDQ-LGNIMSGYEFINK---L---TGEDVF--GITVPLITS--------TTG-------------------- 252 (356)
T ss_dssp CCCEEEEEGGG-HHHHHHHHHHHHH---H---SSCCCE--EEEECCCC--------------------------------
T ss_pred CCcEEeccHHH-HHHHHHHHHHHHH---h---CCCCcc--ccccccccC--------CCc--------------------
Confidence 68999999999 5576655544322 1 223444 355566552 344
Q ss_pred cceeeecCCCcceeccccccccCCCCccCccchhhhhCchhHHHHHHh
Q psy2890 617 IHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIF 664 (893)
Q Consensus 617 ~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~ 664 (893)
+|||||.||.|...+ ++-.++.++=+++.
T Consensus 253 -----------------~KMSKS~~naI~L~d--~~tsp~~i~~ki~~ 281 (356)
T 2pid_A 253 -----------------AKLGKSAGNAVWLNR--DKTSPFELYQFFVR 281 (356)
T ss_dssp --------------------------CCBSST--TTSCHHHHHHHHHT
T ss_pred -----------------ccccCCCCCeeeccC--CCCCHHHHHHHHHc
Confidence 799999999998887 45678888877775
No 58
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=93.95 E-value=0.035 Score=66.71 Aligned_cols=52 Identities=19% Similarity=-0.009 Sum_probs=39.0
Q ss_pred cccccCCCC---------------ccCccchhhh-hCchhHHHHHHhcCCCCCCcccChhhhhHHHHH
Q psy2890 634 EKMSKSKNN---------------GIDPQTQINT-YGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRF 685 (893)
Q Consensus 634 ~KMSKSkgN---------------~i~p~~ii~~-yGaD~lRl~ll~~~~~~~d~~~~~~~i~~~~~~ 685 (893)
+|||||+|| .++..++.++ |.++++|.|++..+--..+...+...++.+.++
T Consensus 306 ~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy~PeAIr~fl~~lG~s~~~~~~e~~~le~~~r~ 373 (851)
T 2hz7_A 306 TITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSRTNRTVDIAVYENAVRD 373 (851)
T ss_dssp CCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHHHHHHHHHSCCCSSCEEECHHHHHHHHHH
T ss_pred ccccccccccccccCcccCCCCcchhHHHHHHHcCCCHHHHHHHHHhcCCCCCcccccHHHHHHHHHh
Confidence 799999987 4566777765 999999999998875444555566667655443
No 59
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=93.49 E-value=0.21 Score=53.90 Aligned_cols=63 Identities=22% Similarity=0.266 Sum_probs=38.0
Q ss_pred CCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcc
Q psy2890 47 PSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGLAI 122 (893)
Q Consensus 47 ~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~ 122 (893)
|||.|||||..+.+.. +.++++ |+++++..| |-|++-. ..++.+ ..++...+..++.++|+..
T Consensus 12 PTg~lHlG~~lg~l~~--~~~lQ~--g~~~~~~ia-D~ha~~~-------~~~~~~-l~~~~~~~~~~~lA~Gldp 74 (322)
T 3tzl_A 12 PSGDLHIGNYFGAIKQ--MVDAQE--KSQMFMFIA-NYHAMTS-------SQDGEK-LKQNSLKAAAAFLSLGIDP 74 (322)
T ss_dssp CSSCCBHHHHHHTHHH--HHHTTT--TSCCEEEEC-HHHHTTT-------CCCHHH-HHHHHHHHHHHHHHTTCCT
T ss_pred CCccccHHHHHHHHHH--HHHHhc--CCCEEEEEe-cCeeecC-------CCCHHH-HHHHHHHHHHHHHHcCCCc
Confidence 5689999998865443 455555 999887776 5555411 123333 3344455666666666643
No 60
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=93.30 E-value=0.085 Score=59.26 Aligned_cols=71 Identities=21% Similarity=0.238 Sum_probs=48.5
Q ss_pred CceeeecchhhHHHHHHHHHHHHHHHHHhcCccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCc
Q psy2890 537 PVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKP 616 (893)
Q Consensus 537 PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~ 616 (893)
.+|+..+|.|| ..|+..+|=+.. ..| ...| ..+++.++.+ .+|.
T Consensus 187 ~~~l~~gG~DQ-~~ni~l~rdlar---r~~---~~~~--~~lt~pll~g--------ldG~------------------- 230 (432)
T 1h3f_A 187 RADVEMGGTDQ-RFNLLVGREVQR---AYG---QSPQ--VCFLMPLLVG--------LDGR------------------- 230 (432)
T ss_dssp TCSEEEEEGGG-HHHHHHHHHHHH---HTT---CCCC--EEEEECCCBC--------TTSS-------------------
T ss_pred CccEEEechHH-HHHHHHHHHHHH---HhC---CCCc--eEeecccccC--------CCCc-------------------
Confidence 37999999999 457665654332 222 2222 3556677653 4441
Q ss_pred cceeeecCCCcceeccccccccCCCCccCccchhhhhCchhHHHHHHhc
Q psy2890 617 IHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFS 665 (893)
Q Consensus 617 ~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~~ 665 (893)
+|||||.||.|..++ .++.++=+++..
T Consensus 231 -----------------~KMSKS~~n~I~L~d-----sp~~i~~Ki~~~ 257 (432)
T 1h3f_A 231 -----------------EKMSKSLDNYIGLTE-----PPEAMFKKLMRV 257 (432)
T ss_dssp -----------------SBCCGGGTCCCBTTS-----CHHHHHHHHHTS
T ss_pred -----------------cccCcCCCCeeCCCC-----CHHHHHHHHhCC
Confidence 599999999999988 788888888853
No 61
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=92.31 E-value=0.068 Score=59.01 Aligned_cols=40 Identities=13% Similarity=0.213 Sum_probs=27.7
Q ss_pred cEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccc
Q psy2890 37 KFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMG 81 (893)
Q Consensus 37 ~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G 81 (893)
+..|++++- |||.|||||.++.+. +.++++ .|+++++..|
T Consensus 35 ~~~vy~G~~-PTG~lHlG~~~~~l~---~~~~~q-~g~~~i~~I~ 74 (372)
T 1n3l_A 35 ELKIYWGTA-TTGKPHVAYFVPMSK---IADFLK-AGCEVTILFA 74 (372)
T ss_dssp CCEEEEEEC-CSSCCBGGGHHHHHH---HHHHHH-TTCEEEEEEC
T ss_pred CCEEEeCcC-CCCcccHHHHHHHHH---HHHHHH-CCCCEEEEEc
Confidence 346666655 789999999876544 444555 7888877666
No 62
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=92.10 E-value=0.16 Score=55.48 Aligned_cols=74 Identities=18% Similarity=0.220 Sum_probs=41.3
Q ss_pred cEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q psy2890 37 KFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLS 116 (893)
Q Consensus 37 ~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~ 116 (893)
++.+++++= |||.|||||..+.+. -+.++++ .++|.+..| |.|++-. ...++.++ .++...+..++.
T Consensus 22 ~~~vysG~~-PTG~lHLGn~~g~l~--~~~~lQ~--~~~~~~~Ia-D~ha~~~------~~~~~e~i-~~~~~~~~~~~l 88 (351)
T 1yi8_B 22 RPRVLTGDR-PTGALHLGHLAGSLQ--NRVRLQD--EAELFVLLA-DVQALTD------HFDRPEQV-RENVLAVALDYL 88 (351)
T ss_dssp CSEEEEEEC-CSSCCBHHHHHHTHH--HHHHHTS--SSEEEEEEC-HHHHHHH------HTTCHHHH-HHHHHHHHHHHH
T ss_pred CcEEEEeeC-CCCCccHHHHHHHHH--HHHHHHH--hCCeEEEEe-cchhhcC------CCCCHHHH-HHHHHHHHHHHH
Confidence 445555542 469999999887542 1223333 377765554 4455421 13455443 344455667777
Q ss_pred HcCCccc
Q psy2890 117 SLGLAID 123 (893)
Q Consensus 117 ~lgi~~D 123 (893)
++|+..+
T Consensus 89 a~Gldp~ 95 (351)
T 1yi8_B 89 AAGLDPQ 95 (351)
T ss_dssp HHTCCTT
T ss_pred HhCCChh
Confidence 8887433
No 63
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=91.66 E-value=0.099 Score=58.19 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=42.5
Q ss_pred CCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCC-C-HHHHHHHHHHHHH
Q psy2890 35 NGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNT-S-PAKWTYDNVSYMK 112 (893)
Q Consensus 35 ~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~-~-~~~~~~~~~~~~~ 112 (893)
++++.|++++ -|||.|||||+++.+. +.++++ .|+++++..| |-|++--. ..+. . .+..+..+...+.
T Consensus 37 ~~p~~vy~G~-~PTG~LHlG~~~~al~---~~~~~q-~g~~~ii~I~-D~ha~t~~----~~~~~e~~~~~~~~~~~~i~ 106 (394)
T 2dlc_X 37 KRHLKLYWGT-APTGRPHCGYFVPMTK---LADFLK-AGCEVTVLLA-DLHAFLDN----MKAPLEVVNYRAKYYELTIK 106 (394)
T ss_dssp CSCCEEEEEE-CCCSCCBGGGHHHHHH---HHHHHH-TTCEEEEEEC-HHHHHHTT----TSSCTTHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEe-CCCCCccHHHHHHHHH---HHHHHH-cCCcEEEEEc-CCccccCC----CCCcHHHHHHHHHHHHHHHH
Confidence 3455666665 2489999999876543 344555 7888876666 32332100 0010 1 1122223345555
Q ss_pred HHHHHcCCccc
Q psy2890 113 KQLSSLGLAID 123 (893)
Q Consensus 113 ~~l~~lgi~~D 123 (893)
..|..+|+..|
T Consensus 107 ~~l~a~Gldp~ 117 (394)
T 2dlc_X 107 AILRSINVPIE 117 (394)
T ss_dssp HHHHHTTCCCT
T ss_pred HHHHHcCCChh
Confidence 66778887444
No 64
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=91.44 E-value=0.16 Score=54.83 Aligned_cols=27 Identities=33% Similarity=0.225 Sum_probs=21.9
Q ss_pred cccccCCCCccCccchhhhhCchhHHHHHHhc
Q psy2890 634 EKMSKSKNNGIDPQTQINTYGADSTRLFIIFS 665 (893)
Q Consensus 634 ~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~~ 665 (893)
+|||||.+|.|...| .++.++=.++.+
T Consensus 191 ~KMSKS~~n~I~L~d-----~p~~i~~KI~~a 217 (322)
T 3tzl_A 191 AKMSKSYQNTIDIFS-----SEKTLKKQISSI 217 (322)
T ss_dssp SBCCGGGTCCCBSSC-----CHHHHHHHHHTC
T ss_pred CcCCCCCCCceecCC-----CHHHHHHHHHhc
Confidence 799999999998876 577777777753
No 65
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=91.20 E-value=0.2 Score=54.42 Aligned_cols=67 Identities=13% Similarity=0.082 Sum_probs=37.8
Q ss_pred CCCcCcchHHHhHHHHHHHHHHHHHcC-CccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCccc
Q psy2890 47 PSGKLHMGHVRNYTINDVMYRYMRMNG-YNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGLAID 123 (893)
Q Consensus 47 ~nG~lHiGH~~~~~~~Di~~R~~r~~G-~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~D 123 (893)
|||.|||||..+.+. -+.++++ .| ++|++..| |-|++-.- .+.++. ...++...+..++.++|+..+
T Consensus 10 PTg~lHlGh~~g~l~--~~~~lQ~-~G~~~~~~~Ia-D~~a~~~~-----~~~~~~-~i~~~~~~~~~~~la~Gldp~ 77 (337)
T 2el7_A 10 PSGEIHIGNYLGAIK--QWVAIGE-KLGRDAFFCIV-DYHALTNP-----LAYDPS-TLAQRTFEAALVNIAAGLDPE 77 (337)
T ss_dssp SCSCCBHHHHHTHHH--HHHHHHH-HHGGGEEEEEC-GGGGGGST-----TTSCHH-HHHHHHHHHHHHHHHHTCCTT
T ss_pred CCCcccHHHHHHHHH--HHHHHHh-cCCCCEEEEEe-CceeecCC-----CCCCHH-HHHHHHHHHHHHHHHhCCChh
Confidence 558999999887642 2334554 46 88866655 33554110 023333 334445556667777777443
No 66
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=91.08 E-value=0.22 Score=56.86 Aligned_cols=32 Identities=13% Similarity=0.187 Sum_probs=27.9
Q ss_pred cccccCCCCccCccchhh-hhCchhHHHHHHhcC
Q psy2890 634 EKMSKSKNNGIDPQTQIN-TYGADSTRLFIIFSA 666 (893)
Q Consensus 634 ~KMSKSkgN~i~p~~ii~-~yGaD~lRl~ll~~~ 666 (893)
+||||++|++ ...++++ .|-++++|.|++..+
T Consensus 261 ~KLSKR~g~~-~l~~~~~~G~~peal~~~l~~lG 293 (481)
T 2o5r_A 261 KKLSKRHGAT-SVEAFRDMGYLPEALVNYLALLG 293 (481)
T ss_dssp SBCCGGGSCC-BHHHHHHHTCCHHHHHHHHHTSS
T ss_pred CcccCcCCcc-cHHHHHHCCCCHHHHHHHHHHhC
Confidence 7999999998 7888887 488999999998764
No 67
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=90.90 E-value=0.39 Score=51.87 Aligned_cols=71 Identities=24% Similarity=0.287 Sum_probs=49.7
Q ss_pred CCceeeecchhhHHHHHHHHHHHHHHHHHhcCccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCC
Q psy2890 536 MPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNK 615 (893)
Q Consensus 536 ~PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~ 615 (893)
+.+|+.++|.||. .|+..+|-+.. .+....|+ .+++.++.+ .+|
T Consensus 169 ~~~~~v~~G~DQ~-~~~~l~rdla~------~~~~~~p~--~l~~pll~~--------l~G------------------- 212 (323)
T 2cyb_A 169 LGVDLAVGGIDQR-KIHMLARENLP------RLGYSSPV--CLHTPILVG--------LDG------------------- 212 (323)
T ss_dssp TTCSEEEEEGGGH-HHHHHHHHHGG------GGTCCCCE--EEEECCCBC--------TTS-------------------
T ss_pred cCCCEEEechhhH-HHHHHHHHHHH------hcCCCCce--EEecCcccC--------CCC-------------------
Confidence 4679999999994 45443442211 12333454 566777763 444
Q ss_pred ccceeeecCCCcceeccccccccCCCCccCccchhhhhCchhHHHHHHhc
Q psy2890 616 PIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFS 665 (893)
Q Consensus 616 ~~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~~ 665 (893)
+|||||.||.|.+.| .+|++|-.++.+
T Consensus 213 ------------------~KMSKS~~n~I~l~d-----~p~~i~~Ki~~a 239 (323)
T 2cyb_A 213 ------------------QKMSSSKGNYISVRD-----PPEEVERKIRKA 239 (323)
T ss_dssp ------------------SBCCTTTTCSCBTTC-----CHHHHHHHHHTS
T ss_pred ------------------CcccCCcCceeCCCC-----CHHHHHHHHHhc
Confidence 799999999999987 499999999864
No 68
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=90.71 E-value=0.28 Score=54.05 Aligned_cols=21 Identities=29% Similarity=0.218 Sum_probs=15.3
Q ss_pred CceeeecchhhHHHHHHHHHHH
Q psy2890 537 PVDQYIGGIEHAILHLLYARFW 558 (893)
Q Consensus 537 PvD~~igG~D~~i~Hl~y~rf~ 558 (893)
-+|+..+|.|| ..|+..+|=+
T Consensus 200 ~ad~vpgG~DQ-~~~l~l~Rdl 220 (373)
T 3vgj_A 200 NVDICQLGIDQ-RKVNMLAREY 220 (373)
T ss_dssp TCSEECCBGGG-HHHHHHHHHH
T ss_pred CCcEEEcchhh-HHHHHHHHHH
Confidence 47999999999 4566555543
No 69
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=90.35 E-value=0.1 Score=64.95 Aligned_cols=53 Identities=11% Similarity=0.056 Sum_probs=45.1
Q ss_pred cCcccCCCcccEEE-eeceeeEEec--chHHHHHHHHHhhCCCChHHHHHHHHhhcc
Q psy2890 176 NGRGWRSDAIIEKK-KIPMYYAKIT--NYAEELLEYVKKKLPYWPKKVRLMQVNWIG 229 (893)
Q Consensus 176 ~g~c~~~~~~v~~~-~~~~~~~~l~--~~~~~l~~~~~~~~~~~p~~~~~~~~~wi~ 229 (893)
.+.|++||.+++.+ .++|||++++ +|++.+++.+ +...-+|+..++...+|+.
