RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2890
(893 letters)
>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated.
Length = 805
Score = 1147 bits (2971), Expect = 0.0
Identities = 400/900 (44%), Positives = 553/900 (61%), Gaps = 103/900 (11%)
Query: 1 MQKKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYT 60
M ++YN EIEK Q YW + ++TTE+ ++ K+Y M PYPSG LHMGHVRNYT
Sbjct: 1 MMERYNPKEIEKKWQKYWEENKTFKTTEDSSK----KYYVLDMFPYPSGGLHMGHVRNYT 56
Query: 61 INDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGL 120
I DV+ RY RM GYNVL PMGWDAFG+PAENAAI T PA+WTY+N++ MKKQL SLG
Sbjct: 57 IGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLKSLGF 116
Query: 121 AIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGW 180
+ DWSREI TC P+YYKW QWIFLK++++G+ Y+K VNW P++ TVLANEQVI+GR W
Sbjct: 117 SYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVIDGRCW 176
Query: 181 RSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIGKSKGIFLAFPH 240
R A +EKK++ ++ KIT+YA+ELL+ + KL WP+KV+ MQ NWIG+S+G + F
Sbjct: 177 RCGAPVEKKELRQWFLKITDYADELLDDL-DKLEDWPEKVKTMQRNWIGRSEGAEVTFKV 235
Query: 241 NIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYK 300
D K+ +FTTR D ++G T+ V++PEHPL A N + FI E K
Sbjct: 236 EDSD----------EKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAEQNPAVAAFIEECK 285
Query: 301 KNNNIE--SNNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAAI-GVPAHNKHD 357
K +++E + K + T L +HPLT ++I V++ +YV+ YG A+ VPAH++ D
Sbjct: 286 KKSDLERQTETKEKTGVFTGLYAIHPLTGEKIPVWIADYVLM-DYGTGAVMAVPAHDQRD 344
Query: 358 FYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAISTD 417
F FAKK+ L IK VI + + I ++ Y INS + + + +EA AI
Sbjct: 345 FEFAKKYGLPIKPVI--EPGDGDEDISEEAYTGDG--VLINSGELDGLDSEEAKEAIIAW 400
Query: 418 LIKLGLGNKKNIFRLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPN- 476
L + GLG +K +RLRDW ISRQRYWG PIPII+C+ CG VPVPE+DLPV+LPE VP+
Sbjct: 401 LEEKGLGKRKVNYRLRDWGISRQRYWGEPIPIIHCEDCGIVPVPEEDLPVVLPEDVVPDG 460
Query: 477 --NLLKENKKFLHVSCPKCNKLAFRETDTMDTFVDSSWYYMRYISPKLENFMIDDNKINY 534
+ L ++ ++++V+CPKC K A RETDTMDTFV SSWYY+RY P + D NY
Sbjct: 461 TGSPLAKHPEWVNVTCPKCGKPARRETDTMDTFVGSSWYYLRYTDPHNDEAPFDKEAANY 520
Query: 535 WMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENS 594
W+PVDQYIGGIEHA+LHLLYARF+TK++ +LGL+ +EPF +LLTQGM+
Sbjct: 521 WLPVDQYIGGIEHAVLHLLYARFFTKVLRDLGLVSSDEPFKKLLTQGMV----------- 569
Query: 595 SNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYG 654
KMSKSK N +DP I YG
Sbjct: 570 ----------------------------------------KMSKSKGNVVDPDDIIEKYG 589
Query: 655 ADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHNDFS 714
AD+ RLF +F+ PPEK+LEWSD G+EGAYRFL RVW +
Sbjct: 590 ADTARLFEMFAGPPEKDLEWSDSGVEGAYRFLQRVWRLVVDAKGEAGAL----------- 638
Query: 715 VIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIFNILERINSETKFDNNKNT 774
+ + K RRK+HK ++++ DI+R+++NT ++ M++ N L + ++
Sbjct: 639 DVAALSEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVNALYKA---------EDE 689
Query: 775 NNDILLYEGMSIFLRVLNPIAPHITHILWKELKYSIQQGDILNACWPKIDSLALEEEKEE 834
+ +L E + I +R+L P APH+ LW++L + +G I NA WP D AL E +E
Sbjct: 690 QDKAVLREALEILVRLLAPFAPHLAEELWEKLGH---EGSIANAPWPTADEAALVE--DE 744
Query: 835 VKLIIQINGKFRGHIFVKKKCTTDFIKKIVLKNKVIQKYIIH-PPKKFFIIPNKLVNIII 893
V +++Q+NGK RG I V + + I+ + L ++ +QK++ KK ++P KLVNI++
Sbjct: 745 VTIVVQVNGKVRGKIEVPADASKEEIEALALADEKVQKFLEGKTIKKVIVVPGKLVNIVV 804
>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and
mitochondrial family. The leucyl-tRNA synthetases
belong to two families so broadly different that they
are represented by separate models. This model includes
both eubacterial and mitochondrial leucyl-tRNA
synthetases. It generates higher scores for some
valyl-tRNA synthetases than for any archaeal or
eukaryotic cytosolic leucyl-tRNA synthetase. Note that
the enzyme from Aquifex aeolicus is split into alpha and
beta chains; neither chain is long enough to score above
the trusted cutoff, but the alpha chain scores well
above the noise cutoff. The beta chain must be found by
a model and search designed for partial length matches
[Protein synthesis, tRNA aminoacylation].
Length = 842
Score = 903 bits (2336), Expect = 0.0
Identities = 392/899 (43%), Positives = 541/899 (60%), Gaps = 68/899 (7%)
Query: 5 YNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDV 64
YN +EIE+ Q W++ ++ T++ ++ K+Y SM PYPSG LHMGHVRNYTI DV
Sbjct: 1 YNHIEIEEKWQQKWDENKTFKVTDDSSK---PKYYILSMFPYPSGALHMGHVRNYTITDV 57
Query: 65 MYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGLAIDW 124
+ RY RM GYNVL P+GWDAFG+PAENAAI PAKWTY+N++ MKKQL +LG + DW
Sbjct: 58 LSRYYRMKGYNVLHPIGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQALGFSYDW 117
Query: 125 SREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVI-NGRGWRSD 183
REI TC P+YYKW QWIFL++F++G+ Y K VNW P + TVLANEQV +GR WR D
Sbjct: 118 DREIATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGD 177
Query: 184 AIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIGKSKGIFLAFPHNIK 243
+EKK++ ++ KIT YAEELL + ++L +WP+ V+ MQ NWIGKS+G+ + F I
Sbjct: 178 TPVEKKELKQWFLKITAYAEELLNDL-EELDHWPESVKEMQRNWIGKSEGVEITFK--IA 234
Query: 244 DPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYKKNN 303
D ++ K+ +FTTR D I+G+T+ ++PEHPL AA NN + FI +
Sbjct: 235 DHDE--------KITVFTTRPDTIFGVTYLALAPEHPLVEKAAENNPKVAAFIKKILNKT 286
Query: 304 NIE--SNNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAAI-GVPAHNKHDFYF 360
E KK + T +K +HPLT ++I ++V NYV+ YG A+ GVPAH++ DF F
Sbjct: 287 VAERTKATKEKKGVDTGIKAIHPLTGEKIPIWVANYVLM-EYGTGAVMGVPAHDERDFEF 345
Query: 361 AKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIK 420
A+K+ L IK VI+ K D Y + +NS ++N ++ EA NAI L K
Sbjct: 346 AQKYGLPIKPVIDPAEK---DLSLTAAYTEDG--VLVNSGEFNGLNSSEARNAIIDMLEK 400
Query: 421 LGLGNKKNIFRLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCV----PN 476
G G +K +RLRDW SRQRYWG PIPII+C+ G VPVPE+DLPVILPE V
Sbjct: 401 EGKGKRKVNYRLRDWGFSRQRYWGEPIPIIHCEDGGVVPVPEEDLPVILPEDVVYDGDGG 460
Query: 477 NLLKENKKFLHVSCPKCNKLAFRETDTMDTFVDSSWYYMRYISPKLENFMIDDNKINYWM 536
+ L ++++V+CP C K A RETDTMDTF SSWYY+RY+ PK + D K YW+
Sbjct: 461 SPLSRIPEWVNVTCPSCGKPALRETDTMDTFAGSSWYYLRYLDPKNTDGPFDKEKAEYWL 520
Query: 537 PVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSN 596
PVD YIGGIEHAILHLLYARF+ K + ++G + EPF +L+ QGM+L +
Sbjct: 521 PVDLYIGGIEHAILHLLYARFFHKFLRDIGYVNTKEPFKKLINQGMVLGFY----YPPNG 576
Query: 597 KKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGAD 656
K + K ++ G EKMSKSK NGIDPQ + +YGAD
Sbjct: 577 KVPADVLTERDEKGKDK----------AGGELVYVGYEKMSKSKGNGIDPQEIVESYGAD 626
Query: 657 STRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHNDFSVI 716
+ RLFI+F P +LEW++ G+EGA RFL+RVWN Y + + +V
Sbjct: 627 ALRLFIMFMGPIAASLEWNESGLEGARRFLDRVWNLVYEITGELDAAS--------LTVT 678
Query: 717 KFNNNQKVFRRKIHKILQQINRDI-KRIQYNTVVSGCMKIFNILERINSETKFDNNKNTN 775
QK RR +HK L+++ D+ KR +NT +S M++ N L +
Sbjct: 679 ALEEAQKELRRDVHKFLKKVTEDLEKRESFNTAISAMMELLNKLYK------------AK 726
Query: 776 NDILLYEGMSIFLRVLNPIAPHITHILWKELKYSIQQGDILNACWPKIDSLALEEEKEEV 835
+ L+ E + F+ VL+P APH+ LW++L + I NA WP +D AL E+K
Sbjct: 727 KEALMLEYLKGFVTVLSPFAPHLAEELWEKLGS--EPFIIDNAKWPVVDETALVEDK--T 782
Query: 836 KLIIQINGKFRGHIFVKKKCTTDFIKKIVLKNKVIQKYIIHPP-KKFFIIPNKLVNIII 893
+++Q+NGKFR I V K + ++++ ++ ++KY+ + KK +P KLVN +I
Sbjct: 783 LIVVQVNGKFRAKITVPKDADEEQVEELAKQDPEVKKYLENKTIKKVIYVPGKLVNFVI 841
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 814
Score = 860 bits (2223), Expect = 0.0
Identities = 365/904 (40%), Positives = 517/904 (57%), Gaps = 101/904 (11%)
Query: 1 MQKKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYT 60
M +YN EIE+ Q W + ++ E+ + KFY M PYPSG LH+GHVRNYT
Sbjct: 1 MMSRYNPREIEEKWQKRWEEAKVFEADEDSDKPE--KFYVLVMFPYPSGALHVGHVRNYT 58
Query: 61 INDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGL 120
I DV+ RY RM GYNVL PMGWDAFG+PAENAAI T PAKWTY N++YMKKQL SLG
Sbjct: 59 IGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQLKSLGF 118
Query: 121 AIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGW 180
+IDW RE TC P+YYKW QW FLK++++G+ Y+K VNW P++ TVLANEQVI+G W
Sbjct: 119 SIDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCW 178
Query: 181 RSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIGKSKGIFLAFPH 240
R +E K++ ++ KIT+YA+ELL+ + K WP+ V+ MQ NWIG S+G +AF
Sbjct: 179 RCGEPVEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQRNWIGPSEGYEVAFVV 238
Query: 241 NIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNL--LLQKFILE 298
+ ++ + + +FTTR D ++G+T+ V++PEHPL N L+ +F+ E
Sbjct: 239 DGEEEIVSIE--------VFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDE 290
Query: 299 YKKNNNIES--NNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAAI-GVPAHNK 355
K +ES + K + ++P+ ++I V++ NYV+ YG A+ GVPAH++
Sbjct: 291 CKGTGVVESVPAHAEKDGVFLGGYAINPVNGEKIPVWIANYVLM-EYGTGAVMGVPAHDE 349
Query: 356 HDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAIS 415
D FA K+ L IK+VI + K + + INS + + ++EA I
Sbjct: 350 RDLEFATKYKLPIKKVIMPEG----TVGKKVYEGEGV---LINSGGLDGLDYEEAKVKIR 402
Query: 416 TDLIKLGLGNKKNIFRLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCV- 474
L+K GLG +RLRDW SRQRYWG PIPII+C+ CG VPVPE LPV LPE
Sbjct: 403 CGLVKRGLGQWFVNYRLRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRG 462
Query: 475 --PNNLLKENKKFLHVSCPKCNKLAFRETDTMDTFVDSSWYYMRYISPK-LENFMIDDNK 531
+ L +++++ S P A+RETDTMDTF+DSSWYY+R+ P L D +
Sbjct: 463 LGTGSPLPWDEEWVIESLPDST--AYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREE 520
Query: 532 INYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRI 591
NYW PVD YIGGIEHA+LHLLY RF+ K +++ GL+ +EPF +L+TQGM+L +
Sbjct: 521 FNYWYPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEE---- 576
Query: 592 ENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQIN 651
EKMSKSK N +DP+ +
Sbjct: 577 -----------------------------------------GEKMSKSKGNVVDPEEAVE 595
Query: 652 TYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHN 711
YGAD+ RL+I+F+APPE++LEWS+ G+EGA RFL RVWN +++ +
Sbjct: 596 KYGADTVRLYIMFAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHLEKLVEELT------ 649
Query: 712 DFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQY-NTVVSGCMKIFNILERINSETKFDN 770
K R +H+ ++++ D + Q NT ++ M++ N L + T+ D
Sbjct: 650 -------KEQGKEDRWLLHRTIKKVTEDFEARQTFNTAIAALMELLNALRKYLRRTEGDR 702
Query: 771 NKNTNNDILLYEGMSIFLRVLNPIAPHITHILWKELKYSIQQGDILNACWPKIDSLALEE 830
+L E + ++R+L P APHI LW+EL G + NA WP+ D AL E
Sbjct: 703 -------KVLREALETWVRLLAPFAPHIAEELWEELGNE---GFVSNAPWPEPDEEALVE 752
Query: 831 EKEEVKLIIQINGKFRGHIFVKKKCTTDFIKKIVLKNKVIQKYIIH-PPKKFFIIPNKLV 889
+EV++++Q+NGK R V + +K+I L ++ +QK++ KK +P K V
Sbjct: 753 --DEVEIVVQVNGKVRAREVVAADADEEKVKEIALADEEVQKFLQGKTIKKVIAVPGKPV 810
Query: 890 NIII 893
NI+
Sbjct: 811 NIVE 814
>gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase.
