RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2891
(452 letters)
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 168 bits (426), Expect = 9e-50
Identities = 43/273 (15%), Positives = 107/273 (39%), Gaps = 10/273 (3%)
Query: 183 KLHNRGTNDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIEN 242
++ +++ V + +G ++ T G + G++I+V MGK+ F
Sbjct: 4 RIREHLSSEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAM 63
Query: 243 KLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQ-LYI 301
V + +E S + A ++G ++ + + + + + + ++ + ++
Sbjct: 64 GKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHL 123
Query: 302 DETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLA 361
++ + + R VII+D++ ++ + S + I + LKG A
Sbjct: 124 YDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFA 183
Query: 362 KEINCPILALSQLNRS---LEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSA 418
K ++ + L + + ++DLR SGA+ Q +D I+ + R++
Sbjct: 184 KSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQ----QGD 239
Query: 419 DKGIAEIIVSKQR-NGPIGNI-RLTFSGQYTKF 449
+ + + K R G G + ++ +
Sbjct: 240 MPNLVLVRILKCRFTGDTGIAGYMEYNKETGWL 272
>d1b79a_ a.81.1.1 (A:) N-terminal domain of DnaB helicase
{Escherichia coli [TaxId: 562]}
Length = 102
Score = 129 bits (325), Expect = 4e-37
Identities = 53/102 (51%), Positives = 71/102 (69%)
Query: 15 PPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVIT 74
PPHSIE+EQSVLGGL+LDN WD +A+ + +D FY HR IF + +L S P D+IT
Sbjct: 1 PPHSIEAEQSVLGGLMLDNERWDDVAERVVADDFYTRPHRHIFTEMARLQESGSPIDLIT 60
Query: 75 VFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRD 116
+ +SL G + +GG +YL L++N PSAANI YA+IVR+
Sbjct: 61 LAESLERQGQLDSVGGFAYLAELSKNTPSAANISAYADIVRE 102
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 113 bits (282), Expect = 4e-29
Identities = 36/263 (13%), Positives = 72/263 (27%), Gaps = 35/263 (13%)
Query: 192 NDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIA---------IEN 242
N + + LD + + G + + GK+ +L + IA
Sbjct: 7 NILEAFAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELP 66
Query: 243 KLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYID 302
PV E + R+ L + + P
Sbjct: 67 TGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADGLLIQP----------------- 109
Query: 303 ETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAK 362
SL I L R ++++D L+ EN + ++++ ++ +A
Sbjct: 110 LIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFH--IEEENASGPMAQVIGRMEAIAA 167
Query: 363 EINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRD------EVYNQN 416
+ C I+ L ++ R S + + ++ E +
Sbjct: 168 DTGCSIVFLHHASKGAAMMGAGDQ-QQASRGSSVLVDNIRWQSYLSSMTSAEAEEWGVDD 226
Query: 417 SADKGIAEIIVSKQRNGPIGNIR 439
+ VSK G R
Sbjct: 227 DQRRFFVRFGVSKANYGAPFADR 249
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 107 bits (267), Expect = 3e-27
Identities = 28/252 (11%), Positives = 69/252 (27%), Gaps = 16/252 (6%)
Query: 190 NDNDVTGISTGFFELDKITSG-LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAI 248
+ V +ST ELD + G L+ + AG GKT ++ L
Sbjct: 9 QRSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDE 68
Query: 249 FSMEMSGIQLA-MRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSL 307
++ + + + G ++ + + ++ Y + L
Sbjct: 69 EAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDG--QTVLDNTFVARAYNSDMQML 126
Query: 308 NVIELRANSRRLSRQCGKIG-VIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINC 366
++ + + + + + + + R ++ L LA NC
Sbjct: 127 FAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNC 186
Query: 367 PILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEII 426
+L +Q++ + + A F+ + +
Sbjct: 187 VVLVTNQVSAKPDAFFGMAEQAIG---GHIVGHAATFRFFVRKGK--------GDKRVAK 235
Query: 427 VSKQRNGPIGNI 438
+ + P
Sbjct: 236 LYDSPHLPDAEA 247
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 103 bits (257), Expect = 6e-26
Identities = 32/247 (12%), Positives = 65/247 (26%), Gaps = 20/247 (8%)
Query: 193 DVTGISTGFFELDKITS-GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251
++ I+TG ELDK+ G++ G + + G GKT + +
