Query psy2891
Match_columns 452
No_of_seqs 293 out of 2114
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 20:15:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2891.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2891hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0305 DnaB Replicative DNA h 100.0 4.2E-94 9E-99 702.0 44.0 433 13-452 1-433 (435)
2 PRK08840 replicative DNA helic 100.0 1.5E-91 3.2E-96 706.0 48.5 444 7-452 12-456 (464)
3 PRK08006 replicative DNA helic 100.0 2.3E-91 4.9E-96 705.9 48.7 438 13-452 25-463 (471)
4 PRK07004 replicative DNA helic 100.0 3.5E-91 7.5E-96 705.3 49.3 449 3-452 3-451 (460)
5 PRK08760 replicative DNA helic 100.0 1.9E-90 4.1E-95 701.8 47.8 436 13-452 31-467 (476)
6 PRK05636 replicative DNA helic 100.0 3.6E-90 7.9E-95 700.8 47.8 434 13-452 68-502 (505)
7 PRK06904 replicative DNA helic 100.0 7.8E-90 1.7E-94 695.8 47.6 440 12-452 20-462 (472)
8 PRK06321 replicative DNA helic 100.0 8.7E-89 1.9E-93 686.4 47.9 436 12-452 13-465 (472)
9 PRK05595 replicative DNA helic 100.0 8.4E-88 1.8E-92 682.7 48.2 435 11-452 4-438 (444)
10 PRK09165 replicative DNA helic 100.0 1.4E-87 3E-92 685.2 48.5 444 3-452 10-487 (497)
11 PRK05748 replicative DNA helic 100.0 7.7E-86 1.7E-90 670.3 48.6 436 11-452 6-442 (448)
12 PRK06749 replicative DNA helic 100.0 3E-85 6.4E-90 655.6 45.8 421 15-451 2-426 (428)
13 PRK08506 replicative DNA helic 100.0 9.8E-84 2.1E-88 653.8 47.7 428 14-452 2-451 (472)
14 TIGR03600 phage_DnaB phage rep 100.0 1.6E-83 3.5E-88 649.7 46.5 419 18-442 1-421 (421)
15 TIGR00665 DnaB replicative DNA 100.0 5E-83 1.1E-87 649.4 49.2 431 15-452 2-432 (434)
16 PHA02542 41 41 helicase; Provi 100.0 7.7E-76 1.7E-80 591.6 44.0 405 21-452 1-428 (473)
17 PRK07773 replicative DNA helic 100.0 5.3E-70 1.1E-74 591.8 43.7 386 13-405 22-407 (886)
18 PF03796 DnaB_C: DnaB-like hel 100.0 8.2E-57 1.8E-61 426.7 25.1 257 196-452 1-257 (259)
19 cd00984 DnaB_C DnaB helicase C 100.0 4E-45 8.7E-50 343.7 27.4 241 203-444 2-242 (242)
20 cd01122 GP4d_helicase GP4d_hel 100.0 1.9E-39 4.1E-44 310.3 26.5 253 194-451 10-270 (271)
21 PRK05973 replicative DNA helic 100.0 1.1E-28 2.4E-33 226.4 18.4 170 204-409 54-223 (237)
22 COG1066 Sms Predicted ATP-depe 99.9 1.1E-26 2.3E-31 221.4 18.0 192 193-438 71-265 (456)
23 cd01121 Sms Sms (bacterial rad 99.9 1.9E-24 4.1E-29 212.5 22.7 192 194-438 61-255 (372)
24 TIGR03878 thermo_KaiC_2 KaiC d 99.9 4.7E-24 1E-28 201.4 20.6 209 195-437 2-239 (259)
25 TIGR00416 sms DNA repair prote 99.9 9.3E-24 2E-28 213.4 21.3 193 193-438 72-267 (454)
26 PRK11823 DNA repair protein Ra 99.9 1.6E-23 3.5E-28 211.6 22.7 193 193-438 58-253 (446)
27 TIGR03877 thermo_KaiC_1 KaiC d 99.9 4E-23 8.6E-28 193.1 21.0 214 196-437 2-217 (237)
28 KOG2373|consensus 99.9 2E-23 4.3E-28 193.6 13.1 260 165-449 230-493 (514)
29 TIGR03881 KaiC_arch_4 KaiC dom 99.9 3.8E-22 8.2E-27 185.9 21.1 214 197-443 2-220 (229)
30 cd01393 recA_like RecA is a b 99.9 4.1E-22 8.8E-27 185.3 19.2 206 197-439 1-225 (226)
31 TIGR02239 recomb_RAD51 DNA rep 99.9 1.1E-21 2.3E-26 189.7 22.4 222 178-441 62-305 (316)
32 PRK04328 hypothetical protein; 99.9 1E-21 2.2E-26 184.6 21.2 214 196-437 4-219 (249)
33 PF06745 KaiC: KaiC; InterPro 99.9 4.1E-22 9E-27 185.2 17.2 206 197-444 1-217 (226)
34 PRK09361 radB DNA repair and r 99.9 2.6E-21 5.7E-26 179.7 21.5 203 196-442 4-216 (225)
35 PLN03186 DNA repair protein RA 99.9 3.3E-21 7.1E-26 187.1 22.2 212 192-442 100-332 (342)
36 cd01394 radB RadB. The archaea 99.9 4.1E-21 8.8E-26 177.6 20.7 204 197-442 1-212 (218)
37 TIGR02238 recomb_DMC1 meiotic 99.9 7.3E-20 1.6E-24 176.3 26.0 211 193-442 74-305 (313)
38 TIGR03880 KaiC_arch_3 KaiC dom 99.9 1.8E-20 3.8E-25 174.0 20.7 198 200-437 1-203 (224)
39 cd00983 recA RecA is a bacter 99.9 3.8E-20 8.2E-25 177.3 22.5 219 193-447 32-265 (325)
40 PLN03187 meiotic recombination 99.9 7.9E-20 1.7E-24 177.2 24.1 210 194-442 105-334 (344)
41 PRK09302 circadian clock prote 99.9 2.6E-20 5.6E-25 193.2 21.0 202 193-434 9-221 (509)
42 TIGR02012 tigrfam_recA protein 99.9 3.9E-20 8.4E-25 177.2 19.8 217 193-445 32-263 (321)
43 TIGR02655 circ_KaiC circadian 99.8 4.6E-20 1E-24 189.3 20.7 203 194-437 242-447 (484)
44 PF13481 AAA_25: AAA domain; P 99.8 6.1E-21 1.3E-25 173.0 12.6 171 194-378 11-192 (193)
45 cd01123 Rad51_DMC1_radA Rad51_ 99.8 6.2E-20 1.4E-24 171.7 18.4 207 197-441 1-228 (235)
46 PRK09354 recA recombinase A; P 99.8 3.8E-19 8.2E-24 171.6 22.3 219 193-447 37-270 (349)
47 PF00772 DnaB: DnaB-like helic 99.8 1.1E-20 2.4E-25 153.2 8.8 102 15-116 2-103 (103)
48 PRK04301 radA DNA repair and r 99.8 5.3E-19 1.2E-23 172.3 22.1 212 193-441 80-308 (317)
49 TIGR02236 recomb_radA DNA repa 99.8 7.6E-19 1.6E-23 171.0 22.7 210 193-440 73-301 (310)
50 TIGR02237 recomb_radB DNA repa 99.8 1.3E-18 2.7E-23 159.8 21.6 189 204-437 1-197 (209)
51 PTZ00035 Rad51 protein; Provis 99.8 2.1E-18 4.6E-23 168.1 23.5 210 193-441 96-326 (337)
52 PRK06067 flagellar accessory p 99.8 1.8E-18 3.9E-23 161.6 21.2 203 193-436 3-209 (234)
53 PF08423 Rad51: Rad51; InterP 99.8 9.3E-19 2E-23 164.6 19.2 210 195-441 18-246 (256)
54 PRK09302 circadian clock prote 99.8 1.1E-18 2.3E-23 181.1 21.0 201 194-435 252-455 (509)
55 TIGR02655 circ_KaiC circadian 99.8 2.8E-18 6.1E-23 176.1 21.0 199 196-434 2-211 (484)
56 cd01125 repA Hexameric Replica 99.8 4.7E-18 1E-22 159.2 17.5 206 214-437 1-225 (239)
57 cd01124 KaiC KaiC is a circadi 99.8 2.5E-17 5.5E-22 148.4 16.5 177 216-435 1-185 (187)
58 COG0467 RAD55 RecA-superfamily 99.7 1.3E-16 2.9E-21 151.3 18.3 209 195-434 3-214 (260)
59 PRK09519 recA DNA recombinatio 99.7 8E-16 1.7E-20 161.9 22.9 211 193-439 37-259 (790)
60 PRK08533 flagellar accessory p 99.7 9.9E-16 2.1E-20 142.1 20.3 209 195-447 4-221 (230)
61 PF00154 RecA: recA bacterial 99.7 3.2E-15 7E-20 142.9 21.1 215 193-443 30-259 (322)
62 COG0468 RecA RecA/RadA recombi 99.6 1.4E-14 3.1E-19 135.9 19.5 216 193-444 38-263 (279)
63 cd01120 RecA-like_NTPases RecA 99.6 1.4E-14 3.1E-19 127.0 12.9 163 216-409 1-165 (165)
64 COG2874 FlaH Predicted ATPases 99.5 5.6E-13 1.2E-17 117.4 16.1 207 197-447 10-226 (235)
65 COG3598 RepA RecA-family ATPas 99.5 1.8E-12 4E-17 120.3 15.5 150 211-379 86-246 (402)
66 KOG1434|consensus 99.4 5.3E-13 1.2E-17 119.7 10.2 190 193-410 93-301 (335)
67 KOG1564|consensus 99.4 2E-11 4.3E-16 111.4 16.0 167 195-378 82-266 (351)
68 PF07088 GvpD: GvpD gas vesicl 99.1 2.5E-09 5.4E-14 102.5 14.1 203 211-450 7-211 (484)
69 PRK04296 thymidine kinase; Pro 98.7 2.5E-07 5.3E-12 83.4 12.0 141 214-410 2-142 (190)
70 PRK07773 replicative DNA helic 98.7 2E-08 4.3E-13 110.6 5.4 63 390-452 821-883 (886)
71 KOG1433|consensus 98.6 3.5E-07 7.7E-12 87.6 11.7 163 193-379 89-259 (326)
72 PF13401 AAA_22: AAA domain; P 98.5 5.6E-07 1.2E-11 75.7 8.4 118 212-374 2-125 (131)
73 COG1121 ZnuC ABC-type Mn/Zn tr 98.5 2.4E-06 5.3E-11 79.0 13.0 180 202-412 18-217 (254)
74 COG4604 CeuD ABC-type enteroch 98.5 2.6E-06 5.6E-11 74.8 12.1 157 203-373 16-194 (252)
75 cd00544 CobU Adenosylcobinamid 98.4 1.7E-06 3.6E-11 76.2 9.9 44 216-263 1-45 (169)
76 COG1120 FepC ABC-type cobalami 98.4 6.7E-06 1.4E-10 76.5 14.2 181 202-413 16-218 (258)
77 PF13479 AAA_24: AAA domain 98.4 5.3E-06 1.1E-10 76.2 12.5 148 215-409 4-174 (213)
78 PRK10867 signal recognition pa 98.4 5.5E-05 1.2E-09 76.3 20.3 58 214-271 100-159 (433)
79 PRK12726 flagellar biosynthesi 98.3 0.0002 4.4E-09 70.2 23.2 42 211-253 203-244 (407)
80 TIGR01618 phage_P_loop phage n 98.3 5.4E-06 1.2E-10 75.8 11.4 149 215-409 13-182 (220)
81 smart00382 AAA ATPases associa 98.3 4.8E-06 1E-10 70.1 9.4 125 213-374 1-125 (148)
82 TIGR00959 ffh signal recogniti 98.2 0.00013 2.7E-09 73.7 19.8 145 214-375 99-250 (428)
83 PF00448 SRP54: SRP54-type pro 98.2 4E-05 8.7E-10 69.2 13.9 38 216-254 3-40 (196)
84 COG1131 CcmA ABC-type multidru 98.1 4.1E-05 8.9E-10 73.8 13.2 178 201-411 18-214 (293)
85 PRK12724 flagellar biosynthesi 98.1 5.8E-05 1.3E-09 75.1 14.2 43 211-253 220-262 (432)
86 PF05621 TniB: Bacterial TniB 98.1 0.0001 2.2E-09 69.9 14.7 117 217-372 64-187 (302)
87 TIGR01425 SRP54_euk signal rec 98.1 0.00038 8.3E-09 69.9 19.4 57 215-272 101-159 (429)
88 PRK00771 signal recognition pa 98.1 0.00068 1.5E-08 68.6 21.1 146 213-376 94-244 (437)
89 COG1136 SalX ABC-type antimicr 98.1 4.9E-05 1.1E-09 69.4 11.5 177 201-409 18-217 (226)
90 cd03115 SRP The signal recogni 98.0 0.00017 3.6E-09 63.9 14.6 46 216-262 2-47 (173)
91 PRK08181 transposase; Validate 98.0 6.4E-05 1.4E-09 71.2 12.5 46 212-262 104-149 (269)
92 COG1124 DppF ABC-type dipeptid 98.0 8.2E-05 1.8E-09 67.8 12.4 178 202-411 21-219 (252)
93 PRK05800 cobU adenosylcobinami 98.0 6.1E-05 1.3E-09 66.4 11.4 152 215-408 2-162 (170)
94 PRK10416 signal recognition pa 98.0 0.00078 1.7E-08 65.5 20.0 41 212-253 112-152 (318)
95 KOG2859|consensus 98.0 0.00015 3.2E-09 64.5 13.2 152 213-374 37-209 (293)
96 PRK14722 flhF flagellar biosyn 98.0 0.00011 2.5E-09 72.4 13.8 90 211-308 134-227 (374)
97 PRK12377 putative replication 98.0 6.8E-05 1.5E-09 70.1 11.4 37 215-252 102-138 (248)
98 COG0541 Ffh Signal recognition 98.0 0.00065 1.4E-08 67.0 17.8 146 212-376 98-251 (451)
99 PRK11889 flhF flagellar biosyn 97.9 0.00023 5E-09 70.1 14.4 40 214-254 241-280 (436)
100 PRK05703 flhF flagellar biosyn 97.9 0.00012 2.7E-09 74.0 13.0 43 212-254 219-262 (424)
101 cd03293 ABC_NrtD_SsuB_transpor 97.9 0.00034 7.4E-09 64.5 14.8 167 203-408 19-206 (220)
102 PRK07952 DNA replication prote 97.9 0.00012 2.5E-09 68.4 11.3 107 216-377 101-207 (244)
103 cd03259 ABC_Carb_Solutes_like 97.9 0.00039 8.5E-09 63.7 14.8 59 325-409 148-206 (213)
104 cd03301 ABC_MalK_N The N-termi 97.9 0.00033 7.2E-09 64.2 14.2 166 203-409 15-206 (213)
105 TIGR01277 thiQ thiamine ABC tr 97.9 0.00044 9.4E-09 63.5 14.8 172 209-410 19-205 (213)
106 PRK13634 cbiO cobalt transport 97.9 7.9E-05 1.7E-09 71.9 10.2 176 202-410 21-222 (290)
107 cd03298 ABC_ThiQ_thiamine_tran 97.9 0.00035 7.6E-09 64.0 13.9 59 325-409 146-204 (211)
108 cd03256 ABC_PhnC_transporter A 97.9 0.00042 9.1E-09 64.8 14.7 36 203-238 16-51 (241)
109 cd03261 ABC_Org_Solvent_Resist 97.9 0.00048 1E-08 64.2 14.7 176 203-410 15-213 (235)
110 PF13173 AAA_14: AAA domain 97.9 0.00013 2.9E-09 61.1 9.9 41 214-256 2-42 (128)
111 cd00009 AAA The AAA+ (ATPases 97.9 0.00018 3.9E-09 60.9 11.0 40 213-253 18-57 (151)
112 PF01695 IstB_IS21: IstB-like 97.9 0.00016 3.5E-09 64.3 10.9 45 213-262 46-90 (178)
113 TIGR00064 ftsY signal recognit 97.8 0.00027 5.9E-09 67.3 13.0 40 213-253 71-110 (272)
114 PRK06921 hypothetical protein; 97.8 0.00026 5.6E-09 67.2 12.8 38 214-251 117-154 (266)
115 TIGR02770 nickel_nikD nickel i 97.8 0.00051 1.1E-08 63.8 14.6 60 325-410 143-202 (230)
116 PRK14974 cell division protein 97.8 0.00041 8.8E-09 67.8 14.3 41 213-254 139-179 (336)
117 TIGR00960 3a0501s02 Type II (G 97.8 0.00047 1E-08 63.4 14.1 35 203-237 18-52 (216)
118 cd03258 ABC_MetN_methionine_tr 97.8 0.00057 1.2E-08 63.6 14.8 173 203-410 20-217 (233)
119 cd03265 ABC_DrrA DrrA is the A 97.8 0.00051 1.1E-08 63.4 14.2 175 203-410 15-208 (220)
120 PRK12727 flagellar biosynthesi 97.8 0.0011 2.3E-08 67.9 17.5 91 211-308 347-440 (559)
121 COG1126 GlnQ ABC-type polar am 97.8 0.00031 6.7E-09 62.9 11.8 176 201-410 15-212 (240)
122 cd03219 ABC_Mj1267_LivG_branch 97.8 0.00083 1.8E-08 62.6 15.4 35 203-237 15-49 (236)
123 PRK06526 transposase; Provisio 97.8 0.00023 5.1E-09 66.9 11.6 46 212-262 96-141 (254)
124 PRK13537 nodulation ABC transp 97.8 0.00052 1.1E-08 66.7 14.2 37 202-238 21-57 (306)
125 PRK11248 tauB taurine transpor 97.8 0.00073 1.6E-08 63.9 14.7 168 203-409 16-204 (255)
126 PRK11308 dppF dipeptide transp 97.8 0.0006 1.3E-08 66.8 14.5 181 202-410 29-231 (327)
127 cd03214 ABC_Iron-Siderophores_ 97.8 0.00025 5.3E-09 63.3 10.9 153 203-409 14-173 (180)
128 TIGR01188 drrA daunorubicin re 97.8 0.00049 1.1E-08 66.8 13.7 35 203-237 8-42 (302)
129 PRK11153 metN DL-methionine tr 97.8 0.00066 1.4E-08 67.1 14.7 164 202-375 19-201 (343)
130 PF00004 AAA: ATPase family as 97.8 5.3E-05 1.1E-09 63.4 6.1 32 217-252 1-32 (132)
131 COG3854 SpoIIIAA ncharacterize 97.8 0.00025 5.4E-09 63.9 10.4 132 211-393 133-269 (308)
132 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.8 0.00058 1.3E-08 62.9 13.5 36 203-238 19-54 (218)
133 cd03237 ABC_RNaseL_inhibitor_d 97.8 0.00089 1.9E-08 62.9 14.8 164 204-409 15-191 (246)
134 PF00308 Bac_DnaA: Bacterial d 97.8 0.0005 1.1E-08 63.4 12.9 104 216-375 36-140 (219)
135 PRK08727 hypothetical protein; 97.8 0.00028 6.1E-09 65.7 11.3 36 215-251 42-77 (233)
136 COG3638 ABC-type phosphate/pho 97.7 0.00038 8.3E-09 63.2 11.4 166 196-374 12-207 (258)
137 PRK10771 thiQ thiamine transpo 97.7 0.0005 1.1E-08 64.0 12.9 172 209-410 20-206 (232)
138 PRK10584 putative ABC transpor 97.7 0.00062 1.4E-08 63.1 13.5 36 203-238 25-60 (228)
139 TIGR03499 FlhF flagellar biosy 97.7 0.00023 5.1E-09 68.2 10.9 42 212-253 192-234 (282)
140 cd03300 ABC_PotA_N PotA is an 97.7 0.0013 2.8E-08 61.2 15.7 176 203-410 15-207 (232)
141 cd03226 ABC_cobalt_CbiO_domain 97.7 0.00063 1.4E-08 62.0 13.3 35 203-237 15-49 (205)
142 cd03267 ABC_NatA_like Similar 97.7 0.00072 1.6E-08 63.1 13.9 35 203-237 36-70 (236)
143 PRK10575 iron-hydroxamate tran 97.7 0.00043 9.3E-09 65.8 12.5 35 203-237 26-60 (265)
144 cd03262 ABC_HisP_GlnQ_permease 97.7 0.0011 2.3E-08 60.8 14.8 36 203-238 15-50 (213)
145 PRK00411 cdc6 cell division co 97.7 0.0005 1.1E-08 69.3 13.6 92 216-338 57-151 (394)
146 cd03235 ABC_Metallic_Cations A 97.7 0.00066 1.4E-08 62.3 13.2 35 203-237 14-48 (213)
147 COG1122 CbiO ABC-type cobalt t 97.7 0.00015 3.3E-09 67.2 8.9 180 201-410 17-215 (235)
148 cd03294 ABC_Pro_Gly_Bertaine T 97.7 0.0011 2.3E-08 63.2 15.0 176 203-410 39-237 (269)
149 PRK13652 cbiO cobalt transport 97.7 0.00077 1.7E-08 64.6 14.0 177 203-410 19-214 (277)
150 cd03296 ABC_CysA_sulfate_impor 97.7 0.00043 9.3E-09 64.8 12.0 36 203-238 17-52 (239)
151 TIGR02315 ABC_phnC phosphonate 97.7 0.00095 2.1E-08 62.5 14.4 35 203-237 17-51 (243)
152 PRK15112 antimicrobial peptide 97.7 0.0011 2.4E-08 63.1 14.9 181 202-410 27-226 (267)
153 TIGR01184 ntrCD nitrate transp 97.7 0.0011 2.4E-08 61.6 14.6 60 325-410 132-191 (230)
154 PRK13646 cbiO cobalt transport 97.7 0.0002 4.4E-09 68.9 9.9 37 202-238 21-57 (286)
155 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.7 0.00065 1.4E-08 62.9 13.0 36 203-238 37-72 (224)
156 PRK13536 nodulation factor exp 97.7 0.00089 1.9E-08 66.0 14.6 37 202-238 55-91 (340)
157 PRK06731 flhF flagellar biosyn 97.7 0.001 2.2E-08 63.1 14.2 41 213-254 74-114 (270)
158 cd03295 ABC_OpuCA_Osmoprotecti 97.7 0.0011 2.4E-08 62.1 14.5 176 203-410 16-212 (242)
159 PRK08116 hypothetical protein; 97.7 0.00079 1.7E-08 64.0 13.6 35 216-251 116-150 (268)
160 PRK09544 znuC high-affinity zi 97.7 0.0006 1.3E-08 64.3 12.7 151 203-375 19-181 (251)
161 TIGR02769 nickel_nikE nickel i 97.7 0.0015 3.3E-08 62.1 15.5 177 203-410 26-227 (265)
162 PRK13636 cbiO cobalt transport 97.7 0.00044 9.5E-09 66.5 11.9 178 202-410 20-218 (283)
163 cd03292 ABC_FtsE_transporter F 97.7 0.00094 2E-08 61.2 13.7 36 203-238 16-51 (214)
164 cd03269 ABC_putative_ATPase Th 97.7 0.00095 2.1E-08 61.0 13.7 35 203-237 15-49 (210)
165 PRK11247 ssuB aliphatic sulfon 97.7 0.0012 2.5E-08 62.5 14.5 174 203-410 27-210 (257)
166 COG4107 PhnK ABC-type phosphon 97.7 0.0015 3.3E-08 56.4 13.5 153 210-373 28-210 (258)
167 PRK11629 lolD lipoprotein tran 97.7 0.0011 2.3E-08 61.8 14.0 35 203-237 24-58 (233)
168 PRK09536 btuD corrinoid ABC tr 97.7 0.00056 1.2E-08 68.7 12.8 162 202-374 17-198 (402)
169 TIGR03864 PQQ_ABC_ATP ABC tran 97.7 0.00089 1.9E-08 62.5 13.5 36 203-238 16-51 (236)
170 PRK13645 cbiO cobalt transport 97.7 0.00075 1.6E-08 65.0 13.3 36 203-238 26-61 (289)
171 cd03266 ABC_NatA_sodium_export 97.7 0.0011 2.3E-08 61.1 13.8 36 203-238 20-55 (218)
172 TIGR02211 LolD_lipo_ex lipopro 97.7 0.001 2.2E-08 61.3 13.5 36 203-238 20-55 (221)
173 PRK11650 ugpC glycerol-3-phosp 97.7 0.0011 2.4E-08 65.7 14.5 159 202-376 18-196 (356)
174 PRK10419 nikE nickel transport 97.7 0.002 4.2E-08 61.4 15.6 35 203-237 27-61 (268)
175 cd03225 ABC_cobalt_CbiO_domain 97.6 0.0007 1.5E-08 61.9 12.1 36 203-238 16-51 (211)
176 TIGR02673 FtsE cell division A 97.6 0.0015 3.2E-08 60.0 14.2 35 203-237 17-51 (214)
177 PRK06835 DNA replication prote 97.6 0.00053 1.1E-08 67.0 11.7 37 215-252 184-220 (329)
178 PRK11432 fbpC ferric transport 97.6 0.0015 3.3E-08 64.6 15.0 159 202-376 20-198 (351)
179 cd03218 ABC_YhbG The ABC trans 97.6 0.0018 3.9E-08 60.2 14.8 35 203-237 15-49 (232)
180 COG4619 ABC-type uncharacteriz 97.6 0.0016 3.5E-08 56.0 12.9 162 198-375 13-194 (223)
181 COG1123 ATPase components of v 97.6 0.0022 4.9E-08 65.7 16.3 181 202-411 23-232 (539)
182 cd03232 ABC_PDR_domain2 The pl 97.6 0.0014 3.1E-08 59.0 13.6 34 203-236 22-55 (192)
183 cd03257 ABC_NikE_OppD_transpor 97.6 0.0019 4.1E-08 59.8 14.8 36 203-238 20-55 (228)
184 PF08433 KTI12: Chromatin asso 97.6 0.00045 9.7E-09 65.5 10.6 101 216-372 3-104 (270)
185 PRK14250 phosphate ABC transpo 97.6 0.0017 3.7E-08 60.8 14.5 176 203-410 18-208 (241)
186 COG1419 FlhF Flagellar GTP-bin 97.6 0.0016 3.4E-08 64.2 14.5 42 212-253 201-243 (407)
187 PRK11831 putative ABC transpor 97.6 0.002 4.3E-08 61.4 15.1 36 203-238 22-57 (269)
188 TIGR03005 ectoine_ehuA ectoine 97.6 0.0014 3E-08 61.8 13.9 36 203-238 15-50 (252)
189 PRK12723 flagellar biosynthesi 97.6 0.00098 2.1E-08 66.4 13.3 88 214-308 174-266 (388)
190 PRK09473 oppD oligopeptide tra 97.6 0.0021 4.6E-08 63.1 15.6 181 202-410 30-238 (330)
191 PRK10908 cell division protein 97.6 0.0016 3.6E-08 60.0 14.1 36 203-238 17-52 (222)
192 PRK11264 putative amino-acid A 97.6 0.0022 4.7E-08 60.4 15.2 35 203-237 18-52 (250)
193 TIGR02982 heterocyst_DevA ABC 97.6 0.0015 3.1E-08 60.3 13.7 35 203-237 20-54 (220)
194 PRK08939 primosomal protein Dn 97.6 0.00079 1.7E-08 65.2 12.3 42 216-262 158-199 (306)
195 PRK13637 cbiO cobalt transport 97.6 0.00087 1.9E-08 64.5 12.5 176 202-410 21-221 (287)
196 TIGR03771 anch_rpt_ABC anchore 97.6 0.0016 3.6E-08 60.1 13.9 28 211-238 3-30 (223)
197 KOG0061|consensus 97.6 0.00038 8.3E-09 73.8 10.9 160 203-374 45-230 (613)
198 PRK11000 maltose/maltodextrin 97.6 0.0016 3.5E-08 65.0 14.7 35 203-237 18-52 (369)
199 TIGR02314 ABC_MetN D-methionin 97.6 0.0014 3E-08 64.6 13.9 160 202-374 19-200 (343)
200 PRK10253 iron-enterobactin tra 97.6 0.00076 1.6E-08 64.1 11.8 36 203-238 22-57 (265)
201 PRK10070 glycine betaine trans 97.6 0.0021 4.5E-08 64.6 15.4 160 203-375 43-225 (400)
202 COG1435 Tdk Thymidine kinase [ 97.6 0.00029 6.4E-09 62.1 8.1 140 212-405 2-141 (201)
203 TIGR03018 pepcterm_TyrKin exop 97.6 0.00046 1E-08 63.0 9.9 109 216-334 38-157 (207)
204 PRK13548 hmuV hemin importer A 97.6 0.0021 4.5E-08 60.9 14.6 36 203-238 17-52 (258)
205 PRK10418 nikD nickel transport 97.6 0.00058 1.3E-08 64.5 10.8 35 203-237 18-52 (254)
206 PRK13651 cobalt transporter AT 97.6 0.00081 1.8E-08 65.3 11.8 37 202-238 21-57 (305)
207 TIGR01166 cbiO cobalt transpor 97.6 0.00084 1.8E-08 60.4 11.2 35 203-237 7-41 (190)
208 TIGR00968 3a0106s01 sulfate AB 97.6 0.0017 3.8E-08 60.6 13.7 178 203-410 15-207 (237)
209 PRK11300 livG leucine/isoleuci 97.6 0.00076 1.6E-08 63.7 11.3 35 203-237 20-54 (255)
210 PRK08084 DNA replication initi 97.6 0.00069 1.5E-08 63.2 10.8 37 215-252 46-82 (235)
211 PRK10619 histidine/lysine/argi 97.6 0.0029 6.3E-08 59.8 15.2 36 203-238 20-55 (257)
212 PRK10851 sulfate/thiosulfate t 97.5 0.00098 2.1E-08 66.0 12.3 37 202-238 16-52 (353)
213 PRK13641 cbiO cobalt transport 97.5 0.00049 1.1E-08 66.2 10.0 36 202-237 21-56 (287)
214 PRK09984 phosphonate/organopho 97.5 0.0023 5E-08 60.7 14.5 36 203-238 19-54 (262)
215 PRK11022 dppD dipeptide transp 97.5 0.0029 6.4E-08 62.0 15.5 181 202-409 21-229 (326)
216 TIGR03265 PhnT2 putative 2-ami 97.5 0.0021 4.7E-08 63.6 14.7 159 202-376 18-196 (353)
217 PRK14086 dnaA chromosomal repl 97.5 0.00048 1E-08 71.9 10.4 38 216-253 316-354 (617)
218 cd03297 ABC_ModC_molybdenum_tr 97.5 0.0026 5.6E-08 58.4 14.3 59 325-409 149-207 (214)
219 PF02492 cobW: CobW/HypB/UreG, 97.5 0.00053 1.1E-08 61.1 9.4 61 216-279 2-62 (178)
220 PF00270 DEAD: DEAD/DEAH box h 97.5 0.0015 3.1E-08 57.2 12.1 143 214-374 14-161 (169)
221 PRK09493 glnQ glutamine ABC tr 97.5 0.0026 5.5E-08 59.5 14.5 36 203-238 16-51 (240)
222 PRK14723 flhF flagellar biosyn 97.5 0.0039 8.4E-08 66.8 17.2 117 211-334 182-304 (767)
223 PRK13635 cbiO cobalt transport 97.5 0.0006 1.3E-08 65.4 10.4 159 203-374 22-200 (279)
224 PRK13633 cobalt transporter AT 97.5 0.00072 1.6E-08 64.9 10.7 161 203-375 25-205 (280)
225 cd03213 ABCG_EPDR ABCG transpo 97.5 0.0024 5.2E-08 57.7 13.6 160 203-409 24-187 (194)
226 TIGR03608 L_ocin_972_ABC putat 97.5 0.0011 2.5E-08 60.3 11.6 36 203-238 13-48 (206)
227 TIGR01288 nodI ATP-binding ABC 97.5 0.0022 4.8E-08 62.3 14.2 36 203-238 19-54 (303)
228 TIGR03740 galliderm_ABC gallid 97.5 0.0022 4.8E-08 59.2 13.7 35 203-237 15-49 (223)
229 PRK11701 phnK phosphonate C-P 97.5 0.0018 3.9E-08 61.3 13.3 36 203-238 21-56 (258)
230 PF05729 NACHT: NACHT domain 97.5 0.00056 1.2E-08 59.6 9.2 26 216-241 2-27 (166)
231 cd03299 ABC_ModC_like Archeal 97.5 0.0027 5.8E-08 59.2 14.3 34 204-237 15-48 (235)
232 PRK13546 teichoic acids export 97.5 0.0015 3.2E-08 62.0 12.7 38 201-238 37-74 (264)
233 PF13245 AAA_19: Part of AAA d 97.5 0.00018 4E-09 54.2 5.1 42 213-254 9-53 (76)
234 PRK13647 cbiO cobalt transport 97.5 0.00073 1.6E-08 64.6 10.6 35 203-237 20-54 (274)
235 PRK13768 GTPase; Provisional 97.5 0.0016 3.4E-08 61.5 12.7 39 216-255 4-42 (253)
236 COG1127 Ttg2A ABC-type transpo 97.5 0.0015 3.3E-08 59.6 11.8 176 204-411 24-223 (263)
237 PRK05642 DNA replication initi 97.5 0.00099 2.1E-08 62.1 11.1 37 215-252 46-82 (234)
238 TIGR03873 F420-0_ABC_ATP propo 97.5 0.0011 2.4E-08 62.7 11.6 36 203-238 16-51 (256)
239 TIGR03258 PhnT 2-aminoethylpho 97.5 0.0027 6E-08 63.0 14.8 35 203-237 20-54 (362)
240 TIGR03522 GldA_ABC_ATP gliding 97.5 0.0019 4.1E-08 62.7 13.4 35 203-237 17-51 (301)
241 TIGR02142 modC_ABC molybdenum 97.5 0.0031 6.8E-08 62.6 15.3 28 210-237 19-46 (354)
242 PRK11607 potG putrescine trans 97.5 0.0026 5.7E-08 63.5 14.7 36 202-237 33-68 (377)
243 TIGR03575 selen_PSTK_euk L-ser 97.5 0.0036 7.7E-08 61.2 15.1 39 216-254 1-39 (340)
244 cd03260 ABC_PstB_phosphate_tra 97.5 0.0053 1.2E-07 56.8 15.8 36 203-238 15-50 (227)
245 cd03224 ABC_TM1139_LivF_branch 97.5 0.003 6.4E-08 58.3 14.1 35 203-237 15-49 (222)
246 PRK06893 DNA replication initi 97.5 0.0011 2.4E-08 61.5 11.1 36 216-252 41-76 (229)
247 cd03229 ABC_Class3 This class 97.5 0.0012 2.6E-08 58.8 10.9 155 203-408 15-175 (178)
248 PRK10938 putative molybdenum t 97.5 0.0017 3.6E-08 67.6 13.6 158 203-375 18-195 (490)
249 PRK10895 lipopolysaccharide AB 97.5 0.0026 5.6E-08 59.5 13.7 36 203-238 18-53 (241)
250 cd03234 ABCG_White The White s 97.5 0.0063 1.4E-07 56.3 16.1 36 203-238 22-57 (226)
251 COG4559 ABC-type hemin transpo 97.5 0.005 1.1E-07 55.1 14.3 185 199-411 12-218 (259)
252 cd03268 ABC_BcrA_bacitracin_re 97.5 0.0024 5.2E-08 58.3 13.0 37 202-238 14-50 (208)
253 PRK13650 cbiO cobalt transport 97.5 0.0004 8.7E-09 66.6 8.2 158 203-374 22-200 (279)
254 cd01133 F1-ATPase_beta F1 ATP 97.5 0.0023 5.1E-08 60.4 13.0 65 195-260 51-115 (274)
255 COG0410 LivF ABC-type branched 97.5 0.00039 8.5E-09 62.9 7.4 154 210-376 25-198 (237)
256 cd00046 DEXDc DEAD-like helica 97.5 0.0014 3E-08 54.7 10.6 39 216-254 2-41 (144)
257 PF09848 DUF2075: Uncharacteri 97.5 0.0013 2.7E-08 65.4 11.9 135 215-368 2-153 (352)
258 KOG0744|consensus 97.4 0.00053 1.2E-08 64.8 8.3 124 215-377 178-309 (423)
259 KOG0780|consensus 97.4 0.032 6.9E-07 54.4 20.3 43 210-253 97-139 (483)
260 TIGR03410 urea_trans_UrtE urea 97.4 0.0015 3.3E-08 60.6 11.5 36 203-238 15-50 (230)
261 COG2401 ABC-type ATPase fused 97.4 0.0005 1.1E-08 67.2 8.3 143 203-373 398-566 (593)
262 PRK13648 cbiO cobalt transport 97.4 0.0012 2.5E-08 63.0 11.0 36 203-238 24-59 (269)
263 PRK10247 putative ABC transpor 97.4 0.0039 8.6E-08 57.7 14.2 173 203-409 22-212 (225)
264 TIGR02323 CP_lyasePhnK phospho 97.4 0.0029 6.3E-08 59.7 13.5 36 203-238 18-53 (253)
265 PRK11231 fecE iron-dicitrate t 97.4 0.0019 4E-08 61.1 12.1 35 203-237 17-51 (255)
266 PRK13639 cbiO cobalt transport 97.4 0.0012 2.7E-08 63.1 11.0 35 203-237 17-51 (275)
267 cd03263 ABC_subfamily_A The AB 97.4 0.0035 7.5E-08 57.7 13.7 36 203-238 17-52 (220)
268 COG1618 Predicted nucleotide k 97.4 0.00093 2E-08 57.0 8.7 141 217-395 8-153 (179)
269 PRK09452 potA putrescine/sperm 97.4 0.0032 7E-08 62.8 14.2 159 203-377 29-207 (375)
270 TIGR00362 DnaA chromosomal rep 97.4 0.0013 2.8E-08 66.6 11.6 38 215-252 137-175 (405)
271 PRK13638 cbiO cobalt transport 97.4 0.0035 7.7E-08 59.8 14.0 35 203-237 16-50 (271)
272 PRK11144 modC molybdate transp 97.4 0.0018 4E-08 64.2 12.3 28 210-237 20-47 (352)
273 TIGR03411 urea_trans_UrtD urea 97.4 0.002 4.3E-08 60.3 11.9 36 203-238 17-52 (242)
274 TIGR01189 ccmA heme ABC export 97.4 0.0025 5.4E-08 57.7 12.1 36 203-238 15-50 (198)
275 PRK13547 hmuV hemin importer A 97.4 0.0023 5.1E-08 61.0 12.4 36 203-238 16-51 (272)
276 COG0411 LivG ABC-type branched 97.4 0.00074 1.6E-08 61.7 8.3 182 199-411 15-227 (250)
277 PRK06995 flhF flagellar biosyn 97.4 0.016 3.4E-07 59.4 18.8 92 211-309 253-347 (484)
278 PRK12422 chromosomal replicati 97.4 0.0011 2.3E-08 67.7 10.5 36 216-252 143-178 (445)
279 PRK15079 oligopeptide ABC tran 97.4 0.0027 5.9E-08 62.3 13.1 164 201-374 34-221 (331)
280 TIGR00750 lao LAO/AO transport 97.4 0.00087 1.9E-08 64.9 9.5 44 210-254 30-73 (300)
281 PRK15134 microcin C ABC transp 97.4 0.0044 9.6E-08 65.1 15.4 37 202-238 23-59 (529)
282 PRK13649 cbiO cobalt transport 97.4 0.005 1.1E-07 59.0 14.6 35 203-237 22-56 (280)
283 PRK13632 cbiO cobalt transport 97.4 0.0028 6.1E-08 60.4 12.7 35 203-237 24-58 (271)
284 PRK13540 cytochrome c biogenes 97.4 0.0036 7.8E-08 56.8 12.8 36 203-238 16-51 (200)
285 COG3842 PotA ABC-type spermidi 97.4 0.00046 9.9E-09 67.4 7.2 165 200-376 17-198 (352)
286 PRK14087 dnaA chromosomal repl 97.4 0.0019 4.1E-08 66.1 12.0 38 216-253 143-181 (450)
287 COG1110 Reverse gyrase [DNA re 97.4 0.00084 1.8E-08 72.2 9.6 123 208-339 91-217 (1187)
288 COG1123 ATPase components of v 97.4 0.0028 6.2E-08 64.9 13.1 182 201-412 304-508 (539)
289 cd03222 ABC_RNaseL_inhibitor T 97.4 0.0014 3E-08 58.2 9.7 29 210-238 21-49 (177)
290 PRK09376 rho transcription ter 97.4 0.0023 5.1E-08 63.1 12.0 44 197-241 153-196 (416)
291 cd03233 ABC_PDR_domain1 The pl 97.4 0.0023 4.9E-08 58.2 11.4 36 203-238 22-57 (202)
292 PRK13640 cbiO cobalt transport 97.4 0.0011 2.4E-08 63.6 9.7 161 203-374 22-203 (282)
293 PRK10261 glutathione transport 97.3 0.0043 9.3E-08 66.4 14.9 37 202-238 30-66 (623)
294 cd03236 ABC_RNaseL_inhibitor_d 97.3 0.0044 9.5E-08 58.5 13.3 35 203-238 16-50 (255)
295 cd01131 PilT Pilus retraction 97.3 0.0015 3.2E-08 59.2 9.7 39 216-256 3-41 (198)
296 TIGR02928 orc1/cdc6 family rep 97.3 0.0022 4.8E-08 63.9 11.9 51 216-266 42-99 (365)
297 PRK11614 livF leucine/isoleuci 97.3 0.0016 3.4E-08 60.8 10.1 35 203-237 20-54 (237)
298 PRK13642 cbiO cobalt transport 97.3 0.0012 2.5E-08 63.3 9.4 36 203-238 22-57 (277)
299 cd03283 ABC_MutS-like MutS-lik 97.3 0.0016 3.4E-08 59.1 9.7 28 211-238 22-49 (199)
300 PRK13643 cbiO cobalt transport 97.3 0.0012 2.6E-08 63.6 9.5 36 203-238 21-56 (288)
301 cd03216 ABC_Carb_Monos_I This 97.3 0.00064 1.4E-08 59.6 6.9 36 203-238 15-50 (163)
302 cd03227 ABC_Class2 ABC-type Cl 97.3 0.0033 7.2E-08 55.0 11.4 31 211-241 18-48 (162)
303 PRK10762 D-ribose transporter 97.3 0.0027 5.9E-08 66.2 12.7 37 202-238 18-54 (501)
304 COG2884 FtsE Predicted ATPase 97.3 0.0041 8.8E-08 54.8 11.4 163 196-375 10-197 (223)
305 PRK00149 dnaA chromosomal repl 97.3 0.0021 4.6E-08 66.0 11.6 38 215-252 149-187 (450)
306 PRK15439 autoinducer 2 ABC tra 97.3 0.0017 3.8E-08 67.8 11.2 35 203-237 26-60 (510)
307 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.3 0.0018 4E-08 55.4 9.4 36 203-238 15-50 (144)
308 TIGR03269 met_CoM_red_A2 methy 97.3 0.008 1.7E-07 63.0 16.1 36 203-238 15-50 (520)
309 cd03238 ABC_UvrA The excision 97.3 0.0061 1.3E-07 54.1 12.9 32 203-234 10-41 (176)
310 PRK13545 tagH teichoic acids e 97.3 0.0033 7.2E-08 64.6 12.6 36 203-238 39-74 (549)
311 COG4088 Predicted nucleotide k 97.3 0.0029 6.2E-08 56.3 10.4 33 216-249 3-35 (261)
312 TIGR00972 3a0107s01c2 phosphat 97.3 0.0099 2.1E-07 55.8 15.1 35 203-237 16-50 (247)
313 PRK14258 phosphate ABC transpo 97.3 0.014 3.1E-07 55.3 16.1 36 203-238 22-57 (261)
314 PRK11124 artP arginine transpo 97.3 0.0059 1.3E-07 57.1 13.4 36 203-238 17-52 (242)
315 PRK13631 cbiO cobalt transport 97.3 0.0021 4.4E-08 62.9 10.5 37 202-238 40-76 (320)
316 COG4608 AppF ABC-type oligopep 97.3 0.003 6.5E-08 58.9 10.9 130 201-333 26-168 (268)
317 COG3839 MalK ABC-type sugar tr 97.3 0.003 6.5E-08 61.4 11.4 128 203-331 18-190 (338)
318 COG1116 TauB ABC-type nitrate/ 97.3 0.0059 1.3E-07 56.2 12.6 172 201-409 16-206 (248)
319 KOG0734|consensus 97.3 0.0022 4.9E-08 64.5 10.6 30 206-237 331-360 (752)
320 PF13671 AAA_33: AAA domain; P 97.3 0.0039 8.4E-08 53.0 11.0 22 216-237 1-22 (143)
321 PRK13543 cytochrome c biogenes 97.2 0.0062 1.3E-07 55.9 13.1 36 203-238 26-61 (214)
322 TIGR00955 3a01204 The Eye Pigm 97.2 0.0031 6.7E-08 67.4 12.5 37 202-238 39-75 (617)
323 PRK15093 antimicrobial peptide 97.2 0.0048 1E-07 60.6 12.9 36 202-237 21-56 (330)
324 TIGR01420 pilT_fam pilus retra 97.2 0.002 4.3E-08 63.7 10.2 43 212-256 120-162 (343)
325 PRK13539 cytochrome c biogenes 97.2 0.0024 5.2E-08 58.3 10.1 35 203-237 17-51 (207)
326 cd03230 ABC_DR_subfamily_A Thi 97.2 0.0034 7.4E-08 55.5 10.8 36 203-238 15-50 (173)
327 cd03223 ABCD_peroxisomal_ALDP 97.2 0.0044 9.5E-08 54.4 11.3 36 203-238 16-51 (166)
328 COG0444 DppD ABC-type dipeptid 97.2 0.0028 6E-08 60.5 10.3 184 201-411 18-231 (316)
329 COG1117 PstB ABC-type phosphat 97.2 0.0068 1.5E-07 54.4 12.1 158 200-374 19-207 (253)
330 PRK06762 hypothetical protein; 97.2 0.006 1.3E-07 53.4 12.1 33 215-251 3-35 (166)
331 PRK13538 cytochrome c biogenes 97.2 0.0041 8.9E-08 56.6 11.3 35 203-237 16-50 (204)
332 PRK13409 putative ATPase RIL; 97.2 0.0051 1.1E-07 65.2 13.5 164 204-409 355-529 (590)
333 COG1125 OpuBA ABC-type proline 97.2 0.0065 1.4E-07 56.0 12.1 61 200-262 13-77 (309)
334 cd03217 ABC_FeS_Assembly ABC-t 97.2 0.0021 4.5E-08 58.4 9.2 35 203-237 15-49 (200)
335 cd00561 CobA_CobO_BtuR ATP:cor 97.2 0.0064 1.4E-07 52.7 11.5 143 216-407 4-152 (159)
336 KOG0733|consensus 97.2 0.0013 2.9E-08 67.2 8.2 116 210-377 219-339 (802)
337 PRK03695 vitamin B12-transport 97.2 0.0054 1.2E-07 57.7 12.1 35 203-237 11-45 (248)
338 cd02037 MRP-like MRP (Multiple 97.2 0.0012 2.5E-08 58.3 7.1 39 216-255 2-40 (169)
339 PRK14088 dnaA chromosomal repl 97.2 0.0032 7E-08 64.3 11.3 37 216-252 132-169 (440)
340 cd03231 ABC_CcmA_heme_exporter 97.2 0.0071 1.5E-07 54.9 12.5 36 203-238 15-50 (201)
341 cd00267 ABC_ATPase ABC (ATP-bi 97.2 0.0024 5.2E-08 55.5 9.0 36 203-238 14-49 (157)
342 PF04665 Pox_A32: Poxvirus A32 97.2 0.0016 3.5E-08 60.2 8.2 35 216-252 15-49 (241)
343 PRK10261 glutathione transport 97.2 0.0096 2.1E-07 63.8 15.3 180 203-410 339-540 (623)
344 PF13191 AAA_16: AAA ATPase do 97.2 0.0026 5.6E-08 56.5 9.4 41 213-254 23-63 (185)
345 PTZ00454 26S protease regulato 97.2 0.0032 7E-08 63.2 10.8 29 210-238 175-203 (398)
346 cd03251 ABCC_MsbA MsbA is an e 97.2 0.008 1.7E-07 55.9 12.9 36 203-238 17-52 (234)
347 cd03264 ABC_drug_resistance_li 97.1 0.0085 1.9E-07 54.8 12.8 34 203-237 15-48 (211)
348 cd03215 ABC_Carb_Monos_II This 97.1 0.0034 7.4E-08 56.0 9.9 36 203-238 15-50 (182)
349 PF01637 Arch_ATPase: Archaeal 97.1 0.00048 1E-08 63.6 4.6 141 213-372 19-163 (234)
350 PRK09183 transposase/IS protei 97.1 0.00069 1.5E-08 64.1 5.6 40 211-251 99-138 (259)
351 TIGR01186 proV glycine betaine 97.1 0.0086 1.9E-07 59.4 13.5 161 203-376 8-191 (363)
352 PRK10744 pstB phosphate transp 97.1 0.019 4.2E-07 54.3 15.4 36 203-238 28-63 (260)
353 cd03250 ABCC_MRP_domain1 Domai 97.1 0.0086 1.9E-07 54.4 12.5 36 203-238 20-55 (204)
354 PRK09700 D-allose transporter 97.1 0.0036 7.9E-08 65.4 11.3 36 203-238 20-55 (510)
355 PF09807 DUF2348: Uncharacteri 97.1 0.0072 1.6E-07 56.7 12.1 185 209-409 14-210 (249)
356 PRK15056 manganese/iron transp 97.1 0.0021 4.5E-08 61.4 8.7 35 203-237 22-56 (272)
357 TIGR02324 CP_lyasePhnL phospho 97.1 0.01 2.2E-07 54.8 13.2 36 203-238 23-58 (224)
358 cd01128 rho_factor Transcripti 97.1 0.0036 7.8E-08 58.7 10.1 59 203-262 6-68 (249)
359 PRK15134 microcin C ABC transp 97.1 0.012 2.7E-07 61.7 15.3 175 203-410 301-502 (529)
360 cd03246 ABCC_Protease_Secretio 97.1 0.0029 6.3E-08 56.0 9.0 36 203-238 17-52 (173)
361 PRK13644 cbiO cobalt transport 97.1 0.0043 9.4E-08 59.3 10.8 36 203-238 17-52 (274)
362 TIGR03015 pepcterm_ATPase puta 97.1 0.0013 2.8E-08 62.6 7.1 54 215-270 44-98 (269)
363 PRK00889 adenylylsulfate kinas 97.1 0.00089 1.9E-08 59.3 5.6 40 212-252 2-41 (175)
364 COG1134 TagH ABC-type polysacc 97.1 0.0018 3.8E-08 59.3 7.5 174 199-411 38-224 (249)
365 CHL00195 ycf46 Ycf46; Provisio 97.1 0.0057 1.2E-07 63.0 12.1 38 210-251 255-292 (489)
366 PF13521 AAA_28: AAA domain; P 97.1 0.0026 5.5E-08 55.7 8.3 136 217-372 2-156 (163)
367 PRK14268 phosphate ABC transpo 97.1 0.017 3.7E-07 54.7 14.5 35 203-237 27-61 (258)
368 PHA00729 NTP-binding motif con 97.1 0.00069 1.5E-08 62.0 4.7 43 216-258 19-73 (226)
369 COG3840 ThiQ ABC-type thiamine 97.1 0.005 1.1E-07 53.8 9.6 170 210-411 21-207 (231)
370 TIGR01978 sufC FeS assembly AT 97.1 0.024 5.3E-07 52.9 15.4 35 203-237 15-49 (243)
371 PRK14721 flhF flagellar biosyn 97.1 0.015 3.1E-07 58.6 14.4 102 211-319 188-294 (420)
372 cd03247 ABCC_cytochrome_bd The 97.1 0.0075 1.6E-07 53.6 11.3 140 203-376 17-158 (178)
373 TIGR00767 rho transcription te 97.1 0.0047 1E-07 61.2 10.6 54 209-262 163-220 (415)
374 cd01132 F1_ATPase_alpha F1 ATP 97.1 0.0086 1.9E-07 56.5 11.9 64 194-259 50-113 (274)
375 TIGR03415 ABC_choXWV_ATP choli 97.0 0.013 2.9E-07 58.4 13.9 160 204-376 40-226 (382)
376 PRK14235 phosphate transporter 97.0 0.032 6.9E-07 53.1 16.1 36 203-238 34-69 (267)
377 PRK01172 ski2-like helicase; P 97.0 0.0077 1.7E-07 65.2 13.2 139 211-373 34-177 (674)
378 COG4618 ArpD ABC-type protease 97.0 0.013 2.9E-07 59.0 13.5 29 210-238 358-386 (580)
379 cd03114 ArgK-like The function 97.0 0.0019 4.1E-08 55.6 6.9 37 217-254 2-38 (148)
380 TIGR00347 bioD dethiobiotin sy 97.0 0.012 2.6E-07 51.5 12.1 131 218-375 2-139 (166)
381 COG1245 Predicted ATPase, RNas 97.0 0.0044 9.6E-08 61.5 10.0 128 209-336 362-524 (591)
382 PRK12597 F0F1 ATP synthase sub 97.0 0.012 2.6E-07 59.9 13.4 65 194-259 124-188 (461)
383 COG1474 CDC6 Cdc6-related prot 97.0 0.014 3E-07 57.9 13.7 99 209-341 38-139 (366)
384 PLN03140 ABC transporter G fam 97.0 0.0069 1.5E-07 70.5 13.1 36 202-237 894-929 (1470)
385 PRK06851 hypothetical protein; 97.0 0.0089 1.9E-07 59.0 12.1 50 205-257 207-256 (367)
386 COG3845 ABC-type uncharacteriz 97.0 0.014 3.1E-07 58.6 13.4 160 196-374 13-199 (501)
387 PRK13541 cytochrome c biogenes 97.0 0.0048 1E-07 55.7 9.5 32 207-238 19-50 (195)
388 PF02702 KdpD: Osmosensitive K 97.0 0.008 1.7E-07 53.5 10.4 119 213-372 3-123 (211)
389 cd02027 APSK Adenosine 5'-phos 97.0 0.0038 8.2E-08 53.8 8.3 37 216-253 1-37 (149)
390 TIGR01007 eps_fam capsular exo 97.0 0.0047 1E-07 56.2 9.4 42 214-256 18-59 (204)
391 TIGR00708 cobA cob(I)alamin ad 97.0 0.0089 1.9E-07 52.5 10.6 144 213-409 5-156 (173)
392 PRK10982 galactose/methyl gala 97.0 0.0055 1.2E-07 63.8 11.0 35 203-237 13-47 (491)
393 PRK11288 araG L-arabinose tran 97.0 0.0045 9.7E-08 64.6 10.4 36 203-238 19-54 (501)
394 PF13614 AAA_31: AAA domain; P 97.0 0.0014 3.1E-08 56.7 5.6 45 216-261 3-47 (157)
395 PRK14267 phosphate ABC transpo 97.0 0.018 3.9E-07 54.3 13.4 35 203-237 19-53 (253)
396 PRK15439 autoinducer 2 ABC tra 96.9 0.0053 1.1E-07 64.2 10.6 34 204-237 279-312 (510)
397 COG1484 DnaC DNA replication p 96.9 0.0012 2.5E-08 62.3 5.1 46 213-263 104-149 (254)
398 PF13207 AAA_17: AAA domain; P 96.9 0.0012 2.7E-08 54.4 4.7 23 216-238 1-23 (121)
399 CHL00131 ycf16 sulfate ABC tra 96.9 0.0053 1.1E-07 57.8 9.6 34 203-236 22-55 (252)
400 PRK14259 phosphate ABC transpo 96.9 0.027 5.9E-07 53.6 14.6 35 203-237 28-62 (269)
401 PTZ00112 origin recognition co 96.9 0.015 3.2E-07 62.8 13.5 56 210-265 777-840 (1164)
402 PRK15177 Vi polysaccharide exp 96.9 0.019 4.2E-07 52.6 13.0 35 204-238 3-37 (213)
403 smart00766 DnaG_DnaB_bind DNA 96.9 0.0019 4.1E-08 53.1 5.8 98 22-126 1-104 (125)
404 KOG0736|consensus 96.9 0.013 2.8E-07 61.7 12.8 118 207-376 698-820 (953)
405 PLN00020 ribulose bisphosphate 96.9 0.0087 1.9E-07 58.5 10.9 37 210-250 144-180 (413)
406 COG2805 PilT Tfp pilus assembl 96.9 0.0034 7.4E-08 59.1 7.6 66 195-262 99-171 (353)
407 TIGR01039 atpD ATP synthase, F 96.9 0.019 4.2E-07 58.1 13.5 64 194-258 124-187 (461)
408 PRK09280 F0F1 ATP synthase sub 96.9 0.0097 2.1E-07 60.3 11.4 63 195-258 126-188 (463)
409 PRK13549 xylose transporter AT 96.9 0.0072 1.6E-07 63.1 10.9 36 203-238 20-55 (506)
410 PRK03846 adenylylsulfate kinas 96.9 0.0066 1.4E-07 55.0 9.3 41 212-253 22-62 (198)
411 COG1204 Superfamily II helicas 96.9 0.0059 1.3E-07 66.2 10.3 147 209-375 42-190 (766)
412 PRK10762 D-ribose transporter 96.9 0.0089 1.9E-07 62.3 11.5 34 204-237 268-301 (501)
413 COG4674 Uncharacterized ABC-ty 96.9 0.0021 4.6E-08 56.7 5.6 65 199-264 16-84 (249)
414 COG1224 TIP49 DNA helicase TIP 96.8 0.0024 5.2E-08 61.3 6.3 59 211-271 62-126 (450)
415 cd03252 ABCC_Hemolysin The ABC 96.8 0.0095 2.1E-07 55.5 10.4 36 203-238 17-52 (237)
416 TIGR02633 xylG D-xylose ABC tr 96.8 0.013 2.7E-07 61.2 12.3 35 203-237 16-50 (500)
417 PRK09580 sufC cysteine desulfu 96.8 0.024 5.2E-07 53.2 13.2 35 203-237 16-50 (248)
418 TIGR03689 pup_AAA proteasome A 96.8 0.0059 1.3E-07 62.9 9.6 30 210-239 212-241 (512)
419 PLN03140 ABC transporter G fam 96.8 0.012 2.6E-07 68.6 13.1 40 199-238 176-215 (1470)
420 PRK13409 putative ATPase RIL; 96.8 0.0074 1.6E-07 64.0 10.6 34 204-238 90-123 (590)
421 TIGR03305 alt_F1F0_F1_bet alte 96.8 0.017 3.7E-07 58.4 12.6 65 194-259 119-183 (449)
422 PF01580 FtsK_SpoIIIE: FtsK/Sp 96.8 0.0012 2.7E-08 60.1 4.2 167 196-374 19-202 (205)
423 COG1111 MPH1 ERCC4-like helica 96.8 0.014 3E-07 58.7 11.6 138 216-373 31-170 (542)
424 TIGR03269 met_CoM_red_A2 methy 96.8 0.026 5.6E-07 59.2 14.6 59 325-409 445-503 (520)
425 TIGR00956 3a01205 Pleiotropic 96.8 0.015 3.2E-07 67.8 13.8 37 201-237 74-110 (1394)
426 TIGR00956 3a01205 Pleiotropic 96.8 0.02 4.4E-07 66.8 14.8 160 203-374 778-961 (1394)
427 TIGR01526 nadR_NMN_Atrans nico 96.8 0.007 1.5E-07 59.2 9.5 141 214-373 162-318 (325)
428 COG4586 ABC-type uncharacteriz 96.8 0.038 8.2E-07 51.6 13.5 179 203-411 39-234 (325)
429 PRK09700 D-allose transporter 96.8 0.011 2.5E-07 61.7 11.8 36 203-238 278-313 (510)
430 smart00487 DEXDc DEAD-like hel 96.8 0.014 2.9E-07 51.9 10.5 114 215-339 25-143 (201)
431 COG4172 ABC-type uncharacteriz 96.8 0.027 5.9E-07 55.3 12.8 178 201-411 300-504 (534)
432 PLN03211 ABC transporter G-25; 96.7 0.013 2.8E-07 63.0 11.8 36 202-237 82-117 (659)
433 PRK13549 xylose transporter AT 96.7 0.015 3.2E-07 60.8 12.1 35 203-237 277-311 (506)
434 PRK05541 adenylylsulfate kinas 96.7 0.0029 6.2E-08 56.1 5.7 40 211-251 4-43 (176)
435 PRK12608 transcription termina 96.7 0.011 2.5E-07 58.1 10.2 60 198-258 118-178 (380)
436 KOG0739|consensus 96.7 0.014 3.1E-07 54.8 10.3 97 197-348 151-247 (439)
437 PRK13343 F0F1 ATP synthase sub 96.7 0.011 2.4E-07 60.5 10.6 64 194-259 143-206 (502)
438 TIGR03029 EpsG chain length de 96.7 0.0045 9.7E-08 59.1 7.3 42 215-257 105-146 (274)
439 PRK10463 hydrogenase nickel in 96.7 0.018 3.9E-07 54.9 11.2 95 214-339 104-198 (290)
440 COG1135 AbcC ABC-type metal io 96.7 0.026 5.7E-07 53.6 12.0 158 200-373 18-200 (339)
441 COG0552 FtsY Signal recognitio 96.7 0.24 5.2E-06 47.7 18.6 39 214-253 139-177 (340)
442 cd03285 ABC_MSH2_euk MutS2 hom 96.7 0.0031 6.6E-08 58.3 5.8 30 210-239 26-55 (222)
443 TIGR01241 FtsH_fam ATP-depende 96.7 0.011 2.3E-07 61.6 10.5 34 211-250 87-120 (495)
444 TIGR00954 3a01203 Peroxysomal 96.7 0.044 9.5E-07 59.1 15.4 34 204-237 468-501 (659)
445 COG2894 MinD Septum formation 96.7 0.014 3.1E-07 52.5 9.6 109 216-338 5-126 (272)
446 cd03253 ABCC_ATM1_transporter 96.7 0.024 5.2E-07 52.7 11.9 36 203-238 16-51 (236)
447 TIGR00455 apsK adenylylsulfate 96.7 0.0076 1.6E-07 53.8 8.2 41 211-252 15-55 (184)
448 cd00268 DEADc DEAD-box helicas 96.7 0.024 5.1E-07 51.3 11.5 137 214-374 36-183 (203)
449 cd03228 ABCC_MRP_Like The MRP 96.7 0.016 3.4E-07 51.1 10.1 36 203-238 17-52 (171)
450 cd02019 NK Nucleoside/nucleoti 96.7 0.0031 6.8E-08 46.5 4.7 32 217-251 2-33 (69)
451 PRK06793 fliI flagellum-specif 96.7 0.012 2.6E-07 59.3 10.3 55 196-253 139-193 (432)
452 cd03248 ABCC_TAP TAP, the Tran 96.7 0.014 3E-07 54.0 10.1 36 203-238 29-64 (226)
453 PRK13695 putative NTPase; Prov 96.7 0.0076 1.7E-07 53.3 8.0 33 217-250 3-36 (174)
454 PRK09435 membrane ATPase/prote 96.7 0.014 3.1E-07 57.0 10.4 41 215-256 57-97 (332)
455 COG1084 Predicted GTPase [Gene 96.7 0.081 1.8E-06 50.6 15.0 95 216-324 170-280 (346)
456 TIGR01257 rim_protein retinal- 96.7 0.02 4.4E-07 68.2 13.4 37 202-238 1953-1989(2272)
457 PRK10938 putative molybdenum t 96.7 0.013 2.7E-07 61.0 10.8 34 203-236 275-308 (490)
458 PF01583 APS_kinase: Adenylyls 96.7 0.0052 1.1E-07 53.0 6.5 103 213-333 1-108 (156)
459 cd02028 UMPK_like Uridine mono 96.7 0.0025 5.5E-08 56.7 4.8 37 216-253 1-37 (179)
460 TIGR03574 selen_PSTK L-seryl-t 96.7 0.02 4.4E-07 53.8 11.2 36 216-252 1-36 (249)
461 PRK05986 cob(I)alamin adenolsy 96.6 0.018 3.8E-07 51.4 10.0 146 214-408 22-173 (191)
462 TIGR01359 UMP_CMP_kin_fam UMP- 96.6 0.022 4.9E-07 50.6 10.9 31 216-252 1-31 (183)
463 COG0396 sufC Cysteine desulfur 96.6 0.0058 1.3E-07 55.4 6.9 158 210-377 26-206 (251)
464 cd01129 PulE-GspE PulE/GspE Th 96.6 0.011 2.3E-07 56.2 9.1 41 213-256 79-119 (264)
465 PRK03992 proteasome-activating 96.6 0.014 3.1E-07 58.7 10.5 36 210-249 161-196 (389)
466 cd03282 ABC_MSH4_euk MutS4 hom 96.6 0.0041 8.9E-08 56.6 6.0 31 210-240 25-55 (204)
467 PRK07667 uridine kinase; Provi 96.6 0.0035 7.7E-08 56.5 5.6 39 215-254 18-56 (193)
468 COG1129 MglA ABC-type sugar tr 96.6 0.049 1.1E-06 55.6 14.1 39 200-238 20-58 (500)
469 PRK10982 galactose/methyl gala 96.6 0.015 3.2E-07 60.6 10.9 34 204-237 264-297 (491)
470 cd03112 CobW_like The function 96.6 0.017 3.6E-07 50.3 9.6 45 216-263 2-46 (158)
471 TIGR02858 spore_III_AA stage I 96.6 0.015 3.4E-07 55.1 10.0 25 215-239 112-136 (270)
472 PTZ00293 thymidine kinase; Pro 96.6 0.014 3E-07 52.9 9.2 136 212-408 2-137 (211)
473 PRK02362 ski2-like helicase; P 96.6 0.013 2.9E-07 64.0 10.9 143 210-373 35-179 (737)
474 PF00265 TK: Thymidine kinase; 96.6 0.015 3.2E-07 51.6 9.1 138 214-409 1-138 (176)
475 KOG0731|consensus 96.6 0.013 2.8E-07 62.4 10.1 113 209-377 341-460 (774)
476 PF00006 ATP-synt_ab: ATP synt 96.6 0.01 2.2E-07 54.4 8.2 60 199-262 1-60 (215)
477 PRK13886 conjugal transfer pro 96.6 0.063 1.4E-06 49.9 13.4 40 216-256 5-44 (241)
478 PRK00254 ski2-like helicase; P 96.6 0.022 4.8E-07 62.2 12.2 114 210-340 35-153 (720)
479 COG2909 MalT ATP-dependent tra 96.5 0.027 5.8E-07 60.2 12.1 129 212-372 35-167 (894)
480 cd00820 PEPCK_HprK Phosphoenol 96.5 0.002 4.2E-08 51.8 3.0 34 202-235 3-36 (107)
481 PRK10263 DNA translocase FtsK; 96.5 0.0091 2E-07 66.8 9.0 44 327-375 1142-1185(1355)
482 TIGR00962 atpA proton transloc 96.5 0.019 4.1E-07 59.1 10.8 64 194-259 142-205 (501)
483 TIGR01194 cyc_pep_trnsptr cycl 96.5 0.046 9.9E-07 57.8 14.1 29 210-238 364-392 (555)
484 PRK10522 multidrug transporter 96.5 0.02 4.4E-07 60.4 11.4 172 204-410 339-525 (547)
485 PF13086 AAA_11: AAA domain; P 96.5 0.0034 7.3E-08 57.9 5.0 49 216-264 19-75 (236)
486 PRK06696 uridine kinase; Valid 96.5 0.004 8.7E-08 57.5 5.3 38 215-253 23-60 (223)
487 CHL00176 ftsH cell division pr 96.5 0.016 3.6E-07 61.6 10.5 35 211-251 215-249 (638)
488 PRK14528 adenylate kinase; Pro 96.5 0.019 4.1E-07 51.4 9.6 23 216-238 3-25 (186)
489 cd03289 ABCC_CFTR2 The CFTR su 96.5 0.019 4.2E-07 54.8 10.1 36 203-238 19-54 (275)
490 TIGR01243 CDC48 AAA family ATP 96.5 0.011 2.5E-07 64.5 9.6 37 210-250 208-244 (733)
491 PRK15064 ABC transporter ATP-b 96.5 0.044 9.6E-07 57.6 13.7 160 204-409 335-510 (530)
492 PTZ00361 26 proteosome regulat 96.5 0.024 5.3E-07 57.5 11.3 29 210-238 213-241 (438)
493 cd03284 ABC_MutS1 MutS1 homolo 96.5 0.011 2.5E-07 54.2 8.2 25 215-239 31-55 (216)
494 cd03287 ABC_MSH3_euk MutS3 hom 96.5 0.014 3.1E-07 53.7 8.7 29 210-238 27-55 (222)
495 PRK10636 putative ABC transpor 96.5 0.041 9E-07 59.1 13.6 35 204-238 328-362 (638)
496 PRK09694 helicase Cas3; Provis 96.5 0.065 1.4E-06 59.1 15.1 50 214-263 301-352 (878)
497 TIGR02524 dot_icm_DotB Dot/Icm 96.5 0.0041 8.9E-08 61.5 5.5 45 212-256 132-176 (358)
498 TIGR02868 CydC thiol reductant 96.5 0.017 3.6E-07 60.8 10.4 152 204-373 351-527 (529)
499 CHL00059 atpA ATP synthase CF1 96.5 0.025 5.5E-07 57.5 11.1 64 194-259 122-185 (485)
500 PRK08927 fliI flagellum-specif 96.5 0.024 5.2E-07 57.2 10.9 62 194-259 139-200 (442)
No 1
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.2e-94 Score=701.96 Aligned_cols=433 Identities=49% Similarity=0.839 Sum_probs=416.6
Q ss_pred CCCCCCHHHHHHHHHHHhcCcccHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCCcccccCHH
Q psy2891 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITVFDSLSNTGNAEEIGGLS 92 (452)
Q Consensus 13 ~~~~~~~~aE~~vLg~ll~~~~~~~~i~~~L~p~~F~~~~h~~If~~i~~l~~~~~~id~~tv~~~l~~~~~~~~~gg~~ 92 (452)
+.||||++||++|||+|+.+|+.+..+...|.|+|||.+.||.||++|.+++++++|+|++||..+|++.+.++.+||..
T Consensus 1 ~~~p~~~eAE~~vLG~il~~~~~~~~v~~~l~~~dFy~~~H~~IF~a~~~l~~~~~~id~vtv~~~l~~~~~~~~igg~~ 80 (435)
T COG0305 1 RLPPQDIEAEQAVLGGILLDPDAIERVSERLRPEDFYRPAHRLIYQAILDLYGQGEPIDLVTVSEELSDRGLLTRIGGAN 80 (435)
T ss_pred CCCCCCHHHHHHHhhhhhcCHHHHHHHHHhcChhhcCcHHHHHHHHHHHHHHhcCCCCcHhHHHHHHhhcchHhhcCcHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhhhhhhhhccCcccHHH
Q psy2891 93 YLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQP 172 (452)
Q Consensus 93 ~l~~l~~~~~~~~n~~~y~~~l~~~~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~ 172 (452)
||.+|+..+|+.+|+.+|+++|++++++|+|+..+.++.+.+++......+++++++++.+.+++.. ....++.++.+
T Consensus 81 yl~~L~~~~ps~~Ni~~y~~iv~e~s~~R~Li~~~~~i~~~~~~~~~~~~~~~l~~ae~~i~~i~~~--~~~~~~~~~~~ 158 (435)
T COG0305 81 YLATLIDRTPSAANIDYYAKIVKEKALLRELIEAGNEIVNLGYESEKDLDEEVLDAAEKKIFDVAER--KNSEDFVHIGD 158 (435)
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHh--hcccchhhHHH
Confidence 9999999999999999999999999999999999999999999876555569999999999999887 56678999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCCccccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 173 LLNRVIKRINKLHNRGTNDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 173 ~~~~~~~~i~~~~~~~~~~~~~~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
++.++++.+++.+.+. + ..|+||||..||.+++||++|+|++++|+||+|||+||+++|.++|...+.+|++||+|
T Consensus 159 ~l~~~~~~i~~~~~~~---~-~~Gi~tgf~~LD~~t~G~~~~dLii~AaRP~mGKTafalnia~n~a~~~~~~v~iFSLE 234 (435)
T COG0305 159 LLKETMDEIEARFENG---G-LIGVPTGFTDLDEITSGFRPGDLIIVAARPGMGKTALALNIALNAAADGRKPVAIFSLE 234 (435)
T ss_pred HHHHHHHHHHHHhccC---C-CcccccCchhhHHHhcCCccCCEEEEccCCCCChHHHHHHHHHHHHHhcCCCeEEEEcc
Confidence 9999999999998776 4 88999999999999999999999999999999999999999999998888999999999
Q ss_pred CCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEc
Q psy2891 253 MSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIID 332 (452)
Q Consensus 253 ~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID 332 (452)
|+.++++.|+++..++++..+++.|.+++++|+++..++..+.+.++||+|.|++++.+|++.+++++++++ +++|+||
T Consensus 235 M~~eql~~R~Ls~~s~v~~~kirtg~l~~~d~~~l~~a~~~l~~~~i~IdD~~~~si~eir~~aRrlk~~~~-l~~i~iD 313 (435)
T COG0305 235 MSEEQLVMRLLSSESGIESSKLRTGRLSDDEWERLIKAASELSEAPIFIDDTPGLTITEIRSKARRLKLKHN-LGLIVID 313 (435)
T ss_pred CCHHHHHHHhhccccccchhccccccccHHHHHHHHHHHHHHhhCCeeecCCCcCCHHHHHHHHHHHHHhcC-ccEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred CcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcc
Q psy2891 333 YLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEV 412 (452)
Q Consensus 333 ~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~ 412 (452)
|||+|.......++.++++++++.||.+|++++||||+++|+||..++|.++||.+||||+||+|||+||.|+|+||+++
T Consensus 314 YLqLm~~~~~~~~r~qevs~iSr~LK~lAkEl~vpvialSQLsR~~E~R~dkrP~lSDLRESGsIEQDAD~VmflyRde~ 393 (435)
T COG0305 314 YLQLMTGGKKSENRKQEVSEISRSLKGLAKELGVPVIALSQLNRSVEQRTDKRPMLSDLRESGALEQDADIVIFLHRDEA 393 (435)
T ss_pred EEEeecccccchhHHHHHHHHHHHHHHHHHhcCCcEEehhhhcccchhccccCCccccCccCCchhhhCCEEEEEechhh
Confidence 99999988766899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCeEEEEEeeccCCCcceEEEEEEcCccceecC
Q psy2891 413 YNQNSADKGIAEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452 (452)
Q Consensus 413 ~~~~~~~~~~~~l~i~KnR~G~~g~~~l~f~~~~~~f~~~ 452 (452)
|+++.+.+|.++++|.|||||++|++.+.|++++++|.++
T Consensus 394 y~~~~~~~g~aeiIi~K~RnGp~GtV~l~f~~~~~~F~~~ 433 (435)
T COG0305 394 YLKDTPDRGEAEVIVAKNRNGPTGTVKLAFDPQFTKFKNL 433 (435)
T ss_pred ccCCCCCCceEEEEEEeccCCCCceEEEEEeccccccccc
Confidence 9988888899999999999999999999999999999874
No 2
>PRK08840 replicative DNA helicase; Provisional
Probab=100.00 E-value=1.5e-91 Score=705.96 Aligned_cols=444 Identities=51% Similarity=0.864 Sum_probs=408.1
Q ss_pred ccccccCCCCCCHHHHHHHHHHHhcCcccHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCCcc
Q psy2891 7 TENKKFRVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITVFDSLSNTGNAE 86 (452)
Q Consensus 7 ~~~~~~~~~~~~~~aE~~vLg~ll~~~~~~~~i~~~L~p~~F~~~~h~~If~~i~~l~~~~~~id~~tv~~~l~~~~~~~ 86 (452)
.+.++.+.+|+++++|++|||+||.+|+.+.++...|+|+|||.|.||.||++|.+|+.+|+|||++||.++|++.+.++
T Consensus 12 ~~~~~~~~~p~~~eaEqavLGalL~~~~~~~~v~~~L~~edFy~~~Hq~If~ai~~L~~~g~~iD~vtv~~~L~~~~~l~ 91 (464)
T PRK08840 12 AQVDAIKVPPHSLEAEQSVIGGLLLDNERWDTVAEKVVASDFYSRPHRLIFEGVKSILEAGKPLDLITLSEHLERREQLE 91 (464)
T ss_pred ccchhhcCCCCCHHHHHHHHHHHHcCHHHHHHHHhhCCHHHCCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhcCchh
Confidence 45667777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHHHhcCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhhhhhhhhccC
Q psy2891 87 EIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQAFISRGKEVKQILDEAESKIFSIAEKEICINKG 166 (452)
Q Consensus 87 ~~gg~~~l~~l~~~~~~~~n~~~y~~~l~~~~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~ 166 (452)
.+||.+||.+|++.+|+++|+.+|+++|++++++|+++..+.++.+.+++....+++++++++++.+..+.........+
T Consensus 92 ~~GG~~YL~~L~~~~~s~~ni~~Ya~iVke~s~~R~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~i~~~~~~~~~~ 171 (464)
T PRK08840 92 DVGGFAYLADLAKNTPSAANINAYADIVAERALVRNLIGVANEIADAGYDPQGRTSEDLLDMAESKVFAIAEARTSENEG 171 (464)
T ss_pred hcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhccCcCCCC
Confidence 99999999999999999999999999999999999999999999998876433588999999999999987653211246
Q ss_pred cccHHHHHHHHHHHHHHHHhCCCCCCCccccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcE
Q psy2891 167 FQQIQPLLNRVIKRINKLHNRGTNDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPV 246 (452)
Q Consensus 167 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~v 246 (452)
+.++.+++.++++.+++..+.+. +...|+||||+.||++++||++|+|++|+|+||+|||+|++++|.++|.++|.+|
T Consensus 172 ~~~~~~~~~~~~~~i~~~~~~~~--~~~~gi~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v 249 (464)
T PRK08840 172 PQNVDSILEKTLERIELLYKTPQ--DGVTGVDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPV 249 (464)
T ss_pred ceeHHHHHHHHHHHHHHHHhcCC--CCCCCcCCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeE
Confidence 67789999999999988764321 3567999999999999999999999999999999999999999999987678999
Q ss_pred EEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHHHH-hCCCeEEEcCCCCCHHHHHHHHHHHHHHcCC
Q psy2891 247 AIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKI-NKSQLYIDETPSLNVIELRANSRRLSRQCGK 325 (452)
Q Consensus 247 l~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l-~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~ 325 (452)
+|||+||+.+++..|+++..++++..+++.|.+++++|.++..+..++ .+.++||+|.+.+|+.+|++.++++++++++
T Consensus 250 ~~fSlEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~ 329 (464)
T PRK08840 250 LIFSLEMPAEQLMMRMLASLSRVDQTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGG 329 (464)
T ss_pred EEEeccCCHHHHHHHHHHhhCCCCHHHHhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999998 5689999999999999999999999988755
Q ss_pred ccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeE
Q psy2891 326 IGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVIL 405 (452)
Q Consensus 326 ~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl 405 (452)
+++|||||||+|..+....++.++++.+++.||.+|+++|||||+++|+||+.++|.++||.++|||+||+|||+||+|+
T Consensus 330 ~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~r~~krP~lsDLreSG~IEqdAD~v~ 409 (464)
T PRK08840 330 LSMIMVDYLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIM 409 (464)
T ss_pred CCEEEEccHHhcCCCCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchHhhhhcccccccCCEEE
Confidence 99999999999975443467888999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCcccccCCCCCCeEEEEEeeccCCCcceEEEEEEcCccceecC
Q psy2891 406 FIYRDEVYNQNSADKGIAEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452 (452)
Q Consensus 406 ~l~r~~~~~~~~~~~~~~~l~i~KnR~G~~g~~~l~f~~~~~~f~~~ 452 (452)
+|||+++|+++++.++.++|+|+|||+|++|++++.|++.+++|.++
T Consensus 410 ~l~R~~~y~~~~~~~~~~elivaKnR~G~~G~v~l~f~~~~~~f~~~ 456 (464)
T PRK08840 410 FIYRDEVYNPDSPLKGTAEIIIGKQRNGPIGSVRLTFQGQYSRFDNY 456 (464)
T ss_pred EEecccccCCCcCCCCceEEEEecccCCCCceEEEEEecCcccccCC
Confidence 99999999876666788999999999999999999999999999874
No 3
>PRK08006 replicative DNA helicase; Provisional
Probab=100.00 E-value=2.3e-91 Score=705.90 Aligned_cols=438 Identities=52% Similarity=0.883 Sum_probs=403.8
Q ss_pred CCCCCCHHHHHHHHHHHhcCcccHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCCcccccCHH
Q psy2891 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITVFDSLSNTGNAEEIGGLS 92 (452)
Q Consensus 13 ~~~~~~~~aE~~vLg~ll~~~~~~~~i~~~L~p~~F~~~~h~~If~~i~~l~~~~~~id~~tv~~~l~~~~~~~~~gg~~ 92 (452)
+.||+++++|++|||+||.+|+.+.++...|+|+|||.|.||.||++|.+|+.+|+|||++||..+|++.+.++.+||.+
T Consensus 25 ~~~p~~~eaEqavLGalL~~~~~~~~v~~~L~~edFy~~~H~~If~ai~~L~~~g~~iD~vtv~~~L~~~~~l~~vGG~~ 104 (471)
T PRK08006 25 KVPPHSIEAEQSVLGGLMLDNERWDDVAERVVADDFYTRPHRHIFTEMARLQESGSPIDLITLAESLERQGQLDSVGGFA 104 (471)
T ss_pred cCCCCCHHHHHHHHHHHHcCHHHHHHHHhhCCHHHcCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHhcCchhhcCCHH
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhhhhhhhhccCcccHHH
Q psy2891 93 YLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQP 172 (452)
Q Consensus 93 ~l~~l~~~~~~~~n~~~y~~~l~~~~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~ 172 (452)
||.+|+..+++++|+.+|+++|++++.+|+++..+.++.+.+++....++.++++++++.+..+.........++.++.+
T Consensus 105 yL~~L~~~~~s~ani~~Ya~iV~e~~~~R~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~ 184 (471)
T PRK08006 105 YLAELSKNTPSAANISAYADIVRERAVVREMISVANEIADAGYDPQGRTSEDLLDLAESRVFQIAESRANKDEGPKNIAD 184 (471)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHhccCCCCCCceeHHH
Confidence 99999999999999999999999999999999999999998886433578999999999999997653211225678899
Q ss_pred HHHHHHHHHHHHHhCCCCCCCccccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 173 LLNRVIKRINKLHNRGTNDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 173 ~~~~~~~~i~~~~~~~~~~~~~~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
.+.++++.+++..+.+. +...|+||||+.||++++||+||+|++|+|+||+|||+|++++|.++|.++|.+|+|||+|
T Consensus 185 ~~~~~~~~i~~~~~~~~--~~~~Gi~TG~~~LD~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlE 262 (471)
T PRK08006 185 ILDATVARIEQLFQQPH--DGVTGVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLE 262 (471)
T ss_pred HHHHHHHHHHHHHhcCC--CCCCcccCCCHHHHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 99999999988654421 3567999999999999999999999999999999999999999999987678999999999
Q ss_pred CCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHHHH-hCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEE
Q psy2891 253 MSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKI-NKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIII 331 (452)
Q Consensus 253 ~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l-~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvI 331 (452)
|+.+++..|++|..++++..+++.|.+++++|.++..+...+ .+.++||+|.+.+|+.+|++.+++++++++++++|||
T Consensus 263 M~~~ql~~Rlla~~~~v~~~~i~~~~l~~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvI 342 (471)
T PRK08006 263 MPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMI 342 (471)
T ss_pred CCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 999999999999999999999999999999999999999988 7789999999999999999999999888745999999
Q ss_pred cCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCc
Q psy2891 332 DYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDE 411 (452)
Q Consensus 332 D~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~ 411 (452)
||||+|..+....++.++++++++.||.+|+++|||||+++|+||+.++|.++||.++|||+||+|||+||+|++|||++
T Consensus 343 DYLqli~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~r~dkrP~lsDLreSG~IEqdAD~v~~l~R~~ 422 (471)
T PRK08006 343 DYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDE 422 (471)
T ss_pred ccHHHccCCCCCCCcHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchhhhhhcCcccccCCEEEEEeccc
Confidence 99999976543467888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCeEEEEEeeccCCCcceEEEEEEcCccceecC
Q psy2891 412 VYNQNSADKGIAEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452 (452)
Q Consensus 412 ~~~~~~~~~~~~~l~i~KnR~G~~g~~~l~f~~~~~~f~~~ 452 (452)
+|+++++.+|.++|+|+|||+|++|++++.|++.+++|.++
T Consensus 423 ~y~~~~~~~g~~elivaKnR~G~~G~v~l~f~~~~~~f~~~ 463 (471)
T PRK08006 423 VYHENSDLKGIAEIIIGKQRNGPIGTVRLTFNGQWSRFDNY 463 (471)
T ss_pred ccccccCCCCceEEEEecccCCCCceEEEEEccCcccccCC
Confidence 99876666788999999999999999999999999999874
No 4
>PRK07004 replicative DNA helicase; Provisional
Probab=100.00 E-value=3.5e-91 Score=705.26 Aligned_cols=449 Identities=68% Similarity=1.099 Sum_probs=410.6
Q ss_pred cCCCccccccCCCCCCHHHHHHHHHHHhcCcccHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhcC
Q psy2891 3 VPFNTENKKFRVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITVFDSLSNT 82 (452)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~aE~~vLg~ll~~~~~~~~i~~~L~p~~F~~~~h~~If~~i~~l~~~~~~id~~tv~~~l~~~ 82 (452)
.|.-.|.+..+.+|+++++|++|||+||.+|+.+.++...|+|+|||.|.||.||++|.+|+.+|+|+|++||..+|++.
T Consensus 3 ~~~~~~~~~~~~~p~~~eaEqaVLGalL~~~~~~~~v~~~L~~edFy~~~H~~If~ai~~L~~~g~~iD~vtl~~~L~~~ 82 (460)
T PRK07004 3 APADPQLESLKVPPHSIEAEQSVLGGLLLDNAAWDRIADFLSQSDFYRYDHRIIFEHIGRLIAATRPADVITVYEALTTS 82 (460)
T ss_pred CccccccccccCCCCCHHHHHHHHHHHHcCHHHHHHHHhhCCHHHcCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc
Confidence 34444444345689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCHHHHHHHHhcCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhhhhhhh
Q psy2891 83 GNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQAFISRGKEVKQILDEAESKIFSIAEKEIC 162 (452)
Q Consensus 83 ~~~~~~gg~~~l~~l~~~~~~~~n~~~y~~~l~~~~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~ 162 (452)
+.++.+||.+||.+|+..+++.+|+.+|+++|++++++|++++.+.++.+.++++...++.++++++++.+..+......
T Consensus 83 ~~l~~igg~~yL~~L~~~~~s~ani~~Ya~iV~e~~~~R~li~~~~~i~~~~~~~~~~~~~~~l~~a~~~l~~i~~~~~~ 162 (460)
T PRK07004 83 GKAEEVGGLAYLNALAQNTPSAANIRRYAEIVRDRAVLRRLVSVADEISADAFNPQGKEVRQLLDEAESKVFSIAEEGAR 162 (460)
T ss_pred CchhhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCCHHHHHHHHHHHHHHHHcccCc
Confidence 99999999999999999999999999999999999999999999999999888754457899999999999998765322
Q ss_pred hccCcccHHHHHHHHHHHHHHHHhCCCCCCCccccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhC
Q psy2891 163 INKGFQQIQPLLNRVIKRINKLHNRGTNDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIEN 242 (452)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~ 242 (452)
...++.++.+.+.++++.+++...+. +++...|+||||+.||++++||++|++++|+|+||+|||+|++++|.++|.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~gi~TG~~~LD~~t~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~ 241 (460)
T PRK07004 163 GTQGFLEIGPLLTQVVERIDTLYHTA-NPSDVTGTPTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEY 241 (460)
T ss_pred CcCcchhHHHHHHHHHHHHHHHHhcc-ccCCCCCccCCcHHhcccccCCCCCceEEEEeCCCCCccHHHHHHHHHHHHHc
Confidence 23466788899999999988765542 11356799999999999999999999999999999999999999999998777
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHH
Q psy2891 243 KLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQ 322 (452)
Q Consensus 243 g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~ 322 (452)
|.+|+|||+||+.+++..|+++..++++..++++|.+++++|.++..+..++.+.++||++.+.+++.+|++.+++++++
T Consensus 242 ~~~v~~fSlEM~~~ql~~R~la~~~~v~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~ 321 (460)
T PRK07004 242 GLPVAVFSMEMPGTQLAMRMLGSVGRLDQHRMRTGRLTDEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQ 321 (460)
T ss_pred CCeEEEEeCCCCHHHHHHHHHHhhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhc
Q psy2891 323 CGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDAD 402 (452)
Q Consensus 323 ~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD 402 (452)
++++++|||||||+|.......++.++++++++.||.||++++||||+++|+||+.++|.++||.++|||+||+|||+||
T Consensus 322 ~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD 401 (460)
T PRK07004 322 CGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSDLRESGAIEQDAD 401 (460)
T ss_pred CCCCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEEEEeccChhhhccCCCCCChHHHhcchhhhhcCC
Confidence 75589999999999985543467889999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecCcccccCCCCCCeEEEEEeeccCCCcceEEEEEEcCccceecC
Q psy2891 403 VILFIYRDEVYNQNSADKGIAEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452 (452)
Q Consensus 403 ~vl~l~r~~~~~~~~~~~~~~~l~i~KnR~G~~g~~~l~f~~~~~~f~~~ 452 (452)
+|++|||+++|+++++.+|.++|+|+|||+|++|++++.|++.++||.++
T Consensus 402 ~v~~l~R~~~y~~~~~~~g~~e~ivaKnR~G~~G~v~l~f~~~~~~F~~~ 451 (460)
T PRK07004 402 VILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGPVRLTFLGQYTKFDNF 451 (460)
T ss_pred EEEEeccccccCCCcCCCCceEEEEEccCCCCCceEEEEEecCCCcccCC
Confidence 99999999999876666788999999999999999999999999999874
No 5
>PRK08760 replicative DNA helicase; Provisional
Probab=100.00 E-value=1.9e-90 Score=701.84 Aligned_cols=436 Identities=51% Similarity=0.847 Sum_probs=405.1
Q ss_pred CCCCCCHHHHHHHHHHHhcCcccHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCCcccccCHH
Q psy2891 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITVFDSLSNTGNAEEIGGLS 92 (452)
Q Consensus 13 ~~~~~~~~aE~~vLg~ll~~~~~~~~i~~~L~p~~F~~~~h~~If~~i~~l~~~~~~id~~tv~~~l~~~~~~~~~gg~~ 92 (452)
+.+|+++++|++|||+||.+|+.+.++...|+|+|||.|.||.||++|.+|+.+|+|+|++||.++|.+++.++.+||..
T Consensus 31 ~~~p~~~eaEqaVLGalL~~~~~~~~v~~~L~~edFy~~~H~~If~ai~~L~~~~~~iD~vtv~~~L~~~~~l~~iGG~~ 110 (476)
T PRK08760 31 RVPPHSVEAEQAVLGGLMLAPDALDRVNDQLTENDFYRRDHRLIYRAIRELSEKDRPFDAVTLGEWFESQGKLEQVGDGA 110 (476)
T ss_pred cCCCCCHHHHHHHHHHHHcCHHHHHHHHhhCCHHhCCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhcCchhhcCCHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhhhhhhhhccCcccHHH
Q psy2891 93 YLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQP 172 (452)
Q Consensus 93 ~l~~l~~~~~~~~n~~~y~~~l~~~~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~ 172 (452)
||.+|+..+|+.+|+.+|+++|++++++|+++..+.++.+.+++....++.++++++++.+..+.........++.++.+
T Consensus 111 YL~~L~~~~~s~~ni~~Ya~iV~e~~~~R~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~i~~~~~~~~~~~~~~~~ 190 (476)
T PRK08760 111 YLIELASTTPSAANIAAYAEIVRDKAVLRQLIEVGTTIVNDGFQPEGRESIELLASAEKAVFKIAEAGARGRTDFVAMPG 190 (476)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHhccccccCCceeHHH
Confidence 99999999999999999999999999999999999999998876433578999999999999987652222345678899
Q ss_pred HHHHHHHHHHHHHhCCCCCCCccccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 173 LLNRVIKRINKLHNRGTNDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 173 ~~~~~~~~i~~~~~~~~~~~~~~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
++.++++.+++++..+ +...|+||||+.||++++||++|+|++|+|+||+|||+|++++|.++|.+.|.+|+|||+|
T Consensus 191 ~~~~~~~~~~~~~~~~---~~~~Gi~TG~~~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlE 267 (476)
T PRK08760 191 ALKDAFEELRNRFENG---GNITGLPTGYNDFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSME 267 (476)
T ss_pred HHHHHHHHHHHHHhCC---CCCCcccCCcHHHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEecc
Confidence 9999999998877665 4678999999999999999999999999999999999999999999987678999999999
Q ss_pred CCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEc
Q psy2891 253 MSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIID 332 (452)
Q Consensus 253 ~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID 332 (452)
|+.+++..|+++..++++..+++.|.+++++|.++..++.++.+.++||++.+.+++++|++.+++++++++ +++||||
T Consensus 268 Ms~~ql~~Rl~a~~s~i~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~~~~-~~lVvID 346 (476)
T PRK08760 268 MSASQLAMRLISSNGRINAQRLRTGALEDEDWARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKREHD-LGLIVID 346 (476)
T ss_pred CCHHHHHHHHHHhhCCCcHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcC-CCEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999998886 9999999
Q ss_pred CcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcc
Q psy2891 333 YLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEV 412 (452)
Q Consensus 333 ~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~ 412 (452)
|||+|..+....++.++++++++.||.+|++++||||+++|+||+.++|.+++|.++|||+||+|||+||+|++|||+++
T Consensus 347 yLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~vl~l~R~~~ 426 (476)
T PRK08760 347 YLQLMSVPGNSENRATEISEISRSLKGLAKELNVPVIALSQLNRSLETRTDKRPVMADLRESGAIEQDADMIVFIYRDDY 426 (476)
T ss_pred cHHhcCCCCCCcccHHHHHHHHHHHHHHHHHhCCEEEEeeccCccccccCCCCCCHHHHhhccchhcCCCEEEEEechhh
Confidence 99999755434678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccC-CCCCCeEEEEEeeccCCCcceEEEEEEcCccceecC
Q psy2891 413 YNQN-SADKGIAEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452 (452)
Q Consensus 413 ~~~~-~~~~~~~~l~i~KnR~G~~g~~~l~f~~~~~~f~~~ 452 (452)
|+++ .+.++.++|+|+|||+|++|++++.|++.+++|.++
T Consensus 427 y~~~~~~~~~~~eliiaKnR~G~~g~~~l~f~~~~~~f~~~ 467 (476)
T PRK08760 427 YNKENSPDKGLAEIIIGKHRGGPTGSCKLKFFGEYTRFDNL 467 (476)
T ss_pred cccccccCCCceEEEEEccCCCCCceEEEEEecCCCceecc
Confidence 9765 455788999999999999999999999999999874
No 6
>PRK05636 replicative DNA helicase; Provisional
Probab=100.00 E-value=3.6e-90 Score=700.81 Aligned_cols=434 Identities=37% Similarity=0.694 Sum_probs=404.7
Q ss_pred CCCCCCHHHHHHHHHHHhcCcccHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCCcccccCHH
Q psy2891 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITVFDSLSNTGNAEEIGGLS 92 (452)
Q Consensus 13 ~~~~~~~~aE~~vLg~ll~~~~~~~~i~~~L~p~~F~~~~h~~If~~i~~l~~~~~~id~~tv~~~l~~~~~~~~~gg~~ 92 (452)
+.+|+++++|++|||+||.+|+.+.++...|+|+|||.|.||.||++|.+|+.+|+|||++||..+|++.+.++.+||.+
T Consensus 68 ~~~p~~~eAEqaVLGalL~~p~~i~ev~~~L~~edFy~~~Hq~IF~Ai~~L~~~g~pID~vtV~~~L~~~g~Le~iGG~~ 147 (505)
T PRK05636 68 RQPPYDNEAEQGVLGAMLLSPDTVIDIVEVLTPEDFYRPAHQLIFQAIIDLFSDNKEIDPVIVAGRLDRTNDLERVGGAP 147 (505)
T ss_pred cCCCCCHHHHHHHHHHHHcCHHHHHHHHhhCCHHHcCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhcCchhhcCCHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHhhhhhhhhhccCcccHH
Q psy2891 93 YLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQAFISR-GKEVKQILDEAESKIFSIAEKEICINKGFQQIQ 171 (452)
Q Consensus 93 ~l~~l~~~~~~~~n~~~y~~~l~~~~~~R~l~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~ 171 (452)
||.+|+..+|+++|+.+|+++|++++++|+++..+.++.+.+++.. ..++.++++++++.+..+... ....++..+.
