BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2892
(452 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8FB22|DNAB_ECOL6 Replicative DNA helicase OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=dnaB PE=3 SV=2
Length = 471
Score = 474 bits (1219), Expect = e-133, Method: Compositional matrix adjust.
Identities = 233/460 (50%), Positives = 333/460 (72%), Gaps = 13/460 (2%)
Query: 4 PFN---TENKK-------FRVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDH 53
PFN T+N++ +VPPHSIE+EQSVLGGL+LDN WD +A+ + +D FY H
Sbjct: 6 PFNKQQTDNRERDPQVAGLKVPPHSIEAEQSVLGGLMLDNERWDDVAERVVADDFYTRPH 65
Query: 54 RLIFKHIIKLINSSHPADVITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEI 113
R IF + +L S P D+IT+ +SL G + +GG +YL L++N PSAANI YA+I
Sbjct: 66 RHIFTEMARLQESGSPIDLITLAESLERQGQLDSVGGFAYLAELSKNTPSAANISAYADI 125
Query: 114 VRDRGILRKLITVTDEISSQAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPL 173
VR+R ++R++I+V +EI+ F +G+ + +LD AES++F IAE ++G + I +
Sbjct: 126 VRERAVVREMISVANEIAEAGFDPQGRTSEDLLDLAESRVFKIAESRANKDEGPKNIADV 185
Query: 174 LNRVIKRINKLHNRGTNDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLN 233
L+ + RI +L + + VTG++TG+ +L+K T+GLQP DLIIVA RPSMGKT F++N
Sbjct: 186 LDATVARIEQLFQQPHDG--VTGVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMN 243
Query: 234 IGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIK- 292
+ E+ A+ PV IFS+EM Q+ MR L S+ ++DQ K+RTG+L +DW RI+ ++
Sbjct: 244 LVENAAMLQDKPVLIFSLEMPSEQIMMRSLASLSRVDQTKIRTGQLDDEDWARISGTMGI 303
Query: 293 KINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISE 352
+ K +YID++ L E+R+ +RR++R+ G IG+I+IDYLQLM + +NR EI+E
Sbjct: 304 LLEKRNIYIDDSSGLTPTEVRSRARRIAREHGGIGLIMIDYLQLMRVPALSDNRTLEIAE 363
Query: 353 ISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEV 412
ISR+LK LAKE+N P++ALSQLNRSLEQR +KRP+ SDLRESG+IEQDAD+I+FIYRDEV
Sbjct: 364 ISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEV 423
Query: 413 YNQNSADKGIAEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452
Y++NS KGIAEII+ KQRNGPIG +RLTF+GQ+++F+N+
Sbjct: 424 YHENSDLKGIAEIIIGKQRNGPIGTVRLTFNGQWSRFDNY 463
>sp|P0ACB1|DNAB_SHIFL Replicative DNA helicase OS=Shigella flexneri GN=dnaB PE=3 SV=1
Length = 471
Score = 473 bits (1216), Expect = e-132, Method: Compositional matrix adjust.
