RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2890
(893 letters)
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 185 bits (469), Expect = 5e-51
Identities = 120/272 (44%), Positives = 169/272 (62%), Gaps = 15/272 (5%)
Query: 428 NIFRLRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPE-------TCVPNNLLK 480
I RLRDW ISRQRYWGTPIP+++C++CG VPVPE++LPV+LP+ + L+
Sbjct: 223 WIGRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLE 282
Query: 481 ENKKFLHVSCPKCNKLAFRETDTMDTFVDSSWYYMRYISPKLENFMIDDNKINYWMPVDQ 540
+ +F +CPKC A R+TDTMDTF DSSWYY+RY P + D K N WMPVDQ
Sbjct: 283 AHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWMPVDQ 342
Query: 541 YIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRLLTQGMILNKTYY-RIENSSNKKR 599
YIGG+EHA+LHLLY+RF+TK +++LG++K EPF L TQGM+L T + +E + R
Sbjct: 343 YIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVR 402
Query: 600 WYNPDDV-------KITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINT 652
P + ++L+ K + + + + MSKSK NG+ +
Sbjct: 403 LPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKE 462
Query: 653 YGADSTRLFIIFSAPPEKNLEWSDIGIEGAYR 684
GAD R+ I+F+APPE + W++ G++GA+R
Sbjct: 463 QGADIARITILFAAPPENEMVWTEEGVQGAWR 494
Score = 179 bits (453), Expect = 6e-49
Identities = 111/244 (45%), Positives = 153/244 (62%), Gaps = 5/244 (2%)
Query: 3 KKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTIN 62
+KYN IE Q +W + + + GK Y M PYPSG LHMGH++NYT+
Sbjct: 2 EKYNPHAIEAKWQRFWEEKGFMKAKDLPG--GRGKQYVLVMFPYPSGDLHMGHLKNYTMG 59
Query: 63 DVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGLAI 122
DV+ R+ RM GY VL PMGWDAFG+PAENAA+ P WTY N+ K+ L +G+
Sbjct: 60 DVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILY 119
Query: 123 DWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGR-GWR 181
DW RE+ TC P+YY+WNQWIFLKM+++G+ Y+ G+VNW P +TVLANEQV+ GR
Sbjct: 120 DWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRH 179
Query: 182 SDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLMQVNWIGKSKGIFLAFPHN 241
D +EK+++ +Y +IT YAE LL+ ++ WP+KV+ MQ WIG+ + ++
Sbjct: 180 EDTPVEKRELEQWYLRITAYAERLLKDLEG--LNWPEKVKAMQRAWIGRLRDWLISRQRY 237
Query: 242 IKDP 245
P
Sbjct: 238 WGTP 241
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 152 bits (384), Expect = 4e-41
Identities = 39/196 (19%), Positives = 76/196 (38%), Gaps = 9/196 (4%)
Query: 37 KFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILN 96
K LPY +G +H+GH+ + DV RY RM G+ V DA G P A
Sbjct: 3 KILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL 62
Query: 97 NTSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKT 156
+P + + + G I + T S + + ++ I+ ++ + G I +T
Sbjct: 63 GITPEQMIGEMSQEHQTDF--AGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRT 120
Query: 157 GIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYW 216
+DP + L + V++G + ++ + +++E L + +
Sbjct: 121 ISQLYDPEKGMFLPDRFVVSGA------TPVMRDSEHFFFDLPSFSEMLQAWTRSG-ALQ 173
Query: 217 PKKVRLMQVNWIGKSK 232
+ MQ + +
Sbjct: 174 EQVANKMQEWFESGLQ 189
Score = 45.3 bits (106), Expect = 2e-05
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 634 EKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKN 671
KMSKS+ I T +N + ADS R + +
Sbjct: 293 AKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRID 330