T Consensus 148 YL~~L~~~~~s~aNi~~Ya~iVke~a~~R~li~~~~~i~~~~~~~~~~~~~~~~i~~a~~~l~~l~~~--~~~~~~~~~~ 225 (505)
T PRK05636 148 YLHTLIQSVPTAANARYYAEIVSEKAVLRRLVDAGTRVVQLGYEGDEGAEIDSVIDRAQQEVFAVSQK--NQSEDYAVLA 225 (505)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHhhc--cCCCCceeHH
Confidence 9999999999999999999999999999999999999999887642 247899999999999998765 2334667789
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCccccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 172 PLLNRVIKRINKLHNRGTNDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 172 ~~~~~~~~~i~~~~~~~~~~~~~~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
+.+.++++.+++..... +...|+||||+.||++++||++|+|++|+|+||+|||+|++++|.++|.++|.+|+|||+
T Consensus 226 ~~l~~~~~~i~~~~~~~---~~~~Gi~TG~~~LD~~t~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSl 302 (505)
T PRK05636 226 DILDPTMDELEMLSSQG---GIATGIPTGFKDLDDLTNGLRGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSL 302 (505)
T ss_pred HHHHHHHHHHHHHHhCC---CCCCceecChHHHhhhcCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 99999999998775544 456799999999999999999999999999999999999999999998777899999999
Q ss_pred CCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEE
Q psy2891 252 EMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIII 331 (452)
Q Consensus 252 E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvI 331 (452)
||+.+++..|+++..++++..+++.|.+++++|.++.+++.++.+.++||+|.+.+|+++|++.+++++++++ +++|||
T Consensus 303 EMs~~ql~~R~ls~~s~v~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~~-~~lvvI 381 (505)
T PRK05636 303 EMSKSEIVMRLLSAEAEVRLSDMRGGKMDEDAWEKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQKHD-LKLIVV 381 (505)
T ss_pred eCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcC-CCEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987 999999
Q ss_pred cCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCc
Q psy2891 332 DYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDE 411 (452)
Q Consensus 332 D~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~ 411 (452)
||||+|.......++.++++++++.||.||+++|||||+++|+||+.++|.++||.++|||+||+|||+||+|++|||++
T Consensus 382 DYLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~dkrP~lsDLreSG~IEqdAD~vl~l~R~~ 461 (505)
T PRK05636 382 DYLQLMSSGKRVESRQQEVSEFSRQLKLLAKELDVPLIAISQLNRGPESRTDKRPQLADLRESGSLEQDADMVMLLYRPD 461 (505)
T ss_pred cchHhcCCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEEEEeecCccccccCCCCCcHHHHhhcccccccCCEEEEEeccc
Confidence 99999975443467888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCeEEEEEeeccCCCcceEEEEEEcCccceecC
Q psy2891 412 VYNQNSADKGIAEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452 (452)
Q Consensus 412 ~~~~~~~~~~~~~l~i~KnR~G~~g~~~l~f~~~~~~f~~~ 452 (452)
+|+++.+.+|.++|+|+|||||++|++.+.|+++++||.|+
T Consensus 462 ~y~~~~~~~g~~elivaK~RnG~~Gtv~l~f~~~~~rF~~~ 502 (505)
T PRK05636 462 SQDKDDERAGEADIILAKHRGGPIDTVQVAHQLHYSRFVDM 502 (505)
T ss_pred ccCCccCCCCceEEEEecCCCCCCceEEEEeecCccccccc
Confidence 99876666789999999999999999999999999999875
No 7
>PRK06904 replicative DNA helicase; Validated
Probab=100.00 E-value=7.8e-90 Score=695.81 Aligned_cols=440 Identities=52% Similarity=0.896 Sum_probs=400.8
Q ss_pred cCCCCCCHHHHHHHHHHHhcCcccHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCCcccccCH
Q psy2891 12 FRVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITVFDSLSNTGNAEEIGGL 91 (452)
Q Consensus 12 ~~~~~~~~~aE~~vLg~ll~~~~~~~~i~~~L~p~~F~~~~h~~If~~i~~l~~~~~~id~~tv~~~l~~~~~~~~~gg~ 91 (452)
.+.+|+++|+|++|||+||.+|+.++++...|+|+|||.|.||.||++|.+|+.+|+|+|++||..+|++.+.++.+||.
T Consensus 20 ~~~~p~~~eaE~aVLGalL~~~~~~~~v~~~L~~edFy~~~H~~IF~ai~~L~~~g~~iD~vtl~~~L~~~~~l~~igg~ 99 (472)
T PRK06904 20 VLIPPHSIEAEQAVLGGIMLDNRHWDSVAERVIADDFYTFEHRIIFQEMELLFRQNTPIDLLTLDQALKTKGKSDEVGGF 99 (472)
T ss_pred ccCCCCCHHHHHHHHHHHHcCHHHHHHHHhhCCHHHcCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhcCchhhcCcH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhhhhhhhhccCcccHH
Q psy2891 92 SYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQ 171 (452)
Q Consensus 92 ~~l~~l~~~~~~~~n~~~y~~~l~~~~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~ 171 (452)
+||.+|++.+|+.+|+.+|+++|++++.+|+++..+.++.+.++++...+++++++++++.+..+.........++.++.
T Consensus 100 ~yL~~L~~~~~s~~ni~~Ya~iVke~~~~R~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~i~~~~~~~~~~~~~~~ 179 (472)
T PRK06904 100 AYLAELSNNTPSAANILAYADIVREKAILRELISVGNNIAKNAYSPKGQDIKDILDEAERDVFSIAEKRTTANEGPQNVI 179 (472)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHHHHHHHHhhcccccCCceeHH
Confidence 99999999999999999999999999999999999999999888754357999999999999998765322123567889
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCccccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 172 PLLNRVIKRINKLHNRGTNDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 172 ~~~~~~~~~i~~~~~~~~~~~~~~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
+.+.++++.+++..+...+ +...|+||||+.||++++||+||+|++|+|+||+|||+|++++|.++|...|.+|+|||+
T Consensus 180 ~~~~~~~~~i~~~~~~~~~-~~~~Gi~TG~~~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSl 258 (472)
T PRK06904 180 NLLENTIDKIENLAATPTN-NGVTGVTTGFTDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSL 258 (472)
T ss_pred HHHHHHHHHHHHHHhhccC-CCCCCccCChHHHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEec
Confidence 9999999988875422101 467799999999999999999999999999999999999999999998767899999999
Q ss_pred CCCHHHHHHHHHHHhCCCCccccccC-CCCcchHHHHHHHHHHHhC-CCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEE
Q psy2891 252 EMSGIQLAMRMLGSVGKLDQHKLRTG-RLSSDDWPRINDSIKKINK-SQLYIDETPSLNVIELRANSRRLSRQCGKIGVI 329 (452)
Q Consensus 252 E~~~~~i~~R~~a~~~~i~~~~i~~g-~l~~~~~~~~~~a~~~l~~-~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~v 329 (452)
||+.+++..|+++..++++..+++.| .+++++|.++..+...+.+ .++||+|.+++|+++|++.+++++++++++++|
T Consensus 259 EMs~~ql~~Rlla~~s~v~~~~i~~g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lv 338 (472)
T PRK06904 259 EMPAEQIMMRMLASLSRVDQTKIRTGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLI 338 (472)
T ss_pred cCCHHHHHHHHHHhhCCCCHHHhccCCCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEE
Confidence 99999999999999999999999999 8999999999999999964 569999999999999999999998876459999
Q ss_pred EEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEec
Q psy2891 330 IIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYR 409 (452)
Q Consensus 330 vID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r 409 (452)
||||||+|.......++.++++++++.||.+|+++|||||+++|+||+.++|.++||.++|||+||+|||+||+|++|||
T Consensus 339 vIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSG~IEqdAD~v~~l~R 418 (472)
T PRK06904 339 MVDYLQLMRAPGFEDNRTLEIAEISRSLKALAKELKVPVVALSQLNRTLENRGDKRPVNSDLRESGSIEQDADLIMFIYR 418 (472)
T ss_pred EEecHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEEEEEecCchhhccCCCCCchHHHhhcCccccCCcEEEEEec
Confidence 99999999865433678889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCC-CCCeEEEEEeeccCCCcceEEEEEEcCccceecC
Q psy2891 410 DEVYNQNSA-DKGIAEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452 (452)
Q Consensus 410 ~~~~~~~~~-~~~~~~l~i~KnR~G~~g~~~l~f~~~~~~f~~~ 452 (452)
+++|+.+.. .++.++|+|+|||+|++|++++.|++.++||.++
T Consensus 419 ~~~y~~~~~~~~~~~elivaKnR~G~~G~v~l~f~~~~~~f~~~ 462 (472)
T PRK06904 419 DEVYNETTEDNKGVAEIIIGKQRNGPIGRVRLAFQGQYSRFDNL 462 (472)
T ss_pred cccccCccccCCCceEEEEeccCCCCCceEEEEEccCCCCcccc
Confidence 999875533 3688999999999999999999999999999874
No 8
>PRK06321 replicative DNA helicase; Provisional
Probab=100.00 E-value=8.7e-89 Score=686.36 Aligned_cols=436 Identities=41% Similarity=0.686 Sum_probs=395.2
Q ss_pred cCCCCCCHHHHHHHHHHHhcCcccHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCCcccccCH
Q psy2891 12 FRVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITVFDSLSNTGNAEEIGGL 91 (452)
Q Consensus 12 ~~~~~~~~~aE~~vLg~ll~~~~~~~~i~~~L~p~~F~~~~h~~If~~i~~l~~~~~~id~~tv~~~l~~~~~~~~~gg~ 91 (452)
.+.+|+++++|++|||+||.+|+.++++...|+|+|||.|.||.||++|.+|+.+|+|+|++||.++|++.+.++.+||.
T Consensus 13 ~~~~p~~~eaE~avLG~lL~~~~~~~~v~~~L~~e~Fy~~~h~~If~ai~~l~~~~~~iD~vtv~~~L~~~~~l~~igG~ 92 (472)
T PRK06321 13 LLSPPNSKESEMIVLGCMLTSVNYLNLAANQLQEDDFYFLEHKIIFRVLQDAFKSDKPIDVHLAGEELKRRNQLNVIGGP 92 (472)
T ss_pred cCCCCCCHHHHHHHHHHHHcCHhHHHHHHhhCCHHHCCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhcCChhhcCCH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhhhhhhhhccCcccHH
Q psy2891 92 SYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQ 171 (452)
Q Consensus 92 ~~l~~l~~~~~~~~n~~~y~~~l~~~~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~ 171 (452)
+||.+|+..+++++|+.+|+++|++++++|+++..+.++.+.+++. ..++.++++++++.+.++.... ...++.++.
T Consensus 93 ~yL~~L~~~~~s~~ni~~Ya~iV~e~~~~R~li~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~~i~~~~--~~~~~~~~~ 169 (472)
T PRK06321 93 SYLITLAEFAGTSAYIEEYAEIIRSKSILRKMIQTAKEIEKKALEE-PKDVATALDEAQNLLFKISQTT--NLAQYVLVA 169 (472)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHHHHhcc--CCCCceEHH
Confidence 9999999999999999999999999999999999999999988774 3689999999999999997662 334566777
Q ss_pred HHHHHH--------HHHHHHHH----h--CCCCCCCccccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 172 PLLNRV--------IKRINKLH----N--RGTNDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 172 ~~~~~~--------~~~i~~~~----~--~~~~~~~~~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
+.+.++ ++.+++.. . .+.+.+...|+||||..||++++||++|+|++|+|+||+|||+|++++|.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~tG~~~LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~ 249 (472)
T PRK06321 170 DKLKGLTSSKDKPFLLQLQERQEAFQQSAQGDSSPMISGIPTHFIDLDKMINGFSPSNLMILAARPAMGKTALALNIAEN 249 (472)
T ss_pred HHHhhhhcchhhhHHHHHHHHHHHHhhhhccccCCCCCccccCcHHHHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 775542 33333321 1 000113567999999999999999999999999999999999999999999
Q ss_pred HHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHH
Q psy2891 238 IAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSR 317 (452)
Q Consensus 238 ~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~ 317 (452)
+|.+.|.+|+|||+||+.+++..|++|..++++..+++.|.+++++|.++..+...+.+.+++|++.+.+++++|++.++
T Consensus 250 ~a~~~g~~v~~fSLEMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~idd~~~~ti~~i~~~~r 329 (472)
T PRK06321 250 FCFQNRLPVGIFSLEMTVDQLIHRIICSRSEVESKKISVGDLSGRDFQRIVSVVNEMQEHTLLIDDQPGLKITDLRARAR 329 (472)
T ss_pred HHHhcCCeEEEEeccCCHHHHHHHHHHhhcCCCHHHhhcCCCCHHHHHHHHHHHHHHHcCCEEEeCCCCCCHHHHHHHHH
Confidence 98767899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCccEEEEcCcchhccCC---CCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhh
Q psy2891 318 RLSRQCGKIGVIIIDYLQLMSANS---RGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRES 394 (452)
Q Consensus 318 ~~~~~~~~~~~vvID~l~~i~~~~---~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S 394 (452)
+++++++ +++|||||||+|.... ...++.++++++++.||.+|+++|||||+++|+||+.++|.++||.++|||+|
T Consensus 330 ~~~~~~~-~~lvvIDyLql~~~~~~~~~~~~r~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLReS 408 (472)
T PRK06321 330 RMKESYD-IQFLIIDYLQLLSGSGNLRNSESRQTEISEISRMLKNLARELNIPILCLSQLSRKVEDRANHRPMMSDLRES 408 (472)
T ss_pred HHHHhcC-CCEEEEcchHHcCCCCccCCcchHHHHHHHHHHHHHHHHHHhCCcEEEEeecChhhhccCCCCCCHHHHhhc
Confidence 9999887 9999999999997532 23577889999999999999999999999999999999999999999999999
Q ss_pred chhhhhhceeEEEecCcccccCCCCCCeEEEEEeeccCCCcceEEEEEEcCccceecC
Q psy2891 395 GAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452 (452)
Q Consensus 395 ~~ie~~aD~vl~l~r~~~~~~~~~~~~~~~l~i~KnR~G~~g~~~l~f~~~~~~f~~~ 452 (452)
|+|||+||+|++|||+++|++++ .+|.++|+|+|||+|++|++.+.|++++++|.++
T Consensus 409 G~IEqdAD~v~~l~R~~~y~~~~-~~~~~elivaKnR~G~~G~v~l~f~~~~~~f~~~ 465 (472)
T PRK06321 409 GSIEQDSDLVMFLLRREYYDPND-KPGTAELIVAKNRHGSIGSVPLVFEKEFARFRNY 465 (472)
T ss_pred ccccccCCEEEEEechhhcCCcC-CCCceEEEEEecCCCCCceEEEEEecCCCcccCc
Confidence 99999999999999999987543 4578999999999999999999999999999874
No 9
>PRK05595 replicative DNA helicase; Provisional
Probab=100.00 E-value=8.4e-88 Score=682.75 Aligned_cols=435 Identities=46% Similarity=0.791 Sum_probs=404.4
Q ss_pred ccCCCCCCHHHHHHHHHHHhcCcccHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCCcccccC
Q psy2891 11 KFRVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITVFDSLSNTGNAEEIGG 90 (452)
Q Consensus 11 ~~~~~~~~~~aE~~vLg~ll~~~~~~~~i~~~L~p~~F~~~~h~~If~~i~~l~~~~~~id~~tv~~~l~~~~~~~~~gg 90 (452)
+.+.+|+++++|++|||+||.+|+.++++.+.|+|+|||.|.||.||++|.+++.+|+|+|+++|..+|++.+.++.+||
T Consensus 4 ~~~~~p~~~eaE~~VLG~lL~~~~~~~~v~~~L~~edFy~~~H~~IF~aI~~L~~~g~~iD~vtl~~~L~~~~~l~~~gg 83 (444)
T PRK05595 4 PIRSLPQSIEAEQSVLGAMIIDKTSIAEAAEVLKSEDFYRDSHKVIFSAIIELYQKDIAVDMLTLTENLKSTDKLEAAGG 83 (444)
T ss_pred ccCCCCCCHHHHHHHHHHHHcCHhHHHHHHhhCCHHHcCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCchhhcCc
Confidence 44668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhhhhhhhhccCcccH
Q psy2891 91 LSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQI 170 (452)
Q Consensus 91 ~~~l~~l~~~~~~~~n~~~y~~~l~~~~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~ 170 (452)
.+||.+|.+.+++++|+.+|+++|++++++|+++..+.++.+.+++. ..++++++++++..+.++.... ...++.++
T Consensus 84 ~~yL~~L~~~~~s~~ni~~Ya~iVke~~~~R~l~~~~~~~~~~~~~~-~~~~~~~l~~~e~~l~~l~~~~--~~~~~~~~ 160 (444)
T PRK05595 84 VTYITELSNSIVSTANIQSYIKIVKDKSTLRRLIKSSTEIIENSYNN-QDDVEKVIDSAEKKIFDISEKR--TTSDFEPL 160 (444)
T ss_pred HHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHhcc--CCccceeH
Confidence 99999999999999999999999999999999999999999888763 3578999999999998887652 33456778
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCccccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEe
Q psy2891 171 QPLLNRVIKRINKLHNRGTNDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFS 250 (452)
Q Consensus 171 ~~~~~~~~~~i~~~~~~~~~~~~~~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s 250 (452)
.+++.++++.+++.+++. +...|+||||+.||++++||++|++++|+|+||+|||+|++++|.++|.++|.+|+|||
T Consensus 161 ~~~l~~~~~~~~~~~~~~---~~~~gi~tg~~~ld~~~~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fS 237 (444)
T PRK05595 161 SNVLERGFEQIENLFNNK---GETTGVASGFRELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFS 237 (444)
T ss_pred HHHHHHHHHHHHHHHhCC---CCCCcccCChHHHHHhcCCCCCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEe
Confidence 999999999998876655 45679999999999999999999999999999999999999999998877799999999
Q ss_pred CCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEE
Q psy2891 251 MEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVII 330 (452)
Q Consensus 251 ~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vv 330 (452)
+||+.+++..|+++..++++..++++|.+++++|.++..+...+.+.++||++.+++|+++|++.+++++.++| +++||
T Consensus 238 lEms~~~l~~R~~a~~~~v~~~~~~~~~l~~~e~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~-~~~vv 316 (444)
T PRK05595 238 LEMSKEQLAYKLLCSEANVDMLRLRTGNLEDKDWENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKIEHG-IDMIL 316 (444)
T ss_pred cCCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcC-CCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998887 99999
Q ss_pred EcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecC
Q psy2891 331 IDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRD 410 (452)
Q Consensus 331 ID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~ 410 (452)
|||||+|.......++.++++++++.||.+|+++|||||+++|+||+.++|.++||.++|||+||+|||+||+|++|||+
T Consensus 317 IDylql~~~~~~~~~r~~~v~~is~~LK~lAke~~i~vi~lsQLnR~~e~r~~~rP~lsdlr~Sg~Ieq~AD~vl~l~r~ 396 (444)
T PRK05595 317 IDYLQLMSGGKGSESRQQEVSEISRSIKALAKEMECPVIALSQLSRAPEQRADHRPMLSDLRESGSIEQDADVVMFLYRD 396 (444)
T ss_pred EeHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhCCeEEEeeccCcchhccCCCCCchhhhhhhcccccCCCEEEEEecc
Confidence 99999997544346788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCeEEEEEeeccCCCcceEEEEEEcCccceecC
Q psy2891 411 EVYNQNSADKGIAEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452 (452)
Q Consensus 411 ~~~~~~~~~~~~~~l~i~KnR~G~~g~~~l~f~~~~~~f~~~ 452 (452)
++|+++.+.+|.++++|+|||+|++|++++.|++.+++|.++
T Consensus 397 ~~~~~~~~~~~~~e~iv~K~R~G~~g~~~~~~~~~~~~f~~~ 438 (444)
T PRK05595 397 EYYNKETEDKNVAECIIAKQRNGPTGTVKLAWLGQYSKFGNL 438 (444)
T ss_pred cccccccCCCCceEEEEEccCCCCCceEEEEEecCCCccccc
Confidence 998766666789999999999999999999999999999874
No 10
>PRK09165 replicative DNA helicase; Provisional
Probab=100.00 E-value=1.4e-87 Score=685.15 Aligned_cols=444 Identities=41% Similarity=0.695 Sum_probs=403.5
Q ss_pred cCCCccccccCCCCCCHHHHHHHHHHHhcCcccHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhcC
Q psy2891 3 VPFNTENKKFRVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITVFDSLSNT 82 (452)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~aE~~vLg~ll~~~~~~~~i~~~L~p~~F~~~~h~~If~~i~~l~~~~~~id~~tv~~~l~~~ 82 (452)
.|..... ..+.+|+++++|++|||+||.+|+.++++...|+|+|||.|.||.||++|.+|+.+|+|+|++||.++|.+.
T Consensus 10 ~~~~~~~-~~~~~p~~~eaEqaVLGalL~~~~~~~~v~~~L~~edFy~~~H~~IF~ai~~L~~~g~piD~vtv~~~L~~~ 88 (497)
T PRK09165 10 APDAAEP-EIRELPHNIEAEQALLGAILINNRALDRVSDFLKPEHFFEPLHQRIYEAIAKIIRKGKLATPVTLKTFLEND 88 (497)
T ss_pred Ccccccc-cccCCCCCHHHHHHHHHHHHcCHHHHHHHHhhCCHHHCCCHHHHHHHHHHHHHHhCCCCcCHHHHHHHHhhc
Confidence 3444433 334689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCHHHHHHHHhcCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHhhhhhhh
Q psy2891 83 GNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQAFISR-GKEVKQILDEAESKIFSIAEKEI 161 (452)
Q Consensus 83 ~~~~~~gg~~~l~~l~~~~~~~~n~~~y~~~l~~~~~~R~l~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~~l~~~~~ 161 (452)
+.++.+||.+||.+|+..+|+++|+.+|+++|++.+.+|+++..+.++.+.+++.. ..++.++++++++.+.++....
T Consensus 89 ~~l~~~gG~~YL~~L~~~~~s~~ni~~Ya~iV~e~~~~R~li~~~~~i~~~a~~~~~~~~~~~~i~~~~~~l~~i~~~~- 167 (497)
T PRK09165 89 EALGELGGVQYLAKLATEAVTIINARDYGRIIYDLALRRELINIGEDVVNNAYDAPVDVAPQEQIEDAEQKLYELAETG- 167 (497)
T ss_pred CchhhcCCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCHHHHHHHHHHHHHHHHhcc-
Confidence 98999999999999999999999999999999999999999999999999887643 2478899999999999987652
Q ss_pred hhccCcccHHHHHHHHHHHHHHHHhCCCCCCCccccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHh
Q psy2891 162 CINKGFQQIQPLLNRVIKRINKLHNRGTNDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE 241 (452)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~ 241 (452)
....++.++.+.+.++++.+++..+.. +...|+||||+.||+++|||.||++++|+|+||+|||+|++++|.++|.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~gi~TG~~~LD~~~gG~~~g~livIaarpg~GKT~~al~ia~~~a~~ 244 (497)
T PRK09165 168 RYEGGFQSFGTAITEAVDMANAAFKRD---GHLSGISTGLRDLDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKA 244 (497)
T ss_pred CCCCCceeHHHHHHHHHHHHHHHHhCC---CCCCcccCChHHHhhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHh
Confidence 122367789999999999988875554 56789999999999999999999999999999999999999999999864
Q ss_pred --------------CCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCC
Q psy2891 242 --------------NKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSL 307 (452)
Q Consensus 242 --------------~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~ 307 (452)
+|.+|+|||+||+.+++..|++|..++++..++++|.+++++|.++.++...+.+.++||++.+.+
T Consensus 245 ~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~la~~s~v~~~~i~~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ 324 (497)
T PRK09165 245 YRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILSEQSEISSSKIRRGKISEEDFEKLVDASQELQKLPLYIDDTPAL 324 (497)
T ss_pred hcccccccccccccCCCeEEEEeCcCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCC
Confidence 368999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCccEEEEcCcchhccCC--CCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCC
Q psy2891 308 NVIELRANSRRLSRQCGKIGVIIIDYLQLMSANS--RGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKR 385 (452)
Q Consensus 308 t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~--~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~ 385 (452)
++++|++.+++++++++ +++|||||||+|.... ...++.++++.+++.||.+|+++|||||+++|+||+.++|.++|
T Consensus 325 ti~~i~~~ir~l~~~~~-~~lvvIDyLqli~~~~~~~~~~r~~ev~~is~~LK~lAkel~ipVi~lsQLnR~~e~r~~kr 403 (497)
T PRK09165 325 SISQLRARARRLKRQHG-LDLLVVDYLQLIRGSSKRSSDNRVQEISEITQGLKALAKELNIPVIALSQLSRQVEQRDDKR 403 (497)
T ss_pred CHHHHHHHHHHHHHhcC-CCEEEEcchHhccCCCCCCCCchHHHHHHHHHHHHHHHHHhCCeEEEeecccchhhccCCCC
Confidence 99999999999998887 9999999999998653 24678889999999999999999999999999999999999999
Q ss_pred CCchhhhhhchhhhhhceeEEEecCcccccCC-----------------CCCCeEEEEEeeccCCCcceEEEEEEcCccc
Q psy2891 386 PIMSDLRESGAIEQDADVILFIYRDEVYNQNS-----------------ADKGIAEIIVSKQRNGPIGNIRLTFSGQYTK 448 (452)
Q Consensus 386 p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~-----------------~~~~~~~l~i~KnR~G~~g~~~l~f~~~~~~ 448 (452)
|.++|||+||+|||+||+|++|||+++|+.+. ..++.++|+|+|||+|++|++.+.|++.++|
T Consensus 404 P~lsDLr~Sg~IEqdAD~v~~l~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ivaKnR~G~~g~~~~~f~~~~~~ 483 (497)
T PRK09165 404 PQLSDLRESGSIEQDADVVMFVYREEYYLKRKEPREGTPKHEEWQEKMEKVHNKAEVIIAKQRHGPTGTVKLAFESEFTR 483 (497)
T ss_pred CchhhhhhccchhccCCEEEEEeehhhhccccccccccchhhhhhhhhcccCCceEEEEeccCCCCCeeEEEEEecCCCc
Confidence 99999999999999999999999999886421 0147899999999999999999999999999
Q ss_pred eecC
Q psy2891 449 FNNF 452 (452)
Q Consensus 449 f~~~ 452 (452)
|.++
T Consensus 484 f~~~ 487 (497)
T PRK09165 484 FGDL 487 (497)
T ss_pred ccCc
Confidence 9874
No 11
>PRK05748 replicative DNA helicase; Provisional
Probab=100.00 E-value=7.7e-86 Score=670.26 Aligned_cols=436 Identities=51% Similarity=0.892 Sum_probs=402.8
Q ss_pred ccCCCCCCHHHHHHHHHHHhcCcccHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCCcccccC
Q psy2891 11 KFRVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITVFDSLSNTGNAEEIGG 90 (452)
Q Consensus 11 ~~~~~~~~~~aE~~vLg~ll~~~~~~~~i~~~L~p~~F~~~~h~~If~~i~~l~~~~~~id~~tv~~~l~~~~~~~~~gg 90 (452)
..+.+|+++++|++|||+||.+|+.+.++...|+|+|||+|.||.||++|.+|+.+|+|+|+++|..+|++.+.++.+||
T Consensus 6 ~~~~~p~~~eaE~~VLGalL~~~~~~~~v~~~L~~edF~~~~h~~If~ai~~l~~~g~~iD~~tl~~~L~~~~~l~~~gg 85 (448)
T PRK05748 6 ALRVPPQSIEAEQAVLGAIFLDPDALITVSEYLSPDDFYRHAHRLIFRAMLKLSDRGEPIDVVTVTEILDDQGDLEEVGG 85 (448)
T ss_pred cccCCCCCHHHHHHHHHHHHcCHHHHHHHHhhCCHHHcCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCchhhcCc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999888888999
Q ss_pred HHHHHHHHhcCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhhhhhhhhccCcccH
Q psy2891 91 LSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQI 170 (452)
Q Consensus 91 ~~~l~~l~~~~~~~~n~~~y~~~l~~~~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~ 170 (452)
.+||.+|+..+|+..|+.+|+++|++.+.+|+++..+.++.+.++++. .+++++++.+++.+.++.... ...++.++
T Consensus 86 ~~yL~~L~~~~~s~~ni~~Ya~iVke~~~~R~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~i~~~~--~~~~~~~i 162 (448)
T PRK05748 86 LSYLAELANSVPTAANIEYYAKIVAEKAMLRRLIRTATEIANDAYEPE-DDADEILDEAEKKIFEVSERR--NKSGFKNI 162 (448)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCHHHHHHHHHHHHHHHhhcc--CccCCcCH
Confidence 999999999999999999999999999999999999999998887643 478999999999998887652 23366778
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCccccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEe
Q psy2891 171 QPLLNRVIKRINKLHNRGTNDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFS 250 (452)
Q Consensus 171 ~~~~~~~~~~i~~~~~~~~~~~~~~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s 250 (452)
.+.+.++++.+++..... +...|+||||+.||++++||++|++++|+|+||+|||+|+++++.++|.+.|.+|+|||
T Consensus 163 ~~~~~~~~~~l~~~~~~~---~~~~gi~TG~~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fS 239 (448)
T PRK05748 163 KDVLVKAYDRIEMLHNQT---GDITGIPTGFTDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFS 239 (448)
T ss_pred HHHHHHHHHHHHHHHhcC---CCCCCccCChHHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEe
Confidence 999999999988776554 45679999999999999999999999999999999999999999999876799999999
Q ss_pred CCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEE
Q psy2891 251 MEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVII 330 (452)
Q Consensus 251 ~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vv 330 (452)
+||+.+++..|+++..++++..+++.|.+++++|.++..+...+.+.++||++.+.+++++|++.+++++++++++++||
T Consensus 240 lEms~~~l~~R~l~~~~~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vv 319 (448)
T PRK05748 240 LEMGAESLVMRMLCAEGNIDAQRLRTGQLTDDDWPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLIL 319 (448)
T ss_pred CCCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998873499999
Q ss_pred EcCcchhccCC-CCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEec
Q psy2891 331 IDYLQLMSANS-RGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYR 409 (452)
Q Consensus 331 ID~l~~i~~~~-~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r 409 (452)
|||||+|.... ...++.++++.+++.||.+|+++|||||+++|+||+.++|.+++|.++|||+||+|||+||+|++|||
T Consensus 320 IDyL~li~~~~~~~~~r~~~i~~i~~~LK~lAke~~i~vi~lsQlnr~~~~r~~k~p~lsdlr~Sg~Ieq~AD~v~~l~r 399 (448)
T PRK05748 320 IDYLQLIQGSGRSGENRQQEVSEISRSLKALAKELKVPVIALSQLSRGVEQRQDKRPVMSDIRESGSIEQDADIVAFLYR 399 (448)
T ss_pred EccchhcCCCCCCCcCHHHHHHHHHHHHHHHHHHhCCeEEEecccChhHhhcCCCCCChHHHHhhcchhcCCCEEEEEec
Confidence 99999997543 23678889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCCeEEEEEeeccCCCcceEEEEEEcCccceecC
Q psy2891 410 DEVYNQNSADKGIAEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452 (452)
Q Consensus 410 ~~~~~~~~~~~~~~~l~i~KnR~G~~g~~~l~f~~~~~~f~~~ 452 (452)
+++|+++.+.++.++|+|+|||+|++|++++.|++.++||.++
T Consensus 400 ~~~~~~~~~~~~~~e~~v~K~R~G~~g~~~~~~~~~~~~f~~~ 442 (448)
T PRK05748 400 DDYYDEETENKNTIEIIIAKQRNGPVGTVELAFQKEYNKFVNL 442 (448)
T ss_pred ccccCccccCCCceEEEEeccCCCCCceEEEEEeCCCCccccc
Confidence 9998766666788999999999999999999999999999874
No 12
>PRK06749 replicative DNA helicase; Provisional
Probab=100.00 E-value=3e-85 Score=655.56 Aligned_cols=421 Identities=36% Similarity=0.627 Sum_probs=382.9
Q ss_pred CCCCHHHHHHHHHHHhcCcccHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCCcccccCHHHH
Q psy2891 15 PPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITVFDSLSNTGNAEEIGGLSYL 94 (452)
Q Consensus 15 ~~~~~~aE~~vLg~ll~~~~~~~~i~~~L~p~~F~~~~h~~If~~i~~l~~~~~~id~~tv~~~l~~~~~~~~~gg~~~l 94 (452)
.|+++++|++|||+||.+|+.++++ .|+|+|||.|.||.||++|.+|+.+|+|+|++||.++|. .+.++.+||.+||
T Consensus 2 ~~~~~eaE~~vLG~lL~~~~~~~~v--~l~~e~F~~~~h~~If~ai~~l~~~~~~iD~~tv~~~l~-~~~l~~~gg~~yl 78 (428)
T PRK06749 2 SIQNVEAEKTVLGSLLLDGELIKEC--RLTEQYFSMPVHKSIFQLMRKMEDEGQPIDLVTFTSRVD-PNFLKGIGGMEYF 78 (428)
T ss_pred CCCCHHHHHHHHHHHHcChhhhhee--eECHHHCCcHHHHHHHHHHHHHHhCCCCCCHHHHHHHHh-ccchhhcCCHHHH
Confidence 5899999999999999999999887 499999999999999999999999999999999999997 6778899999999
Q ss_pred HHHHhcCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhhhhhhhhccCcccHHHHH
Q psy2891 95 NSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLL 174 (452)
Q Consensus 95 ~~l~~~~~~~~n~~~y~~~l~~~~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 174 (452)
.+|.+.+++.+|+.+|+++|++++.+|+++..+.++.+.+++ .++.++++++++.+..+.... . .+..++.+.+
T Consensus 79 ~~L~~~~~s~~n~~~ya~~v~~~~~~R~~~~~~~~~~~~~~~---~~~~~~i~~~~~~l~~i~~~~--~-~~~~~~~~~~ 152 (428)
T PRK06749 79 IGLMDGVPTTSNFSYYEGLVRGAWKMYQAGVLGHKMGERLIA---EKSEKIIGETITALCELEEKD--C-VCEFDLKDAL 152 (428)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHHccC--C-CCCccHHHHH
Confidence 999999999999999999999999999999999999987765 267899999999998887652 1 2334778877
Q ss_pred HHHHHHHHHHHhCCCCCCCccccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy2891 175 NRVIKRINKLHNRGTNDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS 254 (452)
Q Consensus 175 ~~~~~~i~~~~~~~~~~~~~~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~ 254 (452)
.++++.+. .+. +...|+||||+.||++++||++|+|++|+|+||+|||+|++++|.++|. +|.+|+|||+||+
T Consensus 153 ~~~~~~~~---~~~---~~~~Gi~TG~~~LD~~t~Gl~~G~LiiIaarPgmGKTafal~ia~~~a~-~g~~v~~fSlEMs 225 (428)
T PRK06749 153 VDLYEELH---QDA---KEITGIETGYTSLNKMTCGLQEGDFVVLGARPSMGKTAFALNVGLHAAK-SGAAVGLFSLEMS 225 (428)
T ss_pred HHHHHHHH---hcC---CCCCCccCCcHHHHHHhCCCCCCcEEEEEeCCCCCchHHHHHHHHHHHh-cCCCEEEEEeeCC
Confidence 77665542 233 4567999999999999999999999999999999999999999999985 6899999999999
Q ss_pred HHHHHHHHHHHhCCCCccccccC--CCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcC-CccEEEE
Q psy2891 255 GIQLAMRMLGSVGKLDQHKLRTG--RLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCG-KIGVIII 331 (452)
Q Consensus 255 ~~~i~~R~~a~~~~i~~~~i~~g--~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~-~~~~vvI 331 (452)
.+++..|+++..++++..+++++ .+++++|.++.++...+.+.|++|+|.+++|+++|++.+++++++++ .+++|||
T Consensus 226 ~~ql~~R~ls~~~~i~~~~l~~~~~~l~~~e~~~~~~a~~~l~~~~i~i~d~~~~t~~~I~~~~r~~~~~~~~~~~lvvI 305 (428)
T PRK06749 226 SKQLLKRMASCVGEVSGGRLKNPKHRFAMEDWEKVSKAFAEIGELPLEIYDNAGVTVQDIWMQTRKLKRKHGDKKILIIV 305 (428)
T ss_pred HHHHHHHHHHhccCCCHHHHhcCcccCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 99999999999999999999875 58999999999999999999999999999999999999999998876 2459999
Q ss_pred cCcchhccCC-CCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecC
Q psy2891 332 DYLQLMSANS-RGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRD 410 (452)
Q Consensus 332 D~l~~i~~~~-~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~ 410 (452)
||||+|.... ...++.++++++++.||.+|+++|||||++||+||+.++|.++||.++|||+||+|||+||+|++|||+
T Consensus 306 DyLqli~~~~~~~~~r~~ei~~isr~LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLR~SG~IEqdAD~vl~l~R~ 385 (428)
T PRK06749 306 DYLQLITGDPKHKGNRFQEISEISRKLKLLARELNVCVVALSQLSRSVESRQDKRPLLSDLRETGQIEQDADVIMLMYRE 385 (428)
T ss_pred eChhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchHhhhhcccccccCCEEEEEeec
Confidence 9999997532 236788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCeEEEEEeeccCCCcceEEEEEEcCccceec
Q psy2891 411 EVYNQNSADKGIAEIIVSKQRNGPIGNIRLTFSGQYTKFNN 451 (452)
Q Consensus 411 ~~~~~~~~~~~~~~l~i~KnR~G~~g~~~l~f~~~~~~f~~ 451 (452)
++|+++.+.++.++|+|+|||+|++|++++.|++.+++|.+
T Consensus 386 ~~y~~~~~~~~~~eliiaKnR~G~~G~v~~~f~~~~~~f~~ 426 (428)
T PRK06749 386 DYYDKETMQKEMTEIHVAKHRNGPVGSFKLRFLKEFGRFVE 426 (428)
T ss_pred ccccccccCCCceEEEEecCCCCCCceEEEEEecCcccccC
Confidence 99976655678899999999999999999999999999986
No 13
>PRK08506 replicative DNA helicase; Provisional
Probab=100.00 E-value=9.8e-84 Score=653.75 Aligned_cols=428 Identities=39% Similarity=0.663 Sum_probs=386.7
Q ss_pred CCCCCHHHHHHHHHHHhcCcccHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCCcccccCHHH
Q psy2891 14 VPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITVFDSLSNTGNAEEIGGLSY 93 (452)
Q Consensus 14 ~~~~~~~aE~~vLg~ll~~~~~~~~i~~~L~p~~F~~~~h~~If~~i~~l~~~~~~id~~tv~~~l~~~~~~~~~gg~~~ 93 (452)
.+|+++++|++|||+||.+|+.++++...|+|+|||.|.||.||++|.+|+.+|+|+|++||..+|.+.+.++ ..|
T Consensus 2 ~~~~~~eaE~~vLGalL~~~~~~~~v~~~L~~e~Fy~~~h~~If~ai~~l~~~~~~iD~vtv~~~L~~~~~l~----~~y 77 (472)
T PRK08506 2 DELYDLDIERAVLSSILFSPDKFEEIASVLEPKDFYLPAHQDIFEAMLKLHNEDEPIDEEFIRKKLPKDKKID----EEI 77 (472)
T ss_pred CCCcCHHHHHHHHHHHHcCHHHHHHHHhhCCHHHcCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhcCcch----HHH
Confidence 3689999999999999999999999999999999999999999999999999999999999999998876653 489
Q ss_pred HHHHHhcCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhhhhhhhhccCcccHHHH
Q psy2891 94 LNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPL 173 (452)
Q Consensus 94 l~~l~~~~~~~~n~~~y~~~l~~~~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~ 173 (452)
|.+|+...+ .+|+.+|+++|++++++|+++..+.++.+.+++. ..++.++++++++.+.++... ....++.++.+.
T Consensus 78 l~~l~~~~~-~~ni~~Ya~iV~e~~~~R~li~~~~~i~~~~~~~-~~~~~~~l~~~~~~l~~i~~~--~~~~~~~~~~~~ 153 (472)
T PRK08506 78 LLEILATNP-IDNIEAYVEEIKEKSIKRELLSLANTIPEQAVEE-DQKSSDILDEVERELYSITNG--SNSEDFKDSKEV 153 (472)
T ss_pred HHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhc--ccccCcccHHHH
Confidence 999987665 4999999999999999999999999999987763 368899999999999988765 233467788999
Q ss_pred HHHHHHHHHHHHhCCCCCCCccccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC
Q psy2891 174 LNRVIKRINKLHNRGTNDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM 253 (452)
Q Consensus 174 ~~~~~~~i~~~~~~~~~~~~~~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~ 253 (452)
+.++++.+++....+. ....|+||||+.||++++||+||+|++|+|+||+|||+|++++|.+++. +|.+|+|||+||
T Consensus 154 ~~~~~~~i~~~~~~~~--~~~~Gi~TG~~~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~~-~g~~V~~fSlEM 230 (472)
T PRK08506 154 IESTMEHIKKQKRLGN--KDIIGLDTGFVELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKALN-QDKGVAFFSLEM 230 (472)
T ss_pred HHHHHHHHHHHHhcCC--CCCCcccCChHHHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHHh-cCCcEEEEeCcC
Confidence 9999998887643321 3567999999999999999999999999999999999999999999974 789999999999
Q ss_pred CHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcC
Q psy2891 254 SGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDY 333 (452)
Q Consensus 254 ~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~ 333 (452)
+.+++..|++|..++++..+++.|.+++++|.++..+..++.+.++||++.+.+|+++|++.+++++++++++++|||||
T Consensus 231 s~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDy 310 (472)
T PRK08506 231 PAEQLMLRMLSAKTSIPLQNLRTGDLDDDEWERLSDACDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDY 310 (472)
T ss_pred CHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988764599999999
Q ss_pred cchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCccc
Q psy2891 334 LQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVY 413 (452)
Q Consensus 334 l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~ 413 (452)
||+|..+....++.++++.+++.||.+|+++|||||+++|+||+.++|.++||.++|||+||+|||+||+|++|||+++|
T Consensus 311 Lql~~~~~~~~~r~~ev~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~vl~l~R~~~y 390 (472)
T PRK08506 311 LQLMSGSGNFKDRHLQISEISRGLKLLARELDIPIIALSQLNRSLESRADKRPMLSDLRESGAIEQDADIILFVYRDDVY 390 (472)
T ss_pred hhhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEeecCcchhhccCCCCChHHhhcchhhhhcCCEEEEEeccccc
Confidence 99998654346788999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCCC--------CC--------------CeEEEEEeeccCCCcceEEEEEEcCccceecC
Q psy2891 414 NQNSA--------DK--------------GIAEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452 (452)
Q Consensus 414 ~~~~~--------~~--------------~~~~l~i~KnR~G~~g~~~l~f~~~~~~f~~~ 452 (452)
+.++. .+ +.++|+|+|||+|++|++.+.|++++++|.++
T Consensus 391 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~eliiaKnR~G~~G~v~l~f~~~~~~f~~~ 451 (472)
T PRK08506 391 KEREEKEKEKKAKKEGKEERRIHFQNKSIEEAEIIIGKNRNGPTGTVKLRFQKEFTRFVDK 451 (472)
T ss_pred ccccccccccccccccccccccccccccccceEEEEecCCCCCCceEEEEEecCCccccCC
Confidence 53210 11 24899999999999999999999999999874
No 14
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=100.00 E-value=1.6e-83 Score=649.71 Aligned_cols=419 Identities=43% Similarity=0.754 Sum_probs=388.2
Q ss_pred CHHHHHHHHHHHhcCcccHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCCcccccCHHHHHHH
Q psy2891 18 SIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITVFDSLSNTGNAEEIGGLSYLNSL 97 (452)
Q Consensus 18 ~~~aE~~vLg~ll~~~~~~~~i~~~L~p~~F~~~~h~~If~~i~~l~~~~~~id~~tv~~~l~~~~~~~~~gg~~~l~~l 97 (452)
++++|++|||+||.+|+.++++...|+|+|||.|.||.||++|.+|+.+|+|+|++||..+|.+.+.++.+||.+||.+|
T Consensus 1 ~~eaE~avLG~lL~~~~~~~~i~~~L~~edFy~~~h~~If~ai~~L~~~~~~iD~~tv~~~L~~~~~~~~igg~~yL~~L 80 (421)
T TIGR03600 1 SIEAEQAVLGGLLLDNDFIERVMAILKPEHFYSQDHRIIFEAMLDMFAENRPVDPLTLADKLEAEGEAEKVGGLAYLAEI 80 (421)
T ss_pred ChHHHHHHHHHHHcCHHHHHHHHhhCCHHHCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhhcCchhhcCCHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999998888999999999999
Q ss_pred HhcCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhh--hhhhhhccCcccHHHHHH
Q psy2891 98 AQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQAFISRGKEVKQILDEAESKIFSIA--EKEICINKGFQQIQPLLN 175 (452)
Q Consensus 98 ~~~~~~~~n~~~y~~~l~~~~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~--~~~~~~~~~~~~~~~~~~ 175 (452)
+..+|+++|+.+|+++|++.+.+|+++..+.++.+.+++....++.++++++++.+.++. .. ....++.++.+.+.
T Consensus 81 ~~~~~s~~ni~~Ya~~v~e~~~~R~l~~~~~~i~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~ 158 (421)
T TIGR03600 81 SNNTPSAANISSYARIVREKAKERKLIAACQRIIDLACSDGGQTAEQKVEEAQAALLALTGMSD--GQERGFVTFGEVLE 158 (421)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhhhhhc--cCcCCchhHHHHHH
Confidence 999999999999999999999999999999999998876544489999999999999887 33 23346678899999
Q ss_pred HHHHHHHHHHhCCCCCCCccccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCH
Q psy2891 176 RVIKRINKLHNRGTNDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSG 255 (452)
Q Consensus 176 ~~~~~i~~~~~~~~~~~~~~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~ 255 (452)
++++.+++...+. +...|+||||+.||++++||++|++++|+|+||+|||+|++++|.++|.++|.+|+|||+||+.
T Consensus 159 ~~~~~~~~~~~~~---~~~~gi~tG~~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~ 235 (421)
T TIGR03600 159 DVVRDLDKRFNPK---GELTGLSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSA 235 (421)
T ss_pred HHHHHHHHHhcCC---CCCcceeCCChhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH
Confidence 9999998876554 4577999999999999999999999999999999999999999999987679999999999999
Q ss_pred HHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcc
Q psy2891 256 IQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQ 335 (452)
Q Consensus 256 ~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~ 335 (452)
+++..|+++..+|++..+++.|.+++++|.++..+..++.+.+++|++.+.+++++|++.+++++.+++++++|||||||
T Consensus 236 ~~l~~Rl~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLq 315 (421)
T TIGR03600 236 EQLGERLLASKSGINTGNIRTGRFNDSDFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQ 315 (421)
T ss_pred HHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998887449999999999
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCccccc
Q psy2891 336 LMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQ 415 (452)
Q Consensus 336 ~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~ 415 (452)
+|... ...+++++++.+++.||.+|+++|||||+++|+||+.++|.+++|.++||||||+|+|+||+|++|||+++|+.
T Consensus 316 l~~~~-~~~~~~~~~~~i~~~Lk~lAke~~i~Vi~lsQlnr~~~~r~~krp~lsdlr~Sg~Ieq~AD~v~~l~R~~~~~~ 394 (421)
T TIGR03600 316 LMAPT-RGRDRNEELGGISRGLKALAKELDVPVVLLAQLNRGSEKRTDKRPIMSDLRDSGAIEQDADVIGLIHREGYYDA 394 (421)
T ss_pred ccCCC-CCCCHHHHHHHHHHHHHHHHHHhCCcEEEecccCcchhhcCCCCCChHHHhhcCCccccCcEEEEeccccccCC
Confidence 99864 34678889999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCeEEEEEeeccCCCcceEEEEE
Q psy2891 416 NSADKGIAEIIVSKQRNGPIGNIRLTF 442 (452)
Q Consensus 416 ~~~~~~~~~l~i~KnR~G~~g~~~l~f 442 (452)
+++.++.++|+|+|||+|++|++++.|
T Consensus 395 ~~~~~~~~el~v~K~R~G~~g~~~l~~ 421 (421)
T TIGR03600 395 REPPAGVAELILAKNRHGPTGTVELLF 421 (421)
T ss_pred ccCCCCceEEEEECCCCCCCceEEecC
Confidence 555558899999999999999999876
No 15
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=100.00 E-value=5e-83 Score=649.44 Aligned_cols=431 Identities=56% Similarity=0.940 Sum_probs=400.2
Q ss_pred CCCCHHHHHHHHHHHhcCcccHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCCcccccCHHHH
Q psy2891 15 PPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITVFDSLSNTGNAEEIGGLSYL 94 (452)
Q Consensus 15 ~~~~~~aE~~vLg~ll~~~~~~~~i~~~L~p~~F~~~~h~~If~~i~~l~~~~~~id~~tv~~~l~~~~~~~~~gg~~~l 94 (452)
+|+++++|++|||+||.+|+.++++...|+|+||++|.|+.||++|.+|+.+|.|+|+++|..+|.+.+.++.+||.+||
T Consensus 2 ~p~~~eaE~~vLgalL~~~~~~~~v~~~L~~edF~~~~h~~If~ai~~l~~~g~~iD~~tl~~~l~~~~~~~~~~g~~yL 81 (434)
T TIGR00665 2 PPHNIEAEQAVLGAILLDNEAIDDVAEILKPEDFYRPAHQLIFQAILDLYEKGEPIDLVTVKEELEKDGKLEEVGGLAYL 81 (434)
T ss_pred CCCCHHHHHHHHHHHHCCHHHHHHHHhhCCHHHCCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhcCchhhcCcHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999888888999999
Q ss_pred HHHHhcCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhhhhhhhhccCcccHHHHH
Q psy2891 95 NSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLL 174 (452)
Q Consensus 95 ~~l~~~~~~~~n~~~y~~~l~~~~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 174 (452)
.+|+..+|++.|+.+|++.|++.+.+|++...+.++.+.++++. .++.++++++++.+.++... ....++.++.+++
T Consensus 82 ~~l~~~~~~~~n~~~ya~~v~e~~~~R~l~~~~~~~~~~a~~~~-~~~~e~l~~~~~~l~~i~~~--~~~~~~~~~~~~~ 158 (434)
T TIGR00665 82 AELADNVPSAANIEYYAEIVKEKAILRRLIEAGTEIVELAYDPE-GDVEELLDEAEQKIFEIAES--RTSGGFKSIKEIL 158 (434)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhhc--cCCCCcccHHHHH
Confidence 99999999999999999999999999999999999998887643 47899999999999998765 2344677899999
Q ss_pred HHHHHHHHHHHhCCCCCCCccccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy2891 175 NRVIKRINKLHNRGTNDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS 254 (452)
Q Consensus 175 ~~~~~~i~~~~~~~~~~~~~~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~ 254 (452)
.++++.+++...++ +...|+||||+.||++++||+||++++|+|+||+|||+|+++++.++|.+.|.+|+|||+||+
T Consensus 159 ~~~~~~~~~~~~~~---~~~~gi~tG~~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~ 235 (434)
T TIGR00665 159 KDTVEEIEELYERG---GGITGVPTGFTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMS 235 (434)
T ss_pred HHHHHHHHHHHhCC---CCCCcccCCchhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCC
Confidence 99999998876654 457799999999999999999999999999999999999999999998767899999999999
Q ss_pred HHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCc
Q psy2891 255 GIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYL 334 (452)
Q Consensus 255 ~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l 334 (452)
.+++..|+++..++++..+++.|.+++++|.++..+..++.+.++||++.+.+++++|++.++++++++| +++||||||
T Consensus 236 ~~~i~~R~~~~~~~v~~~~~~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~~~~~i~~~i~~~~~~~~-~~~vvID~l 314 (434)
T TIGR00665 236 AEQLAMRMLSSESRVDSQKLRTGKLSDEDWEKLTSAAGKLSEAPLYIDDTPGLTITELRAKARRLKREHG-LGLIVIDYL 314 (434)
T ss_pred HHHHHHHHHHHhcCCCHHHhccCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcC-CCEEEEcch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 999999999
Q ss_pred chhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccc
Q psy2891 335 QLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYN 414 (452)
Q Consensus 335 ~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~ 414 (452)
++|.......++..+++.+++.||.+|+++|||||+++|+||+.++|.+++|.++||||||.|+|+||+|++|+|+++|+
T Consensus 315 ~~i~~~~~~~~r~~~i~~i~~~Lk~lA~e~~i~vi~lsqlnr~~~~r~~~~p~lsdlr~Sg~ieq~aD~vi~l~r~~~~~ 394 (434)
T TIGR00665 315 QLMSGSGRSENRQQEVSEISRSLKALAKELNVPVIALSQLSRSVEQREDKRPQLSDLRESGSIEQDADIVMFLYRDEYYN 394 (434)
T ss_pred HhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEeccCcchhccCCCCCChHHHhhccchhhcCCEEEEeccccccC
Confidence 99975443457888899999999999999999999999999999889999999999999999999999999999999887
Q ss_pred cCCCCCCeEEEEEeeccCCCcceEEEEEEcCccceecC
Q psy2891 415 QNSADKGIAEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452 (452)
Q Consensus 415 ~~~~~~~~~~l~i~KnR~G~~g~~~l~f~~~~~~f~~~ 452 (452)
++++.++.++|+|+|||+|++|++.+.|++.++||.++
T Consensus 395 ~~~~~~~~~~l~v~KnR~G~~g~~~l~~~~~~~~f~~~ 432 (434)
T TIGR00665 395 PDSEDKGIAEIIIAKQRNGPTGTVKLAFQGEYTRFENL 432 (434)
T ss_pred CCcCCCCceEEEEecCCCCCCCeEEEEEecCCCcccCC
Confidence 65555688999999999999999999999999999874
No 16
>PHA02542 41 41 helicase; Provisional
Probab=100.00 E-value=7.7e-76 Score=591.60 Aligned_cols=405 Identities=20% Similarity=0.241 Sum_probs=353.0
Q ss_pred HHHHHHHHHhcCcccHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHhcCCCccc---ccCHHHHHH
Q psy2891 21 SEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHP-ADVITVFDSLSNTGNAEE---IGGLSYLNS 96 (452)
Q Consensus 21 aE~~vLg~ll~~~~~~~~i~~~L~p~~F~~~~h~~If~~i~~l~~~~~~-id~~tv~~~l~~~~~~~~---~gg~~~l~~ 96 (452)
+|++|||+||.+|+.++++.+.|+|+|||.|.||.||++|.+|+.+++| +|+.+|..+|++.+ ++. +||.+||.+
T Consensus 1 ~E~~vLg~ll~~~~~~~~v~~~L~~e~Fy~~~h~~If~ai~~l~~~~~~~~~~~tl~~~L~~~~-l~~~~~~gg~~yl~~ 79 (473)
T PHA02542 1 IEETILSNLIFNEDYFRKVWPYLKAEYFESGPEKVIFKLIKKHVNEYNAIPTIEALSIALENRS-LSEVTFDGAKDLLSS 79 (473)
T ss_pred CHHHHHHHHHcCHHHHHHHHhhcCHHhCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhcC-CccccccchHHHHHH
Confidence 4999999999999999999999999999999999999999999999998 78888999999888 665 799999999
Q ss_pred HHhcCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHH---------HHHHHHHHHHhhhhhhhhhccCc
Q psy2891 97 LAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQAFISRGKEVKQ---------ILDEAESKIFSIAEKEICINKGF 167 (452)
Q Consensus 97 l~~~~~~~~n~~~y~~~l~~~~~~R~l~~~~~~~~~~~~~~~~~~~~~---------~l~~~~~~l~~l~~~~~~~~~~~ 167 (452)
|++.+| |+.+|+++|++++.+|+++..+.++.+.+++.. .++++ .++++.+.+..+...
T Consensus 80 L~~~~~---n~~~ya~~v~~~~~~R~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-------- 147 (473)
T PHA02542 80 LSDNPE---DLDWLVKETEKWCQDRAMYNALSKAIEIQDNAD-KPLEKRNKKLPDVGAIPDIMQEALAISFD-------- 147 (473)
T ss_pred HHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CChhHhhhhccchhhHHHHHHHHHHHhhh--------
Confidence 998876 999999999999999999999999998877643 23332 344444333322211
Q ss_pred ccHHHHHHHHHHHHHHHHhCCCCCCCccccccCcccccccc-CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcE
Q psy2891 168 QQIQPLLNRVIKRINKLHNRGTNDNDVTGISTGFFELDKIT-SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPV 246 (452)
Q Consensus 168 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~tg~~~LD~~~-gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~v 246 (452)
.+.+.++++.++++..... ....|+||||+.||+++ ||+++|++++|+|+||+|||+|++++|.+++ +.|.+|
T Consensus 148 ---~~~~~~~~~~ie~~~~~~~--~~~~gi~TG~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a-~~g~~V 221 (473)
T PHA02542 148 ---SSVGHDYFEDYEERYDSYQ--SKANKIPFKLEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYL-QQGYNV 221 (473)
T ss_pred ---HHHHHHHHHHHHHHHhhcc--CCCCccCCCcHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHH-hcCCcE
Confidence 4456778888888653211 24679999999999998 8999999999999999999999999999998 579999
Q ss_pred EEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEE--cCCCCCHHHHHHHHHHHHHHcC
Q psy2891 247 AIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYID--ETPSLNVIELRANSRRLSRQCG 324 (452)
Q Consensus 247 l~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~--~~~~~t~~~i~~~i~~~~~~~~ 324 (452)
+|||+||+.+++..|+++..++++..++.+ +++++|.++..+...+...+++|. +++.+++.+|++.++++++++|
T Consensus 222 l~fSLEM~~~ql~~Rl~a~~~~i~~~~l~~--l~~~~~~~~~~~~~~~~~~~l~I~~~d~~~lt~~~ir~~~rrlk~~~g 299 (473)
T PHA02542 222 LYISMEMAEEVIAKRIDANLLDVSLDDIDD--LSKAEYKAKMEKLRSKTQGKLIIKQYPTGGAHAGHFRALLNELKLKKN 299 (473)
T ss_pred EEEeccCCHHHHHHHHHHHHcCCCHHHHhh--cCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999998875 889999999988888888888765 5788999999999999987664
Q ss_pred -CccEEEEcCcchhccCC---CCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhh
Q psy2891 325 -KIGVIIIDYLQLMSANS---RGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQD 400 (452)
Q Consensus 325 -~~~~vvID~l~~i~~~~---~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~ 400 (452)
++++|||||||+|..+. ...++.++++.+++.||.+|+++|||||+++|+||+.++|.+ |.++|||+||+|||+
T Consensus 300 ~~~dlVvIDYLqL~~~~~~~~~~~nr~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r~d--P~lsDLreSG~IEqd 377 (473)
T PHA02542 300 FKPDVIIVDYLGICASSRLRVSSENSYTYVKAIAEELRGLAVEHDVVVWTAAQTTRSGWDSSD--VDMSDTAESAGLPAT 377 (473)
T ss_pred CCCCEEEEechhhccCCcccCCCCChHHHHHHHHHHHHHHHHHhCCeEEEEEeeCccccccCC--CcchhcccccchHhh
Confidence 48999999999997541 246888999999999999999999999999999999988865 999999999999999
Q ss_pred hceeEEEecCcccccCCCCCCeEEEEEeeccCCCcc---eEEEEEEcCccceecC
Q psy2891 401 ADVILFIYRDEVYNQNSADKGIAEIIVSKQRNGPIG---NIRLTFSGQYTKFNNF 452 (452)
Q Consensus 401 aD~vl~l~r~~~~~~~~~~~~~~~l~i~KnR~G~~g---~~~l~f~~~~~~f~~~ 452 (452)
||+|++|||+++|. +.+.++|+|+|||+|++| ++++.|++++++|.++
T Consensus 378 AD~vl~l~r~~~~~----~~~~~eliv~KnR~G~~g~~g~v~l~f~~~~~~F~~~ 428 (473)
T PHA02542 378 ADFMLAVIETEELA----QMGQQLVKQLKSRYGDKNKFNKFLMGVDKGNQRWYDV 428 (473)
T ss_pred cCEEEEEecCcccc----cCCeEEEEEecCCCCCCCCceEEEEEEECCcCccccc
Confidence 99999999998773 347899999999999977 7999999999999874
No 17
>PRK07773 replicative DNA helicase; Validated
Probab=100.00 E-value=5.3e-70 Score=591.75 Aligned_cols=386 Identities=43% Similarity=0.770 Sum_probs=360.0
Q ss_pred CCCCCCHHHHHHHHHHHhcCcccHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCCcccccCHH
Q psy2891 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITVFDSLSNTGNAEEIGGLS 92 (452)
Q Consensus 13 ~~~~~~~~aE~~vLg~ll~~~~~~~~i~~~L~p~~F~~~~h~~If~~i~~l~~~~~~id~~tv~~~l~~~~~~~~~gg~~ 92 (452)
+.+|+++++|++|||+||.+|+.+.++...|+|+|||.|.||.||++|.+|+.+|+|+|++||..+|++.+.++.+||.+
T Consensus 22 ~~~p~~~eaEqavLG~lL~~~~~i~~v~~~L~~edFy~~~H~~IF~ai~~L~~~g~piD~vtv~~~L~~~~~l~~iGG~~ 101 (886)
T PRK07773 22 RQPPQDLAAEQSVLGGMLLSKEAIARVLERLRPGAFYRPAHQNIYDAILDLYGRGEPADLVTVAAELDRRGLLERIGGAP 101 (886)
T ss_pred cCCCCCHHHHHHHHHHHHcCHHHHHHHHhhCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHhcCchhhcCCHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhhhhhhhhccCcccHHH
Q psy2891 93 YLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQP 172 (452)
Q Consensus 93 ~l~~l~~~~~~~~n~~~y~~~l~~~~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~ 172 (452)
||.+|+..+|+++|+.+|+++|++.+.+|+++..+.++.+.++++ ..++.++++++++.+.++... ....++.++.+
T Consensus 102 yL~~L~~~~~s~~ni~~Ya~iV~e~s~~R~li~~~~~i~~~a~~~-~~~~~~~l~~a~~~l~~i~~~--~~~~~~~~~~~ 178 (886)
T PRK07773 102 YLHTLISTVPTAANADYYARIVAEKALLRRLIEAGTRIVQYGYAE-GADVAEVVDRAQAEIYDVTDR--RLSEDFVALED 178 (886)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHHHhhc--cCcCCceeHHH
Confidence 999999999999999999999999999999999999999988764 368999999999999998776 23446778999
Q ss_pred HHHHHHHHHHHHHhCCCCCCCccccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 173 LLNRVIKRINKLHNRGTNDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 173 ~~~~~~~~i~~~~~~~~~~~~~~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
.+.++++.+++..+++ +...|+||||+.||++++||++|++++|+|+||+|||+|++++|.++|.+.|.+|+|||+|
T Consensus 179 ~~~~~~~~i~~~~~~~---~~~~Gi~TG~~~LD~l~~Gl~~G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlE 255 (886)
T PRK07773 179 LLQPTFDEIDAIASSG---GLARGVPTGFTELDAMTNGLHPGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLE 255 (886)
T ss_pred HHHHHHHHHHHHHhcC---CCCCCccCChhHhccccCCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 9999999998876554 4678999999999999999999999999999999999999999999997778999999999
Q ss_pred CCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEc
Q psy2891 253 MSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIID 332 (452)
Q Consensus 253 ~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID 332 (452)
|+.+++..|+++..++++..++++|.+++++|.++..++..+.+.+++|++.+.+++++|++.+++++++++ +++||||
T Consensus 256 ms~~ql~~R~~s~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~i~i~d~~~~~i~~i~~~~r~~~~~~~-~~lvvID 334 (886)
T PRK07773 256 MSKEQLVMRLLSAEAKIKLSDMRSGRMSDDDWTRLARAMGEISEAPIFIDDTPNLTVMEIRAKARRLRQEAN-LGLIVVD 334 (886)
T ss_pred CCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcC-CCEEEEc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999886 9999999
Q ss_pred CcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeE
Q psy2891 333 YLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVIL 405 (452)
Q Consensus 333 ~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl 405 (452)
|||+|.......++.++++++++.||.+|+++|||||+++|+||+.++|.++||.++|||+||.|++++-+++
T Consensus 335 yLql~~~~~~~~~r~~ei~~isr~LK~lAkel~vpvi~lsQLnR~~e~r~~krP~lsDlres~~~~~d~~V~~ 407 (886)
T PRK07773 335 YLQLMTSGKKYENRQQEVSEISRHLKLLAKELEVPVVALSQLSRGVEQRTDKRPMLSDLRESGCLTGDTLILR 407 (886)
T ss_pred chhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCcEEEecccCcchhccCCCCCCHHHHhhcCcccCcceEEe
Confidence 9999986544568889999999999999999999999999999999999999999999999999998765543
No 18
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=100.00 E-value=8.2e-57 Score=426.71 Aligned_cols=257 Identities=49% Similarity=0.833 Sum_probs=232.4
Q ss_pred ccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccc
Q psy2891 196 GISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLR 275 (452)
Q Consensus 196 ~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~ 275 (452)
|+||||+.||+++||+.||+|++|+|+||+|||+|++|+|.+++...|.+|+|||+||+.+++..|++|..++++..+++
T Consensus 1 Gi~TG~~~LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~~i~ 80 (259)
T PF03796_consen 1 GIPTGFPALDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYNKIR 80 (259)
T ss_dssp SB-SSTHHHHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHHHHH
T ss_pred CCCCChHHHHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhhhhh
Confidence 69999999999999999999999999999999999999999999765799999999999999999999999999999999
Q ss_pred cCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHH
Q psy2891 276 TGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISR 355 (452)
Q Consensus 276 ~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~ 355 (452)
+|.+++++|+++.++..++.+.++++.+.+..++++|.+.+++++.+..++++|||||||+|.......++++++..+++
T Consensus 81 ~g~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~ 160 (259)
T PF03796_consen 81 SGDLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISR 160 (259)
T ss_dssp CCGCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988334999999999999986556778899999999
Q ss_pred HHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccccCCCCCCeEEEEEeeccCCCc
Q psy2891 356 NLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQRNGPI 435 (452)
Q Consensus 356 ~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~~~~~~~~l~i~KnR~G~~ 435 (452)
.||.+|+++|||||+++|+||+.+++.+++|+++|+++|++|||+||+|++|+|++.+.++.+.++.++|+|+|||+|++
T Consensus 161 ~Lk~lA~~~~i~vi~~sQlnr~~~~~~~~~p~l~dl~~sg~Ie~~AD~vl~l~r~~~~~~~~~~~~~~~l~v~KnR~G~~ 240 (259)
T PF03796_consen 161 ELKALAKELNIPVIALSQLNREAEDREDKRPSLSDLRESGAIEQDADVVLFLHRDEKYDEDRDDKGEAELIVAKNRNGPT 240 (259)
T ss_dssp HHHHHHHHHTSEEEEEEEBSGGGGGSSSCS--HHHHCSTSSHHHH-SEEEEEEEHCHCHCCSSCTTEEEEEEEEESSS--
T ss_pred HHHHHHHHcCCeEEEccccChhhhcccccccchhhhhhhHHHHHHHhhhhhhccchhhccccCCCCeEEEEEEecCCCCC
Confidence 99999999999999999999999888899999999999999999999999999999887666667799999999999999
Q ss_pred ceEEEEEEcCccceecC
Q psy2891 436 GNIRLTFSGQYTKFNNF 452 (452)
Q Consensus 436 g~~~l~f~~~~~~f~~~ 452 (452)
|.+.+.|+++++||+|+
T Consensus 241 g~v~~~f~~~~~~f~~~ 257 (259)
T PF03796_consen 241 GTVPLRFNPETSRFTDL 257 (259)
T ss_dssp EEEEEEEETTTTEEEE-
T ss_pred ceEEEEEECCCCeEeec
Confidence 99999999999999985
No 19
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=100.00 E-value=4e-45 Score=343.74 Aligned_cols=241 Identities=57% Similarity=0.941 Sum_probs=221.3
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcc
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSD 282 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~ 282 (452)
+||++++|+++|++++|+|+||+|||+|++|++.+++.+.|.+|+|||+||+++++..|+++..++++...+..+.++.+
T Consensus 2 ~LD~~~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 81 (242)
T cd00984 2 DLDNLTGGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLASESGISLSKLRTGSLSDE 81 (242)
T ss_pred chhhhhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHHHHhcCCCHHHHhcCCCCHH
Confidence 58999889999999999999999999999999999987559999999999999999999999999999999998988888
Q ss_pred hHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHH
Q psy2891 283 DWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAK 362 (452)
Q Consensus 283 ~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~ 362 (452)
++.++.++...+...++++.+.+..++++|.+.++++..+++ +++|||||++.+.......++...+..+++.|+.+|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~-~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~ 160 (242)
T cd00984 82 DWERLAEAIGELKELPIYIDDSSSLTVSDIRSRARRLKKEHG-LGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAK 160 (242)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcC-CCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 888888888888888999998888999999999999988885 9999999999987654345777889999999999999
Q ss_pred HhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccccCCCCCCeEEEEEeeccCCCcceEEEEE
Q psy2891 363 EINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQRNGPIGNIRLTF 442 (452)
Q Consensus 363 ~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~~~~~~~~l~i~KnR~G~~g~~~l~f 442 (452)
++||+||+++|++|....+..++|.++|++||+.|+|.||.||.|+|++.++.++..++..+|++.|||+|++|+++|.|
T Consensus 161 ~~~~~ii~~~q~~r~~~~~~~~~~~~~~~~gS~~i~~~aD~vi~l~~~~~~~~~~~~~~~~~l~v~KnR~G~~g~~~l~~ 240 (242)
T cd00984 161 ELNVPVIALSQLSRGVESRADKRPMLSDLRESGSIEQDADVVMFLYRDEYYNKESESKGIAEIIVAKNRNGPTGTVELRF 240 (242)
T ss_pred HhCCeEEEecccChhhhccCCCCCCHHHHhhhcccccCCCEEEEEecccccccccCCCCceEEEEECCCCCCCeeEEEEe
Confidence 99999999999999877777889999999999999999999999999987655555678899999999999999999999
Q ss_pred Ec
Q psy2891 443 SG 444 (452)
Q Consensus 443 ~~ 444 (452)
+|
T Consensus 241 ~~ 242 (242)
T cd00984 241 DG 242 (242)
T ss_pred eC
Confidence 86
No 20
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=100.00 E-value=1.9e-39 Score=310.25 Aligned_cols=253 Identities=23% Similarity=0.309 Sum_probs=208.6
Q ss_pred ccccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccc
Q psy2891 194 VTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHK 273 (452)
Q Consensus 194 ~~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~ 273 (452)
..++||||+.||+++||+++|++++|+|+||+|||+|+++++.+++.+.|.+|+|||+||+.+++..|+.+..++++...
T Consensus 10 ~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~~~~~~~~~~~ 89 (271)
T cd01122 10 NEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLLGQYAGKRLHL 89 (271)
T ss_pred ccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHHHHHhCCCccc
Confidence 34899999999999999999999999999999999999999999986558999999999999999999999888887754
Q ss_pred cccCCCCcchHHHHHHHHHHHhC-CCeEEEcCC-CCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCC-CCCCHHHHH
Q psy2891 274 LRTGRLSSDDWPRINDSIKKINK-SQLYIDETP-SLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANS-RGENRATEI 350 (452)
Q Consensus 274 i~~g~l~~~~~~~~~~a~~~l~~-~~l~i~~~~-~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~-~~~~~~~~~ 350 (452)
... ....+++.+..+.+.+.+ ..+++.+.. ..+++++.+.++++..+++ +++|||||++.+.... ...++...+
T Consensus 90 ~~~--~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~~~~-~~~vvID~l~~l~~~~~~~~~~~~~~ 166 (271)
T cd01122 90 PDT--VFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSHG-IQHIIIDNLSIMVSDERASGDERKAL 166 (271)
T ss_pred CCc--cccccHHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHHhcCC-ceEEEECCHHHHhccCCCchhHHHHH
Confidence 432 112233455555666654 356666544 4589999999999988886 9999999999997643 234556668
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCCcchhhcC---CCCCCchhhhhhchhhhhhceeEEEecCcccccCCCCCCeEEEEE
Q psy2891 351 SEISRNLKGLAKEINCPILALSQLNRSLEQRQ---NKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIV 427 (452)
Q Consensus 351 ~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~---~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~~~~~~~~l~i 427 (452)
..+++.|+.+|+++||+|++++|++|....++ +++|.++|++||+.|++.||.||+|+|++.++ ...++.+.|.+
T Consensus 167 ~~~~~~L~~la~~~~vtvll~sq~~~~~~~~~~~~~~~~~~~d~~gs~~i~~~aD~vi~l~r~~~~e--~~~~~~~~i~v 244 (271)
T cd01122 167 DEIMTKLRGFATEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAAIGQLADNVIALERNQQAE--LDERNTTYLRI 244 (271)
T ss_pred HHHHHHHHHHHHHhCCEEEEEecccCccCCCccccCCCceEEeccCcHhHhhhccEEEEEEecCccc--cccCCcEEEEE
Confidence 89999999999999999999999999654432 47899999999999999999999999987542 12356789999
Q ss_pred eeccCC-Ccce-EEEEEEcCccceec
Q psy2891 428 SKQRNG-PIGN-IRLTFSGQYTKFNN 451 (452)
Q Consensus 428 ~KnR~G-~~g~-~~l~f~~~~~~f~~ 451 (452)
.|||+| .+|. +++.|+++|+||..
T Consensus 245 ~K~R~~~~~g~~~~~~~~~~t~~~~~ 270 (271)
T cd01122 245 LKNRFTGGTGVAGPLEYDKETGRLSP 270 (271)
T ss_pred EeeccCCCccceeeEEEECCCceecC
Confidence 999984 8887 69999999999964
No 21
>PRK05973 replicative DNA helicase; Provisional
Probab=99.96 E-value=1.1e-28 Score=226.44 Aligned_cols=170 Identities=25% Similarity=0.380 Sum_probs=136.0
Q ss_pred cccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcch
Q psy2891 204 LDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDD 283 (452)
Q Consensus 204 LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~ 283 (452)
.|+++|||++|++++|+|+||+|||+|++|++.+++. +|.+|+|||+||+++++..|+.+. |++...+.
T Consensus 54 ~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~-~Ge~vlyfSlEes~~~i~~R~~s~--g~d~~~~~-------- 122 (237)
T PRK05973 54 AEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK-SGRTGVFFTLEYTEQDVRDRLRAL--GADRAQFA-------- 122 (237)
T ss_pred HHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEEEeCCHHHHHHHHHHc--CCChHHhc--------
Confidence 6788899999999999999999999999999999985 699999999999999999999864 54432211
Q ss_pred HHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHH
Q psy2891 284 WPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKE 363 (452)
Q Consensus 284 ~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~ 363 (452)
..+.++....++.+.+. +++..+++ +++||||||+.+.... +..++..+++.|+.+|++
T Consensus 123 -------------~~~~~d~~d~~~~~~ii---~~l~~~~~-~~lVVIDsLq~l~~~~----~~~el~~~~~~Lk~~Ak~ 181 (237)
T PRK05973 123 -------------DLFEFDTSDAICADYII---ARLASAPR-GTLVVIDYLQLLDQRR----EKPDLSVQVRALKSFARE 181 (237)
T ss_pred -------------cceEeecCCCCCHHHHH---HHHHHhhC-CCEEEEEcHHHHhhcc----cchhHHHHHHHHHHHHHh
Confidence 02334434445665543 44555565 8999999999997532 122467788999999999
Q ss_pred hCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEec
Q psy2891 364 INCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYR 409 (452)
Q Consensus 364 ~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r 409 (452)
+|+|||+++|++|..+.|.+++|.++|+|.++ .+|..+|.++
T Consensus 182 ~gitvIl~sQl~r~~e~~~~~~P~laDlR~~~----~~d~~~f~~~ 223 (237)
T PRK05973 182 RGLIIVFISQIDRSFDPSAKPLPDIRDVRLPN----PLDLSLFDKA 223 (237)
T ss_pred CCCeEEEEecCccccccCCCCCCChhhcCCCC----hhhHHHhhhh
Confidence 99999999999999999999999999999766 5677776554
No 22
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.1e-26 Score=221.45 Aligned_cols=192 Identities=24% Similarity=0.375 Sum_probs=160.5
Q ss_pred CccccccCccccccc-cCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCc
Q psy2891 193 DVTGISTGFFELDKI-TSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQ 271 (452)
Q Consensus 193 ~~~~i~tg~~~LD~~-~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~ 271 (452)
...+++||+.+||++ .||+-||.+++|+|.||.||||+++|++..+|. ++ +|||+|.|+|..|+..|... .|++.
T Consensus 71 ~~~Ri~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~-~~-~vLYVsGEES~~QiklRA~R--L~~~~ 146 (456)
T COG1066 71 EEPRISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAK-RG-KVLYVSGEESLQQIKLRADR--LGLPT 146 (456)
T ss_pred ecccccCChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHh-cC-cEEEEeCCcCHHHHHHHHHH--hCCCc
Confidence 445899999999998 678999999999999999999999999999985 45 99999999999999988752 22221
Q ss_pred cccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCC--CCCCHHHH
Q psy2891 272 HKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANS--RGENRATE 349 (452)
Q Consensus 272 ~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~--~~~~~~~~ 349 (452)
.++++.. ..++++|.+.+... +|+++|||++|.+..+. ..+....+
T Consensus 147 -------------------------~~l~l~a--Et~~e~I~~~l~~~-----~p~lvVIDSIQT~~s~~~~SapGsVsQ 194 (456)
T COG1066 147 -------------------------NNLYLLA--ETNLEDIIAELEQE-----KPDLVVIDSIQTLYSEEITSAPGSVSQ 194 (456)
T ss_pred -------------------------cceEEeh--hcCHHHHHHHHHhc-----CCCEEEEeccceeecccccCCCCcHHH
Confidence 2456543 45678888776652 69999999999998765 45677889
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccccCCCCCCeEEEEEee
Q psy2891 350 ISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSK 429 (452)
Q Consensus 350 ~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~~~~~~~~l~i~K 429 (452)
+++.+..|.++||+.|++++++.|++|++ .+.|..-+|+..|+|+.+..+.. ..++.|.-.|
T Consensus 195 VRe~t~~L~~~AK~~~i~~fiVGHVTKeG-----------~IAGPrvLEHmVDtVlyFEGd~~-------~~~RiLR~vK 256 (456)
T COG1066 195 VREVAAELMRLAKTKNIAIFIVGHVTKEG-----------AIAGPRVLEHMVDTVLYFEGDRH-------SRYRILRSVK 256 (456)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEEEcccc-----------cccCchheeeeeeEEEEEeccCC-------Cceeeeehhc
Confidence 99999999999999999999999999975 36677789999999999977532 3478899999
Q ss_pred ccCCCcceE
Q psy2891 430 QRNGPIGNI 438 (452)
Q Consensus 430 nR~G~~g~~ 438 (452)
||+|+++++
T Consensus 257 NRFG~t~Ei 265 (456)
T COG1066 257 NRFGATNEL 265 (456)
T ss_pred ccCCcccce
Confidence 999998875
No 23
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=99.93 E-value=1.9e-24 Score=212.45 Aligned_cols=192 Identities=24% Similarity=0.375 Sum_probs=151.0
Q ss_pred ccccccCccccccc-cCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCcc
Q psy2891 194 VTGISTGFFELDKI-TSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQH 272 (452)
Q Consensus 194 ~~~i~tg~~~LD~~-~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~ 272 (452)
..+++||+++||++ .||+.+|++++|+|+||+|||+|++|++.+.+. .+.+|+||+.|++..++..|... .|++.
T Consensus 61 ~~ri~TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~-~g~~VlYvs~EEs~~qi~~Ra~r--lg~~~- 136 (372)
T cd01121 61 EERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAK-RGGKVLYVSGEESPEQIKLRADR--LGIST- 136 (372)
T ss_pred cCccccCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEECCcCHHHHHHHHHH--cCCCc-
Confidence 44799999999998 578999999999999999999999999999975 57899999999999998877542 23221
Q ss_pred ccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCC--CCCCHHHHH
Q psy2891 273 KLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANS--RGENRATEI 350 (452)
Q Consensus 273 ~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~--~~~~~~~~~ 350 (452)
.++++.. ..++++|.+.++ .+ ++++||||++|.+.... ...+...++
T Consensus 137 ------------------------~~l~l~~--e~~le~I~~~i~----~~-~~~lVVIDSIq~l~~~~~~~~~g~~~qv 185 (372)
T cd01121 137 ------------------------ENLYLLA--ETNLEDILASIE----EL-KPDLVIIDSIQTVYSSELTSAPGSVSQV 185 (372)
T ss_pred ------------------------ccEEEEc--cCcHHHHHHHHH----hc-CCcEEEEcchHHhhccccccCCCCHHHH
Confidence 1334432 235666666553 34 49999999999986432 123455678
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccccCCCCCCeEEEEEeec
Q psy2891 351 SEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQ 430 (452)
Q Consensus 351 ~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~~~~~~~~l~i~Kn 430 (452)
++++..|+++|+++++++++++|++++. .+.|+..+++.+|.|+.+.++.. ...+.|.+.||
T Consensus 186 r~~~~~L~~lak~~~itvilvghvtk~g-----------~~aG~~~leh~vD~Vi~le~~~~-------~~~R~Lri~Kn 247 (372)
T cd01121 186 RECTAELMRFAKERNIPIFIVGHVTKEG-----------SIAGPKVLEHMVDTVLYFEGDRH-------SEYRILRSVKN 247 (372)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeeccCCC-----------cccCcccchhhceEEEEEEcCCC-------CcEEEEEEEeC
Confidence 8999999999999999999999998753 24566789999999999876531 24578999999
Q ss_pred cCCCcceE
Q psy2891 431 RNGPIGNI 438 (452)
Q Consensus 431 R~G~~g~~ 438 (452)
|+|+++.+
T Consensus 248 R~g~~~ei 255 (372)
T cd01121 248 RFGSTNEL 255 (372)
T ss_pred CCCCCCCE
Confidence 99988764
No 24
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=99.92 E-value=4.7e-24 Score=201.40 Aligned_cols=209 Identities=17% Similarity=0.165 Sum_probs=148.4
Q ss_pred cccccCcccccccc---------------CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHH
Q psy2891 195 TGISTGFFELDKIT---------------SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLA 259 (452)
Q Consensus 195 ~~i~tg~~~LD~~~---------------gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~ 259 (452)
-|+|||++.||+++ ||+++|.+++|+|+||+|||+|++|++.+.+. +|.+|+|+|+|++.+.+.
T Consensus 2 ~~~~tGi~glD~~l~~~~~~~~~~~~~~~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~-~Ge~vlyis~Ee~~~~~~ 80 (259)
T TIGR03878 2 FGVPTGVEGLDELFFKVEIEEGKIVRKPLGGIPAYSVINITGVSDTGKSLMVEQFAVTQAS-RGNPVLFVTVESPANFVY 80 (259)
T ss_pred CCccCCchhHHHhhccccccccccccccCCCeECCcEEEEEcCCCCCHHHHHHHHHHHHHh-CCCcEEEEEecCCchHHH
Confidence 37899999999985 89999999999999999999999999999885 699999999999988777
Q ss_pred HHHHHHh--CCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCC-----CCHHHHHHHHHHHHHHcCCccEEEEc
Q psy2891 260 MRMLGSV--GKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPS-----LNVIELRANSRRLSRQCGKIGVIIID 332 (452)
Q Consensus 260 ~R~~a~~--~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~-----~t~~~i~~~i~~~~~~~~~~~~vvID 332 (452)
.++.... .|++.. . +. .++++.+... .+++++...+....++++ +++||||
T Consensus 81 ~~l~~~a~~~g~d~~-------------~-------~~-~~l~~id~~~~~~~~~~~~~l~~~l~~~i~~~~-~~~vVID 138 (259)
T TIGR03878 81 TSLKERAKAMGVDFD-------------K-------IE-ENIILIDAASSTELRENVPNLLATLAYAIKEYK-VKNTVID 138 (259)
T ss_pred HHHHHHHHHcCCCHH-------------H-------Hh-CCEEEEECCCchhhhhhHHHHHHHHHHHHHhhC-CCEEEEc
Confidence 7664322 333322 1 11 1455544322 356778888888777776 9999999
Q ss_pred CcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcc
Q psy2891 333 YLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEV 412 (452)
Q Consensus 333 ~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~ 412 (452)
+++.+.... ....+++...|..+++++++++++++|.....+.- . .+..+...+++.||.||.|.....
T Consensus 139 Sls~l~~~~-----~~~~r~~~~~L~~~lk~~~~t~ll~~e~~~~~~~~-~-----~~~~~~~~~~~l~D~vI~L~~~~~ 207 (259)
T TIGR03878 139 SITGLYEAK-----EMMAREIVRQLFNFMKKWYQTALFVSQKRSGHEEL-S-----AEAAGGYAVSHIVDGTIVLAKQLI 207 (259)
T ss_pred CchHhcccc-----hHHHHHHHHHHHHHHHHcCCeEEEEeccccCcccc-c-----ccccCCcceeEeeccEEEEeeeec
Confidence 998764321 13356778889999999999999999976532110 0 022223357899999999985321
Q ss_pred ccc-------CCCCCCeEEEEEeeccCCCcce
Q psy2891 413 YNQ-------NSADKGIAEIIVSKQRNGPIGN 437 (452)
Q Consensus 413 ~~~-------~~~~~~~~~l~i~KnR~G~~g~ 437 (452)
... +....-.+.+.|.|.|......
T Consensus 208 ~~~~~~~~~~~~~~~~~R~l~I~KmRg~~h~~ 239 (259)
T TIGR03878 208 MSRFDASLYKKPIGEIVRLFRIDGCRMCGHDT 239 (259)
T ss_pred cchhhhhhccccccceEEEEEEEEccCCCCCC
Confidence 100 0012234679999999875443
No 25
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=99.92 E-value=9.3e-24 Score=213.36 Aligned_cols=193 Identities=26% Similarity=0.394 Sum_probs=150.1
Q ss_pred CccccccCccccccc-cCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCc
Q psy2891 193 DVTGISTGFFELDKI-TSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQ 271 (452)
Q Consensus 193 ~~~~i~tg~~~LD~~-~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~ 271 (452)
...+++||+++||++ .||+.+|++++|+|+||+|||+|++|++.+++. .|.+|+|+|+|++..++..|... .|++.
T Consensus 72 ~~~ri~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~-~g~kvlYvs~EEs~~qi~~ra~r--lg~~~ 148 (454)
T TIGR00416 72 EVPRFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAK-NQMKVLYVSGEESLQQIKMRAIR--LGLPE 148 (454)
T ss_pred ccCccccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHh-cCCcEEEEECcCCHHHHHHHHHH--cCCCh
Confidence 345899999999998 579999999999999999999999999999875 57899999999999999887643 23221
Q ss_pred cccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCC--CCCCHHHH
Q psy2891 272 HKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANS--RGENRATE 349 (452)
Q Consensus 272 ~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~--~~~~~~~~ 349 (452)
. ++++.. ..++++|.+.+. +. ++++||||++|.+.... .......+
T Consensus 149 ~-------------------------~l~~~~--e~~~~~I~~~i~----~~-~~~~vVIDSIq~l~~~~~~~~~g~~~q 196 (454)
T TIGR00416 149 P-------------------------NLYVLS--ETNWEQICANIE----EE-NPQACVIDSIQTLYSPDISSAPGSVSQ 196 (454)
T ss_pred H-------------------------HeEEcC--CCCHHHHHHHHH----hc-CCcEEEEecchhhcccccccCCCCHHH
Confidence 1 334433 235666666553 34 49999999999987543 12334456
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccccCCCCCCeEEEEEee
Q psy2891 350 ISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSK 429 (452)
Q Consensus 350 ~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~~~~~~~~l~i~K 429 (452)
+++++..|+.+|+++|+++++++|.+++. .+.|+..+++.+|.|+.|.+.. ....+.+.+.|
T Consensus 197 ~r~~~~~L~~~ak~~giTvllt~hvtkeg-----------~~aG~~~le~lvD~VI~Le~~~-------~~~~R~L~v~K 258 (454)
T TIGR00416 197 VRECTAELMRLAKTRGIAIFIVGHVTKEG-----------SIAGPKVLEHMVDTVLYFEGDR-------DSRFRILRSVK 258 (454)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEeccccCC-----------ccCCcccEeeeceEEEEEeccC-------CCcEEEEEEec
Confidence 78889999999999999999999998742 2455667899999999997642 12356899999
Q ss_pred ccCCCcceE
Q psy2891 430 QRNGPIGNI 438 (452)
Q Consensus 430 nR~G~~g~~ 438 (452)
||+|+++.+
T Consensus 259 ~R~g~~~e~ 267 (454)
T TIGR00416 259 NRFGATNEI 267 (454)
T ss_pred CCCCCCCcE
Confidence 999988764
No 26
>PRK11823 DNA repair protein RadA; Provisional
Probab=99.92 E-value=1.6e-23 Score=211.64 Aligned_cols=193 Identities=24% Similarity=0.363 Sum_probs=149.6
Q ss_pred CccccccCccccccc-cCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCc
Q psy2891 193 DVTGISTGFFELDKI-TSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQ 271 (452)
Q Consensus 193 ~~~~i~tg~~~LD~~-~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~ 271 (452)
...+++||+++||++ .||+.+|++++|+|+||+|||+|++|++.+.+. +|.+|+|+++|++..++..|... .|++.
T Consensus 58 ~~~ri~TGi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~-~g~~vlYvs~Ees~~qi~~ra~r--lg~~~ 134 (446)
T PRK11823 58 EEPRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAA-AGGKVLYVSGEESASQIKLRAER--LGLPS 134 (446)
T ss_pred cCCcccCCcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEEccccHHHHHHHHHH--cCCCh
Confidence 345799999999998 579999999999999999999999999999984 68899999999999999888532 33322
Q ss_pred cccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCC--CCCCHHHH
Q psy2891 272 HKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANS--RGENRATE 349 (452)
Q Consensus 272 ~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~--~~~~~~~~ 349 (452)
. ++++.. ..+++++.+.++ +. ++++||||+++.+.... ...++..+
T Consensus 135 ~-------------------------~l~~~~--e~~l~~i~~~i~----~~-~~~lVVIDSIq~l~~~~~~~~~g~~~q 182 (446)
T PRK11823 135 D-------------------------NLYLLA--ETNLEAILATIE----EE-KPDLVVIDSIQTMYSPELESAPGSVSQ 182 (446)
T ss_pred h-------------------------cEEEeC--CCCHHHHHHHHH----hh-CCCEEEEechhhhccccccCCCCCHHH
Confidence 1 244432 234566665543 34 49999999999887542 12345566
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccccCCCCCCeEEEEEee
Q psy2891 350 ISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSK 429 (452)
Q Consensus 350 ~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~~~~~~~~l~i~K 429 (452)
+++++..|+.+|+++|+++++++|++++. .+.++..+++.+|.|+.+.++. ....+.|.+.|
T Consensus 183 vr~~~~~L~~~ak~~~itvilv~hvtk~~-----------~~ag~~~lehlvD~Vi~le~~~-------~~~~R~l~i~K 244 (446)
T PRK11823 183 VRECAAELMRLAKQRGIAVFLVGHVTKEG-----------AIAGPRVLEHMVDTVLYFEGDR-------HSRYRILRAVK 244 (446)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeeccCCC-----------CcCCcchhhhhCeEEEEEEcCC-------CCceEEEEEcc
Confidence 88889999999999999999999998753 1345567899999999886421 23457799999
Q ss_pred ccCCCcceE
Q psy2891 430 QRNGPIGNI 438 (452)
Q Consensus 430 nR~G~~g~~ 438 (452)
||+|+++.+
T Consensus 245 ~R~g~~~e~ 253 (446)
T PRK11823 245 NRFGATNEI 253 (446)
T ss_pred CCCCCCCce
Confidence 999998864
No 27
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=99.91 E-value=4e-23 Score=193.06 Aligned_cols=214 Identities=20% Similarity=0.251 Sum_probs=150.3
Q ss_pred ccccCccccccc-cCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccc
Q psy2891 196 GISTGFFELDKI-TSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKL 274 (452)
Q Consensus 196 ~i~tg~~~LD~~-~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i 274 (452)
.++||++.||++ .||+++|++++|+|+||+|||+|++|++.+.+ ++|.+|+|||+|++++++.+++.+ .|++...+
T Consensus 2 ri~tGi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~-~~ge~~lyvs~ee~~~~i~~~~~~--~g~~~~~~ 78 (237)
T TIGR03877 2 RVKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGL-QMGEPGIYVALEEHPVQVRRNMAQ--FGWDVRKY 78 (237)
T ss_pred ccccCcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCcEEEEEeeCCHHHHHHHHHH--hCCCHHHH
Confidence 489999999996 68999999999999999999999999999987 479999999999999999999764 45555433
Q ss_pred c-cCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHH
Q psy2891 275 R-TGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEI 353 (452)
Q Consensus 275 ~-~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i 353 (452)
. .|.+.--+. ...........+.++.+. ..+++++...+++...+++ +++||||+|+.+.... . .....+
T Consensus 79 ~~~g~l~~~d~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~i~~~~-~~~vVIDSls~l~~~~----~-~~~r~~ 149 (237)
T TIGR03877 79 EEEGKFAIVDA--FTGGIGEAAEREKYVVKD-PTDVRELIDVLRQAIRDIN-AKRVVIDSVTTLYITK----P-AMARSI 149 (237)
T ss_pred hhcCCEEEEec--cccccccccccccccccC-cccHHHHHHHHHHHHHHhC-CCEEEEcChhHhhcCC----h-HHHHHH
Confidence 2 222210000 000000001112233222 2367788888888877775 9999999999875432 1 123366
Q ss_pred HHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccccCCCCCCeEEEEEeeccCC
Q psy2891 354 SRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQRNG 433 (452)
Q Consensus 354 ~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~~~~~~~~l~i~KnR~G 433 (452)
+..|+.+++++|+++++++|.+-... + +. ...+++.||.||.|...+.. ....+.+.|.|.|.+
T Consensus 150 l~~l~~~lk~~~~t~llt~~~~~~~~------~----~~-~~~~~~~~D~vI~L~~~~~~-----~~~~R~l~i~K~Rg~ 213 (237)
T TIGR03877 150 VMQLKRVLSGLGCTSIFVSQVSVGER------G----FG-GPGVEHAVDGIIRLDLDEID-----GELKRSLIVWKMRGT 213 (237)
T ss_pred HHHHHHHHHhCCCEEEEEECcccccc------c----cc-ccceEEEEeEEEEEEEEeeC-----CceEEEEEEEECCCC
Confidence 78899999999999999999874210 1 00 12468899999999755321 123467999999988
Q ss_pred Ccce
Q psy2891 434 PIGN 437 (452)
Q Consensus 434 ~~g~ 437 (452)
..+.
