RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2890
(893 letters)
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding,
protein biosynthesis I aminoacyl-tRNA synthetase,
ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A
4ari_A* 4as1_A*
Length = 880
Score = 1237 bits (3203), Expect = 0.0
Identities = 373/901 (41%), Positives = 542/901 (60%), Gaps = 50/901 (5%)
Query: 1 MQKKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYT 60
MQ++Y EIE Q +W++ ++ TE++++ K+Y SMLPYPSG+LHMGHVRNYT
Sbjct: 21 MQEQYRPEEIESKVQLHWDEKRTFEVTEDESK---EKYYCLSMLPYPSGRLHMGHVRNYT 77
Query: 61 INDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGL 120
I DV+ RY RM G NVL P+GWDAFG+PAE AA+ NNT+PA WTYDN++YMK QL LG
Sbjct: 78 IGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKMLGF 137
Query: 121 AIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGW 180
DWSRE+ TC+P+YY+W Q F +++K+G++YKKT VNW P ++TVLANEQVI+G W
Sbjct: 138 GYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCW 197
Query: 181 RSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIGKSKGIFLAFPH 240
R D +E+K+IP ++ KIT YA+ELL + KL +WP V+ MQ NWIG+S+G+ + F
Sbjct: 198 RCDTKVERKEIPQWFIKITAYADELLNDL-DKLDHWPDTVKTMQRNWIGRSEGVEITFN- 255
Query: 241 NIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYK 300
+ D + L ++TTR D G T+ ++ HPLA AA NN L FI E +
Sbjct: 256 -VNDYDN--------TLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNPELAAFIDECR 306
Query: 301 KNNNIE--SNNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAAI-GVPAHNKHD 357
E + KK + T K +HPLT +EI V+ N+V+ YG A+ VP H++ D
Sbjct: 307 NTKVAEAEMATMEKKGVDTGFKAVHPLTGEEIPVWAANFVL-MEYGTGAVMAVPGHDQRD 365
Query: 358 FYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAISTD 417
+ FA K+ L IK VI + S D + + +K NS ++N + H+ A NAI+
Sbjct: 366 YEFASKYGLNIKPVILAADGSEPD-LSQQALTEKG--VLFNSGEFNGLDHEAAFNAIADK 422
Query: 418 LIKLGLGNKKNIFRLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPN- 476
L +G+G +K +RLRDW +SRQRYWG PIP++ + +P P+ LPVILPE V +
Sbjct: 423 LTAMGVGERKVNYRLRDWGVSRQRYWGAPIPMVTLEDGTVMPTPDDQLPVILPEDVVMDG 482
Query: 477 --NLLKENKKFLHVSCPKCNKLAFRETDTMDTFVDSSWYYMRYISPKLENFMIDDNKINY 534
+ +K + ++ + A RETDT DTF++SSWYY RY P+ + M+D NY
Sbjct: 483 ITSPIKADPEWAKTTVN--GMPALRETDTFDTFMESSWYYARYTCPQYKEGMLDSEAANY 540
Query: 535 WMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENS 594
W+PVD YIGGIEHAI+HLLY RF+ KLM + G++ +EP +LL QGM+L +Y
Sbjct: 541 WLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQGMVLADAFYY-VGE 599
Query: 595 SNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYG 654
+ ++ W +P D + D+K + + A ++ G+ KMSKSKNNGIDPQ + YG
Sbjct: 600 NGERNWVSPVDAIVERDEKGRIVKAKDA-AGHELVYTGMSKMSKSKNNGIDPQVMVERYG 658
Query: 655 ADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHNDFS 714
AD+ RLF++F++P + LEW + G+EGA RFL RVW Y + +
Sbjct: 659 ADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVYEHTAKGDV--------AALN 710
Query: 715 VIKFNNNQKVFRRKIHKILQQINRDI-KRIQYNTVVSGCMKIFNILERINSETKFDNNKN 773
V NQK RR +HK + ++ DI +R +NT ++ M++ N L + ++ +
Sbjct: 711 VDALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELMNKLAKAPTDGE------ 764
Query: 774 TNNDILLYEGMSIFLRVLNPIAPHITHILWKELKYSIQQGDILNACWPKIDSLALEEEKE 833
+ L+ E + +R+LNP PHI LW+ELK GDI NA WP D A+ E +
Sbjct: 765 -QDRALMQEALLAVVRMLNPFTPHICFTLWQELKGE---GDIDNAPWPVADEKAMVE--D 818
Query: 834 EVKLIIQINGKFRGHIFVKKKCTTDFIKKIVLKNKVIQKYII-HPPKKFFIIPNKLVNII 892
+++Q+NGK R I V T + +++ + ++ KY+ +K +P KL+N++
Sbjct: 819 STLVVVQVNGKVRAKITVPVDATEEQVRERAGQEHLVAKYLDGVTVRKVIYVPGKLLNLV 878
Query: 893 I 893
+
Sbjct: 879 V 879
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein
biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus}
PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Length = 878
Score = 1194 bits (3092), Expect = 0.0
Identities = 328/913 (35%), Positives = 507/913 (55%), Gaps = 60/913 (6%)
Query: 3 KKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTIN 62
+KYN IE Q +W + + + K Y M PYPSG LHMGH++NYT+
Sbjct: 2 EKYNPHAIEAKWQRFWEEKGFMKAKDLPGGRG--KQYVLVMFPYPSGDLHMGHLKNYTMG 59
Query: 63 DVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGLAI 122
DV+ R+ RM GY VL PMGWDAFG+PAENAA+ P WTY N+ K+ L +G+
Sbjct: 60 DVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILY 119
Query: 123 DWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWR- 181
DW RE+ TC P+YY+WNQWIFLKM+++G+ Y+ G+VNW P +TVLANEQV+ GR WR
Sbjct: 120 DWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRH 179
Query: 182 SDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIGKSKGIFLAFPHN 241
D +EK+++ +Y +IT YAE LL+ + + L WP+KV+ MQ WIG+S+G + FP
Sbjct: 180 EDTPVEKRELEQWYLRITAYAERLLKDL-EGLN-WPEKVKAMQRAWIGRSEGAEILFPVE 237
Query: 242 IKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLA--IFAARNNLLLQKFILEY 299
K+ ++ +FTTR D ++G TF V++PEHPL + A + ++
Sbjct: 238 GKE----------VRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAA 287
Query: 300 KKNNNIE--SNNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAAI-GVPAHNKH 356
K+ IE + K + L+P T + I ++ +YV+ YG AI VPAH++
Sbjct: 288 KRKTEIERQAEGREKTGVFLGAYALNPATGERIPIWTADYVL-FGYGTGAIMAVPAHDQR 346
Query: 357 DFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAIST 416
D+ FA+K L IK+VI + + + Y + +NS ++ +E +
Sbjct: 347 DYEFARKFGLPIKKVIERPGEPLPE-PLERAYEEP--GIMVNSGPFDGTESEEGKRKVIA 403
Query: 417 DLIKLGLGNKKNIFRLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPN 476
L + GLG + +RLRDW ISRQRYWGTPIP+++C++CG VPVPE++LPV+LP+
Sbjct: 404 WLEEKGLGKGRVTYRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVE 463
Query: 477 NL-------LKENKKFLHVSCPKCNKLAFRETDTMDTFVDSSWYYMRYISPKLENFMIDD 529
++ L+ + +F +CPKC A R+TDTMDTF DSSWYY+RY P + D
Sbjct: 464 DIRPKGKSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDP 523
Query: 530 NKINYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYY 589
K N WMPVDQYIGG+EHA+LHLLY+RF+TK +++LG++K EPF L TQGM+L T +
Sbjct: 524 EKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDF 583
Query: 590 RI-ENSSNKKRWYNPDDVKITLDKKNKPIHAILKL-------DKKPVIIGGIEKMSKSKN 641
E + R P +++ + + + + K+ + + + MSKSK
Sbjct: 584 GPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKG 643
Query: 642 NGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFSYILAPRII 701
NG+ + GAD R+ I+F+APPE + W++ G++GA+RFLNR++ ++
Sbjct: 644 NGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRIYRRVAEDREALL 703
Query: 702 NIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSGCMKIFNILER 761
F + K+H+ L+++ D++ +++NT ++ M+ N L
Sbjct: 704 ETS------GVFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYE 757
