Query psy2891
Match_columns 452
No_of_seqs 293 out of 2114
Neff 9.0
Searched_HMMs 29240
Date Fri Aug 16 20:16:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2891.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2891hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bgw_A DNAB-like replicative h 100.0 2E-83 6.9E-88 649.8 43.6 423 13-452 9-437 (444)
2 2q6t_A DNAB replication FORK h 100.0 2.5E-81 8.4E-86 638.1 49.2 433 13-452 4-440 (444)
3 2r6a_A DNAB helicase, replicat 100.0 1.5E-78 5E-83 619.4 49.8 433 13-452 8-441 (454)
4 4a1f_A DNAB helicase, replicat 100.0 1.3E-61 4.6E-66 469.7 19.6 280 169-452 3-317 (338)
5 3bh0_A DNAB-like replicative h 100.0 1.6E-56 5.6E-61 435.1 29.5 303 140-452 2-308 (315)
6 1q57_A DNA primase/helicase; d 100.0 5.6E-44 1.9E-48 369.2 25.3 297 139-451 172-481 (503)
7 1cr0_A DNA primase/helicase; R 100.0 2.9E-36 9.8E-41 290.8 23.3 264 178-452 2-275 (296)
8 2zts_A Putative uncharacterize 100.0 2.8E-32 9.6E-37 255.8 17.0 226 193-442 8-235 (251)
9 2r5u_A Replicative DNA helicas 100.0 3.1E-31 1.1E-35 239.0 17.6 172 13-186 25-197 (200)
10 1xp8_A RECA protein, recombina 100.0 7.1E-28 2.4E-32 236.7 19.3 220 193-450 51-288 (366)
11 3cmw_A Protein RECA, recombina 100.0 9.5E-28 3.2E-32 270.7 19.2 232 171-438 680-930 (1706)
12 1u94_A RECA protein, recombina 99.9 8.2E-26 2.8E-30 221.4 23.6 212 193-442 40-266 (356)
13 3cmu_A Protein RECA, recombina 99.9 1.5E-26 5E-31 263.3 18.6 240 172-449 332-595 (2050)
14 3gxv_A Replicative DNA helicas 99.9 3.8E-27 1.3E-31 194.7 8.6 119 12-135 4-122 (123)
15 2i1q_A DNA repair and recombin 99.9 4.5E-26 1.5E-30 222.0 16.7 213 193-443 76-316 (322)
16 2z43_A DNA repair and recombin 99.9 1.6E-25 5.5E-30 218.0 17.7 212 193-443 85-315 (324)
17 3cmw_A Protein RECA, recombina 99.9 1.8E-25 6E-30 252.4 20.5 227 173-437 333-580 (1706)
18 2dr3_A UPF0273 protein PH0284; 99.9 7E-25 2.4E-29 204.9 21.1 220 195-444 3-228 (247)
19 1v5w_A DMC1, meiotic recombina 99.9 4.7E-25 1.6E-29 216.2 20.2 214 194-443 101-334 (343)
20 2cvh_A DNA repair and recombin 99.9 3.9E-24 1.3E-28 196.3 20.9 206 196-443 1-212 (220)
21 2zr9_A Protein RECA, recombina 99.9 2.5E-23 8.4E-28 203.7 24.7 212 193-442 38-264 (349)
22 1b79_A DNAB helicase; hexamer, 99.9 3.2E-25 1.1E-29 182.2 9.4 105 13-117 15-119 (119)
23 1nlf_A Regulatory protein REPA 99.9 2.4E-23 8.3E-28 198.5 20.3 231 195-450 11-261 (279)
24 3lda_A DNA repair protein RAD5 99.9 2.2E-22 7.5E-27 199.8 18.5 212 194-442 157-387 (400)
25 1n0w_A DNA repair protein RAD5 99.9 1.9E-22 6.6E-27 187.9 17.0 212 194-443 3-234 (243)
26 3hr8_A Protein RECA; alpha and 99.9 9.9E-22 3.4E-26 191.6 20.6 208 194-437 39-258 (356)
27 2w0m_A SSO2452; RECA, SSPF, un 99.9 5.6E-21 1.9E-25 176.6 19.5 215 195-444 3-223 (235)
28 3cmu_A Protein RECA, recombina 99.9 1.8E-21 6.2E-26 221.8 18.6 205 171-411 680-902 (2050)
29 3io5_A Recombination and repai 99.8 1.9E-19 6.5E-24 170.2 17.2 202 194-434 4-226 (333)
30 4a74_A DNA repair and recombin 99.8 4.8E-19 1.6E-23 163.4 16.4 202 193-441 3-223 (231)
31 2r6a_C DNAG primase, helicase 99.8 2.5E-18 8.4E-23 146.8 13.5 126 14-150 2-131 (143)
32 1pzn_A RAD51, DNA repair and r 99.8 1.2E-17 4.2E-22 163.6 16.9 216 194-443 110-343 (349)
33 2ehv_A Hypothetical protein PH 99.7 7.1E-16 2.4E-20 143.9 20.7 226 193-443 8-238 (251)
34 3bs4_A Uncharacterized protein 99.7 5.1E-16 1.7E-20 144.5 17.2 223 196-445 2-246 (260)
35 1tf7_A KAIC; homohexamer, hexa 99.7 1.8E-15 6.1E-20 156.6 17.9 203 193-437 259-465 (525)
36 2vhj_A Ntpase P4, P4; non- hyd 99.4 1.1E-12 3.6E-17 124.8 8.7 124 196-373 105-234 (331)
37 1tf7_A KAIC; homohexamer, hexa 99.2 1.1E-09 3.9E-14 113.0 20.9 201 193-433 17-228 (525)
38 2b8t_A Thymidine kinase; deoxy 98.9 3.4E-09 1.2E-13 96.4 7.5 141 212-408 10-150 (223)
39 2orw_A Thymidine kinase; TMTK, 98.2 8.6E-07 2.9E-11 78.2 4.0 136 213-408 2-137 (184)
40 3ec2_A DNA replication protein 98.2 8.8E-06 3E-10 71.2 9.9 41 212-252 36-76 (180)
41 2r8r_A Sensor protein; KDPD, P 98.0 2.9E-05 1E-09 70.0 11.2 41 212-253 3-44 (228)
42 3kl4_A SRP54, signal recogniti 98.0 0.00035 1.2E-08 69.5 19.7 119 213-335 96-223 (433)
43 2j9r_A Thymidine kinase; TK1, 98.0 1.7E-05 5.8E-10 70.9 9.1 138 211-408 25-162 (214)
44 3dm5_A SRP54, signal recogniti 98.0 0.00075 2.6E-08 67.2 21.8 145 213-375 99-250 (443)
45 1xx6_A Thymidine kinase; NESG, 98.0 1.8E-05 6.3E-10 69.9 8.2 137 211-408 5-142 (191)
46 1w4r_A Thymidine kinase; type 97.9 1.3E-05 4.5E-10 70.5 6.2 131 212-408 18-151 (195)
47 3b9q_A Chloroplast SRP recepto 97.9 0.012 4E-07 55.7 26.4 44 210-254 96-139 (302)
48 3e70_C DPA, signal recognition 97.9 0.0011 3.8E-08 63.6 19.5 144 211-376 126-280 (328)
49 3gfo_A Cobalt import ATP-bindi 97.8 3.1E-05 1.1E-09 72.6 7.9 178 202-410 22-220 (275)
50 3tif_A Uncharacterized ABC tra 97.8 0.00018 6E-09 65.9 12.8 177 202-410 19-221 (235)
51 2kjq_A DNAA-related protein; s 97.8 6.1E-05 2.1E-09 63.8 8.7 40 213-253 35-74 (149)
52 1fnn_A CDC6P, cell division co 97.8 0.0002 7E-09 70.2 13.5 118 216-374 46-168 (389)
53 2og2_A Putative signal recogni 97.8 0.02 6.8E-07 55.5 27.0 43 211-254 154-196 (359)
54 1j8m_F SRP54, signal recogniti 97.8 0.0016 5.4E-08 61.7 18.7 40 214-254 98-137 (297)
55 2xxa_A Signal recognition part 97.8 0.0022 7.6E-08 63.9 20.6 146 214-376 100-252 (433)
56 2ffh_A Protein (FFH); SRP54, s 97.8 0.0026 8.9E-08 63.1 20.7 145 213-375 97-248 (425)
57 3tui_C Methionine import ATP-b 97.7 0.00049 1.7E-08 66.8 14.8 179 202-410 42-240 (366)
58 4g1u_C Hemin import ATP-bindin 97.7 6.3E-05 2.1E-09 70.2 8.3 179 202-410 25-224 (266)
59 3e2i_A Thymidine kinase; Zn-bi 97.7 7.2E-05 2.4E-09 66.8 8.2 138 211-408 25-162 (219)
60 2px0_A Flagellar biosynthesis 97.7 0.00032 1.1E-08 66.5 12.6 90 212-308 103-194 (296)
61 1vma_A Cell division protein F 97.7 0.001 3.5E-08 63.2 15.8 147 211-376 101-261 (306)
62 2v1u_A Cell division control p 97.7 0.00032 1.1E-08 68.6 12.7 123 213-374 43-176 (387)
63 2qby_A CDC6 homolog 1, cell di 97.7 0.00015 5E-09 71.0 9.7 126 212-374 43-172 (386)
64 1g6h_A High-affinity branched- 97.6 0.00037 1.3E-08 64.6 11.5 174 203-409 22-228 (257)
65 2yhs_A FTSY, cell division pro 97.6 0.00093 3.2E-08 67.2 14.8 147 210-376 289-450 (503)
66 1jbk_A CLPB protein; beta barr 97.6 0.00027 9.1E-09 61.5 9.6 37 215-251 44-86 (195)
67 2qby_B CDC6 homolog 3, cell di 97.6 0.00016 5.4E-09 70.9 9.0 52 215-266 46-107 (384)
68 2orv_A Thymidine kinase; TP4A 97.6 0.00035 1.2E-08 63.0 10.3 134 212-408 17-150 (234)
69 3rlf_A Maltose/maltodextrin im 97.6 0.00032 1.1E-08 68.6 10.7 152 201-374 16-193 (381)
70 4gp7_A Metallophosphoesterase; 97.5 0.00081 2.8E-08 58.1 11.7 23 211-233 6-28 (171)
71 2nq2_C Hypothetical ABC transp 97.5 0.00012 4E-09 67.9 6.7 175 203-409 20-204 (253)
72 3bos_A Putative DNA replicatio 97.5 0.00019 6.6E-09 65.1 8.0 39 213-252 51-89 (242)
73 2pcj_A ABC transporter, lipopr 97.5 0.00049 1.7E-08 62.3 10.6 174 203-409 19-214 (224)
74 2olj_A Amino acid ABC transpor 97.5 0.00049 1.7E-08 64.0 10.5 175 203-409 39-234 (263)
75 1w5s_A Origin recognition comp 97.5 0.00066 2.3E-08 67.1 12.2 95 213-339 49-152 (412)
76 1rj9_A FTSY, signal recognitio 97.5 0.0057 1.9E-07 58.0 18.0 40 213-253 101-140 (304)
77 1z47_A CYSA, putative ABC-tran 97.5 0.0005 1.7E-08 66.6 10.7 152 202-375 29-206 (355)
78 3fvq_A Fe(3+) IONS import ATP- 97.5 0.00023 7.7E-09 69.1 8.2 154 201-374 17-198 (359)
79 1b0u_A Histidine permease; ABC 97.5 0.00052 1.8E-08 63.8 10.3 34 203-236 21-54 (262)
80 2it1_A 362AA long hypothetical 97.5 0.0006 2.1E-08 66.3 11.0 152 202-374 17-193 (362)
81 1vpl_A ABC transporter, ATP-bi 97.4 0.00046 1.6E-08 63.9 9.5 35 202-236 29-63 (256)
82 2yz2_A Putative ABC transporte 97.4 0.00022 7.6E-09 66.5 7.3 176 203-409 22-213 (266)
83 1ls1_A Signal recognition part 97.4 0.0061 2.1E-07 57.5 17.2 144 213-376 97-249 (295)
84 1zu4_A FTSY; GTPase, signal re 97.4 0.0011 3.9E-08 63.4 12.1 44 211-255 102-145 (320)
85 2qgz_A Helicase loader, putati 97.4 0.00038 1.3E-08 66.4 8.7 39 214-252 152-190 (308)
86 1g29_1 MALK, maltose transport 97.4 0.0012 4E-08 64.6 11.9 152 202-374 17-199 (372)
87 1ji0_A ABC transporter; ATP bi 97.4 0.00062 2.1E-08 62.4 9.3 177 203-409 21-214 (240)
88 1l8q_A Chromosomal replication 97.4 0.0014 4.7E-08 62.8 12.0 39 213-252 36-74 (324)
89 2p65_A Hypothetical protein PF 97.3 0.00029 9.9E-09 61.1 6.6 37 215-251 44-86 (187)
90 3cio_A ETK, tyrosine-protein k 97.3 0.00031 1.1E-08 66.7 6.8 40 215-255 105-145 (299)
91 2ihy_A ABC transporter, ATP-bi 97.3 0.00038 1.3E-08 65.3 7.2 34 203-236 36-69 (279)
92 2va8_A SSO2462, SKI2-type heli 97.3 0.0021 7.2E-08 68.6 13.9 139 211-374 43-184 (715)
93 2v3c_C SRP54, signal recogniti 97.3 0.00043 1.5E-08 69.1 7.8 38 215-253 100-137 (432)
94 2yyz_A Sugar ABC transporter, 97.3 0.00058 2E-08 66.3 8.3 151 202-374 17-193 (359)
95 3bfv_A CAPA1, CAPB2, membrane 97.3 0.00033 1.1E-08 65.5 6.3 41 215-256 83-124 (271)
96 3h4m_A Proteasome-activating n 97.3 0.0014 4.9E-08 61.3 10.7 38 210-251 47-84 (285)
97 3uk6_A RUVB-like 2; hexameric 97.2 0.0017 6E-08 63.1 11.5 59 209-269 65-129 (368)
98 1g5t_A COB(I)alamin adenosyltr 97.2 0.0019 6.4E-08 56.9 10.2 147 212-409 27-179 (196)
99 3d31_A Sulfate/molybdate ABC t 97.2 0.0007 2.4E-08 65.5 8.2 153 203-374 15-187 (348)
100 4b4t_J 26S protease regulatory 97.2 0.0025 8.7E-08 62.5 12.1 38 210-251 178-215 (405)
101 3cf0_A Transitional endoplasmi 97.2 0.0011 3.9E-08 62.7 9.5 37 210-250 45-81 (301)
102 2j37_W Signal recognition part 97.2 0.0068 2.3E-07 61.5 15.3 117 214-334 101-224 (504)
103 1xwi_A SKD1 protein; VPS4B, AA 97.2 0.0041 1.4E-07 59.5 13.2 41 209-252 40-80 (322)
104 2z4s_A Chromosomal replication 97.2 0.0013 4.5E-08 65.9 9.9 40 214-253 130-170 (440)
105 1sgw_A Putative ABC transporte 97.2 0.0012 3.9E-08 59.4 8.4 151 202-375 23-193 (214)
106 4b4t_L 26S protease subunit RP 97.2 0.0031 1.1E-07 62.7 12.2 38 210-251 211-248 (437)
107 4b4t_K 26S protease regulatory 97.2 0.0027 9.2E-08 63.0 11.8 38 210-251 202-239 (428)
108 2qen_A Walker-type ATPase; unk 97.1 0.0033 1.1E-07 60.3 12.3 129 214-373 31-172 (350)
109 2qi9_C Vitamin B12 import ATP- 97.1 0.00061 2.1E-08 62.8 6.6 174 202-409 14-208 (249)
110 3te6_A Regulatory protein SIR3 97.1 0.0046 1.6E-07 58.9 12.8 55 214-268 45-107 (318)
111 3t15_A Ribulose bisphosphate c 97.1 0.0014 4.6E-08 62.0 9.1 38 210-251 32-69 (293)
112 4b4t_M 26S protease regulatory 97.1 0.0022 7.6E-08 63.7 10.5 38 210-251 211-248 (434)
113 1c9k_A COBU, adenosylcobinamid 97.1 0.00036 1.2E-08 60.7 4.0 43 216-263 1-44 (180)
114 3bk7_A ABC transporter ATP-bin 97.0 0.0044 1.5E-07 64.5 12.7 157 211-408 379-546 (607)
115 4b4t_I 26S protease regulatory 97.0 0.0045 1.5E-07 61.0 11.9 38 210-251 212-249 (437)
116 3ea0_A ATPase, para family; al 97.0 0.0035 1.2E-07 57.0 10.7 39 216-254 7-45 (245)
117 2qz4_A Paraplegin; AAA+, SPG7, 97.0 0.0012 4E-08 60.9 7.3 39 210-252 35-73 (262)
118 2onk_A Molybdate/tungstate ABC 97.0 0.00089 3E-08 61.3 6.2 174 204-410 15-203 (240)
119 2zj8_A DNA helicase, putative 97.0 0.0028 9.7E-08 67.6 10.8 140 211-374 36-178 (720)
120 3ozx_A RNAse L inhibitor; ATP 97.0 0.0019 6.5E-08 66.3 9.0 156 211-409 291-461 (538)
121 3la6_A Tyrosine-protein kinase 97.0 0.0021 7.1E-08 60.5 8.6 41 215-256 94-134 (286)
122 2gxq_A Heat resistant RNA depe 97.0 0.006 2E-07 53.9 11.2 114 215-340 39-159 (207)
123 2ce7_A Cell division protein F 97.0 0.0027 9.2E-08 64.0 9.8 35 211-251 48-82 (476)
124 3qxc_A Dethiobiotin synthetase 96.9 0.016 5.6E-07 52.8 14.1 139 216-377 24-173 (242)
125 2p6r_A Afuhel308 helicase; pro 96.9 0.0053 1.8E-07 65.3 12.4 142 211-374 37-181 (702)
126 1sky_E F1-ATPase, F1-ATP synth 96.9 0.0071 2.4E-07 60.4 12.4 65 194-259 132-196 (473)
127 4dzz_A Plasmid partitioning pr 96.9 0.0058 2E-07 53.9 10.8 38 216-254 4-41 (206)
128 3vfd_A Spastin; ATPase, microt 96.9 0.0081 2.8E-07 59.0 12.5 36 213-252 147-182 (389)
129 3eie_A Vacuolar protein sortin 96.9 0.0059 2E-07 58.4 10.9 38 210-251 47-84 (322)
130 1v43_A Sugar-binding transport 96.8 0.011 3.7E-07 57.6 12.7 132 202-334 25-201 (372)
131 2fna_A Conserved hypothetical 96.8 0.0056 1.9E-07 58.8 10.8 34 215-252 31-64 (357)
132 2yvu_A Probable adenylyl-sulfa 96.8 0.0012 4.2E-08 57.5 5.5 47 203-251 3-49 (186)
133 4b4t_H 26S protease regulatory 96.8 0.0075 2.6E-07 60.1 11.4 38 210-251 239-276 (467)
134 1hyq_A MIND, cell division inh 96.8 0.0084 2.9E-07 55.2 11.2 38 216-254 5-42 (263)
135 3j16_B RLI1P; ribosome recycli 96.8 0.0097 3.3E-07 61.9 12.6 160 209-409 373-543 (608)
136 3d8b_A Fidgetin-like protein 1 96.7 0.011 3.9E-07 57.3 12.1 35 213-251 116-150 (357)
137 2ck3_D ATP synthase subunit be 96.7 0.0095 3.2E-07 59.4 11.5 66 194-260 134-199 (482)
138 2qp9_X Vacuolar protein sortin 96.7 0.0078 2.7E-07 58.4 10.9 37 211-251 81-117 (355)
139 3llm_A ATP-dependent RNA helic 96.7 0.011 3.9E-07 53.5 11.3 53 211-263 73-130 (235)
140 3b9p_A CG5977-PA, isoform A; A 96.7 0.017 5.9E-07 54.1 12.6 35 213-251 53-87 (297)
141 1sxj_A Activator 1 95 kDa subu 96.7 0.0017 5.9E-08 66.4 5.9 38 212-253 75-112 (516)
142 1zp6_A Hypothetical protein AT 96.6 0.0011 3.9E-08 57.9 3.7 39 210-252 5-43 (191)
143 3uie_A Adenylyl-sulfate kinase 96.6 0.0028 9.7E-08 56.0 5.9 40 211-251 22-61 (200)
144 3cf2_A TER ATPase, transitiona 96.5 0.0082 2.8E-07 64.2 10.1 111 210-372 234-347 (806)
145 1lv7_A FTSH; alpha/beta domain 96.5 0.014 4.7E-07 53.6 10.6 31 217-251 48-78 (257)
146 1oxx_K GLCV, glucose, ABC tran 96.5 0.0054 1.8E-07 59.4 8.0 131 203-334 20-200 (353)
147 3zq6_A Putative arsenical pump 96.5 0.0042 1.4E-07 59.5 7.1 39 215-254 15-53 (324)
148 2pez_A Bifunctional 3'-phospho 96.5 0.0034 1.2E-07 54.3 5.9 38 212-250 3-40 (179)
149 2w58_A DNAI, primosome compone 96.5 0.0029 9.9E-08 55.9 5.5 37 215-252 55-91 (202)
150 2v6i_A RNA helicase; membrane, 96.5 0.023 7.9E-07 56.6 12.6 131 213-373 1-132 (431)
151 3c8u_A Fructokinase; YP_612366 96.5 0.0035 1.2E-07 55.8 5.8 41 211-252 19-59 (208)
152 1yrb_A ATP(GTP)binding protein 96.4 0.0034 1.2E-07 57.8 5.9 41 211-253 11-51 (262)
153 3iuy_A Probable ATP-dependent 96.4 0.021 7.3E-07 51.2 11.1 116 214-340 57-182 (228)
154 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.003 1E-07 58.4 5.3 38 213-251 3-40 (260)
155 1kgd_A CASK, peripheral plasma 96.4 0.002 6.8E-08 56.0 3.8 28 210-237 1-28 (180)
156 3fe2_A Probable ATP-dependent 96.4 0.018 6.3E-07 52.3 10.3 115 214-340 66-191 (242)
157 1qvr_A CLPB protein; coiled co 96.4 0.012 4.1E-07 64.1 10.4 108 216-372 193-306 (854)
158 2rhm_A Putative kinase; P-loop 96.4 0.0027 9.2E-08 55.5 4.4 29 210-238 1-29 (193)
159 3end_A Light-independent proto 96.4 0.004 1.4E-07 59.1 5.9 41 213-254 40-80 (307)
160 2zan_A Vacuolar protein sortin 96.3 0.0089 3.1E-07 59.9 8.6 39 211-252 164-202 (444)
161 1m7g_A Adenylylsulfate kinase; 96.3 0.0039 1.3E-07 55.6 5.3 40 211-250 22-61 (211)
162 1ofh_A ATP-dependent HSL prote 96.3 0.021 7.2E-07 53.6 10.7 34 215-252 51-84 (310)
163 3j16_B RLI1P; ribosome recycli 96.3 0.017 5.9E-07 60.0 10.8 26 211-236 100-125 (608)
164 2ius_A DNA translocase FTSK; n 96.3 0.032 1.1E-06 56.5 12.3 44 328-376 300-343 (512)
165 3syl_A Protein CBBX; photosynt 96.3 0.037 1.3E-06 52.1 12.3 38 213-251 66-107 (309)
166 2ck3_A ATP synthase subunit al 96.3 0.023 7.8E-07 57.1 11.0 65 195-260 144-215 (510)
167 2pl3_A Probable ATP-dependent 96.3 0.034 1.2E-06 50.2 11.4 115 214-340 62-186 (236)
168 2woj_A ATPase GET3; tail-ancho 96.3 0.0053 1.8E-07 59.5 6.3 41 214-254 18-59 (354)
169 3b6e_A Interferon-induced heli 96.3 0.034 1.2E-06 49.1 11.2 114 215-339 49-176 (216)
170 2jlq_A Serine protease subunit 96.2 0.032 1.1E-06 55.9 12.2 57 211-271 16-73 (451)
171 3vaa_A Shikimate kinase, SK; s 96.2 0.003 1E-07 55.8 4.1 29 210-238 21-49 (199)
172 3hu3_A Transitional endoplasmi 96.2 0.0055 1.9E-07 62.1 6.3 38 210-251 234-271 (489)
173 2chg_A Replication factor C sm 96.2 0.041 1.4E-06 48.4 11.6 23 217-239 41-63 (226)
174 3u61_B DNA polymerase accessor 96.2 0.023 7.8E-07 54.1 10.4 35 215-253 49-83 (324)
175 3ug7_A Arsenical pump-driving 96.2 0.0053 1.8E-07 59.5 5.9 41 213-254 25-65 (349)
176 1rz3_A Hypothetical protein rb 96.2 0.0067 2.3E-07 53.7 6.0 41 211-252 19-59 (201)
177 1ihu_A Arsenical pump-driving 96.2 0.0058 2E-07 63.6 6.5 41 213-254 7-47 (589)
178 1z6g_A Guanylate kinase; struc 96.2 0.0025 8.6E-08 57.3 3.2 36 203-238 12-47 (218)
179 1yqt_A RNAse L inhibitor; ATP- 96.2 0.03 1E-06 57.4 11.6 27 211-237 309-335 (538)
180 3ice_A Transcription terminati 96.1 0.0068 2.3E-07 58.9 6.2 64 196-260 157-221 (422)
181 3i5x_A ATP-dependent RNA helic 96.1 0.076 2.6E-06 54.6 14.7 148 213-374 110-273 (563)
182 2qe7_A ATP synthase subunit al 96.1 0.024 8.1E-07 56.9 10.1 65 194-260 143-207 (502)
183 3b5x_A Lipid A export ATP-bind 96.1 0.021 7.1E-07 59.3 10.2 35 204-238 359-393 (582)
184 1tue_A Replication protein E1; 96.1 0.0019 6.6E-08 57.1 1.9 37 202-238 46-82 (212)
185 2iut_A DNA translocase FTSK; n 96.1 0.059 2E-06 55.1 13.1 150 211-376 211-389 (574)
186 1vec_A ATP-dependent RNA helic 96.1 0.034 1.2E-06 48.8 10.1 113 215-339 41-160 (206)
187 3tr0_A Guanylate kinase, GMP k 96.1 0.0038 1.3E-07 55.1 3.8 27 211-237 4-30 (205)
188 2woo_A ATPase GET3; tail-ancho 96.0 0.0078 2.7E-07 57.7 6.2 40 214-254 19-58 (329)
189 2j41_A Guanylate kinase; GMP, 96.0 0.004 1.4E-07 55.0 3.8 28 211-238 3-30 (207)
190 3aez_A Pantothenate kinase; tr 96.0 0.0071 2.4E-07 57.5 5.7 43 211-253 87-130 (312)
191 1wp9_A ATP-dependent RNA helic 96.0 0.08 2.7E-06 52.6 13.7 112 216-339 25-139 (494)
192 4eaq_A DTMP kinase, thymidylat 96.0 0.11 3.8E-06 46.8 13.3 42 210-254 22-63 (229)
193 1qde_A EIF4A, translation init 96.0 0.037 1.3E-06 49.4 10.1 114 215-340 52-170 (224)
194 1nks_A Adenylate kinase; therm 96.0 0.0084 2.9E-07 52.1 5.6 34 216-250 3-36 (194)
195 1xjc_A MOBB protein homolog; s 96.0 0.01 3.5E-07 51.0 5.9 38 216-254 6-43 (169)
196 3bk7_A ABC transporter ATP-bin 96.0 0.011 3.6E-07 61.6 7.2 34 203-237 107-140 (607)
197 1t6n_A Probable ATP-dependent 96.0 0.06 2E-06 47.9 11.4 112 216-339 53-172 (220)
198 1g3q_A MIND ATPase, cell divis 96.0 0.0077 2.6E-07 54.5 5.5 38 216-254 5-42 (237)
199 3fwy_A Light-independent proto 95.9 0.0085 2.9E-07 57.0 5.9 41 211-252 45-85 (314)
200 3oaa_A ATP synthase subunit al 95.9 0.04 1.4E-06 55.2 10.7 65 194-260 143-207 (513)
201 3tau_A Guanylate kinase, GMP k 95.9 0.0047 1.6E-07 55.0 3.8 27 212-238 6-32 (208)
202 2eyu_A Twitching motility prot 95.9 0.0083 2.8E-07 55.5 5.4 45 203-249 16-60 (261)
203 3sqw_A ATP-dependent RNA helic 95.9 0.11 3.9E-06 53.6 14.7 148 213-374 59-222 (579)
204 3fgn_A Dethiobiotin synthetase 95.9 0.021 7.1E-07 52.4 8.0 130 216-376 29-168 (251)
205 3iqw_A Tail-anchored protein t 95.9 0.0079 2.7E-07 57.8 5.4 38 215-253 17-54 (334)
206 3ly5_A ATP-dependent RNA helic 95.9 0.053 1.8E-06 49.9 10.9 114 215-340 92-216 (262)
207 1cp2_A CP2, nitrogenase iron p 95.9 0.0083 2.8E-07 55.5 5.4 38 216-254 3-40 (269)
208 3n70_A Transport activator; si 95.9 0.011 3.8E-07 49.2 5.7 34 216-251 26-59 (145)
209 3sr0_A Adenylate kinase; phosp 95.9 0.053 1.8E-06 48.1 10.4 103 216-330 2-108 (206)
210 1kht_A Adenylate kinase; phosp 95.8 0.0089 3E-07 51.9 5.2 37 214-251 3-39 (192)
211 3bor_A Human initiation factor 95.8 0.019 6.6E-07 52.0 7.7 113 215-339 68-187 (237)
212 2ph1_A Nucleotide-binding prot 95.8 0.009 3.1E-07 55.2 5.5 39 216-255 21-59 (262)
213 3q9l_A Septum site-determining 95.8 0.009 3.1E-07 54.8 5.5 37 216-253 5-41 (260)
214 2qor_A Guanylate kinase; phosp 95.8 0.0054 1.9E-07 54.3 3.8 29 210-238 8-36 (204)
215 1np6_A Molybdopterin-guanine d 95.8 0.014 4.8E-07 50.4 6.3 42 212-254 4-45 (174)
216 4f92_B U5 small nuclear ribonu 95.8 0.059 2E-06 62.7 13.3 144 212-374 940-1092(1724)
217 2afh_E Nitrogenase iron protei 95.8 0.0097 3.3E-07 55.8 5.7 38 216-254 4-41 (289)
218 1fx0_B ATP synthase beta chain 95.8 0.01 3.5E-07 59.4 6.1 64 194-258 146-209 (498)
219 4eun_A Thermoresistant glucoki 95.8 0.0063 2.2E-07 53.7 4.1 28 211-238 26-53 (200)
220 1yqt_A RNAse L inhibitor; ATP- 95.8 0.035 1.2E-06 56.9 10.3 33 203-236 37-69 (538)
221 1s96_A Guanylate kinase, GMP k 95.8 0.0053 1.8E-07 55.3 3.6 29 209-237 11-39 (219)
222 3kjh_A CO dehydrogenase/acetyl 95.8 0.0056 1.9E-07 55.8 3.7 36 218-254 4-39 (254)
223 2r9v_A ATP synthase subunit al 95.8 0.025 8.4E-07 56.8 8.5 64 195-260 157-220 (515)
224 1znw_A Guanylate kinase, GMP k 95.8 0.0058 2E-07 54.3 3.7 28 210-237 16-43 (207)
225 1z6t_A APAF-1, apoptotic prote 95.7 0.028 9.5E-07 58.3 9.4 50 213-262 146-199 (591)
226 3io3_A DEHA2D07832P; chaperone 95.7 0.013 4.4E-07 56.6 6.3 40 214-253 18-58 (348)
227 3thx_A DNA mismatch repair pro 95.7 0.049 1.7E-06 59.3 11.4 29 210-238 658-686 (934)
228 3p32_A Probable GTPase RV1496/ 95.7 0.01 3.4E-07 57.6 5.5 41 215-256 80-120 (355)
229 2r2a_A Uncharacterized protein 95.7 0.0077 2.6E-07 53.3 4.2 37 216-252 7-48 (199)
230 3jvv_A Twitching mobility prot 95.7 0.011 3.6E-07 57.4 5.5 37 211-247 120-156 (356)
231 3co5_A Putative two-component 95.7 0.0094 3.2E-07 49.6 4.5 32 216-252 29-60 (143)
232 3tbk_A RIG-I helicase domain; 95.7 0.097 3.3E-06 53.3 13.1 114 215-339 20-141 (555)
233 1sxj_B Activator 1 37 kDa subu 95.7 0.031 1E-06 52.8 8.7 23 217-239 45-67 (323)
234 1htw_A HI0065; nucleotide-bind 95.7 0.0069 2.4E-07 51.5 3.6 29 210-238 29-57 (158)
235 4aby_A DNA repair protein RECN 95.7 0.017 5.9E-07 57.1 7.1 37 199-236 46-82 (415)
236 2wwf_A Thymidilate kinase, put 95.7 0.017 5.7E-07 51.2 6.3 39 211-250 7-45 (212)
237 3ber_A Probable ATP-dependent 95.6 0.072 2.5E-06 48.6 10.7 115 214-340 80-201 (249)
238 3l0o_A Transcription terminati 95.6 0.015 5.1E-07 56.5 6.1 63 196-259 158-221 (427)
239 3fkq_A NTRC-like two-domain pr 95.6 0.0092 3.1E-07 58.3 4.8 36 216-252 146-181 (373)
240 1knq_A Gluconate kinase; ALFA/ 95.6 0.0069 2.4E-07 52.0 3.5 27 212-238 6-32 (175)
241 1nn5_A Similar to deoxythymidy 95.6 0.017 5.9E-07 51.2 6.2 38 212-250 7-44 (215)
242 1qhx_A CPT, protein (chloramph 95.6 0.0084 2.9E-07 51.5 4.0 34 214-251 3-36 (178)
243 2qm8_A GTPase/ATPase; G protei 95.6 0.012 4.1E-07 56.6 5.5 43 210-253 51-93 (337)
244 4a2p_A RIG-I, retinoic acid in 95.6 0.14 4.6E-06 52.3 13.8 113 216-339 24-144 (556)
245 2v9p_A Replication protein E1; 95.6 0.0055 1.9E-07 58.0 2.9 37 202-238 114-150 (305)
246 3cwq_A Para family chromosome 95.6 0.012 4.2E-07 52.3 5.1 37 216-254 3-39 (209)
247 3k9g_A PF-32 protein; ssgcid, 95.5 0.0083 2.8E-07 55.5 4.0 38 216-255 30-67 (267)
248 2oxc_A Probable ATP-dependent 95.5 0.059 2E-06 48.4 9.6 115 214-340 61-181 (230)
249 1hv8_A Putative ATP-dependent 95.5 0.083 2.8E-06 50.6 11.3 113 215-339 45-161 (367)
250 3thx_B DNA mismatch repair pro 95.5 0.079 2.7E-06 57.6 12.1 29 210-238 669-697 (918)
251 2jeo_A Uridine-cytidine kinase 95.5 0.0073 2.5E-07 55.2 3.5 51 202-252 13-67 (245)
252 2axn_A 6-phosphofructo-2-kinas 95.5 0.21 7.1E-06 50.9 14.6 109 213-332 34-152 (520)
253 1lvg_A Guanylate kinase, GMP k 95.5 0.0064 2.2E-07 53.7 2.9 27 212-238 2-28 (198)
254 2xgj_A ATP-dependent RNA helic 95.5 0.068 2.3E-06 59.0 11.6 108 212-340 99-207 (1010)
255 3cm0_A Adenylate kinase; ATP-b 95.4 0.0082 2.8E-07 52.0 3.4 27 212-238 2-28 (186)
256 2oze_A ORF delta'; para, walke 95.4 0.015 5.2E-07 54.6 5.5 39 216-255 36-77 (298)
257 3eiq_A Eukaryotic initiation f 95.4 0.04 1.4E-06 54.0 8.8 114 214-339 77-197 (414)
258 4b3f_X DNA-binding protein smu 95.4 0.016 5.3E-07 61.1 6.0 53 211-264 202-255 (646)
259 1byi_A Dethiobiotin synthase; 95.4 0.017 5.8E-07 51.7 5.5 34 216-250 4-37 (224)
260 2qt1_A Nicotinamide riboside k 95.4 0.0098 3.4E-07 52.7 3.8 38 210-252 17-54 (207)
261 1yks_A Genome polyprotein [con 95.4 0.025 8.5E-07 56.5 7.2 56 211-270 5-61 (440)
262 3zvl_A Bifunctional polynucleo 95.3 0.055 1.9E-06 53.6 9.4 24 213-236 257-280 (416)
263 2a5y_B CED-4; apoptosis; HET: 95.3 0.11 3.8E-06 53.4 12.0 53 214-266 152-211 (549)
264 1ypw_A Transitional endoplasmi 95.3 0.042 1.4E-06 59.2 9.2 38 210-251 234-271 (806)
265 1ly1_A Polynucleotide kinase; 95.3 0.009 3.1E-07 51.3 3.2 32 215-251 3-34 (181)
266 2cbz_A Multidrug resistance-as 95.3 0.0078 2.7E-07 54.9 2.9 36 202-237 19-54 (237)
267 3ney_A 55 kDa erythrocyte memb 95.3 0.011 3.7E-07 52.2 3.6 27 211-237 16-42 (197)
268 1kag_A SKI, shikimate kinase I 95.3 0.0096 3.3E-07 50.9 3.2 25 213-237 3-27 (173)
269 1wcv_1 SOJ, segregation protei 95.3 0.011 3.6E-07 54.5 3.7 39 215-254 7-46 (257)
270 3lw7_A Adenylate kinase relate 95.2 0.013 4.6E-07 49.7 4.1 19 216-234 3-21 (179)
271 1gvn_B Zeta; postsegregational 95.2 0.011 3.7E-07 55.6 3.7 36 212-251 31-66 (287)
272 3kb2_A SPBC2 prophage-derived 95.2 0.012 4.1E-07 50.1 3.7 23 216-238 3-25 (173)
273 3oiy_A Reverse gyrase helicase 95.2 0.031 1E-06 55.1 7.2 114 214-339 36-153 (414)
274 3qf4_A ABC transporter, ATP-bi 95.2 0.069 2.4E-06 55.4 10.1 34 203-236 358-391 (587)
275 2p67_A LAO/AO transport system 95.2 0.025 8.7E-07 54.4 6.4 45 211-256 53-97 (341)
276 2v54_A DTMP kinase, thymidylat 95.2 0.014 4.9E-07 51.3 4.2 37 212-251 2-38 (204)
277 1ihu_A Arsenical pump-driving 95.2 0.015 5.1E-07 60.5 5.0 52 202-254 313-366 (589)
278 2iw3_A Elongation factor 3A; a 95.2 0.077 2.6E-06 57.8 10.6 129 204-334 451-604 (986)
279 2plr_A DTMP kinase, probable t 95.2 0.013 4.5E-07 51.7 3.9 35 213-249 3-37 (213)
280 2xj4_A MIPZ; replication, cell 95.2 0.018 6E-07 54.0 4.9 37 216-253 7-43 (286)
281 1svm_A Large T antigen; AAA+ f 95.2 0.009 3.1E-07 58.3 2.9 34 204-237 159-192 (377)
282 2obl_A ESCN; ATPase, hydrolase 95.2 0.0087 3E-07 57.8 2.8 42 196-238 54-95 (347)
283 3kta_A Chromosome segregation 95.2 0.015 5.2E-07 50.2 4.2 37 200-237 11-49 (182)
284 3gqb_B V-type ATP synthase bet 95.1 0.035 1.2E-06 55.0 7.0 65 194-259 128-202 (464)
285 2bdt_A BH3686; alpha-beta prot 95.1 0.0098 3.3E-07 51.8 2.8 23 214-236 2-24 (189)
286 3asz_A Uridine kinase; cytidin 95.1 0.013 4.3E-07 52.1 3.5 37 212-252 4-40 (211)
287 3lnc_A Guanylate kinase, GMP k 95.1 0.007 2.4E-07 54.7 1.9 27 211-237 24-51 (231)
288 2ze6_A Isopentenyl transferase 95.1 0.014 4.7E-07 53.8 3.8 23 216-238 3-25 (253)
289 2c95_A Adenylate kinase 1; tra 95.1 0.017 5.9E-07 50.3 4.3 27 212-238 7-33 (196)
290 3iij_A Coilin-interacting nucl 95.1 0.016 5.5E-07 49.9 4.0 27 212-238 9-35 (180)
291 3trf_A Shikimate kinase, SK; a 95.0 0.017 5.7E-07 50.0 4.0 25 214-238 5-29 (185)
292 2dpy_A FLII, flagellum-specifi 95.0 0.012 4.2E-07 58.6 3.6 54 196-252 140-193 (438)
293 2fz4_A DNA repair protein RAD2 95.0 0.073 2.5E-06 48.2 8.5 96 215-339 109-206 (237)
294 2ewv_A Twitching motility prot 95.0 0.025 8.6E-07 55.1 5.7 40 211-250 133-172 (372)
295 2p5t_B PEZT; postsegregational 95.0 0.012 4E-07 54.1 3.2 38 211-252 29-66 (253)
296 2ykg_A Probable ATP-dependent 95.0 0.3 1E-05 51.5 14.5 115 214-339 28-150 (696)
297 1tev_A UMP-CMP kinase; ploop, 95.0 0.016 5.3E-07 50.4 3.8 25 214-238 3-27 (196)
298 3b60_A Lipid A export ATP-bind 95.0 0.056 1.9E-06 56.0 8.6 34 204-237 359-392 (582)
299 3pg5_A Uncharacterized protein 95.0 0.012 4.1E-07 57.2 3.3 38 216-254 4-41 (361)
300 2zu0_C Probable ATP-dependent 95.0 0.012 4E-07 54.7 3.1 34 203-236 35-68 (267)
301 1mv5_A LMRA, multidrug resista 95.0 0.01 3.6E-07 54.2 2.7 35 203-237 17-51 (243)
302 1y63_A LMAJ004144AAA protein; 95.0 0.019 6.4E-07 49.9 4.2 27 211-237 7-33 (184)
303 2pze_A Cystic fibrosis transme 94.9 0.0099 3.4E-07 53.8 2.4 36 202-237 22-57 (229)
304 1sq5_A Pantothenate kinase; P- 94.9 0.026 9E-07 53.4 5.4 42 211-252 77-119 (308)
305 1fx0_A ATP synthase alpha chai 94.9 0.022 7.5E-07 57.2 4.9 65 195-261 145-209 (507)
306 3l9o_A ATP-dependent RNA helic 94.9 0.06 2E-06 60.0 9.0 108 211-339 196-304 (1108)
307 2d2e_A SUFC protein; ABC-ATPas 94.9 0.011 3.7E-07 54.4 2.6 34 203-236 18-51 (250)
308 2ixe_A Antigen peptide transpo 94.9 0.011 3.7E-07 55.1 2.6 35 203-237 34-68 (271)
309 2ghi_A Transport protein; mult 94.9 0.011 3.9E-07 54.6 2.7 35 203-237 35-69 (260)
310 2o8b_B DNA mismatch repair pro 94.9 0.097 3.3E-06 57.7 10.5 46 325-376 868-913 (1022)
311 3vr4_D V-type sodium ATPase su 94.9 0.046 1.6E-06 54.2 7.1 63 195-259 133-199 (465)
312 2ff7_A Alpha-hemolysin translo 94.9 0.0095 3.2E-07 54.7 2.0 35 203-237 24-58 (247)
313 1aky_A Adenylate kinase; ATP:A 94.9 0.02 6.8E-07 51.2 4.2 26 213-238 3-28 (220)
314 1xti_A Probable ATP-dependent 94.8 0.18 6E-06 48.8 11.4 114 214-339 45-166 (391)
315 2www_A Methylmalonic aciduria 94.8 0.039 1.3E-06 53.3 6.4 44 212-256 72-115 (349)
316 3qf4_B Uncharacterized ABC tra 94.8 0.065 2.2E-06 55.7 8.5 34 203-236 370-403 (598)
317 4a2q_A RIG-I, retinoic acid in 94.8 0.31 1E-05 52.5 14.1 116 213-339 262-385 (797)
318 2z0h_A DTMP kinase, thymidylat 94.8 0.035 1.2E-06 48.3 5.5 33 216-249 2-34 (197)
319 3lv8_A DTMP kinase, thymidylat 94.8 0.046 1.6E-06 49.6 6.3 50 212-262 25-74 (236)
320 4fcw_A Chaperone protein CLPB; 94.7 0.024 8.3E-07 53.4 4.7 39 213-252 46-84 (311)
321 2vli_A Antibiotic resistance p 94.7 0.016 5.4E-07 50.0 3.1 25 213-237 4-28 (183)
322 3t61_A Gluconokinase; PSI-biol 94.7 0.02 7E-07 50.3 3.8 25 214-238 18-42 (202)
323 3pey_A ATP-dependent RNA helic 94.7 0.1 3.4E-06 50.6 9.2 110 215-339 45-159 (395)
324 2pbr_A DTMP kinase, thymidylat 94.7 0.038 1.3E-06 47.9 5.5 34 216-250 2-35 (195)
325 2qmh_A HPR kinase/phosphorylas 94.7 0.018 6.2E-07 50.6 3.3 25 213-237 33-57 (205)
326 1zd8_A GTP:AMP phosphotransfer 94.7 0.022 7.4E-07 51.3 3.9 27 211-237 4-30 (227)
327 3ez2_A Plasmid partition prote 94.7 0.023 7.9E-07 55.9 4.4 39 216-254 111-154 (398)
328 2z0m_A 337AA long hypothetical 94.7 0.093 3.2E-06 49.6 8.6 111 214-340 31-144 (337)
329 4f92_B U5 small nuclear ribonu 94.6 0.23 7.8E-06 57.9 13.0 156 200-374 76-253 (1724)
330 4ddu_A Reverse gyrase; topoiso 94.6 0.047 1.6E-06 60.9 7.2 114 214-339 93-210 (1104)
331 2yl4_A ATP-binding cassette SU 94.6 0.078 2.7E-06 55.1 8.4 172 204-410 360-557 (595)
332 3umf_A Adenylate kinase; rossm 94.6 0.026 8.8E-07 50.6 4.2 29 210-238 25-53 (217)
333 4edh_A DTMP kinase, thymidylat 94.5 0.044 1.5E-06 48.9 5.6 37 212-249 4-40 (213)
334 2cdn_A Adenylate kinase; phosp 94.5 0.028 9.5E-07 49.4 4.3 26 213-238 19-44 (201)
335 2bbw_A Adenylate kinase 4, AK4 94.5 0.022 7.5E-07 52.0 3.6 26 213-238 26-51 (246)
336 3fho_A ATP-dependent RNA helic 94.5 0.12 4.2E-06 52.4 9.6 113 214-339 158-273 (508)
337 3gd7_A Fusion complex of cysti 94.5 0.02 6.9E-07 56.1 3.5 35 202-236 35-69 (390)
338 1wrb_A DJVLGB; RNA helicase, D 94.5 0.2 6.9E-06 45.5 10.2 115 214-340 60-189 (253)
339 3a00_A Guanylate kinase, GMP k 94.5 0.019 6.4E-07 50.0 3.0 25 214-238 1-25 (186)
340 2x8a_A Nuclear valosin-contain 94.5 0.017 5.7E-07 53.9 2.8 36 210-251 42-77 (274)
341 3a8t_A Adenylate isopentenyltr 94.5 0.022 7.6E-07 54.4 3.6 35 212-252 38-72 (339)
342 1a5t_A Delta prime, HOLB; zinc 94.4 0.078 2.7E-06 50.7 7.5 25 215-239 25-49 (334)
343 2bwj_A Adenylate kinase 5; pho 94.4 0.029 9.9E-07 49.0 4.1 26 213-238 11-36 (199)
344 2bjv_A PSP operon transcriptio 94.4 0.03 1E-06 51.6 4.3 42 216-258 31-72 (265)
345 3nh6_A ATP-binding cassette SU 94.4 0.012 4.1E-07 55.8 1.6 35 202-236 68-102 (306)
346 2xau_A PRE-mRNA-splicing facto 94.4 0.14 4.6E-06 55.0 10.0 41 210-250 105-147 (773)
347 1uj2_A Uridine-cytidine kinase 94.4 0.029 9.9E-07 51.4 4.2 38 215-252 23-64 (252)
348 3cf2_A TER ATPase, transitiona 94.3 0.091 3.1E-06 56.2 8.4 28 210-237 507-534 (806)
349 3igf_A ALL4481 protein; two-do 94.3 0.024 8.4E-07 55.2 3.6 35 216-251 4-38 (374)
350 4ag6_A VIRB4 ATPase, type IV s 94.3 0.055 1.9E-06 53.0 6.2 48 213-261 34-81 (392)
351 1ixz_A ATP-dependent metallopr 94.3 0.02 6.8E-07 52.4 2.8 36 210-251 47-82 (254)
352 3ux8_A Excinuclease ABC, A sub 94.3 0.18 6.2E-06 53.1 10.5 31 201-231 31-61 (670)
353 4a8j_A Elongator complex prote 94.3 0.014 4.7E-07 56.0 1.7 131 308-450 199-347 (361)
354 1s2m_A Putative ATP-dependent 94.3 0.078 2.7E-06 51.7 7.2 113 215-339 59-177 (400)
355 1wb9_A DNA mismatch repair pro 94.2 0.12 4E-06 55.5 9.0 27 212-238 605-631 (800)
356 3v9p_A DTMP kinase, thymidylat 94.2 0.042 1.5E-06 49.5 4.8 40 210-250 21-64 (227)
357 3ux8_A Excinuclease ABC, A sub 94.2 0.18 6.2E-06 53.1 10.4 32 203-234 337-368 (670)
358 3ld9_A DTMP kinase, thymidylat 94.2 0.035 1.2E-06 49.9 4.2 43 212-254 19-61 (223)
359 1fuu_A Yeast initiation factor 94.2 0.11 3.9E-06 50.2 8.3 113 216-340 60-177 (394)
360 1d2n_A N-ethylmaleimide-sensit 94.2 0.051 1.7E-06 50.2 5.4 34 214-251 64-97 (272)
361 2c9o_A RUVB-like 1; hexameric 94.2 0.053 1.8E-06 54.4 5.9 40 210-251 59-98 (456)
362 2bbs_A Cystic fibrosis transme 94.2 0.02 7E-07 53.7 2.7 34 203-236 53-86 (290)
363 4a82_A Cystic fibrosis transme 94.2 0.12 4.2E-06 53.4 8.8 33 204-236 357-389 (578)
364 2iyv_A Shikimate kinase, SK; t 94.1 0.03 1E-06 48.4 3.5 23 216-238 4-26 (184)
365 3be4_A Adenylate kinase; malar 94.1 0.032 1.1E-06 49.8 3.8 26 213-238 4-29 (217)
366 2j0s_A ATP-dependent RNA helic 94.1 0.19 6.4E-06 49.1 9.7 113 215-339 75-193 (410)
367 1p9r_A General secretion pathw 94.1 0.038 1.3E-06 54.7 4.6 37 212-249 165-201 (418)
368 1q0u_A Bstdead; DEAD protein, 94.1 0.025 8.5E-07 50.5 2.9 114 215-340 42-165 (219)
369 3b85_A Phosphate starvation-in 94.1 0.024 8.1E-07 50.5 2.7 33 210-243 18-50 (208)
370 1via_A Shikimate kinase; struc 94.0 0.032 1.1E-06 47.8 3.5 23 216-238 6-28 (175)
371 3dkp_A Probable ATP-dependent 94.0 0.14 4.8E-06 46.3 8.0 50 215-264 67-120 (245)
372 1a7j_A Phosphoribulokinase; tr 94.0 0.035 1.2E-06 52.1 3.9 39 214-253 5-43 (290)
373 2wv9_A Flavivirin protease NS2 94.0 0.2 6.9E-06 52.7 10.1 54 213-270 240-294 (673)
374 1zak_A Adenylate kinase; ATP:A 94.0 0.037 1.3E-06 49.5 3.9 26 213-238 4-29 (222)
375 3e1s_A Exodeoxyribonuclease V, 94.0 0.066 2.2E-06 55.3 6.2 39 213-252 203-241 (574)
376 2jaq_A Deoxyguanosine kinase; 93.9 0.036 1.2E-06 48.5 3.7 23 216-238 2-24 (205)
377 1qf9_A UMP/CMP kinase, protein 93.9 0.039 1.3E-06 47.7 3.9 24 215-238 7-30 (194)
378 4e22_A Cytidylate kinase; P-lo 93.9 0.036 1.2E-06 50.8 3.7 26 212-237 25-50 (252)
379 3tqc_A Pantothenate kinase; bi 93.9 0.055 1.9E-06 51.5 5.0 110 216-340 94-211 (321)
380 4f4c_A Multidrug resistance pr 93.9 0.15 5.1E-06 58.1 9.4 34 203-236 433-466 (1321)
381 2z83_A Helicase/nucleoside tri 93.9 0.074 2.5E-06 53.4 6.3 57 211-271 18-75 (459)
382 2gk6_A Regulator of nonsense t 93.9 0.057 2E-06 56.5 5.6 50 214-263 195-245 (624)
383 2xzl_A ATP-dependent helicase 93.9 0.067 2.3E-06 57.5 6.2 51 214-264 375-426 (802)
384 2npi_A Protein CLP1; CLP1-PCF1 93.8 0.037 1.3E-06 55.5 3.9 33 211-243 135-167 (460)
385 3ozx_A RNAse L inhibitor; ATP 93.8 0.23 7.8E-06 50.8 9.8 26 211-236 22-47 (538)
386 3tlx_A Adenylate kinase 2; str 93.8 0.044 1.5E-06 49.9 4.0 26 213-238 28-53 (243)
387 2i3b_A HCR-ntpase, human cance 93.8 0.047 1.6E-06 47.7 4.0 29 214-243 1-29 (189)
388 1gtv_A TMK, thymidylate kinase 93.7 0.019 6.4E-07 50.9 1.4 34 216-250 2-35 (214)
389 2dhr_A FTSH; AAA+ protein, hex 93.7 0.056 1.9E-06 54.7 5.0 37 210-252 62-98 (499)
390 1m8p_A Sulfate adenylyltransfe 93.7 0.29 1E-05 50.4 10.5 40 212-252 394-434 (573)
391 3cr8_A Sulfate adenylyltranfer 93.7 0.034 1.2E-06 57.1 3.4 43 210-252 365-407 (552)
392 2wsm_A Hydrogenase expression/ 93.7 0.068 2.3E-06 47.4 5.1 37 216-254 32-68 (221)
393 3exa_A TRNA delta(2)-isopenten 93.7 0.037 1.3E-06 52.3 3.4 33 214-252 3-35 (322)
394 4tmk_A Protein (thymidylate ki 93.7 0.1 3.6E-06 46.4 6.2 38 213-252 2-40 (213)
395 2whx_A Serine protease/ntpase/ 93.7 0.34 1.2E-05 50.5 11.0 57 210-270 182-239 (618)
396 1ukz_A Uridylate kinase; trans 93.7 0.046 1.6E-06 48.0 3.9 24 214-237 15-38 (203)
397 2db3_A ATP-dependent RNA helic 93.7 0.28 9.7E-06 48.6 10.1 114 214-339 93-217 (434)
398 1iy2_A ATP-dependent metallopr 93.7 0.031 1.1E-06 51.9 2.9 36 210-251 71-106 (278)
399 1odf_A YGR205W, hypothetical 3 93.7 0.046 1.6E-06 51.3 4.0 41 212-253 29-72 (290)
400 3mfy_A V-type ATP synthase alp 93.7 0.13 4.3E-06 52.2 7.4 63 195-261 209-271 (588)
401 1e6c_A Shikimate kinase; phosp 93.7 0.039 1.3E-06 46.9 3.3 23 216-238 4-26 (173)
402 1njg_A DNA polymerase III subu 93.6 0.051 1.7E-06 48.5 4.2 25 215-239 46-70 (250)
403 3ez9_A Para; DNA binding, wing 93.6 0.026 8.8E-07 55.7 2.3 39 216-254 114-157 (403)
404 3nwj_A ATSK2; P loop, shikimat 93.6 0.021 7.3E-07 52.3 1.6 36 203-238 34-72 (250)
405 3fb4_A Adenylate kinase; psych 93.6 0.047 1.6E-06 48.4 3.8 23 216-238 2-24 (216)
406 2gza_A Type IV secretion syste 93.5 0.027 9.1E-07 54.7 2.2 29 210-238 171-199 (361)
407 2pjz_A Hypothetical protein ST 93.5 0.03 1E-06 51.8 2.4 34 203-237 20-53 (263)
408 4a4z_A Antiviral helicase SKI2 93.5 0.3 1E-05 53.9 10.6 111 211-340 51-162 (997)
409 1cke_A CK, MSSA, protein (cyti 93.5 0.059 2E-06 48.1 4.3 25 214-238 5-29 (227)
410 2qag_B Septin-6, protein NEDD5 93.4 0.033 1.1E-06 55.0 2.7 33 204-236 30-64 (427)
411 3g5u_A MCG1178, multidrug resi 93.4 0.17 5.9E-06 57.4 8.9 34 203-236 405-438 (1284)
412 1zuh_A Shikimate kinase; alpha 93.4 0.055 1.9E-06 45.9 3.8 24 215-238 8-31 (168)
413 2c61_A A-type ATP synthase non 93.4 0.035 1.2E-06 55.3 2.8 65 195-260 134-201 (469)
414 3d3q_A TRNA delta(2)-isopenten 93.4 0.046 1.6E-06 52.3 3.6 32 215-252 8-39 (340)
415 2fwr_A DNA repair protein RAD2 93.4 0.22 7.4E-06 49.9 8.8 96 215-339 109-206 (472)
416 1ak2_A Adenylate kinase isoenz 93.3 0.063 2.2E-06 48.4 4.3 26 213-238 15-40 (233)
417 2vp4_A Deoxynucleoside kinase; 93.3 0.045 1.5E-06 49.3 3.3 35 210-249 16-50 (230)
418 1ex7_A Guanylate kinase; subst 93.3 0.046 1.6E-06 47.6 3.2 22 216-237 3-24 (186)
419 1in4_A RUVB, holliday junction 93.3 0.092 3.2E-06 50.2 5.6 24 215-238 52-75 (334)
420 1um8_A ATP-dependent CLP prote 93.3 0.071 2.4E-06 51.8 4.9 34 214-251 72-105 (376)
421 3foz_A TRNA delta(2)-isopenten 93.2 0.057 2E-06 50.9 3.9 33 214-252 10-42 (316)
422 3dl0_A Adenylate kinase; phosp 93.2 0.051 1.7E-06 48.3 3.4 22 216-237 2-23 (216)
423 3upu_A ATP-dependent DNA helic 93.2 0.079 2.7E-06 53.2 5.1 38 216-254 47-85 (459)
424 2i4i_A ATP-dependent RNA helic 93.2 0.24 8.2E-06 48.4 8.6 114 214-339 52-189 (417)
425 1gku_B Reverse gyrase, TOP-RG; 93.2 0.093 3.2E-06 58.3 6.1 114 213-339 70-189 (1054)
426 2pt5_A Shikimate kinase, SK; a 93.1 0.062 2.1E-06 45.4 3.7 23 216-238 2-24 (168)
427 3crm_A TRNA delta(2)-isopenten 93.1 0.056 1.9E-06 51.4 3.6 32 215-252 6-37 (323)
428 2if2_A Dephospho-COA kinase; a 93.0 0.055 1.9E-06 47.5 3.3 21 216-236 3-23 (204)
429 3hws_A ATP-dependent CLP prote 93.0 0.074 2.5E-06 51.5 4.5 34 214-251 51-84 (363)
430 1ojl_A Transcriptional regulat 93.0 0.071 2.4E-06 50.3 4.2 44 216-260 27-70 (304)
431 1hqc_A RUVB; extended AAA-ATPa 93.0 0.075 2.6E-06 50.3 4.5 34 216-253 40-73 (324)
432 2r62_A Cell division protease 93.0 0.036 1.2E-06 51.0 2.1 22 217-238 47-68 (268)
433 1bif_A 6-phosphofructo-2-kinas 93.0 0.9 3.1E-05 45.5 12.6 38 214-252 39-76 (469)
434 1sxj_C Activator 1 40 kDa subu 93.0 0.042 1.4E-06 52.7 2.6 23 217-239 49-71 (340)
435 3r20_A Cytidylate kinase; stru 92.9 0.067 2.3E-06 48.4 3.8 25 214-238 9-33 (233)
436 3vr4_A V-type sodium ATPase ca 92.9 0.1 3.5E-06 53.1 5.4 64 195-262 214-277 (600)
437 2xb4_A Adenylate kinase; ATP-b 92.9 0.067 2.3E-06 47.9 3.7 23 216-238 2-24 (223)
438 1jjv_A Dephospho-COA kinase; P 92.9 0.058 2E-06 47.5 3.2 21 216-236 4-24 (206)
439 1q3t_A Cytidylate kinase; nucl 92.9 0.083 2.8E-06 47.7 4.3 29 210-238 12-40 (236)
440 1ye8_A Protein THEP1, hypothet 92.9 0.061 2.1E-06 46.5 3.2 23 216-238 2-24 (178)
441 3g5u_A MCG1178, multidrug resi 92.9 0.25 8.5E-06 56.1 9.1 34 203-236 1048-1081(1284)
442 3eph_A TRNA isopentenyltransfe 92.7 0.074 2.5E-06 52.0 4.0 24 215-238 3-26 (409)
443 1vht_A Dephospho-COA kinase; s 92.7 0.069 2.4E-06 47.4 3.5 24 213-236 3-26 (218)
444 1f2t_A RAD50 ABC-ATPase; DNA d 92.7 0.086 2.9E-06 44.0 3.9 27 211-238 21-47 (149)
445 3pfi_A Holliday junction ATP-d 92.7 0.1 3.4E-06 49.8 4.9 32 216-251 57-88 (338)
446 1uf9_A TT1252 protein; P-loop, 92.7 0.074 2.5E-06 46.4 3.6 23 214-236 8-30 (203)
447 1sxj_E Activator 1 40 kDa subu 92.7 0.33 1.1E-05 46.4 8.6 22 217-238 39-60 (354)
448 2v1x_A ATP-dependent DNA helic 92.6 0.67 2.3E-05 47.9 11.3 113 214-339 59-179 (591)
449 2wjy_A Regulator of nonsense t 92.6 0.12 4E-06 55.6 5.7 50 214-263 371-421 (800)
450 1e4v_A Adenylate kinase; trans 92.6 0.076 2.6E-06 47.1 3.6 22 217-238 3-24 (214)
451 1ltq_A Polynucleotide kinase; 92.5 0.064 2.2E-06 50.3 3.2 22 215-236 3-24 (301)
452 1u0j_A DNA replication protein 92.4 0.11 3.7E-06 47.9 4.5 27 212-238 102-128 (267)
453 3gqb_A V-type ATP synthase alp 92.4 0.1 3.5E-06 52.8 4.5 64 195-262 203-266 (578)
454 3m6a_A ATP-dependent protease 92.3 0.085 2.9E-06 54.1 4.0 26 213-238 107-132 (543)
455 2gj8_A MNME, tRNA modification 92.3 0.084 2.9E-06 44.9 3.4 23 213-235 3-25 (172)
456 1pui_A ENGB, probable GTP-bind 92.3 0.071 2.4E-06 46.8 3.0 32 202-235 16-47 (210)
457 4a2w_A RIG-I, retinoic acid in 92.3 0.64 2.2E-05 50.9 11.2 115 213-339 262-385 (936)
458 2pt7_A CAG-ALFA; ATPase, prote 92.3 0.031 1.1E-06 53.5 0.7 29 210-238 167-195 (330)
459 3tqf_A HPR(Ser) kinase; transf 92.3 0.086 2.9E-06 45.1 3.3 24 213-236 15-38 (181)
460 4gl2_A Interferon-induced heli 92.2 0.17 5.9E-06 53.3 6.4 113 215-339 23-150 (699)
461 2hf9_A Probable hydrogenase ni 92.2 0.15 5.1E-06 45.3 5.1 37 216-254 40-76 (226)
462 4f4c_A Multidrug resistance pr 92.0 0.25 8.4E-06 56.3 7.6 168 203-411 1094-1292(1321)
463 2gks_A Bifunctional SAT/APS ki 91.9 0.13 4.3E-06 52.8 4.7 40 212-252 370-409 (546)
464 2f1r_A Molybdopterin-guanine d 91.9 0.13 4.5E-06 44.1 4.1 37 215-252 3-39 (171)
465 2grj_A Dephospho-COA kinase; T 91.8 0.11 3.7E-06 45.5 3.6 24 214-237 12-35 (192)
466 3ake_A Cytidylate kinase; CMP 91.8 0.11 3.9E-06 45.4 3.8 23 216-238 4-26 (208)
467 1x6v_B Bifunctional 3'-phospho 91.8 0.14 4.9E-06 53.1 4.9 37 213-250 51-87 (630)
468 1nij_A Hypothetical protein YJ 91.7 0.12 4.1E-06 49.1 4.1 24 214-237 4-27 (318)
469 2r44_A Uncharacterized protein 91.7 0.14 4.9E-06 48.6 4.7 39 215-257 47-87 (331)
470 3fmo_B ATP-dependent RNA helic 91.6 0.48 1.7E-05 44.4 8.2 38 214-251 131-170 (300)
471 2ocp_A DGK, deoxyguanosine kin 91.6 0.12 4.2E-06 46.7 3.9 26 213-238 1-26 (241)
472 3tmk_A Thymidylate kinase; pho 91.6 0.16 5.4E-06 45.4 4.5 27 212-238 3-29 (216)
473 2f6r_A COA synthase, bifunctio 91.6 0.11 3.8E-06 48.4 3.6 22 214-235 75-96 (281)
474 2rcn_A Probable GTPase ENGC; Y 91.6 0.11 3.7E-06 50.1 3.6 25 212-236 213-237 (358)
475 3of5_A Dethiobiotin synthetase 91.5 0.22 7.5E-06 44.8 5.4 34 216-250 7-40 (228)
476 1sxj_D Activator 1 41 kDa subu 91.4 0.21 7.2E-06 47.7 5.5 37 217-253 61-99 (353)
477 3qks_A DNA double-strand break 91.3 0.14 4.9E-06 45.1 3.9 27 211-238 21-47 (203)
478 1w36_D RECD, exodeoxyribonucle 91.3 0.21 7.1E-06 52.0 5.7 39 213-251 163-204 (608)
479 3qf7_A RAD50; ABC-ATPase, ATPa 91.3 0.1 3.6E-06 50.6 3.1 38 200-238 10-47 (365)
480 2oap_1 GSPE-2, type II secreti 91.3 0.067 2.3E-06 54.4 1.8 37 211-249 257-293 (511)
481 3euj_A Chromosome partition pr 91.2 0.1 3.6E-06 52.4 3.1 38 200-238 16-53 (483)
482 3pxg_A Negative regulator of g 91.2 0.14 4.7E-06 51.5 4.1 25 215-239 202-226 (468)
483 3sfz_A APAF-1, apoptotic pepti 91.1 0.32 1.1E-05 54.7 7.4 40 214-253 147-189 (1249)
484 3lfu_A DNA helicase II; SF1 he 91.1 0.29 1E-05 51.1 6.7 50 216-265 24-77 (647)
485 2ga8_A Hypothetical 39.9 kDa p 91.0 0.15 5.2E-06 48.9 4.0 22 217-238 27-48 (359)
486 2wji_A Ferrous iron transport 91.0 0.13 4.3E-06 43.4 3.0 20 216-235 5-24 (165)
487 3pvs_A Replication-associated 90.9 0.25 8.7E-06 49.2 5.6 34 216-253 52-85 (447)
488 4hlc_A DTMP kinase, thymidylat 90.9 0.26 9.1E-06 43.5 5.2 34 214-249 2-35 (205)
489 1oyw_A RECQ helicase, ATP-depe 90.8 0.84 2.9E-05 46.4 9.6 112 214-339 40-153 (523)
490 3pxi_A Negative regulator of g 90.8 0.23 8E-06 53.1 5.6 36 216-252 523-558 (758)
491 1jr3_A DNA polymerase III subu 90.7 0.18 6.1E-06 48.5 4.3 25 215-239 39-63 (373)
492 2yv5_A YJEQ protein; hydrolase 90.7 0.15 5.2E-06 48.0 3.6 25 211-235 162-186 (302)
493 1e9r_A Conjugal transfer prote 90.6 0.25 8.7E-06 48.9 5.4 36 216-252 55-90 (437)
494 1rif_A DAR protein, DNA helica 90.6 0.23 7.7E-06 46.1 4.7 48 216-263 130-178 (282)
495 2eyq_A TRCF, transcription-rep 90.5 1.7 5.7E-05 48.7 12.3 108 216-337 626-737 (1151)
496 1t9h_A YLOQ, probable GTPase E 90.5 0.049 1.7E-06 51.5 0.0 26 211-236 170-195 (307)
497 1z2a_A RAS-related protein RAB 90.5 0.15 5E-06 42.6 3.0 20 217-236 8-27 (168)
498 2o5v_A DNA replication and rep 90.5 0.15 5.3E-06 49.2 3.5 36 200-236 13-48 (359)
499 2zej_A Dardarin, leucine-rich 90.4 0.12 4.1E-06 44.4 2.4 20 217-236 5-24 (184)
500 2ce2_X GTPase HRAS; signaling 90.4 0.16 5.4E-06 42.1 3.1 21 217-237 6-26 (166)
No 1
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=100.00 E-value=2e-83 Score=649.83 Aligned_cols=423 Identities=32% Similarity=0.556 Sum_probs=385.5
Q ss_pred CCCCCCHHHHHHHHHHHhcCcccHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCCcccccCHH
Q psy2891 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITVFDSLSNTGNAEEIGGLS 92 (452)
Q Consensus 13 ~~~~~~~~aE~~vLg~ll~~~~~~~~i~~~L~p~~F~~~~h~~If~~i~~l~~~~~~id~~tv~~~l~~~~~~~~~gg~~ 92 (452)
+.||+++++|++|||+||.+|+++.++. |+|+|||.+.||.||++|.+|+.+|+|+|++||..+|++. ++.+||.+
T Consensus 9 ~~~p~~~eaE~~vLg~ll~~~~~~~~v~--l~~~dF~~~~h~~If~~i~~l~~~~~~~D~~tv~~~l~~~--l~~~gg~~ 84 (444)
T 3bgw_A 9 TVMLYNEYAEQAVLGSILTEPELIKECP--LTPEHFSPGKHFNIYFTMQDLDRKGQSVDFTSIAARVGEK--LPQLGGFG 84 (444)
T ss_dssp -----CHHHHHHHHHHHHHSTTHHHHSC--CCGGGSCTTHHHHHHHHHHHHHHTTCCCSHHHHHHHSSTT--CGGGTCHH
T ss_pred CCCCCCHHHHHHHHHHHHcCccccceee--cCHHHcCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH--HHHcCcHH
Confidence 5789999999999999999999999987 9999999999999999999999999999999999999887 88999999
Q ss_pred HHHHHHhcCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHH--HHHHHHHHHhhhhhhhhhccCcccH
Q psy2891 93 YLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQAFISRGKEVKQI--LDEAESKIFSIAEKEICINKGFQQI 170 (452)
Q Consensus 93 ~l~~l~~~~~~~~n~~~y~~~l~~~~~~R~l~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~l~~l~~~~~~~~~~~~~~ 170 (452)
||.+|++.+|+.+|+++|+++|++++.+|+++..+.++.+.++++ +++++ ++++++.+.++.... ...++.++
T Consensus 85 yl~~l~~~~~~~~n~~~ya~~v~e~~~~R~li~~~~~i~~~~~~~---~~~~~~~l~~a~~~l~~i~~~~--~~~~~~~~ 159 (444)
T 3bgw_A 85 YLTELAASVASTTTFKQHCQTVSEYFQKRKAISIAQQIIENVNES---DDGPVKPIQEAVSELMEIEASG--TDDDDGSI 159 (444)
T ss_dssp HHHHHHHHCSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CCTHHHHHHHHHHHHSCC--CSSCCCCC
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---CHHHHHHHHHHHHHHHHHHhhc--ccCCCccH
Confidence 999999999999999999999999999999999999999988763 78899 999999999998762 33567889
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCccccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEe
Q psy2891 171 QPLLNRVIKRINKLHNRGTNDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFS 250 (452)
Q Consensus 171 ~~~~~~~~~~i~~~~~~~~~~~~~~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s 250 (452)
.+++.++++.+++.. + ...|+||||+.||+++|||++|++++|+|+||+|||+|++|+|.+++. +|.+|+|||
T Consensus 160 ~~~~~~~~~~i~~~~--~----~~~gi~TG~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~-~g~~vl~fS 232 (444)
T 3bgw_A 160 DEALVTVYEEIESAD--G----NITGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-NDDVVNLHS 232 (444)
T ss_dssp HHHHHHHHHHHHTCC--S----SCCSBCCSCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHH-TTCEEEEEC
T ss_pred HHHHHHHHHHHHHhh--c----CCCCcCCCcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHH-cCCEEEEEE
Confidence 999999999988543 2 456999999999999999999999999999999999999999999986 489999999
Q ss_pred CCCCHHHHHHHHHHHhCCCCccccccCC--CCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCcc-
Q psy2891 251 MEMSGIQLAMRMLGSVGKLDQHKLRTGR--LSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIG- 327 (452)
Q Consensus 251 ~E~~~~~i~~R~~a~~~~i~~~~i~~g~--l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~- 327 (452)
+||+.+++..|+++..++++..++++|. +++++|.++..+...+...+++|++.+.+++++|++.+++++++++ ++
T Consensus 233 lEms~~ql~~R~~~~~~~i~~~~l~~g~~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~~~-~~~ 311 (444)
T 3bgw_A 233 LEMGKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNP-GKR 311 (444)
T ss_dssp SSSCTTHHHHHHHHHHSCCCHHHHHHTGGGTCCSCHHHHHHHHHHHHTSCEEEECCSSCBHHHHHHHHHHHHHHSC-SSC
T ss_pred CCCCHHHHHHHHHHHHcCCCHHHHhcccCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHhC-CCC
Confidence 9999999999999999999999999998 9999999999999999888999999989999999999999999986 99
Q ss_pred -EEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEE
Q psy2891 328 -VIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILF 406 (452)
Q Consensus 328 -~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~ 406 (452)
+|||||||.|.......++.+++.++++.||.+|+++|||||+++|+||+.+.|.+++|.++|+|+||+|+|+||+|++
T Consensus 312 ~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~krp~lsdlr~Sg~ieq~aD~Vi~ 391 (444)
T 3bgw_A 312 VIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEF 391 (444)
T ss_dssp EEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCGGGGGSSCCCCCGGGCCSCSHHHHHCSEEEE
T ss_pred eEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccccCCCCCchhhhhhhhhHHhhCCEEEE
Confidence 9999999999865424688889999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccccCCCCCCeEEEEEeeccCCCcceEEEEEEcCccceecC
Q psy2891 407 IYRDEVYNQNSADKGIAEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452 (452)
Q Consensus 407 l~r~~~~~~~~~~~~~~~l~i~KnR~G~~g~~~l~f~~~~~~f~~~ 452 (452)
|+|+++|+++.+.++.++|++.|||+|++|++.+.|+++++||.|+
T Consensus 392 L~r~~~~~~~~~~~~~~~l~i~K~R~G~~g~v~l~f~~~~~rf~~~ 437 (444)
T 3bgw_A 392 LYRDDYYDKESESKNIVEVIIAKHRDGPVGTVSLAFIKEYGNFVNL 437 (444)
T ss_dssp CCBGGGTCTTCSSTTEEEEEEEEESSSCCEEEEEEEETTTTEEECC
T ss_pred EeccccccccccCCCeEEEEEEcccCCCCeEEEEEEEcCccEEecC
Confidence 9999988765556788999999999999999999999999999875
No 2
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=100.00 E-value=2.5e-81 Score=638.10 Aligned_cols=433 Identities=44% Similarity=0.755 Sum_probs=394.7
Q ss_pred CCCCCCHHHHHHHHHHHhcCcccHHHHHhcC-CCCCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCCcccccCH
Q psy2891 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCL-NSDYFYRYDHRLIFKHIIKLINSSHPADVITVFDSLSNTGNAEEIGGL 91 (452)
Q Consensus 13 ~~~~~~~~aE~~vLg~ll~~~~~~~~i~~~L-~p~~F~~~~h~~If~~i~~l~~~~~~id~~tv~~~l~~~~~~~~~gg~ 91 (452)
+.||++++||++|||+||.+|+++.++.+.| +|+|||.+.||.||++|.+++.+|+|+|++||..+|++.+.++.+||.