T Consensus 214 ~~~~ 217 (237)
T TIGR03877 214 KHSM 217 (237)
T ss_pred CCCC
Confidence 6554
No 28
>KOG2373|consensus
Probab=99.90 E-value=2e-23 Score=193.55 Aligned_cols=260 Identities=19% Similarity=0.228 Sum_probs=200.3
Q ss_pred cCcccHHHHHHHHHHHHHHHHhCCCCCCCcccccc-CccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCC
Q psy2891 165 KGFQQIQPLLNRVIKRINKLHNRGTNDNDVTGIST-GFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENK 243 (452)
Q Consensus 165 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~t-g~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g 243 (452)
+++.++.+.-++++.++.+. ..+.|+.| .|+.|+++++|.+||+++++.|++|+|||||+...++..+. +|
T Consensus 230 k~i~sf~~mRe~ilseL~N~-------e~v~G~~WkRFpvLNk~LkGhR~GElTvlTGpTGsGKTTFlsEYsLDL~~-QG 301 (514)
T KOG2373|consen 230 KGIRSFTDMREGILSELLNT-------ERVVGFQWKRFPVLNKYLKGHRPGELTVLTGPTGSGKTTFLSEYSLDLFT-QG 301 (514)
T ss_pred hhhhhHHHHHHHHHHHHhhh-------hhhhceeehhhhHHHHHhccCCCCceEEEecCCCCCceeEehHhhHHHHh-hh
Confidence 45667766666666555432 24557775 79999999999999999999999999999999999999985 79
Q ss_pred CcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEc-CCCCCHHHHHHHHHHHHHH
Q psy2891 244 LPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDE-TPSLNVIELRANSRRLSRQ 322 (452)
Q Consensus 244 ~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~-~~~~t~~~i~~~i~~~~~~ 322 (452)
.++||-|+|++...++.-|+...+|-... +....+....+.....|+|+.- .+.-.++...+.|.....-
T Consensus 302 VnTLwgSFEi~n~rla~~mL~Qyagyrl~---------drl~~y~HWadrFErlplyfmtfhgqq~~~~vi~~i~ha~yV 372 (514)
T KOG2373|consen 302 VNTLWGSFEIPNKRLAHWMLVQYAGYRLL---------DRLNSYKHWADRFERLPLYFMTFHGQQFMEKVINEIAHAIYV 372 (514)
T ss_pred hhheeeeeecchHHHHHHHHHHHccCchH---------hhhhhhhHHHHHHhccchHhhhhcccchHHHHHHHHHHHHHH
Confidence 99999999999999999999877765332 2233344455556667887643 2233455566666555555
Q ss_pred cCCccEEEEcCcchhccCC-CCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhh
Q psy2891 323 CGKIGVIIIDYLQLMSANS-RGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDA 401 (452)
Q Consensus 323 ~~~~~~vvID~l~~i~~~~-~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~a 401 (452)
++ +.-||||+||.|-... -..++......|+..++++|.++||+|-++.|..|+. .++...-+.+-||....|.|
T Consensus 373 ~d-i~HViIDNLQFmmg~~~~~~Drf~~QD~iig~fR~fAT~nn~HvTlVvHPRKed---~d~El~t~s~fGsAkatQEA 448 (514)
T KOG2373|consen 373 ED-IQHVIIDNLQFMMGQGMMALDRFHLQDRIIGYFRQFATQNNIHVTLVVHPRKED---GDTELDTQSFFGSAKATQEA 448 (514)
T ss_pred Hh-hhhhhhhhHHHHhccchhccchhhhHHHHHHHHHHHhhccceeEEEEecccccC---CCceeeehhhcccccccccc
Confidence 65 8999999999887654 2345666678899999999999999999999998863 45667778899999999999
Q ss_pred ceeEEEecCcccccCCCCCCeEEEEEeeccC-CCcceEEEEEEcCccce
Q psy2891 402 DVILFIYRDEVYNQNSADKGIAEIIVSKQRN-GPIGNIRLTFSGQYTKF 449 (452)
Q Consensus 402 D~vl~l~r~~~~~~~~~~~~~~~l~i~KnR~-G~~g~~~l~f~~~~~~f 449 (452)
|.|+.+.+.... ..+|...|.|.|||+ |..|..++.|+.+-..|
T Consensus 449 DNVliiQdkrl~----~~rgkkyLqi~KNRy~Gdvg~~pLEf~kn~lty 493 (514)
T KOG2373|consen 449 DNVLIIQDKRLD----RDRGKKYLQILKNRYYGDVGSDPLEFVKNPLTY 493 (514)
T ss_pred ccEEEEeecccc----cccchhhhhhhhhcccCcccccceeeccCCccc
Confidence 999999765322 245677899999996 88999888888776555
No 29
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=99.90 E-value=3.8e-22 Score=185.89 Aligned_cols=214 Identities=23% Similarity=0.212 Sum_probs=151.3
Q ss_pred cccCccccccc-cCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccc
Q psy2891 197 ISTGFFELDKI-TSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLR 275 (452)
Q Consensus 197 i~tg~~~LD~~-~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~ 275 (452)
++||++.||++ .||+++|++++|.|+||+|||+|+++++.+.+. .|.+|+|+++|++.+++..++. ..|++..++.
T Consensus 2 i~tGi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~-~g~~~~~is~e~~~~~i~~~~~--~~g~~~~~~~ 78 (229)
T TIGR03881 2 LSTGVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLR-DGDPVIYVTTEESRESIIRQAA--QFGMDFEKAI 78 (229)
T ss_pred cCCChhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHh-cCCeEEEEEccCCHHHHHHHHH--HhCCCHHHHh
Confidence 78999999998 589999999999999999999999999998874 6899999999999999988843 4566655432
Q ss_pred -cCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcC-CccEEEEcCcchhccCCCCCCHHHHHHHH
Q psy2891 276 -TGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCG-KIGVIIIDYLQLMSANSRGENRATEISEI 353 (452)
Q Consensus 276 -~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~-~~~~vvID~l~~i~~~~~~~~~~~~~~~i 353 (452)
.+.+.-.+ .+.. -..... .....+++++...++++.++++ ++++||||+++.+.... . .....+
T Consensus 79 ~~~~l~i~d--~~~~----~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~---~--~~~r~~ 144 (229)
T TIGR03881 79 EEGKLVIID--ALMK----EKEDEW---SLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDK---P--AMARKY 144 (229)
T ss_pred hcCCEEEEE--cccc----cccccc---ccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccC---h--HHHHHH
Confidence 12221100 0000 000000 0135688999999999887764 47899999999986532 1 123567
Q ss_pred HHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccccCCCCCCeEEEEEeeccCC
Q psy2891 354 SRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQRNG 433 (452)
Q Consensus 354 ~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~~~~~~~~l~i~KnR~G 433 (452)
+..|+.+++++|+++++++|.+..... + ....+++.||.|+.|...+.. ....+.+.|.|.|..
T Consensus 145 ~~~l~~~l~~~~~tvil~~~~~~~~~~-----~------~~~~~~~l~D~vI~L~~~~~~-----~~~~R~i~i~K~R~~ 208 (229)
T TIGR03881 145 SYYLKRVLNRWNFTILLTSQYAITTSQ-----A------FGFGIEHVADGIIRFRKVVVD-----GELRRYLIVEKMRQT 208 (229)
T ss_pred HHHHHHHHHhCCCEEEEEecccccCCC-----C------cccceEEEEeEEEEEEEeccC-----CcEEEEEEEEeccCC
Confidence 788999999999999999997642210 1 012478899999999865421 223467999999986
Q ss_pred Cc--ceEEEEEE
Q psy2891 434 PI--GNIRLTFS 443 (452)
Q Consensus 434 ~~--g~~~l~f~ 443 (452)
.. +..+|...
T Consensus 209 ~~~~~~~~~~I~ 220 (229)
T TIGR03881 209 NHDKRAWEIDIV 220 (229)
T ss_pred CCCCceeEEEEc
Confidence 54 33444443
No 30
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=99.89 E-value=4.1e-22 Score=185.35 Aligned_cols=206 Identities=19% Similarity=0.233 Sum_probs=148.8
Q ss_pred cccCccccccc-cCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCC------CcEEEEeCCCC--HHHHHHHHHHHhC
Q psy2891 197 ISTGFFELDKI-TSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENK------LPVAIFSMEMS--GIQLAMRMLGSVG 267 (452)
Q Consensus 197 i~tg~~~LD~~-~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g------~~vl~~s~E~~--~~~i~~R~~a~~~ 267 (452)
++||++.||++ .||+++|+++.|+|+||+|||+|+++++.+.+. .+ .+|+||+.|.+ ++.+...... .
T Consensus 1 i~tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~-~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~--~ 77 (226)
T cd01393 1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQL-PGELGGLEGKVVYIDTEGAFRPERLVQLAVR--F 77 (226)
T ss_pred CCCCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhc-ccccCCCcceEEEEecCCCCCHHHHHHHHHH--h
Confidence 58999999998 589999999999999999999999999999874 45 89999999986 3323222211 1
Q ss_pred CCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHH---HcCCccEEEEcCcchhccCC-CC
Q psy2891 268 KLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSR---QCGKIGVIIIDYLQLMSANS-RG 343 (452)
Q Consensus 268 ~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~---~~~~~~~vvID~l~~i~~~~-~~ 343 (452)
+.+ . . .+ ..++++.+. .+.+++...++.+.. .. ++++||||+|+.+.... ..
T Consensus 78 ~~~----------~---~-------~~-~~~i~~~~~--~~~~~~~~~l~~~~~~~~~~-~~~lvVIDsis~l~~~~~~~ 133 (226)
T cd01393 78 GLD----------P---E-------EV-LDNIYVARP--YNGEQQLEIVEELERIMSSG-RVDLVVVDSVAALFRKEFIG 133 (226)
T ss_pred ccc----------h---h-------hh-hccEEEEeC--CCHHHHHHHHHHHHHHhhcC-CeeEEEEcCcchhhhhhhcC
Confidence 111 0 0 01 124665543 356777777777654 44 49999999999876432 11
Q ss_pred ----CCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhc--CCCCCCchhhhhhchhhhhhceeEEEecCcccccCC
Q psy2891 344 ----ENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQR--QNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNS 417 (452)
Q Consensus 344 ----~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r--~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~ 417 (452)
..+...+..+++.|+.+|++++|+||+++|+++..... ...+| .++..+++.+|.++.|.+.+..
T Consensus 134 ~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq~~~~~~~~~~~~~~p-----~~G~~~~~~~~~ri~l~~~~~~---- 204 (226)
T cd01393 134 RGMLAERARLLSQALRKLLRLADKFNVAVVFTNQVRAKVDVMFGDPETP-----AGGNALAHASTTRLDLRKGRGI---- 204 (226)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEEEeeecccccCCCccc-----cCchhhhCcccEEEEEEecCCc----
Confidence 23445678899999999999999999999998765422 11223 3456899999999999876421
Q ss_pred CCCCeEEEEEeeccCCCcceEE
Q psy2891 418 ADKGIAEIIVSKQRNGPIGNIR 439 (452)
Q Consensus 418 ~~~~~~~l~i~KnR~G~~g~~~ 439 (452)
....+.+.+.|+++.+.|.+.
T Consensus 205 -~~~~r~~~~~k~~~~~~~~~~ 225 (226)
T cd01393 205 -IGERRIAKVVKSPALPEAEAE 225 (226)
T ss_pred -cCcEEEEEEEeCCCCCCcccc
Confidence 124567999999999988754
No 31
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=99.89 E-value=1.1e-21 Score=189.71 Aligned_cols=222 Identities=16% Similarity=0.226 Sum_probs=150.9
Q ss_pred HHHHHHHHhCCCCCCCccccccCccccccc-cCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHh--C---CCcEEEEeC
Q psy2891 178 IKRINKLHNRGTNDNDVTGISTGFFELDKI-TSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE--N---KLPVAIFSM 251 (452)
Q Consensus 178 ~~~i~~~~~~~~~~~~~~~i~tg~~~LD~~-~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~--~---g~~vl~~s~ 251 (452)
+...++.+... ....+++||++.||.+ .||+++|+++.|+|+||+|||+|+++++.+++.. . +.+|+||+.
T Consensus 62 ~~t~~~l~~~~---~~~~~~~tg~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdt 138 (316)
T TIGR02239 62 FTTATEFHQRR---QEVIQLTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDT 138 (316)
T ss_pred cccHHHHHhcc---cccceeCCCCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEEC
Confidence 33444444333 3566899999999996 7899999999999999999999999999876532 2 248999999
Q ss_pred CC--CHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHH---HHHcCCc
Q psy2891 252 EM--SGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRL---SRQCGKI 326 (452)
Q Consensus 252 E~--~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~---~~~~~~~ 326 (452)
|. +++++..... ..+++...+ + .++++.. ..+.+++...+..+ .... ++
T Consensus 139 E~~f~~~Rl~~ia~--~~~~~~~~~-------------------l--~~i~~~~--~~~~~~~~~~l~~~~~~~~~~-~~ 192 (316)
T TIGR02239 139 EGTFRPERLLAIAE--RYGLNPEDV-------------------L--DNVAYAR--AYNTDHQLQLLQQAAAMMSES-RF 192 (316)
T ss_pred CCCCCHHHHHHHHH--HcCCChHHh-------------------h--ccEEEEe--cCChHHHHHHHHHHHHhhccC-Cc
Confidence 99 4554444332 223322111 1 1244332 23455554444443 3333 59
Q ss_pred cEEEEcCcchhccCC-CC--C--CHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhc------CCCCCCchhhhhhc
Q psy2891 327 GVIIIDYLQLMSANS-RG--E--NRATEISEISRNLKGLAKEINCPILALSQLNRSLEQR------QNKRPIMSDLRESG 395 (452)
Q Consensus 327 ~~vvID~l~~i~~~~-~~--~--~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r------~~~~p~l~dl~~S~ 395 (452)
++||||+++.+.... .+ . .+...+.+++..|+.+|+++|++|+++.|+....... ...+|. +..
T Consensus 193 ~LvVIDSI~al~r~~~~~~~~~~~rq~~l~~~~~~L~~la~~~~vavv~tNqv~~~~~~~~~~~~g~~~~p~-----gG~ 267 (316)
T TIGR02239 193 ALLIVDSATALYRTDFSGRGELSARQMHLARFLRSLQRLADEFGVAVVITNQVVAQVDGAGSMFAGDPKKPI-----GGN 267 (316)
T ss_pred cEEEEECcHHHhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceEEecCCccccccCCCCcCC-----chH
Confidence 999999999875322 11 1 2234567899999999999999999999998543221 123453 344
Q ss_pred hhhhhhceeEEEecCcccccCCCCCCeEEEEEeeccCCCcceEEEE
Q psy2891 396 AIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQRNGPIGNIRLT 441 (452)
Q Consensus 396 ~ie~~aD~vl~l~r~~~~~~~~~~~~~~~l~i~KnR~G~~g~~~l~ 441 (452)
.+++.+++.+.|.+.+ .+.+.+.+.|+|+++.+.+.|.
T Consensus 268 ~~~h~~~~ri~l~k~~--------~~~R~~~v~ksp~~p~~~~~f~ 305 (316)
T TIGR02239 268 IMAHASTTRLSLRKGR--------GEQRICKIYDSPCLPESEAMFA 305 (316)
T ss_pred HHHhhccEEEEEEecC--------CCeEEEEEEECCCCCCeEEEEE
Confidence 6899999999998752 1357899999999999885544
No 32
>PRK04328 hypothetical protein; Provisional
Probab=99.89 E-value=1e-21 Score=184.59 Aligned_cols=214 Identities=21% Similarity=0.254 Sum_probs=147.3
Q ss_pred ccccCccccccc-cCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccc
Q psy2891 196 GISTGFFELDKI-TSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKL 274 (452)
Q Consensus 196 ~i~tg~~~LD~~-~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i 274 (452)
.++||++.||++ .||+++|.+++|.|+||+|||+|++|++.+.+. .|.+|+|||+|++++++.+++-+ .|++....
T Consensus 4 rv~tGi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~-~ge~~lyis~ee~~~~i~~~~~~--~g~d~~~~ 80 (249)
T PRK04328 4 RVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ-MGEPGVYVALEEHPVQVRRNMRQ--FGWDVRKY 80 (249)
T ss_pred eecCCchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHh-cCCcEEEEEeeCCHHHHHHHHHH--cCCCHHHH
Confidence 689999999998 578999999999999999999999999999864 69999999999999998888754 46655433
Q ss_pred c-cCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHH
Q psy2891 275 R-TGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEI 353 (452)
Q Consensus 275 ~-~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i 353 (452)
. .|.+.--+. ............-++.. ...+++++...++....+++ +++||||+++.+.... . .....+
T Consensus 81 ~~~~~l~iid~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~i~~~~-~~~vVIDSlt~l~~~~----~-~~~r~~ 151 (249)
T PRK04328 81 EEEGKFAIVDA--FTGGIGSAAKREKYVVK-DPDDVRELIDVLRQAIKDIG-AKRVVIDSVSTLYLTK----P-AMARSI 151 (249)
T ss_pred hhcCCEEEEec--ccccccccccccccccc-CcccHHHHHHHHHHHHHhhC-CCEEEEeChhHhhcCC----h-HHHHHH
Confidence 2 122110000 00000000001111111 12356677777777777775 9999999999875432 1 123466
Q ss_pred HHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccccCCCCCCeEEEEEeeccCC
Q psy2891 354 SRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQRNG 433 (452)
Q Consensus 354 ~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~~~~~~~~l~i~KnR~G 433 (452)
+..|+.+++++||++++++|.+... + + +. ...+++.||.|+.|...+.. ....+.+.|.|.|..
T Consensus 152 ~~~l~~~lk~~g~t~llt~e~~~~~--~----~----~~-~~~~~~~~D~vI~L~~~~~~-----~~~~R~l~I~K~Rg~ 215 (249)
T PRK04328 152 VMQLKRVLSGLGCTAIFVSQVSVGE--R----G----FG-GPGVEHAVDGIIRLDLDEID-----GELKRSLIVWKMRGT 215 (249)
T ss_pred HHHHHHHHHhCCCEEEEEECccccc--c----c----cC-CCCcEEEEEEEEEEEEEecC-----CcEEEEEEEEEccCC
Confidence 7888888999999999999987421 0 1 11 12467889999999765421 223467999999988
Q ss_pred Ccce
Q psy2891 434 PIGN 437 (452)
Q Consensus 434 ~~g~ 437 (452)
..+.
T Consensus 216 ~~~~ 219 (249)
T PRK04328 216 KHSM 219 (249)
T ss_pred CCCC
Confidence 6554
No 33
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=99.89 E-value=4.1e-22 Score=185.24 Aligned_cols=206 Identities=20% Similarity=0.200 Sum_probs=148.0
Q ss_pred cccCcccccccc-CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccc
Q psy2891 197 ISTGFFELDKIT-SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLR 275 (452)
Q Consensus 197 i~tg~~~LD~~~-gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~ 275 (452)
+|||++.||+++ ||+++|.+++|.|+||+|||+|++|++.+.+.+.|.+|+|||+|.+++++.+++.+ .|++...+
T Consensus 1 V~TGI~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s--~g~d~~~~- 77 (226)
T PF06745_consen 1 VPTGIPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKS--FGWDLEEY- 77 (226)
T ss_dssp E--SSTTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHT--TTS-HHHH-
T ss_pred CCCCchhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHH--cCCcHHHH-
Confidence 589999999985 89999999999999999999999999999986328999999999999999999874 35444322
Q ss_pred cCCCCcchHHHHHHHHHHHhCCCeEEEcCC-------CCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHH
Q psy2891 276 TGRLSSDDWPRINDSIKKINKSQLYIDETP-------SLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRAT 348 (452)
Q Consensus 276 ~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~-------~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~ 348 (452)
.....+.+.+.. ..+++++...+.....+.+ +++||||+|+.+ ... ....
T Consensus 78 ------------------~~~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~-~~~vVIDsls~l-~~~---~~~~ 134 (226)
T PF06745_consen 78 ------------------EDSGKLKIIDAFPERIGWSPNDLEELLSKIREAIEELK-PDRVVIDSLSAL-LLY---DDPE 134 (226)
T ss_dssp ------------------HHTTSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHT-SSEEEEETHHHH-TTS---SSGG
T ss_pred ------------------hhcCCEEEEecccccccccccCHHHHHHHHHHHHHhcC-CCEEEEECHHHH-hhc---CCHH
Confidence 122345554421 3578888888888877775 899999999999 322 1123
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhh-hhceeEEEecCcccccCCCCCCeEEEEE
Q psy2891 349 EISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQ-DADVILFIYRDEVYNQNSADKGIAEIIV 427 (452)
Q Consensus 349 ~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~-~aD~vl~l~r~~~~~~~~~~~~~~~l~i 427 (452)
.+...+..|....++.|+++++++|....... .....+++ .||.||.|...+.. ..-.+.|.|
T Consensus 135 ~~r~~l~~l~~~l~~~~~t~llt~~~~~~~~~-----------~~~~~i~~~l~D~vI~L~~~~~~-----~~~~R~l~I 198 (226)
T PF06745_consen 135 ELRRFLRALIKFLKSRGVTTLLTSEMPSGSED-----------DGTFGIEHYLADGVIELRYEEEG-----GRIRRRLRI 198 (226)
T ss_dssp GHHHHHHHHHHHHHHTTEEEEEEEEESSSSSS-----------SSSTSHHHHHSSEEEEEEEEEET-----TEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEccccCccc-----------ccccchhhhcccEEEEEEEEeeC-----CEEEEEEEE
Confidence 35567888888889999999999986542211 11335666 99999999876432 133568999
Q ss_pred eeccCCCc--ceEEEEEEc
Q psy2891 428 SKQRNGPI--GNIRLTFSG 444 (452)
Q Consensus 428 ~KnR~G~~--g~~~l~f~~ 444 (452)
.|.|..+. +..++...+
T Consensus 199 ~K~Rg~~~~~~~~~f~I~~ 217 (226)
T PF06745_consen 199 VKMRGSRHSTGIHPFEITP 217 (226)
T ss_dssp EEETTS----BEEEEEEET
T ss_pred EEcCCCCCCCcEEEEEEEC
Confidence 99998764 334555544
No 34
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=99.88 E-value=2.6e-21 Score=179.70 Aligned_cols=203 Identities=20% Similarity=0.296 Sum_probs=139.6
Q ss_pred ccccCcccccccc-CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC-CCHHHHHHHHHHHhCCCCccc
Q psy2891 196 GISTGFFELDKIT-SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME-MSGIQLAMRMLGSVGKLDQHK 273 (452)
Q Consensus 196 ~i~tg~~~LD~~~-gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E-~~~~~i~~R~~a~~~~i~~~~ 273 (452)
.++||++.||+++ ||+++|.++.|+|+||+|||+|+++++.+.+. .|.+|+||++| .+.+.+.+... .
T Consensus 4 ~i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~-~~~~v~yi~~e~~~~~r~~~~~~----~----- 73 (225)
T PRK09361 4 RLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAK-NGKKVIYIDTEGLSPERFKQIAG----E----- 73 (225)
T ss_pred cccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEECCCCCHHHHHHHHh----h-----
Confidence 5899999999985 89999999999999999999999999999975 68999999999 44443322111 0
Q ss_pred cccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHH--cCCccEEEEcCcchhccCC-----CCCCH
Q psy2891 274 LRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQ--CGKIGVIIIDYLQLMSANS-----RGENR 346 (452)
Q Consensus 274 i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~--~~~~~~vvID~l~~i~~~~-----~~~~~ 346 (452)
++..+ + .++++.+. .+.++....++.+... . ++++||||++..+.... ....+
T Consensus 74 ---------~~~~~------~--~~~~~~~~--~~~~~~~~~i~~~~~~~~~-~~~lvVIDsi~al~~~~~~~~~~~~~~ 133 (225)
T PRK09361 74 ---------DFEEL------L--SNIIIFEP--SSFEEQSEAIRKAEKLAKE-NVGLIVLDSATSLYRLELEDEEDNSKL 133 (225)
T ss_pred ---------ChHhH------h--hCeEEEeC--CCHHHHHHHHHHHHHHHHh-cccEEEEeCcHHHhHHHhcCCccHHHH
Confidence 11111 1 14555543 3444444333332211 4 59999999998765321 11122
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccccCCCCCCeEEEE
Q psy2891 347 ATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEII 426 (452)
Q Consensus 347 ~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~~~~~~~~l~ 426 (452)
...+..++..|+.+|+++||+|++++|++...... ..+| .++..+++.+|.++.|.+.+ .+.+.+.
T Consensus 134 ~~~l~~~l~~L~~~a~~~~v~vi~tnq~~~~~~~~-~~~~-----~gg~~~~~~~d~ii~l~~~~--------~~~r~~~ 199 (225)
T PRK09361 134 NRELGRQLTHLLKLARKHDLAVVITNQVYSDIDSD-GLRP-----LGGHTLEHWSKTILRLEKFR--------NGKRRAT 199 (225)
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEEccceecCCCC-cccC-----CCcchhhhhccEEEEEEEcc--------CCeEEEE
Confidence 34567777889999999999999999998643211 1112 24557899999999997731 2346778
Q ss_pred EeeccCCCcce-EEEEE
Q psy2891 427 VSKQRNGPIGN-IRLTF 442 (452)
Q Consensus 427 i~KnR~G~~g~-~~l~f 442 (452)
+.|+|..+.|. ..+..
T Consensus 200 i~k~~~~~~~~~~~f~I 216 (225)
T PRK09361 200 LEKHRSRPEGESAEFRI 216 (225)
T ss_pred EEECCCCCCCCeEEEEE
Confidence 99999877765 34443
No 35
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=99.88 E-value=3.3e-21 Score=187.10 Aligned_cols=212 Identities=17% Similarity=0.215 Sum_probs=146.4
Q ss_pred CCccccccCccccccc-cCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHh-----CCCcEEEEeCCC--CHHHHHHHHH
Q psy2891 192 NDVTGISTGFFELDKI-TSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE-----NKLPVAIFSMEM--SGIQLAMRML 263 (452)
Q Consensus 192 ~~~~~i~tg~~~LD~~-~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~-----~g~~vl~~s~E~--~~~~i~~R~~ 263 (452)
....+++||++.||++ .||+++|+++.|+|+||+|||+|+++++.+++.. .+.+|+||++|. +++++.+...
T Consensus 100 ~~~~~i~tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~ 179 (342)
T PLN03186 100 QEIIQITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAE 179 (342)
T ss_pred cCcceeCCCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHH
Confidence 3566899999999996 7899999999999999999999999999887531 234899999999 4555543322
Q ss_pred HHhCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHH---HHHcCCccEEEEcCcchhccC
Q psy2891 264 GSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRL---SRQCGKIGVIIIDYLQLMSAN 340 (452)
Q Consensus 264 a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~---~~~~~~~~~vvID~l~~i~~~ 340 (452)
..+++...+ + .++++.. ..+.+++...+..+ .... ++++||||+++.+...
T Consensus 180 --~~~~~~~~~-------------------l--~~i~~~~--~~~~e~~~~ll~~~~~~~~~~-~~~LIVIDSI~alfr~ 233 (342)
T PLN03186 180 --RFGLNGADV-------------------L--ENVAYAR--AYNTDHQSELLLEAASMMAET-RFALMIVDSATALYRT 233 (342)
T ss_pred --HcCCChhhh-------------------c--cceEEEe--cCCHHHHHHHHHHHHHHhhcc-CCCEEEEeCcHHHHHH
Confidence 123322111 1 1234332 24555554444333 3344 5999999999987543
Q ss_pred C---CCC--CHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhc----CC-CCCCchhhhhhchhhhhhceeEEEecC
Q psy2891 341 S---RGE--NRATEISEISRNLKGLAKEINCPILALSQLNRSLEQR----QN-KRPIMSDLRESGAIEQDADVILFIYRD 410 (452)
Q Consensus 341 ~---~~~--~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r----~~-~~p~l~dl~~S~~ie~~aD~vl~l~r~ 410 (452)
. ++. .+...+.++++.|+.+|+++||+|+++.|+....... .. .+|. +...+++.+++.++|.+.
T Consensus 234 ~~~~~g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTNqv~~~~~~~~~~~~~~~~P~-----gG~~~~h~~~tRl~L~k~ 308 (342)
T PLN03186 234 EFSGRGELSARQMHLGKFLRSLQRLADEFGVAVVITNQVVAQVDGSAFFAGPQLKPI-----GGNIMAHASTTRLALRKG 308 (342)
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEcCEEEccCCccccCCCccccc-----hhHHHHhhccEEEEEEec
Confidence 1 111 1234478899999999999999999999995432211 11 1443 344689999999999864
Q ss_pred cccccCCCCCCeEEEEEeeccCCCcceEEEEE
Q psy2891 411 EVYNQNSADKGIAEIIVSKQRNGPIGNIRLTF 442 (452)
Q Consensus 411 ~~~~~~~~~~~~~~l~i~KnR~G~~g~~~l~f 442 (452)
. .+.+.+.+.|+|+++.+...|.-
T Consensus 309 ~--------~~~R~~~v~ksp~~p~~e~~F~I 332 (342)
T PLN03186 309 R--------GENRICKVISSPCLPEAEARFSI 332 (342)
T ss_pred C--------CCeEEEEEEECCCCCCeEEEEEE
Confidence 2 23578999999999998855443
No 36
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=99.88 E-value=4.1e-21 Score=177.58 Aligned_cols=204 Identities=19% Similarity=0.252 Sum_probs=139.3
Q ss_pred cccCcccccccc-CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccc
Q psy2891 197 ISTGFFELDKIT-SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLR 275 (452)
Q Consensus 197 i~tg~~~LD~~~-gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~ 275 (452)
+|||++.||.++ ||+++|.++.|+|+||+|||+|++++|.+.+. .|.+|+||+.|....+-..++... .
T Consensus 1 i~TGi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~-~g~~v~yi~~e~~~~~~~~~~~~~----~----- 70 (218)
T cd01394 1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAG-QGKKVAYIDTEGLSSERFRQIAGD----R----- 70 (218)
T ss_pred CCcchhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEECCCCCHHHHHHHHhH----C-----
Confidence 589999999985 79999999999999999999999999999974 689999999997655222222110 0
Q ss_pred cCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHc-CCccEEEEcCcchhccCC-C----CCCHHHH
Q psy2891 276 TGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQC-GKIGVIIIDYLQLMSANS-R----GENRATE 349 (452)
Q Consensus 276 ~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~-~~~~~vvID~l~~i~~~~-~----~~~~~~~ 349 (452)
. +.+ ..++++.+.. +..++...+..+.... .++++||||+++.+.... . ...+...
T Consensus 71 --------~-------~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~lvvIDsi~~l~~~~~~~~~~~~~~~~~ 132 (218)
T cd01394 71 --------P-------ERA-ASSIIVFEPM--DFNEQGRAIQETETFADEKVDLVVVDSATALYRLELGDDDTTIKNYRE 132 (218)
T ss_pred --------h-------Hhh-hcCEEEEeCC--CHHHHHHHHHHHHHHHhcCCcEEEEechHHhhhHHhcCccchHHHHHH
Confidence 0 001 2356665533 3344444333332211 138999999999885321 1 1123446
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccccCCCCCCeEEEEEee
Q psy2891 350 ISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSK 429 (452)
Q Consensus 350 ~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~~~~~~~~l~i~K 429 (452)
+..++..|+.+|+++||+||+++|+++..+ +...+|. ++..+++.||.++.|.+.+. +.....+.|
T Consensus 133 l~~~~~~L~~~a~~~~~~vi~t~q~~~~~~-~~~~~p~-----~g~~~~~~~d~~i~l~~~~~--------~~r~~~~~~ 198 (218)
T cd01394 133 LAKQLTFLLWLARKHDVAVVITNQVYSDVG-SGSVRPL-----GGHTLEHWSKVILRLEKLRV--------GTRRAVLEK 198 (218)
T ss_pred HHHHHHHHHHHHHHhCCEEEEecCCEEcCC-CCccccc-----CCcchhcceeEEEEEEEcCC--------CeEEEEEee
Confidence 778888899999999999999999987543 2233442 34568999999999987641 123344778
Q ss_pred ccCCCcce-EEEEE
Q psy2891 430 QRNGPIGN-IRLTF 442 (452)
Q Consensus 430 nR~G~~g~-~~l~f 442 (452)
+|..+.+. ..+..
T Consensus 199 ~~~~~~~~~~~f~I 212 (218)
T cd01394 199 HRFRPEGSSVYFRI 212 (218)
T ss_pred CCCCCCCceEEEEE
Confidence 88877665 34444
No 37
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=99.87 E-value=7.3e-20 Score=176.34 Aligned_cols=211 Identities=15% Similarity=0.192 Sum_probs=150.3
Q ss_pred CccccccCccccccc-cCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHh-----CCCcEEEEeCCCC--HHHHHHHHHH
Q psy2891 193 DVTGISTGFFELDKI-TSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE-----NKLPVAIFSMEMS--GIQLAMRMLG 264 (452)
Q Consensus 193 ~~~~i~tg~~~LD~~-~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~-----~g~~vl~~s~E~~--~~~i~~R~~a 264 (452)
....++||++.||++ .||+++|.++.|+|+||+|||+|++|++.+++.. .+.+|+|+++|.+ ++++.++..+
T Consensus 74 ~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~ 153 (313)
T TIGR02238 74 KVLKITTGSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAER 153 (313)
T ss_pred cCceeCCCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 445799999999998 6789999999999999999999999999987542 3568999999995 7777766543
Q ss_pred HhCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHH---HHHcCCccEEEEcCcchhccCC
Q psy2891 265 SVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRL---SRQCGKIGVIIIDYLQLMSANS 341 (452)
Q Consensus 265 ~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~---~~~~~~~~~vvID~l~~i~~~~ 341 (452)
.+++...+ + .++++. ...+.++..+.+..+ ..+. ++++||||+++.+....
T Consensus 154 --~g~d~~~~-------------------l--~~i~~~--~~~~~e~~~~~l~~l~~~i~~~-~~~LvVIDSisal~r~~ 207 (313)
T TIGR02238 154 --FGVDPDAV-------------------L--DNILYA--RAYTSEHQMELLDYLAAKFSEE-PFRLLIVDSIMALFRVD 207 (313)
T ss_pred --cCCChHHh-------------------c--CcEEEe--cCCCHHHHHHHHHHHHHHhhcc-CCCEEEEEcchHhhhhh
Confidence 34432211 1 124443 234555555444443 2334 49999999999775432
Q ss_pred ---CC--CCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhh-----cCCCCCCchhhhhhchhhhhhceeEEEecCc
Q psy2891 342 ---RG--ENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQ-----RQNKRPIMSDLRESGAIEQDADVILFIYRDE 411 (452)
Q Consensus 342 ---~~--~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~-----r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~ 411 (452)
++ ..+.+.+.+++..|+.+|+++||+|+++.|+...... ....+|. +...+++.+++.+.|.+.+
T Consensus 208 ~~~~g~~~~r~~~l~~~~~~L~~la~~~~vavvitNqv~~~~~~~~~~~~~~~~p~-----gG~~~~h~~~~Rl~l~k~~ 282 (313)
T TIGR02238 208 FSGRGELSERQQKLAQMLSRLNKISEEFNVAVFVTNQVQADPGATMTFIADPKKPI-----GGHVLAHASTTRILLRKGR 282 (313)
T ss_pred ccCccchHHHHHHHHHHHHHHHHHHHHcCcEEEEECceEecCCcccccCCCCccCc-----chhhhhhheeEEEEEEecC
Confidence 11 1233457889999999999999999999999875432 1123343 2446899999999998742
Q ss_pred ccccCCCCCCeEEEEEeeccCCCcceEEEEE
Q psy2891 412 VYNQNSADKGIAEIIVSKQRNGPIGNIRLTF 442 (452)
Q Consensus 412 ~~~~~~~~~~~~~l~i~KnR~G~~g~~~l~f 442 (452)
.+.+.+.+.|+++-+.+.+.|..
T Consensus 283 --------~~~R~~~~~~sp~~p~~~~~f~i 305 (313)
T TIGR02238 283 --------GEERVAKLYDSPDMPEAEASFQI 305 (313)
T ss_pred --------CCeEEEEEeeCCCCCCeEEEEEE
Confidence 13478999999998888766553
No 38
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=99.87 E-value=1.8e-20 Score=174.00 Aligned_cols=198 Identities=21% Similarity=0.238 Sum_probs=135.5
Q ss_pred Cccccccc-cCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCC
Q psy2891 200 GFFELDKI-TSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGR 278 (452)
Q Consensus 200 g~~~LD~~-~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~ 278 (452)
|++.||++ .||+++|++++|+|+||+|||+|+++++.+.+. +|.+|+||++|++++++.+++.+. |++....
T Consensus 1 Gi~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~-~g~~~~y~s~e~~~~~l~~~~~~~--~~~~~~~---- 73 (224)
T TIGR03880 1 GIPGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLK-NGEKAMYISLEEREERILGYAKSK--GWDLEDY---- 73 (224)
T ss_pred CchhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEECCCCHHHHHHHHHHc--CCChHHH----
Confidence 68899997 589999999999999999999999999999875 699999999999999999998652 3332111
Q ss_pred CCcchHHHHHHHHHHHhCCCeEEEcCCC----CCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHH
Q psy2891 279 LSSDDWPRINDSIKKINKSQLYIDETPS----LNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEIS 354 (452)
Q Consensus 279 l~~~~~~~~~~a~~~l~~~~l~i~~~~~----~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~ 354 (452)
+.+ ++++.+... ..++++...++.+..+++ +++||||+++.+.... .+.......+.
T Consensus 74 ---------------~~~-~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~~-~~~vVIDsls~l~~~~--~~~~~~r~~l~ 134 (224)
T TIGR03880 74 ---------------IDK-SLYIVRLDPSDFKTSLNRIKNELPILIKELG-ASRVVIDPISLLETLF--DDDAERRTELF 134 (224)
T ss_pred ---------------HhC-CeEEEecCHHHHHhhHHHHHHHHHHHHHHhC-CCEEEEcChHHHhhhc--CCHHHHHHHHH
Confidence 112 455544221 235677777777777776 9999999999885422 11111112223
Q ss_pred HHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccccCCCCCCeEEEEEeeccCCC
Q psy2891 355 RNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQRNGP 434 (452)
Q Consensus 355 ~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~~~~~~~~l~i~KnR~G~ 434 (452)
.-++. .++.|+++++++|.+... |..+. .+.+++.||.|+.|...+..+ .......|.|.|+|.+.
T Consensus 135 ~l~~~-lk~~~~tvll~s~~~~~~-------~~~~~---~~~~~~l~D~vI~L~~~~~~~---~~~~~r~l~v~K~Rg~~ 200 (224)
T TIGR03880 135 RFYSS-LRETGVTTILTSEADKTN-------VFASK---YGLIEYLADGVIILKYVRNSD---LRDVRLAVEVVKMRRSK 200 (224)
T ss_pred HHHHH-HHhCCCEEEEEEcccCCC-------CCccC---CCceEEEEeEEEEEeeeeccc---CcceEEEEEEEEccCCC
Confidence 23333 357899999999987521 11111 345799999999995432110 01123468899999875
Q ss_pred cce
Q psy2891 435 IGN 437 (452)
Q Consensus 435 ~g~ 437 (452)
...
T Consensus 201 ~~~ 203 (224)
T TIGR03880 201 HSR 203 (224)
T ss_pred CCC
Confidence 433
No 39
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=99.86 E-value=3.8e-20 Score=177.29 Aligned_cols=219 Identities=21% Similarity=0.236 Sum_probs=154.5
Q ss_pred CccccccCccccccc-c-CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCC
Q psy2891 193 DVTGISTGFFELDKI-T-SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLD 270 (452)
Q Consensus 193 ~~~~i~tg~~~LD~~-~-gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~ 270 (452)
....+|||++.||.+ . ||+++|.++.|+|+||+|||+||++++.+++. .|.+|+||++|.+...- + +...|++
T Consensus 32 ~~~~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~-~g~~~vyId~E~~~~~~--~--a~~lGvd 106 (325)
T cd00983 32 DVEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQK-LGGTVAFIDAEHALDPV--Y--AKKLGVD 106 (325)
T ss_pred CCceecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCCEEEECccccHHHH--H--HHHcCCC
Confidence 456899999999998 4 69999999999999999999999999999875 68999999999987752 2 2223444
Q ss_pred ccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCC--CC---CC
Q psy2891 271 QHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANS--RG---EN 345 (452)
Q Consensus 271 ~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~--~~---~~ 345 (452)
.++ +++.. ..+.++....+..+.+... +++||||++..+.+.. .+ +.
T Consensus 107 ~~~-------------------------l~v~~--p~~~eq~l~i~~~li~s~~-~~lIVIDSvaal~~~~E~~~~~~~~ 158 (325)
T cd00983 107 LDN-------------------------LLISQ--PDTGEQALEIADSLVRSGA-VDLIVVDSVAALVPKAEIEGEMGDS 158 (325)
T ss_pred HHH-------------------------heecC--CCCHHHHHHHHHHHHhccC-CCEEEEcchHhhccccccccccccc
Confidence 321 23332 2356778888887777664 9999999999887521 11 11
Q ss_pred ----HHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccccCCCC-C
Q psy2891 346 ----RATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSAD-K 420 (452)
Q Consensus 346 ----~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~~~-~ 420 (452)
....+...++.|..+++++||++|++.|+.-......+ .| .---|...+++.+.+.+.+.+.+......+. -
T Consensus 159 ~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQvr~~ig~~~g-~~--e~~~GG~~L~~~ss~rl~lrk~~~~k~~~~~~G 235 (325)
T cd00983 159 HVGLQARLMSQALRKLTGSINKSNTTVIFINQLREKIGVMFG-NP--ETTTGGNALKFYSSVRLDIRRIETIKDGDEVIG 235 (325)
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCCEEEEEEccccccccccC-CC--ccCCCchHHhhhcceEEEEEeecccccCCcccc
Confidence 12235677888889999999999999998764432111 11 1123455689999999999876533221111 2
Q ss_pred CeEEEEEeeccCCCcce---EEEEEEcCcc
Q psy2891 421 GIAEIIVSKQRNGPIGN---IRLTFSGQYT 447 (452)
Q Consensus 421 ~~~~l~i~KnR~G~~g~---~~l~f~~~~~ 447 (452)
+.+.+.+.|||.-+++. +.+.|...-.
T Consensus 236 ~~~~~~v~Knk~~~p~~~~~~~i~~~~Gi~ 265 (325)
T cd00983 236 NRTKVKVVKNKVAPPFKTAEFDILFGEGIS 265 (325)
T ss_pred cEEEEEEEecccCCCCCceEEEEEcCcccc
Confidence 34799999999987664 4555654433
No 40
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=99.86 E-value=7.9e-20 Score=177.16 Aligned_cols=210 Identities=15% Similarity=0.163 Sum_probs=150.1
Q ss_pred ccccccCccccccc-cCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHh-----CCCcEEEEeCCC--CHHHHHHHHHHH
Q psy2891 194 VTGISTGFFELDKI-TSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE-----NKLPVAIFSMEM--SGIQLAMRMLGS 265 (452)
Q Consensus 194 ~~~i~tg~~~LD~~-~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~-----~g~~vl~~s~E~--~~~~i~~R~~a~ 265 (452)
...++||++.||++ .||+++|.++.|+|+||+|||+|++|++.+.+.. .+.+|+|+++|. +++++.++..+
T Consensus 105 ~~~isTG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~- 183 (344)
T PLN03187 105 VVRITTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAER- 183 (344)
T ss_pred CceecCCcHhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHH-
Confidence 45799999999998 6799999999999999999999999999988641 136899999999 58877776543
Q ss_pred hCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHH---HHHHcCCccEEEEcCcchhccCC-
Q psy2891 266 VGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRR---LSRQCGKIGVIIIDYLQLMSANS- 341 (452)
Q Consensus 266 ~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~---~~~~~~~~~~vvID~l~~i~~~~- 341 (452)
.|++...+ + .++++.. ..+++++...+.. ...+++ +++||||+++.+....
T Consensus 184 -~g~d~~~~-------------------l--~~I~~~~--~~~~e~~~~~l~~l~~~i~~~~-~~LvVIDSital~r~~~ 238 (344)
T PLN03187 184 -FGMDADAV-------------------L--DNIIYAR--AYTYEHQYNLLLGLAAKMAEEP-FRLLIVDSVIALFRVDF 238 (344)
T ss_pred -cCCChhhh-------------------c--CeEEEec--CCCHHHHHHHHHHHHHHHHhcC-CCEEEEeCcHHhhhccc
Confidence 34432211 1 1344432 3466665544443 334454 9999999999765432
Q ss_pred --CC--CCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhc----CCCCCCchhhhhhchhhhhhceeEEEecCccc
Q psy2891 342 --RG--ENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQR----QNKRPIMSDLRESGAIEQDADVILFIYRDEVY 413 (452)
Q Consensus 342 --~~--~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r----~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~ 413 (452)
++ ..+.+.+.++++.|+.+|+++||+|++++|+....... ...+|. +...+++.+++.++|.+..
T Consensus 239 ~~rg~l~~rq~~L~~~~~~L~~lA~~~~vavvvTNqv~~~~~~~~~~~~~~~pa-----gG~~~~h~~~~Rl~l~k~~-- 311 (344)
T PLN03187 239 TGRGELAERQQKLAQMLSRLTKIAEEFNVAVYMTNQVIADPGGGMFISDPKKPA-----GGHVLAHAATIRLMLRKGK-- 311 (344)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEecEEEcCCcccccCCCCCCC-----CchhhheeeeEEEEEEcCC--
Confidence 11 13444578899999999999999999999997643211 112332 3446888899999997642
Q ss_pred ccCCCCCCeEEEEEeeccCCCcceEEEEE
Q psy2891 414 NQNSADKGIAEIIVSKQRNGPIGNIRLTF 442 (452)
Q Consensus 414 ~~~~~~~~~~~l~i~KnR~G~~g~~~l~f 442 (452)
...+.+.+.|+|+.+.+...|..
T Consensus 312 ------~~~R~~~v~ksp~lp~~~~~f~I 334 (344)
T PLN03187 312 ------GEQRVCKVFDAPNLPEAEAEFQI 334 (344)
T ss_pred ------CCeEEEEEEECCCCCCceEEEEE
Confidence 12478999999999988876543
No 41
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.86 E-value=2.6e-20 Score=193.16 Aligned_cols=202 Identities=18% Similarity=0.204 Sum_probs=148.1
Q ss_pred CccccccCcccccccc-CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCc
Q psy2891 193 DVTGISTGFFELDKIT-SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQ 271 (452)
Q Consensus 193 ~~~~i~tg~~~LD~~~-gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~ 271 (452)
...++|||++.||+++ ||+++|++++|+|+||+|||+|++|++.+.+.+.|.+|+|||+|++++++.+++.+ .|++.
T Consensus 9 ~~~ri~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~--~g~d~ 86 (509)
T PRK09302 9 GIEKLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVAS--FGWDL 86 (509)
T ss_pred CCccccCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHH--cCCCH
Confidence 5568999999999995 79999999999999999999999999999886448999999999999999999986 46665
Q ss_pred cccccCCCCcchHHHHHHHHHHHhCCCeEEEc----------CCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCC
Q psy2891 272 HKLRTGRLSSDDWPRINDSIKKINKSQLYIDE----------TPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANS 341 (452)
Q Consensus 272 ~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~----------~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~ 341 (452)
..+.. +..+++.+ .....++.+...+.....+++ ++.||||+++.+....
T Consensus 87 ~~~~~-------------------~g~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~-~~~vVIDSls~l~~~~ 146 (509)
T PRK09302 87 QKLID-------------------EGKLFILDASPDPSEQEEAGEYDLEALFIRIEYAIDKIG-AKRVVLDSIEALFSGF 146 (509)
T ss_pred HHHhh-------------------CCeEEEEecCcccccccccccccHHHHHHHHHHHHHhhC-CCEEEECCHHHHHhhc
Confidence 54321 11222211 223456777888888877775 9999999999865432
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccccCCCCCC
Q psy2891 342 RGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKG 421 (452)
Q Consensus 342 ~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~~~~~ 421 (452)
+....+...+..|...+++.++++++++|..... .++...+..++.||.|+.|...... ...
T Consensus 147 ---d~~~~~r~~l~~L~~~Lk~~g~TvLlt~~~~~~~----------~~~~~~~~~~~laDgVI~L~~~~~~-----~~~ 208 (509)
T PRK09302 147 ---SNEAVVRRELRRLFAWLKQKGVTAVITGERGDEY----------GPLTRYGVEEFVSDCVIILRNRLEG-----EKR 208 (509)
T ss_pred ---cCHHHHHHHHHHHHHHHHhCCCEEEEEECCccCc----------CCccccCceEEEeeEEEEEeEEccC-----CeE
Confidence 1222344556667777788999999999875421 1122233457799999999754321 223
Q ss_pred eEEEEEeeccCCC
Q psy2891 422 IAEIIVSKQRNGP 434 (452)
Q Consensus 422 ~~~l~i~KnR~G~ 434 (452)
.+.|.|.|.|...
T Consensus 209 ~R~l~I~K~Rg~~ 221 (509)
T PRK09302 209 TRTLRILKYRGTT 221 (509)
T ss_pred EEEEEEEECCCCC
Confidence 5789999999654
No 42
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=99.85 E-value=3.9e-20 Score=177.19 Aligned_cols=217 Identities=21% Similarity=0.226 Sum_probs=152.8
Q ss_pred CccccccCcccccccc--CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCC
Q psy2891 193 DVTGISTGFFELDKIT--SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLD 270 (452)
Q Consensus 193 ~~~~i~tg~~~LD~~~--gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~ 270 (452)
....+|||++.||.++ |||++|.++.|+|+||+|||+||++++.+++. .|.+|+||++|.+..... +...|++
T Consensus 32 ~~~~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~-~g~~v~yId~E~~~~~~~----a~~lGvd 106 (321)
T TIGR02012 32 DVETISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQK-AGGTAAFIDAEHALDPVY----ARKLGVD 106 (321)
T ss_pred cCceecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEEcccchhHHHH----HHHcCCC
Confidence 4568999999999984 79999999999999999999999999999975 689999999999887642 2334554
Q ss_pred ccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCC--C---CCC
Q psy2891 271 QHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANS--R---GEN 345 (452)
Q Consensus 271 ~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~--~---~~~ 345 (452)
.. ++++.+. .+.++....+..+.+..+ +++||||+++.+.+.. . +++
T Consensus 107 ~~-------------------------~l~v~~p--~~~eq~l~~~~~li~~~~-~~lIVIDSv~al~~~~E~e~~~g~~ 158 (321)
T TIGR02012 107 ID-------------------------NLLVSQP--DTGEQALEIAETLVRSGA-VDIIVVDSVAALVPKAEIEGEMGDS 158 (321)
T ss_pred HH-------------------------HeEEecC--CCHHHHHHHHHHHhhccC-CcEEEEcchhhhccchhhccccccc
Confidence 32 2333322 356777777777776664 9999999999887531 1 111
Q ss_pred ----HHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccccC-CCCC
Q psy2891 346 ----RATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQN-SADK 420 (452)
Q Consensus 346 ----~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~-~~~~ 420 (452)
....+...++.|..+++++||++|++.|+.-...... ..| ..--|...+.+.+...+.+.|-...... +..-
T Consensus 159 ~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQvr~~~g~~~-~~~--e~~~GG~aL~~~ss~r~~lrr~~~iK~~~~~~g 235 (321)
T TIGR02012 159 HVGLQARLMSQALRKLTGALSKSNTTAIFINQIREKIGVMF-GNP--ETTTGGRALKFYASVRLDIRRIGQVKQGEEVVG 235 (321)
T ss_pred chhHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeccCccc-CCC--ccCcCccHHHHHHhHhHhhhhhhccccCCceec
Confidence 1223457788899999999999999999875432111 111 1122344578899998888775432211 1122
Q ss_pred CeEEEEEeeccCCCcce---EEEEEEcC
Q psy2891 421 GIAEIIVSKQRNGPIGN---IRLTFSGQ 445 (452)
Q Consensus 421 ~~~~l~i~KnR~G~~g~---~~l~f~~~ 445 (452)
+.+.+.+.|||..+++. +.+.|...
T Consensus 236 ~~~~~~v~Knk~~~p~~~~~~~i~~~~G 263 (321)
T TIGR02012 236 NRTKVKVVKNKVAPPFKEAEFDILYGEG 263 (321)
T ss_pred cEEEEEEEECCCCCCCCceEEEEEcCCc
Confidence 45899999999987664 45556543
No 43
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.85 E-value=4.6e-20 Score=189.30 Aligned_cols=203 Identities=19% Similarity=0.176 Sum_probs=151.6
Q ss_pred ccccccCccccccc-cCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCcc
Q psy2891 194 VTGISTGFFELDKI-TSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQH 272 (452)
Q Consensus 194 ~~~i~tg~~~LD~~-~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~ 272 (452)
...++||+++||++ .||+++|.+++|.|+||+|||+|++|++.+.|. +|.+|+|||+|++++++..|+.+ .|++..
T Consensus 242 ~~~~~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~-~ge~~~y~s~eEs~~~i~~~~~~--lg~~~~ 318 (484)
T TIGR02655 242 NVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACA-NKERAILFAYEESRAQLLRNAYS--WGIDFE 318 (484)
T ss_pred ccccCCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEEeeCCHHHHHHHHHH--cCCChH
Confidence 44799999999998 688999999999999999999999999999985 79999999999999999999864 455543
Q ss_pred ccccCCCCcchHHHHHHHHHHHhCCCeEEEc--CCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHH
Q psy2891 273 KLRTGRLSSDDWPRINDSIKKINKSQLYIDE--TPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEI 350 (452)
Q Consensus 273 ~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~--~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~ 350 (452)
.+. ....+.+.+ ....++++....+.....+++ +++||||+++.+.... .. .++
T Consensus 319 ~~~-------------------~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~-~~~vvIDsi~~~~~~~---~~-~~~ 374 (484)
T TIGR02655 319 EME-------------------QQGLLKIICAYPESAGLEDHLQIIKSEIADFK-PARIAIDSLSALARGV---SN-NAF 374 (484)
T ss_pred HHh-------------------hCCcEEEEEcccccCChHHHHHHHHHHHHHcC-CCEEEEcCHHHHHHhc---CH-HHH
Confidence 221 122344443 334567788888877777775 9999999999886532 11 334
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccccCCCCCCeEEEEEeec
Q psy2891 351 SEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQ 430 (452)
Q Consensus 351 ~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~~~~~~~~l~i~Kn 430 (452)
..++..|..++|+.|++++++.+...-.... ..+ ...+++.||.|++|...+.. ..-...+.|.|.
T Consensus 375 r~~~~~l~~~lk~~~it~~~t~~~~~~~~~~--~~~-------~~~~s~l~D~ii~l~~~e~~-----g~~~r~i~V~K~ 440 (484)
T TIGR02655 375 RQFVIGVTGYAKQEEITGFFTNTSDQFMGSH--SIT-------DSHISTITDTILMLQYVEIR-----GEMSRAINVFKM 440 (484)
T ss_pred HHHHHHHHHHHhhCCCeEEEeecccccccCC--ccC-------CCCeeEeeeEEEEEEEEecC-----CEEEEEEEEEEc
Confidence 6677788899999999999998765422100 001 23578899999999765432 112356889999
Q ss_pred cCCCcce
Q psy2891 431 RNGPIGN 437 (452)
Q Consensus 431 R~G~~g~ 437 (452)
|.+....
T Consensus 441 R~~~~~~ 447 (484)
T TIGR02655 441 RGSWHDK 447 (484)
T ss_pred cCCCCCC
Confidence 9886443
No 44
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=99.85 E-value=6.1e-21 Score=172.99 Aligned_cols=171 Identities=25% Similarity=0.333 Sum_probs=99.8
Q ss_pred ccccccCccccccccCC-CCCCcEEEEEeCCCCChhHHHHHHHHHHHHh---------CCCcEEEEeCCCCHHHHHHHHH
Q psy2891 194 VTGISTGFFELDKITSG-LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE---------NKLPVAIFSMEMSGIQLAMRML 263 (452)
Q Consensus 194 ~~~i~tg~~~LD~~~gG-~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~---------~g~~vl~~s~E~~~~~i~~R~~ 263 (452)
..+++++++.+|.+++| +.+|++++|+|+||+|||+|+++++.+++.+ .+.+|+|+++|++..++..|+.
T Consensus 11 ~~~~~~~~~~~~~li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~ 90 (193)
T PF13481_consen 11 FEDLDTGFPPLDWLIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLR 90 (193)
T ss_dssp --HHHS------EEETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHH
T ss_pred hhhccCCCCCcceeECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHH
Confidence 34688999999999655 5689999999999999999999999999852 4679999999999999999998
Q ss_pred HHhCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHH-cCCccEEEEcCcchhccCCC
Q psy2891 264 GSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQ-CGKIGVIIIDYLQLMSANSR 342 (452)
Q Consensus 264 a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~-~~~~~~vvID~l~~i~~~~~ 342 (452)
+...+. ...+...+....+ ....+++..+......+.....+.+...+ ++ +++||||+++.+....
T Consensus 91 ~~~~~~----------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~lvviD~l~~~~~~~- 157 (193)
T PF13481_consen 91 ALLQDY----------DDDANLFFVDLSN-WGCIRLFEPDSGGPLLDEDLEELEAALKELYG-PDLVVIDPLQSLHDGD- 157 (193)
T ss_dssp HHHTTS-----------HHHHHHHHHH---E-EE---TTS---TTSHHHHHHHHHHHTT-----SEEEEE-GGGG--S--
T ss_pred HHhccc----------CCccceEEeeccc-cccceeeecccccccchHHHHHHHHHHhhcCC-CcEEEEcCHHHHhcCC-
Confidence 754322 1111111111111 11112222222222234445555555555 55 9999999999998763
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcch
Q psy2891 343 GENRATEISEISRNLKGLAKEINCPILALSQLNRSL 378 (452)
Q Consensus 343 ~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~ 378 (452)
.+....+..+++.|+.+|+++|++|++++|.+|+.
T Consensus 158 -~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~K~~ 192 (193)
T PF13481_consen 158 -ENSNSAVAQLMQELKRLAKEYGVAVILVHHTNKSG 192 (193)
T ss_dssp -TT-HHHHHHHHHHHHHHHHHH--EEEEEEEE----
T ss_pred -CCCHHHHHHHHHHHHHHHHHcCCEEEEEECCCCCC
Confidence 55555668999999999999999999999999853
No 45
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=99.84 E-value=6.2e-20 Score=171.69 Aligned_cols=207 Identities=16% Similarity=0.251 Sum_probs=140.2
Q ss_pred cccCccccccc-cCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhC-----CCcEEEEeCCCC--HHHHHHHHHHHhCC
Q psy2891 197 ISTGFFELDKI-TSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIEN-----KLPVAIFSMEMS--GIQLAMRMLGSVGK 268 (452)
Q Consensus 197 i~tg~~~LD~~-~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~-----g~~vl~~s~E~~--~~~i~~R~~a~~~~ 268 (452)
+|||++.||++ .||+++|+++.|.|+||+|||+|+++++.+.+... +.+|+||++|.+ .+.+.+.+.+ .+
T Consensus 1 ~~tG~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~--~~ 78 (235)
T cd01123 1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAER--FG 78 (235)
T ss_pred CCCCchhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHH--hc
Confidence 58999999998 57999999999999999999999999998865432 478999999985 3333222211 11
Q ss_pred CCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHH---HHHHHHHHHcCCccEEEEcCcchhccC---CC
Q psy2891 269 LDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELR---ANSRRLSRQCGKIGVIIIDYLQLMSAN---SR 342 (452)
Q Consensus 269 i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~---~~i~~~~~~~~~~~~vvID~l~~i~~~---~~ 342 (452)
.+ .+ . + ..++++... .+.+++. ..+.....+++++++||||+++.+... ..
T Consensus 79 ~~----------~~---~-------~-~~~i~~~~~--~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~ 135 (235)
T cd01123 79 LD----------PE---E-------V-LDNIYVARA--YNSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGR 135 (235)
T ss_pred cC----------hH---h-------H-hcCEEEEec--CCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCC
Confidence 11 00 0 1 024555432 2334433 444444455524999999999976432 11
Q ss_pred --CCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhc-----CCCCCCchhhhhhchhhhhhceeEEEecCccccc
Q psy2891 343 --GENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQR-----QNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQ 415 (452)
Q Consensus 343 --~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r-----~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~ 415 (452)
..++.+.+..+++.|+.+|++++|+|++++|+....... ....|. +...+.+.++..+++.+..
T Consensus 136 ~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~~~~~~~~~~~~~~~~~~p~-----lG~~w~~~v~~Rl~l~~~~---- 206 (235)
T cd01123 136 GELAERQQHLAKLLRTLKRLADEFNVAVVITNQVTARPDGAAMFGGDPKKPA-----GGNIWAHASTTRLYLRKGR---- 206 (235)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccEeecCCcccccCCCCeecc-----CccHhhCCceEEEEEEECC----
Confidence 124556788999999999999999999999998644321 111232 2346778888889998753
Q ss_pred CCCCCCeEEEEEeeccCCCcceEEEE
Q psy2891 416 NSADKGIAEIIVSKQRNGPIGNIRLT 441 (452)
Q Consensus 416 ~~~~~~~~~l~i~KnR~G~~g~~~l~ 441 (452)
...+.+.+.|++..+.+...|.
T Consensus 207 ----~~~r~~~i~k~~~~~~~~~~f~ 228 (235)
T cd01123 207 ----GEERIAKIVDSPHLPEGEAVFA 228 (235)
T ss_pred ----CCceEEEEeeCCCCCCceEEEE
Confidence 1346899999998885555443
No 46
>PRK09354 recA recombinase A; Provisional
Probab=99.84 E-value=3.8e-19 Score=171.58 Aligned_cols=219 Identities=20% Similarity=0.236 Sum_probs=153.9
Q ss_pred CccccccCccccccc-c-CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCC
Q psy2891 193 DVTGISTGFFELDKI-T-SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLD 270 (452)
Q Consensus 193 ~~~~i~tg~~~LD~~-~-gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~ 270 (452)
....+|||++.||.+ . |||++|.++.|+|+||+|||+||++++.+++. .|.+|+||++|.+...- . +...|++
T Consensus 37 ~~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~-~G~~~~yId~E~s~~~~---~-a~~lGvd 111 (349)
T PRK09354 37 DVEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK-AGGTAAFIDAEHALDPV---Y-AKKLGVD 111 (349)
T ss_pred CCceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEECCccchHHH---H-HHHcCCC
Confidence 355899999999998 4 69999999999999999999999999999974 68999999999988852 2 2234555
Q ss_pred ccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCC----C-CCC
Q psy2891 271 QHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANS----R-GEN 345 (452)
Q Consensus 271 ~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~----~-~~~ 345 (452)
.++ +++.. + .+.++....+..+.+..+ +++||||++..+.+.. . ++.
T Consensus 112 ld~-------------------------lli~q-p-~~~Eq~l~i~~~li~s~~-~~lIVIDSvaaL~~~~E~eg~~gd~ 163 (349)
T PRK09354 112 IDN-------------------------LLVSQ-P-DTGEQALEIADTLVRSGA-VDLIVVDSVAALVPKAEIEGEMGDS 163 (349)
T ss_pred HHH-------------------------eEEec-C-CCHHHHHHHHHHHhhcCC-CCEEEEeChhhhcchhhhcCCcccc
Confidence 332 23332 2 357777788887777764 9999999999887521 0 111
Q ss_pred ----HHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCccccc-CCCCC
Q psy2891 346 ----RATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQ-NSADK 420 (452)
Q Consensus 346 ----~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~-~~~~~ 420 (452)
....+...++.|..+++++||++|++.|+.-....- ...|. .--|..++.+.+.+.+.+.|...... ++..-
T Consensus 164 ~~~~qar~ms~~Lr~L~~~l~k~~itvI~tNQvr~~ig~~-~g~pe--~~~GG~aL~~~ss~rl~lrr~~~iK~~~~~~G 240 (349)
T PRK09354 164 HVGLQARLMSQALRKLTGNISKSNTTVIFINQIREKIGVM-FGNPE--TTTGGNALKFYASVRLDIRRIGTIKDGDEVIG 240 (349)
T ss_pred chhHHHHHHHHHHHHHHHHHHHcCcEEEEEEeeeeccccc-cCCCC--cCCCchhhHhhheeeeEEecccccccCCceec
Confidence 122345667888899999999999999987643211 01121 11234568899999999988653221 11112
Q ss_pred CeEEEEEeeccCCCcce---EEEEEEcCcc
Q psy2891 421 GIAEIIVSKQRNGPIGN---IRLTFSGQYT 447 (452)
Q Consensus 421 ~~~~l~i~KnR~G~~g~---~~l~f~~~~~ 447 (452)
+.+.+.+.|||..+++. +.+.|..--.
T Consensus 241 ~~~r~~vvKnk~~~p~~~a~~~i~~~~Gi~ 270 (349)
T PRK09354 241 NRTKVKVVKNKVAPPFKQAEFDIMYGEGIS 270 (349)
T ss_pred ceEEEEEEecccCCCCCceEEEEEcCCccc
Confidence 45799999999887654 4555654433
No 47
>PF00772 DnaB: DnaB-like helicase N terminal domain; InterPro: IPR007693 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This N-terminal domain is required both for interaction with other proteins in the primosome and for DnaB helicase activity. This domain has a multi-helical structure that forms an orthogonal bundle [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1B79_D 1JWE_A 3GXV_C 3BGW_C 2R6D_B 2R6C_D 2R6E_B 2R6A_A 2VYE_A 2VYF_B ....
Probab=99.83 E-value=1.1e-20 Score=153.19 Aligned_cols=102 Identities=43% Similarity=0.713 Sum_probs=95.1
Q ss_pred CCCCHHHHHHHHHHHhcCcccHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCCcccccCHHHH
Q psy2891 15 PPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITVFDSLSNTGNAEEIGGLSYL 94 (452)
Q Consensus 15 ~~~~~~aE~~vLg~ll~~~~~~~~i~~~L~p~~F~~~~h~~If~~i~~l~~~~~~id~~tv~~~l~~~~~~~~~gg~~~l 94 (452)
+|+++++|++|||++|.+|+.+.++...|+|+||++|.||.||++|.+++++|.++|+.+|..++++.+....+||.+||
T Consensus 2 ~p~~~~aE~~lL~~lL~~~~~~~~i~~~L~~e~F~~~~h~~If~~i~~l~~~~~~id~~~v~~~l~~~~~~~~~~~~~~l 81 (103)
T PF00772_consen 2 LPYDIEAEKALLGALLNDPEAIDEIIDKLSPEDFYDPAHRRIFEAILELYREGEPIDPITVAEELSDEGKLKDIGGIEYL 81 (103)
T ss_dssp SSHHHHHHHHHHHHHHHSCCHHHHHHTT-SGGGSSSHHHHHHHHHHHHHHHTTS--SHHHHHHHHHHTTTCCHHTHHHHH
T ss_pred CCCcHHHHHHHHHHHHcChHHHHHHhccCCHHHhCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCccccCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999998888888999999
Q ss_pred HHHHhcCCChHhHHHHHHHHHH
Q psy2891 95 NSLAQNIPSAANIRRYAEIVRD 116 (452)
Q Consensus 95 ~~l~~~~~~~~n~~~y~~~l~~ 116 (452)
.++...+++..|+++|++.|++
T Consensus 82 ~~l~~~~~~~~~~~~y~~~i~e 103 (103)
T PF00772_consen 82 MELINNAPSIANLEDYAKIIKE 103 (103)
T ss_dssp HHHHHHSSSSSTHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHhhC
Confidence 9999999998999999999986
No 48
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=99.83 E-value=5.3e-19 Score=172.30 Aligned_cols=212 Identities=16% Similarity=0.215 Sum_probs=145.3
Q ss_pred CccccccCccccccc-cCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHh-----CCCcEEEEeCCC--CHHHHHHHHHH
Q psy2891 193 DVTGISTGFFELDKI-TSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE-----NKLPVAIFSMEM--SGIQLAMRMLG 264 (452)
Q Consensus 193 ~~~~i~tg~~~LD~~-~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~-----~g~~vl~~s~E~--~~~~i~~R~~a 264 (452)
....++||.+.||++ .||+++|.++.|+|+||+|||+|++|++.+++.. .+.+|+||++|. +++++.+.+.+
T Consensus 80 s~~~~~Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~ 159 (317)
T PRK04301 80 NVGKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEA 159 (317)
T ss_pred cCCccCCCCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHH
Confidence 345689999999998 5789999999999999999999999999988642 135899999999 46666665532
Q ss_pred HhCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCC-CHHHHHHHHHHHHHH-cCCccEEEEcCcchhccCC-
Q psy2891 265 SVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSL-NVIELRANSRRLSRQ-CGKIGVIIIDYLQLMSANS- 341 (452)
Q Consensus 265 ~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~-t~~~i~~~i~~~~~~-~~~~~~vvID~l~~i~~~~- 341 (452)
.|++.+. + +. ++++...... ....+...+..+..+ . ++++||||+++.+....
T Consensus 160 --~g~~~~~-------------~------l~--~i~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~lvVIDSisa~~~~~~ 215 (317)
T PRK04301 160 --LGLDPDE-------------V------LD--NIHVARAYNSDHQMLLAEKAEELIKEGE-NIKLVIVDSLTAHFRAEY 215 (317)
T ss_pred --cCCChHh-------------h------hc--cEEEEeCCCHHHHHHHHHHHHHHHhccC-ceeEEEEECchHHhhhhc
Confidence 2322211 0 11 3444432211 112334444455444 4 49999999999875431
Q ss_pred CCC----CHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhc--CCCCCCchhhhhhchhhhhhceeEEEecCccccc
Q psy2891 342 RGE----NRATEISEISRNLKGLAKEINCPILALSQLNRSLEQR--QNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQ 415 (452)
Q Consensus 342 ~~~----~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r--~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~ 415 (452)
... .+.+.+..++..|+.+|+++||+||++.|+....... ....|.. .-.+.+.+++.+.|.+..
T Consensus 216 ~~~~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnqv~~~~~~~~~~~~~~~~-----G~~~~~~~~~rl~l~k~~---- 286 (317)
T PRK04301 216 VGRGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQVMARPDAFFGDPTQPIG-----GHILGHTATFRIYLRKSK---- 286 (317)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeceEEeccccccCccccCCc-----chHhHhheeEEEEEEecC----
Confidence 111 1234467888999999999999999999987643211 1123332 335788999999998642
Q ss_pred CCCCCCeEEEEEeeccCCCcceEEEE
Q psy2891 416 NSADKGIAEIIVSKQRNGPIGNIRLT 441 (452)
Q Consensus 416 ~~~~~~~~~l~i~KnR~G~~g~~~l~ 441 (452)
.+.+.+.+.|+++++.|.+.|.
T Consensus 287 ----~~~R~~~v~k~~~~~~~~~~f~ 308 (317)
T PRK04301 287 ----GNKRIARLVDSPHLPEGEAVFR 308 (317)
T ss_pred ----CCceEEEEEeCCCCCCceEEEE
Confidence 1357899999999999887544
No 49
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=99.83 E-value=7.6e-19 Score=170.99 Aligned_cols=210 Identities=16% Similarity=0.228 Sum_probs=143.9
Q ss_pred CccccccCccccccc-cCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHh-----CCCcEEEEeCCC--CHHHHHHHHHH
Q psy2891 193 DVTGISTGFFELDKI-TSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE-----NKLPVAIFSMEM--SGIQLAMRMLG 264 (452)
Q Consensus 193 ~~~~i~tg~~~LD~~-~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~-----~g~~vl~~s~E~--~~~~i~~R~~a 264 (452)
....++||.+.||.+ .||+++|.++.|+|+||+|||+|++|++.+++.. .+.+|+|+++|. +++++.+.+.+
T Consensus 73 s~~~~~Tg~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~ 152 (310)
T TIGR02236 73 TIGKITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEA 152 (310)
T ss_pred cCCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHH
Confidence 344688999999998 6799999999999999999999999999998631 134899999999 56655544332
Q ss_pred HhCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHH---HHHHHHHHHHHcC-CccEEEEcCcchhccC
Q psy2891 265 SVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIE---LRANSRRLSRQCG-KIGVIIIDYLQLMSAN 340 (452)
Q Consensus 265 ~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~---i~~~i~~~~~~~~-~~~~vvID~l~~i~~~ 340 (452)
.|++.. ++ + .++++... .+.+. +...+..+..+++ ++++||||+++.+...
T Consensus 153 --~gl~~~----------~~---------~--~~i~i~~~--~~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~ 207 (310)
T TIGR02236 153 --RGLDPD----------EV---------L--KNIYVARA--YNSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRA 207 (310)
T ss_pred --cCCCHH----------HH---------h--hceEEEec--CCHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhhH
Confidence 232211 10 1 13555432 12111 2233334444442 3889999999987543
Q ss_pred C-CCC----CHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhh--cCCCCCCchhhhhhchhhhhhceeEEEecCccc
Q psy2891 341 S-RGE----NRATEISEISRNLKGLAKEINCPILALSQLNRSLEQ--RQNKRPIMSDLRESGAIEQDADVILFIYRDEVY 413 (452)
Q Consensus 341 ~-~~~----~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~--r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~ 413 (452)
. .+. .+.+.+..++..|+.+|+++||+|+++.|+...... .....| .+...+++.+++.+.|.+..
T Consensus 208 e~~~~~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tnqv~~~~~~~~~~~~~~-----~~G~~~~h~~~~rl~l~~~~-- 280 (310)
T TIGR02236 208 EYVGRGALAERQQKLNKHLHDLLRLADLYNAAVVVTNQVMARPDAFFGDPTRP-----IGGHILGHAATFRVYLRKGK-- 280 (310)
T ss_pred hhcCchhHHHHHHHHHHHHHHHHHHHHHhCcEEEEeceeeecCccccCccccC-----CcchhhhhheeEEEEEEecC--
Confidence 2 111 123446788889999999999999999999865321 111233 33457899999999998742
Q ss_pred ccCCCCCCeEEEEEeeccCCCcceEEE
Q psy2891 414 NQNSADKGIAEIIVSKQRNGPIGNIRL 440 (452)
Q Consensus 414 ~~~~~~~~~~~l~i~KnR~G~~g~~~l 440 (452)
.+.+.+.+.|||+++.|...|
T Consensus 281 ------~~~R~~~~~k~~~~~~~~~~f 301 (310)
T TIGR02236 281 ------GDKRIARLVDSPHLPEGEAVF 301 (310)
T ss_pred ------CCeEEEEEEECCCCCCeeEEE
Confidence 135789999999999998743
No 50
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=99.82 E-value=1.3e-18 Score=159.84 Aligned_cols=189 Identities=19% Similarity=0.244 Sum_probs=130.2
Q ss_pred cccc-cCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC-CHHHHHHHHHHHhCCCCccccccCCCCc
Q psy2891 204 LDKI-TSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM-SGIQLAMRMLGSVGKLDQHKLRTGRLSS 281 (452)
Q Consensus 204 LD~~-~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~-~~~~i~~R~~a~~~~i~~~~i~~g~l~~ 281 (452)
||++ .||+++|.++.|+|+||+|||+|+++++.+.+. .|.+|+||++|. ++..+.+...+.
T Consensus 1 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~-~g~~v~yi~~e~~~~~rl~~~~~~~---------------- 63 (209)
T TIGR02237 1 IDELLGGGVERGTITQIYGPPGSGKTNICMILAVNAAR-QGKKVVYIDTEGLSPERFKQIAEDR---------------- 63 (209)
T ss_pred ChhhhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEECCCCCHHHHHHHHHhC----------------
Confidence 6776 689999999999999999999999999999975 689999999995 766665543311
Q ss_pred chHHHHHHHHHHHhCCCeEEEcCCCCCHHHH---HHHHHHHHHHcCCccEEEEcCcchhccCC-CCC--CHHHHHHHHHH
Q psy2891 282 DDWPRINDSIKKINKSQLYIDETPSLNVIEL---RANSRRLSRQCGKIGVIIIDYLQLMSANS-RGE--NRATEISEISR 355 (452)
Q Consensus 282 ~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i---~~~i~~~~~~~~~~~~vvID~l~~i~~~~-~~~--~~~~~~~~i~~ 355 (452)
++. + ..++++.+. .+..++ ...+..+..++ ++++||||+++.+.... ... .+...+...+.
T Consensus 64 --~~~-------~-~~~i~~~~~--~~~~~~~~~~~~l~~~~~~~-~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~ 130 (209)
T TIGR02237 64 --PER-------A-LSNFIVFEV--FDFDEQGVAIQKTSKFIDRD-SASLVVVDSFTALYRLELSDDRISRNRELARQLT 130 (209)
T ss_pred --hHH-------H-hcCEEEEEC--CCHHHHHHHHHHHHHHHhhc-CccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHH
Confidence 001 1 124555433 333343 34444444444 49999999999875321 111 13445677788
Q ss_pred HHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccccCCCCCCeEEEEEeeccCCCc
Q psy2891 356 NLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQRNGPI 435 (452)
Q Consensus 356 ~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~~~~~~~~l~i~KnR~G~~ 435 (452)
.|+.+|+++|+++++++|++..... ...+| .++..+++.+|.++.|.+.+ +...+.+.|+|..+.
T Consensus 131 ~L~~~~~~~~v~vl~t~~~~~~~~~-~~~~~-----~gg~~~~~~~d~vi~l~~~~---------~~r~~~i~k~~~~~~ 195 (209)
T TIGR02237 131 LLLSLARKKNLAVVITNQVYTDVNN-GTLRP-----LGGHLLEHWSKVILRLEKFR---------GRRLATLEKHRSRPE 195 (209)
T ss_pred HHHHHHHHcCCEEEEEcccEEecCC-CCCcC-----CCcchhheeeeEEEEEEecC---------CEEEEEEEECCCCCC
Confidence 8999999999999999998754321 11123 23446799999999997641 235667888888776
Q ss_pred ce
Q psy2891 436 GN 437 (452)
Q Consensus 436 g~ 437 (452)
|.
T Consensus 196 ~~ 197 (209)
T TIGR02237 196 GE 197 (209)
T ss_pred CC
Confidence 54
No 51
>PTZ00035 Rad51 protein; Provisional
Probab=99.82 E-value=2.1e-18 Score=168.08 Aligned_cols=210 Identities=17% Similarity=0.219 Sum_probs=144.6
Q ss_pred CccccccCccccccc-cCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHh-----CCCcEEEEeCCCC--HHHHHHHHHH
Q psy2891 193 DVTGISTGFFELDKI-TSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE-----NKLPVAIFSMEMS--GIQLAMRMLG 264 (452)
Q Consensus 193 ~~~~i~tg~~~LD~~-~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~-----~g~~vl~~s~E~~--~~~i~~R~~a 264 (452)
....++||++.||++ .||+++|+++.|.|+||+|||+|+++++.....- .+.+|+||+.|.+ ++++.....
T Consensus 96 ~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~- 174 (337)
T PTZ00035 96 NIIRITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAE- 174 (337)
T ss_pred cCccccCCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHH-
Confidence 345799999999998 6899999999999999999999999999876421 3568999999985 555443322
Q ss_pred HhCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHH---HHcCCccEEEEcCcchhccCC
Q psy2891 265 SVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLS---RQCGKIGVIIIDYLQLMSANS 341 (452)
Q Consensus 265 ~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~---~~~~~~~~vvID~l~~i~~~~ 341 (452)
..+++... + + .++++.. ..+.+++...+..+. .+. ++++||||+++.+....
T Consensus 175 -~~g~~~~~-------------~------l--~nI~~~~--~~~~e~~~~~l~~~~~~l~~~-~~~lvVIDSital~r~~ 229 (337)
T PTZ00035 175 -RFGLDPED-------------V------L--DNIAYAR--AYNHEHQMQLLSQAAAKMAEE-RFALLIVDSATALFRVD 229 (337)
T ss_pred -HhCCChHh-------------H------h--hceEEEc--cCCHHHHHHHHHHHHHHhhcc-CccEEEEECcHHhhhhh
Confidence 12222110 0 1 1344432 345555555443332 334 59999999999865432
Q ss_pred -CC----CCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhc-----CCCCCCchhhhhhchhhhhhceeEEEecCc
Q psy2891 342 -RG----ENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQR-----QNKRPIMSDLRESGAIEQDADVILFIYRDE 411 (452)
Q Consensus 342 -~~----~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r-----~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~ 411 (452)
.+ ..+.+.+.+++..|+.+|+++||+|+++.|+....... ....|. +...+.+.+++.+.|.+..
T Consensus 230 ~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavvvtNqv~~~~~~~~~~~~~~~~p~-----gG~~~~h~~~~Rl~l~k~~ 304 (337)
T PTZ00035 230 YSGRGELAERQQHLGKFLRALQKLADEFNVAVVITNQVMADVDGASMFVADPKKPI-----GGHIIAHASTTRLSLRKGR 304 (337)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHcCcEEEEecceEEecCCccccCCCCccCC-----chHHHHhheeEEEEEEecC
Confidence 11 12344578899999999999999999999998754211 112332 3445788899999998652
Q ss_pred ccccCCCCCCeEEEEEeeccCCCcceEEEE
Q psy2891 412 VYNQNSADKGIAEIIVSKQRNGPIGNIRLT 441 (452)
Q Consensus 412 ~~~~~~~~~~~~~l~i~KnR~G~~g~~~l~ 441 (452)
.+.+.+.+.|+++.+.+...|.
T Consensus 305 --------~~~R~~~i~ksp~~p~~~~~f~ 326 (337)
T PTZ00035 305 --------GEQRICKIYDSPNLPESEAVFA 326 (337)
T ss_pred --------CCeeEEEEEECCCCCCeeEEEE
Confidence 1346788999999999886544
No 52
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.82 E-value=1.8e-18 Score=161.60 Aligned_cols=203 Identities=22% Similarity=0.173 Sum_probs=141.2
Q ss_pred CccccccCccccccc-cCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCc
Q psy2891 193 DVTGISTGFFELDKI-TSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQ 271 (452)
Q Consensus 193 ~~~~i~tg~~~LD~~-~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~ 271 (452)
....++||++.||++ .||+++|.+++|.|+||+|||+|+.+++...+. +|.+|+|+++|.+++++..++.+ .|++.
T Consensus 3 ~~~~~~tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~e~~~~~~~~~~~~--~g~~~ 79 (234)
T PRK06067 3 KKEIISTGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVITTENTSKSYLKQMES--VKIDI 79 (234)
T ss_pred CceEEecCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEEcCCCHHHHHHHHHH--CCCCh
Confidence 455799999999998 589999999999999999999999999998875 79999999999999999999865 45554
Q ss_pred cccc-cCCCCcchHHHHHHHHHHHhCCCeEEE--cCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHH
Q psy2891 272 HKLR-TGRLSSDDWPRINDSIKKINKSQLYID--ETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRAT 348 (452)
Q Consensus 272 ~~i~-~g~l~~~~~~~~~~a~~~l~~~~l~i~--~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~ 348 (452)
.... .|.+.-. ++... .......+++...+.....+++ +++||||++..+.... + ..
T Consensus 80 ~~~~~~g~l~i~---------------~~~~~~~~~~~~~~~~ll~~l~~~i~~~~-~~~iviDs~t~~~~~~---~-~~ 139 (234)
T PRK06067 80 SDFFLWGYLRIF---------------PLNTEGFEWNSTLANKLLELIIEFIKSKR-EDVIIIDSLTIFATYA---E-ED 139 (234)
T ss_pred hHHHhCCCceEE---------------eccccccccCcchHHHHHHHHHHHHHhcC-CCEEEEecHHHHHhcC---C-HH
Confidence 4321 1111000 00000 0112345677777777776665 9999999999764321 2 23
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccccCCCCCCeEEEEEe
Q psy2891 349 EISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVS 428 (452)
Q Consensus 349 ~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~~~~~~~~l~i~ 428 (452)
.+..+.+.|+.+++ .++++++++|...... . ....+++.+|.++.|...+. .....+.|.|.
T Consensus 140 ~~~~~l~~l~~l~~-~g~tvllt~~~~~~~~----------~--~~~~~~~l~DgvI~L~~~~~-----~~~~~r~l~i~ 201 (234)
T PRK06067 140 DILNFLTEAKNLVD-LGKTILITLHPYAFSE----------E--LLSRIRSICDVYLKLRAEQI-----GGRYVKVLEVV 201 (234)
T ss_pred HHHHHHHHHHHHHh-CCCEEEEEecCCcCCH----------H--HHHHHHhheEEEEEEEeecc-----CCEEeEEEEEE
Confidence 35666667776665 5888888887543211 0 12346888999999975432 12334679999
Q ss_pred eccCCCcc
Q psy2891 429 KQRNGPIG 436 (452)
Q Consensus 429 KnR~G~~g 436 (452)
|.|.++..
T Consensus 202 K~Rg~~~~ 209 (234)
T PRK06067 202 KLRGARKT 209 (234)
T ss_pred hhcCCCCC
Confidence 99987543
No 53
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=99.82 E-value=9.3e-19 Score=164.60 Aligned_cols=210 Identities=20% Similarity=0.328 Sum_probs=143.4
Q ss_pred cccccCccccccc-cCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHh-----CCCcEEEEeCCCCHHHHHHHHHHHhCC
Q psy2891 195 TGISTGFFELDKI-TSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE-----NKLPVAIFSMEMSGIQLAMRMLGSVGK 268 (452)
Q Consensus 195 ~~i~tg~~~LD~~-~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~-----~g~~vl~~s~E~~~~~i~~R~~a~~~~ 268 (452)
..|+||.+.||.+ .||+++|.++-|+|+||+|||.||+|++.++... .+.+|+||+.|.+-. ..|+....-
T Consensus 18 ~~i~Tg~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~--~~Rl~~i~~- 94 (256)
T PF08423_consen 18 SRISTGCKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFS--PERLQQIAE- 94 (256)
T ss_dssp -EE--SSHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS---HHHHHHHHH-
T ss_pred CeeCCCCHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCC--HHHHHHHhh-
Confidence 4799999999998 5789999999999999999999999999987642 256899999998532 123322110
Q ss_pred CCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHH---HHcCCccEEEEcCcchhccCC---C
Q psy2891 269 LDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLS---RQCGKIGVIIIDYLQLMSANS---R 342 (452)
Q Consensus 269 i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~---~~~~~~~~vvID~l~~i~~~~---~ 342 (452)
+ -.++.+ . . +. ++++.. ..+.+++.+.+..+. .+. ++++||||++..+.... .
T Consensus 95 ----~---~~~~~~---~---~---l~--~I~v~~--~~~~~~l~~~L~~l~~~l~~~-~ikLIVIDSIaalfr~e~~~~ 153 (256)
T PF08423_consen 95 ----R---FGLDPE---E---I---LD--NIFVIR--VFDLEELLELLEQLPKLLSES-KIKLIVIDSIAALFRSEFSGR 153 (256)
T ss_dssp ----H---TTS-HH---H---H---HH--TEEEEE---SSHHHHHHHHHHHHHHHHHS-CEEEEEEETSSHHHHHHSGST
T ss_pred ----c---cccccc---h---h---hh--ceeeee--cCCHHHHHHHHHHHHhhcccc-ceEEEEecchHHHHHHHHccc
Confidence 0 012111 1 1 21 455543 345666666665543 344 59999999999865321 1
Q ss_pred C--CCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhc-----CCCCCCchhhhhhchhhhhhceeEEEecCccccc
Q psy2891 343 G--ENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQR-----QNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQ 415 (452)
Q Consensus 343 ~--~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r-----~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~ 415 (452)
. ..+...+..+++.|+.+|++++++|+++.|+....... ...+|.+ +..+.+.+++.++|.+.+
T Consensus 154 ~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTNqv~~~~~~~~~~~~~~~~Pal-----G~~w~h~~~~Rl~l~k~~---- 224 (256)
T PF08423_consen 154 GDLAERQRMLARLARILKRLARKYNIAVVVTNQVTTKIDSNSLFDGDRLKPAL-----GHSWSHAVTTRLFLSKGR---- 224 (256)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEECSSTT----SSTTSEEETT-----HHHHHHHSSEEEEEEECS----
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCceEEeeceeeecCCcccccccccceecC-----cchhhhhccEEEEEEeCC----
Confidence 1 23567789999999999999999999999998654331 1234543 345889999999998742
Q ss_pred CCCCCCeEEEEEeeccCCCcceEEEE
Q psy2891 416 NSADKGIAEIIVSKQRNGPIGNIRLT 441 (452)
Q Consensus 416 ~~~~~~~~~l~i~KnR~G~~g~~~l~ 441 (452)
...+.+.+.|+++-+.+.+.|.
T Consensus 225 ----~~~R~~~i~ksp~~p~~~~~f~ 246 (256)
T PF08423_consen 225 ----GSERVATIVKSPSLPEGSASFQ 246 (256)
T ss_dssp ----TTEEEEEEEECSSSSSEEEEEE
T ss_pred ----CCeEEEEEeECCCCCCceEEEE
Confidence 1368899999999887766543
No 54
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.81 E-value=1.1e-18 Score=181.10 Aligned_cols=201 Identities=19% Similarity=0.177 Sum_probs=148.1
Q ss_pred ccccccCccccccc-cCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCcc
Q psy2891 194 VTGISTGFFELDKI-TSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQH 272 (452)
Q Consensus 194 ~~~i~tg~~~LD~~-~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~ 272 (452)
...++||++.||++ .||+++|++++|.|+||+|||+|+++++.+.+. .|.+|+|||+|++++++..++.+ .|++..
T Consensus 252 ~~~~~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~-~g~~~~yis~e~~~~~i~~~~~~--~g~~~~ 328 (509)
T PRK09302 252 NERISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACR-RGERCLLFAFEESRAQLIRNARS--WGIDLE 328 (509)
T ss_pred cccccCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHh-CCCcEEEEEecCCHHHHHHHHHH--cCCChH
Confidence 45799999999998 579999999999999999999999999999874 79999999999999999988753 466554
Q ss_pred ccccCCCCcchHHHHHHHHHHHhCCCeEEE--cCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHH
Q psy2891 273 KLRTGRLSSDDWPRINDSIKKINKSQLYID--ETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEI 350 (452)
Q Consensus 273 ~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~--~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~ 350 (452)
.+.. ...+.+. .....+++++...+.....+++ +++||||+|+.+.... . ...+
T Consensus 329 ~~~~-------------------~g~l~i~~~~~~~~~~~~~~~~i~~~i~~~~-~~~vVIDslt~l~~~~---~-~~~~ 384 (509)
T PRK09302 329 KMEE-------------------KGLLKIICARPESYGLEDHLIIIKREIEEFK-PSRVAIDPLSALARGG---S-LNEF 384 (509)
T ss_pred HHhh-------------------cCCceeecCCcccCCHHHHHHHHHHHHHHcC-CCEEEEcCHHHHHHhC---C-HHHH
Confidence 3211 1122222 2234566777777777777775 9999999999886532 1 2345
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccccCCCCCCeEEEEEeec
Q psy2891 351 SEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQ 430 (452)
Q Consensus 351 ~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~~~~~~~~l~i~Kn 430 (452)
.+.+..|..+++++|++++++.|........ .. . ...+++.||.||.|...+.. ..-.+.+.|.|.
T Consensus 385 ~~~l~~l~~~~k~~~~t~l~t~~~~~~~g~~---~~-----~-~~~~~~l~D~vI~L~~~~~~-----~~~~R~l~I~K~ 450 (509)
T PRK09302 385 RQFVIRLTDYLKSEEITGLFTNLTPDFMGSH---SI-----T-ESHISSLTDTWILLQYVEIN-----GEMNRALYVLKM 450 (509)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeccccccCCC---CC-----C-cCceEEeeeEEEEEEEeecC-----CeeEEEEEEEEc
Confidence 6778889999999999999999876422100 00 0 12467899999999875432 122467999999
Q ss_pred cCCCc
Q psy2891 431 RNGPI 435 (452)
Q Consensus 431 R~G~~ 435 (452)
|....
T Consensus 451 Rg~~~ 455 (509)
T PRK09302 451 RGSWH 455 (509)
T ss_pred CCCCC
Confidence 97653
No 55
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.80 E-value=2.8e-18 Score=176.14 Aligned_cols=199 Identities=19% Similarity=0.173 Sum_probs=136.1
Q ss_pred ccccCccccccc-cCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccc
Q psy2891 196 GISTGFFELDKI-TSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKL 274 (452)
Q Consensus 196 ~i~tg~~~LD~~-~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i 274 (452)
.++||++.||++ .||+++|.+++|.|+||+|||+|++|++.+.+.+.|.+|+|||+|++++++..++.+ .|++...+
T Consensus 2 r~~TGI~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~--~G~~~~~~ 79 (484)
T TIGR02655 2 KIRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARS--FGWDLQKL 79 (484)
T ss_pred cCCCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHH--cCCCHHHH
Confidence 489999999998 579999999999999999999999999999876458999999999999999999865 46665543
Q ss_pred ccCCCCcchHHHHHHHHHHHhCCCeEEEcC----------CCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCC
Q psy2891 275 RTGRLSSDDWPRINDSIKKINKSQLYIDET----------PSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGE 344 (452)
Q Consensus 275 ~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~----------~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~ 344 (452)
.. +..+++.+. ..+.++.+...+.......+ ++.|+||++..+.... +
T Consensus 80 ~~-------------------~g~l~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~ls~g~-~qRVvIDSl~aL~~~~--~ 137 (484)
T TIGR02655 80 VD-------------------EGKLFILDASPDPEGQDVVGGFDLSALIERINYAIRKYK-AKRVSIDSVTAVFQQY--D 137 (484)
T ss_pred hh-------------------cCceEEEecCchhccccccccCCHHHHHHHHHHHHHHhC-CcEEEEeehhHhhhhc--C
Confidence 21 112222211 13456666666666656554 9999999998765432 1
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccccCCCCCCeEE
Q psy2891 345 NRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAE 424 (452)
Q Consensus 345 ~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~~~~~~~~ 424 (452)
........+.+-+ ...++.++++++++|...... +....+..+..||.|+.|..... .....+.
T Consensus 138 ~~~~~r~~l~~Li-~~L~~~g~TvLLtsh~~~~~~----------~~~~~~~~e~laDgVI~L~~~~~-----~~~~~R~ 201 (484)
T TIGR02655 138 AVSVVRREIFRLV-ARLKQIGVTTVMTTERIEEYG----------PIARYGVEEFVSDNVVILRNVLE-----GERRRRT 201 (484)
T ss_pred chHHHHHHHHHHH-HHHHHCCCEEEEEecCccccc----------ccccCCceeEeeeeEEEEEEEec-----CCEEEEE
Confidence 1111112233333 333567999999998654221 11112234789999999975432 1122467
Q ss_pred EEEeeccCCC
Q psy2891 425 IIVSKQRNGP 434 (452)
Q Consensus 425 l~i~KnR~G~ 434 (452)
|.|.|.|...
T Consensus 202 l~I~K~Rgs~ 211 (484)
T TIGR02655 202 LEILKLRGTS 211 (484)
T ss_pred EEEEECCCCC
Confidence 9999999654
No 56
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=99.79 E-value=4.7e-18 Score=159.21 Aligned_cols=206 Identities=16% Similarity=0.152 Sum_probs=142.2
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHh-----------CCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcc
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIE-----------NKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSD 282 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~-----------~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~ 282 (452)
|.+.+|+|+||+|||+|++++|+++|.. .+.+|+|+++|++..++.+|+.+...++....+....+..
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~- 79 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFID- 79 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEe-
Confidence 6899999999999999999999998742 3568999999999999999998876554322111100000
Q ss_pred hHHHHHHHHHHHhCCCeEEEcCC-CCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHH
Q psy2891 283 DWPRINDSIKKINKSQLYIDETP-SLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLA 361 (452)
Q Consensus 283 ~~~~~~~a~~~l~~~~l~i~~~~-~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA 361 (452)
.....++.+.... ......+...++.+. ..+ +++||||++..+... ..+....+..++..|+.++
T Consensus 80 ----------~g~~~~l~~~~~~~~~~~~~~~~l~~~~~-~~~-~~lvviDpl~~~~~~--~~~d~~~~~~~~~~L~~~a 145 (239)
T cd01125 80 ----------SGRIQPISIAREGRIIVVPEFERIIEQLL-IRR-IDLVVIDPLVSFHGV--SENDNGAMDAVIKALRRIA 145 (239)
T ss_pred ----------ccCCCceecccCCcccccHHHHHHHHHHH-hcC-CCEEEECChHHhCCC--CcCCHHHHHHHHHHHHHHH
Confidence 0001233333211 223345555444443 344 999999999887332 2445566778899999999
Q ss_pred HHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccccC------CCCCCeEEEEEeeccCC-C
Q psy2891 362 KEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQN------SADKGIAEIIVSKQRNG-P 434 (452)
Q Consensus 362 ~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~------~~~~~~~~l~i~KnR~G-~ 434 (452)
+++|++|++++|.+|..... .....+.|||.++...++.++.+.+......+ +.....+++.+.|+-+| +
T Consensus 146 ~~~g~avl~v~H~~K~~~~~---~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~k~n~~~~ 222 (239)
T cd01125 146 AQTGAAILLVHHVRKGSAKD---GDTQEAARGASALVDGARWVRALTRMTSEEAEKMGVGKAQPGLFFRFGVSKKNNAAA 222 (239)
T ss_pred HHhCCEEEEEeccCcccccC---cccccccCcHHHHhcccceEEEEeeCCHHHHHhcCCChhhcceEEEecccccccCCC
Confidence 99999999999999865321 14667899999999999999999986532211 11233567788888887 5
Q ss_pred cce
Q psy2891 435 IGN 437 (452)
Q Consensus 435 ~g~ 437 (452)
.+.
T Consensus 223 ~~~ 225 (239)
T cd01125 223 TEA 225 (239)
T ss_pred CCC
Confidence 554
No 57
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.76 E-value=2.5e-17 Score=148.36 Aligned_cols=177 Identities=21% Similarity=0.176 Sum_probs=120.0
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHHHHh
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKIN 295 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~ 295 (452)
.++|.|+||+|||+|+++++...+. .|.+|+|+|+|++.+++..++.+. |++...+..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~-~g~~v~~~s~e~~~~~~~~~~~~~--g~~~~~l~~------------------- 58 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLA-RGEPGLYVTLEESPEELIENAESL--GWDLERLED------------------- 58 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH-CCCcEEEEECCCCHHHHHHHHHHc--CCChHHHHh-------------------
Confidence 3789999999999999999999984 789999999999999999998754 666543321
Q ss_pred CCCeEEEcCC--CCCH------HHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCc
Q psy2891 296 KSQLYIDETP--SLNV------IELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCP 367 (452)
Q Consensus 296 ~~~l~i~~~~--~~t~------~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~ 367 (452)
...+.+.+.. .++. .++...+.+.....+ ++++|||+++.+... +.......+.+.++.+. +.|++
T Consensus 59 ~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~-~~~lviD~~~~~~~~----~~~~~~~~i~~l~~~l~-~~g~t 132 (187)
T cd01124 59 EGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFK-AKRVVIDSVSGLLLM----EQSTARLEIRRLLFALK-RFGVT 132 (187)
T ss_pred cCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhC-CCEEEEeCcHHHhhc----ChHHHHHHHHHHHHHHH-HCCCE
Confidence 0112222211 1111 144566666656665 999999999987653 12222233444444444 45999
Q ss_pred EEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccccCCCCCCeEEEEEeeccCCCc
Q psy2891 368 ILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQRNGPI 435 (452)
Q Consensus 368 vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~~~~~~~~l~i~KnR~G~~ 435 (452)
+++++|.....+ ...+++.+++.||.++.|.+.... ......+.|.|+|.++.