Query: 762 INSETKFDNNKNTNNDILLYEGMSIFLRVLNPIAPHITHILWKELKYSIQQGDILNACWP 821
K+ + + +L++L P APH+ LW + A WP
Sbjct: 758 Y--------RKDRPVTPVYRTAIRYYLQMLFPFAPHLAEELWHWFWP----DSLFEAGWP 805
Query: 822 KIDSLALEEEKEEVKLIIQINGKFRGHIFVKKKCTTDFIKKIVLKNKVIQKYII-HPPKK 880
++D ALE+ + V++ +Q+NG G I + K + + LK + ++ ++ K
Sbjct: 806 ELDEKALEK--DVVEVAVQVNGAVAGTIHIPKDAPLEVARAEALKVRNVRAHLEGKEVVK 863
Query: 881 FFIIPNKLVNIII 893
+P K++N+++
Sbjct: 864 EIYVPGKILNLVV 876
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino
acid, aminoacylation, trnaLeu, structural genomics;
2.05A {Pyrococcus horikoshii}
Length = 810
Score = 486 bits (1251), Expect = e-159
Identities = 149/894 (16%), Positives = 281/894 (31%), Gaps = 176/894 (19%)
Query: 3 KKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTIN 62
+ NF IE+ Q W + ++ D + KFY PY SG LH+GH R YTI
Sbjct: 2 AELNFKAIEEKWQKRWLEAKIFEPNIRD-KPKEKKFYITVAFPYLSGHLHVGHARTYTIP 60
Query: 63 DVMYRYMRMNGYNVLMPMGWDAFGMPAENAA------------------------ILNNT 98
DV+ R+ RM GYNVL PM W G P A +
Sbjct: 61 DVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFE 120
Query: 99 SPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCS--PKYYKWNQWIFLKMFKRGIIYKKT 156
P + K+ G ++DWSRE T S P + K+ +W F K+ ++G I K
Sbjct: 121 DPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGA 180
Query: 157 GIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYW 216
V WDP+ T L + ++ G + ++ E +
Sbjct: 181 HRVRWDPVVGTPLGDHDLMEGEDV------PILDYIIIKFELRENGEVIYLPAATL---R 231
Query: 217 PKKVRLMQVNWIGKS----------------KGIFLAFPHNIKDPNKNNKLIQNGKLWIF 260
P+ V + W+ + + + + ++ ++I+ K
Sbjct: 232 PETVYGVTNMWVNPNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKL 291
Query: 261 T------------------TRIDIIYGITFCVISPEHPLAIFAA-----RNNLLLQKFIL 297
+D + P H A R +L+K+ +
Sbjct: 292 IGKYVRNPVSGDEVIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDI 351
Query: 298 EYKKNNNIESNNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEK--------SYGRAAIG 349
+ + NI +L+K + + IK +E+ Y +
Sbjct: 352 DPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFK 411
Query: 350 VPAHNKHDFYFAKK--HSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSH 407
VP + K+ ++++ I +++K + ++ I+ + + +
Sbjct: 412 VPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGN 471
Query: 408 KEATNAISTDLIKLGLGNK-------KNIFRLRDWAISRQRYWGTPIPIIYCD-----SC 455
E L ++ + + I L A +R+ GTP+P S
Sbjct: 472 PEWKEKARKALERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSD 531
Query: 456 GSVPVPEKDLPVILPETCVPNNL--LKENKKFLHVSCPKCNKLAFRETDTMDTFVDSSWY 513
++ + + + + L K +F + + T + +
Sbjct: 532 STIYMAYYTISRHINKLRQEGKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPA--- 588
Query: 514 YMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEP 573
E + YW P+D G + HL + F ++
Sbjct: 589 ---------EIIHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFR-----EEHW 634
Query: 574 FIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGI 633
+ G +
Sbjct: 635 PKGIAVNGFGTLEG---------------------------------------------- 648
Query: 634 EKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFS 693
+KMSKSK N ++ I GAD RL+I+ A + + +W + + + R +
Sbjct: 649 QKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYELI 708
Query: 694 YILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVV-SGC 752
A ++ + + +++K +++ ++ + T V
Sbjct: 709 SQFAEY-----------EVKGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAF 757
Query: 753 MKIFNILERINSETKFDNNKNTNNDILLYEGMSIFLRVLNPIAPHITHILWKEL 806
I N L T+ + +L +++R++ P PHI LW++L
Sbjct: 758 YSIMNDLRWYLRRTE--GRDDEAKRYVLRTLADVWVRLMAPFTPHICEELWEKL 809
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 474 bits (1222), Expect = e-153
Identities = 164/980 (16%), Positives = 297/980 (30%), Gaps = 254/980 (25%)
Query: 3 KKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTIN 62
+ NF IE+ Q W + ++ D + KFY PY SG LH+GH R YTI
Sbjct: 2 AELNFKAIEEKWQKRWLEAKIFEPNIRD-KPKEKKFYITVAFPYLSGHLHVGHARTYTIP 60
Query: 63 DVMYRYMRMNGYNVLMPMGWDAFGMPAENAA------------------------ILNNT 98
DV+ R+ RM GYNVL PM W G P A +
Sbjct: 61 DVIARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFE 120
Query: 99 SPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCS--PKYYKWNQWIFLKMFKRGIIYKKT 156
P + K+ G ++DWSRE T S P + K+ +W F K+ ++G I K
Sbjct: 121 DPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGA 180
Query: 157 GIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYW 216
V WDP+ T L + ++ G + ++ E +
Sbjct: 181 HRVRWDPVVGTPLGDHDLMEGEDV------PILDYIIIKFELRENGEVI----------- 223
Query: 217 PKKVRLMQVNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVIS 276
L T R + +YG+T ++
Sbjct: 224 ---------------------------------------YLPAATLRPETVYGVTNMWVN 244
Query: 277 PEHPLAIFAARNNLLLQKFILEYKKNNNIESNNL-------LKKSILTQLKVLHPLTNQE 329
P R + +I+ + + + K L V +P++ E
Sbjct: 245 PNATYVKAKVRRKDKEETWIVSKEAAYKLSFQDREIEVIEEFKGEKLIGKYVRNPVSGDE 304
Query: 330 IKVFVVNYVIEKSYGRAAIGVPAHNKHDFY----------FAKKHSLLIKQVINV----- 374
+ + +V + + VPAH D +K+ + + V N+
Sbjct: 305 VIILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISL 364
Query: 375 -----------------------KNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEAT 411
K+K ++ K Y + + Y +E
Sbjct: 365 IKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQEVK 424
Query: 412 NAISTDLIKLGLG-------NKKNIFRLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKD 464
AI+ ++++ G+ K I R + A+ + + I + +
Sbjct: 425 EAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALER 484
Query: 465 LPVILPETCVPNNLLKENKKFLHVSCPKC----NKLAFRETDTMDTFVDSSWYYMRYISP 520
+ ++ +C + L + +++ DS+ Y Y
Sbjct: 485 MKILPET--RRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWVIESLSDSTIYMAYYTIS 542
Query: 521 KLENFMIDDNKI--------------------------------------------NYWM 536
+ N + + K+ YW
Sbjct: 543 RHINKLRQEGKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWY 602
Query: 537 PVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSN 596
P+D G + HL + F + + + G +
Sbjct: 603 PLDWRCSGKDLIPNHLTFFIFNHV-----AIFREEHWPKGIAVNGFGTLEG--------- 648
Query: 597 KKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGAD 656
+KMSKSK N ++ I GAD
Sbjct: 649 -------------------------------------QKMSKSKGNVLNFIDAIEENGAD 671
Query: 657 STRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHNDFSVI 716
RL+I+ A + + +W + + + R + I + N
Sbjct: 672 VVRLYIMSLAEHDSDFDWRRKEVGKLRKQIERFYEL-------ISQFAEYEVKGNV---- 720
Query: 717 KFNNNQKVFRRKIHKILQQINRDIKRIQYNTVV-SGCMKIFNILERINSETKFDNNKNTN 775
+ + + +++K +++ ++ + T V I N L T+ +++
