RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2891
(452 letters)
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A
{Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A
2r6e_A 2vyf_A 2vye_A
Length = 454
Score = 703 bits (1816), Expect = 0.0
Identities = 208/447 (46%), Positives = 312/447 (69%), Gaps = 8/447 (1%)
Query: 7 TENKKFRVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINS 66
+E R+PP SIE+EQ+VLG + LD A ++ L + FYR H+ IF ++++ +
Sbjct: 2 SELFSERIPPQSIEAEQAVLGAVFLDPAALVPASEILIPEDFYRAAHQKIFHAMLRVADR 61
Query: 67 SHPADVITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITV 126
P D++TV L+ + EEIGG+SYL+ LA +P+AAN+ YA IV ++ +LR+LI
Sbjct: 62 GEPVDLVTVTAELAASEQLEEIGGVSYLSELADAVPTAANVEYYARIVEEKSVLRRLIRT 121
Query: 127 TDEISSQAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHN 186
I+ + +R E+ +LDEA+ KI +++++ + F+ I+ +L + I LHN
Sbjct: 122 ATSIAQDGY-TREDEIDVLLDEADRKIMEVSQRKH--SGAFKNIKDILVQTYDNIEMLHN 178
Query: 187 RGTNDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPV 246
D ++TGI TGF ELD++TSG Q DLIIVA RPS+GKTAF+LNI +++A + V
Sbjct: 179 ---RDGEITGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENV 235
Query: 247 AIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPS 306
AIFS+EMS QL MRML + G ++ LRTG+L+ +DW ++ ++ ++ + +YID+TPS
Sbjct: 236 AIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPS 295
Query: 307 LNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSR-GENRATEISEISRNLKGLAKEIN 365
+ V ++RA RRL ++ G +G+I+IDYLQL+ + R ENR E+SEISR+LK LA+E+
Sbjct: 296 IRVSDIRAKCRRLKQESG-LGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELE 354
Query: 366 CPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEI 425
P++ALSQL+RS+EQRQ+KRP+MSD+RESG+IEQDAD++ F+YRD+ YN++S +K I EI
Sbjct: 355 VPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYYNKDSENKNIIEI 414
Query: 426 IVSKQRNGPIGNIRLTFSGQYTKFNNF 452
I++KQRNGP+G ++L F +Y KF N
Sbjct: 415 IIAKQRNGPVGTVQLAFIKEYNKFVNL 441
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus
aquaticus}
Length = 444
Score = 697 bits (1801), Expect = 0.0
Identities = 194/444 (43%), Positives = 286/444 (64%), Gaps = 11/444 (2%)
Query: 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNS-DYFYRYDHRLIFKHIIKLINSSHPAD 71
+PPHS+E+EQSVLG +LLD+ D++ L S + FY HR I+ + L + P D
Sbjct: 4 PIPPHSLEAEQSVLGSILLDSDVMDEVEGLLPSPEAFYAEAHRKIYAAMQALRSQGRPVD 63
Query: 72 VITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEIS 131
++T+ + LS G EE+GG +YL L++ P+AA YA IV ++ LR+LI E
Sbjct: 64 LVTLSEELSRRGQLEEVGGTAYLLQLSEATPTAAYAEHYARIVAEKWTLRRLIQAAGEAM 123
Query: 132 SQAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTND 191
A+ + +ILD A KI +A + + + ++ L++ + I L N
Sbjct: 124 RLAY-EEAGSLDEILDTAGKKILEVALTKT--DTEARPMRELVHETFEHIEALFQ---NK 177
Query: 192 NDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251
+V G+ TGF ELD++ L PG L I+A RP+MGKTAF+L I ++ A++ + V I+S+
Sbjct: 178 GEVAGVRTGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237
Query: 252 EMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIE 311
EM QL +RM+ S ++D +++R G+L+ D+ R+ D +++++ +YID+TP L ++E
Sbjct: 238 EMPAAQLTLRMMCSEARIDMNRVRLGQLTDRDFSRLVDVASRLSEAPIYIDDTPDLTLME 297
Query: 312 LRANSRRLSRQCGKIGVIIIDYLQLMSANS---RGENRATEISEISRNLKGLAKEINCPI 368
+RA +RRL Q ++G+IIIDYLQLMS GENR EI+ ISR LK LA+E+ PI
Sbjct: 298 VRARARRLVSQ-NQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPI 356
Query: 369 LALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVS 428
+ALSQL+R++E R NKRP++SDLRESG+IEQDAD+++FIYRDE YN +S GIAEIIV
Sbjct: 357 IALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYRDEYYNPHSEKAGIAEIIVG 416
Query: 429 KQRNGPIGNIRLTFSGQYTKFNNF 452
KQRNGP G + L F + +FN+
Sbjct: 417 KQRNGPTGTVELQFHASHVRFNDL 440
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A
{Bacillus phage SPP1}
Length = 444
Score = 686 bits (1774), Expect = 0.0
Identities = 136/448 (30%), Positives = 246/448 (54%), Gaps = 17/448 (3%)
Query: 8 ENKKFRVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSS 67
++ V ++ +EQ+VLG +L + + L ++F H I+ + L
Sbjct: 4 NPEEKTVMLYNEYAEQAVLGSILTEPELIKECP--LTPEHFSPGKHFNIYFTMQDLDRKG 61
Query: 68 HPADVITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVT 127
D ++ + ++GG YL LA ++ S +++ + V + RK I++
Sbjct: 62 QSVDFTSIAARVGE--KLPQLGGFGYLTELAASVASTTTFKQHCQTVSEYFQKRKAISIA 119
Query: 128 DEISSQAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNR 187
+I + + EA S++ I + I L V + I
Sbjct: 120 QQIIENVN-ESDDGPVKPIQEAVSELMEIEASGT--DDDDGSIDEALVTVYEEIES---- 172
Query: 188 GTNDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVA 247
D ++TG+ +GF ELD++T G + + +++A RPSMGKTAF+L ++++ + V
Sbjct: 173 --ADGNITGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDD-VVN 229
Query: 248 IFSMEMSGIQLAMRMLGSVGKLDQHKLRTGR--LSSDDWPRINDSIKKINKSQLYIDETP 305
+ S+EM + R++ + G ++ K++ R +S+DW +++ +I +I+ S + I +
Sbjct: 230 LHSLEMGKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKA 289
Query: 306 SLNVIELRANSRRLSRQ-CGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEI 364
+V + + +R+ R+ GK +++IDYLQL+ ++R +IS+ISR+LK +A+E+
Sbjct: 290 GQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMAREL 349
Query: 365 NCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAE 424
+ ++ALSQL+R +EQRQ+KRP++SDLRESG +EQDAD+I F+YRD+ Y++ S K I E
Sbjct: 350 DVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYRDDYYDKESESKNIVE 409
Query: 425 IIVSKQRNGPIGNIRLTFSGQYTKFNNF 452
+I++K R+GP+G + L F +Y F N
Sbjct: 410 VIIAKHRDGPVGTVSLAFIKEYGNFVNL 437
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A
{Bacillus phage SPP1}
Length = 315
Score = 509 bits (1312), Expect = 0.0
Identities = 112/317 (35%), Positives = 194/317 (61%), Gaps = 12/317 (3%)
Query: 139 GKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTNDNDVTGIS 198
G + + EA S++ I + I L V + I D ++TG+
Sbjct: 1 GSGPVKPIQEAVSELMEIEASGT--DDDDGSIDEALVTVYEEIES------ADGNITGVP 52
Query: 199 TGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQL 258
+GF ELD++T G + + +++A RPSMGKTAF+L ++++ + V + S+EM +
Sbjct: 53 SGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDD-VVNLHSLEMGKKEN 111