Length = 963
Score = 631 bits (1630), Expect = 0.0
Identities = 338/929 (36%), Positives = 491/929 (52%), Gaps = 88/929 (9%)
Query: 2 QKKYNFVEIEKITQCYWNKINAYQTTEN-DTRFPNGKFYTCSMLPYPSGK-LHMGHVRNY 59
++ Y F EIE Q YW + ++T ++ DT P KFY M PYPSG LH+GH Y
Sbjct: 77 KRAYPFHEIEPKWQRYWEENRTFRTPDDVDTSKP--KFYVLDMFPYPSGAGLHVGHPEGY 134
Query: 60 TINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLG 119
T D++ RY RM GYNVL PMGWDAFG+PAE AI T P T N++ + QL SLG
Sbjct: 135 TATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLKSLG 194
Query: 120 LAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRG 179
+ DW REI T P+YYKW QWIFL++ KRG+ Y+ VNW P TVLANE+V++G
Sbjct: 195 FSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLS 254
Query: 180 WRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIGKSKGIFLAFP 239
R + +K + + KIT YA+ LLE + WP+ ++ MQ NWIG+S+G L F
Sbjct: 255 ERGGHPVIRKPMRQWMLKITAYADRLLEDL--DDLDWPESIKEMQRNWIGRSEGAELDFS 312
Query: 240 HNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEY 299
+ K K+ ++TTR D ++G T+ V++PEHPL ++ ++ + EY
Sbjct: 313 V----LDGEGKERDE-KITVYTTRPDTLFGATYLVVAPEHPL--LSSLTTAEQKEAVEEY 365
Query: 300 K----KNNNIESNNLLKKS--ILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAAI-GVPA 352
+ +++E L K+ + T ++P T + I ++V +YV+ SYG AI VPA
Sbjct: 366 VDAASRKSDLERTELQKEKTGVFTGSYAINPATGEAIPIWVADYVL-GSYGTGAIMAVPA 424
Query: 353 HNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYC-----INS----CKYN 403
H+ DF FA+K L IK V+ K D E Y +NS N
Sbjct: 425 HDTRDFEFAQKFDLPIKWVV----KPADGNED-----DAEKAYTGEGVIVNSSSSGLDIN 475
Query: 404 NMSHKEATNAISTDLIKLGLGNKKNIFRLRDWAISRQRYWGTPIPIIYCDSCG-SVPVPE 462
+S KEA + L + G G KK ++LRDW +RQRYWG PIP+++ + G VPVPE
Sbjct: 476 GLSSKEAAKKVIEWLEETGNGKKKVNYKLRDWLFARQRYWGEPIPVVFLEDSGEPVPVPE 535
Query: 463 KDLPVILPE------TCVPNNLLKENKKFLHVSCPKCNKLAFRETDTMDTFVDSSWYYMR 516
DLP+ LPE T L + +++ P K A RET+TM + S WYY+R
Sbjct: 536 SDLPLTLPELDDFTPTGTGEPPLAKAVSWVNTVDPSSGKPARRETNTMPQWAGSCWYYLR 595
Query: 517 YISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIR 576
++ PK N ++D K YWMPVD Y+GG EHA+LHLLYARFW K++Y++G++ EPF
Sbjct: 596 FMDPKNSNALVDKEKEKYWMPVDLYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFQC 655
Query: 577 LLTQGMILNKTYYRIENSSNKK--------RWYNPDDVKITLDKKNKP-IHAILKLDKKP 627
L+ QGMIL + Y S+ + R KI +K K +LK D
Sbjct: 656 LVNQGMILGEVEYTAFKDSDGEYVSADTADRLGELQQEKIPEEKVIKSGDSFVLKDDPSI 715
Query: 628 VIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLN 687
+I KMSKS+ N ++P ++ YGADS RL+ +F P + WS G+EG +RFL
Sbjct: 716 RLIARAHKMSKSRGNVVNPDDVVSEYGADSLRLYEMFMGPLRDSKTWSTSGVEGVHRFLG 775
Query: 688 RVWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNT 747
R W ++ + D +V+ R +HK + ++ +I+ ++NT
Sbjct: 776 RTWRL-------VVGAPLPDGSFRDGTVVTDEEPSLEQLRLLHKCIAKVTEEIESTRFNT 828
Query: 748 VVSGCMKIFNILERINSETKFDNNKNTNNDILLYEGMSIFLRVLNPIAPHITHILWKELK 807
+S M E N+ K+D E + F+ +L+P APH+ LW L
Sbjct: 829 AISAMM------EFTNAAYKWDKVPR--------EAIEPFVLLLSPYAPHLAEELWFRLG 874
Query: 808 YSIQQGDILNACWPKIDSLALEEEKEEVKLIIQINGKFRGHIFVKKKCTTDFIKKIVLKN 867
+S + WP+ + L ++ V L +QINGK RG I V++ C+ D + ++
Sbjct: 875 HS---NSLAYEPWPEANPSYLVDDT--VVLPVQINGKTRGTIEVEEGCSEDDAFALASQD 929
Query: 868 KVIQKYI----IHPPKKFFIIPNKLVNII 892
+ + KY+ I KK +P K++N+I
Sbjct: 930 EKLSKYLDGKEI---KKRIYVPGKILNVI 955
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA
synthetases. Leucyl tRNA synthetase (LeuRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. In Aquifex
aeolicus, the gene encoding LeuRS is split in two, just
before the KMSKS motif. Consequently, LeuRS is a
heterodimer, which likely superimposes with the LeuRS
monomer found in most other organisms. LeuRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements and thus differs between
prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This
editing region hydrolyzes mischarged cognate tRNAs and
thus prevents the incorporation of chemically similar
amino acids.
Length = 314
Score = 230 bits (589), Expect = 1e-68
Identities = 94/210 (44%), Positives = 123/210 (58%), Gaps = 29/210 (13%)
Query: 37 KFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILN 96
KFY M PYPSG LH+GHVR YTI D++ RY RM GYNVL PMG+DAFG+PAENAAI
Sbjct: 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKI 60
Query: 97 NTSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKT 156
P WT N+ MK+QL +G + DW RE TC P+YYK+ QW+FLK++++G+ YKK
Sbjct: 61 GRDPEDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKE 120
Query: 157 GIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKI--TNYAEELLEYVKKKLP 214
VNW K + ++ K T + E+LL+ ++K L
Sbjct: 121 APVNWC--------------------------KLLDQWFLKYSETEWKEKLLKDLEK-LD 153
Query: 215 YWPKKVRLMQVNWIGKSKGIFLAFPHNIKD 244
WP++VR MQ NWIG S+ + P D
Sbjct: 154 GWPEEVRAMQENWIGCSRQRYWGTPIPWTD 183
Score = 170 bits (433), Expect = 4e-47
Identities = 73/244 (29%), Positives = 94/244 (38%), Gaps = 104/244 (42%)
Query: 437 ISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKENKKFLHVSCPKCNKL 496
SRQRYWGTPIP
Sbjct: 169 CSRQRYWGTPIPW----------------------------------------------- 181
Query: 497 AFRETDTMDTFVDSSWYYMRYISPKLENFMI------DDNKINYWMPVDQYIGGIEHAIL 550
TDTM++ DS+WYY RY D + YW PVD YIGG EHA
Sbjct: 182 ----TDTMESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYWYPVDIYIGGKEHAPN 237
Query: 551 HLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITL 610
HLLY+RF K +++ GL+ +EP L+ QGM+L +
Sbjct: 238 HLLYSRFNHKALFDEGLV-TDEPPKGLIVQGMVLLEG----------------------- 273
Query: 611 DKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEK 670
EKMSKSK N + P I YGAD+ RL+I+F+APP+
Sbjct: 274 -----------------------EKMSKSKGNVVTPDEAIKKYGADAARLYILFAAPPDA 310
Query: 671 NLEW 674
+ +W
Sbjct: 311 DFDW 314
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA synthetase
(ValS) is a class I amino acyl-tRNA ligase and is
particularly closely related to the isoleucyl tRNA
synthetase [Protein synthesis, tRNA aminoacylation].
Length = 861
Score = 227 bits (580), Expect = 1e-62
Identities = 197/933 (21%), Positives = 328/933 (35%), Gaps = 293/933 (31%)
Query: 1 MQKKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLP--YPSGKLHMGHVRN 58
M K Y+ E+EK W K ++ N N + C +P +G LH+GH N
Sbjct: 1 MPKDYDPHEVEKKWYKKWEKSGFFKPDGNS----NKPPF-CIDIPPPNVTGSLHIGHALN 55
Query: 59 YTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENA--AILNNTSPAK-------------- 102
++I D++ RY RM GYNVL G D G+ + L K
Sbjct: 56 WSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWE 115
Query: 103 WTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWD 162
W ++ +K Q+ LG ++DWSRE T K + F++++++G+IY+ +VNWD
Sbjct: 116 WKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYEKGLIYRGEYLVNWD 175
Query: 163 PIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRL 222
P T + SD +E K+ VK KL Y
Sbjct: 176 PKLNTAI------------SDIEVEYKE------------------VKGKLYY------- 198
Query: 223 MQVNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLA 282
I+ P N L + TTR + ++G T + PE
Sbjct: 199 -------------------IRYPLANG---SKDYLVVATTRPETMFGDTAVAVHPEDE-- 234
Query: 283 IFAARNNLLLQKFILEYKKNNNIESNNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKS 342
YK +L+ K KV+ PLT ++I + YV +
Sbjct: 235 ---------------RYK--------HLIGK------KVILPLTGRKIPIIADEYV-DME 264
Query: 343 YGRAAIGV-PAH--------NKHDFYFA-------------------------------- 361
+G A+ V PAH +H+ F
Sbjct: 265 FGTGAVKVTPAHDFNDYEWGKRHNLEFINILDEDGLLNENAGKYQGLTRFEARKKIVEDL 324
Query: 362 KKHSLLIKQVINVKNKSYSDK--------IWKDWYIDKENCYCINSCKYNNMSHKEATNA 413
K+ LL+K + N + + K W++ E K A A
Sbjct: 325 KEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSKQWFVKVE---------------KLADKA 369
Query: 414 ISTDLIKLGLGN------KKNIFR----LRDWAISRQRYWGTPIPIIYCDSCGSVPVPEK 463
+ + + G +K ++DW ISRQ WG IP+ YC CG V V ++
Sbjct: 370 L--EAAEEGEIKFVPKRMEKRYLNWLRNIKDWCISRQLIWGHRIPVWYCKECGEVYVAKE 427
Query: 464 DLPVILPETCVPNNLLKENKKFLHVSCPKCNKLAFRETDTMDTFVDSSWYYMRYISPKLE 523
+ P+ L+ ++TD +DT+ SS + P
Sbjct: 428 EPLPDDKTNTGPSVELE------------------QDTDVLDTWFSSS------LWP--- 460
Query: 524 NFMI-----DDNKINYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNE-PFIRL 577
F + + + P D + G + I+ FW M L + PF +
Sbjct: 461 -FSTLGWPDETKDLKKFYPTDLLVTG--YDII-----FFWVARMIFRSLALTGQVPFKEV 512
Query: 578 LTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMS 637
G++ D++ + KMS
Sbjct: 513 YIHGLVR--------------------------DEQGR-------------------KMS 527
Query: 638 KSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFSYILA 697
KS N IDP I YGAD+ R + P ++ + +E A FLN++WN S +
Sbjct: 528 KSLGNVIDPLDVIEKYGADALRFTLASLVTPGDDINFDWKRVESARNFLNKLWNASRFVL 587
Query: 698 PRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIF- 756
+ + + L+ S+ + K+++ ++++ + + + ++ +
Sbjct: 588 MNLSDDLELSGGEEKLSLA-----DRWILSKLNRTIKEVRKALDKYRFAEAAKALYEFIW 642
Query: 757 -----NILERINSETKFDNN--KNTNNDILLYEGMSIFLRVLNPIAPHITHILWKELKYS 809
+E + N K D L Y + LR+L+P P IT +W+ K
Sbjct: 643 NDFCDWYIELVKYRLYNGNEAEKKAARDTLYYV-LDKALRLLHPFMPFITEEIWQHFK-- 699
Query: 810 IQQGDILNACWPKIDSLALEEEKE-EVKLIIQI 841
I+ +P +D+ ++EE E +L+ +I
Sbjct: 700 EGADSIMLQSYPVVDAEFVDEEAEKAFELLKEI 732
>gnl|CDD|222257 pfam13603, tRNA-synt_1_2, Leucyl-tRNA synthetase, Domain 2. This
is a family of the conserved region of Leucine-tRNA
ligase or Leucyl-tRNA synthetase, EC:6.1.1.4.
Length = 178
Score = 163 bits (414), Expect = 3e-46
Identities = 66/169 (39%), Positives = 101/169 (59%), Gaps = 6/169 (3%)
Query: 254 NGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYKKNNNIE--SNNLL 311
+ K+ +FTTR D ++G+TF ++PEHPLA A N L FI E KK + IE
Sbjct: 13 DEKIEVFTTRPDTLFGVTFLALAPEHPLAKKLAEKNPELAAFIEECKKTSTIERTIATAE 72
Query: 312 KKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAAI-GVPAHNKHDFYFAKKHSLLIKQ 370
K+ I T L +HP+T ++I +++ N+V+ YG A+ VPAH++ DF FAKK++L IKQ
Sbjct: 73 KEGIFTGLYAIHPITGEKIPIWIANFVL-MDYGTGAVMAVPAHDQRDFEFAKKYNLPIKQ 131
Query: 371 VINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLI 419
VI ++ D I ++ Y +K INS +++ + +EA AI+ L
Sbjct: 132 VIKPEDGDEDDLIMEEAYTEKG--ILINSGEFDGLDSEEAKEAIAEKLE 178
>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V).
Other tRNA synthetase sub-families are too dissimilar to
be included.
Length = 606
Score = 167 bits (424), Expect = 2e-43
Identities = 156/744 (20%), Positives = 246/744 (33%), Gaps = 229/744 (30%)
Query: 18 WNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVL 77
W++ ++ + F P +G LH+GH N T+ D++ RY RM G++VL
Sbjct: 6 WDEQGYFKK-SLENGKGKPSFTIHDGPPNATGLLHIGHALNKTLKDIVIRYKRMQGFDVL 64
Query: 78 MPMGWDAFGMPAENA-----AILNNTSPAKWTYDN------------VSYMKKQLSSLGL 120
GWD G+P E I K + ++ Q LG+
Sbjct: 65 WVPGWDHHGLPTEQKVEKKLGIKGKKDRHKLGREKFREKCREWKMEYADEIRSQFKRLGV 124
Query: 121 AIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGW 180
+ DW RE T P +F+++ +G+IY+ VNW P T L+ +V
Sbjct: 125 SGDWDREYFTLDPGLEAAVWRVFVRLHDKGLIYRGKKPVNWSPALNTALSEAEV------ 178
Query: 181 RSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIGKSKGIFLAFPH 240
EY K P +AFP
Sbjct: 179 --------------------------EYKDVKGPSI------------------HVAFP- 193
Query: 241 NIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLL-----LQKF 295
+ D K L+ I+TT + G T ++PE L K
Sbjct: 194 -LAD-GKGASLV------IWTTTPWTLPGNTAVAVNPEFNYVKIRVTGEYYILAEALLKS 245
Query: 296 ILEYKKNNNIESNNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAAIGV-PAHN 354
+ + KK + E + L K +HP N+EI + +YV + +G A+ + PAH
Sbjct: 246 LYK-KKKEDGEILEDFRGKELIGKKYIHPFVNREIPIIADDYV-DMEFGTGAVHIAPAHG 303
Query: 355 KHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAI 414
+ D+ K+H+L IN +D + Y + ++ + +A I
Sbjct: 304 EDDYEVGKRHNLE---FINP--------------VDDDGTYNEEAPEFQGLKRFKARKKI 346
Query: 415 STDLIKLGLGNKKN----------------IFR-----------LRDWAI---------- 437
L + GL K I+R L + A+
Sbjct: 347 VELLTEKGLLLKIEPIEHSYPHCWRSGTPIIYRATPQWFVRMKNLAEAALKAVEKVQFVP 406
Query: 438 -------------------SRQRYWGTPIPIIYCDSCGSVPVPEKDLPV---ILPETCVP 475
SRQR+WG PIP Y G V V + E +
Sbjct: 407 KWGEKRYGNWLENIQDWCISRQRWWGHPIPAWYSKDTGEVYVRGSLKELVAGREEEEGIE 466
Query: 476 NNLLKENKKFLHVSCPKCNKLAFRETDTMDTFVDS-SWYY--MRYISPKLENFMIDDNKI 532
L ++ K L K ++ D +DT+ S SW + + Y F
Sbjct: 467 AWLHRDAKDLL----GKGAGTLEQDEDVLDTWFSSGSWPFSTLGYPFTNTPEF------- 515
Query: 533 NYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNE-PFIRLLTQGMILNKTYYRI 591
+ P D + G + R W M LG P+ +L G
Sbjct: 516 KRFFPADMLLEGSDQ-------TRGWFYRMIVLGTALTGSAPYKNVLVHG---------- 558
Query: 592 ENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQIN 651
+ D++ + KMSKS N IDP I+
Sbjct: 559 ----------------LVRDEQGR-------------------KMSKSLGNVIDPLDVID 583
Query: 652 TYGADSTRLFIIFSAPPEKNLEWS 675
YGAD+ RL++ S+ +++ +S
Sbjct: 584 KYGADALRLWLA-SSDYGRDINFS 606
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA
synthetases. Valine amino-acyl tRNA synthetase (ValRS)
catalytic core domain. This enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. ValRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements. This editing region
hydrolyzes mischarged cognate tRNAs and thus prevents
the incorporation of chemically similar amino acids.