Sbjct: 721 ELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYLRRTEGRDDE--A 778
Query: 776 NDILLYEGMSIFLRVLNPIAPHITHILWKELKYSIQQGDILNACWPKIDSLALEEEKE-E 834
+L +++R++ P PHI LW++L G + A WP+ E E E
Sbjct: 779 KRYVLRTLADVWVRLMAPFTPHICEELWEKLGGE---GFVSLAKWPEPVEEWWNETIEAE 835
Query: 835 VKLIIQINGKFRGHIFVKKK 854
+ I + + I V K
Sbjct: 836 EEFIRSVMEDIKEIIEVAKI 855
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia
coli} PDB: 2ajh_A 2aji_A
Length = 196
Score = 191 bits (488), Expect = 2e-56
Identities = 66/209 (31%), Positives = 103/209 (49%), Gaps = 17/209 (8%)
Query: 222 LMQVNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPL 281
+ + +G+ + F + D + L ++TTR D G T+ ++ HPL
Sbjct: 1 MHHHHHHAMGEGVEITFN--VND--------YDNTLTVYTTRPDTFMGCTYLAVAAGHPL 50
Query: 282 AIFAARNNLLLQKFILEYKKNNNIE--SNNLLKKSILTQLKVLHPLTNQEIKVFVVNYVI 339
A AA NN L FI E + E + KK + T K +HPLT +EI V+ N+V+
Sbjct: 51 AQKAAENNPELAAFIDECRNTKVAEAEMATMEKKGVDTGFKAVHPLTGEEIPVWAANFVL 110
Query: 340 EKSYGRAAI-GVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCIN 398
YG A+ VP H++ D+ FA K+ L IK VI + S D + + +K N
Sbjct: 111 -MEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPD-LSQQALTEKGV--LFN 166
Query: 399 SCKYNNMSHKEATNAISTDLIKLGLGNKK 427
S ++N + H+ A NAI+ L +G+G +K
Sbjct: 167 SGEFNGLDHEAAFNAIADKLTAMGVGERK 195
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase,
aminoacyl-tRNA synthetase, ATP-binding, nucleotide-
protein biosynthesis; 1.77A {Aquifex aeolicus} PDB:
3pz0_A 3pz5_A
Length = 219
Score = 133 bits (336), Expect = 2e-35
Identities = 62/225 (27%), Positives = 103/225 (45%), Gaps = 27/225 (12%)
Query: 229 GKSKGIFLAFP-----------HNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISP 277
G+S+G + F ++ + + + +FTTR D ++G TF V++P
Sbjct: 1 GRSEGALIRFYVEIEEPEKFLNCVPEELKETLLKEKRIYIDVFTTRPDTVFGATFVVLAP 60
Query: 278 EHPLAIFAARNNLL--------LQKFILEYKKNNNIE-SNNLLKKSILTQLKVLHPLTNQ 328
EHPL A ++ F+ + KK + E + K+ + + +P +
Sbjct: 61 EHPLVPVLACIGERLGNACYSDVENFVEKMKKMSTRERTMEEDKEGVFLGVYATNPANGE 120
Query: 329 EIKVFVVNYVIEKSYGRAAI-GVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDW 387
+I V+ NYV+ YG AI VPAH++ D+ FAKK+ L IK V+ + + K
Sbjct: 121 KIPVWSANYVL-YEYGTGAIMCVPAHDQRDWEFAKKYDLPIKVVVKPEG---AWDFEKGA 176
Query: 388 YIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNKKNIFRL 432
Y K +NS ++ + + A I+ L GLG KK +RL
Sbjct: 177 YEGK--GTLVNSDGFDGLDSETAKRKITEWLQDRGLGEKKVSYRL 219
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Length = 821
Score = 102 bits (256), Expect = 2e-22
Identities = 42/199 (21%), Positives = 70/199 (35%), Gaps = 44/199 (22%)
Query: 3 KKYNFVEIEKITQCYWNKINAYQT----TENDTRF-----PNGKFYTCSMLPYPSGKLHM 53
+ NF ++E+ +W + +Q + R+ P P +G H+
Sbjct: 6 GEPNFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGP----------PTANGLPHV 55
Query: 54 GHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAI--LNNTSPAK--------- 102
GH + + D+ RY M GY GWD G+P E L S +
Sbjct: 56 GHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERF 115
Query: 103 --------WTYDNVSYMKKQLSSLGLAIDWSREIITCSPKY--YKWNQWIFLKMFKRGII 152
+TY + + +D T P Y W W +F RG++
Sbjct: 116 NQACRESVFTY--EKEWEAFTERIAYWVDLEDAYATLEPTYIESIW--WSLKNLFDRGLL 171
Query: 153 YKKTGIVNWDPIEKTVLAN 171
Y+ +V + P T L++
Sbjct: 172 YRDHKVVPYCPRCGTPLSS 190
Score = 78.4 bits (194), Expect = 6e-15
Identities = 47/231 (20%), Positives = 91/231 (39%), Gaps = 37/231 (16%)
Query: 635 KMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYR-FLNRVWN-F 692
KMSKSK N +DP I +GAD+ R +I SAPPE + + + R + +WN +
Sbjct: 591 KMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTLWNVY 650
Query: 693 SYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRR----KIHKILQQINRDIKRIQYNTV 748
S+ + N+ D + R ++ ++Q++ ++ T
Sbjct: 651 SFFV-------TYANLDRPDLKNPPPPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTS 703
Query: 749 VSGCMKIFNILE------RINSE----TKFDNNK----NTNNDILLYEGMSIFLRVLNPI 794
F + + R N + ++ T LYE + + + P
Sbjct: 704 ARALRD-FVVEDLSQWYVRRNRRRFWKNEDALDREAAYAT-----LYEALVLVATLAAPF 757
Query: 795 APHITHILWKELKYSIQQGD---ILNACWPKIDSLALEEEKEE-VKLIIQI 841
P + +LW+ L S++ + A WP+ D +E ++ ++++
Sbjct: 758 TPFLAEVLWQNLVRSVRLEAKESVHLADWPEADPALADEALVAQMRAVLKV 808
Score = 70.7 bits (174), Expect = 1e-12
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 433 RDWAISRQRYWGTPIPIIYCDSCGSVPVP------EKDLPVILPETCVPNNLLKENKKFL 486
DWA+SR RYWGTP+PI C +CG + LPE P + + +
Sbjct: 442 VDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPE---PFDPHRPYVDQV 498
Query: 487 HVSCPKCNKLAFRETDTMDTFVDS 510
++C C R +D + DS
Sbjct: 499 ELACA-CGGTMRRVPYVIDVWYDS 521
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 99.2 bits (248), Expect = 2e-21
Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 26/194 (13%)
Query: 1 MQKKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYP--SGKLHMGHVRN 58
+ K Y+ +E W K N + + P + +P P +G LHMGH +
Sbjct: 3 LPKAYDPKSVEPKWAEKWAK-NPFVANPKSGKPP----FVI-FMPPPNVTGSLHMGHALD 56
Query: 59 YTINDVMYRYMRMNGYNVL-MPMGWDAFGMPAENA--AILNNTSPAK------------- 102
++ D + RY RM G+ + +P G D G+ + +L +
Sbjct: 57 NSLQDALIRYKRMRGFEAVWLP-GTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVW 115
Query: 103 -WTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNW 161
W ++ + KQL LG + DWSRE T K + ++ F + + G+ Y+ +VNW
Sbjct: 116 QWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNW 175
Query: 162 DPIEKTVLANEQVI 175
P +T L++ +V
Sbjct: 176 CPRCETTLSDLEVE 189
Score = 78.0 bits (193), Expect = 7e-15
Identities = 47/234 (20%), Positives = 99/234 (42%), Gaps = 35/234 (14%)
Query: 617 IHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSD 676
+H ++ LD+K G +KMSKSK N IDP + YGAD+ R +I+ A +++
Sbjct: 517 LHGLV-LDEK-----G-QKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDL 569
Query: 677 IGIEGAYRFLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQI 736
+E A F N+++N A R + +++ F + + R ++ + +++I
Sbjct: 570 RWLEMARNFANKLYN-----AARFV-LLSREGFQAKEDTPTLAD--RFMRSRLSRGVEEI 621
Query: 737 NRDIKRIQYNTVVSGCMKIFNI---------LERINSETKFDNNKNTNNDILLYEGMSIF 787
+ + +++ + LE ++ L +++
Sbjct: 622 TALYEALDLAQA---AREVYELVWSEFCDWYLEA--AKPALKAGNAHTLRTLEE-VLAVL 675
Query: 788 LRVLNPIAPHITHILWKELKYSIQQGDILNACWPKIDSL--ALEEEKEEVKLII 839
L++L+P+ P +T L++ L + ++ WP+ E E +K +
Sbjct: 676 LKLLHPMMPFLTSELYQALT---GKEELALEAWPEPGGRDEEAERAFEALKQAV 726
Score = 67.2 bits (165), Expect = 2e-11
Identities = 54/242 (22%), Positives = 83/242 (34%), Gaps = 72/242 (29%)
Query: 320 KVLHPLTNQEIKVFVVNYVIEKSYGRAAIGV-PAHNKHDFYFAKKHSLLIKQVINVKNK- 377
+ PLT I + V EK +G A+ V PAH+ D+ ++H L + ++V N