T Consensus 4 ~~~p~~~eaE~~vLg~ll~~~~~~~~v~~~L~~~edFy~~~h~~If~ai~~l~~~~~~iD~~tv~~~L~~~~~l~~~gg~ 83 (444)
T 2q6t_A 4 PIPPHSLEAEQSVLGSILLDSDVMDEVEGLLPSPEAFYAEAHRKIYAAMQALRSQGRPVDLVTLSEELSRRGQLEEVGGT 83 (444)
T ss_dssp -CCCCCHHHHHHHHHHHHHCGGGHHHHHHHCCSGGGCSSHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTTTTTTHH
T ss_pred CCCCCCHHHHHHHHHHHHcChhHHHHHHHhcCCHHHcCcHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCChhhcCcH
Confidence 4689999999999999999999999999999 999999999999999999999999999999999999998888999999
Q ss_pred HHHHHHHhcCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhhhhhhhhccCcccHH
Q psy2891 92 SYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQ 171 (452)
Q Consensus 92 ~~l~~l~~~~~~~~n~~~y~~~l~~~~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~ 171 (452)
+||.+|+..+|+.+|+++|+++|++++.+|+++..+.++.+.+++ ...+++++++++++.+.++... ....++.++.
T Consensus 84 ~yl~~L~~~~~s~~n~~~ya~iv~e~~~~R~li~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 160 (444)
T 2q6t_A 84 AYLLQLSEATPTAAYAEHYARIVAEKWTLRRLIQAAGEAMRLAYE-EAGSLDEILDTAGKKILEVALT--KTDTEARPMR 160 (444)
T ss_dssp HHHHHHHHTCSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCSCHHHHHHHHHHHHHHHHHC--SCCCSSEEHH
T ss_pred HHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccCHHHHHHHHHHHHHHHHhh--ccCCCCccHH
Confidence 999999999999999999999999999999999999999998887 3468999999999999999876 2345678999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCccccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 172 PLLNRVIKRINKLHNRGTNDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 172 ~~~~~~~~~i~~~~~~~~~~~~~~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
+++.++++.+++..+++ +...++||||+.||+++|||++|++++|+|+||+|||+|++++|.+++...|.+|+|||+
T Consensus 161 ~~~~~~~~~~~~~~~~~---~~~~~i~tG~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 161 ELVHETFEHIEALFQNK---GEVAGVRTGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp HHHHHHHHHTTC-------------CCCSCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred HHHHHHHHHHHHHHhCC---CCCCcccCCCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 99999999998765544 467899999999999999999999999999999999999999999998756889999999
Q ss_pred CCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEE
Q psy2891 252 EMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIII 331 (452)
Q Consensus 252 E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvI 331 (452)
||+.+++..|+++..++++..+++.|.+++++|.++..+...+...++++.+.+..++.++++.+++++++++ +++|||
T Consensus 238 E~~~~~l~~R~~~~~~~i~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~~~-~~lIvI 316 (444)
T 2q6t_A 238 EMPAAQLTLRMMCSEARIDMNRVRLGQLTDRDFSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQNQ-VGLIII 316 (444)
T ss_dssp SSCHHHHHHHHHHHHTTCCTTTCCGGGCCHHHHHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHHSC-CCEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCHHHHhCCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcC-CCEEEE
Confidence 9999999999999999999999999999999999999999999888999999999999999999999999886 999999
Q ss_pred cCcchhccC--C-CCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEe
Q psy2891 332 DYLQLMSAN--S-RGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIY 408 (452)
Q Consensus 332 D~l~~i~~~--~-~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~ 408 (452)
|||+.+... . ...++.+++.++++.||.+|+++|||||+++|++|..+.|.+++|.++|+|+||+|+|+||+|++|+
T Consensus 317 D~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 317 DYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp ECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred cChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 999999864 2 2357888999999999999999999999999999999888899999999999999999999999999
Q ss_pred cCcccccCCCCCCeEEEEEeeccCCCcceEEEEEEcCccceecC
Q psy2891 409 RDEVYNQNSADKGIAEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452 (452)
Q Consensus 409 r~~~~~~~~~~~~~~~l~i~KnR~G~~g~~~l~f~~~~~~f~~~ 452 (452)
|+++|+++++.++.++++|.|||+|++|++.+.|+++++||.|+
T Consensus 397 r~~~~~~~~~~~~~~~l~i~K~R~g~~g~~~l~f~~~~~~f~~~ 440 (444)
T 2q6t_A 397 RDEYYNPHSEKAGIAEIIVGKQRNGPTGTVELQFHASHVRFNDL 440 (444)
T ss_dssp EGGGTCSSSSCCSEEEEEEEECSSSCCEEEEEEEETTTTEEECC
T ss_pred cccccCCcCCCCCeEEEEEEecCCCCceEEEEEEECCccEEecC
Confidence 99988765555688999999999999999999999999999875
No 3
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=100.00 E-value=1.5e-78 Score=619.39 Aligned_cols=433 Identities=47% Similarity=0.838 Sum_probs=393.5
Q ss_pred CCCCCCHHHHHHHHHHHhcCcccHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCCcccccCHH
Q psy2891 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITVFDSLSNTGNAEEIGGLS 92 (452)
Q Consensus 13 ~~~~~~~~aE~~vLg~ll~~~~~~~~i~~~L~p~~F~~~~h~~If~~i~~l~~~~~~id~~tv~~~l~~~~~~~~~gg~~ 92 (452)
+.||++++||++|||+||.+|+.+.++.+.|+|+|||.+.||.||++|.+++.+|+|+|++||..+|++.+.++.+||.+
T Consensus 8 ~~~p~~~eaE~~vLg~lL~~~~~~~~v~~~L~~edFy~~~h~~If~ai~~l~~~~~~iD~~tv~~~L~~~~~l~~~gg~~ 87 (454)
T 2r6a_A 8 RIPPQSIEAEQAVLGAVFLDPAALVPASEILIPEDFYRAAHQKIFHAMLRVADRGEPVDLVTVTAELAASEQLEEIGGVS 87 (454)
T ss_dssp CCCCCCHHHHHHHHHHHHHCGGGHHHHHHHCCGGGCSSHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHTTCTTTTTHHH
T ss_pred cCCCCCHHHHHHHHHHHHcChHHHHHHHhcCCHHHcCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCChhhcchHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999899999999
Q ss_pred HHHHHHhcCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHhhhhhhhhhccCcccHHH
Q psy2891 93 YLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQP 172 (452)
Q Consensus 93 ~l~~l~~~~~~~~n~~~y~~~l~~~~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~ 172 (452)
||.+|+..+|+.+|+++|+++|++++.+|+++..+.++.+.+++. ..+++++++++++.+..+.... ...++.++.+
T Consensus 88 yl~~L~~~~~s~ani~~ya~iv~e~~~~R~li~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 164 (454)
T 2r6a_A 88 YLSELADAVPTAANVEYYARIVEEKSVLRRLIRTATSIAQDGYTR-EDEIDVLLDEADRKIMEVSQRK--HSGAFKNIKD 164 (454)
T ss_dssp HHHHHHTSCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-CSCSHHHHHHHHHHHHHHHTTS--CCCCCCCHHH
T ss_pred HHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccCHHHHHHHHHHHHHHHHhcc--ccccCccHHH
Confidence 999999999999999999999999999999999999999988873 4688999999999999998763 3456789999
Q ss_pred HHHHHHHHHHHHHhCCCCCCCccccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 173 LLNRVIKRINKLHNRGTNDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 173 ~~~~~~~~i~~~~~~~~~~~~~~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
++.++++.+++..+++ +...++||||+.||+++|||++|++++|+|+||+|||+|+++++.+++...|.+|+|||+|
T Consensus 165 ~~~~~~~~~~~~~~~~---~~~~~i~tG~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 165 ILVQTYDNIEMLHNRD---GEITGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp HHHHHHHHHHHHHSCC---CCCCSBCCSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred HHHHHHHHHHHHHhCC---CCCCCCCCCcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 9999999999887655 5678999999999999999999999999999999999999999999987668899999999
Q ss_pred CCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEc
Q psy2891 253 MSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIID 332 (452)
Q Consensus 253 ~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID 332 (452)
|+..++..|+++..++++..++..|.+++++|.++.++...+...++++.+.+.++++++++.+++++.+++ +++||||
T Consensus 242 ~s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~-~~livID 320 (454)
T 2r6a_A 242 MSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESG-LGMIVID 320 (454)
T ss_dssp SCHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTC-CCEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcC-CCEEEEc
Confidence 999999999999899999999989999999999999999999888999999888999999999999988886 9999999
Q ss_pred CcchhccCC-CCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCc
Q psy2891 333 YLQLMSANS-RGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDE 411 (452)
Q Consensus 333 ~l~~i~~~~-~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~ 411 (452)
|++.+.... ...++.+++.++++.||.+|+++|||||+++|++|+.+.|.+++|.++|+|+||.|+|+||.|++|+|++
T Consensus 321 ~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~ 400 (454)
T 2r6a_A 321 YLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDD 400 (454)
T ss_dssp CGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETT
T ss_pred cHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccc
Confidence 999998643 2346778899999999999999999999999999999888889999999999999999999999999999
Q ss_pred ccccCCCCCCeEEEEEeeccCCCcceEEEEEEcCccceecC
Q psy2891 412 VYNQNSADKGIAEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452 (452)
Q Consensus 412 ~~~~~~~~~~~~~l~i~KnR~G~~g~~~l~f~~~~~~f~~~ 452 (452)
+|+++++.++.+++++.|||+|++|++.+.|++++++|.++
T Consensus 401 ~~~~~~~~~~~~~l~i~K~R~G~~g~v~l~f~~~~~~f~~~ 441 (454)
T 2r6a_A 401 YYNKDSENKNIIEIIIAKQRNGPVGTVQLAFIKEYNKFVNL 441 (454)
T ss_dssp C-------CCEEEEEEEEESSSCCEEEEEEEETTTTEEECC
T ss_pred ccCcccCCCCeEEEEEecccCCCCeEEEEEEEcCccEEeCC
Confidence 88655445688999999999999999999999999999874
No 4
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=100.00 E-value=1.3e-61 Score=469.72 Aligned_cols=280 Identities=40% Similarity=0.710 Sum_probs=258.5
Q ss_pred cHHHHHHHHHHHHHHHHh-CCCCCCCccccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEE
Q psy2891 169 QIQPLLNRVIKRINKLHN-RGTNDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVA 247 (452)
Q Consensus 169 ~~~~~~~~~~~~i~~~~~-~~~~~~~~~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl 247 (452)
++.+++.++++.++++++ ++ +...|+||||+.||+++|||++|++++|+|+||+|||+|++++|.+++. .|.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~---~~~~gi~TG~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g~~Vl 78 (338)
T 4a1f_A 3 NIKEVLESAMDLITENQRKGS---LEVTGIPTGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-DDRGVA 78 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT---TCCCSBCCSCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCEEE
T ss_pred cHHHHHHHHHHHHHHHHhcCC---CCcCcccCCChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEE
Confidence 578889999999999887 55 5788999999999999999999999999999999999999999999986 789999
Q ss_pred EEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCcc
Q psy2891 248 IFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIG 327 (452)
Q Consensus 248 ~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~ 327 (452)
|||+||+.+++..|+++..++++..+++.|.+++++|.++..+...+.+.++||++.+..++++|++.++++++++|+++
T Consensus 79 ~fSlEms~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~ 158 (338)
T 4a1f_A 79 VFSLEMSAEQLALRALSDLTSINMHDLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELG 158 (338)
T ss_dssp EEESSSCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEE
T ss_pred EEeCCCCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999983399
Q ss_pred EEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEE
Q psy2891 328 VIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFI 407 (452)
Q Consensus 328 ~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l 407 (452)
+|||||||+|.......++.++++++++.||.+|+++|||||+++|+||+.++|.+++|.++||||||+|||+||+|++|
T Consensus 159 lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel~vpVi~lsQl~R~~e~r~dkrP~lsDLreSg~IeqdAD~Vl~l 238 (338)
T 4a1f_A 159 IAFIDYLQLMSGSKATKERHEQIAEISRELKTLARELEIPIIALVQLNRSLENRDDKRPILSDIKDSGGIEQDADIVLFL 238 (338)
T ss_dssp EEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHHTSCEEEEEECCGGGGGSSSCSCCGGGSEETTEECCCCSEEEEE
T ss_pred EEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHcCCeEEEEEecCccccccccCCCChHhcccchhhhhhCcEEEEE
Confidence 99999999998643223556679999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCccccc------------CC-C---------------------CCCeEEEEEeeccCCCcceEEEEEEcCccceecC
Q psy2891 408 YRDEVYNQ------------NS-A---------------------DKGIAEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452 (452)
Q Consensus 408 ~r~~~~~~------------~~-~---------------------~~~~~~l~i~KnR~G~~g~~~l~f~~~~~~f~~~ 452 (452)
||+++|++ ++ + .+|.++|+|+|||||++|+++|.|+++++||.|+
T Consensus 239 ~R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eiiiaK~R~G~~g~v~l~f~~~~~~F~~~ 317 (338)
T 4a1f_A 239 YRGYIYQMRAEDNKIDKLKKEGKIEEAQELYLKVNEERRIHKQNGSIEEAEIIVAKNRNGATGTVYTRFNAPFTRYEDM 317 (338)
T ss_dssp ECHHHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTSCCEEEEEEEEGGGTEECCC
T ss_pred ecchhcccccccccccccccccccccccchhhhhhhhhcccccccCCCceEEEEEeccCCCCceEEEEEccccceeccc
Confidence 99999865 32 1 2678999999999999999999999999999885
No 5
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=100.00 E-value=1.6e-56 Score=435.14 Aligned_cols=303 Identities=36% Similarity=0.643 Sum_probs=257.9
Q ss_pred cchHHHHHHHHHHHHhhhhhhhhhccCcccHHHHHHHHHHHHHHHHhCCCCCCCccccccCccccccccCCCCCCcEEEE
Q psy2891 140 KEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTNDNDVTGISTGFFELDKITSGLQPGDLIIV 219 (452)
Q Consensus 140 ~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~tg~~~LD~~~gG~~~G~l~~i 219 (452)
.+++++++++++.+.++.... ...++.++.+++.++++.+++. + +...++||||+.||+++|||++|++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~i~TG~~~LD~~lgGl~~G~l~li 73 (315)
T 3bh0_A 2 SGPVKPIQEAVSELMEIEASG--TDDDDGSIDEALVTVYEEIESA---D---GNITGVPSGFTELDRMTYGYKRRNFVLI 73 (315)
T ss_dssp --------------------------CCCCCHHHHHHHHHHHHTC---S---SSCCSBCCSCHHHHHHHSSBCTTCEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhcc--CCCCcccHHHHHHHHHHHHHhc---c---CCCCCccCChHHHHhhcCCCCCCcEEEE
Confidence 467888999999999987763 3356778999999999998854 2 3567999999999999999999999999
Q ss_pred EeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCC--CCcchHHHHHHHHHHHhCC
Q psy2891 220 AGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGR--LSSDDWPRINDSIKKINKS 297 (452)
Q Consensus 220 ~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~--l~~~~~~~~~~a~~~l~~~ 297 (452)
+|+||+|||+|++|+|.+++. +|.+|+|||+||+.+++..|+++..++++..++..|. +++++|.++..+...+...
T Consensus 74 ~G~pG~GKTtl~l~ia~~~a~-~g~~vl~~slE~s~~~l~~R~~~~~~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~ 152 (315)
T 3bh0_A 74 AARPSMGKTAFALKQAKNMSD-NDDVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLSMAIGEISNS 152 (315)
T ss_dssp ECCTTSSHHHHHHHHHHHHHT-TTCEEEEEESSSCHHHHHHHHHHHHTTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTS
T ss_pred EeCCCCCHHHHHHHHHHHHHH-cCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCC
Confidence 999999999999999999985 5789999999999999999999999999999998888 9999999999999999888
Q ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHcCCcc--EEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCC
Q psy2891 298 QLYIDETPSLNVIELRANSRRLSRQCGKIG--VIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLN 375 (452)
Q Consensus 298 ~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~--~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~ 375 (452)
++++.+.+..++++|++.+++++++++ ++ +||||||+.|.......++.+++..+++.||.+|+++|||||+++|++
T Consensus 153 ~i~i~d~~~~~~~~i~~~i~~l~~~~~-~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~Lk~lAk~~~i~vi~lsql~ 231 (315)
T 3bh0_A 153 NINIFDKAGQSVNYIWSKTRQTKRKNP-GKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLS 231 (315)
T ss_dssp CEEEECCSCCBHHHHHHHHHHHHHTSS-SCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHHHHHHHHHTCEEEEEECCC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcC-CCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEeecC
Confidence 999999888999999999999998886 89 999999999986543467888999999999999999999999999999
Q ss_pred cchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccccCCCCCCeEEEEEeeccCCCcceEEEEEEcCccceecC
Q psy2891 376 RSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452 (452)
Q Consensus 376 r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~~~~~~~~l~i~KnR~G~~g~~~l~f~~~~~~f~~~ 452 (452)
|..+.|.+++|.++|+++|+.|+|+||+|++|+|+++|+++.+.++.++|++.|||+|++|++.+.|++++++|.++
T Consensus 232 r~~e~r~~~~p~l~dlr~sg~ie~~aD~vi~L~r~~~~~~~~~~~~~~~l~v~K~R~G~~g~~~l~f~~~~~~f~~~ 308 (315)
T 3bh0_A 232 RQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYRDDYYDKESESKNIVEVIIAKHRDGPVGTVSLAFIKEYGNFVNL 308 (315)
T ss_dssp GGGTTSSSCCCCGGGGTTTSHHHHHCSEEEEEEEHHHHCTTCTTTTEEEEEEEEETTSCCEEEEEEEEGGGTEEEEC
T ss_pred cccccCCCCCCCHHHhhhhhhhHhhCCEEEEEecccccCccccCCCcEEEEEECCcCCCCceEEEEEECCCCeEecC
Confidence 99988899999999999999999999999999999988765555778999999999999999999999999999874
No 6
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=100.00 E-value=5.6e-44 Score=369.21 Aligned_cols=297 Identities=18% Similarity=0.245 Sum_probs=239.7
Q ss_pred CcchHHHHHHHHH-HHHhhhhhh-hhhccCcccHHHHHHHHHHHHHHHHhCCCCCCCcccccc-CccccccccCCCCCCc
Q psy2891 139 GKEVKQILDEAES-KIFSIAEKE-ICINKGFQQIQPLLNRVIKRINKLHNRGTNDNDVTGIST-GFFELDKITSGLQPGD 215 (452)
Q Consensus 139 ~~~~~~~l~~~~~-~l~~l~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~t-g~~~LD~~~gG~~~G~ 215 (452)
+.|+++++.+... .+.++.... .....++.+..+. ++.+++++.. ....+++| |++.||+++||+++|+
T Consensus 172 ~kD~nd~l~~~g~~~~~~~i~~a~~~~~~~i~~~~~~----~~~i~~~~~~----~~~~~i~t~G~~~LD~~lgGl~~G~ 243 (503)
T 1q57_A 172 CKDANECHLNGHDREIMEQVWNAGPWIPDGVVSALSL----RERIREHLSS----EESVGLLFSGCTGINDKTLGARGGE 243 (503)
T ss_dssp SSSHHHHHTTSCHHHHHHHHTTCCCCCCSSEEEGGGG----HHHHHHHHHH----SCTTCSCCSSCTTHHHHHCCCCTTC
T ss_pred CCCHHHHHHhcCHHHHHHHHHhcCCCCHHHhcChHHH----HHHHHhhhcc----cccCCccccchhhhhHhhcccCCCe
Confidence 5788887754221 222222221 1111233333333 3444444432 25669999 9999999999999999
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccc---cccCCCCcchHHHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHK---LRTGRLSSDDWPRINDSIK 292 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~---i~~g~l~~~~~~~~~~a~~ 292 (452)
+++|+|+||+|||+|++|+|.+++.+.|.+|+|||+||+.+++..|+++..++++..+ +..|.+++++|.++.+++
T Consensus 244 l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l~~r~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~- 322 (503)
T 1q57_A 244 VIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDEL- 322 (503)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHHHHHHHHHHTTSCCTTCHHHHHHHHHTSHHHHHHHHH-
T ss_pred EEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHHHHHH-
Confidence 9999999999999999999999986448999999999999999999999999999875 667778888888766554
Q ss_pred HHhCCCeEEEcCC-CCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEE
Q psy2891 293 KINKSQLYIDETP-SLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILAL 371 (452)
Q Consensus 293 ~l~~~~l~i~~~~-~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l 371 (452)
+...++++.+.+ ..+++++.+.+++++++++ +++||||||+.+.......++.+++.++++.|+.+|+++|||||++
T Consensus 323 -~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~~~-~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~ 400 (503)
T 1q57_A 323 -FGNDTFHLYDSFAEAETDRLLAKLAYMRSGLG-CDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVI 400 (503)
T ss_dssp -HTTTCEEEECCC---CHHHHHHHHHHHHHTTC-CSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred -hccCCEEEECCCCCCCHHHHHHHHHHHHHhcC-CCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEE
Confidence 456789998765 4899999999999998886 9999999999997654345788899999999999999999999999
Q ss_pred ecCCcchhhc----CCCCCCchhhhhhchhhhhhceeEEEecCcccccCCCCCCeEEEEEeecc-CCCcceE-EEEEEcC
Q psy2891 372 SQLNRSLEQR----QNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQR-NGPIGNI-RLTFSGQ 445 (452)
Q Consensus 372 ~ql~r~~~~r----~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~~~~~~~~l~i~KnR-~G~~g~~-~l~f~~~ 445 (452)
+|++| .+++ .+++|.++|+++|+.|+|+||+||+|+|++.. +.++.++|++.||| +|++|++ .+.|+++
T Consensus 401 ~q~~r-~~~~~~~~~~~~p~l~dlr~s~~ie~~aD~vi~l~r~~~~----~~~~~~~l~v~K~R~~G~~g~~~~l~f~~~ 475 (503)
T 1q57_A 401 CHLKN-PDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQG----DMPNLVLVRILKCRFTGDTGIAGYMEYNKE 475 (503)
T ss_dssp EECCC-CSSSSCSTTCCCCCSSSCSSSSHHHHHCSEEEEEEECSSS----SCTTEEEEEEEEETTTCCCEEEEEEEECTT
T ss_pred EcCCc-hhccCccccCCCCChhhhccchHhhecCcEEEEEEeCCcC----CCCCeEEEEEEeccCCCCCCceEEEEEEcC
Confidence 99999 4444 37899999999999999999999999998643 12468999999999 7999997 9999999
Q ss_pred ccceec
Q psy2891 446 YTKFNN 451 (452)
Q Consensus 446 ~~~f~~ 451 (452)
+++|.+
T Consensus 476 ~~~f~~ 481 (503)
T 1q57_A 476 TGWLEP 481 (503)
T ss_dssp TCCEEE
T ss_pred CceEec
Confidence 999976
No 7
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=100.00 E-value=2.9e-36 Score=290.77 Aligned_cols=264 Identities=19% Similarity=0.274 Sum_probs=190.2
Q ss_pred HHHHHHHHhCCCCCCCcccccc-CccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHH
Q psy2891 178 IKRINKLHNRGTNDNDVTGIST-GFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGI 256 (452)
Q Consensus 178 ~~~i~~~~~~~~~~~~~~~i~t-g~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~ 256 (452)
++.+++..+.. ...+++| |++.||.+.+|+++|++++|+|+||+|||||+.+++...+...|.+|+|++.|++..
T Consensus 2 ~~~l~~~~~~~----~~~~i~t~g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~ 77 (296)
T 1cr0_A 2 RERIREHLSSE----ESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVE 77 (296)
T ss_dssp HHHHHHHHHHC----CCCCBCCCSCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHH
T ss_pred hhHhhhhhccC----CcCCcccCCHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHH
Confidence 34555554443 5679999 999999999999999999999999999999999999999865577999999999999
Q ss_pred HHHHHHHHHhCCCCccc---cccCCCCcchHHHHHHHHHHHhCCCeEEEcC-CCCCHHHHHHHHHHHHHHcCCccEEEEc
Q psy2891 257 QLAMRMLGSVGKLDQHK---LRTGRLSSDDWPRINDSIKKINKSQLYIDET-PSLNVIELRANSRRLSRQCGKIGVIIID 332 (452)
Q Consensus 257 ~i~~R~~a~~~~i~~~~---i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~-~~~t~~~i~~~i~~~~~~~~~~~~vvID 332 (452)
++..|+.+...+++... +..+.++++++.+.... .+...++++.+. ...++.++++.++.+...++ +++||||
T Consensus 78 ~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~-p~llilD 154 (296)
T 1cr0_A 78 ETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDE--LFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLG-CDVIILD 154 (296)
T ss_dssp HHHHHHHHHHTTCCGGGCHHHHHHHHHHTHHHHHHHH--HHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTC-CSEEEEE
T ss_pred HHHHHHHHHHcCCChhhccccccCCCCHHHHHHHHHH--HhccCCEEEECCCCCCCHHHHHHHHHHHHHhcC-CCEEEEc
Confidence 99999988877776532 22233344444432221 234457888876 56889999988886666675 9999999
Q ss_pred CcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchh---hcCCCCCCchhhhhhchhhhhhceeEEEec
Q psy2891 333 YLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLE---QRQNKRPIMSDLRESGAIEQDADVILFIYR 409 (452)
Q Consensus 333 ~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~---~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r 409 (452)
+++.+.......++...+..+++.|+.+|+++|++||+++|.+|..+ .+.+++|.++|++||+.+++.||.|++|++
T Consensus 155 ept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~ 234 (296)
T 1cr0_A 155 HISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER 234 (296)
T ss_dssp EEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEE
T ss_pred CccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEec
Confidence 99997643211234367789999999999999999999999986221 245789999999999999999999999998
Q ss_pred CcccccCCCCCCeEEEEEeecc-CCCcceE-EEEEEcCccceecC
Q psy2891 410 DEVYNQNSADKGIAEIIVSKQR-NGPIGNI-RLTFSGQYTKFNNF 452 (452)
Q Consensus 410 ~~~~~~~~~~~~~~~l~i~KnR-~G~~g~~-~l~f~~~~~~f~~~ 452 (452)
.+.+. .++.+++++.||| +|++|.+ .+.|++.+++|.+.
T Consensus 235 ~~~~~----~~~~~~l~i~K~R~~g~~g~~~~~~f~~~~~~f~~~ 275 (296)
T 1cr0_A 235 NQQGD----MPNLVLVRILKCRFTGDTGIAGYMEYNKETGWLEPS 275 (296)
T ss_dssp C-----------CEEEEEEEETTTCCCEEEEEEEECTTTCCEEEC
T ss_pred CcccC----CCCeEEEEEEccccCCCCCceEEEEEEcCccEEecC
Confidence 86531 2457899999999 6999997 99999999999863
No 8
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.8e-32 Score=255.78 Aligned_cols=226 Identities=17% Similarity=0.180 Sum_probs=166.3
Q ss_pred CccccccCcccccccc-CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCc
Q psy2891 193 DVTGISTGFFELDKIT-SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQ 271 (452)
Q Consensus 193 ~~~~i~tg~~~LD~~~-gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~ 271 (452)
++.++|||++.||+++ ||+++|++++|+|+||+|||+||+|+|.+.+.+.+.+|+|+|+||+++++..|+.+.. .+.
T Consensus 8 ~i~ri~TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~--~~~ 85 (251)
T 2zts_A 8 PVRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFG--WDF 85 (251)
T ss_dssp CCCEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTT--CCH
T ss_pred CCCeecCCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcC--CCh
Confidence 5779999999999986 7999999999999999999999999999987767899999999999999999987643 333
Q ss_pred cc-cccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHH
Q psy2891 272 HK-LRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEI 350 (452)
Q Consensus 272 ~~-i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~ 350 (452)
.. +..+.+...++...... .. ....+......+.+++.+.++++...++ ++++|||+++.+.... .+...+
T Consensus 86 ~~~~~~~~~~~~d~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vviD~~~~l~~~~---~~~~~~ 157 (251)
T 2zts_A 86 EKYEKEGKIAIVDGVSSVVG---LP-SEEKFVLEDRFNVDNFLRYIYRVVKAIN-AKRLVIDSIPSIALRL---EEERKI 157 (251)
T ss_dssp HHHHHTTSEEEEC-----------------------CCHHHHHHHHHHHHHHTT-CSEEEEECHHHHHHHS---SSGGGH
T ss_pred HHHHhcCcchhhhhHHHHhh---cc-cchhccccccccHHHHHHHHHHHHHhcC-CcEEEEEcHHHHhhhc---cChHHH
Confidence 22 23344433333211111 00 0111222345678889999999888886 9999999999887543 223456
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccccCCCCCCeEEEEEeec
Q psy2891 351 SEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQ 430 (452)
Q Consensus 351 ~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~~~~~~~~l~i~Kn 430 (452)
.++++.|+.+|+++||++++++|+++ |..+++++++.+++.||.|+.|++.+.. ....+.+.|.|+
T Consensus 158 ~~~~~~L~~~a~~~~i~vi~~~q~~~---------~~~~~~~~~~~~~~~aD~vi~l~~~~~~-----~~~~R~l~I~K~ 223 (251)
T 2zts_A 158 REVLLKLNTILLEMGVTTILTTEAPD---------PQHGKLSRYGIEEFIARGVIVLDLQEKN-----IELKRYVLIRKM 223 (251)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEECCC-------------CCSSSSSCGGGGCSEEEEEEEEECS-----SSEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEEec---------ccccccccCCceeEEeeEEEEEEEEecC-----CeEEEEEEEEEc
Confidence 78899999999999999999999875 4556788999999999999999987543 233567999999
Q ss_pred cCCCcceEEEEE
Q psy2891 431 RNGPIGNIRLTF 442 (452)
Q Consensus 431 R~G~~g~~~l~f 442 (452)
|+|+.+...+.|
T Consensus 224 R~~~~~~~~~~f 235 (251)
T 2zts_A 224 RETRHSMKKYPF 235 (251)
T ss_dssp TTCCCCCBEEEE
T ss_pred CCCCCCCEEEEE
Confidence 999865543334
No 9
>2r5u_A Replicative DNA helicase; DNAB, primase, replication, ATP-binding, autocatal cleavage, DNA replication, DNA-binding, endonuclease; 1.90A {Mycobacterium tuberculosis}
Probab=99.97 E-value=3.1e-31 Score=238.95 Aligned_cols=172 Identities=31% Similarity=0.626 Sum_probs=137.5
Q ss_pred CCCCCCHHHHHHHHHHHhcCcccHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCCcccccCHH
Q psy2891 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITVFDSLSNTGNAEEIGGLS 92 (452)
Q Consensus 13 ~~~~~~~~aE~~vLg~ll~~~~~~~~i~~~L~p~~F~~~~h~~If~~i~~l~~~~~~id~~tv~~~l~~~~~~~~~gg~~ 92 (452)
+.+|++++||++|||+||.+|+.+.++.+.|+|+|||.+.||.||++|.+|+.+|+|+|++||..+|.+.+.++.+||..
T Consensus 25 ~~~P~~~eAEqaVLG~lL~d~~~~~~v~~~L~~edFy~~~H~~If~ai~~L~~~g~piD~vtv~~~L~~~~~l~~vGG~~ 104 (200)
T 2r5u_A 25 RQPPQDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYDAILDLYGRGEPADAVTVAAELDRRGLLRRIGGAP 104 (200)
T ss_dssp -CCSCCHHHHHHHHHHHHHCHHHHHHHHTTCCTTCCSSHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHTTCHHHHTCHH
T ss_pred cCCCCCHHHHHHHHHHHHcCHhhHHHHhccCCHHHcCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCchhhcCcHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHhhhhhhhhhccCcccHH
Q psy2891 93 YLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQAFISR-GKEVKQILDEAESKIFSIAEKEICINKGFQQIQ 171 (452)
Q Consensus 93 ~l~~l~~~~~~~~n~~~y~~~l~~~~~~R~l~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~~~~ 171 (452)
||.+|+..+|+.+|+.+|+++|++++.+|+++..+.++.+.++++. +.+++++++++++.+++++.. ....++.++.
T Consensus 105 yL~~L~~~~~s~ani~~Ya~iV~e~~~~R~li~~~~~i~~~a~~~~~~~~~~~~ld~ae~~l~~i~~~--~~~~~~~~i~ 182 (200)
T 2r5u_A 105 YLHTLISTVPTAANAGYYASIVAEKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYDVADR--RLSEDFVALE 182 (200)
T ss_dssp HHHHHHTTCSSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCCHHHHHHHHHHHHHHHHhh--ccCCCcccHH
Confidence 9999999999999999999999999999999999999999988744 368999999999999999876 3345788899
Q ss_pred HHHHHHHHHHHHHHh
Q psy2891 172 PLLNRVIKRINKLHN 186 (452)
Q Consensus 172 ~~~~~~~~~i~~~~~ 186 (452)
+++.++++.|+++.+
T Consensus 183 ~~l~~~~~~ie~~~~ 197 (200)
T 2r5u_A 183 DLLQPTMDEIDAIAS 197 (200)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999986643
No 10
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=99.95 E-value=7.1e-28 Score=236.71 Aligned_cols=220 Identities=17% Similarity=0.182 Sum_probs=160.3
Q ss_pred CccccccCcccccccc--CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCC
Q psy2891 193 DVTGISTGFFELDKIT--SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLD 270 (452)
Q Consensus 193 ~~~~i~tg~~~LD~~~--gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~ 270 (452)
...++|||++.||.++ |||++|++++|+|+||+|||+|+++++.+++. .|.+|+||++|++..++. +...|++
T Consensus 51 ~~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~-~g~~vlyi~~E~s~~~~~----a~~~g~d 125 (366)
T 1xp8_A 51 DVQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQK-AGGTCAFIDAEHALDPVY----ARALGVN 125 (366)
T ss_dssp CCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCCCCHHH----HHHTTCC
T ss_pred cCceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHH-CCCeEEEEECCCChhHHH----HHHcCCC
Confidence 4568999999999985 59999999999999999999999999999975 688999999999987764 2234554
Q ss_pred ccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCC-----C-
Q psy2891 271 QHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRG-----E- 344 (452)
Q Consensus 271 ~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~-----~- 344 (452)
.. ++++.+. .+.+++.+.++++.+..+ +++|||||++.+...... +
T Consensus 126 ~~-------------------------~l~i~~~--~~~e~~l~~l~~l~~~~~-~~lVVIDsl~~l~~~~e~~g~~gd~ 177 (366)
T 1xp8_A 126 TD-------------------------ELLVSQP--DNGEQALEIMELLVRSGA-IDVVVVDSVAALTPRAEIEGDMGDS 177 (366)
T ss_dssp GG-------------------------GCEEECC--SSHHHHHHHHHHHHTTTC-CSEEEEECTTTCCCSTTC-------
T ss_pred HH-------------------------HceeecC--CcHHHHHHHHHHHHhcCC-CCEEEEeChHHhccccccccccccc
Confidence 32 2344432 367888888888877665 999999999998742111 1
Q ss_pred ---CHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcC--CCCCCchhhhhhchhhhhhceeEEEecCcc-cccCCC
Q psy2891 345 ---NRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQ--NKRPIMSDLRESGAIEQDADVILFIYRDEV-YNQNSA 418 (452)
Q Consensus 345 ---~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~--~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~-~~~~~~ 418 (452)
.....+..+++.|+.+|+++||+||+++|+++..+.+. ..+| .+++.++++||++++|+|.+. +...+.
T Consensus 178 ~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~fg~p~~~-----~gg~al~~~a~~rl~L~r~~~~~k~~~~ 252 (366)
T 1xp8_A 178 LPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETT-----TGGRALKFYASVRLDVRKIGQPTKVGND 252 (366)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC--------------------CHHHHHHHCSEEEEEEEESCCC-----
T ss_pred hhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecccccCcccCCcccc-----CCcchhhheeeEEEEEEecchhcccCcc
Confidence 12345788999999999999999999999998664331 1233 357889999999999999875 432111
Q ss_pred -CCCeEEEEEeeccCCCc---ceEEEEEEcCcccee
Q psy2891 419 -DKGIAEIIVSKQRNGPI---GNIRLTFSGQYTKFN 450 (452)
Q Consensus 419 -~~~~~~l~i~KnR~G~~---g~~~l~f~~~~~~f~ 450 (452)
..+.+++.|.|||+|++ +.+.+.|.....+|.
T Consensus 253 ~~g~~~~v~v~Knr~~p~~~~~~f~i~~~~Gi~~~~ 288 (366)
T 1xp8_A 253 AVANTVKIKTVKNKVAAPFKEVELALVYGKGFDQLS 288 (366)
T ss_dssp -CEEEEEEEEEEESSSCCCCEEEEEEETTTEECHHH
T ss_pred ccCCEEEEEEEcCCCCCCCceEEEEEEeCCCcccch
Confidence 12468999999999986 345666666665554
No 11
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.95 E-value=9.5e-28 Score=270.73 Aligned_cols=232 Identities=21% Similarity=0.213 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHHHHHhCCC-------CCCCccccccCcccccccc--CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHh
Q psy2891 171 QPLLNRVIKRINKLHNRGT-------NDNDVTGISTGFFELDKIT--SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE 241 (452)
Q Consensus 171 ~~~~~~~~~~i~~~~~~~~-------~~~~~~~i~tg~~~LD~~~--gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~ 241 (452)
.+++..+++.|++.+..+. ......+++||++.||+++ ||+++|++++|+|+||+|||+|++++|.+++.
T Consensus 680 ~~~l~~~~~~ie~~~~~g~~~~l~~~~~~~~~~i~TG~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~- 758 (1706)
T 3cmw_A 680 QKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR- 758 (1706)
T ss_dssp HHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhccCCcccccccccccccccccCcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHH-
Confidence 3567777888887654210 0024678999999999996 59999999999999999999999999999985
Q ss_pred CCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHH
Q psy2891 242 NKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSR 321 (452)
Q Consensus 242 ~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~ 321 (452)
.|.+|+|||+||+..++. +...|++.. ++++.+. .+++++.+.++++++
T Consensus 759 ~g~~VlyiS~Ees~~ql~----A~~lGvd~~-------------------------~L~i~~~--~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 759 EGKTCAFIDAEHALDPIY----ARKLGVDID-------------------------NLLCSQP--DTGEQALEICDALAR 807 (1706)
T ss_dssp TTCCEEEECTTSCCCHHH----HHHTTCCGG-------------------------GCEEECC--SSHHHHHHHHHHHHH
T ss_pred cCCCeEEEeccchHHHHH----HHHcCCChh-------------------------heEEecC--CcHHHHHHHHHHHHH
Confidence 688999999999998874 444566542 2455543 378899999999888
Q ss_pred HcCCccEEEEcCcchhcc-----CCCCC----CHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhh
Q psy2891 322 QCGKIGVIIIDYLQLMSA-----NSRGE----NRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLR 392 (452)
Q Consensus 322 ~~~~~~~vvID~l~~i~~-----~~~~~----~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~ 392 (452)
+++ +++|||||++.+.. ...+. .....+..+++.|+.+|+++|++||+++|+++..+.+.+ +|. .-.
T Consensus 808 ~~~-~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~G-dp~--~p~ 883 (1706)
T 3cmw_A 808 SGA-VDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG-NPE--TTT 883 (1706)
T ss_dssp HTC-CSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSS-CCE--EES
T ss_pred ccC-CCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCccccccC-Ccc--ccC
Confidence 886 99999999999874 11111 244568888999999999999999999999987655432 221 122
Q ss_pred hhchhhhhhceeEEEecCcccccCCCCC-CeEEEEEeeccCCCcceE
Q psy2891 393 ESGAIEQDADVILFIYRDEVYNQNSADK-GIAEIIVSKQRNGPIGNI 438 (452)
Q Consensus 393 ~S~~ie~~aD~vl~l~r~~~~~~~~~~~-~~~~l~i~KnR~G~~g~~ 438 (452)
+|+.|+|+||++++++|+++|++.+... +.++++++|||+|+++..
T Consensus 884 gs~~Leq~ADvvl~L~R~~~~~~g~~~~g~~r~l~V~KnR~gp~~~~ 930 (1706)
T 3cmw_A 884 GGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQ 930 (1706)
T ss_dssp SCSHHHHHEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCSCCE
T ss_pred CcchhhheeeEEEEEEecccccccccccCcEEEEEEEecCCCCCCce
Confidence 5899999999999999998775322222 378999999999998863
No 12
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=99.94 E-value=8.2e-26 Score=221.42 Aligned_cols=212 Identities=20% Similarity=0.220 Sum_probs=153.5
Q ss_pred CccccccCcccccccc--CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCC
Q psy2891 193 DVTGISTGFFELDKIT--SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLD 270 (452)
Q Consensus 193 ~~~~i~tg~~~LD~~~--gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~ 270 (452)
...++|||++.||.++ |||++|.+++|+|+||+|||+||++++.+++. .|.+|+||++|++.++.. +...|++
T Consensus 40 ~~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~-~g~~vlyid~E~s~~~~~----a~~~g~~ 114 (356)
T 1u94_A 40 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHALDPIY----ARKLGVD 114 (356)
T ss_dssp CCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCCCCHHH----HHHTTCC
T ss_pred cCCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCCccHHH----HHHcCCC
Confidence 4568999999999985 69999999999999999999999999999975 688999999999876553 2234544
Q ss_pred ccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCC----C-CC-
Q psy2891 271 QHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANS----R-GE- 344 (452)
Q Consensus 271 ~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~----~-~~- 344 (452)
.. ++++.+. .+.+++.+.++.+.+..+ +++||||+++.+.... . ++
T Consensus 115 ~~-------------------------~l~i~~~--~~~e~~~~~~~~l~~~~~-~~lVVIDsl~~l~~~~e~~~~~g~~ 166 (356)
T 1u94_A 115 ID-------------------------NLLCSQP--DTGEQALEICDALARSGA-VDVIVVDSVAALTPKAEIEGEIGDS 166 (356)
T ss_dssp GG-------------------------GCEEECC--SSHHHHHHHHHHHHHHTC-CSEEEEECGGGCCCHHHHTTC----
T ss_pred hh-------------------------heeeeCC--CCHHHHHHHHHHHHhccC-CCEEEEcCHHHhcchhhhccccccc
Confidence 32 2334332 357888888888877775 9999999999987411 0 01
Q ss_pred ---CHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhc--CCCCCCchhhhhhchhhhhhceeEEEecCcccccCCC-
Q psy2891 345 ---NRATEISEISRNLKGLAKEINCPILALSQLNRSLEQR--QNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSA- 418 (452)
Q Consensus 345 ---~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r--~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~~- 418 (452)
.....+..+++.|+.+++++||+||+++|+++..+.+ ...+|. ++..++++||+++.++|.+++.....
T Consensus 167 ~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg~~~~~~-----gG~~l~~~advrl~l~r~~~~k~g~~~ 241 (356)
T 1u94_A 167 HMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTT-----GGNALKFYASVRLDIRRIGAVKEGENV 241 (356)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--------------CT-----TCSHHHHHCSEEEEEEEEEEEESSSSE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccC-----CCcceeeeccEEEEEEEeeeeccCccc
Confidence 1223578889999999999999999999999875443 123342 34579999999999999876532111
Q ss_pred CCCeEEEEEeeccCCC-cceEEEEE
Q psy2891 419 DKGIAEIIVSKQRNGP-IGNIRLTF 442 (452)
Q Consensus 419 ~~~~~~l~i~KnR~G~-~g~~~l~f 442 (452)
..+.+.+.|.|||+++ .+.+.|..
T Consensus 242 ~g~~~~~~i~K~r~~p~~~~~~f~i 266 (356)
T 1u94_A 242 VGSETRVKVVKNKIAAPFKQAEFQI 266 (356)
T ss_dssp EEEEEEEEEEEESSBCSCCEEEEEE
T ss_pred cCcEEEEEECCCccCCCCCcEEEEE
Confidence 1256899999999998 56666554
No 13
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.94 E-value=1.5e-26 Score=263.33 Aligned_cols=240 Identities=20% Similarity=0.216 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHHHHhCCC-------CCCCccccccCcccccccc--CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhC
Q psy2891 172 PLLNRVIKRINKLHNRGT-------NDNDVTGISTGFFELDKIT--SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIEN 242 (452)
Q Consensus 172 ~~~~~~~~~i~~~~~~~~-------~~~~~~~i~tg~~~LD~~~--gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~ 242 (452)
.++..+++.+++.+..+. ......++|||++.||+++ ||+++|++++|+|+||+|||+|+++++.+++. .
T Consensus 332 ~~l~~a~~~i~~~~g~~~~~~l~~~~~~~~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~-~ 410 (2050)
T 3cmu_A 332 KALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-E 410 (2050)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEGGGCTTTSCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHhhCcCcceecccccccCCceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHh-c
Confidence 355667777776653220 0124678999999999996 59999999999999999999999999999974 6
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHH
Q psy2891 243 KLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQ 322 (452)
Q Consensus 243 g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~ 322 (452)
|.+|+|||+||+..++. +...|++.. ++++.+. .+++++.+.++++.+.
T Consensus 411 G~~vlyis~E~s~~~~~----a~~lGvd~~-------------------------~L~I~~~--~~~e~il~~~~~lv~~ 459 (2050)
T 3cmu_A 411 GKTCAFIDAEHALDPIY----ARKLGVDID-------------------------NLLCSQP--DTGEQALEICDALARS 459 (2050)
T ss_dssp TCCEEEECTTSCCCHHH----HHHTTCCTT-------------------------TCEEECC--SSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCHHHHH----HHHcCCCHH-------------------------HeEEeCC--CCHHHHHHHHHHHHHh
Confidence 88999999999998874 333555432 3455543 4789999999988888
Q ss_pred cCCccEEEEcCcchhcc-C----CCCC----CHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhc--CCCCCCchhh
Q psy2891 323 CGKIGVIIIDYLQLMSA-N----SRGE----NRATEISEISRNLKGLAKEINCPILALSQLNRSLEQR--QNKRPIMSDL 391 (452)
Q Consensus 323 ~~~~~~vvID~l~~i~~-~----~~~~----~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r--~~~~p~l~dl 391 (452)
++ +++|||||++.+.+ . ..++ .....+...++.|+.+|+++|||||+++|+++..+.+ .+++|
T Consensus 460 ~~-~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g~p~~p----- 533 (2050)
T 3cmu_A 460 GA-VDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETT----- 533 (2050)
T ss_dssp TC-CSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSSCCEEC-----
T ss_pred cC-CcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccCCCcCC-----
Confidence 75 99999999999874 1 1111 2334567788888888999999999999999976544 22344
Q ss_pred hhhchhhhhhceeEEEecCcccccCCCC-CCeEEEEEeeccCCCcce---EEEEEEcCccce
Q psy2891 392 RESGAIEQDADVILFIYRDEVYNQNSAD-KGIAEIIVSKQRNGPIGN---IRLTFSGQYTKF 449 (452)
Q Consensus 392 ~~S~~ie~~aD~vl~l~r~~~~~~~~~~-~~~~~l~i~KnR~G~~g~---~~l~f~~~~~~f 449 (452)
.|+.+|+++||++++|+|++++.+.++. .+.+++++.|||+|++|. +.+.|.....+|
T Consensus 534 sGg~ale~~ADv~l~L~R~~~~~~g~~~~g~~~~v~V~KnR~gp~g~~~~f~I~~~~Gi~~~ 595 (2050)
T 3cmu_A 534 TGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFY 595 (2050)
T ss_dssp SSHHHHHHHEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCSCCEEEEEEETTTEECHH
T ss_pred CCcchhhhhCCEEEEEEecccccCCccccCcEEEEEEEecCCCCCCceEEEEEEeCCCcccc
Confidence 4677899999999999999865322111 135789999999999885 344444444433
No 14
>3gxv_A Replicative DNA helicase; hexameric helicase, primase, replication, ATP-binding, autocatalytic cleavage, DNA replication; 2.20A {Helicobacter pylori} PDB: 3gxv_D 3gxv_C
Probab=99.94 E-value=3.8e-27 Score=194.68 Aligned_cols=119 Identities=24% Similarity=0.352 Sum_probs=112.1
Q ss_pred cCCCCCCHHHHHHHHHHHhcCcccHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCCcccccCH
Q psy2891 12 FRVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITVFDSLSNTGNAEEIGGL 91 (452)
Q Consensus 12 ~~~~~~~~~aE~~vLg~ll~~~~~~~~i~~~L~p~~F~~~~h~~If~~i~~l~~~~~~id~~tv~~~l~~~~~~~~~gg~ 91 (452)
++.+|+|++||++|||+||.+|+.++++.+.|+|+|||.|.||.||++|.+|+.+|+|+|++||.++|++.+.++.
T Consensus 4 ~~~~p~~~eAEqaVLGalLld~~~~~~v~~~L~~edFy~~~H~~If~ai~~L~~~~~piD~vtl~~~L~~~~~l~~---- 79 (123)
T 3gxv_A 4 LKHLQQLQNIERIVLSGIVLANHKIEEVHSVLEPSDFYYPPNGLFFEIALKLHEEDCPIDENFIRQKMPKDKQIKE---- 79 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSGGGHHHHHTTCCGGGCSSHHHHHHHHHHHHHHHTTCCCSHHHHHHTSCSSSCCCH----
T ss_pred cccCCCCHHHHHHHHHHHHcCHHHHHHHHhhCCHHHCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCchhH----
Confidence 3567999999999999999999999999999999999999999999999999999999999999999999887764
Q ss_pred HHHHHHHhcCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2891 92 SYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQAF 135 (452)
Q Consensus 92 ~~l~~l~~~~~~~~n~~~y~~~l~~~~~~R~l~~~~~~~~~~~~ 135 (452)
+||.+|+. +|+++|+++|+++|++++.+|+++..+.++.+.++
T Consensus 80 ~yL~~L~~-~ps~ani~~Ya~iV~e~s~~R~li~~~~~i~~~~~ 122 (123)
T 3gxv_A 80 EDLVAIFA-ASPIDNIEAYVEEIKNASIKRKLFGLANTIREQAH 122 (123)
T ss_dssp HHHHHHHT-SCCCSCTHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 89999988 99999999999999999999999999999887653
No 15
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=99.94 E-value=4.5e-26 Score=222.02 Aligned_cols=213 Identities=16% Similarity=0.188 Sum_probs=155.9
Q ss_pred CccccccCcccccccc-CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHh-----------CC----CcEEEEeCCCC--
Q psy2891 193 DVTGISTGFFELDKIT-SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE-----------NK----LPVAIFSMEMS-- 254 (452)
Q Consensus 193 ~~~~i~tg~~~LD~~~-gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~-----------~g----~~vl~~s~E~~-- 254 (452)
...+++||++.||.++ ||+++|++++|+|+||+|||+|+++++.+++.. .| .+|+||++|++
T Consensus 76 ~~~~i~TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~ 155 (322)
T 2i1q_A 76 TVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFR 155 (322)
T ss_dssp TCCEECCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCC
T ss_pred cCCeecCCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCC
Confidence 3458999999999996 799999999999999999999999999986431 24 78999999998
Q ss_pred HHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHH---HHHHHHHHHHHHcCCccEEEE
Q psy2891 255 GIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVI---ELRANSRRLSRQCGKIGVIII 331 (452)
Q Consensus 255 ~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~---~i~~~i~~~~~~~~~~~~vvI 331 (452)
++++..++.. .|++... + + .++++.+. .+.+ ++...+..+..++.++++|||
T Consensus 156 ~~~l~~~~~~--~g~~~~~-------------~------~--~~l~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~lvVI 210 (322)
T 2i1q_A 156 PERIMQMAEH--AGIDGQT-------------V------L--DNTFVARA--YNSDMQMLFAEKIEDLIQEGNNIKLVVI 210 (322)
T ss_dssp HHHHHHHHHH--HTCCHHH-------------H------H--HTEEEEEC--SSHHHHHHHHHTHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHH--cCCCHHH-------------H------h--cCEEEEeC--CCHHHHHHHHHHHHHHHhhccCccEEEE
Confidence 7888877543 3443221 1 1 14666543 2344 355556666666224999999
Q ss_pred cCcchhccCC-C--CC--CHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhc--CCCCCCchhhhhhchhhhhhcee
Q psy2891 332 DYLQLMSANS-R--GE--NRATEISEISRNLKGLAKEINCPILALSQLNRSLEQR--QNKRPIMSDLRESGAIEQDADVI 404 (452)
Q Consensus 332 D~l~~i~~~~-~--~~--~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r--~~~~p~l~dl~~S~~ie~~aD~v 404 (452)
|+++.+.... . +. ++.+.+.++++.|+.+|+++|++||+++|+++..+.+ ...+| .++..+++.||++
T Consensus 211 Dsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~~~-----~g~~~~~~~~d~~ 285 (322)
T 2i1q_A 211 DSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQA-----IGGHIVGHAATFR 285 (322)
T ss_dssp ECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------CCEE-----SSHHHHHHHCSEE
T ss_pred ECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCCCcCC-----CCcHHHHhcCcEE
Confidence 9999886421 1 11 2345689999999999999999999999999865432 11223 3456799999999
Q ss_pred EEEecCcccccCCCCCCeEEEEEeeccCCCcceEEEEEE
Q psy2891 405 LFIYRDEVYNQNSADKGIAEIIVSKQRNGPIGNIRLTFS 443 (452)
Q Consensus 405 l~l~r~~~~~~~~~~~~~~~l~i~KnR~G~~g~~~l~f~ 443 (452)
+.|+|.+. ..+.+.+.|||+|+.|.+.|...
T Consensus 286 i~l~~~~~--------~~r~~~v~k~~~~p~~~~~f~I~ 316 (322)
T 2i1q_A 286 FFVRKGKG--------DKRVAKLYDSPHLPDAEAIFRIT 316 (322)
T ss_dssp EEEEECST--------TEEEEEEEECSSSCCEEEEEEEE
T ss_pred EEEEecCC--------CeEEEEEEECCCCCCeEEEEEEe
Confidence 99998641 24689999999999998765544
No 16
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=99.93 E-value=1.6e-25 Score=218.03 Aligned_cols=212 Identities=14% Similarity=0.168 Sum_probs=145.6
Q ss_pred CccccccCcccccccc-CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhC-----CCcEEEEeCCCC--HHHHHHHHHH
Q psy2891 193 DVTGISTGFFELDKIT-SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIEN-----KLPVAIFSMEMS--GIQLAMRMLG 264 (452)
Q Consensus 193 ~~~~i~tg~~~LD~~~-gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~-----g~~vl~~s~E~~--~~~i~~R~~a 264 (452)
...+++||++.||.++ ||+++|++++|+|+||+|||+|+++++.+++... +.+|+||++|++ ++++..++..
T Consensus 85 ~~~~i~TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~ 164 (324)
T 2z43_A 85 NVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKA 164 (324)
T ss_dssp SCCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred cCCcccCCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999996 7999999999999999999999999999876421 679999999997 7888777532
Q ss_pred HhCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHH---HHHHHHHHHHHH-cCCccEEEEcCcchhccC
Q psy2891 265 SVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVI---ELRANSRRLSRQ-CGKIGVIIIDYLQLMSAN 340 (452)
Q Consensus 265 ~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~---~i~~~i~~~~~~-~~~~~~vvID~l~~i~~~ 340 (452)
.|++... + + .++++.+. .+.+ ++...++.+.++ . ++++||||+++.+...
T Consensus 165 --~g~~~~~-------------~------~--~~l~~~~~--~~~~~~~~~l~~l~~~~~~~~-~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 165 --LGLDIDN-------------V------M--NNIYYIRA--INTDHQIAIVDDLQELVSKDP-SIKLIVVDSVTSHFRA 218 (324)
T ss_dssp --TTCCHHH-------------H------H--HTEEEEEC--CSHHHHHHHHHHHHHHHHHCT-TEEEEEETTTTHHHHH
T ss_pred --hCCCHHH-------------H------h--ccEEEEeC--CCHHHHHHHHHHHHHHHHhcc-CCCEEEEeCcHHHhhh
Confidence 3443221 1 1 14566543 2344 355566666666 5 4999999999988642
Q ss_pred C---CCC--CHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhc--CCCCCCchhhhhhchhhhhhceeEEEecCccc
Q psy2891 341 S---RGE--NRATEISEISRNLKGLAKEINCPILALSQLNRSLEQR--QNKRPIMSDLRESGAIEQDADVILFIYRDEVY 413 (452)
Q Consensus 341 ~---~~~--~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r--~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~ 413 (452)
. ++. ++.+.+.++++.|+.+|+++|++||+++|+++..+.+ ...+| .++..+++.||+++.|+|.+.
T Consensus 219 ~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~~~~~-----~gg~~l~~~~d~~l~l~r~~~- 292 (324)
T 2z43_A 219 EYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARPDMFYGDPTVA-----VGGHTLYHVPGIRIQLKKSRG- 292 (324)
T ss_dssp HSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-----------------------------CEEEEEEECST-
T ss_pred hhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeecCCCcCCCCCCC-----CchHHHHhhCcEEEEEEEcCC-
Confidence 1 111 2345689999999999999999999999999865432 11233 345679999999999998641
Q ss_pred ccCCCCCCeEEEEEeeccCCCcceEEEEEE
Q psy2891 414 NQNSADKGIAEIIVSKQRNGPIGNIRLTFS 443 (452)
Q Consensus 414 ~~~~~~~~~~~l~i~KnR~G~~g~~~l~f~ 443 (452)
..+.+.+.|||+|+.|.+.|...
T Consensus 293 -------~~r~~~v~k~~~~p~~~~~f~I~ 315 (324)
T 2z43_A 293 -------NRRIARVVDAPHLPEGEVVFALT 315 (324)
T ss_dssp -------TEEEEEEEECSSSCCEEEEEEEE
T ss_pred -------CeEEEEEEECCCCCceEEEEEEe
Confidence 24689999999999988766554
No 17
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.93 E-value=1.8e-25 Score=252.39 Aligned_cols=227 Identities=21% Similarity=0.218 Sum_probs=172.2
Q ss_pred HHHHHHHHHHHHHhCCC-------CCCCccccccCcccccccc--CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCC
Q psy2891 173 LLNRVIKRINKLHNRGT-------NDNDVTGISTGFFELDKIT--SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENK 243 (452)
Q Consensus 173 ~~~~~~~~i~~~~~~~~-------~~~~~~~i~tg~~~LD~~~--gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g 243 (452)
+++.++..+++.+..+. ......++|||++.||.++ ||+++|++++|+|+||+|||+|++|++.+++. .|
T Consensus 333 ~l~~a~~~i~~~fg~~~~~~l~~~~~~~~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~-~G 411 (1706)
T 3cmw_A 333 ALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EG 411 (1706)
T ss_dssp HHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHhCCCcceeccccccccCceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-hC
Confidence 44556666665543210 0024568999999999985 69999999999999999999999999999985 68
Q ss_pred CcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHc
Q psy2891 244 LPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQC 323 (452)
Q Consensus 244 ~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~ 323 (452)
.+|+|||+||+..++. +...|++..+ +++.+. .+.+++.+.++++.+..
T Consensus 412 ~~vlyis~E~s~~~~~----a~~lGvd~~~-------------------------L~i~~~--~~~e~~l~~l~~lv~~~ 460 (1706)
T 3cmw_A 412 KTCAFIDAEHALDPIY----ARKLGVDIDN-------------------------LLCSQP--DTGEQALEICDALARSG 460 (1706)
T ss_dssp CCEEEECTTSCCCHHH----HHHTTCCGGG-------------------------CEEECC--SSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEccCchHHHH----HHHcCCCHHH-------------------------eEEcCC--CCHHHHHHHHHHHHHhc
Confidence 9999999999998874 3345665432 333322 35788888888888777
Q ss_pred CCccEEEEcCcchhccC-----CCCC----CHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhc--CCCCCCchhhh
Q psy2891 324 GKIGVIIIDYLQLMSAN-----SRGE----NRATEISEISRNLKGLAKEINCPILALSQLNRSLEQR--QNKRPIMSDLR 392 (452)
Q Consensus 324 ~~~~~vvID~l~~i~~~-----~~~~----~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r--~~~~p~l~dl~ 392 (452)
+ +++|||||++.+... ..+. .+...+..+++.|+.+|+++||+||+++|+++..+.+ .+++| .
T Consensus 461 ~-~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p-----~ 534 (1706)
T 3cmw_A 461 A-VDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETT-----T 534 (1706)
T ss_dssp C-CSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEE-----S
T ss_pred C-CCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccC-----C
Confidence 5 999999999998741 1111 2445678899999999999999999999999976544 22333 3
Q ss_pred hhchhhhhhceeEEEecCcccccCCC-CCCeEEEEEeeccCCCcce
Q psy2891 393 ESGAIEQDADVILFIYRDEVYNQNSA-DKGIAEIIVSKQRNGPIGN 437 (452)
Q Consensus 393 ~S~~ie~~aD~vl~l~r~~~~~~~~~-~~~~~~l~i~KnR~G~~g~ 437 (452)
+++.++++||++++++|.+++.+.+. ..+.+++++.|||+|+++.
T Consensus 535 gg~ale~~ADv~L~L~R~~~~~~g~~~~~~~~~l~V~KnR~gp~~~ 580 (1706)
T 3cmw_A 535 GGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFK 580 (1706)
T ss_dssp SCSHHHHHEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCSCC
T ss_pred CCcceeeeCCEEEEEEeccccccCccccCcEEEEEEEecCCCCCCC
Confidence 57899999999999999876533211 1235789999999999886
No 18
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.93 E-value=7e-25 Score=204.86 Aligned_cols=220 Identities=20% Similarity=0.230 Sum_probs=156.2
Q ss_pred cccccCccccccc-cCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccc
Q psy2891 195 TGISTGFFELDKI-TSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHK 273 (452)
Q Consensus 195 ~~i~tg~~~LD~~-~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~ 273 (452)
.+++||++.||++ .||+++|++++|+|+||+|||+|+++++.+.+. .|.+|+|+++|++..++..|+. ..|++...
T Consensus 3 ~~i~tG~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~-~~~~v~~~~~e~~~~~~~~~~~--~~g~~~~~ 79 (247)
T 2dr3_A 3 RRVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLK-MGEPGIYVALEEHPVQVRQNMA--QFGWDVKP 79 (247)
T ss_dssp CEECCCCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHH-TTCCEEEEESSSCHHHHHHHHH--TTTCCCHH
T ss_pred ccccCCchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEEccCCHHHHHHHHH--HcCCCHHH
Confidence 4799999999998 689999999999999999999999999999975 6889999999999999988875 34555433
Q ss_pred cc-cCCCCcch--HHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHH
Q psy2891 274 LR-TGRLSSDD--WPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEI 350 (452)
Q Consensus 274 i~-~g~l~~~~--~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~ 350 (452)
+. .+.+...+ +..+ ..+...+.++.+. ..++.++...++++..+++ +++||||+++.+..+. . ...
T Consensus 80 ~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~-~~~vviD~~~~l~~~~--~---~~~ 148 (247)
T 2dr3_A 80 YEEKGMFAMVDAFTAGI----GKSKEYEKYIVHD-LTDIREFIEVLRQAIRDIN-AKRVVVDSVTTLYINK--P---AMA 148 (247)
T ss_dssp HHHHTSEEEEECSTTTT----CC--CCCSCBCSC-CSSHHHHHHHHHHHHHHHT-CCEEEEETSGGGTTTC--G---GGH
T ss_pred HhhCCcEEEEecchhhc----ccccccccccccC-ccCHHHHHHHHHHHHHHhC-CCEEEECCchHhhcCC--H---HHH
Confidence 21 12211111 0000 0001112333322 3567788888888877776 9999999999987422 1 124
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccccCCCCCCeEEEEEeec
Q psy2891 351 SEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQ 430 (452)
Q Consensus 351 ~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~~~~~~~~l~i~Kn 430 (452)
..++..|+.+++++|++||+++|.++.. +..++| .+++.||.|+.|++++.. ....+.+.|.|+
T Consensus 149 ~~~l~~l~~~~~~~~~~vi~~~h~~~~~--~~~~~~---------~~~~~~D~vi~L~~~~~~-----~~~~r~l~v~K~ 212 (247)
T 2dr3_A 149 RSIILQLKRVLAGTGCTSIFVSQVSVGE--RGFGGP---------GVEHGVDGIIRLDLDEID-----GELKRSLIVWKM 212 (247)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECC------CCC-C---------CHHHHSSEEEEEEEEEET-----TEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCCc--cccccc---------ccceeEEEEEEEEEEccC-----CeeEEEEEEEEC
Confidence 4667888999999999999999999853 222222 488999999999987542 124689999999
Q ss_pred cCCCcce--EEEEEEc
Q psy2891 431 RNGPIGN--IRLTFSG 444 (452)
Q Consensus 431 R~G~~g~--~~l~f~~ 444 (452)
|+|+.+. ..|....
T Consensus 213 R~~~~~~~~~~f~i~~ 228 (247)
T 2dr3_A 213 RGTSHSMRRHPFDITD 228 (247)
T ss_dssp TTSCCCCBCEEEEEET
T ss_pred CCCCCCCceEEEEEcC
Confidence 9998763 4555443
No 19
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=99.93 E-value=4.7e-25 Score=216.19 Aligned_cols=214 Identities=14% Similarity=0.170 Sum_probs=152.2
Q ss_pred ccccccCcccccccc-CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHh-----CCCcEEEEeCCCC--HHHHHHHHHHH
Q psy2891 194 VTGISTGFFELDKIT-SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE-----NKLPVAIFSMEMS--GIQLAMRMLGS 265 (452)
Q Consensus 194 ~~~i~tg~~~LD~~~-gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~-----~g~~vl~~s~E~~--~~~i~~R~~a~ 265 (452)
..+++||++.||.++ ||+++|++++|+|+||+|||+|+++++.+++.. .+.+|+||++|++ ++++..++..
T Consensus 101 ~~~i~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~- 179 (343)
T 1v5w_A 101 VFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADR- 179 (343)
T ss_dssp CCCBCCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHH-
T ss_pred cceeecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH-
Confidence 458999999999996 799999999999999999999999999987542 3679999999996 7777777543
Q ss_pred hCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCC-CCHHHHHHHHHHHHHH--cCCccEEEEcCcchhccCC-
Q psy2891 266 VGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPS-LNVIELRANSRRLSRQ--CGKIGVIIIDYLQLMSANS- 341 (452)
Q Consensus 266 ~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~-~t~~~i~~~i~~~~~~--~~~~~~vvID~l~~i~~~~- 341 (452)
.|++... + +. ++++.+... ..+.++...++++..+ . ++++||||+++.+....
T Consensus 180 -~g~~~~~-------------~------l~--~l~~~~~~~~e~~~~ll~~l~~~i~~~~~-~~~lvVIDsl~~l~~~~~ 236 (343)
T 1v5w_A 180 -FNVDHDA-------------V------LD--NVLYARAYTSEHQMELLDYVAAKFHEEAG-IFKLLIIDSIMALFRVDF 236 (343)
T ss_dssp -TTCCHHH-------------H------HH--TEEEEECCSTTHHHHHHHHHHHHHHHSCS-SEEEEEEETSGGGHHHHC
T ss_pred -cCCCHHH-------------H------Hh--ceeEeecCCHHHHHHHHHHHHHHHHhcCC-CccEEEEechHHHHHHHh
Confidence 3443211 1 11 456554322 2233555566677766 5 49999999999887431
Q ss_pred C--CC--CHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCc--hhhh--hhchhhhhhceeEEEecCccc
Q psy2891 342 R--GE--NRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIM--SDLR--ESGAIEQDADVILFIYRDEVY 413 (452)
Q Consensus 342 ~--~~--~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l--~dl~--~S~~ie~~aD~vl~l~r~~~~ 413 (452)
. +. ++.+.+..+++.|+.+|+++|++||+++|+++..+.+ +.. ++.+ ++..+++.||++++|+|.+
T Consensus 237 ~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~----~~~~g~~~~~~gg~~i~~~ad~~l~l~r~~-- 310 (343)
T 1v5w_A 237 SGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGAT----MTFQADPKKPIGGHILAHASTTRISLRKGR-- 310 (343)
T ss_dssp CGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-----------------------CCTTTTSSSEEEEEEESS--
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeeceecCCCc----cccCCCCCcCCchHHHHHhCCEEEEEEEcC--
Confidence 1 11 2344689999999999999999999999999876432 111 1222 3447999999999999864
Q ss_pred ccCCCCCCeEEEEEeeccCCCcceEEEEEE
Q psy2891 414 NQNSADKGIAEIIVSKQRNGPIGNIRLTFS 443 (452)
Q Consensus 414 ~~~~~~~~~~~l~i~KnR~G~~g~~~l~f~ 443 (452)
...+.+.+.|||+|+.|.+.|...
T Consensus 311 ------~~~r~~~v~K~r~~p~~~~~f~I~ 334 (343)
T 1v5w_A 311 ------GELRIAKIYDSPEMPENEATFAIT 334 (343)
T ss_dssp ------TTEEEEEEEECTTCCSSCEEEEEE
T ss_pred ------CCEEEEEEEECCCCCCeeEEEEEe
Confidence 125789999999999998766554
No 20
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.92 E-value=3.9e-24 Score=196.30 Aligned_cols=206 Identities=18% Similarity=0.253 Sum_probs=151.0
Q ss_pred ccccCcccccccc-CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC--CHHHHHHHHHHHhCCCCcc
Q psy2891 196 GISTGFFELDKIT-SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM--SGIQLAMRMLGSVGKLDQH 272 (452)
Q Consensus 196 ~i~tg~~~LD~~~-gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~--~~~~i~~R~~a~~~~i~~~ 272 (452)
.++||++.||+++ ||+++|++++|.|+||+|||+|+.+++. . .+.+|+|++.|+ +..++..... ..+++
T Consensus 1 ri~tG~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~--~~~~v~~i~~~~~~~~~~~~~~~~--~~~~~-- 72 (220)
T 2cvh_A 1 MLSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L--SGKKVAYVDTEGGFSPERLVQMAE--TRGLN-- 72 (220)
T ss_dssp CBCCSCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H--HCSEEEEEESSCCCCHHHHHHHHH--TTTCC--
T ss_pred CcccCcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H--cCCcEEEEECCCCCCHHHHHHHHH--hcCCC--
Confidence 3799999999996 6999999999999999999999999998 2 478999999999 7766654321 12221
Q ss_pred ccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCC-HHHHHHHHHHHHHHcCCccEEEEcCcchhccCC-CCCCHHHHH
Q psy2891 273 KLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLN-VIELRANSRRLSRQCGKIGVIIIDYLQLMSANS-RGENRATEI 350 (452)
Q Consensus 273 ~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t-~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~-~~~~~~~~~ 350 (452)
.+++ + .++++.+..... ..++.+.++.+..+ + +++||||+++.+.... ...++...+
T Consensus 73 --------~~~~---------~--~~~~~~~~~~~~~~~~~~~~~~~l~~~-~-~~lliiD~~~~~l~~~~~~~~~~~~~ 131 (220)
T 2cvh_A 73 --------PEEA---------L--SRFILFTPSDFKEQRRVIGSLKKTVDS-N-FALVVVDSITAHYRAEENRSGLIAEL 131 (220)
T ss_dssp --------HHHH---------H--HHEEEECCTTTSHHHHHHHHHHHHCCT-T-EEEEEEECCCCCTTGGGGSSTTHHHH
T ss_pred --------hHHH---------h--hcEEEEecCCHHHHHHHHHHHHHHhhc-C-CCEEEEcCcHHHhhhcCchHHHHHHH
Confidence 1111 1 135555443322 23344455555443 4 9999999999875322 223456778
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccccCCCCCCeEEEEEeec
Q psy2891 351 SEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQ 430 (452)
Q Consensus 351 ~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~~~~~~~~l~i~Kn 430 (452)
..+++.|+.++++++++||+++|.++..+. .+.+|.. |..+++.||.+++|++.+. .+.+.+.+.|+
T Consensus 132 ~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~-~~~~p~~-----~~~~~~~~d~vi~l~~~~~-------~~~r~l~v~K~ 198 (220)
T 2cvh_A 132 SRQLQVLLWIARKHNIPVIVINQVHFDSRT-EMTKPVA-----EQTLGYRCKDILRLDKLPK-------PGLRVAVLERH 198 (220)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECSSSSCTT-SSCCSCC-----CHHHHHTSSEEEEEEECSS-------TTEEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCEEEEEeeEEEcCCC-CccccCC-----CcceeecCcEEEEEEEecC-------CCEEEEEEEeC
Confidence 899999999999999999999999886543 2455643 4579999999999998742 24689999999
Q ss_pred cCCCcce-EEEEEE
Q psy2891 431 RNGPIGN-IRLTFS 443 (452)
Q Consensus 431 R~G~~g~-~~l~f~ 443 (452)
|+|+.|. +.|...