Length = 382
Score = 147 bits (372), Expect = 3e-38
Identities = 61/205 (29%), Positives = 105/205 (51%), Gaps = 21/205 (10%)
Query: 45 PYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAEN---------AAIL 95
P +G LHMGH N TI D++ RY RM GYNVL P G D G+ +
Sbjct: 10 PNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTR 69
Query: 96 NNTSPAK-------WTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFK 148
++ + W ++ +++QL LG ++DWSRE T P + Q F+++++
Sbjct: 70 HDLGREEFLEKCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYE 129
Query: 149 RGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEY 208
+G+IY+ +VNW P +T +++ +V RS +IE P ++ K+ + A++ LE
Sbjct: 130 KGLIYRDNRLVNWCPKLRTAISDIEV----CSRSGDVIEPLLKPQWFVKVKDLAKKALEA 185
Query: 209 VKKKLPYW-PKKVRLMQVNWIGKSK 232
VK+ + P+++ NW+ +
Sbjct: 186 VKEGDIKFVPERMEKRYENWLENIR 210
Score = 92.7 bits (231), Expect = 5e-20
Identities = 56/245 (22%), Positives = 81/245 (33%), Gaps = 85/245 (34%)
Query: 432 LRDWAISRQRYWGTPIPIIYCDSCGSVPV-PEKDLPVILPETCVPNNLLKENKKFLHVSC 490
+RDW ISRQ +WG IP YC G V E+D + K +C
Sbjct: 209 IRDWCISRQLWWGHRIPAWYCKDGGHWVVAREEDEAI---------------DKAAPEAC 253
Query: 491 PKCNKLAF-RETDTMDTFVDSSWYYMRYISPKLENFMI-----DDNKINYWMPVDQYIGG 544
C ++ D +DT+ SS + P F + + + P + G
Sbjct: 254 VPCGGEELKQDEDVLDTWFSSS------LWP----FSTLGWPEETKDLKKFYPTSLLVTG 303
Query: 545 IEHAILHLLYARFWTKLMYNLGLIKFNE-PFIRLLTQGMILNKTYYRIENSSNKKRWYNP 603
H I+ FW M GL + PF + G++
Sbjct: 304 --HDII-----FFWVARMIMRGLKLTGKLPFKEVYLHGLV-------------------- 336
Query: 604 DDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFII 663
D+ + KMSKS N IDP I+ YGAD+ R +
Sbjct: 337 ------RDEDGR-------------------KMSKSLGNVIDPLDVIDGYGADALRFTLA 371
Query: 664 FSAPP 668
+A
Sbjct: 372 SAATQ 376
>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed.
Length = 800
Score = 147 bits (373), Expect = 3e-36
Identities = 60/193 (31%), Positives = 89/193 (46%), Gaps = 36/193 (18%)
Query: 1 MQKKYNFVEIEKITQCYW--NKINAYQTTENDTRF-----PNGKFYTCSMLPYPSGKLHM 53
+ KKY+ E+E+ Q W + E + P P SG LH+
Sbjct: 6 LPKKYDPEELEEKWQKIWEEEGTYKFDPDERKPVYSIDTPP----------PTVSGSLHI 55
Query: 54 GHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAE---------NAAILNNTSPAK-- 102
GHV +YT D + RY RM GYNV P GWD G+P E ++ S +
Sbjct: 56 GHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRK---DDISREEFI 112
Query: 103 -----WTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTG 157
T ++ ++ LGL++DWS E T SP+Y + +Q FL ++K+G+IY+
Sbjct: 113 ELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIYRAEA 172
Query: 158 IVNWDPIEKTVLA 170
V W P +T +A
Sbjct: 173 PVLWCPRCETAIA 185
Score = 77.5 bits (192), Expect = 2e-14
Identities = 38/93 (40%), Positives = 45/93 (48%), Gaps = 27/93 (29%)
Query: 434 DWAISRQRYWGTPIPIIYCDSCGSVPVP-EKDLPVI----LPETCVPNNLLKENKKFLHV 488
DW ISRQRY+GTPIP+ YC CG +P E+DLPV P
Sbjct: 397 DWCISRQRYFGTPIPVWYCKDCGHPILPDEEDLPVDPTKDEPPGY--------------- 441
Query: 489 SCPKCNKLAFR-ETDTMDTFVDSSWYYMRYISP 520
CP+C F ETD MDT+ SS I+P
Sbjct: 442 KCPQCGSPGFEGETDVMDTWATSS------ITP 468
Score = 64.8 bits (159), Expect = 2e-10
Identities = 49/235 (20%), Positives = 93/235 (39%), Gaps = 45/235 (19%)
Query: 634 EKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFS 693
+KMSKSK N + P+ + YGAD+ R + SA + + + ++ R L ++
Sbjct: 532 KKMSKSKGNVVTPEELLEKYGADAVRYWAA-SARLGSDTPFDEKQVKIGRRLLTKL---- 586
Query: 694 YILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHK-----ILQQINRDIKRI----- 743
N F V+ F+ + + + ++ + IL ++ + +++
Sbjct: 587 ------------WNASR--F-VLHFSADPEPDKAEVLEPLDRWILAKLAKVVEKATEALE 631
Query: 744 --QYNTVVSGCMKIF------NILERINSETKFDNNKNTNNDIL--LYEGMSIFLRVLNP 793
+ + F + LE + S ++ + LY + LR+L P
Sbjct: 632 NYDFAKALEEIESFFWHVFCDDYLELVKSRAYGEDEEEEQKSARYTLYTVLDTLLRLLAP 691
Query: 794 IAPHITHILWKELKYSIQQGDILNACWPK-IDSLALEEEKEEVKLIIQINGKFRG 847
P IT +W L G + A WP+ + L EE++E +L +I R
Sbjct: 692 FLPFITEEVWSWL----YGGSVHRASWPEPDEELIDEEDEELGELAKEILSAVRK 742
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 141 bits (359), Expect = 2e-34
Identities = 56/194 (28%), Positives = 95/194 (48%), Gaps = 23/194 (11%)
Query: 1 MQKKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLP--YPSGKLHMGHVRN 58
+ K Y+ EIE+ W + ++ N+ + P + P +G LHMGH N
Sbjct: 1 LPKTYDPKEIEEKWYKKWEESGYFKPDPNEDKPP----F-SIDTPPPNVTGSLHMGHALN 55
Query: 59 YTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENA--AILNNTSPAK-------------- 102
YT+ D++ RY RM GYNVL P G D G+ + L +
Sbjct: 56 YTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWE 115
Query: 103 WTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWD 162
W ++ +++QL LG+++DWSRE T P + Q F++++++G+IY+ +VNW
Sbjct: 116 WKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWC 175
Query: 163 PIEKTVLANEQVIN 176
P +T +++ +V
Sbjct: 176 PKCRTAISDIEVEY 189
Score = 133 bits (338), Expect = 5e-32
Identities = 98/432 (22%), Positives = 162/432 (37%), Gaps = 109/432 (25%)
Query: 432 LRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKENKKFLHVSCP 491
+RDW ISRQ +WG IP+ YC CG+V V ++ P E
Sbjct: 396 IRDWCISRQLWWGHRIPVWYCKECGNVVV-AEEEPEDPAAAEKCPKEELE---------- 444
Query: 492 KCNKLAFRETDTMDTFVDSS--------WYYMRYISPKLENFMIDDNKINYWMPVDQYIG 543
++ D +DT+ SS W +P L+ F P D +
Sbjct: 445 -------QDEDVLDTWFSSSLWPFSTLGWPEE---TPDLKKFY----------PTDLLVT 484
Query: 544 GIEHAILHLLYARFWTKLMYNLGLIKFNE-PFIRLLTQGMILNKTYYRIENSSNKKRWYN 602
G H I+ FW M GL E PF + G++
Sbjct: 485 G--HDII-----FFWVARMIMRGLHLTGEVPFKDVYIHGLVR------------------ 519
Query: 603 PDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFI 662
D++ KMSKSK N IDP I+ YGAD+ R +
Sbjct: 520 --------DEQG-------------------RKMSKSKGNVIDPLDVIDKYGADALRFTL 552
Query: 663 IFSAPPEKNLEWSDIGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHN-DFSVIKFNNN 721
A P +++ + + +EG FLN++WN A R + +NL+ D ++ +
Sbjct: 553 ASLASPGRDINFDEKRVEGYRNFLNKLWN-----ATRFVL-MNLDDLGPDDLDLLALSLA 606
Query: 722 QKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIF------NILERINSETKFDNNKNTN 775
+ ++++ ++++ + +++ + LE +
Sbjct: 607 DRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAKPRLYGGEEEKRA 666
Query: 776 NDILLYEGMSIFLRVLNPIAPHITHILWKELKYSIQQGDILNACWPKID-SLALEEEKEE 834
LY + LR+L+P P IT +W++L I A WP++D L EE ++E
Sbjct: 667 ARATLYYVLDTLLRLLHPFMPFITEEIWQKLP---GTESIHLASWPEVDEELIDEEAEKE 723
Query: 835 VKLIIQINGKFR 846
+L+ +I R
Sbjct: 724 FELLKEIISAIR 735
Score = 43.8 bits (104), Expect = 4e-04
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 18/109 (16%)
Query: 320 KVLHPLTNQEIKVFVVNYVIEKSYGRAAIGV-PAHNKHDFYFAKKHSLLIKQVINVKNKS 378
+V+ PL +EI + YV + +G A+ + PAH+ +D+ K+H+L + +I+
Sbjct: 242 EVILPLVGREIPIIADEYV-DPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIID----- 295
Query: 379 YSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNKK 427
+D I++E + ++ + EA I DL + GL K
Sbjct: 296 ------EDGRINEE-----AAGEFAGLDRFEARKKIVEDLEEQGLLVKI 333
>gnl|CDD|153412 cd07958, Anticodon_Ia_Leu_BEm, Anticodon-binding domain of
bacterial and eukaryotic mitochondrial leucyl tRNA
synthetases. This domain is found in leucyl tRNA
synthetases (LeuRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain. In contrast to other class Ia
enzymes, the anticodon is not used as an identity
element in LeuRS (with exceptions such as Saccharomyces
cerevisiae and some other eukaryotes). No
anticodon-binding site can be defined for this family,
which includes bacterial and eukaryotic mitochondrial
members, as well as LeuRS from the archaeal
Halobacteria. LeuRS catalyzes the transfer of leucine to
the 3'-end of its tRNA.
Length = 117
Score = 120 bits (303), Expect = 4e-32
Identities = 44/133 (33%), Positives = 69/133 (51%), Gaps = 16/133 (12%)
Query: 674 WSDIGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKIL 733
WSD G+EGAYRFLNRVW LA + + + K RRK+HK +
Sbjct: 1 WSDSGVEGAYRFLNRVWRLVTELAEALAAPAAAA---------ELSEEDKELRRKLHKTI 51
Query: 734 QQINRDIKRIQYNTVVSGCMKIFNILERINSETKFDNNKNTNNDILLYEGMSIFLRVLNP 793
+++ DI+R+++NT ++ M++ N L + K+ + +L E + + +L P
Sbjct: 52 KKVTEDIERLRFNTAIAALMELVNALYKYK-------KKDAQHAAVLREALETLVLLLAP 104
Query: 794 IAPHITHILWKEL 806
APHI LW+EL
Sbjct: 105 FAPHIAEELWEEL 117
>gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 933
Score = 129 bits (326), Expect = 1e-30
Identities = 94/440 (21%), Positives = 158/440 (35%), Gaps = 128/440 (29%)
Query: 433 RDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLP--VI-LPETCVPNNLLKENKKFLHVS 489
DW ISRQRYWG PIP+ YC G + V ++L V L E ++ + + L
Sbjct: 455 PDWCISRQRYWGVPIPVWYCKETGEILVITEELEELVGQLVEEKGIDDWHRPDIDELLPP 514
Query: 490 CPKCNKLAFRETDTMDTFVDS--SWYYMRYISPKLENFMIDDNKINYWMP-VDQYIGGIE 546
CP+ K R D +D + DS + Y + EN ++++ DQ G
Sbjct: 515 CPEDGKEYRRVPDVLDVWFDSGSTPY---AVLHPRENLKFPALFADFYLEGSDQTRGW-- 569
Query: 547 HAILHLLYARFWTKLMYNLGLIKFNE-PFIRLLTQGMILNKTYYRIENSSNKKRWYNPDD 605
F++ L+ F P+ +LT G
Sbjct: 570 ----------FYSSLL--TSTALFGRAPYKNVLTHG------------------------ 593
Query: 606 VKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFS 665
LD+K + KMSKS N +DPQ I+ YGAD RL++ S
Sbjct: 594 --FVLDEKGR-------------------KMSKSLGNVVDPQDVIDKYGADILRLWVA-S 631
Query: 666 APPEKNLEWSDIGIEGAYRFLNRVWN-FSYILAPRIINIINLNIF--------HNDFSVI 716
+ ++L +SD ++ ++ N + ++L NL+ F + +
Sbjct: 632 SDYWEDLRFSDEILKQVREVYRKIRNTYRFLLG-------NLDDFDPKKDAVLPEELREL 684
Query: 717 ------KFNNNQKVFRR-----KIHKILQQIN------------RDIKRIQYNTVVSGCM 753
+ N+ K R HK+++ + IK Y
Sbjct: 685 DRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLY------TE 738
Query: 754 KIFNILERINSETKFDNNKNTNNDILLYEGMSIFLRVLNPIAPHITHILWKELKYSIQQG 813
+ +R ++T LY + +R+L PI P +W+ L ++
Sbjct: 739 AA-DSPDRRAAQT------------TLYHILKALVRLLAPILPFTAEEIWQNLPGERKEE 785
Query: 814 DILNACWPKIDSLALEEEKE 833
+ WP++D ++ E
Sbjct: 786 SVHLEDWPEVDEELIDVEAA 805
Score = 95.7 bits (239), Expect = 4e-20
Identities = 49/190 (25%), Positives = 78/190 (41%), Gaps = 28/190 (14%)
Query: 4 KYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSML----PYPSGKLHMGHVRNY 59
+ N + E +W + + Y+ + KF L PY +G +H+GH N
Sbjct: 17 RANLPKKEPKILKFWEENDIYEKIREERNKGKPKFV----LHDGPPYANGNIHIGHALNK 72
Query: 60 TINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAI--LNNTSPAKWTY------------ 105
+ D++ RY M GY+V GWD G+P E L ++
Sbjct: 73 ILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREF 132
Query: 106 --DNVSYMKKQLSSLGLAIDWSREIITCSPKY--YKWNQWIFLKMFKRGIIYKKTGIVNW 161
+ V K+Q LG+ DW T P Y W W F +++++G++Y+ V W
Sbjct: 133 ALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVW--WAFKELYEKGLLYRGYKPVPW 190
Query: 162 DPIEKTVLAN 171
P +T LA
Sbjct: 191 SPRCETALAE 200
>gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase. The isoleucyl tRNA
synthetase (IleS) is a class I amino acyl-tRNA ligase
and is particularly closely related to the valyl tRNA
synthetase. This model may recognize IleS from every
species, including eukaryotic cytosolic and
mitochondrial forms [Protein synthesis, tRNA
aminoacylation].
Length = 861
Score = 129 bits (325), Expect = 2e-30
Identities = 89/418 (21%), Positives = 153/418 (36%), Gaps = 77/418 (18%)
Query: 433 RDWAISRQRYWGTPIPIIYCDSCGSVPVPE--KDLPVILPETCVPNNLLKENKKFL---H 487
DW ISRQRYWG PIPI YC+ G V ++L ++ + ++ FL
Sbjct: 461 PDWCISRQRYWGIPIPIWYCEDTGEPIVVGSIEELIELIELKGIDAWFEDLHRDFLDKIT 520
Query: 488 VSCPKCNKLAFRETDTMDTFVDS--SWYYMRYISPKLENFMIDDNKINYWMPVDQYIGGI 545
+ + R D +D + DS Y I EN + P D + G
Sbjct: 521 LKSGDGGEYR-RVPDVLDVWFDSGSMPYAS--IHYPFENEKFKE-----VFPADFILEGS 572
Query: 546 EHAILHLLYARFWTKLMYNLGLIKFNE-PFIRLLTQGMILNKTYYRIENSSNKKRWYNPD 604
+ R W +G F + P+ ++T G
Sbjct: 573 DQT-------RGWFYSSLAIGTALFGQAPYKNVITHG----------------------- 602
Query: 605 DVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIF 664
TLD+K KMSKS N +DP IN YGAD RL++
Sbjct: 603 ---FTLDEKG-------------------RKMSKSLGNVVDPLKVINKYGADILRLYVAS 640
Query: 665 SAPPEKNLEWSDIGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKV 724
S P E +L +SD ++ ++ +Y N+ + N +V KF +
Sbjct: 641 SDPWE-DLRFSDEILKQVVEKYRKIRWNTYRFLLTYANLDKFDPLFNSVAVEKFPEEDRW 699
Query: 725 FRRKIHKILQQINRDIKRIQYNTVVSGCMKIFNI------LERINSETKFDNNKNTNNDI 778
+++ +++++N +++ ++ V+ + I + N
Sbjct: 700 ILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNWYIRIIRDRLYCEAKDNDKRAA 759
Query: 779 L--LYEGMSIFLRVLNPIAPHITHILWKELKYSIQQGDILNACWPKIDSLALEEEKEE 834
LY + +R+L P PH +++ L ++ + WP++D ++E E
Sbjct: 760 QTTLYYALLTLVRLLAPFLPHTAEEIYQNLPGGEEEESVHLNLWPEVDEEFIDEALEA 817
Score = 94.4 bits (235), Expect = 1e-19
Identities = 44/191 (23%), Positives = 77/191 (40%), Gaps = 22/191 (11%)
Query: 3 KKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTIN 62
+ N + E+ +W + + ++ + +F PY +G +H+GH N +
Sbjct: 4 MRGNLSKREEKILAFWQENDIFEKVK-KLNKGKPEFIFHDGPPYANGSIHLGHALNKILK 62
Query: 63 DVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAK-------------------W 103
D++ RY M G+NV GWD G+P E+ K
Sbjct: 63 DIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREFAL 122
Query: 104 TYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDP 163
+ ++Q LG+ DW T P Y + W+F + ++G++Y+ V W P
Sbjct: 123 KQ--IEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEKGLLYRGLKPVYWSP 180
Query: 164 IEKTVLANEQV 174
+T LA +V
Sbjct: 181 RCRTALAEAEV 191
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of
isoleucyl, leucyl, valyl and methioninyl tRNA
synthetases. Catalytic core domain of isoleucyl,
leucyl, valyl and methioninyl tRNA synthetases. These
class I enzymes are all monomers. However, in some
species, MetRS functions as a homodimer, as a result of
an additional C-terminal domain. These enzymes
aminoacylate the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. Enzymes in
this subfamily share an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids. MetRS has a significantly shorter
insertion, which lacks the editing function.