T Consensus 446 ~p~~~R~g~~~i~~~~~~qWFi~~~~~~~k~~~l~~~-~~~~~~P~~~~~~~~~~l~ 501 (967)
T 1wz2_A 446 KNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKAL-ERMKILPETRRAQFEAIID 501 (967)
T ss_dssp SCCBCSSSSBCEECCCSSCEEEESCCTTHHHHHHHHH-TTSCEESSTTHHHHHHHHH
T ss_pred CceECCCCCEEEEeccCCccceecCchHHHHHHHHhh-hccEeeCccccchHHHhhh
Confidence 37788999999998 6899999999 4999999999 6665468888888888885
No 70
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=90.04 E-value=0.24 Score=53.31 Aligned_cols=73 Identities=21% Similarity=0.303 Sum_probs=41.5
Q ss_pred CcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy2890 36 GKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQL 115 (893)
Q Consensus 36 ~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l 115 (893)
+++.+++++- |||.||||| +.-+. .+.++++ .|+++++..| |.|++- . . ..++.+ ..++...+..++
T Consensus 27 ~~~~vy~G~~-PTg~lHlGh-l~~l~--~~~~lQ~-~g~~~~~~i~-D~~a~~----~-~-~~~~e~-i~~~~~~~~~~~ 93 (314)
T 2zp1_A 27 DEKSAYIGFE-PSGKIHLGH-YLQIK--KMIDLQN-AGFDIIILLA-DLAAYL----N-Q-KGELDE-IRKIGDYNKKVF 93 (314)
T ss_dssp SSEEEEEEEC-CCSSCBHHH-HHHHH--HHHHHHH-TTEEEEEEEC-HHHHHH----T-T-CCCHHH-HHHHHHHHHHHH
T ss_pred CCCEEEEccC-CCCCcchhh-HHHHH--HHHHHHH-CCCCEEEEEe-cceEec----C-C-CCCHHH-HHHHHHHHHHHH
Confidence 3456666643 368999999 54332 2444444 5888877776 333331 0 1 123333 344556777778
Q ss_pred HHcCCc
Q psy2890 116 SSLGLA 121 (893)
Q Consensus 116 ~~lgi~ 121 (893)
.++|+.
T Consensus 94 ~a~G~d 99 (314)
T 2zp1_A 94 EAMGLK 99 (314)
T ss_dssp HHTTCC
T ss_pred HhcCCC
Confidence 887763
No 71
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=89.62 E-value=0.4 Score=52.68 Aligned_cols=77 Identities=9% Similarity=0.085 Sum_probs=46.4
Q ss_pred CcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy2890 36 GKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQL 115 (893)
Q Consensus 36 ~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l 115 (893)
+++.+++++ -|||.||||| +.-+. -+.++++ .|++|++..| |-|++-. ...|.++.++ .++...+..++
T Consensus 34 ~~~~iy~G~-~PTg~lHlG~-l~~l~--~~~~lQ~-~G~~~~~~ia-D~~a~~~----~ps~~~~e~i-~~~~~~~~~~~ 102 (364)
T 2cya_A 34 ARIKGYIGY-EPSGVAHIGW-LVWMY--KVKDLVE-AGVDFSVLEA-TWHAYIN----DKLGGDMDLI-RAAARIVRRVM 102 (364)
T ss_dssp SCCEEEEEE-CCCSSCBTHH-HHHHH--HHHHHHH-TTCEEEEEEC-HHHHHHT----TGGGGCHHHH-HHHHHHHHHHH
T ss_pred CCCEEEecc-CCCCCccHhH-HHHHH--HHHHHHH-CCCCEEEEEe-CcchhhC----CCCCCCHHHH-HHHHHHHHHHH
Confidence 345666665 3579999999 54332 2444444 5999887777 4444311 1113344443 34456777899
Q ss_pred HHcCCccc
Q psy2890 116 SSLGLAID 123 (893)
Q Consensus 116 ~~lgi~~D 123 (893)
..+|+..+
T Consensus 103 la~G~dp~ 110 (364)
T 2cya_A 103 EAAGVPVE 110 (364)
T ss_dssp HHTTCCGG
T ss_pred HHhCCCcc
Confidence 99998665
No 72
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=88.97 E-value=0.95 Score=49.90 Aligned_cols=77 Identities=8% Similarity=0.037 Sum_probs=49.2
Q ss_pred CCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy2890 35 NGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQ 114 (893)
Q Consensus 35 ~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~ 114 (893)
++++.+++|.= |||.|||||..+. .++.+++..-|..|.+..|-++ +...+..++.+. .++...+..+
T Consensus 80 ~~~~~vysG~~-PTG~lHLGh~v~~---~~~~~lQ~~~g~~v~i~I~D~~-------a~~~r~~~~e~i-~~~~~~~~~~ 147 (386)
T 3hzr_A 80 KKPTFIFIQKY-PQKEVALEEYITL---EFARYLQDAFNIQVIIQILDDI-------KVLNREATINEA-SKMSNDLMKY 147 (386)
T ss_dssp TCCEEEEEEEC-CCSSCBGGGHHHH---HHHHHHHHHHCCEEEEEECHHH-------HHHTTSCCHHHH-HHHHHHHHHH
T ss_pred CCCeEEEeccC-CCCCccHHHHHHH---HHHHHHHHhcCCeEEEEeCchH-------HhhcCCCCHHHH-HHHHHHHHHH
Confidence 45788888864 6788999996664 3344456656888777744321 112223555554 4455567788
Q ss_pred HHHcCCccc
Q psy2890 115 LSSLGLAID 123 (893)
Q Consensus 115 l~~lgi~~D 123 (893)
+.++|+..+
T Consensus 148 ~lA~GlDp~ 156 (386)
T 3hzr_A 148 ILAFGFNED 156 (386)
T ss_dssp HHHTCCCGG
T ss_pred HHHcCCCCc
Confidence 999999776
No 73
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=88.84 E-value=0.58 Score=50.81 Aligned_cols=27 Identities=30% Similarity=0.208 Sum_probs=23.4
Q ss_pred cccccCCCCccCccchhhhhCchhHHHHHHhc
Q psy2890 634 EKMSKSKNNGIDPQTQINTYGADSTRLFIIFS 665 (893)
Q Consensus 634 ~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~~ 665 (893)
.|||||.+|.|...| .++.++=.++.+
T Consensus 204 ~KMSKS~~n~I~L~d-----sp~~i~~Ki~~a 230 (340)
T 2g36_A 204 RKMSKSYGNIINLEI-----SEKELEQTILRM 230 (340)
T ss_dssp SCCCGGGTCCCBTTC-----CHHHHHHHHHTC
T ss_pred cccCCCCCCeEeeeC-----CHHHHHHHHHhC
Confidence 799999999998887 788888888764
No 74
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=88.78 E-value=0.3 Score=53.66 Aligned_cols=27 Identities=30% Similarity=0.161 Sum_probs=21.0
Q ss_pred cccccC-CCCccCccchhhhhCchhHHHHHHhc
Q psy2890 634 EKMSKS-KNNGIDPQTQINTYGADSTRLFIIFS 665 (893)
Q Consensus 634 ~KMSKS-kgN~i~p~~ii~~yGaD~lRl~ll~~ 665 (893)
+||||| .+|.|...|= ++.++=.++.+
T Consensus 237 ~KMSKS~~~~~I~L~d~-----p~~i~~Ki~~a 264 (364)
T 2cya_A 237 VKMSKSKPETAVFVVDS-----DDDIRRKIRKA 264 (364)
T ss_dssp CBCCSSSGGGSCBTTCC-----HHHHHHHHHTS
T ss_pred cccCCCCCCCEeeccCC-----HHHHHHHHHhC
Confidence 799999 6888887764 77777777653
No 75
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=88.78 E-value=0.52 Score=50.96 Aligned_cols=64 Identities=16% Similarity=0.271 Sum_probs=39.3
Q ss_pred CCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCccc
Q psy2890 47 PSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGLAID 123 (893)
Q Consensus 47 ~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~D 123 (893)
|||.|||||..+.+.. +.+++ .|+++++..| |-|++-. ..++.+ ..++...+..++..+|+..+
T Consensus 10 PTG~lHlGn~vg~l~~--~~~lQ--~g~~~~~~Ia-D~ha~~~-------~~~~e~-i~~~~~~~~~~~la~Gldp~ 73 (328)
T 1i6k_A 10 PSGVITIGNYIGALRQ--FVELQ--HEYNCYFCIV-DQHAITV-------WQDPHE-LRQNIRRLAALYLAVGIDPT 73 (328)
T ss_dssp CCSCCBHHHHHHTHHH--HHHHT--TTSEEEEEEC-HHHHTTS-------CCCHHH-HHHHHHHHHHHHHHTTCCTT
T ss_pred CCCcccHHHHHHHHHH--HHHHH--cCCcEEEEEe-CceeecC-------CCCHHH-HHHHHHHHHHHHHHhCCChh
Confidence 5599999998876522 22333 3999877666 4444311 134443 34455677788888887544
No 76
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=88.77 E-value=0.74 Score=50.86 Aligned_cols=78 Identities=18% Similarity=0.199 Sum_probs=49.9
Q ss_pred CCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy2890 35 NGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQ 114 (893)
Q Consensus 35 ~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~ 114 (893)
++++.++++.- |||.|||||..+... ..+++...|.+|.+..| |-|++-. ..+.++.+ ..++...+..+
T Consensus 71 ~~p~~i~sG~~-PTG~lHLGh~v~~~~---~~~lQ~~~g~~~~i~Ia-D~ha~~~-----~~~~~~e~-i~~~~~~~~~~ 139 (392)
T 3jxe_A 71 GRGFFLYTGRG-PSGPMHIGHIIPFFA---TKWLQEKFGVNLYIQIT-DDEKFLF-----KENLTFDD-TKRWAYDNILD 139 (392)
T ss_dssp TCCCEEEEEEC-CSSCCBHHHHHHHHH---HHHHHHHHCCEEEEEEC-HHHHHHH-----CSSCCHHH-HHHHHHHHHHH
T ss_pred CCCeEEEeccC-CCCchhHHHHHHHHH---HHHHHHhcCCceEEEec-chHHhhc-----CCCCCHHH-HHHHHHHHHHH
Confidence 45677777764 559999999887542 22244446999888877 5454311 11345544 44455567778
Q ss_pred HHHcCCccc
Q psy2890 115 LSSLGLAID 123 (893)
Q Consensus 115 l~~lgi~~D 123 (893)
+.++|+..+
T Consensus 140 ~lA~GlDp~ 148 (392)
T 3jxe_A 140 IIAVGFDPD 148 (392)
T ss_dssp HHTTCCCTT
T ss_pred HHHhCcCcc
Confidence 888998776
No 77
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=88.50 E-value=0.49 Score=50.85 Aligned_cols=26 Identities=35% Similarity=0.230 Sum_probs=19.1
Q ss_pred cccccCCCCccCccchhhhhCchhHHHHHHh
Q psy2890 634 EKMSKSKNNGIDPQTQINTYGADSTRLFIIF 664 (893)
Q Consensus 634 ~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~ 664 (893)
+|||||.||.|...|= +|.+|==++.
