BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2892
(452 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VYE|A Chain A, Crystal Structure Of The Dnac-Ssdna Complex
pdb|2VYE|B Chain B, Crystal Structure Of The Dnac-Ssdna Complex
pdb|2VYF|A Chain A, Crystal Structure Of The Dnac
pdb|2VYF|B Chain B, Crystal Structure Of The Dnac
Length = 454
Score = 418 bits (1075), Expect = e-117, Method: Compositional matrix adjust.
Identities = 209/441 (47%), Positives = 312/441 (70%), Gaps = 8/441 (1%)
Query: 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADV 72
R+PP SIE+EQ+VLG + LD TA ++ L + FYR H+ IF ++++ + P D+
Sbjct: 8 RIPPQSIEAEQAVLGAVFLDPTALTLASERLIPEDFYRAAHQKIFHAMLRVADKGEPVDL 67
Query: 73 ITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISS 132
+TV L+ EE+GG+SYL+ LA ++P+AAN+ YA IV ++ +LR+LI I+
Sbjct: 68 VTVTAELAALEQLEEVGGVSYLSELADSVPTAANVEYYARIVEEKSLLRRLIRTATSIAQ 127
Query: 133 QAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTNDN 192
+ +R E+ +LDEAE KI +++++ + F+ I+ +L + I LHNR +
Sbjct: 128 DGY-TREDEIDVLLDEAERKIMEVSQRKH--SGAFKNIKDVLVQTYDNIEMLHNR---NG 181
Query: 193 DVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252
D+TGI TGF ELD++TSG Q DLIIVA RPS+GKTAF+LNI +++A + VAIFS+E
Sbjct: 182 DITGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241
Query: 253 MSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIEL 312
MS QL MRML + G ++ LRTG+L+ +DW ++ ++ ++ + +YID+TPS+ V ++
Sbjct: 242 MSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDI 301
Query: 313 RANSRRLSRQCGKIGVIIIDYLQLMSANSRG-ENRATEISEISRNLKGLAKEINCPILAL 371
RA RRL ++ G +G+++IDYLQL+ + R ENR E+SEISR+LK LA+E+ P++AL
Sbjct: 302 RAKCRRLKQESG-LGMVVIDYLQLIQGSGRNRENRQQEVSEISRSLKALARELEVPVIAL 360
Query: 372 SQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQR 431
SQL+RS+EQRQ+KRP+MSDLRESG+IEQDAD++ F+YRD+ YN++S +K I EII++KQR
Sbjct: 361 SQLSRSVEQRQDKRPMMSDLRESGSIEQDADIVAFLYRDDYYNKDSENKNIIEIIIAKQR 420
Query: 432 NGPIGNIRLTFSGQYTKFNNF 452
NGP+G ++L F +Y KF N
Sbjct: 421 NGPVGTVQLAFIKEYNKFVNL 441
>pdb|2R6A|A Chain A, Crystal Form Bh1
pdb|2R6A|B Chain B, Crystal Form Bh1
pdb|2R6E|A Chain A, Crystal Form B2
pdb|2R6E|B Chain B, Crystal Form B2
pdb|2R6C|A Chain A, Crystal Form Bh2
pdb|2R6C|B Chain B, Crystal Form Bh2
pdb|2R6C|C Chain C, Crystal Form Bh2
pdb|2R6C|D Chain D, Crystal Form Bh2
pdb|2R6C|E Chain E, Crystal Form Bh2
pdb|2R6C|F Chain F, Crystal Form Bh2
pdb|2R6D|A Chain A, Crystal Form B1
pdb|2R6D|B Chain B, Crystal Form B1
pdb|2R6D|C Chain C, Crystal Form B1
pdb|2R6D|D Chain D, Crystal Form B1
pdb|2R6D|E Chain E, Crystal Form B1
pdb|2R6D|F Chain F, Crystal Form B1
pdb|4ESV|A Chain A, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|B Chain B, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|C Chain C, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|D Chain D, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|E Chain E, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|F Chain F, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|G Chain G, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|H Chain H, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|I Chain I, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|J Chain J, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|K Chain K, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|L Chain L, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