Length = 312
Score = 117 bits (295), Expect = 7e-29
Identities = 56/221 (25%), Positives = 90/221 (40%), Gaps = 47/221 (21%)
Query: 37 KFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAA--I 94
KFY + PY +G LH+GH + I D + RY RM GY V GWD G+P E A
Sbjct: 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERK 60
Query: 95 LN-----------NTSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIF 143
P ++ + K+ LG++ DWS E IT P+Y K + IF
Sbjct: 61 GGRKKKTIWIEEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIF 120
Query: 144 LKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAE 203
+++++G+IY+ T V EQ ++ + + E
Sbjct: 121 SRLYEKGLIYRGT---------HPVRITEQ--------------------WFFDMPKFKE 151
Query: 204 ELLEYVK--KKLPYWPKKVRLMQVNWIGK---SKGIFLAFP 239
+LL+ ++ K +P K + + S+ + P
Sbjct: 152 KLLKALRRGKIVPEHVKNRMEAWLESLLDWAISRQRYWGTP 192
Score = 48.2 bits (115), Expect = 1e-05
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 628 VIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEW 674
V+ G +KMSKSK N IDP + YGAD+ R ++ AP ++
Sbjct: 266 VLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLTSLAPYGDDIRL 312
Score = 38.9 bits (91), Expect = 0.008
Identities = 15/17 (88%), Positives = 16/17 (94%)
Query: 432 LRDWAISRQRYWGTPIP 448
L DWAISRQRYWGTP+P
Sbjct: 178 LLDWAISRQRYWGTPLP 194
>gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M). This family
includes methionyl tRNA synthetases.
Length = 388
Score = 103 bits (259), Expect = 1e-23
Identities = 52/220 (23%), Positives = 92/220 (41%), Gaps = 31/220 (14%)
Query: 38 FYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNN 97
F + LPY +G H+GH+ DV RY+R+ GY+VL G D G E AA
Sbjct: 1 FLITTALPYVNGPPHIGHLYTTIPADVYARYLRLRGYDVLFVTGTDEHGTKIELAAEKEG 60
Query: 98 TSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTG 157
+P + K+ ++ D I T S ++ + Q FLK++++G IY+
Sbjct: 61 VTPQELVDRYHEEFKELFKKFNISFD--DFIRTTSERHKELVQEFFLKLYEKGDIYEGEY 118
Query: 158 IVNWDPIEKTVLANEQV-----------------------------INGRGWRSDAIIEK 188
+ ++ L + V IN R S + E
Sbjct: 119 EGWYCVSDERFLPDRYVEGTCPYCGSEDARGDQCEVCGRPLEPTELINPRSAISGSTPEL 178
Query: 189 KKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWI 228
K+ Y+ +++ + ++LLE++K+ P V + ++W+
Sbjct: 179 KEEEHYFFRLSKFQDKLLEWIKENPDEPPSNVNEVVLSWL 218
Score = 45.7 bits (109), Expect = 7e-05
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 634 EKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEK--NLEWSDI 677
KMSKS+ N +DP ++ YG D+ R ++ AP K + W D
Sbjct: 323 GKMSKSRGNVVDPDELLDRYGVDALRYYLAREAPEGKDGDFSWEDF 368
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 558
Score = 101 bits (255), Expect = 2e-22
Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 32/225 (14%)
Query: 34 PNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAA 93
K + LPYP+G H+GH+ Y DV RY+R+ GY V G D G E A
Sbjct: 3 MMKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKA 62
Query: 94 ILNNTSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIY 153
+P + N K+ +L I + I T SP++ + Q FLK+++ G IY
Sbjct: 63 EKEGITPQELVDKNHEEFKELFKALN--ISFDNFIRTTSPEHKELVQEFFLKLYENGDIY 120
Query: 154 KKTGIVNWDP----------IEKT-------------------VLANEQVINGRGWRSDA 184
+ + +E T L ++IN S A
Sbjct: 121 LREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCENCGRTLDPTELINPVCVISGA 180
Query: 185 IIEKKKIPMYYAKITNYAEELLEYVKKK-LPYWPKKVRLMQVNWI 228
E ++ Y+ +++ + ++LLE+ + WP R +N++
Sbjct: 181 TPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFL 225
Score = 48.4 bits (116), Expect = 1e-05
Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 18/110 (16%)
Query: 586 KTYYRIENSSNKKRWYNPDDVKIT--LDKKNKPIHAI----------LKLDKKPVIIGGI 633
I + + K+++ DD ++ + K HA+ L L + G +
Sbjct: 268 GELAEIGDDEDFKKFWPADDTELVHFIGKDIIRFHAVYWPAMLMAAGLPLPTRIFAHGFL 327
Query: 634 ----EKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEK--NLEWSDI 677
+KMSKS+ N +DP + YG D+ R ++ P + W D
Sbjct: 328 TLEGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSWEDF 377
Score = 34.2 bits (79), Expect = 0.35
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 7/31 (22%)
Query: 425 NKKNIFR------LRDWAISRQR-YWGTPIP 448
N++N L+D +I+R WG P+P
Sbjct: 216 NRRNEVLNFLKEGLKDLSITRTDLDWGIPVP 246
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA
synthetases. Methionine tRNA synthetase (MetRS)
catalytic core domain. This class I enzyme aminoacylates
the 2'-OH of the nucleotide at the 3' of the appropriate
tRNA. MetRS, which consists of the core domain and an
anti-codon binding domain, functions as a monomer.
However, in some species the anti-codon binding domain
is followed by an EMAP domain. In this case, MetRS
functions as a homodimer. The core domain is based on
the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. As a result of a deletion event, MetRS has a
significantly shorter core domain insertion than IleRS,
ValRS, and LeuR. Consequently, the MetRS insertion
lacks the editing function.
Length = 319
Score = 98.4 bits (246), Expect = 3e-22
Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 19/193 (9%)
Query: 37 KFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILN 96
K + LPY +G H+GH+ + DV RY R+ GY+VL G D G E A
Sbjct: 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEE 60
Query: 97 NTSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKT 156
+P + K L ++ D I T SP++ + Q F K+++ G IY+
Sbjct: 61 GVTPQELCDKYHEIFKDLFKWLNISFD--YFIRTTSPRHKEIVQEFFKKLYENGYIYEGE 118
Query: 157 GIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPY- 215
+ + L E ++ Y+ +++ + + LLE+++K +
Sbjct: 119 YEGLYCVSCERFLP----------------EWREEEHYFFRLSKFQDRLLEWLEKNPDFI 162
Query: 216 WPKKVRLMQVNWI 228
WP+ R ++W+
Sbjct: 163 WPENARNEVLSWL 175
Score = 47.9 bits (115), Expect = 1e-05
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 634 EKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEK 670
+KMSKS+ N +DP + YGAD+ R +++ P K
Sbjct: 279 KKMSKSRGNVVDPDDLLERYGADALRYYLLRERPEGK 315
Score = 31.7 bits (73), Expect = 1.7
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 7/31 (22%)
Query: 425 NKKNIFR------LRDWAISRQR-YWGTPIP 448
N +N L+D +I+R WG P+P
Sbjct: 166 NARNEVLSWLKEGLKDLSITRDLFDWGIPVP 196
>gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and
cytosolic family. The leucyl-tRNA synthetases belong to
two families so broadly different that they are
represented by separate models. This model includes both
archaeal and cytosolic eukaryotic leucyl-tRNA
synthetases; the eubacterial and mitochondrial forms
differ so substantially that some other tRNA ligases
score higher by this model than does any eubacterial
LeuS [Protein synthesis, tRNA aminoacylation].
Length = 938
Score = 98.4 bits (245), Expect = 7e-21
Identities = 50/179 (27%), Positives = 74/179 (41%), Gaps = 28/179 (15%)
Query: 9 EIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRY 68
IEK Q W + + ++ +D KF+ PY +G +H GH R +TI +V R+
Sbjct: 2 AIEKKWQKRWEEAHIFEADPDDRE----KFFLTMAYPYLNGVMHAGHCRTFTIPEVSARF 57
Query: 69 MRMNGYNVLMPMGWDAFGMPAENAA--ILNNTSPAKWTYDN------------------V 108
RM G NVL P+G+ G P A I Y V
Sbjct: 58 ERMKGKNVLFPLGFHVTGTPILGLAELIKRRDELTIKNYTEVHAIPREELLKFTDPEYIV 117
Query: 109 SYMKKQ----LSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDP 163
Y ++ S+G +IDW R T P Y ++ +W K+ + G+I K V + P
Sbjct: 118 EYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLKELGLIVKGEHPVRYCP 176
Score = 56.8 bits (137), Expect = 5e-08
Identities = 43/199 (21%), Positives = 87/199 (43%), Gaps = 18/199 (9%)
Query: 635 KMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFSY 694
KMSKSK N + + + +GAD RL+I +A ++ +W + +EG L R++ F
Sbjct: 620 KMSKSKGNVLTLEQAVEKFGADVARLYIADAAETVQDADWKESEVEGTILRLERLYEF-- 677
Query: 695 ILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMK 754
A I NL + S I + +++ +++ ++ Q V
Sbjct: 678 --AEEITKESNLET-GEETSFI-----DRWLESRMNAAIKETYEAMENFQTRKAVK---- 725
Query: 755 IFNILERINSETKFDNNKNTNNDILLYEGMSIFLRVLNPIAPHITHILWKELKYSIQQGD 814
+ + + + N+ +L + ++++L P APH +W+E+ +G
Sbjct: 726 -YALFDLQADVDWYRRRGGVNHKDVLARYLETWIKLLAPFAPHFAEEMWEEVG---NEGF 781
Query: 815 ILNACWPKIDSLALEEEKE 833
+ A +P+ A+++E E
Sbjct: 782 VSLAKFPEASEPAVDKEVE 800
Score = 33.3 bits (76), Expect = 0.67
Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 19/109 (17%)
Query: 261 TTRIDIIYGITFCVISPEHPLAIF-----------AARNNLLLQKFILEYKKNNNIESNN 309
T R + +YG+T C ++P I A NL QK L+YK +
Sbjct: 216 TLRPETVYGVTNCWVNPTITYVIAEVGGEKWITSKEAFENLSYQK--LKYKPIEEVPGKQ 273
Query: 310 LLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAAIGVPAHNKHDF 358
+ K KV +P+ E+ + +V + VPAH D+
Sbjct: 274 FIGK------KVHNPVVGPEVPILPAEFVDTTKGTGVVMSVPAHAPDDY 316
>gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 975
Score = 96.4 bits (241), Expect = 3e-20
Identities = 43/197 (21%), Positives = 73/197 (37%), Gaps = 40/197 (20%)
Query: 3 KKYNFVEIEKITQCYWNKINAYQ----TTENDTRF-----PNGKFYTCSMLPYPSGKLHM 53
+ +F +E+ +W + + ++ E F P P +G H
Sbjct: 9 SQPDFPALEEEVLKFWKENDIFEKSIENREGGPEFVFYDGP----------PTANGLPHY 58
Query: 54 GHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAA--ILNNTSPA---------- 101
GH+ TI DV+ RY M GY V GWD G+P E L +
Sbjct: 59 GHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKF 118
Query: 102 -----KWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKY--YKWNQWIFLKMFKRGIIYK 154
+ ++ LG +D+ T +Y W W +++ +G++YK
Sbjct: 119 NEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVW--WALKQLYDKGLLYK 176
Query: 155 KTGIVNWDPIEKTVLAN 171
+V + P +T L+N
Sbjct: 177 GYRVVPYCPRCETPLSN 193
Score = 65.9 bits (162), Expect = 6e-11
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 12/86 (13%)
Query: 618 HAI--LKLDKKP---VIIGGI------EKMSKSKNNGIDPQTQINTYGADSTRLFIIFSA 666
A+ D+ P V++ G +KMSKS N +DP + YGAD+ R +++ S+
Sbjct: 564 LALSTALFDRPPYKNVLVHGHVLDEDGQKMSKSLGNYVDPFEVFDKYGADALRWYLLSSS 623
Query: 667 PPEKNLEWSDIGI-EGAYRFLNRVWN 691
P ++L +S+ G+ E +FL +WN
Sbjct: 624 APWEDLRFSEDGVREVVRKFLLTLWN 649
Score = 60.1 bits (147), Expect = 4e-09
Identities = 18/29 (62%), Positives = 21/29 (72%)
Query: 432 LRDWAISRQRYWGTPIPIIYCDSCGSVPV 460
RDW ISR RYWGTP+PI C+ CG + V
Sbjct: 443 ARDWNISRNRYWGTPLPIWRCEDCGRIDV 471
Score = 34.3 bits (80), Expect = 0.34
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 780 LYEGMSIFLRVLNPIAPHITHILWKELKYSIQQGDILNACWPKIDSLALEEEKEE-VKLI 838
LY + R+ P P I +++ L + A WP++D ++EE EE + L+
Sbjct: 744 LYTVLETLSRLAAPFTPFIAEEIYQNLTREDAPESVHLADWPEVDESLIDEELEEAMDLV 803
Query: 839 IQI 841
+I
Sbjct: 804 REI 806
>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed.
Length = 897
Score = 95.3 bits (238), Expect = 6e-20
Identities = 48/146 (32%), Positives = 66/146 (45%), Gaps = 32/146 (21%)
Query: 51 LHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMP----AENAA------------- 93
LH+GH R YTI DV+ RY RM GYNVL PM + G P AE A
Sbjct: 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSL 60
Query: 94 -------ILNNTSPAKWTYDNVSY----MKKQLSSLGLAIDWSREIITCSPKYYKWNQWI 142
+ P V Y K+ + +G +IDW RE T P+Y K+ +W
Sbjct: 61 YGIPEEELEKFKDPEYI----VEYFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQ 116
Query: 143 FLKMFKRGIIYKKTGIVNWDPIEKTV 168
F K+ ++G+I K + V + P +
Sbjct: 117 FRKLKEKGLIVKGSHPVRYCPNDNNP 142
Score = 70.3 bits (173), Expect = 3e-12
Identities = 50/213 (23%), Positives = 93/213 (43%), Gaps = 22/213 (10%)
Query: 628 VIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLN 687
V++ G +KMSKSK N I + I YGAD RL++ SA ++ +W + +E R L
Sbjct: 571 VLLEG-KKMSKSKGNVIPLRKAIEEYGADVVRLYLTSSAELLQDADWREKEVESVRRQLE 629
Query: 688 RVWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNT 747
R + I ++F + K ++++I+++ ++ Q
Sbjct: 630 RFYEL-----------AKELIEIGGEEELRFID--KWLLSRLNRIIKETTEAMESFQTRD 676
Query: 748 VVSGCMKIFNILERINSETKFDNNKNTNNDILLYEGMSIFLRVLNPIAPHITHILWKELK 807
V + +L + + N +L E + I++R+L P PH+ LW +L
Sbjct: 677 AVQ--EAFYELLNDLRWYLRRVGEANNK---VLREVLEIWIRLLAPFTPHLAEELWHKLG 731
Query: 808 YSIQQGDILNACWPKIDSLALEEEKEEVKLIIQ 840
+G + WP+ D ++EE E + ++
Sbjct: 732 G---EGFVSLEKWPEPDESKIDEEAELAEEYVK 761
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA
synthetases. Isoleucine amino-acyl tRNA synthetases
(IleRS) catalytic core domain . This class I enzyme is a
monomer which aminoacylates the 2'-OH of the nucleotide
at the 3' of the appropriate tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. IleRS has an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids.