T Consensus 203 ~KMSKS~~~~I~L~d~-----~~~i~~KI~~ 228 (314)
T 2zp1_A 203 GKMSSSKGNFIAVDDS-----PEEIRAKIKK 228 (314)
T ss_dssp SBCCTTTTCSCBTTCC-----HHHHHHHHHH
T ss_pred cccCCCCcceecCCCC-----HHHHHHHHHh
Confidence 6999999999987663 4555555554
No 78
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=88.35 E-value=0.59 Score=50.96 Aligned_cols=72 Identities=15% Similarity=0.215 Sum_probs=42.0
Q ss_pred EEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Q psy2890 38 FYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSS 117 (893)
Q Consensus 38 ~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~ 117 (893)
..|+++.= |||.|||||..+.+.. +.+++. |+++++..| |-|++-. ..++.+. .++...+..++.+
T Consensus 5 ~~i~sG~~-PTG~lHLGn~vg~l~~--~~~lQ~--~~~~~~~Ia-D~ha~~~-------~~d~~~i-~~~~~~~~~~~lA 70 (348)
T 2yy5_A 5 KRALTGIQ-ASGKQHLGNYLGVMQS--LIELQE--QCQLFVFVA-DLHSITV-------DFQPQAL-KQNNFDLVRTLLA 70 (348)
T ss_dssp CEEEEEEC-CCTTCBHHHHHHTGGG--HHHHHH--HSEEEEEEC-HHHHTTS-------CCCHHHH-HHHHHHHHHHHHH
T ss_pred eEEEEeeC-CCCcccHHHHHHHHHH--HHHHHh--CCcEEEEEc-ChhhccC-------CCCHHHH-HHHHHHHHHHHHH
Confidence 34555543 5599999998865522 224444 788766655 3344311 1345433 3345566777888
Q ss_pred cCCccc
Q psy2890 118 LGLAID 123 (893)
Q Consensus 118 lgi~~D 123 (893)
.|+..+
T Consensus 71 ~Gldp~ 76 (348)
T 2yy5_A 71 VGLDPQ 76 (348)
T ss_dssp TTCCTT
T ss_pred hCCChh
Confidence 887655
No 79
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=87.45 E-value=1.2 Score=50.79 Aligned_cols=32 Identities=9% Similarity=0.145 Sum_probs=27.3
Q ss_pred cccccCCCCccCccchhh-hhCchhHHHHHHhcC
Q psy2890 634 EKMSKSKNNGIDPQTQIN-TYGADSTRLFIIFSA 666 (893)
Q Consensus 634 ~KMSKSkgN~i~p~~ii~-~yGaD~lRl~ll~~~ 666 (893)
.||||++|+ ++..++.+ .|.++++|-|++..+
T Consensus 256 ~KLSKR~g~-~~l~~~r~~G~~peAl~~~l~~lG 288 (498)
T 2ja2_A 256 KKLSKRDPQ-SNLFAHRDRGFIPEGLLNYLALLG 288 (498)
T ss_dssp SBCCTTSGG-GBHHHHHHHTCCHHHHHHHHHTSS
T ss_pred CcccccCCc-ccHHHHHhCCCCHHHHHHHHHHhC
Confidence 799999999 46777776 488999999999865
No 80
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=87.38 E-value=0.59 Score=53.01 Aligned_cols=33 Identities=15% Similarity=0.151 Sum_probs=27.9
Q ss_pred cccccCCCCccCccchhh-hhCchhHHHHHHhcCC
Q psy2890 634 EKMSKSKNNGIDPQTQIN-TYGADSTRLFIIFSAP 667 (893)
Q Consensus 634 ~KMSKSkgN~i~p~~ii~-~yGaD~lRl~ll~~~~ 667 (893)
+||||++||. ...++.+ .|-++++|-|++..+-
T Consensus 242 ~klSKR~g~~-~l~~~~~~G~~peal~~~l~~lG~ 275 (468)
T 1j09_A 242 TKISKRKSHT-SLDWYKAEGFLPEALRNYLCLMGF 275 (468)
T ss_dssp CBCCTTTSCC-BHHHHHHTTCCHHHHHHHHHHHSC
T ss_pred Cccccccchh-hHHHHHHCCCCHHHHHHHHHHhcc
Confidence 7999999998 6777776 4889999999998753
No 81
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=87.10 E-value=0.72 Score=50.76 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=14.0
Q ss_pred cccccCCCC-ccCccchhhhhCchhHHHHHHh
Q psy2890 634 EKMSKSKNN-GIDPQTQINTYGADSTRLFIIF 664 (893)
Q Consensus 634 ~KMSKSkgN-~i~p~~ii~~yGaD~lRl~ll~ 664 (893)
+|||||.+| .|...|= ++.+|=.++.
T Consensus 221 ~KMSKS~~ns~I~L~d~-----p~~i~kKi~~ 247 (372)
T 1n3l_A 221 SKMSSSEEESKIDLLDR-----KEDVKKKLKK 247 (372)
T ss_dssp C-------CCSCBTTCC-----HHHHHHHHHT
T ss_pred ccccCCCCCCeEeccCC-----HHHHHHHHHH
Confidence 799999999 6877654 7888877775
No 82
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=87.10 E-value=0.7 Score=51.29 Aligned_cols=26 Identities=31% Similarity=0.227 Sum_probs=12.1
Q ss_pred cccccCCCCc-cCccchhhhhCchhHHHHHHh
Q psy2890 634 EKMSKSKNNG-IDPQTQINTYGADSTRLFIIF 664 (893)
Q Consensus 634 ~KMSKSkgN~-i~p~~ii~~yGaD~lRl~ll~ 664 (893)
+|||||.+|. |...|= ++.+|=-++.
T Consensus 226 ~KMSKS~~ns~I~L~D~-----p~~i~kKI~k 252 (394)
T 2dlc_X 226 GKMSASDPNSKIDLLEE-----PKQVKKKINS 252 (394)
T ss_dssp --------CCSCBTTCC-----HHHHHHHHHH
T ss_pred CcCCCCCCCCEEeccCC-----HHHHHHHHHH
Confidence 7999999996 877653 5666666664
No 83
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=87.03 E-value=0.53 Score=51.37 Aligned_cols=78 Identities=17% Similarity=0.232 Sum_probs=43.8
Q ss_pred CcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy2890 36 GKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQL 115 (893)
Q Consensus 36 ~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l 115 (893)
+++.++++. -|||.|||||...-+ -.+.++++ .|+++.+..| |-|++- ....|.++.+ ..++...+.+++
T Consensus 39 ~~~~vy~G~-~PTg~lHlGhyl~~l--~~~~~lQ~-~G~~~~~~i~-D~~a~~----~~~~~~~~e~-i~~~~~~~~~~~ 108 (348)
T 2j5b_A 39 RIFTAYNGF-EPSGRIHIAQALITV--MNTNNMIE-CGGQMIIYIA-DWFAKM----NLKMNGDINK-IRELGRYFIEVF 108 (348)
T ss_dssp CCEEEEEEE-CCCSSCBHHHHHHHH--HHHHHHHH-TTEEEEEEEC-HHHHHH----TTGGGGCHHH-HHHHHHHHHHHH
T ss_pred CCCEEEecc-CCCCCCchhHHHHHH--HHHHHHHH-cCCcEEEEec-cchhhh----CCCCCCCHHH-HHHHHHHHHHHH
Confidence 356667765 355999999933322 23445554 4999877766 333321 1111234433 344556666777
Q ss_pred HHcCCccc
Q psy2890 116 SSLGLAID 123 (893)
Q Consensus 116 ~~lgi~~D 123 (893)
..+|+..+
T Consensus 109 la~Gldp~ 116 (348)
T 2j5b_A 109 KACGINLD 116 (348)
T ss_dssp HHTTCCGG
T ss_pred HHhcCCcc
Confidence 77777554
No 84
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=86.98 E-value=1.1 Score=49.41 Aligned_cols=77 Identities=22% Similarity=0.354 Sum_probs=50.1
Q ss_pred CCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy2890 35 NGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQ 114 (893)
Q Consensus 35 ~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~ 114 (893)
+++|+|++|. -|||.|||||..+.. -.+++...|++|.+..+ |.|.+- -......+...++...+..+
T Consensus 68 gk~~~v~sG~-~PTG~lHLGhyv~~~----~~~~lq~~~~~~~~~Ia-D~ha~t------~~~~~~~e~~r~~~~~~~~~ 135 (372)
T 3a04_A 68 GERVAVLTGF-MPSGKFHFGHKLTVD----QLIYLQKNGFKVFVAIA-DAEAFA------VRRIGREEAVRIAVEEYIAN 135 (372)
T ss_dssp TCCCEEEEEE-CCCSCCBHHHHHHHH----HHHHHHHTTCEEEEEEC-HHHHHH------TTCCCHHHHHHHHHHTTHHH
T ss_pred CCCCEEEeCc-CCCcHhHHHHHHHHH----HHHHHHhCCCeEEEEEe-cchhhc------cCCCCCHHHHHHHHHHHHHH
Confidence 5678888875 368999999987532 23444556999876655 444331 12233444455566677788
Q ss_pred HHHcCCccc
Q psy2890 115 LSSLGLAID 123 (893)
Q Consensus 115 l~~lgi~~D 123 (893)
+.++|+..+
T Consensus 136 ~lA~GlDP~ 144 (372)
T 3a04_A 136 MIALGLDPK 144 (372)
T ss_dssp HHHHTCCTT
T ss_pred HHHcCCChH
Confidence 899999877
No 85
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=86.59 E-value=0.48 Score=51.23 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=17.5
Q ss_pred CCceeeecchhhHHHHHHHHHHHHH
Q psy2890 536 MPVDQYIGGIEHAILHLLYARFWTK 560 (893)
Q Consensus 536 ~PvD~~igG~D~~i~Hl~y~rf~~~ 560 (893)
+-+|+..+|.|| ..|+-.+|=+..