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 146 bits (369), Expect = 2e-38
Identities = 55/266 (20%), Positives = 103/266 (38%), Gaps = 23/266 (8%)
Query: 1 MQKKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYT 60
+ K Y+ +E W K ++ F P +G LHMGH + +
Sbjct: 3 LPKAYDPKSVEPKWAEKWAKNPFVANPKSG----KPPFVIFMPPPNVTGSLHMGHALDNS 58
Query: 61 INDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAK----------------WT 104
+ D + RY RM G+ + G D G+ + K W
Sbjct: 59 LQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWK 118
Query: 105 YDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPI 164
++ + KQL LG + DWSRE T K + ++ F + + G+ Y+ +VNW P
Sbjct: 119 EESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPR 178
Query: 165 EKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPK-KVRLM 223
+T L++ + R IE P ++ ++ AEE+L+ +++ + + + +
Sbjct: 179 CETTLSDLE--VETCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKV 236
Query: 224 QVNWIGKSKGIFLAFPHNIKDPNKNN 249
++W+ K ++
Sbjct: 237 NMDWLENVKDWNISRQLWWGHQIPAW 262
Score = 130 bits (327), Expect = 7e-33
Identities = 59/302 (19%), Positives = 102/302 (33%), Gaps = 72/302 (23%)
Query: 384 WKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNKKNIFRLRDWAISRQRYW 443
Y + + I+ + N + ++DW ISRQ +W
Sbjct: 196 TPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWW 255
Query: 444 GTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKENKKFLHVSCPKCNKLAFRETDT 503
G IP YC+ C +V VP + + P +C + R+ D
Sbjct: 256 GHQIPAWYCEDCQAVNVPRPERYLEDPTSC----------------EACGSPRLKRDEDV 299
Query: 504 MDTFVDSSWYYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTKLMY 563
DT+ S+ + + + + + + + P D + G + IL L +R +
Sbjct: 300 FDTWFSSALWPLSTL-----GWPEETEDLKAFYPGDVLVTG--YDILFLWVSRMEVSGYH 352
Query: 564 NLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKL 623
+G PF +L G++L++
Sbjct: 353 FMG----ERPFKTVLLHGLVLDEKG----------------------------------- 373
Query: 624 DKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAY 683
+KMSKSK N IDP + YGAD+ R +I+ A +++ +E A
Sbjct: 374 ----------QKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMAR 423
Query: 684 RF 685
F
Sbjct: 424 NF 425
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 146 bits (368), Expect = 4e-38
Identities = 48/299 (16%), Positives = 93/299 (31%), Gaps = 20/299 (6%)
Query: 3 KKYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTIN 62
+ NF ++E+ +W + +Q + + + ++ P +G H+GH + +
Sbjct: 6 GEPNFPKLEEEVLAFWKREKIFQKSVENRK-GGPRYTVYEGPPTANGLPHVGHAQARSYK 64
Query: 63 DVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAK-----------------WTY 105
D+ RY M GY GWD G+P E +K +
Sbjct: 65 DLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVF 124
Query: 106 DNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWD--P 163
+ + +D T P Y + W +F RG++Y+ +V +
Sbjct: 125 TYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRC 184
Query: 164 IEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRLM 223
+ WR + ++ K T + +EL+ ++ P
Sbjct: 185 GTPLSSHEVALGYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVPPHIKEGR 244
Query: 224 QVNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLA 282
W+ L+ P GK + ++ T + P P
Sbjct: 245 YGEWLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHR 303
Score = 127 bits (320), Expect = 6e-32