Length = 338
Score = 86.9 bits (216), Expect = 3e-18
Identities = 58/247 (23%), Positives = 85/247 (34%), Gaps = 103/247 (41%)
Query: 431 RLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKENKKFLHVSC 490
RDW ISRQRYWGTPIP+ YC+ CG V
Sbjct: 188 NRRDWCISRQRYWGTPIPVWYCEDCGEV-------------------------------- 215
Query: 491 PKCNKLAFRETDTMDTFVDS--SWYYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHA 548
L R D +D + DS Y + + E+F + P D + G +
Sbjct: 216 -----LVRRVPDVLDVWFDSGSMPYAQLHYPFENEDFE------ELF-PADFILEGSDQ- 262
Query: 549 ILHLLYAR--FWTKLMYNLGLIKFNE-PFIRLLTQGMILNKTYYRIENSSNKKRWYNPDD 605
R F++ L+ L F + P+ ++ G
Sbjct: 263 ------TRGWFYSLLL--LSTALFGKAPYKNVIVHG------------------------ 290
Query: 606 VKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFS 665
LD+ + KMSKS N +DPQ ++ YGAD+ RL++ S
Sbjct: 291 --FVLDEDGR-------------------KMSKSLGNYVDPQEVVDKYGADALRLWVASS 329
Query: 666 APPEKNL 672
++L
Sbjct: 330 DVYAEDL 336
Score = 78.4 bits (194), Expect = 2e-15
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 17/134 (12%)
Query: 45 PYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAI--LNNTSPA- 101
PY +G H GH N + D++ RY M GY V GWD G+P E L +
Sbjct: 10 PYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKD 69
Query: 102 --------------KWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMF 147
++ V ++Q LG+ +DW T P+Y + W+F ++
Sbjct: 70 IEKMGIAEFNAKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLH 129
Query: 148 KRGIIYKKTGIVNW 161
++G++Y+ +V W
Sbjct: 130 EKGLLYRGYKVVPW 143
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 88.8 bits (220), Expect = 6e-18
Identities = 102/454 (22%), Positives = 174/454 (38%), Gaps = 118/454 (25%)
Query: 1 MQKKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYP--SGKLHMGHVRN 58
M K+Y+ +EK +W K + ++ P F +LP P +G LH+GH
Sbjct: 96 MAKQYSPSAVEKSWYAWWEKSGYFGADAKSSKPP---FVI--VLPPPNVTGALHIGHALT 150
Query: 59 YTINDVMYRYMRMNGYNVLMPMGWDAFGMPAE---NAAILNN--------------TSPA 101
I D + R+ RM+GYN L G D G+ + ++ +
Sbjct: 151 AAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVW 210
Query: 102 KWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNW 161
KW + + QL LG ++DWSRE T + K F++++K G+IY+ +VNW
Sbjct: 211 KWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRDIRLVNW 270
Query: 162 DPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVR 221
D +T +++ +V D I ++ E K+P + K V
Sbjct: 271 DCTLRTAISDVEV--------DYI------------------DIKERTLLKVPGYDKPVE 304
Query: 222 LMQVNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPL 281
G+ +F + ++ G++ + TTRI+ + G T I P+
Sbjct: 305 F----------GVLTSFAYPLEG--------GLGEIVVATTRIETMLGDTAIAIHPDDE- 345
Query: 282 AIFAARNNLLLQKFILEYKKNNNIESNNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEK 341
R L KF +HP +++ + +++
Sbjct: 346 -----RYKHLHGKF-------------------------AVHPFNGRKLPIICDAILVDP 375
Query: 342 SYGRAAIGV-PAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSC 400
++G A+ + PAH+ +DF K+H+L + IN+ + D
Sbjct: 376 NFGTGAVKITPAHDPNDFEVGKRHNL---EFINI-------------FTDDGKINSNGGS 419
Query: 401 KYNNMSHKEATNAISTDLIKLGL--GNKKNIFRL 432
++ M A A+ L K GL G K N RL
Sbjct: 420 EFAGMPRFAAREAVIEALQKKGLYRGAKNNEMRL 453
Score = 33.3 bits (76), Expect = 0.64
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 432 LRDWAISRQRYWGTPIPIIY 451
+RDW ISRQ +WG IP Y
Sbjct: 512 IRDWCISRQLWWGHRIPAWY 531
>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed.
Length = 556
Score = 84.9 bits (211), Expect = 6e-17
Identities = 58/223 (26%), Positives = 91/223 (40%), Gaps = 35/223 (15%)
Query: 37 KFYTCSMLPYPSGKLHMGHVRNYTI-NDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAIL 95
+ S PY +G LH+GH+ + DV RY R+ G VL G D G P E AA
Sbjct: 4 RILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKK 63
Query: 96 NNTSPAKWTYDNVSYMKKQLSSLGLAIDW-SREIITCSPKYYKWNQWIFLKMFKRGIIYK 154
+P + K+ LG++ D +R T SP +++ Q FLK+++ G IYK
Sbjct: 64 EGVTPQELADKYHEEHKEDFKKLGISYDLFTR---TTSPNHHEVVQEFFLKLYENGYIYK 120
Query: 155 KTGIVNWDPIEKTVLANEQV-----------------------------INGRGWRSDAI 185
KT + P + L + V IN R S +
Sbjct: 121 KTIEQAYCPSDGRFLPDRYVEGTCPYCGYEGARGDQCDNCGALLDPTDLINPRSKISGST 180
Query: 186 IEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWI 228
E ++ ++ + +AE L +++ WP V +NW+
Sbjct: 181 PEFRETEHFFLDLPAFAERLRAWIESS-GDWPPNVLNFTLNWL 222
Score = 39.8 bits (94), Expect = 0.007
Identities = 32/208 (15%), Positives = 67/208 (32%), Gaps = 33/208 (15%)
Query: 635 KMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEK--NLEWSDIGIEGAYRFLNRVWNF 692
K SKS+ GI + Y D R ++ +AP + W + F+ RV N
Sbjct: 334 KFSKSRGWGIWVDDALERYPPDYLRYYLAANAPENSDTDFTWEE--------FVRRV-NS 384
Query: 693 SYI-----LAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNT 747
L R+++ I F + + + + + +++ ++ ++
Sbjct: 385 ELADKYGNLVNRVLSFIEKY-FGGIVPPGELGDEDRELIAEAEALFKEVGELLEAGEFK- 442
Query: 748 VVSGCMKIFNILERIN---SETK----FDNNKNTNNDIL--LYEGMSIFLRVLNPIAPHI 798
+I + N E ++ +L + + +L P P
Sbjct: 443 --KALEEIMELAREANKYLDEKAPWKLAKTDRERAATVLYTALNLVRLLAVLLYPFLPFS 500
Query: 799 THILWKELKYSIQQGDILNACWPKIDSL 826
+W+ L +I W + L
Sbjct: 501 AQKIWEMLGG----ENIEKLTWESLKPL 524
Score = 31.0 bits (71), Expect = 3.1
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 9/36 (25%)
Query: 414 ISTDLIKLGLGNKKNIFRLRDWAISRQRYWGTPIPI 449
+ + +K GL + AI+R WG P+P
Sbjct: 217 FTLNWLKEGL---------KPRAITRDLDWGIPVPW 243
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed.
Length = 874
Score = 84.0 bits (209), Expect = 2e-16
Identities = 51/225 (22%), Positives = 97/225 (43%), Gaps = 36/225 (16%)
Query: 635 KMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFS- 693
KMSKSK N IDP I+ YGAD+ R + A P +++ + + +EG F N++WN S
Sbjct: 520 KMSKSKGNVIDPLDLIDKYGADALRFTLAALASPGRDIRFDEERVEGYRNFANKLWNASR 579
Query: 694 YILAPRIINIINLNIFHNDFSVIKFNNNQKVFRR----KIHKILQQINRDIKRIQYNTVV 749
++L +N+ D + + R ++++ + ++ + + +++
Sbjct: 580 FVL---------MNLEGADVGELPDPEELSLADRWILSRLNRTVAEVTEALDKYRFDEA- 629
Query: 750 SGCMKIFNI---------LE----RINSETKFDNNKNTNNDILLYEGMSIFLRVLNPIAP 796
++ LE + K + T L + LR+L+P P
Sbjct: 630 --ARALYEFIWNEFCDWYLELAKPVLQEAAK-RATRAT-----LAYVLEQILRLLHPFMP 681
Query: 797 HITHILWKELKYSIQQGDILNACWPKIDSLALEEEKEEVKLIIQI 841
IT LW++L + I+ A WP+ D E + E + + ++
Sbjct: 682 FITEELWQKLAPLGIEESIMLAPWPEADEAIDEAAEAEFEWLKEL 726
Score = 63.2 bits (155), Expect = 5e-10
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 1 MQKKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYP--SGKLHMGHVRN 58
+ K Y+ E+E W + ++ +N K + ++P P +G LHMGH N
Sbjct: 5 LPKTYDPKEVEAKWYQKWEEKGYFKPDDNS-----KKPF-SIVIPPPNVTGSLHMGHALN 58
Query: 59 YTINDVMYRYMRMNGYNVL 77
T+ D++ RY RM GYN L
Sbjct: 59 NTLQDILIRYKRMQGYNTL 77
Score = 62.8 bits (154), Expect = 7e-10
Identities = 23/65 (35%), Positives = 39/65 (60%)
Query: 112 KKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLAN 171
QL LG + DWSRE T K + +F++++++G+IY+ +VNWDP +T L++
Sbjct: 128 TNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLYEKGLIYRGKRLVNWDPKLQTALSD 187
Query: 172 EQVIN 176
+V
Sbjct: 188 LEVEY 192
Score = 40.9 bits (97), Expect = 0.003
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 28/82 (34%)
Query: 432 LRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKENKKFLHVSCP 491
++DW ISRQ +WG IP Y + G V V ++ LL
Sbjct: 398 IQDWCISRQLWWGHRIPAWYDED-GEVYVGREE------PEAREKALLT----------- 439
Query: 492 KCNKLAFRETDTMDT-FVDSSW 512
++ D +DT F SS
Sbjct: 440 -------QDEDVLDTWF--SSA 452
Score = 38.5 bits (91), Expect = 0.015
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 19/105 (18%)
Query: 320 KVLHPLTNQEIKVFVVNYVIEKSYGRAAIGV-PAHNKHDFYFAKKHSLLIKQVINVKNKS 378
V+ PL +EI + YV + +G A+ + PAH+ +DF K+H+L +IN+
Sbjct: 245 TVILPLVGREIPIIADEYV-DPEFGTGAVKITPAHDPNDFEVGKRHNL---PMINI---- 296
Query: 379 YSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGL 423
+D++ N +Y + EA AI DL +LGL
Sbjct: 297 ----------MDEDGTINENPGEYQGLDRFEARKAIVADLEELGL 331
>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase. The methionyl-tRNA
synthetase (metG) is a class I amino acyl-tRNA ligase.
This model appears to recognize the methionyl-tRNA
synthetase of every species, including eukaryotic
cytosolic and mitochondrial forms. The UPGMA difference
tree calculated after search and alignment according to
This model shows an unusual deep split between two
families of MetG. One family contains forms from the
Archaea, yeast cytosol, spirochetes, and E. coli, among
others. The other family includes forms from yeast
mitochondrion, Synechocystis sp., Bacillus subtilis, the
Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori.
The E. coli enzyme is homodimeric, although monomeric
forms can be prepared that are fully active. Activity of
this enzyme in bacteria includes aminoacylation of
fMet-tRNA with Met; subsequent formylation of the Met to
fMet is catalyzed by a separate enzyme. Note that the
protein from Aquifex aeolicus is split into an alpha
(large) and beta (small) subunit; this model does not
include the C-terminal region corresponding to the beta
chain [Protein synthesis, tRNA aminoacylation].
Length = 530
Score = 81.7 bits (202), Expect = 6e-16
Identities = 53/223 (23%), Positives = 82/223 (36%), Gaps = 33/223 (14%)
Query: 38 FYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNN 97
+ LPY +GK H+GH + DV RY R+ GY VL G D G E A
Sbjct: 1 ILITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEG 60
Query: 98 TSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTG 157
+P + K L I + R I T ++ + Q IF K+ + G IY+K
Sbjct: 61 LTPKELVDKYHEEFKDDWKWLN--ISFDRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEI 118
Query: 158 IVNWDPIEKTVLANEQV-----------------------------INGRGWRSDAIIEK 188
+ P + L + V IN R A E
Sbjct: 119 KQLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGRHLEPTELINPRCKICGAKPEL 178
Query: 189 KKIPMYYAKITNYAEELLEYVKKKLPY--WPKKVRLMQVNWIG 229
+ Y+ +++ + +EL E+++K V+ NW+
Sbjct: 179 RDSEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKAQNWLK 221
Score = 55.1 bits (133), Expect = 1e-07
Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 25/147 (17%)
Query: 635 KMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEK--NLEWSDIGIEGAYRFLNRVWNF 692
KMSKS N +DP + +GAD R +++ P K + W D F+ RV
Sbjct: 327 KMSKSLGNVVDPSDLLARFGADILRYYLLKERPLGKDGDFSWED--------FVERV--- 375
Query: 693 SYILAPRIINIINLNI-FHNDF------SVIKFNNNQKVFRRKIHKILQQINRDIKRIQY 745
+ LA ++ N++N + F + S + K + I++ L+QI+ I+ ++
Sbjct: 376 NADLANKLGNLLNRTLGFIKKYFNGVLPSEDITDEEDKKLLKLINEALEQIDEAIESFEF 435
Query: 746 NTVVSGCMKIFNILERINSETKFDNNK 772
+I + +R N D NK
Sbjct: 436 R---KALREIMKLADRGN--KYIDENK 457
Score = 30.0 bits (68), Expect = 7.0
Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Query: 432 LRDWAISRQ-RYWGTPIP 448
L+D AI+R YWG P+P
Sbjct: 224 LKDLAITRDLVYWGIPVP 241
>gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.
Length = 511
Score = 79.5 bits (197), Expect = 2e-15
Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 22/186 (11%)
Query: 37 KFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILN 96
KFY + + YP+GK H+GH DV+ R+ R+ GY+V G D G + A
Sbjct: 2 KFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEA 61
Query: 97 NTSPAKWTYDNVSYMKKQLSSLGLAID-WSREIITCSPKYYKWNQWIFLKMFKRGIIYKK 155
SP + N + K+ +L ++ D + R T P++ + Q IF ++ G IY
Sbjct: 62 GISPQELADRNSAAFKRLWEALNISYDDFIR---TTDPRHKEAVQEIFQRLLANGDIYLG 118
Query: 156 --TGI------VNWDPIEKTVLANEQVINGRGW--RSDAIIEKKKIPMYYAKITNYAEEL 205
G + ++I + A +E + Y+ +++ Y ++L
Sbjct: 119 KYEGWYCVRCEEFYTE--------SELIEDGYRCPPTGAPVEWVEEESYFFRLSKYQDKL 170
Query: 206 LEYVKK 211
LE +
Sbjct: 171 LELYEA 176
Score = 48.0 bits (115), Expect = 2e-05
Identities = 36/201 (17%), Positives = 72/201 (35%), Gaps = 28/201 (13%)
Query: 634 EKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAY---RFLNRVW 690
EKMSKS N IDP ++ YG D+ R F++ P G +G + F+NR+
Sbjct: 298 EKMSKSLGNVIDPFDLVDEYGVDAVRYFLLREIP---------FGQDGDFSREAFINRIN 348
Query: 691 NFSYILAPRIINIIN--LNIFHNDF-----SVIKFNNNQKVFRRKIHKILQQINRDIKRI 743
LA + N+ L++ +F + +L+++ + +
Sbjct: 349 A---DLANDLGNLAQRTLSMIAKNFDGKVPEPGALTEADEALLEAAAALLERVRAAMDNL 405
Query: 744 QYNTVVSGCMKIFNILERINSETK----FDNNKNTNNDIL--LYEGMSIFLRVLNPIAPH 797
++ + + + + E + +L L E + +L P+ P
Sbjct: 406 AFDKALEAILALVRAANKYIDEQAPWSLAKTDPERLATVLYTLLEVLRGIAVLLQPVMPE 465
Query: 798 ITHILWKELKYSIQQGDILNA 818
+ + +L + A
Sbjct: 466 LAAKILDQLGVEEDENRDFAA 486
>gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein;
Provisional.