Length = 454
Score = 416 bits (1070), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/441 (47%), Positives = 311/441 (70%), Gaps = 8/441 (1%)
Query: 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADV 72
R+PP SIE+EQ+VLG + LD A ++ L + FYR H+ IF ++++ + P D+
Sbjct: 8 RIPPQSIEAEQAVLGAVFLDPAALVPASEILIPEDFYRAAHQKIFHAMLRVADRGEPVDL 67
Query: 73 ITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISS 132
+TV L+ + EEIGG+SYL+ LA +P+AAN+ YA IV ++ +LR+LI I+
Sbjct: 68 VTVTAELAASEQLEEIGGVSYLSELADAVPTAANVEYYARIVEEKSVLRRLIRTATSIAQ 127
Query: 133 QAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTNDN 192
+ +R E+ +LDEA+ KI +++++ + F+ I+ +L + I LHNR D
Sbjct: 128 DGY-TREDEIDVLLDEADRKIMEVSQRKH--SGAFKNIKDILVQTYDNIEMLHNR---DG 181
Query: 193 DVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252
++TGI TGF ELD++TSG Q DLIIVA RPS+GKTAF+LNI +++A + VAIFS+E
Sbjct: 182 EITGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241
Query: 253 MSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIEL 312
MS QL MRML + G ++ LRTG+L+ +DW ++ ++ ++ + +YID+TPS+ V ++
Sbjct: 242 MSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDI 301
Query: 313 RANSRRLSRQCGKIGVIIIDYLQLMSANSRG-ENRATEISEISRNLKGLAKEINCPILAL 371
RA RRL ++ G +G+I+IDYLQL+ + R ENR E+SEISR+LK LA+E+ P++AL
Sbjct: 302 RAKCRRLKQESG-LGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIAL 360
Query: 372 SQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQR 431
SQL+RS+EQRQ+KRP+MSD+RESG+IEQDAD++ F+YRD+ YN++S +K I EII++KQR
Sbjct: 361 SQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYYNKDSENKNIIEIIIAKQR 420
Query: 432 NGPIGNIRLTFSGQYTKFNNF 452
NGP+G ++L F +Y KF N
Sbjct: 421 NGPVGTVQLAFIKEYNKFVNL 441
>pdb|2Q6T|A Chain A, Crystal Structure Of The Thermus Aquaticus Dnab Monomer
pdb|2Q6T|B Chain B, Crystal Structure Of The Thermus Aquaticus Dnab Monomer
pdb|2Q6T|C Chain C, Crystal Structure Of The Thermus Aquaticus Dnab Monomer
pdb|2Q6T|D Chain D, Crystal Structure Of The Thermus Aquaticus Dnab Monomer
Length = 444
Score = 382 bits (980), Expect = e-106, Method: Compositional matrix adjust.
Identities = 195/443 (44%), Positives = 286/443 (64%), Gaps = 11/443 (2%)
Query: 14 VPPHSIESEQSVLGGLLLDNTAWDKIADCLNS-DYFYRYDHRLIFKHIIKLINSSHPADV 72
+PPHS+E+EQSVLG +LLD+ D++ L S + FY HR I+ + L + P D+
Sbjct: 5 IPPHSLEAEQSVLGSILLDSDVMDEVEGLLPSPEAFYAEAHRKIYAAMQALRSQGRPVDL 64
Query: 73 ITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISS 132
+T+ + LS G EE+GG +YL L++ P+AA YA IV ++ LR+LI E
Sbjct: 65 VTLSEELSRRGQLEEVGGTAYLLQLSEATPTAAYAEHYARIVAEKWTLRRLIQAAGEAMR 124
Query: 133 QAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTNDN 192
A+ G + +ILD A KI E+ + K + +P+ V + + N
Sbjct: 125 LAYEEAGS-LDEILDTAGKKIL-----EVALTKTDTEARPMRELVHETFEHIEALFQNKG 178
Query: 193 DVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252
+V G+ TGF ELD++ L PG L I+A RP+MGKTAF+L I ++ A++ + V I+S+E
Sbjct: 179 EVAGVRTGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238
Query: 253 MSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIEL 312
M QL +RM+ S ++D +++R G+L+ D+ R+ D +++++ +YID+TP L ++E+
Sbjct: 239 MPAAQLTLRMMCSEARIDMNRVRLGQLTDRDFSRLVDVASRLSEAPIYIDDTPDLTLMEV 298
Query: 313 RANSRRLSRQCGKIGVIIIDYLQLMS---ANSRGENRATEISEISRNLKGLAKEINCPIL 369
RA +RRL Q ++G+IIIDYLQLMS + GENR EI+ ISR LK LA+E+ PI+
Sbjct: 299 RARARRLVSQ-NQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPII 357