Sbjct: 1 EIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKA 60
Query: 252 EMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIE 311
+ R +L R G SD + + + + +
Sbjct: 61 MYIDTEGTFRPE----RLLAVAERYGLSGSDVLDNVAYA---RAFNTDHQTQLLYQASAM 113
Query: 312 LRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILAL 371
+ + L + DY R ++ R L LA E ++
Sbjct: 114 MVESRYALLIVDSATALYRTDYSG----RGELSARQMHLARFLRMLLRLADEFGVAVVIT 169
Query: 372 SQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQR 431
+Q+ ++ I + L++ + +
Sbjct: 170 NQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGR--------GETRICKIYDSP 221
Query: 432 NGPIGNI 438
P
Sbjct: 222 CLPEAEA 228
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 95.1 bits (235), Expect = 5e-23
Identities = 31/252 (12%), Positives = 68/252 (26%), Gaps = 31/252 (12%)
Query: 192 NDVTGISTGFFELDKITS-GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFS 250
+ + T D I+ GL G +V+G GKT FS+ + IE P +
Sbjct: 3 QAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT 62
Query: 251 MEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVI 310
E + + G + I + + ++
Sbjct: 63 FEETPQDIIKNA-----------RSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLS 111
Query: 311 ELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILA 370
L ++ + + ID + + + + +E+ +
Sbjct: 112 ALIERINYAIQKY-RARRVSIDSVTSVFQQYDASSV-------------VRRELFRLVAR 157
Query: 371 LSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQ 430
L Q+ + + + G E +D ++ + + + + K
Sbjct: 158 LKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLEGERR-----RRTLEILKL 212
Query: 431 RNGPIGNIRLTF 442
R F
Sbjct: 213 RGTSHMKGEYPF 224
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 71.1 bits (173), Expect = 1e-14
Identities = 39/251 (15%), Positives = 65/251 (25%), Gaps = 40/251 (15%)
Query: 193 DVTGISTGFFELDKITS-GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251
+S+G LD++ G +I+ G GKT E+ A NK +F+
Sbjct: 4 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVEN-ACANKERAILFAY 62
Query: 252 EMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIE 311
E S QL D ++ KI S + +
Sbjct: 63 EESRAQLLRNAY--------------SWGMDFEEMERQNLLKI-----VCAYPESAGLED 103
Query: 312 LRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILAL 371
+ + I L S + + G AK+ L
Sbjct: 104 HLQIIKSEINDFKPARIAIDSLSALARGVS-----NNAFRQFVIGVTGYAKQEEITGLFT 158
Query: 372 SQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQR 431
+ ++ + I D I+ + E+ + I V K R
Sbjct: 159 NTSDQFMGAH---------SITDSHISTITDTIILLQYVEIRGEM-----SRAINVFKMR 204
Query: 432 NGPIGNIRLTF 442
F
Sbjct: 205 GSWHDKAIREF 215
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 64.0 bits (154), Expect = 4e-12
Identities = 29/220 (13%), Positives = 69/220 (31%), Gaps = 12/220 (5%)
Query: 193 DVTGISTGFFELDKITSG-LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251
++ ++TG LD + G ++ G + + G GK+ +A+ ++P+ I
Sbjct: 12 ELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCH----TLAVTCQIPLDIGGG 67
Query: 252 EMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIE 311
E + + +L R G D + + QL + +
Sbjct: 68 EGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDA------- 120
Query: 312 LRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILAL 371
+ ++ Y S R +++ R L+ LA + ++
Sbjct: 121 AAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVT 180
Query: 372 SQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDE 411
+Q+ ++ P + + L + +
Sbjct: 181 NQVVAQVDGGMAFNPDPKKPTGGNIMAHSSTTRLGFKKGK 220
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 60.9 bits (146), Expect = 4e-11
Identities = 26/220 (11%), Positives = 65/220 (29%), Gaps = 10/220 (4%)
Query: 193 DVTGISTGFFELDKITS-GLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251
V I+TG E DK+ G++ + G GKT S + + +
Sbjct: 15 MVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKI 74
Query: 252 EMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIE 311
+ R +L R + + ++ Q+ + + + E
Sbjct: 75 IFIDTENTFRPD----RLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHE 130