Identities = 231/460 (50%), Positives = 330/460 (71%), Gaps = 13/460 (2%)
Query: 4 PFNTENKK----------FRVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDH 53
PFN + + +VPPHSIE+EQSVLGGL+LDN WD +A+ + +D FY H
Sbjct: 6 PFNKQQAEPRERDPQVAGLKVPPHSIEAEQSVLGGLMLDNERWDDVAERVVADDFYTRPH 65
Query: 54 RLIFKHIIKLINSSHPADVITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEI 113
R IF + +L S P D+IT+ +SL G + +GG +YL L++N PSAANI YA+I
Sbjct: 66 RHIFTEMARLQESGSPIDLITLAESLERQGQLDSVGGFAYLAELSKNTPSAANISAYADI 125
Query: 114 VRDRGILRKLITVTDEISSQAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPL 173
VR+R ++R++I+V +EI+ F +G+ + +LD AES++F IAE ++G + I +
Sbjct: 126 VRERAVVREMISVANEIAEAGFDPQGRTSEDLLDLAESRVFKIAESRANKDEGPKNIADV 185
Query: 174 LNRVIKRINKLHNRGTNDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLN 233
L+ + RI +L + + VTG++TG+ +L+K T+GLQP DLIIVA RPSMGKT F++N
Sbjct: 186 LDATVARIEQLFQQ--PHDGVTGVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMN 243
Query: 234 IGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIK- 292
+ E+ A+ PV IFS+EM Q+ MR L S+ ++DQ K+RTG+L +DW RI+ ++
Sbjct: 244 LVENAAMLQDKPVLIFSLEMPSEQIMMRSLASLSRVDQTKIRTGQLDDEDWARISGTMGI 303
Query: 293 KINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISE 352
+ K +YID++ L E+R+ +RR++R+ G IG+I+IDYLQLM + +NR EI+E
Sbjct: 304 LLEKRNIYIDDSSGLTPTEVRSRARRIAREHGGIGLIMIDYLQLMRVPALSDNRTLEIAE 363
Query: 353 ISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEV 412
ISR+LK LAKE+N P++ALSQLNRSLEQR +KRP+ SDLRESG+IEQDAD+I+FIYRDEV
Sbjct: 364 ISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEV 423
Query: 413 YNQNSADKGIAEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452
Y++NS KGIAEII+ KQRNGPIG +RLTF+GQ+++F+N+
Sbjct: 424 YHENSDLKGIAEIIIGKQRNGPIGTVRLTFNGQWSRFDNY 463
>sp|P0ACB0|DNAB_ECOLI Replicative DNA helicase OS=Escherichia coli (strain K12) GN=dnaB
PE=1 SV=1
Length = 471
Score = 473 bits (1216), Expect = e-132, Method: Compositional matrix adjust.
Identities = 231/460 (50%), Positives = 330/460 (71%), Gaps = 13/460 (2%)
Query: 4 PFNTENKK----------FRVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDH 53
PFN + + +VPPHSIE+EQSVLGGL+LDN WD +A+ + +D FY H
Sbjct: 6 PFNKQQAEPRERDPQVAGLKVPPHSIEAEQSVLGGLMLDNERWDDVAERVVADDFYTRPH 65
Query: 54 RLIFKHIIKLINSSHPADVITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEI 113
R IF + +L S P D+IT+ +SL G + +GG +YL L++N PSAANI YA+I
Sbjct: 66 RHIFTEMARLQESGSPIDLITLAESLERQGQLDSVGGFAYLAELSKNTPSAANISAYADI 125
Query: 114 VRDRGILRKLITVTDEISSQAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPL 173
VR+R ++R++I+V +EI+ F +G+ + +LD AES++F IAE ++G + I +
Sbjct: 126 VRERAVVREMISVANEIAEAGFDPQGRTSEDLLDLAESRVFKIAESRANKDEGPKNIADV 185
Query: 174 LNRVIKRINKLHNRGTNDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLN 233
L+ + RI +L + + VTG++TG+ +L+K T+GLQP DLIIVA RPSMGKT F++N
Sbjct: 186 LDATVARIEQLFQQ--PHDGVTGVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMN 243
Query: 234 IGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIK- 292
+ E+ A+ PV IFS+EM Q+ MR L S+ ++DQ K+RTG+L +DW RI+ ++
Sbjct: 244 LVENAAMLQDKPVLIFSLEMPSEQIMMRSLASLSRVDQTKIRTGQLDDEDWARISGTMGI 303
Query: 293 KINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISE 352
+ K +YID++ L E+R+ +RR++R+ G IG+I+IDYLQLM + +NR EI+E
Sbjct: 304 LLEKRNIYIDDSSGLTPTEVRSRARRIAREHGGIGLIMIDYLQLMRVPALSDNRTLEIAE 363
Query: 353 ISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEV 412
ISR+LK LAKE+N P++ALSQLNRSLEQR +KRP+ SDLRESG+IEQDAD+I+FIYRDEV
Sbjct: 364 ISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEV 423
Query: 413 YNQNSADKGIAEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452
Y++NS KGIAEII+ KQRNGPIG +RLTF+GQ+++F+N+
Sbjct: 424 YHENSDLKGIAEIIIGKQRNGPIGTVRLTFNGQWSRFDNY 463
>sp|Q8X5V3|DNAB_ECO57 Replicative DNA helicase OS=Escherichia coli O157:H7 GN=dnaB PE=3
SV=1
Length = 471
Score = 473 bits (1216), Expect = e-132, Method: Compositional matrix adjust.