Identities = 58/256 (22%), Positives = 89/256 (34%), Gaps = 59/256 (23%)
Query: 432 LRDWAISRQRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKENKKFLHVSCP 491
L DWA+SR RYWGTP+PI C +CG + T ++ ++
Sbjct: 252 LVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVEL 311
Query: 492 KCN--KLAFRETDTMDTFVDSSWYYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAI 549
C R +D + DS + E+ + P D GI+
Sbjct: 312 ACACGGTMRRVPYVIDVWYDSGAMPFASLHYPFEH----EEVFRESFPADFIAEGIDQT- 366
Query: 550 LHLLYARFWTKLMYNLGLIKFN-EPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKI 608
R W ++ LG++ F F ++ G+IL++
Sbjct: 367 ------RGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKG-------------------- 400
Query: 609 TLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPP 668
+KMSKSK N +DP I +GAD+ R +I SAPP
Sbjct: 401 -------------------------QKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPP 435
Query: 669 EKNLEWSDIGIEGAYR 684
E + + + R
Sbjct: 436 EADRRFGPNLVRETVR 451
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 130 bits (326), Expect = 1e-32
Identities = 55/217 (25%), Positives = 88/217 (40%), Gaps = 13/217 (5%)
Query: 4 KYNFVEIEKITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTIND 63
+ E Q W+ + Y + N F PY +G LHMGH N + D
Sbjct: 17 RGGLPNKEPQIQEKWDAEDQYHKALEKNK-GNETFILHDGPPYANGNLHMGHALNKILKD 75
Query: 64 VMYRYMRMNGYNVLMPMGWDAFGMPAENAAILNNTSPAKWT------------YDNVSYM 111
+ RY M G+ GWD G+P E A K + + +
Sbjct: 76 FIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFALEQIELQ 135
Query: 112 KKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLAN 171
KK LG+ D++ IT P+Y IF +M +G+IYK V W P ++ LA
Sbjct: 136 KKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAE 195
Query: 172 EQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEY 208
++ WR+ + + P ++A I+ +++L+
Sbjct: 196 AEIEYPHDWRTKKPVIFRATPQWFASISKVRQDILDA 232
Score = 106 bits (264), Expect = 1e-24
Identities = 51/305 (16%), Positives = 88/305 (28%), Gaps = 67/305 (21%)
Query: 383 IWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNKKNIFRLRDWAISRQRY 442
K I + S +A + + + +W ISRQR
Sbjct: 205 RTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRV 264
Query: 443 WGTPIPIIYCDSCGSVPVPEKDLPVIL-----PETCVPNNLLKENKKFLHVSCPKCNKLA 497
WG P+P+ Y ++ + E V K+ N
Sbjct: 265 WGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTF 324
Query: 498 FRETDTMDTFVDSSWYYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARF 557
+ETD MD + DS + + + + P D Y+ G + Y +
Sbjct: 325 TKETDIMDVWFDSGSSHR----------GVLETRPELSFPADMYLEGSDQ------YRGW 368
Query: 558 WTKLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPI 617
+ + + P+ LL+ G +++
Sbjct: 369 FNSSITTSVATRGVSPYKFLLSHGFVMDGE------------------------------ 398
Query: 618 HAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDI 677
+KMSKS N I P + GAD RL++ S ++ SD
Sbjct: 399 ---------------GKKMSKSLGNVIVPDQVVKQKGADIARLWVS-STDYLADVRISDE 442
Query: 678 GIEGA 682
++
Sbjct: 443 ILKQT 447
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 126 bits (316), Expect = 4e-32
Identities = 38/191 (19%), Positives = 74/191 (38%), Gaps = 2/191 (1%)
Query: 37 KFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILN 96
FY + + Y + + H+GH + D + R+ R++GY G D G AA
Sbjct: 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAA 63