Query: 259 AMRMLGSVGKLDQHKLRTGR--LSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANS 316
R++ + G ++ K++ R +S+DW +++ +I +I+ S + I + +V + + +
Sbjct: 112 IKRLIVTAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKT 171
Query: 317 RRLSRQ-CGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLN 375
R+ R+ GK +++IDYLQL+ ++R +IS+ISR+LK +A+E++ ++ALSQL+
Sbjct: 172 RQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLS 231
Query: 376 RSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQRNGPI 435
R +EQRQ+KRP++SDLRESG +EQDAD+I F+YRD+ Y++ S K I E+I++K R+GP+
Sbjct: 232 RQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYRDDYYDKESESKNIVEVIIAKHRDGPV 291
Query: 436 GNIRLTFSGQYTKFNNF 452
G + L F +Y F N
Sbjct: 292 GTVSLAFIKEYGNFVNL 308
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA
replication, ATPase; HET: FLC; 2.50A {Helicobacter
pylori}
Length = 338
Score = 464 bits (1197), Expect = e-164
Identities = 116/319 (36%), Positives = 177/319 (55%), Gaps = 37/319 (11%)
Query: 168 QQIQPLLNRVIKRINKLHNRGTNDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGK 227
+ I+ +L + I + + +VTGI TGF +LD TSG G L+I+ RPSMGK
Sbjct: 2 RNIKEVLESAMDLITENQRK--GSLEVTGIPTGFVQLDNYTSGFNKGSLVIIGARPSMGK 59
Query: 228 TAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRI 287
T+ +N+ A+ + VA+FS+EMS QLA+R L + ++ H L +GRL D W +
Sbjct: 60 TSLMMNMVLS-ALNDDRGVAVFSLEMSAEQLALRALSDLTSINMHDLESGRLDDDQWENL 118
Query: 288 NDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRA 347
+++ +L+ + + + ++R R+L Q ++G+ IDYLQLMS + + R
Sbjct: 119 AKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKERH 178
Query: 348 TEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFI 407
+I+EISR LK LA+E+ PI+AL QLNRSLE R +KRPI+SD+++SG IEQDAD++LF+
Sbjct: 179 EQIAEISRELKTLARELEIPIIALVQLNRSLENRDDKRPILSDIKDSGGIEQDADIVLFL 238
Query: 408 YRDEVYNQNSADKGI----------------------------------AEIIVSKQRNG 433
YR +Y + D I AEIIV+K RNG
Sbjct: 239 YRGYIYQMRAEDNKIDKLKKEGKIEEAQELYLKVNEERRIHKQNGSIEEAEIIVAKNRNG 298
Query: 434 PIGNIRLTFSGQYTKFNNF 452
G + F+ +T++ +
Sbjct: 299 ATGTVYTRFNAPFTRYEDM 317
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET:
DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11
PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Length = 296
Score = 387 bits (996), Expect = e-134
Identities = 49/277 (17%), Positives = 109/277 (39%), Gaps = 14/277 (5%)
Query: 179 KRINKLHNRGTNDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI 238
+RI + + ++ V + +G ++ T G + G++I+V MGK+ F
Sbjct: 3 ERIREHLS---SEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW 59
Query: 239 AIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQ 298
V + +E S + A ++G ++ + + + + + + ++ +
Sbjct: 60 GTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGND 119
Query: 299 --LYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRN 356
D L A + G VII+D++ ++ + S + I +
Sbjct: 120 TFHLYDSFAEAETDRLLAKLAYMRSGLG-CDVIILDHISIVVSASGESDERKMIDNLMTK 178
Query: 357 LKGLAKEINCPILALSQLNRSLEQR---QNKRPIMSDLRESGAIEQDADVILFIYRDEVY 413
LKG AK ++ + L + + + + ++DLR SGA+ Q +D I+ + R++
Sbjct: 179 LKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQG 238
Query: 414 NQNSADKGIAEIIVSKQR-NGPIGNIRLTFSGQYTKF 449
+ + + + K R G G + T +
Sbjct: 239 D----MPNLVLVRILKCRFTGDTGIAGYMEYNKETGW 271
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET:
DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11
e.13.1.2
Length = 503
Score = 287 bits (734), Expect = 5e-92
Identities = 60/417 (14%), Positives = 142/417 (34%), Gaps = 18/417 (4%)
Query: 44 NSDYFYRYDHRLIFKHIIKLINSSHPADVITVFDSLSNTGNAEEI--GGLSYLNSLAQNI 101
SD + ++ K++ + D++TV + + G + + A N
Sbjct: 74 KSDALFGKH---LWNGGKKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASAAKKTCAANY 130
Query: 102 PSAANIRRYAEIVRDRGILRKLITVTDEISSQAFISRGKEVKQILDEAESKIFSIAEKEI 161
+ + RK + ++ + + +E E
Sbjct: 131 EYFDQFEQIILMFDMDEAGRKAVEEAAQVLPAGKVRVAVLPCKDANECHLN-GHDREIME 189
Query: 162 CINKGFQQIQPLLNRVIKRINKLHNRGTNDNDVTGISTGFFELDKITSGLQPGDLIIVAG 221
+ I + + ++ +++ V + +G ++ T G + G++I+V
Sbjct: 190 QVWNAGPWIPDGVVSALSLRERIREHLSSEESVGLLFSGCTGINDKTLGARGGEVIMVTS 249
Query: 222 RPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSS 281
M + F V + +E S + A ++G ++ + + +
Sbjct: 250 GSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREI 309
Query: 282 DDWPRINDSIKKINKSQ--LYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSA 339
+ + + ++ + D L A + G VII+D++ ++ +
Sbjct: 310 IENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLG-CDVIILDHISIVVS 368
Query: 340 NSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQN---KRPIMSDLRESGA 396
S + I + LKG AK ++ + L + + + + ++DLR SGA
Sbjct: 369 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGA 428
Query: 397 IEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQR-NGPIGNI-RLTFSGQYTKFNN 451
+ Q +D I+ + R NQ + + + K R G G + ++ +
Sbjct: 429 LRQLSDTIIALER----NQQGDMPNLVLVRILKCRFTGDTGIAGYMEYNKETGWLEP 481
>2r5u_A Replicative DNA helicase; DNAB, primase, replication, ATP-binding,
autocatal cleavage, DNA replication, DNA-binding,
endonuclease; 1.90A {Mycobacterium tuberculosis}
Length = 200
Score = 238 bits (610), Expect = 2e-77
Identities = 55/177 (31%), Positives = 96/177 (54%), Gaps = 3/177 (1%)
Query: 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADV 72
R PP + +EQSVLGG+LL A + + L FYR H+ ++ I+ L PAD
Sbjct: 25 RQPPQDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYDAILDLYGRGEPADA 84
Query: 73 ITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISS 132
+TV L G IGG YL++L +P+AAN YA IV ++ +LR+L+ +
Sbjct: 85 VTVAAELDRRGLLRRIGGAPYLHTLISTVPTAANAGYYASIVAEKALLRRLVEAGTRVVQ 144
Query: 133 QAFISR-GKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRG 188
+ G +V +++D A+++I+ +A++ +++ F ++ LL + I+ + + G
Sbjct: 145 YGYAGAEGADVAEVVDRAQAEIYDVADRR--LSEDFVALEDLLQPTMDEIDAIASSG 199
>1b79_A DNAB helicase; hexamer, DNA replication, hydrolase; 2.30A
{Escherichia coli} SCOP: a.81.1.1 PDB: 1jwe_A
Length = 119
Score = 182 bits (464), Expect = 1e-56
Identities = 55/114 (48%), Positives = 76/114 (66%)
Query: 4 PFNTENKKFRVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKL 63