T Consensus 133 vi~v~~~~~~~~----------~~~~~~~~~~~aD~ii~l~~~~~~-----~~~~r~l~i~K~R~~~~ 185 (187)
T cd01124 133 TLLTSEQSGLEG----------TGFGGGDVEYLVDGVIRLRLDEEG-----GRLRRSLSVVKMRGGPH 185 (187)
T ss_pred EEEEeccccCCC----------cccCcCceeEeeeEEEEEEEEccC-----CEEEEEEEEEEccCCCC
Confidence 999999876431 123466789999999999876421 12246799999997654
No 58
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=99.73 E-value=1.3e-16 Score=151.31 Aligned_cols=209 Identities=24% Similarity=0.228 Sum_probs=147.2
Q ss_pred cccccCccccccc-cCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccc
Q psy2891 195 TGISTGFFELDKI-TSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHK 273 (452)
Q Consensus 195 ~~i~tg~~~LD~~-~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~ 273 (452)
..+|||++.||++ .||+++|.+++|.|+||+|||+|++|++.+.+. .|.+|+|+|+|.+++++.+.+.+ .|++...
T Consensus 3 ~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~-~ge~vlyvs~~e~~~~l~~~~~~--~g~d~~~ 79 (260)
T COG0467 3 ERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAR-EGEPVLYVSTEESPEELLENARS--FGWDLEV 79 (260)
T ss_pred ccccCCCcchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHh-cCCcEEEEEecCCHHHHHHHHHH--cCCCHHH
Confidence 4689999999998 678999999999999999999999999999985 69999999999999999988875 6777653
Q ss_pred cc-cCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHH
Q psy2891 274 LR-TGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISE 352 (452)
Q Consensus 274 i~-~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~ 352 (452)
+. .|.+.-.+... ........+. ........+...++......+ ...+|||++..+.... +.......
T Consensus 80 ~~~~g~l~i~d~~~------~~~~~~~~~~-~~~~~~~~l~~~I~~~~~~~~-~~~~ViDsi~~~~~~~---~~~~~~r~ 148 (260)
T COG0467 80 YIEKGKLAILDAFL------SEKGLVSIVV-GDPLDLEELLDRIREIVEKEG-ADRVVIDSITELTLYL---NDPALVRR 148 (260)
T ss_pred HhhcCCEEEEEccc------cccccccccc-cCCccHHHHHHHHHHHHHHhC-CCEEEEeCCchHhhhc---CchHHHHH
Confidence 32 23221111000 0000000011 113567788888888888886 9999999999665432 22222367
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccccCCCCCCeE-EEEEeecc
Q psy2891 353 ISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIA-EIIVSKQR 431 (452)
Q Consensus 353 i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~~~~~~~-~l~i~KnR 431 (452)
+...++.+.++++++.+++++..-.. +. + ++-.+..+|.++.|...... ..... .+.+.|-|
T Consensus 149 ~~~~l~~~~~~~~~t~~~~~~~~~~~--~~---~-------~~~~~~~vdgvI~l~~~~~~-----~~~~r~~~~i~k~r 211 (260)
T COG0467 149 ILLLLKRFLKKLGVTSLLTTEAPVEE--RG---E-------SGVEEYIVDGVIRLDLKEIE-----GGGDRRYLRILKMR 211 (260)
T ss_pred HHHHHHHHHHhCCCEEEEEecccccC--CC---c-------cceEEEEEEEEEEEeeeccc-----CceEEEEEEEEecc
Confidence 88899999999999999998864321 10 1 13445589999999764321 12334 78888988
Q ss_pred CCC
Q psy2891 432 NGP 434 (452)
Q Consensus 432 ~G~ 434 (452)
.-.
T Consensus 212 ~~~ 214 (260)
T COG0467 212 GTP 214 (260)
T ss_pred ccc
Confidence 633
No 59
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=99.72 E-value=8e-16 Score=161.86 Aligned_cols=211 Identities=19% Similarity=0.186 Sum_probs=146.7
Q ss_pred CccccccCcccccccc--CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCC
Q psy2891 193 DVTGISTGFFELDKIT--SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLD 270 (452)
Q Consensus 193 ~~~~i~tg~~~LD~~~--gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~ 270 (452)
....++||++.||.++ |||++|.++.|+|+||+|||+|+++++.+++ ..|.+|+||+.|.+...- + +...|++
T Consensus 37 ~v~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~-~~G~~v~yId~E~t~~~~--~--A~~lGvD 111 (790)
T PRK09519 37 PISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ-AAGGVAAFIDAEHALDPD--Y--AKKLGVD 111 (790)
T ss_pred CCceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEECCccchhHH--H--HHHcCCC
Confidence 4568999999999984 6999999999999999999999999999886 478999999999987732 2 2224555
Q ss_pred ccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCC----C-CCC
Q psy2891 271 QHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANS----R-GEN 345 (452)
Q Consensus 271 ~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~----~-~~~ 345 (452)
.++ +.+.. ..+.+++...+..+.++.+ +++||||+++.+.+.. . ...
T Consensus 112 l~~-------------------------llv~~--~~~~E~~l~~i~~lv~~~~-~~LVVIDSI~aL~~r~E~~g~~g~~ 163 (790)
T PRK09519 112 TDS-------------------------LLVSQ--PDTGEQALEIADMLIRSGA-LDIVVIDSVAALVPRAELEGEMGDS 163 (790)
T ss_pred hhH-------------------------eEEec--CCCHHHHHHHHHHHhhcCC-CeEEEEcchhhhcchhhccCCCCcc
Confidence 432 22222 2345667777777766654 9999999999887511 1 111
Q ss_pred ---H-HHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccccCC-CCC
Q psy2891 346 ---R-ATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNS-ADK 420 (452)
Q Consensus 346 ---~-~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~-~~~ 420 (452)
. ...+...++.|..+++++||++|++.|+.-....- ...| ..--|...+.+.|.+-|.|.+.+...+.. ..-
T Consensus 164 ~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TNQv~~~~g~~-fg~p--~~~~GG~~l~h~ss~Ri~lrk~~~ik~~~~~~G 240 (790)
T PRK09519 164 HVGLQARLMSQALRKMTGALNNSGTTAIFINQLRDKIGVM-FGSP--ETTTGGKALKFYASVRMDVRRVETLKDGTNAVG 240 (790)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceecCCCc-CCCC--CcCCCCcccceeccEEEEeeeccccccCccccc
Confidence 1 22235677889999999999999999997644210 0111 11234567889999999998754322211 122
Q ss_pred CeEEEEEeeccCCCcceEE
Q psy2891 421 GIAEIIVSKQRNGPIGNIR 439 (452)
Q Consensus 421 ~~~~l~i~KnR~G~~g~~~ 439 (452)
+.+.+.+.||+.=+.++..
T Consensus 241 ~~~~~kv~ks~cLpe~e~v 259 (790)
T PRK09519 241 NRTRVKVVKNKCLAEGTRI 259 (790)
T ss_pred eEEEEEEEECCCCCCceEE
Confidence 3578999999875555544
No 60
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.71 E-value=9.9e-16 Score=142.08 Aligned_cols=209 Identities=18% Similarity=0.176 Sum_probs=136.4
Q ss_pred cccccCccccccc-cCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccc
Q psy2891 195 TGISTGFFELDKI-TSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHK 273 (452)
Q Consensus 195 ~~i~tg~~~LD~~-~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~ 273 (452)
..+.++++.||+. .||+++|++++|.|+||+|||+|+++++...+. +|.+++|+++|.++.++...+.+ .|++...
T Consensus 4 ~~~~~~~~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~-~g~~~~yi~~e~~~~~~~~~~~~--~g~~~~~ 80 (230)
T PRK08533 4 AKIELSRDELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQ-NGYSVSYVSTQLTTTEFIKQMMS--LGYDINK 80 (230)
T ss_pred EEEEEEEeeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh-CCCcEEEEeCCCCHHHHHHHHHH--hCCchHH
Confidence 3578899999998 578999999999999999999999999999864 78999999999999999888743 3443332
Q ss_pred cccCCCCcchHHHHHHHHHHHhCCCeEEEc-CCCC-CH---HHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHH
Q psy2891 274 LRTGRLSSDDWPRINDSIKKINKSQLYIDE-TPSL-NV---IELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRAT 348 (452)
Q Consensus 274 i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~-~~~~-t~---~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~ 348 (452)
.. ....+.+.+ .+.. .. +.....+....... +++++|||++..+.... ....
T Consensus 81 ~~-------------------~~~~l~~~~~~~~~~~~~~~~~~l~~il~~~~~~-~~~~lVIDe~t~~l~~~---~d~~ 137 (230)
T PRK08533 81 KL-------------------ISGKLLYIPVYPLLSGNSEKRKFLKKLMNTRRFY-EKDVIIIDSLSSLISND---ASEV 137 (230)
T ss_pred Hh-------------------hcCcEEEEEecccccChHHHHHHHHHHHHHHHhc-CCCEEEEECccHHhcCC---cchH
Confidence 11 011222211 1111 11 22222222222334 48999999999765321 1112
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccccCCCCCCeEEEEEe
Q psy2891 349 EISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVS 428 (452)
Q Consensus 349 ~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~~~~~~~~l~i~ 428 (452)
....+.+.|+.++++ |++++++++...... .....+++.||.|+.|...+.. ..-.+.+.|.
T Consensus 138 ~~~~l~~~l~~l~~~-g~tvi~t~~~~~~~~------------~~~~~~~~~~DgvI~L~~~~~~-----~~~~R~i~V~ 199 (230)
T PRK08533 138 AVNDLMAFFKRISSL-NKVIILTANPKELDE------------SVLTILRTAATMLIRLEVKVFG-----GDLKNSAKIV 199 (230)
T ss_pred HHHHHHHHHHHHHhC-CCEEEEEeccccccc------------ccceeEEEeeeEEEEEEEeecC-----CEEEEEEEEE
Confidence 335566777777654 778888776542110 0123578999999999865432 1123679999
Q ss_pred eccC--CCcc-eEEEEEEcCcc
Q psy2891 429 KQRN--GPIG-NIRLTFSGQYT 447 (452)
Q Consensus 429 KnR~--G~~g-~~~l~f~~~~~ 447 (452)
|.|. +.++ .++|.+.+..+
T Consensus 200 KmR~~~~~~~~~~~f~i~~~~g 221 (230)
T PRK08533 200 KYNMAKGSFQKSIPFRVEPKIG 221 (230)
T ss_pred EecCCccccCCEEEEEEcCCcc
Confidence 9997 2334 57888876654
No 61
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=99.69 E-value=3.2e-15 Score=142.88 Aligned_cols=215 Identities=19% Similarity=0.191 Sum_probs=142.6
Q ss_pred CccccccCccccccc-c-CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCC
Q psy2891 193 DVTGISTGFFELDKI-T-SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLD 270 (452)
Q Consensus 193 ~~~~i~tg~~~LD~~-~-gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~ 270 (452)
....+|||++.||.. . |||++|.++.|+|++++|||+|+++++.++. +.|..|+||..|.+... .+++ ..|++
T Consensus 30 ~~~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q-~~g~~~a~ID~e~~ld~---~~a~-~lGvd 104 (322)
T PF00154_consen 30 NIEVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQ-KQGGICAFIDAEHALDP---EYAE-SLGVD 104 (322)
T ss_dssp SS-EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH-HTT-EEEEEESSS---H---HHHH-HTT--
T ss_pred ccceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhh-cccceeEEecCcccchh---hHHH-hcCcc
Confidence 456899999999997 3 7999999999999999999999999998875 46899999999987543 2222 24777
Q ss_pred ccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCC--------C
Q psy2891 271 QHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANS--------R 342 (452)
Q Consensus 271 ~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~--------~ 342 (452)
.++ +++.. | -+.++..+.++.+.+.. .+++||||++..+.+.. .
T Consensus 105 l~r-------------------------llv~~-P-~~~E~al~~~e~lirsg-~~~lVVvDSv~al~p~~E~e~~~~~~ 156 (322)
T PF00154_consen 105 LDR-------------------------LLVVQ-P-DTGEQALWIAEQLIRSG-AVDLVVVDSVAALVPKAELEGEIGDQ 156 (322)
T ss_dssp GGG-------------------------EEEEE---SSHHHHHHHHHHHHHTT-SESEEEEE-CTT-B-HHHHTTSTSST
T ss_pred ccc-------------------------eEEec-C-CcHHHHHHHHHHHhhcc-cccEEEEecCcccCCHHHHhhccccc
Confidence 653 33332 2 24566677777777654 49999999999876531 0
Q ss_pred C-CCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccccCCCCC-
Q psy2891 343 G-ENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADK- 420 (452)
Q Consensus 343 ~-~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~~~~- 420 (452)
. ......+...++.|..+..+.||++|++.|+....... ...|. -..|..++.+.|++.+.+.+-+...+..+.-
T Consensus 157 ~~g~~Ar~ms~~lr~lt~~l~~~~~~~i~INQ~R~~ig~~-~g~~~--~t~GG~alkfyas~rl~i~k~~~ik~~~~~iG 233 (322)
T PF00154_consen 157 QVGLQARLMSQALRKLTPLLSKSNTTLIFINQVRDKIGVM-FGNPE--TTPGGRALKFYASVRLEIRKKEQIKEGDEVIG 233 (322)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHTTT-EEEEEEEESSSSSSS-SSSSS--CCTSHHHHHHHCSEEEEEEEEEEEEETTCECE
T ss_pred cCcchHHHHHHHHHHHHHHHHhhceEEEEeehHHHHHhhc-cCCCc--CCCCCchhhhhhhhHHhhhcccccccCCcccc
Confidence 1 12345678888888888999999999999998654321 11232 2347778999999999998764332222112
Q ss_pred CeEEEEEeeccCCCcce---EEEEEE
Q psy2891 421 GIAEIIVSKQRNGPIGN---IRLTFS 443 (452)
Q Consensus 421 ~~~~l~i~KnR~G~~g~---~~l~f~ 443 (452)
..+.+.+.|||..++-. +.+.|+
T Consensus 234 ~~~~vkv~KnKva~P~k~a~~~i~y~ 259 (322)
T PF00154_consen 234 NKIKVKVVKNKVAPPFKKAEFDIYYG 259 (322)
T ss_dssp EEEEEEEEEESSS-TTEEEEEEEETT
T ss_pred cEEEEEEEEcccCCCcceeEEEEecC
Confidence 24789999999986543 345543
No 62
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=99.65 E-value=1.4e-14 Score=135.86 Aligned_cols=216 Identities=22% Similarity=0.239 Sum_probs=149.4
Q ss_pred CccccccCccccccc-cCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCc
Q psy2891 193 DVTGISTGFFELDKI-TSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQ 271 (452)
Q Consensus 193 ~~~~i~tg~~~LD~~-~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~ 271 (452)
....++||...||.+ .||+++|.++-|+|++|+|||++|+|++.++.. .|..|+|++.|.+-+.-..+-++...
T Consensus 38 ~~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~-~g~~a~fIDtE~~l~p~r~~~l~~~~---- 112 (279)
T COG0468 38 DIEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQK-PGGKAAFIDTEHALDPERAKQLGVDL---- 112 (279)
T ss_pred ccccccccchhHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhc-CCCeEEEEeCCCCCCHHHHHHHHHhh----
Confidence 355799999999998 689999999999999999999999999999964 67899999999754433333222100
Q ss_pred cccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcC-CccEEEEcCcchhccCCC-----CCC
Q psy2891 272 HKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCG-KIGVIIIDYLQLMSANSR-----GEN 345 (452)
Q Consensus 272 ~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~-~~~~vvID~l~~i~~~~~-----~~~ 345 (452)
..++++.. ..+.++-...+..+..... ++++||||++..+..... ...
T Consensus 113 ------------------------~d~l~v~~--~~~~e~q~~i~~~~~~~~~~~i~LvVVDSvaa~~r~~~~~d~~~~~ 166 (279)
T COG0468 113 ------------------------LDNLLVSQ--PDTGEQQLEIAEKLARSGAEKIDLLVVDSVAALVRAEEIEDGHLGL 166 (279)
T ss_pred ------------------------hcceeEec--CCCHHHHHHHHHHHHHhccCCCCEEEEecCcccchhhhcCcchHHH
Confidence 12455543 3445555555555544321 399999999998776431 122
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccccCCCCCCeEEE
Q psy2891 346 RATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEI 425 (452)
Q Consensus 346 ~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~~~~~~~~l 425 (452)
+.+.+...++.|..+|+++|++|+++.|+.-....-.+ .| ..--|...+.+.|.+.+.+.+...-. +. ..+.+.+
T Consensus 167 ~~r~ls~~l~~L~~~a~~~~~~vi~~NQv~~k~~~~f~-~~--~~~~GG~~L~~~as~rl~l~k~~~~~-~~-~g~~r~~ 241 (279)
T COG0468 167 RARLLSKALRKLTRLANKYNTAVIFTNQVRAKIGVMFG-DP--ETTTGGNALKFYASVRLDLRRIESLK-ED-VGNKRRV 241 (279)
T ss_pred HHHHHHHHHHHHHHHHHHcCcEEEEECceeeecCcccC-Cc--ccCCCchHHHhhhheEEEEeeccccc-cc-cCCeEEE
Confidence 45567888899999999999999999999754322110 11 12234557788899999887763211 11 2346889
Q ss_pred EEeeccCCCcc-eE--EEEEEc
Q psy2891 426 IVSKQRNGPIG-NI--RLTFSG 444 (452)
Q Consensus 426 ~i~KnR~G~~g-~~--~l~f~~ 444 (452)
.+.|||+-|.+ .+ .+.|.+
T Consensus 242 ~vvk~~~~p~~~~a~f~I~~~~ 263 (279)
T COG0468 242 KVVKNKVAPPFKEAEFDITYGG 263 (279)
T ss_pred EEEeCCCCCCCceeEEEeecCc
Confidence 99999998877 44 445543
No 63
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.59 E-value=1.4e-14 Score=126.97 Aligned_cols=163 Identities=22% Similarity=0.250 Sum_probs=112.6
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHHHHh
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKIN 295 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~ 295 (452)
+++|.|+||+|||+|+.+++..++. .+.+|+|++.|.+...+..++...... ....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~e~~~~~~~~~~~~~~~~-----------------------~~~~ 56 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEIEELTERLIGESLK-----------------------GALD 56 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEECCcchHHHHHHHhhhhhc-----------------------cccc
Confidence 4789999999999999999999875 689999999999988877665211000 0011
Q ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCC--CCCHHHHHHHHHHHHHHHHHHhCCcEEEEec
Q psy2891 296 KSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSR--GENRATEISEISRNLKGLAKEINCPILALSQ 373 (452)
Q Consensus 296 ~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~--~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~q 373 (452)
...++...............+....... +++++|||+++.+..... .......+...+..|...+++.++++|+++|
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~ 135 (165)
T cd01120 57 NLIIVFATADDPAAARLLSKAERLRERG-GDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQ 135 (165)
T ss_pred cEEEEEcCCCCCcHHHHHHHHHHHHhCC-CCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEe
Confidence 1122222333334444444455555555 499999999998764321 0112234567788889899999999999999
Q ss_pred CCcchhhcCCCCCCchhhhhhchhhhhhceeEEEec
Q psy2891 374 LNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYR 409 (452)
Q Consensus 374 l~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r 409 (452)
.++..+...+ +.+++..+++.||.++.|.|
T Consensus 136 ~~~~~~~~~~------~~~~~~~~~~~~d~~~~l~~ 165 (165)
T cd01120 136 VPSGDKGDPR------LTRGAQNLEDIADTVIVLSR 165 (165)
T ss_pred cCCccccCcc------cccCccceeeecceEEEEeC
Confidence 9886543322 16778899999999999864
No 64
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.52 E-value=5.6e-13 Score=117.43 Aligned_cols=207 Identities=23% Similarity=0.268 Sum_probs=138.8
Q ss_pred cccCccccccc-cCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccc
Q psy2891 197 ISTGFFELDKI-TSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLR 275 (452)
Q Consensus 197 i~tg~~~LD~~-~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~ 275 (452)
+++|-++||+- .||++-|++++|-|..|+|||.|++++++.++ .+|++|.|+|.|++..+....|.+.-.++... +.
T Consensus 10 i~~gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L-~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~-~l 87 (235)
T COG2874 10 IKSGNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFL-MNGYRVTYVSTELTVREFIKQMESLSYDVSDF-LL 87 (235)
T ss_pred ccCCcHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHH-hCCceEEEEEechhHHHHHHHHHhcCCCchHH-Hh
Confidence 78999999986 67899999999999999999999999999996 58999999999999999999998743332211 11
Q ss_pred cCCCCcchHHHHHHHHHHHhCCCeEEE-c--CCCCC---HHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHH
Q psy2891 276 TGRLSSDDWPRINDSIKKINKSQLYID-E--TPSLN---VIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATE 349 (452)
Q Consensus 276 ~g~l~~~~~~~~~~a~~~l~~~~l~i~-~--~~~~t---~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~ 349 (452)
.|.+ .++. + .-..+ -..+...+....+.. +-++||||+|..+... +...+
T Consensus 88 ~G~l-------------------~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~-~~dViIIDSls~~~~~----~~~~~ 143 (235)
T COG2874 88 SGRL-------------------LFFPVNLEPVNWGRRSARKLLDLLLEFIKRW-EKDVIIIDSLSAFATY----DSEDA 143 (235)
T ss_pred ccee-------------------EEEEecccccccChHHHHHHHHHHHhhHHhh-cCCEEEEecccHHhhc----ccHHH
Confidence 1211 1111 0 11111 122333332333333 4899999999987753 24457
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccccCCCCCCeEEEEEee
Q psy2891 350 ISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSK 429 (452)
Q Consensus 350 ~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~~~~~~~~l~i~K 429 (452)
+-+++..+|.++.+-.+.++.++|-.=. + |. -.-|.+.||+.+.|+-.+.-+ +-.-.+.+.|
T Consensus 144 vl~fm~~~r~l~d~gKvIilTvhp~~l~-e----------~~--~~rirs~~d~~l~L~~~~~Gg-----~~~~~~~i~K 205 (235)
T COG2874 144 VLNFMTFLRKLSDLGKVIILTVHPSALD-E----------DV--LTRIRSACDVYLRLRLEELGG-----DLIKVLEIVK 205 (235)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeChhhcC-H----------HH--HHHHHHhhheeEEEEhhhhCC-----eeeEEEEEee
Confidence 8899999999997555555554432211 0 11 234788999999998765422 2234677889
Q ss_pred ccCCC--cce-EEEEEEcCcc
Q psy2891 430 QRNGP--IGN-IRLTFSGQYT 447 (452)
Q Consensus 430 nR~G~--~g~-~~l~f~~~~~ 447 (452)
-|... .|. +.+.-+|.++
T Consensus 206 ~~ga~~s~~~~I~F~V~P~~G 226 (235)
T COG2874 206 YRGARKSFQNIISFRVEPGFG 226 (235)
T ss_pred ecCchhhcCCceeEEecCCCc
Confidence 88754 343 6777777654
No 65
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=99.46 E-value=1.8e-12 Score=120.34 Aligned_cols=150 Identities=19% Similarity=0.280 Sum_probs=104.2
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHh---------CCCcEEEEeCCCCHHHHHHHHHHHhC--CCCccccccCCC
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE---------NKLPVAIFSMEMSGIQLAMRMLGSVG--KLDQHKLRTGRL 279 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~---------~g~~vl~~s~E~~~~~i~~R~~a~~~--~i~~~~i~~g~l 279 (452)
|+.|-.++|+|++|+|||+++++++.+++.+ ...+|+|+|+|..++.+++|+-.... |++...+++-.+
T Consensus 86 fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~dl 165 (402)
T COG3598 86 FRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNMDL 165 (402)
T ss_pred hhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhhhheec
Confidence 6778788999999999999999999998753 24579999999999999999865332 333333222111
Q ss_pred CcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHH
Q psy2891 280 SSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKG 359 (452)
Q Consensus 280 ~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~ 359 (452)
++ +++. -.....+.+ .+.........+. ++++||||++-.+..+. ++.+.++..+++.+++
T Consensus 166 td------------~~Ga---a~~~d~l~p-kl~rRfek~~~Q~-rp~~vViDp~v~f~~G~--s~s~vqv~~fi~~~rk 226 (402)
T COG3598 166 TD------------VSGA---ADESDVLSP-KLYRRFEKILEQK-RPDFVVIDPFVAFYEGK--SISDVQVKEFIKKTRK 226 (402)
T ss_pred cc------------cccC---CCccccccH-HHHHHHHHHHHHh-CCCeEEEcchhhhcCCc--cchhHHHHHHHHHHHH
Confidence 00 0000 000112333 2222222222333 59999999998887765 4555788999999999
Q ss_pred HHHHhCCcEEEEecCCcchh
Q psy2891 360 LAKEINCPILALSQLNRSLE 379 (452)
Q Consensus 360 lA~~~~i~vi~l~ql~r~~~ 379 (452)
+|..++|+||.+||.+++..
T Consensus 227 la~~l~caIiy~hHtskss~ 246 (402)
T COG3598 227 LARNLECAIIYIHHTSKSSG 246 (402)
T ss_pred HHHhcCCeEEEEeccccccC
Confidence 99999999999999998764
No 66
>KOG1434|consensus
Probab=99.44 E-value=5.3e-13 Score=119.73 Aligned_cols=190 Identities=19% Similarity=0.231 Sum_probs=129.3
Q ss_pred CccccccCccccccc-cCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHH-----hCCCcEEEEeCCCCHHHHHHHHHHHh
Q psy2891 193 DVTGISTGFFELDKI-TSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAI-----ENKLPVAIFSMEMSGIQLAMRMLGSV 266 (452)
Q Consensus 193 ~~~~i~tg~~~LD~~-~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~-----~~g~~vl~~s~E~~~~~i~~R~~a~~ 266 (452)
.+..|.||...||.+ +||++--+++-|+|.||+|||.+..+++..+-. .-+.++.|+..|.+-.-=..+-+|-.
T Consensus 93 ~v~~ItTgs~~lD~ILGGGI~~m~iTEifGefr~GKTQlshtLcVt~QlPr~~Gg~~Gk~ifIDTEgtFrpdRi~~IAe~ 172 (335)
T KOG1434|consen 93 TVGSITTGSSALDDILGGGIPSMSITEIFGEFRCGKTQLSHTLCVTVQLPREMGGVGGKAIFIDTEGTFRPDRIKDIAER 172 (335)
T ss_pred ccceeecchHHHhhhhcCCccchhhHHHcCCCCcCccceeeEEEEEeecchhhCCCCceEEEEecCCccchHHHHHHHHH
Confidence 456899999999998 678999999999999999999999999987643 12568999999987543222223322
Q ss_pred CCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHH---HHHHHHHcCCccEEEEcCcchhccCC--
Q psy2891 267 GKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRAN---SRRLSRQCGKIGVIIIDYLQLMSANS-- 341 (452)
Q Consensus 267 ~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~---i~~~~~~~~~~~~vvID~l~~i~~~~-- 341 (452)
.+++.+... + . -+|+ ...+-++..+. +.....++|+..+||||++......+
T Consensus 173 ~~~d~d~~L---------d-------N----I~y~---Ra~~se~qmelv~~L~~~~se~g~~rlvIVDsIma~FRvDy~ 229 (335)
T KOG1434|consen 173 FKVDPDFTL---------D-------N----ILYF---RAYNSEEQMELVYLLGDFLSEHGKYRLVIVDSIMALFRVDYD 229 (335)
T ss_pred hCCCHHHHH---------H-------H----HHHH---HHcChHHHHHHHHHHHHHHhhcCcEEEEEEeceehheeeccc
Confidence 222221110 0 0 1121 12233343333 44445666789999999998765432
Q ss_pred -CC--CCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhh-----cCCCCCCchhhhhhchhhhhhceeEEEecC
Q psy2891 342 -RG--ENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQ-----RQNKRPIMSDLRESGAIEQDADVILFIYRD 410 (452)
Q Consensus 342 -~~--~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~-----r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~ 410 (452)
++ ..|.+.+...+..|-.+|+++|++|+++.|+...... ..+..|...+ .+.+.+.+-+.|++.
T Consensus 230 grgeLseRqqkLn~ml~kl~~laeefnvAVfltNQvttdpga~~~f~s~~~kp~gGh-----~~aHAsttRlilrkg 301 (335)
T KOG1434|consen 230 GRGELSERQQKLNQMLQKLNKLAEEFNVAVFLTNQVTTDPGAGMTFASQDLKPAGGH-----SWAHASTTRLILRKG 301 (335)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhccEEEEEecceecCCcccccccccccCccccc-----hhhhhhheeEEEEcC
Confidence 22 2456678899999999999999999999999875533 3345665444 466667777777765
No 67
>KOG1564|consensus
Probab=99.37 E-value=2e-11 Score=111.37 Aligned_cols=167 Identities=17% Similarity=0.240 Sum_probs=111.2
Q ss_pred cccccCccccccc-cCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHH-----hCCCcEEEEeCCCCHHHHHHHHHHHhCC
Q psy2891 195 TGISTGFFELDKI-TSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAI-----ENKLPVAIFSMEMSGIQLAMRMLGSVGK 268 (452)
Q Consensus 195 ~~i~tg~~~LD~~-~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~-----~~g~~vl~~s~E~~~~~i~~R~~a~~~~ 268 (452)
..+.||-..||+. .||+..+.++.|+|.+|+|||.|++|+++.+-. +-|..++|++.|.+-.. .|+.....-
T Consensus 82 ~~lttgc~~LD~~L~GGi~~~giTEi~GeSg~GKtQL~lQL~L~VQLp~~~GGL~~~~vYI~TE~~fP~--rRL~qL~~~ 159 (351)
T KOG1564|consen 82 SKLTTGCVALDECLRGGIPTDGITEICGESGCGKTQLLLQLSLCVQLPRSHGGLGGGAVYICTESPFPT--RRLHQLSHT 159 (351)
T ss_pred hhcccccHHHHHHhcCCcccccHHHHhhccCCcHHHHHHHHHHHhhCchhhCCCCCceEEEEcCCCCcH--HHHHHHHHh
Confidence 4699999999998 689999999999999999999999999987743 13678999999987542 332221111
Q ss_pred CCccccccCCCCcchHHHHHHHHHHHh--CCCeEEEcCCCCCHHHHHHHHHH----HHHHcCCccEEEEcCcchhccCC-
Q psy2891 269 LDQHKLRTGRLSSDDWPRINDSIKKIN--KSQLYIDETPSLNVIELRANSRR----LSRQCGKIGVIIIDYLQLMSANS- 341 (452)
Q Consensus 269 i~~~~i~~g~l~~~~~~~~~~a~~~l~--~~~l~i~~~~~~t~~~i~~~i~~----~~~~~~~~~~vvID~l~~i~~~~- 341 (452)
.+.. +.-+.+.+ ... +..+|+....+ ++.+...+.+ +-.++ ++++||||++.......
T Consensus 160 ~~~r-------p~~~~~~~-----~~~Npgd~IFv~~~~d--~d~l~~iv~~qlPiL~~r~-~i~LVIiDSVAa~fR~E~ 224 (351)
T KOG1564|consen 160 LPQR-------PNPEKELN-----YNDNPGDHIFVENVHD--VDHLLHIVNRQLPILLNRK-KIKLVIIDSVAALFRSEF 224 (351)
T ss_pred cccC-------CCcchhhh-----hccCCCceEEEEeccc--hhhHHHHHhhhccceeccC-cceEEEEehhhHHHHHHh
Confidence 1111 00111100 011 23477765432 3333333322 22333 59999999998765321
Q ss_pred C-----CCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcch
Q psy2891 342 R-----GENRATEISEISRNLKGLAKEINCPILALSQLNRSL 378 (452)
Q Consensus 342 ~-----~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~ 378 (452)
. ...+...+..++..|+.+|.+++++|+++.|+....
T Consensus 225 d~~~Sdl~~r~~~l~rla~~Lr~LA~~~~~aVV~~NQVtd~~ 266 (351)
T KOG1564|consen 225 DYNPSDLKKRARHLFRLAGKLRQLASKFDLAVVCANQVTDRV 266 (351)
T ss_pred ccChhhhhhHHHHHHHHHHHHHHHHHhcCccEEEeecccccc
Confidence 1 123456688999999999999999999999998653
No 68
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=99.07 E-value=2.5e-09 Score=102.49 Aligned_cols=203 Identities=15% Similarity=0.224 Sum_probs=136.0
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDS 290 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a 290 (452)
-..|...+|-|.||+|||+|++.++..+. ...+|+|+|.-.+...+.+........++...+.+ .+.+.+
T Consensus 7 ~~~G~TLLIKG~PGTGKTtfaLelL~~l~--~~~~v~YISTRVd~d~vy~~y~~~~~~i~~~~vlD--atQd~~------ 76 (484)
T PF07088_consen 7 QEPGQTLLIKGEPGTGKTTFALELLNSLK--DHGNVMYISTRVDQDTVYEMYPWIEESIDPTNVLD--ATQDPF------ 76 (484)
T ss_pred CCCCcEEEEecCCCCCceeeehhhHHHHh--ccCCeEEEEeccCHHHHHHhhhhhccccChhhhhh--hccchh------
Confidence 56799999999999999999999998874 35789999999988888877754444444322221 111100
Q ss_pred HHHHhCCCeEE-EcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCC-CCCCHHHHHHHHHHHHHHHHHHhCCcE
Q psy2891 291 IKKINKSQLYI-DETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANS-RGENRATEISEISRNLKGLAKEINCPI 368 (452)
Q Consensus 291 ~~~l~~~~l~i-~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~-~~~~~~~~~~~i~~~Lk~lA~~~~i~v 368 (452)
..+... .......++.+...+.++.. .++..+|++|++..+-..- ...+..+.+..+...|-.+|++.++.+
T Consensus 77 -----~~~~~~~vp~~~l~~ds~~~f~~~i~~-~~k~~iI~~DSWdaiieyla~~~~~~ed~e~l~~dLv~lard~g~~L 150 (484)
T PF07088_consen 77 -----ELPLDKDVPFERLDIDSFRDFVDKINE-AGKKPIIAFDSWDAIIEYLAEEHDEPEDIETLTNDLVELARDMGINL 150 (484)
T ss_pred -----hccccccCcccccCHHHHHHHHHHhhh-cccCcEEEEecHHHHHHHhhhhhcCcHHHHHHHHHHHHHHhhcCceE
Confidence 011111 11123557788888876643 3457899999966554311 012223346677888889999999999
Q ss_pred EEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccccCCCCCCeEEEEEeeccCCCcceEEEEEEcCccc
Q psy2891 369 LALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQRNGPIGNIRLTFSGQYTK 448 (452)
Q Consensus 369 i~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~~~~~~~~l~i~KnR~G~~g~~~l~f~~~~~~ 448 (452)
|+++...+ ...+++.+|-|+.|+-..+ +..+-.+.|.+.|-|--+.+.-.+.|..+.+|
T Consensus 151 IlVsEsa~-----------------~~~LdYivDGVVTL~v~~d----erGR~~R~L~LeKLRGV~I~q~~Y~fTL~nGr 209 (484)
T PF07088_consen 151 ILVSESAE-----------------NEPLDYIVDGVVTLQVKND----ERGRTRRYLRLEKLRGVRIKQRLYPFTLANGR 209 (484)
T ss_pred EEEEecCC-----------------CCcchheeeeEEEEEeccc----cCCceEEEEEehhhcCcccCCccceEEeeCCE
Confidence 99986554 2358999999999943221 12244678999999977777655557777777
Q ss_pred ee
Q psy2891 449 FN 450 (452)
Q Consensus 449 f~ 450 (452)
|.
T Consensus 210 F~ 211 (484)
T PF07088_consen 210 FR 211 (484)
T ss_pred EE
Confidence 74
No 69
>PRK04296 thymidine kinase; Provisional
Probab=98.68 E-value=2.5e-07 Score=83.42 Aligned_cols=141 Identities=14% Similarity=0.148 Sum_probs=83.9
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKK 293 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~ 293 (452)
|.++++.|+||+|||+++++++.+++. .|.+|+++........-..++ +...|++...
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~-~g~~v~i~k~~~d~~~~~~~i-~~~lg~~~~~-------------------- 59 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEE-RGMKVLVFKPAIDDRYGEGKV-VSRIGLSREA-------------------- 59 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHH-cCCeEEEEeccccccccCCcE-ecCCCCcccc--------------------
Confidence 779999999999999999999999864 689999994321111111111 1111221110
Q ss_pred HhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEec
Q psy2891 294 INKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQ 373 (452)
Q Consensus 294 l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~q 373 (452)
+.+ ....++...++. .. +++++||||.+|.+.. .++ ..|-..++..+++|+++..
T Consensus 60 -----~~~-----~~~~~~~~~~~~--~~-~~~dvviIDEaq~l~~--------~~v----~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 60 -----IPV-----SSDTDIFELIEE--EG-EKIDCVLIDEAQFLDK--------EQV----VQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred -----eEe-----CChHHHHHHHHh--hC-CCCCEEEEEccccCCH--------HHH----HHHHHHHHHcCCeEEEEec
Confidence 111 223455554444 22 3589999999987632 112 2344555678999999864
Q ss_pred CCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecC
Q psy2891 374 LNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRD 410 (452)
Q Consensus 374 l~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~ 410 (452)
... ... .| +..+..+...||.|..|..-
T Consensus 115 ~~~-~~~----~~----f~~~~~L~~~aD~V~~l~~v 142 (190)
T PRK04296 115 DTD-FRG----EP----FEGSPYLLALADKVTELKAI 142 (190)
T ss_pred Ccc-ccc----Cc----CchHHHHHHhcCeEEEeeEE
Confidence 432 111 11 22345677789999988543
No 70
>PRK07773 replicative DNA helicase; Validated
Probab=98.66 E-value=2e-08 Score=110.62 Aligned_cols=63 Identities=40% Similarity=0.761 Sum_probs=56.1
Q ss_pred hhhhhchhhhhhceeEEEecCcccccCCCCCCeEEEEEeeccCCCcceEEEEEEcCccceecC
Q psy2891 390 DLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452 (452)
Q Consensus 390 dl~~S~~ie~~aD~vl~l~r~~~~~~~~~~~~~~~l~i~KnR~G~~g~~~l~f~~~~~~f~~~ 452 (452)
++--.+.|||+||+|++|||+++|+.+.+.+|.++|+|+|||+|++|++.+.|++++++|.++
T Consensus 821 g~~~hn~i~~dAD~v~~l~r~~~y~~~~~~~g~~e~ii~K~R~g~~g~~~~~~~~~~~~f~~~ 883 (886)
T PRK07773 821 GIIVHNSIEQDADVVILLYRPDYYDRDDPRGGEAEFIVAKHRNGPTGTVTLAFQLHLSRFANL 883 (886)
T ss_pred ceEecCceeccCCEEEEEechhhcCCCCCCCCceEEEEeccCCCCCceEEEEEecCcceeecc
Confidence 344467899999999999999999866666789999999999999999999999999999874
No 71
>KOG1433|consensus
Probab=98.61 E-value=3.5e-07 Score=87.64 Aligned_cols=163 Identities=18% Similarity=0.263 Sum_probs=99.5
Q ss_pred CccccccCccccccc-cCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHH--hCCC
Q psy2891 193 DVTGISTGFFELDKI-TSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGS--VGKL 269 (452)
Q Consensus 193 ~~~~i~tg~~~LD~~-~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~--~~~i 269 (452)
...-++||...||++ .||+.-|.++.|.|+||+|||.|++.++... ......|+|+..|-. .+ .+|.... ..+.
T Consensus 89 ~~~~l~Tg~~~lD~lL~gGi~~g~~TEi~G~p~~GKtQlc~~~~v~~-~gge~~~l~IDs~s~-~~-~~~~~~ia~~~~~ 165 (326)
T KOG1433|consen 89 ELGFLSTGSKALDKLLGGGIETGSLTELVGPPGSGKTQLCHTLAVTC-GGGEGKVLYIDTEST-FR-LERLTEIAGRSGL 165 (326)
T ss_pred cceeeccchhhhhHhhccCcccCceeEEecCCCccHHHHHHHHHHhc-cCCcceEEEEecchh-cc-cchhhhhhhhhhh
Confidence 445799999999998 6899999999999999999999998887764 223568999999864 11 1222111 0111
Q ss_pred CccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCC-C----CC
Q psy2891 270 DQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANS-R----GE 344 (452)
Q Consensus 270 ~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~-~----~~ 344 (452)
...+ -..++.-+.. +-.+ -+...+ ..+..+..+. +..++++|+........ . ..
T Consensus 166 ~~~~---------~~~~l~~~~~-------~~~~---~~l~~~-~~a~~~~~~~-~~~l~~vds~ta~~~~~~~g~~~~~ 224 (326)
T KOG1433|consen 166 RGRD---------TLSNLMLARA-------YNLD---HQLQLI-QEAEIMINQS-RVKLLIVDSATALYRTTFKGRGELS 224 (326)
T ss_pred hhHH---------HHHHHHHHHH-------HhhH---HHHHHH-HHHHHHhhcc-ceeEEEecccccccccccccccchH
Confidence 1110 0001111100 0000 001111 1122222333 47899999988765432 1 11
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchh
Q psy2891 345 NRATEISEISRNLKGLAKEINCPILALSQLNRSLE 379 (452)
Q Consensus 345 ~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~ 379 (452)
.+..-.....+.|+.++++++++||+.+|+.+...
T Consensus 225 a~~~~~~~~~~~l~~la~~~g~~vvitn~v~~~~d 259 (326)
T KOG1433|consen 225 ARQMLLAKFLRSLKKLADEFGVAVVITNQVTAQVD 259 (326)
T ss_pred HHHHHHHHHHHHHHHHHHhcCceEEEecccccccc
Confidence 22233567788999999999999999999987653
No 72
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.49 E-value=5.6e-07 Score=75.69 Aligned_cols=118 Identities=19% Similarity=0.247 Sum_probs=78.3
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHh----CCCcEEEEeCCC--CHHHHHHHHHHHhCCCCccccccCCCCcchHH
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIE----NKLPVAIFSMEM--SGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWP 285 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~----~g~~vl~~s~E~--~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~ 285 (452)
+.+.+++|.|+||+|||+++.+++...... ...+++|+++.. +...+...+.... +.+.
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~~~-------------- 66 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEAL-GLPL-------------- 66 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHH-T-SS--------------
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHh-Cccc--------------
Confidence 346789999999999999999999987532 146788775542 3344544444321 1111
Q ss_pred HHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhC
Q psy2891 286 RINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEIN 365 (452)
Q Consensus 286 ~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~ 365 (452)
....+..++.+.+.+....++ ..+||||.++.+. . ...+..|+.++.+.+
T Consensus 67 ------------------~~~~~~~~l~~~~~~~l~~~~-~~~lviDe~~~l~-~----------~~~l~~l~~l~~~~~ 116 (131)
T PF13401_consen 67 ------------------KSRQTSDELRSLLIDALDRRR-VVLLVIDEADHLF-S----------DEFLEFLRSLLNESN 116 (131)
T ss_dssp ------------------SSTS-HHHHHHHHHHHHHHCT-EEEEEEETTHHHH-T----------HHHHHHHHHHTCSCB
T ss_pred ------------------cccCCHHHHHHHHHHHHHhcC-CeEEEEeChHhcC-C----------HHHHHHHHHHHhCCC
Confidence 013456777777777777765 6799999999975 1 356778888888999
Q ss_pred CcEEEEecC
Q psy2891 366 CPILALSQL 374 (452)
Q Consensus 366 i~vi~l~ql 374 (452)
+++|++.+.
T Consensus 117 ~~vvl~G~~ 125 (131)
T PF13401_consen 117 IKVVLVGTP 125 (131)
T ss_dssp EEEEEEESS
T ss_pred CeEEEEECh
Confidence 999999875
No 73
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.48 E-value=2.4e-06 Score=79.03 Aligned_cols=180 Identities=16% Similarity=0.193 Sum_probs=106.8
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhC---------------CCcEEEEeC----CCCHHHHHHHH
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIEN---------------KLPVAIFSM----EMSGIQLAMRM 262 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~---------------g~~vl~~s~----E~~~~~i~~R~ 262 (452)
+.|+.+.-.+.+|+++.|.||.|+|||||..-++--.--.. +.++.|+.- +-+-.--+.++
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~ 97 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDV 97 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHH
Confidence 46777766799999999999999999999987765221001 135666522 11111122233
Q ss_pred HHHhCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHH-HHHHHHcCCccEEEEcCcchhccCC
Q psy2891 263 LGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANS-RRLSRQCGKIGVIIIDYLQLMSANS 341 (452)
Q Consensus 263 ~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i-~~~~~~~~~~~~vvID~l~~i~~~~ 341 (452)
+.. .......+ -+.++..+++++.++.+.+.-..+.-..-..+|=.+....+ .+.... +++++++|--..
T Consensus 98 V~~-g~~~~~g~-~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~--~p~lllLDEP~~----- 168 (254)
T COG1121 98 VLL-GRYGKKGW-FRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQ--NPDLLLLDEPFT----- 168 (254)
T ss_pred HHc-cCcccccc-cccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhcc--CCCEEEecCCcc-----
Confidence 321 11111111 12356677888888887764222222223345555554432 222222 599999998421
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcc
Q psy2891 342 RGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEV 412 (452)
Q Consensus 342 ~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~ 412 (452)
+-+. .....+++-|+.+.++ |++|++++|= -+...+.+|.|+.|.|.-.
T Consensus 169 -gvD~-~~~~~i~~lL~~l~~e-g~tIl~vtHD-------------------L~~v~~~~D~vi~Ln~~~~ 217 (254)
T COG1121 169 -GVDV-AGQKEIYDLLKELRQE-GKTVLMVTHD-------------------LGLVMAYFDRVICLNRHLI 217 (254)
T ss_pred -cCCH-HHHHHHHHHHHHHHHC-CCEEEEEeCC-------------------cHHhHhhCCEEEEEcCeeE
Confidence 1121 2235788889999999 9999999982 1346778999999988643
No 74
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.47 E-value=2.6e-06 Score=74.76 Aligned_cols=157 Identities=21% Similarity=0.314 Sum_probs=92.5
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC---CHHHHHHHHHHHhC-------CCCcc
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM---SGIQLAMRMLGSVG-------KLDQH 272 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~---~~~~i~~R~~a~~~-------~i~~~ 272 (452)
-||.+.--+++|.++-+.||.|+||||++.-++.-... ....|.+=..|+ +..+++.+ ++.+- .+..+
T Consensus 16 vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~-d~G~i~i~g~~~~~~~s~~LAk~-lSILkQ~N~i~~rlTV~ 93 (252)
T COG4604 16 VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKK-DSGEITIDGLELTSTPSKELAKK-LSILKQENHINSRLTVR 93 (252)
T ss_pred eeccceeeecCCceeEEECCCCccHHHHHHHHHHhccc-cCceEEEeeeecccCChHHHHHH-HHHHHhhchhhheeEHH
Confidence 35555456899999999999999999987755554432 223354444443 23344444 33321 11111
Q ss_pred c--------cccCCCCcchHHHHHHHHHHHhCCCe---EEEcCCCCCHHHH-HHHHHHHHHHcCCccEEEEcCcchhccC
Q psy2891 273 K--------LRTGRLSSDDWPRINDSIKKINKSQL---YIDETPSLNVIEL-RANSRRLSRQCGKIGVIIIDYLQLMSAN 340 (452)
Q Consensus 273 ~--------i~~g~l~~~~~~~~~~a~~~l~~~~l---~i~~~~~~t~~~i-~~~i~~~~~~~~~~~~vvID~l~~i~~~ 340 (452)
. .-.|.++.++|..+.+|++.+.-.++ |++. +|-.+- ++.+ .+.-.. ..+.|++|. +
T Consensus 94 dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~---LSGGQrQRAfI-AMVlaQ-dTdyvlLDE------P 162 (252)
T COG4604 94 DLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDE---LSGGQRQRAFI-AMVLAQ-DTDYVLLDE------P 162 (252)
T ss_pred HHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHh---cccchhhhhhh-heeeec-cCcEEEecC------c
Confidence 1 12478999999999999988753322 2222 121222 2222 222223 378888886 2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEec
Q psy2891 341 SRGENRATEISEISRNLKGLAKEINCPILALSQ 373 (452)
Q Consensus 341 ~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~q 373 (452)
-.+-+-.. -.++++.|+++|.|+|-+|+++-|
T Consensus 163 LNNLDmkH-sv~iMk~Lrrla~el~KtiviVlH 194 (252)
T COG4604 163 LNNLDMKH-SVQIMKILRRLADELGKTIVVVLH 194 (252)
T ss_pred ccccchHH-HHHHHHHHHHHHHHhCCeEEEEEe
Confidence 21222222 347899999999999988777654
No 75
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=98.42 E-value=1.7e-06 Score=76.20 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=34.1
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCH-HHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSG-IQLAMRML 263 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~-~~i~~R~~ 263 (452)
+++|.|+||+|||+||.+++.. .+.+++|++.+.+. .++..|+.
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~----~~~~~~y~at~~~~d~em~~rI~ 45 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE----LGGPVTYIATAEAFDDEMAERIA 45 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh----cCCCeEEEEccCcCCHHHHHHHH
Confidence 4789999999999999999864 46799999887664 33455543
No 76
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.41 E-value=6.7e-06 Score=76.54 Aligned_cols=181 Identities=16% Similarity=0.171 Sum_probs=104.4
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC----CCCHHHHHHHHHHHhC-------CCC
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM----EMSGIQLAMRMLGSVG-------KLD 270 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~----E~~~~~i~~R~~a~~~-------~i~ 270 (452)
+-|+.+.-.+++|+++.|.||.|+||||++..++.-..-. ...+++.. +++..+++.++ +... ++.
T Consensus 16 ~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~--~G~V~l~g~~i~~~~~kelAk~i-a~vpQ~~~~~~~~t 92 (258)
T COG1120 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK--SGEVLLDGKDIASLSPKELAKKL-AYVPQSPSAPFGLT 92 (258)
T ss_pred eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC--CCEEEECCCchhhcCHHHHhhhE-EEeccCCCCCCCcE
Confidence 3456664568999999999999999999999888755322 22344433 34445555443 2111 111
Q ss_pred cccc-cc---------CCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHH-HHHHHHHHHcCCccEEEEcCcchhcc
Q psy2891 271 QHKL-RT---------GRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELR-ANSRRLSRQCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 271 ~~~i-~~---------g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~-~~i~~~~~~~~~~~~vvID~l~~i~~ 339 (452)
...+ .- +..+++|.+.+.++.+.+.-..+.-..-..+|=.+-. ..+.+...+ +++++++|.-+..
T Consensus 93 V~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ--~~~iLLLDEPTs~-- 168 (258)
T COG1120 93 VYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQ--ETPILLLDEPTSH-- 168 (258)
T ss_pred EeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhc--CCCEEEeCCCccc--
Confidence 1110 00 1346667777777766653222111111223333322 223233333 4999999985432
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCccc
Q psy2891 340 NSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVY 413 (452)
Q Consensus 340 ~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~ 413 (452)
-+-..+ -++++-+++++++.|.+||++.|-- ..-...||.+++|...+.+
T Consensus 169 ----LDi~~Q-~evl~ll~~l~~~~~~tvv~vlHDl-------------------N~A~ryad~~i~lk~G~i~ 218 (258)
T COG1120 169 ----LDIAHQ-IEVLELLRDLNREKGLTVVMVLHDL-------------------NLAARYADHLILLKDGKIV 218 (258)
T ss_pred ----cCHHHH-HHHHHHHHHHHHhcCCEEEEEecCH-------------------HHHHHhCCEEEEEECCeEE
Confidence 222223 4789999999999999888776621 1234578999999865543
No 77
>PF13479 AAA_24: AAA domain
Probab=98.37 E-value=5.3e-06 Score=76.22 Aligned_cols=148 Identities=14% Similarity=0.165 Sum_probs=87.2
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHHHH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKI 294 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l 294 (452)
--++|.|+||+|||+|+..+ .+++|+++|-....+.... +.+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~---------~k~l~id~E~g~~~~~~~~-----~~~------------------------ 45 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL---------PKPLFIDTENGSDSLKFLD-----DGD------------------------ 45 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC---------CCeEEEEeCCCccchhhhc-----CCC------------------------
Confidence 35899999999999999876 5799999998743221110 000
Q ss_pred hCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhcc------C-------CC--C---CCHHHHHHH-HHH
Q psy2891 295 NKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSA------N-------SR--G---ENRATEISE-ISR 355 (452)
Q Consensus 295 ~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~------~-------~~--~---~~~~~~~~~-i~~ 355 (452)
.+.| .+++++.+.+..+.......+.||||+++.+.. . .+ . ...+..+.. +.+
T Consensus 46 ---~i~i-----~s~~~~~~~~~~l~~~~~~y~tiVIDsis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~ 117 (213)
T PF13479_consen 46 ---VIPI-----TSWEDFLEALDELEEDEADYDTIVIDSISWLEDMCLEYICRQNKKKIKRSGDPDYGKGYGELQQEFMR 117 (213)
T ss_pred ---eeCc-----CCHHHHHHHHHHHHhccCCCCEEEEECHHHHHHHHHHHHhhhhcccccccCCCcccchHHHHHHHHHH
Confidence 0111 156666666655433322488888888876421 0 00 1 123444433 333
Q ss_pred HHHHHHHHhCCcEEEEecCCcchh-hc---CCCCCCchhhhhhchhhhhhceeEEEec
Q psy2891 356 NLKGLAKEINCPILALSQLNRSLE-QR---QNKRPIMSDLRESGAIEQDADVILFIYR 409 (452)
Q Consensus 356 ~Lk~lA~~~~i~vi~l~ql~r~~~-~r---~~~~p~l~dl~~S~~ie~~aD~vl~l~r 409 (452)
.++.+....++.||+++|...... .. .--+|.+.. +-...+...+|+|..+..
T Consensus 118 ~i~~l~~~~~~~VI~tah~~~~~~~~~~~~~~~~~~l~~-k~~~~l~~~~D~V~~l~~ 174 (213)
T PF13479_consen 118 FIDKLLNALGKNVIFTAHAKEEEDEDGGKYTRYKPKLGK-KVRNELPGWFDVVGRLRV 174 (213)
T ss_pred HHHHHHHHCCCcEEEEEEEEEEEcCCCCceeEEeeccCh-hHHhhhhecccEEEEEEE
Confidence 344455568999999999865433 11 112344433 345678899999977764
No 78
>PRK10867 signal recognition particle protein; Provisional
Probab=98.36 E-value=5.5e-05 Score=76.26 Aligned_cols=58 Identities=16% Similarity=0.193 Sum_probs=43.7
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH--HHHhCCCCc
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRM--LGSVGKLDQ 271 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~--~a~~~~i~~ 271 (452)
..+++++|+||+||||++..+|..++.+.|.+|++++++.-......++ ++...|++.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v 159 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPV 159 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeE
Confidence 4699999999999999999999998753389999999996544433333 344455554
No 79
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.35 E-value=0.0002 Score=70.19 Aligned_cols=42 Identities=19% Similarity=0.370 Sum_probs=37.0
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM 253 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~ 253 (452)
+.+|.++++.|++|+||||++..+|..+. .+|.+|.+++.+-
T Consensus 203 ~~~~~ii~lvGptGvGKTTt~akLA~~l~-~~g~~V~lItaDt 244 (407)
T PRK12726 203 LSNHRIISLIGQTGVGKTTTLVKLGWQLL-KQNRTVGFITTDT 244 (407)
T ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEeCCc
Confidence 45788999999999999999999998875 4789999999873
No 80
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.33 E-value=5.4e-06 Score=75.82 Aligned_cols=149 Identities=21% Similarity=0.157 Sum_probs=82.4
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHHHH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKI 294 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l 294 (452)
.+++|+|+||+|||++|.+++ .++++++.+.+...+.. ...++.
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~--------~~~~~~~~d~~~~~l~g-----~~~~~v----------------------- 56 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLP--------GKTLVLSFDMSSKVLIG-----DENVDI----------------------- 56 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcC--------CCCEEEeccccchhccC-----CCCCce-----------------------
Confidence 479999999999999998762 35788888886443210 001111
Q ss_pred hCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhcc------CC---C---CCCHHHHH-HHHHHHHHHHH
Q psy2891 295 NKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSA------NS---R---GENRATEI-SEISRNLKGLA 361 (452)
Q Consensus 295 ~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~------~~---~---~~~~~~~~-~~i~~~Lk~lA 361 (452)
+.-.+..+++.+...+..+...-.+++.||||+++.+.. .. . ....+..+ ..+.+.|+.|
T Consensus 57 ------~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDsI~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L- 129 (220)
T TIGR01618 57 ------ADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDNISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVL- 129 (220)
T ss_pred ------eecCCCCCHHHHHHHHHHHHhccccCCEEEEecHHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHH-
Confidence 000122334455554443332212488999999887654 11 1 11122222 2344555555
Q ss_pred HHhCCcEEEEecCCcchhhcC------CCCCCchhhhh--hchhhhhhceeEEEec
Q psy2891 362 KEINCPILALSQLNRSLEQRQ------NKRPIMSDLRE--SGAIEQDADVILFIYR 409 (452)
Q Consensus 362 ~~~~i~vi~l~ql~r~~~~r~------~~~p~l~dl~~--S~~ie~~aD~vl~l~r 409 (452)
++++..||+++|..-.....+ .-.| ++++ ...+...+|+|..+.-
T Consensus 130 ~~~g~nII~tAhe~~~~~~de~G~~~~r~~P---~i~~K~~n~l~G~~DvV~rl~i 182 (220)
T TIGR01618 130 KESNKNIYATAWELTNQSSGESGQIYNRYQP---DIREKVLNAFLGLTDVVGRIVL 182 (220)
T ss_pred HhCCCcEEEEEeeccccccCCCCCCcceech---hhhhhHHHhhcccccEEEEEEE
Confidence 349999999999843211111 1123 3332 2346678999998764
No 81
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.28 E-value=4.8e-06 Score=70.08 Aligned_cols=125 Identities=20% Similarity=0.198 Sum_probs=71.5
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHH
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIK 292 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~ 292 (452)
++..++|.|+||+|||+++..++..... .+..++|++.+.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 52 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGP-PGGGVIYIDGEDILEEVLDQLLLI--------------------------- 52 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCC-CCCCEEEECCEEccccCHHHHHhh---------------------------
Confidence 3568999999999999999999988753 334799999997765444332200
Q ss_pred HHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEe
Q psy2891 293 KINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALS 372 (452)
Q Consensus 293 ~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ 372 (452)
..............+. .+....... ++++|+||.+..+.... .............+.......++.+|+++
T Consensus 53 -----~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~viiiDei~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 123 (148)
T smart00382 53 -----IVGGKKASGSGELRLR-LALALARKL-KPDVLILDEITSLLDAE--QEALLLLLEELRLLLLLKSEKNLTVILTT 123 (148)
T ss_pred -----hhhccCCCCCHHHHHH-HHHHHHHhc-CCCEEEEECCcccCCHH--HHHHHHhhhhhHHHHHHHhcCCCEEEEEe
Confidence 0000001111222333 222333333 37999999998776532 00000000002234555566788888888
Q ss_pred cC
Q psy2891 373 QL 374 (452)
Q Consensus 373 ql 374 (452)
+.
T Consensus 124 ~~ 125 (148)
T smart00382 124 ND 125 (148)
T ss_pred CC
Confidence 75
No 82
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.24 E-value=0.00013 Score=73.66 Aligned_cols=145 Identities=14% Similarity=0.165 Sum_probs=77.7
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH--HHHhCCCCccccccCCCCcchHHHHHHHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRM--LGSVGKLDQHKLRTGRLSSDDWPRINDSI 291 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~--~a~~~~i~~~~i~~g~l~~~~~~~~~~a~ 291 (452)
..+++++|+||+||||++.++|..+..+.|.+|++++++.-.......+ ++...+++......+ -++.+. ..++.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~-~~P~~i--~~~al 175 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKG-QSPVEI--ARRAL 175 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCC-CCHHHH--HHHHH
Confidence 3599999999999999999999997544689999999996543332222 234456654332211 112121 22334
Q ss_pred HHH--hCCCeEEEcCCCCC-H-HHHHHHHHHHHHHcC-CccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCC
Q psy2891 292 KKI--NKSQLYIDETPSLN-V-IELRANSRRLSRQCG-KIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINC 366 (452)
Q Consensus 292 ~~l--~~~~l~i~~~~~~t-~-~~i~~~i~~~~~~~~-~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i 366 (452)
+.. .+..+.|.|+++.. . +.+...+.++..... .--++|+|... . + ...+..+.+....++
T Consensus 176 ~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~t---------g--q---~~~~~a~~f~~~v~i 241 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMT---------G--Q---DAVNTAKTFNERLGL 241 (428)
T ss_pred HHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccc---------h--H---HHHHHHHHHHhhCCC
Confidence 333 22345555555422 1 234444444433222 12366677520 0 1 112223444445577
Q ss_pred cEEEEecCC
Q psy2891 367 PILALSQLN 375 (452)
Q Consensus 367 ~vi~l~ql~ 375 (452)
.-+++.-+.
T Consensus 242 ~giIlTKlD 250 (428)
T TIGR00959 242 TGVVLTKLD 250 (428)
T ss_pred CEEEEeCcc
Confidence 777776554
No 83
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.20 E-value=4e-05 Score=69.22 Aligned_cols=38 Identities=21% Similarity=0.361 Sum_probs=32.9
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS 254 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~ 254 (452)
++++.|++|+||||.+..+|.+...+ +.+|.++|++--
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~ 40 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTY 40 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTS
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCC
Confidence 78999999999999999999999765 999999999854
No 84
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.13 E-value=4.1e-05 Score=73.78 Aligned_cols=178 Identities=18% Similarity=0.195 Sum_probs=98.9
Q ss_pred ccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCH--HHHHHHHHHHhCCCCccccccCC
Q psy2891 201 FFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSG--IQLAMRMLGSVGKLDQHKLRTGR 278 (452)
Q Consensus 201 ~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~--~~i~~R~~a~~~~i~~~~i~~g~ 278 (452)
...|+.+..-+++|+++.+.|++|+||||+..-++--..- ....|.+....... .++..++ +.. +.....-..
T Consensus 18 ~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p-~~G~i~i~G~~~~~~~~~~~~~i-gy~---~~~~~~~~~ 92 (293)
T COG1131 18 KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP-TSGEILVLGYDVVKEPAKVRRRI-GYV---PQEPSLYPE 92 (293)
T ss_pred CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEEcCEeCccCHHHHHhhe-EEE---ccCCCCCcc
Confidence 4577777667999999999999999999998877765422 23344444333322 2233332 111 110000011
Q ss_pred CCc----------------chHHHHHHHHHHHhCCCeEEE-cCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCC
Q psy2891 279 LSS----------------DDWPRINDSIKKINKSQLYID-ETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANS 341 (452)
Q Consensus 279 l~~----------------~~~~~~~~a~~~l~~~~l~i~-~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~ 341 (452)
++- ...+++.+.++.+.-.. .-. ....+|...-+...-...--+ +|+++|+|--..
T Consensus 93 lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~lS~G~kqrl~ia~aL~~-~P~lliLDEPt~----- 165 (293)
T COG1131 93 LTVRENLEFFARLYGLSKEEAEERIEELLELFGLED-KANKKVRTLSGGMKQRLSIALALLH-DPELLILDEPTS----- 165 (293)
T ss_pred ccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch-hhCcchhhcCHHHHHHHHHHHHHhc-CCCEEEECCCCc-----
Confidence 111 11223333333332111 001 022345443333222222233 599999998431
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCc
Q psy2891 342 RGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDE 411 (452)
Q Consensus 342 ~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~ 411 (452)
+-+. .....+.+.|+.++++.+.+|++.+|.-. .+++.||.|+++++-.
T Consensus 166 -GLDp-~~~~~~~~~l~~l~~~g~~tvlissH~l~-------------------e~~~~~d~v~il~~G~ 214 (293)
T COG1131 166 -GLDP-ESRREIWELLRELAKEGGVTILLSTHILE-------------------EAEELCDRVIILNDGK 214 (293)
T ss_pred -CCCH-HHHHHHHHHHHHHHhCCCcEEEEeCCcHH-------------------HHHHhCCEEEEEeCCE
Confidence 2222 23457888999999998899999999754 3677799999987654
No 85
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.12 E-value=5.8e-05 Score=75.07 Aligned_cols=43 Identities=12% Similarity=0.231 Sum_probs=37.4
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM 253 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~ 253 (452)
..++.++++.|++|+||||++.++|.......|.+|++++++-
T Consensus 220 ~~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 220 KNQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 4467799999999999999999999877556789999999885
No 86
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.09 E-value=0.0001 Score=69.89 Aligned_cols=117 Identities=23% Similarity=0.312 Sum_probs=76.6
Q ss_pred EEEEeCCCCChhHHHHHHHHHHHHh-----CCCcEEEEeCCC--CHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHH
Q psy2891 217 IIVAGRPSMGKTAFSLNIGEHIAIE-----NKLPVAIFSMEM--SGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRIND 289 (452)
Q Consensus 217 ~~i~g~pg~GKT~~~l~ia~~~a~~-----~g~~vl~~s~E~--~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~ 289 (452)
.+|.|++|.|||+++..++..--.. ...||+++..=- +...+...++.. .|++.
T Consensus 64 lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~-lgaP~------------------ 124 (302)
T PF05621_consen 64 LLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEA-LGAPY------------------ 124 (302)
T ss_pred eEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHH-hCccc------------------
Confidence 7899999999999988877533211 123666654311 112222222211 11111
Q ss_pred HHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEE
Q psy2891 290 SIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPIL 369 (452)
Q Consensus 290 a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi 369 (452)
.+.-+...+...+..+.+..| ++++|||-++.+-.+. ..+..+++..||.|+.++++|+|
T Consensus 125 --------------~~~~~~~~~~~~~~~llr~~~-vrmLIIDE~H~lLaGs-----~~~qr~~Ln~LK~L~NeL~ipiV 184 (302)
T PF05621_consen 125 --------------RPRDRVAKLEQQVLRLLRRLG-VRMLIIDEFHNLLAGS-----YRKQREFLNALKFLGNELQIPIV 184 (302)
T ss_pred --------------CCCCCHHHHHHHHHHHHHHcC-CcEEEeechHHHhccc-----HHHHHHHHHHHHHHhhccCCCeE
Confidence 223355677777777777776 9999999999876542 22356889999999999999999
Q ss_pred EEe
Q psy2891 370 ALS 372 (452)
Q Consensus 370 ~l~ 372 (452)
++.
T Consensus 185 ~vG 187 (302)
T PF05621_consen 185 GVG 187 (302)
T ss_pred Eec
Confidence 885
No 87
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.08 E-value=0.00038 Score=69.87 Aligned_cols=57 Identities=9% Similarity=0.082 Sum_probs=41.4
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHH--HHHHHhCCCCcc
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAM--RMLGSVGKLDQH 272 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~--R~~a~~~~i~~~ 272 (452)
.++.++|++|+||||++..+|..+. +.|.+|+.++++--..--.. |.++...+++..
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~-~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~ 159 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQ-RKGFKPCLVCADTFRAGAFDQLKQNATKARIPFY 159 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-HCCCCEEEEcCcccchhHHHHHHHHhhccCCeEE
Confidence 5899999999999999999999875 57899999999853322222 223444555543
No 88
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.07 E-value=0.00068 Score=68.61 Aligned_cols=146 Identities=12% Similarity=0.148 Sum_probs=82.5
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHH--HHHHHhCCCCccccccCCCCcchHHHHHHH
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAM--RMLGSVGKLDQHKLRTGRLSSDDWPRINDS 290 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~--R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a 290 (452)
+..+++++|+||+||||++..+|..+. +.|++|++++++--...... +.++...+++...... ..+-...+.++
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~-~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~---~~d~~~i~~~a 169 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK-KKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPD---NKDAVEIAKEG 169 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCC---ccCHHHHHHHH
Confidence 345899999999999999999998876 47899999999864332222 2234445665431110 11112334556
Q ss_pred HHHHhCCCeEEEcCCCCC--HHHHHHHHHHHHHHcC-CccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCc
Q psy2891 291 IKKINKSQLYIDETPSLN--VIELRANSRRLSRQCG-KIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCP 367 (452)
Q Consensus 291 ~~~l~~~~l~i~~~~~~t--~~~i~~~i~~~~~~~~-~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~ 367 (452)
.+.+....+.|.|+++.. -+.+.+.++.+..... ..-++|+|.-. . + ......+.+.+..++.
T Consensus 170 l~~~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~---------g--q---~av~~a~~F~~~l~i~ 235 (437)
T PRK00771 170 LEKFKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATI---------G--Q---QAKNQAKAFHEAVGIG 235 (437)
T ss_pred HHHhhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccc---------c--H---HHHHHHHHHHhcCCCC
Confidence 666655577776665322 2344444444433221 24577777622 1 1 1122334444456666
Q ss_pred EEEEecCCc
Q psy2891 368 ILALSQLNR 376 (452)
Q Consensus 368 vi~l~ql~r 376 (452)
.++++.+..
T Consensus 236 gvIlTKlD~ 244 (437)
T PRK00771 236 GIIITKLDG 244 (437)
T ss_pred EEEEecccC
Confidence 677766643
No 89
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.06 E-value=4.9e-05 Score=69.36 Aligned_cols=177 Identities=15% Similarity=0.151 Sum_probs=91.4
Q ss_pred ccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC---CCCHHHHHHHHHHHhCCCCccc--cc
Q psy2891 201 FFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM---EMSGIQLAMRMLGSVGKLDQHK--LR 275 (452)
Q Consensus 201 ~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~---E~~~~~i~~R~~a~~~~i~~~~--i~ 275 (452)
...|+.+.--+.+|+++.|.||+|+|||||+.-++.-. .-.+..|.+... .++..+.. .+-....|+=+.. +.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld-~pt~G~v~i~g~d~~~l~~~~~~-~~R~~~iGfvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD-KPTSGEVLINGKDLTKLSEKELA-KLRRKKIGFVFQNFNLL 95 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCceEEECCEEcCcCCHHHHH-HHHHHhEEEECccCCCC
Confidence 55677765569999999999999999999876555432 222333444321 23332221 1111112211110 00
Q ss_pred ---------------cCCCCcchHHHHHHHHHHHhCCCeEEEc-CCCCCHHHH--HHHHHHHHHHcCCccEEEEcCcchh
Q psy2891 276 ---------------TGRLSSDDWPRINDSIKKINKSQLYIDE-TPSLNVIEL--RANSRRLSRQCGKIGVIIIDYLQLM 337 (452)
Q Consensus 276 ---------------~g~l~~~~~~~~~~a~~~l~~~~l~i~~-~~~~t~~~i--~~~i~~~~~~~~~~~~vvID~l~~i 337 (452)
.+........+.....+.+.-....... ...+|-.+= .+.+|.+. + +|++|+-|--+-
T Consensus 96 ~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~--~-~P~iilADEPTg- 171 (226)
T COG1136 96 PDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALI--N-NPKIILADEPTG- 171 (226)
T ss_pred CCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHh--c-CCCeEEeeCccc-
Confidence 0111001111111212221111111111 224453332 23344443 2 499999998431
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEec
Q psy2891 338 SANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYR 409 (452)
Q Consensus 338 ~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r 409 (452)
+- ....-..++.-|+.++++.|.+||++.|=. .+...||.++.+..
T Consensus 172 -----nL-D~~t~~~V~~ll~~~~~~~g~tii~VTHd~--------------------~lA~~~dr~i~l~d 217 (226)
T COG1136 172 -----NL-DSKTAKEVLELLRELNKERGKTIIMVTHDP--------------------ELAKYADRVIELKD 217 (226)
T ss_pred -----cC-ChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--------------------HHHHhCCEEEEEeC
Confidence 11 112235788899999999999999999843 25667899888853
No 90
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.05 E-value=0.00017 Score=63.93 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=37.2
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRM 262 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~ 262 (452)
++++.|+||+|||+++.+++..++. .|.+|++++++.-......++
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~-~g~~v~~i~~D~~~~~~~~~l 47 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK-KGKKVLLVAADTYRPAAIEQL 47 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCcEEEEEcCCCChHHHHHH
Confidence 6789999999999999999998874 688999999986543333333
No 91
>PRK08181 transposase; Validated
Probab=98.05 E-value=6.4e-05 Score=71.20 Aligned_cols=46 Identities=24% Similarity=0.383 Sum_probs=37.3
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRM 262 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~ 262 (452)
.++.-++|.|+||+|||.|+..++..++ +.|.+|+|++. .++...+
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~Aia~~a~-~~g~~v~f~~~----~~L~~~l 149 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAAAIGLALI-ENGWRVLFTRT----TDLVQKL 149 (269)
T ss_pred hcCceEEEEecCCCcHHHHHHHHHHHHH-HcCCceeeeeH----HHHHHHH
Confidence 3556799999999999999999999886 47999999975 3455554
No 92
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.04 E-value=8.2e-05 Score=67.78 Aligned_cols=178 Identities=16% Similarity=0.168 Sum_probs=100.9
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC-CCCHHH---HHHHHHHHhCCCCcccc---
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM-EMSGIQ---LAMRMLGSVGKLDQHKL--- 274 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~-E~~~~~---i~~R~~a~~~~i~~~~i--- 274 (452)
+.|+.+---+.+|+...|.|++|+||||++.-++--.. ....-++|.. +..+.. ...|.+.....-+...+
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~ 98 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPR 98 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCcccCccccchhhccceeEEecCCccccCcc
Confidence 45666644589999999999999999999998776432 2233444444 322211 11121111111111110
Q ss_pred -----------ccCCCCcchHHHHHHHHHHHhCCCeEEEc-CCCCCHHHHHH--HHHHHHHHcCCccEEEEcCcchhccC
Q psy2891 275 -----------RTGRLSSDDWPRINDSIKKINKSQLYIDE-TPSLNVIELRA--NSRRLSRQCGKIGVIIIDYLQLMSAN 340 (452)
Q Consensus 275 -----------~~g~l~~~~~~~~~~a~~~l~~~~l~i~~-~~~~t~~~i~~--~i~~~~~~~~~~~~vvID~l~~i~~~ 340 (452)
..+.+++.+ .++.++.+.+.=.+-|... ...+|=.+... .+|.+.. +|+++|.|-....-.
T Consensus 99 ~tv~~~l~Epl~~~~~~~~~-~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~---~PklLIlDEptSaLD- 173 (252)
T COG1124 99 RTVGRILSEPLRPHGLSKSQ-QRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIP---EPKLLILDEPTSALD- 173 (252)
T ss_pred hhHHHHHhhhhccCCccHHH-HHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhcc---CCCEEEecCchhhhc-
Confidence 111222222 2234443333212222222 22345445443 3333322 599999998654332
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCc
Q psy2891 341 SRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDE 411 (452)
Q Consensus 341 ~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~ 411 (452)
..-.+++.+-|..+.+++|.+.++++|= .+.+++.||.++.+++..
T Consensus 174 ------~siQa~IlnlL~~l~~~~~lt~l~IsHd-------------------l~~v~~~cdRi~Vm~~G~ 219 (252)
T COG1124 174 ------VSVQAQILNLLLELKKERGLTYLFISHD-------------------LALVEHMCDRIAVMDNGQ 219 (252)
T ss_pred ------HHHHHHHHHHHHHHHHhcCceEEEEeCc-------------------HHHHHHHhhheeeeeCCe
Confidence 1234688899999999999999999982 236899999999997754
No 93
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.04 E-value=6.1e-05 Score=66.41 Aligned_cols=152 Identities=18% Similarity=0.216 Sum_probs=80.3
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC-CHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHHH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM-SGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKK 293 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~-~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~ 293 (452)
..++|.|+||+|||+||.+++... +.+++|++... ..+++..|+...... . +
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~----~~~~~~iat~~~~~~e~~~ri~~h~~~-------R----~------------ 54 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS----GLQVLYIATAQPFDDEMAARIAHHRQR-------R----P------------ 54 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc----CCCcEeCcCCCCChHHHHHHHHHHHhc-------C----C------------
Confidence 468999999999999999997643 45788887654 345566665432110 0 0
Q ss_pred HhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEec
Q psy2891 294 INKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQ 373 (452)
Q Consensus 294 l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~q 373 (452)
..+..... ...+.++ +... .. +.++|+||.++.+.......+....+...+..|...-++.++++|+++.
T Consensus 55 ---~~w~t~E~-~~~l~~~---i~~~--~~-~~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~~~~tvVlVs~ 124 (170)
T PRK05800 55 ---AHWQTVEE-PLDLAEL---LRAD--AA-PGRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQLPAKIILVTN 124 (170)
T ss_pred ---CCCeEecc-cccHHHH---HHhh--cC-CCCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 11111111 1223332 2221 12 3679999999988653211110011223333344443457888888875
Q ss_pred CCcchhhcCCCCC---Cchhhhh-----hchhhhhhceeEEEe
Q psy2891 374 LNRSLEQRQNKRP---IMSDLRE-----SGAIEQDADVILFIY 408 (452)
Q Consensus 374 l~r~~~~r~~~~p---~l~dl~~-----S~~ie~~aD~vl~l~ 408 (452)
-... +-.| .-..+++ -..+...||.|.++.
T Consensus 125 Evg~-----g~vp~~~~~r~~~d~lG~lnq~la~~ad~V~~v~ 162 (170)
T PRK05800 125 EVGM-----GIVPEYRLGRHFRDIAGRLNQQLAAAADEVYLVV 162 (170)
T ss_pred CCcc-----cccCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEe
Confidence 3321 1112 1111222 224567888887764
No 94
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.03 E-value=0.00078 Score=65.55 Aligned_cols=41 Identities=17% Similarity=0.168 Sum_probs=36.6
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM 253 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~ 253 (452)
.+|.++.+.|+||+||||++..+|..+. ..|.+|++++.+.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~-~~g~~V~Li~~D~ 152 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK-AQGKKVLLAAGDT 152 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH-hcCCeEEEEecCc
Confidence 5678999999999999999999999886 4688999998875
No 95
>KOG2859|consensus
Probab=98.02 E-value=0.00015 Score=64.55 Aligned_cols=152 Identities=14% Similarity=0.115 Sum_probs=88.9
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHH-----hCCCcEEEEeCCCCHHH------HHHHHHHHhCCCCccccccCCC-C
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAI-----ENKLPVAIFSMEMSGIQ------LAMRMLGSVGKLDQHKLRTGRL-S 280 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~-----~~g~~vl~~s~E~~~~~------i~~R~~a~~~~i~~~~i~~g~l-~ 280 (452)
.|+++.|.||.|+|||.++.|++.+-.. +.++.|+|+.++---+. +..|+.+.. ..+...... +
T Consensus 37 aG~~vEi~Gp~~sgKt~vL~ql~a~CilPk~~GGl~~~VLfidld~~fd~lrL~~~l~hrL~q~~----~~e~~~~~c~t 112 (293)
T KOG2859|consen 37 AGTLVEISGPGNSGKTLVLQQLVAHCILPKKFGGLQWSVLFIDLDHKFDRLRLAKSLRHRLKQYS----VGEVIAAKCPT 112 (293)
T ss_pred cCcEEEEeCCCCccHHHHHHHHHHHeecccccCCceeEEEEEeccccccHHHHHHHHHHHHHHhh----hhhhhhhcCCc
Confidence 6899999999999999999999988653 12578999988754332 223333322 222111222 2
Q ss_pred cchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHH---HHHHcCCccEEEEcCcchhccCCC------CCCHHHHHH
Q psy2891 281 SDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRR---LSRQCGKIGVIIIDYLQLMSANSR------GENRATEIS 351 (452)
Q Consensus 281 ~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~---~~~~~~~~~~vvID~l~~i~~~~~------~~~~~~~~~ 351 (452)
++..+.+. ...-..-+++..... +++...+.. ....+..+-++++|+|..+.--++ .......++
T Consensus 113 e~~~eEi~---~~Cm~Rf~~v~C~~s---~~ll~sL~~l~y~i~~~p~~cll~~DslsaFyW~Dr~~~le~~n~~~~~lr 186 (293)
T KOG2859|consen 113 EEQLEEIA---GECMSRFRFVNCFAS---DDLLTSLIDLRYAIINDPGICLLAMDSLSAFYWLDRPKILEKRNSMYRHLR 186 (293)
T ss_pred HhHHHHHH---HHHHhhEEEEEeecc---HHHHHHHHHHHHHHhcCCceeEEeecchhhheeecccchHhhhhhHHHHHH
Confidence 22223222 222222334433222 233333222 223332478999999998764331 112334567
Q ss_pred HHHHHHHHHHHHhCCcEEEEecC
Q psy2891 352 EISRNLKGLAKEINCPILALSQL 374 (452)
Q Consensus 352 ~i~~~Lk~lA~~~~i~vi~l~ql 374 (452)
.+.+.|+++.+.+-+.++++.|.
T Consensus 187 ~~~q~LeKL~~d~~lv~~aT~~t 209 (293)
T KOG2859|consen 187 LLQQRLEKLCKDAILVGMATVET 209 (293)
T ss_pred HHHHHHHHHHhhheeeeeeehhH
Confidence 88899999999988888877664
No 96
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.00 E-value=0.00011 Score=72.41 Aligned_cols=90 Identities=14% Similarity=0.349 Sum_probs=61.6
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCC-CcEEEEeCCCCH---HHHHHHHHHHhCCCCccccccCCCCcchHHH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENK-LPVAIFSMEMSG---IQLAMRMLGSVGKLDQHKLRTGRLSSDDWPR 286 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g-~~vl~~s~E~~~---~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~ 286 (452)
+.+|.++++.|+||+||||++..++...+...| .+|.+++.+.-. .+. -+.++...|++...+..+ .+
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~Eq-L~~~a~~~gv~~~~~~~~----~~--- 205 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQ-LRIFGKILGVPVHAVKDG----GD--- 205 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHH-HHHHHHHcCCceEecCCc----cc---
Confidence 677899999999999999999999998765555 689999987642 122 233445567776544332 22
Q ss_pred HHHHHHHHhCCCeEEEcCCCCC
Q psy2891 287 INDSIKKINKSQLYIDETPSLN 308 (452)
Q Consensus 287 ~~~a~~~l~~~~l~i~~~~~~t 308 (452)
+..+...+.+..+.+.|+++.+
T Consensus 206 l~~~l~~l~~~DlVLIDTaG~~ 227 (374)
T PRK14722 206 LQLALAELRNKHMVLIDTIGMS 227 (374)
T ss_pred HHHHHHHhcCCCEEEEcCCCCC
Confidence 2334555666677666766655
No 97
>PRK12377 putative replication protein; Provisional
Probab=97.99 E-value=6.8e-05 Score=70.14 Aligned_cols=37 Identities=19% Similarity=0.452 Sum_probs=32.6
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
..++|.|+||+|||.++..++..+. +.|.+|+|++..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~-~~g~~v~~i~~~ 138 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLL-AKGRSVIVVTVP 138 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH-HcCCCeEEEEHH
Confidence 3589999999999999999999986 478999999874
No 98
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.96 E-value=0.00065 Score=67.04 Aligned_cols=146 Identities=12% Similarity=0.177 Sum_probs=94.0
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHH--HHHHHhCCCCccccccCCCCcchHHHHHH
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAM--RMLGSVGKLDQHKLRTGRLSSDDWPRIND 289 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~--R~~a~~~~i~~~~i~~g~l~~~~~~~~~~ 289 (452)
.+-.+++++|--|+||||.+.-+|..+.. .|++|+.++++--..--.+ +.++...+++..... ..-++.+ -..+
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~-~~~~Pv~--Iak~ 173 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSG-TEKDPVE--IAKA 173 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHH-cCCceEEEecccCChHHHHHHHHHHHHcCCceecCC-CCCCHHH--HHHH
Confidence 35568999999999999999999999965 8999999999975544443 345555677665331 1222322 2345
Q ss_pred HHHHHhC--CCeEEEcCC-CCCH-HHHHHHHHHHHHHcCCcc--EEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHH
Q psy2891 290 SIKKINK--SQLYIDETP-SLNV-IELRANSRRLSRQCGKIG--VIIIDYLQLMSANSRGENRATEISEISRNLKGLAKE 363 (452)
Q Consensus 290 a~~~l~~--~~l~i~~~~-~~t~-~~i~~~i~~~~~~~~~~~--~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~ 363 (452)
++++... ..+.|.|+. ...+ +++...++.++..-. |+ +.|||... . |.. ...-+.|-..
T Consensus 174 al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~-P~E~llVvDam~---G--------QdA---~~~A~aF~e~ 238 (451)
T COG0541 174 ALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVIN-PDETLLVVDAMI---G--------QDA---VNTAKAFNEA 238 (451)
T ss_pred HHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcC-CCeEEEEEeccc---c--------hHH---HHHHHHHhhh
Confidence 5555543 366666653 4443 456677777766553 54 88888852 1 122 2333455567
Q ss_pred hCCcEEEEecCCc
Q psy2891 364 INCPILALSQLNR 376 (452)
Q Consensus 364 ~~i~vi~l~ql~r 376 (452)
.+++-|+++-+..
T Consensus 239 l~itGvIlTKlDG 251 (451)
T COG0541 239 LGITGVILTKLDG 251 (451)
T ss_pred cCCceEEEEcccC
Confidence 8999999887654
No 99
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.94 E-value=0.00023 Score=70.08 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=34.9
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS 254 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~ 254 (452)
+..+.|.|++|+||||++..+|..+. .+|.+|++++.+--
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~-~~GkkVglI~aDt~ 280 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFH-GKKKTVGFITTDHS 280 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH-HcCCcEEEEecCCc
Confidence 35899999999999999999999886 57899999998743
No 100
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.94 E-value=0.00012 Score=74.00 Aligned_cols=43 Identities=21% Similarity=0.394 Sum_probs=37.0
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHH-HhCCCcEEEEeCCCC
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIA-IENKLPVAIFSMEMS 254 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a-~~~g~~vl~~s~E~~ 254 (452)
.+|.++++.|++|+||||++..+|..++ ...|.+|++++++.-
T Consensus 219 ~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 219 KQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 3467999999999999999999999887 456789999998753
No 101
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.92 E-value=0.00034 Score=64.53 Aligned_cols=167 Identities=10% Similarity=0.071 Sum_probs=87.0
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCC-------------CcEEEEeCC------CCHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENK-------------LPVAIFSME------MSGIQLAMRML 263 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g-------------~~vl~~s~E------~~~~~i~~R~~ 263 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..-...| ..+.|+.-+ ++..+...-.
T Consensus 19 il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~- 97 (220)
T cd03293 19 ALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALG- 97 (220)
T ss_pred EEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHHH-
Confidence 45655445899999999999999999999877754311122 123333211 1111111000
Q ss_pred HHhCCCCccccccCCCCc-chHHHHHHHHHHHhCCCeEEEc-CCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCC
Q psy2891 264 GSVGKLDQHKLRTGRLSS-DDWPRINDSIKKINKSQLYIDE-TPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANS 341 (452)
Q Consensus 264 a~~~~i~~~~i~~g~l~~-~~~~~~~~a~~~l~~~~l~i~~-~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~ 341 (452)
....+ +.. ....++.+.++.+. ..-+... ...+|-.+.+...-...-.. +++++++|.-..
T Consensus 98 ~~~~~----------~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LSgG~~qrl~la~al~~-~p~lllLDEPt~----- 160 (220)
T cd03293 98 LELQG----------VPKAEARERAEELLELVG-LSGFENAYPHQLSGGMRQRVALARALAV-DPDVLLLDEPFS----- 160 (220)
T ss_pred HHHcC----------CCHHHHHHHHHHHHHHcC-ChhhhhCCcccCCHHHHHHHHHHHHHHc-CCCEEEECCCCC-----
Confidence 00000 111 11122333333321 1001111 23456555443322222223 499999998532
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEe
Q psy2891 342 RGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIY 408 (452)
Q Consensus 342 ~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~ 408 (452)
+-+. .....+.+.|+.+.++.+.+||+++|--. .+...||.++.|.
T Consensus 161 -~LD~-~~~~~~~~~l~~~~~~~~~tiii~sH~~~-------------------~~~~~~d~i~~l~ 206 (220)
T cd03293 161 -ALDA-LTREQLQEELLDIWRETGKTVLLVTHDID-------------------EAVFLADRVVVLS 206 (220)
T ss_pred -CCCH-HHHHHHHHHHHHHHHHcCCEEEEEecCHH-------------------HHHHhCCEEEEEE
Confidence 1222 23356777788887778889999988432 2556789999886
No 102
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.91 E-value=0.00012 Score=68.43 Aligned_cols=107 Identities=17% Similarity=0.271 Sum_probs=66.9
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHHHHh
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKIN 295 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~ 295 (452)
.+++.|+||+|||.++..++..+.. .|.+|+|++. .++..++.....
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~-~g~~v~~it~----~~l~~~l~~~~~---------------------------- 147 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLL-RGKSVLIITV----ADIMSAMKDTFS---------------------------- 147 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEEH----HHHHHHHHHHHh----------------------------
Confidence 5899999999999999999999864 6899999964 455555432110
Q ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCC
Q psy2891 296 KSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLN 375 (452)
Q Consensus 296 ~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~ 375 (452)
....+.+++.. .+ . +++++|||.++.... ..+.. .++..+-.---+.+.|+|+++.++
T Consensus 148 --------~~~~~~~~~l~---~l---~-~~dlLvIDDig~~~~-----s~~~~--~~l~~Ii~~Ry~~~~~tiitSNl~ 205 (244)
T PRK07952 148 --------NSETSEEQLLN---DL---S-NVDLLVIDEIGVQTE-----SRYEK--VIINQIVDRRSSSKRPTGMLTNSN 205 (244)
T ss_pred --------hccccHHHHHH---Hh---c-cCCEEEEeCCCCCCC-----CHHHH--HHHHHHHHHHHhCCCCEEEeCCCC
Confidence 00112223322 22 1 499999999977542 22221 222233222223469999999988
Q ss_pred cc
Q psy2891 376 RS 377 (452)
Q Consensus 376 r~ 377 (452)
-.
T Consensus 206 ~~ 207 (244)
T PRK07952 206 ME 207 (244)
T ss_pred HH
Confidence 54
No 103
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.90 E-value=0.00039 Score=63.74 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=41.6
Q ss_pred CccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhcee
Q psy2891 325 KIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVI 404 (452)
Q Consensus 325 ~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~v 404 (452)
+++++++|.-.. +-+. .....+.+.|+.++++.+.+||+++|-.. .+...||.+
T Consensus 148 ~p~~lllDEPt~------~LD~-~~~~~l~~~l~~~~~~~~~tii~~sH~~~-------------------~~~~~~d~v 201 (213)
T cd03259 148 EPSLLLLDEPLS------ALDA-KLREELREELKELQRELGITTIYVTHDQE-------------------EALALADRI 201 (213)
T ss_pred CCCEEEEcCCcc------cCCH-HHHHHHHHHHHHHHHHcCCEEEEEecCHH-------------------HHHHhcCEE
Confidence 499999998532 1222 23457778888888777999999988432 256678999
Q ss_pred EEEec
Q psy2891 405 LFIYR 409 (452)
Q Consensus 405 l~l~r 409 (452)
+.|.+
T Consensus 202 ~~l~~ 206 (213)
T cd03259 202 AVMNE 206 (213)
T ss_pred EEEEC
Confidence 98864
No 104
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.90 E-value=0.00033 Score=64.22 Aligned_cols=166 Identities=15% Similarity=0.142 Sum_probs=86.9
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCC----------------cEEEEeCC------CCHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKL----------------PVAIFSME------MSGIQLAM 260 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~----------------~vl~~s~E------~~~~~i~~ 260 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-...-..|. .+.|+.-+ .+..+...
T Consensus 15 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~ 94 (213)
T cd03301 15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIA 94 (213)
T ss_pred eeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHH
Confidence 455554458999999999999999999998777543211221 12332211 11111100
Q ss_pred HHHHHhCCCCccccccCCCCcch-HHHHHHHHHHHhCCCeEEEc-CCCCCHHHHHHH--HHHHHHHcCCccEEEEcCcch
Q psy2891 261 RMLGSVGKLDQHKLRTGRLSSDD-WPRINDSIKKINKSQLYIDE-TPSLNVIELRAN--SRRLSRQCGKIGVIIIDYLQL 336 (452)
Q Consensus 261 R~~a~~~~i~~~~i~~g~l~~~~-~~~~~~a~~~l~~~~l~i~~-~~~~t~~~i~~~--i~~~~~~~~~~~~vvID~l~~ 336 (452)
.. .. . .+ ....+ ..++.++.+.+. ..-+... ...+|-.+-+.. ++.+. . +++++++|.-..
T Consensus 95 ~~-~~--------~-~~-~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LS~G~~qr~~laral~--~-~p~llllDEPt~ 159 (213)
T cd03301 95 FG-LK--------L-RK-VPKDEIDERVREVAELLQ-IEHLLDRKPKQLSGGQRQRVALGRAIV--R-EPKVFLMDEPLS 159 (213)
T ss_pred HH-HH--------h-cC-CCHHHHHHHHHHHHHHcC-CHHHHhCChhhCCHHHHHHHHHHHHHh--c-CCCEEEEcCCcc
Confidence 00 00 0 01 11111 112222222221 1101111 234555554432 33332 3 499999998532
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEec
Q psy2891 337 MSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYR 409 (452)
Q Consensus 337 i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r 409 (452)
+-+ ......+.+.|+.++++.+.+||+++|-.. .+.+.+|.++.+.+
T Consensus 160 ------~LD-~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-------------------~~~~~~d~i~~l~~ 206 (213)
T cd03301 160 ------NLD-AKLRVQMRAELKRLQQRLGTTTIYVTHDQV-------------------EAMTMADRIAVMND 206 (213)
T ss_pred ------cCC-HHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-------------------HHHHhcCeEEEEEC
Confidence 122 223457778888888888999999988422 25566888888854
No 105
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.89 E-value=0.00044 Score=63.48 Aligned_cols=172 Identities=13% Similarity=0.171 Sum_probs=84.4
Q ss_pred CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC-CHHHHHHHHHHHhCC-------CCcc-ccccC--
Q psy2891 209 SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM-SGIQLAMRMLGSVGK-------LDQH-KLRTG-- 277 (452)
Q Consensus 209 gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~-~~~~i~~R~~a~~~~-------i~~~-~i~~g-- 277 (452)
--+.+|+.+.|.|++|+|||||+.-++-..-...| .|. +.... .......+.++.... .+.. .+.-+
T Consensus 19 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~-~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~ 96 (213)
T TIGR01277 19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASG-SIK-VNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLH 96 (213)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEE-ECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhh
Confidence 35889999999999999999999988765422122 232 21110 000000011100000 0000 00000
Q ss_pred ---CCCcchHHHHHHHHHHHhCCCeEEEc-CCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHH
Q psy2891 278 ---RLSSDDWPRINDSIKKINKSQLYIDE-TPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEI 353 (452)
Q Consensus 278 ---~l~~~~~~~~~~a~~~l~~~~l~i~~-~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i 353 (452)
........++.++.+.+.-.. +... ...+|..+.+...-...--. +++++++|....- .+ ......+
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~laral~~-~p~llllDEPt~~------LD-~~~~~~~ 167 (213)
T TIGR01277 97 PGLKLNAEQQEKVVDAAQQVGIAD-YLDRLPEQLSGGQRQRVALARCLVR-PNPILLLDEPFSA------LD-PLLREEM 167 (213)
T ss_pred ccCCccHHHHHHHHHHHHHcCcHH-HhhCCcccCCHHHHHHHHHHHHHhc-CCCEEEEcCCCcc------CC-HHHHHHH
Confidence 000111122333333221001 1111 22456555443322211123 4999999985421 12 2234567
Q ss_pred HHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecC
Q psy2891 354 SRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRD 410 (452)
Q Consensus 354 ~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~ 410 (452)
.+.|+.+.++.+.+||+++|-.. .+...+|.++.+.+.
T Consensus 168 ~~~l~~~~~~~~~tii~vsh~~~-------------------~~~~~~d~v~~l~~g 205 (213)
T TIGR01277 168 LALVKQLCSERQRTLLMVTHHLS-------------------DARAIASQIAVVSQG 205 (213)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHH-------------------HHHhhcCeEEEEECC
Confidence 77888888777899999987432 245678999988653
No 106
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.89 E-value=7.9e-05 Score=71.86 Aligned_cols=176 Identities=15% Similarity=0.159 Sum_probs=91.8
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC-C-------CHHHHHHHHHHHhCCCCccc
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME-M-------SGIQLAMRMLGSVGKLDQHK 273 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E-~-------~~~~i~~R~~a~~~~i~~~~ 273 (452)
+.|+.+.--+.+|+++.|.|++|+|||||+.-++-..--..| .|. +..+ . ...... +.++....-+...