Query: 312 LRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILAL 371
+ I I+ + S R +++++ L+ +++E N +
Sbjct: 131 -----EAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVT 185
Query: 372 SQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDE 411
+Q+ + + + + + +
Sbjct: 186 NQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRKGR 225
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 56.2 bits (134), Expect = 2e-09
Identities = 41/249 (16%), Positives = 90/249 (36%), Gaps = 22/249 (8%)
Query: 193 DVTGISTGFFELDKITSG-LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251
+ ISTG LDK+ G ++ + V G GKT + +A+ +LP
Sbjct: 14 TIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAH----TLAVMVQLP-----P 64
Query: 252 EMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIE 311
E G+ ++ + + ++R + ++ +K I ++ + L V +
Sbjct: 65 EEGGLNGSVIWIDTENTFRPERIREIAQNRG--LDPDEVLKHIYVARAFNSNHQMLLVQQ 122
Query: 312 LRANSRRLSRQCGKIGVIIIDYLQLM--SANSRGENRATEISEISRNLKGLAKEINCPIL 369
+ L + ++I+D L S A +++++L L + N +
Sbjct: 123 AEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDI 182
Query: 370 ALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSK 429
A+ N+ + + + A + +++ + + K IA +I
Sbjct: 183 AVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGK------GGKRIARLI--D 234
Query: 430 QRNGPIGNI 438
+ P G
Sbjct: 235 APHLPEGEA 243
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain
{Escherichia coli [TaxId: 562]}
Length = 263
Score = 40.7 bits (95), Expect = 2e-04
Identities = 57/291 (19%), Positives = 97/291 (33%), Gaps = 58/291 (19%)
Query: 174 LNRVIKRINKLHNRGT-------NDNDVTGISTGFFELDKITS--GLQPGDLIIVAGRPS 224
L + +I K +G+ DV ISTG LD GL G ++ + G S
Sbjct: 5 LAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 64
Query: 225 MGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDW 284
GKT +L + E K A E + + R LG
Sbjct: 65 SGKTTLTLQVIAAAQREGK-TCAFIDAEHALDPIYARKLG-------------------- 103
Query: 285 PRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGE 344
I + SQ E +L + + A S G + VI++D + ++ + E
Sbjct: 104 ----VDIDNLLCSQPDTGEQ-ALEICDALARS-------GAVDVIVVDSVAALTPKAEIE 151
Query: 345 N---------RATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESG 395
A +S+ R L G K+ N ++ ++Q+ + +
Sbjct: 152 GEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTG---GN 208
Query: 396 AIEQDADVILFIYRDEVYNQNSADKGI-AEIIVSKQRNGP---IGNIRLTF 442
A++ A V L I R + G + V K + ++ +
Sbjct: 209 ALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILY 259
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 30.8 bits (69), Expect = 0.16
Identities = 5/43 (11%), Positives = 17/43 (39%)
Query: 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM 253
+ ++ + G GKT + + + I + + +++
Sbjct: 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVE 72
>d2nn8a1 b.29.1.3 (A:114-250) Galectin-3 CRD {Human (Homo sapiens)
[TaxId: 9606]}
Length = 137
Score = 30.2 bits (68), Expect = 0.19
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 207 ITSGLQPGDLIIVAGRPSMGKTAFSLNI--GEHIAI 240
+ G+ P LI + G +L+ G +A
Sbjct: 9 LPGGVVPRMLITILGTVKPNANRIALDFQRGNDVAF 44
>d1w6na_ b.29.1.3 (A:) Galectin-1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 134
Score = 28.7 bits (64), Expect = 0.61
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 210 GLQPGDLIIVAGRPSMGKTAFSLNIGE 236
L+PG+ + V G + +F LN+G+
Sbjct: 10 NLKPGECLRVRGEVAPDAKSFVLNLGK 36
>d1a78a_ b.29.1.3 (A:) Galectin-1 {Toad (Bufo arenarum) [TaxId:
38577]}
Length = 134
Score = 28.7 bits (64), Expect = 0.66
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 210 GLQPGDLIIVAGRPSMGKTAFSLNIG 235
L+PG + + G F++N+G
Sbjct: 11 NLKPGHCVEIKGSIPPDCKGFAVNLG 36
>d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 571
Score = 29.7 bits (65), Expect = 0.72
Identities = 8/48 (16%), Positives = 17/48 (35%)
Query: 36 WDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITVFDSLSNTG 83
+A+ S ++Y + HR + + H ++ F N
Sbjct: 446 AQALAERGASVHYYYFTHRTSTSLWGEWMGVLHGDEIEYFFGQPLNNS 493
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain
{Deinococcus radiodurans [TaxId: 1299]}
Length = 268
Score = 29.1 bits (65), Expect = 0.99
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 171 QPLLNRVIKRINKLHNRGT-------NDNDVTGISTGFFELDKITS--GLQPGDLIIVAG 221
+ + +I K +G+ + DV +STG LD G+ G + + G
Sbjct: 5 SKAIETAMSQIEKAFGKGSIMKLGAESKLDVQVVSTGSLSLDLALGVGGIPRGRITEIYG 64
Query: 222 RPSMGKTAFSLNI 234
S GKT +L I
Sbjct: 65 PESGGKTTLALAI 77
>d2z1ea2 d.139.1.1 (A:156-334) Hydrogenase expression/formation
protein HypE {Thermococcus kodakaraensis [TaxId:
311400]}
Length = 179
Score = 28.7 bits (63), Expect = 1.0
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 209 SGLQPGDLIIVAGRPSMGKTAFSLN 233
+G + GD ++V+G A +
Sbjct: 4 AGAKVGDAVLVSGTIGDHGIALMSH 28
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 28.6 bits (62), Expect = 1.1
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
Query: 205 DKITSGLQPGDLIIVAGRPSMGKTAFSLN--IGEHIAIENKLPVAIFSMEMSGIQLAMRM 262
+K SG + + G+P++GK+ LN +G +A + P + R
Sbjct: 1 EKTYSGF-----VAIVGKPNVGKSTL-LNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQ 54
Query: 263 L 263
+
Sbjct: 55 I 55
>d2gala_ b.29.1.3 (A:) Galectin-7 {Human (Homo sapiens) [TaxId:
9606]}
Length = 133
Score = 28.0 bits (62), Expect = 1.4
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 206 KITSGLQPGDLIIVAGRPSMGKTAFSLNI 234
+ G++PG ++ + G + F +N+
Sbjct: 6 SLPEGIRPGTVLRIRGLVPPNASRFHVNL 34
>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 273
Score = 28.2 bits (62), Expect = 1.9
Identities = 12/68 (17%), Positives = 26/68 (38%)
Query: 326 IGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKR 385
GV + + G N + + +I + + L + +CP + + + + R
Sbjct: 200 FGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDR 259
Query: 386 PIMSDLRE 393
P LR+
Sbjct: 260 PTFVALRD 267
>d2zoda2 d.139.1.1 (A:155-336) Selenide, water dikinase SelD
{Aquifex aeolicus [TaxId: 63363]}
Length = 182
Score = 27.3 bits (59), Expect = 3.2
Identities = 26/166 (15%), Positives = 49/166 (29%), Gaps = 8/166 (4%)
Query: 209 SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGK 268
SG Q G L+I+ +G + E I E + AI +M + ML
Sbjct: 4 SGAQVGQLLILTK--PIGTGILIKGLKEGILKEEDINEAIENMLALNDKARNLMLSLDAT 61
Query: 269 LDQHKLRTGRLSSD-DWPRINDSIKKINKSQLYIDETP-----SLNVIELRANSRRLSRQ 322
G L + + ++ +I ++ + + + +
Sbjct: 62 ACTDVTGFGLLGHAWNICKNSNIGARIFFEKVPYYQLSENLVKKKIYPKGAIENLNFVKN 121
Query: 323 CGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPI 368
K + + L + G T E + AKE+
Sbjct: 122 YLKSNLDNWKLILLSDPVTSGGLLFTINKEKLEKIDETAKELEVNY 167
>d1vk3a3 d.139.1.1 (A:167-345) Phosphoribosylformylglycinamidine
synthase II, domains 2 and 4 {Thermotoga maritima
[TaxId: 2336]}
Length = 179
Score = 26.7 bits (58), Expect = 4.1
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 212 QPGDLIIVAGRPSM-----GKTAFSLNIGEHIAIENKLPVAIFSMEM 253
+PG +I++ G + G + S ++ A + + V E
Sbjct: 4 RPGQVIVIFGGATGRDGIHGASFASEDLTGDKATKLSIQVGDPFAEK 50
>d3c9ua2 d.139.1.1 (A:138-300) Thiamine monophosphate kinase (ThiL)
C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Length = 163
Score = 26.8 bits (58), Expect = 4.2
Identities = 22/152 (14%), Positives = 46/152 (30%), Gaps = 7/152 (4%)
Query: 209 SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGK 268
G + GD + V+G + L + E E I ++
Sbjct: 6 DGARLGDSVFVSGTLGDSRAGLELLLMEKEEYEPFELALIQRHLRPTARIDYVKHIQKYA 65
Query: 269 LDQHKLRTG-RLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIG 327
+ G ++ + + +I +L + + + N + G+
Sbjct: 66 NASMDISDGLVADANHLAQRSGVKIEILSEKLPLSNELKMYCEKYGKNPIEYALFGGE-- 123
Query: 328 VIIIDYLQLMSANSRGENRATEISEISRNLKG 359
DY L + N +++EI R +G
Sbjct: 124 ----DYQLLFTHPKERWNPFLDMTEIGRVEEG 151
>d1qmja_ b.29.1.3 (A:) Galectin-1 {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 132
Score = 26.4 bits (58), Expect = 4.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 210 GLQPGDLIIVAGRPSMGKTAFSLNIG 235
+QPG+ + V G+ FS+N+G
Sbjct: 9 DVQPGECVKVKGKILSDAKGFSVNVG 34
>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 325
Score = 26.7 bits (58), Expect = 5.5