T Consensus 199 r~~~~~~~~~f~I~ 212 (220)
T 2cvh_A 199 RFRPEGLMAYFRIT 212 (220)
T ss_dssp SSSCTTCEEEEEEE
T ss_pred CCCCCCceEEEEEe
Confidence 9999887 566654
No 21
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.92 E-value=2.5e-23 Score=203.75 Aligned_cols=212 Identities=18% Similarity=0.198 Sum_probs=154.1
Q ss_pred CccccccCcccccccc--CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCC
Q psy2891 193 DVTGISTGFFELDKIT--SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLD 270 (452)
Q Consensus 193 ~~~~i~tg~~~LD~~~--gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~ 270 (452)
...+++||++.||.++ ||+++|++++|+|+||+|||+|+++++.+++. .|.+|+|+++|++..+.. +...|++
T Consensus 38 ~~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~-~g~~vlyi~~E~~~~~~~----a~~lG~~ 112 (349)
T 2zr9_A 38 PISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA-AGGIAAFIDAEHALDPEY----AKKLGVD 112 (349)
T ss_dssp CCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCCCCHHH----HHHTTCC
T ss_pred cCCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEECCCCcCHHH----HHHcCCC
Confidence 4568999999999985 59999999999999999999999999999975 688999999999876653 2234554
Q ss_pred ccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccC----CC-CC-
Q psy2891 271 QHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSAN----SR-GE- 344 (452)
Q Consensus 271 ~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~----~~-~~- 344 (452)
.. ++++.+ ..+.+++...++.+.+..+ +++||||+++.+... .. ++
T Consensus 113 ~~-------------------------~l~i~~--~~~~e~~l~~~~~l~~~~~-~~lIVIDsl~~l~~~~e~~~~~gd~ 164 (349)
T 2zr9_A 113 TD-------------------------SLLVSQ--PDTGEQALEIADMLVRSGA-LDIIVIDSVAALVPRAEIEGEMGDS 164 (349)
T ss_dssp GG-------------------------GCEEEC--CSSHHHHHHHHHHHHTTTC-CSEEEEECGGGCCCHHHHTTC----
T ss_pred HH-------------------------HeEEec--CCCHHHHHHHHHHHHhcCC-CCEEEEcChHhhcchhhhccccccc
Confidence 32 233433 2367888888887776664 999999999998731 10 01
Q ss_pred ---CHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcC--CCCCCchhhhhhchhhhhhceeEEEecCcccccCCC-
Q psy2891 345 ---NRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQ--NKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSA- 418 (452)
Q Consensus 345 ---~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~--~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~~- 418 (452)
.....+..+++.|+.+++++|++||+++|+++..+... ...| .++..+++.||+++.++|.+.+.....
T Consensus 165 ~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~-----~gg~~l~~~ad~~l~lrr~~~~k~g~~~ 239 (349)
T 2zr9_A 165 HVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETT-----TGGKALKFYASVRLDVRRIETLKDGTDA 239 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CC-----SSHHHHHHHCSEEEEEEEEEEECSSSSC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCccc-----CCchHhhhccceEEEEEEeeeeecCccc
Confidence 12235678889999999999999999999997543221 1223 346789999999999999765432111
Q ss_pred CCCeEEEEEeeccCCC-cceEEEEE
Q psy2891 419 DKGIAEIIVSKQRNGP-IGNIRLTF 442 (452)
Q Consensus 419 ~~~~~~l~i~KnR~G~-~g~~~l~f 442 (452)
..+.+.+.+.|||.++ .|...|..
T Consensus 240 ~g~~~~~~i~K~~~~p~~~~~~fdi 264 (349)
T 2zr9_A 240 VGNRTRVKVVKNKVSPPFKQAEFDI 264 (349)
T ss_dssp CEEEEEEEEEEESSSCCCCEEEEEE
T ss_pred cCCEEEEEeCCCccCCCCceEEEEE
Confidence 1246899999999998 55555544
No 22
>1b79_A DNAB helicase; hexamer, DNA replication, hydrolase; 2.30A {Escherichia coli} SCOP: a.81.1.1 PDB: 1jwe_A
Probab=99.92 E-value=3.2e-25 Score=182.17 Aligned_cols=105 Identities=52% Similarity=0.916 Sum_probs=99.9
Q ss_pred CCCCCCHHHHHHHHHHHhcCcccHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCCcccccCHH
Q psy2891 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITVFDSLSNTGNAEEIGGLS 92 (452)
Q Consensus 13 ~~~~~~~~aE~~vLg~ll~~~~~~~~i~~~L~p~~F~~~~h~~If~~i~~l~~~~~~id~~tv~~~l~~~~~~~~~gg~~ 92 (452)
+.+|++++||++|||+||.+|+.+.++.+.|+|+|||.+.||.||++|.+++.+|+|+|++||..+|++.+.++.+||.+
T Consensus 15 ~~~P~~~eAEqaVLGalL~d~~~~~~v~~~L~~edFy~~~H~~If~ai~~L~~~g~piD~vtv~~~L~~~~~l~~~GG~~ 94 (119)
T 1b79_A 15 KVPPHSIEAEQSVLGGLMLDNERWDDVAERVVADDFYTRPHRHIFTEMARLQESGSPIDLITLAESLERQGQLDSVGGFA 94 (119)
T ss_dssp --CCCHHHHHHHHHHHHHHCGGGHHHHHTTCCGGGSSSHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHTTTTHHHHTHHH
T ss_pred cCCCCcHHHHHHHHHHHHcChHHHHHHHhhCCHHHCCcHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhccCchhhcCcHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCChHhHHHHHHHHHHH
Q psy2891 93 YLNSLAQNIPSAANIRRYAEIVRDR 117 (452)
Q Consensus 93 ~l~~l~~~~~~~~n~~~y~~~l~~~ 117 (452)
||.+|++.+|+++|+.+|+++|+++
T Consensus 95 yL~~L~~~~ps~ani~~Ya~iV~ek 119 (119)
T 1b79_A 95 YLAELSKNTPSAANISAYADIVRER 119 (119)
T ss_dssp HHHHHHHHSCSSSCHHHHHHHHHC-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 9999999999999999999999863
No 23
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.91 E-value=2.4e-23 Score=198.52 Aligned_cols=231 Identities=14% Similarity=0.154 Sum_probs=147.0
Q ss_pred cccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHh---------CCCcEEEEeCCCCHHHHHHHHHHH
Q psy2891 195 TGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE---------NKLPVAIFSMEMSGIQLAMRMLGS 265 (452)
Q Consensus 195 ~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~---------~g~~vl~~s~E~~~~~i~~R~~a~ 265 (452)
..++||++.||.+++|+++|++++|.|+||+|||+|+++++..++.+ .+.+|+|++.|++..++..|+.+.
T Consensus 11 ~~i~tg~~~ld~~lggl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~ 90 (279)
T 1nlf_A 11 EAFAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHAL 90 (279)
T ss_dssp HHHHSCCCCCCEEETTEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHH
T ss_pred HHhcCCCCChheeECCccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999977531 146899999999998888787653
Q ss_pred hCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcC-----CCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccC
Q psy2891 266 VGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDET-----PSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSAN 340 (452)
Q Consensus 266 ~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~-----~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~ 340 (452)
...+ .... .....+ .+.+.+. ..++..+ ...++.+.. + +++||||+++.+...
T Consensus 91 g~~~----------~~~~---~~~~~~-----~l~l~~~~~~~~~~ls~g~-~~~i~~l~~--~-~~livlDe~~~~~~~ 148 (279)
T 1nlf_A 91 GAHL----------SAEE---RQAVAD-----GLLIQPLIGSLPNIMAPEW-FDGLKRAAE--G-RRLMVLDTLRRFHIE 148 (279)
T ss_dssp HTTS----------CHHH---HHHHHH-----HEEECCCTTSCCCTTSHHH-HHHHHHHHT--T-CSEEEEECGGGGCCS
T ss_pred Hhhc----------Chhh---hhhccC-----ceEEeecCCCCcccCCHHH-HHHHHHhcC--C-CCEEEECCHHHhcCC
Confidence 2211 1111 111122 2233221 1233333 334444432 3 999999999997654
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccc------
Q psy2891 341 SRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYN------ 414 (452)
Q Consensus 341 ~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~------ 414 (452)
. .+....+..+++.|+.++++.|++||+++|.++... ..+..+..++.+||+.+...+..+..+.+.....
T Consensus 149 d--~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~~-~~g~~~~~~~~~g~~~l~d~v~~~~~~~~~~~~~~~~~gi 225 (279)
T 1nlf_A 149 E--ENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGAA-MMGAGDQQQASRGSSVLVDNIRWQSYLSSMTSAEAEEWGV 225 (279)
T ss_dssp C--TTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC---------------------CTGGGCSCEEEEEECCHHHHHHTTC
T ss_pred C--cCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCccc-ccCCchhhhhccchhhhccchhhhhhccCCCHHHHHHhCC
Confidence 3 344556788999999999999999999999998653 2344566788899999976555555555443110
Q ss_pred cCCCCCCeEEEEEeeccCCCcceEEEEEEcCcccee
Q psy2891 415 QNSADKGIAEIIVSKQRNGPIGNIRLTFSGQYTKFN 450 (452)
Q Consensus 415 ~~~~~~~~~~l~i~KnR~G~~g~~~l~f~~~~~~f~ 450 (452)
.++...+.+++.+.|||+|++|........+++.|.
T Consensus 226 ~~~~~~~~~~~~v~K~~~~~~~~~~~~~~~~~G~l~ 261 (279)
T 1nlf_A 226 DDDQRRFFVRFGVSKANYGAPFADRWFRRHDGGVLK 261 (279)
T ss_dssp CTTSGGGEEEEEEEECSSSSCCCCEEEEECGGGCEE
T ss_pred ChhhcCcEEEeeeccccCCCCCCceEEEEcCCeeEe
Confidence 011123478899999999999986544444777775
No 24
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.89 E-value=2.2e-22 Score=199.79 Aligned_cols=212 Identities=14% Similarity=0.190 Sum_probs=142.4
Q ss_pred ccccccCcccccccc-CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHh-----CCCcEEEEeCCCCHHHHHHHHHHHhC
Q psy2891 194 VTGISTGFFELDKIT-SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE-----NKLPVAIFSMEMSGIQLAMRMLGSVG 267 (452)
Q Consensus 194 ~~~i~tg~~~LD~~~-gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~-----~g~~vl~~s~E~~~~~i~~R~~a~~~ 267 (452)
..+++||++.||+++ ||+++|+++.|+|+||+|||+|+.+++...+.. .+.+|+||+.|++......+.++...
T Consensus 157 ~~~i~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~ 236 (400)
T 3lda_A 157 LICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRF 236 (400)
T ss_dssp SCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CCccccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHc
Confidence 458999999999985 899999999999999999999999999887541 35679999999863322222233334
Q ss_pred CCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHH---HHHHHHHHHHHHcCCccEEEEcCcchhccCC-CC
Q psy2891 268 KLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVI---ELRANSRRLSRQCGKIGVIIIDYLQLMSANS-RG 343 (452)
Q Consensus 268 ~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~---~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~-~~ 343 (452)
|++...+ +. ++++... .+.+ ++...+..+....+ +++||||+++.+.... .+
T Consensus 237 gl~~~~v-------------------le--ni~~~~~--~~~~~~~~~l~~~~~~l~~~~-~~llVIDs~t~~~~~~~sg 292 (400)
T 3lda_A 237 GLDPDDA-------------------LN--NVAYARA--YNADHQLRLLDAAAQMMSESR-FSLIVVDSVMALYRTDFSG 292 (400)
T ss_dssp TCCHHHH-------------------HH--TEEEEEC--CSHHHHHHHHHHHHHHHHHSC-EEEEEEETGGGGCC-----
T ss_pred CCChHhH-------------------hh--cEEEecc--CChHHHHHHHHHHHHHHHhcC-CceEEecchhhhCchhhcC
Confidence 4432211 11 3444432 2333 33344444555564 9999999999877542 11
Q ss_pred ----CCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhc-----CCCCCCchhhhhhchhhhhhceeEEEecCcccc
Q psy2891 344 ----ENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQR-----QNKRPIMSDLRESGAIEQDADVILFIYRDEVYN 414 (452)
Q Consensus 344 ----~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r-----~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~ 414 (452)
..+...+..+++.|+.+++++|++||+++|+.+..+.+ ...+| .++..+++.+|++++|++...
T Consensus 293 ~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p-----~gg~~l~~~ad~vl~L~~~~g-- 365 (400)
T 3lda_A 293 RGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKP-----IGGNIMAYSSTTRLGFKKGKG-- 365 (400)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-------------------------CHHHHHCSEEEEEEECST--
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccC-----CchhHHHHhcceEEEEEecCC--
Confidence 12234458899999999999999999999996543221 11223 356789999999999988631
Q ss_pred cCCCCCCeEEEEEeeccCCCcceEEEEE
Q psy2891 415 QNSADKGIAEIIVSKQRNGPIGNIRLTF 442 (452)
Q Consensus 415 ~~~~~~~~~~l~i~KnR~G~~g~~~l~f 442 (452)
..+.+.+.|+|+++.+...|..
T Consensus 366 ------~~R~l~v~K~R~~p~~e~~F~I 387 (400)
T 3lda_A 366 ------CQRLCKVVDSPCLPEAECVFAI 387 (400)
T ss_dssp ------TEEEEEEEECSSSCSCEEEEEE
T ss_pred ------CcEEEEEEcCCCCCCCceEEEE
Confidence 2478999999999999855544
No 25
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.89 E-value=1.9e-22 Score=187.87 Aligned_cols=212 Identities=15% Similarity=0.196 Sum_probs=137.7
Q ss_pred ccccccCcccccccc-CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHh-----CCCcEEEEeCCCC--HHHHHHHHHHH
Q psy2891 194 VTGISTGFFELDKIT-SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE-----NKLPVAIFSMEMS--GIQLAMRMLGS 265 (452)
Q Consensus 194 ~~~i~tg~~~LD~~~-gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~-----~g~~vl~~s~E~~--~~~i~~R~~a~ 265 (452)
..+++||++.||+++ ||+++|++++|.|+||+|||+|+.+++.+++.. .+.+|+||+.|++ ..++..++..
T Consensus 3 ~~~i~tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~- 81 (243)
T 1n0w_A 3 IIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAER- 81 (243)
T ss_dssp CCEECCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHH-
T ss_pred ceEecCCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHH-
Confidence 357999999999996 799999999999999999999999999976542 2578999999994 6666555432
Q ss_pred hCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHH---HHHHHHHHHcCCccEEEEcCcchhccCC-
Q psy2891 266 VGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELR---ANSRRLSRQCGKIGVIIIDYLQLMSANS- 341 (452)
Q Consensus 266 ~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~---~~i~~~~~~~~~~~~vvID~l~~i~~~~- 341 (452)
.+++.. + + +. ++++... .+..++. ..+..+...++ +++||||+++.+....
T Consensus 82 -~g~~~~----------~---~------~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~lliiD~~~~~~~~~~ 136 (243)
T 1n0w_A 82 -YGLSGS----------D---V------LD--NVAYARA--FNTDHQTQLLYQASAMMVESR-YALLIVDSATALYRTDY 136 (243)
T ss_dssp -TTCCHH----------H---H------HH--TEEEEEC--CSHHHHHHHHHHHHHHHHHSC-EEEEEEETSSGGGC---
T ss_pred -cCCCHH----------H---H------hh--CeEEEec--CCHHHHHHHHHHHHHHHhcCC-ceEEEEeCchHHHHHHh
Confidence 233221 1 1 11 3444322 3444433 33444445554 9999999999876532
Q ss_pred CC----CCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCc--hhh--hhhchhhhhhceeEEEecCccc
Q psy2891 342 RG----ENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIM--SDL--RESGAIEQDADVILFIYRDEVY 413 (452)
Q Consensus 342 ~~----~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l--~dl--~~S~~ie~~aD~vl~l~r~~~~ 413 (452)
.+ ..+...+..+++.|+.+++++|++||+++|.++..+.+ |.. ++. .++..+++.||.+++|++.+
T Consensus 137 ~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~----~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~-- 210 (243)
T 1n0w_A 137 SGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGA----AMFAADPKKPIGGNIIAHASTTRLYLRKGR-- 210 (243)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-----------------------------CCTTCEEEEEEECS--
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCc----cccCCCcccCCccChhhhcCcEEEEEEEcC--
Confidence 11 11122478899999999999999999999999876432 100 111 44557999999999998752
Q ss_pred ccCCCCCCeEEEEEeeccCCCcceEEEEEE
Q psy2891 414 NQNSADKGIAEIIVSKQRNGPIGNIRLTFS 443 (452)
Q Consensus 414 ~~~~~~~~~~~l~i~KnR~G~~g~~~l~f~ 443 (452)
...+.+.+.|+|+++.+.+.|...
T Consensus 211 ------~~~r~l~v~K~r~~~~~~~~f~I~ 234 (243)
T 1n0w_A 211 ------GETRICKIYDSPCLPEAEAMFAIN 234 (243)
T ss_dssp ------TTEEEEEECCBTTBSCEEEEEEEE
T ss_pred ------CCeEEEEEEECCCCCCCeEEEEEe
Confidence 125689999999999887555544
No 26
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=99.88 E-value=9.9e-22 Score=191.61 Aligned_cols=208 Identities=17% Similarity=0.177 Sum_probs=152.6
Q ss_pred ccccccCcccccccc--CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCc
Q psy2891 194 VTGISTGFFELDKIT--SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQ 271 (452)
Q Consensus 194 ~~~i~tg~~~LD~~~--gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~ 271 (452)
...+|||++.||.++ ||+++|++++|+|+||+|||+|+++++..++. .|.+|+|++.|++..+...+- .|++.
T Consensus 39 ~~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~-~gg~VlyId~E~s~~~~ra~r----lgv~~ 113 (356)
T 3hr8_A 39 VEVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK-MGGVAAFIDAEHALDPVYAKN----LGVDL 113 (356)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCCCCHHHHHH----HTCCG
T ss_pred CceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEecccccchHHHHH----cCCch
Confidence 678999999999984 69999999999999999999999999999875 678999999999877653222 24432
Q ss_pred cccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhcc-C---C-CCC--
Q psy2891 272 HKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSA-N---S-RGE-- 344 (452)
Q Consensus 272 ~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~-~---~-~~~-- 344 (452)
. ++++.. ..+.+++...++.+.+..+ +++||||+++.+.+ . . .++
T Consensus 114 ~-------------------------~l~i~~--~~~~e~~l~~~~~l~~~~~-~dlvVIDSi~~l~~~~el~g~~G~~q 165 (356)
T 3hr8_A 114 K-------------------------SLLISQ--PDHGEQALEIVDELVRSGV-VDLIVVDSVAALVPRAEIEGAMGDMQ 165 (356)
T ss_dssp G-------------------------GCEEEC--CSSHHHHHHHHHHHHHTSC-CSEEEEECTTTCCCHHHHTTCCCSSC
T ss_pred h-------------------------hhhhhh--ccCHHHHHHHHHHHhhhcC-CCeEEehHhhhhcChhhhcccchhhH
Confidence 2 233332 3467788888887776664 99999999998764 1 1 111
Q ss_pred --CHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccccCCC-CCC
Q psy2891 345 --NRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSA-DKG 421 (452)
Q Consensus 345 --~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~~-~~~ 421 (452)
.....+..+++.|+.+|+++|++||+++|+......- ...| ....|+..+++.+|+++.+.+.+.....+. ..+
T Consensus 166 ~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~~-fg~p--~~~~GG~~l~h~~~~rl~l~k~~~~k~g~~~~g~ 242 (356)
T 3hr8_A 166 VGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGVM-FGSP--ETTTGGLALKFYATMRMEVRRGEPIKEGKDVIGN 242 (356)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSSS-SCSC--SSCTHHHHHHHHCSEEEEEEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeccccc-cCCc--ccCCCcchhhhhCcEEEEEEeccccccCCccccc
Confidence 1235577888999999999999999999995322110 1122 345778889999999999988532211110 113
Q ss_pred eEEEEEeeccCCCcce
Q psy2891 422 IAEIIVSKQRNGPIGN 437 (452)
Q Consensus 422 ~~~l~i~KnR~G~~g~ 437 (452)
.+.+.+.|||.++++.
T Consensus 243 ~~~vkvvKnr~~~~~~ 258 (356)
T 3hr8_A 243 VISVKIVKNKVAPPFK 258 (356)
T ss_dssp EEEEEEEEESSSCCCC
T ss_pred EEEEEEEeCCCCCCCc
Confidence 5789999999998775
No 27
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.87 E-value=5.6e-21 Score=176.60 Aligned_cols=215 Identities=21% Similarity=0.214 Sum_probs=149.4
Q ss_pred cccccCcccccccc-CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccc
Q psy2891 195 TGISTGFFELDKIT-SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHK 273 (452)
Q Consensus 195 ~~i~tg~~~LD~~~-gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~ 273 (452)
.+++||++.||++. ||+++|++++|.|+||+|||+|+.+++...+. .+.+|+|++.|++..++..++. ..+++...
T Consensus 3 ~~i~tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~-~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~ 79 (235)
T 2w0m_A 3 SRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR-DGDPCIYVTTEESRDSIIRQAK--QFNWDFEE 79 (235)
T ss_dssp CEECCSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH-HTCCEEEEESSSCHHHHHHHHH--HTTCCCGG
T ss_pred ccccCCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH-CCCeEEEEEcccCHHHHHHHHH--HhcchHHH
Confidence 37899999999996 69999999999999999999999999988865 4678999999999998888775 34555443
Q ss_pred cccCCCCc-chHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCcc--EEEEcCcchhccCCCCCCHHHHH
Q psy2891 274 LRTGRLSS-DDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIG--VIIIDYLQLMSANSRGENRATEI 350 (452)
Q Consensus 274 i~~g~l~~-~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~--~vvID~l~~i~~~~~~~~~~~~~ 350 (452)
+....+.- +..... .. +.++.+ ..+.+++...+.++...++ ++ ++|||+++.+.... . ...
T Consensus 80 ~~~~~~~~~~~~~~~------~~--~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~llilDe~~~~~~~d--~---~~~ 143 (235)
T 2w0m_A 80 YIEKKLIIIDALMKE------KE--DQWSLV--NLTPEELVNKVIEAKQKLG-YGKARLVIDSVSALFLDK--P---AMA 143 (235)
T ss_dssp GBTTTEEEEECCC------------CTTBCS--SCCHHHHHHHHHHHHHHHC-SSCEEEEEETGGGGSSSC--G---GGH
T ss_pred HhhCCEEEEeccccc------cC--ceeeec--CCCHHHHHHHHHHHHHhhC-CCceEEEEECchHhhcCC--H---HHH
Confidence 32211100 000000 00 111111 2377888877777776665 99 99999999875322 1 234
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccccCCCCCCeEEEEEeec
Q psy2891 351 SEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQ 430 (452)
Q Consensus 351 ~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~~~~~~~~l~i~Kn 430 (452)
..+++.|+.+++++|++||+++|..+... +. +. ..+++.||.|+.|++++.. .+....+.|.|+
T Consensus 144 ~~~~~~l~~~~~~~~~~vi~~~h~~~~~~-~~--------~~--~~~~~~~d~vi~l~~~~~~-----~~~~r~l~v~K~ 207 (235)
T 2w0m_A 144 RKISYYLKRVLNKWNFTIYATSQYAITTS-QA--------FG--FGVEHVADGIIRFRRMIRN-----GELHRYILIEKM 207 (235)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEC----------------------CHHHHCSEEEEEEEEEET-----TEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCeEEEEeccCcccc-cc--------cc--cchheeeeEEEEEEEEecC-----CcEEEEEEEEec
Confidence 67889999999999999999999986321 11 11 3688999999999987542 124578999999
Q ss_pred cCCCcce--EEEEEEc
Q psy2891 431 RNGPIGN--IRLTFSG 444 (452)
Q Consensus 431 R~G~~g~--~~l~f~~ 444 (452)
|+++.+. ..|....
T Consensus 208 r~~~~~~~~~~f~i~~ 223 (235)
T 2w0m_A 208 RQTDHDKHVWEIDIVN 223 (235)
T ss_dssp TTCCCCCSCEEEEEET
T ss_pred cCCcccceeEEEEEcC
Confidence 9988653 4555543
No 28
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.87 E-value=1.8e-21 Score=221.82 Aligned_cols=205 Identities=22% Similarity=0.239 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHHHHHhCCC-------CCCCccccccCccccccccC--CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHh
Q psy2891 171 QPLLNRVIKRINKLHNRGT-------NDNDVTGISTGFFELDKITS--GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE 241 (452)
Q Consensus 171 ~~~~~~~~~~i~~~~~~~~-------~~~~~~~i~tg~~~LD~~~g--G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~ 241 (452)
.+++..+...++..+.... ......++|||++.||+++| |+++|++++|+|+||+|||+||+|+|.+++.
T Consensus 680 ~~~i~~a~~~i~~~f~~~~~~~l~~~~~~~~~~i~TG~~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~- 758 (2050)
T 3cmu_A 680 QKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR- 758 (2050)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEGGGCTTTSCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHhhccccccchhhhhhcccceeecCChHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHh-
Confidence 3455666666655432110 00256789999999999974 9999999999999999999999999999985
Q ss_pred CCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHH
Q psy2891 242 NKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSR 321 (452)
Q Consensus 242 ~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~ 321 (452)
.+.+|+|||+||+..++.. ...|++. .++++.+ ..+++++.+.++++++
T Consensus 759 ~g~~VlyiS~Ees~~ql~A----~rlG~~~-------------------------~~l~i~~--~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 759 EGKTCAFIDAEHALDPIYA----RKLGVDI-------------------------DNLLCSQ--PDTGEQALEICDALAR 807 (2050)
T ss_dssp TTCCEEEECTTSCCCHHHH----HHTTCCT-------------------------TTCEEEC--CSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCcHHHHHH----HHcCCCc-------------------------cceEEec--CCCHHHHHHHHHHHhh
Confidence 5789999999999999852 2233321 3677763 4789999999999988
Q ss_pred HcCCccEEEEcCcchhcc-C---CCCCCH-----HHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhh
Q psy2891 322 QCGKIGVIIIDYLQLMSA-N---SRGENR-----ATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLR 392 (452)
Q Consensus 322 ~~~~~~~vvID~l~~i~~-~---~~~~~~-----~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~ 392 (452)
+++ +++|||||||.+.. . ....++ ..+++++++.|+.+|+++|||||+++|++|..+.-- ..| ..-.
T Consensus 808 ~~~-~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv~r~~e~~f-gdp--~~p~ 883 (2050)
T 3cmu_A 808 SGA-VDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF-GNP--ETTT 883 (2050)
T ss_dssp HTC-CSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCS-SCC--EECS
T ss_pred ccC-CCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccccccchhhc-CCC--cccc
Confidence 875 99999999999975 1 111111 225888999999999999999999999999876421 112 1224
Q ss_pred hhchhhhhhceeEEEecCc
Q psy2891 393 ESGAIEQDADVILFIYRDE 411 (452)
Q Consensus 393 ~S~~ie~~aD~vl~l~r~~ 411 (452)
|+..+.+.+++.+.|.|..
T Consensus 884 GG~~l~h~a~~Rl~Lrr~~ 902 (2050)
T 3cmu_A 884 GGNALKFYASVRLDIRRIG 902 (2050)
T ss_dssp SHHHHHHHEEEEEEEEEEE
T ss_pred CCceeeeeeeEEEEEEeec
Confidence 5668999999999998863
No 29
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=99.82 E-value=1.9e-19 Score=170.18 Aligned_cols=202 Identities=16% Similarity=0.161 Sum_probs=130.8
Q ss_pred ccccccCccccccc-c----CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHh-CCCcEEEEeCCCCHHHHHHHHHHHhC
Q psy2891 194 VTGISTGFFELDKI-T----SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE-NKLPVAIFSMEMSGIQLAMRMLGSVG 267 (452)
Q Consensus 194 ~~~i~tg~~~LD~~-~----gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~-~g~~vl~~s~E~~~~~i~~R~~a~~~ 267 (452)
...++||++.||.+ . ||+++| ++.|+|+||+|||+|++|++.+++.+ .|.+|+||+.|.+..+. | +...
T Consensus 4 ~~risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~--r--a~~l 78 (333)
T 3io5_A 4 MDVVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA--Y--LRSM 78 (333)
T ss_dssp --CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH--H--HHHT
T ss_pred CCEecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH--H--HHHh
Confidence 44799999999998 5 789999 99999999999999999999999754 27899999999987654 2 2234
Q ss_pred CCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHH-HHHHHHH--HHHcCCccEEEEcCcchhccCC--C
Q psy2891 268 KLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIEL-RANSRRL--SRQCGKIGVIIIDYLQLMSANS--R 342 (452)
Q Consensus 268 ~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i-~~~i~~~--~~~~~~~~~vvID~l~~i~~~~--~ 342 (452)
|++.+ ++++.. ..+.+++ ...++.+ .+.. ++++||||+++.+.+.. .
T Consensus 79 Gvd~d-------------------------~llv~~--~~~~E~~~l~i~~~l~~i~~~-~~~lvVIDSI~aL~~~~eie 130 (333)
T 3io5_A 79 GVDPE-------------------------RVIHTP--VQSLEQLRIDMVNQLDAIERG-EKVVVFIDSLGNLASKKETE 130 (333)
T ss_dssp TCCGG-------------------------GEEEEE--CSBHHHHHHHHHHHHHTCCTT-CCEEEEEECSTTCBCC----
T ss_pred CCCHH-------------------------HeEEEc--CCCHHHHHHHHHHHHHHhhcc-CceEEEEecccccccchhcc
Confidence 55543 234432 2367777 6655555 3333 59999999999987421 1
Q ss_pred ---CC------CHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCccc
Q psy2891 343 ---GE------NRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVY 413 (452)
Q Consensus 343 ---~~------~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~ 413 (452)
++ .....+...++.|..+|+++||+||++.|+.+ ... .-..|.. -|...+ +.|.+-+.+.+-...
T Consensus 131 g~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~k-~G~-~fg~p~~---~GG~~l-~~ss~Rl~lrk~~~i 204 (333)
T 3io5_A 131 DALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYE-TQE-MFSKTVM---GGGTGP-MYSADTVFIIGKRQI 204 (333)
T ss_dssp ----------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC--------------------CCG-GGGSSEEEEEEEC--
T ss_pred CccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCeee-cCc-ccCCCCC---CCccee-eeeeEEEEEEecccc
Confidence 11 23345666677778889999999999999977 321 1123432 455567 888888888664432
Q ss_pred ccC-CCCCCeEEEEEeeccCCC
Q psy2891 414 NQN-SADKGIAEIIVSKQRNGP 434 (452)
Q Consensus 414 ~~~-~~~~~~~~l~i~KnR~G~ 434 (452)
.+. +.--+.+.+.+.|+|--+
T Consensus 205 k~~~~~~G~~~~v~~~k~kv~k 226 (333)
T 3io5_A 205 KDGSDLQGYQFVLNVEKSRTVK 226 (333)
T ss_dssp --------CEEEEEEEECSSBC
T ss_pred ccCCccEEeEEEEeEEEEEEcc
Confidence 211 111234677788888654
No 30
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.81 E-value=4.8e-19 Score=163.40 Aligned_cols=202 Identities=16% Similarity=0.221 Sum_probs=129.1
Q ss_pred CccccccCcccccccc-CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHh-----CCCcEEEEeCCCC--HHHHHHHHHH
Q psy2891 193 DVTGISTGFFELDKIT-SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE-----NKLPVAIFSMEMS--GIQLAMRMLG 264 (452)
Q Consensus 193 ~~~~i~tg~~~LD~~~-gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~-----~g~~vl~~s~E~~--~~~i~~R~~a 264 (452)
.+..++||++.||+++ ||+++|+++.|.|+||+|||||+..++...... .+.+++|++.|.. ...+.....
T Consensus 3 ~~~~i~tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~- 81 (231)
T 4a74_A 3 TIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQ- 81 (231)
T ss_dssp CCCEECCSCHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHH-
T ss_pred cCCccCCCChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHH-
Confidence 3568999999999986 899999999999999999999999999866431 2456999999975 444333322
Q ss_pred HhCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCC-CCHHHHHHHHHHHHH-----HcCCccEEEEcCcchhc
Q psy2891 265 SVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPS-LNVIELRANSRRLSR-----QCGKIGVIIIDYLQLMS 338 (452)
Q Consensus 265 ~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~-~t~~~i~~~i~~~~~-----~~~~~~~vvID~l~~i~ 338 (452)
..++... . . +. ++.+..... .........+..+.. .. +++++++|+++...
T Consensus 82 -~~~~~~~-------------~---~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~llilDe~~~~l 138 (231)
T 4a74_A 82 -NRGLDPD-------------E---V---LK--HIYVARAFNSNHQMLLVQQAEDKIKELLNTDR-PVKLLIVDSLTSHF 138 (231)
T ss_dssp -HTTSCHH-------------H---H---HH--TEEEEECCSHHHHHHHHHHHHHHHHHHTTSSS-CEEEEEEETSSHHH
T ss_pred -HcCCCHH-------------H---H---hh--cEEEEecCChHHHHHHHHHHHHHHHHhcccCC-ceeEEEECChHHHh
Confidence 2222211 0 0 11 233322111 011111223333333 34 49999999998764
Q ss_pred cCC-CCCC----HHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCccc
Q psy2891 339 ANS-RGEN----RATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVY 413 (452)
Q Consensus 339 ~~~-~~~~----~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~ 413 (452)
... ...+ +...+..+++.|+.++++.|++||+++|..+. ++..+++.||.++++.+..
T Consensus 139 ~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~---------------~g~~~~~~~d~~l~l~~~~-- 201 (231)
T 4a74_A 139 RSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQAN---------------GGHILAHSATLRVYLRKGK-- 201 (231)
T ss_dssp HHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC------------------------CCSEEEEEEECT--
T ss_pred ccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccC---------------cchhhHhhceEEEEEEecC--
Confidence 321 1111 22235688999999999999999999999874 3456889999999998742
Q ss_pred ccCCCCCCeEEEEEeeccCCCcceEEEE
Q psy2891 414 NQNSADKGIAEIIVSKQRNGPIGNIRLT 441 (452)
Q Consensus 414 ~~~~~~~~~~~l~i~KnR~G~~g~~~l~ 441 (452)
.....+.+.|+|+|+.|.+.|.
T Consensus 202 ------~~~r~l~~~K~r~~~~~~~~f~ 223 (231)
T 4a74_A 202 ------GGKRIARLIDAPHLPEGEAVFS 223 (231)
T ss_dssp ------TSCEEEEEESCC--CCSCEEEE
T ss_pred ------CCeEEEEEEeCCCCCCceEEEE
Confidence 2357899999999999987443
No 31
>2r6a_C DNAG primase, helicase binding domain, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_G 1z8s_A*
Probab=99.77 E-value=2.5e-18 Score=146.83 Aligned_cols=126 Identities=15% Similarity=0.121 Sum_probs=109.2
Q ss_pred CCCCCHHHHHHHHHHHhcCcccHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCCcccccCHHH
Q psy2891 14 VPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITVFDSLSNTGNAEEIGGLSY 93 (452)
Q Consensus 14 ~~~~~~~aE~~vLg~ll~~~~~~~~i~~~L~p~~F~~~~h~~If~~i~~l~~~~~~id~~tv~~~l~~~~~~~~~gg~~~ 93 (452)
..|++.+||++|||+||.+|+.+..+.+.| |+|||++.||.||++|.+++.+|.|+|+.+|.++|.+ + + ..|
T Consensus 2 ~~p~~~~AE~~lL~~ll~~~~~~~~v~~~l-~~dF~~~~h~~If~~i~~l~~~~~~~d~~tl~~~l~~-~-~-----~~~ 73 (143)
T 2r6a_C 2 LLPAFQNAERLLLAHMMRSRDVALVVQERI-GGRFNIEEHRALAAYIYAFYEEGHEADPGALISRIPG-E-L-----QPL 73 (143)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHC-CSCCSSHHHHHHHHHHHHHHTTSCCSCHHHHTTTSCS-S-S-----HHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHhc-cccCCcHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H-H-----HHH
Confidence 368999999999999999999999999999 9999999999999999999999999999999988865 3 2 347
Q ss_pred HHHHHh-c---CCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHH
Q psy2891 94 LNSLAQ-N---IPSAANIRRYAEIVRDRGILRKLITVTDEISSQAFISRGKEVKQILDEAE 150 (452)
Q Consensus 94 l~~l~~-~---~~~~~n~~~y~~~l~~~~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 150 (452)
+..+.. . .++..|+.+|+++|++.+.+|+++..+.++.+..+. .|.+++++.+.
T Consensus 74 l~~l~~~~~~~~~~~~~i~~y~~~v~~~~~~r~l~~~~~~i~~~~~~---~d~~~~l~~~~ 131 (143)
T 2r6a_C 74 ASELSLLLIADDVSEQELEDYIRHVLNRPKWLMLKVKEQEKTEAERR---KDFLTAARIAK 131 (143)
T ss_dssp HHHHTTSCCCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHT---TCHHHHHHHHH
T ss_pred HHHHHHhhcCCcCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC---CCHHHHHHHHH
Confidence 777766 3 678899999999999999999999999999887653 36666665553
No 32
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.76 E-value=1.2e-17 Score=163.59 Aligned_cols=216 Identities=15% Similarity=0.214 Sum_probs=140.7
Q ss_pred ccccccCccccccc-cCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHh--C---CCcEEEEeCCCC--HHHHHHHHHHH
Q psy2891 194 VTGISTGFFELDKI-TSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE--N---KLPVAIFSMEMS--GIQLAMRMLGS 265 (452)
Q Consensus 194 ~~~i~tg~~~LD~~-~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~--~---g~~vl~~s~E~~--~~~i~~R~~a~ 265 (452)
...++||++.||.+ .||+++|+++.|.|+||+|||+|+.+++...+.. . +.+|+||+.|.+ ++++... +.
T Consensus 110 ~~~isTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i--~q 187 (349)
T 1pzn_A 110 IGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREI--AQ 187 (349)
T ss_dssp CCEECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHH--HH
T ss_pred CCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHH--HH
Confidence 45799999999998 5799999999999999999999999999986421 1 357899999986 3333322 22
Q ss_pred hCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCC-CCHHHHHHHHHHHHHHc----CCccEEEEcCcchhccC
Q psy2891 266 VGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPS-LNVIELRANSRRLSRQC----GKIGVIIIDYLQLMSAN 340 (452)
Q Consensus 266 ~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~-~t~~~i~~~i~~~~~~~----~~~~~vvID~l~~i~~~ 340 (452)
..+++... +. .++++..... ....++...++.+.... .++++||||+++.....
T Consensus 188 ~~~~~~~~--------------------v~-~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~ 246 (349)
T 1pzn_A 188 NRGLDPDE--------------------VL-KHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRS 246 (349)
T ss_dssp TTTCCHHH--------------------HG-GGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHH
T ss_pred HcCCCHHH--------------------Hh-hCEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhh
Confidence 22222111 11 1344432211 11234445555665552 24999999999976532
Q ss_pred C-CCC----CHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCccccc
Q psy2891 341 S-RGE----NRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQ 415 (452)
Q Consensus 341 ~-~~~----~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~ 415 (452)
. .+. .+...+..+++.|+.+++++|++||+++|.....+...+ .| ....++..+++.+|.++.+.+...
T Consensus 247 ~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~-~~--~~~~~G~~l~~~~~~rL~l~~~~~--- 320 (349)
T 1pzn_A 247 EYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFG-DP--TRPIGGHILAHSATLRVYLRKGKG--- 320 (349)
T ss_dssp HCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC------------------CCCCCTTCSEEEEEEECTT---
T ss_pred hhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccC-Cc--cccCCcceEeecCcEEEEEEEcCC---
Confidence 1 111 123457889999999999999999999998764431100 11 123456678999999999987531
Q ss_pred CCCCCCeEEEEEeeccCCCcceEEEEEE
Q psy2891 416 NSADKGIAEIIVSKQRNGPIGNIRLTFS 443 (452)
Q Consensus 416 ~~~~~~~~~l~i~KnR~G~~g~~~l~f~ 443 (452)
..+.+.+.|+|+++.|...|...
T Consensus 321 -----~~Ri~k~~ks~~~~~~~~~f~It 343 (349)
T 1pzn_A 321 -----GKRIARLIDAPHLPEGEAVFSIT 343 (349)
T ss_dssp -----SEEEEEESCSSSSCCSEEEEEEE
T ss_pred -----CeEEEEEEeCCCCCCeEEEEEEc
Confidence 35688999999999888655443
No 33
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.71 E-value=7.1e-16 Score=143.87 Aligned_cols=226 Identities=15% Similarity=0.175 Sum_probs=135.8
Q ss_pred CccccccCcccccccc-CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCc
Q psy2891 193 DVTGISTGFFELDKIT-SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQ 271 (452)
Q Consensus 193 ~~~~i~tg~~~LD~~~-gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~ 271 (452)
...+++||++.||+++ ||+++|+++.|.|++|+|||||+..++...+...+.+++|++.|.+..++..+.. ..++..
T Consensus 8 ~~~~i~tg~~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~ 85 (251)
T 2ehv_A 8 PVRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMA--SFGWDF 85 (251)
T ss_dssp CCCEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHH--TTTCCH
T ss_pred ccceeecCCHhHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHH--HcCCCh
Confidence 3558999999999985 6999999999999999999999999997665235788999999999988776653 234433
Q ss_pred cccc-cCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHH
Q psy2891 272 HKLR-TGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEI 350 (452)
Q Consensus 272 ~~i~-~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~ 350 (452)
.... .+.+.-.+....... ......+. ......+.++...+.......+ ++++++|.++....... +. ...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-p~~lilDep~~~ld~~~--d~-~~~ 157 (251)
T 2ehv_A 86 EKYEKEGKIAIVDGVSSVVG---LPSEEKFV-LEDRFNVDNFLRYIYRVVKAIN-AKRLVIDSIPSIALRLE--EE-RKI 157 (251)
T ss_dssp HHHHHTTSEEEEC-----------------------CCHHHHHHHHHHHHHHTT-CSEEEEECHHHHHHHSS--SG-GGH
T ss_pred HHHhhcCCEEEEEccccccc---ccccccee-ccCcccHHHHHHHHHHHHHhhC-CCEEEEccHHHHHhhcC--CH-HHH
Confidence 3210 111111110000000 00000111 0112346666666655555565 99999999987654211 11 112
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhh-ceeEEEecCcccccCCCCCCeEEEEEee
Q psy2891 351 SEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDA-DVILFIYRDEVYNQNSADKGIAEIIVSK 429 (452)
Q Consensus 351 ~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~a-D~vl~l~r~~~~~~~~~~~~~~~l~i~K 429 (452)
...+..|...+++.|++||+++|....... .+. ...+++.| |.|++|.+.+.. ......+.+.|
T Consensus 158 ~~~l~~l~~~l~~~g~tii~vtH~~~~~~~---------~~~-~~~i~~~~aD~vi~l~~~~~~-----~~~~r~l~i~K 222 (251)
T 2ehv_A 158 REVLLKLNTILLEMGVTTILTTEAPDPQHG---------KLS-RYGIEEFIARGVIVLDLQEKN-----IELKRYVLIRK 222 (251)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEECCC----C---------CSS-SSSCGGGGCSEEEEEEEEECS-----SSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCeEEEEECCCCCCcc---------ccc-ccChhhEeeeEEEEEeeeccC-----CeeEEEEEEEE
Confidence 232333333335679999999998875420 011 12467788 999999875421 23356899999
Q ss_pred ccCCCcce--EEEEEE
Q psy2891 430 QRNGPIGN--IRLTFS 443 (452)
Q Consensus 430 nR~G~~g~--~~l~f~ 443 (452)
.|.++... ..+...
T Consensus 223 ~r~~~~~~~~~~~~i~ 238 (251)
T 2ehv_A 223 MRETRHSMKKYPFEIG 238 (251)
T ss_dssp ETTCCCCCBEEEEEEE
T ss_pred ccCCCcCCceEEEEEC
Confidence 99987543 444444
No 34
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=99.69 E-value=5.1e-16 Score=144.47 Aligned_cols=223 Identities=12% Similarity=-0.064 Sum_probs=138.3
Q ss_pred ccccCccccccc-cCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccc
Q psy2891 196 GISTGFFELDKI-TSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKL 274 (452)
Q Consensus 196 ~i~tg~~~LD~~-~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i 274 (452)
.++||++.||++ .||+++|.+++|.|.||+|||+|++|++.+.+. +|.+|+||++|+++.++..++.+ .|+|...+
T Consensus 2 ~i~tGi~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~-~Ge~~~~~~~~e~~~~l~~~~~~--~G~dl~~~ 78 (260)
T 3bs4_A 2 SLSWEIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLK-SDNLVGMFSISYPLQLIIRILSR--FGVDVIKY 78 (260)
T ss_dssp CBCCSSHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHH-TTCEEEEEECSSCHHHHHHHHHH--TTCCHHHH
T ss_pred cCccCcHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHH-CCCcEEEEEEeCCHHHHHHHHHH--cCCCHHHH
Confidence 479999999998 688999999999999999999999999999975 79999999999999999999875 68888765
Q ss_pred -ccCCCCcchHHHHHHHHHHHhCCCeEEEcCC-CCCHHHHHHHHHHHHHH----------cCCcc-EEEEcCcchhccCC
Q psy2891 275 -RTGRLSSDDWPRINDSIKKINKSQLYIDETP-SLNVIELRANSRRLSRQ----------CGKIG-VIIIDYLQLMSANS 341 (452)
Q Consensus 275 -~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~-~~t~~~i~~~i~~~~~~----------~~~~~-~vvID~l~~i~~~~ 341 (452)
.+|.+..-+.. ......-...+. +...+ .++++++...++++... .+..+ ++|||+|..+..-.
T Consensus 79 ~~~g~l~i~d~~--~~~~~~~~~~~~-v~~~~~e~d~~~l~~~i~~iv~~~~~~~~i~~~~~~~rvv~vidsldsl~~~~ 155 (260)
T 3bs4_A 79 LENHRLAIVDTF--GSFHGIKATMPG-VWYLEGMLSSETLPIKYAKAVEDHKKVWMDLNLFEGRELYGFAISMSGYLEVF 155 (260)
T ss_dssp HHTTSEEEECHH--HHHHTC---CTT-EECCCSCCCTTTHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEEETGGGGGGTS
T ss_pred hhCCcEEEEEcc--cccccccccccc-eecccccCCHHHHHHHHHHHHHhhccccchhhccCCceEEEEEeecchHHHHh
Confidence 45554332210 000000000111 11122 45555664444444433 23244 45888877666432
Q ss_pred CCCCHHHHHHHHHHHHHH-----HHHH-hCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCccccc
Q psy2891 342 RGENRATEISEISRNLKG-----LAKE-INCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQ 415 (452)
Q Consensus 342 ~~~~~~~~~~~i~~~Lk~-----lA~~-~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~ 415 (452)
........+...+.. +.++ .+++.+++.+ .... .. ....+...||.||.+...+..
T Consensus 156 ---~~~~~~~~~~~ll~~~~~~~~~~~~~~~ttil~~~-~~~~----------~~--~~~~l~~laD~VI~lr~~e~~-- 217 (260)
T 3bs4_A 156 ---TPEETLRYLETSAEVRYGHPAYKKYPRGTNFWLWE-GVKD----------KR--VLLSVYRRADYVLKTRSSLGE-- 217 (260)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCHHHHSSCCCEEEEEEE-SCSC----------HH--HHHHHHHHCSEEEEEEEEEET--
T ss_pred ---ChhhHHHHHHHHHHhhhhHHHHhccCCcEEEEEEC-CCcc----------cc--cccceEEEeeEEEEEEEEecC--
Confidence 222222222222222 3334 7877777765 3211 01 123567789999999765421
Q ss_pred CCCCCCeEEEEEeeccCCCc--ceEEEEEEcC
Q psy2891 416 NSADKGIAEIIVSKQRNGPI--GNIRLTFSGQ 445 (452)
Q Consensus 416 ~~~~~~~~~l~i~KnR~G~~--g~~~l~f~~~ 445 (452)
..-...|.|.|.|.+.. +.-.+.|...
T Consensus 218 ---g~~rR~L~V~K~Rg~~~~~~~re~~i~~~ 246 (260)
T 3bs4_A 218 ---NGIKRELLVIKTPKPIEELVRFEYEFKGN 246 (260)
T ss_dssp ---TEEEEEEEEEECCC-----CEEEEEEETT
T ss_pred ---CceEEEEEEEECCCCCcCCceEEEEEecC
Confidence 12246899999998754 3335777654
No 35
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.66 E-value=1.8e-15 Score=156.61 Aligned_cols=203 Identities=19% Similarity=0.180 Sum_probs=143.4
Q ss_pred CccccccCccccccc-cCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCc
Q psy2891 193 DVTGISTGFFELDKI-TSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQ 271 (452)
Q Consensus 193 ~~~~i~tg~~~LD~~-~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~ 271 (452)
...+++||++.||.+ .||+++|+++.|.|+||+|||+|+.+++...+. .|.+|+|+++|.+..++..++.. .|++.
T Consensus 259 ~~~~l~~g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~-~G~~vi~~~~ee~~~~l~~~~~~--~g~~~ 335 (525)
T 1tf7_A 259 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACA-NKERAILFAYEESRAQLLRNAYS--WGMDF 335 (525)
T ss_dssp CCCEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT-TTCCEEEEESSSCHHHHHHHHHT--TSCCH
T ss_pred ccceeecChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh-CCCCEEEEEEeCCHHHHHHHHHH--cCCCH
Confidence 345789999999997 578999999999999999999999999988764 58899999999999888877632 22221
Q ss_pred cccccCCCCcchHHHHHHHHHHHhCCCeEEEc--CCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHH
Q psy2891 272 HKLRTGRLSSDDWPRINDSIKKINKSQLYIDE--TPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATE 349 (452)
Q Consensus 272 ~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~--~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~ 349 (452)
+ .+ .....+.+.+ ...++..+....+.......+ ++++|+|+++.+.... .. .+
T Consensus 336 ----------~---~~------~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~-p~llilDp~~~Ld~~~--~~-~~- 391 (525)
T 1tf7_A 336 ----------E---EM------ERQNLLKIVCAYPESAGLEDHLQIIKSEINDFK-PARIAIDSLSALARGV--SN-NA- 391 (525)
T ss_dssp ----------H---HH------HHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTC-CSEEEEECHHHHTSSS--CH-HH-
T ss_pred ----------H---HH------HhCCCEEEEEeccccCCHHHHHHHHHHHHHhhC-CCEEEEcChHHHHhhC--Ch-HH-
Confidence 1 11 1112344433 234677777776666655564 9999999999887653 22 22
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhh-chhhhhhceeEEEecCcccccCCCCCCeEEEEEe
Q psy2891 350 ISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRES-GAIEQDADVILFIYRDEVYNQNSADKGIAEIIVS 428 (452)
Q Consensus 350 ~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S-~~ie~~aD~vl~l~r~~~~~~~~~~~~~~~l~i~ 428 (452)
....+..|...+++.|++||+++|.....+ .+.++ ..+++.||.|+.|+.-+.. ....+.+.+.
T Consensus 392 ~~~~i~~ll~~l~~~g~tvilvsh~~~~~~----------~~~~~~~~l~~~~D~vi~L~~ge~~-----~~~~R~l~v~ 456 (525)
T 1tf7_A 392 FRQFVIGVTGYAKQEEITGLFTNTSDQFMG----------AHSITDSHISTITDTIILLQYVEIR-----GEMSRAINVF 456 (525)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECSSSSC----------CCSSCSSCCTTTCSEEEEEEEEEET-----TEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECcccccC----------cccccCcccceeeeEEEEEEEEEeC-----CEEEEEEEEE
Confidence 444445555555678999999999763211 12233 4578899999999765421 2235789999
Q ss_pred eccCCCcce
Q psy2891 429 KQRNGPIGN 437 (452)
Q Consensus 429 KnR~G~~g~ 437 (452)
|+|.|+...
T Consensus 457 K~R~~~~~~ 465 (525)
T 1tf7_A 457 KMRGSWHDK 465 (525)
T ss_dssp EESSSCCCC
T ss_pred ECCCCCCCC
Confidence 999998743
No 36
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=99.36 E-value=1.1e-12 Score=124.81 Aligned_cols=124 Identities=16% Similarity=0.176 Sum_probs=88.7
Q ss_pred ccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC--CCCHHHHHHHHHHHhCCCCccc
Q psy2891 196 GISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM--EMSGIQLAMRMLGSVGKLDQHK 273 (452)
Q Consensus 196 ~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~--E~~~~~i~~R~~a~~~~i~~~~ 273 (452)
.++||++.||+++||+++|.+++|.|+||+|||+|+++++.+ .|.+|+|+++ +.+ ++.
T Consensus 105 ~i~TGi~~LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~~----~G~~VlyIs~~~eE~--------------v~~-- 164 (331)
T 2vhj_A 105 ELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEA----LGGKDKYATVRFGEP--------------LSG-- 164 (331)
T ss_dssp TCCSBCCEEEEETTEEEESEEEEEECSCSSSHHHHHHHHHHH----HHTTSCCEEEEBSCS--------------STT--
T ss_pred ccccCcHHHHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHHh----CCCCEEEEEecchhh--------------hhh--
Confidence 367999999998899999999999999999999999999886 3678999999 333 110
Q ss_pred cccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCC----CHHHH
Q psy2891 274 LRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGE----NRATE 349 (452)
Q Consensus 274 i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~----~~~~~ 349 (452)
.. ...+++...+.+...+. ++||||+++.+....... ...+.
T Consensus 165 ~~-------------------------------~~le~~l~~i~~~l~~~---~LLVIDsI~aL~~~~~~~s~~G~v~~~ 210 (331)
T 2vhj_A 165 YN-------------------------------TDFNVFVDDIARAMLQH---RVIVIDSLKNVIGAAGGNTTSGGISRG 210 (331)
T ss_dssp CB-------------------------------CCHHHHHHHHHHHHHHC---SEEEEECCTTTC-----------CCHH
T ss_pred hh-------------------------------cCHHHHHHHHHHHHhhC---CEEEEecccccccccccccccchHHHH
Confidence 00 12334444444443432 299999999986533110 11345
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEec
Q psy2891 350 ISEISRNLKGLAKEINCPILALSQ 373 (452)
Q Consensus 350 ~~~i~~~Lk~lA~~~~i~vi~l~q 373 (452)
+.+++..|..++++.|++++++.+
T Consensus 211 lrqlL~~L~~~~k~~gvtVIlttn 234 (331)
T 2vhj_A 211 AFDLLSDIGAMAASRGCVVIASLN 234 (331)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEECC
T ss_pred HHHHHHHHHHHHhhCCCEEEEEeC
Confidence 788899999999999999888754
No 37
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.19 E-value=1.1e-09 Score=113.01 Aligned_cols=201 Identities=17% Similarity=0.169 Sum_probs=123.6
Q ss_pred CccccccCcccccccc-CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCc
Q psy2891 193 DVTGISTGFFELDKIT-SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQ 271 (452)
Q Consensus 193 ~~~~i~tg~~~LD~~~-gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~ 271 (452)
....+++|.+.||.+. |++++|+++.|.|++|+|||||+.+++...+...+..++|++.+.+..++..+. ...|+..
T Consensus 17 ~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~--~~~g~~~ 94 (525)
T 1tf7_A 17 AIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNA--RSFGWDL 94 (525)
T ss_dssp SCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHH--GGGTCCH
T ss_pred ccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHH--HHcCCCh
Confidence 3567899999999995 599999999999999999999999986555444467799999998876655433 2233332
Q ss_pred cccccCCCCcchHHHHHHHHHHHhCCCeEEEcC----------CCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCC
Q psy2891 272 HKLRTGRLSSDDWPRINDSIKKINKSQLYIDET----------PSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANS 341 (452)
Q Consensus 272 ~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~----------~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~ 341 (452)
.... . ..+++.... ..+.++++...+-...... ++++|++|....+.+..
T Consensus 95 q~~~------------------~-~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g-~~~~lilDe~t~~~~~~ 154 (525)
T 1tf7_A 95 AKLV------------------D-EGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKY-RARRVSIDSVTSVFQQY 154 (525)
T ss_dssp HHHH------------------H-TTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHH-TCSEEEEECSTTTSTTT
T ss_pred HHhh------------------c-cCcEEEEecCcccchhhhhcccCHHHHHHHHHHHHHHc-CCCEEEECCHHHHHHhc
Confidence 2110 0 012222210 1122334333332222333 58999999998766532
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCcccccCCCCCC
Q psy2891 342 RGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKG 421 (452)
Q Consensus 342 ~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~~~~~~~~~~~ 421 (452)
.........+.+.++.+.+ .|++||+++|--.... +....+..+..||.|+.|...... ...
T Consensus 155 --~lD~~~~~~l~~ll~~l~~-~g~tvl~itH~~~~~~----------~~~~~~i~~~laD~vi~L~~~~~~-----G~~ 216 (525)
T 1tf7_A 155 --DASSVVRRELFRLVARLKQ-IGATTVMTTERIEEYG----------PIARYGVEEFVSDNVVILRNVLEG-----ERR 216 (525)
T ss_dssp --CCHHHHHHHHHHHHHHHHH-HTCEEEEEEECSSSSS----------CSSTTSCHHHHCSEEEEEEEECST-----TCC
T ss_pred --CCHHHHHHHHHHHHHHHHH-CCCEEEEEecCCCCcc----------ccccccceeeeeeEEEEEEEEccC-----Cce
Confidence 2233334455566666654 6999999998754321 000011135669999999764321 123
Q ss_pred eEEEEEeeccCC
Q psy2891 422 IAEIIVSKQRNG 433 (452)
Q Consensus 422 ~~~l~i~KnR~G 433 (452)
...+.+.|.|..
T Consensus 217 ~r~l~~~k~r~~ 228 (525)
T 1tf7_A 217 RRTLEILKLRGT 228 (525)
T ss_dssp EEEEEEEEETTS
T ss_pred eEEEEEEECCCC
Confidence 456778888853
No 38
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.86 E-value=3.4e-09 Score=96.35 Aligned_cols=141 Identities=16% Similarity=0.092 Sum_probs=88.2
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHH
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSI 291 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~ 291 (452)
.+|.+++++|+||+||||.+++++.+++ ..|.+|++++.+.+.. ....++...|++..
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~-~~g~kVli~~~~~d~r--~~~~i~srlG~~~~------------------- 67 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLE-YADVKYLVFKPKIDTR--SIRNIQSRTGTSLP------------------- 67 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHH-HTTCCEEEEEECCCGG--GCSSCCCCCCCSSC-------------------
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHH-hcCCEEEEEEeccCch--HHHHHHHhcCCCcc-------------------
Confidence 5788999999999999999999999996 4789999998877632 11111111111110
Q ss_pred HHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEE
Q psy2891 292 KKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILAL 371 (452)
Q Consensus 292 ~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l 371 (452)
.+.+ .+..++.+.++...... ++++|+||.+|.+.. ...+.|..++. .+++||++
T Consensus 68 ------~~~~-----~~~~~i~~~i~~~~~~~-~~dvViIDEaQ~l~~------------~~ve~l~~L~~-~gi~Vil~ 122 (223)
T 2b8t_A 68 ------SVEV-----ESAPEILNYIMSNSFND-ETKVIGIDEVQFFDD------------RICEVANILAE-NGFVVIIS 122 (223)
T ss_dssp ------CEEE-----SSTHHHHHHHHSTTSCT-TCCEEEECSGGGSCT------------HHHHHHHHHHH-TTCEEEEE
T ss_pred ------cccc-----CCHHHHHHHHHHHhhCC-CCCEEEEecCccCcH------------HHHHHHHHHHh-CCCeEEEE
Confidence 1112 12345555544332222 489999999997542 23445566666 49999999
Q ss_pred ecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEe
Q psy2891 372 SQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIY 408 (452)
Q Consensus 372 ~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~ 408 (452)
.+... ... +| +..+..+-..||.|.-|.
T Consensus 123 Gl~~d-f~~----~~----F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 123 GLDKN-FKG----EP----FGPIAKLFTYADKITKLT 150 (223)
T ss_dssp CCSBC-TTS----SB----CTTHHHHHHHCSEEEECC
T ss_pred ecccc-ccC----Cc----CCCcHHHHHHhheEeecc
Confidence 87542 111 11 223456667899998764
No 39
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.18 E-value=8.6e-07 Score=78.23 Aligned_cols=136 Identities=18% Similarity=0.168 Sum_probs=78.0
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHH
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIK 292 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~ 292 (452)
+|.+.++.|++|+|||+++++++.++. ..|.+|++++.+.+. |. +.. .+.+. +.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~-~~g~~v~~~~~~~d~-----r~-----~~~--~i~s~-~g------------ 55 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK-LGKKKVAVFKPKIDS-----RY-----HST--MIVSH-SG------------ 55 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH-HTTCEEEEEEEC---------------CCC--EECC----------------
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEeecccc-----cc-----Ccc--cEEec-CC------------
Confidence 578999999999999999999999886 468899999877542 21 110 11100 00
Q ss_pred HHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEe
Q psy2891 293 KINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALS 372 (452)
Q Consensus 293 ~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ 372 (452)
+.-..+.+. +..++...+. . +.++||||.+|.+.. .+...|+.++.+ +++|++..
T Consensus 56 -~~~~~~~~~-----~~~~~~~~~~-----~-~~dvviIDE~Q~~~~------------~~~~~l~~l~~~-~~~Vi~~G 110 (184)
T 2orw_A 56 -NGVEAHVIE-----RPEEMRKYIE-----E-DTRGVFIDEVQFFNP------------SLFEVVKDLLDR-GIDVFCAG 110 (184)
T ss_dssp --CEECEEES-----SGGGGGGGCC-----T-TEEEEEECCGGGSCT------------THHHHHHHHHHT-TCEEEEEE
T ss_pred -CceeeEEEC-----CHHHHHHHhc-----C-CCCEEEEECcccCCH------------HHHHHHHHHHHC-CCCEEEEe
Confidence 000011111 1222222111 1 489999999998642 134466667666 99999887
Q ss_pred cCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEe
Q psy2891 373 QLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIY 408 (452)
Q Consensus 373 ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~ 408 (452)
.... . +.| -+..+..+-..||.|.-+.
T Consensus 111 l~~~-f-----~~~---~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 111 LDLT-H-----KQN---PFETTALLLSLADTVIKKK 137 (184)
T ss_dssp ESBC-T-----TSC---BCHHHHHHHHHCSEEEECC
T ss_pred eccc-c-----ccC---CccchHHHHHHhhheEEee
Confidence 6321 1 111 1333445556688886553
No 40
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.15 E-value=8.8e-06 Score=71.17 Aligned_cols=41 Identities=20% Similarity=0.321 Sum_probs=34.8
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
.+|..++|.|+||+|||+++..++..+....|..|+|++..
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~ 76 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTK 76 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 45789999999999999999999988864578889997643
No 41
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.05 E-value=2.9e-05 Score=69.99 Aligned_cols=41 Identities=22% Similarity=0.252 Sum_probs=35.7
Q ss_pred CCCcE-EEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC
Q psy2891 212 QPGDL-IIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM 253 (452)
Q Consensus 212 ~~G~l-~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~ 253 (452)
.+|.+ +++.|+||+|||+++++++..++. .|.+|+++..+.
T Consensus 3 ~~g~l~I~~~~kgGvGKTt~a~~la~~l~~-~G~~V~v~d~D~ 44 (228)
T 2r8r_A 3 ARGRLKVFLGAAPGVGKTYAMLQAAHAQLR-QGVRVMAGVVET 44 (228)
T ss_dssp CCCCEEEEEESSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCC
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHHHH-CCCCEEEEEeCC
Confidence 35666 778999999999999999999975 799999998886
No 42
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.03 E-value=0.00035 Score=69.51 Aligned_cols=119 Identities=12% Similarity=0.059 Sum_probs=70.1
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHH--HHHHhCCCCccccccCCCCcchHHHHHHH
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMR--MLGSVGKLDQHKLRTGRLSSDDWPRINDS 290 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R--~~a~~~~i~~~~i~~g~l~~~~~~~~~~a 290 (452)
++.+++++|++|+||||++..+|..++. .|.+|++++++.-....... .++...|++......+ .++ ......+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~-~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~-~dp--~~i~~~a 171 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK-RGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNN-QNP--IEIAKKG 171 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTC-SCH--HHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEecCccchhHHHHHHHHHHhcCCceeecccc-CCH--HHHHHHH
Confidence 5779999999999999999999999864 78999999988654333322 2334456654432221 111 1223345
Q ss_pred HHHHh--CCCeEEEcCCCC-C---HHHHHHHHHHHHHHcC-CccEEEEcCcc
Q psy2891 291 IKKIN--KSQLYIDETPSL-N---VIELRANSRRLSRQCG-KIGVIIIDYLQ 335 (452)
Q Consensus 291 ~~~l~--~~~l~i~~~~~~-t---~~~i~~~i~~~~~~~~-~~~~vvID~l~ 335 (452)
...+. +..+.|.|+++. . -..+...+..+.+... ..-++|+|...
T Consensus 172 l~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 172 VDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp HHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred HHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCcc
Confidence 55554 456666666543 1 1223333333333222 24577888753
No 43
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=98.02 E-value=1.7e-05 Score=70.93 Aligned_cols=138 Identities=13% Similarity=0.149 Sum_probs=79.4
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDS 290 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a 290 (452)
-.+|.+.+++|+.|+|||+.+++.+.++. ..|.+|++|....+.+.-...+.+ ..|+....+.
T Consensus 25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~~-~~g~kVli~k~~~d~R~ge~~i~s-~~g~~~~a~~--------------- 87 (214)
T 2j9r_A 25 NQNGWIEVICGSMFSGKSEELIRRVRRTQ-FAKQHAIVFKPCIDNRYSEEDVVS-HNGLKVKAVP--------------- 87 (214)
T ss_dssp CCSCEEEEEECSTTSCHHHHHHHHHHHHH-HTTCCEEEEECC------------------CCEEE---------------
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEEeccCCcchHHHHHh-hcCCeeEEee---------------
Confidence 35689999999999999999999999996 579999999765543211111111 1122211110
Q ss_pred HHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEE
Q psy2891 291 IKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILA 370 (452)
Q Consensus 291 ~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~ 370 (452)
+ .. ..++.+.+. +++++|+||-.|.+... .+..|..++.+ +++||+
T Consensus 88 ----------~-~~----~~~~~~~~~------~~~dvViIDEaQF~~~~------------~V~~l~~l~~~-~~~Vi~ 133 (214)
T 2j9r_A 88 ----------V-SA----SKDIFKHIT------EEMDVIAIDEVQFFDGD------------IVEVVQVLANR-GYRVIV 133 (214)
T ss_dssp ----------C-SS----GGGGGGGCC------SSCCEEEECCGGGSCTT------------HHHHHHHHHHT-TCEEEE
T ss_pred ----------c-CC----HHHHHHHHh------cCCCEEEEECcccCCHH------------HHHHHHHHhhC-CCEEEE
Confidence 0 00 012221111 14899999999986531 12456666654 999998
Q ss_pred EecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEe
Q psy2891 371 LSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIY 408 (452)
Q Consensus 371 l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~ 408 (452)
..- ..+... +| +.++..+-..||.|.-|.
T Consensus 134 ~Gl-~~DF~~----~~----F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 134 AGL-DQDFRG----LP----FGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp EEC-SBCTTS----CB----CTTHHHHHHHCSEEEECC
T ss_pred Eec-cccccc----Cc----cccHHHHHHhcccEEeee
Confidence 763 222211 12 344666778899987764
No 44
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.02 E-value=0.00075 Score=67.17 Aligned_cols=145 Identities=10% Similarity=0.091 Sum_probs=78.8
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHH--HHHHHhCCCCccccccCCCCcchHHHHHHH
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAM--RMLGSVGKLDQHKLRTGRLSSDDWPRINDS 290 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~--R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a 290 (452)
++.+++++|+||+||||++..+|..++ +.|.+|++++++.-...... +.++...+++......+ .+-..-+.++
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~-~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~---~dp~~i~~~a 174 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ-KRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQE---KDAIKLAKEG 174 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTC---CCHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH-HCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCC---CCHHHHHHHH
Confidence 457999999999999999999999886 47999999998854322222 23344455554322111 1111222344
Q ss_pred HHHHhC--CCeEEEcCCCCC--HHHHHHHHHHHHHHcC-CccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhC
Q psy2891 291 IKKINK--SQLYIDETPSLN--VIELRANSRRLSRQCG-KIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEIN 365 (452)
Q Consensus 291 ~~~l~~--~~l~i~~~~~~t--~~~i~~~i~~~~~~~~-~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~ 365 (452)
+..+.. ..+.|.|+++.. -..+...++.+..... ..-++|+|...- .+. ....+.+....+
T Consensus 175 l~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~g-------q~a-------~~~a~~f~~~~~ 240 (443)
T 3dm5_A 175 VDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIG-------QQA-------YNQALAFKEATP 240 (443)
T ss_dssp HHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGG-------GGH-------HHHHHHHHHSCT
T ss_pred HHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCc-------hhH-------HHHHHHHHhhCC
Confidence 444432 456665654432 1233333433332221 234666775431 111 112244445567
Q ss_pred CcEEEEecCC
Q psy2891 366 CPILALSQLN 375 (452)
Q Consensus 366 i~vi~l~ql~ 375 (452)
+..+++..+.
T Consensus 241 i~gVIlTKlD 250 (443)
T 3dm5_A 241 IGSIIVTKLD 250 (443)
T ss_dssp TEEEEEECCS
T ss_pred CeEEEEECCC
Confidence 7777776654
No 45
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.97 E-value=1.8e-05 Score=69.93 Aligned_cols=137 Identities=15% Similarity=0.159 Sum_probs=80.4
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccccc-CCCCcchHHHHHH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRT-GRLSSDDWPRIND 289 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~-g~l~~~~~~~~~~ 289 (452)
..+|.+.++.|++|+|||+.+++++.++. ..|.+|+++....+. |. +. ..+.+ ..++.
T Consensus 5 ~~~g~i~v~~G~mgsGKTT~ll~~a~r~~-~~g~kV~v~k~~~d~-----r~-----~~--~~i~s~~g~~~-------- 63 (191)
T 1xx6_A 5 KDHGWVEVIVGPMYSGKSEELIRRIRRAK-IAKQKIQVFKPEIDN-----RY-----SK--EDVVSHMGEKE-------- 63 (191)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEEC-------------------CEEECTTSCEE--------
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEEeccCc-----cc-----hH--HHHHhhcCCce--------
Confidence 35688999999999999999999999986 578999999754331 11 00 00100 00000
Q ss_pred HHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEE
Q psy2891 290 SIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPIL 369 (452)
Q Consensus 290 a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi 369 (452)
..+.+. .. .++.+.+. ++.++|+||-.|.+.. .....|+.++.. +++||
T Consensus 64 -------~a~~~~-~~----~~i~~~~~------~~~dvViIDEaqfl~~------------~~v~~l~~l~~~-~~~Vi 112 (191)
T 1xx6_A 64 -------QAVAIK-NS----REILKYFE------EDTEVIAIDEVQFFDD------------EIVEIVNKIAES-GRRVI 112 (191)
T ss_dssp -------ECEEES-SS----THHHHHCC------TTCSEEEECSGGGSCT------------HHHHHHHHHHHT-TCEEE
T ss_pred -------eeEeeC-CH----HHHHHHHh------ccCCEEEEECCCCCCH------------HHHHHHHHHHhC-CCEEE
Confidence 011111 11 23333221 1389999999988542 123466777665 99999
Q ss_pred EEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEe
Q psy2891 370 ALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIY 408 (452)
Q Consensus 370 ~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~ 408 (452)
+... ..+... +| +.++..+-..||.|.-+.
T Consensus 113 ~~Gl-~~df~~----~~----F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 113 CAGL-DMDFRG----KP----FGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp EEEC-SBCTTS----CB----CTTHHHHHHHCSEEEECC
T ss_pred EEec-cccccc----Cc----CccHHHHHHHcccEEeee
Confidence 9753 222211 12 344667778899986653
No 46
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.91 E-value=1.3e-05 Score=70.54 Aligned_cols=131 Identities=12% Similarity=0.135 Sum_probs=81.7
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHH---HHHHHHHHhCCCCccccccCCCCcchHHHHH
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQ---LAMRMLGSVGKLDQHKLRTGRLSSDDWPRIN 288 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~---i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~ 288 (452)
..|.+.+|.|+.|+|||+.+++.+.+... .+.+|+||+.+.+.+. +..|+- .