Length = 995
Score = 78.9 bits (195), Expect = 7e-15
Identities = 100/455 (21%), Positives = 179/455 (39%), Gaps = 115/455 (25%)
Query: 1 MQKKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYP--SGKLHMGHVRN 58
M Y+ E+E +W K ++ E+ +GK + +LP P +G LH+GH
Sbjct: 24 MAASYDPKEVESGWYEWWEKSGFFKPAEDAKSLNSGKKFV-IVLPPPNVTGYLHIGHALT 82
Query: 59 YTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENA---AILNNTSPAKWTYDNVSYMKK-- 113
I D + RY RM G L G D G+ + ++ + + ++KK
Sbjct: 83 GAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVW 142
Query: 114 ------------QLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNW 161
QL LG ++DWSRE+ T + K + F+++++ G+IY+ T +VNW
Sbjct: 143 EWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYRDTRLVNW 202
Query: 162 DPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVR 221
KT + SD +E ++I + K +P + KKV
Sbjct: 203 CCYLKTAI------------SDIEVEFEEIE--------------KPTKITIPGYDKKVE 236
Query: 222 LMQVNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPL 281
+ G+ F + ++D + ++ + TTRI+ + G + P+
Sbjct: 237 V----------GVLWHFAYPLEDSGQ-------EEIVVATTRIETMLGDVAVAVHPKDE- 278
Query: 282 AIFAARNNLLLQKFILEYKKNNNIESNNLLKKSILTQLKVLHPLTN-QEIKVFVVNYVIE 340
YKK L K + +HP ++I + + +++
Sbjct: 279 ----------------RYKK--------LHGKEL------IHPFIPDRKIPIIADDELVD 308
Query: 341 KSYGRAAIGV-PAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINS 399
+G A+ + PAH+ +D+ AK+H+L IN+ D I++ N
Sbjct: 309 MEFGTGAVKITPAHDPNDYEIAKRHNL---PFINIFT--------LDGKINE------NG 351
Query: 400 CKYNNMSHKEATNAISTDLIKLGL--GNKKNIFRL 432
++ M + I +L ++GL N RL
Sbjct: 352 GEFAGMHRFDCRRKIEEELKEMGLLRDKVPNPMRL 386
Score = 33.4 bits (77), Expect = 0.58
Identities = 62/279 (22%), Positives = 103/279 (36%), Gaps = 83/279 (29%)
Query: 634 EKMSKSKNNGIDP----------------------QTQINTY---------------GAD 656
EKMSKSK N IDP + +I G D
Sbjct: 584 EKMSKSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNGIPECGTD 643
Query: 657 STR--LFIIFSAPPEKNLEWSDIGIEGAYR-FLNRVWN---FSYILAPRIINIINLNIFH 710
+ R L NL DI YR F N++WN F+ + + N+ N +F
Sbjct: 644 ALRFGLLAYTQQGRNINL---DINRVVGYRHFCNKLWNAVKFALMKLLKDFNLPNSTLFK 700
Query: 711 NDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQ--------YNTVVSGCMKIFNI---- 758
NN + + IL ++N IK + + +N
Sbjct: 701 P--------NNVESLPWEDKWILHRLNVAIKEVTEGFKEYDFSEATQA----TYNFWLYE 748
Query: 759 -----LE----RINSETKFDNNKNTNNDILLYEGMSIFLRVLNPIAPHITHILWKEL-KY 808
LE R++ ++ + ++ + +L+ + I LR+L+P+ P IT L++ L Y
Sbjct: 749 LCDVYLELIKPRLSKQSDGERKQHAQD--VLHTVLDIGLRLLHPMMPFITEELYQRLPNY 806
Query: 809 SIQQGDILNACWPKIDSLALEEEKE-EVKLIIQINGKFR 846
+ I A +P+ + E + E+K+I+ I R
Sbjct: 807 LRKSESISIAKYPQPNPGWNNEALDEEMKIIMSIVKSIR 845
Score = 33.1 bits (76), Expect = 0.74
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 432 LRDWAISRQRYWGTPIP 448
++DW ISRQ +WG IP
Sbjct: 442 IQDWCISRQLWWGHRIP 458
>gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase.
Length = 974
Score = 74.4 bits (183), Expect = 1e-13
Identities = 51/186 (27%), Positives = 77/186 (41%), Gaps = 25/186 (13%)
Query: 45 PYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAE-------NAAILNN 97
PY +G LH+GH N + D + RY + G V GWD G+P E +
Sbjct: 41 PYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKE 100
Query: 98 TSPAKWTYDNVSYMKK----QLSSL---GLAIDWSREIITCSPKYYKWNQWIFLKMFKRG 150
+P K + KK Q S G+ DW +T P+Y +F +MF G
Sbjct: 101 LTPIKLRAKAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNG 160
Query: 151 IIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYA--KITNYAEELLEY 208
IY+ V+W P +T LA ++ G S +I Y + + +E E
Sbjct: 161 YIYRGRKPVHWSPSSRTALAEAELEYPEGHVSKSI---------YVAFPVVSPSETSPEE 211
Query: 209 VKKKLP 214
+++ LP
Sbjct: 212 LEEFLP 217
Score = 42.8 bits (101), Expect = 8e-04
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 434 DWAISRQRYWGTPIPIIY 451
DW ISRQR WG PIP+ Y
Sbjct: 468 DWCISRQRTWGVPIPVFY 485
Score = 39.4 bits (92), Expect = 0.011
Identities = 55/247 (22%), Positives = 87/247 (35%), Gaps = 72/247 (29%)
Query: 635 KMSKSKNNGIDPQTQIN---------TYGADSTRLFIIFSAPPEKNLEW-SDIGIEG--- 681
KMSKS N +DP+ I YGAD RL++ ++++ D+ I
Sbjct: 611 KMSKSLGNVVDPRLVIEGGKNQKQEPAYGADVLRLWV-------ASVDYTGDVLIGPQIL 663
Query: 682 -----AYRFLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFR---RKIHKIL 733
YR L Y+L NL+ + D +V + + + + ++ ++
Sbjct: 664 KQMSDIYRKLRG--TLRYLLG-------NLHDWKPDNAV-PYEDLPSIDKYALFQLENVV 713
Query: 734 QQINRDIKRIQYNTVVSGCMKIFNILERIN----SETKFDNNKNTNNDILLYEGMSIF-- 787
+I Q+ KIF IL+R S D K D L G + F
Sbjct: 714 NEIEESYDNYQFF-------KIFQILQRFTIVDLSNFYLDVAK----DRLYVGGTTSFTR 762
Query: 788 --------------LRVLNPIAPHITHILWKELKYSIQQGD---ILNACWPKIDSLALEE 830
LR + PI PH+ W+ L + + A WP + L
Sbjct: 763 RSCQTVLAAHLLSLLRAIAPILPHLAEDAWQNLPFQEDGSAAESVFEAGWPTPNEEWLSF 822
Query: 831 EKEEVKL 837
E+V
Sbjct: 823 PAEDVDF 829
>gnl|CDD|219767 pfam08264, Anticodon_1, Anticodon-binding domain of tRNA. This
domain is found mainly hydrophobic tRNA synthetases. The
domain binds to the anticodon of the tRNA.
Length = 148
Score = 68.2 bits (167), Expect = 2e-13
Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 14/143 (9%)
Query: 723 KVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIF------NILERINSETKFDNNKNTNN 776
+ +++K+++++ ++ ++NT S + F LE + + +
Sbjct: 2 RWILSRLNKLIKEVTEAYEKYRFNTAASALYEFFWNDLSDWYLELSKDRLYGEAPDSDRS 61
Query: 777 DI-LLYEGMSIFLRVLNPIAPHITHILWKELKYSIQQGDILNACWPKIDSLALEEEKEE- 834
+LYE + LR+L P P IT LW++L I A WP+ D + +EE EE
Sbjct: 62 AQTVLYEVLETLLRLLAPFMPFITEELWQKLGKK---ESIHLAPWPEPDEVEEDEELEEE 118
Query: 835 ---VKLIIQINGKFRGHIFVKKK 854
+ I+Q K R + +KK
Sbjct: 119 FELRQEIVQAIRKLRSELKIKKS 141
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 74.3 bits (182), Expect = 2e-13
Identities = 53/206 (25%), Positives = 90/206 (43%), Gaps = 32/206 (15%)
Query: 1 MQKKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYP--SGKLHMGHVRN 58
+ K Y E+E +W + + E+D P +LP P +G LH+GH
Sbjct: 15 LAKGYEHREVEARWYPFWQERGYFHGDEHDRTRPPFSI----VLPPPNVTGSLHLGHALT 70
Query: 59 YTINDVMYRYMRMNGYNVLMPMGWDAFGMPAE-------------------NAAILNNTS 99
T+ DV+ R+ RM+G+N L G D G+ + A L
Sbjct: 71 ATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVW 130
Query: 100 PAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIV 159
K Y S + +Q +LG ++DW RE T + + +F+++ + G+IY++ ++
Sbjct: 131 AWKEQYG--SRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIYREKKLI 188
Query: 160 NWDPIEKTVLAN-----EQVINGRGW 180
NW P +T L++ E+ G W
Sbjct: 189 NWCPDCRTALSDLEVEHEEAHQGELW 214
Score = 66.9 bits (163), Expect = 3e-11
Identities = 95/463 (20%), Positives = 155/463 (33%), Gaps = 126/463 (27%)
Query: 432 LRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKENKKFLHVSCP 491
+ DW ISRQ +WG IP YC G V V + PE +C
Sbjct: 413 IHDWCISRQLWWGHQIPAWYCPD-GHVTVARET-----PE-----------------ACS 449
Query: 492 KCNKLAFRE-TDTMDTFVDSS-WYYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAI 549
C K R+ D +DT+ S W + P+ + + + P G H I
Sbjct: 450 TCGKAELRQDEDVLDTWFSSGLWPFSTMGWPE------QTDTLRTFYPTSVMETG--HDI 501
Query: 550 LHLLYARFWTKLMYNLGLIKFNE-PFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKI 608
+ FW M +GL E PF +T Y
Sbjct: 502 IF-----FWVARMMMMGLHFMGEVPF-----------RTVY------------------- 526
Query: 609 TLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPP 668
+H +++ +K +KMSK+K N IDP YGAD+ R +
Sbjct: 527 --------LHPMVRDEKG-------QKMSKTKGNVIDPLVITEQYGADALRFTLAALTAQ 571
Query: 669 EKNLEWSDIGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRK 728
++++ + IEG F N++WN A R ++NL+ + R
Sbjct: 572 GRDIKLAKERIEGYRAFANKLWN-----ASRFA-LMNLSGYQERGEDPA--------RLA 617
Query: 729 IHKILQQINRDIKRIQYNTVVSGCMKIFNILERINSETKF-------------------- 768
+ I ++R TV + ++ F + N+ F
Sbjct: 618 RTPADRWILARLQRAVNETVEA--LEAFRFNDAANAVYAFVWHELCDWYIELAKEALASE 675
Query: 769 DNNKNTNNDILLYEGMSIFLRVLNPIAPHITHILWKELKYSIQ----QGDILNACWPKID 824
D + +L + R+L+P P IT LW L+ + +L A +P+
Sbjct: 676 DPEARRSVQAVLVHCLQTSYRLLHPFMPFITEELWHVLRAQVGASAWADSVLAAEYPRKG 735
Query: 825 SLALEEEKEEVKLIIQING--KFRGHIFVKKKCTTDFIKKIVL 865
E ++ I+ RG + + K + +
Sbjct: 736 EADEAAEAAFRPVLGIIDAVRNIRGEMGIPWKVKLGAQAPVEI 778
Score = 38.0 bits (88), Expect = 0.022
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 320 KVLHPLTNQEIKVFVVNYVIEKSYGRAAIGV-PAHNKHDFYFAKKHSLLIKQVI 372
KV HP+T + + +++ +G A+ V PAH+ +DF K+H L + VI
Sbjct: 259 KVRHPITGRTFPIVADAILVDPKFGTGAVKVTPAHDFNDFEVGKRHGLEMITVI 312
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 64.4 bits (158), Expect = 2e-10
Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 6/120 (5%)
Query: 37 KFYTCSMLPYPSGKLHMGHVRNYT--INDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAI 94
FY + + YP+GK H+GH YT D + RY R+ GY+V G D G + AA
Sbjct: 5 TFYITTPIYYPNGKPHIGHA--YTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAE 62
Query: 95 LNNTSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYK 154
+P ++ D +S K+L L I + + I T ++ K Q IF K++++G IYK
Sbjct: 63 KAGKTPQEYV-DEISAGFKELWKK-LDISYDKFIRTTDERHKKVVQKIFEKLYEQGDIYK 120
Score = 42.9 bits (102), Expect = 8e-04
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 634 EKMSKSKNNGIDPQTQINTYGADSTRLF 661
KMSKSK N +DP+ ++ YG D+ R +
Sbjct: 298 GKMSKSKGNVVDPEELVDRYGLDALRYY 325
>gnl|CDD|237514 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.
Length = 961
Score = 64.6 bits (158), Expect = 2e-10
Identities = 37/147 (25%), Positives = 57/147 (38%), Gaps = 18/147 (12%)
Query: 45 PYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWT 104
PY +G +H+GH N + DV+ R +M G++ GWD G+P E + K
Sbjct: 63 PYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGK-N 121
Query: 105 YDNVS----------YMKKQLSS-------LGLAIDWSREIITCSPKYYKWNQWIFLKMF 147
D V Y + LG+ DW T F K
Sbjct: 122 KDEVPVAEFRKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFA 181
Query: 148 KRGIIYKKTGIVNWDPIEKTVLANEQV 174
+G +Y+ + V W +E+T LA ++
Sbjct: 182 AKGQLYRGSKPVMWSVVERTALAEAEI 208
Score = 46.9 bits (112), Expect = 4e-05
Identities = 57/255 (22%), Positives = 91/255 (35%), Gaps = 75/255 (29%)
Query: 634 EKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSD---IGIE------GAYR 684
EKMSKS N + PQ I GAD RL++ ++++SD IG E YR
Sbjct: 629 EKMSKSLGNTVSPQDVIKQSGADILRLWVA-------SVDYSDDQRIGKEILKQVSETYR 681
Query: 685 FLNRVWN-FSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHK---ILQQINRDI 740
++ N ++L NL F V+ + + ++ R +H+ + +
Sbjct: 682 ---KLRNTLRWLLG-------NLAHFDPGEDVVAYADLPELERYMLHRLNELDGLVREAY 731
Query: 741 KRIQYNTVVSGCMKIFNI-LERINSETKFDNNKNT------NNDI------LLYEGMSIF 787
+ + + N+ L S FD K+ ++ + YE IF
Sbjct: 732 DAYDFKRIYKALVNFVNVDL----SAFYFDIRKDALYCDAPSSLRRRAAQTVFYE---IF 784
Query: 788 LRV---LNPIAPHITHILWKELKYS---------------IQQGDILNACWPKIDSL--- 826
+R+ L PI P W + D L W K ++
Sbjct: 785 VRLTKWLAPILPFTAEEAWLYRYPEEEVSVHLEQFPETPAFWRDDALAEKWRKFRAVRDV 844
Query: 827 ---ALEEEKEEVKLI 838
ALEEE+ K I
Sbjct: 845 VTGALEEERAA-KRI 858
Score = 44.2 bits (105), Expect = 3e-04
Identities = 13/18 (72%), Positives = 13/18 (72%)
Query: 434 DWAISRQRYWGTPIPIIY 451
DW ISRQR WG PIPI
Sbjct: 489 DWVISRQRAWGVPIPIFV 506
>gnl|CDD|215477 PLN02882, PLN02882, aminoacyl-tRNA ligase.