Sbjct: 242 RARIPLTEVWIPILADPAV-EKDFGTGALKVTPAHDPLDYEIGERHGL---KPVSVINLE 297
Query: 378 ----------SYS--------DKIWKDW----YIDKENCYCIN-----SCK--------- 401
+ K + + ++ KE Y I C
Sbjct: 298 GRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFP 357
Query: 402 --YNNMSH--KEATNAISTDLIKLGLGNKKNIFR-----LRDWAISRQRYWGTPIPIIYC 452
+ M +E + I K + ++DW ISRQ +WG IP YC
Sbjct: 358 QWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYC 417
Query: 453 DSCGSVPVPEKDLPVILPETCVPNNLLKENKKFLHVSCPKCNKLAF-RETDTMDT-FVDS 510
+ C +V VP + + P + C C R+ D DT F S
Sbjct: 418 EDCQAVNVPRPERYLEDPTS-----------------CEACGSPRLKRDEDVFDTWF--S 458
Query: 511 SW 512
S
Sbjct: 459 SA 460
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 93.6 bits (233), Expect = 8e-20
Identities = 54/223 (24%), Positives = 92/223 (41%), Gaps = 36/223 (16%)
Query: 37 KFYTCSMLPYPSGKLHMGHVRNYTIN-DVMYRYMRMNGYNVLMPMGWDAFGMPAENAAIL 95
++ S LPY +G +H GH+ + D+ RY+R+ G +V+ G D G P A+
Sbjct: 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALK 62
Query: 96 NNTSPAKWTYDNVSYMKKQLSSLGLAID-WSREIITCSPKYYKWNQWIFLKMFKRGIIYK 154
SP + + +K ++ D + R T P +YK +Q FLK ++ G + K
Sbjct: 63 EGRSPREIVDEFHEQIKITFQRAKISFDFFGR---TELPIHYKLSQEFFLKAYENGHLVK 119
Query: 155 KTGIVNWDPIEKTVLAN-----------------------------EQVINGRGWRSDAI 185
K + +K L + E +IN R
Sbjct: 120 KVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVCGRPLTPEILINPRCAICGRP 179
Query: 186 IEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWI 228
I + YY K+ ++AE L +++K+ W V+ M ++WI
Sbjct: 180 ISFRDSAHYYIKMQDFAERLKRWIEKQ--PWKPNVKNMVLSWI 220
Score = 42.0 bits (99), Expect = 9e-04
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 13/74 (17%)
Query: 634 EKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEK--NLEWSDIGIEGAYRFLNRVWN 691
+K S S+N I ++ + AD R ++ P + + +SD F R+ N
Sbjct: 343 KKFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFSD--------FKVRI-N 393
Query: 692 FSYILAPRIINIIN 705
L + N ++
Sbjct: 394 --EELVNNLGNFVH 405
Score = 33.9 bits (78), Expect = 0.30
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 432 LRDWAISRQRYWGTPIPIIYCDSCGSV 458
L + AI+R WG P+P+ D G V
Sbjct: 224 LEERAITRDLNWGIPVPLDEEDMKGKV 250
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs,
parasite, protein-IN complex, translation, nucleotide
binding; HET: C13; 2.55A {Trypanosoma brucei}
Length = 542
Score = 80.4 bits (198), Expect = 8e-16
Identities = 47/235 (20%), Positives = 86/235 (36%), Gaps = 23/235 (9%)
Query: 37 KFYTCSMLPYPSGKLHMGHVRNYT--INDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAI 94
F+ S + Y + H+GHV Y+ I DV+ RY R+ G V G D G AA
Sbjct: 10 VFFVTSPIYYVNAAPHIGHV--YSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAK 67
Query: 95 LNNTSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYK 154
SP +T KK + +ID I T + ++ + ++ K+ ++G IY
Sbjct: 68 QKQVSPYDFTTAVAGEFKKXFEQMDYSID--YFIRTTNEQHKAVVKELWTKLEQKGDIYL 125
Query: 155 KTGIVNWDPIEKTVLANEQVINGRGWRSDAI---------IEKKKIPMYYAKITNYAEEL 205
+ +++ L + + +G + + Y +++ + E L
Sbjct: 126 GRYEGWYSISDESFLTPQNITDGVDKDGNPCKVSLESGHVVTWVSEENYMFRLSAFRERL 185
Query: 206 LEYVKKKLPY-WPKKVRLMQVNWIGK-------SKGIFLAFPHNIKDPNKNNKLI 252
LE+ P+ R + + K S+ I P + +
Sbjct: 186 LEWYHANPGCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGNPDHXV 240
Score = 39.2 bits (91), Expect = 0.005
Identities = 30/184 (16%), Positives = 68/184 (36%), Gaps = 19/184 (10%)
Query: 634 EKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRF--LNRVWN 691
+K+SKS N DP + +G D+ + F++ + + ++SD + + + N
Sbjct: 322 KKISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGN 381
Query: 692 FSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSG 751
L R + N+ S + + + I + +
Sbjct: 382 ----LVMRCTSAKI-NVNGEWPSPAAYTEEDESLIQLIKDLPGTADHYYLIPDIQ---KA 433
Query: 752 CMKIFNILERIN---SETK----FDNNKNTNNDIL--LYEGMSIFLRVLNPIAPHITHIL 802
+ +F++L IN ++ + +L EG+ + +L+PI P + ++
Sbjct: 434 IIAVFDVLRAINAYVTDMAPWKLVKTDPERLRTVLYITLEGVRVTTLLLSPILPRKSVVI 493
Query: 803 WKEL 806
+ L
Sbjct: 494 FDML 497
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing
tRNA synthetase, double-sieve, ligase/RNA, mupiroci;
HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Length = 917
Score = 77.6 bits (192), Expect = 1e-14
Identities = 122/626 (19%), Positives = 190/626 (30%), Gaps = 236/626 (37%)
Query: 11 EKITQCYWNKINAYQ----TTENDTRF-----PNGKFYTCSMLPYPSGKLHMGHVRNYTI 61
E Q W+ + Y + + F P PY +G LHMGH N +
Sbjct: 24 EPQIQEKWDAEDQYHKALEKNKGNETFILHDGP----------PYANGNLHMGHALNKIL 73
Query: 62 NDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAI-----LNNTSPA-------KWTYDNVS 109
D + RY M G+ GWD G+P E A S A ++ + +
Sbjct: 74 KDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQIE 133
Query: 110 YMKKQLSSLGLAIDWSREIITCSPKY----YKWNQWIFLKMFKRGIIYKKTGIVNWDPIE 165
KK LG+ D++ IT P+Y + IF +M +G+IYK V W P
Sbjct: 134 LQKKDFRRLGVRGDFNDPYITLKPEYEAAQIR----IFGEMADKGLIYKGKKPVYWSPSS 189
Query: 166 KTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQV 225
++ LA E AE +EY K
Sbjct: 190 ESSLA-E-----------------------------AE--IEYHDK-------------- 203
Query: 226 NWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTT-------------RIDIIYGITF 272
+S I++AF +KD + + K I+TT ++ YG
Sbjct: 204 ----RSASIYVAFN--VKDDKG--VVDADAKFIIWTTTPWTIPSNVAITVHPELKYG--- 252
Query: 273 CVISPEHPLAIFAARNNLLLQKFILEYK-KNNNIESNNLLKKSILTQLKVLHPLTNQEIK 331
+ I A L +I+ L + HP ++E
Sbjct: 253 -QYNVNGEKYIIAEA---LSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHPFLDRESL 308
Query: 332 VFVVNYVIEKSYGRAAIG---V---PAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWK 385
V ++V + G V P H + D+ +++ L VI+
Sbjct: 309 VINGDHVTTDA------GTGCVHTAPGHGEDDYIVGQQYEL---PVISP----------- 348
Query: 386 DWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLG--LGNK------------KN--I 429
ID + + ++ M + +A A++ L + G L K I
Sbjct: 349 ---IDDKGVFTEEGGQFEGMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVI 405
Query: 430 FR-----------LRD--------------WAISR---------------QRYWGTPIPI 449
FR +R W +R QR WG P+P+
Sbjct: 406 FRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPV 465
Query: 450 IYCDSCGSVPVPE-------------------KDLPVILPETCVPNNLLKENKKFLHVSC 490
Y ++ + E ++ +LPE
Sbjct: 466 FYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFT---------------H 510
Query: 491 PKCNKLAFR-ETDTMDTFVDS--SWY 513
P F ETD MD + DS S
Sbjct: 511 PGSPNGTFTKETDIMDVWFDSGSSHR 536
Score = 49.1 bits (118), Expect = 6e-06
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 634 EKMSKSKNNGIDPQTQINTYGADSTRL 660
+KMSKS N I P + GAD RL