+ + +VPPHSIE+EQSVLGGL+LDN WD +A+ + +D FY HR IF + +L
Sbjct: 6 ERDPQVAGLKVPPHSIEAEQSVLGGLMLDNERWDDVAERVVADDFYTRPHRHIFTEMARL 65
Query: 64 INSSHPADVITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDR 117
S P D+IT+ +SL G + +GG +YL L++N PSAANI YA+IVR+R
Sbjct: 66 QESGSPIDLITLAESLERQGQLDSVGGFAYLAELSKNTPSAANISAYADIVRER 119
>3gxv_A Replicative DNA helicase; hexameric helicase, primase, replication,
ATP-binding, autocatalytic cleavage, DNA replication;
2.20A {Helicobacter pylori} PDB: 3gxv_D 3gxv_C
Length = 123
Score = 170 bits (433), Expect = 4e-52
Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 5/123 (4%)
Query: 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADV 72
+ E+ VL G++L N +++ L FY + L F+ +KL P D
Sbjct: 5 KHLQQLQNIERIVLSGIVLANHKIEEVHSVLEPSDFYYPPNGLFFEIALKLHEEDCPIDE 64
Query: 73 ITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISS 132
+ + +E ++ + NI Y E +++ I RKL + + I
Sbjct: 65 NFIRQKMPKDKQIKEEDLVAIFAA-----SPIDNIEAYVEEIKNASIKRKLFGLANTIRE 119
Query: 133 QAF 135
QA
Sbjct: 120 QAH 122
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 70.1 bits (171), Expect = 1e-13
Identities = 38/252 (15%), Positives = 71/252 (28%), Gaps = 35/252 (13%)
Query: 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIA---------IENKLPVAIFSMEM 253
LD + + G + + GK+ +L + IA PV E
Sbjct: 19 PLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED 78
Query: 254 SGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELR 313
+ R+ L H R + D I SL I
Sbjct: 79 PPTAIHHRLH----ALGAHLSAEERQAVADGLLI-------------QPLIGSLPNIMAP 121
Query: 314 ANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQ 373
L R ++++D L+ EN + ++++ ++ +A + C I+ L
Sbjct: 122 EWFDGLKRAAEGRRLMVLDTLRRFHIEE--ENASGPMAQVIGRMEAIAADTGCSIVFLHH 179
Query: 374 LNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRD------EVYNQNSADKGIAEIIV 427
++ R S + + ++ E + + V
Sbjct: 180 ASKG-AAMMGAGDQQQASRGSSVLVDNIRWQSYLSSMTSAEAEEWGVDDDQRRFFVRFGV 238
Query: 428 SKQRNGPIGNIR 439
SK G R
Sbjct: 239 SKANYGAPFADR 250
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 69.1 bits (168), Expect = 2e-12
Identities = 57/376 (15%), Positives = 124/376 (32%), Gaps = 105/376 (27%)
Query: 114 VRD--RGILRK-----LITVTDEISSQAFI-----SRGKE-VKQILDEAESKIFS-IAEK 159
V+D + IL K +I D +S + S+ +E V++ ++E + +
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97
Query: 160 EICINKGFQQIQPLLNRVIKRINKLHNRGTNDND------VTGISTGFFELDKITSGLQP 213
I +Q QP + + + +R NDN V+ + + +L + L+P
Sbjct: 98 ---IKT--EQRQPSMMT--RMYIEQRDRLYNDNQVFAKYNVSRLQP-YLKLRQALLELRP 149
Query: 214 GDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHK 273
+++ G GKT +L++ ++ K+ IF + ++ + +
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL-------------NLKNCNSPE 196
Query: 274 LRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRL-SRQCGKIGVIIID 332
L + I S+ L + ++A RRL + + ++++
Sbjct: 197 TVLEMLQK-----LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 333 YLQ--------------LMS------ANSRGENRATEISEISRNLKG---------LAKE 363
+Q L++ + T IS + + L K
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS-LDHHSMTLTPDEVKSLLLKY 310
Query: 364 INCPI------------LALSQLNRSLEQR----QNKRPIMSDLRESGAIEQDADVI--- 404
++C LS + S+ N + + D + + IE +V+
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD-KLTTIIESSLNVLEPA 369
Query: 405 --------LFIYRDEV 412
L ++
Sbjct: 370 EYRKMFDRLSVFPPSA 385
Score = 59.5 bits (143), Expect = 1e-09
Identities = 63/404 (15%), Positives = 143/404 (35%), Gaps = 104/404 (25%)
Query: 4 PFNTENKKFRVPPHSIESEQSVLGGLL-----------LDNTAWDKIADCLNSDYFYRYD 52
+ + + I S Q+ L LL L N + + F +
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-QNA--KAW--NAF---N 263
Query: 53 HR---LI---FKHIIKLINSSHPADVITVFDSLSNTGNAEEIGGL--SYLNSLAQNIPSA 104
L+ FK + ++++ + S++ T +E+ L YL+ Q++P
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT--PDEVKSLLLKYLDCRPQDLPRE 321
Query: 105 AN------IRRYAEIVRDRGILR----KLITVTDEISS--QAFISRGKEVKQILDEAESK 152
+ AE +RD G+ K + D++++ ++ + +L+ AE +
Sbjct: 322 VLTTNPRRLSIIAESIRD-GLATWDNWKHVN-CDKLTTIIESSL-------NVLEPAEYR 372
Query: 153 -------IFS----IAEKEICI---NKGFQQIQPLLNRVIKR--INK--------LHN-- 186
+F I + + + + ++N++ K + K + +
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 187 ---RGTNDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI-AIEN 242
+ +N+ + + I DLI P + + +S +IG H+ IE+
Sbjct: 433 LELKVKLENEYA-LHRSIVDHYNIPKTFDSDDLIP----PYLDQYFYS-HIGHHLKNIEH 486
Query: 243 KLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYID 302
+ +F M + L R L + K+R + + I ++++++ + YI
Sbjct: 487 PERMTLFRM----VFLDFRFL-------EQKIRHDSTAWNASGSILNTLQQLKFYKPYI- 534
Query: 303 ETPSLNVIELRANS-RRLSRQCGKIGVI--IIDYLQ--LMSANS 341
+ E N+ + + + D L+ LM+ +
Sbjct: 535 -CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE 577
Score = 54.9 bits (131), Expect = 4e-08
Identities = 61/419 (14%), Positives = 125/419 (29%), Gaps = 144/419 (34%)
Query: 24 SVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITVFDSLSNTG 83
+ + + + K+ ++ F+ + L N + P V+ + L
Sbjct: 164 TWVALDVCLS---YKVQCKMDFKIFW-----------LNLKNCNSPETVLEMLQKLLYQI 209
Query: 84 NAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQAFISRGKEVK 143
+ + ++NI+ ++ LR+L+ + +
Sbjct: 210 DP----------NWTSRSDHSSNIKLRIHSIQAE--LRRLLK--SKPYENCLL------- 248
Query: 144 QILDEAES----KIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTNDNDVT---- 195
+L ++ F+++ C +I LL T VT
Sbjct: 249 -VLLNVQNAKAWNAFNLS----C------KI--LLT-------------TRFKQVTDFLS 282
Query: 196 GISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSG 255
+T LD + L P + K+ + LP E+
Sbjct: 283 AATTTHISLDHHSMTLTPDE----------VKSLLLKYLDCRP---QDLPR-----EVLT 324
Query: 256 IQ-LAMRMLGSVGKLDQHKLRTGRLSSDDWPRIN-DSIKKINKSQLYIDETPSLNVI--- 310
+ ++ +R G + D+W +N D + I +S SLNV+
Sbjct: 325 TNPRRLSIIAE-------SIRDGLATWDNWKHVNCDKLTTIIES--------SLNVLEPA 369
Query: 311 ELRANSRRLSRQCGKI---GVII-IDYLQLMSANSRGENRATEISEISRNLKGLAKEINC 366
E R RLS + I L L+ + ++ + + L K
Sbjct: 370 EYRKMFDRLS-----VFPPSAHIPTILLSLIWFDVIKS----DVMVV---VNKLHK---- 413
Query: 367 PILALSQLNRSLEQRQNKRPIMS----DLRESGAIEQDADV---ILFIYR-DEVYNQNS 417
SL ++Q K +S L +E + + I+ Y + ++ +
Sbjct: 414 ---------YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463