Length = 1159
Score = 63.2 bits (154), Expect = 4e-10
Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 26/190 (13%)
Query: 3 KKYNFVEIEKITQCYWNKINAYQT----TENDTRFPNGKFYTCSMLPYPSGKLHMGHVRN 58
K ++F + E+ W++I+A++T TE + FY P+ +G H GH+
Sbjct: 6 KDFSFPKQEEKILSLWSEIDAFKTQLKRTEGLPEY---IFYDGP--PFATGLPHYGHILA 60
Query: 59 YTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENA-----AILNNTSPAKWTYDN------ 107
TI D++ RY M G++V GWD G+P E I K D
Sbjct: 61 GTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECR 120
Query: 108 ------VSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNW 161
+K ++ G ID+ + T PK+ + W+F ++F++G++YK ++ +
Sbjct: 121 SIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLFEKGLVYKGFKVMPY 180
Query: 162 DPIEKTVLAN 171
KT L+N
Sbjct: 181 STACKTPLSN 190
Score = 47.0 bits (112), Expect = 4e-05
Identities = 13/17 (76%), Positives = 16/17 (94%)
Query: 433 RDWAISRQRYWGTPIPI 449
RDWA+SR R+WGTP+PI
Sbjct: 465 RDWAVSRSRFWGTPLPI 481
Score = 43.9 bits (104), Expect = 4e-04
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 18/67 (26%)
Query: 635 KMSKSKNNGIDPQTQINTYGADSTRLFIIFS----APPEKNLEWSDIGIEG--------- 681
KMSKS N DP I+ YGAD+ RL++I S A P L + + G+ G
Sbjct: 614 KMSKSLKNYPDPNEVIDKYGADALRLYLINSPVVRAEP---LRFKEEGVFGVVKDVFLPW 670
Query: 682 --AYRFL 686
AYRFL
Sbjct: 671 YNAYRFL 677
>gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase.
Length = 958
Score = 63.0 bits (153), Expect = 6e-10
Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 16/146 (10%)
Query: 45 PYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAE-------NAAILNN 97
P +G LHMGH T+ D+M RY RM G L G D G+ + + +
Sbjct: 97 PNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKR 156
Query: 98 TSPAK---------WTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFK 148
T + W + Q+ LG + DWSRE T + + F+++ +
Sbjct: 157 TDLGRDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHE 216
Query: 149 RGIIYKKTGIVNWDPIEKTVLANEQV 174
+G+IY+ + +VNW P +T +++ +V
Sbjct: 217 KGLIYQGSYMVNWSPNLQTAVSDLEV 242
Score = 39.9 bits (93), Expect = 0.007
Identities = 46/207 (22%), Positives = 85/207 (41%), Gaps = 25/207 (12%)
Query: 635 KMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWN--- 691
KMSK+ N IDP I +G D+ R F + ++L S + F N++WN
Sbjct: 583 KMSKTLGNVIDPLDTIKEFGTDALR-FTLALGTAGQDLNLSTERLTSNKAFTNKLWNAGK 641
Query: 692 FSYILAPRIINI-----INLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYN 746
F P + I F + S++ + K+H+++ + + +
Sbjct: 642 FVLQNLPSQSDTSAWEHILACKFDKEESLLSLPLPECWVVSKLHELIDSVTTSYDKYFFG 701
Query: 747 TVVSGCMKIF------NILERINSETKFDNNKN-----TNNDILLYEGMSIFLRVLNPIA 795
V F +E S+T+ ++ + +LLY +I L++L+P
Sbjct: 702 DVGREIYDFFWSDFADWYIEA--SKTRLYHSGDNSALSRAQAVLLYVFENI-LKLLHPFM 758
Query: 796 PHITHILWKELKYSIQQGDILNACWPK 822
P +T LW+ L Y + ++ + WP+
Sbjct: 759 PFVTEELWQALPYRKEA--LIVSPWPQ 783
Score = 33.4 bits (76), Expect = 0.62
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 432 LRDWAISRQRYWGTPIPIIY 451
++DW ISRQ +WG IP+ Y
Sbjct: 448 IKDWCISRQLWWGHRIPVWY 467
Score = 30.7 bits (69), Expect = 4.2
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 24/112 (21%)
Query: 324 PLT-NQEIKVFVVNYVIEKSYGRAAIGV-PAHNKHDFYFAKKHSLLIKQVINVKNKSYSD 381
P+T + + + YV +K +G + + P H+ +D+ A+K L I V+N K+ + ++
Sbjct: 302 PMTYGRHVPIIADRYV-DKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMN-KDGTLNE 359
Query: 382 KIWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNKKNIFRLR 433
W+ EA + +DL + GL KK LR
Sbjct: 360 VAGLYWF--------------------EAREKLWSDLEETGLAVKKEPHTLR 391
>gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 912
Score = 61.7 bits (151), Expect = 1e-09
Identities = 43/185 (23%), Positives = 70/185 (37%), Gaps = 38/185 (20%)
Query: 11 EKITQCYWNKINAYQ----TTENDTRFPNGKFYTCSML----PYPSGKLHMGHVRNYTIN 62
E W + + YQ + +F +L PY +G +H+GH N +
Sbjct: 25 EPEILKRWEENDLYQKIREANKGKPKF---------ILHDGPPYANGDIHIGHALNKILK 75
Query: 63 DVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILN------NTSPA-------KWTYDNVS 109
D++ + M+G++ GWD G+P E S A ++ + V
Sbjct: 76 DIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYALEQVD 135
Query: 110 YMKKQLSSLGLAIDWSREIITCSPKY----YKWNQWIFLKMFKRGIIYKKTGIVNWDPIE 165
++ LG+ DW +T KY + KM K+G +YK V W P
Sbjct: 136 IQREDFKRLGVLGDWDNPYLTMDFKYEANIIR----ALGKMAKKGYLYKGLKPVYWCPDC 191
Query: 166 KTVLA 170
+ LA
Sbjct: 192 GSALA 196
Score = 51.6 bits (125), Expect = 2e-06
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 434 DWAISRQRYWGTPIPIIYCDSCGSV 458
DW ISRQR WG PIPI Y G +
Sbjct: 453 DWCISRQRTWGVPIPIFYHKETGEL 477
Score = 48.6 bits (117), Expect = 1e-05
Identities = 17/27 (62%), Positives = 17/27 (62%)
Query: 634 EKMSKSKNNGIDPQTQINTYGADSTRL 660
KMSKS N IDPQ I YGAD RL
Sbjct: 591 RKMSKSLGNVIDPQDVIKKYGADILRL 617
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 58.2 bits (142), Expect = 1e-08
Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 7/133 (5%)
Query: 40 TCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTS 99
TC+ LPY +G +H+GH+ Y D+ RY RM G+ VL DA G P A +
Sbjct: 7 TCA-LPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGIT 65
Query: 100 PAKWTYDNVSYMKKQ-LSSLGLAID-WSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTG 157
P + K+ + G++ D + T S + + Q I+LK+ + G IY+KT
Sbjct: 66 PEELI-ARYHAEHKRDFAGFGISFDNYGS---THSEENRELAQEIYLKLKENGYIYEKTI 121
Query: 158 IVNWDPIEKTVLA 170
+DP + L
Sbjct: 122 EQLYDPEKGMFLP 134
>gnl|CDD|173617 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putative; Provisional.
Length = 1205
Score = 48.0 bits (114), Expect = 2e-05
Identities = 42/170 (24%), Positives = 66/170 (38%), Gaps = 26/170 (15%)
Query: 6 NFVEIEKITQCYWNKINAYQTTENDTRFPNGK----FYTCSMLPYPSGKLHMGHVRNYTI 61
N VE E+ YW I+A+ T+ + K FY P+ +G H GH+ I
Sbjct: 73 NIVEEEEKVLKYWKSIDAFNTS---NKLAKNKKAYIFYDGP--PFATGLPHYGHLLAGII 127
Query: 62 NDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDN-------------- 107
D + RY G++V GWD G+P E N K
Sbjct: 128 KDCVTRYFYQCGFSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIV 187
Query: 108 VSYMK---KQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYK 154
+ Y K + +G ID+ + T + + W+F +++K +YK
Sbjct: 188 LKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVYK 237
Score = 40.7 bits (95), Expect = 0.004
Identities = 15/21 (71%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
Query: 433 RDWAISRQRYWGTPIPIIYCD 453
+DW ISR RYWGTPIP I+ D
Sbjct: 569 KDWCISRNRYWGTPIP-IWAD 588
Score = 34.9 bits (80), Expect = 0.23
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 634 EKMSKSKNNGIDPQTQINTYGADSTRLFIIFS-APPEKNLEWSDIGI 679
+KMSK N DP ++ YGADS RL++I S A +NL++ + G+
Sbjct: 719 KKMSKRLKNYPDPLYILDKYGADSLRLYLINSVAVRAENLKFQEKGV 765
>gnl|CDD|215518 PLN02959, PLN02959, aminoacyl-tRNA ligase.
Length = 1084
Score = 45.4 bits (108), Expect = 1e-04
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 8 VEIEKITQCYWNKINAYQT-TENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMY 66
+EIE Q +W + ++ ++ P KF+ PY +G LH+GH + + +
Sbjct: 16 LEIEVAVQKWWEEEKVFEAEAGDEPPKPGEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAA 75
Query: 67 RYMRMNGYNVLMPMGWDAFGMPAENAA 93
Y R+ G NVL+P + GMP + +A
Sbjct: 76 AYHRLRGANVLLPFAFHCTGMPIKASA 102
Score = 33.5 bits (77), Expect = 0.55
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 634 EKMSKSKNNGIDPQTQINTYGADSTR 659
EKMSKS N + + I + AD+TR
Sbjct: 717 EKMSKSTGNFLTLRQAIEEFSADATR 742
Score = 30.0 bits (68), Expect = 8.0
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 112 KKQLSSLGLAIDWSREIITC--SPKYYKWNQWIFLKMFKRGIIYK 154
K+ L + GL DW R IT +P Y + +W F K+ K+G I K
Sbjct: 195 KEDLKAFGLGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVK 239
Score = 29.7 bits (67), Expect = 8.9
Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 25/102 (24%)
Query: 779 LLYEGMSIFLRVLNPIAPHITHILWKELKYSIQQGDILNACWPKIDSLALEEEKEEVKLI 838
L++ M + R++ PI PH +W+E+ ++G + A WP E L
Sbjct: 850 LVWRFMDVQTRLITPICPHYAEHVWREILK--KEGFAVTAGWP---------VAGEPDLT 898
Query: 839 IQINGKFRGHIFVKKKCTTDFIKKIVLKNKVIQKYIIHPPKK 880
++ K+ IV K++QK + KK
Sbjct: 899 LKRANKY-------------LQDSIVSFRKLLQKQLA-GSKK 926
>gnl|CDD|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.
Length = 463
Score = 40.5 bits (96), Expect = 0.004
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 628 VIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLN 687
V + G EKMSKS N + + Y + R F++ SA L +S+ +E A + L
Sbjct: 260 VTVNG-EKMSKSLGNFFTIRDLLKKYDPEVLRFFLL-SAHYRSPLNFSEEALEQAKKALE 317
Query: 688 RVWNF 692
R++N
Sbjct: 318 RLYNA 322
Score = 34.3 bits (80), Expect = 0.27
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 37 KFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNV 76
K Y C Y H+GH R++ + DV+ RY+R GY V
Sbjct: 25 KMYVCGPTVY--DYAHIGHARSFVVFDVLRRYLRYLGYKV 62
>gnl|CDD|185675 cd00671, ArgRS_core, catalytic core domain of arginyl-tRNA
synthetases. Arginyl tRNA synthetase (ArgRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate.
There are at least three subgroups of ArgRS. One type
contains both characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. The second
subtype lacks the KMSKS motif; however, it has a lysine
N-terminal to the HIGH motif, which serves as the
functional counterpart to the second lysine of the
KMSKS motif. A third group, which is found primarily
in archaea and a few bacteria, lacks both the KMSKS
motif and the HIGH loop lysine.
Length = 212
Score = 39.1 bits (92), Expect = 0.004
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 45 PYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVL 77
P+G LH+GH+RN I D + R + GY+V
Sbjct: 9 ANPTGPLHVGHLRNAIIGDSLARILEFLGYDVT 41
>gnl|CDD|178532 PLN02946, PLN02946, cysteine-tRNA ligase.
Length = 557
Score = 39.9 bits (93), Expect = 0.006
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 39 YTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNV 76
Y C + Y H+GH R Y DV+YRY++ GY V
Sbjct: 84 YVCGVTAYDLS--HIGHARVYVTFDVLYRYLKHLGYEV 119
>gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 464
Score = 39.5 bits (93), Expect = 0.008
Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 25/127 (19%)
Query: 628 VIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLN 687
+ I G EKMSKS N I + + Y + RLF++ S+ L++S+ +E A + L
Sbjct: 262 LNIDG-EKMSKSLGNFITVRDLLKKYDPEVLRLFLL-SSHYRSPLDFSEELLEEAKKALE 319
Query: 688 RVWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRK-------------IHKILQ 734
R++N + L D + + FR + ++ +
Sbjct: 320 RLYNA----------LRRLRDLAGDAELADLKEFEARFREALDDDFNTPKALAVLFELAK 369
Query: 735 QINRDIK 741
+INR ++
Sbjct: 370 EINRLLE 376
Score = 36.8 bits (86), Expect = 0.044
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 37 KFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLM 78
K Y C Y H+GH R Y + DV+ RY+R GY V
Sbjct: 24 KMYVCGPTVYDY--AHIGHARTYVVFDVLRRYLRYLGYKVTY 63
>gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase.
Length = 801
Score = 39.0 bits (91), Expect = 0.011
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 42 SMLPYPSGKLHMGHVRNYTIN-DVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSP 100
S LPY + H+G++ ++ DV RY R+ GYN + G D +G E A+ N +P
Sbjct: 23 SALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTP 82
>gnl|CDD|223097 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 577
Score = 39.2 bits (92), Expect = 0.011
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 45 PYPSGKLHMGHVRNYTINDVMYRYMRMNGYNV 76
P+G LH+GH+RN I D + R + GY+V
Sbjct: 126 ANPTGPLHIGHLRNAIIGDSLARILEFLGYDV 157
>gnl|CDD|132488 TIGR03447, mycothiol_MshC, cysteine--1-D-myo-inosityl
2-amino-2-deoxy-alpha-D-glucopyranoside ligase.
Members of this protein family are MshC,
l-cysteine:1-D-myo-inosityl
2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an
enzyme that uses ATP to ligate a Cys residue to a
mycothiol precursor molecule, in the second to last
step in mycothiol biosynthesis. This enzyme shows
considerable homology to Cys--tRNA ligases, and many
instances are misannotated as such. Mycothiol is found
in Mycobacterium tuberculosis, Corynebacterium
glutamicum, Streptomyces coelicolor, and various other
members of the Actinobacteria. Mycothiol is an analog
to glutathione [Biosynthesis of cofactors, prosthetic
groups, and carriers, Glutathione and analogs].
Length = 411
Score = 37.4 bits (87), Expect = 0.030
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 34 PNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNV 76
P Y C + PY + H+GH Y D++ R R G+ V
Sbjct: 35 PEAGMYVCGITPYDA--THLGHAATYLTFDLVNRVWRDAGHRV 75
>gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA
synthetase. Cysteinyl tRNA synthetase (CysRS)
catalytic core domain. This class I enzyme is a monomer
which aminoacylates the 2'-OH of the nucleotide at the
3' of the appropriate tRNA. The core domain is based on
the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in
ATP binding.
Length = 213
Score = 36.4 bits (85), Expect = 0.033
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 37 KFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPM 80
Y C Y H+GH R Y + DV+ RY+ GY V
Sbjct: 22 TMYVCGPTVYDY--AHIGHARTYVVFDVLRRYLEDLGYKVRYVQ 63
Score = 31.8 bits (73), Expect = 1.1
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 628 VIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFS 665
+ I G EKMSKS N I + + Y + RL ++ S
Sbjct: 168 LTIDG-EKMSKSLGNFITVRDALKKYDPEVLRLALLSS 204
>gnl|CDD|232981 TIGR00456, argS, arginyl-tRNA synthetase. This model recognizes
arginyl-tRNA synthetase in every completed genome to
date. An interesting feature of the alignment of all
arginyl-tRNA synthetases is a fairly deep split between
two families. One family includes archaeal, eukaryotic
and organellar, spirochete, E. coli, and Synechocystis
sp. The second, sharing a deletion of about 25 residues
in the central region relative to the first, includes
Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and
Mycobacteria, and the Gram-negative bacterium
Helicobacter pylori [Protein synthesis, tRNA
aminoacylation].