Query: 370 ALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSK 429
ALSQL+R++E R NKRP++SDLRESG+IEQDAD+++FIYRDE YN +S GIAEIIV K
Sbjct: 358 ALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYRDEYYNPHSEKAGIAEIIVGK 417
Query: 430 QRNGPIGNIRLTFSGQYTKFNNF 452
QRNGP G + L F + +FN+
Sbjct: 418 QRNGPTGTVELQFHASHVRFNDL 440
>pdb|3BGW|A Chain A, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
pdb|3BGW|B Chain B, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
pdb|3BGW|C Chain C, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
pdb|3BGW|D Chain D, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
pdb|3BGW|E Chain E, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
pdb|3BGW|F Chain F, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
Length = 444
Score = 233 bits (594), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 144/436 (33%), Positives = 249/436 (57%), Gaps = 19/436 (4%)
Query: 21 SEQSVLGGLLLDNTAWDKIADC-LNSDYFYRYDHRLIFKHIIKLINSSHPADVITVFDSL 79
+EQ+VLG +L T + I +C L ++F H I+ + L D ++ +
Sbjct: 17 AEQAVLGSIL---TEPELIKECPLTPEHFSPGKHFNIYFTMQDLDRKGQSVDFTSIAARV 73
Query: 80 SNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQAFISRG 139
++GG YL LA ++ S +++ + V + RK I++ +I S
Sbjct: 74 GE--KLPQLGGFGYLTELAASVASTTTFKQHCQTVSEYFQKRKAISIAQQIIENVNESDD 131
Query: 140 KEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTNDNDVTGIST 199
VK I EA S++ I + G I L V + I + D ++TG+ +
Sbjct: 132 GPVKPI-QEAVSELMEIEASGTDDDDG--SIDEALVTVYEEIE------SADGNITGVPS 182
Query: 200 GFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLA 259
GF ELD++T G + + +++A RPSMGKTAF+L ++++ +N V + S+EM +
Sbjct: 183 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS-DNDDVVNLHSLEMGKKENI 241
Query: 260 MRMLGSVGKLDQHKLRTGR--LSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSR 317
R++ + G ++ K++ R +S+DW +++ +I +I+ S + I + +V + + +R
Sbjct: 242 KRLIVTAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTR 301
Query: 318 RLSRQ-CGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNR 376
+ R+ GK +++IDYLQL+ ++R +IS+ISR+LK +A+E++ ++ALSQL+R
Sbjct: 302 QTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLSR 361
Query: 377 SLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQRNGPIG 436
+EQRQ+KRP++SDLRESG +EQDAD+I F+YRD+ Y++ S K I E+I++K R+GP+G
Sbjct: 362 QVEQRQDKRPMLSDLRESGQLEQDADIIEFLYRDDYYDKESESKNIVEVIIAKHRDGPVG 421
Query: 437 NIRLTFSGQYTKFNNF 452
+ L F +Y F N
Sbjct: 422 TVSLAFIKEYGNFVNL 437
>pdb|4A1F|A Chain A, Crystal Structure Of C-Terminal Domain Of Helicobacter
Pylori Dnab Helicase
pdb|4A1F|B Chain B, Crystal Structure Of C-Terminal Domain Of Helicobacter
Pylori Dnab Helicase
Length = 338
Score = 218 bits (554), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 113/294 (38%), Positives = 168/294 (57%), Gaps = 35/294 (11%)
Query: 193 DVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252
+VTGI TGF +LD TSG G L+I+ RPSMGKT+ +N+ A+ + VA+FS+E
Sbjct: 25 EVTGIPTGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLS-ALNDDRGVAVFSLE 83
Query: 253 MSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIEL 312
MS QLA+R L + ++ H L +GRL D W + +++ +L+ + + + ++
Sbjct: 84 MSAEQLALRALSDLTSINMHDLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQI 143
Query: 313 RANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALS 372