Query: 97 NTSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKT 156
P + K+ LG I + I T ++ K Q + K+++ G IY
Sbjct: 64 GEDPKAFVDRVSGRFKRAWDLLG--IAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGE 121
Query: 157 GIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYW 216
+ + ++++ G +E++K Y+ ++ Y L EY+++
Sbjct: 122 YEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLI 181
Query: 217 PKKVRLMQVNW 227
+ +V
Sbjct: 182 RPEGYRNEVLA 192
Score = 47.7 bits (112), Expect = 4e-06
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 634 EKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGAY 683
KMSK+ N +DP + YG D+ R +++ P ++ S+ + Y
Sbjct: 296 RKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRY 345
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
(MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Length = 361
Score = 125 bits (314), Expect = 1e-31
Identities = 51/216 (23%), Positives = 86/216 (39%), Gaps = 10/216 (4%)
Query: 37 KFYTCSMLPYPSGKLHMGHVRN-YTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAIL 95
++ S LPY +G +H GH+ Y D+ RY+R+ G +V+ G D G P A+
Sbjct: 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALK 62
Query: 96 NNTSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKK 155
SP + + +K I + T P +YK +Q FLK ++ G + KK
Sbjct: 63 EGRSPREIVDEFHEQIKIT--FQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKK 120
Query: 156 TGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVK-KKLP 214
+ +K L + I GR + YY K+ ++AE L +++ +
Sbjct: 121 VTKQAYCEHDKMFLPDRFAICGRPIS------FRDSAHYYIKMQDFAERLKRWIEKQPWK 174
Query: 215 YWPKKVRLMQVNWIGKSKGIFLAFPHNIKDPNKNNK 250
K + L + + + I I P
Sbjct: 175 PNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEED 210
Score = 48.9 bits (115), Expect = 2e-06
Identities = 35/297 (11%), Positives = 76/297 (25%), Gaps = 12/297 (4%)
Query: 380 SDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNKKNIFRLRDWAISR 439
S + D + ++ + + + + L +N ++
Sbjct: 66 SPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQA 125
Query: 440 QRYWGTPIPIIYCDSCGSVPVPEKDLPVILPETCVPNNLLKENKKFLHVSCPKCNKLAFR 499
CG P+ +D + LK + N +
Sbjct: 126 YCEHDKMFLPDRFAICGR-PISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMVLSW 184
Query: 500 ETDTMDTFVDSSWYYMRYISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWT 559
+ ++ + P E M ++ YI + W
Sbjct: 185 IEEGLEERAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWK 244
Query: 560 KLMYNLGLIKFNEPFIRLLTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHA 619
K N+ FI + K + + + P +
Sbjct: 245 KYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNL---PYDIPANE 301
Query: 620 ILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSD 676
L L+ +K S S+N I ++ + AD R ++ P ++ ++S
Sbjct: 302 YLTLEG--------KKFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSF 350
>d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 192
Score = 75.4 bits (184), Expect = 5e-16
Identities = 46/202 (22%), Positives = 88/202 (43%), Gaps = 17/202 (8%)
Query: 230 KSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLA--IFAAR 287
+S+G + FP ++ + ++ +FTTR D ++G TF V++PEHPL + A
Sbjct: 1 RSEGAEILFP--VEG--------KEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPE 50