Length = 566
Score = 36.6 bits (85), Expect = 0.062
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 45 PYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVL 77
P+G LH+GH+RN I D + R + GY+V+
Sbjct: 121 ANPAGPLHIGHLRNAIIGDSLARILEFLGYDVI 153
>gnl|CDD|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic
domain. This family includes only cysteinyl tRNA
synthetases.
Length = 301
Score = 36.2 bits (84), Expect = 0.064
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 37 KFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNV 76
Y C Y H+GH R+ DV+ RY++ GY+V
Sbjct: 11 NMYVCGPTVY--DDSHIGHARSAVAFDVLRRYLQALGYDV 48
>gnl|CDD|234964 PRK01611, argS, arginyl-tRNA synthetase; Reviewed.
Length = 507
Score = 35.9 bits (84), Expect = 0.089
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 47 PSGKLHMGHVRNYTINDVMYRYMRMNGYNV 76
P+G LH+GH+R+ I D + R + GY+V
Sbjct: 122 PTGPLHVGHLRSAVIGDALARILEFAGYDV 151
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino
acyl-tRNA synthetase. Class I amino acyl-tRNA
synthetase (aaRS) catalytic core domain. These enzymes
are mostly monomers which aminoacylate the 2'-OH of the
nucleotide at the 3' of the appropriate tRNA. The core
domain is based on the Rossman fold and is responsible
for the ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 143
Score = 32.8 bits (75), Expect = 0.30
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Query: 45 PYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWT 104
P+G LH+GH+R D + + R GY V D G + A + +
Sbjct: 6 ITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGENAKAFV 65
Query: 105 YDNVSYMKKQLSSLGL-AIDWSREIIT 130
+ +K+ + + L A D+ T
Sbjct: 66 ERWIERIKEDVEYMFLQAADFLLLYET 92
>gnl|CDD|153413 cd07959, Anticodon_Ia_Leu_AEc, Anticodon-binding domain of archaeal
and eukaryotic cytoplasmic leucyl tRNA synthetases.
This domain is found in leucyl tRNA synthetases (LeuRS),
which belong to the class Ia aminoacyl tRNA synthetases.
It lies C-terminal to the catalytic core domain. In
contrast to other class Ia enzymes, the anticodon is not
used as an identity element in LeuRS (with exceptions
such as Saccharomyces cerevisiae and some other
eukaryotes). No anticodon-binding site can be defined
for this family, which includes archaeal and eukaryotic
cytoplasmic members. LeuRS catalyzes the transfer of
leucine to the 3'-end of its tRNA.
Length = 117
Score = 32.2 bits (74), Expect = 0.32
Identities = 15/84 (17%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 723 KVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIFNILERINSETKFDNNKNTNNDILLYE 782
+ ++++++++ + +Q+ + + L+ + N D LL
Sbjct: 38 RWLLSRLNRLIKETTEAYENMQFREAL---KEGLYELQNDLDWYRERGGAGMNKD-LLRR 93
Query: 783 GMSIFLRVLNPIAPHITHILWKEL 806
+ ++ R+L P APH+ +W EL
Sbjct: 94 FIEVWTRLLAPFAPHLAEEIWHEL 117
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 34.2 bits (79), Expect = 0.34
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 37 KFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMR-MNGYNVLMPMG 81
++YTC Y S H+GH R Y D++ R + GY+V M
Sbjct: 62 RWYTCGPTVYDSS--HLGHARTYVTFDIIRRILEDYFGYDVFYVMN 105
>gnl|CDD|183518 PRK12418, PRK12418, cysteinyl-tRNA synthetase; Provisional.
Length = 384
Score = 33.8 bits (78), Expect = 0.38
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 39 YTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNV 76
Y C + PY + H+GH Y D++ R R G++V
Sbjct: 13 YVCGITPYDA--THLGHAATYLAFDLVNRVWRDAGHDV 48
>gnl|CDD|234829 PRK00750, lysK, lysyl-tRNA synthetase; Reviewed.
Length = 510
Score = 34.0 bits (79), Expect = 0.40
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 634 EKMSKSKNNGIDPQTQINTYG-ADSTRLFIIFSAPPEKNLEWSDI 677
EK+SKSK N I + Y +S RLF+ P K L++ I
Sbjct: 279 EKISKSKGNVITIE-DWLEYAPPESLRLFMFARPKPAKRLDFDVI 322
>gnl|CDD|173900 cd00674, LysRS_core_class_I, catalytic core domain of class I
lysyl tRNA synthetase. Class I lysyl tRNA synthetase
(LysRS) catalytic core domain. This class I enzyme is a
monomer which aminoacylates the 2'-OH of the nucleotide
at the 3' of the appropriate tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. The class I LysRS is found only in archaea and
some bacteria and has evolved separately from class II
LysRS, as the two do not share structural or sequence
similarity.
Length = 353
Score = 32.7 bits (75), Expect = 0.88
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 628 VIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAY---- 683
+ + G KMS SK N I P + + R PEK++ + D+ I Y
Sbjct: 268 IGLKGGGKMSSSKGNVITPSDWLEVAPPEVLRYLYARRKNPEKHIGF-DLDILRLYDEYD 326
Query: 684 RFLNRVWN 691
R + +
Sbjct: 327 RLERKYYG 334
>gnl|CDD|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase. This model finds the
cysteinyl-tRNA synthetase from most but not from all
species. The enzyme from one archaeal species,
Archaeoglobus fulgidus, is found but the equivalent
enzymes from some other Archaea, including
Methanococcus jannaschii, are not found, although
biochemical evidence suggests that tRNA(Cys) in these
species are charged directly with Cys rather than
through a misacylation and correction pathway as for
tRNA(Gln) [Protein synthesis, tRNA aminoacylation].
Length = 464
Score = 32.7 bits (75), Expect = 0.95
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 37 KFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNV 76
K Y C Y H+GH R + DV+ RY+R GY V
Sbjct: 23 KMYVCGPTVY--DYCHIGHARTAIVFDVLRRYLRYLGYKV 60
>gnl|CDD|224302 COG1384, LysS, Lysyl-tRNA synthetase (class I) [Translation,
ribosomal structure and biogenesis].
Length = 521
Score = 32.7 bits (75), Expect = 1.0
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 628 VIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWS-DIGIEGAY 683
+++ G KMS SK N I + + R ++I P +++++ D+GI
Sbjct: 270 ILLKGGGKMSSSKGNVISLSDWLEVAPPEVLR-YLIARTKPNRHIDFDFDLGILKLV 325
>gnl|CDD|153414 cd07960, Anticodon_Ia_Ile_BEm, Anticodon-binding domain of
bacterial and eukaryotic mitochondrial isoleucyl tRNA
synthetases. This domain is found in isoleucyl tRNA
synthetases (IleRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon. This family includes
bacterial and eukaryotic mitochondrial members. IleRS
catalyzes the transfer of isoleucine to the 3'-end of
its tRNA.
Length = 180
Score = 31.3 bits (72), Expect = 1.1
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 780 LYEGMSIFLRVLNPIAPHITHILWKELKYSIQQGDILNACWPKIDSLALEEEKEE 834
LY + L++L PI P +W+ L ++ + WP++ +EE EE
Sbjct: 113 LYHILDALLKLLAPILPFTAEEVWEHLPGEKKEESVFLEDWPELPEEWKDEELEE 167
>gnl|CDD|216097 pfam00750, tRNA-synt_1d, tRNA synthetases class I (R). Other
tRNA synthetase sub-families are too dissimilar to be
included. This family includes only arginyl tRNA
synthetase.
Length = 345
Score = 32.1 bits (73), Expect = 1.4
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 45 PYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVL 77
P P+ +H+GH+R+ I D + R + GY+V+
Sbjct: 28 PNPAKPIHVGHLRSTIIGDALSRLLEFLGYDVV 60
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 32.2 bits (74), Expect = 1.6
Identities = 15/66 (22%), Positives = 21/66 (31%), Gaps = 6/66 (9%)
Query: 647 QTQINTYGADSTRLFIIFSAPPE---KNLEWSDIGIEGAYRFLNRVWNFSYIL-APRIIN 702
T RL I PPE ++G F V F Y P ++
Sbjct: 433 WTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEF-ENVS-FRYGPDDPPVLE 490
Query: 703 IINLNI 708
++L I
Sbjct: 491 DLSLEI 496
>gnl|CDD|153416 cd07962, Anticodon_Ia_Val, Anticodon-binding domain of valyl tRNA
synthetases. This domain is found in valyl tRNA
synthetases (ValRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon. ValRS catalyzes the
transfer of valine to the 3'-end of its tRNA.
Length = 135
Score = 30.2 bits (69), Expect = 1.8
Identities = 24/141 (17%), Positives = 55/141 (39%), Gaps = 24/141 (17%)
Query: 679 IEGAYRFLNRVWN-FSYILAPRIINIINLNIFHNDFSVIKFNNNQ-----KVFRRKIHKI 732
+EG F N++WN ++L + D + + + +++K
Sbjct: 6 VEGGRNFCNKLWNAARFVL-----------MNLEDDDEPEEDPESLSLADRWILSRLNKT 54
Query: 733 LQQINRDIKRIQYNTVVSGCMKIF------NILERINSETKFDNNKNTNNDI-LLYEGMS 785
++++ ++ +++ + + F LE + ++ + LY +
Sbjct: 55 VEEVTEALENYRFSEAATALYEFFWNDFCDWYLELVKPRLYGEDEEEKKAARATLYYVLE 114
Query: 786 IFLRVLNPIAPHITHILWKEL 806
LR+L+P P IT LW+ L
Sbjct: 115 TILRLLHPFMPFITEELWQRL 135
>gnl|CDD|226009 COG3478, COG3478, Predicted nucleic-acid-binding protein containing
a Zn-ribbon domain [General function prediction only].
Length = 68
Score = 28.2 bits (63), Expect = 2.8
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 452 CDSCGSVPVPEKDLPVILPETCVPNNLLKENKKFLHVSCPKCNKLAFRETDTMDT 506
C CG+ EK+ + + +N KF+ ++C C F T
Sbjct: 7 CPKCGNTNYEEKE--IAATGGGLSKIFDVQNNKFIVITCKNCGYTEFYSAKISTT 59
>gnl|CDD|153415 cd07961, Anticodon_Ia_Ile_ABEc, Anticodon-binding domain of
archaeal, bacterial, and eukaryotic cytoplasmic
isoleucyl tRNA synthetases. This domain is found in
isoleucyl tRNA synthetases (IleRS), which belong to the
class Ia aminoacyl tRNA synthetases. It lies C-terminal
to the catalytic core domain, and recognizes and
specifically binds to the tRNA anticodon. This family
includes bacterial, archaeal, and eukaryotic cytoplasmic
members. IleRS catalyzes the transfer of isoleucine to
the 3'-end of its tRNA.
Length = 183
Score = 30.2 bits (69), Expect = 3.2
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 16/71 (22%)
Query: 780 LYEGMSIFLRVLNPIAPHITHILWKELKYSIQQGDILNAC-------WPKIDSL----AL 828
LYE + R++ P P IT +++ L+ ++ +A WP++D L
Sbjct: 114 LYEVLLTLSRLMAPFTPFITEEIYQNLR-----RELGDAPESVHLLDWPEVDESLIDEEL 168
Query: 829 EEEKEEVKLII 839
EE E V+ I+
Sbjct: 169 EEAMELVREIV 179
>gnl|CDD|184940 PRK14977, PRK14977, bifunctional DNA-directed RNA polymerase A'/A''
subunit; Provisional.
Length = 1321
Score = 31.1 bits (70), Expect = 3.6
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 18/66 (27%)
Query: 452 CDSCGSVPVPEKDLPV------------ILPETCVPNNLLKENKKFL------HVSCPKC 493
C C + +P++DL V +PE + + +++E + + CP C
Sbjct: 101 CHKCAKLKLPQEDLNVFKLIEEAHAAARDIPEKRIDDEIIEEVRDQVKVYAKKAKECPHC 160
Query: 494 NKLAFR 499
Sbjct: 161 GAPQHE 166
>gnl|CDD|216786 pfam01921, tRNA-synt_1f, tRNA synthetases class I (K). This family
includes only lysyl tRNA synthetases from prokaryotes.
Length = 357
Score = 30.7 bits (70), Expect = 3.9
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 628 VIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEK 670
+++ G KMS SK N I + + +S R F++F P+K
Sbjct: 272 ILLKGGGKMSSSKGNVITIEDWLEYAPPESLR-FLMFRVKPKK 313
>gnl|CDD|223391 COG0314, MoaE, Molybdopterin converting factor, large subunit
[Coenzyme metabolism].
Length = 149
Score = 29.6 bits (67), Expect = 4.1
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 202 AEELLEYVKKKLPYWPKKVRLMQVNWIG 229
E +++ +K + P W K+ W+G
Sbjct: 111 CEYIIDRLKHRAPIWKKEHTEDGERWVG 138
>gnl|CDD|173000 PRK14534, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 481
Score = 30.6 bits (69), Expect = 4.4
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 31 TRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPM 80
F + K Y C P H+G+ R Y D++ + +R+ YNV M
Sbjct: 17 KNFSDVKVYACG--PTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAM 64
>gnl|CDD|173001 PRK14535, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 699
Score = 30.5 bits (68), Expect = 4.6
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 35 NGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGY 74
N + Y C M Y H+GH R + D++ R++R GY
Sbjct: 248 NVRMYVCGMTVY--DYCHLGHARVMVVFDMIARWLRECGY 285
>gnl|CDD|237793 PRK14703, PRK14703, glutaminyl-tRNA synthetase/YqeY domain fusion
protein; Provisional.
Length = 771
Score = 30.5 bits (69), Expect = 5.0
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 10/32 (31%)
Query: 31 TRFPNGKFYTCSMLPYPSGKLHMGHVRNYTIN 62
TRFP P P+G LH+GH ++ +N
Sbjct: 34 TRFP----------PEPNGYLHIGHAKSILLN 55
>gnl|CDD|184731 PRK14536, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 490
Score = 29.9 bits (67), Expect = 6.2
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 37 KFYTC--SMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPM 80
+ Y C ++ Y H+G++R Y D + R + GY V M
Sbjct: 25 RLYGCGPTVYNYA----HIGNLRTYVFQDTLRRTLHFLGYRVTHVM 66
>gnl|CDD|233993 TIGR02745, ccoG_rdxA_fixG, cytochrome c oxidase accessory protein
FixG. Member of this ferredoxin-like protein family are
found exclusively in species with an operon encoding the
cbb3 type of cytochrome c oxidase (cco-cbb3), and near
the cco-cbb3 operon in about half the cases. The
cco-cbb3 is found in a variety of proteobacteria and
almost nowhere else, and is associated with oxygen use
under microaerobic conditions. Some (but not all) of
these proteobacteria are also nitrogen-fixing, hence the
gene symbol fixG. FixG was shown essential for
functional cco-cbb3 expression in Bradyrhizobium
japonicum.
Length = 434
Score = 30.0 bits (68), Expect = 6.2
Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 5/109 (4%)
Query: 541 YIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRW 600
Y + I L A T+ +L +++ + G++ N +I N + +
Sbjct: 305 YAAVLAIVIGLLAIALS-TREPMDLNVLRDRNLLYVRNSDGVVENTYTLKILNKTEQPHE 363
Query: 601 YN---PDDVKITLDKKNKPIH-AILKLDKKPVIIGGIEKMSKSKNNGID 645
Y I ++ PIH + K PV + KS I+
Sbjct: 364 YYLSVLGLPGIKIEGPGAPIHVKAGEKVKLPVFLRTPPDALKSGITSIE 412
>gnl|CDD|178772 PLN03233, PLN03233, putative glutamate-tRNA ligase; Provisional.
Length = 523
Score = 29.6 bits (66), Expect = 8.1
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 10/37 (27%)
Query: 31 TRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYR 67
TRFP P PSG LH+GH + +ND R
Sbjct: 14 TRFP----------PEPSGYLHIGHAKAALLNDYYAR 40
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.139 0.433
Gapped
Lambda K H
0.267 0.0849 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 46,783,333
Number of extensions: 4763141
Number of successful extensions: 4539
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4390
Number of HSP's successfully gapped: 222
Length of query: 893
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 787
Effective length of database: 6,236,078
Effective search space: 4907793386
Effective search space used: 4907793386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (27.8 bits)