Score = 41.4 bits (96), Expect = 6e-04
Identities = 27/143 (18%), Positives = 51/143 (35%), Gaps = 34/143 (23%)
Query: 36 WDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITVFDS-----------LSNTGN 84
D I L YFY + I H+ + + +T+F + +
Sbjct: 462 DDLIPPYL-DQYFYSH----IGHHLKNI----EHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 85 AEEIGGLSYLNSLAQNIPSAANIRRYAEIVRD-----RGILRKLITVTDEISSQAFISRG 139
A G S LN+L Q ++ Y + D ++ ++ +I S+
Sbjct: 513 AWNASG-SILNTLQQ-------LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564
Query: 140 KEVKQI-LDEAESKIFSIAEKEI 161
++ +I L + IF A K++
Sbjct: 565 TDLLRIALMAEDEAIFEEAHKQV 587
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 65.7 bits (160), Expect = 2e-12
Identities = 34/230 (14%), Positives = 70/230 (30%), Gaps = 19/230 (8%)
Query: 187 RGTNDNDVTGISTGFFELDKITS-GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLP 245
R V + +G D++ G G +++ G GKT F+ A E P
Sbjct: 2 RIMAYQPVRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEP 61
Query: 246 VAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETP 305
++E L M S G + + G+++ D + K L
Sbjct: 62 GVFVTLEERARDLRREMA-SFGWDFEKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNV 120
Query: 306 SLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEIN 365
+ + + + ++ID + ++ +I E+ L + E+
Sbjct: 121 DNFLRYIYRVVKAI-----NAKRLVIDSIPSIALRL---EEERKIREVLLKLNTILLEMG 172
Query: 366 CPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQ 415
+ ++ L G E A ++ + E +
Sbjct: 173 VTTILTTEAPDPQH---------GKLSRYGIEEFIARGVIVLDLQEKNIE 213
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 67.8 bits (165), Expect = 4e-12
Identities = 86/483 (17%), Positives = 158/483 (32%), Gaps = 159/483 (32%)
Query: 91 LSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVT------DEISSQA--------FI 136
LS+ SL + A ++++ + L T DE ++ A ++
Sbjct: 11 LSH-GSLEHVLLVPTASFFIASQLQEQ-FNKILPEPTEGFAADDEPTTPAELVGKFLGYV 68
Query: 137 SRGKE----------VKQILDEAESK------IFSIA-----EKEICINKGFQQIQPLLN 175
S E + L E E+ I ++A E + + K + I+ +
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT 128
Query: 176 --RVIKR-INKLHN----RGTNDNDVT--------GISTGFF-ELDKI--TSGLQPGDLI 217
+ KR +K N R + + G + +F EL + T + GDLI
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLI 188
Query: 218 IVAGR--------PSMGKTAFS--LNIGEHIAIENKLP------VAIFSMEMSGI-QLA- 259
+ + F+ LNI E + + P S + G+ QLA
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH 248
Query: 260 ----MRMLG-SVGKLDQHKLR--TGRL----------SSDDWPRINDSIKKINKSQLYI- 301
++LG + G+L + L+ TG +D W S++K +I
Sbjct: 249 YVVTAKLLGFTPGELRSY-LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG 307
Query: 302 ----DETPSLNVIELRANSRRLSRQCGK------IGVIIIDYLQLMS----ANSRG-ENR 346
+ P+ + L + S + + + + + Q+ NS +
Sbjct: 308 VRCYEAYPNTS---LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGK 364
Query: 347 ATEISEI--SRN--LKGLAKEINCPILALSQLNRSLEQR-------QNK-----R----- 385
EIS + ++N + G P +L LN +L + Q++ R
Sbjct: 365 QVEISLVNGAKNLVVSG-------PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFS 417
Query: 386 ----PIM----SDLRESGA--IEQDADVILFIYRDE-----VY------NQNSADKGIAE 424
P+ S L + I +D + + VY + I+E
Sbjct: 418 NRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477
Query: 425 IIV 427
IV
Sbjct: 478 RIV 480
Score = 54.7 bits (131), Expect = 5e-08
Identities = 53/326 (16%), Positives = 110/326 (33%), Gaps = 119/326 (36%)
Query: 132 SQAFISRGKE-------VKQILDEAESKI-----FSIAE------KEICINKGFQQIQPL 173
SQ G + + + + A++ FSI + + I+ G ++ +
Sbjct: 1626 SQE-QGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK-- 1682
Query: 174 LNRVIKRINKLHNRGTNDNDVTGISTG---FFELDKITSGL---------------QPGD 215
RI + ++ + V G F E+++ ++ QP
Sbjct: 1683 ------RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA- 1735
Query: 216 LIIVAGRPSMGKTAF------------------SLNIGEHIAIENKLPVA---IFSMEMS 254
+ M K AF SL GE+ A L + + S+E S
Sbjct: 1736 --LTL----MEKAAFEDLKSKGLIPADATFAGHSL--GEYAA----L-ASLADVMSIE-S 1781
Query: 255 GIQL-AMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELR 313
+++ R G Q + D+ R N + IN ++ S + L+
Sbjct: 1782 LVEVVFYR-----GMTMQVAV-----PRDELGRSNYGMIAINPGRV----AASFSQEALQ 1827
Query: 314 ANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQ 373
R+ ++ G + V I++Y N + + +L+ L N L+
Sbjct: 1828 YVVERVGKRTGWL-VEIVNY------NVENQQYV-----AAGDLRALDTVTNV----LNF 1871
Query: 374 LNRSLEQRQNKRPIMSDLRESGAIEQ 399
+ ++ + +L++S ++E+
Sbjct: 1872 IKL-------QKIDIIELQKSLSLEE 1890
Score = 48.1 bits (114), Expect = 5e-06
Identities = 41/251 (16%), Positives = 65/251 (25%), Gaps = 107/251 (42%)
Query: 51 YDHRLIFKHIIKLINSS-------HPADVITVFDSLSNTGNA---------------EEI 88
D +L + I K IN + LS T +
Sbjct: 1697 VDGKLKTEKIFKEINEHSTSYTFRSEKGL------LSATQFTQPALTLMEKAAFEDLKSK 1750
Query: 89 G---------GLS---Y--LNSLAQNIP-SAANIRRYAEIVRDRGILRKLITVTDEISSQ 133
G G S Y L SLA + + E+V RG+ ++ DE+
Sbjct: 1751 GLIPADATFAGHSLGEYAALASLADVMSIESL-----VEVVFYRGMTMQVAVPRDELGRS 1805
Query: 134 AF----ISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGT 189
+ I+ G+ EA + K +I V
Sbjct: 1806 NYGMIAINPGRVAASFSQEALQYVVERVGKR---TGWLVEI------V------------ 1844
Query: 190 NDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSL----NIGEHIAIEN--- 242
N N Q + AG +L N+ I ++
Sbjct: 1845 NYN---------------VENQQ----YVAAG------DLRALDTVTNVLNFIKLQKIDI 1879
Query: 243 -KLPVAIFSME 252
+L + S+E
Sbjct: 1880 IELQKS-LSLE 1889
Score = 45.4 bits (107), Expect = 4e-05
Identities = 46/282 (16%), Positives = 78/282 (27%), Gaps = 93/282 (32%)
Query: 44 NSDYF------YR-YDH---RLIFKHIIKLIN-SSHPADVITVF----DSLSNTGNAEEI 88
DYF Y+ Y LI L D VF + L N
Sbjct: 166 TDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Query: 89 GGLSYLNSLAQNIP-----SAANIRRYAEI-------VRDRGILRKLITVTDEISSQAFI 136
YL S+ + P A+ A++ +R L+ + + + I
Sbjct: 226 PDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSY--LKGATGHSQGLVTAVAI 283
Query: 137 SRGKEVKQILDEAESKI---FSIAEKEICINKGF--QQIQPL--LNRVIKRINKLHNRGT 189
+ + I F I G + P L I + +N G
Sbjct: 284 AETDSWESFFVSVRKAITVLFFI---------GVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 190 -----NDNDVTGISTGFFE--LDKITSGLQPGDLI-----------IVAGRPSMGKTAFS 231