T Consensus 136 ~~~~~vpvG~DQ-~~~iel~Rdia~ 159 (328)
T 1i6k_A 136 YNTDIVPVGEDQ-KQHIELTRDLAE 159 (328)
T ss_dssp TTCSEEECCGGG-HHHHHHHHHHHH
T ss_pred hCCCEEecccch-HHHHHHHHHHHH
Confidence 457999999999 557766665443
No 86
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=86.53 E-value=0.51 Score=52.15 Aligned_cols=18 Identities=11% Similarity=-0.143 Sum_probs=13.2
Q ss_pred ceeeecchhhHHHHHHHHH
Q psy2890 538 VDQYIGGIEHAILHLLYAR 556 (893)
Q Consensus 538 vD~~igG~D~~i~Hl~y~r 556 (893)
.|+..+|.|| ..|+..+|
T Consensus 208 a~~vpvG~DQ-~~hl~l~R 225 (392)
T 3jxe_A 208 RCLIPAAIDQ-DPYWRLQR 225 (392)
T ss_dssp CEEEEEEGGG-HHHHHHHH
T ss_pred Cceeecccch-HHHHHHHH
Confidence 6888999999 45655444
No 87
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=86.29 E-value=0.74 Score=49.94 Aligned_cols=27 Identities=33% Similarity=0.171 Sum_probs=21.9
Q ss_pred cccccCCCCccCccchhhhhCchhHHHHHHhc
Q psy2890 634 EKMSKSKNNGIDPQTQINTYGADSTRLFIIFS 665 (893)
Q Consensus 634 ~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~~ 665 (893)
+|||||.+|.|...|= ++.++=.++.+
T Consensus 194 ~KMSKS~~n~I~L~d~-----p~~i~~Ki~~a 220 (337)
T 2el7_A 194 AKMSKSLGNTIGLLEP-----EESIWQKIQHL 220 (337)
T ss_dssp SBCCTTTTCCCBSSSC-----HHHHHHHHHTC
T ss_pred cccCCCCCCeeeCcCC-----HHHHHHHHHhC
Confidence 6999999999888763 77887777754
No 88
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=86.06 E-value=0.61 Score=51.75 Aligned_cols=40 Identities=15% Similarity=0.114 Sum_probs=23.3
Q ss_pred CceeeecchhhHHHHHHHHHHHHHHHHHhcCccCCCccceeeecceEec
Q psy2890 537 PVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILN 585 (893)
Q Consensus 537 PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pfk~l~~~G~v~~ 585 (893)
-.|+..+|.|| ..|+..+|=+..- .+ ..+|+ ++++.++.+
T Consensus 243 ~a~lvpvG~DQ-~~~i~l~Rdla~r---~~---~~~p~--~l~~~~l~g 282 (406)
T 3tze_A 243 AMCLVPAAVDQ-DPFFRLARDKAKA---LG---EKKPS--SIYVSLLPD 282 (406)
T ss_dssp CEEEEEEEGGG-HHHHHHHHHHHHH---HT---CCCCE--EEEECCCCC
T ss_pred CCeEEeeccch-HHHHHHHHHHHHH---cC---CCCce--eeccCcccC
Confidence 36888999999 4566555544332 22 23444 446666653
No 89
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=85.92 E-value=0.58 Score=52.45 Aligned_cols=40 Identities=15% Similarity=0.080 Sum_probs=23.6
Q ss_pred CceeeecchhhHHHHHHHHHHHHHHHHHhcCccCCCccceeeecceEec
Q psy2890 537 PVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILN 585 (893)
Q Consensus 537 PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pfk~l~~~G~v~~ 585 (893)
-+++..+|.|| ..|+..+|=+.. ..+ ..+|. ++++.++.+
T Consensus 249 ~~~lvp~G~DQ-~~~i~l~Rdla~---r~~---~~~p~--~l~~~ll~g 288 (432)
T 2ip1_A 249 TPCLIPCAIDQ-DPYFRVCRDVAD---KLK---YSKPA--LLHSRFFPA 288 (432)
T ss_dssp CCEEEEEEGGG-HHHHHHHHHHHH---HHT---SCCCE--EEEECCCCC
T ss_pred CceEEEeccCc-HHHHHHHHHHHH---HhC---CCCce--eeccccccC
Confidence 36888899999 456655554332 222 24564 356666663
No 90
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=85.43 E-value=0.41 Score=52.98 Aligned_cols=77 Identities=17% Similarity=0.179 Sum_probs=41.5
Q ss_pred CCcEEEEecCCCCCC-cCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2890 35 NGKFYTCSMLPYPSG-KLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKK 113 (893)
Q Consensus 35 ~~~~~i~~~~P~~nG-~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~ 113 (893)
++++.++++.- ||| .|||||.... ..+.+++..-|..|.+..|=+++ +.....++.+. .++...+.+
T Consensus 76 ~~~~~vy~G~~-PTg~~lHLGh~v~~---~~~~~lQ~~~~~~v~i~I~D~~~-------~l~~~~~~e~i-~~~~~~~~~ 143 (395)
T 3i05_A 76 GQPFYLYTGRG-PSSESMHMGHLIPF---MFTKWLQDSFRVPLVIQMTDDEK-------FYFRNIPMEQV-EAMTTENIK 143 (395)
T ss_dssp TCCEEEEEEEC-CCSSCCBGGGSHHH---HHHHHHHHHHTCCEEEEECHHHH-------HHHSCCCHHHH-HHHHHHHHH
T ss_pred CCCeEEEEeec-CCCccchHHHHHHH---HHHHHHHHhcCCcEEEEEcchHH-------HhcCCCCHHHH-HHHHHHHHH
Confidence 35677777754 567 6888886543 23444555556666665443321 22233444433 334445666
Q ss_pred HHHHcCCccc
Q psy2890 114 QLSSLGLAID 123 (893)
Q Consensus 114 ~l~~lgi~~D 123 (893)
++.++|+..+
T Consensus 144 ~~lA~GlDp~ 153 (395)
T 3i05_A 144 DIIAMGFDPE 153 (395)
T ss_dssp HHHTTTCCTT
T ss_pred HHHHcCCCCC
Confidence 6666665443
No 91
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=85.35 E-value=2.2 Score=47.09 Aligned_cols=77 Identities=17% Similarity=0.201 Sum_probs=48.4
Q ss_pred CCcEEEEecCCCCC-CcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHc-CCCHHHHHHHHHHHHH
Q psy2890 35 NGKFYTCSMLPYPS-GKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILN-NTSPAKWTYDNVSYMK 112 (893)
Q Consensus 35 ~~~~~i~~~~P~~n-G~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~-g~~~~~~~~~~~~~~~ 112 (893)
++++.+++++= || |.|||||..... .+.++++.-|..|.+..| .+ .+...+ ..++.+ +.++...+.
T Consensus 72 g~~~~vy~G~~-PTa~~lHlGh~v~~~---~~~~lQ~~~~~~v~i~I~-----D~--~~~~~r~~~~~e~-i~~~~~~~~ 139 (393)
T 3hv0_A 72 GELFYLYTGRG-PSSESLHVGHLVPFL---FTKYLQDTFKVPLVIQLT-----DD--EKFIFKSNLTLEE-THNYAYENM 139 (393)
T ss_dssp TCCCEEEEEEC-CSSSSCBSTTHHHHH---HHHHHHHHHCCCEEEEEC-----HH--HHHHHCTTCCHHH-HHHHHHHHH
T ss_pred CCCeEEEeCCC-CCCCCccHHHHHHHH---HHHHHHHhcCCCeEeecc-----Ch--HHHhhccCCCHHH-HHHHHHHHH
Confidence 44678888865 45 789999965543 355567766777666444 22 122333 555544 444555677
Q ss_pred HHHHHcCCccc
Q psy2890 113 KQLSSLGLAID 123 (893)
Q Consensus 113 ~~l~~lgi~~D 123 (893)
+++.++|+..+
T Consensus 140 ~~~lA~GlDp~ 150 (393)
T 3hv0_A 140 KDIIACGFDPE 150 (393)
T ss_dssp HHHHTTCCCTT
T ss_pred HHHHHcCCCCc
Confidence 88888898665
No 92
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=84.53 E-value=1.2 Score=48.55 Aligned_cols=19 Identities=21% Similarity=0.055 Sum_probs=13.5
Q ss_pred ceeeecchhhHHHHHHHHHH
Q psy2890 538 VDQYIGGIEHAILHLLYARF 557 (893)
Q Consensus 538 vD~~igG~D~~i~Hl~y~rf 557 (893)
+|+..+|.|| ..|+-.+|=
T Consensus 187 ~~~~~~G~DQ-~~~i~l~Rd 205 (348)
T 2j5b_A 187 IDICQLGIDQ-RKVNMLAIE 205 (348)
T ss_dssp CSEECCBGGG-HHHHHHHHH
T ss_pred CcEEEeccCh-HHHHHHHHH
Confidence 5889999999 446554443
No 93
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=84.25 E-value=0.84 Score=51.99 Aligned_cols=32 Identities=6% Similarity=0.003 Sum_probs=27.6
Q ss_pred cccccCCCCccCccchhh-hhCchhHHHHHHhcC
Q psy2890 634 EKMSKSKNNGIDPQTQIN-TYGADSTRLFIIFSA 666 (893)
Q Consensus 634 ~KMSKSkgN~i~p~~ii~-~yGaD~lRl~ll~~~ 666 (893)
+||||++|+ +...++.+ .|-++++|-|++..+
T Consensus 254 ~KLSKR~g~-~~l~~~r~~G~~peal~n~l~~lG 286 (488)
T 3afh_A 254 TPLSKRHGA-TSVEHFRREGILSRALMNYLALLG 286 (488)
T ss_dssp SBCCTTTSC-CBHHHHHHHTCCHHHHHHHHHHTT
T ss_pred CcccCcCCc-ccHHHHHHCCCCHHHHHHHHHHhC
Confidence 799999999 57777777 488999999999865
No 94
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=84.11 E-value=0.84 Score=50.34 Aligned_cols=26 Identities=19% Similarity=0.049 Sum_probs=18.9
Q ss_pred cccccC-CCCccCccchhhhhCchhHHHHHHh
Q psy2890 634 EKMSKS-KNNGIDPQTQINTYGADSTRLFIIF 664 (893)
Q Consensus 634 ~KMSKS-kgN~i~p~~ii~~yGaD~lRl~ll~ 664 (893)
.||||| .+|.|...| .++.+|=-++.
T Consensus 268 ~KMSKSd~~~~I~L~D-----~p~~i~kKI~k 294 (386)
T 3hzr_A 268 TKFDIPSDHNSILLSD-----NAKQVERKINK 294 (386)
T ss_dssp TCCCCCCTTTSCBTTC-----CHHHHHHHHHH
T ss_pred CccCcCCCCCeeecCC-----CHHHHHHHHHH
Confidence 499999 799997765 45566555554
No 95
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=83.98 E-value=0.86 Score=54.16 Aligned_cols=46 Identities=17% Similarity=0.330 Sum_probs=28.5
Q ss_pred CcEEEEecCCCCCCcCcchHHHhHHHHHH-HHHHHHHcCCccccccccccccH
Q psy2890 36 GKFYTCSMLPYPSGKLHMGHVRNYTINDV-MYRYMRMNGYNVLMPMGWDAFGM 87 (893)
Q Consensus 36 ~~~~i~~~~P~~nG~lHiGH~~~~~~~Di-~~R~~r~~G~~V~~~~G~D~~G~ 87 (893)
+++.|++++= |||.||||| .++.-+ +.++++ .|++|.+..| |-|++
T Consensus 39 ~~~~vy~G~~-PTg~lHLG~---~v~~~~~~~~lQ~-~G~~~~~lIa-D~ha~ 85 (690)
T 3p0j_A 39 PLIRCYDGFE-PSGRMHIAQ---GIFKAVNVNKCTA-AGCEFVFWVA-DWFAL 85 (690)
T ss_dssp TTEEEEEEEC-CCSCCBHHH---HHHHHHHHHHHHH-TTEEEEEEEC-CGGGG
T ss_pred CCceEEeeec-CCCcchhHh---hHHHHHHHHHHHH-CCCcEEEEEe-eeEEE
Confidence 3566776653 668999999 333222 444554 5888877766 55665
No 96
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=83.21 E-value=1.4 Score=47.70 Aligned_cols=71 Identities=17% Similarity=0.179 Sum_probs=37.9
Q ss_pred EEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Q psy2890 39 YTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSL 118 (893)
Q Consensus 39 ~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~l 118 (893)
.|+++. -|||.+||||..+.+-. +.+++ .++++.+..+ |-|.+-. ..++.+ ..++...+..++.+.
T Consensus 17 ~i~sG~-~PTG~lHLGh~vg~l~~--~~~lQ--~~~~~~~~ia-D~hA~t~-------~~~~~~-~~~~~~~~~~~~lA~ 82 (346)
T 3n9i_A 17 IVFSGA-QPSGELTIGNYMGALRQ--WVQMQ--DDYDCIYCIV-DLHAITA-------RQDPAL-LRKRTLDTLALYLAC 82 (346)
T ss_dssp EEEEEE-CSCSCCBHHHHHHTHHH--HHTTT--TTSEEEEEEC-HHHHTTS-------CCCHHH-HHHHHHHHHHHHHHH
T ss_pred EEEECc-CCCCcccHHHHHHHHHH--HHHHH--hhCcEEEEEe-cceeecC-------CCCHHH-HHHHHHHHHHHHHHc
Confidence 344443 25689999998765421 12222 3677766554 5444311 234433 334444556666667
Q ss_pred CCccc
Q psy2890 119 GLAID 123 (893)
Q Consensus 119 gi~~D 123 (893)
|+..+
T Consensus 83 GlDp~ 87 (346)
T 3n9i_A 83 GIDPK 87 (346)
T ss_dssp TCCTT
T ss_pred CCCcc
Confidence 77554
No 97
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=83.20 E-value=0.8 Score=53.47 Aligned_cols=32 Identities=6% Similarity=0.003 Sum_probs=27.7
Q ss_pred cccccCCCCccCccchhh-hhCchhHHHHHHhcC
Q psy2890 634 EKMSKSKNNGIDPQTQIN-TYGADSTRLFIIFSA 666 (893)
Q Consensus 634 ~KMSKSkgN~i~p~~ii~-~yGaD~lRl~ll~~~ 666 (893)
.||||++|+ +...++.+ .|-++++|-|++..+
T Consensus 358 ~KLSKR~g~-~~l~~~~~~G~~peal~~~l~~lG 390 (592)
T 3al0_C 358 TPLSKRHGA-TSVEHFRREGILSRALMNYLALLG 390 (592)
T ss_dssp SBCCTTTCS-SBHHHHHHTTCCHHHHHHHHTTTT
T ss_pred CcccccCCc-ccHHHHHHCCCCHHHHHHHHHHhC
Confidence 799999999 57888877 488999999998765
No 98
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=82.54 E-value=1.1 Score=49.26 Aligned_cols=74 Identities=16% Similarity=0.239 Sum_probs=45.5
Q ss_pred CcEE----EEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy2890 36 GKFY----TCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYM 111 (893)
Q Consensus 36 ~~~~----i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~ 111 (893)
++|+ |++|. -|||.|||||..+.+.. +.+++ .|++|.+..+ |-|.+- ...++.++ .++...+
T Consensus 30 ~p~~m~~ri~sG~-~PTG~lHLGhyvGal~~--~~~LQ--~~~~~~~~Ia-D~hAlt-------~~~~~~~l-r~~~~~~ 95 (388)
T 3prh_A 30 DPFTMKQTIFSGI-QPSGSVTLGNYIGAMKQ--FVELQ--HDYNSYFCIV-DQHAIT-------VPQDRLEL-RKNIRNL 95 (388)
T ss_dssp -----CCEEEEEE-CCCSCCBHHHHHHTHHH--HHHTT--TTSEEEEEEC-HHHHTT-------SCCCHHHH-HHHHHHH
T ss_pred CCcccCCeEEEee-CCCCcchHHHHHHHHHH--HHHHH--ccCcEEEEEe-cceeee-------cCCCHHHH-HHHHHHH
Confidence 5677 77775 36799999998875432 22222 4999877665 555541 13455544 4455677
Q ss_pred HHHHHHcCCccc
Q psy2890 112 KKQLSSLGLAID 123 (893)
Q Consensus 112 ~~~l~~lgi~~D 123 (893)
..++.+.|+..+
T Consensus 96 aa~~lA~GlDp~ 107 (388)
T 3prh_A 96 AALYLAVGLDPE 107 (388)
T ss_dssp HHHHHHTTCCTT
T ss_pred HHHHHHhCCChh
Confidence 888889999877
No 99
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=82.35 E-value=1.1 Score=48.44 Aligned_cols=70 Identities=14% Similarity=0.146 Sum_probs=38.1
Q ss_pred EEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Q psy2890 40 TCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLG 119 (893)
Q Consensus 40 i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 119 (893)
|+++. -|||.|||||..+.+-. +.+++. |++|.+..+ |-|.+-. ..++.+ ..++...+..++.+.|
T Consensus 9 v~sG~-~PTG~lHLGhy~g~l~~--~~~lQ~--~~~~~~~ia-D~ha~~~-------~~~~~~-~~~~~~~~~~~~lA~G 74 (341)
T 3sz3_A 9 VLSGV-QPSGELSIGNYLGALRQ--WQQMQD--DYDCQYCVV-DLHAITV-------RQDPQA-LHEATLDALAICLAVG 74 (341)
T ss_dssp EEEEE-CSSSCCBHHHHHHTGGG--HHHHHH--HSEEEEEEC-HHHHTTS-------CCCHHH-HHHHHHHHHHHHHHTT
T ss_pred EEeCc-CCCCcccHHHHHHHHHH--HHHHHh--cCeEEEEEe-cceeEcC-------CCCHHH-HHHHHHHHHHHHHHcC
Confidence 34443 25688999998764421 234444 577766555 4444311 234433 3444455666677777
Q ss_pred Cccc
Q psy2890 120 LAID 123 (893)
Q Consensus 120 i~~D 123 (893)
+..+
T Consensus 75 lDp~ 78 (341)
T 3sz3_A 75 VDPK 78 (341)
T ss_dssp CCTT
T ss_pred CChh
Confidence 7555
No 100
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=82.25 E-value=0.74 Score=51.62 Aligned_cols=78 Identities=19% Similarity=0.169 Sum_probs=47.4
Q ss_pred CCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHc-CCCHHHHHHHHHHHHHH
Q psy2890 35 NGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILN-NTSPAKWTYDNVSYMKK 113 (893)
Q Consensus 35 ~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~-g~~~~~~~~~~~~~~~~ 113 (893)
++++.+++++=...|.|||||..... .+.+++..-|..|.+..| .+ + +...+ ..++.+ +.++...+..