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~-~~~kvl~~kp~~D~R~~~~i~S~~g-----~------------------- 72 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQI-AQYKCLVIKYAKDTRYSSSFCTHDR-----N------------------- 72 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHH-TTCCEEEEEETTCCCGGGSCCHHHH-----H-------------------
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEEccccCccchhhhhhccC-----C-------------------
Confidence 35889999999999999999999998864 6899999998755321 111110 0
Q ss_pred HHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcE
Q psy2891 289 DSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPI 368 (452)
Q Consensus 289 ~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~v 368 (452)
.-.-+.+. +.+++... . . ++++|+||-.|.+ . + +...+..++ +.|++|
T Consensus 73 ------~~~A~~~~-----~~~d~~~~---~---~-~~DvIlIDEaQFf-k----~--------~ve~~~~L~-~~gk~V 120 (195)
T 1w4r_A 73 ------TMEALPAC-----LLRDVAQE---A---L-GVAVIGIDEGQFF-P----D--------IVEFCEAMA-NAGKTV 120 (195)
T ss_dssp ------HSEEEEES-----SGGGGHHH---H---H-TCSEEEESSGGGC-T----T--------HHHHHHHHH-HTTCEE
T ss_pred ------cccceecC-----CHHHHHHh---c---c-CCCEEEEEchhhh-H----H--------HHHHHHHHH-HCCCeE
Confidence 00001111 12234332 1 1 4899999999998 2 1 123446666 789998
Q ss_pred EEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEe
Q psy2891 369 LALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIY 408 (452)
Q Consensus 369 i~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~ 408 (452)
|+.. +..+...+ | +.++..+-..||.|.-|.
T Consensus 121 I~~G-L~~DF~~~----~----F~~~~~Ll~~Ad~v~kl~ 151 (195)
T 1w4r_A 121 IVAA-LDGTFQRK----P----FGAILNLVPLAESVVKLT 151 (195)
T ss_dssp EEEE-ESBCTTSS----B----CTTGGGGGGGCSEEEECC
T ss_pred EEEe-cccccccc----c----chhHHHHHHhcCeEEEee
Confidence 8876 33333221 2 344566677889887654
No 47
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.87 E-value=0.012 Score=55.73 Aligned_cols=44 Identities=16% Similarity=0.193 Sum_probs=37.4
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS 254 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~ 254 (452)
.+.+|+++.|.|++|+||||++..++..... .+.+|++...+..
T Consensus 96 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~-~~g~V~l~g~d~~ 139 (302)
T 3b9q_A 96 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTF 139 (302)
T ss_dssp CSSSCEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCS
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEEeeccc
Confidence 3678999999999999999999999988754 5678998877654
No 48
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.87 E-value=0.0011 Score=63.58 Aligned_cols=144 Identities=14% Similarity=0.144 Sum_probs=80.8
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCH---HHHHHHHHHHhCCCCccccccCCCCcchHHHH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSG---IQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRI 287 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~---~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~ 287 (452)
-.+|+++.|.|++|+||||++..++.... ..+.+|++...+... .+.. +.++...|++...-..+ +.+. ..+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~-~~~g~V~l~g~D~~r~~a~eql-~~~~~~~gv~~v~q~~~-~~p~--~~v 200 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLK-NHGFSVVIAASDTFRAGAIEQL-EEHAKRIGVKVIKHSYG-ADPA--AVA 200 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECCSSTTHHHHH-HHHHHHTTCEEECCCTT-CCHH--HHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCCEEEEEeecccccchHHHH-HHHHHHcCceEEecccc-CCHH--HHH
Confidence 46899999999999999999999998775 467789998877532 2212 22233455543221111 2211 112
Q ss_pred HHHHHH--HhCCCeEEEcCCCC------CHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHH
Q psy2891 288 NDSIKK--INKSQLYIDETPSL------NVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKG 359 (452)
Q Consensus 288 ~~a~~~--l~~~~l~i~~~~~~------t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~ 359 (452)
.+++.. ..+..+.+.|..+. .+.++....+.+ . ....+.++|.... ..+...++.
T Consensus 201 ~e~l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral-~--~de~llvLDa~t~--------------~~~~~~~~~ 263 (328)
T 3e70_C 201 YDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVT-K--PNLVIFVGDALAG--------------NAIVEQARQ 263 (328)
T ss_dssp HHHHHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHH-C--CSEEEEEEEGGGT--------------THHHHHHHH
T ss_pred HHHHHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHh-c--CCCCEEEEecHHH--------------HHHHHHHHH
Confidence 222211 12334444443322 123333322222 1 1356778885321 134456677
Q ss_pred HHHHhCCcEEEEecCCc
Q psy2891 360 LAKEINCPILALSQLNR 376 (452)
Q Consensus 360 lA~~~~i~vi~l~ql~r 376 (452)
+.++.++.+++++++..
T Consensus 264 ~~~~~~it~iilTKlD~ 280 (328)
T 3e70_C 264 FNEAVKIDGIILTKLDA 280 (328)
T ss_dssp HHHHSCCCEEEEECGGG
T ss_pred HHHhcCCCEEEEeCcCC
Confidence 88889999999998753
No 49
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.84 E-value=3.1e-05 Score=72.61 Aligned_cols=178 Identities=18% Similarity=0.237 Sum_probs=91.2
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC-C--CHHHHH--HHHHHHhCCCCcccccc
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME-M--SGIQLA--MRMLGSVGKLDQHKLRT 276 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E-~--~~~~i~--~R~~a~~~~i~~~~i~~ 276 (452)
..|+.+.--+++|+++.|.|++|+|||||+.-++--.. .....+++..+ . +..... .+-++....-+...+..
T Consensus 22 ~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~ 99 (275)
T 3gfo_A 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFS 99 (275)
T ss_dssp EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCS
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEECCcccccHHHHhCcEEEEEcCccccccc
Confidence 35777755689999999999999999999987764321 11122333322 1 222111 11111111110000000
Q ss_pred -------------CCCCcch-HHHHHHHHHHHhCCCeEEEcCCCCCHHHHHH--HHHHHHHHcCCccEEEEcCcchhccC
Q psy2891 277 -------------GRLSSDD-WPRINDSIKKINKSQLYIDETPSLNVIELRA--NSRRLSRQCGKIGVIIIDYLQLMSAN 340 (452)
Q Consensus 277 -------------g~l~~~~-~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~--~i~~~~~~~~~~~~vvID~l~~i~~~ 340 (452)
..++..+ .+++.++.+.+.-..+.-.....+|-.+-+. .++.+ -. +|+++++|--..
T Consensus 100 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL--~~-~P~lLlLDEPts---- 172 (275)
T 3gfo_A 100 ASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVL--VM-EPKVLILDEPTA---- 172 (275)
T ss_dssp SBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH--TT-CCSEEEEECTTT----
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHH--Hc-CCCEEEEECccc----
Confidence 0122221 2334444443321111001123456554433 33333 23 499999998432
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecC
Q psy2891 341 SRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRD 410 (452)
Q Consensus 341 ~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~ 410 (452)
+-+. .....+.+.|+.++++.|++||+++|--. .+++.||.|++|..-
T Consensus 173 --~LD~-~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-------------------~~~~~~drv~~l~~G 220 (275)
T 3gfo_A 173 --GLDP-MGVSEIMKLLVEMQKELGITIIIATHDID-------------------IVPLYCDNVFVMKEG 220 (275)
T ss_dssp --TCCH-HHHHHHHHHHHHHHHHHCCEEEEEESCCS-------------------SGGGGCSEEEEEETT
T ss_pred --cCCH-HHHHHHHHHHHHHHhhCCCEEEEEecCHH-------------------HHHHhCCEEEEEECC
Confidence 2222 23456778888887555999999988432 245568888888643
No 50
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.84 E-value=0.00018 Score=65.88 Aligned_cols=177 Identities=14% Similarity=0.177 Sum_probs=93.2
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC----CCCHHHHHH---HHHHHhCCCCc---
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM----EMSGIQLAM---RMLGSVGKLDQ--- 271 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~----E~~~~~i~~---R~~a~~~~i~~--- 271 (452)
..|+.+.--+.+|+++.|.|++|+|||||+.-++--.. ....-+++.. .++..+... +.++....-+.
T Consensus 19 ~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~ 96 (235)
T 3tif_A 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIP 96 (235)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCT
T ss_pred eeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCC
Confidence 35777755699999999999999999999876654321 1112233322 234444322 11221111000
Q ss_pred c-ccc-----------cCCCCc-chHHHHHHHHHHHhCCCeEEE-cCCCCCHHHHHH--HHHHHHHHcCCccEEEEcCcc
Q psy2891 272 H-KLR-----------TGRLSS-DDWPRINDSIKKINKSQLYID-ETPSLNVIELRA--NSRRLSRQCGKIGVIIIDYLQ 335 (452)
Q Consensus 272 ~-~i~-----------~g~l~~-~~~~~~~~a~~~l~~~~l~i~-~~~~~t~~~i~~--~i~~~~~~~~~~~~vvID~l~ 335 (452)
. .+. .+..+. +..+++.+..+.+.-...... ....+|-.+-+. .++.+. . +|+++++|--.
T Consensus 97 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~--~-~p~llllDEPt 173 (235)
T 3tif_A 97 LLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALA--N-NPPIILADQPT 173 (235)
T ss_dssp TSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHT--T-CCSEEEEESTT
T ss_pred CCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHH--c-CCCEEEEeCCc
Confidence 0 000 011221 122333333333321111101 123456554433 333332 3 49999999853
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecC
Q psy2891 336 LMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRD 410 (452)
Q Consensus 336 ~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~ 410 (452)
. +-+. .....+.+.|+.++++.+.+||+++|--. +...||.|+.|..-
T Consensus 174 s------~LD~-~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--------------------~~~~~d~i~~l~~G 221 (235)
T 3tif_A 174 W------ALDS-KTGEKIMQLLKKLNEEDGKTVVVVTHDIN--------------------VARFGERIIYLKDG 221 (235)
T ss_dssp T------TSCH-HHHHHHHHHHHHHHHHHCCEEEEECSCHH--------------------HHTTSSEEEEEETT
T ss_pred c------cCCH-HHHHHHHHHHHHHHHHcCCEEEEEcCCHH--------------------HHHhCCEEEEEECC
Confidence 2 1222 23457788888898888999999988311 23468999999654
No 51
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.82 E-value=6.1e-05 Score=63.79 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=34.5
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM 253 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~ 253 (452)
+|+.++|.|++|+|||+++.-++.... ..|.+++|++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~-~~g~~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL-EAGKNAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH-TTTCCEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-hcCCcEEEEcHHH
Confidence 899999999999999999999988775 3677899987653
No 52
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.80 E-value=0.0002 Score=70.15 Aligned_cols=118 Identities=14% Similarity=0.060 Sum_probs=68.5
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhC-CCcEEEEeCCC--CHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIEN-KLPVAIFSMEM--SGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIK 292 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~-g~~vl~~s~E~--~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~ 292 (452)
.++|.|+||+|||+++..++.... .. +.+++|+++.. +...+...+.... +...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~l~~~l-~~~~--------------------- 102 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK-DKTTARFVYINGFIYRNFTAIIGEIARSL-NIPF--------------------- 102 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT-TSCCCEEEEEETTTCCSHHHHHHHHHHHT-TCCC---------------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh-hhcCeeEEEEeCccCCCHHHHHHHHHHHh-CccC---------------------
Confidence 799999999999999999887764 23 57889988533 3445555544321 2110
Q ss_pred HHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHH--hCCcEEE
Q psy2891 293 KINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKE--INCPILA 370 (452)
Q Consensus 293 ~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~--~~i~vi~ 370 (452)
.....+..++...+..+....+++.+||||.++.+.. ..+..+.+.+..+... .++++|+
T Consensus 103 ----------~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~--------~~~~~L~~~~~~~~~~~~~~~~iI~ 164 (389)
T 1fnn_A 103 ----------PRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAP--------DILSTFIRLGQEADKLGAFRIALVI 164 (389)
T ss_dssp ----------CSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCH--------HHHHHHHHHTTCHHHHSSCCEEEEE
T ss_pred ----------CCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccch--------HHHHHHHHHHHhCCCCCcCCEEEEE
Confidence 0112234444444444443333478999999887721 1222333333322221 4788888
Q ss_pred EecC
Q psy2891 371 LSQL 374 (452)
Q Consensus 371 l~ql 374 (452)
+++.
T Consensus 165 ~~~~ 168 (389)
T 1fnn_A 165 VGHN 168 (389)
T ss_dssp EESS
T ss_pred EECC
Confidence 7654
No 53
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.79 E-value=0.02 Score=55.48 Aligned_cols=43 Identities=14% Similarity=0.146 Sum_probs=37.1
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS 254 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~ 254 (452)
+.+|+++.|.|++|+||||++..++..... .+.+|++...+..
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~-~~G~V~l~g~D~~ 196 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTF 196 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCS
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccc-cCCEEEEeccccc
Confidence 678999999999999999999999988754 5778999887754
No 54
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.78 E-value=0.0016 Score=61.66 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=36.2
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS 254 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~ 254 (452)
|.++.+.|++|+||||++.++|...+. .|.+|++++.+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~-~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK-KGFKVGLVGADVY 137 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH-TTCCEEEEECCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence 789999999999999999999999875 6899999999854
No 55
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.77 E-value=0.0022 Score=63.90 Aligned_cols=146 Identities=14% Similarity=0.204 Sum_probs=79.2
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHH--HHHHhCCCCccccccCCCCcchHHHHHHHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMR--MLGSVGKLDQHKLRTGRLSSDDWPRINDSI 291 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R--~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~ 291 (452)
..+++++|.+|+||||++.++|..++.+.|++|+.++++.-....... ..+...+++.-.... ..++.+ .+..++
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~-~~dp~~--i~~~~l 176 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDV-GQKPVD--IVNAAL 176 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCS-SSCHHH--HHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCC-CCCHHH--HHHHHH
Confidence 457888899999999999999999975339999999999532211111 122234444321111 122222 224455
Q ss_pred HHHh--CCCeEEEcCCC-CCH-HHHHHHHHHHHHHcC-CccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCC
Q psy2891 292 KKIN--KSQLYIDETPS-LNV-IELRANSRRLSRQCG-KIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINC 366 (452)
Q Consensus 292 ~~l~--~~~l~i~~~~~-~t~-~~i~~~i~~~~~~~~-~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i 366 (452)
..+. +..+.|.|+++ ... +.+...+..+..... ..-++|+|... . .+- ...++.+....++
T Consensus 177 ~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~---g----~~~-------~~~~~~f~~~l~i 242 (433)
T 2xxa_A 177 KEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMT---G----QDA-------ANTAKAFNEALPL 242 (433)
T ss_dssp HHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTB---C----TTH-------HHHHHHHHHHSCC
T ss_pred HHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecch---h----HHH-------HHHHHHHhccCCC
Confidence 5543 44666666654 332 344444444433222 13355678632 1 111 1223444456777
Q ss_pred cEEEEecCCc
Q psy2891 367 PILALSQLNR 376 (452)
Q Consensus 367 ~vi~l~ql~r 376 (452)
..++++.+..
T Consensus 243 ~gvVlnK~D~ 252 (433)
T 2xxa_A 243 TGVVLTKVDG 252 (433)
T ss_dssp CCEEEECTTS
T ss_pred eEEEEecCCC
Confidence 7777777654
No 56
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.77 E-value=0.0026 Score=63.12 Aligned_cols=145 Identities=15% Similarity=0.178 Sum_probs=80.7
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHH--HHHHHhCCCCccccccCCCCcchHHHHHHH
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAM--RMLGSVGKLDQHKLRTGRLSSDDWPRINDS 290 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~--R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a 290 (452)
+|.++.++|++|+||||++..+|...+. .|.+|+++.++........ +.++...+++.-....+ .++.+. +.++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~-~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~-~~p~~i--~~~~ 172 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDG-ESPESI--RRRV 172 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTT-CCHHHH--HHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCC-CCHHHH--HHHH
Confidence 6789999999999999999999999874 6899999999865432221 22333345554221111 122222 2445
Q ss_pred HHHH--hCCCeEEEcCCCC-CH-HHHHHHHHHHHHHcC-CccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhC
Q psy2891 291 IKKI--NKSQLYIDETPSL-NV-IELRANSRRLSRQCG-KIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEIN 365 (452)
Q Consensus 291 ~~~l--~~~~l~i~~~~~~-t~-~~i~~~i~~~~~~~~-~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~ 365 (452)
++.+ .+..+.|.|+++. .. ..+...+..+..... ..-++|+|... . . .....++.+....+
T Consensus 173 l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~t----g---q-------~av~~a~~f~~~l~ 238 (425)
T 2ffh_A 173 EEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT----G---Q-------EALSVARAFDEKVG 238 (425)
T ss_dssp HHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG----T---T-------HHHHHHHHHHHHTC
T ss_pred HHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccc----h---H-------HHHHHHHHHHhcCC
Confidence 5555 3445666665532 21 223333333322211 23467777631 1 1 11123345555677
Q ss_pred CcEEEEecCC
Q psy2891 366 CPILALSQLN 375 (452)
Q Consensus 366 i~vi~l~ql~ 375 (452)
+..++++.+.
T Consensus 239 i~GVIlTKlD 248 (425)
T 2ffh_A 239 VTGLVLTKLD 248 (425)
T ss_dssp CCEEEEESGG
T ss_pred ceEEEEeCcC
Confidence 8888887764
No 57
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.75 E-value=0.00049 Score=66.81 Aligned_cols=179 Identities=13% Similarity=0.134 Sum_probs=93.0
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEe---CCCCHHHHHH--HHHHHhCCCC----cc
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFS---MEMSGIQLAM--RMLGSVGKLD----QH 272 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s---~E~~~~~i~~--R~~a~~~~i~----~~ 272 (452)
..|+.+.--+.+|+++.|.|++|+|||||+.-++.-. .-....|.+.. ..++..++.. |-++....-. ..
T Consensus 42 ~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~-~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~ 120 (366)
T 3tui_C 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE-RPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSR 120 (366)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTS
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCC-CCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCC
Confidence 4577775568999999999999999999977665422 11111233211 1223333211 1111111000 00
Q ss_pred ccc--------cCCCCc-chHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHH--HHHHHHHHcCCccEEEEcCcchhccCC
Q psy2891 273 KLR--------TGRLSS-DDWPRINDSIKKINKSQLYIDETPSLNVIELRA--NSRRLSRQCGKIGVIIIDYLQLMSANS 341 (452)
Q Consensus 273 ~i~--------~g~l~~-~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~--~i~~~~~~~~~~~~vvID~l~~i~~~~ 341 (452)
.+. ....+. +..+++.++.+.+.-....-.....+|-.+-.. .++.+. . +|++++.|--..
T Consensus 121 TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~--~-~P~lLLlDEPTs----- 192 (366)
T 3tui_C 121 TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALA--S-NPKVLLCDQATS----- 192 (366)
T ss_dssp CHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTT--T-CCSEEEEESTTT-----
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHh--c-CCCEEEEECCCc-----
Confidence 000 001121 122344444444321111001123566554433 233332 3 599999998532
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecC
Q psy2891 342 RGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRD 410 (452)
Q Consensus 342 ~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~ 410 (452)
+-+. .....+...|+.+.++.|++||+++|--. .+.+.||.|++|..-
T Consensus 193 -~LD~-~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-------------------~~~~~aDrv~vl~~G 240 (366)
T 3tui_C 193 -ALDP-ATTRSILELLKDINRRLGLTILLITHEMD-------------------VVKRICDCVAVISNG 240 (366)
T ss_dssp -TSCH-HHHHHHHHHHHHHHHHSCCEEEEEESCHH-------------------HHHHHCSEEEEEETT
T ss_pred -cCCH-HHHHHHHHHHHHHHHhCCCEEEEEecCHH-------------------HHHHhCCEEEEEECC
Confidence 1222 23457788899999999999999998321 355668888877653
No 58
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.75 E-value=6.3e-05 Score=70.21 Aligned_cols=179 Identities=12% Similarity=0.094 Sum_probs=95.7
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC----CCCHHHHHHHHHHHhCCCC-------
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM----EMSGIQLAMRMLGSVGKLD------- 270 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~----E~~~~~i~~R~~a~~~~i~------- 270 (452)
+.|+.+.--+.+|+++.|.|++|+|||||+.-++--..- ....| ++.. ..+..++.. .++....-+
T Consensus 25 ~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~I-~~~g~~~~~~~~~~~~~-~i~~v~q~~~~~~~~t 101 (266)
T 4g1u_C 25 ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP-SHGEC-HLLGQNLNSWQPKALAR-TRAVMRQYSELAFPFS 101 (266)
T ss_dssp EEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCC-SSCEE-EETTEETTTSCHHHHHH-HEEEECSCCCCCSCCB
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCcEE-EECCEECCcCCHHHHhh-eEEEEecCCccCCCCC
Confidence 456666445899999999999999999998877653311 12233 3332 233333322 222111100
Q ss_pred ccc-cccC--CC-CcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHH--HHHHHHHHH----cCCccEEEEcCcchhccC
Q psy2891 271 QHK-LRTG--RL-SSDDWPRINDSIKKINKSQLYIDETPSLNVIELR--ANSRRLSRQ----CGKIGVIIIDYLQLMSAN 340 (452)
Q Consensus 271 ~~~-i~~g--~l-~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~--~~i~~~~~~----~~~~~~vvID~l~~i~~~ 340 (452)
... +.-+ .. ..+..+++.++.+.+.-..+.-.....+|-.+-. ..++.+... .+ |+++++|--..
T Consensus 102 v~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~-p~lLllDEPts---- 176 (266)
T 4g1u_C 102 VSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPT-PRWLFLDEPTS---- 176 (266)
T ss_dssp HHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCC-CEEEEECCCCS----
T ss_pred HHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCC-CCEEEEeCccc----
Confidence 000 0000 01 1223344555555442111100011245654433 344444430 13 99999998432
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecC
Q psy2891 341 SRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRD 410 (452)
Q Consensus 341 ~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~ 410 (452)
+-+. .....+.+.|+.++++.+++||+++|--. .+.+.||.|++|..-
T Consensus 177 --~LD~-~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-------------------~~~~~~d~v~vl~~G 224 (266)
T 4g1u_C 177 --ALDL-YHQQHTLRLLRQLTRQEPLAVCCVLHDLN-------------------LAALYADRIMLLAQG 224 (266)
T ss_dssp --SCCH-HHHHHHHHHHHHHHHHSSEEEEEECSCHH-------------------HHHHHCSEEEEEETT
T ss_pred --cCCH-HHHHHHHHHHHHHHHcCCCEEEEEEcCHH-------------------HHHHhCCEEEEEECC
Confidence 2222 23457788888998888889999988321 356678999988754
No 59
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.75 E-value=7.2e-05 Score=66.77 Aligned_cols=138 Identities=14% Similarity=0.137 Sum_probs=83.4
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDS 290 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a 290 (452)
-..|.+.+|+|+-|+|||+.+++.+.++. ..|.+|++|....+...-... ++...|+....+
T Consensus 25 ~~~G~I~vitG~M~sGKTT~Llr~~~r~~-~~g~kvli~kp~~D~R~~~~~-I~Sr~G~~~~a~---------------- 86 (219)
T 3e2i_A 25 YHSGWIECITGSMFSGKSEELIRRLRRGI-YAKQKVVVFKPAIDDRYHKEK-VVSHNGNAIEAI---------------- 86 (219)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHHHHH-HTTCCEEEEEEC------------CBTTBCCEEE----------------
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHH-HcCCceEEEEeccCCcchhhh-HHHhcCCceeeE----------------
Confidence 35688999999999999999999988875 578999999877654322222 222233222211
Q ss_pred HHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEE
Q psy2891 291 IKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILA 370 (452)
Q Consensus 291 ~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~ 370 (452)
.+.+ ..+|...+ . +++++|+||-.|.+.. .+...|..+| +.|++|++
T Consensus 87 ---------~v~~-----~~di~~~i-----~-~~~dvV~IDEaQFf~~------------~~v~~l~~la-~~gi~Vi~ 133 (219)
T 3e2i_A 87 ---------NISK-----ASEIMTHD-----L-TNVDVIGIDEVQFFDD------------EIVSIVEKLS-ADGHRVIV 133 (219)
T ss_dssp ---------EESS-----GGGGGGSC-----C-TTCSEEEECCGGGSCT------------HHHHHHHHHH-HTTCEEEE
T ss_pred ---------EeCC-----HHHHHHHH-----h-cCCCEEEEechhcCCH------------HHHHHHHHHH-HCCCEEEE
Confidence 1111 11222111 1 1489999999998753 3456778888 68999888
Q ss_pred EecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEe
Q psy2891 371 LSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIY 408 (452)
Q Consensus 371 l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~ 408 (452)
.. |..+... +| +.++..+-..||.|.-|.
T Consensus 134 ~G-Ld~DF~~----~~----F~~~~~Ll~~Ad~v~kl~ 162 (219)
T 3e2i_A 134 AG-LDMDFRG----EP----FEPMPKLMAVSEQVTKLQ 162 (219)
T ss_dssp EE-ESBCTTS----CB----CTTHHHHHHHCSEEEEEC
T ss_pred ee-ccccccc----CC----CccHHHHHHhcceEEEee
Confidence 65 4433321 22 445667778899998775
No 60
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.71 E-value=0.00032 Score=66.46 Aligned_cols=90 Identities=11% Similarity=0.121 Sum_probs=56.3
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHH--HHHHhCCCCccccccCCCCcchHHHHHH
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMR--MLGSVGKLDQHKLRTGRLSSDDWPRIND 289 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R--~~a~~~~i~~~~i~~g~l~~~~~~~~~~ 289 (452)
.+|.++.+.|++|+||||++..+|..++...|.+|++++.+.......+. ..+...|++.... .+. ..+..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~----~~~---~~l~~ 175 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVC----YTK---EEFQQ 175 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBC----SSH---HHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEec----CCH---HHHHH
Confidence 36889999999999999999999998875578899999988632212211 2223334433211 111 23444
Q ss_pred HHHHHhCCCeEEEcCCCCC
Q psy2891 290 SIKKINKSQLYIDETPSLN 308 (452)
Q Consensus 290 a~~~l~~~~l~i~~~~~~t 308 (452)
++..+.+..+.|.|+++..
T Consensus 176 al~~~~~~dlvIiDT~G~~ 194 (296)
T 2px0_A 176 AKELFSEYDHVFVDTAGRN 194 (296)
T ss_dssp HHHHGGGSSEEEEECCCCC
T ss_pred HHHHhcCCCEEEEeCCCCC
Confidence 5555555566666655443
No 61
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.69 E-value=0.001 Score=63.22 Aligned_cols=147 Identities=15% Similarity=0.148 Sum_probs=81.7
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH--HHHhCCCCccccccCCCCcchHHHH-
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRM--LGSVGKLDQHKLRTGRLSSDDWPRI- 287 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~--~a~~~~i~~~~i~~g~l~~~~~~~~- 287 (452)
..+|.+++|.|++|+||||++..+|...+. .|.+|+++..+.-.....+.+ ++...+++.- ..+ +..+..++
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~-~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~~~--s~~~~~~v~ 175 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVD-EGKSVVLAAADTFRAAAIEQLKIWGERVGATVI--SHS--EGADPAAVA 175 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEE--CCS--TTCCHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHh-cCCEEEEEccccccHHHHHHHHHHHHHcCCcEE--ecC--CccCHHHHH
Confidence 457889999999999999999999998874 688999999886543222221 2223344431 111 11222222
Q ss_pred HHHHHH--HhCCCeEEEcCCCC--CHHHHHHHHHHHHHHc-----CCcc--EEEEcCcchhccCCCCCCHHHHHHHHHHH
Q psy2891 288 NDSIKK--INKSQLYIDETPSL--NVIELRANSRRLSRQC-----GKIG--VIIIDYLQLMSANSRGENRATEISEISRN 356 (452)
Q Consensus 288 ~~a~~~--l~~~~l~i~~~~~~--t~~~i~~~i~~~~~~~-----~~~~--~vvID~l~~i~~~~~~~~~~~~~~~i~~~ 356 (452)
.+++.. ..+..+.+.|++.. .-+.+...+.++.... ..++ ++|+|... .... .+.
T Consensus 176 ~~al~~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t----------~~~~----l~~ 241 (306)
T 1vma_A 176 FDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATT----------GQNG----LVQ 241 (306)
T ss_dssp HHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGG----------HHHH----HHH
T ss_pred HHHHHHHHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCC----------CHHH----HHH
Confidence 222222 23445666665533 2344444444444321 1244 56666631 1111 223
Q ss_pred HHHHHHHhCCcEEEEecCCc
Q psy2891 357 LKGLAKEINCPILALSQLNR 376 (452)
Q Consensus 357 Lk~lA~~~~i~vi~l~ql~r 376 (452)
.+.+.+..++..++++.+..
T Consensus 242 a~~~~~~~~i~gvVlTk~D~ 261 (306)
T 1vma_A 242 AKIFKEAVNVTGIILTKLDG 261 (306)
T ss_dssp HHHHHHHSCCCEEEEECGGG
T ss_pred HHHHHhcCCCCEEEEeCCCC
Confidence 34455568888888877754
No 62
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.68 E-value=0.00032 Score=68.62 Aligned_cols=123 Identities=11% Similarity=0.140 Sum_probs=69.5
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHh-----CCCcEEEEeCCC--CHHHHHHHHHHHhCCCCccccccCCCCcchHH
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIE-----NKLPVAIFSMEM--SGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWP 285 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~-----~g~~vl~~s~E~--~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~ 285 (452)
.+..++|.|+||+|||+++..++...... .+.+++|+++.. +...+...+.... +...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l-~~~~-------------- 107 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAV-GVRV-------------- 107 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHH-SCCC--------------
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHh-CCCC--------------
Confidence 34579999999999999999999877432 156788887653 4444555544322 1110
Q ss_pred HHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHH---
Q psy2891 286 RINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAK--- 362 (452)
Q Consensus 286 ~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~--- 362 (452)
.....+..++...+.......+++.++|||.++.+.... ... .....|.....
T Consensus 108 -----------------~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---~~~----~~l~~l~~~~~~~~ 163 (387)
T 2v1u_A 108 -----------------PFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---GGQ----DLLYRITRINQELG 163 (387)
T ss_dssp -----------------CSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---THH----HHHHHHHHGGGCC-
T ss_pred -----------------CCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---CCC----hHHHhHhhchhhcC
Confidence 011233445444444443333347799999999886531 011 22233333222
Q ss_pred -HhCCcEEEEecC
Q psy2891 363 -EINCPILALSQL 374 (452)
Q Consensus 363 -~~~i~vi~l~ql 374 (452)
..++.+|+++.-
T Consensus 164 ~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 164 DRVWVSLVGITNS 176 (387)
T ss_dssp ----CEEEEECSC
T ss_pred CCceEEEEEEECC
Confidence 456777777643
No 63
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.65 E-value=0.00015 Score=70.97 Aligned_cols=126 Identities=15% Similarity=0.179 Sum_probs=69.2
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHhC--CCcEEEEeCC--CCHHHHHHHHHHHhCCCCccccccCCCCcchHHHH
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIEN--KLPVAIFSME--MSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRI 287 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~--g~~vl~~s~E--~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~ 287 (452)
.++..++|.|+||+|||+++..++....... +.+++|+++. .+...+...+... .+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~-l~~~~---------------- 105 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLES-LDVKV---------------- 105 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTT-TSCCC----------------
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHH-hCCCC----------------
Confidence 3466899999999999999999988765332 6788888753 2233333333211 01100
Q ss_pred HHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCc
Q psy2891 288 NDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCP 367 (452)
Q Consensus 288 ~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~ 367 (452)
.....+..++...+.......+++.+||||.++.+.... ... .+..+.+.+..+ ...++.
T Consensus 106 ---------------~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~-~~~---~l~~l~~~~~~~-~~~~~~ 165 (386)
T 2qby_A 106 ---------------PFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKY-NDD---ILYKLSRINSEV-NKSKIS 165 (386)
T ss_dssp ---------------CSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSS-CST---HHHHHHHHHHSC-CC--EE
T ss_pred ---------------CCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccC-cCH---HHHHHhhchhhc-CCCeEE
Confidence 011234455555554444444347899999999887532 011 122222222111 344677
Q ss_pred EEEEecC
Q psy2891 368 ILALSQL 374 (452)
Q Consensus 368 vi~l~ql 374 (452)
+|++++-
T Consensus 166 ~I~~~~~ 172 (386)
T 2qby_A 166 FIGITND 172 (386)
T ss_dssp EEEEESC
T ss_pred EEEEECC
Confidence 7777753
No 64
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.62 E-value=0.00037 Score=64.61 Aligned_cols=174 Identities=14% Similarity=0.144 Sum_probs=89.7
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC----CCHHHHHHHHHHHhCCCC-------c
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME----MSGIQLAMRMLGSVGKLD-------Q 271 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E----~~~~~i~~R~~a~~~~i~-------~ 271 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++--.. .....+++... .+..+...+.++....-+ .
T Consensus 22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 99 (257)
T 1g6h_A 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTV 99 (257)
T ss_dssp EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBH
T ss_pred eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcH
Confidence 4666655689999999999999999999987664321 11122333221 122222122111111100 0
Q ss_pred c-ccccC------C-----------CC-cchHHHHHHHHHHHhCCCeEEE-cCCCCCHHHHHH--HHHHHHHHcCCccEE
Q psy2891 272 H-KLRTG------R-----------LS-SDDWPRINDSIKKINKSQLYID-ETPSLNVIELRA--NSRRLSRQCGKIGVI 329 (452)
Q Consensus 272 ~-~i~~g------~-----------l~-~~~~~~~~~a~~~l~~~~l~i~-~~~~~t~~~i~~--~i~~~~~~~~~~~~v 329 (452)
. .+.-+ . .. .+...++.+..+.+.-..+ .. ....+|-.+-+. .++.+. . +|+++
T Consensus 100 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGqkQrv~iAraL~--~-~p~ll 175 (257)
T 1g6h_A 100 LENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL-YDRKAGELSGGQMKLVEIGRALM--T-NPKMI 175 (257)
T ss_dssp HHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGG-TTSBGGGSCHHHHHHHHHHHHHH--T-CCSEE
T ss_pred HHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchh-hCCCchhCCHHHHHHHHHHHHHH--c-CCCEE
Confidence 0 00000 0 11 1122344444444321010 11 122466554443 333332 3 49999
Q ss_pred EEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEec
Q psy2891 330 IIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYR 409 (452)
Q Consensus 330 vID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r 409 (452)
++|--.. +-+. .....+.+.|+.++++ |.+||+++|--. .++..||.++++..
T Consensus 176 lLDEPts------~LD~-~~~~~l~~~l~~l~~~-g~tvi~vtHd~~-------------------~~~~~~d~v~~l~~ 228 (257)
T 1g6h_A 176 VMDEPIA------GVAP-GLAHDIFNHVLELKAK-GITFLIIEHRLD-------------------IVLNYIDHLYVMFN 228 (257)
T ss_dssp EEESTTT------TCCH-HHHHHHHHHHHHHHHT-TCEEEEECSCCS-------------------TTGGGCSEEEEEET
T ss_pred EEeCCcc------CCCH-HHHHHHHHHHHHHHHC-CCEEEEEecCHH-------------------HHHHhCCEEEEEEC
Confidence 9998532 1222 2345677788888766 999999988432 24567899988854
No 65
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.61 E-value=0.00093 Score=67.23 Aligned_cols=147 Identities=16% Similarity=0.182 Sum_probs=79.1
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHH----HHHHHHHHHhCCCCccccccCCCCcchHH
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGI----QLAMRMLGSVGKLDQHKLRTGRLSSDDWP 285 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~----~i~~R~~a~~~~i~~~~i~~g~l~~~~~~ 285 (452)
.+.+|+++.|.|++|+||||++..++.... ..+..|++...+.... ++.. ++...++.+-.-..+ +.. ..
T Consensus 289 ~i~~GeVI~LVGpNGSGKTTLl~~LAgll~-~~~G~V~l~g~D~~r~aa~eQL~~--~~~r~~I~vV~Q~~~-~~p--~~ 362 (503)
T 2yhs_A 289 EGKAPFVILMVGVNGVGKTTTIGKLARQFE-QQGKSVMLAAGDTFRAAAVEQLQV--WGQRNNIPVIAQHTG-ADS--AS 362 (503)
T ss_dssp CSCTTEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEECCCTTCHHHHHHHHH--HHHHHTCCEECCSTT-CCH--HH
T ss_pred eccCCeEEEEECCCcccHHHHHHHHHHHhh-hcCCeEEEecCcccchhhHHHHHH--HHHhcCceEEecccC-cCH--HH
Confidence 367899999999999999999999998775 3567898887765321 2211 111123332211111 111 11
Q ss_pred HHHHHHHHH--hCCCeEEEcCCCC--CHHHHHHHHHHH---HHHc--CCcc--EEEEcCcchhccCCCCCCHHHHHHHHH
Q psy2891 286 RINDSIKKI--NKSQLYIDETPSL--NVIELRANSRRL---SRQC--GKIG--VIIIDYLQLMSANSRGENRATEISEIS 354 (452)
Q Consensus 286 ~~~~a~~~l--~~~~l~i~~~~~~--t~~~i~~~i~~~---~~~~--~~~~--~vvID~l~~i~~~~~~~~~~~~~~~i~ 354 (452)
.+.+.+... .+..+.+.|+.+. +-..+...+.++ .+.. ..++ ++++|... . + ..+
T Consensus 363 tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDatt---------G--q---~al 428 (503)
T 2yhs_A 363 VIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAST---------G--Q---NAV 428 (503)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGG---------T--H---HHH
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcc---------c--H---HHH
Confidence 222333222 3446667776543 223333332222 2211 1133 45666421 1 1 122
Q ss_pred HHHHHHHHHhCCcEEEEecCCc
Q psy2891 355 RNLKGLAKEINCPILALSQLNR 376 (452)
Q Consensus 355 ~~Lk~lA~~~~i~vi~l~ql~r 376 (452)
..++.+.+..+++.++++++..
T Consensus 429 ~~ak~f~~~~~itgvIlTKLD~ 450 (503)
T 2yhs_A 429 SQAKLFHEAVGLTGITLTKLDG 450 (503)
T ss_dssp HHHHHHHHHTCCSEEEEECGGG
T ss_pred HHHHHHHhhcCCCEEEEEcCCC
Confidence 4566677788999999999864
No 66
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.59 E-value=0.00027 Score=61.48 Aligned_cols=37 Identities=24% Similarity=0.358 Sum_probs=29.0
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHh------CCCcEEEEeC
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIE------NKLPVAIFSM 251 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~------~g~~vl~~s~ 251 (452)
..++|.|+||+|||+++..++...... .+.+++++++
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence 468999999999999999999887431 2567777665
No 67
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.59 E-value=0.00016 Score=70.92 Aligned_cols=52 Identities=17% Similarity=0.071 Sum_probs=38.7
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHh------C-CCcEEEEeCCC---CHHHHHHHHHHHh
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIE------N-KLPVAIFSMEM---SGIQLAMRMLGSV 266 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~------~-g~~vl~~s~E~---~~~~i~~R~~a~~ 266 (452)
..++|.|+||+|||+++..++..+... . +.+++|+++.. +...+...++...
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l 107 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKL 107 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHh
Confidence 489999999999999999998876432 1 67888887543 5566666665443
No 68
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.58 E-value=0.00035 Score=63.04 Aligned_cols=134 Identities=10% Similarity=0.112 Sum_probs=77.6
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHH
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSI 291 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~ 291 (452)
..|.+.+++|+.|+|||+.+++.+.++. ..|.+|++|....+.+.- ..+.+. .|+....+
T Consensus 17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~~-~~g~kvli~kp~~D~Ryg-~~i~sr-~G~~~~a~----------------- 76 (234)
T 2orv_A 17 TRGQIQVILGPMFSGKSTELMRRVRRFQ-IAQYKCLVIKYAKDTRYS-SSFCTH-DRNTMEAL----------------- 76 (234)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHHHH-TTTCCEEEEEETTCCCC-------------CEEE-----------------
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHH-HCCCeEEEEeecCCccch-HHHHhh-cCCeeEEE-----------------
Confidence 3588999999999999999999999986 579999999755442211 122211 12221111
Q ss_pred HHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEE
Q psy2891 292 KKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILAL 371 (452)
Q Consensus 292 ~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l 371 (452)
-+.. ..++.+.+ +++++|+||-.|.+. + +.++++.| .+.+++||+.
T Consensus 77 --------~i~~-----~~di~~~~-------~~~dvViIDEaQF~~------~----v~el~~~l----~~~gi~VI~~ 122 (234)
T 2orv_A 77 --------PACL-----LRDVAQEA-------LGVAVIGIDEGQFFP------D----IVEFCEAM----ANAGKTVIVA 122 (234)
T ss_dssp --------EESS-----GGGGHHHH-------TTCSEEEESSGGGCT------T----HHHHHHHH----HHTTCEEEEE
T ss_pred --------ecCC-----HHHHHHHh-------ccCCEEEEEchhhhh------h----HHHHHHHH----HhCCCEEEEE
Confidence 1111 12233222 248999999999873 1 33333333 3489998887
Q ss_pred ecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEe
Q psy2891 372 SQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIY 408 (452)
Q Consensus 372 ~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~ 408 (452)
.. +.+...+ | +.++..+-..||.|.-|.
T Consensus 123 GL-~~DF~~~----~----F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 123 AL-DGTFQRK----P----FGAILNLVPLAESVVKLT 150 (234)
T ss_dssp CC-SBCTTSS----B----CTTGGGGGGGCSEEEECC
T ss_pred ec-ccccccC----C----cccHHHHHHhcccEEeee
Confidence 63 3222211 1 334556677888886553
No 69
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.58 E-value=0.00032 Score=68.58 Aligned_cols=152 Identities=14% Similarity=0.144 Sum_probs=82.3
Q ss_pred ccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCC----------------CcEEEEeC------CCCHHHH
Q psy2891 201 FFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENK----------------LPVAIFSM------EMSGIQL 258 (452)
Q Consensus 201 ~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g----------------~~vl~~s~------E~~~~~i 258 (452)
...|+.+.--+.+|+++.|.|++|+||||++.-++--..-..| ..+.|+.- .|+..+.
T Consensus 16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~en 95 (381)
T 3rlf_A 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAEN 95 (381)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHH
T ss_pred EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHH
Confidence 3456776556899999999999999999998877653211011 12333311 1222221
Q ss_pred HHHHHHHhCCCCccccccCCCCcc-hHHHHHHHHHHHhCCCeEEE-cCCCCCHHHH--HHHHHHHHHHcCCccEEEEcCc
Q psy2891 259 AMRMLGSVGKLDQHKLRTGRLSSD-DWPRINDSIKKINKSQLYID-ETPSLNVIEL--RANSRRLSRQCGKIGVIIIDYL 334 (452)
Q Consensus 259 ~~R~~a~~~~i~~~~i~~g~l~~~-~~~~~~~a~~~l~~~~l~i~-~~~~~t~~~i--~~~i~~~~~~~~~~~~vvID~l 334 (452)
..--+. . ..++.. ..+++.++.+.+.-.. +.+ ....+|-.+- .+.++.+.. +|+++++|--
T Consensus 96 i~~~~~-~----------~~~~~~~~~~~v~~~l~~~~L~~-~~~r~p~~LSGGqrQRVaiArAL~~---~P~lLLLDEP 160 (381)
T 3rlf_A 96 MSFGLK-L----------AGAKKEVINQRVNQVAEVLQLAH-LLDRKPKALSGGQRQRVAIGRTLVA---EPSVFLLDEP 160 (381)
T ss_dssp HTHHHH-H----------TTCCHHHHHHHHHHHHHHTTCGG-GTTCCGGGSCHHHHHHHHHHHHHHH---CCSEEEEEST
T ss_pred HHHHHH-H----------cCCCHHHHHHHHHHHHHHcCCch-hhcCChhHCCHHHHHHHHHHHHHHc---CCCEEEEECC
Confidence 111000 0 112222 2234445544442111 111 1224554433 344444443 4999999984
Q ss_pred chhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecC
Q psy2891 335 QLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQL 374 (452)
Q Consensus 335 ~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql 374 (452)
.. +-+. .....+...|+.+.++.|+++|+++|-
T Consensus 161 ts------~LD~-~~~~~l~~~l~~l~~~~g~tii~vTHd 193 (381)
T 3rlf_A 161 LS------NLDA-ALRVQMRIEISRLHKRLGRTMIYVTHD 193 (381)
T ss_dssp TT------TSCH-HHHHHHHHHHHHHHHHHCCEEEEECSC
T ss_pred Cc------CCCH-HHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 21 1222 233567788889989999999999984
No 70
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.53 E-value=0.00081 Score=58.07 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=21.7
Q ss_pred CCCCcEEEEEeCCCCChhHHHHH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLN 233 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ 233 (452)
+++|+++.|.|++|+|||||+..
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 67899999999999999999986
No 71
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.53 E-value=0.00012 Score=67.86 Aligned_cols=175 Identities=14% Similarity=0.119 Sum_probs=91.8
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCC-----CcEEEEeCCCC---HHHHHHHHHHHhCCCCcccc
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENK-----LPVAIFSMEMS---GIQLAMRMLGSVGKLDQHKL 274 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g-----~~vl~~s~E~~---~~~i~~R~~a~~~~i~~~~i 274 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++--.--..| ..+.|+.-+.. ...+.+.+. ... .....+
T Consensus 20 vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~-~~~-~~~~~~ 97 (253)
T 2nq2_C 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVL-MGR-STHINT 97 (253)
T ss_dssp EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHH-GGG-GGGSCT
T ss_pred EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHH-Hhh-hhhccc
Confidence 46666446899999999999999999998876643211111 24566533211 011222221 100 000000
Q ss_pred ccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHH--HHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHH
Q psy2891 275 RTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRA--NSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISE 352 (452)
Q Consensus 275 ~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~--~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~ 352 (452)
. +....+..+++.++.+.+.-..+.-.....+|-.+-+. .++.+. . +|+++++|--.. +-+. .....
T Consensus 98 ~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~--~-~p~lllLDEPts------~LD~-~~~~~ 166 (253)
T 2nq2_C 98 F-AKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIA--S-ECKLILLDEPTS------ALDL-ANQDI 166 (253)
T ss_dssp T-CCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHH--T-TCSEEEESSSST------TSCH-HHHHH
T ss_pred c-cCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHH--c-CCCEEEEeCCcc------cCCH-HHHHH
Confidence 0 01122223445555554421111000123466555443 333333 3 499999998532 1222 23456
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEec
Q psy2891 353 ISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYR 409 (452)
Q Consensus 353 i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r 409 (452)
+.+.|+.++++.+.+||+++|--. .++..||.+++|..
T Consensus 167 l~~~l~~l~~~~g~tvi~vtHd~~-------------------~~~~~~d~v~~l~~ 204 (253)
T 2nq2_C 167 VLSLLIDLAQSQNMTVVFTTHQPN-------------------QVVAIANKTLLLNK 204 (253)
T ss_dssp HHHHHHHHHHTSCCEEEEEESCHH-------------------HHHHHCSEEEEEET
T ss_pred HHHHHHHHHHhcCCEEEEEecCHH-------------------HHHHhCCEEEEEeC
Confidence 777888887777999999988321 24556788887764
No 72
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.53 E-value=0.00019 Score=65.12 Aligned_cols=39 Identities=10% Similarity=-0.028 Sum_probs=33.7
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
++..++|.|+||+|||+++..++..... .+.++.|+++.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~-~~~~~~~~~~~ 89 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE-LERRSFYIPLG 89 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEEGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEEHH
Confidence 4568999999999999999999988864 57899999874
No 73
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.52 E-value=0.00049 Score=62.35 Aligned_cols=174 Identities=11% Similarity=0.040 Sum_probs=87.3
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC----CCCHHHHH---HHHHHHhCCCCccccc
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM----EMSGIQLA---MRMLGSVGKLDQHKLR 275 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~----E~~~~~i~---~R~~a~~~~i~~~~i~ 275 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++--. .....-+++.. ..+..+.. .+.++....-+ .+.
T Consensus 19 ~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~--~l~ 94 (224)
T 2pcj_A 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLD--APTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFH--YLI 94 (224)
T ss_dssp EEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSS--CCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSC--CCC
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCc--ccC
Confidence 466664568999999999999999999987665422 11112233322 12332221 12121111100 000
Q ss_pred c--------------CCCCc-chHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccC
Q psy2891 276 T--------------GRLSS-DDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSAN 340 (452)
Q Consensus 276 ~--------------g~l~~-~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~ 340 (452)
. ..+.. +..+++.++.+.+.-..+.-.....+|-.+-+...-...--. +|+++++|--..
T Consensus 95 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~-~p~lllLDEPt~---- 169 (224)
T 2pcj_A 95 PELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALAN-EPILLFADEPTG---- 169 (224)
T ss_dssp TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTT-CCSEEEEESTTT----
T ss_pred CCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHc-CCCEEEEeCCCC----
Confidence 0 00111 112233333333321111000122466555443322222223 599999998532
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEec
Q psy2891 341 SRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYR 409 (452)
Q Consensus 341 ~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r 409 (452)
+-+. .....+.+.|+.++++ +.+||+++|--. .+ ..||.++++..
T Consensus 170 --~LD~-~~~~~~~~~l~~l~~~-g~tvi~vtHd~~-------------------~~-~~~d~v~~l~~ 214 (224)
T 2pcj_A 170 --NLDS-ANTKRVMDIFLKINEG-GTSIVMVTHERE-------------------LA-ELTHRTLEMKD 214 (224)
T ss_dssp --TCCH-HHHHHHHHHHHHHHHT-TCEEEEECSCHH-------------------HH-TTSSEEEEEET
T ss_pred --CCCH-HHHHHHHHHHHHHHHC-CCEEEEEcCCHH-------------------HH-HhCCEEEEEEC
Confidence 1222 2345677788888777 999999988311 12 46899988854
No 74
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.50 E-value=0.00049 Score=63.98 Aligned_cols=175 Identities=14% Similarity=0.136 Sum_probs=88.5
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC------CCHHHHHHHHHHHhCCCC-c-c--
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME------MSGIQLAMRMLGSVGKLD-Q-H-- 272 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E------~~~~~i~~R~~a~~~~i~-~-~-- 272 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++--. .....-+++... .....+. +.++....-+ . .
T Consensus 39 vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~--~p~~G~I~~~g~~i~~~~~~~~~~~-~~i~~v~Q~~~l~~~~ 115 (263)
T 2olj_A 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLE--DFDEGEIIIDGINLKAKDTNLNKVR-EEVGMVFQRFNLFPHM 115 (263)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS--CCSEEEEEETTEESSSTTCCHHHHH-HHEEEECSSCCCCTTS
T ss_pred EEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCC--CCCCcEEEECCEECCCccccHHHHh-CcEEEEeCCCcCCCCC
Confidence 466664568999999999999999999988766432 111122333221 1112221 2121111100 0 0
Q ss_pred c----cc-----cCCCCcc-hHHHHHHHHHHHhCCCeEEEc-CCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCC
Q psy2891 273 K----LR-----TGRLSSD-DWPRINDSIKKINKSQLYIDE-TPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANS 341 (452)
Q Consensus 273 ~----i~-----~g~l~~~-~~~~~~~a~~~l~~~~l~i~~-~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~ 341 (452)
. +. ...++.. ..+++.++.+.+.-..+ ... ...+|-.+-+...-...--. +|+++++|--..
T Consensus 116 tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGqkQRv~lAraL~~-~p~lllLDEPts----- 188 (263)
T 2olj_A 116 TVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDK-AHAYPDSLSGGQAQRVAIARALAM-EPKIMLFDEPTS----- 188 (263)
T ss_dssp CHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGG-TTSCGGGSCHHHHHHHHHHHHHTT-CCSEEEEESTTT-----
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchH-hcCChhhCCHHHHHHHHHHHHHHC-CCCEEEEeCCcc-----
Confidence 0 00 0011111 12233333333311011 111 12456555443322222223 599999998532
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEec
Q psy2891 342 RGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYR 409 (452)
Q Consensus 342 ~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r 409 (452)
+-+. .....+.+.|+.++++ +.+||+++|-- ..++..||.++++..
T Consensus 189 -~LD~-~~~~~~~~~l~~l~~~-g~tvi~vtHd~-------------------~~~~~~~d~v~~l~~ 234 (263)
T 2olj_A 189 -ALDP-EMVGEVLSVMKQLANE-GMTMVVVTHEM-------------------GFAREVGDRVLFMDG 234 (263)
T ss_dssp -TSCH-HHHHHHHHHHHHHHHT-TCEEEEECSCH-------------------HHHHHHCSEEEEEET
T ss_pred -cCCH-HHHHHHHHHHHHHHhC-CCEEEEEcCCH-------------------HHHHHhCCEEEEEEC
Confidence 1222 2345677788888776 99999998832 135667899998864
No 75
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.50 E-value=0.00066 Score=67.07 Aligned_cols=95 Identities=12% Similarity=0.057 Sum_probs=58.8
Q ss_pred CCcEEEE--EeCCCCChhHHHHHHHHHHHHh-----CCCcEEEEeC--CCCHHHHHHHHHHHhCCCCccccccCCCCcch
Q psy2891 213 PGDLIIV--AGRPSMGKTAFSLNIGEHIAIE-----NKLPVAIFSM--EMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDD 283 (452)
Q Consensus 213 ~G~l~~i--~g~pg~GKT~~~l~ia~~~a~~-----~g~~vl~~s~--E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~ 283 (452)
.+..++| .|+||+|||+++..++...... .+.+++|+++ ..+...+...++... +.+..
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~----------- 116 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQT-GYPIQ----------- 116 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHH-TCCCC-----------
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHh-CCCCC-----------
Confidence 3457888 9999999999999998876432 1567899985 345556666655432 21100
Q ss_pred HHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhcc
Q psy2891 284 WPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 284 ~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~ 339 (452)
....+..++...+..+....+++-+||||.++.+..
T Consensus 117 --------------------~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~ 152 (412)
T 1w5s_A 117 --------------------VRGAPALDILKALVDNLYVENHYLLVILDEFQSMLS 152 (412)
T ss_dssp --------------------CTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHS
T ss_pred --------------------CCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhh
Confidence 012233444444333332223478999999999875
No 76
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.50 E-value=0.0057 Score=57.99 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=34.7
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM 253 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~ 253 (452)
+|+++.|.|++|+||||++..++..... .+.+|++...+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~-~~g~V~l~g~D~ 140 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN-LGKKVMFCAGDT 140 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT-TTCCEEEECCCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh-cCCEEEEEeecC
Confidence 6899999999999999999999988754 577899987765
No 77
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.49 E-value=0.0005 Score=66.62 Aligned_cols=152 Identities=13% Similarity=0.102 Sum_probs=80.9
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCC----------------CcEEEEeC------CCCHHHHH
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENK----------------LPVAIFSM------EMSGIQLA 259 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g----------------~~vl~~s~------E~~~~~i~ 259 (452)
..|+.+.--+.+|+++.|.|++|+|||||+.-++--..-..| ..+.|+.- .++..+..
T Consensus 29 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni 108 (355)
T 1z47_A 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNV 108 (355)
T ss_dssp TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHH
Confidence 356666556899999999999999999998877643210011 12333321 12222222
Q ss_pred HHHHHHhCCCCccccccCCCCcc-hHHHHHHHHHHHhCCCeEEEc-CCCCCHHHHHH--HHHHHHHHcCCccEEEEcCcc
Q psy2891 260 MRMLGSVGKLDQHKLRTGRLSSD-DWPRINDSIKKINKSQLYIDE-TPSLNVIELRA--NSRRLSRQCGKIGVIIIDYLQ 335 (452)
Q Consensus 260 ~R~~a~~~~i~~~~i~~g~l~~~-~~~~~~~a~~~l~~~~l~i~~-~~~~t~~~i~~--~i~~~~~~~~~~~~vvID~l~ 335 (452)
.-.+ ... .++.. ..+++.++.+.+.-..+ .+. ...+|-.+-.. .++.+. . +|+++++|--.
T Consensus 109 ~~~l-~~~----------~~~~~~~~~~v~~~l~~~gL~~~-~~r~~~~LSGGq~QRvalArAL~--~-~P~lLLLDEP~ 173 (355)
T 1z47_A 109 SFGL-REK----------RVPKDEMDARVRELLRFMRLESY-ANRFPHELSGGQQQRVALARALA--P-RPQVLLFDEPF 173 (355)
T ss_dssp HHHH-HHT----------TCCHHHHHHHHHHHHHHTTCGGG-TTSCGGGSCHHHHHHHHHHHHHT--T-CCSEEEEESTT
T ss_pred HHHH-HHc----------CCCHHHHHHHHHHHHHHcCChhH-hcCCcccCCHHHHHHHHHHHHHH--c-CCCEEEEeCCc
Confidence 1100 001 11211 12344444444321111 111 12456554433 333332 2 59999999842
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCC
Q psy2891 336 LMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLN 375 (452)
Q Consensus 336 ~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~ 375 (452)
. +-+. .....+...|+.+.++.+++||+++|--
T Consensus 174 s------~LD~-~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 206 (355)
T 1z47_A 174 A------AIDT-QIRRELRTFVRQVHDEMGVTSVFVTHDQ 206 (355)
T ss_dssp C------CSSH-HHHHHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred c------cCCH-HHHHHHHHHHHHHHHhcCCEEEEECCCH
Confidence 1 1222 2335677788889888999999999853
No 78
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.49 E-value=0.00023 Score=69.08 Aligned_cols=154 Identities=15% Similarity=0.143 Sum_probs=80.9
Q ss_pred ccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCC--------------------CcEEEEeCC------CC
Q psy2891 201 FFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENK--------------------LPVAIFSME------MS 254 (452)
Q Consensus 201 ~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g--------------------~~vl~~s~E------~~ 254 (452)
...|+.+.--+.+|+++.|.||+|+|||||+.-++--..-..| .++.|+.-+ ++
T Consensus 17 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~lt 96 (359)
T 3fvq_A 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLT 96 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSC
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCC
Confidence 3457776556899999999999999999998877653211011 112222111 11
Q ss_pred HHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHH--HHHHHHHHHcCCccEEEEc
Q psy2891 255 GIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELR--ANSRRLSRQCGKIGVIIID 332 (452)
Q Consensus 255 ~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~--~~i~~~~~~~~~~~~vvID 332 (452)
..+ .+. .+... .+.-..+..+++.++.+.+.-..+.-.....+|-.+-. +.++.+. . +|+++++|
T Consensus 97 V~e---ni~---~~l~~----~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~--~-~P~lLLLD 163 (359)
T 3fvq_A 97 VYR---NIA---YGLGN----GKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALA--P-DPELILLD 163 (359)
T ss_dssp HHH---HHH---TTSTT----SSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHT--T-CCSEEEEE
T ss_pred HHH---HHH---HHHHH----cCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHH--c-CCCEEEEe
Confidence 111 110 11100 01112233345555555543111100012245544433 3333332 3 49999999
Q ss_pred CcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecC
Q psy2891 333 YLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQL 374 (452)
Q Consensus 333 ~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql 374 (452)
--.. +-+. .....+...|+.+.++.|++||+++|-
T Consensus 164 EPts------~LD~-~~r~~l~~~l~~~~~~~g~tvi~vTHd 198 (359)
T 3fvq_A 164 EPFS------ALDE-QLRRQIREDMIAALRANGKSAVFVSHD 198 (359)
T ss_dssp STTT------TSCH-HHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CCcc------cCCH-HHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 8421 1222 223455567888888999999999984
No 79
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.48 E-value=0.00052 Score=63.80 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=28.7
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGE 236 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~ 236 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-
T Consensus 21 vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4666645689999999999999999999887664
No 80
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.46 E-value=0.0006 Score=66.30 Aligned_cols=152 Identities=15% Similarity=0.143 Sum_probs=80.6
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCC----------------CcEEEEeCC------CCHHHHH
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENK----------------LPVAIFSME------MSGIQLA 259 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g----------------~~vl~~s~E------~~~~~i~ 259 (452)
..|+.+.--+.+|+++.|.|++|+|||||+.-++--..-..| ..+.|+.-+ ++..+..
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni 96 (362)
T 2it1_A 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNI 96 (362)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHH
T ss_pred EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHH
Confidence 356666456899999999999999999998877643210011 123333211 2222211
Q ss_pred HHHHHHhCCCCccccccCCCCcch-HHHHHHHHHHHhCCCeEEEcCCCCCHHHHHH--HHHHHHHHcCCccEEEEcCcch
Q psy2891 260 MRMLGSVGKLDQHKLRTGRLSSDD-WPRINDSIKKINKSQLYIDETPSLNVIELRA--NSRRLSRQCGKIGVIIIDYLQL 336 (452)
Q Consensus 260 ~R~~a~~~~i~~~~i~~g~l~~~~-~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~--~i~~~~~~~~~~~~vvID~l~~ 336 (452)
.--+ .. ..++..+ .+++.++.+.+.=..+.-.....+|-.+-.. .++.+. . +|+++++|--..
T Consensus 97 ~~~~-~~----------~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~--~-~P~lLLLDEP~s 162 (362)
T 2it1_A 97 AFPL-EL----------RKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALV--K-EPEVLLLDEPLS 162 (362)
T ss_dssp HHHH-HH----------TTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHT--T-CCSEEEEESGGG
T ss_pred HHHH-Hh----------cCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHH--c-CCCEEEEECccc
Confidence 1100 00 0112222 2344555544421111101122456554433 333332 3 499999998532
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecC
Q psy2891 337 MSANSRGENRATEISEISRNLKGLAKEINCPILALSQL 374 (452)
Q Consensus 337 i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql 374 (452)
- -+. .....+...|+.+.++.++++|+++|-
T Consensus 163 ~------LD~-~~r~~l~~~l~~l~~~~g~tvi~vTHd 193 (362)
T 2it1_A 163 N------LDA-LLRLEVRAELKRLQKELGITTVYVTHD 193 (362)
T ss_dssp G------SCH-HHHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred c------CCH-HHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 1 111 223467778888888899999999984
No 81
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.45 E-value=0.00046 Score=63.89 Aligned_cols=35 Identities=23% Similarity=0.237 Sum_probs=29.0
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHH
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGE 236 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~ 236 (452)
..|+.+.--+.+|+++.|.|++|+|||||+.-++-
T Consensus 29 ~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 29 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 35666645689999999999999999999887664
No 82
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.44 E-value=0.00022 Score=66.49 Aligned_cols=176 Identities=14% Similarity=0.184 Sum_probs=87.7
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccccc------
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRT------ 276 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~------ 276 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++--..- ....|.+...+.....+ .+.++....-+...+..
T Consensus 22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p-~~G~I~~~g~~~~~~~~-~~~i~~v~q~~~~~~~~~tv~en 99 (266)
T 2yz2_A 22 ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP-TSGDVLYDGERKKGYEI-RRNIGIAFQYPEDQFFAERVFDE 99 (266)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEETTEECCHHHH-GGGEEEECSSGGGGCCCSSHHHH
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CCcEEEECCEECchHHh-hhhEEEEeccchhhcCCCcHHHH
Confidence 46766556899999999999999999998876643210 11122221111111100 01011100000000000
Q ss_pred ---C--C-CCc-chHHHHHHHHHHHhCC--CeEEEc-CCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCH
Q psy2891 277 ---G--R-LSS-DDWPRINDSIKKINKS--QLYIDE-TPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENR 346 (452)
Q Consensus 277 ---g--~-l~~-~~~~~~~~a~~~l~~~--~l~i~~-~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~ 346 (452)
+ . ++. +..+++.++.+.+.-. .+ ... ...+|-.+-+...-...--. +++++++|--.. +-+.
T Consensus 100 l~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~~~LSgGq~qRv~lAraL~~-~p~lllLDEPts------~LD~ 171 (266)
T 2yz2_A 100 VAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSF-KDRVPFFLSGGEKRRVAIASVIVH-EPDILILDEPLV------GLDR 171 (266)
T ss_dssp HHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHH-TTCCGGGSCHHHHHHHHHHHHHTT-CCSEEEEESTTT------TCCH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCcCCccc-ccCChhhCCHHHHHHHHHHHHHHc-CCCEEEEcCccc------cCCH
Confidence 0 0 111 2233444444443211 10 111 13466555443322222223 499999998532 1222
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEec
Q psy2891 347 ATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYR 409 (452)
Q Consensus 347 ~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r 409 (452)
.....+.+.|+.++++ +.+||+++|--. .+...||.++.+..
T Consensus 172 -~~~~~l~~~l~~l~~~-g~tii~vtHd~~-------------------~~~~~~d~v~~l~~ 213 (266)
T 2yz2_A 172 -EGKTDLLRIVEKWKTL-GKTVILISHDIE-------------------TVINHVDRVVVLEK 213 (266)
T ss_dssp -HHHHHHHHHHHHHHHT-TCEEEEECSCCT-------------------TTGGGCSEEEEEET
T ss_pred -HHHHHHHHHHHHHHHc-CCEEEEEeCCHH-------------------HHHHhCCEEEEEEC
Confidence 3345677788888776 999999988432 23456788887754
No 83
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.42 E-value=0.0061 Score=57.52 Aligned_cols=144 Identities=14% Similarity=0.150 Sum_probs=78.3
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH--HHHhCCCCccccccCC-CCcchHHHHHH
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRM--LGSVGKLDQHKLRTGR-LSSDDWPRIND 289 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~--~a~~~~i~~~~i~~g~-l~~~~~~~~~~ 289 (452)
+|.++.+.|++|+||||++.++|...+. .|.+|+++..+.........+ +....+++.- ..+. .++.+. ...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~-~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~--~~~~~~~p~~l--~~~ 171 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVL--EVMDGESPESI--RRR 171 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH-TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEE--ECCTTCCHHHH--HHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEecCCcccHhHHHHHHHhcccCCeEEE--EcCCCCCHHHH--HHH
Confidence 7889999999999999999999999875 688999999887543332211 2222344332 1111 122222 233
Q ss_pred HHHHH--hCCCeEEEcCCC-CCHH-HHHHHHHHHHHHcCCcc--EEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHH
Q psy2891 290 SIKKI--NKSQLYIDETPS-LNVI-ELRANSRRLSRQCGKIG--VIIIDYLQLMSANSRGENRATEISEISRNLKGLAKE 363 (452)
Q Consensus 290 a~~~l--~~~~l~i~~~~~-~t~~-~i~~~i~~~~~~~~~~~--~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~ 363 (452)
++..+ .+..+.+.|+|+ ...+ .+...+..+..... ++ ++|+|... . .. ..+.++.+...
T Consensus 172 ~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~-~~~~~lv~~~~~---------~-~~----~~~~~~~~~~~ 236 (295)
T 1ls1_A 172 VEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG-PDEVLLVLDAMT---------G-QE----ALSVARAFDEK 236 (295)
T ss_dssp HHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHC-CSEEEEEEEGGG---------T-HH----HHHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcC-CCEEEEEEeCCC---------c-HH----HHHHHHHHhhc
Confidence 44444 355676666663 3221 22333323322221 32 45567531 0 11 12233445556
Q ss_pred hCCcEEEEecCCc
Q psy2891 364 INCPILALSQLNR 376 (452)
Q Consensus 364 ~~i~vi~l~ql~r 376 (452)
.++.-++++++..
T Consensus 237 ~~i~givlnk~d~ 249 (295)
T 1ls1_A 237 VGVTGLVLTKLDG 249 (295)
T ss_dssp TCCCEEEEECGGG
T ss_pred CCCCEEEEECCCC
Confidence 7777777776643
No 84
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.41 E-value=0.0011 Score=63.36 Aligned_cols=44 Identities=16% Similarity=0.098 Sum_probs=38.9
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSG 255 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~ 255 (452)
..+|.++.|.|++|+||||++.++|...+. .|.+|+++..+...
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~-~g~kVllid~D~~r 145 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAE-LGYKVLIAAADTFR 145 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCCSC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCcc
Confidence 567899999999999999999999998875 68999999988743
No 85
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.41 E-value=0.00038 Score=66.37 Aligned_cols=39 Identities=8% Similarity=0.220 Sum_probs=32.9
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
+.-++|.|+||+|||.++..++..+....|.+|+|++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 456899999999999999999998862468999999763
No 86
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.38 E-value=0.0012 Score=64.56 Aligned_cols=152 Identities=14% Similarity=0.143 Sum_probs=80.1
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCC----------------------CcEEEEeC------CC
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENK----------------------LPVAIFSM------EM 253 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g----------------------~~vl~~s~------E~ 253 (452)
..|+.+.--+.+|+++.|.|++|+|||||+.-++--..-..| .++.|+.- .+
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~l 96 (372)
T 1g29_1 17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHM 96 (372)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTS
T ss_pred EEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCC
Confidence 356666446899999999999999999998877643210011 11233211 12
Q ss_pred CHHHHHHHHHHHhCCCCccccccCCCCcch-HHHHHHHHHHHhCCCeEEEcCCCCCHHHHH--HHHHHHHHHcCCccEEE
Q psy2891 254 SGIQLAMRMLGSVGKLDQHKLRTGRLSSDD-WPRINDSIKKINKSQLYIDETPSLNVIELR--ANSRRLSRQCGKIGVII 330 (452)
Q Consensus 254 ~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~-~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~--~~i~~~~~~~~~~~~vv 330 (452)
+..+...-.+. .. .++..+ .+++.++.+.+.=..+.-.....+|-.+-. +.++.+. . +|++++
T Consensus 97 tv~eni~~~~~-~~----------~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~--~-~P~lLL 162 (372)
T 1g29_1 97 TVYDNIAFPLK-LR----------KVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIV--R-KPQVFL 162 (372)
T ss_dssp CHHHHHHHHHH-HT----------TCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHH--T-CCSEEE
T ss_pred CHHHHHHHHHH-Hc----------CCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHh--c-CCCEEE
Confidence 22222111000 00 112221 234445554442111100012245654443 3333333 3 499999
Q ss_pred EcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecC
Q psy2891 331 IDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQL 374 (452)
Q Consensus 331 ID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql 374 (452)
+|--.. +-+. .....+...|+.+.++.++++|+++|-
T Consensus 163 LDEP~s------~LD~-~~r~~l~~~l~~l~~~~g~tvi~vTHd 199 (372)
T 1g29_1 163 MDEPLS------NLDA-KLRVRMRAELKKLQRQLGVTTIYVTHD 199 (372)
T ss_dssp EECTTT------TSCH-HHHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred ECCCCc------cCCH-HHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence 998421 1222 233567778888888899999999984
No 87
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.37 E-value=0.00062 Score=62.40 Aligned_cols=177 Identities=14% Similarity=0.085 Sum_probs=88.1
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC----CCCHHHHHHHHHHHhCC---C----Cc
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM----EMSGIQLAMRMLGSVGK---L----DQ 271 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~----E~~~~~i~~R~~a~~~~---i----~~ 271 (452)
.|+.+.--+++|+++.|.|++|+|||||+.-++--. ......+++.. +.+..+...+-++.... + +.
T Consensus 21 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv 98 (240)
T 1ji0_A 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV--RAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTV 98 (240)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS--CCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBH
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcH
Confidence 466664458999999999999999999988766432 11111222322 12222222221111110 0 00
Q ss_pred c-ccccC---CCCcch-HHHHHHHHHHHh-CCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCC
Q psy2891 272 H-KLRTG---RLSSDD-WPRINDSIKKIN-KSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGEN 345 (452)
Q Consensus 272 ~-~i~~g---~l~~~~-~~~~~~a~~~l~-~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~ 345 (452)
. .+.-+ .....+ .+++.+..+.+. -....-.....+|-.+-+...-...--. +|+++++|--.. +-+
T Consensus 99 ~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~-~p~lllLDEPts------~LD 171 (240)
T 1ji0_A 99 YENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMS-RPKLLMMDEPSL------GLA 171 (240)
T ss_dssp HHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTT-CCSEEEEECTTT------TCC
T ss_pred HHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHc-CCCEEEEcCCcc------cCC
Confidence 0 00000 111122 223333333321 0000001123566555443322222223 499999998432 122
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEec
Q psy2891 346 RATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYR 409 (452)
Q Consensus 346 ~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r 409 (452)
. .....+.+.|+.+++ .+.+||+++|--. .+...||.++++..
T Consensus 172 ~-~~~~~l~~~l~~~~~-~g~tvi~vtHd~~-------------------~~~~~~d~v~~l~~ 214 (240)
T 1ji0_A 172 P-ILVSEVFEVIQKINQ-EGTTILLVEQNAL-------------------GALKVAHYGYVLET 214 (240)
T ss_dssp H-HHHHHHHHHHHHHHH-TTCCEEEEESCHH-------------------HHHHHCSEEEEEET
T ss_pred H-HHHHHHHHHHHHHHH-CCCEEEEEecCHH-------------------HHHHhCCEEEEEEC
Confidence 2 234567777888765 5899999988321 25667899998864
No 88
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.36 E-value=0.0014 Score=62.78 Aligned_cols=39 Identities=21% Similarity=0.163 Sum_probs=32.8
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
.+..++|.|+||+|||+++..++..... .+.+++|++++
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~-~~~~~~~i~~~ 74 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKK-RGYRVIYSSAD 74 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHH-TTCCEEEEEHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHH-CCCEEEEEEHH
Confidence 3456899999999999999999988754 57899999864
No 89
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.35 E-value=0.00029 Score=61.05 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=28.1
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHh------CCCcEEEEeC
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIE------NKLPVAIFSM 251 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~------~g~~vl~~s~ 251 (452)
..++|.|+||+|||+++..++...... .+.+++++++
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDL 86 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeH
Confidence 357999999999999999998887431 2566666643
No 90
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=97.31 E-value=0.00031 Score=66.68 Aligned_cols=40 Identities=23% Similarity=0.427 Sum_probs=33.4
Q ss_pred cEEEEEe-CCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCH
Q psy2891 215 DLIIVAG-RPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSG 255 (452)
Q Consensus 215 ~l~~i~g-~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~ 255 (452)
.++.|++ .+|+|||+++.++|..+|. .|.+|+.+.+++..