+ ++ ++ + ++K S L G + +V+G P S
Sbjct: 335 PSPMLS---ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQ------S 385
Query: 232 LNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHK 273
L G+ L +R + LDQ +
Sbjct: 386 L---------------------YGLNLTLRKAKAPSGLDQSR 406
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Length = 235
Score = 60.8 bits (148), Expect = 9e-11
Identities = 38/179 (21%), Positives = 65/179 (36%), Gaps = 17/179 (9%)
Query: 197 ISTGFFELDKITS-GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSG 255
+STG + DK+ G+ G I + G P GKT FSL+ + P + E S
Sbjct: 5 LSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL-RDGDPCIYVTTEESR 63
Query: 256 IQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRAN 315
+ + Q I+ +K+ ++ TP V ++
Sbjct: 64 DSIIRQA-------KQFNWDFEEYIEKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEA 116
Query: 316 SRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQL 374
++L ++ID + + + R +IS LK + + N I A SQ
Sbjct: 117 KQKLGY---GKARLVIDSVSALFLDKPAMAR-----KISYYLKRVLNKWNFTIYATSQY 167
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 60.1 bits (146), Expect = 2e-10
Identities = 30/181 (16%), Positives = 64/181 (35%), Gaps = 16/181 (8%)
Query: 197 ISTGFFELDKITS-GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSG 255
+ TG +D+I G+ ++++++G P GKT FS + + P ++E
Sbjct: 5 VKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGL-KMGEPGIYVALEEHP 63
Query: 256 IQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRAN 315
+Q+ M Q + D+ ++ ++ ++R
Sbjct: 64 VQVRQNM-------AQFGWDVKPYEEKGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREF 116
Query: 316 SRRLSRQCGKIG--VIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQ 373
L + I +++D + + N R I LK + C + +SQ
Sbjct: 117 IEVLRQAIRDINAKRVVVDSVTTLYINKPAMAR-----SIILQLKRVLAGTGCTSIFVSQ 171
Query: 374 L 374
+
Sbjct: 172 V 172
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 60.7 bits (147), Expect = 4e-10
Identities = 31/221 (14%), Positives = 63/221 (28%), Gaps = 30/221 (13%)
Query: 197 ISTGFFELDKITS-GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSG 255
+ T D I+ GL G +V+G GKT FS+ + IE P + E +
Sbjct: 21 MRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETP 80
Query: 256 IQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRAN 315
+ D +++ I + + + +L A
Sbjct: 81 QDIIKNAR--------------SFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSAL 126
Query: 316 SRRLSRQCGKIG--VIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQ 373
R++ K + ID + + + + L K+I + ++
Sbjct: 127 IERINYAIQKYRARRVSIDSVTSVFQQYDASSV---VRRELFRLVARLKQIGATTVMTTE 183
Query: 374 LNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYN 414
+ G E +D ++ +
Sbjct: 184 RI----------EEYGPIARYGVEEFVSDNVVILRNVLEGE 214
Score = 58.8 bits (142), Expect = 2e-09
Identities = 31/175 (17%), Positives = 54/175 (30%), Gaps = 22/175 (12%)
Query: 175 NRVIKRINKLHNRGTNDNDVTGISTGFFELDKITS-GLQPGDLIIVAGRPSMGKTAFSLN 233
+ I R T + +S+G LD++ G +I+ G GKT
Sbjct: 241 DHGINIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSR 300
Query: 234 IGEHIAIENKLPVAIFSMEMSGIQLAMRM---------LGSVGKLDQHKLRTGRLSSDD- 283
E+ A NK +F+ E S QL + L +D
Sbjct: 301 FVEN-ACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDH 359
Query: 284 WPRINDSIKKINKSQLYIDETPSLNVI-------ELRANSRRLSRQCGKIGVIII 331
I I +++ ID SL+ + R ++ + + +
Sbjct: 360 LQIIKSEINDFKPARIAID---SLSALARGVSNNAFRQFVIGVTGYAKQEEITGL 411
>2cvh_A DNA repair and recombination protein RADB; filament formation,
homologous recombination, ATPase domain,
hyperthermophIle; HET: DNA; 2.20A {Thermococcus
kodakarensis} PDB: 2cvf_A*
Length = 220
Score = 42.6 bits (101), Expect = 9e-05
Identities = 28/177 (15%), Positives = 56/177 (31%), Gaps = 32/177 (18%)
Query: 197 ISTGFFELDKITSG-LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME--M 253
+STG LD + G PG L V G + GKT +L + + VA E
Sbjct: 2 LSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLAL----QTGLLSGKKVAYVDTEGGF 57
Query: 254 SGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELR 313
S +L + ++ + + +
Sbjct: 58 SPERLVQMAE----------------------TRGLNPEEALSRFILFTPSDFKEQRRVI 95
Query: 314 ANSRRLSRQCGKIGVIIIDYLQLM-SANSRGENRATEISEISRNLKGLAKEINCPIL 369
+ ++ ++++D + A E+S + L +A++ N P++
Sbjct: 96 GSLKKTVDS--NFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVI 150
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding
protein, ring protein, octamer, AAA ATPase; 3.20A {Homo
sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Length = 343
Score = 42.9 bits (101), Expect = 1e-04
Identities = 33/190 (17%), Positives = 67/190 (35%), Gaps = 34/190 (17%)
Query: 193 DVTGISTGFFELDKITS-GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251
V I+TG E DK+ G++ + G GKT S + + +LP A
Sbjct: 100 MVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSH----TLCVTAQLPGAGGYP 155
Query: 252 EMSGIQLAMRMLGSVGKLDQ-HKLRTGRLSS---DDWPRINDSIKKINKSQLYIDETPSL 307
G + +D + R RL + + + ++ Y +
Sbjct: 156 G-----------GKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY-TSEHQM 203
Query: 308 NVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGE--------NRATEISEISRNLKG 359
+++ A G ++IID + A R + R +++++ L+
Sbjct: 204 ELLDYVAAKFHEEA--GIFKLLIIDSI---MALFRVDFSGRGELAERQQKLAQMLSRLQK 258
Query: 360 LAKEINCPIL 369
+++E N +
Sbjct: 259 ISEEYNVAVF 268
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 41.1 bits (95), Expect = 2e-04
Identities = 9/27 (33%), Positives = 18/27 (66%), Gaps = 5/27 (18%)
Query: 290 SIKKINKS-QLYIDET-PSLNV---IE 311
++KK+ S +LY D++ P+L + +E
Sbjct: 21 ALKKLQASLKLYADDSAPALAIKATME 47
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA
binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A
{Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A*
2zuc_A* 2zud_A*
Length = 324
Score = 40.5 bits (95), Expect = 6e-04
Identities = 41/251 (16%), Positives = 85/251 (33%), Gaps = 57/251 (22%)
Query: 140 KEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTNDNDVTGIST 199
I KI A ++ F+ +V IST
Sbjct: 48 SVAAGIPLSTAQKIIKEARD--ALDIRFK--------------TALEVKKERMNVKKIST 91