Sbjct: 594 KKMSKSLGNVIVPDQVVKQKGADIARL 620
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus}
PDB: 2ct8_A*
Length = 497
Score = 76.5 bits (189), Expect = 1e-14
Identities = 47/179 (26%), Positives = 73/179 (40%), Gaps = 9/179 (5%)
Query: 37 KFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILN 96
KFY + + Y + H+GH D + RY R+ Y+V G D G+ + A
Sbjct: 6 KFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEEL 65
Query: 97 NTSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKT 156
SP + N KK L + + I T P + K+ Q +F + +KRG IY
Sbjct: 66 GISPKELVDRNAERFKKLWEFLKIEYT--KFIRTTDPYHVKFVQKVFEECYKRGDIYLGE 123
Query: 157 --GIVNW--DPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKK 211
G W E+ E + E K P Y+ +++ Y ++LLE +K
Sbjct: 124 YEG---WYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEK 179
Score = 49.5 bits (119), Expect = 4e-06
Identities = 37/212 (17%), Positives = 74/212 (34%), Gaps = 48/212 (22%)
Query: 634 EKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFLNRVWNFS 693
+KMSK+ N +DP + YG D R F++ P G +G +FS
Sbjct: 294 KKMSKTLGNVVDPYEVVQEYGLDEVRYFLLREVP---------FGQDG---------DFS 335
Query: 694 YILAPRIINIINL-------NIFHNDFSVIKFNNNQKV-------FRRKIHKILQQINRD 739
I+N IN N++ ++ +V + + + ++
Sbjct: 336 K---KAILNRINGELANEIGNLYSRVVNMAHKFLGGEVSGARDEEYAKIAQESIKNYENY 392
Query: 740 IKRIQYNTVVSGCMKIFNILERIN---SETK-FDNNKNTNNDIL---LY---EGMSIFLR 789
++++ + +I +N E + + NK + L LY +G+ +
Sbjct: 393 MEKVNFY---KAIEEILKFTSYLNKYVDEKQPWALNKERKKEELQKVLYALVDGLFVLTH 449
Query: 790 VLNPIAPHITHILWKELKYSIQQGDILNACWP 821
+L PI P+ + L ++
Sbjct: 450 LLYPITPNKMKEALQMLGEKEFLKELKPYSKN 481
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA
synthetase, ATP-binding, ligas binding,
nucleotide-binding, protein biosynthesis; HET: CIT;
1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A
3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A*
1pg2_A* 1qqt_A 1mea_A 1med_A
Length = 560
Score = 75.7 bits (187), Expect = 2e-14
Identities = 37/217 (17%), Positives = 77/217 (35%), Gaps = 35/217 (16%)
Query: 42 SMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPA 101
PY +G +H+GH+ + DV RY RM G+ V DA G P A +P
Sbjct: 24 CASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPE 83
Query: 102 KWTYDNVSYMKKQLSSLGLAID-WSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVN 160
+ + + + ++ D + T S + + ++ I+ ++ + G I +T
Sbjct: 84 QMIGEMSQEHQTDFAGFNISYDNYHS---THSEENRQLSELIYSRLKENGFIKNRTISQL 140
Query: 161 WDPIEKTVLAN-----------------------------EQVINGRGWRSDAIIEKKKI 191
+DP + L + ++I + S A +
Sbjct: 141 YDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGATPVMRDS 200
Query: 192 PMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWI 228
++ + +++E L + + ++V W
Sbjct: 201 EHFFFDLPSFSEMLQAWTRSG--ALQEQVANKMQEWF 235
Score = 42.6 bits (101), Expect = 5e-04
Identities = 39/232 (16%), Positives = 72/232 (31%), Gaps = 44/232 (18%)
Query: 634 EKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEK---NLEWSDIGIEGAYRFLNRVW 690
KMSKS+ I T +N + ADS R + +L D F+ RV
Sbjct: 344 AKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLED--------FVQRVN 395
Query: 691 NFSYILAPRIINIIN--LNIFHNDF-SVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNT 747
+ +++N+ + + F V+ + + I + ++
Sbjct: 396 A---DIVNKVVNLASRNAGFINKRFDGVLASELADPQLYKTFTDAAEVIGEAWESREFG- 451
Query: 748 VVSGCMKIFNILERIN---------SETKFDNNKNTNNDILLYEGMSIF---LRVLNPIA 795
+I + + N K + I G+++F + L P+
Sbjct: 452 --KAVREIMALADLANRYVDEQAPWVVAKQEGRDADLQAI-CSMGINLFRVLMTYLKPVL 508
Query: 796 PHITHILWKELKYSIQQGDI--------LNACWP---KIDSLALEEEKEEVK 836
P +T L + I +N +ID +E E K
Sbjct: 509 PKLTERAEAFLNTELTWDGIQQPLLGHKVNPFKALYNRIDMRQVEALVEASK 560
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase,
structural genomics, NPPSFA; 1.80A {Thermus
thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A
2d54_A
Length = 500
Score = 74.6 bits (184), Expect = 5e-14
Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 8/178 (4%)
Query: 37 KFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILN 96
FY + + Y + + H+GH + D + R+ R++GY G D G AA
Sbjct: 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAA 63
Query: 97 NTSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKT 156
P + D VS K+ L L I + I T ++ K Q + K+++ G IY
Sbjct: 64 GEDPKAFV-DRVSGRFKRAWDL-LGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGE 121
Query: 157 --GIVNW-DPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKK 211
G + ++++ G +E++K Y+ ++ Y L EY+++
Sbjct: 122 YEG---LYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQE 176
Score = 45.7 bits (109), Expect = 5e-05
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 634 EKMSKSKNNGIDPQTQINTYGADSTRLFII 663
KMSK+ N +DP + YG D+ R +++
Sbjct: 296 RKMSKTLGNVVDPFALLEKYGRDALRYYLL 325
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein
biosynthesis, ligase, aminoacyl- synthetase; HET: ADN
CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Length = 524
Score = 73.4 bits (181), Expect = 1e-13
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 2/129 (1%)
Query: 26 TTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAF 85
+ + FY + + YP+G H+GH Y D + R+ R++GY+V G D
Sbjct: 2 AHHHHHHGGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVH 61
Query: 86 GMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLK 145
G A A+ N ++ L ++ D R I T +Y+ ++ I+ +
Sbjct: 62 GQKMAETAAKEGIPAAELARRNSDVFQRLQEKLNISFD--RFIRTSDADHYEASKAIWKR 119
Query: 146 MFKRGIIYK 154
M G IY
Sbjct: 120 MADAGDIYL 128
Score = 47.6 bits (114), Expect = 1e-05
Identities = 41/200 (20%), Positives = 75/200 (37%), Gaps = 22/200 (11%)
Query: 634 EKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRF--LNRVWN 691
EKMSKS N +DP ++T+G D R F++ P ++ +++ I G N + N
Sbjct: 309 EKMSKSIGNVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGN 368
Query: 692 FSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQYNTVVSG 751
LA R ++++ N+ +F + +L+++ +
Sbjct: 369 ----LAQRSLSMVAKNLGAAVPDPGEFTDEDTALLAAADALLERVREHFDVPAMH---LA 421
Query: 752 CMKIFNILERIN---SET------KFDNNKNTN--NDIL--LYEGMSIFLRVLNPIAPHI 798
I+++L N S K D ++ +L E + I +L P+ P
Sbjct: 422 LEAIWSVLGAANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPES 481
Query: 799 THILWKELKYSIQQGDILNA 818
T L L + D
Sbjct: 482 TAKLLDLLGQPTDERDFSAI 501
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class
IA:methionyl-tRNA...; structural genomics; 2.65A
{Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Length = 536
Score = 73.1 bits (180), Expect = 2e-13
Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 35 NGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAI 94
K+Y + + YP+GK H+GH D M R+ R+NG +V G D G+ +A
Sbjct: 24 REKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSAR 83
Query: 95 LNNTSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYK 154
+P N S ++ L + D I T ++YK +Q I+ M G IYK
Sbjct: 84 KEGITPRDLADRNTSAFRRMAEVLNSSND--DYIRTSEERHYKASQAIWQAMVANGDIYK 141
Query: 155 KT 156
Sbjct: 142 GG 143
Score = 52.7 bits (127), Expect = 4e-07
Identities = 42/232 (18%), Positives = 70/232 (30%), Gaps = 47/232 (20%)
Query: 634 EKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAY---RFLNRV- 689
EKMSKS N IDP + YG D R F++ P G +G+Y +NR
Sbjct: 320 EKMSKSVGNVIDPFELVERYGLDQLRYFLMREVP---------FGQDGSYSHEAIVNRTN 370
Query: 690 -------WNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKR 742
N LA R +++I N F+ K + L+ + +
Sbjct: 371 ADLANDLGN----LAQRSLSMIAKNCEGKVPQPGAFSEADKAILDQADAALETARKAMDD 426
Query: 743 IQYNTVVSGCMKIFNILERIN---SETK----FDNNKNTNNDIL--LYEGMSIFLRVLNP 793
+ IF ++ N + + + +L E + ++ P
Sbjct: 427 QALH---LALGAIFAVVAEANRYFAGQEPWALRKTDPARMGTVLYVTAEVLRRVGIMVQP 483
Query: 794 IAPHITHILWKELKYSIQQGDILNACW---------PKIDSL--ALEEEKEE 834
P L L + + P + E E+
Sbjct: 484 FIPQSAEKLLDILAVPADKRQFADVLASPLAGGTDLPAPQPVFPRYVEADEQ 535
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase,
tRNA ligase metrs, methionine, translation, ATP-binding;
HET: ME8; 2.00A {Leishmania major}
Length = 564
Score = 71.6 bits (176), Expect = 6e-13
Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 2/130 (1%)
Query: 25 QTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDA 84
QT + F+ + + Y + H+GHV + I DV+ RY R+ G V + G D
Sbjct: 15 QTQGPGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDE 74
Query: 85 FGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFL 144
G AA SP +T +VS KQ + D + I T +P + K Q I+
Sbjct: 75 HGQKVAEAAAKQGVSPMDFT-TSVSSEFKQCFQE-MNYDMNYFIRTTNPTHEKLVQDIWK 132
Query: 145 KMFKRGIIYK 154
K+ +G IY
Sbjct: 133 KLAAKGDIYL 142
Score = 45.7 bits (109), Expect = 5e-05
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 634 EKMSKSKNNGIDPQTQINTYGADSTRLFII 663
+K+SKS N DP + +G D+ + F++
Sbjct: 338 KKISKSLGNAFDPVEKAKEFGIDALKYFLM 367
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.9 bits (157), Expect = 9e-11
Identities = 80/529 (15%), Positives = 148/529 (27%), Gaps = 180/529 (34%)
Query: 102 KWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMF-KRGIIYK--KTGI 158
K+ + ++Q S + +R I + Y NQ +F K R Y + +
Sbjct: 92 KFLMSPIKTEQRQPSMM------TRMYIEQRDRLYNDNQ-VFAKYNVSRLQPYLKLRQAL 144
Query: 159 VNWDPIE-----------KTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNY--AEEL 205
+ P + KT +A + S + K +++ + N E +
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVC------LSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 206 LEYVKK----------KLPYWPKKVRLMQVNWIGKSKGIFLAFPHNIKDPNKNNKLI--- 252
LE ++K ++L + + + + + P+ +N L+
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY------ENCLLVLLN 252
Query: 253 -QNGKLW---------IFTTR----IDIIYGITFCVISPEHP---------LAIF----- 284
QN K W + TTR D + T IS +H ++
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 285 ---------AARNNLLLQKFILEYKKNNNIESNNL-------LKKSILTQLKVLHPLTNQ 328
N I E ++ +N L I + L VL P +
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 329 E----IKVF---------------------VVNYVIEKSYGRAAIGVPAHNK------HD 357
+ + VF V V+ K + + V K
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL--VEKQPKESTISIPS 430
Query: 358 FYFAKK---------HSLLIKQVINVKNKSYSD--KIWKDWYIDKENCYCINSCKYNNMS 406
Y K H ++ K D + D Y Y+++
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF------------YSHIG 478
Query: 407 HKEATNAISTDLIKLGLGNKKNIFR-----LRDWAISRQRYWGTPIPIIYCDSCGSVPVP 461
H L + + +FR R + + R+ T ++ GS+
Sbjct: 479 HH---------LKNIEHPERMTLFRMVFLDFR-FLEQKIRHDSTA-----WNASGSILNT 523
Query: 462 EKDL----PVILPETCVPNNLLKENKKFLH------VSCPKCN--KLAF 498
+ L P I L+ FL + + ++A
Sbjct: 524 LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572
Score = 38.7 bits (89), Expect = 0.011
Identities = 72/588 (12%), Positives = 163/588 (27%), Gaps = 201/588 (34%)
Query: 294 KFILEYKKN--NNIESNNLLK-KSILTQLKVLHP--LTNQE--IKVFVVNYVIEKSYGRA 346
K + + K+ + E ++++ K ++ L L+ QE ++ FV V+ +Y
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE-VLRINY--- 91
Query: 347 AIGVPAHNKHDFYFAKKHSLLIKQVINVKN-KSYSDKIWKDWYIDKENCYCINSCKYNNM 405
F + + + + + D+++ D + KYN +
Sbjct: 92 ----------KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA---------KYN-V 131
Query: 406 SHKEATNAISTDLIKL------------GLGNKKNIF---RLRDWAISRQR----YWGTP 446
S + + L++L G G K + + + +W
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSG--KTWVALDVCLSYKVQCKMDFKIFW--- 186
Query: 447 IPIIYCDSCGSVPVPEKDLPVIL-PETC----------VPNNLLKENKKFLHVSCPKCNK 495
+ + C+S +V + L + P + + ++ + L S P N
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 496 L-------------AF----------RETDTMDTFVDSSWYYMRYISPKLENFMIDDNK- 531
L AF R D F+ ++ + D+ K
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD-FLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 532 --INY-WMPVD-----------QYIGGIEHAILHLLYAR--FWTKLMYNLGLIKFNEPFI 575
+ Y + + I + A W + + L E +
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIA-ESIRDGLATWDNWKHVNCD-KLTTIIESSL 363
Query: 576 RLLTQGMILNKTYYRIENSSNKKRWYN-----PDDVKIT--------------------- 609
+L + ++ ++ P I
Sbjct: 364 NVL--------------EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 610 -------LDKKNKP----IHAI-----LKLDKKPV----IIGGIEKMSKSKNNGIDPQTQ 649
++K+ K I +I +KL+ + I+ ++ + P
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP-Y 468
Query: 650 INTY----------GADSTRLFIIFSAPPEK--NLEWSDIGIEGAYRFLNRVWNFSYILA 697
++ Y + +F + + +E R + WN S +
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLF---RMVFLDFRF----LEQKIRHDSTAWNASGSIL 521
Query: 698 PRIINIINLN--IFHND-------FSVIKF--NNNQKVFRRKIHKILQ 734
+ + I ND +++ F + + K +L+
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569
Score = 30.6 bits (68), Expect = 2.8
Identities = 29/223 (13%), Positives = 58/223 (26%), Gaps = 66/223 (29%)
Query: 74 YNVLMPMG----WDAFGMPAENAAILNNTSPAK-----W---TYDNVSYMKKQLSSLGLA 121
NVL P +D + +A I P W +V + +L L
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHI-----PTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 122 IDWS-------------------------REIITCSPKYYKWNQWIFLKMFKRGIIYKKT 156
R I+ ++ + + Y
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 157 G------------------IVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKI 198
G +++ +E+ + + N G + + + K Y