Identities = 231/460 (50%), Positives = 330/460 (71%), Gaps = 13/460 (2%)
Query: 4 PFNTENKK----------FRVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDH 53
PFN + + +VPPHSIE+EQSVLGGL+LDN WD +A+ + +D FY H
Sbjct: 6 PFNKQQAEPRERDPQVAGLKVPPHSIEAEQSVLGGLMLDNERWDDVAERVVADDFYTRPH 65
Query: 54 RLIFKHIIKLINSSHPADVITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEI 113
R IF + +L S P D+IT+ +SL G + +GG +YL L++N PSAANI YA+I
Sbjct: 66 RHIFTEMARLQESGSPIDLITLAESLERQGQLDSVGGFAYLAELSKNTPSAANISSYADI 125
Query: 114 VRDRGILRKLITVTDEISSQAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPL 173
VR+R ++R++I+V +EI+ F +G+ + +LD AES++F IAE ++G + I +
Sbjct: 126 VRERAVVREMISVANEIAEAGFDPQGRTSEDLLDLAESRVFKIAESRANKDEGPKNIADV 185
Query: 174 LNRVIKRINKLHNRGTNDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLN 233
L+ + RI +L + + VTG++TG+ +L+K T+GLQP DLIIVA RPSMGKT F++N
Sbjct: 186 LDATVARIEQLFQQ--PHDGVTGVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMN 243
Query: 234 IGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIK- 292
+ E+ A+ PV IFS+EM Q+ MR L S+ ++DQ K+RTG+L +DW RI+ ++
Sbjct: 244 LVENAAMLQDKPVLIFSLEMPSEQIMMRSLASLSRVDQTKIRTGQLDDEDWARISGTMGI 303
Query: 293 KINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISE 352
+ K +YID++ L E+R+ +RR++R+ G IG+I+IDYLQLM + +NR EI+E
Sbjct: 304 LLEKRNIYIDDSSGLTPTEVRSRARRIAREHGGIGLIMIDYLQLMRVPALSDNRTLEIAE 363
Query: 353 ISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEV 412
ISR+LK LAKE+N P++ALSQLNRSLEQR +KRP+ SDLRESG+IEQDAD+I+FIYRDEV
Sbjct: 364 ISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEV 423
Query: 413 YNQNSADKGIAEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452
Y++NS KGIAEII+ KQRNGPIG +RLTF+GQ+++F+N+
Sbjct: 424 YHENSDLKGIAEIIIGKQRNGPIGTVRLTFNGQWSRFDNY 463
>sp|Q9CNL6|DNAB_PASMU Replicative DNA helicase OS=Pasteurella multocida (strain Pm70)
GN=dnaB PE=3 SV=1
Length = 467
Score = 473 bits (1216), Expect = e-132, Method: Compositional matrix adjust.