Query: 200 GFFELDKITSG-LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQL 258
G LD + +G ++ + G GKT +++ +LP E G+
Sbjct: 92 GSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCH----QLSVNVQLPP-----EKGGLS- 141
Query: 259 AMRMLGSVGKLD-QHKLRTGRLSS------DDWPRINDSIKKINKSQLYIDETPSLNVIE 311
G +D + R R+ + D + ++I YI + + I
Sbjct: 142 -----GKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNI-------YYIRAINTDHQIA 189
Query: 312 LRANSRRLSRQCGKIGVIIIDYLQLMSANSRGE--------NRATEISEISRNLKGLAKE 363
+ + + L + I +I++D ++++ R E R ++++ L LA+
Sbjct: 190 IVDDLQELVSKDPSIKLIVVD---SVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEV 246
Query: 364 INCPILALSQL 374
+ ++ +Q+
Sbjct: 247 YDIAVIITNQV 257
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric
ring, heptamer, ring, oligomer, RAD51 polymerizat motif;
HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1
c.37.1.11
Length = 349
Score = 40.4 bits (94), Expect = 8e-04
Identities = 35/192 (18%), Positives = 72/192 (37%), Gaps = 25/192 (13%)
Query: 193 DVTGISTGFFELDKITSG-LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251
+ ISTG LDK+ G ++ + V G GKT + +A+ +LP +
Sbjct: 109 TIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAH----TLAVMVQLPPEEGGL 164
Query: 252 EMSGIQLAMRMLGSVGKLD-QHKLRTGRLSS---DDWPRINDSIKKINKSQLYIDETPSL 307
GSV +D ++ R R+ + ++ +K I ++ + L
Sbjct: 165 N-----------GSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQML 213
Query: 308 NVIELRANSRRLSRQCGKIGVIIID-YLQLMSANSRGEN----RATEISEISRNLKGLAK 362
V + + L + ++I+D + G R ++++ +L LA
Sbjct: 214 LVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLAN 273
Query: 363 EINCPILALSQL 374
+ + +Q+
Sbjct: 274 LYDIAVFVTNQV 285
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous
recombination, breast cancer susceptibility, RECA-like
ATPase, protein complex; HET: DNA MSE; 1.70A {Homo
sapiens} SCOP: c.37.1.11
Length = 243
Score = 37.5 bits (87), Expect = 0.005
Identities = 37/190 (19%), Positives = 71/190 (37%), Gaps = 34/190 (17%)
Query: 192 NDVTGISTGFFELDKIT-SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFS 250
+++ I+TG ELDK+ G++ G + + G GKT +A+ +LP+
Sbjct: 1 SEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICH----TLAVTCQLPI---- 52
Query: 251 MEMSGIQLAMRMLGSVGKLD-QHKLRTGRL---SSDDWPRINDSIKKINKSQLYIDETPS 306
+ G + G +D + R RL + +D + + ++ +
Sbjct: 53 -DRGGGE------GKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF------ 99
Query: 307 LNVIELRANSRRLSRQC--GKIGVIIIDY---LQLMSANSRGE--NRATEISEISRNLKG 359
N + S + ++I+D L + RGE R ++ R L
Sbjct: 100 -NTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLR 158
Query: 360 LAKEINCPIL 369
LA E ++
Sbjct: 159 LADEFGVAVV 168
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP
complex, calcium stimulation, RECA, DMC1; HET: DNA ANP;
1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11
PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A*
3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A*
3etl_A* 4dc9_A* 2gdj_A*
Length = 322
Score = 36.9 bits (85), Expect = 0.009
Identities = 32/187 (17%), Positives = 59/187 (31%), Gaps = 19/187 (10%)
Query: 193 DVTGISTGFFELDKIT-SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251
V +ST ELD + GL+ + AG GKT + + P +F
Sbjct: 76 TVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMH----QSCVNLQNPEFLFYD 131
Query: 252 EMSGIQLAMRMLGSVGKLD-QHKLRTGRLS---SDDWPRINDSIKKINKSQLYIDETPSL 307
E + +D + R R+ + ++ Y + +
Sbjct: 132 E-EAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAY-NSDMQM 189
Query: 308 NVIELRANSRRLSRQCGKIGVIIID-----YLQLMSANSRGENRATEISEISRNLKGLAK 362
E L ++ I +++ID + + + R ++ L LA
Sbjct: 190 LFAEKIE---DLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLAD 246
Query: 363 EINCPIL 369
NC +L
Sbjct: 247 LFNCVVL 253
>2r6a_C DNAG primase, helicase binding domain, replicative helicase;
replication, DNAB; 2.90A {Geobacillus
stearothermophilus} PDB: 2r6c_G 1z8s_A*
Length = 143
Score = 34.4 bits (79), Expect = 0.028
Identities = 10/69 (14%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADV 72
++ P +E+ +L ++ + + + F +HR + +I H AD
Sbjct: 1 KLLPAFQNAERLLLAHMMRSRDVALVVQERIG-GRFNIEEHRALAAYIYAFYEEGHEADP 59
Query: 73 ITVFDSLSN 81
+ +
Sbjct: 60 GALISRIPG 68
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA
damage, DNA recombinat repair, nucleotide-binding; HET:
DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Length = 400
Score = 35.5 bits (81), Expect = 0.036
Identities = 39/240 (16%), Positives = 87/240 (36%), Gaps = 40/240 (16%)
Query: 153 IFSIAEKEICINKGF--QQIQPLLNRVIKRINKLHNRGTN----DNDVTGISTGFFELDK 206
+ K++ KG + LLN + + + +++ ++TG LD
Sbjct: 110 VAYAPRKDLLEIKGISEAKADKLLNEAARLVPMGFVTAADFHMRRSELICLTTGSKNLDT 169
Query: 207 ITSG-LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGS 265
+ G ++ G + + G GK+ +A+ ++P+ I E G
Sbjct: 170 LLGGGVETGSITELFGEFRTGKSQLCH----TLAVTCQIPLDIGGGE-----------GK 214
Query: 266 VGKLDQ-HKLRTGRLSS---DDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSR 321
+D R RL S +D++ + ++ Y N ++
Sbjct: 215 CLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY-------NADHQLRLLDAAAQ 267
Query: 322 QC--GKIGVIIIDYLQLM---SANSRGE--NRATEISEISRNLKGLAKEINCPILALSQL 374
+ +I++D + + + RGE R +++ R L+ LA + ++ +Q+
Sbjct: 268 MMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327
>3kvn_X Esterase ESTA; beta barrel, alpha-beta-alpha motif, cell membrane,
cell out membrane, hydrolase, membrane, transmembrane;
HET: C8E; 2.50A {Pseudomonas aeruginosa}
Length = 632
Score = 32.8 bits (74), Expect = 0.22
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 59 HIIKLINSSHPADVITVF-DSLSNTGNAEEIGGLSYLNSLAQNIPSA 104
H + + P + VF DSLS+ G + G + S N
Sbjct: 4 HHHHHLEAPSPYSTLVVFGDSLSDAGQFPDPAGPAGSTSRFTNRVGP 50
>3io5_A Recombination and repair protein; storage dimer, inactive
conformation, RECA like core domain, binding, DNA
damage, DNA recombination; 2.40A {Enterobacteria phage
T4}
Length = 333
Score = 32.1 bits (73), Expect = 0.37
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 192 NDVTGISTGFFELD-----KITSGLQPGDLIIVAGRPSMGKTAFSLNI 234
+ + + T ++ +IT G+Q G L+I+AG K+ F L +
Sbjct: 2 SHMDVVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTM 48