R R+L Q ++G+ IDYLQLMS + + R +I+EISR LK LA+E+ PI+AL
Sbjct: 144 RLQLRKLKSQHKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLARELEIPIIALV 203
Query: 373 QLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGI---------- 422
QLNRSLE R +KRPI+SD+++SG IEQDAD++LF+YR +Y + D I
Sbjct: 204 QLNRSLENRDDKRPILSDIKDSGGIEQDADIVLFLYRGYIYQMRAEDNKIDKLKKEGKIE 263
Query: 423 ------------------------AEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452
AEIIV+K RNG G + F+ +T++ +
Sbjct: 264 EAQELYLKVNEERRIHKQNGSIEEAEIIVAKNRNGATGTVYTRFNAPFTRYEDM 317
>pdb|3BH0|A Chain A, Atpase Domain Of G40p
Length = 315
Score = 211 bits (538), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 104/265 (39%), Positives = 180/265 (67%), Gaps = 4/265 (1%)
Query: 191 DNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFS 250
D ++TG+ +GF ELD++T G + + +++A RPSMGKTAF+L ++++ +N V + S
Sbjct: 45 DGNITGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS-DNDDVVNLHS 103
Query: 251 MEMSGIQLAMRMLGSVGKLDQHKLRTGR--LSSDDWPRINDSIKKINKSQLYIDETPSLN 308
+EM + R++ + G ++ K++ R +S+DW +++ +I +I+ S + I + +
Sbjct: 104 LEMGKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQS 163
Query: 309 VIELRANSRRLSRQ-CGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCP 367
V + + +R+ R+ GK +++IDYLQL+ ++R +IS+ISR+LK +A+E++
Sbjct: 164 VNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVV 223
Query: 368 ILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIV 427
++ALSQL+R +EQRQ+KRP++SDLRESG +EQDAD+I F+YRD+ Y++ S K I E+I+
Sbjct: 224 VIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYRDDYYDKESESKNIVEVII 283
Query: 428 SKQRNGPIGNIRLTFSGQYTKFNNF 452
+K R+GP+G + L F +Y F N
Sbjct: 284 AKHRDGPVGTVSLAFIKEYGNFVNL 308
>pdb|1JWE|A Chain A, Nmr Structure Of The N-Terminal Domain Of E. Coli Dnab
Helicase
Length = 114
Score = 123 bits (309), Expect = 2e-28, Method: Composition-based stats.
Identities = 57/113 (50%), Positives = 81/113 (71%)
Query: 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADV 72
+VPPHSIE+EQSVLGGL+LDN WD +A+ + +D FY HR IF + +L S P D+
Sbjct: 2 KVPPHSIEAEQSVLGGLMLDNERWDDVAERVVADDFYTRPHRHIFTEMARLQESGSPIDL 61
Query: 73 ITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLIT 125
IT+ +SL G + +GG +YL L++N PSAANI YA+IVR+R ++R++I+
Sbjct: 62 ITLAESLERQGQLDSVGGFAYLAELSKNTPSAANISAYADIVRERAVVREMIS 114
>pdb|1B79|A Chain A, N-Terminal Domain Of Dna Replication Protein Dnab
pdb|1B79|B Chain B, N-Terminal Domain Of Dna Replication Protein Dnab
pdb|1B79|C Chain C, N-Terminal Domain Of Dna Replication Protein Dnab
pdb|1B79|D Chain D, N-Terminal Domain Of Dna Replication Protein Dnab
Length = 119
Score = 117 bits (293), Expect = 1e-26, Method: Composition-based stats.
Identities = 55/106 (51%), Positives = 74/106 (69%)
Query: 12 FRVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPAD 71
+VPPHSIE+EQSVLGGL+LDN WD +A+ + +D FY HR IF + +L S P D
Sbjct: 14 LKVPPHSIEAEQSVLGGLMLDNERWDDVAERVVADDFYTRPHRHIFTEMARLQESGSPID 73
Query: 72 VITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDR 117
+IT+ +SL G + +GG +YL L++N PSAANI YA+IVR+R
Sbjct: 74 LITLAESLERQGQLDSVGGFAYLAELSKNTPSAANISAYADIVRER 119
>pdb|2R5U|A Chain A, Crystal Structure Of The N-Terminal Domain Of Dnab
Helicase From Mycobacterium Tuberculosis
pdb|2R5U|B Chain B, Crystal Structure Of The N-Terminal Domain Of Dnab
Helicase From Mycobacterium Tuberculosis
pdb|2R5U|C Chain C, Crystal Structure Of The N-Terminal Domain Of Dnab