T Consensus 89 g~p~~vytG~dPTagsLHLGH~v~~~---~l~~lQ~~~g~~v~I~Ig-----D~-~-a~~~r~~lt~E~-I~~n~~~~~~ 157 (451)
T 3foc_A 89 GHPIYIYTGRGPSSGALHLGHLLPFI---FTKYLQDAFKCYVVIQIT-----DD-E-KFLRNRSLSYAE-VDSYTRENIK 157 (451)
T ss_dssp TCCEEEEEEECCCSSCCBHHHHHHHH---HHHHHHHHHTCEEEEEEC-----HH-H-HHHHCTTCCHHH-HHHHHHHHHH
T ss_pred CCCeEEEecCCCCCCCccHHHHHHHH---HHHHHHHccCceEEEEee-----Cc-H-HhhcccCCCHHH-HHHHHHHHHH
Confidence 45788888875334899999966543 344566665777777544 33 1 22223 455544 3445556677
Q ss_pred HHHHcCCccc
Q psy2890 114 QLSSLGLAID 123 (893)
Q Consensus 114 ~l~~lgi~~D 123 (893)
++.++|+..+
T Consensus 158 ~~lA~GlDpe 167 (451)
T 3foc_A 158 DIIACGFDPD 167 (451)
T ss_dssp HHHTTTCCGG
T ss_pred HHHHcCCCCC
Confidence 7777787544
No 101
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=82.25 E-value=0.91 Score=49.99 Aligned_cols=78 Identities=12% Similarity=-0.011 Sum_probs=41.9
Q ss_pred cEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHH---HH-HHHHHHHH
Q psy2890 37 KFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAK---WT-YDNVSYMK 112 (893)
Q Consensus 37 ~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~---~~-~~~~~~~~ 112 (893)
++.+++++= |||.|||||...-+. -+.++++ .|+++.+..| |-|++- ....|.++.+ .+ ..+...+.
T Consensus 33 ~~~vy~G~~-PTg~lHlG~yl~~l~--~~~~lQ~-~G~~~~~~ia-D~ha~~----~~~~g~~~e~i~~~~~~~~~~~~~ 103 (375)
T 2cyc_A 33 PLQHYIGFE-ISGYIHLGTGLMAGA--KIADFQK-AGIKTRVFLA-DWHSWI----NDKLGGDLEVIQEVALKYFKVGME 103 (375)
T ss_dssp CCBEEEEEC-CCSCCBHHHHHHHHH--HHHHHHH-TTCBCEEEEC-HHHHHH----TTGGGGCHHHHHHHHHHTHHHHHH
T ss_pred CcEEEeCCC-CCCCcCchHHHHHHH--HHHHHHH-CCCcEEEEec-CcEEEc----CCCCCCCHHHHHHHHHHHHHHHHH
Confidence 445666642 568999999544322 2445554 5899877766 333321 1112334433 33 33333444
Q ss_pred HHHHHcCCccc
Q psy2890 113 KQLSSLGLAID 123 (893)
Q Consensus 113 ~~l~~lgi~~D 123 (893)
.++..+|+..+
T Consensus 104 ~~~la~G~dp~ 114 (375)
T 2cyc_A 104 KSIEVMGGDPK 114 (375)
T ss_dssp HHHHHTTCCGG
T ss_pred HHHHHhCCCcc
Confidence 77888887443
No 102
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=82.16 E-value=1.8 Score=48.40 Aligned_cols=79 Identities=10% Similarity=0.124 Sum_probs=48.9
Q ss_pred CCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy2890 35 NGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQ 114 (893)
Q Consensus 35 ~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~ 114 (893)
++++.+++++=...|.|||||....+. +.+++...|+++++..| |.|+.- . ....++.. ..++...+..+
T Consensus 100 g~~~~vy~G~dPTag~LHLGh~v~~~~---l~~lQ~~~g~~~i~lI~-D~ta~l-~----~~~~t~e~-i~~~~~~~~~~ 169 (432)
T 2ip1_A 100 GKPFFLYTGRGPSSDSMHLGHMIPFVF---TKWLQEVFDVPLVIELT-DDEKFL-F----KHKLTIND-VKNFARENAKD 169 (432)
T ss_dssp TCCCEEEEEECCCSSCCBGGGHHHHHH---HHHHHHHHTCCEEEEEC-HHHHHH-H----CTTCCHHH-HHHHHHHHHHH
T ss_pred CCCeEEEEeecCCCCCccHHHHHHHHH---HHHHHHHcCCeEEEEEe-ccccee-C----CCCCCHHH-HHHHHHHHHHH
Confidence 346788888753338999999886542 33556557998888877 434321 0 11244433 45555556777
Q ss_pred HHHcCCccc
Q psy2890 115 LSSLGLAID 123 (893)
Q Consensus 115 l~~lgi~~D 123 (893)
+.++|+..+
T Consensus 170 ~lA~GlDp~ 178 (432)
T 2ip1_A 170 IIAVGFDPK 178 (432)
T ss_dssp HHTTTCCGG
T ss_pred HHHhCCCCC
Confidence 888887655
No 103
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=82.13 E-value=2.2 Score=47.15 Aligned_cols=25 Identities=20% Similarity=0.057 Sum_probs=9.0
Q ss_pred cccccCCCCccCccchhhhhCchhHHHHHH
Q psy2890 634 EKMSKSKNNGIDPQTQINTYGADSTRLFII 663 (893)
Q Consensus 634 ~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll 663 (893)
.|||||.+|.|...| .++.+|==++
T Consensus 269 ~KMSKS~~~~I~L~D-----~p~~i~kKI~ 293 (395)
T 3i05_A 269 GKMSSSSGTAVLLTD-----TEKMVKDKIN 293 (395)
T ss_dssp ---------CCBTTC-----CHHHHHHHHC
T ss_pred ccCCCCCCCcccCCC-----CHHHHHHHHH
Confidence 499999999997665 3445544443
No 104
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=81.46 E-value=2.3 Score=46.73 Aligned_cols=76 Identities=18% Similarity=0.298 Sum_probs=44.5
Q ss_pred cEEEEecCCCCCCcCcchHHHhHHHHH-HHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy2890 37 KFYTCSMLPYPSGKLHMGHVRNYTIND-VMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQL 115 (893)
Q Consensus 37 ~~~i~~~~P~~nG~lHiGH~~~~~~~D-i~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~l 115 (893)
+..|++++- |||.||||| .++.- .+.++++ .|++|.+..| |-|++ +- ...|.++.+ ..++...+.+.+
T Consensus 56 ~~~iy~G~~-PTg~lHlG~---gvl~~~~~~~lQ~-~G~~~~~lIa-D~ha~-i~---d~~~~~~~~-i~~~~~~~~~~~ 124 (373)
T 3vgj_A 56 KLICYDGFE-PSGRMHIAQ---GLLKSIIVNKLTS-NGCTFIFWIA-DWFAH-LN---NKMSGDLKK-IKKVGSYFIEVW 124 (373)
T ss_dssp SCEEEEEEC-CCSSCBHHH---HHHHHHHHHHHHT-TTCEEEEEEC-HHHHH-HT---TGGGGCHHH-HHHHHHHHHHHH
T ss_pred CceEEeCCC-CCCCceehh---hHHHHHHHHHHHH-CCCcEEEEEe-cceeE-ec---CCCCCCHHH-HHHHHHHHHHHH
Confidence 445666653 568999999 23332 2445544 5999887777 55554 10 012333433 234445567789
Q ss_pred HHcCCccc
Q psy2890 116 SSLGLAID 123 (893)
Q Consensus 116 ~~lgi~~D 123 (893)
..+|+..+
T Consensus 125 ~a~G~dp~ 132 (373)
T 3vgj_A 125 KSCGMNME 132 (373)
T ss_dssp HHTTCCST
T ss_pred HHcCCChh
Confidence 99998766
No 105
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=80.94 E-value=0.95 Score=50.06 Aligned_cols=15 Identities=40% Similarity=0.290 Sum_probs=4.4
Q ss_pred cccccCCCC-ccCccc
Q psy2890 634 EKMSKSKNN-GIDPQT 648 (893)
Q Consensus 634 ~KMSKSkgN-~i~p~~ 648 (893)
.|||||.+| .|...|
T Consensus 265 ~KMSKS~~nsaI~L~D 280 (393)
T 3hv0_A 265 TKMSASVQNSSIFVND 280 (393)
T ss_dssp --------CCCCBTTC
T ss_pred cCCCCCCCCCeEeccC
Confidence 499999998 676544
No 106
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=80.62 E-value=1.6 Score=47.56 Aligned_cols=24 Identities=21% Similarity=0.099 Sum_probs=17.6
Q ss_pred CCceeeecchhhHHHHHHHHHHHHH
Q psy2890 536 MPVDQYIGGIEHAILHLLYARFWTK 560 (893)
Q Consensus 536 ~PvD~~igG~D~~i~Hl~y~rf~~~ 560 (893)
+-+|+..+|.|| ..|+-.+|=+..
T Consensus 146 ~~a~~vpvG~DQ-~~~lel~Rdia~ 169 (348)
T 2yy5_A 146 YQPDIVPVGNDQ-KQHLELTRDLAQ 169 (348)
T ss_dssp TCCSEEECCGGG-HHHHHHHHHHHH
T ss_pred hCccEEEecccH-HHHHHHHHHHHH
Confidence 457999999999 557766665544
No 107
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=80.38 E-value=2.6 Score=47.12 Aligned_cols=78 Identities=14% Similarity=0.178 Sum_probs=46.9
Q ss_pred CCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy2890 35 NGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQ 114 (893)
Q Consensus 35 ~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~ 114 (893)
++++.+++++=...|.|||||....+. +.+++...|.++++..|= .|+.-- ..+++.+ ..++...+..+
T Consensus 106 ~~~~~vy~G~dPTag~LHLGh~v~~~~---~~~lQ~~~G~~~iilIgD-~ta~ig------d~lt~e~-i~~n~~~~~~~ 174 (437)
T 1r6u_A 106 KKPFYLYTGRGPSSEAMHVGHLIPFIF---TKWLQDVFNVPLVIQMTD-DEKYLW------KDLTLDQ-AYGDAVENAKD 174 (437)
T ss_dssp TCCEEEEEEECCCSSCCBHHHHHHHHH---HHHHHHHHTCCEEEEECH-HHHHHH------SSCCHHH-HHHHHHHHHHH
T ss_pred CCCcEEEEcccCCCCCccHHHHHHHHH---HHHHHHHhCCcEEEEEec-ceeeec------CCCCHHH-HHHHHHHHHHH
Confidence 457888888753348999999887542 335555468887777662 232211 1355444 34444455666
Q ss_pred HHHcCCccc
Q psy2890 115 LSSLGLAID 123 (893)
Q Consensus 115 l~~lgi~~D 123 (893)
+..+|+..+
T Consensus 175 ~lA~GlDp~ 183 (437)
T 1r6u_A 175 IIACGFDIN 183 (437)
T ss_dssp HHTTTCCGG
T ss_pred HHHhCCCcc
Confidence 777776543
No 108
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=79.03 E-value=4.7 Score=45.18 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=12.6
Q ss_pred cCCccccccccccc-c
Q psy2890 72 NGYNVLMPMGWDAF-G 86 (893)
Q Consensus 72 ~G~~V~~~~G~D~~-G 86 (893)
.|..+....|+|.. |
T Consensus 88 ~g~p~~vytG~dPTag 103 (451)
T 3foc_A 88 KGHPIYIYTGRGPSSG 103 (451)
T ss_dssp TTCCEEEEEEECCCSS
T ss_pred cCCCeEEEecCCCCCC
Confidence 67888899999988 5
No 109
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=78.78 E-value=1.4 Score=50.12 Aligned_cols=15 Identities=40% Similarity=0.277 Sum_probs=12.4
Q ss_pred cccccCCCC-ccCccc
Q psy2890 634 EKMSKSKNN-GIDPQT 648 (893)
Q Consensus 634 ~KMSKSkgN-~i~p~~ 648 (893)
.|||||.+| .|...+
T Consensus 348 ~KMSKS~~nsaI~L~d 363 (477)
T 1r6t_A 348 TKMSASDPNSSIFLTD 363 (477)
T ss_dssp EECCTTSTTCCCBTTC
T ss_pred cccCCCCCCCceeecC
Confidence 599999999 787655
No 110
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=78.60 E-value=1.9 Score=47.34 Aligned_cols=26 Identities=27% Similarity=0.171 Sum_probs=20.3
Q ss_pred cccccCC-CCccCccchhhhhCchhHHHHHHh
Q psy2890 634 EKMSKSK-NNGIDPQTQINTYGADSTRLFIIF 664 (893)
Q Consensus 634 ~KMSKSk-gN~i~p~~ii~~yGaD~lRl~ll~ 664 (893)
.|||||. +|.|...|= ++.+|=.++.