Identities = 229/441 (51%), Positives = 319/441 (72%), Gaps = 3/441 (0%)
Query: 14 VPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVI 73
VPPHS+E+EQSVLGG+L+ WD I+D L +D FY HR+IF+ + L+ P D+I
Sbjct: 18 VPPHSLEAEQSVLGGILIHPAHWDSISDMLIADDFYLAAHRVIFQEMENLLRQGKPIDLI 77
Query: 74 TVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQ 133
+++ L +E++GG +YL L++N PS +NI YA IVRDR ILR LI+V+++++
Sbjct: 78 NLYEFLREKNLSEDVGGFAYLAELSKNTPSVSNIVSYAAIVRDRAILRDLISVSNDVAQS 137
Query: 134 AFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTNDND 193
+ ++G EVK ILDEAE K+F+I+EK N+G Q I +L + I RI +L ++ N
Sbjct: 138 CYTTKGMEVKDILDEAERKVFAISEKRTTSNEGPQNICAILEKTIDRI-ELLSKTEGHNG 196
Query: 194 VTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM 253
+TG+STGF LDK T+GLQP DLIIVA RPSMGKT F++N+ E+ A+++ PV +FS+EM
Sbjct: 197 ITGVSTGFDALDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAALKSDKPVLVFSLEM 256
Query: 254 SGIQLAMRMLGSVGKLDQHKLRTGR-LSSDDWPRINDSIKKI-NKSQLYIDETPSLNVIE 311
Q+ MR L S+ ++DQ K+RTG+ L DW +I ++ NK LYID++ L E
Sbjct: 257 PAEQIMMRSLASLSRVDQTKIRTGQGLDQSDWSKIGSTMGLFANKPNLYIDDSSGLTPTE 316
Query: 312 LRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILAL 371
LR+ +RR+ R+ G + +I++DYLQLM A +NR EI+EISR+LK LAKE+ P++AL
Sbjct: 317 LRSRARRVYRENGGLSLIMVDYLQLMRAPGFADNRTLEIAEISRSLKALAKELEVPVIAL 376
Query: 372 SQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQR 431
SQLNR+LE R +KRP+ SDLRESG+IEQDAD+I+FIYRDEVYN+NS DKG+AEII+ KQR
Sbjct: 377 SQLNRTLENRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYNENSEDKGVAEIIIGKQR 436
Query: 432 NGPIGNIRLTFSGQYTKFNNF 452
NGPIG +RL F GQ+++F+N
Sbjct: 437 NGPIGRVRLAFRGQFSRFDNL 457
>sp|P0A1Q4|DNAB_SALTY Replicative DNA helicase OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=dnaB PE=3 SV=1
Length = 471
Score = 461 bits (1185), Expect = e-129, Method: Compositional matrix adjust.
Identities = 224/442 (50%), Positives = 319/442 (72%), Gaps = 3/442 (0%)
Query: 12 FRVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPAD 71
+VPPHSIE+EQSVLGGL+LDN WD +A+ + ++ FY HR IF + +L S P D
Sbjct: 24 IKVPPHSIEAEQSVLGGLMLDNERWDDVAERVVAEDFYTRPHRHIFTEMGRLQESGSPID 83
Query: 72 VITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEIS 131
+IT+ +SL G + +GG +YL L++N PSAANI YA+IVR+R ++R +I V EI+
Sbjct: 84 LITLAESLERQGQLDSVGGFAYLAELSKNTPSAANISAYADIVRERAVVRDMIAVAHEIA 143
Query: 132 SQAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTND 191
+ +G+ ++LD AES++F IAE ++G + I +L+ + RI +L +
Sbjct: 144 DAGYDPQGRNSDELLDLAESRVFQIAENRANKDEGPKSIDQILDATVARIEQLFQQ--PH 201
Query: 192 NDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251
+ VTG+ TG+ +L+K T+GLQ DLIIVA RPSMGKT F++N+ E+ A+ PV IFS+
Sbjct: 202 DGVTGVDTGYQDLNKKTAGLQRSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSL 261
Query: 252 EMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIK-KINKSQLYIDETPSLNVI 310
EM G Q+ MRML S+ ++DQ ++RTG+L +DW RI+ ++ + K +YID++ L
Sbjct: 262 EMPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPT 321
Query: 311 ELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILA 370
E+R+ +RR+ R+ G + +I+IDYLQLM S +NR EI+EISR+LK LAKE+ P++A
Sbjct: 322 EVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPVVA 381
Query: 371 LSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQ 430
LSQLNRSLEQR +KRP+ SDLRESG+IEQDAD+I+FIYRDEVY++NS KGIAEII+ KQ
Sbjct: 382 LSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIIIGKQ 441
Query: 431 RNGPIGNIRLTFSGQYTKFNNF 452
RNGPIG +RLTF+GQ+++F+N+
Sbjct: 442 RNGPIGTVRLTFNGQWSRFDNY 463
>sp|P0A1Q5|DNAB_SALTI Replicative DNA helicase OS=Salmonella typhi GN=dnaB PE=3 SV=1
Length = 471
Score = 461 bits (1185), Expect = e-129, Method: Compositional matrix adjust.