Helicase From Mycobacterium Tuberculosis
pdb|2R5U|D Chain D, Crystal Structure Of The N-Terminal Domain Of Dnab
Helicase From Mycobacterium Tuberculosis
pdb|2R5U|E Chain E, Crystal Structure Of The N-Terminal Domain Of Dnab
Helicase From Mycobacterium Tuberculosis
pdb|2R5U|F Chain F, Crystal Structure Of The N-Terminal Domain Of Dnab
Helicase From Mycobacterium Tuberculosis
Length = 200
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 97/177 (54%), Gaps = 3/177 (1%)
Query: 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADV 72
R PP + +EQSVLGG+LL A + + L FYR H+ ++ I+ L PAD
Sbjct: 25 RQPPQDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYDAILDLYGRGEPADA 84
Query: 73 ITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISS 132
+TV L G IGG YL++L +P+AAN YA IV ++ +LR+L+ +
Sbjct: 85 VTVAAELDRRGLLRRIGGAPYLHTLISTVPTAANAGYYASIVAEKALLRRLVEAGTRVVQ 144
Query: 133 QAFI-SRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRG 188
+ + G +V +++D A+++I+ +A++ +++ F ++ LL + I+ + + G
Sbjct: 145 YGYAGAEGADVAEVVDRAQAEIYDVADRR--LSEDFVALEDLLQPTMDEIDAIASSG 199
>pdb|1Q57|A Chain A, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
pdb|1Q57|B Chain B, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
pdb|1Q57|C Chain C, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
pdb|1Q57|D Chain D, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
pdb|1Q57|E Chain E, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
pdb|1Q57|F Chain F, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
pdb|1Q57|G Chain G, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
Length = 503
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 328 VIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNK--R 385
VII+D++ ++ + S + I + LKG AK ++ + L + + ++ R
Sbjct: 357 VIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGR 416
Query: 386 PI-MSDLRESGAIEQDADVILFIYRDE 411
P+ ++DLR SGA+ Q +D I+ + R++
Sbjct: 417 PVSITDLRGSGALRQLSDTIIALERNQ 443
>pdb|1E0J|A Chain A, Gp4d Helicase From Phage T7 Adpnp Complex
pdb|1E0J|B Chain B, Gp4d Helicase From Phage T7 Adpnp Complex
pdb|1E0J|C Chain C, Gp4d Helicase From Phage T7 Adpnp Complex
pdb|1E0J|D Chain D, Gp4d Helicase From Phage T7 Adpnp Complex
pdb|1E0J|E Chain E, Gp4d Helicase From Phage T7 Adpnp Complex
pdb|1E0J|F Chain F, Gp4d Helicase From Phage T7 Adpnp Complex
pdb|1E0K|A Chain A, Gp4d Helicase From Phage T7
pdb|1E0K|B Chain B, Gp4d Helicase From Phage T7
pdb|1E0K|C Chain C, Gp4d Helicase From Phage T7
pdb|1E0K|D Chain D, Gp4d Helicase From Phage T7
pdb|1E0K|E Chain E, Gp4d Helicase From Phage T7
pdb|1E0K|F Chain F, Gp4d Helicase From Phage T7
Length = 289
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 328 VIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNK--R 385
VII+D++ ++ + S + I + LKG AK ++ + L + + ++ R
Sbjct: 160 VIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGR 219
Query: 386 PI-MSDLRESGAIEQDADVILFIYRDE 411
P+ ++DLR SGA+ Q +D I+ + R++
Sbjct: 220 PVSITDLRGSGALRQLSDTIIALERNQ 246
>pdb|1CR0|A Chain A, Crystal Structure Of The Helicase Domain Of The Gene4
Protein Of Bacteriophage T7
pdb|1CR1|A Chain A, Crystal Structure Of The Helicase Domain Of The Gene 4
Protein Of Bacteriophage T7: Complex With Dttp
pdb|1CR2|A Chain A, Crystal Structure Of The Helicase Domain Of The Gene 4
Protein Of Bacteriophage T7: Complex With Datp