T Consensus 105 kvI~vts~kgG~GKTtva~nLA~~lA~-~G~rVLLID~D~r~ 145 (299)
T 3cio_A 105 NILMITGATPDSGKTFVSSTLAAVIAQ-SDQKVLFIDADLRR 145 (299)
T ss_dssp CEEEEEESSSSSCHHHHHHHHHHHHHH-TTCCEEEEECCTTT
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHh-CCCcEEEEECCCCC
Confidence 3555555 6999999999999999985 79999999999853
No 91
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.31 E-value=0.00038 Score=65.33 Aligned_cols=34 Identities=29% Similarity=0.321 Sum_probs=28.3
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGE 236 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~ 236 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-
T Consensus 36 vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp EEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4666644589999999999999999999886664
No 92
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=97.30 E-value=0.0021 Score=68.56 Aligned_cols=139 Identities=14% Similarity=0.127 Sum_probs=79.6
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC-CHHHHHHHHHHHh--CCCCccccccCCCCcchHHHH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM-SGIQLAMRMLGSV--GKLDQHKLRTGRLSSDDWPRI 287 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~-~~~~i~~R~~a~~--~~i~~~~i~~g~l~~~~~~~~ 287 (452)
+..|.-++|+|++|+|||+.+...+.......|.+++|+.--- -..++..++ ... .|+....+ .|.....+-
T Consensus 43 ~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~-~~~~~~g~~v~~~-~G~~~~~~~--- 117 (715)
T 2va8_A 43 LLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTF-KDWELIGFKVAMT-SGDYDTDDA--- 117 (715)
T ss_dssp TTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHH-GGGGGGTCCEEEC-CSCSSSCCG---
T ss_pred hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHH-HHhhcCCCEEEEE-eCCCCCchh---
Confidence 5668899999999999999998888776554678899986432 233444444 111 23433322 233222110
Q ss_pred HHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCc
Q psy2891 288 NDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCP 367 (452)
Q Consensus 288 ~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~ 367 (452)
++.+..+.+. |++.+...++.-.....++++||||-.+.+... .+...+..+...++ ++.
T Consensus 118 -----~~~~~~Iiv~-----Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~----~~~~~l~~i~~~~~------~~~ 177 (715)
T 2va8_A 118 -----WLKNYDIIIT-----TYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDP----ERGPVVESVTIRAK------RRN 177 (715)
T ss_dssp -----GGGGCSEEEE-----CHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCT----TTHHHHHHHHHHHH------TSE
T ss_pred -----hcCCCCEEEE-----cHHHHHHHHhCChhHhhccCEEEEechhhcCCc----ccchHHHHHHHhcc------cCc
Confidence 1234456664 455665544431110124899999999997632 23333444444443 666
Q ss_pred EEEEecC
Q psy2891 368 ILALSQL 374 (452)
Q Consensus 368 vi~l~ql 374 (452)
+|+++-.
T Consensus 178 ii~lSAT 184 (715)
T 2va8_A 178 LLALSAT 184 (715)
T ss_dssp EEEEESC
T ss_pred EEEEcCC
Confidence 6666643
No 93
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.29 E-value=0.00043 Score=69.08 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=34.1
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM 253 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~ 253 (452)
.+++|+|+||+||||++..+|..++. .|++|++++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~-~G~kVllv~~D~ 137 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQK-RGLKPALIAADT 137 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHH-HHCCEEEECCSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEeccc
Confidence 47889999999999999999999875 589999999874
No 94
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.28 E-value=0.00058 Score=66.33 Aligned_cols=151 Identities=17% Similarity=0.184 Sum_probs=79.2
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCC----------------CcEEEEeCC------CCHHHHH
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENK----------------LPVAIFSME------MSGIQLA 259 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g----------------~~vl~~s~E------~~~~~i~ 259 (452)
..|+.+.--+.+|+++.|.|++|+||||++.-++--..-..| .++.|+.-+ ++..+
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e-- 94 (359)
T 2yyz_A 17 KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFE-- 94 (359)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHH--
T ss_pred EEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHH--
Confidence 356666556899999999999999999998877643210011 123333211 11111
Q ss_pred HHHHHHhCCCCccccccCCCCcc-hHHHHHHHHHHHhCCCeEEEc-CCCCCHHHHHH--HHHHHHHHcCCccEEEEcCcc
Q psy2891 260 MRMLGSVGKLDQHKLRTGRLSSD-DWPRINDSIKKINKSQLYIDE-TPSLNVIELRA--NSRRLSRQCGKIGVIIIDYLQ 335 (452)
Q Consensus 260 ~R~~a~~~~i~~~~i~~g~l~~~-~~~~~~~a~~~l~~~~l~i~~-~~~~t~~~i~~--~i~~~~~~~~~~~~vvID~l~ 335 (452)
.+ +. +.. ....+.. ..+++.++.+.+.=..+ ... ...+|-.+-.. .++.+. . +|+++++|--.
T Consensus 95 -ni-~~--~~~-----~~~~~~~~~~~~v~~~l~~~~L~~~-~~r~~~~LSgGq~QRvalArAL~--~-~P~lLLLDEP~ 161 (359)
T 2yyz_A 95 -NI-AF--PLR-----ARRISKDEVEKRVVEIARKLLIDNL-LDRKPTQLSGGQQQRVALARALV--K-QPKVLLFDEPL 161 (359)
T ss_dssp -HH-HG--GGS-----SSCSHHHHTTHHHHHHHHHTTCGGG-TTSCGGGSCHHHHHHHHHHHHHT--T-CCSEEEEESTT
T ss_pred -HH-HH--HHH-----hcCCCHHHHHHHHHHHHHHcCCchH-hcCChhhCCHHHHHHHHHHHHHH--c-CCCEEEEECCc
Confidence 11 00 000 0011111 12344444444421111 111 12456554433 333332 3 49999999842
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecC
Q psy2891 336 LMSANSRGENRATEISEISRNLKGLAKEINCPILALSQL 374 (452)
Q Consensus 336 ~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql 374 (452)
. +-+. .....+...|+.+.++.++++|+++|-
T Consensus 162 s------~LD~-~~r~~l~~~l~~l~~~~g~tvi~vTHd 193 (359)
T 2yyz_A 162 S------NLDA-NLRMIMRAEIKHLQQELGITSVYVTHD 193 (359)
T ss_dssp T------TSCH-HHHHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred c------cCCH-HHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 1 1222 233567778888888899999999984
No 95
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=97.27 E-value=0.00033 Score=65.48 Aligned_cols=41 Identities=20% Similarity=0.274 Sum_probs=34.1
Q ss_pred cEEEEE-eCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHH
Q psy2891 215 DLIIVA-GRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGI 256 (452)
Q Consensus 215 ~l~~i~-g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~ 256 (452)
.++.|+ +.+|+|||+++.++|..+|. .|.+|+++.+++...
T Consensus 83 kvI~vts~kgG~GKTt~a~nLA~~lA~-~G~rVLLID~D~~~~ 124 (271)
T 3bfv_A 83 QSIVITSEAPGAGKSTIAANLAVAYAQ-AGYKTLIVDGDMRKP 124 (271)
T ss_dssp CEEEEECSSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCSSSC
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHh-CCCeEEEEeCCCCCc
Confidence 355555 56999999999999999985 799999999997543
No 96
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.25 E-value=0.0014 Score=61.28 Aligned_cols=38 Identities=21% Similarity=0.362 Sum_probs=29.9
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
|+.++.-++|.|+||+|||+++..++.. .+.+++++++
T Consensus 47 ~~~~~~~~ll~G~~GtGKT~la~~la~~----~~~~~~~v~~ 84 (285)
T 3h4m_A 47 GIEPPKGILLYGPPGTGKTLLAKAVATE----TNATFIRVVG 84 (285)
T ss_dssp CCCCCSEEEEESSSSSSHHHHHHHHHHH----TTCEEEEEEG
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHH----hCCCEEEEeh
Confidence 4566667999999999999999988754 3567777764
No 97
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.24 E-value=0.0017 Score=63.08 Aligned_cols=59 Identities=24% Similarity=0.442 Sum_probs=42.6
Q ss_pred CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEE------eCCCCHHHHHHHHHHHhCCC
Q psy2891 209 SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIF------SMEMSGIQLAMRMLGSVGKL 269 (452)
Q Consensus 209 gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~------s~E~~~~~i~~R~~a~~~~i 269 (452)
.|..+|..++|.|+||+|||+++..++..+. ...+...+ +.+++..+...+......+.
T Consensus 65 ~~~~~~~~vLl~GppGtGKT~la~~la~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (368)
T 3uk6_A 65 EGKIAGRAVLIAGQPGTGKTAIAMGMAQALG--PDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGV 129 (368)
T ss_dssp TTCCTTCEEEEEESTTSSHHHHHHHHHHHHC--SSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEE
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHHhc--ccCCcccccchhhhhcccchhHHHHHHHHHHHHH
Confidence 3455677899999999999999999998763 23344433 46788888777776554443
No 98
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.22 E-value=0.0019 Score=56.85 Aligned_cols=147 Identities=15% Similarity=0.162 Sum_probs=82.1
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC-----HHHHHHHHHHHhCCCCccccccCCC-CcchHH
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS-----GIQLAMRMLGSVGKLDQHKLRTGRL-SSDDWP 285 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~-----~~~i~~R~~a~~~~i~~~~i~~g~l-~~~~~~ 285 (452)
.+| +++|.+.+|.|||+.|+-++..++ .+|.+|+++.+--. +..+..++ ++.......|.. ...+.+
T Consensus 27 ~~g-~i~v~tG~GkGKTTaA~GlalRA~-g~G~rV~~vQF~Kg~~~~gE~~~l~~L-----~v~~~~~g~gf~~~~~~~~ 99 (196)
T 1g5t_A 27 ERG-IIIVFTGNGKGKTTAAFGTAARAV-GHGKNVGVVQFIKGTWPNGERNLLEPH-----GVEFQVMATGFTWETQNRE 99 (196)
T ss_dssp CCC-CEEEEESSSSCHHHHHHHHHHHHH-HTTCCEEEEESSCCSSCCHHHHHHGGG-----TCEEEECCTTCCCCGGGHH
T ss_pred cCc-eEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEEeeCCCCCccHHHHHHhC-----CcEEEEcccccccCCCCcH
Confidence 345 778888889999999999999997 58999999965432 23344333 344443333221 111111
Q ss_pred HHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhC
Q psy2891 286 RINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEIN 365 (452)
Q Consensus 286 ~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~ 365 (452)
.-..+ ...-...+++.... +++|+||+|-+.....-+ .-. ..++...|. .+--+
T Consensus 100 ~~~~~------------------a~~~l~~a~~~l~~-~~yDlvILDEi~~al~~g-~l~----~~ev~~~l~--~Rp~~ 153 (196)
T 1g5t_A 100 ADTAA------------------CMAVWQHGKRMLAD-PLLDMVVLDELTYMVAYD-YLP----LEEVISALN--ARPGH 153 (196)
T ss_dssp HHHHH------------------HHHHHHHHHHHTTC-TTCSEEEEETHHHHHHTT-SSC----HHHHHHHHH--TSCTT
T ss_pred HHHHH------------------HHHHHHHHHHHHhc-CCCCEEEEeCCCccccCC-CCC----HHHHHHHHH--hCcCC
Confidence 10000 01112222222222 369999999998754322 111 223444443 23346
Q ss_pred CcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEec
Q psy2891 366 CPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYR 409 (452)
Q Consensus 366 i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r 409 (452)
..||++.... ...+-..||.|--+..
T Consensus 154 ~~vIlTGr~a------------------p~~l~e~AD~VTem~~ 179 (196)
T 1g5t_A 154 QTVIITGRGC------------------HRDILDLADTVSELRP 179 (196)
T ss_dssp CEEEEECSSC------------------CHHHHHHCSEEEECCC
T ss_pred CEEEEECCCC------------------cHHHHHhCcceeeecc
Confidence 7888876322 2356778999977754
No 99
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.22 E-value=0.0007 Score=65.48 Aligned_cols=153 Identities=16% Similarity=0.178 Sum_probs=78.3
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC----CCHHHHHHHHHHHhCCCCccccccC-
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME----MSGIQLAMRMLGSVGKLDQHKLRTG- 277 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E----~~~~~i~~R~~a~~~~i~~~~i~~g- 277 (452)
.|+.+.--+.+|+++.|.|++|+||||++.-++--.. ....-+++..+ .++. .|-++.... +. .+...
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~~---~r~ig~v~Q-~~-~l~~~l 87 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPE---KHDIAFVYQ-NY-SLFPHM 87 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTTSCHH---HHTCEEECT-TC-CCCTTS
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECCCCchh---hCcEEEEec-Cc-ccCCCC
Confidence 4666645689999999999999999999887764321 11112222211 1111 121111110 00 00000
Q ss_pred -------------CCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHH--HHHHHHHcCCccEEEEcCcchhccCCC
Q psy2891 278 -------------RLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRAN--SRRLSRQCGKIGVIIIDYLQLMSANSR 342 (452)
Q Consensus 278 -------------~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~--i~~~~~~~~~~~~vvID~l~~i~~~~~ 342 (452)
.... + +++.++.+.+.-..+.-.....+|-.+-+.. ++.+. . +|+++++|--..
T Consensus 88 tv~enl~~~~~~~~~~~-~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~--~-~P~lLLLDEP~s------ 156 (348)
T 3d31_A 88 NVKKNLEFGMRMKKIKD-P-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALV--T-NPKILLLDEPLS------ 156 (348)
T ss_dssp CHHHHHHHHHHHHCCCC-H-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTT--S-CCSEEEEESSST------
T ss_pred CHHHHHHHHHHHcCCCH-H-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHH--c-CCCEEEEECccc------
Confidence 0111 1 3444444443211110001124565544332 32222 3 599999998421
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhCCcEEEEecC
Q psy2891 343 GENRATEISEISRNLKGLAKEINCPILALSQL 374 (452)
Q Consensus 343 ~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql 374 (452)
+-+. .....+...|+.+.++.++++|+++|-
T Consensus 157 ~LD~-~~~~~l~~~l~~l~~~~g~tii~vTHd 187 (348)
T 3d31_A 157 ALDP-RTQENAREMLSVLHKKNKLTVLHITHD 187 (348)
T ss_dssp TSCH-HHHHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred cCCH-HHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 1222 233567788888888899999999984
No 100
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.21 E-value=0.0025 Score=62.45 Aligned_cols=38 Identities=24% Similarity=0.339 Sum_probs=28.9
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
|+++..=+++.||||+|||.+|..+|... +.+.+.+++
T Consensus 178 gi~~prGvLL~GPPGTGKTllAkAiA~e~----~~~f~~v~~ 215 (405)
T 4b4t_J 178 GIAQPKGVILYGPPGTGKTLLARAVAHHT----DCKFIRVSG 215 (405)
T ss_dssp TCCCCCCEEEESCSSSSHHHHHHHHHHHH----TCEEEEEEG
T ss_pred CCCCCCceEEeCCCCCCHHHHHHHHHHhh----CCCceEEEh
Confidence 45444449999999999999999888764 566666654
No 101
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.21 E-value=0.0011 Score=62.74 Aligned_cols=37 Identities=22% Similarity=0.403 Sum_probs=29.6
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEe
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFS 250 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s 250 (452)
|+.++.-++|.|+||+|||+++..++... +.+.++++
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~----~~~~i~v~ 81 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC----QANFISIK 81 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT----TCEEEEEC
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh----CCCEEEEE
Confidence 57788889999999999999999888643 45566554
No 102
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.18 E-value=0.0068 Score=61.45 Aligned_cols=117 Identities=10% Similarity=0.054 Sum_probs=63.4
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHH--HHHHHhCCCCccccccCCCCcchHHHHHHHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAM--RMLGSVGKLDQHKLRTGRLSSDDWPRINDSI 291 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~--R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~ 291 (452)
...++|+|+||+||||++..++..++. .|.+|++++++.-...... +..+...+++......+ .++.+ .+.+++
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~-~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~-~dp~~--i~~~al 176 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQR-KGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTE-MDPVI--IASEGV 176 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCC-SCHHH--HHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCC-CCHHH--HHHHHH
Confidence 457889999999999999999999874 6899999998753221111 11222234543221111 11111 223444
Q ss_pred HHH--hCCCeEEEcCCCCC-H-HHHHHHHHHHHHHcC-CccEEEEcCc
Q psy2891 292 KKI--NKSQLYIDETPSLN-V-IELRANSRRLSRQCG-KIGVIIIDYL 334 (452)
Q Consensus 292 ~~l--~~~~l~i~~~~~~t-~-~~i~~~i~~~~~~~~-~~~~vvID~l 334 (452)
..+ .+..+.|.|+++.. . ..+...+..+..... ..-++|||..
T Consensus 177 ~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~ 224 (504)
T 2j37_W 177 EKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDAS 224 (504)
T ss_dssp HHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETT
T ss_pred HHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecc
Confidence 444 44567777765443 1 233333333322112 2336688874
No 103
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.18 E-value=0.0041 Score=59.50 Aligned_cols=41 Identities=20% Similarity=0.237 Sum_probs=31.3
Q ss_pred CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 209 SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 209 gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
++..+..-++|.|+||+|||++|..++... .+.++++++..
T Consensus 40 ~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~~~~~i~~~ 80 (322)
T 1xwi_A 40 GKRTPWRGILLFGPPGTGKSYLAKAVATEA---NNSTFFSISSS 80 (322)
T ss_dssp TTCCCCSEEEEESSSSSCHHHHHHHHHHHT---TSCEEEEEECC
T ss_pred CCCCCCceEEEECCCCccHHHHHHHHHHHc---CCCcEEEEEhH
Confidence 345566679999999999999999888764 25667776664
No 104
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.17 E-value=0.0013 Score=65.90 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=32.6
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhC-CCcEEEEeCCC
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIEN-KLPVAIFSMEM 253 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~-g~~vl~~s~E~ 253 (452)
+.-++|.|+||+|||+++..++....... +.+++|++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~ 170 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 45789999999999999999988775432 78899988753
No 105
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.16 E-value=0.0012 Score=59.42 Aligned_cols=151 Identities=15% Similarity=0.164 Sum_probs=77.8
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhC------C-------CcEEEEeCC------CCHHHHHHHH
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIEN------K-------LPVAIFSME------MSGIQLAMRM 262 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~------g-------~~vl~~s~E------~~~~~i~~R~ 262 (452)
+.|+.+.--+.+|+++.|.|++|+|||||+.-++--.--.. | ..+.|+.-+ ++..+...-.
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~ 102 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAV 102 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHH
Confidence 45666644589999999999999999999887654321001 1 123444222 1222222111
Q ss_pred HHHhCCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEc-CCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCC
Q psy2891 263 LGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDE-TPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANS 341 (452)
Q Consensus 263 ~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~-~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~ 341 (452)
. ... + +. .+.+++.++++.+.-... .. ...+|-.+-+...-...--. +++++++|--..--..
T Consensus 103 ~-~~~---------~-~~-~~~~~~~~~l~~~gl~~~--~~~~~~LSgGqkqrv~laraL~~-~p~lllLDEPts~LD~- 166 (214)
T 1sgw_A 103 A-SLY---------G-VK-VNKNEIMDALESVEVLDL--KKKLGELSQGTIRRVQLASTLLV-NAEIYVLDDPVVAIDE- 166 (214)
T ss_dssp H-HHT---------T-CC-CCHHHHHHHHHHTTCCCT--TSBGGGSCHHHHHHHHHHHHTTS-CCSEEEEESTTTTSCT-
T ss_pred H-Hhc---------C-Cc-hHHHHHHHHHHHcCCCcC--CCChhhCCHHHHHHHHHHHHHHh-CCCEEEEECCCcCCCH-
Confidence 0 000 1 01 113344555555421122 21 22466555443322222223 5999999986432221
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCC
Q psy2891 342 RGENRATEISEISRNLKGLAKEINCPILALSQLN 375 (452)
Q Consensus 342 ~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~ 375 (452)
.. ...+.+.|+.++++ +.+||+++|--
T Consensus 167 ---~~---~~~l~~~l~~~~~~-g~tiiivtHd~ 193 (214)
T 1sgw_A 167 ---DS---KHKVLKSILEILKE-KGIVIISSREE 193 (214)
T ss_dssp ---TT---HHHHHHHHHHHHHH-HSEEEEEESSC
T ss_pred ---HH---HHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence 12 23555666776655 78888888754
No 106
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.0031 Score=62.74 Aligned_cols=38 Identities=21% Similarity=0.393 Sum_probs=30.0
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
|+.+..=+++.||||+|||.+|..+|... |.+.+++++
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~----~~~~~~v~~ 248 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATI----GANFIFSPA 248 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHH----TCEEEEEEG
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHh----CCCEEEEeh
Confidence 56555569999999999999999988765 566776654
No 107
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.15 E-value=0.0027 Score=63.03 Aligned_cols=38 Identities=21% Similarity=0.359 Sum_probs=29.5
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
|+.+..=+++.||||+|||.+|..+|... |.+++.+++
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~----~~~~~~v~~ 239 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANST----KAAFIRVNG 239 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHH----TCEEEEEEG
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh----CCCeEEEec
Confidence 45554559999999999999999988764 566776654
No 108
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.14 E-value=0.0033 Score=60.28 Aligned_cols=129 Identities=14% Similarity=0.148 Sum_probs=70.8
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC--------CHHHHHHHHHHHhCCCCccccccCCCCcchHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM--------SGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWP 285 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~--------~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~ 285 (452)
|.+++|.|++|+|||+++.+++... + ++|+++.. +...+...+....... .
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---------------~ 89 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNER----P--GILIDCRELYAERGHITREELIKELQSTISPF---------------Q 89 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHS----S--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSH---------------H
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHc----C--cEEEEeecccccccCCCHHHHHHHHHHHHHHH---------------H
Confidence 3699999999999999999987542 2 88988753 3344444443321110 0
Q ss_pred HHHHHHHHHhCCCeEEE----cCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHH
Q psy2891 286 RINDSIKKINKSQLYID----ETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLA 361 (452)
Q Consensus 286 ~~~~a~~~l~~~~l~i~----~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA 361 (452)
++.+... + .+.+. +....++.++...+..+....+ +-+||||.+|.+........ ..+...|+.+.
T Consensus 90 ~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~vlvlDe~~~~~~~~~~~~-----~~~~~~L~~~~ 159 (350)
T 2qen_A 90 KFQSKFK-I---SLNLKFLTLEPRKLSLREVFRELNDLGEELG-EFIVAFDEAQYLRFYGSRGG-----KELLALFAYAY 159 (350)
T ss_dssp HHHHHHT-C---CCCCGGGTSCGGGCCHHHHHHHHHHHHHHHS-CEEEEEETGGGGGGBTTTTT-----HHHHHHHHHHH
T ss_pred hHhhhce-e---EEEecceeeccccchHHHHHHHHHHHHhccC-CEEEEEeCHHHHhccCccch-----hhHHHHHHHHH
Confidence 1111100 0 00000 0002346666666666555444 78999999999875110011 13344555555
Q ss_pred HH-hCCcEEEEec
Q psy2891 362 KE-INCPILALSQ 373 (452)
Q Consensus 362 ~~-~~i~vi~l~q 373 (452)
.. .++.+|+++.
T Consensus 160 ~~~~~~~~il~g~ 172 (350)
T 2qen_A 160 DSLPNLKIILTGS 172 (350)
T ss_dssp HHCTTEEEEEEES
T ss_pred HhcCCeEEEEECC
Confidence 44 3777777653
No 109
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.14 E-value=0.00061 Score=62.77 Aligned_cols=174 Identities=13% Similarity=0.133 Sum_probs=89.2
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC----CCHHHHHHHHHHHhCCCC-------
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME----MSGIQLAMRMLGSVGKLD------- 270 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E----~~~~~i~~R~~a~~~~i~------- 270 (452)
..|+.+.--+.+|+++.|.|++|+|||||+.-++--.- .. .-+++... .+..++..+ ++....-+
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~~~~~~~~~~~-i~~v~q~~~~~~~~t 89 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLEAWSATKLALH-RAYLSQQQTPPFATP 89 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGGGSCHHHHHHH-EEEECSCCCCCTTCB
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECCcCCHHHHhce-EEEECCCCccCCCCc
Confidence 45666645689999999999999999999887664331 11 22333221 233332221 22111100
Q ss_pred ccc-cccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHH--HHHHHHHHHcCCcc-------EEEEcCcchhccC
Q psy2891 271 QHK-LRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELR--ANSRRLSRQCGKIG-------VIIIDYLQLMSAN 340 (452)
Q Consensus 271 ~~~-i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~--~~i~~~~~~~~~~~-------~vvID~l~~i~~~ 340 (452)
... +.-+.......+++.++.+.+.-..+.-.....+|-.+-+ ..++.+.. +++ ++++|--..
T Consensus 90 v~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~---~p~~~~~~~~lllLDEPts---- 162 (249)
T 2qi9_C 90 VWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ---ITPQANPAGQLLLLDEPMN---- 162 (249)
T ss_dssp HHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHH---HCTTTCTTCCEEEESSTTT----
T ss_pred HHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHc---CCCcCCCCCeEEEEECCcc----
Confidence 000 0001100001233444444432111100012245554443 33444443 377 999998432
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEec
Q psy2891 341 SRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYR 409 (452)
Q Consensus 341 ~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r 409 (452)
+-+. .....+.+.|+.++++ +.+||+++|--. .++..||.++.|..
T Consensus 163 --~LD~-~~~~~l~~~l~~l~~~-g~tviivtHd~~-------------------~~~~~~d~v~~l~~ 208 (249)
T 2qi9_C 163 --SLDV-AQQSALDKILSALSQQ-GLAIVMSSHDLN-------------------HTLRHAHRAWLLKG 208 (249)
T ss_dssp --TCCH-HHHHHHHHHHHHHHHT-TCEEEEECSCHH-------------------HHHHHCSEEEEEET
T ss_pred --cCCH-HHHHHHHHHHHHHHhC-CCEEEEEeCCHH-------------------HHHHhCCEEEEEEC
Confidence 2222 2345677788888766 899999988321 24567888888864
No 110
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.14 E-value=0.0046 Score=58.90 Aligned_cols=55 Identities=7% Similarity=0.029 Sum_probs=38.0
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhC------CCcEEEEeCC--CCHHHHHHHHHHHhCC
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIEN------KLPVAIFSME--MSGIQLAMRMLGSVGK 268 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~------g~~vl~~s~E--~~~~~i~~R~~a~~~~ 268 (452)
+.-++|.|+||+|||+++..++..+.... +..++|+++- .++..+...++..+.|
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g 107 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISK 107 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcC
Confidence 44679999999999999999998874321 2457777754 3556677777665544
No 111
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.13 E-value=0.0014 Score=62.02 Aligned_cols=38 Identities=11% Similarity=0.074 Sum_probs=30.3
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
|.++...+++.|+||+|||+++..+|... |.+++++++
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l----~~~~i~v~~ 69 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKM----GINPIMMSA 69 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHH----TCCCEEEEH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh----CCCEEEEeH
Confidence 44444568899999999999999998765 577888875
No 112
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.0022 Score=63.71 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=29.7
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
|+++..=+++.||||+|||.+|..+|... |.+.+.+++
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e~----~~~f~~v~~ 248 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQT----NATFLKLAA 248 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHH----TCEEEEEEG
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHHh----CCCEEEEeh
Confidence 55555569999999999999999888764 566776664
No 113
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.07 E-value=0.00036 Score=60.71 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=31.2
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC-HHHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS-GIQLAMRML 263 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~-~~~i~~R~~ 263 (452)
+++|.|++|+|||+||.+++.. |.+++|+..+.. ..++..|+.
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-----~~~~~yiaT~~~~d~e~~~rI~ 44 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-----APQVLYIATSQILDDEMAARIQ 44 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-----CSSEEEEECCCC------CHHH
T ss_pred CEEEECCCCCcHHHHHHHHHhc-----CCCeEEEecCCCCCHHHHHHHH
Confidence 4789999999999999998743 678999999775 444555543
No 114
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.04 E-value=0.0044 Score=64.51 Aligned_cols=157 Identities=17% Similarity=0.145 Sum_probs=87.2
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCC-----CcEEEEeCC------CCHHHHHHHHHHHhCCCCccccccCCC
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENK-----LPVAIFSME------MSGIQLAMRMLGSVGKLDQHKLRTGRL 279 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g-----~~vl~~s~E------~~~~~i~~R~~a~~~~i~~~~i~~g~l 279 (452)
+.+|+++.|.|++|+|||||+.-++--..-..| .++.|+.-+ ++..+........ + .
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~--~-----~----- 446 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSS--K-----L----- 446 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHH--H-----H-----
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhcc--C-----C-----
Confidence 578999999999999999999877753211112 346666433 3333333221000 0 0
Q ss_pred CcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHH
Q psy2891 280 SSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKG 359 (452)
Q Consensus 280 ~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~ 359 (452)
.+..++.++++.+.-..+.-.....+|-.+-....-...-.. +++++++|--.. +-+. .....+.+.|+.
T Consensus 447 --~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~-~p~lLlLDEPt~------~LD~-~~~~~l~~~l~~ 516 (607)
T 3bk7_A 447 --NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLR-DADIYLLDEPSA------YLDV-EQRLAVSRAIRH 516 (607)
T ss_dssp --HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTS-CCSEEEEECTTT------TCCH-HHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHh-CCCEEEEeCCcc------CCCH-HHHHHHHHHHHH
Confidence 011223333333321111101123466555544322222223 499999998432 2222 234577888888
Q ss_pred HHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEe
Q psy2891 360 LAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIY 408 (452)
Q Consensus 360 lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~ 408 (452)
++++.+.+||+++|--. .+...||.++.|.
T Consensus 517 l~~~~g~tvi~vsHd~~-------------------~~~~~adrv~vl~ 546 (607)
T 3bk7_A 517 LMEKNEKTALVVEHDVL-------------------MIDYVSDRLIVFE 546 (607)
T ss_dssp HHHHTTCEEEEECSCHH-------------------HHHHHCSEEEEEE
T ss_pred HHHhCCCEEEEEeCCHH-------------------HHHHhCCEEEEEc
Confidence 88888999999988321 2556788888886
No 115
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.0045 Score=61.04 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=29.4
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
|+++..=+++.||||+|||.+|..+|... +.+.+.++.
T Consensus 212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e~----~~~fi~v~~ 249 (437)
T 4b4t_I 212 GIKPPKGVILYGAPGTGKTLLAKAVANQT----SATFLRIVG 249 (437)
T ss_dssp TCCCCSEEEEESSTTTTHHHHHHHHHHHH----TCEEEEEES
T ss_pred CCCCCCCCceECCCCchHHHHHHHHHHHh----CCCEEEEEH
Confidence 55554559999999999999999888765 456666654
No 116
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=97.03 E-value=0.0035 Score=57.05 Aligned_cols=39 Identities=13% Similarity=0.222 Sum_probs=33.0
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS 254 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~ 254 (452)
+.+..+..|+|||+++.++|..++...|.+|+++.++..
T Consensus 7 I~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 7 FGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred EEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 456667899999999999999998533999999999865
No 117
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.01 E-value=0.0012 Score=60.93 Aligned_cols=39 Identities=18% Similarity=0.327 Sum_probs=29.8
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
|..+..-++|.|+||+|||+++..++... +.+++++++.
T Consensus 35 g~~~~~~vll~G~~GtGKT~la~~la~~~----~~~~~~~~~~ 73 (262)
T 2qz4_A 35 GAKVPKGALLLGPPGCGKTLLAKAVATEA----QVPFLAMAGA 73 (262)
T ss_dssp -CCCCCEEEEESCTTSSHHHHHHHHHHHH----TCCEEEEETT
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh----CCCEEEechH
Confidence 34445568999999999999999888754 4677777764
No 118
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.00 E-value=0.00089 Score=61.33 Aligned_cols=174 Identities=14% Similarity=0.124 Sum_probs=86.8
Q ss_pred cccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC-CCHHHHHHHHHHHhCCCCccc-ccc-----
Q psy2891 204 LDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME-MSGIQLAMRMLGSVGKLDQHK-LRT----- 276 (452)
Q Consensus 204 LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E-~~~~~i~~R~~a~~~~i~~~~-i~~----- 276 (452)
|+.+.--+++ +++.|.|++|+|||||+.-++--.. ....-+++... .....-..+-++. +.... +..
T Consensus 15 l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~i~~---v~q~~~l~~~ltv~ 88 (240)
T 2onk_A 15 RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGF---VPQDYALFPHLSVY 88 (240)
T ss_dssp EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBC---CCSSCCCCTTSCHH
T ss_pred EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCchhhCcEEE---EcCCCccCCCCcHH
Confidence 6666445889 9999999999999999987764321 11112233221 1100000010110 11000 000
Q ss_pred -----C-CCC--cchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHH
Q psy2891 277 -----G-RLS--SDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRAT 348 (452)
Q Consensus 277 -----g-~l~--~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~ 348 (452)
+ ... ..+.+++.++.+.+.-..+.-.....+|-.+-+...-...--. +|+++++|--.. +-+. .
T Consensus 89 enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~-~p~lllLDEPts------~LD~-~ 160 (240)
T 2onk_A 89 RNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVI-QPRLLLLDEPLS------AVDL-K 160 (240)
T ss_dssp HHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTT-CCSSBEEESTTS------SCCH-H
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHc-CCCEEEEeCCcc------cCCH-H
Confidence 0 000 0112233333332210011000122466555443322222223 499999998432 1222 3
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecC
Q psy2891 349 EISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRD 410 (452)
Q Consensus 349 ~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~ 410 (452)
....+.+.|+.++++.+.+||+++|--. .+...||.++++...
T Consensus 161 ~~~~~~~~l~~l~~~~g~tvi~vtHd~~-------------------~~~~~~d~i~~l~~G 203 (240)
T 2onk_A 161 TKGVLMEELRFVQREFDVPILHVTHDLI-------------------EAAMLADEVAVMLNG 203 (240)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEESCHH-------------------HHHHHCSEEEEEETT
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-------------------HHHHhCCEEEEEECC
Confidence 3456778888888888999999988321 256678999988643
No 119
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=96.97 E-value=0.0028 Score=67.64 Aligned_cols=140 Identities=15% Similarity=0.117 Sum_probs=81.9
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC-CCHHHHHHHHHHHh--CCCCccccccCCCCcchHHHH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME-MSGIQLAMRMLGSV--GKLDQHKLRTGRLSSDDWPRI 287 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E-~~~~~i~~R~~a~~--~~i~~~~i~~g~l~~~~~~~~ 287 (452)
+..|.-++++|++|+|||..+...+.......|.+++|+.-- .-..++..++. .. .|+....+ .|....++.
T Consensus 36 ~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~-~l~~~g~~v~~~-~G~~~~~~~--- 110 (720)
T 2zj8_A 36 ILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQ-DWEKIGLRVAMA-TGDYDSKDE--- 110 (720)
T ss_dssp GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTG-GGGGGTCCEEEE-CSCSSCCCG---
T ss_pred hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHH-HHHhcCCEEEEe-cCCCCcccc---
Confidence 455788999999999999988666665544357889998643 44566666662 21 24443322 343332221
Q ss_pred HHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCc
Q psy2891 288 NDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCP 367 (452)
Q Consensus 288 ~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~ 367 (452)
++.+..+.+. |++.+...++.-.....++++||||-.+.+... .+...+..+...++ . ++.
T Consensus 111 -----~~~~~~Iiv~-----Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~----~r~~~~~~ll~~l~----~-~~~ 171 (720)
T 2zj8_A 111 -----WLGKYDIIIA-----TAEKFDSLLRHGSSWIKDVKILVADEIHLIGSR----DRGATLEVILAHML----G-KAQ 171 (720)
T ss_dssp -----GGGGCSEEEE-----CHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCT----TTHHHHHHHHHHHB----T-TBE
T ss_pred -----ccCCCCEEEE-----CHHHHHHHHHcChhhhhcCCEEEEECCcccCCC----cccHHHHHHHHHhh----c-CCe
Confidence 1234456654 456665544431110114899999999988653 23344455555554 1 667
Q ss_pred EEEEecC
Q psy2891 368 ILALSQL 374 (452)
Q Consensus 368 vi~l~ql 374 (452)
+|+++-.
T Consensus 172 ii~lSAT 178 (720)
T 2zj8_A 172 IIGLSAT 178 (720)
T ss_dssp EEEEECC
T ss_pred EEEEcCC
Confidence 7776644
No 120
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.97 E-value=0.0019 Score=66.30 Aligned_cols=156 Identities=16% Similarity=0.123 Sum_probs=85.8
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHh------CCCcEEEEeC------CCCHHHHHHHHHHHhCCCCccccccCC
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE------NKLPVAIFSM------EMSGIQLAMRMLGSVGKLDQHKLRTGR 278 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~------~g~~vl~~s~------E~~~~~i~~R~~a~~~~i~~~~i~~g~ 278 (452)
+++|+++.|.|++|+|||||+.-++--..-. .+..+.|+.- .++..+..... .. ..
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~----~~--------~~ 358 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENA----SK--------DA 358 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHH----CS--------ST
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHh----hh--------hc
Confidence 6799999999999999999998777532111 2345666543 23333332211 10 00
Q ss_pred CCcchHHHHHHHHHHHhCCCeE-EEc--CCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHH
Q psy2891 279 LSSDDWPRINDSIKKINKSQLY-IDE--TPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISR 355 (452)
Q Consensus 279 l~~~~~~~~~~a~~~l~~~~l~-i~~--~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~ 355 (452)
..... ..+.++. ....+. ..+ ...+|-.+-...+-...-.. +++++++|--+. +-+. .....+.+
T Consensus 359 ~~~~~-~~~~~~l---~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~-~p~lLlLDEPT~------gLD~-~~~~~i~~ 426 (538)
T 3ozx_A 359 LSTSS-WFFEEVT---KRLNLHRLLESNVNDLSGGELQKLYIAATLAK-EADLYVLDQPSS------YLDV-EERYIVAK 426 (538)
T ss_dssp TCTTS-HHHHHTT---TTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHS-CCSEEEEESTTT------TCCH-HHHHHHHH
T ss_pred cchhH-HHHHHHH---HHcCCHHHhcCChhhCCHHHHHHHHHHHHHHc-CCCEEEEeCCcc------CCCH-HHHHHHHH
Confidence 10111 1111111 111111 011 22455554433322222223 499999998432 2222 33457788
Q ss_pred HHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEec
Q psy2891 356 NLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYR 409 (452)
Q Consensus 356 ~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r 409 (452)
.|+.++++.+.+||+++|--. .+.+.||.|+.+..
T Consensus 427 ~l~~l~~~~g~tvi~vsHdl~-------------------~~~~~aDri~vl~~ 461 (538)
T 3ozx_A 427 AIKRVTRERKAVTFIIDHDLS-------------------IHDYIADRIIVFKG 461 (538)
T ss_dssp HHHHHHHHTTCEEEEECSCHH-------------------HHHHHCSEEEEEEE
T ss_pred HHHHHHHhCCCEEEEEeCCHH-------------------HHHHhCCEEEEEeC
Confidence 899999999999999987321 35667888888864
No 121
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=96.96 E-value=0.0021 Score=60.49 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=35.0
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGI 256 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~ 256 (452)
-+.+.++.+|+|||+++.++|..+|. .|.+|+++.+++...
T Consensus 94 vI~vts~kgG~GKTtva~nLA~~lA~-~G~rVLLID~D~~~~ 134 (286)
T 3la6_A 94 VLMMTGVSPSIGMTFVCANLAAVISQ-TNKRVLLIDCDMRKG 134 (286)
T ss_dssp EEEEEESSSSSSHHHHHHHHHHHHHT-TTCCEEEEECCTTTC
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHh-CCCCEEEEeccCCCC
Confidence 35666778999999999999999985 699999999998643
No 122
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.96 E-value=0.006 Score=53.85 Aligned_cols=114 Identities=12% Similarity=0.030 Sum_probs=62.3
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHH-----hCCCcEEEEeCC-CCHHHHHHHHHHHhCCCCccccccCCCCcch-HHHH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAI-----ENKLPVAIFSME-MSGIQLAMRMLGSVGKLDQHKLRTGRLSSDD-WPRI 287 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~-----~~g~~vl~~s~E-~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~-~~~~ 287 (452)
.-+++.+++|+|||..++-.+..... ..+.+++|+.-- .-..++..++.....++....+. |..+..+ ...+
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 117 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVY-GGTGYGKQKEAL 117 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEEC-SSSCSHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEE-CCCChHHHHHHh
Confidence 44889999999999876555555432 245678888643 23355555555443333332222 2222221 1111
Q ss_pred HHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccC
Q psy2891 288 NDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSAN 340 (452)
Q Consensus 288 ~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~ 340 (452)
..+.++.+. |++.+...+..-.....++++||||-.+.+...
T Consensus 118 ------~~~~~i~v~-----T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~ 159 (207)
T 2gxq_A 118 ------LRGADAVVA-----TPGRALDYLRQGVLDLSRVEVAVLDEADEMLSM 159 (207)
T ss_dssp ------HHCCSEEEE-----CHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHT
T ss_pred ------hCCCCEEEE-----CHHHHHHHHHcCCcchhhceEEEEEChhHhhcc
Confidence 124456664 455555544331111125899999999987653
No 123
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.95 E-value=0.0027 Score=64.04 Aligned_cols=35 Identities=26% Similarity=0.477 Sum_probs=27.6
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
+++| ++|.|+||+|||+++..++... +.+++++++
T Consensus 48 ~p~g--vLL~GppGtGKT~Laraia~~~----~~~f~~is~ 82 (476)
T 2ce7_A 48 MPKG--ILLVGPPGTGKTLLARAVAGEA----NVPFFHISG 82 (476)
T ss_dssp CCSE--EEEECCTTSSHHHHHHHHHHHH----TCCEEEEEG
T ss_pred CCCe--EEEECCCCCCHHHHHHHHHHHc----CCCeeeCCH
Confidence 4455 8899999999999999887643 567777764
No 124
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=96.94 E-value=0.016 Score=52.83 Aligned_cols=139 Identities=14% Similarity=0.165 Sum_probs=76.3
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEe-----CCC-----CHHHHHHHHHHHhC-CCCccccccCCCCcchH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFS-----MEM-----SGIQLAMRMLGSVG-KLDQHKLRTGRLSSDDW 284 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s-----~E~-----~~~~i~~R~~a~~~-~i~~~~i~~g~l~~~~~ 284 (452)
+++.+-.+|+|||++++.++..+. ++|.+|.||- ++. ..-....+-.+..+ +++...+..-.+.+..-
T Consensus 24 i~ItgT~t~vGKT~vs~gL~~~L~-~~G~~V~~fKPv~~g~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~p~~~~~p~s 102 (242)
T 3qxc_A 24 LFISATNTNAGKTTCARLLAQYCN-ACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDISFYRYHKVSA 102 (242)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH-HTTCCEEEECCEECSCCTTTCCCSHHHHHHHHHHTTCTTCCHHHHCCEECSSSSC
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHH-hCCCceEEEeeeecCCcccCCCCchHHHHHHHHHHHhCCCChHHeeeEEECCCCC
Confidence 555566699999999999999886 4799999994 321 11111111112333 55432221100100000
Q ss_pred HHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHh
Q psy2891 285 PRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEI 364 (452)
Q Consensus 285 ~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~ 364 (452)
..+. ..+.+. ......+.|.+.++++.. +.|+||||.-.-+..+.. .. ...-.+|+.+
T Consensus 103 p~~a---a~~~g~------~~~i~~~~I~~~~~~l~~---~~D~vlIEGagGl~~pl~-~~---------~~~adlA~~l 160 (242)
T 3qxc_A 103 PLIA---QQEEDP------NAPIDTDNLTQRLHNFTK---TYDLVIVEGAGGLCVPIT-LE---------ENMLDFALKL 160 (242)
T ss_dssp HHHH---HHHHCT------TCCCCHHHHHHHHHHGGG---TCSEEEEECCSCTTCBSS-SS---------CBHHHHHHHH
T ss_pred hHHH---HHHcCC------CCcCCHHHHHHHHHHHHh---cCCEEEEECCCCcccccc-cc---------chHHHHHHHc
Confidence 0000 001110 014567788877766543 389999999876554321 11 1224568889
Q ss_pred CCcEEEEecCCcc
Q psy2891 365 NCPILALSQLNRS 377 (452)
Q Consensus 365 ~i~vi~l~ql~r~ 377 (452)
++|||+++-...+
T Consensus 161 ~~pVILV~~~~lg 173 (242)
T 3qxc_A 161 KAKMLLISHDNLG 173 (242)
T ss_dssp TCEEEEEECCSTT
T ss_pred CCCEEEEEcCCCc
Confidence 9999999876543
No 125
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=96.92 E-value=0.0053 Score=65.33 Aligned_cols=142 Identities=13% Similarity=0.103 Sum_probs=79.8
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC-CHHHHHHHHHHHh--CCCCccccccCCCCcchHHHH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM-SGIQLAMRMLGSV--GKLDQHKLRTGRLSSDDWPRI 287 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~-~~~~i~~R~~a~~--~~i~~~~i~~g~l~~~~~~~~ 287 (452)
+..|.-++++|++|+|||+.+...+..... .+.+++|++--- -..++..++ ... .|+....+ .|.....+.
T Consensus 37 i~~~~~~lv~apTGsGKT~~~~l~il~~~~-~~~~~l~i~P~r~La~q~~~~~-~~~~~~g~~v~~~-~G~~~~~~~--- 110 (702)
T 2p6r_A 37 VFSGKNLLLAMPTAAGKTLLAEMAMVREAI-KGGKSLYVVPLRALAGEKYESF-KKWEKIGLRIGIS-TGDYESRDE--- 110 (702)
T ss_dssp HTTCSCEEEECSSHHHHHHHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHH-TTTTTTTCCEEEE-CSSCBCCSS---
T ss_pred HhCCCcEEEEcCCccHHHHHHHHHHHHHHH-hCCcEEEEeCcHHHHHHHHHHH-HHHHhcCCEEEEE-eCCCCcchh---
Confidence 445788999999999999988877776654 577899987432 233444444 111 13332222 233221110
Q ss_pred HHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCc
Q psy2891 288 NDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCP 367 (452)
Q Consensus 288 ~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~ 367 (452)
.+.+..+.+. |++.+...++.-.....++++||||-.+.+... .+...+..+...++.+ ..++.
T Consensus 111 -----~~~~~~Iiv~-----Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~----~r~~~~~~ll~~l~~~--~~~~~ 174 (702)
T 2p6r_A 111 -----HLGDCDIIVT-----TSEKADSLIRNRASWIKAVSCLVVDEIHLLDSE----KRGATLEILVTKMRRM--NKALR 174 (702)
T ss_dssp -----CSTTCSEEEE-----EHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCT----TTHHHHHHHHHHHHHH--CTTCE
T ss_pred -----hccCCCEEEE-----CHHHHHHHHHcChhHHhhcCEEEEeeeeecCCC----CcccHHHHHHHHHHhc--CcCce
Confidence 1223455553 455555544331110114889999999988653 2334455566666543 23577
Q ss_pred EEEEecC
Q psy2891 368 ILALSQL 374 (452)
Q Consensus 368 vi~l~ql 374 (452)
+|+++-.
T Consensus 175 ii~lSAT 181 (702)
T 2p6r_A 175 VIGLSAT 181 (702)
T ss_dssp EEEEECC
T ss_pred EEEECCC
Confidence 7777644
No 126
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.92 E-value=0.0071 Score=60.43 Aligned_cols=65 Identities=20% Similarity=0.134 Sum_probs=50.8
Q ss_pred ccccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHH
Q psy2891 194 VTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLA 259 (452)
Q Consensus 194 ~~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~ 259 (452)
...+.||++.+|.+ ..+.+|+-.+|.|+||+|||+++..++.+.+.+.+.-++|...-....+..
T Consensus 132 ~e~l~TGir~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~iGerttev~ 196 (473)
T 1sky_E 132 VEILETGIKVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGN 196 (473)
T ss_dssp CCEECCSCHHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHHH
T ss_pred CccccccchHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeeeccCchHHH
Confidence 34688999999987 357789999999999999999999999998765566666665555544433
No 127
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.92 E-value=0.0058 Score=53.88 Aligned_cols=38 Identities=16% Similarity=0.276 Sum_probs=32.6
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS 254 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~ 254 (452)
+.+..+..|+|||+++.++|..++. .|.+|+++.++..
T Consensus 4 i~v~s~kgG~GKTt~a~~la~~la~-~g~~vlliD~D~~ 41 (206)
T 4dzz_A 4 ISFLNPKGGSGKTTAVINIATALSR-SGYNIAVVDTDPQ 41 (206)
T ss_dssp EEECCSSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCTT
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHH-CCCeEEEEECCCC
Confidence 3455688999999999999999986 7999999999843
No 128
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.88 E-value=0.0081 Score=59.01 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=28.7
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
++.-++|.|+||+|||++|..++.. .+.+++++++.
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~----~~~~~~~v~~~ 182 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE----SNATFFNISAA 182 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH----TTCEEEEECSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh----hcCcEEEeeHH
Confidence 4457999999999999999988553 46778888764
No 129
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.85 E-value=0.0059 Score=58.36 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=29.3
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
+..+..-++|.|+||+|||++|..++... +.+++++++
T Consensus 47 ~~~~~~~vLl~GppGtGKT~la~aia~~~----~~~~~~v~~ 84 (322)
T 3eie_A 47 NRKPTSGILLYGPPGTGKSYLAKAVATEA----NSTFFSVSS 84 (322)
T ss_dssp TCCCCCEEEEECSSSSCHHHHHHHHHHHH----TCEEEEEEH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHH----CCCEEEEch
Confidence 34455569999999999999999887653 567777755
No 130
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.84 E-value=0.011 Score=57.65 Aligned_cols=132 Identities=14% Similarity=0.221 Sum_probs=78.2
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHh------CC----------CcEEEEeCC------CCH----
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE------NK----------LPVAIFSME------MSG---- 255 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~------~g----------~~vl~~s~E------~~~---- 255 (452)
..|+.+.--+.+|+++.|.|++|+|||||+.-++--..-. .| ..+.|+.-+ ++.
T Consensus 25 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni 104 (372)
T 1v43_A 25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENI 104 (372)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHH
Confidence 3566664468999999999999999999988776422100 01 124443211 222
Q ss_pred -----------HHHHHHHHH--HhCCCCcc-ccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCC--CC---HHHHHHHH
Q psy2891 256 -----------IQLAMRMLG--SVGKLDQH-KLRTGRLSSDDWPRINDSIKKINKSQLYIDETPS--LN---VIELRANS 316 (452)
Q Consensus 256 -----------~~i~~R~~a--~~~~i~~~-~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~--~t---~~~i~~~i 316 (452)
.+...|... ...++... .-.-..+|-.+.+|+.-|..-+.+.++.+.|.|- +. -.+++..+
T Consensus 105 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 184 (372)
T 1v43_A 105 AFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEI 184 (372)
T ss_dssp HTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 222222211 12333211 1122468888888887777777778888888763 33 24566667
Q ss_pred HHHHHHcCCccEEEEcCc
Q psy2891 317 RRLSRQCGKIGVIIIDYL 334 (452)
Q Consensus 317 ~~~~~~~~~~~~vvID~l 334 (452)
+++.++.| ..+|++-+=
T Consensus 185 ~~l~~~~g-~tvi~vTHd 201 (372)
T 1v43_A 185 KKLQQKLK-VTTIYVTHD 201 (372)
T ss_dssp HHHHHHHT-CEEEEEESC
T ss_pred HHHHHhCC-CEEEEEeCC
Confidence 77766655 677777664
No 131
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.84 E-value=0.0056 Score=58.76 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=28.7
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
.+++|.|++|+|||+++.+++... +.+++|+++.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~----~~~~~~~~~~ 64 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL----NLPYIYLDLR 64 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH----TCCEEEEEGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc----CCCEEEEEch
Confidence 499999999999999999998765 2358899876
No 132
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.83 E-value=0.0012 Score=57.54 Aligned_cols=47 Identities=17% Similarity=0.340 Sum_probs=34.7
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
.||+- .-..+|.+++|.|.||+||||++..++..... .|.+|.+++.
T Consensus 3 ~~~~~-~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~-~~~~~~~~~~ 49 (186)
T 2yvu_A 3 ALTTY-KCIEKGIVVWLTGLPGSGKTTIATRLADLLQK-EGYRVEVLDG 49 (186)
T ss_dssp ------CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEH
T ss_pred ccccc-cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHh-cCCeEEEeeH
Confidence 34552 22457899999999999999999999988753 6788888863
No 133
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.0075 Score=60.05 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=29.7
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
|+.+..=+++.||||+|||.+|..+|... +.+.+.+++
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAkAiA~e~----~~~fi~vs~ 276 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCARAVANRT----DATFIRVIG 276 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHHHHHHHH----TCEEEEEEG
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhcc----CCCeEEEEh
Confidence 56555569999999999999999888764 456666654
No 134
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=96.79 E-value=0.0084 Score=55.22 Aligned_cols=38 Identities=24% Similarity=0.439 Sum_probs=33.7
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS 254 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~ 254 (452)
+.+.++.+|+|||+++.++|..++. .|.+|+++.++..
T Consensus 5 I~v~s~kgGvGKTt~a~~LA~~la~-~g~~VlliD~D~~ 42 (263)
T 1hyq_A 5 ITVASGKGGTGKTTITANLGVALAQ-LGHDVTIVDADIT 42 (263)
T ss_dssp EEEEESSSCSCHHHHHHHHHHHHHH-TTCCEEEEECCCS
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHh-CCCcEEEEECCCC
Confidence 5667889999999999999999985 6999999999863
No 135
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.79 E-value=0.0097 Score=61.90 Aligned_cols=160 Identities=14% Similarity=0.109 Sum_probs=87.2
Q ss_pred CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCC-----CcEEEEeCC------CCHHHHHHHHHHHhCCCCccccccC
Q psy2891 209 SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENK-----LPVAIFSME------MSGIQLAMRMLGSVGKLDQHKLRTG 277 (452)
Q Consensus 209 gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g-----~~vl~~s~E------~~~~~i~~R~~a~~~~i~~~~i~~g 277 (452)
|-+.+|+++.|.|++|+|||||+.-++--..-..| ..+.|+.-+ .+..+... ... . +
T Consensus 373 G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~---~~~--------~-~ 440 (608)
T 3j16_B 373 GEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFF---KKI--------R-G 440 (608)
T ss_dssp EECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHH---HHC--------S-S
T ss_pred CccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHH---HHh--------h-c
Confidence 34677799999999999999999877653311123 246665433 22333221 110 1 1
Q ss_pred CCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHH
Q psy2891 278 RLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNL 357 (452)
Q Consensus 278 ~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~L 357 (452)
.... .....++.+.+.-..+.-.....+|-.+-....-...-.. +++++++|--+. +-+. .....+.+.|
T Consensus 441 ~~~~--~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~-~p~lLlLDEPT~------gLD~-~~~~~i~~ll 510 (608)
T 3j16_B 441 QFLN--PQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGI-PADIYLIDEPSA------YLDS-EQRIICSKVI 510 (608)
T ss_dssp TTTS--HHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTS-CCSEEEECCTTT------TCCH-HHHHHHHHHH
T ss_pred cccc--HHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHh-CCCEEEEECCCC------CCCH-HHHHHHHHHH
Confidence 1111 1122233333321111111123566555544322222223 499999998432 2232 2345778888
Q ss_pred HHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEec
Q psy2891 358 KGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYR 409 (452)
Q Consensus 358 k~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r 409 (452)
+.++++.+.+||+++|--. .+...||.|+.+..
T Consensus 511 ~~l~~~~g~tviivtHdl~-------------------~~~~~aDrvivl~~ 543 (608)
T 3j16_B 511 RRFILHNKKTAFIVEHDFI-------------------MATYLADKVIVFEG 543 (608)
T ss_dssp HHHHHHHTCEEEEECSCHH-------------------HHHHHCSEEEECEE
T ss_pred HHHHHhCCCEEEEEeCCHH-------------------HHHHhCCEEEEEeC
Confidence 9988889999999988321 24556777777753
No 136
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.74 E-value=0.011 Score=57.27 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=27.8
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
+..-++|.|+||+|||++|..++.. .+.+++++++
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~----~~~~~~~i~~ 150 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ----SGATFFSISA 150 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH----TTCEEEEEEG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH----cCCeEEEEeh
Confidence 3446899999999999999988754 3567777776
No 137
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.73 E-value=0.0095 Score=59.43 Aligned_cols=66 Identities=15% Similarity=0.091 Sum_probs=52.3
Q ss_pred ccccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHH
Q psy2891 194 VTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAM 260 (452)
Q Consensus 194 ~~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~ 260 (452)
...+.||++.+|-+. .+-+|+=..|.|++|+|||+++.+++.+.+..++.-++|.-..+..+++.+
T Consensus 134 ~e~l~TGir~ID~l~-pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~iGER~rEv~e 199 (482)
T 2ck3_D 134 QEILVTGIKVVDLLA-PYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGND 199 (482)
T ss_dssp CCEECCSCHHHHHHS-CEETTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEESCCHHHHHH
T ss_pred CcCCccceEEEeccc-ccccCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEECCCcchHHHH
Confidence 346899999999864 588999999999999999999999999976544445677766666666543
No 138
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.73 E-value=0.0078 Score=58.39 Aligned_cols=37 Identities=19% Similarity=0.272 Sum_probs=28.1
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
..+..-++|.|+||+|||++|..++... +.+++++++
T Consensus 81 ~~~~~~iLL~GppGtGKT~la~ala~~~----~~~~~~v~~ 117 (355)
T 2qp9_X 81 RKPTSGILLYGPPGTGKSYLAKAVATEA----NSTFFSVSS 117 (355)
T ss_dssp CCCCCCEEEECSTTSCHHHHHHHHHHHH----TCEEEEEEH
T ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh----CCCEEEeeH
Confidence 4444458899999999999999888765 456766654
No 139
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.73 E-value=0.011 Score=53.53 Aligned_cols=53 Identities=19% Similarity=0.236 Sum_probs=34.3
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCC----cEEEEeCCC-CHHHHHHHHH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKL----PVAIFSMEM-SGIQLAMRML 263 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~----~vl~~s~E~-~~~~i~~R~~ 263 (452)
+..|+.+++.|++|+|||++...++.......+. .++|..... ...++..++.
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~ 130 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVA 130 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHH
Confidence 3457899999999999998777776665444443 677665432 2334444443
No 140
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.68 E-value=0.017 Score=54.13 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=27.5
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
++.-++|.|+||+|||+++..++... +.+.+++++
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~----~~~~~~i~~ 87 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC----SATFLNISA 87 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT----TCEEEEEES
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh----CCCeEEeeH
Confidence 45679999999999999999887643 456666665
No 141
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.67 E-value=0.0017 Score=66.43 Aligned_cols=38 Identities=13% Similarity=0.138 Sum_probs=30.6
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM 253 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~ 253 (452)
.+...++|.|+||+|||+++..++... |.+++++++..
T Consensus 75 ~~~~~lLL~GppGtGKTtla~~la~~l----~~~~i~in~s~ 112 (516)
T 1sxj_A 75 GVFRAAMLYGPPGIGKTTAAHLVAQEL----GYDILEQNASD 112 (516)
T ss_dssp TSCSEEEEECSTTSSHHHHHHHHHHHT----TCEEEEECTTS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc----CCCEEEEeCCC
Confidence 345689999999999999999887654 67888887654
No 142
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.63 E-value=0.0011 Score=57.91 Aligned_cols=39 Identities=18% Similarity=0.443 Sum_probs=30.3
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
++.+|++++|.|+||+||||++..++.. .+.+.++++.+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~----~~~g~i~i~~d 43 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL----PGVPKVHFHSD 43 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC----SSSCEEEECTT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc----cCCCeEEEccc
Confidence 5889999999999999999999988653 23456666654
No 143
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.57 E-value=0.0028 Score=56.00 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=33.4
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
.++|.++.|.|++|+||||++..++...- ..|..+.|+..
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~ 61 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDG 61 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecC
Confidence 46899999999999999999999998775 45776667763
No 144
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.53 E-value=0.0082 Score=64.19 Aligned_cols=111 Identities=18% Similarity=0.297 Sum_probs=63.1
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHH
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRIND 289 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~ 289 (452)
|+.+..=+++.||||+|||+++..+|.. .|.+++++++. ++..+ ...+
T Consensus 234 g~~~p~GILL~GPPGTGKT~LAraiA~e----lg~~~~~v~~~----~l~sk----------------~~ge-------- 281 (806)
T 3cf2_A 234 GVKPPRGILLYGPPGTGKTLIARAVANE----TGAFFFLINGP----EIMSK----------------LAGE-------- 281 (806)
T ss_dssp CCCCCCEEEEECCTTSCHHHHHHHHHTT----TTCEEEEEEHH----HHHSS----------------CTTH--------
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHH----hCCeEEEEEhH----Hhhcc----------------cchH--------
Confidence 4555455999999999999999887753 36667666542 22111 0100
Q ss_pred HHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCC---CCCCHHHHHHHHHHHHHHHHHHhCC
Q psy2891 290 SIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANS---RGENRATEISEISRNLKGLAKEINC 366 (452)
Q Consensus 290 a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~---~~~~~~~~~~~i~~~Lk~lA~~~~i 366 (452)
+-..++..... .+.+ .+.+||||.+..+.... .+......+..+...+..+....++
T Consensus 282 ------------------se~~lr~lF~~-A~~~-~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V 341 (806)
T 3cf2_A 282 ------------------SESNLRKAFEE-AEKN-APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp ------------------HHHHHHHHHHH-HTTS-CSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCE
T ss_pred ------------------HHHHHHHHHHH-HHHc-CCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCE
Confidence 01112222222 2334 48999999999987543 1223333445555555555555566
Q ss_pred cEEEEe
Q psy2891 367 PILALS 372 (452)
Q Consensus 367 ~vi~l~ 372 (452)
.||..+
T Consensus 342 ~VIaaT 347 (806)
T 3cf2_A 342 IVMAAT 347 (806)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 555554
No 145
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.53 E-value=0.014 Score=53.62 Aligned_cols=31 Identities=29% Similarity=0.488 Sum_probs=25.1
Q ss_pred EEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 217 IIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 217 ~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
++|.|+||+|||+++..++... +.+++++++
T Consensus 48 vll~G~~GtGKT~la~~la~~~----~~~~~~i~~ 78 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEA----KVPFFTISG 78 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH----TCCEEEECS
T ss_pred EEEECcCCCCHHHHHHHHHHHc----CCCEEEEeH
Confidence 8899999999999999887653 456766654
No 146
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.53 E-value=0.0054 Score=59.40 Aligned_cols=131 Identities=15% Similarity=0.192 Sum_probs=77.3
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHh------CC---------------CcEEEEeCC------CCH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE------NK---------------LPVAIFSME------MSG 255 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~------~g---------------~~vl~~s~E------~~~ 255 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++--..-. .| .++.|+.-+ ++.
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv 99 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTA 99 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCH
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCH
Confidence 566665568999999999999999999998777422100 01 134554221 232
Q ss_pred HHH---------------HHHHHHH--hCCCCcc-ccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCC-----HHHH
Q psy2891 256 IQL---------------AMRMLGS--VGKLDQH-KLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLN-----VIEL 312 (452)
Q Consensus 256 ~~i---------------~~R~~a~--~~~i~~~-~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t-----~~~i 312 (452)
.+. ..|.... ..|+... .-.-+.+|-.+.+|+.-|..-+.+.++.+.|.|-.. -.++
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l 179 (353)
T 1oxx_K 100 FENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSA 179 (353)
T ss_dssp HHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence 221 1122111 1233210 111245777788887777666677788888766322 4567
Q ss_pred HHHHHHHHHHcCCccEEEEcCc
Q psy2891 313 RANSRRLSRQCGKIGVIIIDYL 334 (452)
Q Consensus 313 ~~~i~~~~~~~~~~~~vvID~l 334 (452)
+..++++.++.| ..+|++-+=
T Consensus 180 ~~~l~~l~~~~g-~tvi~vTHd 200 (353)
T 1oxx_K 180 RALVKEVQSRLG-VTLLVVSHD 200 (353)
T ss_dssp HHHHHHHHHHHC-CEEEEEESC
T ss_pred HHHHHHHHHhcC-CEEEEEeCC
Confidence 777777766655 677777664
No 147
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=96.50 E-value=0.0042 Score=59.50 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=36.1
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS 254 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~ 254 (452)
.+++.+|.+|+||||++.++|..+|. .|++|+.++++..
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~-~G~rVLlvD~D~~ 53 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMAR-SGKKTLVISTDPA 53 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEECCSS
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHH-CCCcEEEEeCCCC
Confidence 68999999999999999999999985 6999999999973
No 148
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.50 E-value=0.0034 Score=54.32 Aligned_cols=38 Identities=21% Similarity=0.365 Sum_probs=31.5
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEe
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFS 250 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s 250 (452)
.+|.+++|.|++|+||||++..++..... .|.+++++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d 40 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLD 40 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEEC
Confidence 67899999999999999999998887643 577887775
No 149
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.49 E-value=0.0029 Score=55.87 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=31.6
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
.-++|.|+||+|||+++..++.... ..+.+|+|+++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~-~~~~~~~~~~~~ 91 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA-KRNVSSLIVYVP 91 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH-TTTCCEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEEhH
Confidence 4688999999999999999998876 468899998763
No 150
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=96.48 E-value=0.023 Score=56.59 Aligned_cols=131 Identities=10% Similarity=0.079 Sum_probs=69.1
Q ss_pred CCcEEEEEeCCCCChhHHH-HHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHH
Q psy2891 213 PGDLIIVAGRPSMGKTAFS-LNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSI 291 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~-l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~ 291 (452)
+|..+++.|++|+|||..+ +.++..+. ..|.+++|++ |...++..+.....+++.. +..|.+.. .
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~-~~g~~~lvl~---Pt~~La~Q~~~~~~~~~v~-~~~~~~~~---------~ 66 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAV-KKRLRTVILA---PTRVVASEMYEALRGEPIR-YMTPAVQS---------E 66 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHH-HTTCCEEEEE---SSHHHHHHHHHHTTTSCEE-EC----------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH-hCCCCEEEEC---cHHHHHHHHHHHhCCCeEE-EEecCccc---------c
Confidence 4778999999999999876 44443443 5778899987 3455555555544454433 12221110 0
Q ss_pred HHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEE
Q psy2891 292 KKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILAL 371 (452)
Q Consensus 292 ~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l 371 (452)
. -.+..+.+. +...+...+.. .....++++||||-.+.+.. . .......|+.++...++.++++
T Consensus 67 ~-~~~~~~~~~-----~~~~l~~~l~~-~~~~~~l~~vViDEaH~~~~-----~----~~~~~~~l~~~~~~~~~~~l~~ 130 (431)
T 2v6i_A 67 R-TGNEIVDFM-----CHSTFTMKLLQ-GVRVPNYNLYIMDEAHFLDP-----A----SVAARGYIETRVSMGDAGAIFM 130 (431)
T ss_dssp ---CCCSEEEE-----EHHHHHHHHHH-TCCCCCCSEEEEESTTCCSH-----H----HHHHHHHHHHHHHTTSCEEEEE
T ss_pred C-CCCceEEEE-----chHHHHHHHhc-CccccCCCEEEEeCCccCCc-----c----HHHHHHHHHHHhhCCCCcEEEE
Confidence 0 001122221 22233222211 01123589999999987621 1 1123345555555567888887
Q ss_pred ec
Q psy2891 372 SQ 373 (452)
Q Consensus 372 ~q 373 (452)
+-
T Consensus 131 SA 132 (431)
T 2v6i_A 131 TA 132 (431)
T ss_dssp ES
T ss_pred eC
Confidence 73
No 151
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.46 E-value=0.0035 Score=55.80 Aligned_cols=41 Identities=22% Similarity=0.473 Sum_probs=33.1
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
..+|+++.|.|++|+|||||+..++...-. .|..+.+++.+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~-~g~~~g~v~~d 59 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA-QGLPAEVVPMD 59 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHH-TTCCEEEEESG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh-cCCceEEEecC
Confidence 468999999999999999999988876642 35567888765
No 152
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.44 E-value=0.0034 Score=57.80 Aligned_cols=41 Identities=17% Similarity=0.344 Sum_probs=35.9
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM 253 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~ 253 (452)
..+.-++++.|.+|+||||++.+++...+ .|.+|+.++++.
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~--~g~~v~vvd~D~ 51 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLE--DNYKVAYVNLDT 51 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHT--TTSCEEEEECCS
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHH--CCCeEEEEeCCC
Confidence 34456899999999999999999999987 689999999885
No 153
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=96.43 E-value=0.021 Score=51.21 Aligned_cols=116 Identities=17% Similarity=0.066 Sum_probs=55.9
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHH--------hCCCcEEEEeCCC-CHHHHHHHHHHHh-CCCCccccccCCCCcch
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAI--------ENKLPVAIFSMEM-SGIQLAMRMLGSV-GKLDQHKLRTGRLSSDD 283 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~--------~~g~~vl~~s~E~-~~~~i~~R~~a~~-~~i~~~~i~~g~l~~~~ 283 (452)
|.-+++.|++|+|||...+-.+..... ..+.+++|+.--. -..++..++.... .++....+..|.-..++
T Consensus 57 ~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQ 136 (228)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------C
T ss_pred CCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHH
Confidence 345799999999999654443333221 1467788886321 1233444443321 22222222222222222
Q ss_pred HHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccC
Q psy2891 284 WPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSAN 340 (452)
Q Consensus 284 ~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~ 340 (452)
+..+ ..+.++.+. |++.+...+..-.....++++||||-.+.+...
T Consensus 137 ~~~~------~~~~~iiv~-----Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~ 182 (228)
T 3iuy_A 137 IEDI------SKGVDIIIA-----TPGRLNDLQMNNSVNLRSITYLVIDEADKMLDM 182 (228)
T ss_dssp HHHH------HSCCSEEEE-----CHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHT
T ss_pred HHHh------cCCCCEEEE-----CHHHHHHHHHcCCcCcccceEEEEECHHHHhcc
Confidence 2221 123355553 455555533221111125899999999987653
No 154
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.41 E-value=0.003 Score=58.44 Aligned_cols=38 Identities=32% Similarity=0.560 Sum_probs=31.6
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
++.+++|+|.||+||||++..++..+. ..|.++++++.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~-~~g~~~i~~~~ 40 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILS-KNNIDVIVLGS 40 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEECT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH-hCCCEEEEECc
Confidence 456899999999999999999998764 36788877765
No 155
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.40 E-value=0.002 Score=56.02 Aligned_cols=28 Identities=11% Similarity=0.247 Sum_probs=23.5
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
|-.+|.+++|.|++|+||||++..++..
T Consensus 1 ~~~~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 1 GSHMRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3467899999999999999999988764
No 156
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=96.37 E-value=0.018 Score=52.25 Aligned_cols=115 Identities=10% Similarity=-0.018 Sum_probs=59.8
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHH-------hCCCcEEEEeCCCC-HHHHHHHHHH--HhCCCCccccccCCCCcc-
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAI-------ENKLPVAIFSMEMS-GIQLAMRMLG--SVGKLDQHKLRTGRLSSD- 282 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~-------~~g~~vl~~s~E~~-~~~i~~R~~a--~~~~i~~~~i~~g~l~~~- 282 (452)
|.-+++.|++|+|||...+-.+..... ..+.+++|++---. ..++..++.. ...++....+..| .+..
T Consensus 66 g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~-~~~~~ 144 (242)
T 3fe2_A 66 GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGG-APKGP 144 (242)
T ss_dssp TCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTT-SCHHH
T ss_pred CCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECC-CChHH
Confidence 456889999999999765444444332 13567888863221 2234333322 2234443333322 2221
Q ss_pred hHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccC
Q psy2891 283 DWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSAN 340 (452)
Q Consensus 283 ~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~ 340 (452)
+...+ ..+..+.+. |++.+...+..-.....++++||||-.+.+...
T Consensus 145 ~~~~~------~~~~~I~v~-----Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~ 191 (242)
T 3fe2_A 145 QIRDL------ERGVEICIA-----TPGRLIDFLECGKTNLRRTTYLVLDEADRMLDM 191 (242)
T ss_dssp HHHHH------HHCCSEEEE-----CHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHT
T ss_pred HHHHh------cCCCCEEEE-----CHHHHHHHHHcCCCCcccccEEEEeCHHHHhhh
Confidence 11111 123455554 456665554332111225889999999987753
No 157
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.36 E-value=0.012 Score=64.07 Aligned_cols=108 Identities=17% Similarity=0.217 Sum_probs=52.6
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHh------CCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIE------NKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRIND 289 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~------~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~ 289 (452)
-++|.|+||+|||+++..++..+... .+.+++++++.. +. .|... .| +
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~--------l~---~g~~~----~g-----~------ 246 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGS--------LL---AGAKY----RG-----E------ 246 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------------------------C------
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHH--------hh---ccCcc----ch-----H------
Confidence 47899999999999999999987542 256677765511 00 00000 00 0
Q ss_pred HHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEE
Q psy2891 290 SIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPIL 369 (452)
Q Consensus 290 a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi 369 (452)
....+...+..+.... ++.++|||.++.+........ .......|+.+..+.++.+|
T Consensus 247 ------------------~~~~l~~~~~~~~~~~-~~~iL~IDEi~~l~~~~~~~g----~~~~~~~L~~~l~~~~i~~I 303 (854)
T 1qvr_A 247 ------------------FEERLKAVIQEVVQSQ-GEVILFIDELHTVVGAGKAEG----AVDAGNMLKPALARGELRLI 303 (854)
T ss_dssp ------------------HHHHHHHHHHHHHTTC-SSEEEEECCC-----------------------HHHHHTTCCCEE
T ss_pred ------------------HHHHHHHHHHHHHhcC-CCeEEEEecHHHHhccCCccc----hHHHHHHHHHHHhCCCeEEE
Confidence 0122333333333322 367999999998875431111 12334556666666778877
Q ss_pred EEe
Q psy2891 370 ALS 372 (452)
Q Consensus 370 ~l~ 372 (452)
..+
T Consensus 304 ~at 306 (854)
T 1qvr_A 304 GAT 306 (854)
T ss_dssp EEE
T ss_pred Eec
Confidence 765
No 158
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.35 E-value=0.0027 Score=55.46 Aligned_cols=29 Identities=41% Similarity=0.706 Sum_probs=25.2
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
|+.++.+++|.|+||+||||++..++...