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537
Query: 199 TNYAEELLEYVKKKLP------YWPKKVRLMQVNWIGKSKGIF 235
E L+ + LP K L+++ + + + IF
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase;
2.60A {Giardia intestinalis}
Length = 311
Score = 55.5 bits (133), Expect = 3e-08
Identities = 39/293 (13%), Positives = 80/293 (27%), Gaps = 62/293 (21%)
Query: 188 KKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIGKSKG--IFLAFPHNIKDP 245
K ++ Y + E+ E ++ + + F ++
Sbjct: 15 KLELINYTTLLEEQREQQQEGEEEGDGMDDSLAEKLNIKLPRFYSNPKNKAIFDQLWENQ 74
Query: 246 NKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIF------------AARNNLLLQ 293
N K+ L T R + + G T C + P + A N+ Q
Sbjct: 75 VDNAKVY----LLAATLRPETMVGQTNCWVLPTGRYGAYYINKDEVIIVSEHAAVNMAHQ 130
Query: 294 KFILEYKKNNNIESNNLLKKSILTQLKVLHPLTNQE-IKVFVVNYVIEKSYGRAAI-GVP 351
K ++ + + S L V PL+ E I V + + G + VP
Sbjct: 131 GLNNN-KPFGELDFISEISGSDLLLATVRAPLSPYEQIFVLPLETIKM-DKGTGIVTSVP 188
Query: 352 AHNKHDF-----------YFAKKHSLLIKQVIN-------VKNKSYSDKIWKDWYID--- 390
+ D+ A+K+ + + ++ ++ +
Sbjct: 189 SDAPDDYACYKDILENRNGIAEKYGVDVGLMLEPYSPLPIIEIPDIGTLSAVRLCEESNV 248
Query: 391 ------------KENCY-------CINSCKYNNMSHKEATNAISTDLIKLGLG 424
KE CY + + S K+ + L++
Sbjct: 249 SSLHDRAKLTQIKEICYTKGFYTGIMKMGPFAGQSVKDCKQSCRDLLVQNNQC 301
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA
inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA
synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium
smegmatis}
Length = 414
Score = 43.8 bits (104), Expect = 2e-04
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 34 PNGK--FYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNV 76
P Y C + PY H+GH Y D+++R G+ V
Sbjct: 36 PGPTATMYVCGITPY--DATHLGHAATYLTFDLVHRLWLDAGHTV 78
Score = 33.4 bits (77), Expect = 0.31
Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 21/75 (28%)
Query: 628 VIIGGIEKMSKSKNN----------GIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDI 677
+ G KMSKS+ N G+DP RL + S ++ WS+
Sbjct: 285 IGWDG-HKMSKSRGNLVLVSQLRAQGVDPSA---------IRLGLF-SGHYREDRFWSNE 333
Query: 678 GIEGAYRFLNRVWNF 692
++ A L R +
Sbjct: 334 VLDEANARLARWRSA 348
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase,
phosphoprotein, editing domain, nucleotide-binding,
hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Length = 252
Score = 41.5 bits (97), Expect = 6e-04
Identities = 35/185 (18%), Positives = 60/185 (32%), Gaps = 26/185 (14%)
Query: 242 IKDPNKNNKLIQNGK---LWIFTTRIDIIYGITFCVISPEHPLAIFAARN---------- 288
+ +P + GK L T R + ++G T C + P+ F N
Sbjct: 14 VLEPYPSKLSGLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETVNGDIFICTQKA 73
Query: 289 --NLLLQKFILEYKKNNNIESNNLLKKSILTQLKVLHPLTNQE-IKVFVVNYVIEKSYGR 345
N+ Q F + ++ L + + PLT+ + I V + + E
Sbjct: 74 ARNMSYQGFTKDNGVVPVVKE---LMGEEILGASLSAPLTSYKVIYVLPMLTIKEDKGTG 130
Query: 346 AAIGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNM 405
VP+ + D + L KQ + K I D + E I + N+
Sbjct: 131 VVTSVPSDSPDDIAALRD--LKKKQALRAK-----YGIRDDMVLPFEPVPVIEIPGFGNL 183
Query: 406 SHKEA 410
S
Sbjct: 184 SAVTI 188
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus,
translation, amino acid, structural genomics; 1.70A
{Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Length = 147
Score = 39.8 bits (94), Expect = 7e-04
Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 17/105 (16%)
Query: 320 KVLHPLTNQEIKVFVVNYVIEKSYGRAAIGV-PAHNKHDFYFAKKHSLLIKQVINVKNKS 378
+ PLT I + V EK +G A+ V PAH+ D+ ++H L + ++V N
Sbjct: 51 RARIPLTEVWIPILADPAV-EKDFGTGALKVTPAHDPLDYEIGERHGL---KPVSVIN-- 104
Query: 379 YSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGL 423
+ ++ E + EA + G
Sbjct: 105 ------LEGRMEGERV----PEALRGLDRFEARRKAVELFREAGH 139
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia
burgdorferi}
Length = 501
Score = 39.1 bits (92), Expect = 0.006
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 37 KFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNV 76
K Y C Y H+G+ R Y D++ + +R GY V
Sbjct: 44 KVYACGPTVY--NYAHIGNFRTYIFGDLLIKTLRFLGYKV 81
Score = 32.6 bits (75), Expect = 0.55
Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 628 VIIGGIEKMSKSKNNGIDPQTQIN-TYGADSTRLFIIFSAPPEKNLEWSDIGIEGAYRFL 686
+I+ KMSKS+ N I + + + R + ++ L++S ++ +
Sbjct: 293 LIMDY-NKMSKSRGNFITVKDLEDQNFSPLDFRYLCL-TSHYRNQLKFSLDNLQASKIAR 350
Query: 687 NRVWN 691
+ N
Sbjct: 351 ENLIN 355
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine,
E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1
c.26.1.1 PDB: 1li7_A 1u0b_B
Length = 461
Score = 38.3 bits (90), Expect = 0.011
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 37 KFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNV 76
Y C + Y H+GH R + DV+ RY+R GY +
Sbjct: 24 GMYVCGITVY--DLCHIGHGRTFVAFDVVARYLRFLGYKL 61
Score = 35.6 bits (83), Expect = 0.070
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 628 VIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFS---APPEKNLEWSDIGIEGAYR 684
V++ EKMSKS N + + Y A++ R F++ + L +S+ ++ A
Sbjct: 260 VMVDR-EKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQ----LNYSEENLKQARA 314
Query: 685 FLNRVWNF 692
L R++
Sbjct: 315 ALERLYTA 322
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase, nucleotide-binding, protein
biosynthesis, ligase/RNA complex; HET: ANP; 2.00A
{Pyrococcus horikoshii} PDB: 2zuf_A
Length = 629
Score = 38.5 bits (90), Expect = 0.011
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 47 PSGKLHMGHVRNYTINDVMYRYMRMNGYNVL 77
P+ LHMGH RN + DVM R +R GY V
Sbjct: 130 PTKPLHMGHARNAILGDVMARILRFLGYEVE 160
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics
initiative, RSGI, structural genomics, ligase; 2.30A
{Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Length = 592
Score = 38.1 bits (89), Expect = 0.014
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 47 PSGKLHMGHVRNYTINDVMYRYMRMNGYNVL 77
P+ +LH+GH+RN + D + R + G VL
Sbjct: 114 PNKELHVGHLRNIALGDAIARILAYAGREVL 144
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A
{Coxiella burnetii}
Length = 462
Score = 37.9 bits (89), Expect = 0.015
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 37 KFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNV 76
K Y C M Y +H+GH R++ I D++ RY+RM GY V
Sbjct: 27 KLYVCGMTVY--DYMHIGHGRSWIIFDMVVRYLRMRGYEV 64
Score = 36.0 bits (84), Expect = 0.053
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 628 VIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFS---APPEKNLEWSDIGIEGAYR 684
+ I EKMSKS N I + + + R F++ P L +S +E
Sbjct: 263 LEINK-EKMSKSLGNIISIREALKESDVEVLRYFLLSGHYRNP----LSYSKENLENGRL 317