pdb|1CR4|A Chain A, Crystal Structure Of The Helicase Domain Of The Gene 4
Protein Of Bacteriophage T7: Complex With Dtdp
Length = 296
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 328 VIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNK--R 385
VII+D++ ++ + S + I + LKG AK ++ + L + + ++ R
Sbjct: 150 VIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGR 209
Query: 386 PI-MSDLRESGAIEQDADVILFIYRDE 411
P+ ++DLR SGA+ Q +D I+ + R++
Sbjct: 210 PVSITDLRGSGALRQLSDTIIALERNQ 236
>pdb|2W0M|A Chain A, Crystal Structure Of Sso2452 From Sulfolobus Solfataricus
P2
Length = 235
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 194 VTGISTGFFELDKITSGLQP-GDLIIVAGRPSMGKTAFSLNI 234
V+ +STG + DK+ G P G I + G P GKT FSL+
Sbjct: 2 VSRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHF 43
>pdb|1PJA|A Chain A, The Crystal Structure Of Palmitoyl Protein Thioesterase-2
Reveals The Basis For Divergent Substrate Specificities
Of The Two Lysosomal Thioesterases (Ppt1 And Ppt2)
Length = 302
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 51 YDHRLIFKHIIKLINSSHPADVITVFDSLSNTGN----AEEIGGL-SYLNSLAQNIPSAA 105
+D F+H+++ IN +HP V+TV D + E++ G + + P
Sbjct: 46 FDSSYSFRHLLEYINETHPGTVVTVLDLFDGRESLRPLWEQVQGFREAVVPIMAKAPQGV 105
Query: 106 NIRRYAEIVRDRGILRKLITVTDEISSQAFIS 137
++ Y++ + R L++V D+ + +FIS
Sbjct: 106 HLICYSQ---GGLVCRALLSVMDDHNVDSFIS 134
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 204 LDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPV----AIFSMEMS 254
L+ I G G +++AG+P GKTA ++ + + + + IFS+EMS
Sbjct: 60 LEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMS 114
>pdb|1WP1|A Chain A, Crystal Structure Of The Drug-Discharge Outer Membrane
Protein, Oprm
pdb|1WP1|B Chain B, Crystal Structure Of The Drug-Discharge Outer Membrane
Protein, Oprm
Length = 474
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 69/154 (44%), Gaps = 22/154 (14%)
Query: 28 GLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITVFDSLSNTGNA-- 85
GL LD T ++ L SD R L +H + N+S A F S+S T NA
Sbjct: 249 GLGLDQTLLTEVPAGLPSDLLQRRPDILEAEHQLMAANASIGAARAAFFPSISLTANAGT 308
Query: 86 --EEIGGL------SYLNSLAQNIP--SAANIRR---YAEIVRD-------RGILRKLIT 125
++ GL S+L + N+P +A ++R YA+I +D + I
Sbjct: 309 MSRQLSGLFDAGSGSWLFQPSINLPIFTAGSLRASLDYAKIQKDINVAQYEKAIQTAFQE 368
Query: 126 VTDEISSQAFISRGKEVKQILDEAESKIFSIAEK 159
V D ++++ + + ++ L +A + + +A+K
Sbjct: 369 VADGLAARGTFTEQLQAQRDLVKASDEYYQLADK 402
>pdb|3D5K|A Chain A, Crystal Structure Of The Oprm Channel In A Non-Symmetrical
Space Group
pdb|3D5K|B Chain B, Crystal Structure Of The Oprm Channel In A Non-Symmetrical
Space Group
pdb|3D5K|C Chain C, Crystal Structure Of The Oprm Channel In A Non-Symmetrical
Space Group
Length = 474
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 69/154 (44%), Gaps = 22/154 (14%)
Query: 28 GLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITVFDSLSNTGNA-- 85
GL LD T ++ L SD R L +H + N+S A F S+S T NA
Sbjct: 249 GLGLDQTLLTEVPAGLPSDLLQRRPDILEAEHQLMAANASIGAARAAFFPSISLTANAGT 308
Query: 86 --EEIGGL------SYLNSLAQNIP--SAANIRR---YAEIVRD-------RGILRKLIT 125
++ GL S+L + N+P +A ++R YA+I +D + I
Sbjct: 309 MSRQLSGLFDAGSGSWLFQPSINLPIFTAGSLRASLDYAKIQKDINVAQYEKAIQTAFQE 368
Query: 126 VTDEISSQAFISRGKEVKQILDEAESKIFSIAEK 159
V D ++++ + + ++ L +A + + +A+K
Sbjct: 369 VADGLAARGTFTEQLQAQRDLVKASDEYYQLADK 402
>pdb|2VPM|A Chain A, Trypanothione Synthetase