Identities = 224/442 (50%), Positives = 319/442 (72%), Gaps = 3/442 (0%)
Query: 12 FRVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPAD 71
+VPPHSIE+EQSVLGGL+LDN WD +A+ + ++ FY HR IF + +L S P D
Sbjct: 24 IKVPPHSIEAEQSVLGGLMLDNERWDDVAERVVAEDFYTRPHRHIFTEMGRLQESGSPID 83
Query: 72 VITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEIS 131
+IT+ +SL G + +GG +YL L++N PSAANI YA+IVR+R ++R +I V EI+
Sbjct: 84 LITLAESLERQGQLDSVGGFAYLAELSKNTPSAANISAYADIVRERAVVRDMIAVAHEIA 143
Query: 132 SQAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTND 191
+ +G+ ++LD AES++F IAE ++G + I +L+ + RI +L +
Sbjct: 144 DAGYDPQGRNSDELLDLAESRVFQIAENRANKDEGPKSIDQILDATVARIEQLFQQ--PH 201
Query: 192 NDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251
+ VTG+ TG+ +L+K T+GLQ DLIIVA RPSMGKT F++N+ E+ A+ PV IFS+
Sbjct: 202 DGVTGVDTGYQDLNKKTAGLQRSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSL 261
Query: 252 EMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIK-KINKSQLYIDETPSLNVI 310
EM G Q+ MRML S+ ++DQ ++RTG+L +DW RI+ ++ + K +YID++ L
Sbjct: 262 EMPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPT 321
Query: 311 ELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILA 370
E+R+ +RR+ R+ G + +I+IDYLQLM S +NR EI+EISR+LK LAKE+ P++A
Sbjct: 322 EVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPVVA 381
Query: 371 LSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQ 430
LSQLNRSLEQR +KRP+ SDLRESG+IEQDAD+I+FIYRDEVY++NS KGIAEII+ KQ
Sbjct: 382 LSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIIIGKQ 441
Query: 431 RNGPIGNIRLTFSGQYTKFNNF 452
RNGPIG +RLTF+GQ+++F+N+
Sbjct: 442 RNGPIGTVRLTFNGQWSRFDNY 463
>sp|P57611|DNAB_BUCAI Replicative DNA helicase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=dnaB PE=3 SV=1
Length = 459
Score = 460 bits (1183), Expect = e-128, Method: Compositional matrix adjust.
Identities = 219/443 (49%), Positives = 328/443 (74%), Gaps = 3/443 (0%)
Query: 11 KFRVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPA 70
+ ++PPHS+E+EQSVLGGL+LDN WD +++ + +D F+ HRLIF+ + KL++ +P
Sbjct: 13 RLKIPPHSLEAEQSVLGGLMLDNEQWDSVSEHVVADDFFSKPHRLIFQEMQKLLDLGYPI 72
Query: 71 DVITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEI 130
D+IT+ +SL G E +G SYL L++N PS ANI YA+IVR+R I+R++I V ++I
Sbjct: 73 DLITLSESLEQKGKLESVGRFSYLAELSKNTPSTANITAYADIVRERAIVREMILVANKI 132
Query: 131 SSQAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTN 190
++ + ++G++ +++LD AES +F IAEK + G + ++ +L+ + I KL +
Sbjct: 133 ANAGYDTQGRKSEELLDYAESSVFKIAEKRFKKDSGPKNVEQILDETVASIEKLF--LSP 190
Query: 191 DNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFS 250
+ VTGI+TG+ +L+K TSGLQ +LII+A RPSMGKT F++N+ E+ A+ PV IFS
Sbjct: 191 HDGVTGINTGYQDLNKKTSGLQRSELIIIAARPSMGKTTFAMNLCENAAMLYDKPVLIFS 250