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 31.5 bits (72), Expect = 0.37
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 204 LDKITSGLQPGDLII-VAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251
I + G L++ + G GKT + + + + E + V +F M
Sbjct: 11 CKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR-EQGISVCVFHM 58
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel,
membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP:
f.46.1.1 PDB: 2v4d_A 1t5e_A
Length = 369
Score = 31.1 bits (71), Expect = 0.75
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 4/23 (17%)
Query: 207 ITSGLQPGDLIIVAG----RPSM 225
+T GL GD II G +P +
Sbjct: 314 VTEGLNAGDKIITEGLQFVQPGV 336
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 30.8 bits (69), Expect = 0.85
Identities = 17/145 (11%), Positives = 43/145 (29%), Gaps = 14/145 (9%)
Query: 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRM 262
E K+ L+ L ++ G +GK++ + + + I E+ + +
Sbjct: 20 ESRKLEESLENYPLTLLLGIRRVGKSSLLRA-----FLNERPGILIDCRELYAERGHITR 74
Query: 263 LGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQ 322
+ +L + S +N + +L + E + +L
Sbjct: 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRE-LNDLGEELGEF--- 130
Query: 323 CGKIGVIIIDYLQLMSANSRGENRA 347
++ D Q + +
Sbjct: 131 -----IVAFDEAQYLRFYGSRGGKE 150
>3naj_A Galectin-8; sugar binding protein; HET: GAL BGC; 2.80A {Homo
sapiens} PDB: 3ojb_A
Length = 291
Score = 30.5 bits (68), Expect = 0.94
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 206 KITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAI 248
I L PG LI++ G F +++ +++ + VA
Sbjct: 22 TIPDQLDPGTLIVIRGHVPSDADRFQVDLQNGSSMKPRADVAF 64
>2z1u_A Hydrogenase expression/formation protein HYPE; alpha-beta fold,
beta barrel, lyase; HET: ATP; 2.00A {Desulfovibrio
vulgaris subsp} PDB: 2z1t_A*
Length = 343
Score = 30.7 bits (70), Expect = 0.98
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 12/48 (25%)
Query: 194 VTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH-IAI 240
TGI + +PGD I+++G ++G+H + I
Sbjct: 145 TTGIGEILVDPAPSGDRARPGDAILISG-----------SMGDHGLTI 181
>3ap9_A Galectin-8; beta-sandwich, carbohydrate/sugar binding, lacto-N
fucopentaose III, sugar binding protein; HET: GAL FUC
NAG BGC; 1.33A {Homo sapiens} PDB: 3ap4_A 3ap5_A*
3ap6_A* 3ap7_A* 3apb_A 2yv8_A 2yxs_A*
Length = 154
Score = 29.2 bits (65), Expect = 1.5
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 206 KITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAI 248
I L PG LI++ G F +++ +++ + VA
Sbjct: 22 TIPDQLDPGTLIVIRGHVPSDADRFQVDLQNGSSVKPRADVAF 64
>3i8t_A Galectin-4; S-type lectin, carbohydrate binding, molecular
recognition, sugar binding protein; HET: LBT; 2.10A {Mus
musculus} PDB: 2dyc_A
Length = 164
Score = 29.2 bits (65), Expect = 1.8
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 206 KITSGLQPGDLIIVAGRPSMGKTAFSLN 233
I GL G + + G F +N
Sbjct: 34 PIPGGLSVGMSVYIQGMAKENMRRFHVN 61
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown
function, PSI-2, protein struct initiative; 1.60A
{Pyrococcus horikoshii}
Length = 260
Score = 29.4 bits (65), Expect = 1.9
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 197 ISTGFFELDKITSGLQPGDLIIVAGR-PSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSG 255
+S ELD+ ++ LI++ S I +++ V +FS+
Sbjct: 3 LSWEIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSR-KLKSDNLVGMFSISYP- 60
Query: 256 IQLAMRMLGSVGKLDQHKLRTGRL 279
+QL +R+L G L RL
Sbjct: 61 LQLIIRILSRFGVDVIKYLENHRL 84
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 29.6 bits (66), Expect = 2.2
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 204 LDKITSGLQPGDLIIVAGRPSMGKTAFSLNI----GEHIAIENKLPVAIFSMEMSGIQLA 259
++ I S G +++AG P GKTA +L I G + + ++S E+ ++
Sbjct: 53 VELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVL 112
Query: 260 MRML 263
M
Sbjct: 113 MENF 116
>2d6m_A Galectin-9, lectin, galactose binding, soluble 9; beta sandwich,
carbohydrate binding protein, sugar binding protein;
HET: LBT; 1.60A {Mus musculus} PDB: 2d6l_X 2d6k_A*
2d6n_A* 2d6p_A* 2d6o_X*
Length = 159
Score = 28.8 bits (64), Expect = 2.2
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 206 KITSGLQPGDLIIVAGRPSMGKTAFSLNI 234
I GLQ G + + G F +N
Sbjct: 22 PIQGGLQEGLQVTLQGTTKSFAQRFVVNF 50
>3zsj_A Galectin-3; sugar binding protein; HET: LAT; 0.86A {Homo sapiens}
PDB: 2nmn_A* 2nn8_A* 2nmo_A* 3t1m_A* 3t1l_A* 1kjl_A*
1kjr_A* 1a3k_A* 2xg3_A* 3zsk_A 3zsl_A 3zsm_A 3ayc_A*
3aya_A* 3ayd_A* 3aye_A*
Length = 138
Score = 28.3 bits (63), Expect = 2.3
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 207 ITSGLQPGDLIIVAGRPSMGKTAFSLNI--GEHIAIE 241
+ G+ P LI + G +L+ G +A
Sbjct: 10 LPGGVVPRMLITILGTVKPNANRIALDFQRGNDVAFH 46
>2yro_A Galectin-8; GAL-BIND lectin, sugar binding, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 155
Score = 28.8 bits (64), Expect = 2.4
Identities = 5/29 (17%), Positives = 17/29 (58%)
Query: 206 KITSGLQPGDLIIVAGRPSMGKTAFSLNI 234
++ + + PG ++V G + +F++++
Sbjct: 22 RLNTPMGPGRTVVVKGEVNANAKSFNVDL 50
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE);
structural genomics, PSI-2, protein structure
initiative; 2.80A {Cupriavidus metallidurans}
Length = 359
Score = 29.3 bits (66), Expect = 2.7
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 207 ITSGLQPGDLIIVAG 221
+ SGL GD ++V
Sbjct: 330 VKSGLSAGDRVVVKE 344
>1hlc_A Human lectin; HET: GAL BGC; 2.90A {Homo sapiens} SCOP: b.29.1.3
Length = 129
Score = 28.4 bits (63), Expect = 2.7
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 203 ELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGE 236
EL+ ++PG + + G + G F +N+G+
Sbjct: 1 ELEVKNMDMKPGSTLKITGSIADGTDGFVINLGQ 34
>2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE] hydrogenase
maturation, ATPase, transferase; 1.55A {Thermococcus
kodakarensis} SCOP: d.79.4.1 d.139.1.1 PDB: 2z1f_A
Length = 338
Score = 29.2 bits (66), Expect = 3.0
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 14/48 (29%)
Query: 194 VTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH-IAI 240
GI G E +G + GD ++V+G IG+H IA+
Sbjct: 146 TAGI--GIAEHPVSDAGAKVGDAVLVSG-----------TIGDHGIAL 180