T Consensus 21 ~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~-~~g~~i~~~~~~~~~~~~~-~~ig~v~q~~~~~ 97 (290)
T PRK13634 21 RALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG-TVT-IGERVITAGKKNKKLKPLR-KKVGIVFQFPEHQ 97 (290)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-EEE-ECCEECccccccchHHHHH-hhEEEEeeCchhh
Confidence 467777556999999999999999999999888754321112 222 2221 0 001111 1111000000000
Q ss_pred cc-------------cCCCCcchH-HHHHHHHHHHhCCCeEEEc--CCCCCHHHHHH--HHHHHHHHcCCccEEEEcCcc
Q psy2891 274 LR-------------TGRLSSDDW-PRINDSIKKINKSQLYIDE--TPSLNVIELRA--NSRRLSRQCGKIGVIIIDYLQ 335 (452)
Q Consensus 274 i~-------------~g~l~~~~~-~~~~~a~~~l~~~~l~i~~--~~~~t~~~i~~--~i~~~~~~~~~~~~vvID~l~ 335 (452)
+. ...++..+. .++.++++.+. ..-.+.+ ...+|-.+-+. .++.+. . +|+++++|...
T Consensus 98 l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~g-L~~~~~~~~~~~LSgGq~qrv~lAraL~--~-~P~llllDEPt 173 (290)
T PRK13634 98 LFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVG-LPEELLARSPFELSGGQMRRVAIAGVLA--M-EPEVLVLDEPT 173 (290)
T ss_pred hhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCC-CChhhhhCCcccCCHHHHHHHHHHHHHH--c-CCCEEEEECCc
Confidence 00 001222222 23333333331 1101112 23456554433 233332 2 59999999964
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecC
Q psy2891 336 LMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRD 410 (452)
Q Consensus 336 ~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~ 410 (452)
.- -+. .....+.+.|+.++++.|.+||+++|--. .+...||.|+.++.-
T Consensus 174 ~~------LD~-~~~~~l~~~L~~l~~~~g~tviiitHd~~-------------------~~~~~~drv~~l~~G 222 (290)
T PRK13634 174 AG------LDP-KGRKEMMEMFYKLHKEKGLTTVLVTHSME-------------------DAARYADQIVVMHKG 222 (290)
T ss_pred cc------CCH-HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-------------------HHHHhCCEEEEEECC
Confidence 21 222 23457778888888888999999988432 245668888888653
No 107
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.88 E-value=0.00035 Score=63.97 Aligned_cols=59 Identities=14% Similarity=0.143 Sum_probs=41.2
Q ss_pred CccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhcee
Q psy2891 325 KIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVI 404 (452)
Q Consensus 325 ~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~v 404 (452)
+++++++|.-..- -+. .....+.+.|+.++++.+.+||+++|-.. .+.+.||.+
T Consensus 146 ~p~llllDEP~~~------LD~-~~~~~l~~~l~~~~~~~~~tii~~sH~~~-------------------~~~~~~d~i 199 (211)
T cd03298 146 DKPVLLLDEPFAA------LDP-ALRAEMLDLVLDLHAETKMTVLMVTHQPE-------------------DAKRLAQRV 199 (211)
T ss_pred CCCEEEEcCCccc------CCH-HHHHHHHHHHHHHHHhcCCEEEEEecCHH-------------------HHHhhhCEE
Confidence 4999999985321 121 22346777888888888999999988432 355678999
Q ss_pred EEEec
Q psy2891 405 LFIYR 409 (452)
Q Consensus 405 l~l~r 409 (452)
+.+.+
T Consensus 200 ~~l~~ 204 (211)
T cd03298 200 VFLDN 204 (211)
T ss_pred EEEEC
Confidence 98864
No 108
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.87 E-value=0.00042 Score=64.82 Aligned_cols=36 Identities=17% Similarity=0.471 Sum_probs=29.5
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 16 ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 455554458999999999999999999998887543
No 109
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.86 E-value=0.00048 Score=64.25 Aligned_cols=176 Identities=16% Similarity=0.170 Sum_probs=88.8
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC----CCHHHH--HHHHHHHhCCC-------
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME----MSGIQL--AMRMLGSVGKL------- 269 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E----~~~~~i--~~R~~a~~~~i------- 269 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..--..| .|.| ... .+..+. ..+.++....-
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G-~i~~-~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (235)
T cd03261 15 VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSG-EVLI-DGEDISGLSEAELYRLRRRMGMLFQSGALFDSL 92 (235)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEE-CCEEccccChhhHHHHhcceEEEccCcccCCCC
Confidence 45665445899999999999999999999888754321122 2333 221 111111 11111111100
Q ss_pred Cccc-cc-----cCCCCcch-HHHHHHHHHHHhCCCeEEEc-CCCCCHHHHHHH--HHHHHHHcCCccEEEEcCcchhcc
Q psy2891 270 DQHK-LR-----TGRLSSDD-WPRINDSIKKINKSQLYIDE-TPSLNVIELRAN--SRRLSRQCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 270 ~~~~-i~-----~g~l~~~~-~~~~~~a~~~l~~~~l~i~~-~~~~t~~~i~~~--i~~~~~~~~~~~~vvID~l~~i~~ 339 (452)
+... +. ....+..+ ..++.++.+.+. ..-+... ...+|-.+-+.. ++.+. . +++++++|.-..-
T Consensus 93 tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LSgG~~qrv~ia~al~--~-~p~llllDEPt~~-- 166 (235)
T cd03261 93 TVFENVAFPLREHTRLSEEEIREIVLEKLEAVG-LRGAEDLYPAELSGGMKKRVALARALA--L-DPELLLYDEPTAG-- 166 (235)
T ss_pred cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcC-CchhhcCChhhCCHHHHHHHHHHHHHh--c-CCCEEEecCCccc--
Confidence 0000 00 00111111 122233333321 1111121 234565544332 33332 3 4999999985321
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecC
Q psy2891 340 NSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRD 410 (452)
Q Consensus 340 ~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~ 410 (452)
-+. .....+.+.|+.++++.+.+||+++|--. .+...||.++.|...
T Consensus 167 ----LD~-~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-------------------~~~~~~d~v~~l~~G 213 (235)
T cd03261 167 ----LDP-IASGVIDDLIRSLKKELGLTSIMVTHDLD-------------------TAFAIADRIAVLYDG 213 (235)
T ss_pred ----CCH-HHHHHHHHHHHHHHHhcCcEEEEEecCHH-------------------HHHHhcCEEEEEECC
Confidence 222 23456777888888777899999988321 245678999988643
No 110
>PF13173 AAA_14: AAA domain
Probab=97.86 E-value=0.00013 Score=61.11 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=35.3
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGI 256 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~ 256 (452)
+.+++|.|+.|+|||+++.+++.... .+.+++|++++....
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~--~~~~~~yi~~~~~~~ 42 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL--PPENILYINFDDPRD 42 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc--ccccceeeccCCHHH
Confidence 46899999999999999999998874 457899999997644
No 111
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.85 E-value=0.00018 Score=60.85 Aligned_cols=40 Identities=20% Similarity=0.368 Sum_probs=33.3
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM 253 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~ 253 (452)
.+..++|.|+||+|||+++..++..+. ..+.++.|++...
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~-~~~~~v~~~~~~~ 57 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF-RPGAPFLYLNASD 57 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh-cCCCCeEEEehhh
Confidence 355899999999999999999998885 4578899887653
No 112
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.85 E-value=0.00016 Score=64.29 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=34.3
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRM 262 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~ 262 (452)
.|.-.++.|+||+|||.+|..++..++. .|.+|+|++. .+++.++
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~-~g~~v~f~~~----~~L~~~l 90 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIR-KGYSVLFITA----SDLLDEL 90 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHH-TT--EEEEEH----HHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhcc-CCcceeEeec----Cceeccc
Confidence 4556899999999999999999999875 8999999975 4566665
No 113
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.85 E-value=0.00027 Score=67.27 Aligned_cols=40 Identities=15% Similarity=0.266 Sum_probs=35.3
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM 253 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~ 253 (452)
++.++++.|+||+||||.+.++|..++ +.|++|+.++++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~-~~g~~V~li~~D~ 110 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK-KQGKSVLLAAGDT 110 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-hcCCEEEEEeCCC
Confidence 456888889999999999999999886 5789999999885
No 114
>PRK06921 hypothetical protein; Provisional
Probab=97.85 E-value=0.00026 Score=67.20 Aligned_cols=38 Identities=24% Similarity=0.429 Sum_probs=32.3
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
+..+++.|+||+|||.|+..++..+..+.|..|+|++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 34689999999999999999999886433899999986
No 115
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.84 E-value=0.00051 Score=63.85 Aligned_cols=60 Identities=13% Similarity=0.110 Sum_probs=41.5
Q ss_pred CccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhcee
Q psy2891 325 KIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVI 404 (452)
Q Consensus 325 ~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~v 404 (452)
+++++++|.-.. +-+. .....+.+.|+.++++.+.+||+++|--. .+...+|.+
T Consensus 143 ~p~vllLDEPt~------~LD~-~~~~~l~~~l~~~~~~~~~tiii~sH~~~-------------------~~~~~~d~i 196 (230)
T TIGR02770 143 EPPFLIADEPTT------DLDV-VNQARVLKLLRELRQLFGTGILLITHDLG-------------------VVARIADEV 196 (230)
T ss_pred CCCEEEEcCCcc------ccCH-HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-------------------HHHHhCCEE
Confidence 489999998532 1222 23346777888888777899999988422 255678999
Q ss_pred EEEecC
Q psy2891 405 LFIYRD 410 (452)
Q Consensus 405 l~l~r~ 410 (452)
+.|.+.
T Consensus 197 ~~l~~G 202 (230)
T TIGR02770 197 AVMDDG 202 (230)
T ss_pred EEEECC
Confidence 988654
No 116
>PRK14974 cell division protein FtsY; Provisional
Probab=97.84 E-value=0.00041 Score=67.79 Aligned_cols=41 Identities=20% Similarity=0.207 Sum_probs=35.0
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS 254 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~ 254 (452)
++.++++.|+||+||||.+..+|..+. ..|.+|++++.+.-
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~~V~li~~Dt~ 179 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGFSVVIAAGDTF 179 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEecCCcC
Confidence 356999999999999999999998774 57889999988753
No 117
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.84 E-value=0.00047 Score=63.36 Aligned_cols=35 Identities=23% Similarity=0.425 Sum_probs=29.4
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++--
T Consensus 18 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 18 ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46666456899999999999999999999887754
No 118
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.83 E-value=0.00057 Score=63.60 Aligned_cols=173 Identities=16% Similarity=0.207 Sum_probs=88.0
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC---CHHHH--HHHHHHHhCCCCcccccc-
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM---SGIQL--AMRMLGSVGKLDQHKLRT- 276 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~---~~~~i--~~R~~a~~~~i~~~~i~~- 276 (452)
.|+.+.--+.+|+.+.|.|++|+|||||+.-++-...- ....|.|-.-+. +.... ..+.++....-+ .+..
T Consensus 20 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~--~~~~~ 96 (233)
T cd03258 20 ALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP-TSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHF--NLLSS 96 (233)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEECCEEcccCCHHHHHHHHhheEEEccCc--ccCCC
Confidence 45555445899999999999999999999877755422 222343321111 11111 111111111000 0000
Q ss_pred C-------------CCCcch-HHHHHHHHHHHhCCCeE--EE-cCCCCCHHHHHHH--HHHHHHHcCCccEEEEcCcchh
Q psy2891 277 G-------------RLSSDD-WPRINDSIKKINKSQLY--ID-ETPSLNVIELRAN--SRRLSRQCGKIGVIIIDYLQLM 337 (452)
Q Consensus 277 g-------------~l~~~~-~~~~~~a~~~l~~~~l~--i~-~~~~~t~~~i~~~--i~~~~~~~~~~~~vvID~l~~i 337 (452)
. .....+ ..++.++.+.+ .+. .. ....+|-.+.+.. ++.+. . +++++++|....
T Consensus 97 ~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~---~l~~~~~~~~~~LS~G~~qrv~la~al~--~-~p~lllLDEP~~- 169 (233)
T cd03258 97 RTVFENVALPLEIAGVPKAEIEERVLELLELV---GLEDKADAYPAQLSGGQKQRVGIARALA--N-NPKVLLCDEATS- 169 (233)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC---CChhhhhcChhhCCHHHHHHHHHHHHHh--c-CCCEEEecCCCC-
Confidence 0 011111 11122222222 221 11 1234555554332 33332 3 499999998532
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecC
Q psy2891 338 SANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRD 410 (452)
Q Consensus 338 ~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~ 410 (452)
+-+. .....+.+.|+.++++.+.+||+++|-.. .+...||.++.+.+.
T Consensus 170 -----~LD~-~~~~~l~~~l~~~~~~~~~tvii~sH~~~-------------------~~~~~~d~i~~l~~G 217 (233)
T cd03258 170 -----ALDP-ETTQSILALLRDINRELGLTIVLITHEME-------------------VVKRICDRVAVMEKG 217 (233)
T ss_pred -----cCCH-HHHHHHHHHHHHHHHHcCCEEEEEeCCHH-------------------HHHHhCCEEEEEECC
Confidence 1222 23346777888888877899999988321 356678999988643
No 119
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.83 E-value=0.00051 Score=63.38 Aligned_cols=175 Identities=14% Similarity=0.106 Sum_probs=88.2
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC-C--CHHHHHHHHHHHhCCCCcccccc---
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME-M--SGIQLAMRMLGSVGKLDQHKLRT--- 276 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E-~--~~~~i~~R~~a~~~~i~~~~i~~--- 276 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..--..| .|. +..+ . ....+. +.++....-+ .+..
T Consensus 15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~-~~g~~~~~~~~~~~-~~i~~~~q~~--~~~~~~t 89 (220)
T cd03265 15 AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG-RAT-VAGHDVVREPREVR-RRIGIVFQDL--SVDDELT 89 (220)
T ss_pred eeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEE-ECCEecCcChHHHh-hcEEEecCCc--cccccCc
Confidence 45555456889999999999999999999877753311122 233 2221 1 111111 1111100000 0000
Q ss_pred -----------CCCCcc-hHHHHHHHHHHHhCCCeEEEc-CCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCC
Q psy2891 277 -----------GRLSSD-DWPRINDSIKKINKSQLYIDE-TPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRG 343 (452)
Q Consensus 277 -----------g~l~~~-~~~~~~~a~~~l~~~~l~i~~-~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~ 343 (452)
...... ...++.+..+.+. ..-+... ...+|-.+-+...-...--. +++++++|.... +
T Consensus 90 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LS~G~~qr~~la~al~~-~p~llllDEPt~------~ 161 (220)
T cd03265 90 GWENLYIHARLYGVPGAERRERIDELLDFVG-LLEAADRLVKTYSGGMRRRLEIARSLVH-RPEVLFLDEPTI------G 161 (220)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHhhCChhhCCHHHHHHHHHHHHHhc-CCCEEEEcCCcc------C
Confidence 001111 1122333333321 1111111 23455555443222222223 499999998532 1
Q ss_pred CCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecC
Q psy2891 344 ENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRD 410 (452)
Q Consensus 344 ~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~ 410 (452)
-+. .....+.+.|+.++++++.+||+++|--. .+.+.+|.++.+...
T Consensus 162 LD~-~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-------------------~~~~~~d~i~~l~~G 208 (220)
T cd03265 162 LDP-QTRAHVWEYIEKLKEEFGMTILLTTHYME-------------------EAEQLCDRVAIIDHG 208 (220)
T ss_pred CCH-HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-------------------HHHHhCCEEEEEeCC
Confidence 222 23456777888888888899999987321 356678999888643
No 120
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.83 E-value=0.0011 Score=67.90 Aligned_cols=91 Identities=16% Similarity=0.261 Sum_probs=55.3
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhC-CCcEEEEeCCCCHHHHHH--HHHHHhCCCCccccccCCCCcchHHHH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIEN-KLPVAIFSMEMSGIQLAM--RMLGSVGKLDQHKLRTGRLSSDDWPRI 287 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~-g~~vl~~s~E~~~~~i~~--R~~a~~~~i~~~~i~~g~l~~~~~~~~ 287 (452)
+.+|.++.|.|++|+||||++..++..++.+. +.+|.+++.+...---.. +..+...+++..... +...+
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~-------d~~~L 419 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEAD-------SAESL 419 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecC-------cHHHH
Confidence 56789999999999999999999999886543 578999988642210111 111223344332111 11234
Q ss_pred HHHHHHHhCCCeEEEcCCCCC
Q psy2891 288 NDSIKKINKSQLYIDETPSLN 308 (452)
Q Consensus 288 ~~a~~~l~~~~l~i~~~~~~t 308 (452)
...++.+.+..+.+.|+++..
T Consensus 420 ~~aL~~l~~~DLVLIDTaG~s 440 (559)
T PRK12727 420 LDLLERLRDYKLVLIDTAGMG 440 (559)
T ss_pred HHHHHHhccCCEEEecCCCcc
Confidence 445555555566666665544
No 121
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.81 E-value=0.00031 Score=62.95 Aligned_cols=176 Identities=17% Similarity=0.191 Sum_probs=94.5
Q ss_pred ccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccc------
Q psy2891 201 FFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKL------ 274 (452)
Q Consensus 201 ~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i------ 274 (452)
+.-|+.+.--+.+|++++|.||+|+|||||+..+-.-- .-...-++|..+......-.+.+....|+-...+
T Consensus 15 ~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE--~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHl 92 (240)
T COG1126 15 KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE--EPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHL 92 (240)
T ss_pred eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCc--CCCCceEEECCEeccchhhHHHHHHhcCeecccccccccc
Confidence 44555554568999999999999999999988654422 2223456666542211111111112233222111
Q ss_pred -----------ccCCCCcchHHHHHHHHHHHhCCCeE--EEc-CCCCCHH--HHHHHHHHHHHHcCCccEEEEcCcchhc
Q psy2891 275 -----------RTGRLSSDDWPRINDSIKKINKSQLY--IDE-TPSLNVI--ELRANSRRLSRQCGKIGVIIIDYLQLMS 338 (452)
Q Consensus 275 -----------~~g~l~~~~~~~~~~a~~~l~~~~l~--i~~-~~~~t~~--~i~~~i~~~~~~~~~~~~vvID~l~~i~ 338 (452)
.-..++.++ .-..|.+.|..-.+. .+. ...+|=. +=.+.+|.+.. +|+++..|-.+.--
T Consensus 93 TvleNv~lap~~v~~~~k~e--A~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM---~P~vmLFDEPTSAL 167 (240)
T COG1126 93 TVLENVTLAPVKVKKLSKAE--AREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAM---DPKVMLFDEPTSAL 167 (240)
T ss_pred hHHHHHHhhhHHHcCCCHHH--HHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcC---CCCEEeecCCcccC
Confidence 001233332 223344444322211 111 2233322 22334444432 49999999865322
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecC
Q psy2891 339 ANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRD 410 (452)
Q Consensus 339 ~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~ 410 (452)
. -+-++++..-++.+|++ |.+.+++.|== +-....||.|+|+..-
T Consensus 168 D-------PElv~EVL~vm~~LA~e-GmTMivVTHEM-------------------~FAr~VadrviFmd~G 212 (240)
T COG1126 168 D-------PELVGEVLDVMKDLAEE-GMTMIIVTHEM-------------------GFAREVADRVIFMDQG 212 (240)
T ss_pred C-------HHHHHHHHHHHHHHHHc-CCeEEEEechh-------------------HHHHHhhheEEEeeCC
Confidence 2 23567888889999975 67777776621 1245679999999764
No 122
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.80 E-value=0.00083 Score=62.64 Aligned_cols=35 Identities=26% Similarity=0.409 Sum_probs=28.8
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-.
T Consensus 15 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 45555445899999999999999999999877754
No 123
>PRK06526 transposase; Provisional
Probab=97.80 E-value=0.00023 Score=66.94 Aligned_cols=46 Identities=20% Similarity=0.344 Sum_probs=36.5
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRM 262 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~ 262 (452)
..+.-++|.|+||+|||.++..++..++ ..|.+|+|++. .++..++
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~-~~g~~v~f~t~----~~l~~~l 141 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRAC-QAGHRVLFATA----AQWVARL 141 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHH-HCCCchhhhhH----HHHHHHH
Confidence 3456789999999999999999999887 47899998644 3455554
No 124
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.79 E-value=0.00052 Score=66.69 Aligned_cols=37 Identities=19% Similarity=0.163 Sum_probs=30.7
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
..|+.+.--+.+|+++.|.|+.|+||||++.-++--.
T Consensus 21 ~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~ 57 (306)
T PRK13537 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLT 57 (306)
T ss_pred EEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4667765568999999999999999999998887543
No 125
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.78 E-value=0.00073 Score=63.86 Aligned_cols=168 Identities=13% Similarity=0.052 Sum_probs=86.6
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCC-------------cEEEEeCC------CCHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKL-------------PVAIFSME------MSGIQLAMRML 263 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~-------------~vl~~s~E------~~~~~i~~R~~ 263 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..--..|. .+.|+.-+ .+..+.....
T Consensus 16 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~- 94 (255)
T PRK11248 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFG- 94 (255)
T ss_pred eEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHHHHhH-
Confidence 455554458999999999999999999998877543111221 12222211 1111111000
Q ss_pred HHhCCCCccccccCCCCcc-hHHHHHHHHHHHhCCCeEEE-cCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCC
Q psy2891 264 GSVGKLDQHKLRTGRLSSD-DWPRINDSIKKINKSQLYID-ETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANS 341 (452)
Q Consensus 264 a~~~~i~~~~i~~g~l~~~-~~~~~~~a~~~l~~~~l~i~-~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~ 341 (452)
.... + +... ...++.+..+.+. ..-+.. ....+|-.+-+...-...--. +++++++|.-..
T Consensus 95 ~~~~---------~-~~~~~~~~~~~~~l~~~g-l~~~~~~~~~~LSgGq~qrl~laral~~-~p~lllLDEPt~----- 157 (255)
T PRK11248 95 LQLA---------G-VEKMQRLEIAHQMLKKVG-LEGAEKRYIWQLSGGQRQRVGIARALAA-NPQLLLLDEPFG----- 157 (255)
T ss_pred HHHc---------C-CCHHHHHHHHHHHHHHcC-ChhHhhCChhhCCHHHHHHHHHHHHHhc-CCCEEEEeCCCc-----
Confidence 0000 1 1111 1122333333321 110111 123456555433322222223 499999998432
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEec
Q psy2891 342 RGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYR 409 (452)
Q Consensus 342 ~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r 409 (452)
+-+. .....+.+.|+.++++.+.+||+++|--. .+...||.++.|..
T Consensus 158 -~LD~-~~~~~l~~~L~~~~~~~g~tviivsH~~~-------------------~~~~~~d~i~~l~~ 204 (255)
T PRK11248 158 -ALDA-FTREQMQTLLLKLWQETGKQVLLITHDIE-------------------EAVFMATELVLLSP 204 (255)
T ss_pred -cCCH-HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-------------------HHHHhCCEEEEEeC
Confidence 1222 23456677788877767899999988432 35667899999863
No 126
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=97.78 E-value=0.0006 Score=66.82 Aligned_cols=181 Identities=13% Similarity=0.080 Sum_probs=93.0
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC---CCHHHHHH--HHHHHhCCCCcc----
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME---MSGIQLAM--RMLGSVGKLDQH---- 272 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E---~~~~~i~~--R~~a~~~~i~~~---- 272 (452)
..|+.+.--+.+|+++.|.|++|+|||||+.-++--... ....|.|-.-+ ++..++.. +-++....-+..
T Consensus 29 ~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p-~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p 107 (327)
T PRK11308 29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP-TGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNP 107 (327)
T ss_pred eEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC-CCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCC
Confidence 456766445899999999999999999999887764321 22234442212 22222211 111111110000
Q ss_pred --cc----c-----cCCCCcch-HHHHHHHHHHHhCCCeEEE-cCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhcc
Q psy2891 273 --KL----R-----TGRLSSDD-WPRINDSIKKINKSQLYID-ETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 273 --~i----~-----~g~l~~~~-~~~~~~a~~~l~~~~l~i~-~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~ 339 (452)
.+ . ...+...+ ..++.++++.+.-.+-... ....+|-.+....+-...-.. +++++|.|.-...-
T Consensus 108 ~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~-~P~lLilDEPts~L- 185 (327)
T PRK11308 108 RKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALML-DPDVVVADEPVSAL- 185 (327)
T ss_pred ccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHc-CCCEEEEECCCccC-
Confidence 00 0 01122211 1233333333211111111 123556555443322222223 49999999964322
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecC
Q psy2891 340 NSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRD 410 (452)
Q Consensus 340 ~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~ 410 (452)
+ ......+.+.|+.+.++.+.+||+++|--. .+.+.||.|+.|+..
T Consensus 186 -----D-~~~~~~i~~lL~~l~~~~g~til~iTHdl~-------------------~~~~~adrv~vm~~G 231 (327)
T PRK11308 186 -----D-VSVQAQVLNLMMDLQQELGLSYVFISHDLS-------------------VVEHIADEVMVMYLG 231 (327)
T ss_pred -----C-HHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-------------------HHHHhCCEEEEEECC
Confidence 1 223457788888888889999999988432 234457777777653
No 127
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.78 E-value=0.00025 Score=63.30 Aligned_cols=153 Identities=15% Similarity=0.204 Sum_probs=83.2
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC----CCHHHHHHHHHHHhCCCCccccccCC
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME----MSGIQLAMRMLGSVGKLDQHKLRTGR 278 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E----~~~~~i~~R~~a~~~~i~~~~i~~g~ 278 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..-...| .| ++..+ .+...+..+ ++....
T Consensus 14 ~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G-~v-~~~g~~~~~~~~~~~~~~-i~~~~q---------- 80 (180)
T cd03214 14 VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSG-EI-LLDGKDLASLSPKELARK-IAYVPQ---------- 80 (180)
T ss_pred eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EE-EECCEECCcCCHHHHHHH-HhHHHH----------
Confidence 45555445899999999999999999998877654321222 34 34322 122222221 111000
Q ss_pred CCcchHHHHHHHHHHHhCCCeEEE-cCCCCCHHHHHH--HHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHH
Q psy2891 279 LSSDDWPRINDSIKKINKSQLYID-ETPSLNVIELRA--NSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISR 355 (452)
Q Consensus 279 l~~~~~~~~~~a~~~l~~~~l~i~-~~~~~t~~~i~~--~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~ 355 (452)
+.+.+. ..-++. ....+|-.+.+. .++.+. . +++++++|.-.. +-+. .....+.+
T Consensus 81 -----------~l~~~g-l~~~~~~~~~~LS~G~~qrl~laral~--~-~p~llllDEP~~------~LD~-~~~~~~~~ 138 (180)
T cd03214 81 -----------ALELLG-LAHLADRPFNELSGGERQRVLLARALA--Q-EPPILLLDEPTS------HLDI-AHQIELLE 138 (180)
T ss_pred -----------HHHHcC-CHhHhcCCcccCCHHHHHHHHHHHHHh--c-CCCEEEEeCCcc------CCCH-HHHHHHHH
Confidence 111110 000000 112345444333 233332 2 499999998532 1121 23456777
Q ss_pred HHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEec
Q psy2891 356 NLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYR 409 (452)
Q Consensus 356 ~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r 409 (452)
.|+.++++.+.++|+++|-.. .+...||.++.+..
T Consensus 139 ~l~~~~~~~~~tiii~sh~~~-------------------~~~~~~d~~~~l~~ 173 (180)
T cd03214 139 LLRRLARERGKTVVMVLHDLN-------------------LAARYADRVILLKD 173 (180)
T ss_pred HHHHHHHhcCCEEEEEeCCHH-------------------HHHHhCCEEEEEEC
Confidence 788887776889999887432 24567898888864
No 128
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.77 E-value=0.00049 Score=66.77 Aligned_cols=35 Identities=17% Similarity=0.222 Sum_probs=29.1
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++--
T Consensus 8 ~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl 42 (302)
T TIGR01188 8 AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTL 42 (302)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46666456899999999999999999999877653
No 129
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.77 E-value=0.00066 Score=67.08 Aligned_cols=164 Identities=13% Similarity=0.129 Sum_probs=80.6
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC---CCHHHHH--HHHHHHhCCCC---c-c
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME---MSGIQLA--MRMLGSVGKLD---Q-H 272 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E---~~~~~i~--~R~~a~~~~i~---~-~ 272 (452)
..|+.+.--+.+|+++.|.|++|+|||||+.-++-...-.. ..|.|-..+ ++..++. .+.++....-. . .
T Consensus 19 ~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~-G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~ 97 (343)
T PRK11153 19 HALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTS-GRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSR 97 (343)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc-eEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCC
Confidence 35666644689999999999999999999987765432112 234332111 2222221 11111110000 0 0
Q ss_pred cccc--------CCCCcch-HHHHHHHHHHHhCCCeEEEc-CCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCC
Q psy2891 273 KLRT--------GRLSSDD-WPRINDSIKKINKSQLYIDE-TPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSR 342 (452)
Q Consensus 273 ~i~~--------g~l~~~~-~~~~~~a~~~l~~~~l~i~~-~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~ 342 (452)
.+.+ ..++..+ ..++.+.++.+. ..-+... ...+|-.+-+...-...-.. +|+++++|.-..
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~g-L~~~~~~~~~~LSgGq~qRv~lAraL~~-~p~iLlLDEPts------ 169 (343)
T PRK11153 98 TVFDNVALPLELAGTPKAEIKARVTELLELVG-LSDKADRYPAQLSGGQKQRVAIARALAS-NPKVLLCDEATS------ 169 (343)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CchhhhCChhhCCHHHHHHHHHHHHHHc-CCCEEEEeCCcc------
Confidence 0000 0111111 122233333221 1111111 23466555443322222223 499999998532
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCC
Q psy2891 343 GENRATEISEISRNLKGLAKEINCPILALSQLN 375 (452)
Q Consensus 343 ~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~ 375 (452)
+-+. .....+.+.|+.++++.+.+||+++|--
T Consensus 170 ~LD~-~~~~~l~~~L~~l~~~~g~tiilvtH~~ 201 (343)
T PRK11153 170 ALDP-ATTRSILELLKDINRELGLTIVLITHEM 201 (343)
T ss_pred cCCH-HHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 1222 2345777888888888899999998843
No 130
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.77 E-value=5.3e-05 Score=63.45 Aligned_cols=32 Identities=22% Similarity=0.452 Sum_probs=26.3
Q ss_pred EEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 217 IIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 217 ~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
++|.|+||+|||+++..+|... +.+++.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l----~~~~~~i~~~ 32 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL----GFPFIEIDGS 32 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT----TSEEEEEETT
T ss_pred CEEECcCCCCeeHHHHHHHhhc----cccccccccc
Confidence 5799999999999999998865 5677777664
No 131
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.76 E-value=0.00025 Score=63.95 Aligned_cols=132 Identities=21% Similarity=0.218 Sum_probs=81.1
Q ss_pred CCCCcE-EEEEeCCCCChhHHHHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHH
Q psy2891 211 LQPGDL-IIVAGRPSMGKTAFSLNIGEHIAIE----NKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWP 285 (452)
Q Consensus 211 ~~~G~l-~~i~g~pg~GKT~~~l~ia~~~a~~----~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~ 285 (452)
+..|.+ ++|.|||++||||++..+|...+.. .+.+|..+.-- .++.. +.-|++...+
T Consensus 133 y~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDer---sEIag----~~~gvpq~~~----------- 194 (308)
T COG3854 133 YQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDER---SEIAG----CLNGVPQHGR----------- 194 (308)
T ss_pred HhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEecc---chhhc----cccCCchhhh-----------
Confidence 456777 8999999999999999999998764 46778877531 23332 3344443211
Q ss_pred HHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhC
Q psy2891 286 RINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEIN 365 (452)
Q Consensus 286 ~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~ 365 (452)
...+-+.|. ....+-+...++ .+ .|+++|||.+..... .-.+ . -|-+.|
T Consensus 195 ----------g~R~dVld~-cpk~~gmmmaIr----sm-~PEViIvDEIGt~~d----------~~A~----~-ta~~~G 243 (308)
T COG3854 195 ----------GRRMDVLDP-CPKAEGMMMAIR----SM-SPEVIIVDEIGTEED----------ALAI----L-TALHAG 243 (308)
T ss_pred ----------hhhhhhccc-chHHHHHHHHHH----hc-CCcEEEEeccccHHH----------HHHH----H-HHHhcC
Confidence 012222221 122233444343 34 499999999854321 1111 1 234689
Q ss_pred CcEEEEecCCcchhhcCCCCCCchhhhh
Q psy2891 366 CPILALSQLNRSLEQRQNKRPIMSDLRE 393 (452)
Q Consensus 366 i~vi~l~ql~r~~~~r~~~~p~l~dl~~ 393 (452)
+-++.++|=+.-. .-.|+|+++|+-+
T Consensus 244 Vkli~TaHG~~ie--dl~krp~lkdlv~ 269 (308)
T COG3854 244 VKLITTAHGNGIE--DLIKRPTLKDLVE 269 (308)
T ss_pred cEEEEeeccccHH--HhhcChhHHHHHh
Confidence 9999999987643 2357899999864
No 132
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.76 E-value=0.00058 Score=62.87 Aligned_cols=36 Identities=17% Similarity=0.381 Sum_probs=29.7
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 19 il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 456654468999999999999999999998887543
No 133
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.76 E-value=0.00089 Score=62.90 Aligned_cols=164 Identities=13% Similarity=0.086 Sum_probs=86.8
Q ss_pred cccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhC------CCcEEEEeCC------CCHHHHHHHHHHHhCCCCc
Q psy2891 204 LDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIEN------KLPVAIFSME------MSGIQLAMRMLGSVGKLDQ 271 (452)
Q Consensus 204 LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~------g~~vl~~s~E------~~~~~i~~R~~a~~~~i~~ 271 (452)
|+-..+-+.+|+++.|.|++|+|||||+.-++-..--.. |.++.|+.-+ ++..+....... .
T Consensus 15 l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~---~--- 88 (246)
T cd03237 15 LEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITK---D--- 88 (246)
T ss_pred EEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhh---h---
Confidence 333345688999999999999999999987765432112 2345554322 222222211100 0
Q ss_pred cccccCCCCcchHHHHHHHHHHHhCCCeEEE-cCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHH
Q psy2891 272 HKLRTGRLSSDDWPRINDSIKKINKSQLYID-ETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEI 350 (452)
Q Consensus 272 ~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~-~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~ 350 (452)
...... ...+..+.+. ..-... ....+|-.+.+...-...-.. +++++++|.-..- -+. ...
T Consensus 89 ------~~~~~~--~~~~~l~~l~-l~~~~~~~~~~LSgGe~qrv~iaraL~~-~p~llllDEPt~~------LD~-~~~ 151 (246)
T cd03237 89 ------FYTHPY--FKTEIAKPLQ-IEQILDREVPELSGGELQRVAIAACLSK-DADIYLLDEPSAY------LDV-EQR 151 (246)
T ss_pred ------ccccHH--HHHHHHHHcC-CHHHhhCChhhCCHHHHHHHHHHHHHhc-CCCEEEEeCCccc------CCH-HHH
Confidence 000000 1112222221 110111 123455554433322211222 4999999985321 222 234
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEec
Q psy2891 351 SEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYR 409 (452)
Q Consensus 351 ~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r 409 (452)
..+.+.|+.++++.+.+||+++|--. .+.+.||.++.+..
T Consensus 152 ~~l~~~l~~~~~~~~~tiiivsHd~~-------------------~~~~~~d~i~~l~~ 191 (246)
T cd03237 152 LMASKVIRRFAENNEKTAFVVEHDII-------------------MIDYLADRLIVFEG 191 (246)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-------------------HHHHhCCEEEEEcC
Confidence 56778888888888999999988432 24567888888854
No 134
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.76 E-value=0.0005 Score=63.37 Aligned_cols=104 Identities=16% Similarity=0.223 Sum_probs=63.7
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHh-CCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIE-NKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKI 294 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~-~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l 294 (452)
.+.|.|++|+|||.|+..++..+... .+.+|+|++.+ +....+..... .
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~----~f~~~~~~~~~--------~------------------ 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAE----EFIREFADALR--------D------------------ 85 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHH----HHHHHHHHHHH--------T------------------
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHH----HHHHHHHHHHH--------c------------------
Confidence 47899999999999999998887543 46889999876 34444432110 0
Q ss_pred hCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecC
Q psy2891 295 NKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQL 374 (452)
Q Consensus 295 ~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql 374 (452)
-.+++++.. +...++++||.++.+... ..++ ..+..-+ +-..+.|.++|+++..
T Consensus 86 ------------~~~~~~~~~-------~~~~DlL~iDDi~~l~~~----~~~q--~~lf~l~-n~~~~~~k~li~ts~~ 139 (219)
T PF00308_consen 86 ------------GEIEEFKDR-------LRSADLLIIDDIQFLAGK----QRTQ--EELFHLF-NRLIESGKQLILTSDR 139 (219)
T ss_dssp ------------TSHHHHHHH-------HCTSSEEEEETGGGGTTH----HHHH--HHHHHHH-HHHHHTTSEEEEEESS
T ss_pred ------------ccchhhhhh-------hhcCCEEEEecchhhcCc----hHHH--HHHHHHH-HHHHhhCCeEEEEeCC
Confidence 112233322 225999999999988642 1221 2333333 3334678899998865
Q ss_pred C
Q psy2891 375 N 375 (452)
Q Consensus 375 ~ 375 (452)
.
T Consensus 140 ~ 140 (219)
T PF00308_consen 140 P 140 (219)
T ss_dssp -
T ss_pred C
Confidence 4
No 135
>PRK08727 hypothetical protein; Validated
Probab=97.76 E-value=0.00028 Score=65.69 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=31.7
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
..++|.|+||+|||.++..++..+. +.|.+|.|++.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~-~~~~~~~y~~~ 77 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAE-QAGRSSAYLPL 77 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEEeH
Confidence 4599999999999999999988875 57899999985
No 136
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.75 E-value=0.00038 Score=63.16 Aligned_cols=166 Identities=14% Similarity=0.222 Sum_probs=93.9
Q ss_pred ccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC----CHHHHHHHHHHHhC----
Q psy2891 196 GISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM----SGIQLAMRMLGSVG---- 267 (452)
Q Consensus 196 ~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~----~~~~i~~R~~a~~~---- 267 (452)
.+|.|-..|+.+.--+++|+++.|.|++|+|||||+..+..-. .....-+++..+. ...++ .++.....
T Consensus 12 ~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~--d~t~G~i~~~g~~i~~~~~k~l-r~~r~~iGmIfQ 88 (258)
T COG3638 12 TYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLV--DPTSGEILFNGVQITKLKGKEL-RKLRRDIGMIFQ 88 (258)
T ss_pred ecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhccc--CCCcceEEecccchhccchHHH-HHHHHhceeEec
Confidence 3556777888886679999999999999999999999887732 2222244444432 21211 12211110
Q ss_pred CCCc-------cccc-------------cCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHH--HHHHHHHHHHHcCC
Q psy2891 268 KLDQ-------HKLR-------------TGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIE--LRANSRRLSRQCGK 325 (452)
Q Consensus 268 ~i~~-------~~i~-------------~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~--i~~~i~~~~~~~~~ 325 (452)
+.++ ..+. =|-++.++..+..++.+++.=..........+|-.+ =.+.+|.+. + +
T Consensus 89 ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~-Q--~ 165 (258)
T COG3638 89 QFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALV-Q--Q 165 (258)
T ss_pred cCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHh-c--C
Confidence 0000 0000 134567776666666665532222222223344322 223444443 3 4
Q ss_pred ccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecC
Q psy2891 326 IGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQL 374 (452)
Q Consensus 326 ~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql 374 (452)
+++|.=|.-..-- +. ..-..++..|+.++++.|++||+.-|.
T Consensus 166 pkiILADEPvasL------Dp-~~a~~Vm~~l~~in~~~g~Tvi~nLH~ 207 (258)
T COG3638 166 PKIILADEPVASL------DP-ESAKKVMDILKDINQEDGITVIVNLHQ 207 (258)
T ss_pred CCEEecCCccccc------Ch-hhHHHHHHHHHHHHHHcCCEEEEEech
Confidence 8999988742211 11 123578999999999999998886653
No 137
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.75 E-value=0.0005 Score=64.00 Aligned_cols=172 Identities=10% Similarity=0.100 Sum_probs=84.2
Q ss_pred CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC-CHHHHHHHHHHHhC-------CCCcc-ccc----
Q psy2891 209 SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM-SGIQLAMRMLGSVG-------KLDQH-KLR---- 275 (452)
Q Consensus 209 gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~-~~~~i~~R~~a~~~-------~i~~~-~i~---- 275 (452)
--+.+|+++.|.|++|+|||||+.-++-..-...| .|. +..+. .......+.++... +.+.. .+.
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G-~i~-~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 97 (232)
T PRK10771 20 LTVERGERVAILGPSGAGKSTLLNLIAGFLTPASG-SLT-LNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLN 97 (232)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEE-ECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccc
Confidence 35889999999999999999999877654321122 222 22210 00000001000000 00000 000
Q ss_pred cC-CCCcchHHHHHHHHHHHhCCCeEEEc-CCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHH
Q psy2891 276 TG-RLSSDDWPRINDSIKKINKSQLYIDE-TPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEI 353 (452)
Q Consensus 276 ~g-~l~~~~~~~~~~a~~~l~~~~l~i~~-~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i 353 (452)
.+ ........++.++.+.+.-.. ++.. ...+|-.+.+...-...-.. +++++++|.-.. +-+. .....+
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~-~p~lllLDEP~~------gLD~-~~~~~~ 168 (232)
T PRK10771 98 PGLKLNAAQREKLHAIARQMGIED-LLARLPGQLSGGQRQRVALARCLVR-EQPILLLDEPFS------ALDP-ALRQEM 168 (232)
T ss_pred cccCCCHHHHHHHHHHHHHcCcHH-HHhCCcccCCHHHHHHHHHHHHHhc-CCCEEEEeCCcc------cCCH-HHHHHH
Confidence 00 011112223333333321101 1111 22456555443322211223 499999998532 1222 233467
Q ss_pred HHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecC
Q psy2891 354 SRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRD 410 (452)
Q Consensus 354 ~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~ 410 (452)
.+.|+.++++.+.+||+++|-.. .+.+.+|.++.+...
T Consensus 169 ~~~l~~~~~~~~~tiii~sH~~~-------------------~~~~~~d~i~~l~~g 206 (232)
T PRK10771 169 LTLVSQVCQERQLTLLMVSHSLE-------------------DAARIAPRSLVVADG 206 (232)
T ss_pred HHHHHHHHHhcCCEEEEEECCHH-------------------HHHHhCCEEEEEECC
Confidence 77888888877889999887432 255678888888653
No 138
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.75 E-value=0.00062 Score=63.13 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=29.3
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 25 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred EEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 455554458899999999999999999998887643
No 139
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.75 E-value=0.00023 Score=68.20 Aligned_cols=42 Identities=21% Similarity=0.433 Sum_probs=36.6
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHhC-CCcEEEEeCCC
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIEN-KLPVAIFSMEM 253 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~-g~~vl~~s~E~ 253 (452)
.+|.+++|+|++|+||||++..+|..++.+. +.+|.+++++.
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 4577999999999999999999999987643 48999999885
No 140
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.75 E-value=0.0013 Score=61.17 Aligned_cols=176 Identities=14% Similarity=0.119 Sum_probs=86.9
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHH-HHHHHHHHHhCCCCccccccC-C--
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGI-QLAMRMLGSVGKLDQHKLRTG-R-- 278 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~-~i~~R~~a~~~~i~~~~i~~g-~-- 278 (452)
.|+.+.--+.+|+.+.|.|++|+|||||+.-++-..-...| .|. +..+.-.. ....+.++.... +.. +..+ .
T Consensus 15 il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G-~i~-~~g~~~~~~~~~~~~i~~~~q-~~~-~~~~~t~~ 90 (232)
T cd03300 15 ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSG-EIL-LDGKDITNLPPHKRPVNTVFQ-NYA-LFPHLTVF 90 (232)
T ss_pred eeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEE-ECCEEcCcCChhhcceEEEec-ccc-cCCCCcHH
Confidence 34444335889999999999999999999888765422222 233 32210000 000111110000 000 0000 0
Q ss_pred -----------CCcc-hHHHHHHHHHHHhCCCeEEEc-CCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCC
Q psy2891 279 -----------LSSD-DWPRINDSIKKINKSQLYIDE-TPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGEN 345 (452)
Q Consensus 279 -----------l~~~-~~~~~~~a~~~l~~~~l~i~~-~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~ 345 (452)
.... ...++..+.+.+. ..-+... ...+|..+.+...-...-.. +++++++|.-.. +.+
T Consensus 91 ~nl~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~lS~G~~qrl~laral~~-~p~llllDEP~~------gLD 162 (232)
T cd03300 91 ENIAFGLRLKKLPKAEIKERVAEALDLVQ-LEGYANRKPSQLSGGQQQRVAIARALVN-EPKVLLLDEPLG------ALD 162 (232)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcC-CchhhcCChhhCCHHHHHHHHHHHHHhc-CCCEEEEcCCcc------cCC
Confidence 0111 0112222222211 1111111 13456555544322222222 599999998532 122
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecC
Q psy2891 346 RATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRD 410 (452)
Q Consensus 346 ~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~ 410 (452)
. .....+.+.|+.++++.+.+||+++|-.. .+...+|.++.+...
T Consensus 163 ~-~~~~~l~~~l~~~~~~~~~tiii~sh~~~-------------------~~~~~~d~i~~l~~G 207 (232)
T cd03300 163 L-KLRKDMQLELKRLQKELGITFVFVTHDQE-------------------EALTMSDRIAVMNKG 207 (232)
T ss_pred H-HHHHHHHHHHHHHHHHcCCEEEEEeCCHH-------------------HHHHhcCEEEEEECC
Confidence 2 23346777788887777999999987432 245678988888653
No 141
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.75 E-value=0.00063 Score=62.01 Aligned_cols=35 Identities=26% Similarity=0.467 Sum_probs=28.9
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-.
T Consensus 15 ~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45555445899999999999999999999877754
No 142
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.74 E-value=0.00072 Score=63.11 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=28.7
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+.+.|.|++|+|||||+.-++-.
T Consensus 36 il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35555445889999999999999999999888754
No 143
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.74 E-value=0.00043 Score=65.84 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=29.1
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-.
T Consensus 26 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 45665456899999999999999999999877754
No 144
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.74 E-value=0.0011 Score=60.77 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=29.1
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+.+.|.|++|+|||||+.-++-..
T Consensus 15 ~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 15 VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455554458899999999999999999998887543
No 145
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.73 E-value=0.0005 Score=69.32 Aligned_cols=92 Identities=12% Similarity=0.152 Sum_probs=57.8
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhC-CCcEEEEeCCC--CHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIEN-KLPVAIFSMEM--SGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIK 292 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~-g~~vl~~s~E~--~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~ 292 (452)
.++|.|+||+|||+++..++.++.... +..++|+++-. +...+..+++....+.+.
T Consensus 57 ~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~--------------------- 115 (394)
T PRK00411 57 NVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPP--------------------- 115 (394)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCC---------------------
Confidence 468999999999999999998875322 46788887642 334455555443322110
Q ss_pred HHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhc
Q psy2891 293 KINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMS 338 (452)
Q Consensus 293 ~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~ 338 (452)
.....+..++...+.......++.-+||||.++.+.
T Consensus 116 ----------~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~ 151 (394)
T PRK00411 116 ----------PSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLF 151 (394)
T ss_pred ----------CCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhh
Confidence 012234455555554444433446789999999886
No 146
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.73 E-value=0.00066 Score=62.27 Aligned_cols=35 Identities=20% Similarity=0.425 Sum_probs=29.0
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-.
T Consensus 14 ~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 45655446899999999999999999999877654
No 147
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.73 E-value=0.00015 Score=67.18 Aligned_cols=180 Identities=13% Similarity=0.108 Sum_probs=96.7
Q ss_pred ccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC-----CHHHHHHHHHHHhCCCCcccc-
Q psy2891 201 FFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM-----SGIQLAMRMLGSVGKLDQHKL- 274 (452)
Q Consensus 201 ~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~-----~~~~i~~R~~a~~~~i~~~~i- 274 (452)
-+.|+.+.-.+.+|+.++|.|++|+||||++..++--.- .....| ++.... +..++..+. .....-+-..+
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~-p~~G~v-~~~g~~~~~~~~~~~~~~~v-G~VfQnpd~q~~ 93 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK-PTSGEV-LVDGLDTSSEKSLLELRQKV-GLVFQNPDDQLF 93 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc-CCCCEE-EECCeeccchhhHHHhhcce-EEEEECcccccc
Confidence 355666656799999999999999999999988775442 222234 443322 222222221 10000010001
Q ss_pred ------------ccCCCCcch-HHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCC
Q psy2891 275 ------------RTGRLSSDD-WPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANS 341 (452)
Q Consensus 275 ------------~~g~l~~~~-~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~ 341 (452)
.+-.++.++ ..++.++...+.-..+.-.....+|-.+-+..+-.-.-.. +|+++|+|--+..-.
T Consensus 94 ~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~-~P~iliLDEPta~LD-- 170 (235)
T COG1122 94 GPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAM-GPEILLLDEPTAGLD-- 170 (235)
T ss_pred cCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHc-CCCEEEEcCCCCCCC--
Confidence 111233333 3345555544432222111111223222222111111123 499999998654332
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecC
Q psy2891 342 RGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRD 410 (452)
Q Consensus 342 ~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~ 410 (452)
......+++.++++.++.+.+||+++|--. .+...||.++.+...
T Consensus 171 -----~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-------------------~~~~~ad~v~vl~~G 215 (235)
T COG1122 171 -----PKGRRELLELLKKLKEEGGKTIIIVTHDLE-------------------LVLEYADRVVVLDDG 215 (235)
T ss_pred -----HHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-------------------HHHhhCCEEEEEECC
Confidence 233467888999999998999999887321 356678999998654
No 148
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.72 E-value=0.0011 Score=63.25 Aligned_cols=176 Identities=13% Similarity=0.151 Sum_probs=87.9
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC----CCHHHHH---HHHHHHhCC-------
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME----MSGIQLA---MRMLGSVGK------- 268 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E----~~~~~i~---~R~~a~~~~------- 268 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-...-..| .| ++..+ .+...+. .+.++....
T Consensus 39 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G-~i-~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 116 (269)
T cd03294 39 GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSG-KV-LIDGQDIAAMSRKELRELRRKKISMVFQSFALLPH 116 (269)
T ss_pred EeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe-EE-EECCEEccccChhhhhhhhcCcEEEEecCcccCCC
Confidence 35555446899999999999999999999877654321122 23 33222 1111111 000100000
Q ss_pred CCccc-cc----cCCCCcc-hHHHHHHHHHHHhCCCeEEEc-CCCCCHHHHHHH--HHHHHHHcCCccEEEEcCcchhcc
Q psy2891 269 LDQHK-LR----TGRLSSD-DWPRINDSIKKINKSQLYIDE-TPSLNVIELRAN--SRRLSRQCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 269 i~~~~-i~----~g~l~~~-~~~~~~~a~~~l~~~~l~i~~-~~~~t~~~i~~~--i~~~~~~~~~~~~vvID~l~~i~~ 339 (452)
.+... +. ...+... ..+++.+.++.+. ..-+... ...+|-.+-+.. ++.+. . +++++++|.-..
T Consensus 117 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LS~Gq~qrv~lAral~--~-~p~illLDEPt~--- 189 (269)
T cd03294 117 RTVLENVAFGLEVQGVPRAEREERAAEALELVG-LEGWEHKYPDELSGGMQQRVGLARALA--V-DPDILLMDEAFS--- 189 (269)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-CHhHhhCCcccCCHHHHHHHHHHHHHh--c-CCCEEEEcCCCc---
Confidence 00000 00 0001111 1122223332221 1101111 234665554433 33332 3 499999998432
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecC
Q psy2891 340 NSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRD 410 (452)
Q Consensus 340 ~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~ 410 (452)
+-+. .....+.+.|+.++++.+.+||+++|--. .+...||.++.+...
T Consensus 190 ---~LD~-~~~~~l~~~l~~~~~~~g~tiii~tH~~~-------------------~~~~~~d~v~~l~~G 237 (269)
T cd03294 190 ---ALDP-LIRREMQDELLRLQAELQKTIVFITHDLD-------------------EALRLGDRIAIMKDG 237 (269)
T ss_pred ---cCCH-HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-------------------HHHHhcCEEEEEECC
Confidence 1222 23456777788888777899999988321 255678999888653
No 149
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.72 E-value=0.00077 Score=64.56 Aligned_cols=177 Identities=14% Similarity=0.094 Sum_probs=88.2
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC-C---CHHHHHHHHHHHhCCCCcccccc--
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME-M---SGIQLAMRMLGSVGKLDQHKLRT-- 276 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E-~---~~~~i~~R~~a~~~~i~~~~i~~-- 276 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..--..| .|. +..+ . +...+..+ ++....-+...+..
T Consensus 19 ~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G-~i~-~~g~~~~~~~~~~~~~~-i~~v~q~~~~~~~~~t 95 (277)
T PRK13652 19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSG-SVL-IRGEPITKENIREVRKF-VGLVFQNPDDQIFSPT 95 (277)
T ss_pred eeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEE-ECCEECCcCCHHHHHhh-eEEEecCccccccccc
Confidence 46666456899999999999999999999888754321122 232 2221 1 11222111 11111100000000
Q ss_pred -----------CCCCcchH-HHHHHHHHHHhCCCeEEE-cCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCC
Q psy2891 277 -----------GRLSSDDW-PRINDSIKKINKSQLYID-ETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRG 343 (452)
Q Consensus 277 -----------g~l~~~~~-~~~~~a~~~l~~~~l~i~-~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~ 343 (452)
..++.++. .++.++.+.+. ..-+.. ....+|-.+-+...-...--. +++++++|.-..-
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~LS~Gq~qrl~laraL~~-~p~llilDEPt~g------ 167 (277)
T PRK13652 96 VEQDIAFGPINLGLDEETVAHRVSSALHMLG-LEELRDRVPHHLSGGEKKRVAIAGVIAM-EPQVLVLDEPTAG------ 167 (277)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHCC-ChhHhcCCcccCCHHHHHHHHHHHHHHc-CCCEEEEeCCccc------
Confidence 01122111 12222222221 110111 123455555443322222223 4999999985321
Q ss_pred CCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecC
Q psy2891 344 ENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRD 410 (452)
Q Consensus 344 ~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~ 410 (452)
.+. .....+.+.|+.++++.+.+||+++|--. .+...||.++.+++.
T Consensus 168 LD~-~~~~~l~~~l~~l~~~~g~tvli~tH~~~-------------------~~~~~~drv~~l~~G 214 (277)
T PRK13652 168 LDP-QGVKELIDFLNDLPETYGMTVIFSTHQLD-------------------LVPEMADYIYVMDKG 214 (277)
T ss_pred CCH-HHHHHHHHHHHHHHHhcCCEEEEEecCHH-------------------HHHHhCCEEEEEECC
Confidence 121 23346777788888877899999987432 244567887777654
No 150
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.72 E-value=0.00043 Score=64.76 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=29.4
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 17 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 17 ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455554468999999999999999999998887643
No 151
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.72 E-value=0.00095 Score=62.54 Aligned_cols=35 Identities=23% Similarity=0.492 Sum_probs=28.4
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-.
T Consensus 17 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 17 ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45555445899999999999999999998877643
No 152
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.71 E-value=0.0011 Score=63.07 Aligned_cols=181 Identities=12% Similarity=0.084 Sum_probs=89.7
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC--HHHHHHHHHHHhCCCCc--------
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS--GIQLAMRMLGSVGKLDQ-------- 271 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~--~~~i~~R~~a~~~~i~~-------- 271 (452)
+.|+.+.--+.+|+++.|.|++|+|||||+.-++-...-..| .|.|..-+.+ ......+.++....-+.
T Consensus 27 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t 105 (267)
T PRK15112 27 EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSG-ELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQR 105 (267)
T ss_pred ceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCC-EEEECCEECCCCchhhHhccEEEEecCchhhcCcchh
Confidence 356666556899999999999999999998887754421122 2333211111 01111111110000000
Q ss_pred -c-cc----c-cCCCCcch-HHHHHHHHHHHhCCCeEEE-cCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCC
Q psy2891 272 -H-KL----R-TGRLSSDD-WPRINDSIKKINKSQLYID-ETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSR 342 (452)
Q Consensus 272 -~-~i----~-~g~l~~~~-~~~~~~a~~~l~~~~l~i~-~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~ 342 (452)
. .+ . ...+...+ .+++.++++.+.-.+-... ....+|-.+.+...-...-.. +++++++|.-..
T Consensus 106 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~-~p~lllLDEPt~------ 178 (267)
T PRK15112 106 ISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALIL-RPKVIIADEALA------ 178 (267)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHh-CCCEEEEcCCcc------
Confidence 0 00 0 00111111 1223333333211011111 123456555443322222223 499999998532
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecC
Q psy2891 343 GENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRD 410 (452)
Q Consensus 343 ~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~ 410 (452)
+-+. .....+.+.|+.++++.+.+||+++|--. .+...||.++.|...
T Consensus 179 ~LD~-~~~~~l~~~l~~~~~~~g~tviivsH~~~-------------------~~~~~~d~i~~l~~G 226 (267)
T PRK15112 179 SLDM-SMRSQLINLMLELQEKQGISYIYVTQHLG-------------------MMKHISDQVLVMHQG 226 (267)
T ss_pred cCCH-HHHHHHHHHHHHHHHHcCcEEEEEeCCHH-------------------HHHHhcCEEEEEECC
Confidence 1222 23456777888888888999999887421 245568888888643
No 153
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.71 E-value=0.0011 Score=61.59 Aligned_cols=60 Identities=10% Similarity=0.087 Sum_probs=42.3
Q ss_pred CccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhcee
Q psy2891 325 KIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVI 404 (452)
Q Consensus 325 ~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~v 404 (452)
+++++++|.-.. +-+. .....+.+.|+.++++.+.+||+++|--. .+.+.||.+
T Consensus 132 ~p~lllLDEPt~------gLD~-~~~~~l~~~l~~~~~~~~~tii~~sH~~~-------------------~~~~~~d~v 185 (230)
T TIGR01184 132 RPKVLLLDEPFG------ALDA-LTRGNLQEELMQIWEEHRVTVLMVTHDVD-------------------EALLLSDRV 185 (230)
T ss_pred CCCEEEEcCCCc------CCCH-HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-------------------HHHHhcCEE
Confidence 499999998532 1122 23457778888888888999999988321 356778999
Q ss_pred EEEecC
Q psy2891 405 LFIYRD 410 (452)
Q Consensus 405 l~l~r~ 410 (452)
+.+.+.
T Consensus 186 ~~l~~G 191 (230)
T TIGR01184 186 VMLTNG 191 (230)
T ss_pred EEEeCC
Confidence 998654
No 154
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.71 E-value=0.0002 Score=68.91 Aligned_cols=37 Identities=16% Similarity=0.402 Sum_probs=31.5
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
+.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~ 57 (286)
T PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALL 57 (286)
T ss_pred CceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4677775568999999999999999999999887654
No 155
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.71 E-value=0.00065 Score=62.88 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=29.2
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+.+.|.|++|+|||||+.-++-..
T Consensus 37 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455554458999999999999999999998887643
No 156
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.71 E-value=0.00089 Score=65.96 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=30.4
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
..|+.+.--+.+|+++.|.|++|+||||++.-++-..
T Consensus 55 ~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~ 91 (340)
T PRK13536 55 AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMT 91 (340)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3566664458999999999999999999998887643
No 157
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.70 E-value=0.001 Score=63.06 Aligned_cols=41 Identities=20% Similarity=0.227 Sum_probs=36.4
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS 254 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~ 254 (452)
+|+.+.+.|++|+|||+++..++..+. ..+.+|.+++.+-.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~-~~~~~v~~i~~D~~ 114 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFH-GKKKTVGFITTDHS 114 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEecCCC
Confidence 789999999999999999999998875 46789999998854
No 158
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.70 E-value=0.0011 Score=62.08 Aligned_cols=176 Identities=14% Similarity=0.175 Sum_probs=88.2
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC----CCHHHHHHHHHHHhCCC-------Cc
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME----MSGIQLAMRMLGSVGKL-------DQ 271 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E----~~~~~i~~R~~a~~~~i-------~~ 271 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..-...| .|. +..+ .+...+. +.++....- +.
T Consensus 16 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~-~~g~~~~~~~~~~~~-~~i~~~~q~~~~~~~~tv 92 (242)
T cd03295 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSG-EIF-IDGEDIREQDPVELR-RKIGYVIQQIGLFPHMTV 92 (242)
T ss_pred EeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEE-ECCeEcCcCChHHhh-cceEEEccCccccCCCcH
Confidence 45555446899999999999999999999877754321122 233 3222 1122221 111111100 00
Q ss_pred c-ccccC----CCC-cchHHHHHHHHHHHhCCC-eEEEc-CCCCCHHHHHHH--HHHHHHHcCCccEEEEcCcchhccCC
Q psy2891 272 H-KLRTG----RLS-SDDWPRINDSIKKINKSQ-LYIDE-TPSLNVIELRAN--SRRLSRQCGKIGVIIIDYLQLMSANS 341 (452)
Q Consensus 272 ~-~i~~g----~l~-~~~~~~~~~a~~~l~~~~-l~i~~-~~~~t~~~i~~~--i~~~~~~~~~~~~vvID~l~~i~~~~ 341 (452)
. .+..+ ... .+...++.+..+.+.-.+ -+... ...+|-.+-+.. ++.+. . +++++++|.-..
T Consensus 93 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~--~-~p~llllDEPt~----- 164 (242)
T cd03295 93 EENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALA--A-DPPLLLMDEPFG----- 164 (242)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHh--c-CCCEEEecCCcc-----
Confidence 0 00000 011 111122233333321111 01111 234555544332 33332 3 499999998532
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecC
Q psy2891 342 RGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRD 410 (452)
Q Consensus 342 ~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~ 410 (452)
+-+. .....+.+.|+.++++.+.+||+++|--. .+...||.++.|.+.
T Consensus 165 -~LD~-~~~~~l~~~L~~~~~~~g~tvii~sH~~~-------------------~~~~~~d~i~~l~~G 212 (242)
T cd03295 165 -ALDP-ITRDQLQEEFKRLQQELGKTIVFVTHDID-------------------EAFRLADRIAIMKNG 212 (242)
T ss_pred -cCCH-HHHHHHHHHHHHHHHHcCCEEEEEecCHH-------------------HHHHhCCEEEEEECC
Confidence 1222 23456777888888777889999887322 245678988888653
No 159
>PRK08116 hypothetical protein; Validated
Probab=97.70 E-value=0.00079 Score=64.01 Aligned_cols=35 Identities=20% Similarity=0.329 Sum_probs=31.0
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
-++|.|+||+|||.|+..++..+.. +|.+|+|++.
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~-~~~~v~~~~~ 150 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIE-KGVPVIFVNF 150 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEEH
Confidence 4889999999999999999999864 5899999974
No 160
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.70 E-value=0.0006 Score=64.26 Aligned_cols=151 Identities=17% Similarity=0.209 Sum_probs=78.3
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCC-------CcEEEEeCCCCHHH----HHHHHHHHhCCCCc
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENK-------LPVAIFSMEMSGIQ----LAMRMLGSVGKLDQ 271 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g-------~~vl~~s~E~~~~~----i~~R~~a~~~~i~~ 271 (452)
.|+.+.--+.+|+.+.|.|++|+|||||+.-++-......| ..+.|+.-+..... .....+. .
T Consensus 19 vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~----~-- 92 (251)
T PRK09544 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLR----L-- 92 (251)
T ss_pred EEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHh----c--
Confidence 45555445899999999999999999999877754321122 23555543311100 0111110 0
Q ss_pred cccccCCCCcchHHHHHHHHHHHhCCCeEEE-cCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHH
Q psy2891 272 HKLRTGRLSSDDWPRINDSIKKINKSQLYID-ETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEI 350 (452)
Q Consensus 272 ~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~-~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~ 350 (452)
. ..... .++..+.+.+.-.. +++ ....+|-.+.+...-...-.. +++++++|.-..- -+. ...
T Consensus 93 ---~-~~~~~---~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qrv~laral~~-~p~lllLDEPt~~------LD~-~~~ 156 (251)
T PRK09544 93 ---R-PGTKK---EDILPALKRVQAGH-LIDAPMQKLSGGETQRVLLARALLN-RPQLLVLDEPTQG------VDV-NGQ 156 (251)
T ss_pred ---c-ccccH---HHHHHHHHHcCChH-HHhCChhhCCHHHHHHHHHHHHHhc-CCCEEEEeCCCcC------CCH-HHH
Confidence 0 01111 22333333321101 111 123455555443322222223 4999999985321 222 233
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCC
Q psy2891 351 SEISRNLKGLAKEINCPILALSQLN 375 (452)
Q Consensus 351 ~~i~~~Lk~lA~~~~i~vi~l~ql~ 375 (452)
..+.+.|+.++++.+.+||+++|--
T Consensus 157 ~~l~~~L~~~~~~~g~tiiivsH~~ 181 (251)
T PRK09544 157 VALYDLIDQLRRELDCAVLMVSHDL 181 (251)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCH
Confidence 4677788888887799999998854
No 161
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.69 E-value=0.0015 Score=62.09 Aligned_cols=177 Identities=15% Similarity=0.136 Sum_probs=89.5
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC----CCHHHH--HHHHHHHhCCCCcccccc
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME----MSGIQL--AMRMLGSVGKLDQHKLRT 276 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E----~~~~~i--~~R~~a~~~~i~~~~i~~ 276 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..-- ....|. +..+ .+..+. ..+.++....-+...+..
T Consensus 26 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~i~-~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 103 (265)
T TIGR02769 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP-AQGTVS-FRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNP 103 (265)
T ss_pred EeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEE-ECCEEccccCHHHHHHHhhceEEEecChhhhcCC
Confidence 46666445899999999999999999999877654321 122233 3222 112211 111111111100000000
Q ss_pred ---------------CCCCc-chHHHHHHHHHHHhCCCeEEE-cCCCCCHHHHHHH--HHHHHHHcCCccEEEEcCcchh
Q psy2891 277 ---------------GRLSS-DDWPRINDSIKKINKSQLYID-ETPSLNVIELRAN--SRRLSRQCGKIGVIIIDYLQLM 337 (452)
Q Consensus 277 ---------------g~l~~-~~~~~~~~a~~~l~~~~l~i~-~~~~~t~~~i~~~--i~~~~~~~~~~~~vvID~l~~i 337 (452)
..+.. ....++.++++.+.-...... ....+|-.+.+.. ++.+. . +++++++|.-..
T Consensus 104 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~--~-~p~illLDEPt~- 179 (265)
T TIGR02769 104 RMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALA--V-KPKLIVLDEAVS- 179 (265)
T ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHh--c-CCCEEEEeCCcc-
Confidence 01111 112233333333311011111 1234555444332 33332 3 499999998532
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecC
Q psy2891 338 SANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRD 410 (452)
Q Consensus 338 ~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~ 410 (452)
+-+. .....+.+.|+.++++.+.+||+++|--. .+...||.++.|.+.
T Consensus 180 -----~LD~-~~~~~l~~~l~~~~~~~g~tiiivsH~~~-------------------~~~~~~d~i~~l~~G 227 (265)
T TIGR02769 180 -----NLDM-VLQAVILELLRKLQQAFGTAYLFITHDLR-------------------LVQSFCQRVAVMDKG 227 (265)
T ss_pred -----cCCH-HHHHHHHHHHHHHHHhcCcEEEEEeCCHH-------------------HHHHHhcEEEEEeCC
Confidence 1222 22346778888888877899999988422 245678999888654
No 162
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.69 E-value=0.00044 Score=66.46 Aligned_cols=178 Identities=16% Similarity=0.200 Sum_probs=90.0
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC------HHHHHHHHHHHhCCCCccccc
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS------GIQLAMRMLGSVGKLDQHKLR 275 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~------~~~i~~R~~a~~~~i~~~~i~ 275 (452)
..|+.+.--+.+|+++.|.|++|+|||||+.-++-..-...| .|. +..+.. ..++. +.++....-+...+.
T Consensus 20 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G-~i~-i~g~~~~~~~~~~~~~~-~~ig~v~q~~~~~~~ 96 (283)
T PRK13636 20 HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSG-RIL-FDGKPIDYSRKGLMKLR-ESVGMVFQDPDNQLF 96 (283)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcc-EEE-ECCEECCCCcchHHHHH-hhEEEEecCcchhhc
Confidence 356666445899999999999999999999887764321122 232 222210 11111 111110000000000
Q ss_pred c-------------CCCCcch-HHHHHHHHHHHhCCCeEEE-cCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccC
Q psy2891 276 T-------------GRLSSDD-WPRINDSIKKINKSQLYID-ETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSAN 340 (452)
Q Consensus 276 ~-------------g~l~~~~-~~~~~~a~~~l~~~~l~i~-~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~ 340 (452)
. ..++..+ ..++..+.+.+.=.. +.. ....+|-.+.+...-...-.. +|+++++|....-
T Consensus 97 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LS~G~~qrl~laraL~~-~p~lLilDEPt~g--- 171 (283)
T PRK13636 97 SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEH-LKDKPTHCLSFGQKKRVAIAGVLVM-EPKVLVLDEPTAG--- 171 (283)
T ss_pred cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh-hhhCCcccCCHHHHHHHHHHHHHHc-CCCEEEEeCCccC---
Confidence 0 0112222 233333333331111 111 123456555443322222223 4999999985421
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecC
Q psy2891 341 SRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRD 410 (452)
Q Consensus 341 ~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~ 410 (452)
-+ ......+...|+.++++.+.+|++++|--. .+.+.||.++.+...
T Consensus 172 ---LD-~~~~~~l~~~l~~l~~~~g~tillvsH~~~-------------------~~~~~~dri~~l~~G 218 (283)
T PRK13636 172 ---LD-PMGVSEIMKLLVEMQKELGLTIIIATHDID-------------------IVPLYCDNVFVMKEG 218 (283)
T ss_pred ---CC-HHHHHHHHHHHHHHHHhCCCEEEEEecCHH-------------------HHHHhCCEEEEEECC
Confidence 22 223456777888888888999999987432 244567888877644
No 163
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.69 E-value=0.00094 Score=61.23 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=29.3
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+.+.|.|++|+|||||+.-++-..
T Consensus 16 ~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 16 ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455554458999999999999999999998887643
No 164
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.69 E-value=0.00095 Score=61.04 Aligned_cols=35 Identities=26% Similarity=0.287 Sum_probs=28.9
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-.
T Consensus 15 ~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 15 ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45555445899999999999999999999888754
No 165
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.69 E-value=0.0012 Score=62.55 Aligned_cols=174 Identities=13% Similarity=0.082 Sum_probs=86.0
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCC----CccccccC-
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKL----DQHKLRTG- 277 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i----~~~~i~~g- 277 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-...-..| .|. +..+ +...+. +.++....- +...+.+.
T Consensus 27 il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G-~i~-~~g~-~~~~~~-~~i~~v~q~~~l~~~~tv~enl 102 (257)
T PRK11247 27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAG-ELL-AGTA-PLAEAR-EDTRLMFQDARLLPWKKVIDNV 102 (257)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe-EEE-ECCE-EHHHhh-CceEEEecCccCCCCCcHHHHH
Confidence 45555445889999999999999999999877754321122 232 2221 111111 101100000 00000000
Q ss_pred --CCCcchHHHHHHHHHHHhCCCeEEEc-CCCCCHHHHHH--HHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHH
Q psy2891 278 --RLSSDDWPRINDSIKKINKSQLYIDE-TPSLNVIELRA--NSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISE 352 (452)
Q Consensus 278 --~l~~~~~~~~~~a~~~l~~~~l~i~~-~~~~t~~~i~~--~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~ 352 (452)
.+......++.++++.+. ..-+... ...+|-.+-+. .++.+. . +++++++|--.. +-+. .....
T Consensus 103 ~~~~~~~~~~~~~~~l~~~g-l~~~~~~~~~~LSgGqkqrl~laraL~--~-~p~lllLDEPt~------~LD~-~~~~~ 171 (257)
T PRK11247 103 GLGLKGQWRDAALQALAAVG-LADRANEWPAALSGGQKQRVALARALI--H-RPGLLLLDEPLG------ALDA-LTRIE 171 (257)
T ss_pred HhcccchHHHHHHHHHHHcC-ChhHhcCChhhCCHHHHHHHHHHHHHh--c-CCCEEEEeCCCC------CCCH-HHHHH
Confidence 000000112222222221 1101111 22455444332 333332 2 499999998532 1222 23456
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecC
Q psy2891 353 ISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRD 410 (452)
Q Consensus 353 i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~ 410 (452)
+.+.|+.++++.+.+||+++|--. .+...||.++.+...
T Consensus 172 l~~~L~~~~~~~~~tviivsHd~~-------------------~~~~~~d~i~~l~~G 210 (257)
T PRK11247 172 MQDLIESLWQQHGFTVLLVTHDVS-------------------EAVAMADRVLLIEEG 210 (257)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHH-------------------HHHHhCCEEEEEECC
Confidence 777888888888999999988432 245567888777643
No 166
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.68 E-value=0.0015 Score=56.42 Aligned_cols=153 Identities=16% Similarity=0.252 Sum_probs=90.3
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHH-------HHHHHHhCCCCccccccC-----
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLA-------MRMLGSVGKLDQHKLRTG----- 277 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~-------~R~~a~~~~i~~~~i~~g----- 277 (452)
-+.||++.-|.|.+|+||||++..+..+.+-.. ..|.|-.-...+.++. .|++....|+-..+-++|
T Consensus 28 ~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~-G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~V 106 (258)
T COG4107 28 DLYPGEVLGIVGESGSGKTTLLKCISGRLTPDA-GTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQV 106 (258)
T ss_pred eecCCcEEEEEecCCCcHHhHHHHHhcccCCCC-CeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeee
Confidence 589999999999999999999999988886543 4577766443333322 233333333322221111
Q ss_pred ----CCCc-------chHHHHH-HHHHHHhCC---CeEEEcCCC-CC--HHHHHHHHHHHHHHcCCccEEEEcCcchhcc
Q psy2891 278 ----RLSS-------DDWPRIN-DSIKKINKS---QLYIDETPS-LN--VIELRANSRRLSRQCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 278 ----~l~~-------~~~~~~~-~a~~~l~~~---~l~i~~~~~-~t--~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~ 339 (452)
++.+ ..+..+. .|.+|+.+- .-.|+|.|. ++ +.+-...++.+.. .|.+||.|.-+
T Consensus 107 SAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt---~PrLvfMDEPT---- 179 (258)
T COG4107 107 SAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVT---RPRLVFMDEPT---- 179 (258)
T ss_pred ccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhcc---CCceEEecCCC----
Confidence 2211 1233333 445666543 345666542 33 2333333444432 48999999742
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEec
Q psy2891 340 NSRGENRATEISEISRNLKGLAKEINCPILALSQ 373 (452)
Q Consensus 340 ~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~q 373 (452)
+ .-...-.+.+..-|+.+..+++++++++.|
T Consensus 180 -G--GLDVSVQARLLDllrgLv~~l~la~viVTH 210 (258)
T COG4107 180 -G--GLDVSVQARLLDLLRGLVRELGLAVVIVTH 210 (258)
T ss_pred -C--CcchhhHHHHHHHHHHHHHhcCceEEEEec
Confidence 1 122233457788899999999999998877
No 167
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.68 E-value=0.0011 Score=61.83 Aligned_cols=35 Identities=17% Similarity=0.413 Sum_probs=29.2
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++--
T Consensus 24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred eEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 46665445899999999999999999999888754
No 168
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.68 E-value=0.00056 Score=68.74 Aligned_cols=162 Identities=17% Similarity=0.147 Sum_probs=81.3
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC---CCCHHHHHHHHHHHhCC---C----Cc
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM---EMSGIQLAMRMLGSVGK---L----DQ 271 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~---E~~~~~i~~R~~a~~~~---i----~~ 271 (452)
..|+.+.--+.+|+++.|.|++|+|||||+.-++-..--..| .|.+... .++..++..++ +.... . +.
T Consensus 17 ~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG-~I~l~G~~i~~~~~~~~~~~i-g~v~q~~~l~~~~tv 94 (402)
T PRK09536 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAG-TVLVAGDDVEALSARAASRRV-ASVPQDTSLSFEFDV 94 (402)
T ss_pred EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCc-EEEECCEEcCcCCHHHHhcce-EEEccCCCCCCCCCH
Confidence 345666446899999999999999999999888754321122 2333221 12333332221 11100 0 00
Q ss_pred cc-cccC------C---CCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCC
Q psy2891 272 HK-LRTG------R---LSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANS 341 (452)
Q Consensus 272 ~~-i~~g------~---l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~ 341 (452)
.. +.-+ . +...+.+++.++.+.+.-..+.-.....+|-.+-+...-...-.+ +++++++|.-..
T Consensus 95 ~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~-~P~iLLLDEPts----- 168 (402)
T PRK09536 95 RQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQ-ATPVLLLDEPTA----- 168 (402)
T ss_pred HHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc-CCCEEEEECCcc-----
Confidence 00 0000 1 122334445555544321111111123566555443322222223 499999998532
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecC
Q psy2891 342 RGENRATEISEISRNLKGLAKEINCPILALSQL 374 (452)
Q Consensus 342 ~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql 374 (452)
+-+.. ...++.+.|+.+++ .+.+||+++|-
T Consensus 169 -gLD~~-~~~~l~~lL~~l~~-~g~TIIivsHd 198 (402)
T PRK09536 169 -SLDIN-HQVRTLELVRRLVD-DGKTAVAAIHD 198 (402)
T ss_pred -cCCHH-HHHHHHHHHHHHHh-cCCEEEEEECC
Confidence 12222 23366777788875 58888888874
No 169
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.68 E-value=0.00089 Score=62.47 Aligned_cols=36 Identities=19% Similarity=0.418 Sum_probs=29.3
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 16 ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 455554458999999999999999999998887543
No 170
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.68 E-value=0.00075 Score=65.04 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=29.8
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++--.
T Consensus 26 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456654568999999999999999999998887543
No 171
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.67 E-value=0.0011 Score=61.10 Aligned_cols=36 Identities=19% Similarity=0.332 Sum_probs=29.3
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+.+.|.|++|+|||||+.-++--.
T Consensus 20 il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 20 AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 455554458999999999999999999998777543
No 172
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.66 E-value=0.001 Score=61.34 Aligned_cols=36 Identities=17% Similarity=0.361 Sum_probs=29.9
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 20 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456664568999999999999999999998887643
No 173
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.66 E-value=0.0011 Score=65.66 Aligned_cols=159 Identities=11% Similarity=0.149 Sum_probs=80.3
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC----CCHHHHHHHHHHHhCC-------CC
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME----MSGIQLAMRMLGSVGK-------LD 270 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E----~~~~~i~~R~~a~~~~-------i~ 270 (452)
..|+.+.--+.+|+++.|.|++|+||||++.-++--..-..| -+++..+ .++. .|-++.... .+
T Consensus 18 ~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G--~I~~~g~~i~~~~~~---~r~ig~v~Q~~~lfp~~t 92 (356)
T PRK11650 18 QVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSG--EIWIGGRVVNELEPA---DRDIAMVFQNYALYPHMS 92 (356)
T ss_pred EEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCce--EEEECCEECCCCCHH---HCCEEEEeCCccccCCCC
Confidence 456666446899999999999999999999888764321112 2222221 1111 111110000 00
Q ss_pred cc-cc----ccCCCCcchH-HHHHHHHHHHhCCCeEEEc-CCCCCHHHHHH--HHHHHHHHcCCccEEEEcCcchhccCC
Q psy2891 271 QH-KL----RTGRLSSDDW-PRINDSIKKINKSQLYIDE-TPSLNVIELRA--NSRRLSRQCGKIGVIIIDYLQLMSANS 341 (452)
Q Consensus 271 ~~-~i----~~g~l~~~~~-~~~~~a~~~l~~~~l~i~~-~~~~t~~~i~~--~i~~~~~~~~~~~~vvID~l~~i~~~~ 341 (452)
.. .+ +...++..+. .++.++.+.+.=.. +... ...+|-.+-.. .++.+. . +|+++++|.-..
T Consensus 93 v~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGq~QRvalARAL~--~-~P~llLLDEP~s----- 163 (356)
T PRK11650 93 VRENMAYGLKIRGMPKAEIEERVAEAARILELEP-LLDRKPRELSGGQRQRVAMGRAIV--R-EPAVFLFDEPLS----- 163 (356)
T ss_pred HHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChh-HhhCChhhCCHHHHHHHHHHHHHh--c-CCCEEEEeCCcc-----
Confidence 00 00 0011222221 23333333321111 1111 23455554433 333333 2 599999998431
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCc
Q psy2891 342 RGENRATEISEISRNLKGLAKEINCPILALSQLNR 376 (452)
Q Consensus 342 ~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r 376 (452)
+-+. .....+...|+.+.++.++++|+++|-..
T Consensus 164 -~LD~-~~r~~l~~~l~~l~~~~g~tii~vTHd~~ 196 (356)
T PRK11650 164 -NLDA-KLRVQMRLEIQRLHRRLKTTSLYVTHDQV 196 (356)
T ss_pred -cCCH-HHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 1122 22346677888888889999999998543
No 174
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=97.65 E-value=0.002 Score=61.44 Aligned_cols=35 Identities=20% Similarity=0.407 Sum_probs=28.8
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+.+.|.|++|+|||||+.-++-.
T Consensus 27 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 61 (268)
T PRK10419 27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGL 61 (268)
T ss_pred eEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45555446899999999999999999999877654
No 175
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.65 E-value=0.0007 Score=61.94 Aligned_cols=36 Identities=19% Similarity=0.457 Sum_probs=29.0
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 16 il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 455554458899999999999999999998777543
No 176
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.65 E-value=0.0015 Score=59.95 Aligned_cols=35 Identities=17% Similarity=0.362 Sum_probs=28.5
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-.
T Consensus 17 il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45555446899999999999999999999876653
No 177
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.64 E-value=0.00053 Score=66.96 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=32.5
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
.-+++.|+||+|||.|+..+|..+. ..|..|+|++..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~-~~g~~V~y~t~~ 220 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL-DRGKSVIYRTAD 220 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH-HCCCeEEEEEHH
Confidence 5689999999999999999999886 578999999863
No 178
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.63 E-value=0.0015 Score=64.56 Aligned_cols=159 Identities=13% Similarity=0.138 Sum_probs=79.9
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC----CCHHHHHHHHHHHhC-------CCC
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME----MSGIQLAMRMLGSVG-------KLD 270 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E----~~~~~i~~R~~a~~~-------~i~ 270 (452)
..|+.+.--+.+|+++.|.|++|+|||||+.-++--.-...| -+++..+ .+.. .|-++... +.+
T Consensus 20 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G--~I~~~g~~i~~~~~~---~r~ig~vfQ~~~lfp~~t 94 (351)
T PRK11432 20 TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEG--QIFIDGEDVTHRSIQ---QRDICMVFQSYALFPHMS 94 (351)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCce--EEEECCEECCCCCHH---HCCEEEEeCCcccCCCCC
Confidence 346666446899999999999999999999877753321122 1222211 1111 11111000 000
Q ss_pred cc-cc----ccCCCCcch-HHHHHHHHHHHhCCCeEEEc-CCCCCHHHHHH--HHHHHHHHcCCccEEEEcCcchhccCC
Q psy2891 271 QH-KL----RTGRLSSDD-WPRINDSIKKINKSQLYIDE-TPSLNVIELRA--NSRRLSRQCGKIGVIIIDYLQLMSANS 341 (452)
Q Consensus 271 ~~-~i----~~g~l~~~~-~~~~~~a~~~l~~~~l~i~~-~~~~t~~~i~~--~i~~~~~~~~~~~~vvID~l~~i~~~~ 341 (452)
.. .+ .....+..+ .+++.++.+.+.-..+ .+. ...+|-.+-.. .++.+.. +|+++++|.-..
T Consensus 95 v~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~-~~r~~~~LSgGq~QRVaLARaL~~---~P~lLLLDEP~s----- 165 (351)
T PRK11432 95 LGENVGYGLKMLGVPKEERKQRVKEALELVDLAGF-EDRYVDQISGGQQQRVALARALIL---KPKVLLFDEPLS----- 165 (351)
T ss_pred HHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchh-hcCChhhCCHHHHHHHHHHHHHHc---CCCEEEEcCCcc-----
Confidence 00 00 000122222 2233333333321111 111 23455544433 3333432 499999998421
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCc
Q psy2891 342 RGENRATEISEISRNLKGLAKEINCPILALSQLNR 376 (452)
Q Consensus 342 ~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r 376 (452)
+-+. .....+...|+.+.++.++++|+++|--.
T Consensus 166 -~LD~-~~r~~l~~~l~~l~~~~g~tii~vTHd~~ 198 (351)
T PRK11432 166 -NLDA-NLRRSMREKIRELQQQFNITSLYVTHDQS 198 (351)
T ss_pred -cCCH-HHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 1122 22346677888888889999999988543
No 179
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.63 E-value=0.0018 Score=60.17 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=28.9
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-.
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred eeccceeEecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45555445889999999999999999999888754
No 180
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.63 E-value=0.0016 Score=56.04 Aligned_cols=162 Identities=15% Similarity=0.133 Sum_probs=92.3
Q ss_pred ccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC----CHHHHHHHHHHHh-----CC
Q psy2891 198 STGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM----SGIQLAMRMLGSV-----GK 268 (452)
Q Consensus 198 ~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~----~~~~i~~R~~a~~-----~~ 268 (452)
.++-+-||.+.-.+.+|+...|.||+|+|||+|..++|.-..- .-.++||-.|. +++....+.--+. .|
T Consensus 13 a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp--~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 13 AGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISP--TSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred cCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCC--CCceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 3556677887557999999999999999999999999987653 34477777663 4455555542111 11
Q ss_pred CCc-------cccccCCCCcchHHHHHHHHHHHhCCCeEEEcCC--CCC--HHHHHHHHHHHHHHcCCccEEEEcCcchh
Q psy2891 269 LDQ-------HKLRTGRLSSDDWPRINDSIKKINKSQLYIDETP--SLN--VIELRANSRRLSRQCGKIGVIIIDYLQLM 337 (452)
Q Consensus 269 i~~-------~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~--~~t--~~~i~~~i~~~~~~~~~~~~vvID~l~~i 337 (452)
-.. ..+++... +..+..+..... ..+-++.+.+ ++| -.+..+.++.+ +++ |+++.+|.++.-
T Consensus 91 ~tVeDNlifP~~~r~rr~---dr~aa~~llar~-~l~~~~L~k~it~lSGGE~QriAliR~L--q~~-P~ILLLDE~TsA 163 (223)
T COG4619 91 DTVEDNLIFPWQIRNRRP---DRAAALDLLARF-ALPDSILTKNITELSGGEKQRIALIRNL--QFM-PKILLLDEITSA 163 (223)
T ss_pred cchhhccccchHHhccCC---ChHHHHHHHHHc-CCchhhhcchhhhccchHHHHHHHHHHh--hcC-CceEEecCchhh
Confidence 110 01111111 112222222222 1233333222 222 23455666655 465 999999998754
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCC
Q psy2891 338 SANSRGENRATEISEISRNLKGLAKEINCPILALSQLN 375 (452)
Q Consensus 338 ~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~ 375 (452)
... +....+ -..+..+.++.+++|+-+.|-.
T Consensus 164 LD~----~nkr~i---e~mi~~~v~~q~vAv~WiTHd~ 194 (223)
T COG4619 164 LDE----SNKRNI---EEMIHRYVREQNVAVLWITHDK 194 (223)
T ss_pred cCh----hhHHHH---HHHHHHHhhhhceEEEEEecCh
Confidence 432 222223 3345556668899999888854
No 181
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.63 E-value=0.0022 Score=65.66 Aligned_cols=181 Identities=15% Similarity=0.188 Sum_probs=100.0
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHh---CCCcEEEEeCC---CCHHHH---HHHHHHHhCCCCcc
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE---NKLPVAIFSME---MSGIQL---AMRMLGSVGKLDQH 272 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~---~g~~vl~~s~E---~~~~~i---~~R~~a~~~~i~~~ 272 (452)
..++.+.--+.+|+.+.|.|.+|+|||++++.+.--.-.. .+..|+|--.| .+..+. .-+-++.+..-+..
T Consensus 23 ~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~ 102 (539)
T COG1123 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMT 102 (539)
T ss_pred eeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchh
Confidence 4566664458999999999999999999999887644211 12345544322 222222 11111111111110
Q ss_pred cc---------------ccCCCCcchHHHHHHHHHHHhCC----CeEEE-cCCCCCHHHHHHHHHHHHHHcCCccEEEEc
Q psy2891 273 KL---------------RTGRLSSDDWPRINDSIKKINKS----QLYID-ETPSLNVIELRANSRRLSRQCGKIGVIIID 332 (452)
Q Consensus 273 ~i---------------~~g~l~~~~~~~~~~a~~~l~~~----~l~i~-~~~~~t~~~i~~~i~~~~~~~~~~~~vvID 332 (452)
.+ ..+..+.++ ....+.+.+..- +.... ....+|=.+-...+-.+.-.. +|+++|.|
T Consensus 103 slnP~~tIg~Qi~E~~~~h~~~~~~e--a~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~-~P~LLIaD 179 (539)
T COG1123 103 SLNPVMTIGDQIREALRLHGKGSRAE--ARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALAL-KPKLLIAD 179 (539)
T ss_pred hcCchhhHHHHHHHHHHHhccccHHH--HHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhC-CCCEEEEC
Confidence 00 001111111 122223333221 11221 123444344433333333334 59999999
Q ss_pred CcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCc
Q psy2891 333 YLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDE 411 (452)
Q Consensus 333 ~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~ 411 (452)
--+... ......++..-||.+.+++|+++|+++|-- +-+++.||.|+.+|+-+
T Consensus 180 EPTTaL-------Dvt~q~qIL~llk~l~~e~g~a~l~ITHDl-------------------~Vva~~aDrv~Vm~~G~ 232 (539)
T COG1123 180 EPTTAL-------DVTTQAQILDLLKDLQRELGMAVLFITHDL-------------------GVVAELADRVVVMYKGE 232 (539)
T ss_pred CCcccc-------CHHHHHHHHHHHHHHHHHcCcEEEEEcCCH-------------------HHHHHhcCeEEEEECCE
Confidence 865332 223346889999999999999999999832 45889999999999754
No 182
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.63 E-value=0.0014 Score=58.99 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=28.4
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGE 236 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~ 236 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-
T Consensus 22 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 22 LLNNISGYVKPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred eEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4555544589999999999999999999988874
No 183
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.62 E-value=0.0019 Score=59.80 Aligned_cols=36 Identities=19% Similarity=0.389 Sum_probs=29.4
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 20 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 20 ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred eecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455554468999999999999999999998877543
No 184
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.62 E-value=0.00045 Score=65.55 Aligned_cols=101 Identities=22% Similarity=0.283 Sum_probs=55.2
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCc-chHHHHHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSS-DDWPRINDSIKKI 294 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~-~~~~~~~~a~~~l 294 (452)
|++|+|.||+|||+++.++...+. ..+..|.+++.+. +. + +.. .+.+ ..+..+
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~-~~~~~v~~i~~~~----~~--~-------~~~-----~y~~~~~Ek~~------- 56 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLE-EKGKEVVIISDDS----LG--I-------DRN-----DYADSKKEKEA------- 56 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHH-HTT--EEEE-THH----HH----------TTS-----SS--GGGHHHH-------
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHH-hcCCEEEEEcccc----cc--c-------chh-----hhhchhhhHHH-------
Confidence 799999999999999999999886 4678999998432 11 1 100 0111 111111
Q ss_pred hCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEe
Q psy2891 295 NKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALS 372 (452)
Q Consensus 295 ~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ 372 (452)
-..+++.+.+... +-.+||+|....+.+ +=.+|..+||+++++..+++
T Consensus 57 --------------R~~l~s~v~r~ls---~~~iVI~Dd~nYiKg-------------~RYelyclAr~~~~~~c~i~ 104 (270)
T PF08433_consen 57 --------------RGSLKSAVERALS---KDTIVILDDNNYIKG-------------MRYELYCLARAYGTTFCVIY 104 (270)
T ss_dssp --------------HHHHHHHHHHHHT---T-SEEEE-S---SHH-------------HHHHHHHHHHHTT-EEEEEE
T ss_pred --------------HHHHHHHHHHhhc---cCeEEEEeCCchHHH-------------HHHHHHHHHHHcCCCEEEEE
Confidence 1234454444433 248999999876654 12367788999998876654
No 185
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.62 E-value=0.0017 Score=60.81 Aligned_cols=176 Identities=16% Similarity=0.189 Sum_probs=87.2
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC---CHHHHHHHHHHHhCCC------Cc-c
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM---SGIQLAMRMLGSVGKL------DQ-H 272 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~---~~~~i~~R~~a~~~~i------~~-~ 272 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..--..| .|.+-..+. +...+. +.++....- +. +
T Consensus 18 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~-~~i~~~~q~~~~~~~tv~e 95 (241)
T PRK14250 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEG-SILIDGVDIKTIDVIDLR-RKIGMVFQQPHLFEGTVKD 95 (241)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEEhhhcChHHhh-hcEEEEecCchhchhhHHH
Confidence 34554345889999999999999999999877754311122 233321111 111111 111100000 00 0
Q ss_pred ccccC-CCCcchHHHHHHHHHHHhCCCeE--E-E-cCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHH
Q psy2891 273 KLRTG-RLSSDDWPRINDSIKKINKSQLY--I-D-ETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRA 347 (452)
Q Consensus 273 ~i~~g-~l~~~~~~~~~~a~~~l~~~~l~--i-~-~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~ 347 (452)
.+.-+ ........++.+..+.+ .+. . . ....+|-.+-+...-...--. +++++++|.... +-+.
T Consensus 96 ~l~~~~~~~~~~~~~~~~~l~~~---~l~~~~~~~~~~~LS~G~~qrl~la~al~~-~p~llllDEPt~------~LD~- 164 (241)
T PRK14250 96 NIEYGPMLKGEKNVDVEYYLSIV---GLNKEYATRDVKNLSGGEAQRVSIARTLAN-NPEVLLLDEPTS------ALDP- 164 (241)
T ss_pred HHhcchhhcCcHHHHHHHHHHHc---CCCHHHhhCCcccCCHHHHHHHHHHHHHhc-CCCEEEEeCCcc------cCCH-
Confidence 00000 00001111222222222 221 1 1 123466555443322222223 499999998532 1222
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecC
Q psy2891 348 TEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRD 410 (452)
Q Consensus 348 ~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~ 410 (452)
.....+.+.|+.++++.+.+||+++|-.. .+...||.++.+.+.
T Consensus 165 ~~~~~l~~~l~~~~~~~g~tii~~sH~~~-------------------~~~~~~d~i~~l~~G 208 (241)
T PRK14250 165 TSTEIIEELIVKLKNKMNLTVIWITHNME-------------------QAKRIGDYTAFLNKG 208 (241)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeccHH-------------------HHHHhCCEEEEEeCC
Confidence 23456777888888777899999988432 245678999888653
No 186
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.62 E-value=0.0016 Score=64.17 Aligned_cols=42 Identities=21% Similarity=0.362 Sum_probs=36.5
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHH-HhCCCcEEEEeCCC
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIA-IENKLPVAIFSMEM 253 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a-~~~g~~vl~~s~E~ 253 (452)
.+|.++.+.||+|+||||-+.-+|+..+ .....+|.++|++-
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDt 243 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDT 243 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEecc
Confidence 4477999999999999999999999997 44568999999974
No 187
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.62 E-value=0.002 Score=61.43 Aligned_cols=36 Identities=28% Similarity=0.467 Sum_probs=29.3
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 22 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 22 IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455554458999999999999999999998777543
No 188
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.62 E-value=0.0014 Score=61.83 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=29.4
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+.+.|.|++|+|||||+.-++-..
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455554458999999999999999999998877543
No 189
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.61 E-value=0.00098 Score=66.40 Aligned_cols=88 Identities=14% Similarity=0.273 Sum_probs=54.1
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHh---CCCcEEEEeCCCCH--HHHHHHHHHHhCCCCccccccCCCCcchHHHHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIE---NKLPVAIFSMEMSG--IQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRIN 288 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~---~g~~vl~~s~E~~~--~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~ 288 (452)
+.++++.|++|+||||.+..+|..+... .|.+|++++.+--. .....+.++...|++..... ....+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~-------~~~~l~ 246 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIE-------SFKDLK 246 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeC-------cHHHHH
Confidence 4589999999999999999999887642 47899999998522 11223334444555543211 122344
Q ss_pred HHHHHHhCCCeEEEcCCCCC
Q psy2891 289 DSIKKINKSQLYIDETPSLN 308 (452)
Q Consensus 289 ~a~~~l~~~~l~i~~~~~~t 308 (452)
.++..+.+..+.+.|+++.+
T Consensus 247 ~~L~~~~~~DlVLIDTaGr~ 266 (388)
T PRK12723 247 EEITQSKDFDLVLVDTIGKS 266 (388)
T ss_pred HHHHHhCCCCEEEEcCCCCC
Confidence 44444555555555554443
No 190
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=97.61 E-value=0.0021 Score=63.10 Aligned_cols=181 Identities=13% Similarity=0.155 Sum_probs=92.3
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHh--CCCcEEEEeCC----CCHHHHHH-H--HHHHhCCCC--
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE--NKLPVAIFSME----MSGIQLAM-R--MLGSVGKLD-- 270 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~--~g~~vl~~s~E----~~~~~i~~-R--~~a~~~~i~-- 270 (452)
..|+.+.--+.+|+++.|.|++|+|||||+.-++--..-. ....|.| ..+ ++..++.. | .++....-+
T Consensus 30 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~-~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 30 TAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATF-NGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEE-CCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 4566664568999999999999999999998887543211 0223433 322 23333321 1 111111000
Q ss_pred -------ccc-c-----ccCCCCcch-HHHHHHHHHHHhCCC-e-EEE-cCCCCCHHHHHHHHHHHHHHcCCccEEEEcC
Q psy2891 271 -------QHK-L-----RTGRLSSDD-WPRINDSIKKINKSQ-L-YID-ETPSLNVIELRANSRRLSRQCGKIGVIIIDY 333 (452)
Q Consensus 271 -------~~~-i-----~~g~l~~~~-~~~~~~a~~~l~~~~-l-~i~-~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~ 333 (452)
... + ..+..+..+ ..++.+..+.+.-.+ . ++. ....+|-.+.....-...--. +++++|.|.