T Consensus 250 ~KMSKS~~~~~I~L~d~-----p~~i~~KI~~ 276 (375)
T 2cyc_A 250 MKMSKSKPYSAVFIHDS-----PEEIRQKLRK 276 (375)
T ss_dssp HBGGGSCGGGSCBTTCC-----HHHHHHHHHH
T ss_pred hcccCCCCCCeeccCCC-----HHHHHHHHHH
Confidence 6999999 788877664 6777777765
No 111
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=78.30 E-value=3.2 Score=45.98 Aligned_cols=77 Identities=16% Similarity=0.205 Sum_probs=49.0
Q ss_pred CCcEEEEecCCCCCC-cCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy2890 35 NGKFYTCSMLPYPSG-KLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKK 113 (893)
Q Consensus 35 ~~~~~i~~~~P~~nG-~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~ 113 (893)
++++.++++.- ||| .|||||.... ..+.+++..-|..+.+..| |.|.. .-...++.+ ..++...+..
T Consensus 99 ~~p~~vy~G~~-PTg~~lHLGh~v~~---~~~~~lQ~~~g~~~~i~Ia-D~~a~------l~~~~~~e~-i~~~~~~~~~ 166 (406)
T 3tze_A 99 NRPFYLYTGRG-PSSKTMHIGHTIPF---LLCKYMQDAFKIRLVIQIT-DDEKF------LWKSMRLED-AMAYGRENIK 166 (406)
T ss_dssp TCCEEEEEEEC-CCSSCCBGGGHHHH---HHHHHHHHHHTCCEEEEEC-HHHHH------HHSSCCHHH-HHHHHHHHHH
T ss_pred CCCeEEEEeeC-CCCCcccHHHHHHH---HHHHHHHHhcCCcEEEEee-ChHHH------cCCCCCHHH-HHHHHHHHHH
Confidence 46788888864 667 8999997654 2344456655877766544 33321 112355544 4455567788
Q ss_pred HHHHcCCccc
Q psy2890 114 QLSSLGLAID 123 (893)
Q Consensus 114 ~l~~lgi~~D 123 (893)
++.++|+..+
T Consensus 167 ~~lA~GlDp~ 176 (406)
T 3tze_A 167 DIVTLGFDPK 176 (406)
T ss_dssp HHHTTTCCGG
T ss_pred HHHHcCCCcc
Confidence 8889998766
No 112
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=77.96 E-value=1.5 Score=49.12 Aligned_cols=15 Identities=40% Similarity=0.277 Sum_probs=12.6
Q ss_pred cccccCCCC-ccCccc
Q psy2890 634 EKMSKSKNN-GIDPQT 648 (893)
Q Consensus 634 ~KMSKSkgN-~i~p~~ 648 (893)
.|||||.+| .|...+
T Consensus 301 ~KMSKS~~nsaI~L~D 316 (437)
T 1r6u_A 301 TKMSASDPNSSIFLTD 316 (437)
T ss_dssp EECCTTSSSSCCBTTC
T ss_pred cccCCCCCCCeeeccC
Confidence 599999999 787755
No 113
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=77.27 E-value=4.2 Score=48.25 Aligned_cols=20 Identities=15% Similarity=0.200 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHcCCccc
Q psy2890 104 TYDNVSYMKKQLSSLGLAID 123 (893)
Q Consensus 104 ~~~~~~~~~~~l~~lgi~~D 123 (893)
..++...+.+++..+|+..+
T Consensus 97 i~~~~~~~~~~~lA~GlDp~ 116 (690)
T 3p0j_A 97 IRIVGRYLIEVWKAAGMDMD 116 (690)
T ss_dssp HHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHHHcCCChH
Confidence 34455667778999998766
No 114
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=77.22 E-value=2.1 Score=47.27 Aligned_cols=75 Identities=19% Similarity=0.267 Sum_probs=40.0
Q ss_pred cEEEEecCCCCCCc-CcchHHHhHHHHHHHHHHHHHcCCccccccccccccH---HHHHHHHHcC-CCHHHHHHHHHHHH
Q psy2890 37 KFYTCSMLPYPSGK-LHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGM---PAENAAILNN-TSPAKWTYDNVSYM 111 (893)
Q Consensus 37 ~~~i~~~~P~~nG~-lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~---pie~~a~~~g-~~~~~~~~~~~~~~ 111 (893)
+..+++++= |||. |||||... + -.+.++++ .|+++++..| |-||+ |--. ...+. .++. -..++...+
T Consensus 64 ~~~vy~G~d-PTg~sLHlGhlv~-l--~~l~~lQ~-~G~~~~~lIg-D~haligdpsgk-~~~R~~~~~e-~i~~n~~~i 135 (392)
T 1y42_X 64 RIGAYVGID-PTAPSLHVGHLLP-L--MPLFWMYL-EGYKAFTLIG-GSTAKIGDPTGR-LKSRDHLSSS-DATMNMTKI 135 (392)
T ss_dssp CCEEEEEEC-CCSSSCBGGGHHH-H--HHHHHHHH-HTCEEEEEEC-TTTTTTCCCCC-------------CHHHHHHHH
T ss_pred CCEEEEeec-CCCCCccHHHHHH-H--HHHHHHHH-cCCcEEEEEc-CceeEeCCCCCc-chhhccCCHH-HHHHHHHHH
Confidence 456666653 5688 99999773 2 23556654 4999887766 33333 2100 11111 1232 234566777
Q ss_pred HHHHHHcC
Q psy2890 112 KKQLSSLG 119 (893)
Q Consensus 112 ~~~l~~lg 119 (893)
+.++.++|
T Consensus 136 ~~~~~a~~ 143 (392)
T 1y42_X 136 HYQLKKLW 143 (392)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777776
No 115
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=76.90 E-value=2.5 Score=46.51 Aligned_cols=25 Identities=20% Similarity=0.114 Sum_probs=18.6
Q ss_pred CCceeeecchhhHHHHHHHHHHHHHH
Q psy2890 536 MPVDQYIGGIEHAILHLLYARFWTKL 561 (893)
Q Consensus 536 ~PvD~~igG~D~~i~Hl~y~rf~~~~ 561 (893)
+-+|+..+|.|| ..|+-.+|=+..-
T Consensus 170 ~~ad~vPvG~DQ-~~hleltRdia~r 194 (388)
T 3prh_A 170 YGTDLVPPGEDQ-KQHLELTRNLAER 194 (388)
T ss_dssp TTCCEECCCSSC-HHHHHHHHHHHHH
T ss_pred hCCCEEEechhH-HHHHHHHHHHHHH
Confidence 458999999999 5677767765443
No 116
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=76.78 E-value=3.5 Score=45.98 Aligned_cols=73 Identities=15% Similarity=0.113 Sum_probs=47.2
Q ss_pred CceeeecchhhHHHHHHHHHHHHHHHHHhcCccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCc
Q psy2890 537 PVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKP 616 (893)
Q Consensus 537 PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~ 616 (893)
.+|+.+||.|| ..|+..+|=...-+ + ...+|| .+++.++.+ .+|
T Consensus 186 ~~~i~~gG~DQ-~~ni~~grdla~r~---~--~~~~~~--~l~~pll~~--------ldG-------------------- 229 (420)
T 1jil_A 186 NCKIQVGGSDQ-WGNITSGIELMRRM---Y--GQTDAY--GLTIPLVTK--------SDG-------------------- 229 (420)
T ss_dssp CEEEEEEEGGG-HHHHHHHHHHHHHH---H--CCCCCE--EEEECCCBC--------TTS--------------------
T ss_pred CCcEEeccHHH-HHHHHHHHHHHHHh---c--CCCCee--EeecccccC--------Ccc--------------------
Confidence 68999999999 55766565443322 0 122333 455566652 444
Q ss_pred cceeeecCCCcceeccccccccCCCCccCccchhhhhCchhHHHHHHh
Q psy2890 617 IHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIF 664 (893)
Q Consensus 617 ~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~ 664 (893)
+|||||.||.|..++ ++-.++.++=+++.
T Consensus 230 -----------------~KMSKS~~naI~L~d--~~tsp~~i~~ki~~ 258 (420)
T 1jil_A 230 -----------------KKFGKSESGAVWLDA--EKTSPYEFYQFWIN 258 (420)
T ss_dssp -----------------CBTTBCSSSBCBSST--TTSCHHHHHHHHHT
T ss_pred -----------------ccccCCCCCeEecCC--CCCCHHHHHHHHhc
Confidence 799999999998876 34566777666664
No 117
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=76.43 E-value=1.7 Score=47.15 Aligned_cols=25 Identities=24% Similarity=0.105 Sum_probs=18.2
Q ss_pred CceeeecchhhHHHHHHHHHHHHHHH
Q psy2890 537 PVDQYIGGIEHAILHLLYARFWTKLM 562 (893)
Q Consensus 537 PvD~~igG~D~~i~Hl~y~rf~~~~l 562 (893)
-+|+..+|.|| ..|+..+|=+..-+
T Consensus 143 ~ad~vpvG~DQ-~~hlel~Rdia~rf 167 (341)
T 3sz3_A 143 GAHQVPVGSDQ-KQHLELARDIATRF 167 (341)
T ss_dssp TCSEECCCGGG-HHHHHHHHHHHHHH
T ss_pred CCCEEEeccch-HHHHHHHHHHHHHh
Confidence 46899999999 56777777655433
No 118
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=76.34 E-value=3.7 Score=46.50 Aligned_cols=78 Identities=14% Similarity=0.178 Sum_probs=46.9
Q ss_pred CCcEEEEecCCCCCCcCcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy2890 35 NGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQ 114 (893)
Q Consensus 35 ~~~~~i~~~~P~~nG~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~a~~~g~~~~~~~~~~~~~~~~~ 114 (893)
++++.+++++=...|.|||||....+. ..+++..-|.+|++..|= .|+.-- ..+++.+ ..++...+..+
T Consensus 153 ~~~~~vy~G~dPTag~LHLGh~v~~~~---~~~lQ~~~g~~~iilI~D-~~a~ig------d~lt~e~-i~~n~~~~~~~ 221 (477)
T 1r6t_A 153 KKPFYLYTGRGPSSEAMHVGHLIPFIF---TKWLQDVFNVPLVIQMTD-DEKYLW------KDLTLDQ-AYGDAVENAKD 221 (477)
T ss_dssp TCCEEEEEEECCCTTCCBGGGHHHHHH---HHHHHHHHTCCEEEEECH-HHHHHH------SSCCHHH-HHHHHHHHHHH
T ss_pred CCCcEEEEcccCCCCCccHHHHHHHHH---HHHHHHHhCCcEEEEEec-ceeeec------CCCCHHH-HHHHHHHHHHH
Confidence 457888888753348999999887542 334555478887776663 222200 1345444 34444555667
Q ss_pred HHHcCCccc
Q psy2890 115 LSSLGLAID 123 (893)
Q Consensus 115 l~~lgi~~D 123 (893)
+..+|+..+
T Consensus 222 ~lA~GlDp~ 230 (477)
T 1r6t_A 222 IIACGFDIN 230 (477)
T ss_dssp HHTTCCCTT
T ss_pred HHHhCCCCC
Confidence 777776544
No 119
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=75.42 E-value=3.6 Score=45.78 Aligned_cols=73 Identities=15% Similarity=0.072 Sum_probs=46.8
Q ss_pred CceeeecchhhHHHHHHHHHHHHHHHHHhcCccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCc
Q psy2890 537 PVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKP 616 (893)
Q Consensus 537 PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~ 616 (893)
.+|+.+||.|| ..|+..+|=...-+ + ...+|| .+++.++.+ .+|
T Consensus 185 ~~~i~~gG~DQ-~~ni~lgrdlarr~---~--~~~~~~--~lt~pll~~--------ldG-------------------- 228 (419)
T 2ts1_A 185 GCRLQIGGSDQ-WGNITAGLELIRKT---K--GEARAF--GLTIPLVTK--------ADG-------------------- 228 (419)
T ss_dssp CEEEEEEEGGG-HHHHHHHHHHHHHH---H--C--CCE--EEEECCCCC--------TTS--------------------
T ss_pred CCcEEeccHHH-HHHHHHHHHHHHHh---c--CCCCee--ecccccccC--------CCc--------------------
Confidence 68999999999 55666565443322 0 122333 455566552 444
Q ss_pred cceeeecCCCcceeccccccccCCCCccCccchhhhhCchhHHHHHHh
Q psy2890 617 IHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIF 664 (893)
Q Consensus 617 ~~~~~~~~g~~~~~~~~~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~ 664 (893)
+|||||.||.|..++ ++-.++.++=+++.