T Consensus 1 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 1 GMQTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCSCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 46678899999999999999999988654
No 159
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.35 E-value=0.004 Score=59.06 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=35.9
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS 254 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~ 254 (452)
++.++.|+|..|+||||++.++|..++. .|.+|+.+.++..
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~-~G~~VlliD~D~~ 80 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSI-LGKRVLQIGCDPK 80 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEEESSS
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence 4567777799999999999999999985 6999999999853
No 160
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.34 E-value=0.0089 Score=59.86 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=29.6
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
..+..-++|.|+||+|||++|..++... .+.+++++++.
T Consensus 164 ~~~~~~vLL~GppGtGKT~lA~aia~~~---~~~~~~~v~~~ 202 (444)
T 2zan_A 164 RTPWRGILLFGPPGTGKSYLAKAVATEA---NNSTFFSISSS 202 (444)
T ss_dssp GCCCSEEEEECSTTSSHHHHHHHHHHHC---CSSEEEEECCC
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---CCCCEEEEeHH
Confidence 4455679999999999999999888754 25666666653
No 161
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.31 E-value=0.0039 Score=55.61 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=33.6
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEe
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFS 250 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s 250 (452)
+.+|.+++|.|+||+||||++..++...-...|.++.+++
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 5678899999999999999999998876423577788886
No 162
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.31 E-value=0.021 Score=53.64 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=27.2
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
.-++|.|+||+|||+++..++... +.+++++++.
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l----~~~~~~i~~~ 84 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLA----NAPFIKVEAT 84 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH----TCCEEEEEGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh----CCCEEEEcch
Confidence 357899999999999999888754 4577777654
No 163
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.017 Score=59.99 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=23.3
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGE 236 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~ 236 (452)
+.+|+++.|.|++|+|||||+.-++-
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhc
Confidence 67999999999999999999876664
No 164
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.28 E-value=0.032 Score=56.53 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=32.8
Q ss_pred EEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCc
Q psy2891 328 VIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNR 376 (452)
Q Consensus 328 ~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r 376 (452)
+||||.++.+... ....+...+..|.+.++..|+++|+.+|-..
T Consensus 300 vlvIDE~~~ll~~-----~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 300 VVLVDEFADLMMT-----VGKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEETHHHHHHH-----HHHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEeCHHHHHhh-----hhHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 8999999866531 1234556677777888899999999999644
No 165
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.28 E-value=0.037 Score=52.07 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=29.6
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCC----CcEEEEeC
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENK----LPVAIFSM 251 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g----~~vl~~s~ 251 (452)
++.-++|.|+||+|||+++..++..+.. .+ .++++++.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~-~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHR-LGYVRKGHLVSVTR 107 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHH-TTSSSSCCEEEECG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHh-cCCcCCCcEEEEcH
Confidence 4456999999999999999999887753 22 36777763
No 166
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=96.27 E-value=0.023 Score=57.10 Aligned_cols=65 Identities=17% Similarity=0.208 Sum_probs=50.6
Q ss_pred cccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHh-------CCCcEEEEeCCCCHHHHHH
Q psy2891 195 TGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE-------NKLPVAIFSMEMSGIQLAM 260 (452)
Q Consensus 195 ~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~-------~g~~vl~~s~E~~~~~i~~ 260 (452)
..+.||++.+|-+. .+-+|+=..|.|++|+|||++++..+.+.+.. .+..|+|.-.....+++.+
T Consensus 144 epl~TGiraID~l~-PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~ 215 (510)
T 2ck3_A 144 EPMQTGIKAVDSLV-PIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQ 215 (510)
T ss_dssp SBCCCSCHHHHHHS-CCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHH
T ss_pred ccccccceeecccc-ccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHH
Confidence 46889999999874 58899999999999999999988766666542 3445778777777666543
No 167
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=96.26 E-value=0.034 Score=50.16 Aligned_cols=115 Identities=14% Similarity=0.059 Sum_probs=60.7
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHH------hCCCcEEEEeCC-CCHHHHHHHHHHHhC--CCCccccccCCCCcchH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAI------ENKLPVAIFSME-MSGIQLAMRMLGSVG--KLDQHKLRTGRLSSDDW 284 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~------~~g~~vl~~s~E-~~~~~i~~R~~a~~~--~i~~~~i~~g~l~~~~~ 284 (452)
|.-+++.+++|+|||...+-.+..... ..+.+++|+.-- .-..++..++..... ++....+. |..+..+
T Consensus 62 ~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~-g~~~~~~- 139 (236)
T 2pl3_A 62 GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLII-GGKDLKH- 139 (236)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEEC-CC--CHH-
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEE-CCCCHHH-
Confidence 455899999999999865554544432 236678888642 223444544443222 22222222 2222111
Q ss_pred HHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHH-HHcCCccEEEEcCcchhccC
Q psy2891 285 PRINDSIKKINKSQLYIDETPSLNVIELRANSRRLS-RQCGKIGVIIIDYLQLMSAN 340 (452)
Q Consensus 285 ~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~-~~~~~~~~vvID~l~~i~~~ 340 (452)
....+.+.++.|. |++.+...+.... ....++++||||-.+.+...
T Consensus 140 -----~~~~~~~~~iiv~-----Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~ 186 (236)
T 2pl3_A 140 -----EAERINNINILVC-----TPGRLLQHMDETVSFHATDLQMLVLDEADRILDM 186 (236)
T ss_dssp -----HHHHHTTCSEEEE-----CHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHT
T ss_pred -----HHHhCCCCCEEEE-----CHHHHHHHHHhcCCcccccccEEEEeChHHHhcC
Confidence 1122344566664 4556655443311 01125889999999987653
No 168
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=96.26 E-value=0.0053 Score=59.54 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=36.7
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHH-hCCCcEEEEeCCCC
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAI-ENKLPVAIFSMEMS 254 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~-~~g~~vl~~s~E~~ 254 (452)
..+++.+|.+|+|||+++.++|..+|. +.|++|+.++++..
T Consensus 18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~ 59 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA 59 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 358899999999999999999999983 47999999999985
No 169
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.25 E-value=0.034 Score=49.09 Aligned_cols=114 Identities=17% Similarity=0.113 Sum_probs=55.3
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHh-----CCCcEEEEeCCCC-HHHHHHHHHHHhC--CCCccccccCCCCcchHHH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIE-----NKLPVAIFSMEMS-GIQLAMRMLGSVG--KLDQHKLRTGRLSSDDWPR 286 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~-----~g~~vl~~s~E~~-~~~i~~R~~a~~~--~i~~~~i~~g~l~~~~~~~ 286 (452)
.-+++.|++|+|||..++..+...... .+.+++|+.--.. ..++..+.+.... ++....+..+.-....+..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~ 128 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPE 128 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHh
Confidence 458899999999999988888766432 2568888864311 1231222222222 2222222111111222222
Q ss_pred HHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHH------HcCCccEEEEcCcchhcc
Q psy2891 287 INDSIKKINKSQLYIDETPSLNVIELRANSRRLSR------QCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 287 ~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~------~~~~~~~vvID~l~~i~~ 339 (452)
+. ....+.+. |++.+...+..... ...++++||||-.+.+..
T Consensus 129 ~~------~~~~i~v~-----T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~ 176 (216)
T 3b6e_A 129 VV------KSCDIIIS-----TAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK 176 (216)
T ss_dssp HH------HHCSEEEE-----EHHHHHHHHHC-------CCCGGGCSEEEETTC-----
T ss_pred hc------cCCCEEEE-----CHHHHHHHHhccCcccccccchhcccEEEEECchhhcc
Confidence 21 23456554 34555554443211 011478999999998853
No 170
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=96.25 E-value=0.032 Score=55.92 Aligned_cols=57 Identities=21% Similarity=0.201 Sum_probs=42.4
Q ss_pred CCCCcEEEEEeCCCCChhH-HHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCc
Q psy2891 211 LQPGDLIIVAGRPSMGKTA-FSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQ 271 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~-~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~ 271 (452)
+..++++++.|++|+|||. +++.++.++. ..|.+++|++ +..++...+.....|.+.
T Consensus 16 l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~-~~~~~~lvl~---Ptr~La~Q~~~~l~g~~v 73 (451)
T 2jlq_A 16 FRKKRLTIMDLHPGAGKTKRILPSIVREAL-LRRLRTLILA---PTRVVAAEMEEALRGLPI 73 (451)
T ss_dssp GSTTCEEEECCCTTSSCCTTHHHHHHHHHH-HTTCCEEEEE---SSHHHHHHHHHHTTTSCE
T ss_pred HhcCCeEEEECCCCCCHhhHHHHHHHHHHH-hcCCcEEEEC---CCHHHHHHHHHHhcCcee
Confidence 4557889999999999998 6777777665 4678899988 456666666655555543
No 171
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.24 E-value=0.003 Score=55.76 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=24.0
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.+.+|..++|.|+||+||||++..++...
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 47789999999999999999999998754
No 172
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.21 E-value=0.0055 Score=62.11 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=29.3
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
|..+..-++|.|+||+|||++|..++.. .+.+++++++
T Consensus 234 g~~~~~~vLL~GppGtGKT~lAraia~~----~~~~fv~vn~ 271 (489)
T 3hu3_A 234 GVKPPRGILLYGPPGTGKTLIARAVANE----TGAFFFLING 271 (489)
T ss_dssp TCCCCCEEEEECSTTSSHHHHHHHHHHH----CSSEEEEEEH
T ss_pred CCCCCCcEEEECcCCCCHHHHHHHHHHH----hCCCEEEEEc
Confidence 3445556999999999999999888653 3677888874
No 173
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.21 E-value=0.041 Score=48.41 Aligned_cols=23 Identities=26% Similarity=0.589 Sum_probs=21.1
Q ss_pred EEEEeCCCCChhHHHHHHHHHHH
Q psy2891 217 IIVAGRPSMGKTAFSLNIGEHIA 239 (452)
Q Consensus 217 ~~i~g~pg~GKT~~~l~ia~~~a 239 (452)
++|.|+||+|||+++..++..+.
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 89999999999999999988764
No 174
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.20 E-value=0.023 Score=54.06 Aligned_cols=35 Identities=14% Similarity=0.255 Sum_probs=27.6
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM 253 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~ 253 (452)
.+++++|+||+|||+++..++... +.++++++...
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l----~~~~~~i~~~~ 83 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDV----NADMMFVNGSD 83 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHT----TEEEEEEETTT
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHh----CCCEEEEcccc
Confidence 478999999999999999887543 56777777543
No 175
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=96.19 E-value=0.0053 Score=59.47 Aligned_cols=41 Identities=29% Similarity=0.391 Sum_probs=36.8
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS 254 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~ 254 (452)
...+++.+|.+|+||||++.++|..+|. .|++|+.++++..
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~-~G~rVLlvD~D~~ 65 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYLAE-KGLKVVIVSTDPA 65 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHHHH-SSCCEEEEECCTT
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence 3458899999999999999999999985 6999999999974
No 176
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.18 E-value=0.0067 Score=53.65 Aligned_cols=41 Identities=20% Similarity=0.373 Sum_probs=33.4
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
..+|.++.|.|++|+||||++..++.... ..+.+|.+++.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~-~~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR-EQGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHH-HTTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHh-hcCCeEEEeccC
Confidence 45678999999999999999998887664 356778888655
No 177
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=96.17 E-value=0.0058 Score=63.60 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=37.0
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS 254 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~ 254 (452)
+..+++++|.+|+|||+++.++|..+|. .|++|++++++..
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~-~G~rVLlvd~D~~ 47 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAE-QGKRVLLVSTDPA 47 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCTT
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHH-CCCcEEEEECCCC
Confidence 4568999999999999999999999985 7999999999963
No 178
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.17 E-value=0.0025 Score=57.31 Aligned_cols=36 Identities=8% Similarity=0.073 Sum_probs=23.4
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+++|+++.|.|++|+||||++.-++-..
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 455554458899999999999999999998877643
No 179
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.16 E-value=0.03 Score=57.38 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=24.0
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
+++|+++.|.|++|+|||||+.-++--
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 479999999999999999999887753
No 180
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.14 E-value=0.0068 Score=58.85 Aligned_cols=64 Identities=17% Similarity=0.192 Sum_probs=51.1
Q ss_pred ccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhC-CCcEEEEeCCCCHHHHHH
Q psy2891 196 GISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIEN-KLPVAIFSMEMSGIQLAM 260 (452)
Q Consensus 196 ~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~-g~~vl~~s~E~~~~~i~~ 260 (452)
.+.||+..+|-+. .+.+|+-+.|.|+||+|||+++.+++..++.+. +..|+|+-.....+++..
T Consensus 157 ~~~tGiraID~~~-pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~ 221 (422)
T 3ice_A 157 TEDLTARVLDLAS-PIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTE 221 (422)
T ss_dssp TTHHHHHHHHHHS-CCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHH
T ss_pred cccccceeeeeee-eecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHH
Confidence 4678888888753 588999999999999999999999998887543 345778777777777665
No 181
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=96.13 E-value=0.076 Score=54.57 Aligned_cols=148 Identities=15% Similarity=0.036 Sum_probs=75.6
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhC------CCcEEEEeCCC-CHHHHHHHHHHHh---CCC---CccccccCCC
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIEN------KLPVAIFSMEM-SGIQLAMRMLGSV---GKL---DQHKLRTGRL 279 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~------g~~vl~~s~E~-~~~~i~~R~~a~~---~~i---~~~~i~~g~l 279 (452)
.|.-+++.|++|+|||...+-.+....... +.+++|++--- -..|+..++.... .++ ....+..|.-
T Consensus 110 ~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 189 (563)
T 3i5x_A 110 EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTD 189 (563)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSC
T ss_pred CCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcC
Confidence 567899999999999965444444333332 23788886432 1233444443311 111 1111222211
Q ss_pred CcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHH-HcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHH
Q psy2891 280 SSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSR-QCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLK 358 (452)
Q Consensus 280 ~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~-~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk 358 (452)
...++..+. -.+.++.|. |++.+...+.+... ....+++||||-.+.+.... ....+..+...+.
T Consensus 190 ~~~~~~~~~-----~~~~~Iiv~-----Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~----f~~~~~~i~~~l~ 255 (563)
T 3i5x_A 190 FRAAMNKMN-----KLRPNIVIA-----TPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIG----FRDDLETISGILN 255 (563)
T ss_dssp HHHHHHHHH-----HHCCSEEEE-----CHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTT----THHHHHHHHHHHH
T ss_pred HHHHHHHHh-----cCCCCEEEE-----CcHHHHHHHHhccccccccceEEEEeCHHHHhccc----hHHHHHHHHHhhh
Confidence 111121111 113456664 55666666655422 22358999999999887532 3344555555555
Q ss_pred HHHHH--hCCcEEEEecC
Q psy2891 359 GLAKE--INCPILALSQL 374 (452)
Q Consensus 359 ~lA~~--~~i~vi~l~ql 374 (452)
..... .++.+++++-.
T Consensus 256 ~~~~~~~~~~~~l~~SAT 273 (563)
T 3i5x_A 256 EKNSKSADNIKTLLFSAT 273 (563)
T ss_dssp HHCSSCTTCCEEEEEESS
T ss_pred hccccCccCceEEEEEcc
Confidence 43321 25667776643
No 182
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=96.11 E-value=0.024 Score=56.86 Aligned_cols=65 Identities=14% Similarity=0.190 Sum_probs=50.4
Q ss_pred ccccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHH
Q psy2891 194 VTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAM 260 (452)
Q Consensus 194 ~~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~ 260 (452)
...+.||++.+|-+. .+-+|+=..|.|++|+|||+++++...+.+ ..+..|+|.-.....+++.+
T Consensus 143 ~epl~TGiraID~l~-PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~-~~dv~~V~~~iGeR~~Ev~~ 207 (502)
T 2qe7_A 143 HEPLQTGIKAIDSMI-PIGRGQRELIIGDRQTGKTTIAIDTIINQK-GQDVICIYVAIGQKQSTVAG 207 (502)
T ss_dssp CSBCCCSCHHHHHSS-CCBTTCBCEEEECSSSCHHHHHHHHHHGGG-SCSEEEEEEEESCCHHHHHH
T ss_pred CCccccceeeccccc-ccccCCEEEEECCCCCCchHHHHHHHHHhh-cCCcEEEEEECCCcchHHHH
Confidence 346889999999864 588999999999999999999887777664 34445677777766666543
No 183
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.10 E-value=0.021 Score=59.28 Aligned_cols=35 Identities=17% Similarity=0.362 Sum_probs=27.8
Q ss_pred cccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 204 LDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 204 LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
|+.+.--+++|+.+.|.|++|+||||++.-++.-.
T Consensus 359 l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred cccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44443347899999999999999999988776543
No 184
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.08 E-value=0.0019 Score=57.11 Aligned_cols=37 Identities=19% Similarity=0.336 Sum_probs=28.8
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
..|.....|+++..-+++.||||+|||++|..++..+
T Consensus 46 ~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 46 GALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3334444567777789999999999999999888765
No 185
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.08 E-value=0.059 Score=55.12 Aligned_cols=150 Identities=12% Similarity=0.130 Sum_probs=78.8
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhC---CCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchHHHH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIEN---KLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRI 287 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~---g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~ 287 (452)
+..+-=++|+|.||+|||+++..++..++... ..+++.+..-+ .+ ++...+++ ++...-.+ +.++.
T Consensus 211 L~k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg--~e-----Ls~~~~lP--Hl~~~Vvt--d~~~a 279 (574)
T 2iut_A 211 LAKMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM--LE-----LSIYEGIP--HLLCPVVT--DMKEA 279 (574)
T ss_dssp GGGSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS--HH-----HHTTTTCT--TBSSSCBC--CHHHH
T ss_pred hhhCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh--hh-----hHhhcCCC--cccceeeC--CHHHH
Confidence 33444689999999999999999999987532 12355566554 22 12223332 11111111 22333
Q ss_pred HHHHHHHh----CCCeEEEcCCCCCHHHHHHHHHHHHHH---------------------cC-CccEEEEcCcchhccCC
Q psy2891 288 NDSIKKIN----KSQLYIDETPSLNVIELRANSRRLSRQ---------------------CG-KIGVIIIDYLQLMSANS 341 (452)
Q Consensus 288 ~~a~~~l~----~~~l~i~~~~~~t~~~i~~~i~~~~~~---------------------~~-~~~~vvID~l~~i~~~~ 341 (452)
..++.++. ...-.+...+.-++......+...... .. ..-+||||.++.+....
T Consensus 280 ~~~L~~lv~EMerR~~ll~~~gvrni~~Yn~~~~~~~~~G~~~~dp~~~~~~~~~~~~~~~~lP~ivvVIDE~~~L~~~~ 359 (574)
T 2iut_A 280 ANALRWSVAEMERRYRLMAAMGVRNLAGFNRKVKDAEEAGTPLTDPLFRRESPDDEPPQLSTLPTIVVVVDEFADMMMIV 359 (574)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTCCCBCTTCCCCSTTCCCCBCCCCCEEEEEESCCTTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhcccccccccccccccccccccccCCCcEEEEEeCHHHHhhhh
Confidence 33333321 100000111122344443333221110 01 13489999998765422
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCc
Q psy2891 342 RGENRATEISEISRNLKGLAKEINCPILALSQLNR 376 (452)
Q Consensus 342 ~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r 376 (452)
. ..+...+..|-..++.+||.+|+.+|-..
T Consensus 360 ---~--~~~~~~L~~Iar~GRa~GIhLIlaTQRPs 389 (574)
T 2iut_A 360 ---G--KKVEELIARIAQKARAAGIHLILATQRPS 389 (574)
T ss_dssp ---C--HHHHHHHHHHHHHCTTTTEEEEEEESCCC
T ss_pred ---h--HHHHHHHHHHHHHHhhCCeEEEEEecCcc
Confidence 1 23456667777788899999999999643
No 186
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.06 E-value=0.034 Score=48.84 Aligned_cols=113 Identities=11% Similarity=0.086 Sum_probs=56.8
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHH--hCCCcEEEEeCCC-CHHHHHHHHHHHhC---CCCccccccCCCCcchHHHHH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAI--ENKLPVAIFSMEM-SGIQLAMRMLGSVG---KLDQHKLRTGRLSSDDWPRIN 288 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~--~~g~~vl~~s~E~-~~~~i~~R~~a~~~---~i~~~~i~~g~l~~~~~~~~~ 288 (452)
.-+++.+++|+|||..++-.+..... ..+.+++|+.--. -..++..++..... ++....+ .|..+..+
T Consensus 41 ~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~-~g~~~~~~----- 114 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMAT-TGGTNLRD----- 114 (206)
T ss_dssp CCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEE-CSSSCHHH-----
T ss_pred CCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEE-eCCccHHH-----
Confidence 44899999999999655544444321 1345788886432 12344444433222 2222211 22222111
Q ss_pred HHHHHHh-CCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhcc
Q psy2891 289 DSIKKIN-KSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 289 ~a~~~l~-~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~ 339 (452)
....+. +..+.+. |++.+...+..-.....++++||||-.+.+..
T Consensus 115 -~~~~~~~~~~i~v~-----T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~ 160 (206)
T 1vec_A 115 -DIMRLDDTVHVVIA-----TPGRILDLIKKGVAKVDHVQMIVLDEADKLLS 160 (206)
T ss_dssp -HHHHTTSCCSEEEE-----CHHHHHHHHHTTCSCCTTCCEEEEETHHHHTS
T ss_pred -HHHhcCCCCCEEEe-----CHHHHHHHHHcCCcCcccCCEEEEEChHHhHh
Confidence 111222 2345553 45566544432111112589999999998765
No 187
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.05 E-value=0.0038 Score=55.11 Aligned_cols=27 Identities=19% Similarity=0.375 Sum_probs=23.4
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
+.+|+++.|.|++|+||||++..++..
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999999887754
No 188
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=96.04 E-value=0.0078 Score=57.75 Aligned_cols=40 Identities=23% Similarity=0.313 Sum_probs=36.4
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS 254 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~ 254 (452)
..+.+++|.+|+|||+++.++|..+|. .|++|+.++++..
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~-~G~rVllvD~D~~ 58 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSK-VRSSVLLISTDPA 58 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHT-SSSCEEEEECCTT
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHH-CCCeEEEEECCCC
Confidence 358899999999999999999999985 7999999999976
No 189
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.03 E-value=0.004 Score=55.03 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=23.8
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
+.+|.+++|.|+||+||||++..++...
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 5689999999999999999998876543
No 190
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.01 E-value=0.0071 Score=57.54 Aligned_cols=43 Identities=19% Similarity=0.123 Sum_probs=33.6
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCC-CcEEEEeCCC
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENK-LPVAIFSMEM 253 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g-~~vl~~s~E~ 253 (452)
..+|+++.|.|++|+|||||+.-++.......| ..|.|++.+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~ 130 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDG 130 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGG
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCc
Confidence 688999999999999999999888766532223 4688887663
No 191
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=95.99 E-value=0.08 Score=52.61 Aligned_cols=112 Identities=13% Similarity=0.102 Sum_probs=66.8
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC-CCHHHHHHHHHHHhCCCCccc--cccCCCCcchHHHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME-MSGIQLAMRMLGSVGKLDQHK--LRTGRLSSDDWPRINDSIK 292 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E-~~~~~i~~R~~a~~~~i~~~~--i~~g~l~~~~~~~~~~a~~ 292 (452)
-+++++++|+|||..++.++.......+.+++++.-- .-..++..++.. ..+.+... ...|.....+...
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~-~~~~~~~~v~~~~g~~~~~~~~~------ 97 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRR-LFNLPPEKIVALTGEKSPEERSK------ 97 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHH-HBCSCGGGEEEECSCSCHHHHHH------
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHH-HhCcchhheEEeeCCcchhhhhh------
Confidence 4789999999999999888887755567889998754 233455555543 34543222 2234444333221
Q ss_pred HHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhcc
Q psy2891 293 KINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 293 ~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~ 339 (452)
.+....+.|. |.+.+...+..-.....++++||||-.+.+..
T Consensus 98 ~~~~~~ivv~-----T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~ 139 (494)
T 1wp9_A 98 AWARAKVIVA-----TPQTIENDLLAGRISLEDVSLIVFDEAHRAVG 139 (494)
T ss_dssp HHHHCSEEEE-----CHHHHHHHHHTTSCCTTSCSEEEEETGGGCST
T ss_pred hccCCCEEEe-----cHHHHHHHHhcCCcchhhceEEEEECCcccCC
Confidence 1234566664 45555554331100112589999999998864
No 192
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.98 E-value=0.11 Score=46.78 Aligned_cols=42 Identities=17% Similarity=0.194 Sum_probs=32.3
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS 254 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~ 254 (452)
...+|.+++|.|+||+||||++..++.... . |..|+. +.|-.
T Consensus 22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~-~-~~~~~~-~~~p~ 63 (229)
T 4eaq_A 22 SNAMSAFITFEGPEGSGKTTVINEVYHRLV-K-DYDVIM-TREPG 63 (229)
T ss_dssp CCCCCEEEEEECCTTSCHHHHHHHHHHHHT-T-TSCEEE-ECTTT
T ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHHHHh-c-CCCcee-ecCCC
Confidence 466899999999999999999999988764 3 566653 33433
No 193
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=95.98 E-value=0.037 Score=49.38 Aligned_cols=114 Identities=13% Similarity=0.090 Sum_probs=56.2
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHH--hCCCcEEEEeCC-CCHHHHHHHHHHHhC--CCCccccccCCCCcchHHHHHH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAI--ENKLPVAIFSME-MSGIQLAMRMLGSVG--KLDQHKLRTGRLSSDDWPRIND 289 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~--~~g~~vl~~s~E-~~~~~i~~R~~a~~~--~i~~~~i~~g~l~~~~~~~~~~ 289 (452)
.-+++.+++|+|||...+-.+..... ..+.+++|+.-- .-..++..++..... ++....+. |..+..+
T Consensus 52 ~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~-g~~~~~~------ 124 (224)
T 1qde_A 52 HDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACI-GGTSFVE------ 124 (224)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEEC-C------------
T ss_pred CCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEe-CCcchHH------
Confidence 34899999999999764433333321 134578888643 223445555443322 33322222 2211111
Q ss_pred HHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccC
Q psy2891 290 SIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSAN 340 (452)
Q Consensus 290 a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~ 340 (452)
....+.+.++.+. |++.+...+..-.....++++||||-.+.+...
T Consensus 125 ~~~~~~~~~iiv~-----Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~ 170 (224)
T 1qde_A 125 DAEGLRDAQIVVG-----TPGRVFDNIQRRRFRTDKIKMFILDEADEMLSS 170 (224)
T ss_dssp ----CTTCSEEEE-----CHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHT
T ss_pred HHhcCCCCCEEEE-----CHHHHHHHHHhCCcchhhCcEEEEcChhHHhhh
Confidence 1112333455554 455555444321111125899999999987653
No 194
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.98 E-value=0.0084 Score=52.11 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=29.2
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEe
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFS 250 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s 250 (452)
+++|.|+||+||||++..++.... ..|.++.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~-~~g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD-NQGINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH-TTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEEE
Confidence 689999999999999999998874 3577788884
No 195
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.97 E-value=0.01 Score=50.98 Aligned_cols=38 Identities=16% Similarity=0.060 Sum_probs=32.6
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS 254 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~ 254 (452)
++.|+|++|+||||++..++..+. ..|.+|..+..+..
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~-~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAV-REGWRVGTVKHHGH 43 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEECCC-
T ss_pred EEEEECCCCCCHHHHHHHHHHhhH-hcCCeeeEEEeCCC
Confidence 789999999999999999998875 46899999987754
No 196
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.97 E-value=0.011 Score=61.64 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=28.0
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+. -+.+|+++.|.|++|+|||||+.-++-.
T Consensus 107 ~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 107 VLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred eeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCC
Confidence 355554 5799999999999999999999877653
No 197
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.96 E-value=0.06 Score=47.86 Aligned_cols=112 Identities=15% Similarity=0.112 Sum_probs=59.4
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHh--CCCcEEEEeCC-CCHHHHHHHHHHHhC---CCCccccccCCCCcchHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIE--NKLPVAIFSME-MSGIQLAMRMLGSVG---KLDQHKLRTGRLSSDDWPRIND 289 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~--~g~~vl~~s~E-~~~~~i~~R~~a~~~---~i~~~~i~~g~l~~~~~~~~~~ 289 (452)
-+++.+++|+|||..++-.+...... .+.+++|+.-- .-..++..++..... ++....+ .|..+..++.
T Consensus 53 ~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~-~g~~~~~~~~---- 127 (220)
T 1t6n_A 53 DVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVF-FGGLSIKKDE---- 127 (220)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEE-SCCSCHHHHH----
T ss_pred CEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEE-eCCCChHHHH----
Confidence 48899999999998776666655322 23478888643 223445444433221 3332222 2333322221
Q ss_pred HHHHHh-C-CCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhcc
Q psy2891 290 SIKKIN-K-SQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 290 a~~~l~-~-~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~ 339 (452)
+.+. . ..+.+. |++.+...++.-.....++++||||-.+.+..
T Consensus 128 --~~~~~~~~~i~v~-----T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~ 172 (220)
T 1t6n_A 128 --EVLKKNCPHIVVG-----TPGRILALARNKSLNLKHIKHFILDECDKMLE 172 (220)
T ss_dssp --HHHHHSCCSEEEE-----CHHHHHHHHHTTSSCCTTCCEEEEESHHHHHS
T ss_pred --HHHhcCCCCEEEe-----CHHHHHHHHHhCCCCcccCCEEEEcCHHHHhc
Confidence 1122 1 245553 45556554432111112589999999998754
No 198
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=95.96 E-value=0.0077 Score=54.46 Aligned_cols=38 Identities=21% Similarity=0.317 Sum_probs=33.2
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS 254 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~ 254 (452)
+.+.++.+|+|||+++.++|..++. .|.+|+++.++..
T Consensus 5 i~v~s~kgGvGKTt~a~~LA~~la~-~g~~VlliD~D~~ 42 (237)
T 1g3q_A 5 ISIVSGKGGTGKTTVTANLSVALGD-RGRKVLAVDGDLT 42 (237)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCTT
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHh-cCCeEEEEeCCCC
Confidence 5566788999999999999999985 6999999999863
No 199
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.94 E-value=0.0085 Score=57.05 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=36.1
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
+..-.++.|+|--|+||||++.|+|..+|. .|++|+.+.++
T Consensus 45 i~~aKVIAIaGKGGVGKTTtavNLA~aLA~-~GkkVllID~D 85 (314)
T 3fwy_A 45 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSI-LGKRVLQIGCD 85 (314)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEEES
T ss_pred CCCceEEEEECCCccCHHHHHHHHHHHHHH-CCCeEEEEecC
Confidence 445569999999999999999999999985 79999999998
No 200
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=95.92 E-value=0.04 Score=55.17 Aligned_cols=65 Identities=14% Similarity=0.254 Sum_probs=50.5
Q ss_pred ccccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHH
Q psy2891 194 VTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAM 260 (452)
Q Consensus 194 ~~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~ 260 (452)
...+.||++.+|-+. .+-+|+=..|.|.+|+|||+++++.+.+.. ..+..|+|.-.-...+++.+
T Consensus 143 ~epl~TGikaID~l~-PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~-~~dv~~V~~~IGeR~~ev~e 207 (513)
T 3oaa_A 143 DQPVQTGYKAVDSMI-PIGRGQRELIIGDRQTGKTALAIDAIINQR-DSGIKCIYVAIGQKASTISN 207 (513)
T ss_dssp CCBCCCSCHHHHHHS-CCBTTCBCEEEESSSSSHHHHHHHHHHTTS-SSSCEEEEEEESCCHHHHHH
T ss_pred Ccccccceeeecccc-ccccCCEEEeecCCCCCcchHHHHHHHhhc-cCCceEEEEEecCChHHHHH
Confidence 356889999999874 588899999999999999999887766653 34555778877777665543
No 201
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.92 E-value=0.0047 Score=55.01 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=23.8
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
++|.+++|.||+|+||||++..++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 579999999999999999999887643
No 202
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.90 E-value=0.0083 Score=55.53 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=33.3
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEE
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIF 249 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~ 249 (452)
.|+.+. +++|+++.|.|++|+||||++.-++..........|.+.
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~ 60 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITI 60 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEc
Confidence 445444 899999999999999999999888876543313455554
No 203
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=95.88 E-value=0.11 Score=53.57 Aligned_cols=148 Identities=16% Similarity=0.070 Sum_probs=74.1
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhC------CCcEEEEeCCC-CHHHHHHHHHHHh---CCC---CccccccCCC
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIEN------KLPVAIFSMEM-SGIQLAMRMLGSV---GKL---DQHKLRTGRL 279 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~------g~~vl~~s~E~-~~~~i~~R~~a~~---~~i---~~~~i~~g~l 279 (452)
.|.-+++.|++|+|||...+-.++...... +.+++|++--- -..|+..++.... .++ ....+..|
T Consensus 59 ~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg-- 136 (579)
T 3sqw_A 59 EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGG-- 136 (579)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTT--
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECC--
Confidence 466789999999999974443333333222 34788886432 2234444443321 111 11112222
Q ss_pred CcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHH-HcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHH
Q psy2891 280 SSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSR-QCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLK 358 (452)
Q Consensus 280 ~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~-~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk 358 (452)
.++......... .+..+.|. |++.+...+.+... ....+++||||-.+.+.... ....+..+...+.
T Consensus 137 --~~~~~~~~~l~~-~~~~IlV~-----Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~g----f~~~~~~i~~~l~ 204 (579)
T 3sqw_A 137 --TDFRAAMNKMNK-LRPNIVIA-----TPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIG----FRDDLETISGILN 204 (579)
T ss_dssp --SCHHHHHHHHHH-HCCSEEEE-----CHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTT----THHHHHHHHHHHH
T ss_pred --ccHHHHHHHHhc-CCCCEEEE-----CHHHHHHHHHhccccccccCCEEEEEChHHhhcCC----CHHHHHHHHHHhh
Confidence 122211111111 13456554 45666666655421 22358999999999887532 2334445544444
Q ss_pred HHHHH--hCCcEEEEecC
Q psy2891 359 GLAKE--INCPILALSQL 374 (452)
Q Consensus 359 ~lA~~--~~i~vi~l~ql 374 (452)
..... .++++++++-.
T Consensus 205 ~~~~~~~~~~~~l~~SAT 222 (579)
T 3sqw_A 205 EKNSKSADNIKTLLFSAT 222 (579)
T ss_dssp HHCSSCTTCCEEEEEESS
T ss_pred hhhcccccCceEEEEecc
Confidence 33221 15677776643
No 204
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=95.88 E-value=0.021 Score=52.44 Aligned_cols=130 Identities=10% Similarity=0.078 Sum_probs=71.2
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEe-----C--CCCHHHHHHHHHHHhCCCCcc-c-c-ccCCCCcchHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFS-----M--EMSGIQLAMRMLGSVGKLDQH-K-L-RTGRLSSDDWP 285 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s-----~--E~~~~~i~~R~~a~~~~i~~~-~-i-~~g~l~~~~~~ 285 (452)
+++-+-.+|+|||++++.++..+. ++|.+|.||- . +...-+... ..++++.. . + ...-+++.
T Consensus 29 i~Itgt~t~vGKT~vt~gL~~~l~-~~G~~V~~fKPv~~g~~~~~~D~~~~~----~~~g~~~~~~~~~~~~p~sP~--- 100 (251)
T 3fgn_A 29 LVVTGTGTGVGKTVVCAALASAAR-QAGIDVAVCKPVQTGTARGDDDLAEVG----RLAGVTQLAGLARYPQPMAPA--- 100 (251)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHHH-HTTCCEEEEEEEECCGGGTCCHHHHHH----HHHCCCEEEEEEECSSSSCHH---
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHH-HCCCeEEEEeeeecCCCCCCHHHHHHH----HHcCCCCCCCCeeECCCCChH---
Confidence 666666789999999999999886 5799999995 2 112222222 22343311 0 0 00011110
Q ss_pred HHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhC
Q psy2891 286 RINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEIN 365 (452)
Q Consensus 286 ~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~ 365 (452)
+.. .+.+ ...+..+.+.+.++++.. +.|+||||.-.-+..+.. ... ...-.+|+.++
T Consensus 101 -~aa---~~~~-------~~~~~~~~i~~~~~~l~~---~~D~vlIEGagGl~~pl~-~~~--------~~~adla~~l~ 157 (251)
T 3fgn_A 101 -AAA---EHAG-------MALPARDQIVRLIADLDR---PGRLTLVEGAGGLLVELA-EPG--------VTLRDVAVDVA 157 (251)
T ss_dssp -HHH---HHTT-------CCCCCHHHHHHHHHTTCC---TTCEEEEECSSSTTCEEE-TTT--------EEHHHHHHHTT
T ss_pred -HHH---HHcC-------CCCCCHHHHHHHHHHHHh---cCCEEEEECCCCCcCCcC-ccc--------chHHHHHHHcC
Confidence 000 0110 113456777766655422 478999998765443210 100 01234677888
Q ss_pred CcEEEEecCCc
Q psy2891 366 CPILALSQLNR 376 (452)
Q Consensus 366 i~vi~l~ql~r 376 (452)
.|||++.-...
T Consensus 158 ~pVILV~~~~~ 168 (251)
T 3fgn_A 158 AAALVVVTADL 168 (251)
T ss_dssp CEEEEEECSST
T ss_pred CCEEEEEcCCC
Confidence 99998886654
No 205
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=95.88 E-value=0.0079 Score=57.81 Aligned_cols=38 Identities=26% Similarity=0.373 Sum_probs=35.1
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM 253 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~ 253 (452)
.+++++|.+|+||||++.++|..+|. .|++|+.++++-
T Consensus 17 ~i~~~sgkGGvGKTt~a~~lA~~la~-~g~~vllid~D~ 54 (334)
T 3iqw_A 17 RWIFVGGKGGVGKTTTSCSLAIQLAK-VRRSVLLLSTDP 54 (334)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHTT-SSSCEEEEECCS
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHh-CCCcEEEEECCC
Confidence 58899999999999999999999985 799999999994
No 206
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=95.88 E-value=0.053 Score=49.95 Aligned_cols=114 Identities=13% Similarity=0.055 Sum_probs=59.7
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHh------CCCcEEEEeCC-CCHHHHHHHHHHHhC--CCCccccccCCCCc-chH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIE------NKLPVAIFSME-MSGIQLAMRMLGSVG--KLDQHKLRTGRLSS-DDW 284 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~------~g~~vl~~s~E-~~~~~i~~R~~a~~~--~i~~~~i~~g~l~~-~~~ 284 (452)
.-+++.|++|+|||..++-.+.....+ .+.+++|+.-- .-..++..++..... ++....+. |.... .++
T Consensus 92 ~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~ 170 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIM-GGSNRSAEA 170 (262)
T ss_dssp CCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEEC-SSSCHHHHH
T ss_pred CcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEE-CCCCHHHHH
Confidence 347899999999997655444443332 46778888642 223445555443322 22222222 22221 111
Q ss_pred HHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHH-HHcCCccEEEEcCcchhccC
Q psy2891 285 PRINDSIKKINKSQLYIDETPSLNVIELRANSRRLS-RQCGKIGVIIIDYLQLMSAN 340 (452)
Q Consensus 285 ~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~-~~~~~~~~vvID~l~~i~~~ 340 (452)
..+ ..+..+.|. |++.+...+.... ....++++||||-.+.+...
T Consensus 171 ~~~------~~~~~Iiv~-----Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~ 216 (262)
T 3ly5_A 171 QKL------GNGINIIVA-----TPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDV 216 (262)
T ss_dssp HHH------HHCCSEEEE-----CHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHT
T ss_pred HHh------cCCCCEEEE-----cHHHHHHHHHccCCcccccCCEEEEcChHHHhhh
Confidence 111 123455554 4566655444321 11125899999999987753
No 207
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.88 E-value=0.0083 Score=55.49 Aligned_cols=38 Identities=11% Similarity=0.243 Sum_probs=32.9
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS 254 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~ 254 (452)
++.|.|..|+||||++.++|..++. .|++|+.+.++..
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la~-~G~~VlliD~D~q 40 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHA-MGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHT-TTCCEEEEEECTT
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHH-CCCcEEEEcCCCC
Confidence 3455799999999999999999984 7999999999853
No 208
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.87 E-value=0.011 Score=49.18 Aligned_cols=34 Identities=9% Similarity=0.129 Sum_probs=25.1
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
-++|.|+||+|||++|..++.... ..+.+++ +++
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~v-~~~ 59 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFGR-NAQGEFV-YRE 59 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSST-TTTSCCE-EEE
T ss_pred CEEEECCCCCCHHHHHHHHHHhCC-ccCCCEE-EEC
Confidence 489999999999999998876543 2355555 544
No 209
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.87 E-value=0.053 Score=48.10 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=52.7
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCC--Cc-cccccCCCCcchHHHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKL--DQ-HKLRTGRLSSDDWPRINDSIK 292 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i--~~-~~i~~g~l~~~~~~~~~~a~~ 292 (452)
.++|.|+||+||+|.|..++... | +.++|. .++.+..+...+.+ .. ..+..|.+-++++- +.-..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~----g--~~~ist----GdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv-~~lv~~ 70 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK----G--FVHIST----GDILREAVQKGTPLGKKAKEYMERGELVPDDLI-IALIEE 70 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH----C--CEEEEH----HHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----C--CeEEcH----HHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHH-HHHHHH
Confidence 46889999999999999888654 3 456664 23433332221110 00 11234665544431 111122
Q ss_pred HHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcC-CccEEE
Q psy2891 293 KINKSQLYIDETPSLNVIELRANSRRLSRQCG-KIGVII 330 (452)
Q Consensus 293 ~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~-~~~~vv 330 (452)
.+....-|+.|.-+-|..+....-..+.. .+ .++.||
T Consensus 71 ~l~~~~~~ilDGfPRt~~Qa~~l~~~l~~-~~~~~~~vi 108 (206)
T 3sr0_A 71 VFPKHGNVIFDGFPRTVKQAEALDEMLEK-KGLKVDHVL 108 (206)
T ss_dssp HCCSSSCEEEESCCCSHHHHHHHHHHHHH-TTCCCCEEE
T ss_pred hhccCCceEecCCchhHHHHHHHHhhHHH-hccccceee
Confidence 34444456666555677666554333332 22 355544
No 210
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.85 E-value=0.0089 Score=51.90 Aligned_cols=37 Identities=19% Similarity=0.364 Sum_probs=28.9
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
|.+++|.|+||+||||++..++.... ..|.+.-+++.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~-~~g~~~~~i~~ 39 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR-KEGVNYKMVSF 39 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH-TTTCCCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCcceEEEeh
Confidence 56899999999999999999998764 34544556653
No 211
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=95.85 E-value=0.019 Score=51.96 Aligned_cols=113 Identities=12% Similarity=0.005 Sum_probs=54.8
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHh--CCCcEEEEeCC-CCHHHHHHHHHHHhC--CCCccccccCCCCcchHHHHHH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIE--NKLPVAIFSME-MSGIQLAMRMLGSVG--KLDQHKLRTGRLSSDDWPRIND 289 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~--~g~~vl~~s~E-~~~~~i~~R~~a~~~--~i~~~~i~~g~l~~~~~~~~~~ 289 (452)
.-+++.|++|+|||...+-.+...... .+.+++|+.-- .-..++..++..... ++....+..|.-...++.
T Consensus 68 ~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---- 143 (237)
T 3bor_A 68 YDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQ---- 143 (237)
T ss_dssp CCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------
T ss_pred CCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHH----
Confidence 348899999999997655555444221 35678888643 123444444433221 222222222211111111
Q ss_pred HHHHHhC--CCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhcc
Q psy2891 290 SIKKINK--SQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 290 a~~~l~~--~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~ 339 (452)
.+.. ..+.+. |++.+...+..-.....++++||||-.+.+..
T Consensus 144 ---~l~~~~~~Ilv~-----Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~ 187 (237)
T 3bor_A 144 ---KLQAEAPHIVVG-----TPGRVFDMLNRRYLSPKWIKMFVLDEADEMLS 187 (237)
T ss_dssp -------CCCSEEEE-----CHHHHHHHHHTTSSCSTTCCEEEEESHHHHHH
T ss_pred ---HHhcCCCCEEEE-----CHHHHHHHHHhCCcCcccCcEEEECCchHhhc
Confidence 1211 244443 45555554432111112589999999998764
No 212
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=95.84 E-value=0.009 Score=55.17 Aligned_cols=39 Identities=21% Similarity=0.419 Sum_probs=34.3
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSG 255 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~ 255 (452)
+.+..+..|+||||++.++|..++. .|.+|+++.++...
T Consensus 21 I~v~s~kGGvGKTT~a~nLA~~la~-~G~~VlliD~D~~~ 59 (262)
T 2ph1_A 21 IAVMSGKGGVGKSTVTALLAVHYAR-QGKKVGILDADFLG 59 (262)
T ss_dssp EEEECSSSCTTHHHHHHHHHHHHHH-TTCCEEEEECCSSC
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCCC
Confidence 6677889999999999999999985 69999999998654
No 213
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=95.84 E-value=0.009 Score=54.79 Aligned_cols=37 Identities=19% Similarity=0.386 Sum_probs=33.2
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM 253 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~ 253 (452)
+.+.++..|+|||+++.++|..++. .|.+|+++.++.
T Consensus 5 i~v~s~kgGvGKTt~a~~LA~~la~-~g~~VlliD~D~ 41 (260)
T 3q9l_A 5 IVVTSGKGGVGKTTSSAAIATGLAQ-KGKKTVVIDFAI 41 (260)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCC
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHh-CCCcEEEEECCC
Confidence 5566788999999999999999985 799999999986
No 214
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.84 E-value=0.0054 Score=54.34 Aligned_cols=29 Identities=14% Similarity=0.222 Sum_probs=25.0
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.+.+|.+++|+|+||+||||++..++...
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 46789999999999999999999887654
No 215
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.83 E-value=0.014 Score=50.38 Aligned_cols=42 Identities=12% Similarity=0.102 Sum_probs=33.3
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS 254 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~ 254 (452)
..-.+++|+|++|+|||||+..++.... ..|.+|..+..+..
T Consensus 4 ~~~~~i~i~G~sGsGKTTl~~~l~~~l~-~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 4 TMIPLLAFAAWSGTGKTTLLKKLIPALC-ARGIRPGLIKHTHH 45 (174)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEEEECCC
T ss_pred CcceEEEEEeCCCCCHHHHHHHHHHhcc-ccCCceeEEeeCCC
Confidence 3345899999999999999999988764 46788888876543
No 216
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=95.83 E-value=0.059 Score=62.70 Aligned_cols=144 Identities=17% Similarity=0.194 Sum_probs=82.9
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHh-CCCcEEEEeCCCC-HHHHHHHHHHHh---CCCCccccccCCCCcchHHH
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIE-NKLPVAIFSMEMS-GIQLAMRMLGSV---GKLDQHKLRTGRLSSDDWPR 286 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~-~g~~vl~~s~E~~-~~~i~~R~~a~~---~~i~~~~i~~g~l~~~~~~~ 286 (452)
..++-++++||+|+|||..+.-.+++...+ .+.+++|++---. ..+....+.... .|+.... ..|..+. +
T Consensus 940 ~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~-ltGd~~~-~--- 1014 (1724)
T 4f92_B 940 NSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVL-LTGETST-D--- 1014 (1724)
T ss_dssp SCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEE-CCSCHHH-H---
T ss_pred cCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEE-EECCCCc-c---
Confidence 456779999999999998776555555433 4668999865321 123333333322 2332221 1232211 1
Q ss_pred HHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHH--cCCccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHH-
Q psy2891 287 INDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQ--CGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKE- 363 (452)
Q Consensus 287 ~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~--~~~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~- 363 (452)
...+.+..+.|. |++.+...++++... ..++++||||-++.+.. .+...+..+...++.++..
T Consensus 1015 ----~~~~~~~~IiV~-----TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d-----~rg~~le~il~rl~~i~~~~ 1080 (1724)
T 4f92_B 1015 ----LKLLGKGNIIIS-----TPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG-----ENGPVLEVICSRMRYISSQI 1080 (1724)
T ss_dssp ----HHHHHHCSEEEE-----CHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS-----TTHHHHHHHHHHHHHHHHTT
T ss_pred ----hhhcCCCCEEEE-----CHHHHHHHHhCcccccccceeeEEEeechhhcCC-----CCCccHHHHHHHHHHHHhhc
Confidence 122344567764 556655544432211 11589999999998864 2344566777788877764
Q ss_pred -hCCcEEEEecC
Q psy2891 364 -INCPILALSQL 374 (452)
Q Consensus 364 -~~i~vi~l~ql 374 (452)
.++.+|++|-.
T Consensus 1081 ~~~~riI~lSAT 1092 (1724)
T 4f92_B 1081 ERPIRIVALSSS 1092 (1724)
T ss_dssp SSCCEEEEEESC
T ss_pred CCCceEEEEeCC
Confidence 36778887743
No 217
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=95.83 E-value=0.0097 Score=55.78 Aligned_cols=38 Identities=18% Similarity=0.206 Sum_probs=33.1
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS 254 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~ 254 (452)
++.|.|..|+||||++.++|..++. .|++|+.+.++..
T Consensus 4 vIavs~KGGvGKTT~a~nLA~~La~-~G~rVlliD~D~q 41 (289)
T 2afh_E 4 QCAIYGKGGIGKSTTTQNLVAALAE-MGKKVMIVGCDPK 41 (289)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH-TTCCEEEEEECSS
T ss_pred EEEEeCCCcCcHHHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence 4555899999999999999999985 6999999999854
No 218
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.83 E-value=0.01 Score=59.43 Aligned_cols=64 Identities=16% Similarity=0.123 Sum_probs=50.0
Q ss_pred ccccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHH
Q psy2891 194 VTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQL 258 (452)
Q Consensus 194 ~~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i 258 (452)
...+.||++.+|-+. .+.+|+=..|.|++|+|||+++.+++.+.+..++.-++|.-..+..+++
T Consensus 146 ~e~l~TGirvID~l~-pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~iGER~rEv 209 (498)
T 1fx0_B 146 LSIFETGIKVVNLLA-PYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREG 209 (498)
T ss_dssp CCCCCCSCTTHHHHS-CCCTTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEEESCCSHHH
T ss_pred ccccccceeEeeeec-ccccCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEEcccCcHHH
Confidence 346899999999864 5889999999999999999999999999865444556666554444443
No 219
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.81 E-value=0.0063 Score=53.70 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=23.6
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
..+|.+++|.|+||+||||++..++...
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3578999999999999999999887654
No 220
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.81 E-value=0.035 Score=56.89 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=27.9
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGE 236 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~ 236 (452)
.|+.+. -+.+|+++.|.|++|+|||||+.-++-
T Consensus 37 ~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 37 VLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred cccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 455555 689999999999999999999887764
No 221
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.81 E-value=0.0053 Score=55.27 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=22.8
Q ss_pred CCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 209 SGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 209 gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.-+++|++++|.||+|+|||||+.-++..
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 35889999999999999999998877654
No 222
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=95.78 E-value=0.0056 Score=55.77 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=32.2
Q ss_pred EEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy2891 218 IVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS 254 (452)
Q Consensus 218 ~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~ 254 (452)
.|+|.+|+||||++.++|..++. .|.+|+.+.++..
T Consensus 4 ~vs~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~ 39 (254)
T 3kjh_A 4 AVAGKGGVGKTTVAAGLIKIMAS-DYDKIYAVDGDPD 39 (254)
T ss_dssp EEECSSSHHHHHHHHHHHHHHTT-TCSCEEEEEECTT
T ss_pred EEecCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence 34899999999999999999985 6899999999874
No 223
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=95.76 E-value=0.025 Score=56.81 Aligned_cols=64 Identities=17% Similarity=0.228 Sum_probs=49.9
Q ss_pred cccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHH
Q psy2891 195 TGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAM 260 (452)
Q Consensus 195 ~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~ 260 (452)
..+.||++.+|-+. .+-+|+=..|.|++|+|||+++++...+.+ ..+..|+|.-.....+++.+
T Consensus 157 epl~TGiraID~l~-PigrGQR~~I~g~~g~GKT~Lal~~I~~~~-~~dv~~V~~~IGeR~~Ev~e 220 (515)
T 2r9v_A 157 TPLQTGIKAIDSMI-PIGRGQRELIIGDRQTGKTAIAIDTIINQK-GQGVYCIYVAIGQKKSAIAR 220 (515)
T ss_dssp SEECCSCHHHHHHS-CEETTCBEEEEEETTSSHHHHHHHHHHTTT-TTTEEEEEEEESCCHHHHHH
T ss_pred cchhcCcccccccc-ccccCCEEEEEcCCCCCccHHHHHHHHHhh-cCCcEEEEEEcCCCcHHHHH
Confidence 46889999999864 578899999999999999999887776664 34445678777767666543
No 224
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.75 E-value=0.0058 Score=54.29 Aligned_cols=28 Identities=18% Similarity=0.408 Sum_probs=22.9
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
-+.+|+++.|.|++|+||||++.-++--
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4889999999999999999999887754
No 225
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=95.74 E-value=0.028 Score=58.27 Aligned_cols=50 Identities=14% Similarity=0.067 Sum_probs=34.3
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHH---HHhCCCcEEEEeCCCC-HHHHHHHH
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHI---AIENKLPVAIFSMEMS-GIQLAMRM 262 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~---a~~~g~~vl~~s~E~~-~~~i~~R~ 262 (452)
.+.+++|.|++|+|||+++.+++... ...-...|+|++.... ...+...+
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l 199 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKL 199 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHH
T ss_pred CCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHH
Confidence 35699999999999999999998653 2222235888876543 34444444
No 226
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=95.74 E-value=0.013 Score=56.60 Aligned_cols=40 Identities=23% Similarity=0.333 Sum_probs=36.0
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHH-hCCCcEEEEeCCC
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAI-ENKLPVAIFSMEM 253 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~-~~g~~vl~~s~E~ 253 (452)
..++++.|.+|+||||++.++|..+|. ..|.+|+.++++-
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~ 58 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDP 58 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 369999999999999999999999983 4799999999993
No 227
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.73 E-value=0.049 Score=59.31 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=25.1
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.+.+|++++|.||.|+||||++.+++...
T Consensus 658 ~~~~g~i~~ItGpNGsGKSTlLr~ial~~ 686 (934)
T 3thx_A 658 EKDKQMFHIITGPNMGGKSTYIRQTGVIV 686 (934)
T ss_dssp ETTTBCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ecCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999986544
No 228
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.73 E-value=0.01 Score=57.62 Aligned_cols=41 Identities=24% Similarity=0.413 Sum_probs=33.4
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGI 256 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~ 256 (452)
-.++|+|.||+|||||+.+++...+ ..|.+|+.++.+....
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~-~~g~kV~vi~~Dp~~~ 120 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLI-ERGHRVAVLAVDPSST 120 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-hCCCceEEEecCCCCC
Confidence 3789999999999999999999886 4789999999885544
No 229
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.71 E-value=0.0077 Score=53.31 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=26.9
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHH----hCC-CcEEEEeCC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAI----ENK-LPVAIFSME 252 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~----~~g-~~vl~~s~E 252 (452)
++++.|+||+|||++|..++...+. +.| .+|.|..++
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~ 48 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIK 48 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCC
Confidence 7899999999999999888766542 356 444444433
No 230
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.70 E-value=0.011 Score=57.40 Aligned_cols=37 Identities=16% Similarity=0.198 Sum_probs=28.7
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEE
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVA 247 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl 247 (452)
..+|.+++|.|++|+||||++..++.......+..++
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~ 156 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHIL 156 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEE
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEE
Confidence 3678899999999999999999887766443344453
No 231
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.70 E-value=0.0094 Score=49.55 Aligned_cols=32 Identities=6% Similarity=-0.015 Sum_probs=23.1
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
-++|.|+||+|||++|..++... + +++++++.
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~----~-~~~~~~~~ 60 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNG----T-PWVSPARV 60 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTT----S-CEECCSST
T ss_pred cEEEECCCCccHHHHHHHHHHhC----C-CeEEechh
Confidence 38899999999999988766432 2 56555543
No 232
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=95.70 E-value=0.097 Score=53.31 Aligned_cols=114 Identities=19% Similarity=0.050 Sum_probs=65.3
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHhC----CCcEEEEeCC-CCHHHHHHHHHHHh--CCCCccccccCCCCcchHHHH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIEN----KLPVAIFSME-MSGIQLAMRMLGSV--GKLDQHKLRTGRLSSDDWPRI 287 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~~----g~~vl~~s~E-~~~~~i~~R~~a~~--~~i~~~~i~~g~l~~~~~~~~ 287 (452)
.-+++++++|+|||..++-.+....... +.+|+|++-- .-..++...+.... .++....+..+.-....+..+
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 99 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHI 99 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHH
Confidence 3489999999999988777777765432 6789998754 23344555544332 255544333332222233332
Q ss_pred HHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHH-HcCCccEEEEcCcchhcc
Q psy2891 288 NDSIKKINKSQLYIDETPSLNVIELRANSRRLSR-QCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 288 ~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~-~~~~~~~vvID~l~~i~~ 339 (452)
. .+..+.|. |++.+...+..-.. ...++++||||-.+.+..
T Consensus 100 ~------~~~~i~v~-----T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~ 141 (555)
T 3tbk_A 100 I------EDNDIIIL-----TPQILVNNLNNGAIPSLSVFTLMIFDECHNTSK 141 (555)
T ss_dssp H------HHCSEEEE-----CHHHHHHHHHTSSSCCGGGCSEEEETTGGGCST
T ss_pred h------cCCCEEEE-----CHHHHHHHHhcCcccccccCCEEEEECccccCC
Confidence 2 23456664 45555554432100 111479999999998864
No 233
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.69 E-value=0.031 Score=52.81 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=21.1
Q ss_pred EEEEeCCCCChhHHHHHHHHHHH
Q psy2891 217 IIVAGRPSMGKTAFSLNIGEHIA 239 (452)
Q Consensus 217 ~~i~g~pg~GKT~~~l~ia~~~a 239 (452)
++|.|+||+|||+++..++..+.
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhc
Confidence 89999999999999999998763
No 234
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.67 E-value=0.0069 Score=51.49 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=26.1
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
-+++|+++.|.|+.|+|||||+.-++-..
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999999999887755
No 235
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=95.67 E-value=0.017 Score=57.06 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=30.6
Q ss_pred cCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHH
Q psy2891 199 TGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGE 236 (452)
Q Consensus 199 tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~ 236 (452)
.+|..|+.+.--+.+| +++|.|++|+|||+++--+..
T Consensus 46 ~nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 46 RNLATITQLELELGGG-FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp EEETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHH
T ss_pred ccccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHH
Confidence 4677788775568999 999999999999999876644
No 236
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.67 E-value=0.017 Score=51.16 Aligned_cols=39 Identities=23% Similarity=0.266 Sum_probs=31.2
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEe
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFS 250 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s 250 (452)
..+|.+++|.|.||+||||++..++...-. .+..+..+.
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~-~~~~~~~~~ 45 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLKN-NNVEVKHLY 45 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHHH-cCCcEEEEe
Confidence 456789999999999999999999987643 467775444
No 237
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=95.63 E-value=0.072 Score=48.59 Aligned_cols=115 Identities=13% Similarity=0.055 Sum_probs=60.2
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhC--CCcEEEEeCCC-CHHHHHHHHHHHh--CCCCccccccCCCCcchHHHHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIEN--KLPVAIFSMEM-SGIQLAMRMLGSV--GKLDQHKLRTGRLSSDDWPRIN 288 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~--g~~vl~~s~E~-~~~~i~~R~~a~~--~~i~~~~i~~g~l~~~~~~~~~ 288 (452)
|.-+++.|++|+|||...+-.+....... +.+++|+.--- -..++..++.... .++....+. |.....+.
T Consensus 80 ~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~-g~~~~~~~---- 154 (249)
T 3ber_A 80 GRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIV-GGIDSMSQ---- 154 (249)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEEC-TTSCHHHH----
T ss_pred CCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEE-CCCChHHH----
Confidence 34588999999999976555555443332 34688886421 2234444443322 244333222 22222111
Q ss_pred HHHHHH-hCCCeEEEcCCCCCHHHHHHHHHHHHH-HcCCccEEEEcCcchhccC
Q psy2891 289 DSIKKI-NKSQLYIDETPSLNVIELRANSRRLSR-QCGKIGVIIIDYLQLMSAN 340 (452)
Q Consensus 289 ~a~~~l-~~~~l~i~~~~~~t~~~i~~~i~~~~~-~~~~~~~vvID~l~~i~~~ 340 (452)
...+ .+..+.+. |++.+...+..... ...++++||||-.+.+...
T Consensus 155 --~~~~~~~~~I~v~-----Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~ 201 (249)
T 3ber_A 155 --SLALAKKPHIIIA-----TPGRLIDHLENTKGFNLRALKYLVMDEADRILNM 201 (249)
T ss_dssp --HHHHHTCCSEEEE-----CHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHT
T ss_pred --HHHhcCCCCEEEE-----CHHHHHHHHHcCCCcCccccCEEEEcChhhhhcc
Confidence 1112 23455554 45566555443211 1124889999999977653
No 238
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.62 E-value=0.015 Score=56.45 Aligned_cols=63 Identities=16% Similarity=0.136 Sum_probs=50.6
Q ss_pred ccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhC-CCcEEEEeCCCCHHHHH
Q psy2891 196 GISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIEN-KLPVAIFSMEMSGIQLA 259 (452)
Q Consensus 196 ~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~-g~~vl~~s~E~~~~~i~ 259 (452)
.+.||+..+|-+. .+.+|+=..|.|++|+|||+++.+++.+++.+. +..|+|+-.....+++.
T Consensus 158 ~~~tGiraID~l~-PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGER~~EV~ 221 (427)
T 3l0o_A 158 PKIYSTRLIDLFA-PIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVT 221 (427)
T ss_dssp TTCHHHHHHHHHS-CCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSCCHHHHS
T ss_pred chhccchhhhhcc-cccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEeccCcchHH
Confidence 5678999999864 588899999999999999999999999887543 44577877777766554
No 239
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=95.62 E-value=0.0092 Score=58.32 Aligned_cols=36 Identities=14% Similarity=0.092 Sum_probs=31.8
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
+.+.+|..|+||||++.++|..+|. .|.+|++++++
T Consensus 146 Iav~s~KGGvGKTT~a~nLA~~La~-~g~rVlliD~D 181 (373)
T 3fkq_A 146 VIFTSPCGGVGTSTVAAACAIAHAN-MGKKVFYLNIE 181 (373)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHH-HTCCEEEEECC
T ss_pred EEEECCCCCChHHHHHHHHHHHHHh-CCCCEEEEECC
Confidence 4555579999999999999999986 58999999999
No 240
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.61 E-value=0.0069 Score=52.01 Aligned_cols=27 Identities=15% Similarity=0.390 Sum_probs=23.4
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.+|.+++|.|+||+||||++..++...
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 568899999999999999999887643
No 241
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.60 E-value=0.017 Score=51.15 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=31.0
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEe
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFS 250 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s 250 (452)
.+|-+++|.|+||+||||++..++...-. .+..|..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~-~~~~v~~~~ 44 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCA-AGHRAELLR 44 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEee
Confidence 46779999999999999999999988743 577775543
No 242
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.60 E-value=0.0084 Score=51.55 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=26.0
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
|.+++|.|+||+||||++..++... +.+.+.++.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l----~~~~~~~~~ 36 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL----PEPWLAFGV 36 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS----SSCEEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc----CCCeEEecc
Confidence 5689999999999999999887653 344444443
No 243
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.59 E-value=0.012 Score=56.60 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=35.6
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM 253 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~ 253 (452)
-+.+|.++.|.|+||+|||||+..++.... ..+.+|.+++.+.
T Consensus 51 ~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~-~~~g~v~i~~~d~ 93 (337)
T 2qm8_A 51 QTGRAIRVGITGVPGVGKSTTIDALGSLLT-AAGHKVAVLAVDP 93 (337)
T ss_dssp GCCCSEEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEEEECG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHhhh-hCCCEEEEEEEcC
Confidence 367899999999999999999998887664 3567898887664
No 244
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=95.59 E-value=0.14 Score=52.31 Aligned_cols=113 Identities=13% Similarity=0.044 Sum_probs=63.4
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhC----CCcEEEEeCC-CCHHHHHHHHHHHhC--CCCccccccCCCCcchHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIEN----KLPVAIFSME-MSGIQLAMRMLGSVG--KLDQHKLRTGRLSSDDWPRIN 288 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~----g~~vl~~s~E-~~~~~i~~R~~a~~~--~i~~~~i~~g~l~~~~~~~~~ 288 (452)
-+++++++|+|||..++-.+.+..... +.+++|++-- .-..++..++..... ++....+..+.-....+..+.
T Consensus 24 ~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 103 (556)
T 4a2p_A 24 NALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI 103 (556)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH
T ss_pred CEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh
Confidence 489999999999988777777665432 6789998654 233455555544332 555443332222222333221
Q ss_pred HHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHH-HcCCccEEEEcCcchhcc
Q psy2891 289 DSIKKINKSQLYIDETPSLNVIELRANSRRLSR-QCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 289 ~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~-~~~~~~~vvID~l~~i~~ 339 (452)
.+..+.|. |++.+...+..-.. ...++++||||-.+.+..
T Consensus 104 ------~~~~i~v~-----T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~ 144 (556)
T 4a2p_A 104 ------EDSDIIVV-----TPQILVNSFEDGTLTSLSIFTLMIFDECHNTTG 144 (556)
T ss_dssp ------HHCSEEEE-----CHHHHHHHHHSSSCCCSTTCSEEEEETGGGCST
T ss_pred ------CCCCEEEE-----CHHHHHHHHHhCcccccccCCEEEEECCcccCC
Confidence 23456664 45555554432100 112478999999998864
No 245
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.58 E-value=0.0055 Score=58.00 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=31.3
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
+.|+.+.-.+++|+.+.|.|++|+|||||+.-++.-.
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3566665579999999999999999999998887655
No 246
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.58 E-value=0.012 Score=52.31 Aligned_cols=37 Identities=11% Similarity=0.255 Sum_probs=32.5
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS 254 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~ 254 (452)
+.+..+..|+|||+++.++|..++. .| +|+.+.++..
T Consensus 3 I~v~s~KGGvGKTT~a~~LA~~la~-~g-~VlliD~D~q 39 (209)
T 3cwq_A 3 ITVASFKGGVGKTTTAVHLSAYLAL-QG-ETLLIDGDPN 39 (209)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHT-TS-CEEEEEECTT
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHh-cC-CEEEEECCCC
Confidence 4567899999999999999999985 68 9999998865
No 247
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=95.55 E-value=0.0083 Score=55.48 Aligned_cols=38 Identities=13% Similarity=0.291 Sum_probs=33.1
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSG 255 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~ 255 (452)
+.+..+..|+||||++.++|..++ .|.+|+.+.++...
T Consensus 30 I~v~s~kGGvGKTT~a~~LA~~la--~g~~VlliD~D~~~ 67 (267)
T 3k9g_A 30 ITIASIKGGVGKSTSAIILATLLS--KNNKVLLIDMDTQA 67 (267)
T ss_dssp EEECCSSSSSCHHHHHHHHHHHHT--TTSCEEEEEECTTC
T ss_pred EEEEeCCCCchHHHHHHHHHHHHH--CCCCEEEEECCCCC
Confidence 455578999999999999999998 58999999998654
No 248
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=95.54 E-value=0.059 Score=48.42 Aligned_cols=115 Identities=15% Similarity=0.111 Sum_probs=60.6
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHH--hCCCcEEEEeCC-CCHHHHHHHHHHHhC---CCCccccccCCCCcchHHHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAI--ENKLPVAIFSME-MSGIQLAMRMLGSVG---KLDQHKLRTGRLSSDDWPRI 287 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~--~~g~~vl~~s~E-~~~~~i~~R~~a~~~---~i~~~~i~~g~l~~~~~~~~ 287 (452)
|.-+++.+++|+|||...+-.+..... ..+.+++|+.-- .-..++..++..... ++.... ..|.....++
T Consensus 61 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~--- 136 (230)
T 2oxc_A 61 GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHV-FIGGTPLSQD--- 136 (230)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEE-ECTTSCHHHH---
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEE-EeCCCCHHHH---
Confidence 345889999999999654433333321 235688888643 233455555544322 222221 2233332222
Q ss_pred HHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccC
Q psy2891 288 NDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSAN 340 (452)
Q Consensus 288 ~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~ 340 (452)
...+.+..+.+. |++.+...+..-.....++++||||-.+.+...
T Consensus 137 ---~~~~~~~~Iiv~-----Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~ 181 (230)
T 2oxc_A 137 ---KTRLKKCHIAVG-----SPGRIKQLIELDYLNPGSIRLFILDEADKLLEE 181 (230)
T ss_dssp ---HHHTTSCSEEEE-----CHHHHHHHHHTTSSCGGGCCEEEESSHHHHHST
T ss_pred ---HHhccCCCEEEE-----CHHHHHHHHhcCCcccccCCEEEeCCchHhhcC
Confidence 122344566664 455665544321111114789999999988653
No 249
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.54 E-value=0.083 Score=50.56 Aligned_cols=113 Identities=19% Similarity=0.146 Sum_probs=62.8
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHh-CCCcEEEEeCCC-CHHHHHHHHHHHhC--CCCccccccCCCCcchHHHHHHH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIE-NKLPVAIFSMEM-SGIQLAMRMLGSVG--KLDQHKLRTGRLSSDDWPRINDS 290 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~-~g~~vl~~s~E~-~~~~i~~R~~a~~~--~i~~~~i~~g~l~~~~~~~~~~a 290 (452)
.-+++.|++|+|||..++..+...... .+.+++++..-. -..++..++..... ++....+..+ .... ..
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~-~~~~------~~ 117 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGG-KAIY------PQ 117 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTT-SCHH------HH
T ss_pred CCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECC-cchH------HH
Confidence 468999999999998877777665432 367899887432 22445555543322 2222222222 1111 11
Q ss_pred HHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhcc
Q psy2891 291 IKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 291 ~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~ 339 (452)
...+.+.++.+. |++.+...+..-.....++++||||-.+.+..
T Consensus 118 ~~~~~~~~iiv~-----T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~ 161 (367)
T 1hv8_A 118 IKALKNANIVVG-----TPGRILDHINRGTLNLKNVKYFILDEADEMLN 161 (367)
T ss_dssp HHHHHTCSEEEE-----CHHHHHHHHHTTCSCTTSCCEEEEETHHHHHT
T ss_pred HhhcCCCCEEEe-----cHHHHHHHHHcCCcccccCCEEEEeCchHhhh
Confidence 222345566664 45555544332111112579999999998764
No 250
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.54 E-value=0.079 Score=57.57 Aligned_cols=29 Identities=14% Similarity=0.255 Sum_probs=25.5
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.+.+|++++|.||.|+||||++.+++...
T Consensus 669 ~~~~g~i~~ItGPNGaGKSTlLr~i~~i~ 697 (918)
T 3thx_B 669 SEDSERVMIITGPNMGGKSSYIKQVALIT 697 (918)
T ss_dssp CTTSCCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCchHHHHHHHHHHH
Confidence 46789999999999999999999987543
No 251
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.53 E-value=0.0073 Score=55.20 Aligned_cols=51 Identities=22% Similarity=0.203 Sum_probs=30.1
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHh----CCCcEEEEeCC
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE----NKLPVAIFSME 252 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~----~g~~vl~~s~E 252 (452)
..|+.+.--+.+|.++.|.|++|+||||++.-++...-.- ....+.|++.+
T Consensus 13 ~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d 67 (245)
T 2jeo_A 13 LGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQD 67 (245)
T ss_dssp ----------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGG
T ss_pred eeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCC
Confidence 3456654468899999999999999999998877643100 02346676654
No 252
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.51 E-value=0.21 Score=50.88 Aligned_cols=109 Identities=12% Similarity=0.199 Sum_probs=60.5
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCccccccCCCCcchH---HH---
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDW---PR--- 286 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~---~~--- 286 (452)
...+++++|.||+||||++..++...-. .+..+..|+.+ ++..++.. +.....+... ..++.. ++
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~-~~~d~~v~s~D----~~r~~~~~---~~~~~~~f~~-~~~~~~~~re~~~~ 104 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNW-IGVPTKVFNVG----EYRREAVK---QYSSYNFFRP-DNEEAMKVRKQCAL 104 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHH----HHHHHHHS---CCCCGGGGCT-TCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh-cCCCeEEeccc----HHHHHhcc---CCccccccCc-ccHHHHHHHHHHHH
Confidence 3468999999999999999999987754 46778777754 34433321 1111111110 111111 11
Q ss_pred --HHHHHHHH--hCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEc
Q psy2891 287 --INDSIKKI--NKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIID 332 (452)
Q Consensus 287 --~~~a~~~l--~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID 332 (452)
+..+...+ ......|.|....+.. .+..+..+.+++| +.+++|+
T Consensus 105 ~~l~~~~~~L~~~~g~~VIvDat~~~~~-~R~~~~~~a~~~g-~~v~~l~ 152 (520)
T 2axn_A 105 AALRDVKSYLAKEGGQIAVFDATNTTRE-RRHMILHFAKEND-FKAFFIE 152 (520)
T ss_dssp HHHHHHHHHHHHSCCCEEEEESCCCSHH-HHHHHHHHHHHHT-CEEEEEE
T ss_pred HHHHHHHHHHHhcCCceEEecCCCCCHH-HHHHHHHHHHHcC-CeEEEEE
Confidence 22223344 3456666666555543 4444445555565 7777775
No 253
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.50 E-value=0.0064 Score=53.67 Aligned_cols=27 Identities=11% Similarity=0.210 Sum_probs=21.5
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
++|.+++|.||+|+||||++.-++...