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~-~P~llilDE 187 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLC-RPKLLIADE 187 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHc-CCCEEEEeC
Confidence 000 0 001112111 122223333221111 0 111 123456555443322222223 499999998
Q ss_pred cchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecC
Q psy2891 334 LQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRD 410 (452)
Q Consensus 334 l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~ 410 (452)
-..- -+ ......+...|+.+.++++.++|+++|--. .+.+.||.++.|+.-
T Consensus 188 Pts~------LD-~~~~~~i~~lL~~l~~~~g~til~iTHdl~-------------------~~~~~~Dri~vm~~G 238 (330)
T PRK09473 188 PTTA------LD-VTVQAQIMTLLNELKREFNTAIIMITHDLG-------------------VVAGICDKVLVMYAG 238 (330)
T ss_pred CCcc------CC-HHHHHHHHHHHHHHHHHcCCEEEEEECCHH-------------------HHHHhCCEEEEEECC
Confidence 5322 12 223457788888888888999999987322 244567777777653
No 191
>PRK10908 cell division protein FtsE; Provisional
Probab=97.61 E-value=0.0016 Score=60.04 Aligned_cols=36 Identities=22% Similarity=0.391 Sum_probs=29.6
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 17 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 17 ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456654458999999999999999999998887543
No 192
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.61 E-value=0.0022 Score=60.39 Aligned_cols=35 Identities=26% Similarity=0.408 Sum_probs=28.9
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-.
T Consensus 18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45555446899999999999999999999877754
No 193
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=97.61 E-value=0.0015 Score=60.33 Aligned_cols=35 Identities=31% Similarity=0.514 Sum_probs=29.0
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+.+.|.|++|+|||||+.-++-.
T Consensus 20 il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~ 54 (220)
T TIGR02982 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGL 54 (220)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45555445899999999999999999999888753
No 194
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.61 E-value=0.00079 Score=65.17 Aligned_cols=42 Identities=12% Similarity=0.264 Sum_probs=34.9
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRM 262 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~ 262 (452)
-.+|.|+||+|||.++..++..++ +.|.+|.|++.. +++.++
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~-~~g~~v~~~~~~----~l~~~l 199 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELA-KKGVSSTLLHFP----EFIREL 199 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEEHH----HHHHHH
Confidence 488999999999999999999997 579999999763 444444
No 195
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.60 E-value=0.00087 Score=64.54 Aligned_cols=176 Identities=18% Similarity=0.218 Sum_probs=89.4
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC-CC-----HHHHHHHHHHHhCCCCccccc
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME-MS-----GIQLAMRMLGSVGKLDQHKLR 275 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E-~~-----~~~i~~R~~a~~~~i~~~~i~ 275 (452)
+.|+.+.--+.+|+++.|.|++|+|||||+.-++--.--..| -+++..+ .+ ...+. +.++....-+...+.
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G--~i~~~g~~~~~~~~~~~~~~-~~ig~v~q~~~~~~~ 97 (287)
T PRK13637 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG--KIIIDGVDITDKKVKLSDIR-KKVGLVFQYPEYQLF 97 (287)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCcc--EEEECCEECCCcCccHHHHh-hceEEEecCchhccc
Confidence 356666556899999999999999999999888754321122 2222221 11 01111 111100000000000
Q ss_pred c-------------CCCCcchH-HHHHHHHHHHhCCC--eEEEc-CCCCCHHHHHHH--HHHHHHHcCCccEEEEcCcch
Q psy2891 276 T-------------GRLSSDDW-PRINDSIKKINKSQ--LYIDE-TPSLNVIELRAN--SRRLSRQCGKIGVIIIDYLQL 336 (452)
Q Consensus 276 ~-------------g~l~~~~~-~~~~~a~~~l~~~~--l~i~~-~~~~t~~~i~~~--i~~~~~~~~~~~~vvID~l~~ 336 (452)
. ..++..++ +++.++.+.+. .. -+.+. ...+|-.+.+.. ++.+. . +|+++++|.-..
T Consensus 98 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g-L~~~~~~~~~~~~LSgGq~qrv~iAraL~--~-~P~llllDEPt~ 173 (287)
T PRK13637 98 EETIEKDIAFGPINLGLSEEEIENRVKRAMNIVG-LDYEDYKDKSPFELSGGQKRRVAIAGVVA--M-EPKILILDEPTA 173 (287)
T ss_pred cccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcC-CCchhhccCCcccCCHHHHHHHHHHHHHH--c-CCCEEEEECCcc
Confidence 0 01222222 22333333321 11 01111 234565554432 33332 2 499999999543
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecC
Q psy2891 337 MSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRD 410 (452)
Q Consensus 337 i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~ 410 (452)
- -+. .....+...|+.++++.+.+||+++|--. .+...||.|+.+...
T Consensus 174 g------LD~-~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-------------------~~~~~~drv~~l~~G 221 (287)
T PRK13637 174 G------LDP-KGRDEILNKIKELHKEYNMTIILVSHSME-------------------DVAKLADRIIVMNKG 221 (287)
T ss_pred C------CCH-HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-------------------HHHHhCCEEEEEECC
Confidence 2 122 23456777788888888999999987432 234567888777643
No 196
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.60 E-value=0.0016 Score=60.14 Aligned_cols=28 Identities=29% Similarity=0.323 Sum_probs=24.9
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
+.+|+++.|.|++|+|||||+.-++-..
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 6799999999999999999998887643
No 197
>KOG0061|consensus
Probab=97.60 E-value=0.00038 Score=73.85 Aligned_cols=160 Identities=16% Similarity=0.207 Sum_probs=88.3
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHh-CCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccC----
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE-NKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTG---- 277 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~-~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g---- 277 (452)
-|+.+.|-.+||+++.|.|++|+||||++--+|.....+ .-...+.+..+....+...++.+. +..+...-+
T Consensus 45 iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~y---V~QdD~l~~~LTV 121 (613)
T KOG0061|consen 45 ILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGY---VQQDDVLLPTLTV 121 (613)
T ss_pred eeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEE---EcccccccccccH
Confidence 455666778999999999999999999999998877531 112244455544444444444322 222111111
Q ss_pred --------------CCCcch-HHHHHHHHHHHhCC---CeEEE--cCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchh
Q psy2891 278 --------------RLSSDD-WPRINDSIKKINKS---QLYID--ETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLM 337 (452)
Q Consensus 278 --------------~l~~~~-~~~~~~a~~~l~~~---~l~i~--~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i 337 (452)
.++.++ .+++.+.+..+.-. +-.|- ...+++-.+-+...-...--+ +|.++++|.-+
T Consensus 122 ~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~-~P~iLflDEPT-- 198 (613)
T KOG0061|consen 122 RETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLT-DPSILFLDEPT-- 198 (613)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHc-CCCEEEecCCC--
Confidence 122222 23444444444211 11111 112455455544333333334 49999999843
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEE-ecC
Q psy2891 338 SANSRGENRATEISEISRNLKGLAKEINCPILAL-SQL 374 (452)
Q Consensus 338 ~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l-~ql 374 (452)
.+-+... .-.+++.||++|++ |.+||++ ||.
T Consensus 199 ----SGLDS~s-A~~vv~~Lk~lA~~-grtVi~tIHQP 230 (613)
T KOG0061|consen 199 ----SGLDSFS-ALQVVQLLKRLARS-GRTVICTIHQP 230 (613)
T ss_pred ----CCcchhh-HHHHHHHHHHHHhC-CCEEEEEEeCC
Confidence 2233333 34788999999999 7776655 454
No 198
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.60 E-value=0.0016 Score=64.97 Aligned_cols=35 Identities=17% Similarity=0.332 Sum_probs=29.0
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++--
T Consensus 18 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl 52 (369)
T PRK11000 18 ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL 52 (369)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45665445889999999999999999999877754
No 199
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.59 E-value=0.0014 Score=64.60 Aligned_cols=160 Identities=15% Similarity=0.159 Sum_probs=81.4
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC----CCHHHHH--HHHHHHhCC---CC-c
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME----MSGIQLA--MRMLGSVGK---LD-Q 271 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E----~~~~~i~--~R~~a~~~~---i~-~ 271 (452)
..|+.+.--+.+|+++.|.|++|+|||||+.-++.-..- ....|. +..+ .+..++. .|-++.... .- .
T Consensus 19 ~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p-~~G~I~-i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~ 96 (343)
T TIGR02314 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TSGSVI-VDGQDLTTLSNSELTKARRQIGMIFQHFNLLSS 96 (343)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-CceEEE-ECCEECCcCCHHHHHHHhcCEEEEECCcccccc
Confidence 456776556899999999999999999999888764321 112233 3322 2222221 111111000 00 0
Q ss_pred ccccc--------CCCCcc-hHHHHHHHHHHHhCCCeEEEc-CCCCCHHHHHH--HHHHHHHHcCCccEEEEcCcchhcc
Q psy2891 272 HKLRT--------GRLSSD-DWPRINDSIKKINKSQLYIDE-TPSLNVIELRA--NSRRLSRQCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 272 ~~i~~--------g~l~~~-~~~~~~~a~~~l~~~~l~i~~-~~~~t~~~i~~--~i~~~~~~~~~~~~vvID~l~~i~~ 339 (452)
..+.+ ...+.. ..+++.+..+.+.-.. +.+. ...+|-.+-+. .++.+. . +|++++.|.-..-
T Consensus 97 ~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~-~~~~~~~~LSgGqkQRV~IARAL~--~-~P~iLLlDEPts~-- 170 (343)
T TIGR02314 97 RTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGD-KHDSYPSNLSGGQKQRVAIARALA--S-NPKVLLCDEATSA-- 170 (343)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHHH--h-CCCEEEEeCCccc--
Confidence 00000 011111 1223333333321111 1111 23455555433 233333 2 4999999985421
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecC
Q psy2891 340 NSRGENRATEISEISRNLKGLAKEINCPILALSQL 374 (452)
Q Consensus 340 ~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql 374 (452)
-+. .....+.+.|+.+.++.+++||+++|-
T Consensus 171 ----LD~-~t~~~i~~lL~~l~~~~g~tiiliTH~ 200 (343)
T TIGR02314 171 ----LDP-ATTQSILELLKEINRRLGLTILLITHE 200 (343)
T ss_pred ----CCH-HHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 121 223477788889988899999999883
No 200
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.59 E-value=0.00076 Score=64.14 Aligned_cols=36 Identities=14% Similarity=0.319 Sum_probs=29.4
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 22 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 57 (265)
T PRK10253 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLM 57 (265)
T ss_pred EeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 455554458899999999999999999998776543
No 201
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.59 E-value=0.0021 Score=64.61 Aligned_cols=160 Identities=13% Similarity=0.172 Sum_probs=79.7
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC----CCHHHHHH---HHHHHhC---CCCc-
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME----MSGIQLAM---RMLGSVG---KLDQ- 271 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E----~~~~~i~~---R~~a~~~---~i~~- 271 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++--.--..| .| ++..+ ++..++.. +-++... ++-.
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG-~I-~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~ 120 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG-QV-LIDGVDIAKISDAELREVRRKKIAMVFQSFALMPH 120 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC-EE-EECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCC
Confidence 35555445899999999999999999999877754321122 23 33322 23332211 1111100 0000
Q ss_pred ccccc--------CCCCcc-hHHHHHHHHHHHhCCCeEEEc-CCCCCHHHHHH--HHHHHHHHcCCccEEEEcCcchhcc
Q psy2891 272 HKLRT--------GRLSSD-DWPRINDSIKKINKSQLYIDE-TPSLNVIELRA--NSRRLSRQCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 272 ~~i~~--------g~l~~~-~~~~~~~a~~~l~~~~l~i~~-~~~~t~~~i~~--~i~~~~~~~~~~~~vvID~l~~i~~ 339 (452)
..+.+ ..++.. ..+++.++++.+. ..-+... ...+|-.+-+. .++.+. . +++++++|.-..
T Consensus 121 ~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~g-L~~~~~~~~~~LSgGq~QRv~LArAL~--~-~P~iLLLDEPts--- 193 (400)
T PRK10070 121 MTVLDNTAFGMELAGINAEERREKALDALRQVG-LENYAHSYPDELSGGMRQRVGLARALA--I-NPDILLMDEAFS--- 193 (400)
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-CChhhhcCcccCCHHHHHHHHHHHHHh--c-CCCEEEEECCCc---
Confidence 00000 001111 1123333333321 1111221 23456554433 233332 3 499999998532
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCC
Q psy2891 340 NSRGENRATEISEISRNLKGLAKEINCPILALSQLN 375 (452)
Q Consensus 340 ~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~ 375 (452)
+-+. .....+.+.|+.+.++.+.+||+++|--
T Consensus 194 ---~LD~-~~r~~l~~~L~~l~~~~g~TIIivTHd~ 225 (400)
T PRK10070 194 ---ALDP-LIRTEMQDELVKLQAKHQRTIVFISHDL 225 (400)
T ss_pred ---cCCH-HHHHHHHHHHHHHHHHCCCeEEEEECCH
Confidence 1222 2335677778888888899999988853
No 202
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=97.59 E-value=0.00029 Score=62.12 Aligned_cols=140 Identities=18% Similarity=0.195 Sum_probs=90.4
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHH
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSI 291 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~ 291 (452)
..|.|.+++|+-++|||+-+++-+.+.. ..|.+|+.|....+.+--...+.+ ..|.+..
T Consensus 2 ~~g~l~~i~gpM~SGKT~eLl~r~~~~~-~~g~~v~vfkp~iD~R~~~~~V~S-r~G~~~~------------------- 60 (201)
T COG1435 2 KMGWLEFIYGPMFSGKTEELLRRARRYK-EAGMKVLVFKPAIDTRYGVGKVSS-RIGLSSE------------------- 60 (201)
T ss_pred ceEEEEEEEccCcCcchHHHHHHHHHHH-HcCCeEEEEecccccccccceeee-ccCCccc-------------------
Confidence 4578999999999999999999999986 479999999887653321111111 1121111
Q ss_pred HHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEE
Q psy2891 292 KKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILAL 371 (452)
Q Consensus 292 ~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l 371 (452)
-.... +-.++...+....... ..++|+||-.|.+.. ++...|..+|.++|+|||+-
T Consensus 61 -------A~~i~----~~~~i~~~i~~~~~~~-~~~~v~IDEaQF~~~------------~~v~~l~~lad~lgi~Vi~~ 116 (201)
T COG1435 61 -------AVVIP----SDTDIFDEIAALHEKP-PVDCVLIDEAQFFDE------------ELVYVLNELADRLGIPVICY 116 (201)
T ss_pred -------ceecC----ChHHHHHHHHhcccCC-CcCEEEEehhHhCCH------------HHHHHHHHHHhhcCCEEEEe
Confidence 11111 2346666665553332 278999999987753 45778999999999999986
Q ss_pred ecCCcchhhcCCCCCCchhhhhhchhhhhhceeE
Q psy2891 372 SQLNRSLEQRQNKRPIMSDLRESGAIEQDADVIL 405 (452)
Q Consensus 372 ~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl 405 (452)
. |..+..+ .| +.+|..+-..||.|.
T Consensus 117 G-L~~DFrg----ep----Fe~s~~Lla~ADkv~ 141 (201)
T COG1435 117 G-LDTDFRG----EP----FEGSKYLLAIADKVT 141 (201)
T ss_pred c-ccccccc----CC----CccHHHHHHHHHHHH
Confidence 4 4443321 12 344555666666653
No 203
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=97.59 E-value=0.00046 Score=63.04 Aligned_cols=109 Identities=21% Similarity=0.254 Sum_probs=63.3
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccc-cccCCC-Ccc-hHHHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHK-LRTGRL-SSD-DWPRINDSIK 292 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~-i~~g~l-~~~-~~~~~~~a~~ 292 (452)
+.+.++.+|+|||+++.++|..++...|++|+.+.++.....+... .+++... +.+ .+ .+. ++. +++.
T Consensus 38 i~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~-----~~~~~~~~l~~-~l~~~~~~l~---~~i~ 108 (207)
T TIGR03018 38 IMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRT-----LGLEAEPGLSD-CLLDPVLDLA---DVLV 108 (207)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhhe-----eCCCCCCCHHH-HHcCCCCCHH---HHhc
Confidence 5555578999999999999999886468999999999865433222 2222110 100 00 011 222 2222
Q ss_pred HHhCCCeEEEcCCC--------CCHHHHHHHHHHHHHHcCCccEEEEcCc
Q psy2891 293 KINKSQLYIDETPS--------LNVIELRANSRRLSRQCGKIGVIIIDYL 334 (452)
Q Consensus 293 ~l~~~~l~i~~~~~--------~t~~~i~~~i~~~~~~~~~~~~vvID~l 334 (452)
......+++...+. .+...+...+..++.+++ .|+||||.-
T Consensus 109 ~~~~~~l~vl~~g~~~~~~~~~~~~~~l~~~l~~l~~~y~-~D~IiiD~p 157 (207)
T TIGR03018 109 PTNIGRLSLLPAGRRHPNPTELLASQRMRSLLHELARRYP-DRIIIIDTP 157 (207)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHhCcHHHHHHHHHHHhhCC-CCEEEEECC
Confidence 22223577654221 122345566666666664 599999984
No 204
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.58 E-value=0.0021 Score=60.89 Aligned_cols=36 Identities=22% Similarity=0.516 Sum_probs=29.3
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 52 (258)
T PRK13548 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGEL 52 (258)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455554458899999999999999999998777643
No 205
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=97.58 E-value=0.00058 Score=64.49 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=28.2
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-.
T Consensus 18 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 52 (254)
T PRK10418 18 LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34444345899999999999999999998877654
No 206
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.57 E-value=0.00081 Score=65.27 Aligned_cols=37 Identities=24% Similarity=0.513 Sum_probs=30.7
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
+.|+.+.--+.+|+++.|.|++|+|||||+.-++--.
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~ 57 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALL 57 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4566665568999999999999999999998877643
No 207
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.57 E-value=0.00084 Score=60.38 Aligned_cols=35 Identities=17% Similarity=0.364 Sum_probs=28.3
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-.
T Consensus 7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35555446899999999999999999999866643
No 208
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.57 E-value=0.0017 Score=60.58 Aligned_cols=178 Identities=14% Similarity=0.142 Sum_probs=87.1
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCH-HHHHHHHHHHh-------CCCCccc-
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSG-IQLAMRMLGSV-------GKLDQHK- 273 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~-~~i~~R~~a~~-------~~i~~~~- 273 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-......| .|. +..+... .....+.++.. .+.+...
T Consensus 15 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G-~i~-i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~en 92 (237)
T TIGR00968 15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSG-RIR-LNGQDATRVHARDRKIGFVFQHYALFKHLTVRDN 92 (237)
T ss_pred eeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEE-ECCEEcCcCChhhcCEEEEecChhhccCCcHHHH
Confidence 34444335899999999999999999999888754322222 222 2111000 00001111000 0000000
Q ss_pred ccc----CCCCc-chHHHHHHHHHHHhCCCeEEEc-CCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHH
Q psy2891 274 LRT----GRLSS-DDWPRINDSIKKINKSQLYIDE-TPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRA 347 (452)
Q Consensus 274 i~~----g~l~~-~~~~~~~~a~~~l~~~~l~i~~-~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~ 347 (452)
+.. ...+. ...+.+.++++.+. ..-+... ...+|..+.+...-...-.. +++++++|.... +.+ .
T Consensus 93 l~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~lS~G~~qrl~laral~~-~p~llllDEP~~------~LD-~ 163 (237)
T TIGR00968 93 IAFGLEIRKHPKAKIKARVEELLELVQ-LEGLGDRYPNQLSGGQRQRVALARALAV-EPQVLLLDEPFG------ALD-A 163 (237)
T ss_pred HHhHHHhcCCCHHHHHHHHHHHHHHcC-CHhHhhCChhhCCHHHHHHHHHHHHHhc-CCCEEEEcCCcc------cCC-H
Confidence 000 00111 11122333333321 1111111 23566655544322222222 499999998532 122 2
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecC
Q psy2891 348 TEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRD 410 (452)
Q Consensus 348 ~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~ 410 (452)
.....+.+.|+.++++.+.+||+++|-.. .+...||.++.+...
T Consensus 164 ~~~~~~~~~l~~~~~~~~~tvli~sH~~~-------------------~~~~~~d~i~~l~~g 207 (237)
T TIGR00968 164 KVRKELRSWLRKLHDEVHVTTVFVTHDQE-------------------EAMEVADRIVVMSNG 207 (237)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-------------------HHHhhcCEEEEEECC
Confidence 23456777888887777899999988332 245568888888643
No 209
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.56 E-value=0.00076 Score=63.70 Aligned_cols=35 Identities=11% Similarity=0.247 Sum_probs=29.0
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-.
T Consensus 20 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred EEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 45555445889999999999999999999877754
No 210
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.56 E-value=0.00069 Score=63.20 Aligned_cols=37 Identities=11% Similarity=0.212 Sum_probs=32.3
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
...+|.|+||+|||+++..++..+. ..|.+|.|++++
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~-~~~~~v~y~~~~ 82 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELS-QRGRAVGYVPLD 82 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH-hCCCeEEEEEHH
Confidence 3689999999999999999988876 468999999885
No 211
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.56 E-value=0.0029 Score=59.83 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=29.8
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 20 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456654468999999999999999999998777653
No 212
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.55 E-value=0.00098 Score=66.03 Aligned_cols=37 Identities=22% Similarity=0.307 Sum_probs=30.2
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
..|+.+.--+.+|+++.|.|++|+|||||+.-++--.
T Consensus 16 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~ 52 (353)
T PRK10851 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLE 52 (353)
T ss_pred EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3466664458999999999999999999998887643
No 213
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.55 E-value=0.00049 Score=66.24 Aligned_cols=36 Identities=22% Similarity=0.406 Sum_probs=30.2
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
..|+.+.--+.+|+++.|.|++|+|||||+.-++-.
T Consensus 21 ~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl 56 (287)
T PRK13641 21 KGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNAL 56 (287)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 356766556899999999999999999999888754
No 214
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=97.55 E-value=0.0023 Score=60.72 Aligned_cols=36 Identities=17% Similarity=0.406 Sum_probs=29.1
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 19 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (262)
T PRK09984 19 ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred EEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 455554458899999999999999999999877543
No 215
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=97.55 E-value=0.0029 Score=61.98 Aligned_cols=181 Identities=15% Similarity=0.146 Sum_probs=92.8
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHh---CCCcEEEEeC---CCCHHHHHHH---HHHHhCC----
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE---NKLPVAIFSM---EMSGIQLAMR---MLGSVGK---- 268 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~---~g~~vl~~s~---E~~~~~i~~R---~~a~~~~---- 268 (452)
..|+.+.--+.+|+++.|.|++|+|||||+.-++--.... ....|.|-.- +++..+.... .++....
T Consensus 21 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 100 (326)
T PRK11022 21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMT 100 (326)
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchh
Confidence 4677775569999999999999999999998887643100 1223444221 2333333221 1111111
Q ss_pred -CCcc-cc----c-----cCCCCc-chHHHHHHHHHHHhCCC-e-EEE-cCCCCCHHHHHHHHHHHHHHcCCccEEEEcC
Q psy2891 269 -LDQH-KL----R-----TGRLSS-DDWPRINDSIKKINKSQ-L-YID-ETPSLNVIELRANSRRLSRQCGKIGVIIIDY 333 (452)
Q Consensus 269 -i~~~-~i----~-----~g~l~~-~~~~~~~~a~~~l~~~~-l-~i~-~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~ 333 (452)
++.. .+ . ...... +..+++.++.+.+.=.. . +.. ....+|-.+....+-...-.. +++++|.|.
T Consensus 101 ~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~-~P~llilDE 179 (326)
T PRK11022 101 SLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIAC-RPKLLIADE 179 (326)
T ss_pred hcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHh-CCCEEEEeC
Confidence 0000 00 0 000111 11223333333321100 0 111 123456555443322222223 499999999
Q ss_pred cchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEec
Q psy2891 334 LQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYR 409 (452)
Q Consensus 334 l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r 409 (452)
-..-- +. .....+.+.|+.+.++.+.++|+++|--. .+.+.||.|+.|+.
T Consensus 180 Pts~L------D~-~~~~~il~lL~~l~~~~g~til~iTHdl~-------------------~~~~~adri~vm~~ 229 (326)
T PRK11022 180 PTTAL------DV-TIQAQIIELLLELQQKENMALVLITHDLA-------------------LVAEAAHKIIVMYA 229 (326)
T ss_pred CCCCC------CH-HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-------------------HHHHhCCEEEEEEC
Confidence 54322 22 23357788888898889999999987432 23456777777764
No 216
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.55 E-value=0.0021 Score=63.60 Aligned_cols=159 Identities=13% Similarity=0.169 Sum_probs=80.1
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC----CCHHHHHHHHHHHhCC-------CC
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME----MSGIQLAMRMLGSVGK-------LD 270 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E----~~~~~i~~R~~a~~~~-------i~ 270 (452)
..|+.+.--+.+|+++.|.|++|+|||||+.-++-...-..| .|. +..+ .++. .|-++.... .+
T Consensus 18 ~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G-~I~-i~g~~~~~~~~~---~r~ig~v~Q~~~lfp~~t 92 (353)
T TIGR03265 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAG-TIY-QGGRDITRLPPQ---KRDYGIVFQSYALFPNLT 92 (353)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCce-EEE-ECCEECCCCCHH---HCCEEEEeCCcccCCCCc
Confidence 346665445889999999999999999999888764321112 222 2211 1111 111110000 00
Q ss_pred cc-cc----ccCCCCcch-HHHHHHHHHHHhCCCeEEEc-CCCCCHHHHH--HHHHHHHHHcCCccEEEEcCcchhccCC
Q psy2891 271 QH-KL----RTGRLSSDD-WPRINDSIKKINKSQLYIDE-TPSLNVIELR--ANSRRLSRQCGKIGVIIIDYLQLMSANS 341 (452)
Q Consensus 271 ~~-~i----~~g~l~~~~-~~~~~~a~~~l~~~~l~i~~-~~~~t~~~i~--~~i~~~~~~~~~~~~vvID~l~~i~~~~ 341 (452)
.. .+ ....++..+ ..++.+..+.+.=.+ +.+. ...+|-.+-. +.++.+.. +|+++++|.-..
T Consensus 93 v~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~-~~~~~~~~LSgGq~QRvaLARaL~~---~P~llLLDEP~s----- 163 (353)
T TIGR03265 93 VADNIAYGLKNRGMGRAEVAERVAELLDLVGLPG-SERKYPGQLSGGQQQRVALARALAT---SPGLLLLDEPLS----- 163 (353)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCc-hhhCChhhCCHHHHHHHHHHHHHhc---CCCEEEEcCCcc-----
Confidence 00 00 001122222 123333333332111 1121 2245544433 33444432 499999998421
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCc
Q psy2891 342 RGENRATEISEISRNLKGLAKEINCPILALSQLNR 376 (452)
Q Consensus 342 ~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r 376 (452)
+-+. .....+...|+++.++.++++|+++|--.
T Consensus 164 -~LD~-~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ 196 (353)
T TIGR03265 164 -ALDA-RVREHLRTEIRQLQRRLGVTTIMVTHDQE 196 (353)
T ss_pred -cCCH-HHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 1121 22346777888888899999999988544
No 217
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.54 E-value=0.00048 Score=71.85 Aligned_cols=38 Identities=24% Similarity=0.219 Sum_probs=32.1
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHh-CCCcEEEEeCCC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIE-NKLPVAIFSMEM 253 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~-~g~~vl~~s~E~ 253 (452)
.++|.|++|+|||.|+..++..+... .|.+|+|++++.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaee 354 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEE 354 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 47999999999999999999887532 478999998764
No 218
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.54 E-value=0.0026 Score=58.38 Aligned_cols=59 Identities=19% Similarity=0.216 Sum_probs=41.5
Q ss_pred CccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhcee
Q psy2891 325 KIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVI 404 (452)
Q Consensus 325 ~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~v 404 (452)
+++++++|.-.. +-+. .....+.+.|+.++++.+.+||+++|-.. .+++.+|.+
T Consensus 149 ~p~llllDEPt~------~LD~-~~~~~l~~~l~~~~~~~~~tiii~sH~~~-------------------~~~~~~d~i 202 (214)
T cd03297 149 QPELLLLDEPFS------ALDR-ALRLQLLPELKQIKKNLNIPVIFVTHDLS-------------------EAEYLADRI 202 (214)
T ss_pred CCCEEEEcCCcc------cCCH-HHHHHHHHHHHHHHHHcCcEEEEEecCHH-------------------HHHHhcCEE
Confidence 499999998432 1222 23457778888888877899999887432 356678999
Q ss_pred EEEec
Q psy2891 405 LFIYR 409 (452)
Q Consensus 405 l~l~r 409 (452)
+.+.+
T Consensus 203 ~~l~~ 207 (214)
T cd03297 203 VVMED 207 (214)
T ss_pred EEEEC
Confidence 98864
No 219
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.54 E-value=0.00053 Score=61.07 Aligned_cols=61 Identities=20% Similarity=0.269 Sum_probs=46.9
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRL 279 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l 279 (452)
+++|+|..|+|||||..+++. . ...|.++.++-.|+....+=.+++.. .|++...+.+|.+
T Consensus 2 v~ii~GfLGsGKTTli~~ll~-~-~~~~~~~~vI~ne~g~~~iD~~~l~~-~~~~v~~l~~gci 62 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK-R-NRQGERVAVIVNEFGEVNIDAELLQE-DGVPVVELNNGCI 62 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-H-HTTTS-EEEEECSTTSTHHHHHHHHT-TT-EEEEECTTTE
T ss_pred EEEEEcCCCCCHHHHHHHHHH-H-hcCCceeEEEEccccccccchhhhcc-cceEEEEecCCCc
Confidence 689999999999999999997 2 35789999999999977776666653 4666666766653
No 220
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=97.54 E-value=0.0015 Score=57.23 Aligned_cols=143 Identities=18% Similarity=0.162 Sum_probs=79.4
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhC-CCcEEEEeCCC-CHHHHHHHHHHHhCC--CCccccccCCCCcchHHHHHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIEN-KLPVAIFSMEM-SGIQLAMRMLGSVGK--LDQHKLRTGRLSSDDWPRIND 289 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~-g~~vl~~s~E~-~~~~i~~R~~a~~~~--i~~~~i~~g~l~~~~~~~~~~ 289 (452)
|.-++|.|++|+|||..+.-.+.+...+. ...++|+.-.. -..+...++...... +....+ .|..+... .
T Consensus 14 ~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~ 87 (169)
T PF00270_consen 14 GKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLL-HGGQSISE-----D 87 (169)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEE-STTSCHHH-----H
T ss_pred CCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccc-cccccccc-----c
Confidence 45688999999999999888777765433 13777776543 344555555444333 222222 23333210 1
Q ss_pred HHHHHh-CCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcE
Q psy2891 290 SIKKIN-KSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPI 368 (452)
Q Consensus 290 a~~~l~-~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~v 368 (452)
...++. +..+.+. |++.+...+.......-++++||||.++.+... .....+..+.+.++.. .++++
T Consensus 88 ~~~~~~~~~~ilv~-----T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~----~~~~~~~~i~~~~~~~---~~~~~ 155 (169)
T PF00270_consen 88 QREVLSNQADILVT-----TPEQLLDLISNGKINISRLSLIVIDEAHHLSDE----TFRAMLKSILRRLKRF---KNIQI 155 (169)
T ss_dssp HHHHHHTTSSEEEE-----EHHHHHHHHHTTSSTGTTESEEEEETHHHHHHT----THHHHHHHHHHHSHTT---TTSEE
T ss_pred cccccccccccccc-----CcchhhccccccccccccceeeccCcccccccc----cHHHHHHHHHHHhcCC---CCCcE
Confidence 112233 3466664 455666555431111114899999999998863 2333344444443322 26888
Q ss_pred EEEecC
Q psy2891 369 LALSQL 374 (452)
Q Consensus 369 i~l~ql 374 (452)
++++-.
T Consensus 156 i~~SAT 161 (169)
T PF00270_consen 156 ILLSAT 161 (169)
T ss_dssp EEEESS
T ss_pred EEEeeC
Confidence 887743
No 221
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.54 E-value=0.0026 Score=59.53 Aligned_cols=36 Identities=19% Similarity=0.396 Sum_probs=29.5
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 16 VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 455554458999999999999999999998777643
No 222
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.54 E-value=0.0039 Score=66.84 Aligned_cols=117 Identities=12% Similarity=0.232 Sum_probs=72.8
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCC-CcEEEEeCCCCHHHHH--HHHHHHhCCCCccccccCCCCcchHHHH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENK-LPVAIFSMEMSGIQLA--MRMLGSVGKLDQHKLRTGRLSSDDWPRI 287 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g-~~vl~~s~E~~~~~i~--~R~~a~~~~i~~~~i~~g~l~~~~~~~~ 287 (452)
+.+|.++.+.|++|+||||.+..++.......| .+|.+++.+-..--.. -+..+...|++..... ++ ..+
T Consensus 182 ~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~----~~---~~l 254 (767)
T PRK14723 182 LAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVK----DA---ADL 254 (767)
T ss_pred cCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccC----CH---HHH
Confidence 456889999999999999999999988755555 5899999885431112 2334455666654322 22 235
Q ss_pred HHHHHHHhCCCeEEEcCCCCCH--HHHHHHHHHHHHHcC-CccEEEEcCc
Q psy2891 288 NDSIKKINKSQLYIDETPSLNV--IELRANSRRLSRQCG-KIGVIIIDYL 334 (452)
Q Consensus 288 ~~a~~~l~~~~l~i~~~~~~t~--~~i~~~i~~~~~~~~-~~~~vvID~l 334 (452)
.++++.+.+..+.+.|+++.+. ..+...+..+..... .-.++|+|..
T Consensus 255 ~~al~~~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt 304 (767)
T PRK14723 255 RFALAALGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAA 304 (767)
T ss_pred HHHHHHhcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCC
Confidence 6677777777777777766442 234444444432221 1246666653
No 223
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.54 E-value=0.0006 Score=65.38 Aligned_cols=159 Identities=12% Similarity=0.210 Sum_probs=79.2
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC---CCHHHHHHHHHHHhCCC--------Cc
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME---MSGIQLAMRMLGSVGKL--------DQ 271 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E---~~~~~i~~R~~a~~~~i--------~~ 271 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..-- ....|.|-.-+ .+..++. +.++....- +.
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p-~~G~i~~~g~~i~~~~~~~~~-~~i~~~~q~~~~~~~~~tv 99 (279)
T PRK13635 22 ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP-EAGTITVGGMVLSEETVWDVR-RQVGMVFQNPDNQFVGATV 99 (279)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCcEEEECCEECCcCcHHHHh-hheEEEEeCHHHhcccccH
Confidence 56666456899999999999999999999877654321 22234332211 1222221 111111000 00
Q ss_pred c-ccccC----CCCcch-HHHHHHHHHHHhCCCeEEEc-CCCCCHHHHHH--HHHHHHHHcCCccEEEEcCcchhccCCC
Q psy2891 272 H-KLRTG----RLSSDD-WPRINDSIKKINKSQLYIDE-TPSLNVIELRA--NSRRLSRQCGKIGVIIIDYLQLMSANSR 342 (452)
Q Consensus 272 ~-~i~~g----~l~~~~-~~~~~~a~~~l~~~~l~i~~-~~~~t~~~i~~--~i~~~~~~~~~~~~vvID~l~~i~~~~~ 342 (452)
. .+.-+ .++..+ ..++..+...+. ..-++.. ...+|-.+.+. .++.+. . +|+++++|....
T Consensus 100 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~g-L~~~~~~~~~~LS~G~~qrv~laral~--~-~p~lllLDEPt~------ 169 (279)
T PRK13635 100 QDDVAFGLENIGVPREEMVERVDQALRQVG-MEDFLNREPHRLSGGQKQRVAIAGVLA--L-QPDIIILDEATS------ 169 (279)
T ss_pred HHHHhhhHhhCCCCHHHHHHHHHHHHHHcC-ChhhhhCCcccCCHHHHHHHHHHHHHH--c-CCCEEEEeCCcc------
Confidence 0 00000 112211 122333332221 1111111 23455544433 233332 2 499999999532
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhCCcEEEEecC
Q psy2891 343 GENRATEISEISRNLKGLAKEINCPILALSQL 374 (452)
Q Consensus 343 ~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql 374 (452)
+-+. .....+.+.|+.++++.+++||+++|-
T Consensus 170 gLD~-~~~~~l~~~l~~l~~~~~~tilivsH~ 200 (279)
T PRK13635 170 MLDP-RGRREVLETVRQLKEQKGITVLSITHD 200 (279)
T ss_pred cCCH-HHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 1222 234577778888888889999999874
No 224
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=97.52 E-value=0.00072 Score=64.88 Aligned_cols=161 Identities=16% Similarity=0.207 Sum_probs=79.7
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC-----HHHHHHHHHHHhCCCC-------
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS-----GIQLAMRMLGSVGKLD------- 270 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~-----~~~i~~R~~a~~~~i~------- 270 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..-...| .| ++..+.- ..++ .+.++....-+
T Consensus 25 vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G-~i-~i~g~~i~~~~~~~~~-~~~i~~v~q~~~~~~~~~ 101 (280)
T PRK13633 25 ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEG-KV-YVDGLDTSDEENLWDI-RNKAGMVFQNPDNQIVAT 101 (280)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eE-EECCEeccccccHHHH-hhheEEEecChhhhhccc
Confidence 56666556899999999999999999999887754321122 23 3322211 0111 11111110000
Q ss_pred -cc-ccccC----CCCcchH-HHHHHHHHHHhCCCeEEE-cCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCC
Q psy2891 271 -QH-KLRTG----RLSSDDW-PRINDSIKKINKSQLYID-ETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSR 342 (452)
Q Consensus 271 -~~-~i~~g----~l~~~~~-~~~~~a~~~l~~~~l~i~-~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~ 342 (452)
.. .+.-+ .++..++ .++..+++.+. ..-+.. ....+|-.+.+...-...--. +|+++++|.-..-
T Consensus 102 ~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g-L~~~~~~~~~~LS~G~~qrv~laral~~-~p~llllDEPt~g----- 174 (280)
T PRK13633 102 IVEEDVAFGPENLGIPPEEIRERVDESLKKVG-MYEYRRHAPHLLSGGQKQRVAIAGILAM-RPECIIFDEPTAM----- 174 (280)
T ss_pred cHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCC-CHhHhhCCcccCCHHHHHHHHHHHHHHc-CCCEEEEeCCccc-----
Confidence 00 00000 1122221 22333333321 111111 123566555443322222223 4999999985321
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCC
Q psy2891 343 GENRATEISEISRNLKGLAKEINCPILALSQLN 375 (452)
Q Consensus 343 ~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~ 375 (452)
-+ ......+...|+.++++.+.+||+++|--
T Consensus 175 -LD-~~~~~~l~~~l~~l~~~~g~tillvtH~~ 205 (280)
T PRK13633 175 -LD-PSGRREVVNTIKELNKKYGITIILITHYM 205 (280)
T ss_pred -CC-HHHHHHHHHHHHHHHHhcCCEEEEEecCh
Confidence 12 22334677788888887899999998743
No 225
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.52 E-value=0.0024 Score=57.69 Aligned_cols=160 Identities=14% Similarity=0.136 Sum_probs=81.8
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH--HHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCC
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI--AIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLS 280 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~--a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~ 280 (452)
.|+.+.--+.+|+.+.|.|++|+|||||+.-++-.. ....| .|.| ..+........+.+ ++-... ...+.
T Consensus 24 ~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G-~i~~-~g~~~~~~~~~~~i----~~~~q~--~~~~~ 95 (194)
T cd03213 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSG-EVLI-NGRPLDKRSFRKII----GYVPQD--DILHP 95 (194)
T ss_pred ceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCce-EEEE-CCEeCchHhhhheE----EEccCc--ccCCC
Confidence 455554458999999999999999999998887643 22223 3443 33321111111111 111110 01111
Q ss_pred cchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHH--HHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHH
Q psy2891 281 SDDWPRINDSIKKINKSQLYIDETPSLNVIELRA--NSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLK 358 (452)
Q Consensus 281 ~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~--~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk 358 (452)
... +.+.+.... .+. .+|-.+.+. .++.+. . +++++++|.-.. +-+. .....+.+.|+
T Consensus 96 ~~t---~~~~i~~~~--~~~-----~LS~G~~qrv~laral~--~-~p~illlDEP~~------~LD~-~~~~~l~~~l~ 155 (194)
T cd03213 96 TLT---VRETLMFAA--KLR-----GLSGGERKRVSIALELV--S-NPSLLFLDEPTS------GLDS-SSALQVMSLLR 155 (194)
T ss_pred CCc---HHHHHHHHH--Hhc-----cCCHHHHHHHHHHHHHH--c-CCCEEEEeCCCc------CCCH-HHHHHHHHHHH
Confidence 101 111111000 011 455555433 233332 3 499999998532 1222 22345666677
Q ss_pred HHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEec
Q psy2891 359 GLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYR 409 (452)
Q Consensus 359 ~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r 409 (452)
.+.++ +.+||+++|--. ..+.+.+|.++.+..
T Consensus 156 ~~~~~-~~tiii~sh~~~------------------~~~~~~~d~v~~l~~ 187 (194)
T cd03213 156 RLADT-GRTIICSIHQPS------------------SEIFELFDKLLLLSQ 187 (194)
T ss_pred HHHhC-CCEEEEEecCch------------------HHHHHhcCEEEEEeC
Confidence 76554 888888887432 124567899988854
No 226
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.52 E-value=0.0011 Score=60.28 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=29.1
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+.+.|.|++|+|||||+.-++-..
T Consensus 13 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 455554458899999999999999999998877543
No 227
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.52 E-value=0.0022 Score=62.26 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=29.5
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 19 ~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456654458999999999999999999998877543
No 228
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.52 E-value=0.0022 Score=59.20 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=28.2
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-.
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34444335889999999999999999999877754
No 229
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.52 E-value=0.0018 Score=61.29 Aligned_cols=36 Identities=19% Similarity=0.416 Sum_probs=29.3
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 21 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 21 GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred eeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355554458999999999999999999998877644
No 230
>PF05729 NACHT: NACHT domain
Probab=97.52 E-value=0.00056 Score=59.55 Aligned_cols=26 Identities=23% Similarity=0.556 Sum_probs=23.8
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHh
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIE 241 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~ 241 (452)
+++|.|.||+|||+++..++...+..
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~ 27 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEE 27 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhc
Confidence 68999999999999999999998754
No 231
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.52 E-value=0.0027 Score=59.21 Aligned_cols=34 Identities=21% Similarity=0.435 Sum_probs=28.0
Q ss_pred cccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 204 LDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 204 LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
|+.+.--+.+|+.+.|.|++|+|||||+.-++-.
T Consensus 15 l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~ 48 (235)
T cd03299 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGF 48 (235)
T ss_pred eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5555345889999999999999999999877654
No 232
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.52 E-value=0.0015 Score=62.04 Aligned_cols=38 Identities=37% Similarity=0.541 Sum_probs=30.7
Q ss_pred ccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 201 FFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 201 ~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.+.|+.+.--+.+|+.+.|.|++|+|||||+.-++--.
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~ 74 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34566654458999999999999999999998887644
No 233
>PF13245 AAA_19: Part of AAA domain
Probab=97.52 E-value=0.00018 Score=54.22 Aligned_cols=42 Identities=19% Similarity=0.194 Sum_probs=33.6
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHh---CCCcEEEEeCCCC
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIE---NKLPVAIFSMEMS 254 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~---~g~~vl~~s~E~~ 254 (452)
.+.+.+|.|+||+|||+.+.+.+...... .+.+|++++.-..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~ 53 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRA 53 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHH
Confidence 35688999999999999999999888631 1678999977643
No 234
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.52 E-value=0.00073 Score=64.60 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=29.5
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-.
T Consensus 20 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (274)
T PRK13647 20 ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGI 54 (274)
T ss_pred eeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 56666456899999999999999999999888754
No 235
>PRK13768 GTPase; Provisional
Probab=97.52 E-value=0.0016 Score=61.50 Aligned_cols=39 Identities=18% Similarity=0.354 Sum_probs=34.4
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSG 255 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~ 255 (452)
+++++|++|+||||++.+++..++. .|.+|+++.++-..
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~-~g~~v~~i~~D~~~ 42 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEE-QGYDVAIVNLDPAV 42 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHh-cCCceEEEECCCcc
Confidence 6889999999999999999999874 78999999887543
No 236
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.51 E-value=0.0015 Score=59.55 Aligned_cols=176 Identities=14% Similarity=0.135 Sum_probs=91.9
Q ss_pred cccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC---CCHHH---HHHHHH------HHhCCCCc
Q psy2891 204 LDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME---MSGIQ---LAMRML------GSVGKLDQ 271 (452)
Q Consensus 204 LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E---~~~~~---i~~R~~------a~~~~i~~ 271 (452)
||.+.--+++|+++.|.|++|+|||+++..++--..-.. ..|.++--+ ++.++ +..|+- |..+.++.
T Consensus 24 ld~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~-GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV 102 (263)
T COG1127 24 LDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDK-GEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTV 102 (263)
T ss_pred ecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCC-CeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccch
Confidence 455544689999999999999999999999887664323 335554332 23322 222220 01111111
Q ss_pred ------cccccCCCCcchHHHHHHHHHHHh--CCCeE-EEc-CCCCCH--HHHHHHHHHHHHHcCCccEEEEcCcchhcc
Q psy2891 272 ------HKLRTGRLSSDDWPRINDSIKKIN--KSQLY-IDE-TPSLNV--IELRANSRRLSRQCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 272 ------~~i~~g~l~~~~~~~~~~a~~~l~--~~~l~-i~~-~~~~t~--~~i~~~i~~~~~~~~~~~~vvID~l~~i~~ 339 (452)
.-.....+++...+.+. ..++. +.+=. .+- ...+|= ..=.+.+|.+ . . +|++++.|--..
T Consensus 103 ~eNVafplre~~~lp~~~i~~lv--~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAi-a-l-dPell~~DEPts--- 174 (263)
T COG1127 103 FENVAFPLREHTKLPESLIRELV--LMKLELVGLRGAAADLYPSELSGGMRKRVALARAI-A-L-DPELLFLDEPTS--- 174 (263)
T ss_pred hHhhheehHhhccCCHHHHHHHH--HHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHH-h-c-CCCEEEecCCCC---
Confidence 11122445655554432 22332 11111 111 112221 1111222222 2 2 499999998432
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCc
Q psy2891 340 NSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDE 411 (452)
Q Consensus 340 ~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~ 411 (452)
+.+.- ..+.+..-++.+-+.+++++++++|=-- .+...||.+++|+.-.
T Consensus 175 ---GLDPI-~a~~~~~LI~~L~~~lg~T~i~VTHDl~-------------------s~~~i~Drv~~L~~gk 223 (263)
T COG1127 175 ---GLDPI-SAGVIDELIRELNDALGLTVIMVTHDLD-------------------SLLTIADRVAVLADGK 223 (263)
T ss_pred ---CCCcc-hHHHHHHHHHHHHHhhCCEEEEEECChH-------------------HHHhhhceEEEEeCCE
Confidence 11111 2345555566666789999999987321 3456789999997643
No 237
>PRK05642 DNA replication initiation factor; Validated
Probab=97.51 E-value=0.00099 Score=62.09 Aligned_cols=37 Identities=14% Similarity=0.281 Sum_probs=31.1
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
..++|.|++|+|||.|+..++..+. +.|.+|+|++.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~-~~~~~v~y~~~~ 82 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFE-QRGEPAVYLPLA 82 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH-hCCCcEEEeeHH
Confidence 3578999999999999888877765 468999999875
No 238
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.50 E-value=0.0011 Score=62.65 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=29.5
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+.+.|.|++|+|||||+.-++-..
T Consensus 16 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (256)
T TIGR03873 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGAL 51 (256)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 455554458899999999999999999999887643
No 239
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.50 E-value=0.0027 Score=63.02 Aligned_cols=35 Identities=26% Similarity=0.505 Sum_probs=29.3
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++--
T Consensus 20 ~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl 54 (362)
T TIGR03258 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGF 54 (362)
T ss_pred EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46666445899999999999999999999888754
No 240
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.50 E-value=0.0019 Score=62.66 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=29.2
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++--
T Consensus 17 ~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred EEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 56666446899999999999999999999877654
No 241
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=97.50 E-value=0.0031 Score=62.56 Aligned_cols=28 Identities=25% Similarity=0.261 Sum_probs=24.9
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
-+.+|+++.|.|++|+|||||+.-++-.
T Consensus 19 ~i~~Gei~~l~G~nGsGKSTLl~~iaGl 46 (354)
T TIGR02142 19 TLPGQGVTAIFGRSGSGKTTLIRLIAGL 46 (354)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999999877654
No 242
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.50 E-value=0.0026 Score=63.49 Aligned_cols=36 Identities=14% Similarity=0.348 Sum_probs=29.2
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
..|+.+.--+.+|+++.|.|++|+|||||+.-++--
T Consensus 33 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl 68 (377)
T PRK11607 33 HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGF 68 (377)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 345655445889999999999999999999877753
No 243
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.49 E-value=0.0036 Score=61.21 Aligned_cols=39 Identities=21% Similarity=0.416 Sum_probs=33.8
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS 254 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~ 254 (452)
++++.|.||+||||++..++..+....|.+|.+++.+.-
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~ 39 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDI 39 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccc
Confidence 478999999999999999998886457899999988763
No 244
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.49 E-value=0.0053 Score=56.82 Aligned_cols=36 Identities=17% Similarity=0.310 Sum_probs=29.9
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 15 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 456654458899999999999999999998877654
No 245
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.49 E-value=0.003 Score=58.26 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=28.7
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.-.+.+|+++.|.|++|+|||||+.-++-.
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 45665446899999999999999999999866543
No 246
>PRK06893 DNA replication initiation factor; Validated
Probab=97.48 E-value=0.0011 Score=61.55 Aligned_cols=36 Identities=17% Similarity=0.308 Sum_probs=32.1
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
..+|.|+||+|||.++..++..++. ++.+|.|++.+
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~-~~~~~~y~~~~ 76 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLL-NQRTAIYIPLS 76 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH-cCCCeEEeeHH
Confidence 6899999999999999999998864 68899999874
No 247
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.48 E-value=0.0012 Score=58.78 Aligned_cols=155 Identities=13% Similarity=0.181 Sum_probs=80.7
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCH----HHHHHHHHHHhCCCCccccccCC
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSG----IQLAMRMLGSVGKLDQHKLRTGR 278 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~----~~i~~R~~a~~~~i~~~~i~~g~ 278 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-......| .|.+-.-+.+. .....+.++. +. .. ...
T Consensus 15 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~---~~-q~--~~~ 87 (178)
T cd03229 15 VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSG-SILIDGEDLTDLEDELPPLRRRIGM---VF-QD--FAL 87 (178)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEccccchhHHHHhhcEEE---Ee-cC--Ccc
Confidence 35555445889999999999999999999887754321122 34432211111 1111111110 00 00 000
Q ss_pred CCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHH--HHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHH
Q psy2891 279 LSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRAN--SRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRN 356 (452)
Q Consensus 279 l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~--i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~ 356 (452)
+..... . + .+... +|-.+.+.. ++.+. . +++++++|.-.. +-+. .....+.+.
T Consensus 88 ~~~~t~---~---~-----~l~~~----lS~G~~qr~~la~al~--~-~p~llilDEP~~------~LD~-~~~~~l~~~ 142 (178)
T cd03229 88 FPHLTV---L---E-----NIALG----LSGGQQQRVALARALA--M-DPDVLLLDEPTS------ALDP-ITRREVRAL 142 (178)
T ss_pred CCCCCH---H---H-----heeec----CCHHHHHHHHHHHHHH--C-CCCEEEEeCCcc------cCCH-HHHHHHHHH
Confidence 000000 0 0 01110 444443332 33332 2 499999998532 1222 233467777
Q ss_pred HHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEe
Q psy2891 357 LKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIY 408 (452)
Q Consensus 357 Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~ 408 (452)
|+.++++.+.++|+++|-.. .++..+|.++.+.
T Consensus 143 l~~~~~~~~~tiii~sH~~~-------------------~~~~~~d~i~~l~ 175 (178)
T cd03229 143 LKSLQAQLGITVVLVTHDLD-------------------EAARLADRVVVLR 175 (178)
T ss_pred HHHHHHhcCCEEEEEeCCHH-------------------HHHHhcCEEEEEe
Confidence 88888777889999988432 2455678888874
No 248
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.48 E-value=0.0017 Score=67.58 Aligned_cols=158 Identities=15% Similarity=0.138 Sum_probs=78.8
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC----CCHHHHHHHHHHHhCCCCcc------
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME----MSGIQLAMRMLGSVGKLDQH------ 272 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E----~~~~~i~~R~~a~~~~i~~~------ 272 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-...-..| .|. +..+ .+..... +.++....-+..
T Consensus 18 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G-~i~-~~~~~~~~~~~~~~~-~~i~~~~q~~~~~~~~~~ 94 (490)
T PRK10938 18 TLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSG-ERQ-SQFSHITRLSFEQLQ-KLVSDEWQRNNTDMLSPG 94 (490)
T ss_pred ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCc-eEE-ECCcccccCCHHHHH-HHhceeccCcchhhcccc
Confidence 46666445899999999999999999999877764322223 343 3222 1222221 212211110000
Q ss_pred ------ccccC-CCCcchHHHHHHHHHHHhCCCeEEEc-CCCCCHHHHHH--HHHHHHHHcCCccEEEEcCcchhccCCC
Q psy2891 273 ------KLRTG-RLSSDDWPRINDSIKKINKSQLYIDE-TPSLNVIELRA--NSRRLSRQCGKIGVIIIDYLQLMSANSR 342 (452)
Q Consensus 273 ------~i~~g-~l~~~~~~~~~~a~~~l~~~~l~i~~-~~~~t~~~i~~--~i~~~~~~~~~~~~vvID~l~~i~~~~~ 342 (452)
.+... ....+..+++.++.+.+.-.. ..+. ...+|-.+-.. .++.+. . +++++++|--..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~--~-~p~lllLDEPt~------ 164 (490)
T PRK10938 95 EDDTGRTTAEIIQDEVKDPARCEQLAQQFGITA-LLDRRFKYLSTGETRKTLLCQALM--S-EPDLLILDEPFD------ 164 (490)
T ss_pred hhhccccHHHhcccchhHHHHHHHHHHHcCCHh-hhhCCcccCCHHHHHHHHHHHHHH--c-CCCEEEEcCCcc------
Confidence 00000 000112233334433331111 1111 23455444433 333332 3 499999998532
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCC
Q psy2891 343 GENRATEISEISRNLKGLAKEINCPILALSQLN 375 (452)
Q Consensus 343 ~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~ 375 (452)
+-+ ......+.+.|+.++++ +.+||+++|--
T Consensus 165 ~LD-~~~~~~l~~~l~~~~~~-g~tvii~tH~~ 195 (490)
T PRK10938 165 GLD-VASRQQLAELLASLHQS-GITLVLVLNRF 195 (490)
T ss_pred cCC-HHHHHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 112 23345677778887765 88888888753
No 249
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.48 E-value=0.0026 Score=59.51 Aligned_cols=36 Identities=14% Similarity=0.268 Sum_probs=29.4
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 18 ~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 455554458999999999999999999998887654
No 250
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.47 E-value=0.0063 Score=56.30 Aligned_cols=36 Identities=19% Similarity=0.404 Sum_probs=29.4
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+.+.|.|++|+|||||+.-++-..
T Consensus 22 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred cccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 455554458999999999999999999998777554
No 251
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.47 E-value=0.005 Score=55.15 Aligned_cols=185 Identities=18% Similarity=0.180 Sum_probs=98.2
Q ss_pred cCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC---CCCHHHHHHHHHHH--hCC--CCc
Q psy2891 199 TGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM---EMSGIQLAMRMLGS--VGK--LDQ 271 (452)
Q Consensus 199 tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~---E~~~~~i~~R~~a~--~~~--i~~ 271 (452)
.|=.-||.+---+++|++..|.||.|+|||||+..+.-...- .+..|.|+.. +.++.++..+..-. .+. +++
T Consensus 12 ~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p-~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpF 90 (259)
T COG4559 12 AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP-DSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPF 90 (259)
T ss_pred ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCC-CCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccce
Confidence 344556666445899999999999999999999999888753 3446777643 34555555443211 011 111
Q ss_pred --ccc------c--cCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCH-HHHHH-HHHHHHHHcC---CccEEEEcCcch
Q psy2891 272 --HKL------R--TGRLSSDDWPRINDSIKKINKSQLYIDETPSLNV-IELRA-NSRRLSRQCG---KIGVIIIDYLQL 336 (452)
Q Consensus 272 --~~i------~--~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~-~~i~~-~i~~~~~~~~---~~~~vvID~l~~ 336 (452)
..+ . .|.-+.++-+-...+.....-..+-=.+...+|= ++-+- ..|-+..-.+ ...+.++|.-+.
T Consensus 91 tv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPts 170 (259)
T COG4559 91 TVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTS 170 (259)
T ss_pred EHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCcc
Confidence 111 1 1222223322222333222111111111111221 22222 2233333332 235889987432
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCc
Q psy2891 337 MSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDE 411 (452)
Q Consensus 337 i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~ 411 (452)
..+-.. ...+++..++||++-+-.+.++|-+|- -.++||.+++|++-.
T Consensus 171 ------aLDi~H-Q~~tl~laR~la~~g~~V~~VLHDLNL--------------------AA~YaDrivll~~Gr 218 (259)
T COG4559 171 ------ALDIAH-QHHTLRLARQLAREGGAVLAVLHDLNL--------------------AAQYADRIVLLHQGR 218 (259)
T ss_pred ------ccchHH-HHHHHHHHHHHHhcCCcEEEEEccchH--------------------HHHhhheeeeeeCCe
Confidence 122222 236788999999987655666666663 356899999998754
No 252
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.47 E-value=0.0024 Score=58.30 Aligned_cols=37 Identities=27% Similarity=0.222 Sum_probs=29.8
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
+.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 14 ~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 3455554458899999999999999999998887543
No 253
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.47 E-value=0.0004 Score=66.59 Aligned_cols=158 Identities=14% Similarity=0.255 Sum_probs=81.6
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC----CCHHHHHHHHHHHhCCCCc-----cc
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME----MSGIQLAMRMLGSVGKLDQ-----HK 273 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E----~~~~~i~~R~~a~~~~i~~-----~~ 273 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++--.--..| .| ++..+ .+..++. +.++....-+. ..
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i-~~~g~~i~~~~~~~~~-~~i~~v~q~~~~~~~~~t 98 (279)
T PRK13650 22 TLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESG-QI-IIDGDLLTEENVWDIR-HKIGMVFQNPDNQFVGAT 98 (279)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EE-EECCEECCcCcHHHHH-hhceEEEcChHHhccccc
Confidence 56776556899999999999999999999977754321122 23 33222 1222222 11111111000 00
Q ss_pred ----cccC----CCCcchH-HHHHHHHHHHhCCCeEEEc-CCCCCHHHHHH--HHHHHHHHcCCccEEEEcCcchhccCC
Q psy2891 274 ----LRTG----RLSSDDW-PRINDSIKKINKSQLYIDE-TPSLNVIELRA--NSRRLSRQCGKIGVIIIDYLQLMSANS 341 (452)
Q Consensus 274 ----i~~g----~l~~~~~-~~~~~a~~~l~~~~l~i~~-~~~~t~~~i~~--~i~~~~~~~~~~~~vvID~l~~i~~~~ 341 (452)
+.-+ .++..+. .++.++.+.+. ..-+... ...+|-.+.+. .++.+. . +++++++|.-..-
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~g-L~~~~~~~~~~LSgGq~qrv~lAral~--~-~p~lLlLDEPt~~---- 170 (279)
T PRK13650 99 VEDDVAFGLENKGIPHEEMKERVNEALELVG-MQDFKEREPARLSGGQKQRVAIAGAVA--M-RPKIIILDEATSM---- 170 (279)
T ss_pred HHHHHHhhHHhCCCCHHHHHHHHHHHHHHCC-CHhHhhCCcccCCHHHHHHHHHHHHHH--c-CCCEEEEECCccc----
Confidence 0000 1222221 22333333321 1101111 23556555433 233332 2 4999999995431
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecC
Q psy2891 342 RGENRATEISEISRNLKGLAKEINCPILALSQL 374 (452)
Q Consensus 342 ~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql 374 (452)
-+. .....+.+.|+.++++.|.+||+++|-
T Consensus 171 --LD~-~~~~~l~~~l~~l~~~~g~tilivtH~ 200 (279)
T PRK13650 171 --LDP-EGRLELIKTIKGIRDDYQMTVISITHD 200 (279)
T ss_pred --CCH-HHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 222 234577888888988889999999874
No 254
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.47 E-value=0.0023 Score=60.37 Aligned_cols=65 Identities=17% Similarity=0.115 Sum_probs=51.0
Q ss_pred cccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHH
Q psy2891 195 TGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAM 260 (452)
Q Consensus 195 ~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~ 260 (452)
..+.||+..+|-+. .+-+|+=..|.|++|+|||+++.+++.++..+....++|....+..+++.+
T Consensus 51 e~L~TGIr~ID~l~-pig~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~Ev~e 115 (274)
T cd01133 51 EILETGIKVIDLLA-PYAKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTREGND 115 (274)
T ss_pred cccccCceeeeccC-CcccCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHH
Confidence 46899999999864 588999999999999999999999999987543344666655555555443
No 255
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.47 E-value=0.00039 Score=62.94 Aligned_cols=154 Identities=18% Similarity=0.221 Sum_probs=83.0
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCC---------
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLS--------- 280 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~--------- 280 (452)
-+.+|+++.+.|+.|+||||++..++-..-. ....|.|---+.+...-..|.-.-++-++..+-.-..++
T Consensus 25 ~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~-~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~ 103 (237)
T COG0410 25 EVERGEIVALLGRNGAGKTTLLKTIMGLVRP-RSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGA 103 (237)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhh
Confidence 4789999999999999999999988865522 223344433332222222332222222222110000111
Q ss_pred ---------cchHHHHHHHHHHHhCCCeEEEcCCCCC--HHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHH
Q psy2891 281 ---------SDDWPRINDSIKKINKSQLYIDETPSLN--VIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATE 349 (452)
Q Consensus 281 ---------~~~~~~~~~a~~~l~~~~l~i~~~~~~t--~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~ 349 (452)
..+.+.+.+.+-.|++..- .....+| -.+..+..+.+.. +|++.++|--+.=-. -.-
T Consensus 104 ~~~~~~~~~~~~~e~v~~lFP~Lker~~--~~aG~LSGGEQQMLAiaRALm~---~PklLLLDEPs~GLa-------P~i 171 (237)
T COG0410 104 YARRDKEAQERDLEEVYELFPRLKERRN--QRAGTLSGGEQQMLAIARALMS---RPKLLLLDEPSEGLA-------PKI 171 (237)
T ss_pred hcccccccccccHHHHHHHChhHHHHhc--CcccCCChHHHHHHHHHHHHhc---CCCEEEecCCccCcC-------HHH
Confidence 0012222222222221100 0012233 2456666666654 599999998543111 134
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCc
Q psy2891 350 ISEISRNLKGLAKEINCPILALSQLNR 376 (452)
Q Consensus 350 ~~~i~~~Lk~lA~~~~i~vi~l~ql~r 376 (452)
+.++.+.++.+.++.+++|+++-|--+
T Consensus 172 v~~I~~~i~~l~~~~g~tIlLVEQn~~ 198 (237)
T COG0410 172 VEEIFEAIKELRKEGGMTILLVEQNAR 198 (237)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeccHH
Confidence 678889999999998999999987543
No 256
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.46 E-value=0.0014 Score=54.74 Aligned_cols=39 Identities=15% Similarity=0.034 Sum_probs=30.6
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHh-CCCcEEEEeCCCC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIE-NKLPVAIFSMEMS 254 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~-~g~~vl~~s~E~~ 254 (452)
-++|.|+||+|||..+...+...... .+.++++++.-..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~ 41 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRE 41 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHH
Confidence 37899999999999999999988643 3467888865443
No 257
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.46 E-value=0.0013 Score=65.36 Aligned_cols=135 Identities=17% Similarity=0.238 Sum_probs=76.4
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHH--HHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHI--AIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIK 292 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~--a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~ 292 (452)
.+++|.|.||+|||.+|++++..+ . ..+..++|++.--+........++... .. .............+.
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~-~~~~~~~~l~~n~~l~~~l~~~l~~~~---~~-----~~~~~~~~~~~~~i~ 72 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNS-EEGKKVLYLCGNHPLRNKLREQLAKKY---NP-----KLKKSDFRKPTSFIN 72 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhcc-ccCCceEEEEecchHHHHHHHHHhhhc---cc-----chhhhhhhhhHHHHh
Confidence 489999999999999999999998 4 357889998887777665555554322 00 000111112222222
Q ss_pred HHh-------CCCeEEEcCC-CCCHH-------HHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHH
Q psy2891 293 KIN-------KSQLYIDETP-SLNVI-------ELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNL 357 (452)
Q Consensus 293 ~l~-------~~~l~i~~~~-~~t~~-------~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~L 357 (452)
.+. ...+.|.|+. .+.-. .-...+..+.... ++-++++|.-|.+.+... ... ..+
T Consensus 73 ~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~~-kv~v~f~D~~Q~i~~~e~--~~~-------~~l 142 (352)
T PF09848_consen 73 NYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKRA-KVVVFFYDENQSIRPSEI--GTL-------ENL 142 (352)
T ss_pred hcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhcC-CEEEEEEccccEeecccC--CCH-------HHH
Confidence 222 2345554432 22110 0112333343333 488889999999987541 111 126
Q ss_pred HHHHHHhCCcE
Q psy2891 358 KGLAKEINCPI 368 (452)
Q Consensus 358 k~lA~~~~i~v 368 (452)
+.++.+.++.+
T Consensus 143 ~~~~~~~~~~~ 153 (352)
T PF09848_consen 143 EEIAENLGIEV 153 (352)
T ss_pred HHHHHhcCCcc
Confidence 66666766664
No 258
>KOG0744|consensus
Probab=97.44 E-value=0.00053 Score=64.83 Aligned_cols=124 Identities=22% Similarity=0.323 Sum_probs=77.3
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEE-EeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHHH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAI-FSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKK 293 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~-~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~ 293 (452)
.++++.||||.|||++|..+|-+...+...+=.| .-.|.+...+..++.+ .+|
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFs----------ESg---------------- 231 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFS----------ESG---------------- 231 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHh----------hhh----------------
Confidence 4899999999999999999998886542111000 1245555555555543 112
Q ss_pred HhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCC-----CC--CCHHHHHHHHHHHHHHHHHHhCC
Q psy2891 294 INKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANS-----RG--ENRATEISEISRNLKGLAKEINC 366 (452)
Q Consensus 294 l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~-----~~--~~~~~~~~~i~~~Lk~lA~~~~i 366 (452)
-.+..+...|..+....|..-+|.||..-.+.... +. .+.-..+..+..+|.++-+..|+
T Consensus 232 -------------KlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nv 298 (423)
T KOG0744|consen 232 -------------KLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNV 298 (423)
T ss_pred -------------hHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCE
Confidence 12344555555665555556778888877655321 11 22233456777888888888899
Q ss_pred cEEEEecCCcc
Q psy2891 367 PILALSQLNRS 377 (452)
Q Consensus 367 ~vi~l~ql~r~ 377 (452)
-+++++-+...
T Consensus 299 liL~TSNl~~s 309 (423)
T KOG0744|consen 299 LILATSNLTDS 309 (423)
T ss_pred EEEeccchHHH
Confidence 99888876543
No 259
>KOG0780|consensus
Probab=97.44 E-value=0.032 Score=54.36 Aligned_cols=43 Identities=16% Similarity=0.187 Sum_probs=37.6
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM 253 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~ 253 (452)
+..+-.++++.|-.|+||||.|..+|.+.- ++|++|+.++.+-
T Consensus 97 ~K~kpsVimfVGLqG~GKTTtc~KlA~y~k-kkG~K~~LvcaDT 139 (483)
T KOG0780|consen 97 KKGKPSVIMFVGLQGSGKTTTCTKLAYYYK-KKGYKVALVCADT 139 (483)
T ss_pred ccCCCcEEEEEeccCCCcceeHHHHHHHHH-hcCCceeEEeecc
Confidence 455667999999999999999999999984 6899999998874
No 260
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.44 E-value=0.0015 Score=60.63 Aligned_cols=36 Identities=22% Similarity=0.346 Sum_probs=29.7
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+.+.|.|++|+|||||+.-++-..
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 466664568999999999999999999998777543
No 261
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=97.44 E-value=0.0005 Score=67.15 Aligned_cols=143 Identities=20% Similarity=0.332 Sum_probs=81.1
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCC--------cEE--------EEeC----CCCHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKL--------PVA--------IFSM----EMSGIQLAMRM 262 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~--------~vl--------~~s~----E~~~~~i~~R~ 262 (452)
.|+.+.--++||+++.|.|.+|+|||++..-++-.+- ..+. .|- .+.. +.....+.+.+
T Consensus 398 vlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~-~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl 476 (593)
T COG2401 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQK-GRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHL 476 (593)
T ss_pred eeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhh-cccccccCCCCCceeccccchhhccCcccccccCchhHHHHH
Confidence 4455544589999999999999999999988776653 2222 010 0111 11111122222
Q ss_pred HHHhCCCCccccccCCCCcchHHHHHHHHHHHhC-----CCeEEEcCCCCCHHH-HHHHHHHHHHHcCCccEEEEcCcch
Q psy2891 263 LGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINK-----SQLYIDETPSLNVIE-LRANSRRLSRQCGKIGVIIIDYLQL 336 (452)
Q Consensus 263 ~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~-----~~l~i~~~~~~t~~~-i~~~i~~~~~~~~~~~~vvID~l~~ 336 (452)
.+.. |+ +..|.+-|+. .-+|-.....++.++ -+..+.++.++ ++.+.++|-+..
T Consensus 477 ~s~t----------GD--------~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllae--rpn~~~iDEF~A 536 (593)
T COG2401 477 RSKT----------GD--------LNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAE--RPNVLLIDEFAA 536 (593)
T ss_pred hhcc----------Cc--------hhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhc--CCCcEEhhhhhh
Confidence 1110 11 1122222321 123333333444333 34455555554 589999999866
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEec
Q psy2891 337 MSANSRGENRATEISEISRNLKGLAKEINCPILALSQ 373 (452)
Q Consensus 337 i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~q 373 (452)
.... - ....+++.+..+|++.++|++++.|
T Consensus 537 hLD~------~-TA~rVArkiselaRe~giTlivvTh 566 (593)
T COG2401 537 HLDE------L-TAVRVARKISELAREAGITLIVVTH 566 (593)
T ss_pred hcCH------H-HHHHHHHHHHHHHHHhCCeEEEEec
Confidence 5432 1 2347889999999999999999876
No 262
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.44 E-value=0.0012 Score=63.02 Aligned_cols=36 Identities=14% Similarity=0.217 Sum_probs=29.3
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 24 ~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455554458999999999999999999998777543
No 263
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.44 E-value=0.0039 Score=57.66 Aligned_cols=173 Identities=14% Similarity=0.193 Sum_probs=87.4
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC----CCHHHHHHHHHHHhCCCCc---cccc
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME----MSGIQLAMRMLGSVGKLDQ---HKLR 275 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E----~~~~~i~~R~~a~~~~i~~---~~i~ 275 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..-...| .|. +..+ .+.... .+.++....-+. ..+.
T Consensus 22 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~-~~g~~~~~~~~~~~-~~~i~~~~q~~~l~~~tv~ 98 (225)
T PRK10247 22 ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSG-TLL-FEGEDISTLKPEIY-RQQVSYCAQTPTLFGDTVY 98 (225)
T ss_pred eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCC-eEE-ECCEEcCcCCHHHH-HhccEEEecccccccccHH
Confidence 45555445899999999999999999999877654311122 233 2221 122221 111111111000 0000
Q ss_pred c----C-CC--CcchHHHHHHHHHHHhCCCeE---EE-cCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCC
Q psy2891 276 T----G-RL--SSDDWPRINDSIKKINKSQLY---ID-ETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGE 344 (452)
Q Consensus 276 ~----g-~l--~~~~~~~~~~a~~~l~~~~l~---i~-~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~ 344 (452)
+ + .+ ...+..++.+..+.+ .+. .. ....+|-.+.+...-...--. +++++++|.-.. +-
T Consensus 99 enl~~~~~~~~~~~~~~~~~~~l~~~---~l~~~~~~~~~~~LS~G~~qrv~laral~~-~p~llllDEPt~------~L 168 (225)
T PRK10247 99 DNLIFPWQIRNQQPDPAIFLDDLERF---ALPDTILTKNIAELSGGEKQRISLIRNLQF-MPKVLLLDEITS------AL 168 (225)
T ss_pred HHHHhHHhhcCCChHHHHHHHHHHHc---CCChHHhcCCcccCCHHHHHHHHHHHHHhc-CCCEEEEeCCcc------cC
Confidence 0 0 00 001111222333322 221 11 123455555443322222223 499999998532 12
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEec
Q psy2891 345 NRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYR 409 (452)
Q Consensus 345 ~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r 409 (452)
+. .....+.+.|+.++++.+.+||+++|-.. .++ .||.++.+.+
T Consensus 169 D~-~~~~~l~~~l~~~~~~~~~tvii~sh~~~-------------------~~~-~~d~i~~l~~ 212 (225)
T PRK10247 169 DE-SNKHNVNEIIHRYVREQNIAVLWVTHDKD-------------------EIN-HADKVITLQP 212 (225)
T ss_pred CH-HHHHHHHHHHHHHHHhcCCEEEEEECChH-------------------HHH-hCCEEEEEec
Confidence 22 23456777888888888999999987432 233 4899999854
No 264
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.43 E-value=0.0029 Score=59.65 Aligned_cols=36 Identities=17% Similarity=0.374 Sum_probs=29.2
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 18 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 18 GCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred EeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 355554458999999999999999999998777654
No 265
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.43 E-value=0.0019 Score=61.07 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=28.5
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-.
T Consensus 17 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (255)
T PRK11231 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARL 51 (255)
T ss_pred EEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34554345889999999999999999999888754
No 266
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.43 E-value=0.0012 Score=63.09 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=29.3
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-.
T Consensus 17 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 51 (275)
T PRK13639 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGI 51 (275)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46666556899999999999999999999877653
No 267
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.43 E-value=0.0035 Score=57.75 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=29.2
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++--.
T Consensus 17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 17 AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 455554458999999999999999999988777543
No 268
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.42 E-value=0.00093 Score=57.05 Aligned_cols=141 Identities=24% Similarity=0.354 Sum_probs=73.6
Q ss_pred EEEEeCCCCChhHHHHHHHHHHHHhCCCcEE-EEeCCCCHHHHHHHHHHHhCCCCccccccCC---CCcchHHHHHHHHH
Q psy2891 217 IIVAGRPSMGKTAFSLNIGEHIAIENKLPVA-IFSMEMSGIQLAMRMLGSVGKLDQHKLRTGR---LSSDDWPRINDSIK 292 (452)
Q Consensus 217 ~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl-~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~---l~~~~~~~~~~a~~ 292 (452)
+.|+|+||+||||+++.++-.+. +.|.+|. |++-|.... -. ..|...-.+.+|. |......+
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~L~-~~g~kvgGf~t~EVR~g--Gk-----R~GF~Ivdl~tg~~~~la~~~~~~------ 73 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEKLR-EKGYKVGGFITPEVREG--GK-----RIGFKIVDLATGEEGILARVGFSR------ 73 (179)
T ss_pred EEEeCCCCccHHHHHHHHHHHHH-hcCceeeeEEeeeeecC--Ce-----EeeeEEEEccCCceEEEEEcCCCC------
Confidence 68999999999999999998875 4677765 566665422 11 1333333333331 11111000
Q ss_pred HHhCCCeEEEcCCCCCHHHHHHH-HHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEE
Q psy2891 293 KINKSQLYIDETPSLNVIELRAN-SRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILAL 371 (452)
Q Consensus 293 ~l~~~~l~i~~~~~~t~~~i~~~-i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l 371 (452)
.+=..+.+ +++.+... +..+.+.....|+||||-+..|.... ..+.+.+.... +.+-|+|++
T Consensus 74 -~rvGkY~V------~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks---------~~f~~~ve~vl-~~~kpliat 136 (179)
T COG1618 74 -PRVGKYGV------NVEGLEEIAIPALRRALEEADVIIIDEIGPMELKS---------KKFREAVEEVL-KSGKPLIAT 136 (179)
T ss_pred -cccceEEe------eHHHHHHHhHHHHHHHhhcCCEEEEecccchhhcc---------HHHHHHHHHHh-cCCCcEEEE
Confidence 00011222 23333321 22233222236999999999887643 12233333333 356778877
Q ss_pred ecCCcchhhcCCCCCCchhhhhhc
Q psy2891 372 SQLNRSLEQRQNKRPIMSDLRESG 395 (452)
Q Consensus 372 ~ql~r~~~~r~~~~p~l~dl~~S~ 395 (452)
-|-+- ..|.+..++.-+
T Consensus 137 lHrrs-------r~P~v~~ik~~~ 153 (179)
T COG1618 137 LHRRS-------RHPLVQRIKKLG 153 (179)
T ss_pred Eeccc-------CChHHHHhhhcC
Confidence 77431 236566655433
No 269
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.42 E-value=0.0032 Score=62.78 Aligned_cols=159 Identities=13% Similarity=0.234 Sum_probs=79.2
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC----CCHHHHHHHHHHHhC-------CCCc
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME----MSGIQLAMRMLGSVG-------KLDQ 271 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E----~~~~~i~~R~~a~~~-------~i~~ 271 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++--.--..| .| ++..+ .++. .|-++... +.+.
T Consensus 29 ~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G-~I-~~~g~~i~~~~~~---~r~ig~vfQ~~~lfp~ltv 103 (375)
T PRK09452 29 VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSG-RI-MLDGQDITHVPAE---NRHVNTVFQSYALFPHMTV 103 (375)
T ss_pred EEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EE-EECCEECCCCCHH---HCCEEEEecCcccCCCCCH
Confidence 45655445899999999999999999999877753321112 12 22221 1111 11111000 0000
Q ss_pred c-cc----ccCCCCcchH-HHHHHHHHHHhCCCeEEEc-CCCCCHHHHH--HHHHHHHHHcCCccEEEEcCcchhccCCC
Q psy2891 272 H-KL----RTGRLSSDDW-PRINDSIKKINKSQLYIDE-TPSLNVIELR--ANSRRLSRQCGKIGVIIIDYLQLMSANSR 342 (452)
Q Consensus 272 ~-~i----~~g~l~~~~~-~~~~~a~~~l~~~~l~i~~-~~~~t~~~i~--~~i~~~~~~~~~~~~vvID~l~~i~~~~~ 342 (452)
. .+ .....+..++ +++.+..+.+.-.. +.+. ...+|-.+-+ +.++.+.. +|+++++|.-..
T Consensus 104 ~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~p~~LSgGq~QRVaLARaL~~---~P~llLLDEP~s------ 173 (375)
T PRK09452 104 FENVAFGLRMQKTPAAEITPRVMEALRMVQLEE-FAQRKPHQLSGGQQQRVAIARAVVN---KPKVLLLDESLS------ 173 (375)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHHhc---CCCEEEEeCCCC------
Confidence 0 00 0001222222 23333333221111 1111 1234544433 33333432 499999998421
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcc
Q psy2891 343 GENRATEISEISRNLKGLAKEINCPILALSQLNRS 377 (452)
Q Consensus 343 ~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~ 377 (452)
+-+. ..-..+...|+.+.++.++++|+++|-..+
T Consensus 174 ~LD~-~~r~~l~~~L~~l~~~~g~tiI~vTHd~~e 207 (375)
T PRK09452 174 ALDY-KLRKQMQNELKALQRKLGITFVFVTHDQEE 207 (375)
T ss_pred cCCH-HHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 1222 223467788889999999999999985443
No 270
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.42 E-value=0.0013 Score=66.58 Aligned_cols=38 Identities=29% Similarity=0.385 Sum_probs=31.2
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHhC-CCcEEEEeCC
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIEN-KLPVAIFSME 252 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~~-g~~vl~~s~E 252 (452)
...+|.|+||+|||.|+..++..+.... +.+|+|++.+
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~ 175 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE 175 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH
Confidence 4678999999999999998888875422 6789999765
No 271
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.42 E-value=0.0035 Score=59.76 Aligned_cols=35 Identities=14% Similarity=0.228 Sum_probs=28.8
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-.
T Consensus 16 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 45555445899999999999999999999877654
No 272
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.41 E-value=0.0018 Score=64.18 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=24.9
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
-+.+|+++.|.|++|+|||||+.-++-.
T Consensus 20 ~i~~Ge~~~l~G~nGsGKSTLl~~iaGl 47 (352)
T PRK11144 20 TLPAQGITAIFGRSGAGKTSLINAISGL 47 (352)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999999877754
No 273
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.41 E-value=0.002 Score=60.33 Aligned_cols=36 Identities=25% Similarity=0.418 Sum_probs=29.8
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 17 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 17 ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 466654468999999999999999999998887643
No 274
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.40 E-value=0.0025 Score=57.72 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=29.3
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+.+.|.|++|+|||||+.-++-..
T Consensus 15 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456554458999999999999999999998776643
No 275
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.40 E-value=0.0023 Score=61.02 Aligned_cols=36 Identities=19% Similarity=0.439 Sum_probs=29.0
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 16 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~ 51 (272)
T PRK13547 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDL 51 (272)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455554458999999999999999999998776543
No 276
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.39 E-value=0.00074 Score=61.69 Aligned_cols=182 Identities=15% Similarity=0.181 Sum_probs=108.1
Q ss_pred cCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC----CCHHHHHHHHHHHhCCCCc---
Q psy2891 199 TGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME----MSGIQLAMRMLGSVGKLDQ--- 271 (452)
Q Consensus 199 tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E----~~~~~i~~R~~a~~~~i~~--- 271 (452)
-|+..+|.+.--+.+|+++.|.||.|+|||||..-+.-.. +.....++|..+ +++.++..+=+++...+..
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~--~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~ 92 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFY--KPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFP 92 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccc--cCCCceEEECCcccCCCCHHHHHhccceeecccccccC
Confidence 3677788886679999999999999999999865444333 122334555555 6677766655544333220
Q ss_pred -----cccccC---------C-----CCcchHHHHHHHHHHHhCCCeE---EEcCCCCCHH--HHHHHHHHHHHHcCCcc
Q psy2891 272 -----HKLRTG---------R-----LSSDDWPRINDSIKKINKSQLY---IDETPSLNVI--ELRANSRRLSRQCGKIG 327 (452)
Q Consensus 272 -----~~i~~g---------~-----l~~~~~~~~~~a~~~l~~~~l~---i~~~~~~t~~--~i~~~i~~~~~~~~~~~ 327 (452)
+.+.-+ . ...++-+....|..+|....+. -.....++-. ...+..+.+.. +|+
T Consensus 93 ~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~---~P~ 169 (250)
T COG0411 93 GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALAT---QPK 169 (250)
T ss_pred CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhc---CCC
Confidence 000000 0 0112233344455555432222 1112344443 34445555543 499
Q ss_pred EEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEE
Q psy2891 328 VIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFI 407 (452)
Q Consensus 328 ~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l 407 (452)
++++|-- ..+.|. .+..++...++.+.++.+++|+++-|-=+ -+.+.||.|+.|
T Consensus 170 lLLLDEP------aAGln~-~e~~~l~~~i~~i~~~~g~tillIEHdM~-------------------~Vm~l~dri~Vl 223 (250)
T COG0411 170 LLLLDEP------AAGLNP-EETEELAELIRELRDRGGVTILLIEHDMK-------------------LVMGLADRIVVL 223 (250)
T ss_pred EEEecCc------cCCCCH-HHHHHHHHHHHHHHhcCCcEEEEEEeccH-------------------HHhhhccEEEec
Confidence 9999983 223343 34567888888888889999999977321 356789999998
Q ss_pred ecCc
Q psy2891 408 YRDE 411 (452)
Q Consensus 408 ~r~~ 411 (452)
..-+
T Consensus 224 ~~G~ 227 (250)
T COG0411 224 NYGE 227 (250)
T ss_pred cCCc
Confidence 7654
No 277
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.39 E-value=0.016 Score=59.41 Aligned_cols=92 Identities=15% Similarity=0.322 Sum_probs=56.3
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCC-CcEEEEeCCCCHHHHH--HHHHHHhCCCCccccccCCCCcchHHHH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENK-LPVAIFSMEMSGIQLA--MRMLGSVGKLDQHKLRTGRLSSDDWPRI 287 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g-~~vl~~s~E~~~~~i~--~R~~a~~~~i~~~~i~~g~l~~~~~~~~ 287 (452)
+.+|.++.+.|++|+||||.+..+|.....+.| .+|.+++.+-..--.. -+.++...|++......+ .+ +
T Consensus 253 ~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~----~D---l 325 (484)
T PRK06995 253 LDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDA----AD---L 325 (484)
T ss_pred ccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCc----hh---H
Confidence 346789999999999999999999998865555 4899998875311111 234455566655432221 11 1
Q ss_pred HHHHHHHhCCCeEEEcCCCCCH
Q psy2891 288 NDSIKKINKSQLYIDETPSLNV 309 (452)
Q Consensus 288 ~~a~~~l~~~~l~i~~~~~~t~ 309 (452)
......+.+....+.|+.+.+.
T Consensus 326 ~~aL~~L~d~d~VLIDTaGr~~ 347 (484)
T PRK06995 326 RLALSELRNKHIVLIDTIGMSQ 347 (484)
T ss_pred HHHHHhccCCCeEEeCCCCcCh
Confidence 2233345555555556655443
No 278
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.39 E-value=0.0011 Score=67.72 Aligned_cols=36 Identities=17% Similarity=0.076 Sum_probs=31.3
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
-.+|.|+||+|||.|+..++..+.. .|.+|+|++.+
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~-~~~~v~yi~~~ 178 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRE-SGGKILYVRSE 178 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH-cCCCEEEeeHH
Confidence 4789999999999999999988854 68999999865
No 279
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=97.39 E-value=0.0027 Score=62.31 Aligned_cols=164 Identities=15% Similarity=0.134 Sum_probs=82.6
Q ss_pred ccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC----CCHHHHHH--HHHHHhCC-----C
Q psy2891 201 FFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME----MSGIQLAM--RMLGSVGK-----L 269 (452)
Q Consensus 201 ~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E----~~~~~i~~--R~~a~~~~-----i 269 (452)
...|+.+.--+.+|+++.|.|++|+|||||+.-++--..- ....|.| ..+ ++..++.. +-++.... +
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p-~~G~I~~-~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l 111 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA-TDGEVAW-LGKDLLGMKDDEWRAVRSDIQMIFQDPLASL 111 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC-CCcEEEE-CCEECCcCCHHHHHHHhCceEEEecCchhhc
Confidence 3456666445899999999999999999999988754322 2233443 222 22222211 11111111 0
Q ss_pred C-cccccc----------CCCCcchH-HHHHHHHHHHhCCCeEEEc-CCCCCHHHHHHHHHHHHHHcCCccEEEEcCcch
Q psy2891 270 D-QHKLRT----------GRLSSDDW-PRINDSIKKINKSQLYIDE-TPSLNVIELRANSRRLSRQCGKIGVIIIDYLQL 336 (452)
Q Consensus 270 ~-~~~i~~----------g~l~~~~~-~~~~~a~~~l~~~~l~i~~-~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~ 336 (452)
. ...+.+ +.++.++. +++.+..+.+.-.+-+... ...+|-.+.+...-...-.. +++++|.|.-..
T Consensus 112 ~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~-~P~llilDEPts 190 (331)
T PRK15079 112 NPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALIL-EPKLIICDEPVS 190 (331)
T ss_pred CCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhc-CCCEEEEeCCCc
Confidence 0 000000 01222221 1222223222111111121 23456555443322222223 499999998543
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecC
Q psy2891 337 MSANSRGENRATEISEISRNLKGLAKEINCPILALSQL 374 (452)
Q Consensus 337 i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql 374 (452)
- -+. .....+.+.|+.+.++.+.++|+++|-
T Consensus 191 ~------LD~-~~~~~i~~lL~~l~~~~~~til~iTHd 221 (331)
T PRK15079 191 A------LDV-SIQAQVVNLLQQLQREMGLSLIFIAHD 221 (331)
T ss_pred c------CCH-HHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 2 122 223477788888888889999999874
No 280
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.39 E-value=0.00087 Score=64.93 Aligned_cols=44 Identities=20% Similarity=0.337 Sum_probs=38.2
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS 254 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~ 254 (452)
-..++.++.|.|+||+|||||+..++.... ..|.+|.+++++.+
T Consensus 30 ~~~~~~~i~i~G~~G~GKttl~~~l~~~~~-~~~~~v~~i~~D~~ 73 (300)
T TIGR00750 30 YTGNAHRVGITGTPGAGKSTLLEALGMELR-RRGLKVAVIAVDPS 73 (300)
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEecCCC
Confidence 345688999999999999999999999876 46899999998864
No 281
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=97.38 E-value=0.0044 Score=65.08 Aligned_cols=37 Identities=16% Similarity=0.372 Sum_probs=30.7
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
..|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 23 ~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~ 59 (529)
T PRK15134 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLL 59 (529)
T ss_pred eeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4566665568999999999999999999998877544
No 282
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.38 E-value=0.005 Score=59.03 Aligned_cols=35 Identities=14% Similarity=0.220 Sum_probs=29.4
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-.
T Consensus 22 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46666456899999999999999999999877754
No 283
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.38 E-value=0.0028 Score=60.44 Aligned_cols=35 Identities=17% Similarity=0.357 Sum_probs=29.2
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-.
T Consensus 24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (271)
T PRK13632 24 ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGL 58 (271)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46666556899999999999999999999877654
No 284
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.37 E-value=0.0036 Score=56.77 Aligned_cols=36 Identities=28% Similarity=0.364 Sum_probs=29.0
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+.+.|.|++|+|||||+.-++-..
T Consensus 16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455554458899999999999999999998776543
No 285
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.37 E-value=0.00046 Score=67.35 Aligned_cols=165 Identities=15% Similarity=0.246 Sum_probs=84.9
Q ss_pred CccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhC-------CCCcc
Q psy2891 200 GFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVG-------KLDQH 272 (452)
Q Consensus 200 g~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~-------~i~~~ 272 (452)
++..+|.+.--+++|+++.+-||+||||||++.-||--..-. +..+.+-.-..+.-....|-+.... +++..
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~-~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~ 95 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS-SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVE 95 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEECCCCChhhcccceeecCcccCCCCcHH
Confidence 467788876679999999999999999999999888644221 2223322111111111122221110 01100
Q ss_pred c-----cc-cCCCCcchH-HHHHHHHHHHhCCCeEEEcCCCCCHHH--HHHHHHHHHHHcCCccEEEEcCcchhccCCCC
Q psy2891 273 K-----LR-TGRLSSDDW-PRINDSIKKINKSQLYIDETPSLNVIE--LRANSRRLSRQCGKIGVIIIDYLQLMSANSRG 343 (452)
Q Consensus 273 ~-----i~-~g~l~~~~~-~~~~~a~~~l~~~~l~i~~~~~~t~~~--i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~ 343 (452)
. ++ .+...+++. +++.++.+.+.-..+--.....+|=.+ =.+.+|.++. +|+++..|-- -
T Consensus 96 ~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~---~P~vLLLDEP------l-- 164 (352)
T COG3842 96 ENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVP---EPKVLLLDEP------L-- 164 (352)
T ss_pred HHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhc---CcchhhhcCc------c--
Confidence 0 00 122333322 345555443321111111111233222 2233444432 4899988862 1
Q ss_pred CCHHHHH-HHHHHHHHHHHHHhCCcEEEEecCCc
Q psy2891 344 ENRATEI-SEISRNLKGLAKEINCPILALSQLNR 376 (452)
Q Consensus 344 ~~~~~~~-~~i~~~Lk~lA~~~~i~vi~l~ql~r 376 (452)
.+-+..+ .++-..||.+.++.|++.|.+.|=-.
T Consensus 165 SaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe 198 (352)
T COG3842 165 SALDAKLREQMRKELKELQRELGITFVYVTHDQE 198 (352)
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 1122222 35567899999999999999998433
No 286
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.37 E-value=0.0019 Score=66.10 Aligned_cols=38 Identities=24% Similarity=0.249 Sum_probs=30.5
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHH-hCCCcEEEEeCCC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAI-ENKLPVAIFSMEM 253 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~-~~g~~vl~~s~E~ 253 (452)
-.+|.|++|+|||.|+..++..+.. ..+.+|+|++.|.
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~ 181 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDE 181 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 4789999999999999888776543 3478999998863
No 287
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.37 E-value=0.00084 Score=72.20 Aligned_cols=123 Identities=18% Similarity=0.169 Sum_probs=79.8
Q ss_pred cCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEE-eCCCCHHHHHHHHHHHhCCCC---ccccccCCCCcch
Q psy2891 208 TSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIF-SMEMSGIQLAMRMLGSVGKLD---QHKLRTGRLSSDD 283 (452)
Q Consensus 208 ~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~-s~E~~~~~i~~R~~a~~~~i~---~~~i~~g~l~~~~ 283 (452)
...+.+|+-..|.||||+|||||.+-+++-.|. .|.+|+|+ .+..-..|...|+....-... ..-..++.++..+
T Consensus 91 akR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~-kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~e 169 (1187)
T COG1110 91 AKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAK-KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKE 169 (1187)
T ss_pred HHHHHcCCceEEEcCCCCchhHHHHHHHHHHHh-cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHH
Confidence 456888999999999999999999999999986 57888875 566666788888866542222 1111345666554
Q ss_pred HHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhcc
Q psy2891 284 WPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 284 ~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~ 339 (452)
-+ ++.+++.+..+.|.=+ |..=+....+.+.. + ++|+||||....+--
T Consensus 170 ke---e~le~i~~gdfdIlit---Ts~FL~k~~e~L~~-~-kFdfifVDDVDA~Lk 217 (1187)
T COG1110 170 KE---EALERIESGDFDILIT---TSQFLSKRFEELSK-L-KFDFIFVDDVDAILK 217 (1187)
T ss_pred HH---HHHHHHhcCCccEEEE---eHHHHHhhHHHhcc-c-CCCEEEEccHHHHHh
Confidence 33 4556676544443211 11223333444433 3 599999999987553
No 288
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.36 E-value=0.0028 Score=64.92 Aligned_cols=182 Identities=16% Similarity=0.228 Sum_probs=99.6
Q ss_pred ccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC--CCHHHHHH--HHHHHhC-----CCCc
Q psy2891 201 FFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME--MSGIQLAM--RMLGSVG-----KLDQ 271 (452)
Q Consensus 201 ~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E--~~~~~i~~--R~~a~~~-----~i~~ 271 (452)
+..+|.+.--+++|+.+-|.|.+|+||||++.-++--.- -.+..+.|.--+ ++..+... |-+.... .++.
T Consensus 304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~-P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnP 382 (539)
T COG1123 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP-PSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNP 382 (539)
T ss_pred eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCc
Confidence 456677644689999999999999999999998776442 234445554422 23221111 1111111 1111
Q ss_pred cc-cc---------cCCCCcchHH-HHHHHHHHHhCCCeEEE-cCCCCCHHHHHH--HHHHHHHHcCCccEEEEcCcchh
Q psy2891 272 HK-LR---------TGRLSSDDWP-RINDSIKKINKSQLYID-ETPSLNVIELRA--NSRRLSRQCGKIGVIIIDYLQLM 337 (452)
Q Consensus 272 ~~-i~---------~g~l~~~~~~-~~~~a~~~l~~~~l~i~-~~~~~t~~~i~~--~i~~~~~~~~~~~~vvID~l~~i 337 (452)
+. +. .+.....++. ++.+..+...-.+-+.. ....+|=.+-.. .++.+. . +|+++|.|--...