pdb|2VPM|B Chain B, Trypanothione Synthetase
Length = 653
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 39/95 (41%), Gaps = 17/95 (17%)
Query: 273 KLRTGRLSSDDWPRINDSIKKINKSQLYI---------DETPSLNVIELRANSRRLSRQC 323
KLR + + WPRI S K Q YI +ET + E A+S +C
Sbjct: 301 KLRLFAIPEEFWPRIRHSWK---YQQTYISGRFDFAFNNETGEVKCFEYNADSASTLLEC 357
Query: 324 GKIGVIIIDYLQLMSANSRGENRATEISEISRNLK 358
G I + + L ++RG A E RNLK
Sbjct: 358 GLIQQKWAESVGLDKQDTRGSGFAVE-----RNLK 387
>pdb|2VOB|A Chain A, Trypanothione Synthetase
pdb|2VOB|B Chain B, Trypanothione Synthetase
pdb|2VPS|A Chain A, Structure Of The Bifunctional Leishmania Major
Trypanothione Synthetase-Amidase
Length = 652
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 46/115 (40%), Gaps = 19/115 (16%)
Query: 255 GIQLAMRMLGSVGKL--DQHKLRTGRLSSDDWPRINDSIKKINKSQLYI---------DE 303
G QL + + ++ KLR + + WPRI S K Q YI +E
Sbjct: 280 GTQLHAIFMEATAQVIESDEKLRLFAIPEEFWPRIRHSWK---YQQTYISGRFDFAFNNE 336
Query: 304 TPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLK 358
T + E A+S +CG I + + L ++RG A E RNLK
Sbjct: 337 TGEVKCFEYNADSASTLLECGLIQQKWAESVGLDKQDTRGSGFAVE-----RNLK 386
>pdb|3GXV|A Chain A, Three-Dimensional Structure Of N-Terminal Domain Of Dnab
Helicase From Helicobacter Pylori And Its Interactions
With Primase
pdb|3GXV|B Chain B, Three-Dimensional Structure Of N-Terminal Domain Of Dnab
Helicase From Helicobacter Pylori And Its Interactions
With Primase
Length = 123
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Query: 22 EQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITVFDSLSN 81
E+ VL G++L N +++ L FY + L F+ +KL P D + +
Sbjct: 14 ERIVLSGIVLANHKIEEVHSVLEPSDFYYPPNGLFFEIALKLHEEDCPIDENFIRQKMPK 73
Query: 82 TGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQA 134
+E ++ + NI Y E +++ I RKL + + I QA
Sbjct: 74 DKQIKEEDLVAIFAA-----SPIDNIEAYVEEIKNASIKRKLFGLANTIREQA 121
>pdb|3K5Q|A Chain A, Crystal Structure Of Fbf-2FBE COMPLEX
pdb|3K5Y|A Chain A, Crystal Structure Of Fbf-2GLD-1 Fbea Complex
pdb|3K5Z|A Chain A, Crystal Structure Of Fbf-2GLD-1 Fbea G4a Mutant Complex
pdb|3K61|A Chain A, Crystal Structure Of Fbf-2FOG-1 Fbea Complex
pdb|3K62|A Chain A, Crystal Structure Of Fbf-2GLD-1 Fbeb Complex
pdb|3K64|A Chain A, Crystal Structure Of Fbf-2FEM-3 Pme Complex
Length = 412
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 66/148 (44%), Gaps = 24/148 (16%)
Query: 23 QSVLGGLLLDNTAWDKIADCLNSDYFYR------YDHRLIFKHIIKLINSSHPADVITVF 76
Q V+ + L N W+ I D + + R Y R++ I KL S D+ +
Sbjct: 166 QKVVAVIPLKN--WEFIVDFVATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAA 223
Query: 77 DSL----------SNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITV 126
+L S T +E+ Y N + Q+I S ++ Y E + ++ ++R L+++
Sbjct: 224 QNLRERALQRLMTSVTNRCQELATNEYANYIIQHIVSNDDLAVYRECIIEKCLMRNLLSL 283
Query: 127 TDE-----ISSQAFISRGKE-VKQILDE 148
+ E + +AF+ E + +++DE
Sbjct: 284 SQEKFASHVVEKAFLHAPLELLAEMMDE 311
>pdb|3P8B|B Chain B, X-Ray Crystal Structure Of Pyrococcus Furiosus
Transcription Elongation Factor Spt45
pdb|3P8B|D Chain D, X-Ray Crystal Structure Of Pyrococcus Furiosus
Transcription Elongation Factor Spt45
Length = 152
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 185 HNRGTNDNDVTGIST-GFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGE 236
H RG +V F E SGL+PGDL+ V P G+ A + I E
Sbjct: 65 HARGVLPGEVPFKEIEHFLEEKPAVSGLEPGDLVEVIAGPFKGQKAKVVKIDE 117