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998887644
No 254
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=95.49 E-value=0.068 Score=59.00 Aligned_cols=108 Identities=22% Similarity=0.217 Sum_probs=61.9
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC-CCHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHH
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME-MSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDS 290 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E-~~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a 290 (452)
..|.-++++|++|+|||..+.-.+... ...|.+++|++-- .-..++..++..... +. .+..|..+..
T Consensus 99 ~~g~~vLV~apTGSGKTlva~lai~~~-l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~--~v-glltGd~~~~-------- 166 (1010)
T 2xgj_A 99 DRGESVLVSAHTSAGKTVVAEYAIAQS-LKNKQRVIYTSPIKALSNQKYRELLAEFG--DV-GLMTGDITIN-------- 166 (1010)
T ss_dssp HHTCEEEEECCTTSCHHHHHHHHHHHH-HHTTCEEEEEESSHHHHHHHHHHHHHHHS--CE-EEECSSCEEC--------
T ss_pred HcCCCEEEECCCCCChHHHHHHHHHHH-hccCCeEEEECChHHHHHHHHHHHHHHhC--CE-EEEeCCCccC--------
Confidence 346779999999999998775444444 4578899998753 223445555543322 11 1233433211
Q ss_pred HHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccC
Q psy2891 291 IKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSAN 340 (452)
Q Consensus 291 ~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~ 340 (452)
.+.++.|. |.+.+...+.+-.....++++||||-.+.+...
T Consensus 167 ----~~~~IvV~-----Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~ 207 (1010)
T 2xgj_A 167 ----PDAGCLVM-----TTEILRSMLYRGSEVMREVAWVIFDEVHYMRDK 207 (1010)
T ss_dssp ----TTCSEEEE-----EHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCT
T ss_pred ----CCCCEEEE-----cHHHHHHHHHcCcchhhcCCEEEEechhhhccc
Confidence 02345443 455555544321111125899999999988653
No 255
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.45 E-value=0.0082 Score=52.03 Aligned_cols=27 Identities=22% Similarity=0.478 Sum_probs=22.9
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.+|.+++|.|+||+||||++..++...
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357789999999999999999987653
No 256
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=95.45 E-value=0.015 Score=54.60 Aligned_cols=39 Identities=15% Similarity=0.202 Sum_probs=32.8
Q ss_pred EEEEE---eCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCH
Q psy2891 216 LIIVA---GRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSG 255 (452)
Q Consensus 216 l~~i~---g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~ 255 (452)
.++|+ +..|+||||++.++|..++. .|.+|+.+.++...
T Consensus 36 ~i~v~~~s~KGGvGKTT~a~nLA~~la~-~G~rVlliD~D~q~ 77 (298)
T 2oze_A 36 AIVILNNYFKGGVGKSKLSTMFAYLTDK-LNLKVLMIDKDLQA 77 (298)
T ss_dssp CEEEEECCSSSSSSHHHHHHHHHHHHHH-TTCCEEEEEECTTC
T ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHh-CCCeEEEEeCCCCC
Confidence 44455 59999999999999999985 79999999998653
No 257
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=95.44 E-value=0.04 Score=54.01 Aligned_cols=114 Identities=12% Similarity=0.022 Sum_probs=61.0
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHh--CCCcEEEEeCCC-CHHHHHHHHHHHh--CCCCccccccCCCCcchHHHHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIE--NKLPVAIFSMEM-SGIQLAMRMLGSV--GKLDQHKLRTGRLSSDDWPRIN 288 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~--~g~~vl~~s~E~-~~~~i~~R~~a~~--~~i~~~~i~~g~l~~~~~~~~~ 288 (452)
|.-+++.|++|+|||..++..+...... .+.+++|+.--- -..++..++.... .++.......| ..+..
T Consensus 77 ~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~----~~~~~-- 150 (414)
T 3eiq_A 77 GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGG----TNVRA-- 150 (414)
T ss_dssp TCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCC----TTHHH--
T ss_pred CCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECC----cchHH--
Confidence 4448999999999998776666655432 356788886542 2344555544322 22322222222 11111
Q ss_pred HHHHHHh--CCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhcc
Q psy2891 289 DSIKKIN--KSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 289 ~a~~~l~--~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~ 339 (452)
....+. ...+.+. |++.+...+..-.....++++||||-.+.+..
T Consensus 151 -~~~~~~~~~~~iiv~-----T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~ 197 (414)
T 3eiq_A 151 -EVQKLQMEAPHIIVG-----TPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS 197 (414)
T ss_dssp -HHHHHTTTCCSEEEE-----CHHHHHHHHHHTSSCSTTCCEEEECSHHHHHH
T ss_pred -HHHHHhcCCCCEEEE-----CHHHHHHHHHcCCcccccCcEEEEECHHHhhc
Confidence 112222 2355553 45556554433111112489999999998764
No 258
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.42 E-value=0.016 Score=61.05 Aligned_cols=53 Identities=25% Similarity=0.224 Sum_probs=42.3
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCH-HHHHHHHHH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSG-IQLAMRMLG 264 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~-~~i~~R~~a 264 (452)
+...++.+|.||||+|||+.+.+++.++.. .|.+||..+.-..+ +++.+|+..
T Consensus 202 l~~~~~~lI~GPPGTGKT~ti~~~I~~l~~-~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 202 LSQKELAIIHGPPGTGKTTTVVEIILQAVK-QGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp HHCSSEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHHHH
T ss_pred hcCCCceEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEcCchHHHHHHHHHHHh
Confidence 334569999999999999999999998864 78999998876443 567777753
No 259
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=95.41 E-value=0.017 Score=51.67 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=28.9
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEe
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFS 250 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s 250 (452)
+.+..+.+|+|||+++.++|..++. .|++|+++.
T Consensus 4 I~v~s~kgGvGKTt~a~nLa~~la~-~G~rVll~d 37 (224)
T 1byi_A 4 YFVTGTDTEVGKTVASCALLQAAKA-AGYRTAGYK 37 (224)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHHHH-TTCCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEc
Confidence 4555667999999999999999985 799999984
No 260
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.41 E-value=0.0098 Score=52.66 Aligned_cols=38 Identities=21% Similarity=0.306 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
-+.+|.++.|.|+||+||||++..++... ..+.+++.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~-----~~~~~i~~D 54 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL-----PNCSVISQD 54 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS-----TTEEEEEGG
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc-----CCcEEEeCC
Confidence 46788999999999999999998766421 146777665
No 261
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=95.40 E-value=0.025 Score=56.51 Aligned_cols=56 Identities=20% Similarity=0.189 Sum_probs=39.2
Q ss_pred CCCCcEEEEEeCCCCChhHHH-HHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCC
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFS-LNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLD 270 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~-l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~ 270 (452)
+..|.-+++.|++|+|||..+ +.++..+ ...+.+++|++ |...++..+.....++.
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~-~~~~~~~lil~---Ptr~La~Q~~~~l~~~~ 61 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAEC-ARRRLRTLVLA---PTRVVLSEMKEAFHGLD 61 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHH-HHTTCCEEEEE---SSHHHHHHHHHHTTTSC
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHH-HhcCCeEEEEc---chHHHHHHHHHHHhcCC
Confidence 567889999999999999865 4444444 34677899987 45566666655554444
No 262
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.35 E-value=0.055 Score=53.58 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=21.4
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHH
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGE 236 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~ 236 (452)
...+++|+|+||+||||++..++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999988764
No 263
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=95.34 E-value=0.11 Score=53.36 Aligned_cols=53 Identities=13% Similarity=0.111 Sum_probs=36.7
Q ss_pred CcEEEEEeCCCCChhHHHHHHHH---HHHHhCCCcEEEEeCCCC----HHHHHHHHHHHh
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGE---HIAIENKLPVAIFSMEMS----GIQLAMRMLGSV 266 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~---~~a~~~g~~vl~~s~E~~----~~~i~~R~~a~~ 266 (452)
..++.|.|.+|+|||++|.+++. ......-..++|++.... ...+...++...
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l 211 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLML 211 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998885 222222245778876653 566666666543
No 264
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.34 E-value=0.042 Score=59.24 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=30.2
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
++.+|.-++|.|+||+|||+++..++.. .+.+.+++++
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~----l~~~~i~v~~ 271 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANE----TGAFFFLING 271 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHT----TTCEEEEEEH
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHH----cCCcEEEEEc
Confidence 5788999999999999999999888653 3456666653
No 265
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.33 E-value=0.009 Score=51.31 Aligned_cols=32 Identities=16% Similarity=0.261 Sum_probs=25.0
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
.+++|.|+||+||||++..++.. .....+++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~-----~~~~~~i~~ 34 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK-----NPGFYNINR 34 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH-----STTEEEECH
T ss_pred eEEEEecCCCCCHHHHHHHHHhh-----cCCcEEecH
Confidence 37899999999999999988762 134667765
No 266
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.32 E-value=0.0078 Score=54.86 Aligned_cols=36 Identities=25% Similarity=0.353 Sum_probs=29.7
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
+.|+.+.--+.+|+++.|.|++|+|||||+.-++--
T Consensus 19 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 19 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred ceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 346666556899999999999999999999876643
No 267
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.29 E-value=0.011 Score=52.19 Aligned_cols=27 Identities=11% Similarity=0.300 Sum_probs=23.4
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
..+|.+++|.||+|+||||++..++..
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 347889999999999999999988754
No 268
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.26 E-value=0.0096 Score=50.89 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=21.5
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|.+++|.|+||+||||++..++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999888764
No 269
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=95.26 E-value=0.011 Score=54.49 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=33.0
Q ss_pred cEEEE-EeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy2891 215 DLIIV-AGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS 254 (452)
Q Consensus 215 ~l~~i-~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~ 254 (452)
.++.| .+.+|+|||+++.++|..++. .|.+|+++.++..
T Consensus 7 ~vI~v~s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~ 46 (257)
T 1wcv_1 7 RRIALANQKGGVGKTTTAINLAAYLAR-LGKRVLLVDLDPQ 46 (257)
T ss_dssp CEEEECCSSCCHHHHHHHHHHHHHHHH-TTCCEEEEECCTT
T ss_pred EEEEEEeCCCCchHHHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence 34444 578899999999999999985 6999999999864
No 270
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.25 E-value=0.013 Score=49.74 Aligned_cols=19 Identities=32% Similarity=0.718 Sum_probs=18.0
Q ss_pred EEEEEeCCCCChhHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNI 234 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~i 234 (452)
+++|.|+||+||||++..+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999988
No 271
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.24 E-value=0.011 Score=55.56 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=27.9
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
.+|.+++|+|+||+||||++..++... +..+.++|.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~----~~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET----QGNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT----TTCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh----CCCeEEEec
Confidence 346799999999999999999887643 224566776
No 272
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.24 E-value=0.012 Score=50.09 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.5
Q ss_pred EEEEEeCCCCChhHHHHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
+++|.|+||+||||++..++...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999887654
No 273
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=95.24 E-value=0.031 Score=55.12 Aligned_cols=114 Identities=14% Similarity=0.175 Sum_probs=66.5
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC-CHHHHHHHHHHHh-CCCCccccccCCCCcchHHHHHHHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM-SGIQLAMRMLGSV-GKLDQHKLRTGRLSSDDWPRINDSI 291 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~-~~~~i~~R~~a~~-~~i~~~~i~~g~l~~~~~~~~~~a~ 291 (452)
|.-+++.|++|+|||.+.+-.+.... ..+.+++|+.--. -..++..++.... .++....+ .|..+..++... .
T Consensus 36 ~~~~lv~apTGsGKT~~~l~~~~~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~-~g~~~~~~~~~~---~ 110 (414)
T 3oiy_A 36 GKSFTMVAPTGVGKTTFGMMTALWLA-RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGF-YSSMKKEEKEKF---E 110 (414)
T ss_dssp TCCEECCSCSSSSHHHHHHHHHHHHH-TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEEC-CTTSCHHHHHHH---H
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHh-cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEE-ECCCChhhHHHH---H
Confidence 44578999999999996666666654 4678899986542 2345555554422 23333322 344444333222 2
Q ss_pred HHHh-C-CCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhcc
Q psy2891 292 KKIN-K-SQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 292 ~~l~-~-~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~ 339 (452)
..+. + .++.+. |++.+...+..+. .. ++++||||-.+.+..
T Consensus 111 ~~l~~~~~~Iiv~-----Tp~~l~~~l~~~~-~~-~~~~iViDEaH~~~~ 153 (414)
T 3oiy_A 111 KSFEEDDYHILVF-----STQFVSKNREKLS-QK-RFDFVFVDDVDAVLK 153 (414)
T ss_dssp HHHHHTCCSEEEE-----EHHHHHHCHHHHT-TC-CCSEEEESCHHHHHH
T ss_pred HHhhcCCCCEEEE-----CHHHHHHHHHHhc-cc-cccEEEEeChHhhhh
Confidence 2232 2 456664 4566655555432 22 599999999987653
No 274
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.23 E-value=0.069 Score=55.37 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=26.9
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGE 236 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~ 236 (452)
.|+.+.--+++|+.+.|.|++|+||||++.-++.
T Consensus 358 ~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp SEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTT
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3444433478999999999999999999876654
No 275
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.22 E-value=0.025 Score=54.42 Aligned_cols=45 Identities=24% Similarity=0.286 Sum_probs=36.9
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGI 256 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~ 256 (452)
..+|..+.|.|+||+||||++..++..... .|.+|.+++.+....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~-~~~~v~v~~~d~~~~ 97 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIR-EGLKVAVIAVDPSSP 97 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCC--
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHh-cCCeEEEEeecCCcC
Confidence 356788999999999999999999988764 688899998887543
No 276
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.20 E-value=0.014 Score=51.27 Aligned_cols=37 Identities=30% Similarity=0.419 Sum_probs=28.9
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
.+|-+++|.|+||+||||++..++... .|.+++.+..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l---~g~~~~~~~~ 38 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI---PANTIKYLNF 38 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS---CGGGEEEEES
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH---CCCceEEEec
Confidence 357799999999999999999887654 2566766553
No 277
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=95.19 E-value=0.015 Score=60.46 Aligned_cols=52 Identities=19% Similarity=0.279 Sum_probs=42.2
Q ss_pred cccccccCC--CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy2891 202 FELDKITSG--LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS 254 (452)
Q Consensus 202 ~~LD~~~gG--~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~ 254 (452)
+.||.+.++ -..+.+.++.|.+|+|||+++.++|..++. .|.+|++++++..
T Consensus 313 ~~l~~~~~~~~~~~~~~~~~~~~~g~Gktt~a~~lA~~l~~-~g~~vllvD~Dp~ 366 (589)
T 1ihu_A 313 PSLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLAD-MGFDVHLTTSDPA 366 (589)
T ss_dssp CCHHHHHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEESCCC
T ss_pred chhhhhhhhhhccCCeEEEEecCCCCChhhHHHHHHHHHHH-CCCcEEEEeCCCc
Confidence 556665443 334568888999999999999999999985 7999999999965
No 278
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.19 E-value=0.077 Score=57.84 Aligned_cols=129 Identities=14% Similarity=0.133 Sum_probs=74.1
Q ss_pred cccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHh----CCCcEEEEeCC-------CCHHHHH--------HHHH-
Q psy2891 204 LDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE----NKLPVAIFSME-------MSGIQLA--------MRML- 263 (452)
Q Consensus 204 LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~----~g~~vl~~s~E-------~~~~~i~--------~R~~- 263 (452)
|+.+.--+.+|+++.|.|++|+|||||+.-++...... ...++.|+.-+ ++..+.. .+..
T Consensus 451 L~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~ 530 (986)
T 2iw3_A 451 LNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKD 530 (986)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHH
T ss_pred EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHH
Confidence 44443357899999999999999999998887311000 01234554321 2322221 1111
Q ss_pred -HHhCCCCcc--ccccCCCCcchHHHHHHHHHHHhCCCeEEEcCC--CCCHHHHHHHHHHHHHHcCCccEEEEcCc
Q psy2891 264 -GSVGKLDQH--KLRTGRLSSDDWPRINDSIKKINKSQLYIDETP--SLNVIELRANSRRLSRQCGKIGVIIIDYL 334 (452)
Q Consensus 264 -a~~~~i~~~--~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~--~~t~~~i~~~i~~~~~~~~~~~~vvID~l 334 (452)
....|++.. .-.-+.||..+.+++.-|..-+.+.++.+.|.| .+...........+.. .| ..+|+|-+-
T Consensus 531 ~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~-~g-~tvIivSHd 604 (986)
T 2iw3_A 531 KLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT-CG-ITSITISHD 604 (986)
T ss_dssp HHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH-SC-SEEEEECSC
T ss_pred HHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh-CC-CEEEEEECC
Confidence 122455311 112246788888888777777777788888765 4555544444444433 54 677777653
No 279
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.18 E-value=0.013 Score=51.72 Aligned_cols=35 Identities=23% Similarity=0.330 Sum_probs=27.7
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEE
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIF 249 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~ 249 (452)
+|.+++|.|+||+||||++..++..... .| .|+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~-~g-~~~~~ 37 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL-KR-DVYLT 37 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT-TS-CEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh-cC-CEEEe
Confidence 4678999999999999999999987642 34 56543
No 280
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=95.16 E-value=0.018 Score=53.99 Aligned_cols=37 Identities=11% Similarity=0.345 Sum_probs=32.8
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM 253 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~ 253 (452)
+.+..+..|+|||+++.++|..++. .|.+|+.+.++.
T Consensus 7 I~v~s~KGGvGKTT~a~nLA~~La~-~G~~VlliD~D~ 43 (286)
T 2xj4_A 7 IVVGNEKGGAGKSTIAVHLVTALLY-GGAKVAVIDLDL 43 (286)
T ss_dssp EEECCSSSCTTHHHHHHHHHHHHHH-TTCCEEEEECCT
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHH-CCCcEEEEECCC
Confidence 4555688999999999999999985 699999999987
No 281
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.16 E-value=0.009 Score=58.33 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=28.8
Q ss_pred cccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 204 LDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 204 LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
|+.+.-++++|.+++|.|+||+||||++..++..
T Consensus 159 l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 159 LKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4444457999999999999999999999988864
No 282
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.16 E-value=0.0087 Score=57.83 Aligned_cols=42 Identities=17% Similarity=0.114 Sum_probs=35.3
Q ss_pred ccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 196 GISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 196 ~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.+.||...||.+ -.+.+|+.+.|.|++|+||||++..++...
T Consensus 54 ~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 54 PFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456788889998 678999999999999999999976666553
No 283
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.15 E-value=0.015 Score=50.15 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=28.9
Q ss_pred Ccccc--ccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 200 GFFEL--DKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 200 g~~~L--D~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
+|..+ +.+.-.+.+| +++|.|++|+|||+++-.+..-
T Consensus 11 nf~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 11 GFKSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SBGGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 55666 5554457788 9999999999999998877664
No 284
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=95.11 E-value=0.035 Score=55.00 Aligned_cols=65 Identities=15% Similarity=0.254 Sum_probs=47.4
Q ss_pred ccccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHh----------CCCcEEEEeCCCCHHHHH
Q psy2891 194 VTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE----------NKLPVAIFSMEMSGIQLA 259 (452)
Q Consensus 194 ~~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~----------~g~~vl~~s~E~~~~~i~ 259 (452)
...+.||++.+|-+. .+.+|+=..|.|.+|+|||+++.+++.+.... .+..++|.-.-...+++.
T Consensus 128 ~e~l~TGiraID~l~-pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~ 202 (464)
T 3gqb_B 128 EQFIQTGISTIDVMN-TLVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELS 202 (464)
T ss_dssp CCBCBCSCHHHHTTS-CCBTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHH
T ss_pred cccccCcceeeeccc-ccccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHH
Confidence 346889999999874 57788888899999999999999887765320 111566766665655554
No 285
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.10 E-value=0.0098 Score=51.80 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=20.8
Q ss_pred CcEEEEEeCCCCChhHHHHHHHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGE 236 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~ 236 (452)
|++++|.|+||+||||++..++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 57899999999999999999864
No 286
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.10 E-value=0.013 Score=52.05 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=28.0
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
.+|.++.|.|++|+||||++.-++...- ..+.|++.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~----~~i~~v~~d 40 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG----ERVALLPMD 40 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG----GGEEEEEGG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC----CCeEEEecC
Confidence 5788999999999999999988876541 146666543
No 287
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.09 E-value=0.007 Score=54.70 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=19.3
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHH-HH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIG-EH 237 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia-~~ 237 (452)
+.+|+++.|.|++|+||||++..++ ..
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC--
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 6789999999999999999998887 43
No 288
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.07 E-value=0.014 Score=53.76 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=20.8
Q ss_pred EEEEEeCCCCChhHHHHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
+++|+|+||+||||++..+|...
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 78999999999999999998754
No 289
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.07 E-value=0.017 Score=50.29 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=23.3
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.++.+++|.|+||+||||++..++...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999988654
No 290
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.05 E-value=0.016 Score=49.92 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=23.1
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.++.+++|.|+||+||||++..++...
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999888654
No 291
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.03 E-value=0.017 Score=50.02 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=22.0
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
+..++|.|+||+||||++..++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999988654
No 292
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.02 E-value=0.012 Score=58.61 Aligned_cols=54 Identities=13% Similarity=0.121 Sum_probs=40.0
Q ss_pred ccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 196 GISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 196 ~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
.+.||...||.+ --+.+|+.+.|.|++|+||||++..++... .....++.+..+
T Consensus 140 ~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~--~~~~G~i~~~G~ 193 (438)
T 2dpy_A 140 VLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYT--RADVIVVGLIGE 193 (438)
T ss_dssp BCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHS--CCSEEEEEEESC
T ss_pred ecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhccc--CCCeEEEEEece
Confidence 455678889998 679999999999999999999976666543 223334455554
No 293
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.02 E-value=0.073 Score=48.23 Aligned_cols=96 Identities=16% Similarity=0.154 Sum_probs=53.6
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC-CHHHHHHHHHHHhCCCC-ccccccCCCCcchHHHHHHHHH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM-SGIQLAMRMLGSVGKLD-QHKLRTGRLSSDDWPRINDSIK 292 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~-~~~~i~~R~~a~~~~i~-~~~i~~g~l~~~~~~~~~~a~~ 292 (452)
.-.+|+|++|+|||.+++.++... +.+++|+..-. -..++..++.. .++. ...+ .|....
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~----~~~~liv~P~~~L~~q~~~~~~~--~~~~~v~~~-~g~~~~----------- 170 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGI--FGEEYVGEF-SGRIKE----------- 170 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHS----CSCEEEEESSHHHHHHHHHHHGG--GCGGGEEEE-SSSCBC-----------
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEeCCHHHHHHHHHHHHh--CCCCeEEEE-eCCCCC-----------
Confidence 348899999999999988776543 56788886431 22333443322 2332 2111 221110
Q ss_pred HHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhcc
Q psy2891 293 KINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 293 ~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~ 339 (452)
..++.+. |.+.+......+. .++++||||-.+.+..
T Consensus 171 ---~~~i~v~-----T~~~l~~~~~~~~---~~~~llIiDEaH~l~~ 206 (237)
T 2fz4_A 171 ---LKPLTVS-----TYDSAYVNAEKLG---NRFMLLIFDEVHHLPA 206 (237)
T ss_dssp ---CCSEEEE-----EHHHHHHTHHHHT---TTCSEEEEECSSCCCT
T ss_pred ---cCCEEEE-----eHHHHHhhHHHhc---ccCCEEEEECCccCCC
Confidence 1244443 3444444333321 2489999999998854
No 294
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.01 E-value=0.025 Score=55.14 Aligned_cols=40 Identities=18% Similarity=0.216 Sum_probs=31.3
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEe
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFS 250 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s 250 (452)
+.+|++++|.|++|+||||++..++..........|+++.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e 172 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 172 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEec
Confidence 6889999999999999999999988876433134565543
No 295
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.01 E-value=0.012 Score=54.12 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=29.0
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
..++.+++|.|+||+||||++..++... +..+.+++.+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l----~~~~~~~~~D 66 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEF----QGNIVIIDGD 66 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHT----TTCCEEECGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhc----CCCcEEEecH
Confidence 3456799999999999999999887653 3345666665
No 296
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=95.00 E-value=0.3 Score=51.46 Aligned_cols=115 Identities=17% Similarity=0.058 Sum_probs=64.9
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCC----CcEEEEeCC-CCHHHHHHHHHHHhC--CCCccccccCCCCcchHHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENK----LPVAIFSME-MSGIQLAMRMLGSVG--KLDQHKLRTGRLSSDDWPR 286 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g----~~vl~~s~E-~~~~~i~~R~~a~~~--~i~~~~i~~g~l~~~~~~~ 286 (452)
|.-+++++++|+|||..++..+.+.....+ .++++++.- .-..++...+..... ++....+..+.-....+..
T Consensus 28 g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~ 107 (696)
T 2ykg_A 28 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQ 107 (696)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHH
T ss_pred CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHH
Confidence 345899999999999988877776654332 678888653 223445554443322 4444333322222233333
Q ss_pred HHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHH-HcCCccEEEEcCcchhcc
Q psy2891 287 INDSIKKINKSQLYIDETPSLNVIELRANSRRLSR-QCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 287 ~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~-~~~~~~~vvID~l~~i~~ 339 (452)
+. .+..+.|. |++.+...+..-.. ...++++||||-.+.+..
T Consensus 108 ~~------~~~~Iiv~-----Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~ 150 (696)
T 2ykg_A 108 IV------ENNDIIIL-----TPQILVNNLKKGTIPSLSIFTLMIFDECHNTSK 150 (696)
T ss_dssp HH------HTCSEEEE-----CHHHHHHHHHTTSSCCGGGCSEEEEETGGGCST
T ss_pred hc------cCCCEEEE-----CHHHHHHHHhcCcccccccccEEEEeCCCcccC
Confidence 21 23456664 45556554432100 111479999999998763
No 297
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.99 E-value=0.016 Score=50.43 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.7
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
+.+++|.|+||+||||++..++...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999887653
No 298
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.99 E-value=0.056 Score=56.03 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=27.4
Q ss_pred cccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 204 LDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 204 LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
|+.+.--+++|+.+.|.|++|+||||++.-++.-
T Consensus 359 l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 4444334789999999999999999998876653
No 299
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=94.98 E-value=0.012 Score=57.18 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=33.6
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS 254 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~ 254 (452)
+.+..+..|+||||++.++|..+|. .|.+|+.+.++..
T Consensus 4 Iav~s~KGGvGKTT~a~nLA~~LA~-~G~rVLlID~D~q 41 (361)
T 3pg5_A 4 ISFFNNKGGVGKTTLSTNVAHYFAL-QGKRVLYVDCDPQ 41 (361)
T ss_dssp EEBCCSSCCHHHHHHHHHHHHHHHH-TTCCEEEEECCTT
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHh-CCCcEEEEEcCCC
Confidence 4556689999999999999999985 7999999999865
No 300
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.98 E-value=0.012 Score=54.70 Aligned_cols=34 Identities=21% Similarity=0.442 Sum_probs=28.6
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGE 236 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~ 236 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-
T Consensus 35 vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4666644589999999999999999999887665
No 301
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.97 E-value=0.01 Score=54.20 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=29.2
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+++|+++.|.|++|+|||||+.-++--
T Consensus 17 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred eEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46666556899999999999999999998877653
No 302
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.96 E-value=0.019 Score=49.87 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=22.9
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
..+|..++|.|+||+||||++..++..
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 345778999999999999999888764
No 303
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.93 E-value=0.0099 Score=53.84 Aligned_cols=36 Identities=31% Similarity=0.399 Sum_probs=29.4
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
+.|+.+.--+++|+++.|.|++|+|||||+.-++--
T Consensus 22 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 356666556899999999999999999998876643
No 304
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.93 E-value=0.026 Score=53.44 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=31.3
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHH-hCCCcEEEEeCC
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAI-ENKLPVAIFSME 252 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~-~~g~~vl~~s~E 252 (452)
..+|.++.|.|++|+|||||+.-++..... ..+..|.+++.+
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d 119 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTD 119 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecC
Confidence 467899999999999999999887765420 123457776655
No 305
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=94.90 E-value=0.022 Score=57.20 Aligned_cols=65 Identities=15% Similarity=0.221 Sum_probs=51.2
Q ss_pred cccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHH
Q psy2891 195 TGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMR 261 (452)
Q Consensus 195 ~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R 261 (452)
..+.||++.+|-+. .+-+|+=..|.|++|+|||++++....+.+ ..+..|+|.-.....+++.+=
T Consensus 145 epl~TGiraID~l~-PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~-~~dv~~V~~~iGeR~~Ev~~~ 209 (507)
T 1fx0_A 145 EPLQTGLIAIDAMI-PVGRGQRELIIGDRQTGKTAVATDTILNQQ-GQNVICVYVAIGQKASSVAQV 209 (507)
T ss_dssp SBCCCSCTTTTTTS-CCBTTCBCBEEESSSSSHHHHHHHHHHTCC-TTTCEEEEEEESCCHHHHHHH
T ss_pred Ccccccceeccccc-ccccCCEEEEecCCCCCccHHHHHHHHHhh-cCCcEEEEEEcCCCchHHHHH
Confidence 46889999999874 588899999999999999999887776664 345567888777777766543
No 306
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=94.90 E-value=0.06 Score=60.05 Aligned_cols=108 Identities=21% Similarity=0.205 Sum_probs=64.1
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC-CHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM-SGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRIND 289 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~-~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~ 289 (452)
+..|.-++++|++|+|||..+...+.... ..|.+|+|++--- -..|+..++......+ . +..|..+..
T Consensus 196 i~~g~dvLV~ApTGSGKTlva~l~i~~~l-~~g~rvlvl~PtraLa~Q~~~~l~~~~~~V--g-lltGd~~~~------- 264 (1108)
T 3l9o_A 196 IDRGESVLVSAHTSAGKTVVAEYAIAQSL-KNKQRVIYTSPIKALSNQKYRELLAEFGDV--G-LMTGDITIN------- 264 (1108)
T ss_dssp HTTTCCEEEECCSSSHHHHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHHHHTSSE--E-EECSSCBCC-------
T ss_pred HHcCCCEEEECCCCCChHHHHHHHHHHHH-hcCCeEEEEcCcHHHHHHHHHHHHHHhCCc--c-EEeCccccC-------
Confidence 44678899999999999988777766664 4688999987542 2345555555433321 1 233333211
Q ss_pred HHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhcc
Q psy2891 290 SIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 290 a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~ 339 (452)
.+.++.|. |++.+...+.+-.....++++||||-.+.+..
T Consensus 265 -----~~~~IlV~-----Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d 304 (1108)
T 3l9o_A 265 -----PDAGCLVM-----TTEILRSMLYRGSEVMREVAWVIFDEVHYMRD 304 (1108)
T ss_dssp -----CSCSEEEE-----EHHHHHHHHHHCSSHHHHEEEEEEETGGGTTS
T ss_pred -----CCCCEEEe-----ChHHHHHHHHcCccccccCCEEEEhhhhhccc
Confidence 12345543 45556554433110011489999999997753
No 307
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.90 E-value=0.011 Score=54.36 Aligned_cols=34 Identities=15% Similarity=0.252 Sum_probs=28.6
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGE 236 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~ 236 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-
T Consensus 18 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4666644689999999999999999999887765
No 308
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.90 E-value=0.011 Score=55.08 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=29.1
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++--
T Consensus 34 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46666456899999999999999999998876653
No 309
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.89 E-value=0.011 Score=54.58 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=29.2
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+++|+++.|.|++|+|||||+.-++--
T Consensus 35 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 35 TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46666456899999999999999999998877653
No 310
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=94.89 E-value=0.097 Score=57.71 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=31.2
Q ss_pred CccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCc
Q psy2891 325 KIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNR 376 (452)
Q Consensus 325 ~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r 376 (452)
++.+|++|-+.. +.+.......+...|+.++++.++.+|+++|.-.
T Consensus 868 ~~sLlLLDEp~~------Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e 913 (1022)
T 2o8b_B 868 AHSLVLVDELGR------GTATFDGTAIANAVVKELAETIKCRTLFSTHYHS 913 (1022)
T ss_dssp TTCEEEEECTTT------TSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH
T ss_pred CCcEEEEECCCC------CCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH
Confidence 489999999642 2333333334556677777767999999998754
No 311
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=94.89 E-value=0.046 Score=54.17 Aligned_cols=63 Identities=14% Similarity=0.191 Sum_probs=47.0
Q ss_pred cccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCC----cEEEEeCCCCHHHHH
Q psy2891 195 TGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKL----PVAIFSMEMSGIQLA 259 (452)
Q Consensus 195 ~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~----~vl~~s~E~~~~~i~ 259 (452)
..+.||++.+|-+. .+-+|+=..|.|.+|+|||+++.+++.+... ++. .++|.-.-...+++.
T Consensus 133 e~l~TGiraID~l~-pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~-~~d~~~~~~V~~~iGeR~~Ev~ 199 (465)
T 3vr4_D 133 EFIQTGISAIDHLN-TLVRGQKLPVFSGSGLPHKELAAQIARQATV-LDSSDDFAVVFAAIGITFEEAE 199 (465)
T ss_dssp CBCBCSCHHHHTTS-CCBTTCBCCEEECTTSCHHHHHHHHHHHCBC-SSCSSCEEEEEEEEEECHHHHH
T ss_pred cccccCceEEeccc-ccccCCEEEEeCCCCcChHHHHHHHHHHHHh-ccCCCceEEEEEEecCCcHHHH
Confidence 45889999999874 5778888889999999999999988776532 222 566766665655554
No 312
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.86 E-value=0.0095 Score=54.65 Aligned_cols=35 Identities=29% Similarity=0.494 Sum_probs=28.9
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+++|+++.|.|++|+|||||+.-++--
T Consensus 24 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46666446899999999999999999998876553
No 313
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.85 E-value=0.02 Score=51.20 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=22.8
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
+|-+++|.|+||+||||++..++...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56689999999999999999988754
No 314
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=94.85 E-value=0.18 Score=48.83 Aligned_cols=114 Identities=16% Similarity=0.121 Sum_probs=59.8
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHh--CCCcEEEEeCC-CCHHHHHHHHHHHhC---CCCccccccCCCCcchHHHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIE--NKLPVAIFSME-MSGIQLAMRMLGSVG---KLDQHKLRTGRLSSDDWPRI 287 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~--~g~~vl~~s~E-~~~~~i~~R~~a~~~---~i~~~~i~~g~l~~~~~~~~ 287 (452)
|.-+++.+++|+|||..++-.+...... .+.+++|+.-- .-..++..++..... ++....+ .|..+..++.
T Consensus 45 ~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~-- 121 (391)
T 1xti_A 45 GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVF-FGGLSIKKDE-- 121 (391)
T ss_dssp TCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEE-CTTSCHHHHH--
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEE-eCCCCHHHHH--
Confidence 3458999999999997766666554321 24578888643 223344444433221 3333222 2333322221
Q ss_pred HHHHHHHh-C-CCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhcc
Q psy2891 288 NDSIKKIN-K-SQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 288 ~~a~~~l~-~-~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~ 339 (452)
..+. . ..+.+. |++.+...+..-.....++++||||-.+.+..
T Consensus 122 ----~~~~~~~~~iiv~-----T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~ 166 (391)
T 1xti_A 122 ----EVLKKNCPHIVVG-----TPGRILALARNKSLNLKHIKHFILDECDKMLE 166 (391)
T ss_dssp ----HHHHHSCCSEEEE-----CHHHHHHHHHTTSSCCTTCSEEEECSHHHHTS
T ss_pred ----HHHhcCCCCEEEE-----CHHHHHHHHHcCCccccccCEEEEeCHHHHhh
Confidence 1122 2 345553 45555554332111112588999999998854
No 315
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.81 E-value=0.039 Score=53.31 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=34.0
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHH
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGI 256 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~ 256 (452)
+++..+.|.|+||+|||||...++.... ..+.+|.++..+.+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~-~~~~~v~V~~~dp~~~ 115 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT-ERGHKLSVLAVDPSSC 115 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEECCC---
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh-hcCCeEEEEeecCCCC
Confidence 3456899999999999999999987664 4578899988876543
No 316
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.81 E-value=0.065 Score=55.71 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=26.9
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGE 236 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~ 236 (452)
.|+.+.--+++|+.+.|.|++|+||||++.-++.
T Consensus 370 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp SCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTT
T ss_pred cccceEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3444433488999999999999999999876554
No 317
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=94.80 E-value=0.31 Score=52.47 Aligned_cols=116 Identities=15% Similarity=0.092 Sum_probs=64.9
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhC----CCcEEEEeCCC-CHHHHHHHHHHHhC--CCCccccccCCCCcchHH
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIEN----KLPVAIFSMEM-SGIQLAMRMLGSVG--KLDQHKLRTGRLSSDDWP 285 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~----g~~vl~~s~E~-~~~~i~~R~~a~~~--~i~~~~i~~g~l~~~~~~ 285 (452)
.|.-+++++++|+|||..++..+....... +.+|++++.-- -..++..++..... ++....+..+.-....+.
T Consensus 262 ~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~ 341 (797)
T 4a2q_A 262 NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVE 341 (797)
T ss_dssp TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHH
T ss_pred hCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHH
Confidence 345689999999999988777777665432 67899987642 33455555544322 555444333221122222
Q ss_pred HHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHH-HcCCccEEEEcCcchhcc
Q psy2891 286 RINDSIKKINKSQLYIDETPSLNVIELRANSRRLSR-QCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 286 ~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~-~~~~~~~vvID~l~~i~~ 339 (452)
.+ ..+..+.|. |++.+...+..-.. ...++++||||-.+.+..
T Consensus 342 ~~------~~~~~Ivv~-----Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~ 385 (797)
T 4a2q_A 342 KV------IEDSDIIVV-----TPQILVNSFEDGTLTSLSIFTLMIFDECHNTTG 385 (797)
T ss_dssp HH------HHTCSEEEE-----CHHHHHHHHHSSSCCCGGGCSEEEETTGGGCST
T ss_pred Hh------hCCCCEEEE-----chHHHHHHHHhccccccccCCEEEEECccccCC
Confidence 21 234466664 45555554432100 011369999999988765
No 318
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.77 E-value=0.035 Score=48.32 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=26.7
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEE
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIF 249 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~ 249 (452)
+++|.|++|+||||++..++.... ..|.+|+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~-~~g~~v~~~ 34 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE-KRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH-HCCC-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEe
Confidence 689999999999999999988774 467877644
No 319
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.75 E-value=0.046 Score=49.60 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=35.7
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRM 262 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~ 262 (452)
.+|.+++|.|++|+||||++..++.... ..|.++..++-|-....+.+.+
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~rep~~t~~g~~i 74 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRTREPGGTLLAEKL 74 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEEESSCSSHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeeecCCCCCHHHHHH
Confidence 4678999999999999999999998875 4678833444454433444444
No 320
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.75 E-value=0.024 Score=53.37 Aligned_cols=39 Identities=15% Similarity=0.300 Sum_probs=31.4
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
+...++|.|+||+|||+++..++.... ..+.+++++++.
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~-~~~~~~~~~~~~ 84 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLF-DTEEAMIRIDMT 84 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHH-SCGGGEEEEEGG
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHc-CCCcceEEeecc
Confidence 344789999999999999999998774 345678888764
No 321
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.73 E-value=0.016 Score=49.98 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=17.3
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
++.+++|.|.||+||||++..++..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999988654
No 322
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.72 E-value=0.02 Score=50.34 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.8
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
..+++|.|+||+||||++..++...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999888754
No 323
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.72 E-value=0.1 Score=50.56 Aligned_cols=110 Identities=14% Similarity=0.008 Sum_probs=58.4
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHh--CCCcEEEEeCCC-CHHHHHHHHHHHh--CCCCccccccCCCCcchHHHHHH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIE--NKLPVAIFSMEM-SGIQLAMRMLGSV--GKLDQHKLRTGRLSSDDWPRIND 289 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~--~g~~vl~~s~E~-~~~~i~~R~~a~~--~~i~~~~i~~g~l~~~~~~~~~~ 289 (452)
.-+++.|++|+|||..++..+...... .+.+|+|+.--- -..++..++.... .++.......+......
T Consensus 45 ~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 118 (395)
T 3pey_A 45 RNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK------ 118 (395)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS------
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc------
Confidence 568999999999998777666655322 356788886432 2234444443321 22222222211111100
Q ss_pred HHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhcc
Q psy2891 290 SIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 290 a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~ 339 (452)
..+.++.+. |++.+...+..-.....++++||||-.+.+..
T Consensus 119 ----~~~~~iiv~-----T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~ 159 (395)
T 3pey_A 119 ----QINAQVIVG-----TPGTVLDLMRRKLMQLQKIKIFVLDEADNMLD 159 (395)
T ss_dssp ----CBCCSEEEE-----CHHHHHHHHHTTCBCCTTCCEEEEETHHHHHH
T ss_pred ----cCCCCEEEE-----cHHHHHHHHHcCCcccccCCEEEEEChhhhcC
Confidence 012344443 45566554432111122589999999998775
No 324
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.70 E-value=0.038 Score=47.92 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=27.4
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEe
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFS 250 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s 250 (452)
+++|.|.||+||||++..++.... ..|.+++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~-~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK-QKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEe
Confidence 688999999999999999988764 3577776543
No 325
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.70 E-value=0.018 Score=50.59 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=21.8
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|..++|.|+||+|||++++.++..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4667999999999999999998754
No 326
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.67 E-value=0.022 Score=51.25 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=21.5
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
..++-+++|.|+||+||||++..++..
T Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 4 SARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp ---CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 455678999999999999999988764
No 327
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=94.65 E-value=0.023 Score=55.91 Aligned_cols=39 Identities=10% Similarity=0.250 Sum_probs=33.5
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHH-----hCCCcEEEEeCCCC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAI-----ENKLPVAIFSMEMS 254 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~-----~~g~~vl~~s~E~~ 254 (452)
+.+..+..|+||||++.++|..+|. +.|.+|+.++++..
T Consensus 111 Iav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q 154 (398)
T 3ez2_A 111 IFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQ 154 (398)
T ss_dssp EEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTT
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence 5566689999999999999999985 36899999999864
No 328
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=94.65 E-value=0.093 Score=49.58 Aligned_cols=111 Identities=14% Similarity=0.096 Sum_probs=59.7
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC-CCHHHHHHHHHHHhC--CCCccccccCCCCcchHHHHHHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME-MSGIQLAMRMLGSVG--KLDQHKLRTGRLSSDDWPRINDS 290 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E-~~~~~i~~R~~a~~~--~i~~~~i~~g~l~~~~~~~~~~a 290 (452)
|.-+++.+++|+|||..++..+.. .+.+++++.-- .-..++..++..... ++....+. |..+..+ .
T Consensus 31 ~~~~lv~~~TGsGKT~~~~~~~~~----~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~ 99 (337)
T 2z0m_A 31 GKNVVVRAKTGSGKTAAYAIPILE----LGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVY-GGMPYKA------Q 99 (337)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHH----HTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEEC-TTSCHHH------H
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHh----hcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEE-CCcchHH------H
Confidence 345899999999999766555443 36789988743 223455555543222 23222222 2222211 1
Q ss_pred HHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccC
Q psy2891 291 IKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSAN 340 (452)
Q Consensus 291 ~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~ 340 (452)
...+...++.+. |++.+...+..-.....++++||||-.+.+...
T Consensus 100 ~~~~~~~~i~v~-----T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~ 144 (337)
T 2z0m_A 100 INRVRNADIVVA-----TPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEM 144 (337)
T ss_dssp HHHHTTCSEEEE-----CHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHT
T ss_pred HhhcCCCCEEEE-----CHHHHHHHHHcCCcchhhCcEEEEEChHHhhcc
Confidence 223444566664 455555433221101114789999999988653
No 329
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=94.61 E-value=0.23 Score=57.87 Aligned_cols=156 Identities=14% Similarity=0.156 Sum_probs=84.1
Q ss_pred Cccccccc----c-CCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHh----------CCCcEEEEeCCCC-HHHHHHHHH
Q psy2891 200 GFFELDKI----T-SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE----------NKLPVAIFSMEMS-GIQLAMRML 263 (452)
Q Consensus 200 g~~~LD~~----~-gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~----------~g~~vl~~s~E~~-~~~i~~R~~ 263 (452)
||+.|+.+ . -.+..++=++++||+|+|||..+.-.+++...+ .+.+|+|++---. ..++...+-
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 56666654 1 235678889999999999998776555554332 3568999974211 122333333
Q ss_pred HHh--CCCCccccccCCCCcchHHHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHH--HHcCCccEEEEcCcchhcc
Q psy2891 264 GSV--GKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLS--RQCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 264 a~~--~~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~--~~~~~~~~vvID~l~~i~~ 339 (452)
... .|+.... ..|..+.... .+....+.|. |++.+...+++.. ....++++||||-++.+..
T Consensus 156 ~~~~~~gi~V~~-~tGd~~~~~~--------~~~~~~IlVt-----TpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d 221 (1724)
T 4f92_B 156 KRLATYGITVAE-LTGDHQLCKE--------EISATQIIVC-----TPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD 221 (1724)
T ss_dssp HHHTTTTCCEEE-CCSSCSSCCT--------TGGGCSEEEE-----CHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS
T ss_pred HHHhhCCCEEEE-EECCCCCCcc--------ccCCCCEEEE-----CHHHHHHHHcCCccchhhcCcCEEEEecchhcCC
Confidence 322 2443322 3354332211 1233456664 4555443332211 0112599999999998853
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHH--HhCCcEEEEecC
Q psy2891 340 NSRGENRATEISEISRNLKGLAK--EINCPILALSQL 374 (452)
Q Consensus 340 ~~~~~~~~~~~~~i~~~Lk~lA~--~~~i~vi~l~ql 374 (452)
+|...+..+..+++...+ ..++.+|.+|-.
T Consensus 222 -----~RG~~lE~~l~rl~~~~~~~~~~~riI~LSAT 253 (1724)
T 4f92_B 222 -----DRGPVLEALVARAIRNIEMTQEDVRLIGLSAT 253 (1724)
T ss_dssp -----TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECS
T ss_pred -----ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecc
Confidence 233344445555544333 346778887744
No 330
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=94.60 E-value=0.047 Score=60.86 Aligned_cols=114 Identities=14% Similarity=0.151 Sum_probs=67.3
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC-CHHHHHHHHHHHh-CCCCccccccCCCCcchHHHHHHHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM-SGIQLAMRMLGSV-GKLDQHKLRTGRLSSDDWPRINDSI 291 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~-~~~~i~~R~~a~~-~~i~~~~i~~g~l~~~~~~~~~~a~ 291 (452)
|.-+++.|++|+|||.+++-.+...+ ..|.++++++-.- -..|+..++.... .++.... ..|..+..++.. ..
T Consensus 93 g~dvlv~ApTGSGKTl~~l~~il~~~-~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~-l~Gg~~~~er~~---~~ 167 (1104)
T 4ddu_A 93 GKSFTMVAPTGVGKTTFGMMTALWLA-RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFG-FYSSMKKEEKEK---FE 167 (1104)
T ss_dssp TCCEEECCSTTCCHHHHHHHHHHHHH-TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEE-ECTTCCTTHHHH---HH
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHHH-hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEE-EeCCCCHHHHHH---HH
Confidence 34578999999999998877777765 4678899986542 2344555554311 1222222 235555433322 12
Q ss_pred HHHhC--CCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhcc
Q psy2891 292 KKINK--SQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 292 ~~l~~--~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~ 339 (452)
..+.. .++.|. |++.+...+..+. .. ++++||||-.+.+..
T Consensus 168 ~~l~~g~~~IlV~-----Tp~rL~~~l~~l~-~~-~l~~lViDEaH~l~~ 210 (1104)
T 4ddu_A 168 KSFEEDDYHILVF-----STQFVSKNREKLS-QK-RFDFVFVDDVDAVLK 210 (1104)
T ss_dssp HHHHTSCCSEEEE-----EHHHHHHSHHHHH-TS-CCSEEEESCHHHHTT
T ss_pred HHHhCCCCCEEEE-----CHHHHHHHHHhhc-cc-CcCEEEEeCCCcccc
Confidence 23433 356654 4556655554432 22 599999999987654
No 331
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.59 E-value=0.078 Score=55.10 Aligned_cols=172 Identities=12% Similarity=0.145 Sum_probs=86.7
Q ss_pred cccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC----CCCHHHHHHHHHHHhCCCC---ccc---
Q psy2891 204 LDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM----EMSGIQLAMRMLGSVGKLD---QHK--- 273 (452)
Q Consensus 204 LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~----E~~~~~i~~R~~a~~~~i~---~~~--- 273 (452)
|+.+.--+++|+.+.|.|++|+||||++.-++.-.- .....+++.. +.+..++..+ ++....-+ ...
T Consensus 360 l~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~i~~~~~~~~~~~-i~~v~Q~~~l~~~tv~e 436 (595)
T 2yl4_A 360 FQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD--PASGTISLDGHDIRQLNPVWLRSK-IGTVSQEPILFSCSIAE 436 (595)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC--CSEEEEEETTEETTTBCHHHHHHS-EEEECSSCCCCSSBHHH
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCEEhhhCCHHHHHhc-eEEEccCCcccCCCHHH
Confidence 444433478999999999999999999887665331 1112333332 2233333221 11111100 001
Q ss_pred -cccCCCC--cchHHHHHHHHHHH------hCCC----eEEEc-CCCCCHHHHH--HHHHHHHHHcCCccEEEEcCcchh
Q psy2891 274 -LRTGRLS--SDDWPRINDSIKKI------NKSQ----LYIDE-TPSLNVIELR--ANSRRLSRQCGKIGVIIIDYLQLM 337 (452)
Q Consensus 274 -i~~g~l~--~~~~~~~~~a~~~l------~~~~----l~i~~-~~~~t~~~i~--~~i~~~~~~~~~~~~vvID~l~~i 337 (452)
+.-+... ....+++.++.+.. ...| -.+.+ ...+|-.+-. +.++.+.+ +++++++|--..
T Consensus 437 ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~---~p~illlDEpts- 512 (595)
T 2yl4_A 437 NIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLK---NPKILLLDEATS- 512 (595)
T ss_dssp HHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHH---CCSEEEEECCCS-
T ss_pred HHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHc---CCCEEEEECccc-
Confidence 1101100 01223344443332 1111 11211 1356655443 33444433 499999998532
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecC
Q psy2891 338 SANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRD 410 (452)
Q Consensus 338 ~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~ 410 (452)
+-+.. .-..+.+.|+.+.+ +.++|+++|--.. +. .||.|+.+...
T Consensus 513 -----~LD~~-~~~~i~~~l~~~~~--~~tvi~itH~~~~-------------------~~-~~d~i~~l~~G 557 (595)
T 2yl4_A 513 -----ALDAE-NEYLVQEALDRLMD--GRTVLVIAHRLST-------------------IK-NANMVAVLDQG 557 (595)
T ss_dssp -----SCCHH-HHHHHHHHHHHHHT--TSEEEEECCCHHH-------------------HH-HSSEEEEEETT
T ss_pred -----CCCHH-HHHHHHHHHHHHhc--CCEEEEEecCHHH-------------------HH-cCCEEEEEECC
Confidence 12222 23466777777765 6888888888421 33 48888888654
No 332
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.58 E-value=0.026 Score=50.58 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=25.0
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.+.+..+++|.|+||+||||.|..++...
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46777799999999999999999888654
No 333
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.54 E-value=0.044 Score=48.91 Aligned_cols=37 Identities=19% Similarity=0.314 Sum_probs=30.7
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEE
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIF 249 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~ 249 (452)
.+|-+++|.|++|+||||.+..++.... ..|.+|...
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~-~~~~~v~~~ 40 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR-ERGIEVQLT 40 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH-TTTCCEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCcccc
Confidence 4688999999999999999999988774 467888654
No 334
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.54 E-value=0.028 Score=49.40 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=22.3
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
++-+++|.|+||+||||++..++...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999888754
No 335
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.53 E-value=0.022 Score=51.96 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=22.8
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
++.+++|.|+||+||||++..++...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999988654
No 336
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=94.51 E-value=0.12 Score=52.42 Aligned_cols=113 Identities=13% Similarity=-0.036 Sum_probs=57.9
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhC--CCcEEEEeCCC-CHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIEN--KLPVAIFSMEM-SGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDS 290 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~--g~~vl~~s~E~-~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a 290 (452)
+.-+++.|++|+|||..++..+....... +.+|+|+.-.. -..++..++.......... ...+ ......
T Consensus 158 ~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~-~~~~-~~~~~~------ 229 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVK-TAFG-IKDSVP------ 229 (508)
T ss_dssp CCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCC-EEC--------------
T ss_pred CCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCee-EEEE-eCCccc------
Confidence 46789999999999987666665553322 34799887543 2345555554432211111 0000 000000
Q ss_pred HHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhcc
Q psy2891 291 IKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 291 ~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~ 339 (452)
.....+.++.+. |.+.+...+..-.....++++||||-.+.+..
T Consensus 230 ~~~~~~~~Ivv~-----T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~ 273 (508)
T 3fho_A 230 KGAKIDAQIVIG-----TPGTVMDLMKRRQLDARDIKVFVLDEADNMLD 273 (508)
T ss_dssp ---CCCCSEEEE-----CHHHHHHHHHTTCSCCTTCCEEEECCHHHHTT
T ss_pred ccccCCCCEEEE-----CHHHHHHHHHcCCccccCCCEEEEechhhhcc
Confidence 000112345553 45555544322111112589999999998864
No 337
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.51 E-value=0.02 Score=56.10 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=29.4
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHH
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGE 236 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~ 236 (452)
..|+.+.--+++|+++.|.|++|+||||++.-++-
T Consensus 35 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 35 AILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred EEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhC
Confidence 45666644689999999999999999999987764
No 338
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=94.51 E-value=0.2 Score=45.46 Aligned_cols=115 Identities=14% Similarity=-0.002 Sum_probs=58.7
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhC-----------CCcEEEEeCC-CCHHHHHHHHHHHhC--CCCccccccCCC
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIEN-----------KLPVAIFSME-MSGIQLAMRMLGSVG--KLDQHKLRTGRL 279 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~-----------g~~vl~~s~E-~~~~~i~~R~~a~~~--~i~~~~i~~g~l 279 (452)
|.-+++.+++|+|||...+-.+....... +.+++|+.-- .-..++..++..... ++....+..|.-
T Consensus 60 ~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~ 139 (253)
T 1wrb_A 60 HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGAD 139 (253)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSC
T ss_pred CCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCC
Confidence 44588999999999976554444443221 2478888642 123444444433222 222222222221
Q ss_pred CcchHHHHHHHHHHHh-CCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccC
Q psy2891 280 SSDDWPRINDSIKKIN-KSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSAN 340 (452)
Q Consensus 280 ~~~~~~~~~~a~~~l~-~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~ 340 (452)
...+. ..+. +..+.+. |++.+...+..-.....++++||||-.+.+...
T Consensus 140 ~~~~~-------~~~~~~~~Ivv~-----Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~ 189 (253)
T 1wrb_A 140 THSQI-------REVQMGCHLLVA-----TPGRLVDFIEKNKISLEFCKYIVLDEADRMLDM 189 (253)
T ss_dssp SHHHH-------HHHSSCCSEEEE-----CHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHT
T ss_pred HHHHH-------HHhCCCCCEEEE-----CHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhC
Confidence 11111 1222 2355554 455665544322111124789999999987653
No 339
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.50 E-value=0.019 Score=49.98 Aligned_cols=25 Identities=16% Similarity=0.305 Sum_probs=21.5
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
|.+++|.||+|+||||++..++...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 5689999999999999998887654
No 340
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.50 E-value=0.017 Score=53.87 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=26.9
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
.+++| ++|.|+||+|||+++..++... +.+.++++.
T Consensus 42 ~~~~G--vlL~Gp~GtGKTtLakala~~~----~~~~i~i~g 77 (274)
T 2x8a_A 42 VTPAG--VLLAGPPGCGKTLLAKAVANES----GLNFISVKG 77 (274)
T ss_dssp CCCSE--EEEESSTTSCHHHHHHHHHHHT----TCEEEEEET
T ss_pred CCCCe--EEEECCCCCcHHHHHHHHHHHc----CCCEEEEEc
Confidence 35566 9999999999999999887643 345566654
No 341
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.46 E-value=0.022 Score=54.40 Aligned_cols=35 Identities=20% Similarity=0.604 Sum_probs=27.3
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
.++.+++|.||+|+|||+++..+|... +.-++|.+
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l------~~eiIs~D 72 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHF------PLEVINSD 72 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTS------CEEEEECC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHC------CCcEEccc
Confidence 456699999999999999999887532 35566665
No 342
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.42 E-value=0.078 Score=50.74 Aligned_cols=25 Identities=16% Similarity=0.410 Sum_probs=22.4
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIA 239 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a 239 (452)
..+++.|+||+|||+++..++..+.
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eeEEEECCCCchHHHHHHHHHHHHh
Confidence 3699999999999999999998774
No 343
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.42 E-value=0.029 Score=48.97 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=22.6
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
++.+++|.|+||+||||++..++...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999888754
No 344
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.41 E-value=0.03 Score=51.57 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=31.6
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQL 258 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i 258 (452)
-++|.|+||+|||++|..++.... ..+.+++++++..-..+.
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~~-~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLSS-RWQGPFISLNCAALNENL 72 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTST-TTTSCEEEEEGGGSCHHH
T ss_pred CEEEECCCCCcHHHHHHHHHHhcC-ccCCCeEEEecCCCChhH
Confidence 588999999999999998887653 345788888765443333
No 345
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.40 E-value=0.012 Score=55.76 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=28.4
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHHH
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGE 236 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~ 236 (452)
+.|+.+.--+++|+++.|.|++|+|||||+.-++.
T Consensus 68 ~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 68 ETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp EEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTT
T ss_pred ceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHc
Confidence 34666644589999999999999999999875554
No 346
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.40 E-value=0.14 Score=54.97 Aligned_cols=41 Identities=17% Similarity=0.136 Sum_probs=29.1
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhC--CCcEEEEe
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIEN--KLPVAIFS 250 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~--g~~vl~~s 250 (452)
.+..|+.++|.|++|+|||+++-.++....... |..++++.
T Consensus 105 ~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~ 147 (773)
T 2xau_A 105 LYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQ 147 (773)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEE
T ss_pred HHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecC
Confidence 355678999999999999997666655443222 55577764
No 347
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.40 E-value=0.029 Score=51.38 Aligned_cols=38 Identities=26% Similarity=0.324 Sum_probs=28.6
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHh----CCCcEEEEeCC
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIE----NKLPVAIFSME 252 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~----~g~~vl~~s~E 252 (452)
-++.|+|+||+||||++..++...-.. .+..|++++++
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D 64 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQD 64 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecC
Confidence 379999999999999999888754221 13567777765
No 348
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.34 E-value=0.091 Score=56.17 Aligned_cols=28 Identities=29% Similarity=0.568 Sum_probs=22.1
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
|+.+..=+++.||||+|||.+|..+|..
T Consensus 507 g~~~~~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 507 GMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CCCCCSCCEEESSTTSSHHHHHHHHHHT
T ss_pred CCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 4555445899999999999988877764
No 349
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=94.32 E-value=0.024 Score=55.15 Aligned_cols=35 Identities=11% Similarity=0.291 Sum_probs=32.6
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
++++.|..|+|||+++.++|..+|. .|++|+.+++
T Consensus 4 i~~~~gkGG~GKTt~a~~la~~la~-~g~~vllvd~ 38 (374)
T 3igf_A 4 ILTFLGKSGVARTKIAIAAAKLLAS-QGKRVLLAGL 38 (374)
T ss_dssp EEEEECSBHHHHHHHHHHHHHHHHH-TTCCEEEEEC
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHH-CCCCeEEEeC
Confidence 6789999999999999999999985 7999999999
No 350
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.30 E-value=0.055 Score=53.01 Aligned_cols=48 Identities=13% Similarity=0.039 Sum_probs=38.6
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHH
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMR 261 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R 261 (452)
.+.-++|.|++|+|||+++..++.... ..|.+|+++..+.+...+...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~ 81 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY-MQGSRVIIIDPEREYKEMCRK 81 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEEESSCCSHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH-HCCCEEEEEeCCcCHHHHHHH
Confidence 455789999999999999999998875 468889999887776655544
No 351
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.30 E-value=0.02 Score=52.41 Aligned_cols=36 Identities=22% Similarity=0.486 Sum_probs=26.8
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
.+++| ++|.|+||+|||+++..++... +.+.++++.
T Consensus 47 ~~~~g--~ll~G~~G~GKTtl~~~i~~~~----~~~~i~~~~ 82 (254)
T 1ixz_A 47 RIPKG--VLLVGPPGVGKTHLARAVAGEA----RVPFITASG 82 (254)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHHT----TCCEEEEEH
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHHHh----CCCEEEeeH
Confidence 35666 8999999999999999887643 245555543
No 352
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=94.29 E-value=0.18 Score=53.13 Aligned_cols=31 Identities=23% Similarity=0.503 Sum_probs=26.3
Q ss_pred ccccccccCCCCCCcEEEEEeCCCCChhHHH
Q psy2891 201 FFELDKITSGLQPGDLIIVAGRPSMGKTAFS 231 (452)
Q Consensus 201 ~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~ 231 (452)
...|+.+.--+++|+++.|.|++|+|||||+
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHh
Confidence 3457777556899999999999999999996
No 353
>4a8j_A Elongator complex protein 4; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_A
Probab=94.29 E-value=0.014 Score=55.99 Aligned_cols=131 Identities=15% Similarity=0.127 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHHHcC-CccEEEEcCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhC--CcEEEEecCCcchhhcCCC
Q psy2891 308 NVIELRANSRRLSRQCG-KIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEIN--CPILALSQLNRSLEQRQNK 384 (452)
Q Consensus 308 t~~~i~~~i~~~~~~~~-~~~~vvID~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~--i~vi~l~ql~r~~~~r~~~ 384 (452)
....+...|++...+.. ++-.|+|=+|..-............+-.+...||.|.+.+. |.++++....-
T Consensus 199 ~y~~lL~~I~~~i~~~~~~ilRIvI~SLgSP~wy~~~~~~~~~ll~FL~~LRaLlR~~~~~~v~~iTlP~~l-------- 270 (361)
T 4a8j_A 199 PVSTILSQIEQTIKRNDKKLIRIVIPSLLHPAMYPPKMFESSEIIGLMHGVRSLVKKYYERVVLFASISIDI-------- 270 (361)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEEETTTTCTTTSCGGGGBHHHHHHHHHHHHHHHHHTTTTEEEEEEEECTT--------
T ss_pred hHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCcccCHHHHHHHHHHHHHHHhhcCCceEEEEEEChHH--------
Confidence 45677777777665432 57788998876432211111235578899999999999874 45444433221
Q ss_pred CCCchhhhhhchhhhhhceeEEEecCc---------ccccCCCCCCeEEEEEeecc----CCC--cceEEEEEEcCccce
Q psy2891 385 RPIMSDLRESGAIEQDADVILFIYRDE---------VYNQNSADKGIAEIIVSKQR----NGP--IGNIRLTFSGQYTKF 449 (452)
Q Consensus 385 ~p~l~dl~~S~~ie~~aD~vl~l~r~~---------~~~~~~~~~~~~~l~i~KnR----~G~--~g~~~l~f~~~~~~f 449 (452)
-|. .+ ...++..+|.|+.|.--. .|.......-.--|+|.|=- -|. .....+.|.-..-+|
T Consensus 271 ~~~--~l--~~rle~l~D~vi~L~pF~~~~~~~~~~~yk~~p~~~~~GLl~V~KLP~l~~~g~~~~~~~dlaFKl~Rkkf 346 (361)
T 4a8j_A 271 ITP--PL--LVLLRNMFDSVINLEPFNQEMTEFLERVYKSQPGKIQHGLVHILKLPVFTDRGEMRVLKSEWAFKNGRKKF 346 (361)
T ss_dssp SCH--HH--HHHHHHHCSEEEEEEECCHHHHHHHHHHTTTCGGGCCCEEEEEEECTTHHHHTCCCCEEEEEEEEECSSCE
T ss_pred cCh--HH--HHHHHHhCcEEEEeeecCCchhhhcccccccCcccccceEEEEEecccccccCCCCCCccceEEEecceeE
Confidence 111 12 347999999999986411 11110001123466777732 132 234578887766666
Q ss_pred e
Q psy2891 450 N 450 (452)
Q Consensus 450 ~ 450 (452)
.
T Consensus 347 ~ 347 (361)
T 4a8j_A 347 E 347 (361)
T ss_dssp E
T ss_pred E
Confidence 3
No 354
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=94.25 E-value=0.078 Score=51.68 Aligned_cols=113 Identities=16% Similarity=0.095 Sum_probs=58.4
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHh--CCCcEEEEeCCC-CHHHHHHHHHHHhC--CCCccccccCCCCcchHHHHHH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIE--NKLPVAIFSMEM-SGIQLAMRMLGSVG--KLDQHKLRTGRLSSDDWPRIND 289 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~--~g~~vl~~s~E~-~~~~i~~R~~a~~~--~i~~~~i~~g~l~~~~~~~~~~ 289 (452)
.-+++.|++|+|||..++-.+...... .+.+++|+.--- -..++..++..... ++....+ .|.....+
T Consensus 59 ~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~-~g~~~~~~------ 131 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVT-TGGTNLRD------ 131 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEE-CSSSCHHH------
T ss_pred CCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEE-eCCcchHH------
Confidence 348999999999998766666655332 355788886431 23344444433222 3332222 22222111
Q ss_pred HHHHHh-CCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhcc
Q psy2891 290 SIKKIN-KSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 290 a~~~l~-~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~ 339 (452)
....+. ..++.+. |++.+...+..-.....++++||||-.+.+..
T Consensus 132 ~~~~~~~~~~Ivv~-----T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~ 177 (400)
T 1s2m_A 132 DILRLNETVHILVG-----TPGRVLDLASRKVADLSDCSLFIMDEADKMLS 177 (400)
T ss_dssp HHHHTTSCCSEEEE-----CHHHHHHHHHTTCSCCTTCCEEEEESHHHHSS
T ss_pred HHHHhcCCCCEEEE-----chHHHHHHHHhCCcccccCCEEEEeCchHhhh
Confidence 111122 2355554 45555544332111112579999999987653
No 355
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.25 E-value=0.12 Score=55.52 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=24.8
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.+|++++|.||+|+|||||+.+++.-.
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 689999999999999999999998754
No 356
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.24 E-value=0.042 Score=49.53 Aligned_cols=40 Identities=18% Similarity=0.216 Sum_probs=28.7
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhC----CCcEEEEe
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIEN----KLPVAIFS 250 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~----g~~vl~~s 250 (452)
-+.+|-+++|.|++|+||||.+..++..... . |.+|.+..
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~-~~~~~g~~v~~~r 64 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRLQE-RLGPAGRHVVVTR 64 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHHHH-HHGGGTCCEEEEE
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHHHh-hccccceeeeeec
Confidence 3567899999999999999999999887743 4 78886543
No 357
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=94.22 E-value=0.18 Score=53.10 Aligned_cols=32 Identities=19% Similarity=0.437 Sum_probs=25.9
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNI 234 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~i 234 (452)
.|+.+.--+++|+++.|.|++|+|||||+.-+
T Consensus 337 ~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 337 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHHTTT
T ss_pred ccccceeEecCCCEEEEEeeCCCCHHHHHHHH
Confidence 45555445889999999999999999998543
No 358
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.21 E-value=0.035 Score=49.89 Aligned_cols=43 Identities=19% Similarity=0.135 Sum_probs=33.9
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS 254 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~ 254 (452)
.+|-++++.|.+|+||||++..++.......|.+|.+++-|-.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~ 61 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG 61 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCC
Confidence 3578999999999999999999998875315778887555533
No 359
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=94.21 E-value=0.11 Score=50.23 Aligned_cols=113 Identities=13% Similarity=0.083 Sum_probs=59.6
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHh--CCCcEEEEeCC-CCHHHHHHHHHHHhC--CCCccccccCCCCcchHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIE--NKLPVAIFSME-MSGIQLAMRMLGSVG--KLDQHKLRTGRLSSDDWPRINDS 290 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~--~g~~vl~~s~E-~~~~~i~~R~~a~~~--~i~~~~i~~g~l~~~~~~~~~~a 290 (452)
-+++.+++|+|||..++-.+...... .+.+++|++-- .-..++..++..... ++....+ .|..+..+.
T Consensus 60 ~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~-~g~~~~~~~------ 132 (394)
T 1fuu_A 60 DVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHAC-IGGTSFVED------ 132 (394)
T ss_dssp CEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEE-CSSCCHHHH------
T ss_pred CEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEE-eCCCchHHH------
Confidence 37899999999997655555444322 35688888643 223444444443322 2332222 232222111
Q ss_pred HHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccC
Q psy2891 291 IKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSAN 340 (452)
Q Consensus 291 ~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~ 340 (452)
...+.+.++.+. |++.+...+..-.....++++||||-.+.+...
T Consensus 133 ~~~~~~~~i~v~-----T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~ 177 (394)
T 1fuu_A 133 AEGLRDAQIVVG-----TPGRVFDNIQRRRFRTDKIKMFILDEADEMLSS 177 (394)
T ss_dssp HHHHHHCSEEEE-----CHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHT
T ss_pred HhhcCCCCEEEE-----CHHHHHHHHHhCCcchhhCcEEEEEChHHhhCC
Confidence 112234566664 455555544321111125899999999987643
No 360
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.20 E-value=0.051 Score=50.23 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=26.7
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
..-++|.|+||+|||++|..++... +.+++++++
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~----~~~~~~i~~ 97 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEES----NFPFIKICS 97 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH----TCSEEEEEC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHh----CCCEEEEeC
Confidence 3468999999999999999888763 466666653
No 361
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.19 E-value=0.053 Score=54.35 Aligned_cols=40 Identities=30% Similarity=0.537 Sum_probs=29.3
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
|..++.-+++.|+||+|||++|..+|.... .+.++++++.
T Consensus 59 ~~~~~~~iLl~GppGtGKT~la~ala~~l~--~~~~~~~~~~ 98 (456)
T 2c9o_A 59 KKMAGRAVLLAGPPGTGKTALALAIAQELG--SKVPFCPMVG 98 (456)
T ss_dssp TCCTTCEEEEECCTTSSHHHHHHHHHHHHC--TTSCEEEEEG
T ss_pred CCCCCCeEEEECCCcCCHHHHHHHHHHHhC--CCceEEEEeH
Confidence 333444589999999999999999888752 2356666653
No 362
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.18 E-value=0.02 Score=53.72 Aligned_cols=34 Identities=32% Similarity=0.456 Sum_probs=28.3
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGE 236 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~ 236 (452)
.|+.+.--+.+|+++.|.|++|+|||||+.-++-
T Consensus 53 vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTT
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 4666644689999999999999999999887654
No 363
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.16 E-value=0.12 Score=53.39 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=26.5
Q ss_pred cccccCCCCCCcEEEEEeCCCCChhHHHHHHHH
Q psy2891 204 LDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGE 236 (452)
Q Consensus 204 LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~ 236 (452)
|+.+.--+++|+.+.|.|++|+||||++.-++.
T Consensus 357 l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 357 LKDINLSIEKGETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHTTTTT
T ss_pred eeeeEEEECCCCEEEEECCCCChHHHHHHHHhc
Confidence 455434578999999999999999999875554
No 364
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.13 E-value=0.03 Score=48.38 Aligned_cols=23 Identities=17% Similarity=0.450 Sum_probs=20.5
Q ss_pred EEEEEeCCCCChhHHHHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
+++|.|+||+||||++..++...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999988754
No 365
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.12 E-value=0.032 Score=49.76 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=22.4
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
+|-.++|.|+||+||||++..++...
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999888764
No 366
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=94.11 E-value=0.19 Score=49.11 Aligned_cols=113 Identities=16% Similarity=0.088 Sum_probs=59.5
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHH--hCCCcEEEEeCCC-CHHHHHHHHHHHhC--CCCccccccCCCCcchHHHHHH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAI--ENKLPVAIFSMEM-SGIQLAMRMLGSVG--KLDQHKLRTGRLSSDDWPRIND 289 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~--~~g~~vl~~s~E~-~~~~i~~R~~a~~~--~i~~~~i~~g~l~~~~~~~~~~ 289 (452)
.-+++.+++|+|||...+-.+..... ..+.++++++--- -..++..++..... ++....+. |.....++
T Consensus 75 ~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~-g~~~~~~~----- 148 (410)
T 2j0s_A 75 RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACI-GGTNVGED----- 148 (410)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEEC-TTSCHHHH-----
T ss_pred CCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEE-CCCCHHHH-----
Confidence 44899999999999766655554432 2457899887431 23444454443222 22222222 22221111
Q ss_pred HHHHH-hCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhcc
Q psy2891 290 SIKKI-NKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 290 a~~~l-~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~ 339 (452)
...+ .+.++.+. |++.+...+..-.....++++||||-.+.+..
T Consensus 149 -~~~~~~~~~ivv~-----Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~ 193 (410)
T 2j0s_A 149 -IRKLDYGQHVVAG-----TPGRVFDMIRRRSLRTRAIKMLVLDEADEMLN 193 (410)
T ss_dssp -HHHHHHCCSEEEE-----CHHHHHHHHHTTSSCCTTCCEEEEETHHHHTS
T ss_pred -HHHhhcCCCEEEc-----CHHHHHHHHHhCCccHhheeEEEEccHHHHHh
Confidence 1122 23355553 45566554433111112589999999998764
No 367
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.11 E-value=0.038 Score=54.65 Aligned_cols=37 Identities=16% Similarity=0.252 Sum_probs=29.2
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEE
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIF 249 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~ 249 (452)
.+|++++|.|++|+||||++..++..... ....|.++
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~-~~g~I~~~ 201 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNS-SERNILTV 201 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC-TTSCEEEE
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCC-CCCEEEEe
Confidence 68999999999999999999888776532 33456665
No 368
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=94.06 E-value=0.025 Score=50.46 Aligned_cols=114 Identities=14% Similarity=0.096 Sum_probs=56.1
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHh--CCCcEEEEeCC-CCHHHHHHHHHHHhC------CCCccccccCCCCcchHH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIE--NKLPVAIFSME-MSGIQLAMRMLGSVG------KLDQHKLRTGRLSSDDWP 285 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~--~g~~vl~~s~E-~~~~~i~~R~~a~~~------~i~~~~i~~g~l~~~~~~ 285 (452)
.-+++.+++|+|||...+-.+...... .+.+++|++-- .-..++..++..... ++....+. |..+ ..