Query: 685 FLNRVWN 691
L R +
Sbjct: 318 ALERFYL 324
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain,
hydrolysis of MIS-charged trnas, benzoxaborole,
anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB:
2wfe_A*
Length = 261
Score = 36.1 bits (83), Expect = 0.033
Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 19/138 (13%)
Query: 242 IKDPNKNNKLIQNGK---LWIFTTRIDIIYGITFCVISPEHPLAIFAARN---------- 288
++ K L L T R + +YG T C +SP+ +F A N
Sbjct: 17 AQELFKKESLDVKENKVYLVAATLRPETMYGQTCCFVSPKIDYGVFDAGNGDYFITTERA 76
Query: 289 --NLLLQKFILEYKKNNNIESNNLLKKSILTQLKVLHPL-TNQEIKVFVVNYVIEKSYGR 345
N+ Q + + + + L ++ P N+ ++V + V+
Sbjct: 77 FKNMSFQNLTPKRGYYKPLFT---INGKTLIGSRIDAPYAVNKNLRVLPMETVLATKGTG 133
Query: 346 AAIGVPAHNKHDFYFAKK 363
VP+ + DF +
Sbjct: 134 VVTCVPSDSPDDFVTTRD 151
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc
genomics, protein structure initiative; 2.20A
{Campylobacter jejuni}
Length = 464
Score = 36.4 bits (85), Expect = 0.043
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 47 PSGKLHMGHVRNYTINDVMYRYMRMNGYNV 76
P+G LH+GH R D + R R GY
Sbjct: 41 PTGPLHIGHARGAVFGDTLTRLARHLGYKF 70
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.046
Identities = 44/261 (16%), Positives = 80/261 (30%), Gaps = 75/261 (28%)
Query: 289 NLLLQKFILEYKKNNNIESNNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSY--GRA 346
NL L +F Y + N+I ++ +L L + + +I K+Y R
Sbjct: 85 NLCLTEFENCYLEGNDIH-------ALAAKL-----LQENDTTLVKTKELI-KNYITARI 131
Query: 347 AIGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIW-----KDWYIDKE--NCYCINS 399
P K + S L + V + + I+ D Y + E + Y
Sbjct: 132 MAKRPFDKKSN-------SALFRAVGEGNAQLVA--IFGGQGNTDDYFE-ELRDLYQT-- 179
Query: 400 CKYNNMSHKEATNAISTDLIKLGLGNKK------NIFRLRDWAISRQRYWGTPIPIIYCD 453
Y+ + + + L +L + +W + TP Y
Sbjct: 180 --YHVLV-GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN---TP-DKDYLL 232
Query: 454 SCGSVPVPEKDLPVI-LPE------TCV-----PNNLLKENKKFLHVSCPKCNK-----L 496
S P+ P+I + + T P L K ++ +
Sbjct: 233 SI---PI---SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK-----GATGHSQGLVTAV 281
Query: 497 AFRETDTMDTFVDSSWYYMRY 517
A ETD+ ++F S +
Sbjct: 282 AIAETDSWESFFVSVRKAITV 302
Score = 32.3 bits (73), Expect = 0.91
Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 18/93 (19%)
Query: 713 FSVIK-FNNNQKVFRRKIH---KILQQINRDIKRIQYNTVVSGCMKIFNILERINSETK- 767
FS++ NN IH + ++I + + + T+V G +K I + IN +
Sbjct: 1659 FSILDIVINNPV--NLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS 1716
Query: 768 --FDNNKN----TNND---ILLYEGMSIFLRVL 791
F + K T + L E + F L
Sbjct: 1717 YTFRSEKGLLSATQFTQPALTLME-KAAF-EDL 1747
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET:
PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A
{Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1
d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Length = 607
Score = 33.1 bits (76), Expect = 0.49
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 51 LHMGHVRNYTINDVMYRYMRMNGYNVL 77
H GH+R+ I + G+ V+
Sbjct: 158 FHAGHLRSTIIGGFLANLYEKLGWEVI 184
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus
jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A*
1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A
3n2y_A* 2hgz_A*
Length = 314
Score = 32.6 bits (75), Expect = 0.49
Identities = 13/31 (41%), Positives = 13/31 (41%), Gaps = 8/31 (25%)
Query: 623 LDKKPVII--------GGIEKMSKSKNNGID 645
L KK V I G KMS SK N I
Sbjct: 184 LPKKVVCIHNPVLTGLDGEGKMSSSKGNFIA 214
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus
radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Length = 351
Score = 31.0 bits (71), Expect = 1.7
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 622 KLDKKPVIIG--GIEKMSKSKNNGID 645
+L + P + G G KMSKS N I
Sbjct: 200 QLSRVPRLPGLDGQAKMSKSLGNAIA 225
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure,
rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus
horikoshii} SCOP: a.97.1.2 c.26.1.1
Length = 523
Score = 30.6 bits (68), Expect = 2.8
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 47 PSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAF 85
PSG +H+G+ R ++ +R GY V WD +
Sbjct: 30 PSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDY 68
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics,
medical structural GEN pathogenic protozoa, MSGPP,
ligase; 3.00A {Entamoeba histolytica}
Length = 386
Score = 29.6 bits (66), Expect = 4.2
Identities = 11/101 (10%), Positives = 29/101 (28%), Gaps = 13/101 (12%)
Query: 46 YPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTY 105
YP ++ + Y + V++ + D +LN +
Sbjct: 90 YPQKEVALEE---YITLEFARYLQDAFNIQVIIQILDD--------IKVLNREATINEAS 138
Query: 106 DNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKM 146
+ + K + + G + + I +Y+ +
Sbjct: 139 KMSNDLMKYILAFGF--NEDKTFIYTDYQYFGKMYRTISLV 177
>3rj1_B Mediator of RNA polymerase II transcription subun; RNA polymeras
II, POL II, head module, head, regulator, helical
bundle; 4.30A {Saccharomyces cerevisiae}
Length = 583
Score = 29.9 bits (66), Expect = 4.3
Identities = 10/68 (14%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 162 DPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVR 221
P +K + + + +GW+ ++ E K + + +L ++ + YW K ++
Sbjct: 166 APTKKEYIELDIL--NKGWKLQSLNESKDL------LRASFNKLSSILQNEHDYWNKIMQ 217
Query: 222 LMQVNWIG 229
+ +
Sbjct: 218 SISNKDVI 225
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 553
Score = 29.6 bits (67), Expect = 5.2
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 10/33 (30%)
Query: 31 TRFPNGKFYTCSMLPYPSGKLHMGHVRNYTIND 63
RF P PSG LH+GH R +N
Sbjct: 99 LRFA----------PNPSGPLHIGHARAAILNH 121
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 28.2 bits (62), Expect = 6.0
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 451 YCDSCGSVPVPEKDLPVILPETCVPNNLLKENKKFLHVSCPK--CNK 495
C +C + E+ + ++ + P+N + + L CP C
Sbjct: 68 NCAACVHEGIYEEGISILESSSAFPDNAARREVESLPAVCPSDGCTW 114
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.433
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,235,278
Number of extensions: 881256
Number of successful extensions: 2025
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1936
Number of HSP's successfully gapped: 93
Length of query: 893
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 791
Effective length of database: 3,853,851
Effective search space: 3048396141
Effective search space used: 3048396141
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.6 bits)