>3vti_C Hydrogenase maturation factor; transferase, carbamoyltransfer,
maturation of [NIFE]-hydroge nitrIle synthesis, iron;
2.56A {Thermoanaerobacter tengcongensis}
Length = 314
Score = 29.1 bits (66), Expect = 3.3
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 12/48 (25%)
Query: 194 VTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH-IAI 240
+GI + + +PGD+++++G IG+H +A+
Sbjct: 124 TSGIGVLYEGANVSIKNAKPGDIVLISG-----------TIGDHGMAV 160
>3e0e_A Replication protein A; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 1.60A {Methanococcus maripaludis} PDB:
2k5v_A
Length = 97
Score = 27.6 bits (61), Expect = 3.4
Identities = 8/40 (20%), Positives = 17/40 (42%)
Query: 205 DKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKL 244
+ ++ GD+ V+G G + +++ IE L
Sbjct: 58 ELADFEVKKGDIAEVSGYVKQGYSGLEISVDNIGIIEKSL 97
>3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG;
HET: MES; 2.25A {Pseudomonas aeruginosa}
Length = 266
Score = 28.4 bits (64), Expect = 4.4
Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 2/32 (6%)
Query: 25 VLG-GLLLDNTAWDKIADCLNSDY-FYRYDHR 54
L + WD L + RYD R
Sbjct: 31 ALSNSIGTTLHMWDAQLPALTRHFRVLRYDAR 62
>1a78_A Galectin-1; S-lectin, carbohydrate binding, complex
(lectin/saccharide); HET: TDG; 2.00A {Bufo arenarum}
SCOP: b.29.1.3 PDB: 1gan_A*
Length = 134
Score = 27.6 bits (61), Expect = 4.4
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 207 ITSGLQPGDLIIVAGRPSMGKTAFSLNIG 235
L+PG + + G F++N+G
Sbjct: 8 TNLNLKPGHCVEIKGSIPPDCKGFAVNLG 36
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic
protein, MEM protein; 3.50A {Aggregatibacter
actinomycetemcomitans} PDB: 4dk1_A
Length = 369
Score = 28.6 bits (64), Expect = 5.0
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 195 TGISTGFF-ELDKITSGLQPGDLIIVAG 221
G+ F E + SGL G+ ++++
Sbjct: 329 IGVQNDFQTE---VKSGLTEGEKVVISQ 353
>2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol
metabolism; 1.90A {Burkholderia xenovorans}
Length = 266
Score = 28.4 bits (64), Expect = 5.2
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 25 VLG-GLLLDNTAWDKIADCLNSDY-FYRYDHR 54
VL L D + W L+ + RYD R
Sbjct: 30 VLSNSLGTDLSMWAPQVAALSKHFRVLRYDTR 61
>3dui_A Beta-galactoside-binding lectin; carbohydrate-binding proteins,
galactosides, galectin, acetylation, sugar binding
protein; 2.10A {Gallus gallus}
Length = 135
Score = 27.6 bits (61), Expect = 5.3
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 210 GLQPGDLIIVAGRPSMGKTAFSLNIGE 236
GL+PG + V G + +F +N+G+
Sbjct: 12 GLKPGQRLTVKGIIAPNAKSFVMNLGK 38
>1w6n_A Galectin-1; carbohydrate-binding proteins, galactosides; 1.65A
{Homo sapiens} SCOP: b.29.1.3 PDB: 1w6m_A 1w6o_A*
1w6p_A* 3t2t_A* 1gzw_A* 2km2_A 3oy8_A* 3oyw_A* 1w6q_A
2zkn_A* 3m2m_A* 1slt_A* 1sla_A* 1slb_A* 1slc_A*
Length = 134
Score = 27.6 bits (61), Expect = 5.4
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 210 GLQPGDLIIVAGRPSMGKTAFSLNIGEH 237
L+PG+ + V G + +F LN+G+
Sbjct: 10 NLKPGECLRVRGEVAPDAKSFVLNLGKD 37
>2wsu_A Putative fiber protein; viral protein, carbohydrate recognition
domain, tandem-repea; 1.90A {Porcine adenovirus 4} PDB:
2wsv_A* 2wt0_A* 2wt1_A* 2wt2_A*
Length = 343
Score = 28.2 bits (62), Expect = 5.6
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 206 KITSGLQPGDLIIVAGRPSMGKTAFSLNIG 235
+ G+ G I++ G + F+L++
Sbjct: 37 PLPDGVPTGASIVLEGTLTPSAVFFTLDLV 66
>3zxf_A Galectin-7; sugar binding protein; 1.38A {Homo sapiens} PDB: 1bkz_A
2gal_A* 3gal_A* 4gal_A* 5gal_A* 3zxe_A*
Length = 138
Score = 27.5 bits (61), Expect = 5.8
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 206 KITSGLQPGDLIIVAGRPSMGKTAFSLNI 234
+ G++PG ++ + G + F +N+
Sbjct: 11 SLPEGIRPGTVLRIRGLVPPNASRFHVNL 39
>1qmj_A Beta-galactoside-binding lectin; galectin, sugar binding protein;
2.15A {Gallus gallus} SCOP: b.29.1.3
Length = 132
Score = 27.3 bits (60), Expect = 6.3
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 210 GLQPGDLIIVAGRPSMGKTAFSLNIG 235
+QPG+ + V G+ FS+N+G
Sbjct: 9 DVQPGECVKVKGKILSDAKGFSVNVG 34
>2rb9_A HYPE protein; hydrogenase maturation, dimer, enzyme, X- RAY
crystallography, structural genomics, BSGI; 2.00A
{Escherichia coli O157} PDB: 2i6r_A
Length = 334
Score = 28.0 bits (63), Expect = 6.6
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 12/48 (25%)
Query: 194 VTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEH-IAI 240
G+ + L GD+++V+G +G+H I
Sbjct: 145 TAGMGAIPTNIHWGAQTLTAGDILLVSG-----------TLGDHGATI 181
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly,
membrane fusion protein, drug efflux pump, periplasmic
protein; 2.99A {Escherichia coli}
Length = 341
Score = 28.1 bits (63), Expect = 7.1
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 4/28 (14%)
Query: 195 TGISTGFF-ELDKITSGLQPGDLIIVAG 221
G E I GL+ GD +++
Sbjct: 310 IGARNDTDVE---IVKGLEAGDEVVIGE 334
>3b9c_A HSPC159; beta sandwich, unknown function; 1.90A {Homo sapiens} PDB:
2jj6_A
Length = 144
Score = 27.3 bits (60), Expect = 7.2
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 207 ITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAI 248
I G++PG ++V G + +F++++ + + VAI
Sbjct: 16 IKGGMRPGKKVLVMGIVDLNPESFAISLTCGDSEDPPADVAI 57
>3nv1_A Galectin-9, galectin 9 short isoform variant; sugar binding, sugar
binding protein; 1.50A {Homo sapiens} PDB: 3nv2_A*
3nv3_A* 3nv4_A*
Length = 138
Score = 26.9 bits (59), Expect = 7.9
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 206 KITSGLQPGDLIIVAGRPSMGKTAFSLNI--GEHIAIE 241
I GL P I+++G F +N+ G HIA
Sbjct: 13 TILGGLYPSKSILLSGTVLPSAQRFHINLCSGNHIAFH 50
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.379
Gapped
Lambda K H
0.267 0.0649 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,721,569
Number of extensions: 416392
Number of successful extensions: 1239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1185
Number of HSP's successfully gapped: 92
Length of query: 452
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 355
Effective length of database: 3,993,456
Effective search space: 1417676880
Effective search space used: 1417676880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.7 bits)