Query: 251 MEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIK-KINKSQLYIDETPSLNV 309
+EM G Q+ MRML S+ +++Q ++RTG+L+++DW RI+ +I + K +YID++ +L
Sbjct: 251 LEMPGEQIMMRMLASLSRVNQARIRTGQLNNEDWARISGTINILLKKKNIYIDDSSALTP 310
Query: 310 IELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPIL 369
E+R+ +RR+ R+ + +I++DYLQLM S ENR EI+EISR LK LAKE+ P++
Sbjct: 311 SEVRSRARRIYRENNGLTLIMVDYLQLMRVPSLSENRTLEIAEISRTLKALAKELQVPVI 370
Query: 370 ALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSK 429
ALSQLNRSLEQR +KRP+ SDLRESG++EQDAD+I+FIYRDE+YN+NS KGIAEII+ K
Sbjct: 371 ALSQLNRSLEQRSDKRPVNSDLRESGSLEQDADLIMFIYRDEIYNENSDLKGIAEIIIGK 430
Query: 430 QRNGPIGNIRLTFSGQYTKFNNF 452
QRNGPIG +RLTF+G +++F+N+
Sbjct: 431 QRNGPIGTVRLTFNGHWSRFDNY 453
>sp|P45256|DNAB_HAEIN Replicative DNA helicase OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=dnaB PE=3 SV=2
Length = 468
Score = 458 bits (1178), Expect = e-128, Method: Compositional matrix adjust.
Identities = 220/441 (49%), Positives = 326/441 (73%), Gaps = 3/441 (0%)
Query: 14 VPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVI 73
+PPHS E+EQ+VLGG++L N WD IA+ + +D FY + HRLIF + L+ + P D+I
Sbjct: 19 IPPHSTEAEQAVLGGIMLSNQHWDGIAERVIADDFYTFQHRLIFTEMEHLMRNQSPIDLI 78
Query: 74 TVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQ 133
T+ +L + G ++E+GG +YL L+ N P+A NI YA+IVR++ ILR+LI+V + I+
Sbjct: 79 TLDQALRSRGVSDEVGGFAYLAELSNNTPNAINILAYADIVREKAILRELISVGNRIAEN 138
Query: 134 AFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTNDND 193
++ +G+++K ILDEAE ++F+IAEK ++G Q + +L I++I+ L ++ N +
Sbjct: 139 SYSPKGQDIKLILDEAEREVFAIAEKRTTSSEGPQNVINVLESTIEKIDIL-SKLENHSG 197
Query: 194 VTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM 253
VTG++TGF +LDK T+GLQP DLIIVA RPSMGKT F++N+ E+ A+ ++ PV +FS+EM
Sbjct: 198 VTGVTTGFTDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEM 257
Query: 254 SGIQLAMRMLGSVGKLDQHKLRTGR-LSSDDWPRINDSIKKI-NKSQLYIDETPSLNVIE 311
Q+ MRM+ S+ ++DQ K+RTG+ L +W +I + K+ L+ID++ L +
Sbjct: 258 PAEQIMMRMIASLARVDQTKIRTGQNLDEIEWNKIASVVGMFKQKNNLFIDDSSGLTPTD 317
Query: 312 LRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILAL 371
+R+ +RR+ R+ G + +I++DYLQLM A + +NR EI+EISR+LK LAKE+ P++AL
Sbjct: 318 VRSRARRVYRENGGLSMIMVDYLQLMRAPAFSDNRTLEIAEISRSLKALAKELQVPVVAL 377
Query: 372 SQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQR 431
SQLNR+LEQR +KRP+ SDLRESG+IEQDAD+I+FIYRDEVYN NS DKG+AEII+ KQR
Sbjct: 378 SQLNRTLEQRGDKRPVNSDLRESGSIEQDADLIMFIYRDEVYNDNSEDKGVAEIIIGKQR 437
Query: 432 NGPIGNIRLTFSGQYTKFNNF 452
NGPIG +RL F+GQ+++F+N
Sbjct: 438 NGPIGRVRLKFNGQFSRFDNL 458
>sp|Q8K932|DNAB_BUCAP Replicative DNA helicase OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=dnaB PE=3 SV=1
Length = 465
Score = 455 bits (1171), Expect = e-127, Method: Compositional matrix adjust.