Query: 288 NNLLLQKFILEYKKNNNI--ESNNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGR 345
+ ++ K+ I ++ K + L+P T + I ++ +YV+
Sbjct: 51 KREEVLAYVEAAKRKTEIERQAEGREKTGVFLGAYALNPATGERIPIWTADYVLFGYGTG 110
Query: 346 AAIGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNM 405
A + VPAH++ D+ FA+K + V + +E +NS ++
Sbjct: 111 AIMAVPAHDQRDYEFARKFG---LPIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGT 167
Query: 406 SHKEATNAISTDLIKLGLGNKK 427
+E + L + GLG +
Sbjct: 168 ESEEGKRKVIAWLEEKGLGKGR 189
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 64.0 bits (154), Expect = 2e-11
Identities = 23/203 (11%), Positives = 50/203 (24%), Gaps = 11/203 (5%)
Query: 17 YWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNV 76
+W A + + Y PSG +H+G+ R ++ +R GY V
Sbjct: 1 HWADYIADKIIR---ERGEKEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEV 57
Query: 77 LMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYY 136
WD + + + Y+ +S + + +
Sbjct: 58 RHIHMWDDYDRFRKVPRNVPQEWKD--------YLGMPISEVPDPWGCHESYAEHFMRKF 109
Query: 137 KWNQWIFLKMFKRGIIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYA 196
+ + + + I + I ++ +P +
Sbjct: 110 EEEVEKLGIEVDLLYASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPENWW 169
Query: 197 KITNYAEELLEYVKKKLPYWPKK 219
Y E + K
Sbjct: 170 PAMVYCPEHRREAEIIEWDGGWK 192
Score = 35.5 bits (80), Expect = 0.022
Identities = 25/276 (9%), Positives = 56/276 (20%), Gaps = 9/276 (3%)
Query: 398 NSCKYNNMSHKEATNAISTDLIKLGLGNKKNIFRLRDWAISRQRYWGTPIPIIYCDSCGS 457
++ + + D + N ++ + Y +
Sbjct: 48 HALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMR 107
Query: 458 VPVPEKDLPVILPETCVPNNLLKENKKFLHVSCPKCNKLAFRETDTMDTFVDSSWYYMRY 517
E + I + + L K + + K + +
Sbjct: 108 KFEEEVEKLGIEVDLLYASELYKRGE-YSEEIRLAFEKRDKIMEILNKYREIAKQPPLPE 166
Query: 518 ISPKLENFMIDDNKINYWMPVDQYIGGIEHAILHLLYARFWTKLMYNLGLIKFNEPFIRL 577
+ + + + D L
Sbjct: 167 NWWPAMVYCPEHRREAEIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMRWSH 226
Query: 578 LTQGMILNKTYYRIENSSNKKRWYNPDDVKITLDKKNKPIHAILKLDKKPVIIGGIEKMS 637
+ + SS +V + ++ + + + KMS
Sbjct: 227 FGVDFEPAGKDHLVAGSSYDTGKEIIKEVYGKEAPLS-LMYEFVGIKGQKG------KMS 279
Query: 638 KSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLE 673
SK N I R FI P K ++
Sbjct: 280 GSKGNVILLSDLYEVLEPGLVR-FIYARHRPNKEIK 314
>d1h3na1 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 128
Score = 59.5 bits (143), Expect = 3e-11
Identities = 29/146 (19%), Positives = 60/146 (41%), Gaps = 18/146 (12%)
Query: 685 FLNRVWNFSYILAPRIINIINLNIFHNDFSVIKFNNNQKVFRRKIHKILQQINRDIKRIQ 744
FLNR++ ++ F + K+H+ L+++ D++ ++
Sbjct: 1 FLNRIYRRVAEDREALLETSG------VFQAEALEGKDRELYGKLHETLKKVTEDLEALR 54
Query: 745 YNTVVSGCMKIFNILERINSETKFDNNKNTNNDILLYEGMSIFLRVLNPIAPHITHILWK 804
+NT ++ M+ N ++ K+ + + +L++L P APH+ LW
Sbjct: 55 FNTAIAALMEFLNA--------LYEYRKDRPVTPVYRTAIRYYLQMLFPFAPHLAEELWH 106
Query: 805 ELKYSIQQGDILNACWPKIDSLALEE 830
+ A WP++D ALE+
Sbjct: 107 WFWP----DSLFEAGWPELDEKALEK 128
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 55.7 bits (133), Expect = 8e-09
Identities = 23/112 (20%), Positives = 36/112 (32%), Gaps = 3/112 (2%)
Query: 37 KFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAENAAILN 96
Y C + Y H+GH R + DV+ RY+R GY + A N
Sbjct: 24 GMYVCGITVY--DLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANEN 81