T Consensus 383 r~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa--~-~P~lli~DEp~Sa 459 (539)
T COG1123 383 RMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALA--L-EPKLLILDEPVSA 459 (539)
T ss_pred cccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHh--c-CCCEEEecCCccc
Confidence 10 00 0111111221 23333332221111111 122344333322 233332 2 4999999985432
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcc
Q psy2891 338 SANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEV 412 (452)
Q Consensus 338 ~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~ 412 (452)
- +..-...+++-|+.+-+++|++.++++|= + ..+++.||.|..+++-+.
T Consensus 460 L-------Dvsvqa~VlnLl~~lq~e~g~t~lfISHD----------------l---~vV~~i~drv~vm~~G~i 508 (539)
T COG1123 460 L-------DVSVQAQVLNLLKDLQEELGLTYLFISHD----------------L---AVVRYIADRVAVMYDGRI 508 (539)
T ss_pred c-------CHHHHHHHHHHHHHHHHHhCCEEEEEeCC----------------H---HHHHhhCceEEEEECCeE
Confidence 2 22234688999999999999999999982 2 257889999999987643
No 289
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.36 E-value=0.0014 Score=58.20 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=25.3
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
-+.+|+++.|.|++|+|||||+.-++-..
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 57899999999999999999998766543
No 290
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.36 E-value=0.0023 Score=63.08 Aligned_cols=44 Identities=23% Similarity=0.277 Sum_probs=38.1
Q ss_pred cccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHh
Q psy2891 197 ISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE 241 (452)
Q Consensus 197 i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~ 241 (452)
.+++...+|-+. .+-+|+=.+|.|+||+|||+++.+++.+...+
T Consensus 153 ~~~~~rvID~l~-PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n 196 (416)
T PRK09376 153 EDLSTRIIDLIA-PIGKGQRGLIVAPPKAGKTVLLQNIANSITTN 196 (416)
T ss_pred cccceeeeeeec-ccccCceEEEeCCCCCChhHHHHHHHHHHHhh
Confidence 678888888763 57889999999999999999999999888753
No 291
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.36 E-value=0.0023 Score=58.22 Aligned_cols=36 Identities=22% Similarity=0.542 Sum_probs=29.4
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++--.
T Consensus 22 il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 22 ILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred eeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 455554458999999999999999999998877654
No 292
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.35 E-value=0.0011 Score=63.61 Aligned_cols=161 Identities=14% Similarity=0.151 Sum_probs=79.7
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCC--CcEEEEeCCC----CHHHHHHHHHHHhCCC-------
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENK--LPVAIFSMEM----SGIQLAMRMLGSVGKL------- 269 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g--~~vl~~s~E~----~~~~i~~R~~a~~~~i------- 269 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-......| ..| ++..+. +..... +.++....-
T Consensus 22 ~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i-~i~g~~~~~~~~~~~~-~~ig~v~q~~~~~~~~ 99 (282)
T PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKI-TVDGITLTAKTVWDIR-EKVGIVFQNPDNQFVG 99 (282)
T ss_pred ceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEE-EECCEECCcCCHHHHH-hheEEEEECHHHhhcc
Confidence 46666456899999999999999999999988765421121 223 333221 111111 111110000
Q ss_pred -Ccc-ccc----cCCCCcchH-HHHHHHHHHHhCCCeEEEc-CCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCC
Q psy2891 270 -DQH-KLR----TGRLSSDDW-PRINDSIKKINKSQLYIDE-TPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANS 341 (452)
Q Consensus 270 -~~~-~i~----~g~l~~~~~-~~~~~a~~~l~~~~l~i~~-~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~ 341 (452)
+.. .+. ...++.+++ +++.++++.+.-.+ +... ...+|-.+.+...-...--. +|+++++|.-..
T Consensus 100 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LS~G~~qrv~laral~~-~P~llllDEPt~----- 172 (282)
T PRK13640 100 ATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLD-YIDSEPANLSGGQKQRVAIAGILAV-EPKIIILDESTS----- 172 (282)
T ss_pred CCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChh-HhcCCcccCCHHHHHHHHHHHHHHc-CCCEEEEECCcc-----
Confidence 000 000 001222222 12333333321111 1111 23455555443322211223 499999998532
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecC
Q psy2891 342 RGENRATEISEISRNLKGLAKEINCPILALSQL 374 (452)
Q Consensus 342 ~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql 374 (452)
+-+. .....+...|+.++++.+.+||+++|-
T Consensus 173 -gLD~-~~~~~l~~~l~~l~~~~g~tvli~tH~ 203 (282)
T PRK13640 173 -MLDP-AGKEQILKLIRKLKKKNNLTVISITHD 203 (282)
T ss_pred -cCCH-HHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 1222 234567788888888789999998874
No 293
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.34 E-value=0.0043 Score=66.43 Aligned_cols=37 Identities=19% Similarity=0.379 Sum_probs=31.4
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
+.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 30 ~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll 66 (623)
T PRK10261 30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLL 66 (623)
T ss_pred eEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 4677775568999999999999999999999888654
No 294
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.33 E-value=0.0044 Score=58.51 Aligned_cols=35 Identities=14% Similarity=0.309 Sum_probs=28.4
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+. -+.+|+++.|.|++|+|||||+.-++--.
T Consensus 16 ~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~ 50 (255)
T cd03236 16 KLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKL 50 (255)
T ss_pred hhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 455554 28899999999999999999997777654
No 295
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.33 E-value=0.0015 Score=59.25 Aligned_cols=39 Identities=21% Similarity=0.213 Sum_probs=29.1
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGI 256 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~ 256 (452)
+++|+|++|+||||++..++..... ....-+++.|.+.+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~--~~~~~i~t~e~~~E 41 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK--NKTHHILTIEDPIE 41 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh--cCCcEEEEEcCCcc
Confidence 8999999999999999888777642 22334556777653
No 296
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.32 E-value=0.0022 Score=63.88 Aligned_cols=51 Identities=12% Similarity=0.230 Sum_probs=36.5
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhC-C----CcEEEEeCCC--CHHHHHHHHHHHh
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIEN-K----LPVAIFSMEM--SGIQLAMRMLGSV 266 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~-g----~~vl~~s~E~--~~~~i~~R~~a~~ 266 (452)
.++|.|+||+|||+++..++.++.... + .+++|+++.. +...+..++...+
T Consensus 42 ~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l 99 (365)
T TIGR02928 42 NVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQL 99 (365)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999998888764221 1 4678887643 4456777766544
No 297
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.32 E-value=0.0016 Score=60.83 Aligned_cols=35 Identities=17% Similarity=0.379 Sum_probs=29.0
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++--
T Consensus 20 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (237)
T PRK11614 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGD 54 (237)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 45665456899999999999999999999877654
No 298
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.32 E-value=0.0012 Score=63.29 Aligned_cols=36 Identities=17% Similarity=0.350 Sum_probs=30.0
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 22 ~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 57 (277)
T PRK13642 22 QLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLF 57 (277)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 566664468999999999999999999999777544
No 299
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.32 E-value=0.0016 Score=59.08 Aligned_cols=28 Identities=25% Similarity=0.500 Sum_probs=24.9
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
+..|++++|.|++|+|||||+..++...
T Consensus 22 l~~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 22 MEKKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred EcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 4567999999999999999999998765
No 300
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.31 E-value=0.0012 Score=63.56 Aligned_cols=36 Identities=17% Similarity=0.293 Sum_probs=30.2
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 21 ~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~ 56 (288)
T PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLL 56 (288)
T ss_pred ceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 566665568999999999999999999998887543
No 301
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.31 E-value=0.00064 Score=59.60 Aligned_cols=36 Identities=17% Similarity=0.324 Sum_probs=29.2
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+.+.|.|++|+|||||+.-++-..
T Consensus 15 vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 15 ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455554458999999999999999999998776543
No 302
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.30 E-value=0.0033 Score=54.97 Aligned_cols=31 Identities=26% Similarity=0.376 Sum_probs=25.8
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHh
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE 241 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~ 241 (452)
+..+.+++|.|+.|+|||+++..+++.....
T Consensus 18 ~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~ 48 (162)
T cd03227 18 FGEGSLTIITGPNGSGKSTILDAIGLALGGA 48 (162)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3445799999999999999999988877653
No 303
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.30 E-value=0.0027 Score=66.16 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=29.8
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
..|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~ 54 (501)
T PRK10762 18 KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIY 54 (501)
T ss_pred EEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3466664458999999999999999999998777543
No 304
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.30 E-value=0.0041 Score=54.75 Aligned_cols=163 Identities=12% Similarity=0.121 Sum_probs=90.0
Q ss_pred ccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHH-----HHHHHHHHHhCCCC
Q psy2891 196 GISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGI-----QLAMRMLGSVGKLD 270 (452)
Q Consensus 196 ~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~-----~i~~R~~a~~~~i~ 270 (452)
.++.|-+.|+.+.--+++|+++.+.|++|+|||||+.-+....-- ....+.+...+.+.- -...|- .|+-
T Consensus 10 ~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~p-t~G~i~~~~~dl~~l~~~~iP~LRR~----IGvV 84 (223)
T COG2884 10 AYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERP-TRGKILVNGHDLSRLKGREIPFLRRQ----IGVV 84 (223)
T ss_pred hcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcC-CCceEEECCeecccccccccchhhhe----eeeE
Confidence 356676689998667999999999999999999998877665422 223455554443321 122222 2221
Q ss_pred cccc-----------------ccCCCCcchH-HHHHHHHHHHhCC-CeEEEcCCCCCH-HHHHHHHHHHHHHcCCccEEE
Q psy2891 271 QHKL-----------------RTGRLSSDDW-PRINDSIKKINKS-QLYIDETPSLNV-IELRANSRRLSRQCGKIGVII 330 (452)
Q Consensus 271 ~~~i-----------------~~g~l~~~~~-~~~~~a~~~l~~~-~l~i~~~~~~t~-~~i~~~i~~~~~~~~~~~~vv 330 (452)
+... ..| .++.++ +++.++.++..-. +.... .+.+|- ++-+-.|.+..- + +|.+++
T Consensus 85 FQD~rLL~~~tvyeNVA~pL~v~G-~~~~~i~~rV~~~L~~VgL~~k~~~l-P~~LSGGEQQRvaIARAiV-~-~P~vLl 160 (223)
T COG2884 85 FQDFRLLPDRTVYENVALPLRVIG-KPPREIRRRVSEVLDLVGLKHKARAL-PSQLSGGEQQRVAIARAIV-N-QPAVLL 160 (223)
T ss_pred eeeccccccchHhhhhhhhhhccC-CCHHHHHHHHHHHHHHhccchhhhcC-ccccCchHHHHHHHHHHHc-c-CCCeEe
Confidence 1111 012 233333 3566666654211 11111 122332 333333333322 2 589999
Q ss_pred EcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCC
Q psy2891 331 IDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLN 375 (452)
Q Consensus 331 ID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~ 375 (452)
-|.-+- .-.+.-..++-.+...+-.+ |.+|++.+|-.
T Consensus 161 ADEPTG----NLDp~~s~~im~lfeeinr~----GtTVl~ATHd~ 197 (223)
T COG2884 161 ADEPTG----NLDPDLSWEIMRLFEEINRL----GTTVLMATHDL 197 (223)
T ss_pred ecCCCC----CCChHHHHHHHHHHHHHhhc----CcEEEEEeccH
Confidence 987431 11123344566888888887 77888888743
No 305
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.30 E-value=0.0021 Score=65.98 Aligned_cols=38 Identities=26% Similarity=0.359 Sum_probs=31.8
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHhC-CCcEEEEeCC
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIEN-KLPVAIFSME 252 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~~-g~~vl~~s~E 252 (452)
.-++|.|+||+|||.++..++..+.... +.+|+|++.+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~ 187 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE 187 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 4589999999999999999998886432 6789999876
No 306
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.30 E-value=0.0017 Score=67.75 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=29.1
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-.
T Consensus 26 il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl 60 (510)
T PRK15439 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGI 60 (510)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45666446899999999999999999999877654
No 307
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.29 E-value=0.0018 Score=55.43 Aligned_cols=36 Identities=31% Similarity=0.462 Sum_probs=28.7
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+.+.|.|++|+|||||+.-++-..
T Consensus 15 ~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 15 LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 455554458999999999999999999998776543
No 308
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.29 E-value=0.008 Score=63.01 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=30.2
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 15 ~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 456654468999999999999999999999888753
No 309
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.29 E-value=0.0061 Score=54.06 Aligned_cols=32 Identities=19% Similarity=0.325 Sum_probs=26.5
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNI 234 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~i 234 (452)
.|+.+.--+++|+++.|.|++|+|||||+.-+
T Consensus 10 ~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~i 41 (176)
T cd03238 10 NLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 35555445899999999999999999999755
No 310
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.29 E-value=0.0033 Score=64.65 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=29.9
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.-.+.+|+++.|.|++|+|||||+.-++-..
T Consensus 39 IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl 74 (549)
T PRK13545 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVT 74 (549)
T ss_pred EEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 466665568999999999999999999998877543
No 311
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.28 E-value=0.0029 Score=56.30 Aligned_cols=33 Identities=30% Similarity=0.546 Sum_probs=27.4
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEE
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIF 249 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~ 249 (452)
|++++|+||+|||+|+.+++..+- +.++.|...
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~-~~i~~vi~l 35 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELR-QEIWRVIHL 35 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH-Hhhhhcccc
Confidence 789999999999999999998875 456666543
No 312
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.28 E-value=0.0099 Score=55.81 Aligned_cols=35 Identities=14% Similarity=0.296 Sum_probs=28.5
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++--
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (247)
T TIGR00972 16 ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRM 50 (247)
T ss_pred eecceeEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 35555445899999999999999999999877654
No 313
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.27 E-value=0.014 Score=55.27 Aligned_cols=36 Identities=14% Similarity=0.259 Sum_probs=29.4
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++--.
T Consensus 22 il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 57 (261)
T PRK14258 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMN 57 (261)
T ss_pred EeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 355554458999999999999999999998887654
No 314
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.27 E-value=0.0059 Score=57.12 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=29.1
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+.+.|.|++|+|||||+.-++-..
T Consensus 17 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred eEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455554458899999999999999999998877543
No 315
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.26 E-value=0.0021 Score=62.89 Aligned_cols=37 Identities=16% Similarity=0.369 Sum_probs=30.8
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
+.|+.+.--+.+|+++.|.|++|+|||||+.-++--.
T Consensus 40 ~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~ 76 (320)
T PRK13631 40 VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLI 76 (320)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567765568999999999999999999998877543
No 316
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.26 E-value=0.003 Score=58.87 Aligned_cols=130 Identities=18% Similarity=0.210 Sum_probs=78.0
Q ss_pred ccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC----CCHHHHHHHHHHHh--CCCCcccc
Q psy2891 201 FFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME----MSGIQLAMRMLGSV--GKLDQHKL 274 (452)
Q Consensus 201 ~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E----~~~~~i~~R~~a~~--~~i~~~~i 274 (452)
...+|.+.-.+.+|+...|.|.+|+||||++.-++.-.- -... -++|... ++..+..+|+...+ .|.+...+
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~-pt~G-~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~ 103 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE-PTSG-EILFEGKDITKLSKEERRERVLELLEKVGLPEEFL 103 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC-CCCc-eEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHh
Confidence 467787755689999999999999999999987765431 1222 3444432 22333333332222 33443322
Q ss_pred c--cCCCCcchHHHHHHHHHHHhCCCeEEEcCCC--CCH---HHHHHHHHHHHHHcCCccEEEEcC
Q psy2891 275 R--TGRLSSDDWPRINDSIKKINKSQLYIDETPS--LNV---IELRANSRRLSRQCGKIGVIIIDY 333 (452)
Q Consensus 275 ~--~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~--~t~---~~i~~~i~~~~~~~~~~~~vvID~ 333 (452)
. ...++-.+.+|+.-|..-.-+..+.+.|.+. +.+ .+|.+.+..+..+.+ ...+||=+
T Consensus 104 ~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~-lt~lFIsH 168 (268)
T COG4608 104 YRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELG-LTYLFISH 168 (268)
T ss_pred hcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhC-CeEEEEEE
Confidence 2 1346666777776655544455667766542 222 567777777777776 77766644
No 317
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.26 E-value=0.003 Score=61.39 Aligned_cols=128 Identities=16% Similarity=0.308 Sum_probs=73.1
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCC----------------CcEEE------------------
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENK----------------LPVAI------------------ 248 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g----------------~~vl~------------------ 248 (452)
.|+.+.--+..|++++|.||+|+||||++.-||--.....| ..+.+
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Nia 97 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIA 97 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhh
Confidence 45555445899999999999999999999988742211000 11111
Q ss_pred EeCCC---CHHHHHHHHHHHhCCCCccccc---cCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCH-----HHHHHHHH
Q psy2891 249 FSMEM---SGIQLAMRMLGSVGKLDQHKLR---TGRLSSDDWPRINDSIKKINKSQLYIDETPSLNV-----IELRANSR 317 (452)
Q Consensus 249 ~s~E~---~~~~i~~R~~a~~~~i~~~~i~---~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~-----~~i~~~i~ 317 (452)
|.+.+ +..++..|.....--+.+..+. ...+|-.+.+|+.-+..-+++..+++.|.|-.++ .+++..++
T Consensus 98 f~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~ 177 (338)
T COG3839 98 FGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIK 177 (338)
T ss_pred hhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHH
Confidence 12222 2334444432221112222222 2356767777776666666777788888764444 34566666
Q ss_pred HHHHHcCCccEEEE
Q psy2891 318 RLSRQCGKIGVIII 331 (452)
Q Consensus 318 ~~~~~~~~~~~vvI 331 (452)
++.++.+ ..+|.|
T Consensus 178 ~lh~~l~-~T~IYV 190 (338)
T COG3839 178 KLHERLG-TTTIYV 190 (338)
T ss_pred HHHHhcC-CcEEEE
Confidence 7766665 665555
No 318
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.26 E-value=0.0059 Score=56.23 Aligned_cols=172 Identities=15% Similarity=0.132 Sum_probs=87.4
Q ss_pred ccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCC-------------CcEEEEeCCC---CHHHHHHHHHH
Q psy2891 201 FFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENK-------------LPVAIFSMEM---SGIQLAMRMLG 264 (452)
Q Consensus 201 ~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g-------------~~vl~~s~E~---~~~~i~~R~~a 264 (452)
...|+.+.--+.+|+++.|.|++|+||||++.=+|--..-..| ..+.|+--+. +...+.+...
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~- 94 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVA- 94 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhhe-
Confidence 5566666556899999999999999999998766642211111 1222322221 2222222211
Q ss_pred HhCCCCccccccCCCCcc-hHHHHHHHHHHHhCCCeEEEcCCCCC--HHHHHHHHHHHHHHcCCccEEEEcCcchhccCC
Q psy2891 265 SVGKLDQHKLRTGRLSSD-DWPRINDSIKKINKSQLYIDETPSLN--VIELRANSRRLSRQCGKIGVIIIDYLQLMSANS 341 (452)
Q Consensus 265 ~~~~i~~~~i~~g~l~~~-~~~~~~~a~~~l~~~~l~i~~~~~~t--~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~ 341 (452)
.++... | .+.. ..++..+..+...-..+.=.....+| ..+=.+.++.+.. +|+++..|-- -
T Consensus 95 --l~l~~~----~-~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~---~P~lLLlDEP------F 158 (248)
T COG1116 95 --LGLELR----G-KSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALAT---RPKLLLLDEP------F 158 (248)
T ss_pred --ehhhcc----c-cchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhc---CCCEEEEcCC------c
Confidence 122111 1 2222 22233333333211111111112233 2233344444432 4999999962 1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEec
Q psy2891 342 RGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYR 409 (452)
Q Consensus 342 ~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r 409 (452)
+.-+..--..+-..|.++.++.+.+|+++.|-=.++ -..||.|+.|..
T Consensus 159 -gALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EA-------------------v~LsdRivvl~~ 206 (248)
T COG1116 159 -GALDALTREELQDELLRLWEETRKTVLLVTHDVDEA-------------------VYLADRVVVLSN 206 (248)
T ss_pred -chhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHH-------------------HhhhCEEEEecC
Confidence 011112223555678889999999999999843322 346888888753
No 319
>KOG0734|consensus
Probab=97.26 E-value=0.0022 Score=64.52 Aligned_cols=30 Identities=23% Similarity=0.548 Sum_probs=24.8
Q ss_pred cccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 206 KITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 206 ~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
+++|.+++| +++.||||.|||.+|..+|-.
T Consensus 331 rLGGKLPKG--VLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 331 RLGGKLPKG--VLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred hccCcCCCc--eEEeCCCCCchhHHHHHhhcc
Confidence 346779999 899999999999998877653
No 320
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.26 E-value=0.0039 Score=52.98 Aligned_cols=22 Identities=32% Similarity=0.681 Sum_probs=19.7
Q ss_pred EEEEEeCCCCChhHHHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
|++++|+||+|||||+.+++..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988754
No 321
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.25 E-value=0.0062 Score=55.86 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=29.2
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.-.+.+|+.+.|.|++|+|||||+.-++-..
T Consensus 26 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 345554458999999999999999999998887643
No 322
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=97.24 E-value=0.0031 Score=67.43 Aligned_cols=37 Identities=24% Similarity=0.406 Sum_probs=31.6
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.-|+.+.+-+++|+++.|.|++|+|||||+.-++-..
T Consensus 39 ~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~ 75 (617)
T TIGR00955 39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRS 75 (617)
T ss_pred ccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3577777779999999999999999999998887643
No 323
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=97.24 E-value=0.0048 Score=60.62 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=30.0
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
..|+.+.--+.+|+++.|.|++|+|||||+.-++--
T Consensus 21 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl 56 (330)
T PRK15093 21 KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGV 56 (330)
T ss_pred EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 356666446899999999999999999999887754
No 324
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.24 E-value=0.002 Score=63.68 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=31.3
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHH
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGI 256 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~ 256 (452)
.++.+++|+|++|+||||++..++..... ....-+++.|.+.+
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~--~~~~~i~tiEdp~E 162 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYINK--NAAGHIITIEDPIE 162 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhCc--CCCCEEEEEcCChh
Confidence 46779999999999999999888766532 22233456777755
No 325
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.24 E-value=0.0024 Score=58.30 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=28.8
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-.
T Consensus 17 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45665445889999999999999999998877654
No 326
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.23 E-value=0.0034 Score=55.51 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=29.1
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 15 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 15 ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 355554458999999999999999999998776643
No 327
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.22 E-value=0.0044 Score=54.44 Aligned_cols=36 Identities=19% Similarity=0.436 Sum_probs=29.5
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 16 ~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred eeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455554458999999999999999999998877654
No 328
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.21 E-value=0.0028 Score=60.48 Aligned_cols=184 Identities=15% Similarity=0.150 Sum_probs=97.7
Q ss_pred ccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHH----hCCCcEEEEeC---CCCHHHHH---HHHHHHhCCCC
Q psy2891 201 FFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAI----ENKLPVAIFSM---EMSGIQLA---MRMLGSVGKLD 270 (452)
Q Consensus 201 ~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~----~~g~~vl~~s~---E~~~~~i~---~R~~a~~~~i~ 270 (452)
+..+|.+.-.+.+|+...|.|.+|+|||+++..++.-.-. ..+..+.|-.- .++.+++. -+-++....-+
T Consensus 18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p 97 (316)
T COG0444 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP 97 (316)
T ss_pred EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCc
Confidence 4567777556899999999999999999999988874421 01223443222 34444211 11111111111
Q ss_pred ccc------c--------c-cCCC-Cc-chHHHHHHHHHHHhCC-C--eEEEcCCCCCHHHHHHHHHHHHHHcCCccEEE
Q psy2891 271 QHK------L--------R-TGRL-SS-DDWPRINDSIKKINKS-Q--LYIDETPSLNVIELRANSRRLSRQCGKIGVII 330 (452)
Q Consensus 271 ~~~------i--------~-~g~l-~~-~~~~~~~~a~~~l~~~-~--l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vv 330 (452)
... + + .+.. +. +..++..+..+.+.=. + ..-.....+|=......+-.+.-.. +|+++|
T Consensus 98 ~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~-~P~LlI 176 (316)
T COG0444 98 MTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALAL-NPKLLI 176 (316)
T ss_pred hhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhC-CCCEEE
Confidence 000 0 0 0011 01 1112222222222100 0 1111112333222333333333334 499999
Q ss_pred EcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecC
Q psy2891 331 IDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRD 410 (452)
Q Consensus 331 ID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~ 410 (452)
-|--+. .-+.....++++-|+.+.+++|.++|+++| |+ +-+.+.||.|..+|--
T Consensus 177 ADEPTT-------ALDvt~QaqIl~Ll~~l~~e~~~aiilITH----------------Dl---~vva~~aDri~VMYaG 230 (316)
T COG0444 177 ADEPTT-------ALDVTVQAQILDLLKELQREKGTALILITH----------------DL---GVVAEIADRVAVMYAG 230 (316)
T ss_pred eCCCcc-------hhhHHHHHHHHHHHHHHHHhcCCEEEEEeC----------------CH---HHHHHhcceEEEEECc
Confidence 998542 122233468899999999999999999997 22 3577889999999865
Q ss_pred c
Q psy2891 411 E 411 (452)
Q Consensus 411 ~ 411 (452)
+
T Consensus 231 ~ 231 (316)
T COG0444 231 R 231 (316)
T ss_pred E
Confidence 4
No 329
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.21 E-value=0.0068 Score=54.42 Aligned_cols=158 Identities=16% Similarity=0.189 Sum_probs=81.2
Q ss_pred CccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCC----CcEEEE-----eCCCCHHHHHHHHHHHhCCCC
Q psy2891 200 GFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENK----LPVAIF-----SMEMSGIQLAMRMLGSVGKLD 270 (452)
Q Consensus 200 g~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g----~~vl~~-----s~E~~~~~i~~R~~a~~~~i~ 270 (452)
....|..+...++++.++.+.||+|+|||||+..+=.-.-.-.+ ..|+|. +...+..++..|. .+...-+
T Consensus 19 ~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~v-GMVFQkP 97 (253)
T COG1117 19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRV-GMVFQKP 97 (253)
T ss_pred chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHh-eeeccCC
Confidence 34556666667999999999999999999998765443221111 234443 3445566666654 1221111
Q ss_pred c---cccc---------cCCCCcchHHH-HHHHHHHHhCCCeE------EEcC-CCCCHHHHHH--HHHHHHHHcCCccE
Q psy2891 271 Q---HKLR---------TGRLSSDDWPR-INDSIKKINKSQLY------IDET-PSLNVIELRA--NSRRLSRQCGKIGV 328 (452)
Q Consensus 271 ~---~~i~---------~g~l~~~~~~~-~~~a~~~l~~~~l~------i~~~-~~~t~~~i~~--~i~~~~~~~~~~~~ 328 (452)
. ..|. .|..+ .+++. +..+ |+...+| +.++ .++|=.+-.. .+|.+. . +|++
T Consensus 98 nPFp~SIydNVayG~r~~g~~~-~~ldeiVe~s---Lk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalA--v-~PeV 170 (253)
T COG1117 98 NPFPMSIYDNVAYGLRLHGIKD-KELDEIVESS---LKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALA--V-KPEV 170 (253)
T ss_pred CCCCchHHHHHHHhHHhhccch-HHHHHHHHHH---HHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHh--c-CCcE
Confidence 0 0111 12222 22221 1222 1111222 1111 1334333322 222222 2 5999
Q ss_pred EEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecC
Q psy2891 329 IIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQL 374 (452)
Q Consensus 329 vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql 374 (452)
+..|--..--.+ -....+.+++..|| .+.+||++.|-
T Consensus 171 lLmDEPtSALDP----IsT~kIEeLi~eLk-----~~yTIviVTHn 207 (253)
T COG1117 171 LLMDEPTSALDP----ISTLKIEELITELK-----KKYTIVIVTHN 207 (253)
T ss_pred EEecCcccccCc----hhHHHHHHHHHHHH-----hccEEEEEeCC
Confidence 999986543332 24456778888887 46677777763
No 330
>PRK06762 hypothetical protein; Provisional
Probab=97.21 E-value=0.006 Score=53.42 Aligned_cols=33 Identities=27% Similarity=0.417 Sum_probs=27.0
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
.+++|+|.||+||||++..++... +..+.+++.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l----~~~~~~i~~ 35 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL----GRGTLLVSQ 35 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh----CCCeEEecH
Confidence 489999999999999999998765 335777753
No 331
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.21 E-value=0.0041 Score=56.60 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=28.8
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-.
T Consensus 16 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45555446899999999999999999999877654
No 332
>PRK13409 putative ATPase RIL; Provisional
Probab=97.20 E-value=0.0051 Score=65.17 Aligned_cols=164 Identities=15% Similarity=0.163 Sum_probs=86.5
Q ss_pred cccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCC-----CcEEEEeCC------CCHHHHHHHHHHHhCCCCcc
Q psy2891 204 LDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENK-----LPVAIFSME------MSGIQLAMRMLGSVGKLDQH 272 (452)
Q Consensus 204 LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g-----~~vl~~s~E------~~~~~i~~R~~a~~~~i~~~ 272 (452)
|+.+..-+.+|+++.|.|++|+|||||+.-++-..--..| .++.|+.-+ ++..+...... .
T Consensus 355 l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~---~----- 426 (590)
T PRK13409 355 LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSIT---D----- 426 (590)
T ss_pred EEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHh---h-----
Confidence 4433345789999999999999999999888754321122 123333222 22222211100 0
Q ss_pred ccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHH
Q psy2891 273 KLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISE 352 (452)
Q Consensus 273 ~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~ 352 (452)
..... + ...++++.+.-..+.-.....+|-.+.....-...-.. +++++++|--.. +-+ ......
T Consensus 427 -----~~~~~-~-~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~-~p~llLLDEPt~------~LD-~~~~~~ 491 (590)
T PRK13409 427 -----DLGSS-Y-YKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSR-DADLYLLDEPSA------HLD-VEQRLA 491 (590)
T ss_pred -----hcChH-H-HHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhc-CCCEEEEeCCcc------CCC-HHHHHH
Confidence 00001 1 11222222210011001123456555544322222223 499999998532 122 223457
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEec
Q psy2891 353 ISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYR 409 (452)
Q Consensus 353 i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r 409 (452)
+.+.|+.++++.+.+||+++|--. .+.+.||.++.+..
T Consensus 492 l~~~l~~l~~~~g~tviivsHD~~-------------------~~~~~aDrvivl~~ 529 (590)
T PRK13409 492 VAKAIRRIAEEREATALVVDHDIY-------------------MIDYISDRLMVFEG 529 (590)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHH-------------------HHHHhCCEEEEEcC
Confidence 788899999888999999988321 24556788877754
No 333
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.19 E-value=0.0065 Score=55.98 Aligned_cols=61 Identities=16% Similarity=0.296 Sum_probs=40.5
Q ss_pred CccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC----CCHHHHHHHH
Q psy2891 200 GFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME----MSGIQLAMRM 262 (452)
Q Consensus 200 g~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E----~~~~~i~~R~ 262 (452)
+...+|++.--+.+|+++++.|++|+||||.+.-|-. +. +....-++|..| ++..++..++
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINr-Li-ept~G~I~i~g~~i~~~d~~~LRr~I 77 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINR-LI-EPTSGEILIDGEDISDLDPVELRRKI 77 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhc-cc-CCCCceEEECCeecccCCHHHHHHhh
Confidence 5567788766799999999999999999998764433 32 232334455444 3445555554
No 334
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.19 E-value=0.0021 Score=58.36 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=28.9
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+.+.|.|++|+|||||+.-++-.
T Consensus 15 ~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred eeeccceEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45555445899999999999999999999887764
No 335
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.18 E-value=0.0064 Score=52.70 Aligned_cols=143 Identities=15% Similarity=0.187 Sum_probs=80.3
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEE---EeC--CCCHHHHHHHHHHHhCCCCccccccCC-CCcchHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAI---FSM--EMSGIQLAMRMLGSVGKLDQHKLRTGR-LSSDDWPRIND 289 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~---~s~--E~~~~~i~~R~~a~~~~i~~~~i~~g~-l~~~~~~~~~~ 289 (452)
++.|...+|.|||+.|+.++..++ .+|.+|+| +.. +........++ .++.......+. +..++...-.+
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~-~~g~~v~~vQFlKg~~~~gE~~~l~~l----~~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRAL-GHGYRVGVVQFLKGGWKYGELKALERL----PNIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEEEeCCCCccCHHHHHHhC----CCcEEEECCCCCccCCCChHHHHH
Confidence 778888889999999999999998 57999999 444 34444444443 344443332221 11111100000
Q ss_pred HHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEE
Q psy2891 290 SIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPIL 369 (452)
Q Consensus 290 a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi 369 (452)
+ ..+..+.+++.... +.+|+||+|-+.....-+ .-. ...+...|+. +--++.||
T Consensus 79 ~------------------a~~~~~~a~~~~~~-~~~dLlVLDEi~~a~~~g--li~---~~~v~~ll~~--rp~~~evI 132 (159)
T cd00561 79 A------------------AAEGWAFAKEAIAS-GEYDLVILDEINYALGYG--LLD---VEEVVDLLKA--KPEDLELV 132 (159)
T ss_pred H------------------HHHHHHHHHHHHhc-CCCCEEEEechHhHhhCC--CCC---HHHHHHHHHc--CCCCCEEE
Confidence 0 11222333344443 359999999998764332 111 2344455553 34467888
Q ss_pred EEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEE
Q psy2891 370 ALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFI 407 (452)
Q Consensus 370 ~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l 407 (452)
++..-. +..+-..||.|--+
T Consensus 133 lTGr~~------------------p~~l~e~AD~VTEm 152 (159)
T cd00561 133 LTGRNA------------------PKELIEAADLVTEM 152 (159)
T ss_pred EECCCC------------------CHHHHHhCceeeec
Confidence 875321 23566778887655
No 336
>KOG0733|consensus
Probab=97.18 E-value=0.0013 Score=67.15 Aligned_cols=116 Identities=16% Similarity=0.344 Sum_probs=67.5
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHH
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRIND 289 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~ 289 (452)
|+.|-.=+++-||||+|||.||..+|.++ |.| |++.- ..++ + +|++..
T Consensus 219 Gv~PprGvLlHGPPGCGKT~lA~AiAgel----~vP--f~~is--Apei----v---SGvSGE----------------- 266 (802)
T KOG0733|consen 219 GVRPPRGVLLHGPPGCGKTSLANAIAGEL----GVP--FLSIS--APEI----V---SGVSGE----------------- 266 (802)
T ss_pred CCCCCCceeeeCCCCccHHHHHHHHhhhc----CCc--eEeec--chhh----h---cccCcc-----------------
Confidence 67666669999999999999998888654 333 33332 2222 2 222211
Q ss_pred HHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCC---HHHHHHHHHHHHHHHHH--Hh
Q psy2891 290 SIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGEN---RATEISEISRNLKGLAK--EI 364 (452)
Q Consensus 290 a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~---~~~~~~~i~~~Lk~lA~--~~ 364 (452)
+-..|++..+..+. + -|.+||||.|..+.+...... ++..+.+++..+..+.. ..
T Consensus 267 ------------------SEkkiRelF~~A~~-~-aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~ 326 (802)
T KOG0733|consen 267 ------------------SEKKIRELFDQAKS-N-APCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTK 326 (802)
T ss_pred ------------------cHHHHHHHHHHHhc-c-CCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccC
Confidence 11223333323222 2 489999999999987642111 12223444444444433 24
Q ss_pred CCcEEEEecCCcc
Q psy2891 365 NCPILALSQLNRS 377 (452)
Q Consensus 365 ~i~vi~l~ql~r~ 377 (452)
|-+|+++.-.||-
T Consensus 327 g~~VlVIgATnRP 339 (802)
T KOG0733|consen 327 GDPVLVIGATNRP 339 (802)
T ss_pred CCCeEEEecCCCC
Confidence 7899999988874
No 337
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=97.18 E-value=0.0054 Score=57.66 Aligned_cols=35 Identities=14% Similarity=0.405 Sum_probs=28.4
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++--
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl 45 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGL 45 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 35555445899999999999999999999877653
No 338
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=97.18 E-value=0.0012 Score=58.28 Aligned_cols=39 Identities=18% Similarity=0.451 Sum_probs=34.7
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSG 255 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~ 255 (452)
+.+..+-+|+|||+++.++|..++. .|++|+.+.++...
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~-~g~~vllvD~D~q~ 40 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAK-LGYKVGLLDADIYG 40 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHH-cCCcEEEEeCCCCC
Confidence 5678899999999999999999985 79999999998654
No 339
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.18 E-value=0.0032 Score=64.26 Aligned_cols=37 Identities=24% Similarity=0.371 Sum_probs=30.8
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHh-CCCcEEEEeCC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIE-NKLPVAIFSME 252 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~-~g~~vl~~s~E 252 (452)
-.+|.|+||+|||.|+..++..+... .+.+|+|++.+
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~ 169 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 48999999999999999999887543 25689999875
No 340
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.17 E-value=0.0071 Score=54.89 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=28.5
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+.+.|.|++|+|||||+.-++-..
T Consensus 15 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355554458899999999999999999987666543
No 341
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.17 E-value=0.0024 Score=55.49 Aligned_cols=36 Identities=22% Similarity=0.470 Sum_probs=28.7
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||+|+.-++...
T Consensus 14 ~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 14 ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344443358999999999999999999998876543
No 342
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.17 E-value=0.0016 Score=60.24 Aligned_cols=35 Identities=14% Similarity=0.240 Sum_probs=27.3
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
-++|.|++|+|||+|++.+..+.. ...+.+|+..+
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhc--ccCCEEEEEec
Confidence 478999999999999999998864 34556665544
No 343
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.17 E-value=0.0096 Score=63.78 Aligned_cols=180 Identities=14% Similarity=0.092 Sum_probs=89.5
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC---CCHHHHHH--HHHHHhCCCCcccccc-
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME---MSGIQLAM--RMLGSVGKLDQHKLRT- 276 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E---~~~~~i~~--R~~a~~~~i~~~~i~~- 276 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++--.- -....|.|..-+ ++..+... +-++....-+...+..
T Consensus 339 ~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~ 417 (623)
T PRK10261 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE-SQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPR 417 (623)
T ss_pred EEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-CCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCC
Confidence 4666644688999999999999999999987774331 112234332211 12221111 1111111100000000
Q ss_pred --------------CCCCc-chHHHHHHHHHHHhCCCeEEE-cCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccC
Q psy2891 277 --------------GRLSS-DDWPRINDSIKKINKSQLYID-ETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSAN 340 (452)
Q Consensus 277 --------------g~l~~-~~~~~~~~a~~~l~~~~l~i~-~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~ 340 (452)
+.... +...++.+..+.+.-.+-+.. ....+|-.+-...+-...-.. +++++|+|.-..-
T Consensus 418 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~-~p~llllDEPts~--- 493 (623)
T PRK10261 418 QTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALAL-NPKVIIADEAVSA--- 493 (623)
T ss_pred CCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhc-CCCEEEEeCCccc---
Confidence 10111 111222233332211000111 123556554443322222223 4999999985421
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecC
Q psy2891 341 SRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRD 410 (452)
Q Consensus 341 ~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~ 410 (452)
-+ ......+.+.|+.++++++.+||+++|--. .+.+.||.|++|+..
T Consensus 494 ---LD-~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-------------------~v~~~~dri~vl~~G 540 (623)
T PRK10261 494 ---LD-VSIRGQIINLLLDLQRDFGIAYLFISHDMA-------------------VVERISHRVAVMYLG 540 (623)
T ss_pred ---CC-HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-------------------HHHHhCCEEEEEECC
Confidence 12 223457778888888888999999998422 245567777777543
No 344
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.16 E-value=0.0026 Score=56.53 Aligned_cols=41 Identities=17% Similarity=0.232 Sum_probs=27.2
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS 254 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~ 254 (452)
.+..++|.|++|+|||+++..++..+....+. ++++.+...
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~-~~~~~~~~~ 63 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLDRLAERGGY-VISINCDDS 63 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHHHHHHHT---EEEEEEETT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE-EEEEEEecc
Confidence 44689999999999999999999988765334 666666555
No 345
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.16 E-value=0.0032 Score=63.23 Aligned_cols=29 Identities=28% Similarity=0.597 Sum_probs=24.5
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
|+.++.-+++.|+||+|||+++..+|...
T Consensus 175 Gl~~pkgvLL~GppGTGKT~LAkalA~~l 203 (398)
T PTZ00454 175 GIDPPRGVLLYGPPGTGKTMLAKAVAHHT 203 (398)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 57777779999999999999998887653
No 346
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.15 E-value=0.008 Score=55.90 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=29.5
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++--.
T Consensus 17 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 455554458999999999999999999998776554
No 347
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.14 E-value=0.0085 Score=54.75 Aligned_cols=34 Identities=26% Similarity=0.381 Sum_probs=27.6
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+| ++.|.|++|+|||||+.-++--
T Consensus 15 ~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 15 ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred EEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCC
Confidence 455554457889 9999999999999999887754
No 348
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.14 E-value=0.0034 Score=56.02 Aligned_cols=36 Identities=14% Similarity=0.249 Sum_probs=29.9
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+.+.|.|++|+|||||+.-++-..
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 566664568999999999999999999998777654
No 349
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.14 E-value=0.00048 Score=63.57 Aligned_cols=141 Identities=18% Similarity=0.216 Sum_probs=68.3
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC-CCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHH
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM-EMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSI 291 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~-E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~ 291 (452)
++..++|.|+.|+|||+++..++... .+.+..++|+.. +.........++. .. .....+.++.
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~~~~~~~-~~~~~~~~y~~~~~~~~~~~~~~~~~------~~---------~~~~~l~~~~ 82 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLKEFINEL-KEKGYKVVYIDFLEESNESSLRSFIE------ET---------SLADELSEAL 82 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHHHHHHHC-T--EECCCHHCCTTBSHHHHHHHHHH------HH---------HHHCHCHHHH
T ss_pred cCcEEEEEcCCcCCHHHHHHHHHHHh-hhcCCcEEEEecccchhhhHHHHHHH------HH---------HHHHHHHHHH
Confidence 35689999999999999998888766 334556777654 4444444444321 00 0000111111
Q ss_pred H-HHhCCCe-EEE-cCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcE
Q psy2891 292 K-KINKSQL-YID-ETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPI 368 (452)
Q Consensus 292 ~-~l~~~~l-~i~-~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~v 368 (452)
. .+....+ .+. +........+...++.+..... .-+||||.++.+.... ......+..+...+..++...++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~iiviDe~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~ 159 (234)
T PF01637_consen 83 GISIPSITLEKISKDLSEDSFSALERLLEKLKKKGK-KVIIVIDEFQYLAIAS--EEDKDFLKSLRSLLDSLLSQQNVSI 159 (234)
T ss_dssp HHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHC-CEEEEEETGGGGGBCT--TTTHHHHHHHHHHHHH----TTEEE
T ss_pred hhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCC-cEEEEEecHHHHhhcc--cchHHHHHHHHHHHhhccccCCceE
Confidence 1 1111111 111 1111223345555555554433 4899999999998211 1223334455555555555666666
Q ss_pred EEEe
Q psy2891 369 LALS 372 (452)
Q Consensus 369 i~l~ 372 (452)
|++.
T Consensus 160 v~~~ 163 (234)
T PF01637_consen 160 VITG 163 (234)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 6554
No 350
>PRK09183 transposase/IS protein; Provisional
Probab=97.14 E-value=0.00069 Score=64.09 Aligned_cols=40 Identities=18% Similarity=0.390 Sum_probs=35.1
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
+.+|+.++|.|+||+|||+++..++..+. ..|.+|+|++.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~-~~G~~v~~~~~ 138 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAV-RAGIKVRFTTA 138 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHH-HcCCeEEEEeH
Confidence 57789999999999999999999987765 47899999974
No 351
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.13 E-value=0.0086 Score=59.44 Aligned_cols=161 Identities=13% Similarity=0.137 Sum_probs=80.0
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC----CCHHHHH---HHHHHHhC---CCCc-
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME----MSGIQLA---MRMLGSVG---KLDQ- 271 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E----~~~~~i~---~R~~a~~~---~i~~- 271 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++--.-- ....| ++..+ ++..++. .|.++... ++-.
T Consensus 8 ~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p-~~G~I-~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 8 GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP-TAGQI-FIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC-CceEE-EECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 45666446899999999999999999999877765421 12223 33222 2333221 11111100 0000
Q ss_pred ccccc--------CCCCcch-HHHHHHHHHHHhCCCeEEEc-CCCCCHHHHHH--HHHHHHHHcCCccEEEEcCcchhcc
Q psy2891 272 HKLRT--------GRLSSDD-WPRINDSIKKINKSQLYIDE-TPSLNVIELRA--NSRRLSRQCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 272 ~~i~~--------g~l~~~~-~~~~~~a~~~l~~~~l~i~~-~~~~t~~~i~~--~i~~~~~~~~~~~~vvID~l~~i~~ 339 (452)
..+.+ ...+.++ .+++.++++.+. ..-+... ...+|-.+-.. .++.+. . +++++++|.-..-
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vg-L~~~~~~~p~~LSGGq~QRV~lARAL~--~-~p~iLLlDEP~sa-- 159 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVG-LEEYEHRYPDELSGGMQQRVGLARALA--A-EPDILLMDEAFSA-- 159 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC-CchhhhCChhhCCHHHHHHHHHHHHHh--c-CCCEEEEeCCccc--
Confidence 00000 0111111 122333333221 1112222 22455444333 333343 2 4999999985321
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCc
Q psy2891 340 NSRGENRATEISEISRNLKGLAKEINCPILALSQLNR 376 (452)
Q Consensus 340 ~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r 376 (452)
-+. .....+.+.|+.+.++.+.+||+++|--.
T Consensus 160 ----LD~-~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ 191 (363)
T TIGR01186 160 ----LDP-LIRDSMQDELKKLQATLQKTIVFITHDLD 191 (363)
T ss_pred ----CCH-HHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 121 22346677778887788999998887544
No 352
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.12 E-value=0.019 Score=54.33 Aligned_cols=36 Identities=14% Similarity=0.245 Sum_probs=29.8
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 28 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 28 ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred EeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 456654468999999999999999999999887543
No 353
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.12 E-value=0.0086 Score=54.44 Aligned_cols=36 Identities=19% Similarity=0.371 Sum_probs=29.6
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 20 il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred eeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 455554468999999999999999999998877644
No 354
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.12 E-value=0.0036 Score=65.41 Aligned_cols=36 Identities=17% Similarity=0.320 Sum_probs=29.5
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 20 il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 55 (510)
T PRK09700 20 ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIH 55 (510)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCc
Confidence 456664568999999999999999999998776543
No 355
>PF09807 DUF2348: Uncharacterized conserved protein (DUF2348); InterPro: IPR018627 Members of this family of putative uncharacterised proteins have no known function.
Probab=97.12 E-value=0.0072 Score=56.68 Aligned_cols=185 Identities=14% Similarity=0.173 Sum_probs=114.8
Q ss_pred CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccc-cCCCCcchHHHH
Q psy2891 209 SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLR-TGRLSSDDWPRI 287 (452)
Q Consensus 209 gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~-~g~l~~~~~~~~ 287 (452)
+..++|.+++|... ++.=|.+..++..... +.|.+|+|+++..+..-.. + .+...|++..... +|.+.--|. +
T Consensus 14 ~~~~~g~~ili~d~-~~dgsFLlh~~L~~~L-k~~~~V~fv~~~q~~~HY~-~-v~~KLG~NL~~~~~~gql~fiD~--l 87 (249)
T PF09807_consen 14 DSVPPGKLILIEDC-ETDGSFLLHHFLSQYL-KAGCKVCFVAFSQSFSHYN-N-VAQKLGVNLSAAKEKGQLVFIDG--L 87 (249)
T ss_pred CCCCCCeEEEEEcC-CCCchhHHHHHHHHHh-cCCCcEEEEEccCCHHHHH-H-HHHhhEecchHhccCCcEEEeeh--h
Confidence 45779999999999 8877777777777665 5889999999999865432 2 2233577776543 344432221 1
Q ss_pred HHHHHHHhC-----C--Ce-EEEcCCCCCHHHHHHHHHHHHHHc--CCccEEEEcCcchhccCCCCCCHHHHHHHHHHHH
Q psy2891 288 NDSIKKINK-----S--QL-YIDETPSLNVIELRANSRRLSRQC--GKIGVIIIDYLQLMSANSRGENRATEISEISRNL 357 (452)
Q Consensus 288 ~~a~~~l~~-----~--~l-~i~~~~~~t~~~i~~~i~~~~~~~--~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~L 357 (452)
......+.+ . ++ ++.....-.+..+.+.|+...... ++..+||||.+..+...+ -.. .++-.+++.+
T Consensus 88 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~L~~L~~~I~~~l~~~~~~~~~~liIDdls~Ll~lG--~s~-~~vldF~~yc 164 (249)
T PF09807_consen 88 KSSLDLLFDEDSSDEPNPLKFLREDNASSLRSLYEFIQEALSPADSNGSVVLIIDDLSVLLSLG--VSS-NDVLDFIHYC 164 (249)
T ss_pred hhhhhhhhccccccCCccccccccCCcchHHHHHHHHHHHHhhccCCCCeEEEEeCHHHHHHcC--CCH-HHHHHHHHHH
Confidence 111112111 1 12 222222234667766666655442 247899999999988743 222 3466788999
Q ss_pred H-HHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEec
Q psy2891 358 K-GLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYR 409 (452)
Q Consensus 358 k-~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r 409 (452)
+ .++.+.++.++++.|..-.... ..+ ..+ ...+.+.||.++.+..
T Consensus 165 ra~l~~~~~~~lVvl~h~d~~~~~---e~~--~~l--~~~L~h~a~l~i~v~~ 210 (249)
T PF09807_consen 165 RATLCSESNGSLVVLVHCDIDDED---EEN--DLL--LNSLAHMADLVITVEP 210 (249)
T ss_pred HHHhccccCCCEEEEEecCCCCcc---chH--HHH--HHHHHHHhcEEEEecC
Confidence 8 5888888888888887643211 111 012 4578999999998854
No 356
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.12 E-value=0.0021 Score=61.39 Aligned_cols=35 Identities=14% Similarity=0.202 Sum_probs=28.9
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-.
T Consensus 22 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 22 ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45655445889999999999999999999877654
No 357
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.12 E-value=0.01 Score=54.78 Aligned_cols=36 Identities=14% Similarity=0.337 Sum_probs=29.2
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 23 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred EEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455554458899999999999999999998776543
No 358
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.12 E-value=0.0036 Score=58.70 Aligned_cols=59 Identities=15% Similarity=0.242 Sum_probs=40.1
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhC-CCc-EEEEeCC--CCHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIEN-KLP-VAIFSME--MSGIQLAMRM 262 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~-g~~-vl~~s~E--~~~~~i~~R~ 262 (452)
.+|-++ .+.+|+-++|.|++|+|||+++..++.+...+. +.. +++++.| .+..++...+
T Consensus 6 ~id~~~-~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I 68 (249)
T cd01128 6 VVDLFA-PIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSV 68 (249)
T ss_pred heeeec-ccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHh
Confidence 345442 578999999999999999999988887764321 123 3344666 4555555554
No 359
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=97.11 E-value=0.012 Score=61.70 Aligned_cols=175 Identities=15% Similarity=0.127 Sum_probs=90.2
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC----CCHHHHH--HHHHHHhCCCC------
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME----MSGIQLA--MRMLGSVGKLD------ 270 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E----~~~~~i~--~R~~a~~~~i~------ 270 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++--. ...| .|. +..+ .+..+.. .+.++....-+
T Consensus 301 il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G-~i~-~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~ 377 (529)
T PRK15134 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQG-EIW-FDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNP 377 (529)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCc-EEE-ECCEEccccchhhHHHhhhceEEEEeCchhhcCC
Confidence 466664468999999999999999999998887543 2222 233 3221 1111111 11111110000
Q ss_pred ---ccc-cc-----cC-CCCcch-HHHHHHHHHHHhCCCeE---EE-cCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcc
Q psy2891 271 ---QHK-LR-----TG-RLSSDD-WPRINDSIKKINKSQLY---ID-ETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQ 335 (452)
Q Consensus 271 ---~~~-i~-----~g-~l~~~~-~~~~~~a~~~l~~~~l~---i~-~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~ 335 (452)
... +. .+ .++..+ ..++.+.++.+ .+. .. ....+|-.+-...+-...-.. +++++++|.-.
T Consensus 378 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~---~l~~~~~~~~~~~LSgG~~qrv~la~al~~-~p~llllDEPt 453 (529)
T PRK15134 378 RLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEV---GLDPETRHRYPAEFSGGQRQRIAIARALIL-KPSLIILDEPT 453 (529)
T ss_pred cccHHHHHHHHHHhccccCChHHHHHHHHHHHHHc---CCCHHHHhcCCccCCHHHHHHHHHHHHHhC-CCCEEEeeCCc
Confidence 000 00 00 011111 12222333322 221 11 123556554443322222223 49999999854
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecC
Q psy2891 336 LMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRD 410 (452)
Q Consensus 336 ~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~ 410 (452)
.- -+ ......+...|+.++++.+.+||+++|--. .+...||.+++|+..
T Consensus 454 ~~------LD-~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-------------------~~~~~~d~i~~l~~G 502 (529)
T PRK15134 454 SS------LD-KTVQAQILALLKSLQQKHQLAYLFISHDLH-------------------VVRALCHQVIVLRQG 502 (529)
T ss_pred cc------cC-HHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-------------------HHHHhcCeEEEEECC
Confidence 21 12 223456778888888888999999988322 255678999998643
No 360
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.11 E-value=0.0029 Score=55.97 Aligned_cols=36 Identities=19% Similarity=0.399 Sum_probs=29.2
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 17 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 445554458899999999999999999999887654
No 361
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.11 E-value=0.0043 Score=59.26 Aligned_cols=36 Identities=22% Similarity=0.485 Sum_probs=29.8
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 17 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (274)
T PRK13644 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLL 52 (274)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 466664468999999999999999999998887643
No 362
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.10 E-value=0.0013 Score=62.56 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=34.7
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEE-EeCCCCHHHHHHHHHHHhCCCC
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAI-FSMEMSGIQLAMRMLGSVGKLD 270 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~-~s~E~~~~~i~~R~~a~~~~i~ 270 (452)
.+++|.|++|+|||+++..++..... .+..+.+ +....+..++...+. ...|++
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~~~~~~~~~~~~~~~~l~~i~-~~lG~~ 98 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQ-ERVVAAKLVNTRVDAEDLLRMVA-ADFGLE 98 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCC-CCeEEeeeeCCCCCHHHHHHHHH-HHcCCC
Confidence 38999999999999999999776532 2222222 445566666654443 334544
No 363
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.10 E-value=0.00089 Score=59.34 Aligned_cols=40 Identities=25% Similarity=0.425 Sum_probs=34.9
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
++|++++|.|.||+||||++..++.... ..|..+.+++.+
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~-~~g~~v~~id~D 41 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLR-EAGYPVEVLDGD 41 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEcCc
Confidence 5799999999999999999999999885 357789888765
No 364
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.09 E-value=0.0018 Score=59.30 Aligned_cols=174 Identities=18% Similarity=0.198 Sum_probs=92.4
Q ss_pred cCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCC-----CcEEE-------EeCCCCHHHHHHHHHHHh
Q psy2891 199 TGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENK-----LPVAI-------FSMEMSGIQLAMRMLGSV 266 (452)
Q Consensus 199 tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g-----~~vl~-------~s~E~~~~~i~~R~~a~~ 266 (452)
.-+..|+++.--+.+|+-+-|.|++|+||||++.=++--.--..| .+|.+ |..|.+..+-. ++.+.+
T Consensus 38 ~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi-~l~~~~ 116 (249)
T COG1134 38 AEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENI-YLRGLI 116 (249)
T ss_pred ceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHH-HHHHHH
Confidence 446678887556899999999999999999998766543321111 11221 23333333322 222333
Q ss_pred CCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEc-CCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCC
Q psy2891 267 GKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDE-TPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGEN 345 (452)
Q Consensus 267 ~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~-~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~ 345 (452)
.|.... +.+...+.+....+..=|++. -..+|- -...++.-....+-+|+++++|..-..-.
T Consensus 117 ~G~~~~----------ei~~~~~eIieFaELG~fi~~PvktYSS-GM~aRLaFsia~~~~pdILllDEvlavGD------ 179 (249)
T COG1134 117 LGLTRK----------EIDEKVDEIIEFAELGDFIDQPVKTYSS-GMYARLAFSVATHVEPDILLLDEVLAVGD------ 179 (249)
T ss_pred hCccHH----------HHHHHHHHHHHHHHHHHHhhCchhhccH-HHHHHHHHhhhhhcCCCEEEEehhhhcCC------
Confidence 444333 333222222222222112211 011221 22222222122221599999999743321
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCc
Q psy2891 346 RATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDE 411 (452)
Q Consensus 346 ~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~ 411 (452)
..-.......+..+.++. .+||+++|-. +.|.+.||.++.|..-+
T Consensus 180 -~~F~~K~~~rl~e~~~~~-~tiv~VSHd~-------------------~~I~~~Cd~~i~l~~G~ 224 (249)
T COG1134 180 -AAFQEKCLERLNELVEKN-KTIVLVSHDL-------------------GAIKQYCDRAIWLEHGQ 224 (249)
T ss_pred -HHHHHHHHHHHHHHHHcC-CEEEEEECCH-------------------HHHHHhcCeeEEEeCCE
Confidence 122345667777776655 7777877732 35889999999997643
No 365
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.09 E-value=0.0057 Score=62.95 Aligned_cols=38 Identities=21% Similarity=0.365 Sum_probs=28.1
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
|+.+..-+++.|+||+|||.+|..+|... |.+.+.++.
T Consensus 255 gl~~pkGILL~GPpGTGKTllAkaiA~e~----~~~~~~l~~ 292 (489)
T CHL00195 255 GLPTPRGLLLVGIQGTGKSLTAKAIANDW----QLPLLRLDV 292 (489)
T ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh----CCCEEEEEh
Confidence 45555568999999999999998887653 556655553
No 366
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.08 E-value=0.0026 Score=55.67 Aligned_cols=136 Identities=20% Similarity=0.260 Sum_probs=56.0
Q ss_pred EEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcc-hHHH-----HHHH
Q psy2891 217 IIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSD-DWPR-----INDS 290 (452)
Q Consensus 217 ~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~-~~~~-----~~~a 290 (452)
++|.|.||+||||++..++.+ |.+++ .| ....+..... ..+. ..++.. +... +...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-----g~~~v---~E-~ar~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~l~~~ 63 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-----GYPVV---PE-YAREIIEEGG----RRDR-----DTLPWEDDLLAFQEGILEQQ 63 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-----T-EEE------TTHHHHHHSS----SS-T-----TSS-TT-THHHHHHH--HHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-----CCeEE---ee-cHHHHHHHhc----cccc-----hhhhhcchHHHHHHHHHHHH
Confidence 689999999999999999865 55433 33 3343433322 1111 112211 1111 1111
Q ss_pred HH---HHhCCCeEEEcCCCCCH--------HHHHHHHHHHHHHcCCcc-EEEEcCcchhccCC-CCCCHHHHHHHHHHHH
Q psy2891 291 IK---KINKSQLYIDETPSLNV--------IELRANSRRLSRQCGKIG-VIIIDYLQLMSANS-RGENRATEISEISRNL 357 (452)
Q Consensus 291 ~~---~l~~~~l~i~~~~~~t~--------~~i~~~i~~~~~~~~~~~-~vvID~l~~i~~~~-~~~~~~~~~~~i~~~L 357 (452)
.+ ......+.|.|.+.++. .+....+.+..+... .+ +++++....+..+. +.. .......+-..+
T Consensus 64 ~~~~~~~~~~~~vi~Dr~~~d~~aY~~~~~~~~~~~l~~~~~~~~-yd~v~~l~~~~~~~~D~~R~~-~~~~r~~~~~~~ 141 (163)
T PF13521_consen 64 LEAEASAKSSDVVICDRGPLDTLAYSEFYFGDYPEELEREARLSR-YDLVFLLPPDPPWEQDGVRPE-DPEERERIDELL 141 (163)
T ss_dssp HHHHHHHH-SSEEEESS-HHHHHHHHHHHHS---HHHHHHHHHS---SEEEEEE-----------------SHHHHHHHH
T ss_pred HHHHHhhcCCCcEEEeCChHHHHHHHHHhcCcchHHHHHHHHhCC-CCEEEEeCCccccCCCCCCCC-CHHHHHHHHHHH
Confidence 11 22346788877653221 111111222222211 22 77777766552222 211 223345677888
Q ss_pred HHHHHHhCCcEEEEe
Q psy2891 358 KGLAKEINCPILALS 372 (452)
Q Consensus 358 k~lA~~~~i~vi~l~ 372 (452)
+.+.+++|++++.+.
T Consensus 142 ~~~l~~~~~~~~~v~ 156 (163)
T PF13521_consen 142 KELLERHGIPYIIVP 156 (163)
T ss_dssp HHHHHGGG---EEEE
T ss_pred HHHHHHCCCeEEEeC
Confidence 999999999999985
No 367
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.07 E-value=0.017 Score=54.65 Aligned_cols=35 Identities=14% Similarity=0.314 Sum_probs=28.9
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-.
T Consensus 27 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 61 (258)
T PRK14268 27 ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRM 61 (258)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45555445899999999999999999999887753
No 368
>PHA00729 NTP-binding motif containing protein
Probab=97.07 E-value=0.00069 Score=61.98 Aligned_cols=43 Identities=14% Similarity=0.274 Sum_probs=33.2
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHH------------HhCCCcEEEEeCCCCHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIA------------IENKLPVAIFSMEMSGIQL 258 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a------------~~~g~~vl~~s~E~~~~~i 258 (452)
-++|.|+||+|||++|..++..+. ...+..++|++.+.-...+
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L 73 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKI 73 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHH
Confidence 589999999999999999998753 2456778888876544333
No 369
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.07 E-value=0.005 Score=53.83 Aligned_cols=170 Identities=14% Similarity=0.217 Sum_probs=89.9
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCC-------CCcc-cc-----cc
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGK-------LDQH-KL-----RT 276 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~-------i~~~-~i-----~~ 276 (452)
-++.|+.+.|.|++|+|||||..=+|--..-.. ..+..-.-+++...=.+|=.+.... ++.. .+ ..
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~-G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~ 99 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPAS-GEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPG 99 (231)
T ss_pred eecCCcEEEEECCCCccHHHHHHHHHhccCCCC-ceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcc
Confidence 489999999999999999998766655443222 2233333333332223332222211 1100 00 11
Q ss_pred CCCCcchHHHHHHHHHHHhCCCeEEEc-CCCCCHH--HHHHHHHHHHHHcCCccEEEEcC-cchhccCCCCCCHHHHHHH
Q psy2891 277 GRLSSDDWPRINDSIKKINKSQLYIDE-TPSLNVI--ELRANSRRLSRQCGKIGVIIIDY-LQLMSANSRGENRATEISE 352 (452)
Q Consensus 277 g~l~~~~~~~~~~a~~~l~~~~l~i~~-~~~~t~~--~i~~~i~~~~~~~~~~~~vvID~-l~~i~~~~~~~~~~~~~~~ 352 (452)
=+++.++.+++..+..+..-.. +... .+.+|=. +=.+..|-+.+. -.+..+|. +..+.+ .-+ .+
T Consensus 100 LkL~a~~r~~v~~aa~~vGl~~-~~~RLP~~LSGGqRQRvALARclvR~---~PilLLDEPFsALdP-----~LR---~e 167 (231)
T COG3840 100 LKLNAEQREKVEAAAAQVGLAG-FLKRLPGELSGGQRQRVALARCLVRE---QPILLLDEPFSALDP-----ALR---AE 167 (231)
T ss_pred cccCHHHHHHHHHHHHHhChhh-HhhhCccccCchHHHHHHHHHHHhcc---CCeEEecCchhhcCH-----HHH---HH
Confidence 2567788888888776642111 1111 1223322 222334445544 23555554 333332 112 24
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCc
Q psy2891 353 ISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDE 411 (452)
Q Consensus 353 i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~ 411 (452)
+..-+..++.|.+.++++++|--. | ..+.||.++++.+-.
T Consensus 168 Ml~Lv~~l~~E~~~TllmVTH~~~-------------D------a~~ia~~~~fl~~Gr 207 (231)
T COG3840 168 MLALVSQLCDERKMTLLMVTHHPE-------------D------AARIADRVVFLDNGR 207 (231)
T ss_pred HHHHHHHHHHhhCCEEEEEeCCHH-------------H------HHHhhhceEEEeCCE
Confidence 445567788999999998887432 2 345689999986643
No 370
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.07 E-value=0.024 Score=52.92 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=28.7
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-.
T Consensus 15 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35555445899999999999999999999887754
No 371
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.06 E-value=0.015 Score=58.63 Aligned_cols=102 Identities=15% Similarity=0.259 Sum_probs=62.7
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhC-CCcEEEEeCCCCHHHHH--HHHHHHhCCCCccccccCCCCcchHHHH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIEN-KLPVAIFSMEMSGIQLA--MRMLGSVGKLDQHKLRTGRLSSDDWPRI 287 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~-g~~vl~~s~E~~~~~i~--~R~~a~~~~i~~~~i~~g~l~~~~~~~~ 287 (452)
+.+|+++.+.|++|+||||++.-+|....... +.+|.+++.+-..--.. .+..+...|++.....+ ..+ +
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~----~~d---l 260 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKD----IAD---L 260 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCC----HHH---H
Confidence 45788999999999999999999998764433 35777776664322111 33455556777653322 222 3
Q ss_pred HHHHHHHhCCCeEEEcCCCCCH--HHHHHHHHHH
Q psy2891 288 NDSIKKINKSQLYIDETPSLNV--IELRANSRRL 319 (452)
Q Consensus 288 ~~a~~~l~~~~l~i~~~~~~t~--~~i~~~i~~~ 319 (452)
..+...+.+..+.+.|+.+++. ..+...+..+
T Consensus 261 ~~al~~l~~~d~VLIDTaGrsqrd~~~~~~l~~l 294 (420)
T PRK14721 261 QLMLHELRGKHMVLIDTVGMSQRDQMLAEQIAML 294 (420)
T ss_pred HHHHHHhcCCCEEEecCCCCCcchHHHHHHHHHH
Confidence 3445556666666666666553 3445555544
No 372
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.06 E-value=0.0075 Score=53.56 Aligned_cols=140 Identities=11% Similarity=0.105 Sum_probs=73.1
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcc
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSD 282 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~ 282 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-......| .|. +..+. ......... ...++-.. ...+.+.
T Consensus 17 ~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G-~i~-~~g~~-~~~~~~~~~-~~i~~~~q---~~~~~~~ 89 (178)
T cd03247 17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQG-EIT-LDGVP-VSDLEKALS-SLISVLNQ---RPYLFDT 89 (178)
T ss_pred ceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCC-EEE-ECCEE-HHHHHHHHH-hhEEEEcc---CCeeecc
Confidence 45555456899999999999999999999988765432223 343 43331 111111111 11111000 0001000
Q ss_pred hHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHH--HHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHH
Q psy2891 283 DWPRINDSIKKINKSQLYIDETPSLNVIELRAN--SRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGL 360 (452)
Q Consensus 283 ~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~--i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~l 360 (452)
.+. +. + ...+|-.+.+.. ++.+. . +++++++|.-..- -+. .....+.+.|+.+
T Consensus 90 ---tv~---~~-----i----~~~LS~G~~qrv~laral~--~-~p~~lllDEP~~~------LD~-~~~~~l~~~l~~~ 144 (178)
T cd03247 90 ---TLR---NN-----L----GRRFSGGERQRLALARILL--Q-DAPIVLLDEPTVG------LDP-ITERQLLSLIFEV 144 (178)
T ss_pred ---cHH---Hh-----h----cccCCHHHHHHHHHHHHHh--c-CCCEEEEECCccc------CCH-HHHHHHHHHHHHH
Confidence 000 00 1 234554444332 33332 3 4999999985421 122 2234667777777
Q ss_pred HHHhCCcEEEEecCCc
Q psy2891 361 AKEINCPILALSQLNR 376 (452)
Q Consensus 361 A~~~~i~vi~l~ql~r 376 (452)
+ + +.+||+++|-..
T Consensus 145 ~-~-~~tii~~sh~~~ 158 (178)
T cd03247 145 L-K-DKTLIWITHHLT 158 (178)
T ss_pred c-C-CCEEEEEecCHH
Confidence 5 3 788888888864
No 373
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.05 E-value=0.0047 Score=61.22 Aligned_cols=54 Identities=15% Similarity=0.211 Sum_probs=37.6
Q ss_pred CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCC--CcEEEEeCC--CCHHHHHHHH
Q psy2891 209 SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENK--LPVAIFSME--MSGIQLAMRM 262 (452)
Q Consensus 209 gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g--~~vl~~s~E--~~~~~i~~R~ 262 (452)
-.+.+|+.+.|.|+||+|||+++..++.....++. ..+++++.| ....++...+
T Consensus 163 ~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsI 220 (415)
T TIGR00767 163 APIGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSV 220 (415)
T ss_pred EEeCCCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHh
Confidence 35789999999999999999999998887753211 224445556 4445555544
No 374
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=97.05 E-value=0.0086 Score=56.48 Aligned_cols=64 Identities=17% Similarity=0.237 Sum_probs=48.0
Q ss_pred ccccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHH
Q psy2891 194 VTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLA 259 (452)
Q Consensus 194 ~~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~ 259 (452)
...+.||+..+|-+. .+.+|+=..|.|++|+|||+++++...+.+ ..+..++|...-+..+++.
T Consensus 50 ~e~L~TGI~~ID~l~-pigrGQr~~Ifg~~g~GKt~L~l~~i~~~~-~~~v~~V~~~iGer~~ev~ 113 (274)
T cd01132 50 NEPLQTGIKAIDAMI-PIGRGQRELIIGDRQTGKTAIAIDTIINQK-GKKVYCIYVAIGQKASTVA 113 (274)
T ss_pred ccccccCCEEeeccC-CcccCCEEEeeCCCCCCccHHHHHHHHHhc-CCCeEEEEEecccchHHHH
Confidence 346899999999864 588999999999999999999877555543 2455557776665655543
No 375
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.04 E-value=0.013 Score=58.44 Aligned_cols=160 Identities=13% Similarity=0.187 Sum_probs=79.6
Q ss_pred cccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC--------CCHHHHHH-H--HHHHhC---CC
Q psy2891 204 LDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME--------MSGIQLAM-R--MLGSVG---KL 269 (452)
Q Consensus 204 LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E--------~~~~~i~~-R--~~a~~~---~i 269 (452)
|+.+.--+.+|+++.|.|++|+|||||+.-++--.--..| .| ++..+ ++..++.. | -++... .+
T Consensus 40 l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G-~I-~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 40 VANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRG-SV-LVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc-EE-EECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 4554345899999999999999999999887764422222 34 44432 23333221 1 111110 00
Q ss_pred Cc-ccccc----C----CCCcch-HHHHHHHHHHHhCCCeEEEc-CCCCCHHHHHH--HHHHHHHHcCCccEEEEcCcch
Q psy2891 270 DQ-HKLRT----G----RLSSDD-WPRINDSIKKINKSQLYIDE-TPSLNVIELRA--NSRRLSRQCGKIGVIIIDYLQL 336 (452)
Q Consensus 270 ~~-~~i~~----g----~l~~~~-~~~~~~a~~~l~~~~l~i~~-~~~~t~~~i~~--~i~~~~~~~~~~~~vvID~l~~ 336 (452)
-. ..+.+ + .++..+ ..+..++++.+. ..-+.+. ...+|-.+-+. .++.+. . +++++++|.-..
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vg-L~~~~~~~~~~LSgGq~QRV~LARALa--~-~P~ILLlDEPts 193 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVG-LAQWADKKPGELSGGMQQRVGLARAFA--M-DADILLMDEPFS 193 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-CchhhcCChhhCCHHHHHHHHHHHHHh--c-CCCEEEEECCCc
Confidence 00 00000 0 111111 122233333221 1111221 12355444332 333332 3 499999998532
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCc
Q psy2891 337 MSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNR 376 (452)
Q Consensus 337 i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r 376 (452)
+-+. .....+.+.|..+.++.+.+||+++|--.
T Consensus 194 ------~LD~-~~r~~l~~~L~~l~~~~~~TII~iTHdl~ 226 (382)
T TIGR03415 194 ------ALDP-LIRTQLQDELLELQAKLNKTIIFVSHDLD 226 (382)
T ss_pred ------cCCH-HHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 1122 23346777888888888999999988543
No 376
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=97.04 E-value=0.032 Score=53.07 Aligned_cols=36 Identities=14% Similarity=0.184 Sum_probs=29.8
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 34 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 34 ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred EEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 455554458999999999999999999998887644
No 377
>PRK01172 ski2-like helicase; Provisional
Probab=97.04 E-value=0.0077 Score=65.23 Aligned_cols=139 Identities=17% Similarity=0.193 Sum_probs=73.9
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHh-----CCCCccccccCCCCcchHH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSV-----GKLDQHKLRTGRLSSDDWP 285 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~-----~~i~~~~i~~g~l~~~~~~ 285 (452)
+..|+-++++||+|+|||..+...+..... .+.+++|+. |...++....... .|+... +..|..+...
T Consensus 34 l~~~~nvlv~apTGSGKTl~a~lail~~l~-~~~k~v~i~---P~raLa~q~~~~~~~l~~~g~~v~-~~~G~~~~~~-- 106 (674)
T PRK01172 34 LRKGENVIVSVPTAAGKTLIAYSAIYETFL-AGLKSIYIV---PLRSLAMEKYEELSRLRSLGMRVK-ISIGDYDDPP-- 106 (674)
T ss_pred HhcCCcEEEECCCCchHHHHHHHHHHHHHH-hCCcEEEEe---chHHHHHHHHHHHHHHhhcCCeEE-EEeCCCCCCh--
Confidence 345667999999999999988776666543 467899986 4445544332211 133222 1223332211
Q ss_pred HHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhC
Q psy2891 286 RINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEIN 365 (452)
Q Consensus 286 ~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~ 365 (452)
..+....+.+. |++.+...+++......++++||||-++.+.... +...+..+...++.+. .+
T Consensus 107 ------~~~~~~dIiv~-----Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~----rg~~le~ll~~~~~~~--~~ 169 (674)
T PRK01172 107 ------DFIKRYDVVIL-----TSEKADSLIHHDPYIINDVGLIVADEIHIIGDED----RGPTLETVLSSARYVN--PD 169 (674)
T ss_pred ------hhhccCCEEEE-----CHHHHHHHHhCChhHHhhcCEEEEecchhccCCC----ccHHHHHHHHHHHhcC--cC
Confidence 11223455554 3444444443322111258999999999886432 2223334444444332 24
Q ss_pred CcEEEEec
Q psy2891 366 CPILALSQ 373 (452)
Q Consensus 366 i~vi~l~q 373 (452)
+.+|+++-
T Consensus 170 ~riI~lSA 177 (674)
T PRK01172 170 ARILALSA 177 (674)
T ss_pred CcEEEEeC
Confidence 55555543
No 378
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.04 E-value=0.013 Score=58.98 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=25.0
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
-+.+|+..-|.||+|+||||++.-+.--.
T Consensus 358 ~l~~G~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 358 ALQAGEALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred EecCCceEEEECCCCccHHHHHHHHHccc
Confidence 46899999999999999999998776543
No 379
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.03 E-value=0.0019 Score=55.58 Aligned_cols=37 Identities=22% Similarity=0.323 Sum_probs=32.6
Q ss_pred EEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy2891 217 IIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS 254 (452)
Q Consensus 217 ~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~ 254 (452)
+.+.|++|+|||+|+.+++.... ..|.+|+.+..+..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~-~~g~~v~ii~~D~~ 38 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALR-ARGKRVAVLAIDPS 38 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEEeCCC
Confidence 67889999999999999999886 47899999998864
No 380
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=97.03 E-value=0.012 Score=51.55 Aligned_cols=131 Identities=17% Similarity=0.239 Sum_probs=68.6
Q ss_pred EEEeCCCCChhHHHHHHHHHHHHhCCCcEEEE-----eCCC-CHH-HHHHHHHHHhCCCCccccccCCCCcchHHHHHHH
Q psy2891 218 IVAGRPSMGKTAFSLNIGEHIAIENKLPVAIF-----SMEM-SGI-QLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDS 290 (452)
Q Consensus 218 ~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~-----s~E~-~~~-~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a 290 (452)
+.+..||+|||+++++++..++. +|.+|.|+ ..+. +.+ +++.+... ...+...+..-.....--..+..
T Consensus 2 I~~t~~~~GKT~va~~L~~~l~~-~g~~V~~~kP~~~~~~~~d~d~~~i~~~~~--~~~~~~~~~~~~~~~~~~p~~~~- 77 (166)
T TIGR00347 2 VTGTDTGVGKTVASSALAAKLKK-AGYSVGYYKPVQTGIEKTNSDALLLQNISG--TALDWDEVNPYAFALPLSPHIAA- 77 (166)
T ss_pred eecCCCCccHHHHHHHHHHHHHH-CCCcEEEEEeeeeCCCCCchHHHHHHHHcC--CCCchhccCCeeeCCCCChHHHH-
Confidence 45678999999999999999975 78999998 2332 111 22222211 11111111000000000000000
Q ss_pred HHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEE
Q psy2891 291 IKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILA 370 (452)
Q Consensus 291 ~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~ 370 (452)
.. ........++.+.++++.. +.|+||||.-..+..+.. .. -..-.+++.++.++|+
T Consensus 78 --~~--------~~~~~~~~~i~~~~~~l~~---~~D~viid~~g~~~~~~~-~~---------~~~~dl~~~~~~~vil 134 (166)
T TIGR00347 78 --DQ--------EGRPIDLEELSKHLRTLEQ---KYDFVLVEGAGGLCVPIT-EE---------YTTADLIKLLQLPVIL 134 (166)
T ss_pred --HH--------hCCCCCHHHHHHHHHHHHh---cCCEEEEEcCCccccCCC-CC---------CcHHHHHHHhCCCEEE
Confidence 00 0112445567777766542 389999999865443321 10 0123467788999999
Q ss_pred EecCC
Q psy2891 371 LSQLN 375 (452)
Q Consensus 371 l~ql~ 375 (452)
+..-+
T Consensus 135 V~~~~ 139 (166)
T TIGR00347 135 VVRVK 139 (166)
T ss_pred EECCC
Confidence 98543
No 381
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=97.03 E-value=0.0044 Score=61.47 Aligned_cols=128 Identities=21% Similarity=0.276 Sum_probs=81.1
Q ss_pred CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCC--------CcEEEEe--CCCCHHHHHHHHHHHhC-----------
Q psy2891 209 SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENK--------LPVAIFS--MEMSGIQLAMRMLGSVG----------- 267 (452)
Q Consensus 209 gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g--------~~vl~~s--~E~~~~~i~~R~~a~~~----------- 267 (452)
|.+..|+++.+.|+.|.|||||+.-+|--.--..| ++--|++ ..++.+++..+......
T Consensus 362 G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~ 441 (591)
T COG1245 362 GEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVK 441 (591)
T ss_pred CeeecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcC
Confidence 56889999999999999999999988854311112 2233554 45666776666544322
Q ss_pred CCCcccccc---CCCCcchHHHHHHHHHHHhCCCeEEEcCCC--CCHHH---HHHHHHHHHHHcC------CccEEEEcC
Q psy2891 268 KLDQHKLRT---GRLSSDDWPRINDSIKKINKSQLYIDETPS--LNVIE---LRANSRRLSRQCG------KIGVIIIDY 333 (452)
Q Consensus 268 ~i~~~~i~~---g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~--~t~~~---i~~~i~~~~~~~~------~~~~vvID~ 333 (452)
.+++..+.+ ..|+-.|++|+.-|+--.++..+|+.|.|. +.+++ .-..|+++....+ ..|++++||
T Consensus 442 pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dy 521 (591)
T COG1245 442 PLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDY 521 (591)
T ss_pred ccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhh
Confidence 223333332 357778899988777666778999988764 33333 2234555554443 256777777
Q ss_pred cch
Q psy2891 334 LQL 336 (452)
Q Consensus 334 l~~ 336 (452)
+..
T Consensus 522 vsD 524 (591)
T COG1245 522 VSD 524 (591)
T ss_pred hhc
Confidence 764
No 382
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=97.02 E-value=0.012 Score=59.89 Aligned_cols=65 Identities=14% Similarity=0.125 Sum_probs=50.9
Q ss_pred ccccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHH
Q psy2891 194 VTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLA 259 (452)
Q Consensus 194 ~~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~ 259 (452)
...+.||+..+|-++ .+.+|+=+.|.|++|+|||+++..++.+.+.++..-++|.-..+..+++.
T Consensus 124 ~e~l~TGir~ID~l~-pigkGQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~liGER~rEv~ 188 (461)
T PRK12597 124 TEILETGIKVIDLLC-PIAKGGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAGVGERSREGH 188 (461)
T ss_pred CcceecCCeeecccC-ccccCCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEcCCcchHHHH
Confidence 346899999999864 58899999999999999999999999999754444556665555555543
No 383
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.014 Score=57.95 Aligned_cols=99 Identities=20% Similarity=0.252 Sum_probs=62.6
Q ss_pred CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCc-EEEEeCCC--CHHHHHHHHHHHhCCCCccccccCCCCcchHH
Q psy2891 209 SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLP-VAIFSMEM--SGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWP 285 (452)
Q Consensus 209 gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~-vl~~s~E~--~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~ 285 (452)
.|..|.. ++|.|+||+|||+.+..++..+-...... +.|+.+.. ++.++..+++.....++.
T Consensus 38 ~~~~p~n-~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~-------------- 102 (366)
T COG1474 38 RGERPSN-IIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPL-------------- 102 (366)
T ss_pred cCCCCcc-EEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCC--------------
Confidence 3444444 78889999999999998888774332233 89997764 556677777654432221
Q ss_pred HHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCC
Q psy2891 286 RINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANS 341 (452)
Q Consensus 286 ~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~ 341 (452)
.+.+..++...+.+.....++.-+||+|-+..+....
T Consensus 103 -------------------~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~ 139 (366)
T COG1474 103 -------------------TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKD 139 (366)
T ss_pred -------------------CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcccc
Confidence 1233344444444444444457788999988887643
No 384
>PLN03140 ABC transporter G family member; Provisional
Probab=97.01 E-value=0.0069 Score=70.52 Aligned_cols=36 Identities=25% Similarity=0.368 Sum_probs=30.3
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.-|+.+.+-+++|+++.|.|++|+|||||+.-++-.
T Consensus 894 ~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~ 929 (1470)
T PLN03140 894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGR 929 (1470)
T ss_pred eEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCC
Confidence 345666667899999999999999999999887764
No 385
>PRK06851 hypothetical protein; Provisional
Probab=97.01 E-value=0.0089 Score=58.98 Aligned_cols=50 Identities=20% Similarity=0.402 Sum_probs=40.2
Q ss_pred ccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHH
Q psy2891 205 DKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQ 257 (452)
Q Consensus 205 D~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~ 257 (452)
|.++.++. .+++|.|+||+|||+++.+++..+. ++|..|.|+-+-+.++.
T Consensus 207 ~~l~~~~~--~~~~i~G~pG~GKstl~~~i~~~a~-~~G~~v~~~hC~~dPds 256 (367)
T PRK06851 207 PSLTEGVK--NRYFLKGRPGTGKSTMLKKIAKAAE-ERGFDVEVYHCGFDPDS 256 (367)
T ss_pred HhHhcccc--eEEEEeCCCCCcHHHHHHHHHHHHH-hCCCeEEEEeCCCCCCC
Confidence 44444443 3799999999999999999999986 57999999977777654
No 386
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.00 E-value=0.014 Score=58.56 Aligned_cols=160 Identities=14% Similarity=0.127 Sum_probs=86.3
Q ss_pred ccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC-----CCCHHHHHHHHHHHhCCCC
Q psy2891 196 GISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM-----EMSGIQLAMRMLGSVGKLD 270 (452)
Q Consensus 196 ~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~-----E~~~~~i~~R~~a~~~~i~ 270 (452)
.+| |+..+|.+.-.+++|++..|.|..|+|||||+.-+.--. +....-+|+.. -.|.+.+. .|+-
T Consensus 13 ~f~-~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~--~P~~GeI~v~G~~v~~~sP~dA~~-------~GIG 82 (501)
T COG3845 13 RFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLY--QPDSGEIRVDGKEVRIKSPRDAIR-------LGIG 82 (501)
T ss_pred EcC-CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcc--cCCcceEEECCEEeccCCHHHHHH-------cCCc
Confidence 344 788889987779999999999999999999987555433 12122222221 11222111 1111
Q ss_pred c--cc------------cccCCCC----cchHHHHHHHHHHHhC-CCeEEEc---CCCCCHHHHHHHHHHHHHHcCCccE
Q psy2891 271 Q--HK------------LRTGRLS----SDDWPRINDSIKKINK-SQLYIDE---TPSLNVIELRANSRRLSRQCGKIGV 328 (452)
Q Consensus 271 ~--~~------------i~~g~l~----~~~~~~~~~a~~~l~~-~~l~i~~---~~~~t~~~i~~~i~~~~~~~~~~~~ 328 (452)
. ++ +.-|.-+ --++.+..+.+..+.+ ..+.++. -.++++. .+++++-++.-+.++++
T Consensus 83 MVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG-~qQRVEIlKaLyr~a~i 161 (501)
T COG3845 83 MVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVG-EQQRVEILKALYRGARL 161 (501)
T ss_pred EEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcc-hhHHHHHHHHHhcCCCE
Confidence 1 00 0001100 0123333333333322 2233321 1234432 22233333333335999
Q ss_pred EEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecC
Q psy2891 329 IIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQL 374 (452)
Q Consensus 329 vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql 374 (452)
+|+|--+.+-.+ +++.++...|+.+++ .|.+||+++|=
T Consensus 162 LILDEPTaVLTP-------~E~~~lf~~l~~l~~-~G~tIi~ITHK 199 (501)
T COG3845 162 LILDEPTAVLTP-------QEADELFEILRRLAA-EGKTIIFITHK 199 (501)
T ss_pred EEEcCCcccCCH-------HHHHHHHHHHHHHHH-CCCEEEEEecc
Confidence 999998766553 456778888887765 68999999983
No 387
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.00 E-value=0.0048 Score=55.74 Aligned_cols=32 Identities=16% Similarity=0.316 Sum_probs=26.9
Q ss_pred ccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 207 ITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 207 ~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 43358899999999999999999998877643
No 388
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=96.99 E-value=0.008 Score=53.46 Aligned_cols=119 Identities=19% Similarity=0.289 Sum_probs=59.5
Q ss_pred CCcEE-EEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHH
Q psy2891 213 PGDLI-IVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSI 291 (452)
Q Consensus 213 ~G~l~-~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~ 291 (452)
+|.|. .+++.||+|||--+++-|.... ++|.-|+.=-.|.....-...++..+--++...+..
T Consensus 3 rGrLkIflG~apGVGKTy~ML~ea~~l~-~~G~DVViG~vethgR~et~~l~~gLe~iP~~~i~y--------------- 66 (211)
T PF02702_consen 3 RGRLKIFLGAAPGVGKTYAMLQEAHRLK-EQGVDVVIGYVETHGRPETEALLEGLEVIPRKKIEY--------------- 66 (211)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHH-HTT--EEEEE---TT-HHHHHHHCTS-B---EEEEE---------------
T ss_pred CccEEEEEecCCCCCHHHHHHHHHHHHH-HCCCCEEEEEecCCCcHHHHHHHcCCCcCCCeeEee---------------
Confidence 45554 5677899999999999888875 578877765566443333333331111111111110
Q ss_pred HHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCC-CCCCHHHHHHHHHHHHHHHHHHhCCcEEE
Q psy2891 292 KKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANS-RGENRATEISEISRNLKGLAKEINCPILA 370 (452)
Q Consensus 292 ~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~-~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~ 370 (452)
....+. .+.++.+.+ + +|.+|+||-|..-..++ +...+|+.+.++. +.||.|+.
T Consensus 67 -----~g~~~~---E~DldaiL~---R------~P~vvLVDELAHtN~pgsr~~kR~qDVeeLL--------~aGIdV~T 121 (211)
T PF02702_consen 67 -----RGRTLE---EMDLDAILA---R------RPQVVLVDELAHTNAPGSRHKKRYQDVEELL--------DAGIDVYT 121 (211)
T ss_dssp -----TTEEEE---E--HHHHHH---H--------SEEEES-TT-B--TT-SSSBHHHHHHHHH--------HTT-EEEE
T ss_pred -----CCEecc---cCCHHHHHh---c------CCCEEEeCcccccCCCCCCCcccHHhHHHHH--------HCCCeEEE
Confidence 011111 233444332 2 59999999998877664 5678998876653 47999988
Q ss_pred Ee
Q psy2891 371 LS 372 (452)
Q Consensus 371 l~ 372 (452)
+-
T Consensus 122 Tl 123 (211)
T PF02702_consen 122 TL 123 (211)
T ss_dssp EE
T ss_pred ee
Confidence 75
No 389
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.99 E-value=0.0038 Score=53.81 Aligned_cols=37 Identities=19% Similarity=0.348 Sum_probs=30.5
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM 253 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~ 253 (452)
+++|.|.||+|||+++..++.... ..|.++++++.+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~-~~g~~~~~i~~d~ 37 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF-QRGRPVYVLDGDN 37 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH-HcCCCEEEEcCHH
Confidence 478999999999999999999886 4577888876543
No 390
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=96.98 E-value=0.0047 Score=56.17 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=35.8
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGI 256 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~ 256 (452)
.-+.+.++.+|+|||+++.++|..++. .|.+|+.+.++....
T Consensus 18 kvI~v~s~kgG~GKTt~a~~LA~~la~-~G~rVllID~D~~~~ 59 (204)
T TIGR01007 18 KVLLITSVKPGEGKSTTSANIAVAFAQ-AGYKTLLIDGDMRNS 59 (204)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHh-CCCeEEEEeCCCCCh
Confidence 347777799999999999999999985 799999999986544
No 391
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.98 E-value=0.0089 Score=52.47 Aligned_cols=144 Identities=11% Similarity=0.115 Sum_probs=81.3
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC-----CCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHH
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM-----EMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRI 287 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~-----E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~ 287 (452)
+| ++.|.+.+|.|||+.|+.+|..++ .+|.+|+++-+ .........++ ++.......|..
T Consensus 5 ~G-li~v~~g~GkGKtt~a~g~a~ra~-~~g~~v~ivQFlKg~~~~GE~~~l~~~-----~~~~~~~g~g~~-------- 69 (173)
T TIGR00708 5 RG-IIIVHTGNGKGKTTAAFGMALRAL-GHGKKVGVIQFIKGAWPNGERAAFEPH-----GVEFQVMGTGFT-------- 69 (173)
T ss_pred cc-EEEEECCCCCChHHHHHHHHHHHH-HCCCeEEEEEEecCCcccChHHHHHhc-----CcEEEECCCCCe--------
Confidence 45 777777799999999999999997 58999986622 23333344332 344333222210
Q ss_pred HHHHHHHhCCCeEEEcCCCC---CHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHh
Q psy2891 288 NDSIKKINKSQLYIDETPSL---NVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEI 364 (452)
Q Consensus 288 ~~a~~~l~~~~l~i~~~~~~---t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~ 364 (452)
+....+.- ...+..+.+++..... .+|+||+|-+.....-+ .-+ ..++.+.|+. +--
T Consensus 70 ------------~~~~~~~~~~~~~~~~~~~a~~~l~~~-~~DlvVLDEi~~A~~~g-li~----~~~v~~lL~~--rp~ 129 (173)
T TIGR00708 70 ------------WETQNREADTAIAKAAWQHAKEMLADP-ELDLVLLDELTYALKYG-YLD----VEEVVEALQE--RPG 129 (173)
T ss_pred ------------ecCCCcHHHHHHHHHHHHHHHHHHhcC-CCCEEEehhhHHHHHCC-CcC----HHHHHHHHHh--CCC
Confidence 00000000 0223333444444433 59999999998655432 111 1244555543 455
Q ss_pred CCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEec
Q psy2891 365 NCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYR 409 (452)
Q Consensus 365 ~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r 409 (452)
++.||++..-. +..+-..||.|--+..
T Consensus 130 ~~evVlTGR~~------------------p~~l~e~AD~VTEm~~ 156 (173)
T TIGR00708 130 HQHVIITGRGC------------------PQDLLELADLVTEMRP 156 (173)
T ss_pred CCEEEEECCCC------------------CHHHHHhCceeeeecc
Confidence 77888875311 2356778999876643
No 392
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=96.97 E-value=0.0055 Score=63.77 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=29.2
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-.
T Consensus 13 il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 47 (491)
T PRK10982 13 ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGI 47 (491)
T ss_pred eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 46666446899999999999999999999877754
No 393
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=96.97 E-value=0.0045 Score=64.58 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=30.1
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.-.+.+|+++.|.|++|+|||||+.-++-..
T Consensus 19 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 54 (501)
T PRK11288 19 ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNY 54 (501)
T ss_pred EEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 466665568999999999999999999998877543
No 394
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=96.97 E-value=0.0014 Score=56.74 Aligned_cols=45 Identities=18% Similarity=0.298 Sum_probs=33.5
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMR 261 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R 261 (452)
+.+++..+|+|||+++.++|..++. .+.+|+++.++.....+...
T Consensus 3 i~v~s~~~g~G~t~~a~~lA~~la~-~~~~Vllid~~~~~~~~~~~ 47 (157)
T PF13614_consen 3 IAVWSPKGGVGKTTLALNLAAALAR-KGKKVLLIDFDFFSPSLSRL 47 (157)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH-TTT-EEEEE--SSS-HHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHh-cCCCeEEEECCCCCCCcccc
Confidence 4566669999999999999999986 67789999999876655533
No 395
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.96 E-value=0.018 Score=54.26 Aligned_cols=35 Identities=9% Similarity=0.209 Sum_probs=29.1
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-.
T Consensus 19 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45665456899999999999999999999877654
No 396
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=96.95 E-value=0.0053 Score=64.17 Aligned_cols=34 Identities=18% Similarity=0.340 Sum_probs=28.2
Q ss_pred cccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 204 LDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 204 LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
|+.+.--+++|+++.|.|++|+|||||+.-++-.
T Consensus 279 l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl 312 (510)
T PRK15439 279 FRNISLEVRAGEILGLAGVVGAGRTELAETLYGL 312 (510)
T ss_pred ccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 5555445889999999999999999999877754
No 397
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.94 E-value=0.0012 Score=62.31 Aligned_cols=46 Identities=22% Similarity=0.500 Sum_probs=39.4
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHH
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRML 263 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~ 263 (452)
.+.-+++.|+||+|||.++..++..++ +.|.+|+|++. .+++.++.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~~~----~el~~~Lk 149 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFITA----PDLLSKLK 149 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEEH----HHHHHHHH
Confidence 566799999999999999999999998 68999999965 45666664
No 398
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.93 E-value=0.0012 Score=54.39 Aligned_cols=23 Identities=30% Similarity=0.731 Sum_probs=20.8
Q ss_pred EEEEEeCCCCChhHHHHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
+++|+|+||+||||+|..++...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998765
No 399
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=96.93 E-value=0.0053 Score=57.83 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=28.4
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGE 236 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~ 236 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-
T Consensus 22 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 55 (252)
T CHL00131 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG 55 (252)
T ss_pred eeecceeEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 4555544589999999999999999999987765
No 400
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.93 E-value=0.027 Score=53.59 Aligned_cols=35 Identities=11% Similarity=0.296 Sum_probs=29.0
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-.
T Consensus 28 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 28 AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred EEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45555445899999999999999999999887754
No 401
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.93 E-value=0.015 Score=62.81 Aligned_cols=56 Identities=13% Similarity=0.105 Sum_probs=38.4
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHH---hC---CCcEEEEeCCC--CHHHHHHHHHHH
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAI---EN---KLPVAIFSMEM--SGIQLAMRMLGS 265 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~---~~---g~~vl~~s~E~--~~~~i~~R~~a~ 265 (452)
|-.++.++.|.|+||+|||+.+..++..+.. .. ...++|+.+.. ++..+...+...
T Consensus 777 gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qq 840 (1164)
T PTZ00112 777 QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQ 840 (1164)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHH
Confidence 4456677889999999999999988766531 12 24578888752 455566665533
No 402
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.92 E-value=0.019 Score=52.61 Aligned_cols=35 Identities=23% Similarity=0.161 Sum_probs=28.1
Q ss_pred cccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 204 LDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 204 LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
|+.+.--+.+|+++.|.|++|+|||||+.-++--.
T Consensus 3 l~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 3 LDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34444458999999999999999999998777543
No 403
>smart00766 DnaG_DnaB_bind DNA primase DnaG DnaB-binding. DnaG_DnaB_bind defines a domain of primase required for functional interaction with DnaB that attracts primase to the replication fork. DnaG_DnaB_bind is responsible for the interaction between DnaG and DnaB.