>pdb|3QG9|A Chain A, Crystal Structure Of Fbf-2GLD-1 Fbea A7u Mutant Complex
pdb|3V6Y|A Chain A, Crystal Structure Of Fbf-2 In Complex With A Mutant Gld-1
Fbea13 Rna
pdb|3V74|A Chain A, Crystal Structure Of Fbf-2 In Complex With Gld-1 Fbea13
Rna
Length = 413
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 66/148 (44%), Gaps = 24/148 (16%)
Query: 23 QSVLGGLLLDNTAWDKIADCLNSDYFYR------YDHRLIFKHIIKLINSSHPADVITVF 76
Q V+ + L N W+ I D + + R Y R++ I KL S D+ +
Sbjct: 167 QKVVAVIPLKN--WEFIVDFVATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAA 224
Query: 77 DSL----------SNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITV 126
+L S T +E+ Y N + Q+I S ++ Y E + ++ ++R L+++
Sbjct: 225 QNLRERALQRLMTSVTNRCQELATNEYANYIIQHIVSNDDLAVYRECIIEKCLMRNLLSL 284
Query: 127 TDE-----ISSQAFISRGKE-VKQILDE 148
+ E + +AF+ E + +++DE
Sbjct: 285 SQEKFASHVVEKAFLHAPLELLAEMMDE 312
>pdb|3QGB|A Chain A, Crystal Structure Of Fbf-2 R288y Mutant In Complex With
Gld-1 Fbea
pdb|3QGC|A Chain A, Crystal Structure Of Fbf-2 R288y Mutant In Complex With
Gld-1 Fbea A7u Mutant
Length = 413
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 66/148 (44%), Gaps = 24/148 (16%)
Query: 23 QSVLGGLLLDNTAWDKIADCLNSDYFYR------YDHRLIFKHIIKLINSSHPADVITVF 76
Q V+ + L N W+ I D + + R Y R++ I KL S D+ +
Sbjct: 167 QKVVAVIPLKN--WEFIVDFVATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAA 224
Query: 77 DSL----------SNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITV 126
+L S T +E+ Y N + Q+I S ++ Y E + ++ ++R L+++
Sbjct: 225 QNLRERALQRLMTSVTNRCQELATNEYANYIIQHIVSNDDLAVYRECIIEKCLMRNLLSL 284
Query: 127 TDE-----ISSQAFISRGKE-VKQILDE 148
+ E + +AF+ E + +++DE
Sbjct: 285 SQEKFASHVVEKAFLHAPLELLAEMMDE 312
>pdb|3QQC|D Chain D, Crystal Structure Of Archaeal Spt45 BOUND TO THE RNAP
CLAMP DOMAIN
Length = 163
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 185 HNRGTNDNDVTGIST-GFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGE 236
H RG +V F E SGL+PGDL+ V P G+ A + I E
Sbjct: 65 HARGVLPGEVPFKEIEHFLEEKPAVSGLEPGDLVEVIAGPFKGQKAKVVKIDE 117
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 204 LDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPV----AIFSMEMS 254
L+ I G G +++AG+P GKTA + + + + IFS+E S
Sbjct: 75 LEXIREGKIAGRAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXS 129
>pdb|3KQ5|A Chain A, Crystal Structure Of An Uncharacterized Protein From
Coxiella Burnetii
Length = 393
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 13/109 (11%)
Query: 77 DSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQAFI 136
+ L + N + G++ LN QN P A + RYA + G+L ++ ++ + FI
Sbjct: 71 EPLCSLMNEGLLRGVNSLNHYIQNHPEATPLERYA--LFSAGLLLEVAHAV--VNQKIFI 126
Query: 137 S--RGKEVKQ-------ILDEAESKIFSIAEKEICINKGFQQIQPLLNR 176
+ G +KQ ++D+ E+K + I + I P+L R
Sbjct: 127 TDEEGNFIKQWNPFSGPLIDDVETKHYKIMPLSSYYQRNIPSITPILVR 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,171,474
Number of Sequences: 62578
Number of extensions: 486425
Number of successful extensions: 1471
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1431
Number of HSP's gapped (non-prelim): 44
length of query: 452
length of database: 14,973,337
effective HSP length: 102
effective length of query: 350
effective length of database: 8,590,381
effective search space: 3006633350
effective search space used: 3006633350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)