Query: 97 NTSPAKWTYDNVSYMKKQLSSLG-LAIDWSREIITCSPKYYKWNQWIFLKMF 147
S ++ M K +L L D + + + + K
Sbjct: 82 GESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGH 133
Score = 44.5 bits (104), Expect = 3e-05
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 634 EKMSKSKNNGIDPQTQINTYGADSTRLFIIFSAPPEKNLEWSDIGIEGA 682
EKMSKS N + + Y A++ R F++ S L +S+ ++ A
Sbjct: 265 EKMSKSLGNFFTVRDVLKYYDAETVRYFLM-SGHYRSQLNYSEENLKQA 312
>d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 194
Score = 52.3 bits (124), Expect = 3e-08
Identities = 31/201 (15%), Positives = 64/201 (31%), Gaps = 28/201 (13%)
Query: 230 KSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAAR-- 287
+S I++AF +KD + + K I+TT I + PE +
Sbjct: 4 RSASIYVAFN--VKDDK--GVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGE 59
Query: 288 -----NNLLLQKFILEYKKNNNIESNNLLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKS 342
L +I+ L + HP ++E V ++V +
Sbjct: 60 KYIIAEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHPFLDRESLVINGDHVTTDA 119
Query: 343 YGRAAIGVPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKY 402
P H + D+ +++ ++ ID + + ++
Sbjct: 120 GTGCVHTAPGHGEDDYIVGQQY-----------------ELPVISPIDDKGVFTEEGGQF 162
Query: 403 NNMSHKEATNAISTDLIKLGL 423
M + +A A++ L + G
Sbjct: 163 EGMFYDKANKAVTDLLTEKGA 183
>d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus
thermophilus [TaxId: 274]}
Length = 179
Score = 49.2 bits (116), Expect = 3e-07
Identities = 32/198 (16%), Positives = 60/198 (30%), Gaps = 27/198 (13%)
Query: 234 IFLAFPHNIKDPNKNNKLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQ 293
+++ FP +K+P K ++ L I+TT + G + PE+ A F + L+
Sbjct: 3 VYVRFP--LKEPKK--LGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALIL 58
Query: 294 K-FILEYKKNNNIESNNLLKKSILTQLK---VLHPLTNQEIKVFVVNYVIEKSYGRAAIG 349
+ + L L + V + +YV ++
Sbjct: 59 EEGLGRKLLGEGTPVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQ 118
Query: 350 VPAHNKHDFYFAKKHSLLIKQVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKE 409
PA D A+ + + + + + +E
Sbjct: 119 APAFGAEDLETARVY-------------------GLPLLKTVDEEGKLLVEPFKGLYFRE 159
Query: 410 ATNAISTDLIKLGLGNKK 427
A AI DL G K+
Sbjct: 160 ANRAILRDLRGRGFLFKE 177
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS)
{Thermus thermophilus [TaxId: 274]}
Length = 370
Score = 44.9 bits (105), Expect = 3e-05
Identities = 23/182 (12%), Positives = 60/182 (32%), Gaps = 2/182 (1%)
Query: 45 PYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAEN--AAILNNTSPAK 102
P+ +LH+GH+RN + D + R + G VL+ D G A A+ +
Sbjct: 16 VNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWD 75
Query: 103 WTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRGIIYKKTGIVNWD 162
+ + L ++ R + + + R ++ + + +
Sbjct: 76 GKEKYDHFAGRAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALN 135
Query: 163 PIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVKKKLPYWPKKVRL 222
++ ++ + + ++ ++ + YA L+ +P +
Sbjct: 136 ARYDLLVWESDIVRAGLLQKALALLEQSPHVFRPREGKYAGALVMDASPVIPGLEDPFFV 195
Query: 223 MQ 224
+
Sbjct: 196 LL 197
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 348
Score = 38.7 bits (89), Expect = 0.003
Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 9/105 (8%)
Query: 45 PYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVL---------MPMGWDAFGMPAENAAIL 95