T Consensus 229 -----------------~KMSKS~~naI~L~d--~~tsp~~i~qki~~ 257 (419)
T 2ts1_A 229 -----------------TKFGKTESGTIWLDK--EKTSPYEFYQFWIN 257 (419)
T ss_dssp -----------------CCTTCCSSCCCBSST--TTSCHHHHHHHHHT
T ss_pred -----------------ccccCCCCCeEecCC--CCCCHHHHHHHHhc
Confidence 799999999998876 34567777766764
No 120
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=75.17 E-value=4 Score=43.81 Aligned_cols=75 Identities=19% Similarity=0.305 Sum_probs=39.4
Q ss_pred cEEEEecCCCCCCc-CcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHHH--HHHcC-CCHHHHHHHHHHHHH
Q psy2890 37 KFYTCSMLPYPSGK-LHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENA--AILNN-TSPAKWTYDNVSYMK 112 (893)
Q Consensus 37 ~~~i~~~~P~~nG~-lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~~--a~~~g-~~~~~~~~~~~~~~~ 112 (893)
++.|+++.- |||. |||||... --.+.+++ ..|+++++..| |-|++-.-.. -.++. .++.+ ..++.+.++
T Consensus 33 ~~~vy~G~~-PTg~slHlGh~l~---l~~~~~lQ-~~g~~~~~~i~-D~~a~~~dp~g~~~~R~~l~~e~-i~~n~~~~~ 105 (322)
T 2yxn_A 33 PIALVCGFD-PTADSLHLGHLVP---LLCLKRFQ-QAGHKPVALVG-GATGLIGDPSFKAAERKLNTEET-VQEWVDKIR 105 (322)
T ss_dssp CCEEEEEEC-CSSSSCBHHHHHH---HHHHHHHH-HTTCEEEEEEC-TTGGGTCCCTTCSSCCCCCCHHH-HHHHHHHHH
T ss_pred CCEEEEeec-CCCCcccHHHHHH---HHHHHHHH-HcCCcEEEEEc-cceeeecCCCCcccccccCCHHH-HHHHHHHHH
Confidence 456666653 5688 99999662 22345555 35999877776 3344310000 00111 23433 445555666
Q ss_pred HHHHHc
Q psy2890 113 KQLSSL 118 (893)
Q Consensus 113 ~~l~~l 118 (893)
+++..+
T Consensus 106 ~~~~~~ 111 (322)
T 2yxn_A 106 KQVAPF 111 (322)
T ss_dssp HHHGGG
T ss_pred HHHHHH
Confidence 666554
No 121
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=74.68 E-value=2.3 Score=46.33 Aligned_cols=26 Identities=35% Similarity=0.257 Sum_probs=20.8
Q ss_pred cccccCCCCccCccchhhhhCchhHHHHHHh
Q psy2890 634 EKMSKSKNNGIDPQTQINTYGADSTRLFIIF 664 (893)
Q Consensus 634 ~KMSKSkgN~i~p~~ii~~yGaD~lRl~ll~ 664 (893)
.|||||.+|.|...|= ++.++=.++.
T Consensus 214 ~KMSKS~~n~I~L~d~-----p~~i~~Ki~~ 239 (351)
T 1yi8_B 214 AKMSKSLGNAIALGDS-----ADEVARKVMG 239 (351)
T ss_dssp SCCCTTTTCCCBTTCC-----HHHHHHHHHT
T ss_pred cccCCCCCCeecCCCC-----HHHHHHHHHh
Confidence 4999999998877664 7777777775
No 122
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=71.72 E-value=2.4 Score=44.99 Aligned_cols=10 Identities=30% Similarity=0.391 Sum_probs=0.0
Q ss_pred cccccCCCCc
Q psy2890 634 EKMSKSKNNG 643 (893)
Q Consensus 634 ~KMSKSkgN~ 643 (893)
+|||||+||.
T Consensus 227 ~KLSKR~g~~ 236 (298)
T 1nzj_A 227 AKLSKQNHAP 236 (298)
T ss_dssp ----------
T ss_pred CcccccCCcc
Confidence 8999999997
No 123
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=68.93 E-value=3.2 Score=44.94 Aligned_cols=24 Identities=21% Similarity=0.099 Sum_probs=17.6
Q ss_pred CceeeecchhhHHHHHHHHHHHHHH
Q psy2890 537 PVDQYIGGIEHAILHLLYARFWTKL 561 (893)
Q Consensus 537 PvD~~igG~D~~i~Hl~y~rf~~~~ 561 (893)
-+|+..+|.|| ..|+-.+|=+..-
T Consensus 152 ~ad~vpvG~DQ-~~hleltRdia~r 175 (346)
T 3n9i_A 152 QTNQVPVGEDQ-KQHLELSRDIASR 175 (346)
T ss_dssp TCSEECCCGGG-HHHHHHHHHHHHH
T ss_pred CceEEEeccch-HHHHHHHHHHHHH
Confidence 46899999999 5577667765443
No 124
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=61.57 E-value=4.5 Score=29.80 Aligned_cols=32 Identities=16% Similarity=-0.201 Sum_probs=25.1
Q ss_pred eeecCCCCcccccchhc--c-CcccCCCcccEEEe
Q psy2890 159 VNWDPIEKTVLANEQVI--N-GRGWRSDAIIEKKK 190 (893)
Q Consensus 159 v~~~~~~~t~l~~~ev~--~-g~c~~~~~~v~~~~ 190 (893)
.|-|-+|++..+++|+. - =+||.||..|.++.
T Consensus 3 iY~C~rCg~~fs~~el~~lP~IrCpyCGyrii~Kv 37 (48)
T 4ayb_P 3 VYRCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFMV 37 (48)
T ss_dssp --CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEECC
T ss_pred EEEeeccCCCccHHHHhhCCCcccCccCcEEEEEe
Confidence 46699999999999984 2 38999999987764
No 125
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=54.66 E-value=7.4 Score=43.48 Aligned_cols=46 Identities=26% Similarity=0.359 Sum_probs=28.6
Q ss_pred CcEEEEecCCCCCC-cCcchHHHhHHHHHHHHHHHHHcCCccccccccccccH
Q psy2890 36 GKFYTCSMLPYPSG-KLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGM 87 (893)
Q Consensus 36 ~~~~i~~~~P~~nG-~lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~ 87 (893)
+++.+++++- ||| .|||||... --.+.+++. .|+++++..| |-|++
T Consensus 36 ~~~~vy~G~d-PTg~sLHlGh~v~---l~~l~~lQ~-~G~~~i~lIg-D~ta~ 82 (432)
T 1h3f_A 36 RPLTVKLGAD-PTRPDLHLGHAVV---LRKMRQFQE-LGHKVVLIIG-DFTGM 82 (432)
T ss_dssp SCCEEEEEEC-TTCCSCBHHHHHH---HHHHHHHHH-TTCEEEEEEC-CCC--
T ss_pred CCcEEEEccc-CCCCCCchhhHHH---HHHHHHHHH-CCCCEEEEEc-cceEE
Confidence 4556676654 567 599999762 234555554 5999887776 34443
No 126
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=54.52 E-value=7.9 Score=42.39 Aligned_cols=19 Identities=21% Similarity=0.066 Sum_probs=12.5
Q ss_pred eeecchhhHHHHHHHHHHHH
Q psy2890 540 QYIGGIEHAILHLLYARFWT 559 (893)
Q Consensus 540 ~~igG~D~~i~Hl~y~rf~~ 559 (893)
+.--|.|| ..|+-.+|=+.
T Consensus 211 ~VPVG~DQ-~~hleltRdiA 229 (372)
T 3a04_A 211 VVPVGADQ-DPHLRLTRDLA 229 (372)
T ss_dssp EEEEEGGG-HHHHHHHHHHH
T ss_pred ecccchhh-HHHHHHHHHHH
Confidence 34449999 56877666443
No 127
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=53.49 E-value=20 Score=40.51 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=26.3
Q ss_pred cccccCCCCccCccchhh-hhCchhHHHHHHhcC
Q psy2890 634 EKMSKSKNNGIDPQTQIN-TYGADSTRLFIIFSA 666 (893)
Q Consensus 634 ~KMSKSkgN~i~p~~ii~-~yGaD~lRl~ll~~~ 666 (893)
.||||+.|. ++..++.+ .|.++++|=|++..+
T Consensus 263 ~KLSKR~g~-~sl~~~r~~G~~peal~n~l~~lG 295 (490)
T 4g6z_A 263 EKMSKRHGA-MSVMGYRDAGYLPEAVLNYLARLG 295 (490)
T ss_dssp SBCCTTTTC-CBHHHHHHTTCCHHHHHHHHHTSS
T ss_pred CcccCCCCC-cCHHHHHHCCCCHHHHHHHHHHhC
Confidence 799999986 56666665 589999999999865
No 128
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=53.36 E-value=15 Score=36.11 Aligned_cols=54 Identities=4% Similarity=-0.301 Sum_probs=35.6
Q ss_pred ChhhHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCccc
Q psy2890 132 SPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAII 186 (893)
Q Consensus 132 ~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v 186 (893)
...|.+....+..+|-......+.....|-|+.|+-.....+.-+ .||.||++-
T Consensus 128 E~ehe~~~~~~l~~l~~~~~~~~~~~~~~~C~~CG~~~~g~~~p~-~CP~C~~~k 181 (191)
T 1lko_A 128 EEFHEKRFLDFARNIKEGRVFLREQATKWRCRNCGYVHEGTGAPE-LCPACAHPK 181 (191)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSEEEEEEEEEETTTCCEEEEEECCS-BCTTTCCBG
T ss_pred HHHHHHHHHHHHHhhhcccccccCCCceEEECCCCCEeeCCCCCC-CCCCCcCCH
Confidence 456667777776666554334445566888999997754333322 899999863
No 129
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=52.96 E-value=7.4 Score=42.35 Aligned_cols=75 Identities=19% Similarity=0.272 Sum_probs=41.1
Q ss_pred cEEEEecCCCCCCc-CcchHHHhHHHHHHHHHHHHHcCCccccccccccccHHHHH---HHHHcCCCHHHHHHHHHHHHH
Q psy2890 37 KFYTCSMLPYPSGK-LHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAEN---AAILNNTSPAKWTYDNVSYMK 112 (893)
Q Consensus 37 ~~~i~~~~P~~nG~-lHiGH~~~~~~~Di~~R~~r~~G~~V~~~~G~D~~G~pie~---~a~~~g~~~~~~~~~~~~~~~ 112 (893)
++.|+++.- |||. |||||+. -+. .+.++++ .|+++++..| |-|++-.-. ......+++.+ ..++...+.
T Consensus 46 ~~~vy~G~~-PTg~sLHLGhl~-~l~--~~~~lQ~-~G~~~~~lIa-D~hal~~dp~g~~~~R~~l~~e~-i~~n~~~~~ 118 (356)
T 2pid_A 46 PQTIYCGFD-PTADSLHVGHLL-ALL--GLFHLQR-AGHNVIALVG-GATARLGDPSGRTKEREALETER-VRANARALR 118 (356)
T ss_dssp CCEEEEEEC-CSSSSCBHHHHH-HHH--HHHHHHH-TTCEEEEEEC-TTGGGTCCCTTCSSCCCCCCHHH-HHHHHHHHH
T ss_pred CCEEEEeec-CCCCcccHHHHH-HHH--HHHHHHH-CCCcEEEEEc-cceeeecCCcccccccccCCHHH-HHHHHHHHH
Confidence 356666654 5686 9999943 333 3555554 5999887776 344431000 00001123444 344667777
Q ss_pred HHHHHc
Q psy2890 113 KQLSSL 118 (893)
Q Consensus 113 ~~l~~l 118 (893)
.++.++
T Consensus 119 ~~~~a~ 124 (356)
T 2pid_A 119 LGLEAL 124 (356)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777776
No 130
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=49.74 E-value=9.6 Score=42.50 Aligned_cols=72 Identities=11% Similarity=0.045 Sum_probs=47.2
Q ss_pred CceeeecchhhHHHHHHHHHHHHHHHHHhcCccCCCccceeeecceEeceeeeecccCCCCccccCCCcccccccCCCCc
Q psy2890 537 PVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKP 616 (893)
Q Consensus 537 PvD~~igG~D~~i~Hl~y~rf~~~~l~~~g~~~~~~Pfk~l~~~G~v~~~~~~~~d~~~G~~~~~~~~~v~~~~~~~g~~ 616 (893)
.+|+.+||.|| ..|+..+|=+..-+ + ..+|| .+++.++.+ .+|
T Consensus 187 ~~~i~~gG~DQ-~~ni~lgrdlarr~---~---~~~~~--~l~~plL~~--------ldG-------------------- 229 (432)
T 2jan_A 187 GCTLQIGGADQ-WGNIIAGVRLVRQK---L---GATVH--ALTVPLVTA--------ADG-------------------- 229 (432)
T ss_dssp CCCEEEECSTT-HHHHHHHHHHHHHH---H---CCCCE--EEECCCCBC--------TTS--------------------
T ss_pred CCcEEeccHHH-HHHHHHHHHHHHHh---C---CCCcc--ccccccccC--------CCc--------------------
Confidence 78999999999 55766555443322 1 22333 445556552 444
Q ss_pred cceeeecCCCcceeccccccccCCCC-ccCccchhhhhCchhHHHHHHh
Q psy2890 617 IHAILKLDKKPVIIGGIEKMSKSKNN-GIDPQTQINTYGADSTRLFIIF 664 (893)
Q Consensus 617 ~~~~~~~~g~~~~~~~~~KMSKSkgN-~i~p~~ii~~yGaD~lRl~ll~ 664 (893)
+|||||.|| .|..++ ++..++.++=+++.