Probab=96.92 E-value=0.0019 Score=53.12 Aligned_cols=98 Identities=13% Similarity=0.095 Sum_probs=64.5
Q ss_pred HHHHHHHHhcCcccHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCCcccccCHHHHHHHHh--
Q psy2891 22 EQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITVFDSLSNTGNAEEIGGLSYLNSLAQ-- 99 (452)
Q Consensus 22 E~~vLg~ll~~~~~~~~i~~~L~p~~F~~~~h~~If~~i~~l~~~~~~id~~tv~~~l~~~~~~~~~gg~~~l~~l~~-- 99 (452)
|+.+|+.++.+|+.+..+...+.+++|.+|.++.||..+......|. ++...+...+.+.. + ...+..+..
T Consensus 1 ~r~lL~lll~~P~l~~~v~~~~~~~~f~~~~~~~l~~~l~~~~~~~~-~~~~~l~~~~~~~~-~-----~~~l~~l~~~~ 73 (125)
T smart00766 1 MRELIRLLLQNPELASLVPDLLTLEDFTHPGLALLAELLATCRGNPG-LTTGQLLEHWRDTP-Y-----EELLSELAVWD 73 (125)
T ss_pred CHHHHHHHHHCHHHHhhCCCchhhhhcccccHHHHHHHHHHHHcCCC-CcHHHHHHHHcCCh-H-----HHHHHHHHhcc
Confidence 57899999999999998877778999999999999999955544444 47777777774321 1 223444432
Q ss_pred -cCCC---hHhHHHHHHHHHHHHHHHHHHHH
Q psy2891 100 -NIPS---AANIRRYAEIVRDRGILRKLITV 126 (452)
Q Consensus 100 -~~~~---~~n~~~y~~~l~~~~~~R~l~~~ 126 (452)
..+. ...+..+...+++....+++...
T Consensus 74 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~L 104 (125)
T smart00766 74 HLIDEENLEEEFLDTLARLRKQLLERRIEEL 104 (125)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 12355666666666655555444
No 404
>KOG0736|consensus
Probab=96.92 E-value=0.013 Score=61.70 Aligned_cols=118 Identities=23% Similarity=0.347 Sum_probs=78.0
Q ss_pred ccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHH
Q psy2891 207 ITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPR 286 (452)
Q Consensus 207 ~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~ 286 (452)
...|+++.+=+++.||||+|||-+|..+|-.. ..-|+|--.+ ++..+.+.
T Consensus 698 fssglrkRSGILLYGPPGTGKTLlAKAVATEc------sL~FlSVKGP--ELLNMYVG---------------------- 747 (953)
T KOG0736|consen 698 FSSGLRKRSGILLYGPPGTGKTLLAKAVATEC------SLNFLSVKGP--ELLNMYVG---------------------- 747 (953)
T ss_pred hhccccccceeEEECCCCCchHHHHHHHHhhc------eeeEEeecCH--HHHHHHhc----------------------
Confidence 35689988889999999999999887776544 3456665433 44444331
Q ss_pred HHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCC-C----CCCHHHHHHHHHHHHHHHH
Q psy2891 287 INDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANS-R----GENRATEISEISRNLKGLA 361 (452)
Q Consensus 287 ~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~-~----~~~~~~~~~~i~~~Lk~lA 361 (452)
. +-+.+++..++.+.. .|-+||+|-|..+.+.. + +.-....+.++..+|..+.
T Consensus 748 ----------------q----SE~NVR~VFerAR~A--~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls 805 (953)
T KOG0736|consen 748 ----------------Q----SEENVREVFERARSA--APCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLS 805 (953)
T ss_pred ----------------c----hHHHHHHHHHHhhcc--CCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhccc
Confidence 0 112344444444333 59999999999988653 1 2223445667777777777
Q ss_pred HHhCCcEEEEecCCc
Q psy2891 362 KEINCPILALSQLNR 376 (452)
Q Consensus 362 ~~~~i~vi~l~ql~r 376 (452)
....-.|+++.-.||
T Consensus 806 ~~~s~~VFViGATNR 820 (953)
T KOG0736|consen 806 DSSSQDVFVIGATNR 820 (953)
T ss_pred CCCCCceEEEecCCC
Confidence 767778899888886
No 405
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.92 E-value=0.0087 Score=58.51 Aligned_cols=37 Identities=11% Similarity=0.099 Sum_probs=28.1
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEe
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFS 250 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s 250 (452)
|+++--.++|.||||+|||.+|..+|..+ |.+.+.+|
T Consensus 144 ~ik~PlgllL~GPPGcGKTllAraiA~el----g~~~i~vs 180 (413)
T PLN00020 144 NIKVPLILGIWGGKGQGKSFQCELVFKKM----GIEPIVMS 180 (413)
T ss_pred CCCCCeEEEeeCCCCCCHHHHHHHHHHHc----CCCeEEEE
Confidence 46666679999999999999998888764 45554443
No 406
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.89 E-value=0.0034 Score=59.08 Aligned_cols=66 Identities=18% Similarity=0.169 Sum_probs=48.0
Q ss_pred cccccCccccccccCC-------CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Q psy2891 195 TGISTGFFELDKITSG-------LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRM 262 (452)
Q Consensus 195 ~~i~tg~~~LD~~~gG-------~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~ 262 (452)
.-||+.++.|+++.-. -.+..|++++||+|+||||-+..+.-++ ++..+.-+++.|.+-+-+..--
T Consensus 99 R~Ip~~i~~~e~LglP~i~~~~~~~~~GLILVTGpTGSGKSTTlAamId~i--N~~~~~HIlTIEDPIE~vh~sk 171 (353)
T COG2805 99 RLIPSKIPTLEELGLPPIVRELAESPRGLILVTGPTGSGKSTTLAAMIDYI--NKHKAKHILTIEDPIEYVHESK 171 (353)
T ss_pred eccCccCCCHHHcCCCHHHHHHHhCCCceEEEeCCCCCcHHHHHHHHHHHH--hccCCcceEEecCchHhhhcch
Confidence 4467777777765211 1344599999999999999988888877 3457777889999987665443
No 407
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=96.89 E-value=0.019 Score=58.06 Aligned_cols=64 Identities=20% Similarity=0.148 Sum_probs=50.1
Q ss_pred ccccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHH
Q psy2891 194 VTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQL 258 (452)
Q Consensus 194 ~~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i 258 (452)
...+.||+..+|-++ .+-+|+=..|.|++|+|||+++.+++.+.......-++|.-.-+..+++
T Consensus 124 ~e~l~TGiraID~l~-pig~GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER~rEv 187 (461)
T TIGR01039 124 VEILETGIKVIDLLA-PYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREG 187 (461)
T ss_pred ccccccCceeecccC-CcccCCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecCCchHH
Confidence 346899999999874 5889999999999999999999999999865434456666554454544
No 408
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=96.88 E-value=0.0097 Score=60.32 Aligned_cols=63 Identities=19% Similarity=0.132 Sum_probs=50.2
Q ss_pred cccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHH
Q psy2891 195 TGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQL 258 (452)
Q Consensus 195 ~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i 258 (452)
..+.||+..+|-++ .+-+|+=..|.|++|+|||+++.+++.+.+......++|.-.-+..+++
T Consensus 126 ~~l~TGiraID~l~-pigkGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER~rEv 188 (463)
T PRK09280 126 EILETGIKVIDLLA-PYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREG 188 (463)
T ss_pred ceeccCCeeecccC-CcccCCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHH
Confidence 46899999999864 5889999999999999999999999999875434456666655555554
No 409
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=96.87 E-value=0.0072 Score=63.13 Aligned_cols=36 Identities=17% Similarity=0.408 Sum_probs=29.7
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 20 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (506)
T PRK13549 20 ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY 55 (506)
T ss_pred eecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 466664458999999999999999999998877643
No 410
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.87 E-value=0.0066 Score=54.99 Aligned_cols=41 Identities=15% Similarity=0.234 Sum_probs=34.6
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM 253 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~ 253 (452)
++|.++.|.|.||+||||++..++.... ..|.+++++..+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~-~~~~~~~~ld~d~ 62 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH-ELGVSTYLLDGDN 62 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-hCCCCEEEEcCEe
Confidence 6788999999999999999999998775 3577888886643
No 411
>COG1204 Superfamily II helicase [General function prediction only]
Probab=96.86 E-value=0.0059 Score=66.18 Aligned_cols=147 Identities=16% Similarity=0.204 Sum_probs=82.3
Q ss_pred CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC-CHHHHHHHHH-HHhCCCCccccccCCCCcchHHH
Q psy2891 209 SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM-SGIQLAMRML-GSVGKLDQHKLRTGRLSSDDWPR 286 (452)
Q Consensus 209 gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~-~~~~i~~R~~-a~~~~i~~~~i~~g~l~~~~~~~ 286 (452)
.|+..|+=++|++|+|+|||.+|.-.+.+...+.|.+|+|+.-=- =..+...++- -...|+... +.+|......
T Consensus 42 ~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~-~~TgD~~~~~--- 117 (766)
T COG1204 42 KGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVG-ISTGDYDLDD--- 117 (766)
T ss_pred ccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEE-EecCCcccch---
Confidence 455557789999999999999999888888766578999985321 1122222222 011233322 2234433211
Q ss_pred HHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCC
Q psy2891 287 INDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINC 366 (452)
Q Consensus 287 ~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i 366 (452)
+++.+..+.|. |.+.+-...++...-...+++||||-++.+....++. -+..+...++.+.. .+
T Consensus 118 -----~~l~~~~ViVt-----T~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~----~lE~iv~r~~~~~~--~~ 181 (766)
T COG1204 118 -----ERLARYDVIVT-----TPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGP----VLESIVARMRRLNE--LI 181 (766)
T ss_pred -----hhhccCCEEEE-----chHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCc----eehhHHHHHHhhCc--ce
Confidence 23445566664 3334433333221111159999999999998753322 23344444444332 27
Q ss_pred cEEEEecCC
Q psy2891 367 PILALSQLN 375 (452)
Q Consensus 367 ~vi~l~ql~ 375 (452)
-++.++-.-
T Consensus 182 rivgLSATl 190 (766)
T COG1204 182 RIVGLSATL 190 (766)
T ss_pred EEEEEeeec
Confidence 778777543
No 412
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=96.86 E-value=0.0089 Score=62.34 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=27.6
Q ss_pred cccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 204 LDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 204 LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
|+.+.--+.+|+++.|.|++|+|||||+.-++-.
T Consensus 268 l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~ 301 (501)
T PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGA 301 (501)
T ss_pred cccceEEEcCCcEEEEecCCCCCHHHHHHHHhCC
Confidence 4444335789999999999999999999877743
No 413
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=96.86 E-value=0.0021 Score=56.74 Aligned_cols=65 Identities=22% Similarity=0.333 Sum_probs=44.4
Q ss_pred cCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEe-CC---CCHHHHHHHHHH
Q psy2891 199 TGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFS-ME---MSGIQLAMRMLG 264 (452)
Q Consensus 199 tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s-~E---~~~~~i~~R~~a 264 (452)
-||..|+.+.--+.+|++-+|.||.|+|||||+--|.-..- -...+|+|-. .+ ++..+++++=+.
T Consensus 16 ~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr-p~~G~v~f~g~~dl~~~~e~~IAr~GIG 84 (249)
T COG4674 16 GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR-PQEGEVLFDGDTDLTKLPEHRIARAGIG 84 (249)
T ss_pred cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC-CCcceEEEcCchhhccCCHHHHHHhccC
Confidence 38889998866789999999999999999999876665441 1223455543 23 344555544443
No 414
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.84 E-value=0.0024 Score=61.33 Aligned_cols=59 Identities=24% Similarity=0.435 Sum_probs=45.7
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcE------EEEeCCCCHHHHHHHHHHHhCCCCc
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPV------AIFSMEMSGIQLAMRMLGSVGKLDQ 271 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~v------l~~s~E~~~~~i~~R~~a~~~~i~~ 271 (452)
=..|.-++++||||+|||++|+.++..+- .+.|- =++|+|++..+.+.+.+....|+-.
T Consensus 62 k~aGrgiLi~GppgTGKTAlA~gIa~eLG--~dvPF~~isgsEiYS~E~kKTE~L~qa~RraIGvri 126 (450)
T COG1224 62 KMAGRGILIVGPPGTGKTALAMGIARELG--EDVPFVAISGSEIYSLEVKKTEALTQALRRAIGVRI 126 (450)
T ss_pred cccccEEEEECCCCCcHHHHHHHHHHHhC--CCCCceeeccceeeeecccHHHHHHHHHHHhhceEe
Confidence 34467799999999999999999998763 33332 2579999999998888877766544
No 415
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.84 E-value=0.0095 Score=55.53 Aligned_cols=36 Identities=28% Similarity=0.534 Sum_probs=29.4
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 17 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 455554458899999999999999999998887654
No 416
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=96.84 E-value=0.013 Score=61.23 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=29.5
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-.
T Consensus 16 il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~ 50 (500)
T TIGR02633 16 ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGV 50 (500)
T ss_pred eecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46666556899999999999999999999887754
No 417
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=96.83 E-value=0.024 Score=53.16 Aligned_cols=35 Identities=20% Similarity=0.420 Sum_probs=29.0
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-.
T Consensus 16 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 45555445899999999999999999999877764
No 418
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.83 E-value=0.0059 Score=62.91 Aligned_cols=30 Identities=27% Similarity=0.515 Sum_probs=24.6
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHH
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIA 239 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a 239 (452)
|+++..-++|.||||+|||+++..++..+.
T Consensus 212 gl~~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 212 DLKPPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred cCCCCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 454444589999999999999999988774
No 419
>PLN03140 ABC transporter G family member; Provisional
Probab=96.83 E-value=0.012 Score=68.64 Aligned_cols=40 Identities=25% Similarity=0.453 Sum_probs=34.3
Q ss_pred cCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 199 TGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 199 tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.+..-|+.+.+-+++|+++.|.|+||+|||||+.-++-..
T Consensus 176 ~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l 215 (1470)
T PLN03140 176 TKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKL 215 (1470)
T ss_pred ccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3566788887789999999999999999999998887654
No 420
>PRK13409 putative ATPase RIL; Provisional
Probab=96.83 E-value=0.0074 Score=63.99 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=27.5
Q ss_pred cccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 204 LDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 204 LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
|..+. -+.+|+++.|.|++|+||||++.-++-..
T Consensus 90 L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l 123 (590)
T PRK13409 90 LYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGEL 123 (590)
T ss_pred EecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 55544 48899999999999999999997766543
No 421
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=96.83 E-value=0.017 Score=58.44 Aligned_cols=65 Identities=14% Similarity=0.110 Sum_probs=51.0
Q ss_pred ccccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHH
Q psy2891 194 VTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLA 259 (452)
Q Consensus 194 ~~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~ 259 (452)
...+.||+..+|-+. .+.+|+=..|.|++|+|||+++.+++.+.+..+..-++|...-+..+++.
T Consensus 119 ~e~L~TGIr~ID~l~-pigkGQr~~Ifg~~G~GKt~l~~~~~~~~~~~~~~v~V~~~iGeR~rEv~ 183 (449)
T TIGR03305 119 SEVFETGIKAIDVLV-PLERGGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCGIGERCREGE 183 (449)
T ss_pred CcccccCceeecccc-ccccCCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHH
Confidence 346899999999864 58899999999999999999999999997633234566766655555543
No 422
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=96.82 E-value=0.0012 Score=60.07 Aligned_cols=167 Identities=14% Similarity=0.215 Sum_probs=78.5
Q ss_pred ccccCcccccc-ccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHh---CCCcEEEEeCCCCHHHHHHHHHHHhCCCCc
Q psy2891 196 GISTGFFELDK-ITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE---NKLPVAIFSMEMSGIQLAMRMLGSVGKLDQ 271 (452)
Q Consensus 196 ~i~tg~~~LD~-~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~---~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~ 271 (452)
.++.|...... +.-.+....-++|+|.||+|||+++..++..++.. ....+..+..-.. ++ +...+++.
T Consensus 19 ~i~~g~~~~~~~v~~dl~~~~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k~~--~l-----~~~~~~~~ 91 (205)
T PF01580_consen 19 PIPVGVDQRGDPVVLDLKKNPHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPKGS--DL-----APLADLPH 91 (205)
T ss_dssp EEEEEEETTS-EEEEEGGGS-SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSS--CC-----GGGTT-TT
T ss_pred EEEecccCCCCEEEEEcCCCceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCCcc--cc-----chhhhhhh
Confidence 45555554322 22234444469999999999999999999999862 2333444444322 11 11111111
Q ss_pred cccccCCCCcchHHHHHHHHHHHh----CCCeEEEcCCCCCHHHHHHHHHHHHH---------HcCCccEEEEcCcchhc
Q psy2891 272 HKLRTGRLSSDDWPRINDSIKKIN----KSQLYIDETPSLNVIELRANSRRLSR---------QCGKIGVIIIDYLQLMS 338 (452)
Q Consensus 272 ~~i~~g~l~~~~~~~~~~a~~~l~----~~~l~i~~~~~~t~~~i~~~i~~~~~---------~~~~~~~vvID~l~~i~ 338 (452)
+..+.. ..+.+.+...++++. ...-.+......++.........+.. .. ..-+++||.+..+.
T Consensus 92 --~~~~~~-~~~~~~~~~~l~~l~~em~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~iDe~~~l~ 167 (205)
T PF01580_consen 92 --VAAVAV-ATDPEEILRLLEELVEEMERRQALLREAGVRNIDDYNEERGELPDDIFADPWLKEL-PPIFIVIDEFAALR 167 (205)
T ss_dssp --BSS-S--B-SHHHHHHHHHHHHHHHHHHHHHHHHCT-SSHHHHHHHHHHHHHTT----B------EEEEEECTHHHHH
T ss_pred --hccccc-cccHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHhhhhccccccccccccC-chHHHHhhhHHHHH
Confidence 111001 112222222322221 11111111222233332222222111 22 36799999999887
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecC
Q psy2891 339 ANSRGENRATEISEISRNLKGLAKEINCPILALSQL 374 (452)
Q Consensus 339 ~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql 374 (452)
....... ...+...+..+-+.++..||.+|+.+|-
T Consensus 168 ~~~~~~~-~~~~~~~l~~i~~~gR~~Gi~li~~~Q~ 202 (205)
T PF01580_consen 168 DSAPDDS-KKEIMDLLARIARKGRAAGIHLILATQR 202 (205)
T ss_dssp HHHHHH-----HHHHHHHHHHHCGGGTEEEEEEESS
T ss_pred hhcchhh-HHHHHHHHHHHHHHHHhcCEEEEEEeCC
Confidence 5431111 2345566666777788999999999984
No 423
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=96.82 E-value=0.014 Score=58.65 Aligned_cols=138 Identities=16% Similarity=0.143 Sum_probs=89.8
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccc--ccCCCCcchHHHHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKL--RTGRLSSDDWPRINDSIKK 293 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i--~~g~l~~~~~~~~~~a~~~ 293 (452)
=++++-|+|.|||.+|.-++.+.....+.+++|.+.--|--.-..+.....+|++...+ .+|..++++... .
T Consensus 31 NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~------~ 104 (542)
T COG1111 31 NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREE------L 104 (542)
T ss_pred CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHH------H
Confidence 37788899999999999999877655566899999888877777788888899988765 358887765443 2
Q ss_pred HhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEec
Q psy2891 294 INKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQ 373 (452)
Q Consensus 294 l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~q 373 (452)
|...++++. +|..-.++|..-.-.+ . .+.++|+|--+.-.+. . +...+++..-..+ .+..|+.++-
T Consensus 105 w~~~kVfva-TPQvveNDl~~Grid~---~-dv~~lifDEAHRAvGn----y---AYv~Va~~y~~~~--k~~~ilgLTA 170 (542)
T COG1111 105 WAKKKVFVA-TPQVVENDLKAGRIDL---D-DVSLLIFDEAHRAVGN----Y---AYVFVAKEYLRSA--KNPLILGLTA 170 (542)
T ss_pred HhhCCEEEe-ccHHHHhHHhcCccCh---H-HceEEEechhhhccCc----c---hHHHHHHHHHHhc--cCceEEEEec
Confidence 445677775 3322223333322111 1 4789999997654432 1 2345555444443 3555666653
No 424
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=96.82 E-value=0.026 Score=59.18 Aligned_cols=59 Identities=8% Similarity=0.089 Sum_probs=42.5
Q ss_pred CccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhcee
Q psy2891 325 KIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVI 404 (452)
Q Consensus 325 ~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~v 404 (452)
+++++++|.-.. +-+ ......+.+.|+.++++.+.+||+++|--. .+.+.||.+
T Consensus 445 ~p~lLllDEPt~------~LD-~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-------------------~~~~~~d~i 498 (520)
T TIGR03269 445 EPRIVILDEPTG------TMD-PITKVDVTHSILKAREEMEQTFIIVSHDMD-------------------FVLDVCDRA 498 (520)
T ss_pred CCCEEEEeCCcc------cCC-HHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-------------------HHHHhCCEE
Confidence 499999998532 122 233457778888888888999999988432 255678999
Q ss_pred EEEec
Q psy2891 405 LFIYR 409 (452)
Q Consensus 405 l~l~r 409 (452)
+.|+.
T Consensus 499 ~~l~~ 503 (520)
T TIGR03269 499 ALMRD 503 (520)
T ss_pred EEEEC
Confidence 98864
No 425
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=96.81 E-value=0.015 Score=67.81 Aligned_cols=37 Identities=30% Similarity=0.542 Sum_probs=31.8
Q ss_pred ccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 201 FFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 201 ~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
..-|+.+.+-+++|+++.|.|+||+|||||+.-++-.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~ 110 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASN 110 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCC
Confidence 3457777777999999999999999999999888764
No 426
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=96.81 E-value=0.02 Score=66.75 Aligned_cols=160 Identities=18% Similarity=0.229 Sum_probs=80.2
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCC---cEEEEeCCCCHHHHHHHHHHHhCCCCc----ccc-
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKL---PVAIFSMEMSGIQLAMRMLGSVGKLDQ----HKL- 274 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~---~vl~~s~E~~~~~i~~R~~a~~~~i~~----~~i- 274 (452)
-|+.+.+-+++|+++.|.|++|+|||||+.-++-... .|. .-+++.......++ .|.++....-+. -.+
T Consensus 778 iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~--~g~~~~G~I~i~G~~~~~~~-~~~i~yv~Q~~~~~~~~Tv~ 854 (1394)
T TIGR00956 778 ILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVT--TGVITGGDRLVNGRPLDSSF-QRSIGYVQQQDLHLPTSTVR 854 (1394)
T ss_pred eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC--CCCcceeEEEECCEECChhh-hcceeeecccccCCCCCCHH
Confidence 4666666789999999999999999999987776432 111 12233332111121 222221111110 000
Q ss_pred ---------cc-CCCCcch-HHHHHHHHHHHhCC---CeEEEc-CCCCCHHHHHHHHHHHHHHcCCcc-EEEEcCcchhc
Q psy2891 275 ---------RT-GRLSSDD-WPRINDSIKKINKS---QLYIDE-TPSLNVIELRANSRRLSRQCGKIG-VIIIDYLQLMS 338 (452)
Q Consensus 275 ---------~~-g~l~~~~-~~~~~~a~~~l~~~---~l~i~~-~~~~t~~~i~~~i~~~~~~~~~~~-~vvID~l~~i~ 338 (452)
+. ...++++ ++++.+.++.+.-. +-.+.+ ...+|..+-+...-...--. +++ ++++|.-+.
T Consensus 855 E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~-~P~~iLlLDEPTs-- 931 (1394)
T TIGR00956 855 ESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVA-KPKLLLFLDEPTS-- 931 (1394)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHc-CCCeEEEEcCCCC--
Confidence 00 0122222 23344444443211 112211 11466665544322222223 486 999998432
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecC
Q psy2891 339 ANSRGENRATEISEISRNLKGLAKEINCPILALSQL 374 (452)
Q Consensus 339 ~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql 374 (452)
+-+. .....+.+.|++++++ |.+||+++|-
T Consensus 932 ----gLD~-~~~~~i~~~L~~la~~-g~tvI~t~H~ 961 (1394)
T TIGR00956 932 ----GLDS-QTAWSICKLMRKLADH-GQAILCTIHQ 961 (1394)
T ss_pred ----CCCH-HHHHHHHHHHHHHHHc-CCEEEEEecC
Confidence 2222 2345778888888864 7787777763
No 427
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.81 E-value=0.007 Score=59.23 Aligned_cols=141 Identities=13% Similarity=0.137 Sum_probs=71.2
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHH---
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDS--- 290 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a--- 290 (452)
+..++|.|+||+||||++..++... +.++ ..|...+.+.+. .. +- ..+..+++..+...
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~----~~~~---v~E~~R~~~~~~-~~---~~-------~~l~~~d~~~i~~g~~~ 223 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVF----NTTS---AWEYAREYVEEK-LG---GD-------EALQYSDYAQIALGQQR 223 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh----CCCE---EeehhHHHHHHh-cC---CC-------cccCHHHHHHHHHHHHH
Confidence 5689999999999999999988743 3444 344433322222 10 00 11222221111111
Q ss_pred --HHHHhC-CCeEEEcCCCCCHH---HHH-----HHHHHHHHHcCCcc-EEEEcCcchhccCC-CCCCHHHHHHHHHHHH
Q psy2891 291 --IKKINK-SQLYIDETPSLNVI---ELR-----ANSRRLSRQCGKIG-VIIIDYLQLMSANS-RGENRATEISEISRNL 357 (452)
Q Consensus 291 --~~~l~~-~~l~i~~~~~~t~~---~i~-----~~i~~~~~~~~~~~-~vvID~l~~i~~~~-~~~~~~~~~~~i~~~L 357 (452)
...+.. ..+.+.|.+.++.- ++. ..+....+.. +.+ +++++.......++ +.....+....+.+.|
T Consensus 224 ~~~~~~~~a~~iif~D~~~~~t~~y~~~~~~~~~~~~~~~~~~~-~ydl~~l~~p~~~~~~D~~R~~~~~~~R~~~~~ll 302 (325)
T TIGR01526 224 YIDYAVRHAHKIAFIDTDFITTQVFAKQYEGREHPFLDSDIAEY-PFDLTLLLKPNTEWVDDGLRSLGSQKQRQEFQQLL 302 (325)
T ss_pred HHHHHHhhcCCeEEEcCChHHHHHHHHHHcCCCCHHHHHHHHhc-CCCEEEECCCCCCCccCCcccCchHHHHHHHHHHH
Confidence 111211 24455554433210 000 0112222222 245 55556655433332 3233333445667799
Q ss_pred HHHHHHhCCcEEEEec
Q psy2891 358 KGLAKEINCPILALSQ 373 (452)
Q Consensus 358 k~lA~~~~i~vi~l~q 373 (452)
+++.+++|++++.+.|
T Consensus 303 ~~~l~~~G~~~v~Vtg 318 (325)
T TIGR01526 303 KKLLDEYGVPFVVIES 318 (325)
T ss_pred HHHHHHcCCcEEEEeC
Confidence 9999999999999988
No 428
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.80 E-value=0.038 Score=51.55 Aligned_cols=179 Identities=15% Similarity=0.151 Sum_probs=91.6
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC--CHHHHHHHHHHHhCCC------Ccccc
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM--SGIQLAMRMLGSVGKL------DQHKL 274 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~--~~~~i~~R~~a~~~~i------~~~~i 274 (452)
..-++.--+++|+++.+.|+.|+||||...-+.--..- .+..|-.-..+= ..++...++ ....|. +....
T Consensus 39 AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p-~~G~v~V~G~~Pf~~~~~~~~~~-~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLP-TSGKVRVNGKDPFRRREEYLRSI-GLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcccc-CCCeEEecCcCcchhHHHHHHHH-HHHhhhhheeeeechhh
Confidence 34444345899999999999999999987654433321 223344332221 112233333 222221 11100
Q ss_pred cc-------CCCCcchHHHHHHHHHHHhCCCeEEE-cCCCCCHHHH-HHHHHHHHHHcCCccEEEEcCcchhccCCCCCC
Q psy2891 275 RT-------GRLSSDDWPRINDSIKKINKSQLYID-ETPSLNVIEL-RANSRRLSRQCGKIGVIIIDYLQLMSANSRGEN 345 (452)
Q Consensus 275 ~~-------g~l~~~~~~~~~~a~~~l~~~~l~i~-~~~~~t~~~i-~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~ 345 (452)
.+ -.+++.++.+-.+....+-+..=++. ....+|..+= +..+. +.--| +|+++++|-.+.= -
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLa-aaLLh-~p~VLfLDEpTvg-------L 187 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELA-AALLH-PPKVLFLDEPTVG-------L 187 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHH-HHhcC-CCcEEEecCCccC-------c
Confidence 00 01223222211111111111110111 1233444332 22221 12235 4999999986531 1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCc
Q psy2891 346 RATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDE 411 (452)
Q Consensus 346 ~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~ 411 (452)
....-..+-+.|+....+++++|++++|-= +.|++.||.|++++.-+
T Consensus 188 DV~aq~~ir~Flke~n~~~~aTVllTTH~~-------------------~di~~lc~rv~~I~~Gq 234 (325)
T COG4586 188 DVNAQANIREFLKEYNEERQATVLLTTHIF-------------------DDIATLCDRVLLIDQGQ 234 (325)
T ss_pred chhHHHHHHHHHHHHHHhhCceEEEEecch-------------------hhHHHhhhheEEeeCCc
Confidence 112234667789999999999999999842 24899999999997654
No 429
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=96.80 E-value=0.011 Score=61.68 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=28.9
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 313 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVD 313 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 355553357899999999999999999998887543
No 430
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.77 E-value=0.014 Score=51.87 Aligned_cols=114 Identities=13% Similarity=0.043 Sum_probs=61.2
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHhC-CCcEEEEeCC-CCHHHHHHHHHHHhCCCC--ccccccCCCCcchHHHHHHH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIEN-KLPVAIFSME-MSGIQLAMRMLGSVGKLD--QHKLRTGRLSSDDWPRINDS 290 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~~-g~~vl~~s~E-~~~~~i~~R~~a~~~~i~--~~~i~~g~l~~~~~~~~~~a 290 (452)
...+|.|++|+|||+.+...+....... ..+++|++.. ....++..++........ ...+..+....+++.++
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 101 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKL--- 101 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHHH---
Confidence 4789999999999997777777765432 3678888663 223455555554332211 11112222112222221
Q ss_pred HHHHhCC-CeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhcc
Q psy2891 291 IKKINKS-QLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 291 ~~~l~~~-~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~ 339 (452)
.... .+.+. |.+.+...+........+++++|||..+.+..
T Consensus 102 ---~~~~~~v~~~-----t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~ 143 (201)
T smart00487 102 ---ESGKTDILVT-----TPGRLLDLLENDLLELSNVDLVILDEAHRLLD 143 (201)
T ss_pred ---hcCCCCEEEe-----ChHHHHHHHHcCCcCHhHCCEEEEECHHHHhc
Confidence 1122 44443 33444444433111111478999999998875
No 431
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=96.77 E-value=0.027 Score=55.30 Aligned_cols=178 Identities=16% Similarity=0.156 Sum_probs=97.7
Q ss_pred ccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC----CHHH---HHHHHHHHhCCCCcc-
Q psy2891 201 FFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM----SGIQ---LAMRMLGSVGKLDQH- 272 (452)
Q Consensus 201 ~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~----~~~~---i~~R~~a~~~~i~~~- 272 (452)
+...|.+.--+++|+..-|.|.+|+|||||++.+..-... . .-++|..+. +..+ +..|| .....-++.
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s-~--G~I~F~G~~i~~~~~~~mrplR~~m-QvVFQDPygS 375 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS-Q--GEIRFDGQDIDGLSRKEMRPLRRRM-QVVFQDPYGS 375 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc-C--ceEEECCccccccChhhhhhhhhhc-eEEEeCCCCC
Confidence 3445555445899999999999999999999988765532 2 233443332 1111 11111 111111111
Q ss_pred --------cc-ccC------CCCcch-HHHHHHHHHHHhCCCeEE-EcCCCCCH--HHHHHHHHHHHHHcCCccEEEEcC
Q psy2891 273 --------KL-RTG------RLSSDD-WPRINDSIKKINKSQLYI-DETPSLNV--IELRANSRRLSRQCGKIGVIIIDY 333 (452)
Q Consensus 273 --------~i-~~g------~l~~~~-~~~~~~a~~~l~~~~l~i-~~~~~~t~--~~i~~~i~~~~~~~~~~~~vvID~ 333 (452)
.| .+| .++..| .+++.+|.....-.+-.. .....+|= -+=.+.++.+.- +|.+|++|.
T Consensus 376 LsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliL---kP~~i~LDE 452 (534)
T COG4172 376 LSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALIL---KPELILLDE 452 (534)
T ss_pred CCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhc---CCcEEEecC
Confidence 11 111 334333 334555555442111111 11112331 233344444443 599999998
Q ss_pred cchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCc
Q psy2891 334 LQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDE 411 (452)
Q Consensus 334 l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~ 411 (452)
-+. .-+..-..++..-|+.|-+++|+.-+.++|==+ -+...||.||.+..-+
T Consensus 453 PTS-------ALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-------------------VvrAl~~~viVm~~Gk 504 (534)
T COG4172 453 PTS-------ALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-------------------VVRALCHRVIVMRDGK 504 (534)
T ss_pred Cch-------HhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-------------------HHHHhhceEEEEeCCE
Confidence 432 112233468889999999999999999998321 3455689999886544
No 432
>PLN03211 ABC transporter G-25; Provisional
Probab=96.75 E-value=0.013 Score=63.05 Aligned_cols=36 Identities=22% Similarity=0.393 Sum_probs=30.7
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.-|+.+.+-+++|+++.|.|++|+|||||+.-++-.
T Consensus 82 ~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~ 117 (659)
T PLN03211 82 TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGR 117 (659)
T ss_pred eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCC
Confidence 356777667999999999999999999998887754
No 433
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=96.75 E-value=0.015 Score=60.79 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=29.2
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+++|+++.|.|++|+|||||+.-++-.
T Consensus 277 vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 311 (506)
T PRK13549 277 RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGA 311 (506)
T ss_pred cccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCC
Confidence 45665445899999999999999999999888754
No 434
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.73 E-value=0.0029 Score=56.14 Aligned_cols=40 Identities=20% Similarity=0.200 Sum_probs=33.3
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
.++|.++++.|+||+||||++..++.... ..+..+.+++.
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~-~~~~~~~~~~~ 43 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLK-LKYSNVIYLDG 43 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHH-HcCCcEEEEec
Confidence 56788999999999999999999998875 35667777753
No 435
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.73 E-value=0.011 Score=58.12 Aligned_cols=60 Identities=13% Similarity=0.263 Sum_probs=40.7
Q ss_pred ccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhC-CCcEEEEeCCCCHHHH
Q psy2891 198 STGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIEN-KLPVAIFSMEMSGIQL 258 (452)
Q Consensus 198 ~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~-g~~vl~~s~E~~~~~i 258 (452)
+++...+|-+. .+-+|+=.+|.|+||+|||+++.+++..+..+. +..+.|+.......++
T Consensus 118 ~~~~RvID~l~-PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV 178 (380)
T PRK12608 118 DLSMRVVDLVA-PIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEV 178 (380)
T ss_pred chhHhhhhhee-ecCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCH
Confidence 35556677653 456788899999999999999999999886432 2224454444444433
No 436
>KOG0739|consensus
Probab=96.73 E-value=0.014 Score=54.81 Aligned_cols=97 Identities=24% Similarity=0.382 Sum_probs=62.2
Q ss_pred cccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccccc
Q psy2891 197 ISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRT 276 (452)
Q Consensus 197 i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~ 276 (452)
+|-.||-| .+|+-.|=.=+++.||||.|||-+|...|-.+ + ..|||. |...++.+++.
T Consensus 151 LPIKFPql--FtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA----n--STFFSv--SSSDLvSKWmG------------ 208 (439)
T KOG0739|consen 151 LPIKFPQL--FTGKRKPWRGILLYGPPGTGKSYLAKAVATEA----N--STFFSV--SSSDLVSKWMG------------ 208 (439)
T ss_pred ecccchhh--hcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc----C--CceEEe--ehHHHHHHHhc------------
Confidence 45555544 24666666669999999999998887666433 3 556776 34466666641
Q ss_pred CCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHH
Q psy2891 277 GRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRAT 348 (452)
Q Consensus 277 g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~ 348 (452)
+ -+.+...+-.+.+++ +|.+||||.+..+.... .+|+.+
T Consensus 209 ------E-------------------------SEkLVknLFemARe~-kPSIIFiDEiDslcg~r-~enEse 247 (439)
T KOG0739|consen 209 ------E-------------------------SEKLVKNLFEMAREN-KPSIIFIDEIDSLCGSR-SENESE 247 (439)
T ss_pred ------c-------------------------HHHHHHHHHHHHHhc-CCcEEEeehhhhhccCC-CCCchH
Confidence 0 123334444566777 59999999999877654 344433
No 437
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=96.72 E-value=0.011 Score=60.49 Aligned_cols=64 Identities=16% Similarity=0.244 Sum_probs=49.7
Q ss_pred ccccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHH
Q psy2891 194 VTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLA 259 (452)
Q Consensus 194 ~~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~ 259 (452)
...+.||+..+|-++ .+.+|+=..|.|.+|+|||+++++...+.. ..+..|+|...-....++.
T Consensus 143 ~epl~TGIkaID~l~-pigrGQR~~I~g~~g~GKt~Lal~~i~~~~-~~dv~~V~~~IGer~rev~ 206 (502)
T PRK13343 143 TEPLQTGIKVVDALI-PIGRGQRELIIGDRQTGKTAIAIDAIINQK-DSDVICVYVAIGQKASAVA 206 (502)
T ss_pred CcccccCCceecccc-ccccCCEEEeeCCCCCCccHHHHHHHHhhc-CCCEEEEEEEeccChHHHH
Confidence 346889999999974 588999999999999999999888777653 3455567777666655543
No 438
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=96.72 E-value=0.0045 Score=59.14 Aligned_cols=42 Identities=10% Similarity=0.109 Sum_probs=36.3
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQ 257 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~ 257 (452)
-+.+.++.+|.|||+++.++|..+|. .|.+|+.+.+......
T Consensus 105 vi~vts~~~g~Gktt~a~nLA~~la~-~g~~VllID~D~~~~~ 146 (274)
T TIGR03029 105 ALAVVSAKSGEGCSYIAANLAIVFSQ-LGEKTLLIDANLRDPV 146 (274)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHh-cCCeEEEEeCCCCCcc
Confidence 47888899999999999999999984 7999999999866543
No 439
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.71 E-value=0.018 Score=54.88 Aligned_cols=95 Identities=16% Similarity=0.244 Sum_probs=58.6
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKK 293 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~ 293 (452)
+.++-|.|+||+|||||+..++..+. ...++.++..+.....=..|+. ..|++...+.+|..-
T Consensus 104 ~~~v~l~G~pGsGKTTLl~~l~~~l~--~~~~~~VI~gD~~t~~Da~rI~--~~g~pvvqi~tG~~C------------- 166 (290)
T PRK10463 104 QLVLNLVSSPGSGKTTLLTETLMRLK--DSVPCAVIEGDQQTVNDAARIR--ATGTPAIQVNTGKGC------------- 166 (290)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc--cCCCEEEECCCcCcHHHHHHHH--hcCCcEEEecCCCCC-------------
Confidence 55899999999999999999988763 2357888877765443233332 355554444433211
Q ss_pred HhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhcc
Q psy2891 294 INKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 294 l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~ 339 (452)
-+.-..+...+..+... +.+++||+..+.+..
T Consensus 167 ------------hl~a~mv~~Al~~L~~~--~~d~liIEnvGnLvc 198 (290)
T PRK10463 167 ------------HLDAQMIADAAPRLPLD--DNGILFIENVGNLVC 198 (290)
T ss_pred ------------cCcHHHHHHHHHHHhhc--CCcEEEEECCCCccC
Confidence 11123344445555432 378999999876543
No 440
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.71 E-value=0.026 Score=53.56 Aligned_cols=158 Identities=15% Similarity=0.173 Sum_probs=86.9
Q ss_pred CccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHh-CCCcEEEEe---CCCCHHHHHHHHHHHhCCCCcccc-
Q psy2891 200 GFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE-NKLPVAIFS---MEMSGIQLAMRMLGSVGKLDQHKL- 274 (452)
Q Consensus 200 g~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~-~g~~vl~~s---~E~~~~~i~~R~~a~~~~i~~~~i- 274 (452)
.+..||.+.--+++|+++-|.|++|+||||+..-+= ...+ ...+|++-. ...+...+... ....|+=+.++
T Consensus 18 ~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN--~Le~PtsG~v~v~G~di~~l~~~~Lr~~--R~~IGMIFQhFn 93 (339)
T COG1135 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLIN--LLERPTSGSVFVDGQDLTALSEAELRQL--RQKIGMIFQHFN 93 (339)
T ss_pred ceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHh--ccCCCCCceEEEcCEecccCChHHHHHH--HhhccEEecccc
Confidence 467888886679999999999999999999976332 2211 123455544 34444443221 11111111110
Q ss_pred ----------------ccCCCCcchH-HHHHHHHHHHhCCCeEEEc-CCCCCH--HHHHHHHHHHHHHcCCccEEEEcCc
Q psy2891 275 ----------------RTGRLSSDDW-PRINDSIKKINKSQLYIDE-TPSLNV--IELRANSRRLSRQCGKIGVIIIDYL 334 (452)
Q Consensus 275 ----------------~~g~l~~~~~-~~~~~a~~~l~~~~l~i~~-~~~~t~--~~i~~~i~~~~~~~~~~~~vvID~l 334 (452)
..| .+.++. .|+.+..+.+. ..=+-+. ...+|- .+-...+|.+.. +|++++-|--
T Consensus 94 LLssrTV~~NvA~PLeiag-~~k~ei~~RV~elLelVg-L~dk~~~yP~qLSGGQKQRVaIARALa~---~P~iLL~DEa 168 (339)
T COG1135 94 LLSSRTVFENVAFPLELAG-VPKAEIKQRVAELLELVG-LSDKADRYPAQLSGGQKQRVAIARALAN---NPKILLCDEA 168 (339)
T ss_pred ccccchHHhhhhhhHhhcC-CCHHHHHHHHHHHHHHcC-ChhhhccCchhcCcchhhHHHHHHHHhc---CCCEEEecCc
Confidence 012 233222 23444333321 1111111 122332 234455555543 4999999987
Q ss_pred chhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEec
Q psy2891 335 QLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQ 373 (452)
Q Consensus 335 ~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~q 373 (452)
+.--.+. --..|..-|+.+-+++|++|+++.|
T Consensus 169 TSALDP~-------TT~sIL~LL~~In~~lglTIvlITH 200 (339)
T COG1135 169 TSALDPE-------TTQSILELLKDINRELGLTIVLITH 200 (339)
T ss_pred cccCChH-------HHHHHHHHHHHHHHHcCCEEEEEec
Confidence 6433221 2347788999999999999999987
No 441
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.70 E-value=0.24 Score=47.74 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=34.5
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM 253 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~ 253 (452)
..++++.|-.|+||||-.--+|..+. ++|++|+...++-
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~-~~g~~VllaA~DT 177 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLK-QQGKSVLLAAGDT 177 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHH-HCCCeEEEEecch
Confidence 45899999999999999999999985 6899999987763
No 442
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.70 E-value=0.0031 Score=58.25 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=26.0
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHH
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIA 239 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a 239 (452)
...++++++|.|+.|+|||+++..++....
T Consensus 26 ~~~~~~~~~l~G~n~~GKstll~~i~~~~~ 55 (222)
T cd03285 26 TRGKSRFLIITGPNMGGKSTYIRQIGVIVL 55 (222)
T ss_pred eecCCeEEEEECCCCCChHHHHHHHHHHHH
Confidence 356789999999999999999999987643
No 443
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.70 E-value=0.011 Score=61.65 Aligned_cols=34 Identities=24% Similarity=0.508 Sum_probs=25.8
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEe
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFS 250 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s 250 (452)
.++| +++.||||+|||+++..+|.. .+.++++++
T Consensus 87 ~~~g--iLL~GppGtGKT~la~alA~~----~~~~~~~i~ 120 (495)
T TIGR01241 87 IPKG--VLLVGPPGTGKTLLAKAVAGE----AGVPFFSIS 120 (495)
T ss_pred CCCc--EEEECCCCCCHHHHHHHHHHH----cCCCeeecc
Confidence 3445 899999999999999988754 355666554
No 444
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=96.69 E-value=0.044 Score=59.14 Aligned_cols=34 Identities=18% Similarity=0.456 Sum_probs=26.9
Q ss_pred cccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 204 LDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 204 LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
|+.+.--+++|+.+.|.|++|+|||||+.-++--
T Consensus 468 l~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl 501 (659)
T TIGR00954 468 IESLSFEVPSGNHLLICGPNGCGKSSLFRILGEL 501 (659)
T ss_pred eecceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4444334789999999999999999998777654
No 445
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=96.69 E-value=0.014 Score=52.46 Aligned_cols=109 Identities=19% Similarity=0.272 Sum_probs=72.7
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccc------ccCCCCcchHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKL------RTGRLSSDDWPRIND 289 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i------~~g~l~~~~~~~~~~ 289 (452)
+++=.|--|+||||...+++..+|. .|++|+.+.++..-+ -+-...|...+-+ .+|.. ++.+
T Consensus 5 IVvTSGKGGVGKTTttAnig~aLA~-~GkKv~liD~DiGLR-----NLDlimGlE~RiVYd~vdVi~g~~------~l~Q 72 (272)
T COG2894 5 IVVTSGKGGVGKTTTTANIGTALAQ-LGKKVVLIDFDIGLR-----NLDLIMGLENRIVYDLVDVIEGEA------TLNQ 72 (272)
T ss_pred EEEecCCCCcCccchhHHHHHHHHH-cCCeEEEEecCcCch-----hhhhhhcccceeeeeehhhhcCcc------chhh
Confidence 3455689999999999999999986 799999999987643 3333334433222 22333 2333
Q ss_pred HHHHH-hCCCeEEEc------CCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhc
Q psy2891 290 SIKKI-NKSQLYIDE------TPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMS 338 (452)
Q Consensus 290 a~~~l-~~~~l~i~~------~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~ 338 (452)
|.-+= +..++++.+ ...+|.+.+...+..++. . +.+.|++|+-.-+.
T Consensus 73 ALIkDKr~~nL~lLPAsQtrdKdalt~E~v~~vv~eL~~-~-~fDyIi~DsPAGIE 126 (272)
T COG2894 73 ALIKDKRLENLFLLPASQTRDKDALTPEGVKKVVNELKA-M-DFDYIIIDSPAGIE 126 (272)
T ss_pred HhhccccCCceEecccccccCcccCCHHHHHHHHHHHHh-c-CCCEEEecCcchHH
Confidence 32211 123677653 346889999999999987 4 49999999954443
No 446
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.69 E-value=0.024 Score=52.71 Aligned_cols=36 Identities=14% Similarity=0.234 Sum_probs=29.6
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++--.
T Consensus 16 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 455554458899999999999999999999887654
No 447
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.68 E-value=0.0076 Score=53.84 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=34.5
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
..+|.+++|.|.||+|||+++..++.... ..|..+++++.+
T Consensus 15 ~~~~~~i~i~G~~GsGKstla~~l~~~l~-~~~~~~~~l~~d 55 (184)
T TIGR00455 15 GHRGVVIWLTGLSGSGKSTIANALEKKLE-SKGYRVYVLDGD 55 (184)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEECCh
Confidence 47789999999999999999999998774 456778888765
No 448
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=96.68 E-value=0.024 Score=51.32 Aligned_cols=137 Identities=20% Similarity=0.156 Sum_probs=66.7
Q ss_pred CcEEEEEeCCCCChhHHHHHH-HHHHHHh---CCCcEEEEeCCCCHHHHHHHHHH----Hh--CCCCccccccCCCCcch
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNI-GEHIAIE---NKLPVAIFSMEMSGIQLAMRMLG----SV--GKLDQHKLRTGRLSSDD 283 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~i-a~~~a~~---~g~~vl~~s~E~~~~~i~~R~~a----~~--~~i~~~~i~~g~l~~~~ 283 (452)
|.-+++.+++|+|||...+-. ...+... .+.+|+|++-. .+++..+.. .. .++....+. |..+..+
T Consensus 36 ~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~---~~L~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 111 (203)
T cd00268 36 GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPT---RELALQIAEVARKLGKHTNLKVVVIY-GGTSIDK 111 (203)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCC---HHHHHHHHHHHHHHhccCCceEEEEE-CCCCHHH
Confidence 566899999999999664333 3333322 34568888632 333333222 11 122222222 2222211
Q ss_pred HHHHHHHHHHHh-CCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHH
Q psy2891 284 WPRINDSIKKIN-KSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAK 362 (452)
Q Consensus 284 ~~~~~~a~~~l~-~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~ 362 (452)
. ...+. +.++.+. |.+.+...++.-.....+++++|||..+.+... .....+..+.+.+.
T Consensus 112 ~------~~~~~~~~~iiv~-----T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~----~~~~~~~~~~~~l~---- 172 (203)
T cd00268 112 Q------IRKLKRGPHIVVA-----TPGRLLDLLERGKLDLSKVKYLVLDEADRMLDM----GFEDQIREILKLLP---- 172 (203)
T ss_pred H------HHHhcCCCCEEEE-----ChHHHHHHHHcCCCChhhCCEEEEeChHHhhcc----ChHHHHHHHHHhCC----
Confidence 1 12232 3456664 233444433322111124899999999987632 22223333333322
Q ss_pred HhCCcEEEEecC
Q psy2891 363 EINCPILALSQL 374 (452)
Q Consensus 363 ~~~i~vi~l~ql 374 (452)
.++.+++++..
T Consensus 173 -~~~~~~~~SAT 183 (203)
T cd00268 173 -KDRQTLLFSAT 183 (203)
T ss_pred -cccEEEEEecc
Confidence 26667776654
No 449
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.68 E-value=0.016 Score=51.11 Aligned_cols=36 Identities=17% Similarity=0.345 Sum_probs=29.2
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 17 ~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 355554458999999999999999999998877654
No 450
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.67 E-value=0.0031 Score=46.50 Aligned_cols=32 Identities=19% Similarity=0.410 Sum_probs=26.7
Q ss_pred EEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 217 IIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 217 ~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
+.|+|+||+|||+++..++... .+.++.+++.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l---~~~~~~~i~~ 33 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL---GGRSVVVLDE 33 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh---cCCCEEEEeE
Confidence 6789999999999999999877 3567777754
No 451
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=96.67 E-value=0.012 Score=59.27 Aligned_cols=55 Identities=18% Similarity=0.204 Sum_probs=42.4
Q ss_pred ccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC
Q psy2891 196 GISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM 253 (452)
Q Consensus 196 ~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~ 253 (452)
.+.||+..+|.+ -.+.+|+.+.|.|++|+|||+++..++.+. +.+..++.+..|.
T Consensus 139 ~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~--~~~~gvI~~iGer 193 (432)
T PRK06793 139 VFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNA--KADINVISLVGER 193 (432)
T ss_pred ccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccC--CCCeEEEEeCCCC
Confidence 577999999986 468999999999999999999988887765 2334455444444
No 452
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.67 E-value=0.014 Score=54.02 Aligned_cols=36 Identities=19% Similarity=0.396 Sum_probs=29.7
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-..
T Consensus 29 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 466654458999999999999999999998777543
No 453
>PRK13695 putative NTPase; Provisional
Probab=96.67 E-value=0.0076 Score=53.31 Aligned_cols=33 Identities=33% Similarity=0.608 Sum_probs=25.6
Q ss_pred EEEEeCCCCChhHHHHHHHHHHHHhCCCcEE-EEe
Q psy2891 217 IIVAGRPSMGKTAFSLNIGEHIAIENKLPVA-IFS 250 (452)
Q Consensus 217 ~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl-~~s 250 (452)
+.|.|+||+|||||+..++.... ..|.++. |++
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l~-~~G~~~~g~~~ 36 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELLK-EEGYKVGGFYT 36 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEEc
Confidence 68899999999999998887654 3566654 554
No 454
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.67 E-value=0.014 Score=56.96 Aligned_cols=41 Identities=29% Similarity=0.466 Sum_probs=35.8
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGI 256 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~ 256 (452)
-++.|.|+||+|||||+-.++..+. ..|.+|.+++.+.+..
T Consensus 57 ~~igi~G~~GaGKSTl~~~l~~~l~-~~g~~v~vi~~Dp~s~ 97 (332)
T PRK09435 57 LRIGITGVPGVGKSTFIEALGMHLI-EQGHKVAVLAVDPSST 97 (332)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEEeCCCcc
Confidence 4899999999999999999998885 4689999999987644
No 455
>COG1084 Predicted GTPase [General function prediction only]
Probab=96.66 E-value=0.081 Score=50.65 Aligned_cols=95 Identities=18% Similarity=0.257 Sum_probs=51.5
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHH-------HhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCC--cchHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIA-------IENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLS--SDDWPR 286 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a-------~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~--~~~~~~ 286 (452)
.++|||+|++|||+|+..+.-.-- ...+..|.+|-...-..|+ +|.. |-|+ .++++.
T Consensus 170 TivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~Qv----------IDTP----GlLDRPl~ErN~ 235 (346)
T COG1084 170 TIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQV----------IDTP----GLLDRPLEERNE 235 (346)
T ss_pred eEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEE----------ecCC----cccCCChHHhcH
Confidence 589999999999999987654210 0134556665443221111 1111 2221 122222
Q ss_pred H----HHHHHHHhCCCeEEEcC---CCCCHHHHHHHHHHHHHHcC
Q psy2891 287 I----NDSIKKINKSQLYIDET---PSLNVIELRANSRRLSRQCG 324 (452)
Q Consensus 287 ~----~~a~~~l~~~~l~i~~~---~~~t~~~i~~~i~~~~~~~~ 324 (452)
+ ..|+..+.+.-+|+.|. .++++++-....+..+..+.
T Consensus 236 IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~ 280 (346)
T COG1084 236 IERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK 280 (346)
T ss_pred HHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC
Confidence 1 23455566666777663 36777776666666666664
No 456
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=96.66 E-value=0.02 Score=68.23 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=30.8
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
..|+.+.-++.+|+++.|.|+.|+||||++.-++-..
T Consensus 1953 ~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll 1989 (2272)
T TIGR01257 1953 PAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDT 1989 (2272)
T ss_pred eEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCC
Confidence 3566665568999999999999999999998877654
No 457
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=96.66 E-value=0.013 Score=61.03 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=28.2
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGE 236 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~ 236 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-
T Consensus 275 il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G 308 (490)
T PRK10938 275 ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG 308 (490)
T ss_pred EEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 3455544578999999999999999999988876
No 458
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.66 E-value=0.0052 Score=53.01 Aligned_cols=103 Identities=20% Similarity=0.205 Sum_probs=57.9
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcch----HHHHH
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDD----WPRIN 288 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~----~~~~~ 288 (452)
+|-++.|+|.||+||||+|..+...+- ..|.+|.++..+ .+... ++.+ -.++.++ ..++.
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~-~~g~~~~~LDgD----~lR~~-------l~~d----l~fs~~dR~e~~rr~~ 64 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLF-ARGIKVYLLDGD----NLRHG-------LNAD----LGFSKEDREENIRRIA 64 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHH-HTTS-EEEEEHH----HHCTT-------TTTT------SSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEecCc----chhhc-------cCCC----CCCCHHHHHHHHHHHH
Confidence 467899999999999999999999885 578999998765 12111 1110 0133332 23344
Q ss_pred HHHHHHhC-CCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcC
Q psy2891 289 DSIKKINK-SQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDY 333 (452)
Q Consensus 289 ~a~~~l~~-~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~ 333 (452)
.....+.+ ..+.|...-... .+.++.+++...... .--|.||-
T Consensus 65 ~~A~ll~~~G~ivIva~isp~-~~~R~~~R~~~~~~~-f~eVyv~~ 108 (156)
T PF01583_consen 65 EVAKLLADQGIIVIVAFISPY-REDREWARELIPNER-FIEVYVDC 108 (156)
T ss_dssp HHHHHHHHTTSEEEEE----S-HHHHHHHHHHHHTTE-EEEEEEES
T ss_pred HHHHHHHhCCCeEEEeeccCc-hHHHHHHHHhCCcCc-eEEEEeCC
Confidence 44444443 345555432222 567777777665322 55566654
No 459
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.65 E-value=0.0025 Score=56.74 Aligned_cols=37 Identities=22% Similarity=0.427 Sum_probs=31.5
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM 253 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~ 253 (452)
++.|+|.||+|||+|+..++.... ..|.+|..++++.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~-~~~~~~~~i~~Dd 37 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR-VNGIGPVVISLDD 37 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEehhh
Confidence 478999999999999999998875 3578899888874
No 460
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.65 E-value=0.02 Score=53.78 Aligned_cols=36 Identities=33% Similarity=0.701 Sum_probs=30.8
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
|++++|.||+||||++..++.... ..|.+|.+++.+
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~-~~~~~v~~i~~D 36 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLS-EKNIDVIILGTD 36 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH-HcCCceEEEccH
Confidence 589999999999999999998875 357888888664
No 461
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.64 E-value=0.018 Score=51.37 Aligned_cols=146 Identities=14% Similarity=0.157 Sum_probs=82.7
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC-----CCCHHHHHHHHHHHhCCCCccccccCC-CCcchHHHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM-----EMSGIQLAMRMLGSVGKLDQHKLRTGR-LSSDDWPRI 287 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~-----E~~~~~i~~R~~a~~~~i~~~~i~~g~-l~~~~~~~~ 287 (452)
+.++.|.+.+|.|||+.|+.++..++ ..|.+|+++-+ +..+.....++ .++.....-.+. +..++...-
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~-g~G~~V~ivQFlKg~~~~GE~~~l~~l----~~v~~~~~g~~~~~~~~~~~e~ 96 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAV-GHGKKVGVVQFIKGAWSTGERNLLEFG----GGVEFHVMGTGFTWETQDRERD 96 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHH-HCCCeEEEEEEecCCCccCHHHHHhcC----CCcEEEECCCCCcccCCCcHHH
Confidence 34899999999999999999999997 58999998743 23333333332 233333222110 000000000
Q ss_pred HHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCc
Q psy2891 288 NDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCP 367 (452)
Q Consensus 288 ~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~ 367 (452)
.....+..+.+++.... +.+++||+|-+.....-+ -- ...++...|+. +--++.
T Consensus 97 ------------------~~~~~~~~~~a~~~l~~-~~ydlvVLDEi~~Al~~g--li---~~eevi~~L~~--rp~~~e 150 (191)
T PRK05986 97 ------------------IAAAREGWEEAKRMLAD-ESYDLVVLDELTYALKYG--YL---DVEEVLEALNA--RPGMQH 150 (191)
T ss_pred ------------------HHHHHHHHHHHHHHHhC-CCCCEEEEehhhHHHHCC--Cc---cHHHHHHHHHc--CCCCCE
Confidence 00112233334444333 359999999998755432 11 12345566653 556778
Q ss_pred EEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEe
Q psy2891 368 ILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIY 408 (452)
Q Consensus 368 vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~ 408 (452)
||++..-. +..+-..||.|--+.
T Consensus 151 vVlTGR~~------------------p~~Lie~ADlVTEm~ 173 (191)
T PRK05986 151 VVITGRGA------------------PRELIEAADLVTEMR 173 (191)
T ss_pred EEEECCCC------------------CHHHHHhCchheecc
Confidence 88875321 234667788887664
No 462
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.64 E-value=0.022 Score=50.60 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=24.3
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
+++|.|+||+||||++..++... | +.++|..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~----~--~~~is~~ 31 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF----G--FTHLSAG 31 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc----C--CeEEECC
Confidence 47899999999999999987643 3 5566653
No 463
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0058 Score=55.44 Aligned_cols=158 Identities=12% Similarity=0.165 Sum_probs=83.0
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHh-CCCcEEEE---eCCCCHHHHHHHHHHH-------hCCCCcccccc--
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE-NKLPVAIF---SMEMSGIQLAMRMLGS-------VGKLDQHKLRT-- 276 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~-~g~~vl~~---s~E~~~~~i~~R~~a~-------~~~i~~~~i~~-- 276 (452)
-+.+|++..|.||.|+||||++.-++-+-..+ ....|+|= -+++++++-+.+=+-. ..|+....+..
T Consensus 26 ~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a 105 (251)
T COG0396 26 TVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAA 105 (251)
T ss_pred eEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHH
Confidence 47899999999999999999999888654211 11223331 2445555433332111 12333222211
Q ss_pred -------CCCCcchHHHHHHHHHHHhCCCeEEEc--CCCCCH-HHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCH
Q psy2891 277 -------GRLSSDDWPRINDSIKKINKSQLYIDE--TPSLNV-IELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENR 346 (452)
Q Consensus 277 -------g~l~~~~~~~~~~a~~~l~~~~l~i~~--~~~~t~-~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~ 346 (452)
..+..+-..++.++.+.+.-.+.+... ..++|= +.=+..+.++..- +|+++|+|-.. ++- .
T Consensus 106 ~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~l--ePkl~ILDE~D------SGL-D 176 (251)
T COG0396 106 MNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLL--EPKLAILDEPD------SGL-D 176 (251)
T ss_pred HHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhc--CCCEEEecCCC------cCc-c
Confidence 001122233444444444323323221 123332 2333444444333 59999999842 122 2
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEecCCcc
Q psy2891 347 ATEISEISRNLKGLAKEINCPILALSQLNRS 377 (452)
Q Consensus 347 ~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~ 377 (452)
-.++..+++.+..+..+ +..++++.|-.|-
T Consensus 177 Idalk~V~~~i~~lr~~-~~~~liITHy~rl 206 (251)
T COG0396 177 IDALKIVAEGINALREE-GRGVLIITHYQRL 206 (251)
T ss_pred HHHHHHHHHHHHHHhcC-CCeEEEEecHHHH
Confidence 34566677777777654 8888888886653
No 464
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.63 E-value=0.011 Score=56.20 Aligned_cols=41 Identities=20% Similarity=0.258 Sum_probs=30.5
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHH
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGI 256 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~ 256 (452)
++.+++|+|++|+||||++..++.... ..+.++ ++.|.+.+
T Consensus 79 ~~GlilisG~tGSGKTT~l~all~~i~-~~~~~i--itiEdp~E 119 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTLYSALSELN-TPEKNI--ITVEDPVE 119 (264)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhhhC-CCCCeE--EEECCCce
Confidence 455999999999999999988877663 233334 56787754
No 465
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.62 E-value=0.014 Score=58.67 Aligned_cols=36 Identities=19% Similarity=0.409 Sum_probs=26.1
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEE
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIF 249 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~ 249 (452)
|+.+..-+++.|+||+|||++|..++... +.+.+.+
T Consensus 161 g~~~p~gvLL~GppGtGKT~lAkaia~~~----~~~~i~v 196 (389)
T PRK03992 161 GIEPPKGVLLYGPPGTGKTLLAKAVAHET----NATFIRV 196 (389)
T ss_pred CCCCCCceEEECCCCCChHHHHHHHHHHh----CCCEEEe
Confidence 34444458999999999999999987754 3444444
No 466
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.62 E-value=0.0041 Score=56.57 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=26.1
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHH
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAI 240 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~ 240 (452)
....|++++|.|++|+|||+++..++.....
T Consensus 25 ~~~~~~~~~l~G~n~~GKstll~~i~~~~~l 55 (204)
T cd03282 25 TRGSSRFHIITGPNMSGKSTYLKQIALLAIM 55 (204)
T ss_pred eeCCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4677899999999999999999988765543
No 467
>PRK07667 uridine kinase; Provisional
Probab=96.62 E-value=0.0035 Score=56.52 Aligned_cols=39 Identities=26% Similarity=0.471 Sum_probs=34.1
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS 254 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~ 254 (452)
-++.|+|+||+|||||+..++..+. ..|.+|..++++.-
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~-~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMK-QEGIPFHIFHIDDY 56 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH-hCCCcEEEEEcCcc
Confidence 4889999999999999999998885 46889999999864
No 468
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=96.61 E-value=0.049 Score=55.61 Aligned_cols=39 Identities=21% Similarity=0.387 Sum_probs=32.9
Q ss_pred CccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 200 GFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 200 g~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
|.+.|+.+.--+.+|+++.+.|..|+|||||+.-++--.
T Consensus 20 gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~ 58 (500)
T COG1129 20 GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVY 58 (500)
T ss_pred CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcc
Confidence 567788775569999999999999999999998777544
No 469
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=96.61 E-value=0.015 Score=60.56 Aligned_cols=34 Identities=15% Similarity=0.235 Sum_probs=27.9
Q ss_pred cccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 204 LDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 204 LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
|+.+.--+.+|+++.|.|++|+|||||+.-++-.
T Consensus 264 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 297 (491)
T PRK10982 264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGI 297 (491)
T ss_pred cceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCC
Confidence 5555345899999999999999999999877743
No 470
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=96.61 E-value=0.017 Score=50.29 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=34.6
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRML 263 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~ 263 (452)
+++|.|+.|+|||+|...++... .+.++.++..|.....+-...+
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~---~~~~~~~i~~~~G~~~~d~~~~ 46 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQ---HGRKIAVIENEFGEVGIDNQLV 46 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcc---cCCcEEEEecCCCccchhHHHH
Confidence 68999999999999999887653 4788998888876555444443
No 471
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.60 E-value=0.015 Score=55.11 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=22.0
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIA 239 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a 239 (452)
.-++|.|+||+|||||+..++....
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 4689999999999999999987764
No 472
>PTZ00293 thymidine kinase; Provisional
Probab=96.60 E-value=0.014 Score=52.95 Aligned_cols=136 Identities=13% Similarity=0.155 Sum_probs=78.1
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHH
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSI 291 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~ 291 (452)
..|.+.+|.||-++|||+-+++.+.+... .|.+|+.|..-.+.+.-....+....|+...
T Consensus 2 ~~G~i~vi~GpMfSGKTteLLr~i~~y~~-ag~kv~~~kp~~DtR~~~~~~I~Sh~g~~~~------------------- 61 (211)
T PTZ00293 2 YRGTISVIIGPMFSGKTTELMRLVKRFTY-SEKKCVVIKYSKDTRYSDEQNISSHDKQMLK------------------- 61 (211)
T ss_pred CceEEEEEECCCCChHHHHHHHHHHHHHH-cCCceEEEEecccccCCCCCcEEecCCCcce-------------------
Confidence 35889999999999999988888777754 6888988866544221000000000011000
Q ss_pred HHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEE
Q psy2891 292 KKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILAL 371 (452)
Q Consensus 292 ~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l 371 (452)
-+.+ ....++.+.+ . ++++|+||-.|.+.. +.++++. + ...|++||+.
T Consensus 62 ------a~~v-----~~~~e~~~~~------~-~~dvI~IDEaQFf~~----------i~~~~~~---l-~~~g~~Viva 109 (211)
T PTZ00293 62 ------AIKV-----SKLKEVLETA------K-NYDVIAIDEGQFFPD----------LVEFSEA---A-ANLGKIVIVA 109 (211)
T ss_pred ------eEEc-----CCHHHHHHhc------c-CCCEEEEEchHhhHh----------HHHHHHH---H-HHCCCeEEEE
Confidence 0111 1223443322 2 489999999998631 2233322 2 3689998886
Q ss_pred ecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEe
Q psy2891 372 SQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIY 408 (452)
Q Consensus 372 ~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~ 408 (452)
. |...... +| +.++..+-..||.|.-|.
T Consensus 110 G-Ld~Df~~----~~----F~~~~~Ll~~AD~V~kl~ 137 (211)
T PTZ00293 110 A-LDGTFQR----KP----FGQILNLIPLAERVTKLT 137 (211)
T ss_pred e-cCccccc----Cc----CccHHHHHHhhCEEEEcc
Confidence 5 4443322 22 445666777899987664
No 473
>PRK02362 ski2-like helicase; Provisional
Probab=96.60 E-value=0.013 Score=64.00 Aligned_cols=143 Identities=15% Similarity=0.114 Sum_probs=76.9
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC-CCHHHHHHHHHHHh-CCCCccccccCCCCcchHHHH
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME-MSGIQLAMRMLGSV-GKLDQHKLRTGRLSSDDWPRI 287 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E-~~~~~i~~R~~a~~-~~i~~~~i~~g~l~~~~~~~~ 287 (452)
++..|+=+++++|+|+|||..+.-.+.+... .+.+++|+.-- .-..|...++.... .|+.... ..|......
T Consensus 35 ~~~~g~nvlv~APTGSGKTlia~lail~~l~-~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~-~tGd~~~~~---- 108 (737)
T PRK02362 35 GLLDGKNLLAAIPTASGKTLIAELAMLKAIA-RGGKALYIVPLRALASEKFEEFERFEELGVRVGI-STGDYDSRD---- 108 (737)
T ss_pred HHhCCCcEEEECCCcchHHHHHHHHHHHHHh-cCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEE-EeCCcCccc----
Confidence 3556777999999999999887655555543 56789988532 12233333333210 1333222 234332211
Q ss_pred HHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCc
Q psy2891 288 NDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCP 367 (452)
Q Consensus 288 ~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~ 367 (452)
+++....+.|. |++.+...++.......++++||||-++.+... .+...+..+...++.+.. ++.
T Consensus 109 ----~~l~~~~IiV~-----Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~----~rg~~le~il~rl~~~~~--~~q 173 (737)
T PRK02362 109 ----EWLGDNDIIVA-----TSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSA----NRGPTLEVTLAKLRRLNP--DLQ 173 (737)
T ss_pred ----cccCCCCEEEE-----CHHHHHHHHhcChhhhhhcCEEEEECccccCCC----cchHHHHHHHHHHHhcCC--CCc
Confidence 11233455553 455555544421111125899999999988653 233344555566665432 455
Q ss_pred EEEEec
Q psy2891 368 ILALSQ 373 (452)
Q Consensus 368 vi~l~q 373 (452)
+|+++-
T Consensus 174 ii~lSA 179 (737)
T PRK02362 174 VVALSA 179 (737)
T ss_pred EEEEcc
Confidence 666653
No 474
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=96.59 E-value=0.015 Score=51.59 Aligned_cols=138 Identities=19% Similarity=0.181 Sum_probs=76.4
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKK 293 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~ 293 (452)
|.|.++.||-++|||+.+++.+.+... .|.+|++|....+.+.-...+. ...|.....
T Consensus 1 g~l~~i~GpM~sGKS~eLi~~~~~~~~-~~~~v~~~kp~~D~R~~~~~I~-s~~g~~~~~-------------------- 58 (176)
T PF00265_consen 1 GKLEFITGPMFSGKSTELIRRIHRYEI-AGKKVLVFKPAIDTRYGEDKIV-SHDGISLEA-------------------- 58 (176)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHHHHH-TT-EEEEEEESTSCCCCSSEEE-HTTSCEEEE--------------------
T ss_pred CEEEEEECCcCChhHHHHHHHHHHHHh-CCCeEEEEEecccCcCCCCeEE-ecCCCcccc--------------------
Confidence 689999999999999999999998854 7899999987665220000000 001111110
Q ss_pred HhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEec
Q psy2891 294 INKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQ 373 (452)
Q Consensus 294 l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~q 373 (452)
...+..++.++...+ .. ++++|+||-.|.+. .. +. .|-..+.+.|++|++..
T Consensus 59 --------~~~~~~~~~~~~~~~-----~~-~~dvI~IDEaQFf~-~~--------i~----~l~~~~~~~g~~Vi~~G- 110 (176)
T PF00265_consen 59 --------IVDPIDNLFEIIDIL-----EN-DYDVIGIDEAQFFD-EQ--------IV----QLVEILANKGIPVICAG- 110 (176)
T ss_dssp --------ESSEESSGGGGGGGC-----CT-TCSEEEESSGGGST-TT--------HH----HHHHHHHHTT-EEEEEE-
T ss_pred --------cccchhhHHHHHHHh-----cc-CCCEEEEechHhhH-HH--------HH----HHHHHHHhCCCeEEEEe-
Confidence 000111122222211 11 38999999999886 21 22 23344447899988764
Q ss_pred CCcchhhcCCCCCCchhhhhhchhhhhhceeEEEec
Q psy2891 374 LNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYR 409 (452)
Q Consensus 374 l~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r 409 (452)
|+....+. | +.++..+-..||.|.-|..
T Consensus 111 L~~df~~~----~----F~~~~~Ll~~Ad~i~kl~a 138 (176)
T PF00265_consen 111 LDTDFRGE----P----FGGSPRLLPLADKITKLKA 138 (176)
T ss_dssp ESB-TTSS----B-----TTHHHHHHH-SEEEEE-E
T ss_pred eCCccccC----c----chhHHHHHhhCCeEEEecc
Confidence 55443221 2 4446667778999988754
No 475
>KOG0731|consensus
Probab=96.58 E-value=0.013 Score=62.42 Aligned_cols=113 Identities=21% Similarity=0.425 Sum_probs=69.0
Q ss_pred CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHH
Q psy2891 209 SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRIN 288 (452)
Q Consensus 209 gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~ 288 (452)
--+++| ++|.||||+|||.||..+|-.+ | |=|||.. ..+..+++.. +-..
T Consensus 341 AKiPkG--vLL~GPPGTGKTLLAKAiAGEA----g--VPF~svS--GSEFvE~~~g----~~as---------------- 390 (774)
T KOG0731|consen 341 AKIPKG--VLLVGPPGTGKTLLAKAIAGEA----G--VPFFSVS--GSEFVEMFVG----VGAS---------------- 390 (774)
T ss_pred CcCcCc--eEEECCCCCcHHHHHHHHhccc----C--Cceeeec--hHHHHHHhcc----cchH----------------
Confidence 357888 8999999999999998777533 4 5555553 3466666642 1100
Q ss_pred HHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCC-------CCCCHHHHHHHHHHHHHHHH
Q psy2891 289 DSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANS-------RGENRATEISEISRNLKGLA 361 (452)
Q Consensus 289 ~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~-------~~~~~~~~~~~i~~~Lk~lA 361 (452)
.+.++.. .++.. .|.+|+||.|..+.... ....+.+-+.+++-++..+.
T Consensus 391 -------------------rvr~lf~----~ar~~-aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~ 446 (774)
T KOG0731|consen 391 -------------------RVRDLFP----LARKN-APSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE 446 (774)
T ss_pred -------------------HHHHHHH----Hhhcc-CCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence 1122322 22333 48999999999876432 12334444556666666553
Q ss_pred HHhCCcEEEEecCCcc
Q psy2891 362 KEINCPILALSQLNRS 377 (452)
Q Consensus 362 ~~~~i~vi~l~ql~r~ 377 (452)
.+-.||+++-.||-
T Consensus 447 --~~~~vi~~a~tnr~ 460 (774)
T KOG0731|consen 447 --TSKGVIVLAATNRP 460 (774)
T ss_pred --CCCcEEEEeccCCc
Confidence 34557788877774
No 476
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.57 E-value=0.01 Score=54.36 Aligned_cols=60 Identities=20% Similarity=0.219 Sum_probs=45.7
Q ss_pred cCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Q psy2891 199 TGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRM 262 (452)
Q Consensus 199 tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~ 262 (452)
||++.+|-+. .+.+|+=..|.|++|+|||+++.+++.+.. . ..++|+-.....+++.+-.
T Consensus 1 TGir~ID~l~-Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~--~-d~~V~~~iGer~~Ev~~~~ 60 (215)
T PF00006_consen 1 TGIRAIDLLF-PIGRGQRIGIFGGAGVGKTVLLQEIANNQD--A-DVVVYALIGERGREVTEFI 60 (215)
T ss_dssp -SHHHHHHHS-CEETTSEEEEEESTTSSHHHHHHHHHHHCT--T-TEEEEEEESECHHHHHHHH
T ss_pred CCCceecccc-ccccCCEEEEEcCcccccchhhHHHHhccc--c-cceeeeeccccchhHHHHH
Confidence 6888888763 578899999999999999999999999873 2 3356766665666655444
No 477
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=96.56 E-value=0.063 Score=49.85 Aligned_cols=40 Identities=13% Similarity=0.178 Sum_probs=33.8
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGI 256 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~ 256 (452)
..+++|..|+|||+++.++|..++. .|.+|+.++.+-...
T Consensus 5 ~~i~~~KGGvGKSt~a~~la~~l~~-~g~~vl~iD~D~~n~ 44 (241)
T PRK13886 5 HMVLQGKGGVGKSFIAATIAQYKAS-KGQKPLCIDTDPVNA 44 (241)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHh-CCCCEEEEECCCCCc
Confidence 4566799999999999999999874 789999999985543
No 478
>PRK00254 ski2-like helicase; Provisional
Probab=96.56 E-value=0.022 Score=62.15 Aligned_cols=114 Identities=17% Similarity=0.136 Sum_probs=61.6
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHh-----CCCCccccccCCCCcchH
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSV-----GKLDQHKLRTGRLSSDDW 284 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~-----~~i~~~~i~~g~l~~~~~ 284 (452)
++..|+=+++++|+|+|||..+.-.+.+.....+.+++|+.- ...++....... .|+.... ..|..+...
T Consensus 35 ~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P---~~aLa~q~~~~~~~~~~~g~~v~~-~~Gd~~~~~- 109 (720)
T PRK00254 35 GVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVP---LKALAEEKYREFKDWEKLGLRVAM-TTGDYDSTD- 109 (720)
T ss_pred HHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeC---hHHHHHHHHHHHHHHhhcCCEEEE-EeCCCCCch-
Confidence 456677899999999999987744444433445778999853 333333222111 1332221 234443211
Q ss_pred HHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccC
Q psy2891 285 PRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSAN 340 (452)
Q Consensus 285 ~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~ 340 (452)
.++.+..+.|. |++.+...++.-.....++++||||-++.+...
T Consensus 110 -------~~~~~~~IiV~-----Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~ 153 (720)
T PRK00254 110 -------EWLGKYDIIIA-----TAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSY 153 (720)
T ss_pred -------hhhccCCEEEE-----cHHHHHHHHhCCchhhhcCCEEEEcCcCccCCc
Confidence 12333455553 344444443311111115899999999988653
No 479
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.55 E-value=0.027 Score=60.16 Aligned_cols=129 Identities=18% Similarity=0.219 Sum_probs=74.8
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCH---HHHHHHHHHHhCCCCccccccCCCCcchHHHHH
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSG---IQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRIN 288 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~---~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~ 288 (452)
..+.+++|.+|.|.||||++.|++... ..|..|.++|++.+. .....++++.+...- ..+.++
T Consensus 35 ~~~RL~li~APAGfGKttl~aq~~~~~--~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~------p~~~~~------ 100 (894)
T COG2909 35 NDYRLILISAPAGFGKTTLLAQWRELA--ADGAAVAWLSLDESDNDPARFLSYLIAALQQAT------PTLGDE------ 100 (894)
T ss_pred CCceEEEEeCCCCCcHHHHHHHHHHhc--CcccceeEeecCCccCCHHHHHHHHHHHHHHhC------ccccHH------
Confidence 345699999999999999999999833 367899999998654 456667766443211 112111
Q ss_pred HHHHHHhCCCeEEEcCCCCCHHHHHHH-HHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCc
Q psy2891 289 DSIKKINKSQLYIDETPSLNVIELRAN-SRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCP 367 (452)
Q Consensus 289 ~a~~~l~~~~l~i~~~~~~t~~~i~~~-i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~ 367 (452)
...+.+... ..++..+.+. +..+..-++ |=++|+|.++++..+. +...++.|-+-+= .|+.
T Consensus 101 --a~~l~q~~~------~~~l~~l~~~L~~Ela~~~~-pl~LVlDDyHli~~~~--------l~~~l~fLl~~~P-~~l~ 162 (894)
T COG2909 101 --AQTLLQKHQ------YVSLESLLSSLLNELASYEG-PLYLVLDDYHLISDPA--------LHEALRFLLKHAP-ENLT 162 (894)
T ss_pred --HHHHHHhcc------cccHHHHHHHHHHHHHhhcC-ceEEEeccccccCccc--------HHHHHHHHHHhCC-CCeE
Confidence 112222111 1223333332 222333344 8899999999988653 2233334332221 3666
Q ss_pred EEEEe
Q psy2891 368 ILALS 372 (452)
Q Consensus 368 vi~l~ 372 (452)
.|+++
T Consensus 163 lvv~S 167 (894)
T COG2909 163 LVVTS 167 (894)
T ss_pred EEEEe
Confidence 66665
No 480
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.54 E-value=0.002 Score=51.83 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=27.2
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHH
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIG 235 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia 235 (452)
..|+.+.-.+.+|+.+.|.|++|+|||+++.-++
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 3455543357889999999999999999998765
No 481
>PRK10263 DNA translocase FtsK; Provisional
Probab=96.54 E-value=0.0091 Score=66.77 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=34.3
Q ss_pred cEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCC
Q psy2891 327 GVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLN 375 (452)
Q Consensus 327 ~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~ 375 (452)
-+||||.+..+.... ...+...+..|-+.++..||++|+..|--
T Consensus 1142 IVVIIDE~AdLm~~~-----~kevE~lI~rLAqkGRAaGIHLILATQRP 1185 (1355)
T PRK10263 1142 IVVLVDEFADLMMTV-----GKKVEELIARLAQKARAAGIHLVLATQRP 1185 (1355)
T ss_pred EEEEEcChHHHHhhh-----hHHHHHHHHHHHHHhhhcCeEEEEEecCc
Confidence 489999998776432 12456677888899999999999999964
No 482
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=96.54 E-value=0.019 Score=59.10 Aligned_cols=64 Identities=16% Similarity=0.242 Sum_probs=50.1
Q ss_pred ccccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHH
Q psy2891 194 VTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLA 259 (452)
Q Consensus 194 ~~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~ 259 (452)
...+.||+..+|-++ .+.+|+=..|.|.+|+|||+++++...+.+ ..+..|+|...-....++.
T Consensus 142 ~~pl~TGi~aID~l~-pigrGQr~~I~g~~g~GKt~Lal~~i~~~~-~~dv~~V~~~IGer~rev~ 205 (501)
T TIGR00962 142 HEPLQTGIKAIDAMI-PIGRGQRELIIGDRQTGKTAVAIDTIINQK-DSDVYCVYVAIGQKASTVA 205 (501)
T ss_pred CceeccCCceeeccC-CcccCCEEEeecCCCCCccHHHHHHHHhhc-CCCeEEEEEEccCChHHHH
Confidence 346899999999874 588999999999999999999888776664 3455567877766665544
No 483
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=96.53 E-value=0.046 Score=57.82 Aligned_cols=29 Identities=17% Similarity=0.391 Sum_probs=25.1
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
-+++|+.+.|.|++|+||||++.=++...
T Consensus 364 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 392 (555)
T TIGR01194 364 RIAQGDIVFIVGENGCGKSTLAKLFCGLY 392 (555)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999999988776544
No 484
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=96.53 E-value=0.02 Score=60.36 Aligned_cols=172 Identities=13% Similarity=0.130 Sum_probs=85.0
Q ss_pred cccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEe---CCCCHHHHHHHHHHHhCCCCccc-cccCCC
Q psy2891 204 LDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFS---MEMSGIQLAMRMLGSVGKLDQHK-LRTGRL 279 (452)
Q Consensus 204 LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s---~E~~~~~i~~R~~a~~~~i~~~~-i~~g~l 279 (452)
|+.+.--+++|+.+.|.|++|+|||||+.-++--.-- ....|.+-. .+.+...+..+ ++. ++.+. +.++.+
T Consensus 339 l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~-~~G~i~~~g~~~~~~~~~~~~~~-i~~---v~q~~~lf~~ti 413 (547)
T PRK10522 339 VGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQP-QSGEILLDGKPVTAEQPEDYRKL-FSA---VFTDFHLFDQLL 413 (547)
T ss_pred EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEECCCCCHHHHhhh-eEE---EecChhHHHHhh
Confidence 3443334689999999999999999998766643321 122233311 12233333322 111 11111 111111
Q ss_pred ----CcchHHHHHHHHHHHhCCC-eEEEc----CCCCCHHHHHH--HHHHHHHHcCCccEEEEcCcchhccCCCCCCHHH
Q psy2891 280 ----SSDDWPRINDSIKKINKSQ-LYIDE----TPSLNVIELRA--NSRRLSRQCGKIGVIIIDYLQLMSANSRGENRAT 348 (452)
Q Consensus 280 ----~~~~~~~~~~a~~~l~~~~-l~i~~----~~~~t~~~i~~--~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~ 348 (452)
...+-+.+.++++.+.-.. +...+ ...+|-.+-.. .+|.+.+ +++++++|..+.- -+..
T Consensus 414 ~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~---~~~ililDE~ts~------LD~~- 483 (547)
T PRK10522 414 GPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAE---ERDILLLDEWAAD------QDPH- 483 (547)
T ss_pred ccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhc---CCCEEEEECCCCC------CCHH-
Confidence 0111223444444432111 11111 12456554433 3333322 5999999996431 1221
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecC
Q psy2891 349 EISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRD 410 (452)
Q Consensus 349 ~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~ 410 (452)
.-..+.+.|....++.+.++|+++|-- .....||.++.+...
T Consensus 484 ~~~~i~~~l~~~~~~~~~tvi~itH~~--------------------~~~~~~d~i~~l~~G 525 (547)
T PRK10522 484 FRREFYQVLLPLLQEMGKTIFAISHDD--------------------HYFIHADRLLEMRNG 525 (547)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEEech--------------------HHHHhCCEEEEEECC
Confidence 123555666655555688999998831 123458999988653
No 485
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.53 E-value=0.0034 Score=57.89 Aligned_cols=49 Identities=16% Similarity=0.242 Sum_probs=35.5
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHH-------HhCCCcEEEEeCCCCH-HHHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIA-------IENKLPVAIFSMEMSG-IQLAMRMLG 264 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a-------~~~g~~vl~~s~E~~~-~~i~~R~~a 264 (452)
+++|.||||+|||+++..++..+. ...+.++++.+.-... +.+..|+..
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 899999999999999999998882 2467889988775544 556677654
No 486
>PRK06696 uridine kinase; Validated
Probab=96.51 E-value=0.004 Score=57.54 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=31.3
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM 253 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~ 253 (452)
-++.|+|+||+||||||..++..+. ..|.+|+.++++.
T Consensus 23 ~iI~I~G~sgsGKSTlA~~L~~~l~-~~g~~v~~~~~Dd 60 (223)
T PRK06696 23 LRVAIDGITASGKTTFADELAEEIK-KRGRPVIRASIDD 60 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEecccc
Confidence 3899999999999999999998874 3567787777653
No 487
>CHL00176 ftsH cell division protein; Validated
Probab=96.51 E-value=0.016 Score=61.61 Aligned_cols=35 Identities=26% Similarity=0.486 Sum_probs=27.0
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
.++| +++.|+||+|||+++..+|... +.+.+++++
T Consensus 215 ~p~g--VLL~GPpGTGKT~LAralA~e~----~~p~i~is~ 249 (638)
T CHL00176 215 IPKG--VLLVGPPGTGKTLLAKAIAGEA----EVPFFSISG 249 (638)
T ss_pred CCce--EEEECCCCCCHHHHHHHHHHHh----CCCeeeccH
Confidence 4444 8999999999999999987643 567766654
No 488
>PRK14528 adenylate kinase; Provisional
Probab=96.51 E-value=0.019 Score=51.41 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=19.5
Q ss_pred EEEEEeCCCCChhHHHHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
-++|.|+||+|||+++..++...
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999998887543
No 489
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.51 E-value=0.019 Score=54.77 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=29.9
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+|+.+.|.|++|+|||||+.-++...
T Consensus 19 ~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 456554468999999999999999999998877654
No 490
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.51 E-value=0.011 Score=64.49 Aligned_cols=37 Identities=19% Similarity=0.377 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEe
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFS 250 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s 250 (452)
|+.++.-++|.|+||+|||+++..++... +.+.++++
T Consensus 208 gi~~~~giLL~GppGtGKT~laraia~~~----~~~~i~i~ 244 (733)
T TIGR01243 208 GIEPPKGVLLYGPPGTGKTLLAKAVANEA----GAYFISIN 244 (733)
T ss_pred CCCCCceEEEECCCCCChHHHHHHHHHHh----CCeEEEEe
Confidence 57777889999999999999999887654 45555554
No 491
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=96.51 E-value=0.044 Score=57.58 Aligned_cols=160 Identities=11% Similarity=0.091 Sum_probs=0.0
Q ss_pred cccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCC-------CcEEEEeCC--------CCHHHHHHHHHHHhCC
Q psy2891 204 LDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENK-------LPVAIFSME--------MSGIQLAMRMLGSVGK 268 (452)
Q Consensus 204 LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g-------~~vl~~s~E--------~~~~~i~~R~~a~~~~ 268 (452)
|+.+.--+.+|+++.|.|++|+|||||+.-++-...-..| .++.|+.-+ ++..+....+.
T Consensus 335 l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~----- 409 (530)
T PRK15064 335 FKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWR----- 409 (530)
T ss_pred ecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhc-----
Q ss_pred CCccccccCCCCcchHHHHHHHHHHHhC-CCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHH
Q psy2891 269 LDQHKLRTGRLSSDDWPRINDSIKKINK-SQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRA 347 (452)
Q Consensus 269 i~~~~i~~g~l~~~~~~~~~~a~~~l~~-~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~ 347 (452)
.......++....+.+.- ....-.....+|-.+-....-...-..+ ++++++|. +..+-+.
T Consensus 410 ----------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~-p~lllLDE------Pt~~LD~- 471 (530)
T PRK15064 410 ----------QEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQK-PNVLVMDE------PTNHMDM- 471 (530)
T ss_pred ----------cCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcC-CCEEEEcC------CCCCCCH-
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEec
Q psy2891 348 TEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYR 409 (452)
Q Consensus 348 ~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r 409 (452)
.....|..+-++++.+||+++|-.. .+.+.||.++.++.
T Consensus 472 ----~~~~~l~~~l~~~~~tvi~vsHd~~-------------------~~~~~~d~i~~l~~ 510 (530)
T PRK15064 472 ----ESIESLNMALEKYEGTLIFVSHDRE-------------------FVSSLATRIIEITP 510 (530)
T ss_pred ----HHHHHHHHHHHHCCCEEEEEeCCHH-------------------HHHHhCCEEEEEEC
No 492
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.50 E-value=0.024 Score=57.48 Aligned_cols=29 Identities=28% Similarity=0.563 Sum_probs=25.0
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
|+.++.-++|.|+||+|||+++..+|...
T Consensus 213 gi~~p~gVLL~GPPGTGKT~LAraIA~el 241 (438)
T PTZ00361 213 GIKPPKGVILYGPPGTGKTLLAKAVANET 241 (438)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 56677779999999999999999988754
No 493
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.50 E-value=0.011 Score=54.21 Aligned_cols=25 Identities=12% Similarity=0.344 Sum_probs=22.3
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIA 239 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a 239 (452)
++++|.|++|+|||+|+..++....
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~ 55 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIAL 55 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHH
Confidence 7999999999999999999986543
No 494
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.49 E-value=0.014 Score=53.73 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=26.0
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.+.+|++++|.|++|+|||+|+..++...
T Consensus 27 ~~~~g~~~~itG~N~~GKStll~~i~~~~ 55 (222)
T cd03287 27 SAEGGYCQIITGPNMGGKSSYIRQVALIT 55 (222)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999998854
No 495
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=96.49 E-value=0.041 Score=59.08 Aligned_cols=35 Identities=31% Similarity=0.469 Sum_probs=28.6
Q ss_pred cccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 204 LDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 204 LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
|+.+.--+.+|+.+.|.|++|+|||||+.-++-..
T Consensus 328 l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~ 362 (638)
T PRK10636 328 LDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGEL 362 (638)
T ss_pred eccceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44443457899999999999999999999888643
No 496
>PRK09694 helicase Cas3; Provisional
Probab=96.49 E-value=0.065 Score=59.05 Aligned_cols=50 Identities=14% Similarity=0.086 Sum_probs=36.1
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCC-CcEEEEeCCC-CHHHHHHHHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENK-LPVAIFSMEM-SGIQLAMRML 263 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g-~~vl~~s~E~-~~~~i~~R~~ 263 (452)
+.+++|.|++|+|||..++..+..++...+ .+++|..-.| +..++..|+.
T Consensus 301 pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~ 352 (878)
T PRK09694 301 PGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLE 352 (878)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHH
Confidence 459999999999999999998887654333 3555554444 3466777764
No 497
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.48 E-value=0.0041 Score=61.54 Aligned_cols=45 Identities=16% Similarity=0.188 Sum_probs=32.8
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHH
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGI 256 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~ 256 (452)
.+|.+++|+|++|+||||++..++.......+...-.++.|.+.+
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE 176 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIE 176 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCce
Confidence 378899999999999999998888776432222223466787765
No 498
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.48 E-value=0.017 Score=60.77 Aligned_cols=152 Identities=15% Similarity=0.200 Sum_probs=75.9
Q ss_pred cccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccc------ccc-
Q psy2891 204 LDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHK------LRT- 276 (452)
Q Consensus 204 LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~------i~~- 276 (452)
|+.+.--+++|+.+.|.|++|+||||++.-++.-..- ...-+++... +-.++...+....+-++.+. +++
T Consensus 351 L~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p--~~G~I~i~g~-~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eN 427 (529)
T TIGR02868 351 LDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDP--LQGEVTLDGV-SVSSLQDELRRRISVFAQDAHLFDTTVRDN 427 (529)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCE-EhhhHHHHHHhheEEEccCcccccccHHHH
Confidence 4444334789999999999999999998766544322 2223334332 22233111111112222211 111
Q ss_pred ---C--CCCcchHHHHHHHHHH------HhCCCe----EEEc-CCCCCHHHHH--HHHHHHHHHcCCccEEEEcCcchhc
Q psy2891 277 ---G--RLSSDDWPRINDSIKK------INKSQL----YIDE-TPSLNVIELR--ANSRRLSRQCGKIGVIIIDYLQLMS 338 (452)
Q Consensus 277 ---g--~l~~~~~~~~~~a~~~------l~~~~l----~i~~-~~~~t~~~i~--~~i~~~~~~~~~~~~vvID~l~~i~ 338 (452)
| ..++++ +.++.+. +...|- .+-+ ...+|-.+-. +.+|.+.+ +++++++|..+.-
T Consensus 428 I~~g~~~~~~e~---i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~---~~~iliLDE~TSa- 500 (529)
T TIGR02868 428 LRLGRPDATDEE---LWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLA---DAPILLLDEPTEH- 500 (529)
T ss_pred HhccCCCCCHHH---HHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhc---CCCEEEEeCCccc-
Confidence 1 234443 3333332 222221 1222 1245555443 33444432 5999999986431
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEec
Q psy2891 339 ANSRGENRATEISEISRNLKGLAKEINCPILALSQ 373 (452)
Q Consensus 339 ~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~q 373 (452)
-+. ..-..+.+.|+.+. .+.++|+++|
T Consensus 501 -----LD~-~te~~I~~~l~~~~--~~~TvIiItH 527 (529)
T TIGR02868 501 -----LDA-GTESELLEDLLAAL--SGKTVVVITH 527 (529)
T ss_pred -----CCH-HHHHHHHHHHHHhc--CCCEEEEEec
Confidence 111 12235667777653 4688888887
No 499
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=96.48 E-value=0.025 Score=57.49 Aligned_cols=64 Identities=16% Similarity=0.241 Sum_probs=50.0
Q ss_pred ccccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHH
Q psy2891 194 VTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLA 259 (452)
Q Consensus 194 ~~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~ 259 (452)
...+.||+..+|-++ .+-+|+=..|.|.+|+|||++|++...+.. ..+..|+|...-....++.
T Consensus 122 ~epl~TGI~aID~l~-pigrGQR~~I~g~~g~GKt~Lal~~I~~q~-~~dv~cV~~~IGer~rev~ 185 (485)
T CHL00059 122 YEPLQTGLIAIDSMI-PIGRGQRELIIGDRQTGKTAVATDTILNQK-GQNVICVYVAIGQKASSVA 185 (485)
T ss_pred CcccccCceeecccc-ccccCCEEEeecCCCCCHHHHHHHHHHhcc-cCCeEEEEEEecCCchHHH
Confidence 346999999999974 588999999999999999999988777664 3455667777665555533
No 500
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.48 E-value=0.024 Score=57.23 Aligned_cols=62 Identities=11% Similarity=0.102 Sum_probs=45.4
Q ss_pred ccccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHH
Q psy2891 194 VTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLA 259 (452)
Q Consensus 194 ~~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~ 259 (452)
...+.||+..+|-++ -+.+|+.+.|.|++|+|||+|+.+++.... .. .++|...-+..+++.
T Consensus 139 ~~~l~TGir~ID~l~-~i~~Gqri~I~G~sG~GKTtLL~~I~~~~~--~d-~~v~~~iGER~rEv~ 200 (442)
T PRK08927 139 GEPLDLGVRALNTFL-TCCRGQRMGIFAGSGVGKSVLLSMLARNAD--AD-VSVIGLIGERGREVQ 200 (442)
T ss_pred ccccccceEEEeeee-EEcCCCEEEEECCCCCCHHHHHHHHHhccC--CC-EEEEEEEecCcHHHH
Confidence 346999999999875 489999999999999999999887775542 22 344544444444443
Done!