P + H GH+R+ I + G+ V+ G A G
Sbjct: 17 PNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEA 76
Query: 96 NNTSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQ 140
P +D + K + G +I + + +Y+K +
Sbjct: 77 LVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRME 121
>d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus
thermophilus [TaxId: 274]}
Length = 143
Score = 32.9 bits (74), Expect = 0.073
Identities = 25/178 (14%), Positives = 48/178 (26%), Gaps = 46/178 (25%)
Query: 250 KLIQNGKLWIFTTRIDIIYGITFCVISPEHPLAIFAARNNLLLQKFILEYKKNNNIESNN 309
++ G + I T R + ++ + PE
Sbjct: 9 EVEGGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKR-------------------- 48
Query: 310 LLKKSILTQLKVLHPLTNQEIKVFVVNYVIEKSYGRAAIGVPAHNKHDFYFAKKHSLLIK 369
PLT I + V + A PAH+ D+ ++H L
Sbjct: 49 -----------ARIPLTEVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPV 97
Query: 370 QVINVKNKSYSDKIWKDWYIDKENCYCINSCKYNNMSHKEATNAISTDLIKLGLGNKK 427
VIN++ + +++ + + EA + G K+
Sbjct: 98 SVINLEGRMEGERVPEAL---------------RGLDRFEARRKAVELFREAGHLVKE 140
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS)
{Escherichia coli [TaxId: 562]}
Length = 331
Score = 32.5 bits (73), Expect = 0.18
Identities = 38/252 (15%), Positives = 77/252 (30%), Gaps = 50/252 (19%)
Query: 31 TRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAFGMPAE 90
TRFP P P+G LH+GH ++ +N + + +
Sbjct: 22 TRFP----------PEPNGYLHIGHAKSICLN---FGIAQDYKGQCNLRF---------- 58
Query: 91 NAAILNNTSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCSPKYYKWNQWIFLKMFKRG 150
++T+P K + V +K + + S Y+ +++ +G
Sbjct: 59 -----DDTNPVKEDIEYVESIKNDVEW---LGFHWSGNVRYSSDYFDQLHAYAIELINKG 110
Query: 151 IIYKKTGIVNWDPIEKTVLANEQVINGRGWRSDAIIEKKKIPMYYAKITNYAEELLEYVK 210
+ Y L EQ+ RG + + K Y + L E ++
Sbjct: 111 LAYVDE------------LTPEQIREYRGT----LTQPGKNSPYRDRSVEENLALFEKMR 154
Query: 211 KKLPYWPKKVRLMQVNWIGKSKGIFLAFPHNIKDPNKNNKLIQNGKLWIFT---TRIDII 267
K +++ + + IK + + ++ D +
Sbjct: 155 AGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDAL 214
Query: 268 YGITFCVISPEH 279
GIT + + E
Sbjct: 215 EGITHSLCTLEF 226
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS)
{Thermus thermophilus [TaxId: 274]}
Length = 305
Score = 31.7 bits (71), Expect = 0.40
Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 13/43 (30%)
Query: 31 TRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNG 73
TR P P+G H+G N Y + R NG
Sbjct: 4 TRIA----------PSPTGDPHVGTAYIALFN---YAWARRNG 33
>d1mixa2 b.55.1.5 (A:309-400) Talin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 92
Score = 28.6 bits (64), Expect = 0.78
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 605 DVKITLDKKNKPIHAILKLDKKPVIIGGIEKMSKSKNNGIDPQTQINTYGADSTRLFIIF 664
VK + KNK + +L + K+ V+ +++ +K + T I + A + F
Sbjct: 6 LVKEKMKGKNKLVPRLLGITKECVMR--VDEKTK-EVIQEWSLTNIKRWAASPKSFTLDF 62
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB
{Escherichia coli [TaxId: 562]}
Length = 286
Score = 30.2 bits (67), Expect = 1.0
Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 13/43 (30%)
Query: 31 TRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMNG 73
RF P PSG+LH G + + Y R
Sbjct: 5 GRFA----------PSPSGELHFGSLIAALGS---YLQARARQ 34
>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp.