T Consensus 230 -----------------~KMSKS~~nsaI~L~d--~~tsp~~i~qki~~ 259 (432)
T 2jan_A 230 -----------------TKFGKSTGGGSLWLDP--QMTSPYAWYQYFVN 259 (432)
T ss_dssp -----------------CBTTBCSSSCBCBSST--TTSCHHHHHHHHHT
T ss_pred -----------------CcCCCCCCCCeEEccC--CCCCHHHHHHHHhc
Confidence 799999999 887775 35567777777774
No 131
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=43.39 E-value=25 Score=31.55 Aligned_cols=56 Identities=7% Similarity=-0.166 Sum_probs=35.3
Q ss_pred CChhhHHHHHHHHHHHHhcCc-ce-------eeceeeeecCCCCcccccchhccCcccCCCcccE
Q psy2890 131 CSPKYYKWNQWIFLKMFKRGI-IY-------KKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIE 187 (893)
Q Consensus 131 ~~~~~~~~v~~~f~~L~~~Gl-iy-------~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~ 187 (893)
.+--+.+..+..|..+ .+|- +. +.....+||..|+....-.+...+.||.||.+-.
T Consensus 38 ls~v~~e~l~f~f~~~-~~gt~~~e~a~L~i~~~p~~~~C~~CG~~~e~~~~~~~~CP~Cgs~~~ 101 (119)
T 2kdx_A 38 RSAMDKSLFVSAFETF-REESLVCKDAILDIVDEKVELECKDCSHVFKPNALDYGVCEKCHSKNV 101 (119)
T ss_dssp TSCCCHHHHHHHHHHH-GGGCTTTSSCCEEEEEECCEEECSSSSCEECSCCSTTCCCSSSSSCCC
T ss_pred hccccHHHHHHHHHHH-HhCChhhcCcEEEEEeccceEEcCCCCCEEeCCCCCCCcCccccCCCc
Confidence 3334445555666655 4454 44 4556789999999875543433338999998743
No 132
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=33.70 E-value=41 Score=31.10 Aligned_cols=83 Identities=7% Similarity=-0.179 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHcCCc-cc-ccCccccCChhhHHHHHHHHHHHHhcCccee-------eceeeeecCCCCcccccch-
Q psy2890 104 TYDNVSYMKKQLSSLGLA-ID-WSREIITCSPKYYKWNQWIFLKMFKRGIIYK-------KTGIVNWDPIEKTVLANEQ- 173 (893)
Q Consensus 104 ~~~~~~~~~~~l~~lgi~-~D-w~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~-------~~~~v~~~~~~~t~l~~~e- 173 (893)
+....+.+.+..+.-|.. +. =...+-..+--..+..+..|..+ .+|-+.. ....++||..|+....-.+
T Consensus 7 a~~iv~~v~~~A~~~g~~~V~~V~l~IG~ls~v~~e~l~faf~~~-~~gt~~e~A~L~i~~~p~~~~C~~CG~~~~~~~~ 85 (139)
T 3a43_A 7 ADAIVRTVLDYAQREGASRVKAVRVVLGELQDVAEDIVKFAMEQL-FAGTIAEGAEIEFVEEEAVFKCRNCNYEWKLKEV 85 (139)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEEEEETTCCCCHHHHHHHHHHH-HTTSTTTTCEEEEEEECCEEEETTTCCEEEGGGC
T ss_pred HHHHHHHHHHHHHHcCCCeehhHHhhHHHHhhhhHHHHHHHHHHH-HcCCcccCCEEEEEecCCcEECCCCCCEEecccc
Confidence 444445555555555541 11 00112223333444555566555 5555555 4567899999997765544
Q ss_pred ----------hc---------cCcccCCCcccE
Q psy2890 174 ----------VI---------NGRGWRSDAIIE 187 (893)
Q Consensus 174 ----------v~---------~g~c~~~~~~v~ 187 (893)
.. ...||.||..-.
T Consensus 86 ~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~ 118 (139)
T 3a43_A 86 KDKFDERIKEDIHFIPEVVHAFLACPKCGSHDF 118 (139)
T ss_dssp TTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCE
T ss_pred cccccccccccccccccccccCCcCccccCCcc
Confidence 21 468999998743
No 133
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=25.17 E-value=63 Score=30.94 Aligned_cols=51 Identities=12% Similarity=-0.145 Sum_probs=33.4
Q ss_pred ChhhHHHHHHHHHHHHhcCcceeeceeeeecCCCCcccccchhccCcccCCCccc
Q psy2890 132 SPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAII 186 (893)
Q Consensus 132 ~~~~~~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v 186 (893)
+..|.++...+...| ++|-.+. ....|-|+.|+-.... +. -..||.||.+-
T Consensus 113 E~~H~~~~~~~l~~l-~~~~~~~-~~~~~~C~~CG~i~~~-~~-p~~CP~Cg~~~ 163 (170)
T 3pwf_A 113 EKIHAELYRKAKEKA-EKGEDIE-IKKVYICPICGYTAVD-EA-PEYCPVCGAPK 163 (170)
T ss_dssp HHHHHHHHHHHHHHH-TTTCCCC-CSCEEECTTTCCEEES-CC-CSBCTTTCCBG
T ss_pred HHHHHHHHHHHHHHH-hcCCcCC-CCCeeEeCCCCCeeCC-CC-CCCCCCCCCCH
Confidence 446666666655544 6777774 3456779999976543 32 23999999764
No 134
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=25.09 E-value=27 Score=30.00 Aligned_cols=45 Identities=13% Similarity=0.116 Sum_probs=24.7
Q ss_pred HhcCcceeeceeeeecCCCCccccc-----------chh-ccCcccCCCcccEEEee
Q psy2890 147 FKRGIIYKKTGIVNWDPIEKTVLAN-----------EQV-INGRGWRSDAIIEKKKI 191 (893)
Q Consensus 147 ~~~Gliy~~~~~v~~~~~~~t~l~~-----------~ev-~~g~c~~~~~~v~~~~~ 191 (893)
...|++-++....+.||.|++.|.- .++ ..+.||.|+.++|.-+-
T Consensus 20 ~~~~~~~~~~~M~~~CP~Cq~eL~~~g~~~hC~~C~~~f~~~a~CPdC~q~LevLkA 76 (101)
T 2jne_A 20 HSSGLVPRGSHMELHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQVLKA 76 (101)
T ss_dssp -----------CCCBCSSSCSBEEEETTEEEETTTCCEEEEEEECTTTCSBCEEEEE
T ss_pred cccccccCcccccccCccCCCcceecCCEEECccccchhhccccCcchhhHHHHHHH
Confidence 4578888888677899999998743 122 24678999999886554
No 135
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=24.01 E-value=35 Score=32.41 Aligned_cols=37 Identities=8% Similarity=-0.258 Sum_probs=25.4
Q ss_pred ceeeceeeeecCCCCcccccchhccCcccCCCcccEEE
Q psy2890 152 IYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKK 189 (893)
Q Consensus 152 iy~~~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~ 189 (893)
|-+.....+.|..|+...... -....||.||+++..+
T Consensus 125 i~~~~~~~y~C~~Cg~~~~~~-~~~~~Cp~CG~~~~~~ 161 (165)
T 2lcq_A 125 IKKVIKWRYVCIGCGRKFSTL-PPGGVCPDCGSKVKLI 161 (165)
T ss_dssp CSSCCCCCEEESSSCCEESSC-CGGGBCTTTCCBEEEC
T ss_pred ccccccEEEECCCCCCcccCC-CCCCcCCCCCCcceeC
Confidence 444455679999999876532 1124899999997544
No 136
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=23.53 E-value=1.1e+02 Score=25.93 Aligned_cols=47 Identities=19% Similarity=0.416 Sum_probs=27.2
Q ss_pred cCCccCeEEcCCCCeeecCCCCCCccCCCccCCCCcccccc-cccccccCCCCc
Q psy2890 443 WGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKENK-KFLHVSCPKCNK 495 (893)
Q Consensus 443 WG~pIPi~~~~~~~~v~v~~~~lpv~lp~~~~~g~~l~~~~-~~~~~~c~~~g~ 495 (893)
++...-.|.|..||.+..++.--|. ..+..|.+..+.+ +| .||.||.
T Consensus 29 ~~~~m~~y~C~vCGyvYD~~~Gdp~---~gI~pGT~fedlPddW---~CPvCga 76 (87)
T 1s24_A 29 GGKAYLKWICITCGHIYDEALGDEA---EGFTPGTRFEDIPDDW---CCPDCGA 76 (87)
T ss_dssp ---CCCEEEETTTTEEEETTSCCTT---TTCCSCCCGGGCCTTC---CCSSSCC
T ss_pred cccCCceEECCCCCeEecCCcCCcc---cCcCCCCChhHCCCCC---CCCCCCC
Confidence 5556678999999998765432211 1122356655554 34 7999985
No 137
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=21.81 E-value=29 Score=20.20 Aligned_cols=9 Identities=67% Similarity=1.770 Sum_probs=7.5
Q ss_pred CccCeEEcC
Q psy2890 445 TPIPIIYCD 453 (893)
Q Consensus 445 ~pIPi~~~~ 453 (893)
-|+|++||.
T Consensus 4 kpvpiiycn 12 (21)
T 8tfv_A 4 KPVPIIYCN 12 (26)
T ss_dssp CCCCCEEEE
T ss_pred CcccEEEEc
Confidence 489999985
No 138
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=20.55 E-value=40 Score=27.69 Aligned_cols=50 Identities=18% Similarity=0.248 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHcCCcccccccccc------ccHHHHHHHHHcCCCHHHHHHHHHHH
Q psy2890 59 YTINDVMYRYMRMNGYNVLMPMGWDA------FGMPAENAAILNNTSPAKWTYDNVSY 110 (893)
Q Consensus 59 ~~~~Di~~R~~r~~G~~V~~~~G~D~------~G~pie~~a~~~g~~~~~~~~~~~~~ 110 (893)
.+++|++.+|-+.. .|+...|.|| .+.+++.+|...|+++.++..+..+.
T Consensus 7 ~tI~eIv~~~P~~~--~vf~~~G~~C~gC~~a~~~tLeeA~~~hgiD~d~ll~eLn~~ 62 (76)
T 2k53_A 7 MIIADVLQMDRGTA--PIFINNGMHCLGCPSSMGESIEDACAVHGIDADKLVKELNEY 62 (76)
T ss_dssp SBHHHHHHHCGGGH--HHHHHTTCCCCSSCCCCCSBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHCHHHH--HHHHHcCCCCCCCCccccccHHHHHHHcCCCHHHHHHHHHHH
Confidence 45777777764332 3666667676 23668899999999998876654443
No 139
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=20.55 E-value=38 Score=27.59 Aligned_cols=49 Identities=14% Similarity=0.076 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHcCCcccccccccccc------HHHHHHHHHcCCCHHHHHHHHHH
Q psy2890 59 YTINDVMYRYMRMNGYNVLMPMGWDAFG------MPAENAAILNNTSPAKWTYDNVS 109 (893)
Q Consensus 59 ~~~~Di~~R~~r~~G~~V~~~~G~D~~G------~pie~~a~~~g~~~~~~~~~~~~ 109 (893)
.+++|++.+|-+.. +|+.-.|+||+| ..++.+|...|+++.++..+..+
T Consensus 9 ~tI~eiv~~~P~~~--~vf~~~G~~c~~C~~a~~~tL~~Aa~~~gid~~~ll~~Ln~ 63 (73)
T 2k5e_A 9 MTFAQALQTHPGVA--GVLRSYNLGCIGCMGAQNESLEQGANAHGLNVEDILRDLNA 63 (73)
T ss_dssp SBHHHHHHHCTHHH--HHHHHTTGGGGGTTTGGGSBHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHCHHHH--HHHHHcCCCCCCCCccccccHHHHHHHcCCCHHHHHHHHHH
Confidence 45667776664442 356666666443 45778899999999887665443
No 140
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=20.01 E-value=43 Score=27.11 Aligned_cols=36 Identities=11% Similarity=-0.177 Sum_probs=24.9
Q ss_pred ceeeeecCCCCcccccchhccCcccCCCcccEEEee
Q psy2890 156 TGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKI 191 (893)
Q Consensus 156 ~~~v~~~~~~~t~l~~~ev~~g~c~~~~~~v~~~~~ 191 (893)
....|-|+.|+....-..-..-+|+.||..|-+++-
T Consensus 25 ~~v~Y~C~~CG~~~e~~~~d~irCp~CG~RILyK~R 60 (70)
T 1twf_L 25 ATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKAR 60 (70)
T ss_dssp CCCCEECSSSCCEECCCTTSTTCCSSSCCCCCBCCC
T ss_pred ceEEEECCCCCCcceeCCCCCccCCCCCceEeEecC
Confidence 456677999998844332233489999997766653
Done!