Identities = 8/68 (11%), Positives = 19/68 (27%)
Query: 326 IGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKR 385
G+++ + L G ++ +N + + + KR
Sbjct: 252 YGILLWEIFSLGVNPYPGIPVDANFYKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKR 311
Query: 386 PIMSDLRE 393
P +L
Sbjct: 312 PSFPNLTS 319
>d1y7pa1 c.23.1.7 (A:79-217) Hypothetical protein AF1403, C-terminal
domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 139
Score = 25.9 bits (57), Expect = 5.9
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 255 GIQLAMRMLGSVGKLDQHKLRTGRLSSDDWP 285
G ++ +G++ + D+H LR R+S D P
Sbjct: 16 GALVSQVAIGAISEADRHNLRGERISVDTMP 46
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 26.2 bits (56), Expect = 6.1
Identities = 22/166 (13%), Positives = 54/166 (32%), Gaps = 7/166 (4%)
Query: 217 IIVAGRPSMGKTAFSLN--IGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKL 274
II AGR ++GK+ + G+ + + V +E+ + + G +
Sbjct: 3 IIFAGRSNVGKSTL-IYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPK 61
Query: 275 RTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVII---- 330
D+ + K + + + + I R R + +
Sbjct: 62 EVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD 121
Query: 331 IDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNR 376
I + ++ + +N I+ ++ + EI+ + +S
Sbjct: 122 IPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFG 167
>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor
receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}
Length = 299
Score = 26.8 bits (58), Expect = 6.4
Identities = 10/72 (13%), Positives = 21/72 (29%)
Query: 322 QCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQR 381
GV++ + L ++ G E + + +
Sbjct: 218 DVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGE 277
Query: 382 QNKRPIMSDLRE 393
++RP S+L E
Sbjct: 278 PSQRPTFSELVE 289
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 26.2 bits (56), Expect = 7.6
Identities = 27/160 (16%), Positives = 52/160 (32%), Gaps = 13/160 (8%)
Query: 217 IIVAGRPSMGKTAFSLN--IGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKL 274
I + GRP++GK+ LN +G+ I+I ++ + V H
Sbjct: 8 IAIVGRPNVGKSTL-LNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHME 66
Query: 275 RTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIID-- 332
++ + SI + ++ T E+ N R + + V +D
Sbjct: 67 EKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNV 126
Query: 333 ----YLQLMSANSRGENRATEISEIS----RNLKGLAKEI 364
L + +I IS N+ +A +
Sbjct: 127 QEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIV 166
>d1hlca_ b.29.1.3 (A:) S-lac lectin, L-14-II {Human (Homo sapiens)
[TaxId: 9606]}
Length = 129
Score = 25.6 bits (56), Expect = 7.8
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 210 GLQPGDLIIVAGRPSMGKTAFSLNIG 235
++PG + + G + G F +N+G
Sbjct: 8 DMKPGSTLKITGSIADGTDGFVINLG 33
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus
[TaxId: 274]}
Length = 1504
Score = 26.3 bits (57), Expect = 9.5
Identities = 17/130 (13%), Positives = 41/130 (31%), Gaps = 18/130 (13%)
Query: 105 ANIRRYAEIVRDRGILRKLITVTDEI-------SSQAFISRGKEVK--QILDEAESKIFS 155
+ I I L + ++ + G V+ Q L +
Sbjct: 1274 SEIDGVVRIEETEEKLSVFVESEGFSKEYKLPKEARLLVKDGDYVEAGQPLTRG-----A 1328
Query: 156 IAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTNDNDVTGISTGFFELDKIT----SGL 211
I ++ KG + ++ L I+++ + +D + + + ++T S L
Sbjct: 1329 IDPHQLLEAKGPEAVERYLVEEIQKVYRAQGVKLHDKHIEIVVRQMMKYVEVTDPGDSRL 1388
Query: 212 QPGDLIIVAG 221
G ++
Sbjct: 1389 LEGQVLEKWD 1398
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.379
Gapped
Lambda K H
0.267 0.0444 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,608,154
Number of extensions: 76460
Number of successful extensions: 350
Number of sequences better than 10.0: 1
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 44
Length of query: 452
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 364
Effective length of database: 1,199,356
Effective search space: 436565584
Effective search space used: 436565584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.3 bits)