[TaxId: 1143]}
Length = 381
Score = 29.1 bits (63), Expect = 2.5
Identities = 16/151 (10%), Positives = 33/151 (21%)
Query: 13 ITQCYWNKINAYQTTENDTRFPNGKFYTCSMLPYPSGKLHMGHVRNYTINDVMYRYMRMN 72
+ C ++ N D G GH V Y+ +
Sbjct: 168 MAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGD 227
Query: 73 GYNVLMPMGWDAFGMPAENAAILNNTSPAKWTYDNVSYMKKQLSSLGLAIDWSREIITCS 132
+ P + + ++ + Q + L A+ + T
Sbjct: 228 CLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAE 287
Query: 133 PKYYKWNQWIFLKMFKRGIIYKKTGIVNWDP 163
+Y Q + + P
Sbjct: 288 ERYQAICQRSEFLWRGLNQLPHVHCLATSAP 318
>d2bodx1 c.6.1.1 (X:2-286) Cellulase E2 {Thermomonospora fusca,
strain yx [TaxId: 2021]}
Length = 285
Score = 28.7 bits (64), Expect = 2.9
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 12/58 (20%)
Query: 81 GWDAFGMPAENAAILN-------NTSPAKWTYDNVSYMKKQLSSLG-----LAIDWSR 126
+ A I N NTS +WT D V+Y K LS++G ID SR
Sbjct: 163 SPAQMASWLQQADISNSAHGIATNTSNYRWTADEVAYAKAVLSAIGNPSLRAVIDTSR 220
>d1j72a1 d.109.1.1 (A:11-124) Macrophage capping protein Cap G
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 27.1 bits (60), Expect = 3.7
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 143 FLKMFKRGIIYKKTGI 158
F+ F RG+ Y++ G+
Sbjct: 96 FMSYFPRGLKYQEGGV 111
>d1fm0e_ d.41.5.1 (E:) Molybdopterin synthase subunit MoaE
{Escherichia coli [TaxId: 562]}
Length = 149
Score = 27.6 bits (61), Expect = 3.8
Identities = 5/29 (17%), Positives = 15/29 (51%)
Query: 200 NYAEELLEYVKKKLPYWPKKVRLMQVNWI 228
+ +++Y+K + P+W ++ W+
Sbjct: 108 EAGQFIMDYLKTRAPFWKREATPEGDRWV 136
>d1xv2a_ d.290.1.1 (A:) Hypothetical protein SA2394 {Staphylococcus
aureus [TaxId: 1280]}
Length = 232
Score = 27.4 bits (61), Expect = 6.9
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 52 HMGHVRNYTINDVMYRYMRMNGYNVLMPMGWDAF 85
+ GHV ++ ++DV+ + P+ + F
Sbjct: 181 YGGHVLDFEVDDVVVEIQNFETFQQHFPVNNETF 214
>d1hk8a_ c.7.1.3 (A:) Class III anaerobic ribonucleotide reductase
NRDD subunit {Bacteriophage T4 [TaxId: 10665]}
Length = 561
Score = 28.0 bits (62), Expect = 7.1
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 425 NKKNIFRLRDWAISRQRYWGTPIPIIYCDSCG 456
N K + + D+A Y+G +P+ C +CG
Sbjct: 491 NLKGLEAVWDYAAQHLDYFGVNMPVDKCFTCG 522
>d3cipg1 d.109.1.1 (G:2-125) Gelsolin {Human (Homo sapiens) [TaxId:
9606]}
Length = 124
Score = 26.4 bits (58), Expect = 8.7
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 143 FLKMFKRGIIYKKTGI 158
FL FK G+ YKK G+
Sbjct: 105 FLGYFKSGLKYKKGGV 120
>d2vika_ d.109.1.1 (A:) Villin, domain 1 (res. 1-126) {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 126
Score = 26.4 bits (58), Expect = 8.8
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 143 FLKMFKRGIIYKKTGI 158
F FK+G+IYK+ G+
Sbjct: 106 FRAYFKQGLIYKQGGV 121
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.433
Gapped
Lambda K H
0.267 0.0620 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,677,743
Number of extensions: 189255
Number of successful extensions: 615
Number of sequences better than 10.0: 1
Number of HSP's gapped: 592
Number of HSP's successfully gapped: 64
Length of query: 893
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 800
Effective length of database: 1,130,706
Effective search space: 904564800
Effective search space used: 904564800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.0 bits)