T Consensus 42 ~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~-g~~~---~~ 117 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLI-GGTD---KQ 117 (219)
T ss_dssp CCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEEC-CCSH---HH
T ss_pred CCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEe-CCCC---HH
Confidence 347899999999997655555544322 24678888642 122344444433222 22221111 2111 10
Q ss_pred HHHHHHHHHh-CCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccC
Q psy2891 286 RINDSIKKIN-KSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSAN 340 (452)
Q Consensus 286 ~~~~a~~~l~-~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~ 340 (452)
...+.+. +..+.+. |++.+...+..-.....++++||||-.+.+...
T Consensus 118 ---~~~~~~~~~~~Iiv~-----Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~ 165 (219)
T 1q0u_A 118 ---KALEKLNVQPHIVIG-----TPGRINDFIREQALDVHTAHILVVDEADLMLDM 165 (219)
T ss_dssp ---HTTCCCSSCCSEEEE-----CHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHT
T ss_pred ---HHHHHcCCCCCEEEe-----CHHHHHHHHHcCCCCcCcceEEEEcCchHHhhh
Confidence 0001111 1234443 455665544321101114789999999988653
No 369
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.05 E-value=0.024 Score=50.50 Aligned_cols=33 Identities=18% Similarity=0.370 Sum_probs=27.1
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCC
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENK 243 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g 243 (452)
++.+|+++.|.|++|+|||||+.-++-- .-..|
T Consensus 18 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G 50 (208)
T 3b85_A 18 AIDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSK 50 (208)
T ss_dssp HHHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTT
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCC
Confidence 3688999999999999999999888765 43344
No 370
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.04 E-value=0.032 Score=47.76 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=20.2
Q ss_pred EEEEEeCCCCChhHHHHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.++|.|+||+||||++..++...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999998654
No 371
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=94.02 E-value=0.14 Score=46.25 Aligned_cols=50 Identities=12% Similarity=-0.024 Sum_probs=30.0
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHh---CCCcEEEEeCCC-CHHHHHHHHHH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIE---NKLPVAIFSMEM-SGIQLAMRMLG 264 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~---~g~~vl~~s~E~-~~~~i~~R~~a 264 (452)
.-+++.|++|+|||...+-.+...... .+.+++|+.--- -..++..++..
T Consensus 67 ~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 120 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIK 120 (245)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHH
Confidence 448999999999997644444443322 355788886432 23444444443
No 372
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.01 E-value=0.035 Score=52.12 Aligned_cols=39 Identities=10% Similarity=0.162 Sum_probs=28.0
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM 253 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~ 253 (452)
+-++.|+|++|+||||++..++...-. .+..+.+++++.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~-~~~~~~vI~~D~ 43 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRR-EGVKAVSIEGDA 43 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHH-HTCCEEEEEGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhh-cCCCeeEeecch
Confidence 458999999999999999999876532 356788888664
No 373
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=94.01 E-value=0.2 Score=52.69 Aligned_cols=54 Identities=20% Similarity=0.234 Sum_probs=38.0
Q ss_pred CCcEEEEEeCCCCChhHH-HHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCC
Q psy2891 213 PGDLIIVAGRPSMGKTAF-SLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLD 270 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~-~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~ 270 (452)
.|.-+++.|++|+|||.. ++.++..+. ..+.+++|++ +..+++..+.....+..
T Consensus 240 ~g~dvlv~apTGSGKTl~~ll~il~~l~-~~~~~~lila---PTr~La~Q~~~~l~~~~ 294 (673)
T 2wv9_A 240 KRQLTVLDLHPGAGKTRRILPQIIKDAI-QKRLRTAVLA---PTRVVAAEMAEALRGLP 294 (673)
T ss_dssp TTCEEEECCCTTTTTTTTHHHHHHHHHH-HTTCCEEEEE---SSHHHHHHHHHHTTTSC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHH-hCCCcEEEEc---cHHHHHHHHHHHHhcCC
Confidence 788999999999999986 455554443 4677899987 44556666555444443
No 374
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.00 E-value=0.037 Score=49.47 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=22.2
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
++.+++|.|+||+||||++..++...
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999988754
No 375
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.96 E-value=0.066 Score=55.33 Aligned_cols=39 Identities=18% Similarity=0.333 Sum_probs=33.2
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
.+.+++|.|+||+|||+++..++..+. ..|.+|++.+.-
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~-~~g~~Vl~~ApT 241 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAE-SLGLEVGLCAPT 241 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEEESS
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHH-hcCCeEEEecCc
Confidence 467999999999999999999887775 478999988763
No 376
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.95 E-value=0.036 Score=48.46 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.7
Q ss_pred EEEEEeCCCCChhHHHHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
+++|.|+||+||||++..++...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999998765
No 377
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.93 E-value=0.039 Score=47.71 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.+++|.|+||+||||++..++...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999887653
No 378
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.90 E-value=0.036 Score=50.83 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=23.4
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.+|.++.|.|++|+||||++.-++..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 67899999999999999999988754
No 379
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.89 E-value=0.055 Score=51.51 Aligned_cols=110 Identities=18% Similarity=0.266 Sum_probs=58.3
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHH-hCCCcEEEEeCCC---CHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAI-ENKLPVAIFSMEM---SGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSI 291 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~-~~g~~vl~~s~E~---~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~ 291 (452)
++.|+|++|+|||||+..++..... ..+..|.+++.+. +...+..+ +.- -..|....-+...+.+.+
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~------~~~---~~~g~P~~~D~~~l~~~L 164 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQ------GLM---KRKGFPESYDMPSLLRVL 164 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHT------TCG---GGTTSGGGBCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhH------HHH---hhccCcccccHHHHHHHH
Confidence 8999999999999999877665421 1245688888775 23322111 110 011222223555666666
Q ss_pred HHHhCC--CeEE--EcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccC
Q psy2891 292 KKINKS--QLYI--DETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSAN 340 (452)
Q Consensus 292 ~~l~~~--~l~i--~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~ 340 (452)
..+... .+.+ .+...... +.. ...... .+++|||+.+..+...
T Consensus 165 ~~L~~g~~~v~~P~yd~~~~~r--~~~---~~~~v~-~~dIVIvEGi~lL~~~ 211 (321)
T 3tqc_A 165 NAIKSGQRNVRIPVYSHHYYDI--VRG---QYEIVD-QPDIVILEGLNILQTG 211 (321)
T ss_dssp HHHHTTCSSEEEEEEETTTTEE--EEE---EEEEEC-SCSEEEEECTTTTCCC
T ss_pred Hhhhccccccccchhhhhcccc--ccC---ceeecc-CCCEEEEEcccccccc
Confidence 666543 3332 22111100 000 000112 4899999998877654
No 380
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.87 E-value=0.15 Score=58.06 Aligned_cols=34 Identities=15% Similarity=0.238 Sum_probs=27.3
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGE 236 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~ 236 (452)
.|+.+.--+++|+++.|.|++|+||||++.-+..
T Consensus 433 vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~ 466 (1321)
T 4f4c_A 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLR 466 (1321)
T ss_dssp SEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTT
T ss_pred eeeceEEeecCCcEEEEEecCCCcHHHHHHHhcc
Confidence 3555544589999999999999999999875553
No 381
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=93.87 E-value=0.074 Score=53.36 Aligned_cols=57 Identities=19% Similarity=0.233 Sum_probs=41.2
Q ss_pred CCCCcEEEEEeCCCCChhHH-HHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCCc
Q psy2891 211 LQPGDLIIVAGRPSMGKTAF-SLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQ 271 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~-~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~~ 271 (452)
+..|..+++.|++|+|||.. ++.++..+. ..+.+++|++ +..+++..+.....|.+.
T Consensus 18 l~~~~~vlv~a~TGsGKT~~~~l~il~~~~-~~~~~~lvl~---Ptr~La~Q~~~~l~g~~v 75 (459)
T 2z83_A 18 LRKRQMTVLDLHPGSGKTRKILPQIIKDAI-QQRLRTAVLA---PTRVVAAEMAEALRGLPV 75 (459)
T ss_dssp GSTTCEEEECCCTTSCTTTTHHHHHHHHHH-HTTCCEEEEE---CSHHHHHHHHHHTTTSCE
T ss_pred HhcCCcEEEECCCCCCHHHHHHHHHHHHHH-hCCCcEEEEC---chHHHHHHHHHHhcCceE
Confidence 66788999999999999985 566665554 4678899987 445566666555555544
No 382
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.86 E-value=0.057 Score=56.46 Aligned_cols=50 Identities=28% Similarity=0.325 Sum_probs=39.1
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCH-HHHHHHHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSG-IQLAMRML 263 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~-~~i~~R~~ 263 (452)
+.+++|.|+||+|||+++..++..+....+.+|++.+.-... +++..|+.
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHH
Confidence 458999999999999999999988764357889998775444 55666664
No 383
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.85 E-value=0.067 Score=57.51 Aligned_cols=51 Identities=24% Similarity=0.266 Sum_probs=40.7
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCH-HHHHHHHHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSG-IQLAMRMLG 264 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~-~~i~~R~~a 264 (452)
+.+++|.|+||+|||+++..++..+....+.+|+..+.-... +++..|+..
T Consensus 375 ~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 375 RPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHh
Confidence 568999999999999999999887764357889998776544 667777764
No 384
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.84 E-value=0.037 Score=55.51 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=27.1
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCC
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENK 243 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g 243 (452)
+.+|+.+.|.|++|+|||||+.-++--.....|
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G 167 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNA 167 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence 679999999999999999999887765543345
No 385
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.79 E-value=0.23 Score=50.80 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=23.3
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGE 236 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~ 236 (452)
.++|+++.|.|++|+|||||+.-++-
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhc
Confidence 56899999999999999999887665
No 386
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.78 E-value=0.044 Score=49.94 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=22.0
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
++-.++|.|+||+||||++..++...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999988654
No 387
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.76 E-value=0.047 Score=47.75 Aligned_cols=29 Identities=21% Similarity=0.412 Sum_probs=25.1
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCC
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENK 243 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g 243 (452)
|+.+.|.|++|+||||++.-++.... ..|
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G 29 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG 29 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC
Confidence 67899999999999999998888775 555
No 388
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.73 E-value=0.019 Score=50.89 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=27.1
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEe
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFS 250 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s 250 (452)
+++|.|++|+||||++..++.... ..|.+|.++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~-~~g~~v~~~~ 35 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR-AAGRSVATLA 35 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH-EEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH-hcCCeEEEEe
Confidence 689999999999999999988774 2456666553
No 389
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=93.71 E-value=0.056 Score=54.71 Aligned_cols=37 Identities=22% Similarity=0.475 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
.+++| ++|.|+||+|||+++..++... +.+.++++..
T Consensus 62 ~ip~G--vLL~GppGtGKTtLaraIa~~~----~~~~i~i~g~ 98 (499)
T 2dhr_A 62 RIPKG--VLLVGPPGVGKTHLARAVAGEA----RVPFITASGS 98 (499)
T ss_dssp CCCSE--EEEECSSSSSHHHHHHHHHHHT----TCCEEEEEGG
T ss_pred CCCce--EEEECCCCCCHHHHHHHHHHHh----CCCEEEEehh
Confidence 45666 8999999999999999887643 4677888763
No 390
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.71 E-value=0.29 Score=50.37 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=32.6
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHhCC-CcEEEEeCC
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIENK-LPVAIFSME 252 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g-~~vl~~s~E 252 (452)
++|.+++|.|.||+||||++..++..... .| .++.+++.+
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~-~G~~~~~~lD~D 434 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQ-QGGRSVSLLLGD 434 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHH-HCSSCEEEEEHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcc-cCCceEEEECcH
Confidence 46779999999999999999999988753 35 778888743
No 391
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.70 E-value=0.034 Score=57.07 Aligned_cols=43 Identities=12% Similarity=0.187 Sum_probs=33.5
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
-+.+|++++|.|++|+||||++..++.......|..+.|+..+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD 407 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGD 407 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCc
Confidence 4678999999999999999999998887643233457666553
No 392
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.70 E-value=0.068 Score=47.44 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=30.6
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS 254 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~ 254 (452)
.++|.|++|+|||||+..++.... ...++..++.+..
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~~--~~~~~~~i~~d~~ 68 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERIG--NEVKIGAMLGDVV 68 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHT--TTSCEEEEECSCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhc--cCCeEEEEecCCC
Confidence 688999999999999999998763 2367888887765
No 393
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.69 E-value=0.037 Score=52.28 Aligned_cols=33 Identities=21% Similarity=0.389 Sum_probs=25.7
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
+.+++|+||+|+|||+++..+|... +..++|.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~------~~~iis~D 35 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL------NGEVISGD 35 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT------TEEEEECC
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC------ccceeecC
Confidence 4589999999999999999887542 35566664
No 394
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.69 E-value=0.1 Score=46.45 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=30.4
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCCC-cEEEEeCC
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENKL-PVAIFSME 252 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~-~vl~~s~E 252 (452)
+|-++++.|.+|+||||.+..++.... ..|. .|. ++-|
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~-~~~~~~v~-~~re 40 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE-QLGIRDMV-FTRE 40 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH-HTTCCCEE-EEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCCcce-eeeC
Confidence 478999999999999999999988774 4676 554 4455
No 395
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=93.68 E-value=0.34 Score=50.47 Aligned_cols=57 Identities=21% Similarity=0.184 Sum_probs=42.1
Q ss_pred CCCCCcEEEEEeCCCCChhHH-HHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhCCCC
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAF-SLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLD 270 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~-~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~~a~~~~i~ 270 (452)
-+..|.-+++.|++|+|||.. ++.++..+. ..+.+++|++ +..+++..+.....+..
T Consensus 182 ~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~-~~~~~vLvl~---PtreLa~Qi~~~l~~~~ 239 (618)
T 2whx_A 182 IFRKKRLTIMDLHPGAGKTKRILPSIVREAL-KRRLRTLILA---PTRVVAAEMEEALRGLP 239 (618)
T ss_dssp GGSTTCEEEECCCTTSSTTTTHHHHHHHHHH-HTTCCEEEEE---SSHHHHHHHHHHTTTSC
T ss_pred HHhcCCeEEEEcCCCCCHHHHHHHHHHHHHH-hCCCeEEEEc---ChHHHHHHHHHHhcCCc
Confidence 356788999999999999984 677777765 3677899987 45666666665544444
No 396
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.68 E-value=0.046 Score=47.97 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=20.7
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
..+++|.|+||+||||++..++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999888754
No 397
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=93.68 E-value=0.28 Score=48.59 Aligned_cols=114 Identities=19% Similarity=0.113 Sum_probs=59.2
Q ss_pred CcEEEEEeCCCCChhH-HHHHHHHHHHHh------CCCcEEEEeCC-CCHHHHHHHHHHHh--CCCCccccccCCCCcch
Q psy2891 214 GDLIIVAGRPSMGKTA-FSLNIGEHIAIE------NKLPVAIFSME-MSGIQLAMRMLGSV--GKLDQHKLRTGRLSSDD 283 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~-~~l~ia~~~a~~------~g~~vl~~s~E-~~~~~i~~R~~a~~--~~i~~~~i~~g~l~~~~ 283 (452)
|.-+++.|++|+|||. |++-+..++... .+.++++++-- .-..++..++.... .++....+ .|..+..+
T Consensus 93 g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~-~gg~~~~~ 171 (434)
T 2db3_A 93 GRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIV-YGGTSFRH 171 (434)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEE-CTTSCHHH
T ss_pred CCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEE-ECCCCHHH
Confidence 3458999999999997 444444444321 14578888642 12334444443322 22222222 23322211
Q ss_pred HHHHHHHHHHHh-CCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhcc
Q psy2891 284 WPRINDSIKKIN-KSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 284 ~~~~~~a~~~l~-~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~ 339 (452)
. ...+. +..+.|. |++.+...+.+-.....++++||||-.+.|..
T Consensus 172 ~------~~~l~~~~~Ivv~-----Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~ 217 (434)
T 2db3_A 172 Q------NECITRGCHVVIA-----TPGRLLDFVDRTFITFEDTRFVVLDEADRMLD 217 (434)
T ss_dssp H------HHHHTTCCSEEEE-----CHHHHHHHHHTTSCCCTTCCEEEEETHHHHTS
T ss_pred H------HHHhhcCCCEEEE-----ChHHHHHHHHhCCcccccCCeEEEccHhhhhc
Confidence 1 11232 3456654 45666554432211122589999999998765
No 398
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.67 E-value=0.031 Score=51.93 Aligned_cols=36 Identities=22% Similarity=0.486 Sum_probs=26.9
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
.+++| ++|.|+||+|||+++..++... +.+.++++.
T Consensus 71 ~~~~g--vll~Gp~GtGKTtl~~~i~~~~----~~~~i~~~~ 106 (278)
T 1iy2_A 71 RIPKG--VLLVGPPGVGKTHLARAVAGEA----RVPFITASG 106 (278)
T ss_dssp CCCCE--EEEECCTTSSHHHHHHHHHHHT----TCCEEEEEH
T ss_pred CCCCe--EEEECCCcChHHHHHHHHHHHc----CCCEEEecH
Confidence 35666 8999999999999999887643 245565553
No 399
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.67 E-value=0.046 Score=51.30 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=29.4
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHhCC--Cc-EEEEeCCC
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIENK--LP-VAIFSMEM 253 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g--~~-vl~~s~E~ 253 (452)
.++.++.|+|++|+|||||+..++..... .| .+ +.+++.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~-~g~~~~~~~iv~~D~ 72 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME-KYGGEKSIGYASIDD 72 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH-HHGGGSCEEEEEGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh-cCCCCceEEEecccc
Confidence 35679999999999999999988877643 12 23 44436663
No 400
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=93.66 E-value=0.13 Score=52.18 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=47.4
Q ss_pred cccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHH
Q psy2891 195 TGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMR 261 (452)
Q Consensus 195 ~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R 261 (452)
..+.||+..+|-+. .+.+|+=..|.|++|+|||+++.+++.+. ...-++|.-.....+++.+=
T Consensus 209 epl~TGirvID~l~-PigkGqr~~I~g~~g~GKT~L~~~ia~~~---~~~~~V~~~iGER~~Ev~e~ 271 (588)
T 3mfy_A 209 VPLITGQRVIDTFF-PQAKGGTAAIPGPAGSGKTVTQHQLAKWS---DAQVVIYIGCGERGNEMTDV 271 (588)
T ss_dssp SEECCSCHHHHHHS-CEETTCEEEECSCCSHHHHHHHHHHHHHS---SCSEEEEEECCSSSSHHHHH
T ss_pred cccccCcchhhccC-CcccCCeEEeecCCCCCHHHHHHHHHhcc---CCCEEEEEEecccHHHHHHH
Confidence 46789999999864 57899999999999999999999876542 23356676665555555443
No 401
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.66 E-value=0.039 Score=46.94 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=20.5
Q ss_pred EEEEEeCCCCChhHHHHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
+++|.|+||+||||++..++...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999888754
No 402
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.62 E-value=0.051 Score=48.47 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=22.1
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIA 239 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a 239 (452)
..++|.|+||+|||+++..++....
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3789999999999999999987764
No 403
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=93.60 E-value=0.026 Score=55.68 Aligned_cols=39 Identities=10% Similarity=0.336 Sum_probs=25.3
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHH-----hCCCcEEEEeCCCC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAI-----ENKLPVAIFSMEMS 254 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~-----~~g~~vl~~s~E~~ 254 (452)
+.+..|..|+||||++.++|..+|. +.|.+|+++.++..
T Consensus 114 Iav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~ 157 (403)
T 3ez9_A 114 IFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQ 157 (403)
T ss_dssp EEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSS
T ss_pred EEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence 5566699999999999999999873 36899999999853
No 404
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.60 E-value=0.021 Score=52.33 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=28.1
Q ss_pred ccccccCCCCC---CcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 203 ELDKITSGLQP---GDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 203 ~LD~~~gG~~~---G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.|+.+.--+.+ |..++|.|++|+||||++..++...
T Consensus 34 ~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 34 ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 34444334566 9999999999999999999888754
No 405
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.56 E-value=0.047 Score=48.43 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=19.8
Q ss_pred EEEEEeCCCCChhHHHHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.++|.|+||+||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999887654
No 406
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.51 E-value=0.027 Score=54.74 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=25.3
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
-+++|++++|.|++|+||||++.-++...
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred HHhcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 46799999999999999999998877654
No 407
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.51 E-value=0.03 Score=51.79 Aligned_cols=34 Identities=26% Similarity=0.431 Sum_probs=28.1
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.|+.+.--+. |+++.|.|++|+|||||+.-++--
T Consensus 20 il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 20 SLENINLEVN-GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred eEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCC
Confidence 4666644589 999999999999999999877653
No 408
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=93.45 E-value=0.3 Score=53.89 Aligned_cols=111 Identities=18% Similarity=0.126 Sum_probs=63.8
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC-CHHHHHHHHHHHhCCCCccccccCCCCcchHHHHHH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM-SGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRIND 289 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~-~~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~ 289 (452)
+..|.-+++.|++|+|||..+.-.+... ...|.+++|++--- -..++..++.....++....+ .|..+..
T Consensus 51 il~g~~vlv~apTGsGKTlv~~~~i~~~-~~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l-~G~~~~~------- 121 (997)
T 4a4z_A 51 LEQGDSVFVAAHTSAGKTVVAEYAIAMA-HRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLI-TGDVQIN------- 121 (997)
T ss_dssp HHTTCEEEEECCTTSCSHHHHHHHHHHH-HHTTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEE-CSSCEEC-------
T ss_pred HHcCCCEEEEECCCCcHHHHHHHHHHHH-HhcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEE-eCCCccC-------
Confidence 4456789999999999997655444444 35678899987643 345666666544334444332 2322211
Q ss_pred HHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhccC
Q psy2891 290 SIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSAN 340 (452)
Q Consensus 290 a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~~ 340 (452)
.+.++.+. |++.+.+.+..-.....++++||||-.+.+...
T Consensus 122 -----~~~~IlV~-----Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~ 162 (997)
T 4a4z_A 122 -----PDANCLIM-----TTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQ 162 (997)
T ss_dssp -----TTSSEEEE-----EHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTT
T ss_pred -----CCCCEEEE-----CHHHHHHHHHhCchhhcCCCEEEEECccccccc
Confidence 11244443 455565544322111114899999999977654
No 409
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.45 E-value=0.059 Score=48.12 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=21.3
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
+..+.|.|+||+||||++.-++...
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999887643
No 410
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.44 E-value=0.033 Score=55.05 Aligned_cols=33 Identities=15% Similarity=0.264 Sum_probs=27.1
Q ss_pred cccccCCCCCCcE--EEEEeCCCCChhHHHHHHHH
Q psy2891 204 LDKITSGLQPGDL--IIVAGRPSMGKTAFSLNIGE 236 (452)
Q Consensus 204 LD~~~gG~~~G~l--~~i~g~pg~GKT~~~l~ia~ 236 (452)
|+.+.--+++|++ +.|.|++|+|||||+..++.
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhC
Confidence 6666456899999 99999999999999887764
No 411
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=93.43 E-value=0.17 Score=57.36 Aligned_cols=34 Identities=15% Similarity=0.273 Sum_probs=27.5
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGE 236 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~ 236 (452)
.|+.+.--+++|+.+.|.|++|+||||++.-++.
T Consensus 405 vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g 438 (1284)
T 3g5u_A 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQR 438 (1284)
T ss_dssp SEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTT
T ss_pred ceecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4555544589999999999999999999876654
No 412
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.41 E-value=0.055 Score=45.89 Aligned_cols=24 Identities=17% Similarity=0.408 Sum_probs=21.1
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
+.++|.|.||+||||++..++...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999887654
No 413
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.41 E-value=0.035 Score=55.33 Aligned_cols=65 Identities=15% Similarity=0.253 Sum_probs=48.9
Q ss_pred cccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhC---CCcEEEEeCCCCHHHHHH
Q psy2891 195 TGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIEN---KLPVAIFSMEMSGIQLAM 260 (452)
Q Consensus 195 ~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~---g~~vl~~s~E~~~~~i~~ 260 (452)
..+.||+..+|-+. .+.+|+=..|.|++|+|||+++.++|.+....+ +..++|.-..+..+++.+
T Consensus 134 e~l~TGir~ID~l~-pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e 201 (469)
T 2c61_A 134 DFIQTGISTIDGTN-TLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQY 201 (469)
T ss_dssp SBCBCSCHHHHTTS-CCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHH
T ss_pred cccceeeEeeeeee-ccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHH
Confidence 46899999999874 577888888999999999999999998764321 234677666666655443
No 414
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.40 E-value=0.046 Score=52.30 Aligned_cols=32 Identities=28% Similarity=0.478 Sum_probs=25.8
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
.+++|+|++|+|||+|+..++... + +.++|.+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l----~--~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF----N--GEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT----T--EEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc----C--Cceeccc
Confidence 389999999999999999988653 2 5667765
No 415
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=93.40 E-value=0.22 Score=49.88 Aligned_cols=96 Identities=16% Similarity=0.102 Sum_probs=58.3
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC-CCHHHHHHHHHHHhCCCC-ccccccCCCCcchHHHHHHHHH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME-MSGIQLAMRMLGSVGKLD-QHKLRTGRLSSDDWPRINDSIK 292 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E-~~~~~i~~R~~a~~~~i~-~~~i~~g~l~~~~~~~~~~a~~ 292 (452)
.-++|++++|+|||..++..+... +.+|+++.-. .-..++..++.. .+++ .. +..|....
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~----~~~~Lvl~P~~~L~~Q~~~~~~~--~~~~~v~-~~~g~~~~----------- 170 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGI--FGEEYVG-EFSGRIKE----------- 170 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHH----CSCEEEEESSHHHHHHHHHHGGG--GCGGGEE-EBSSSCBC-----------
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEECCHHHHHHHHHHHHh--CCCcceE-EECCCcCC-----------
Confidence 348999999999999888776654 5789998766 344556666544 2443 22 22232221
Q ss_pred HHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhcc
Q psy2891 293 KINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 293 ~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~ 339 (452)
..++.|. |.+.+...+..+. . ++++||||-.+.+..
T Consensus 171 ---~~~Ivv~-----T~~~l~~~~~~~~--~-~~~liIvDEaH~~~~ 206 (472)
T 2fwr_A 171 ---LKPLTVS-----TYDSAYVNAEKLG--N-RFMLLIFDEVHHLPA 206 (472)
T ss_dssp ---CCSEEEE-----EHHHHHHTHHHHT--T-TCSEEEEETGGGTTS
T ss_pred ---cCCEEEE-----EcHHHHHHHHHhc--C-CCCEEEEECCcCCCC
Confidence 1245443 3344444333221 2 489999999998764
No 416
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.34 E-value=0.063 Score=48.38 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=22.5
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
++..++|.|+||+||||++..++...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999998764
No 417
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.32 E-value=0.045 Score=49.34 Aligned_cols=35 Identities=14% Similarity=0.199 Sum_probs=27.8
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEE
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIF 249 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~ 249 (452)
...+|.++.|.|+.|+||||++..++.. +..|.+.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~-----~g~v~~~ 50 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY-----KNDICLL 50 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG-----TTTEEEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc-----cCCeEEE
Confidence 4678999999999999999998876653 3456654
No 418
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.30 E-value=0.046 Score=47.65 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=19.3
Q ss_pred EEEEEeCCCCChhHHHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
+++|+||+|+||||++..+...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999887654
No 419
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.29 E-value=0.092 Score=50.21 Aligned_cols=24 Identities=33% Similarity=0.675 Sum_probs=21.2
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
+.++|.|+||+|||+++.-++...
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 468999999999999999888765
No 420
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.28 E-value=0.071 Score=51.83 Aligned_cols=34 Identities=26% Similarity=0.515 Sum_probs=26.9
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
+.-+++.|+||+|||++|..++... +.+++.+++
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l----~~~~~~~~~ 105 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL----DIPIAISDA 105 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT----TCCEEEEEG
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh----CCCEEEecc
Confidence 3358999999999999999888654 567777764
No 421
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.25 E-value=0.057 Score=50.87 Aligned_cols=33 Identities=27% Similarity=0.563 Sum_probs=25.6
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
..+++|+||+|+|||+++..+|... +.-++|.+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~------~~~iis~D 42 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL------PVELISVD 42 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS------CEEEEECC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC------CCcEEecc
Confidence 3489999999999999999987642 34456664
No 422
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.20 E-value=0.051 Score=48.25 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=18.9
Q ss_pred EEEEEeCCCCChhHHHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
.++|.|+||+||||++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999988753
No 423
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.19 E-value=0.079 Score=53.15 Aligned_cols=38 Identities=13% Similarity=0.138 Sum_probs=31.4
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCC-cEEEEeCCCC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKL-PVAIFSMEMS 254 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~-~vl~~s~E~~ 254 (452)
.++|.|+||+|||+++..++..+.. .|. +|+.++.-..
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~-~~~~~il~~a~T~~ 85 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALIS-TGETGIILAAPTHA 85 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHh-cCCceEEEecCcHH
Confidence 9999999999999999999988864 455 7888766543
No 424
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=93.19 E-value=0.24 Score=48.39 Aligned_cols=114 Identities=13% Similarity=0.069 Sum_probs=58.0
Q ss_pred CcEEEEEeCCCCChhHH-HHHHHHHHHHhC-------------------CCcEEEEeCC-CCHHHHHHHHHHHh--CCCC
Q psy2891 214 GDLIIVAGRPSMGKTAF-SLNIGEHIAIEN-------------------KLPVAIFSME-MSGIQLAMRMLGSV--GKLD 270 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~-~l~ia~~~a~~~-------------------g~~vl~~s~E-~~~~~i~~R~~a~~--~~i~ 270 (452)
|.-+++.|++|+|||.. ++-++..+.... +.+++|+.-- .-..++..++.... .++.
T Consensus 52 ~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 131 (417)
T 2i4i_A 52 KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVR 131 (417)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCC
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCce
Confidence 45588999999999964 444444432211 1458887543 23345555554322 2332
Q ss_pred ccccccCCCCcchHHHHHHHHHHHh-CCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhcc
Q psy2891 271 QHKLRTGRLSSDDWPRINDSIKKIN-KSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 271 ~~~i~~g~l~~~~~~~~~~a~~~l~-~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~ 339 (452)
...+. |..+..+ ....+. +.++.+. |++.+...+..-.....++++||||-.+.+..
T Consensus 132 ~~~~~-g~~~~~~------~~~~~~~~~~I~v~-----Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~ 189 (417)
T 2i4i_A 132 PCVVY-GGADIGQ------QIRDLERGCHLLVA-----TPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 189 (417)
T ss_dssp EEEEC-SSSCHHH------HHHHHTTCCSEEEE-----CHHHHHHHHHTTSBCCTTCCEEEESSHHHHHH
T ss_pred EEEEE-CCCCHHH------HHHHhhCCCCEEEE-----ChHHHHHHHHcCCcChhhCcEEEEEChhHhhc
Confidence 22222 2222211 112232 3355554 45566554432111112478999999998765
No 425
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=93.16 E-value=0.093 Score=58.30 Aligned_cols=114 Identities=16% Similarity=0.179 Sum_probs=66.4
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC-CHHHHHHHHHHHhCCCCc-----cccccCCCCcchHHH
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM-SGIQLAMRMLGSVGKLDQ-----HKLRTGRLSSDDWPR 286 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~-~~~~i~~R~~a~~~~i~~-----~~i~~g~l~~~~~~~ 286 (452)
.|.-+++.|++|+|||.+++-++.... ..+.+++|++--- -..|+..++.......+. -....|..+..+..+
T Consensus 70 ~g~dvlv~apTGSGKTl~~lp~l~~~~-~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~ 148 (1054)
T 1gku_B 70 RKESFAATAPTGVGKTSFGLAMSLFLA-LKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKEN 148 (1054)
T ss_dssp TTCCEECCCCBTSCSHHHHHHHHHHHH-TTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHH
T ss_pred hCCCEEEEcCCCCCHHHHHHHHHHHHh-hcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHH
Confidence 456789999999999998887777665 4677888886432 234455555443332222 112334444433222
Q ss_pred HHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchhcc
Q psy2891 287 INDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 287 ~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i~~ 339 (452)
. .+.+.+.++.+. |++.+...+.. ..++++||||-.+.|..
T Consensus 149 ~---~~~l~~~~IlV~-----TP~~L~~~l~~----L~~l~~lViDEah~~l~ 189 (1054)
T 1gku_B 149 F---MQNLRNFKIVIT-----TTQFLSKHYRE----LGHFDFIFVDDVDAILK 189 (1054)
T ss_dssp H---HHSGGGCSEEEE-----EHHHHHHCSTT----SCCCSEEEESCHHHHHT
T ss_pred H---HhhccCCCEEEE-----cHHHHHHHHHH----hccCCEEEEeChhhhhh
Confidence 1 223334455554 34555554433 22589999999988664
No 426
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.12 E-value=0.062 Score=45.42 Aligned_cols=23 Identities=17% Similarity=0.223 Sum_probs=20.1
Q ss_pred EEEEEeCCCCChhHHHHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.++|.|.||+||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999888754
No 427
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.05 E-value=0.056 Score=51.36 Aligned_cols=32 Identities=19% Similarity=0.477 Sum_probs=25.3
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
.+++|+|+||+|||+++..++... + +.+++.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l----~--~~iis~D 37 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL----P--CELISVD 37 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS----C--EEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc----C--CcEEecc
Confidence 379999999999999999987643 2 5666664
No 428
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.04 E-value=0.055 Score=47.49 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=18.9
Q ss_pred EEEEEeCCCCChhHHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGE 236 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~ 236 (452)
.+.|.|++|+||||++..++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 588999999999999988875
No 429
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.04 E-value=0.074 Score=51.49 Aligned_cols=34 Identities=18% Similarity=0.355 Sum_probs=26.6
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
+.-+++.|+||+|||++|..++... +.+.+.+++
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~----~~~~~~~~~ 84 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL----DVPFTMADA 84 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT----TCCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc----CCCEEEech
Confidence 3458999999999999999988654 566666654
No 430
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=93.01 E-value=0.071 Score=50.35 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=33.2
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAM 260 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~ 260 (452)
-++|.|+||+|||++|..++.... ..+.+++++++..-+..+..
T Consensus 27 ~vLi~Ge~GtGKt~lAr~i~~~~~-~~~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 27 TVLIHGDSGTGKELVARALHACSA-RSDRPLVTLNCAALNESLLE 70 (304)
T ss_dssp CEEEESCTTSCHHHHHHHHHHHSS-CSSSCCCEEECSSCCHHHHH
T ss_pred cEEEECCCCchHHHHHHHHHHhCc-ccCCCeEEEeCCCCChHHHH
Confidence 588999999999999998887653 35678888877655454443
No 431
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.01 E-value=0.075 Score=50.26 Aligned_cols=34 Identities=21% Similarity=0.384 Sum_probs=27.3
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM 253 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~ 253 (452)
.++|.|+||+|||+++..++... +.++.++++..
T Consensus 40 ~vll~G~~GtGKT~la~~i~~~~----~~~~~~~~~~~ 73 (324)
T 1hqc_A 40 HLLLFGPPGLGKTTLAHVIAHEL----GVNLRVTSGPA 73 (324)
T ss_dssp CCEEECCTTCCCHHHHHHHHHHH----TCCEEEECTTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHh----CCCEEEEeccc
Confidence 58899999999999999988754 46777776543
No 432
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.98 E-value=0.036 Score=51.05 Aligned_cols=22 Identities=23% Similarity=0.533 Sum_probs=19.7
Q ss_pred EEEEeCCCCChhHHHHHHHHHH
Q psy2891 217 IIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 217 ~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
++|.|+||+|||+++..++...
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7899999999999999888754
No 433
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.96 E-value=0.9 Score=45.48 Aligned_cols=38 Identities=26% Similarity=0.430 Sum_probs=30.2
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
..++++.|.||+||||++..++...-. .+.++..|+.+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d 76 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVG 76 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecc
Confidence 458999999999999999999987754 45666666553
No 434
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.95 E-value=0.042 Score=52.69 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=21.1
Q ss_pred EEEEeCCCCChhHHHHHHHHHHH
Q psy2891 217 IIVAGRPSMGKTAFSLNIGEHIA 239 (452)
Q Consensus 217 ~~i~g~pg~GKT~~~l~ia~~~a 239 (452)
+++.|+||+|||+++..++..+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999999988764
No 435
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.93 E-value=0.067 Score=48.38 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=21.6
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.-++.|.|+||+||||++..++...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999887654
No 436
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=92.93 E-value=0.1 Score=53.07 Aligned_cols=64 Identities=19% Similarity=0.155 Sum_probs=49.8
Q ss_pred cccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Q psy2891 195 TGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRM 262 (452)
Q Consensus 195 ~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~ 262 (452)
..+.||+..+|-+. .+.+|+=..|.|++|+|||+++.+++.+. ...-++|.-.....+++.+=+
T Consensus 214 epl~TGirvID~l~-PigrGqr~~Ifgg~g~GKT~L~~~ia~~~---~~~v~V~~~iGER~~Ev~e~~ 277 (600)
T 3vr4_A 214 VPMITGQRVIDTFF-PVTKGGAAAVPGPFGAGKTVVQHQIAKWS---DVDLVVYVGCGERGNEMTDVV 277 (600)
T ss_dssp SBCCCCCHHHHHHS-CCBTTCEEEEECCTTSCHHHHHHHHHHHS---SCSEEEEEEEEECHHHHHHHH
T ss_pred ceecccchhhhccC-CccCCCEEeeecCCCccHHHHHHHHHhcc---CCCEEEEEEecccHHHHHHHH
Confidence 46889999999864 58899999999999999999999887653 234467776666666665544
No 437
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.91 E-value=0.067 Score=47.92 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=20.4
Q ss_pred EEEEEeCCCCChhHHHHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
+++|.|+||+||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999988754
No 438
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.88 E-value=0.058 Score=47.47 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=18.6
Q ss_pred EEEEEeCCCCChhHHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGE 236 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~ 236 (452)
++.|.|++|+||||++..++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999988764
No 439
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.86 E-value=0.083 Score=47.71 Aligned_cols=29 Identities=21% Similarity=0.209 Sum_probs=23.7
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
...+|..+.|.|++|+||||++..++...
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46778899999999999999998877643
No 440
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.86 E-value=0.061 Score=46.49 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=19.9
Q ss_pred EEEEEeCCCCChhHHHHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.+.|.|++|+|||||+.-++-..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999998887655
No 441
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=92.86 E-value=0.25 Score=56.07 Aligned_cols=34 Identities=15% Similarity=0.307 Sum_probs=27.7
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHH
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGE 236 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~ 236 (452)
.|+.+.--+++|+.+.|.|++|+||||++.-++.
T Consensus 1048 ~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g 1081 (1284)
T 3g5u_A 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLER 1081 (1284)
T ss_dssp SBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTT
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4555544579999999999999999999887664
No 442
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.74 E-value=0.074 Score=52.03 Aligned_cols=24 Identities=25% Similarity=0.678 Sum_probs=21.7
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.+++|+||+|+|||+++..++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 488999999999999999999765
No 443
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.71 E-value=0.069 Score=47.45 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=20.5
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHH
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGE 236 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~ 236 (452)
++-+++|.|++|+||||++..++.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999988764
No 444
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.71 E-value=0.086 Score=44.03 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=21.9
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
|.+| +++|.|++|+|||+++-.+....
T Consensus 21 f~~g-~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 21 FKEG-INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp CCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 4454 99999999999999987776643
No 445
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.69 E-value=0.1 Score=49.79 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=24.8
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~ 251 (452)
-++|.|+||+|||+++..++.. .+.++..+++
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~----~~~~~~~~~~ 88 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYE----MSANIKTTAA 88 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH----TTCCEEEEEG
T ss_pred eEEEECcCCCCHHHHHHHHHHH----hCCCeEEecc
Confidence 3799999999999999998654 3455666654
No 446
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.67 E-value=0.074 Score=46.42 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=19.9
Q ss_pred CcEEEEEeCCCCChhHHHHHHHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGE 236 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~ 236 (452)
..++.|+|++|+||||++..++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999988765
No 447
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.67 E-value=0.33 Score=46.37 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=20.3
Q ss_pred EEEEeCCCCChhHHHHHHHHHH
Q psy2891 217 IIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 217 ~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
++|.|+||+|||+++..++..+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999988865
No 448
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=92.64 E-value=0.67 Score=47.94 Aligned_cols=113 Identities=10% Similarity=0.023 Sum_probs=59.7
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC-HHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS-GIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIK 292 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~-~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~ 292 (452)
|.-+++.+|+|+|||... ++..- ..+..+++++---+ ..+...++... |+.... ..+..+.++...+.....
T Consensus 59 g~d~lv~~pTGsGKTl~~-~lpal---~~~g~~lVisP~~~L~~q~~~~l~~~--gi~~~~-l~~~~~~~~~~~~~~~l~ 131 (591)
T 2v1x_A 59 GKEVFLVMPTGGGKSLCY-QLPAL---CSDGFTLVICPLISLMEDQLMVLKQL--GISATM-LNASSSKEHVKWVHAEMV 131 (591)
T ss_dssp TCCEEEECCTTSCTTHHH-HHHHH---TSSSEEEEECSCHHHHHHHHHHHHHH--TCCEEE-CCSSCCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHH-HHHHH---HcCCcEEEEeCHHHHHHHHHHHHHhc--CCcEEE-EeCCCCHHHHHHHHHHhh
Confidence 455899999999999533 33221 23457888864321 23444554432 555433 344555544433322221
Q ss_pred HHh-CCCeEEEcCCCCCHHHH------HHHHHHHHHHcCCccEEEEcCcchhcc
Q psy2891 293 KIN-KSQLYIDETPSLNVIEL------RANSRRLSRQCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 293 ~l~-~~~l~i~~~~~~t~~~i------~~~i~~~~~~~~~~~~vvID~l~~i~~ 339 (452)
... ..++.+. |++.+ ...+....... ++++||||-.+.+..
T Consensus 132 ~~~~~~~Ilv~-----Tpe~L~~~~~~~~~l~~~~~~~-~i~~iViDEAH~is~ 179 (591)
T 2v1x_A 132 NKNSELKLIYV-----TPEKIAKSKMFMSRLEKAYEAR-RFTRIAVDEVHCCSQ 179 (591)
T ss_dssp CTTCCCCEEEE-----CHHHHHSCHHHHHHHHHHHHTT-CEEEEEEETGGGGST
T ss_pred cccCCCCEEEE-----ChhHhhccHHHHHHHHhhhhcc-CCcEEEEECcccccc
Confidence 111 2344443 33333 33333332223 599999999998864
No 449
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=92.62 E-value=0.12 Score=55.65 Aligned_cols=50 Identities=28% Similarity=0.325 Sum_probs=38.2
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCH-HHHHHHHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSG-IQLAMRML 263 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~-~~i~~R~~ 263 (452)
+.+++|.|+||+|||+++..++..+....+.+|+..+.-... +++.+|+.
T Consensus 371 ~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~ 421 (800)
T 2wjy_A 371 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIH 421 (800)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHH
Confidence 568999999999999999999888764357889888765433 45556654
No 450
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.60 E-value=0.076 Score=47.09 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=19.6
Q ss_pred EEEEeCCCCChhHHHHHHHHHH
Q psy2891 217 IIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 217 ~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
++|.|+||+||||++..++...
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999888754
No 451
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.55 E-value=0.064 Score=50.28 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=20.0
Q ss_pred cEEEEEeCCCCChhHHHHHHHH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGE 236 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~ 236 (452)
.+++|.|+||+||||++..++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998876
No 452
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.44 E-value=0.11 Score=47.91 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=22.8
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
++..-+++.||||+|||.|+..+|...
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 555679999999999999999887753
No 453
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=92.36 E-value=0.1 Score=52.82 Aligned_cols=64 Identities=19% Similarity=0.167 Sum_probs=49.5
Q ss_pred cccccCccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Q psy2891 195 TGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRM 262 (452)
Q Consensus 195 ~~i~tg~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~~~~i~~R~ 262 (452)
..+.||+..+|-+. .+.+|+=..|.|++|+|||+++.+++.+. ...-++|.-.....+++.+=+
T Consensus 203 epl~TGirvID~l~-PigrGqr~~Ifg~~g~GKT~l~~~ia~~~---~~~v~V~~~iGER~~Ev~e~~ 266 (578)
T 3gqb_A 203 TPFLTGMRILDVLF-PVAMGGTAAIPGPFGSGKSVTQQSLAKWS---NADVVVYVGSGERGNEMTDVL 266 (578)
T ss_dssp SEECCSCHHHHTTS-CEETTCEEEECCCTTSCHHHHHHHHHHHS---SCSEEEEEEEEECHHHHHHHH
T ss_pred Ccccccchhhhhcc-cccCCCEEeeeCCCCccHHHHHHHHHhcc---CCCEEEEEEecccHHHHHHHH
Confidence 46889999999864 57889999999999999999999887653 234567776666666665443
No 454
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=92.32 E-value=0.085 Score=54.13 Aligned_cols=26 Identities=31% Similarity=0.678 Sum_probs=23.7
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
+|..++|.|+||+|||+++..++...
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 68899999999999999999888765
No 455
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.30 E-value=0.084 Score=44.95 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=19.4
Q ss_pred CCcEEEEEeCCCCChhHHHHHHH
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIG 235 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia 235 (452)
+|.-++|.|+||+|||+|...++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~ 25 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALA 25 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 46678999999999999998775
No 456
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.29 E-value=0.071 Score=46.81 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=25.4
Q ss_pred cccccccCCCCCCcEEEEEeCCCCChhHHHHHHH
Q psy2891 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIG 235 (452)
Q Consensus 202 ~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia 235 (452)
..|+. -.+.+|..++|.|++|+|||||+..++
T Consensus 16 ~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 16 PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHh
Confidence 34444 247789999999999999999987664
No 457
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=92.28 E-value=0.64 Score=50.92 Aligned_cols=115 Identities=16% Similarity=0.092 Sum_probs=63.1
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhC----CCcEEEEeCCC-CHHHHHHHHHHHh--CCCCccccccCCCCc-chH
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIEN----KLPVAIFSMEM-SGIQLAMRMLGSV--GKLDQHKLRTGRLSS-DDW 284 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~----g~~vl~~s~E~-~~~~i~~R~~a~~--~~i~~~~i~~g~l~~-~~~ 284 (452)
.|.-+++++++|+|||..++..+....... +.+|++++--- -..++..++.... .++....+. |..+. ..+
T Consensus 262 ~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~-G~~~~~~~~ 340 (936)
T 4a2w_A 262 NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGIS-GENFSNVSV 340 (936)
T ss_dssp TTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEEC-CC-----CC
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEE-CCcchhhHH
Confidence 345689999999999987777666654322 67899987532 3345555544332 245444333 33221 112
Q ss_pred HHHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHHH-HcCCccEEEEcCcchhcc
Q psy2891 285 PRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSR-QCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 285 ~~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~~-~~~~~~~vvID~l~~i~~ 339 (452)
..+ ..+..+.|. |++.+...+..-.. ...++++||||-.+.+..
T Consensus 341 ~~~------~~~~~IvI~-----Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~ 385 (936)
T 4a2w_A 341 EKV------IEDSDIIVV-----TPQILVNSFEDGTLTSLSIFTLMIFDECHNTTG 385 (936)
T ss_dssp HHH------HHHCSEEEE-----CHHHHHHHHHSSSCCCGGGCSEEEEETGGGCST
T ss_pred HHh------ccCCCEEEe-----cHHHHHHHHHcCccccccCCCEEEEECccccCC
Confidence 221 123456664 45555554432000 011368999999988764
No 458
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.28 E-value=0.031 Score=53.50 Aligned_cols=29 Identities=38% Similarity=0.568 Sum_probs=24.5
Q ss_pred CCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 210 G~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
-+++|+++.|.|++|+|||||+.-++...
T Consensus 167 ~i~~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 167 GIAIGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHHHTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35789999999999999999988776544
No 459
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.27 E-value=0.086 Score=45.14 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=21.0
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHH
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGE 236 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~ 236 (452)
.|.-++|.|+||+|||++++.++.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 355699999999999999998876
No 460
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=92.22 E-value=0.17 Score=53.35 Aligned_cols=113 Identities=19% Similarity=0.176 Sum_probs=62.8
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHhC-----CCcEEEEeCCCC-HHHH-HHHHHHHhCC-CCccccccCCCC-cchHH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIEN-----KLPVAIFSMEMS-GIQL-AMRMLGSVGK-LDQHKLRTGRLS-SDDWP 285 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~~-----g~~vl~~s~E~~-~~~i-~~R~~a~~~~-i~~~~i~~g~l~-~~~~~ 285 (452)
.-++|++++|+|||..++..+....... +.+|++++---+ ..++ ..++...... +....+. |..+ .+.+.
T Consensus 23 ~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~-g~~~~~~~~~ 101 (699)
T 4gl2_A 23 KNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLS-GDTQLKISFP 101 (699)
T ss_dssp CCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC-----CCCCHH
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEe-CCcchhhHHH
Confidence 3489999999999998887777654321 267888877643 3556 5555443322 3333332 3322 22333
Q ss_pred HHHHHHHHHhCCCeEEEcCCCCCHHHHHHHHHHHH------HHcCCccEEEEcCcchhcc
Q psy2891 286 RINDSIKKINKSQLYIDETPSLNVIELRANSRRLS------RQCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 286 ~~~~a~~~l~~~~l~i~~~~~~t~~~i~~~i~~~~------~~~~~~~~vvID~l~~i~~ 339 (452)
.+ .....+.|. |++.+...+.... ....++++||||-.+.+..
T Consensus 102 ~~------~~~~~Ilv~-----Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~ 150 (699)
T 4gl2_A 102 EV------VKSCDIIIS-----TAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK 150 (699)
T ss_dssp HH------HHSCSEEEE-----EHHHHHHHTC--------CCCGGGCSEEEEESGGGCBT
T ss_pred hh------hcCCCEEEE-----CHHHHHHHHhccccccccceecccCcEEEEECccccCc
Confidence 22 134566664 3455554431110 0111489999999998754
No 461
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.19 E-value=0.15 Score=45.30 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=28.7
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS 254 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~ 254 (452)
.++|.|.+|+|||+|+.+++..... ..++..+..+..
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~~~--~~~~~~i~~d~~ 76 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNLKD--KYKIACIAGDVI 76 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT--TCCEEEEEEETT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcc--CCeEEEEECCCC
Confidence 5788899999999999999987642 356776666544
No 462
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.01 E-value=0.25 Score=56.27 Aligned_cols=168 Identities=11% Similarity=0.171 Sum_probs=91.0
Q ss_pred ccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC----CCCHHHHHHHHHHHhCCCCccc-----
Q psy2891 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM----EMSGIQLAMRMLGSVGKLDQHK----- 273 (452)
Q Consensus 203 ~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~----E~~~~~i~~R~~a~~~~i~~~~----- 273 (452)
-|+.+.--+++|+.+.|+|++|+||||++.-+..-. ......+++.. +.+...+..++ +=|+.+.
T Consensus 1094 VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~--~p~~G~I~iDG~di~~i~~~~lR~~i----~~V~Qdp~LF~g 1167 (1321)
T 4f4c_A 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFY--DTLGGEIFIDGSEIKTLNPEHTRSQI----AIVSQEPTLFDC 1167 (1321)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSS--CCSSSEEEETTEETTTBCHHHHHTTE----EEECSSCCCCSE
T ss_pred cccceeEEECCCCEEEEECCCCChHHHHHHHHhcCc--cCCCCEEEECCEEhhhCCHHHHHhhe----EEECCCCEeeCc
Confidence 355554457999999999999999999987555432 11122344432 34555554442 1122111
Q ss_pred -ccc--------CCCCcchHHHHHHHHHH------HhCC----CeEEEcC-CCCCHH--HHHHHHHHHHHHcCCccEEEE
Q psy2891 274 -LRT--------GRLSSDDWPRINDSIKK------INKS----QLYIDET-PSLNVI--ELRANSRRLSRQCGKIGVIII 331 (452)
Q Consensus 274 -i~~--------g~l~~~~~~~~~~a~~~------l~~~----~l~i~~~-~~~t~~--~i~~~i~~~~~~~~~~~~vvI 331 (452)
+++ ...++++ +.+|++. +... .-.+-+. ..+|-. +..+.+|.+.+ +++++|+
T Consensus 1168 TIreNI~~gld~~~~sd~e---i~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr---~~~ILiL 1241 (1321)
T 4f4c_A 1168 SIAENIIYGLDPSSVTMAQ---VEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVR---NPKILLL 1241 (1321)
T ss_dssp EHHHHHSSSSCTTTSCHHH---HHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHS---CCSEEEE
T ss_pred cHHHHHhccCCCCCCCHHH---HHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHh---CCCEEEE
Confidence 111 1233333 3333332 2222 2233222 346654 45555666654 4899999
Q ss_pred cCcchhccCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEEecCCcchhhcCCCCCCchhhhhhchhhhhhceeEEEecCc
Q psy2891 332 DYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDE 411 (452)
Q Consensus 332 D~l~~i~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~l~ql~r~~~~r~~~~p~l~dl~~S~~ie~~aD~vl~l~r~~ 411 (452)
|--+.-- +...+ ..+.+.|+.+.+ |+++|+++|-= +- -.+||.|+.|..-.
T Consensus 1242 DEaTSaL-----D~~tE--~~Iq~~l~~~~~--~~TvI~IAHRL-------------sT-------i~~aD~I~Vld~G~ 1292 (1321)
T 4f4c_A 1242 DEATSAL-----DTESE--KVVQEALDRARE--GRTCIVIAHRL-------------NT-------VMNADCIAVVSNGT 1292 (1321)
T ss_dssp ESCCCST-----TSHHH--HHHHHHHTTTSS--SSEEEEECSSS-------------ST-------TTTCSEEEEESSSS
T ss_pred eCccccC-----CHHHH--HHHHHHHHHHcC--CCEEEEeccCH-------------HH-------HHhCCEEEEEECCE
Confidence 9864211 11221 245566776654 88999999921 11 23589999996543
No 463
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.90 E-value=0.13 Score=52.83 Aligned_cols=40 Identities=15% Similarity=0.285 Sum_probs=33.2
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
+.|.++++.|.||+||||++..++..... .|.++.+++.+
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~-~G~~~~~ld~D 409 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQA-RGRKVTLLDGD 409 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEECHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhh-cCCeEEEECch
Confidence 34778999999999999999999987653 67888888743
No 464
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.87 E-value=0.13 Score=44.06 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=27.7
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
..+.|.|++|+||||++.-++.... ..|.++..+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~-~~g~~~G~I~~d 39 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR-ERGLRVAVVKRH 39 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH-HTTCCEEEEEC-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh-hcCCceEEEEEc
Confidence 4688999999999999998887764 356566655543
No 465
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.83 E-value=0.11 Score=45.48 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=20.6
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
--++.|+|.+|+||||++..++..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 347889999999999999888764
No 466
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.80 E-value=0.11 Score=45.37 Aligned_cols=23 Identities=13% Similarity=0.453 Sum_probs=20.4
Q ss_pred EEEEEeCCCCChhHHHHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
++.|+|++|+||||++..++...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 78999999999999999887654
No 467
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=91.78 E-value=0.14 Score=53.08 Aligned_cols=37 Identities=22% Similarity=0.367 Sum_probs=30.9
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEe
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFS 250 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s 250 (452)
+|.+++|.|.||+||||++..++.... ..|.++++++
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~-~~G~~~v~lD 87 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV-CHGIPCYTLD 87 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEES
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH-hcCCeEEEec
Confidence 577999999999999999999998774 3577777764
No 468
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.74 E-value=0.12 Score=49.10 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=20.7
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~ 237 (452)
-.+++|.|+.|+||||++..++..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 358999999999999999887754
No 469
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=91.72 E-value=0.14 Score=48.58 Aligned_cols=39 Identities=15% Similarity=0.275 Sum_probs=27.9
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeC--CCCHHH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM--EMSGIQ 257 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~--E~~~~~ 257 (452)
.-+++.|+||+|||+++..++... +.++..+.+ +....+
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~----~~~~~~i~~~~~~~~~~ 87 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTM----DLDFHRIQFTPDLLPSD 87 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHT----TCCEEEEECCTTCCHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh----CCCeEEEecCCCCChhh
Confidence 358999999999999999887643 445665554 444443
No 470
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=91.64 E-value=0.48 Score=44.37 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=25.0
Q ss_pred CcEEEEEeCCCCChhHH-HHHHHHHHHHh-CCCcEEEEeC
Q psy2891 214 GDLIIVAGRPSMGKTAF-SLNIGEHIAIE-NKLPVAIFSM 251 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~-~l~ia~~~a~~-~g~~vl~~s~ 251 (452)
|.-+++.|++|+|||.. ++.++..+... .+..++|++-
T Consensus 131 ~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~P 170 (300)
T 3fmo_B 131 PQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSP 170 (300)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred CCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcC
Confidence 46789999999999954 44555444221 2336888864
No 471
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.62 E-value=0.12 Score=46.69 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=22.6
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
+|.+++|.|.+|+||||++..++...
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999888764
No 472
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=91.62 E-value=0.16 Score=45.35 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=24.6
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
.+|.++++.|++|+||||.+..++...
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999988876
No 473
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.58 E-value=0.11 Score=48.36 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=19.9
Q ss_pred CcEEEEEeCCCCChhHHHHHHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIG 235 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia 235 (452)
.-+++|+|+||+||||++..++
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999999888
No 474
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.58 E-value=0.11 Score=50.14 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=21.6
Q ss_pred CCCcEEEEEeCCCCChhHHHHHHHH
Q psy2891 212 QPGDLIIVAGRPSMGKTAFSLNIGE 236 (452)
Q Consensus 212 ~~G~l~~i~g~pg~GKT~~~l~ia~ 236 (452)
.+|+++.|.|+||+|||||+..++-
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHC
T ss_pred cCCCEEEEECCCCccHHHHHHHHhc
Confidence 4789999999999999999876653
No 475
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=91.54 E-value=0.22 Score=44.78 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=28.2
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEe
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFS 250 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s 250 (452)
+++-+-.+|+|||+++..++..++ ++|.+|.||-
T Consensus 7 i~Itgt~t~vGKT~vt~~L~~~l~-~~G~~V~~~K 40 (228)
T 3of5_A 7 FFIIGTDTEVGKTYISTKLIEVCE-HQNIKSLCLK 40 (228)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHHH-HTTCCEEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH-HCCCeeEEec
Confidence 445555599999999999999986 4799999984
No 476
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.44 E-value=0.21 Score=47.66 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=28.2
Q ss_pred EEEEeCCCCChhHHHHHHHHHHHHh--CCCcEEEEeCCC
Q psy2891 217 IIVAGRPSMGKTAFSLNIGEHIAIE--NKLPVAIFSMEM 253 (452)
Q Consensus 217 ~~i~g~pg~GKT~~~l~ia~~~a~~--~g~~vl~~s~E~ 253 (452)
++|.|+||+|||+++..++...... ....+..++...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 99 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD 99 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc
Confidence 8999999999999999999876421 235677776543
No 477
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=91.34 E-value=0.14 Score=45.06 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=21.9
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
|.+| +++|.|+.|+|||+++-.+.+.+
T Consensus 21 f~~~-~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 21 FKEG-INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp CCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 4454 99999999999999987766544
No 478
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=91.31 E-value=0.21 Score=51.97 Aligned_cols=39 Identities=13% Similarity=0.251 Sum_probs=30.2
Q ss_pred CCcEEEEEeCCCCChhHHHHHHHHHHHH---hCCCcEEEEeC
Q psy2891 213 PGDLIIVAGRPSMGKTAFSLNIGEHIAI---ENKLPVAIFSM 251 (452)
Q Consensus 213 ~G~l~~i~g~pg~GKT~~~l~ia~~~a~---~~g~~vl~~s~ 251 (452)
.+.+++|.|+||+|||+++..++..+.. ..+.+|+....
T Consensus 163 ~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~AP 204 (608)
T 1w36_D 163 TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAP 204 (608)
T ss_dssp TBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBS
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeC
Confidence 3569999999999999999888877643 24567877654
No 479
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=91.27 E-value=0.1 Score=50.58 Aligned_cols=38 Identities=24% Similarity=0.442 Sum_probs=27.1
Q ss_pred CccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 200 GFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 200 g~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
+|..++...--+.+| +++|.|++|+||||+.-.++...
T Consensus 10 ~f~~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 10 NFLGLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EETTEEEEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CccCccceEEecCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 344444443346677 99999999999999986666543
No 480
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.26 E-value=0.067 Score=54.39 Aligned_cols=37 Identities=24% Similarity=0.154 Sum_probs=27.3
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEE
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIF 249 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~ 249 (452)
+.+|..++|+|++|+||||++..++... ....+++.+
T Consensus 257 v~~g~~i~I~GptGSGKTTlL~aL~~~i--~~~~giiti 293 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTTLNAIMMFI--PPDAKVVSI 293 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHHHHHHGGGS--CTTCCEEEE
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhC--CCCCCEEEE
Confidence 3688899999999999999998766543 233445443
No 481
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.21 E-value=0.1 Score=52.38 Aligned_cols=38 Identities=11% Similarity=0.073 Sum_probs=30.6
Q ss_pred CccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHHHH
Q psy2891 200 GFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 200 g~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
++..|+.+.--+.+ +++.|.|++|+|||||+.-++.-.
T Consensus 16 ~~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 16 NWNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp EETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence 45667776546888 999999999999999998777543
No 482
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=91.21 E-value=0.14 Score=51.50 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=21.9
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIA 239 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a 239 (452)
.-++|.|+||+|||+++..++..+.
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHH
Confidence 3568999999999999999998874
No 483
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=91.14 E-value=0.32 Score=54.71 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=30.6
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHH-h--CCCcEEEEeCCC
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAI-E--NKLPVAIFSMEM 253 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~-~--~g~~vl~~s~E~ 253 (452)
..++.|.|.+|+|||++|.+++.+... . ....|+|++...
T Consensus 147 ~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~ 189 (1249)
T 3sfz_A 147 PGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189 (1249)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred CCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence 358999999999999999998876422 1 234688888765
No 484
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=91.13 E-value=0.29 Score=51.07 Aligned_cols=50 Identities=10% Similarity=0.106 Sum_probs=37.4
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCC---CcEEEEeCC-CCHHHHHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENK---LPVAIFSME-MSGIQLAMRMLGS 265 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g---~~vl~~s~E-~~~~~i~~R~~a~ 265 (452)
.++|.|+||+|||+.+.+-+.+.+...+ .+++++++- ....++..|+...
T Consensus 24 ~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 24 NLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp CEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 5788899999999999998888765322 579998864 3445677777654
No 485
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=91.03 E-value=0.15 Score=48.93 Aligned_cols=22 Identities=27% Similarity=0.582 Sum_probs=19.7
Q ss_pred EEEEeCCCCChhHHHHHHHHHH
Q psy2891 217 IIVAGRPSMGKTAFSLNIGEHI 238 (452)
Q Consensus 217 ~~i~g~pg~GKT~~~l~ia~~~ 238 (452)
++|.|+||+|||+++..++...
T Consensus 27 i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 27 VILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 8899999999999998887655
No 486
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.97 E-value=0.13 Score=43.36 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=17.9
Q ss_pred EEEEEeCCCCChhHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIG 235 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia 235 (452)
-++|.|+||+|||+|...++
T Consensus 5 ~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999998875
No 487
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=90.91 E-value=0.25 Score=49.23 Aligned_cols=34 Identities=26% Similarity=0.281 Sum_probs=26.2
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM 253 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~ 253 (452)
-++|.|+||+|||+++..++... +.+...++...
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~----~~~f~~l~a~~ 85 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYA----NADVERISAVT 85 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT----TCEEEEEETTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHh----CCCeEEEEecc
Confidence 58999999999999999887653 45566666544
No 488
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=90.90 E-value=0.26 Score=43.45 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=28.2
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEE
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIF 249 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~ 249 (452)
|.+++|-|..|+||||.+..++.... .|.+|++.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~--~~~~v~~~ 35 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV--KDYDVIMT 35 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT--TTSCEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH--CCCCEEEe
Confidence 45899999999999999988888773 47788764
No 489
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=90.85 E-value=0.84 Score=46.42 Aligned_cols=112 Identities=11% Similarity=0.016 Sum_probs=56.0
Q ss_pred CcEEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCCC-HHHHHHHHHHHhCCCCccccccCCCCcchHHHHHHHHH
Q psy2891 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMS-GIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIK 292 (452)
Q Consensus 214 G~l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~~-~~~i~~R~~a~~~~i~~~~i~~g~l~~~~~~~~~~a~~ 292 (452)
|.-+++.+++|+|||.. .++..- . .+..++|++---+ ..++..++.. .|+....+ .+..+.++.........
T Consensus 40 g~d~lv~apTGsGKTl~-~~lp~l--~-~~g~~lvi~P~~aL~~q~~~~l~~--~gi~~~~l-~~~~~~~~~~~~~~~~~ 112 (523)
T 1oyw_A 40 GRDCLVVMPTGGGKSLC-YQIPAL--L-LNGLTVVVSPLISLMKDQVDQLQA--NGVAAACL-NSTQTREQQLEVMTGCR 112 (523)
T ss_dssp TCCEEEECSCHHHHHHH-HHHHHH--H-SSSEEEEECSCHHHHHHHHHHHHH--TTCCEEEE-CTTSCHHHHHHHHHHHH
T ss_pred CCCEEEECCCCcHHHHH-HHHHHH--H-hCCCEEEECChHHHHHHHHHHHHH--cCCcEEEE-eCCCCHHHHHHHHHHHh
Confidence 34578889999999953 333322 2 3456888864321 2334444432 35554333 34444444332222111
Q ss_pred HHhCCCeEEEcCCCCCHHHHHHH-HHHHHHHcCCccEEEEcCcchhcc
Q psy2891 293 KINKSQLYIDETPSLNVIELRAN-SRRLSRQCGKIGVIIIDYLQLMSA 339 (452)
Q Consensus 293 ~l~~~~l~i~~~~~~t~~~i~~~-i~~~~~~~~~~~~vvID~l~~i~~ 339 (452)
. ....+.+. |++.+... ........ ++++||||-.+.+..
T Consensus 113 ~-~~~~ilv~-----Tpe~l~~~~~~~~l~~~-~~~~vViDEaH~i~~ 153 (523)
T 1oyw_A 113 T-GQIRLLYI-----APERLMLDNFLEHLAHW-NPVLLAVDEAHCISQ 153 (523)
T ss_dssp H-TCCSEEEE-----CHHHHTSTTHHHHHTTS-CEEEEEESSGGGGCT
T ss_pred c-CCCCEEEE-----CHHHHhChHHHHHHhhC-CCCEEEEeCccccCc
Confidence 1 12345443 33333211 11111223 599999999998864
No 490
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.81 E-value=0.23 Score=53.08 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=30.4
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
-+++.|+||+|||.+|..++.... ..+.+++++++.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~-~~~~~~i~i~~s 558 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIF-GDEESMIRIDMS 558 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH-SCTTCEEEEEGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc-CCCcceEEEech
Confidence 689999999999999999998874 457788888763
No 491
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=90.71 E-value=0.18 Score=48.55 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=21.9
Q ss_pred cEEEEEeCCCCChhHHHHHHHHHHH
Q psy2891 215 DLIIVAGRPSMGKTAFSLNIGEHIA 239 (452)
Q Consensus 215 ~l~~i~g~pg~GKT~~~l~ia~~~a 239 (452)
..++|.|+||+|||+++..++....
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999999987663
No 492
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.69 E-value=0.15 Score=47.97 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=22.6
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIG 235 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia 235 (452)
+..|.++.|.|++|+|||||+..++
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999999999887
No 493
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=90.64 E-value=0.25 Score=48.93 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=28.5
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E 252 (452)
-++|.|+||+|||+++..++.++.. .|.+|++++..
T Consensus 55 h~~i~G~tGsGKs~~~~~li~~~~~-~g~~viv~Dpk 90 (437)
T 1e9r_A 55 HLLVNGATGTGKSVLLRELAYTGLL-RGDRMVIVDPN 90 (437)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHH-TTCEEEEEEET
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH-CCCcEEEEeCC
Confidence 5899999999999998777777753 56777777644
No 494
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=90.58 E-value=0.23 Score=46.06 Aligned_cols=48 Identities=13% Similarity=0.025 Sum_probs=33.2
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCC-CCHHHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME-MSGIQLAMRML 263 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E-~~~~~i~~R~~ 263 (452)
-.+|++++|+|||..++.++.......+.+|+|+.-- .-..++..++.
T Consensus 130 ~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~ 178 (282)
T 1rif_A 130 RRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFV 178 (282)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHH
T ss_pred CeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHH
Confidence 3578999999999999887777654444589998642 22345555554
No 495
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=90.54 E-value=1.7 Score=48.72 Aligned_cols=108 Identities=15% Similarity=0.145 Sum_probs=62.1
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHHhCCCcEEEEeCCC-CHHHHHHHHHHHhCCCCccc-cccCCCCcchHHHHHHHHHH
Q psy2891 216 LIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM-SGIQLAMRMLGSVGKLDQHK-LRTGRLSSDDWPRINDSIKK 293 (452)
Q Consensus 216 l~~i~g~pg~GKT~~~l~ia~~~a~~~g~~vl~~s~E~-~~~~i~~R~~a~~~~i~~~~-i~~g~l~~~~~~~~~~a~~~ 293 (452)
-.+++|++|+|||..++-.+..++ ..|.+|+++.--. -..|+..++.....+.+..- ...+..+..+... ....
T Consensus 626 d~ll~~~TGsGKT~val~aa~~~~-~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~---~~~~ 701 (1151)
T 2eyq_A 626 DRLVCGDVGFGKTEVAMRAAFLAV-DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQ---ILAE 701 (1151)
T ss_dssp EEEEECCCCTTTHHHHHHHHHHHH-TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHH---HHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHHH-HhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHH---HHHH
Confidence 689999999999998887777665 4678899986432 34566666655444333221 1233334333332 2233
Q ss_pred HhC--CCeEEEcCCCCCHHHHHHHHHHHHHHcCCccEEEEcCcchh
Q psy2891 294 INK--SQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLM 337 (452)
Q Consensus 294 l~~--~~l~i~~~~~~t~~~i~~~i~~~~~~~~~~~~vvID~l~~i 337 (452)
+.. ..+.|- ++ .-+. .. ....++++||||-.+.+
T Consensus 702 l~~g~~dIvV~-T~----~ll~----~~-~~~~~l~lvIiDEaH~~ 737 (1151)
T 2eyq_A 702 VAEGKIDILIG-TH----KLLQ----SD-VKFKDLGLLIVDEEHRF 737 (1151)
T ss_dssp HHTTCCSEEEE-CT----HHHH----SC-CCCSSEEEEEEESGGGS
T ss_pred HhcCCCCEEEE-CH----HHHh----CC-ccccccceEEEechHhc
Confidence 433 345554 22 1111 10 01225899999999885
No 496
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=90.53 E-value=0.049 Score=51.48 Aligned_cols=26 Identities=19% Similarity=0.297 Sum_probs=22.9
Q ss_pred CCCCcEEEEEeCCCCChhHHHHHHHH
Q psy2891 211 LQPGDLIIVAGRPSMGKTAFSLNIGE 236 (452)
Q Consensus 211 ~~~G~l~~i~g~pg~GKT~~~l~ia~ 236 (452)
+.+|+.+.|.|+||+|||||+..++-
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcc
Confidence 56799999999999999999887754
No 497
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.52 E-value=0.15 Score=42.59 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=17.9
Q ss_pred EEEEeCCCCChhHHHHHHHH
Q psy2891 217 IIVAGRPSMGKTAFSLNIGE 236 (452)
Q Consensus 217 ~~i~g~pg~GKT~~~l~ia~ 236 (452)
+++.|++|+|||+|+..+..
T Consensus 8 i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 68889999999999998874
No 498
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=90.48 E-value=0.15 Score=49.19 Aligned_cols=36 Identities=19% Similarity=0.142 Sum_probs=29.6
Q ss_pred CccccccccCCCCCCcEEEEEeCCCCChhHHHHHHHH
Q psy2891 200 GFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGE 236 (452)
Q Consensus 200 g~~~LD~~~gG~~~G~l~~i~g~pg~GKT~~~l~ia~ 236 (452)
+|..++.+.--+.+| +++|.|++|+|||+++--+..
T Consensus 13 ~~~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 13 NYRNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp SBTTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred CccceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 566676664457888 999999999999999888775
No 499
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.44 E-value=0.12 Score=44.39 Aligned_cols=20 Identities=20% Similarity=0.449 Sum_probs=17.9
Q ss_pred EEEEeCCCCChhHHHHHHHH
Q psy2891 217 IIVAGRPSMGKTAFSLNIGE 236 (452)
Q Consensus 217 ~~i~g~pg~GKT~~~l~ia~ 236 (452)
++|.|+||+|||+|+..++.
T Consensus 5 v~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999988764
No 500
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.41 E-value=0.16 Score=42.10 Aligned_cols=21 Identities=24% Similarity=0.599 Sum_probs=18.1
Q ss_pred EEEEeCCCCChhHHHHHHHHH
Q psy2891 217 IIVAGRPSMGKTAFSLNIGEH 237 (452)
Q Consensus 217 ~~i~g~pg~GKT~~~l~ia~~ 237 (452)
+++.|++|+|||+|+..++..
T Consensus 6 i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 788999999999998887643
Done!