Identities = 218/443 (49%), Positives = 327/443 (73%), Gaps = 3/443 (0%)
Query: 11 KFRVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPA 70
+ ++PPHS+E+EQSVLGGL+LDN WD +++ + +D F+ HRLIF+ + +L++ HP
Sbjct: 19 RLKIPPHSLEAEQSVLGGLMLDNEQWDSVSEHVVADDFFSKPHRLIFQEMQQLLDLGHPI 78
Query: 71 DVITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEI 130
D+IT+ +SL G E +G SYL L++N PS ANI YA+I+R+R I+R++I V ++I
Sbjct: 79 DLITLSESLEQKGKLESVGRFSYLAELSKNTPSTANIIAYADIIRERAIVREMILVANKI 138
Query: 131 SSQAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTN 190
++ + ++G++ +++LD AES +F IAEK + G + I+ +L+ + I KL N
Sbjct: 139 ANAGYDTQGRKSEELLDYAESSVFKIAEKRFKKDSGPKNIEQILDETVTSIEKLF-LSPN 197
Query: 191 DNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFS 250
D VTGI+TG+ +L+K TSGLQP +LII+A RPSMGKT F++N+ E+ A+ PV IFS
Sbjct: 198 DG-VTGINTGYQDLNKKTSGLQPSELIIIAARPSMGKTTFAMNLCENAAMLYDKPVLIFS 256
Query: 251 MEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKI-NKSQLYIDETPSLNV 309
+EM G Q+ MRML S+ +++Q ++RTG+L+ +DW R++ +I + K +YID++ +L
Sbjct: 257 LEMPGEQIMMRMLASLSRVNQARIRTGQLNDEDWSRMSGTINVLLKKKNIYIDDSSALTP 316
Query: 310 IELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPIL 369
E+R+ +RR+ R+ + +I++DYLQLM S +NR EI+EISR LK LAKE+ P++
Sbjct: 317 SEVRSRARRIYRENKGLTLIMVDYLQLMRVPSLSDNRTLEIAEISRTLKALAKELQVPVI 376
Query: 370 ALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSK 429
ALSQLNRSLEQR +KRP+ SDLRESG++EQDAD+I+FIYRDE+Y++NS KG+AEII+ K
Sbjct: 377 ALSQLNRSLEQRSDKRPVNSDLRESGSLEQDADLIMFIYRDEIYHENSDFKGVAEIIIGK 436
Query: 430 QRNGPIGNIRLTFSGQYTKFNNF 452
QRNGPIG I LTF+G +++F+N+
Sbjct: 437 QRNGPIGTICLTFNGHWSRFDNY 459
>sp|Q89A52|DNAB_BUCBP Replicative DNA helicase OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=dnaB PE=3 SV=1
Length = 463
Score = 442 bits (1136), Expect = e-123, Method: Compositional matrix adjust.
Identities = 223/438 (50%), Positives = 323/438 (73%), Gaps = 3/438 (0%)
Query: 16 PHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITV 75
P+S+E+EQS+LGGL+LDN WD I++ ++ + F+ H+LIF+ + L+N +P D+IT+
Sbjct: 20 PNSLEAEQSILGGLMLDNEQWDYISEKISENDFFSLSHQLIFREMKYLLNKGYPIDLITL 79
Query: 76 FDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQAF 135
+SL G E IG +YL L++N+PS ANI YA+IVR+R ++RK+I + ++I +
Sbjct: 80 SESLEQKGKLEYIGRFAYLAELSKNVPSTANITTYADIVRERSMVRKIIKIANKIIQAGY 139
Query: 136 ISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTNDNDVT 195
RGK +++L+ AESKI SI+E+ N G + I+ LL+ + I KL N T +T
Sbjct: 140 DPRGKTSQELLNLAESKILSISEQNFQKNSGPKNIEELLDITLANIEKLFN--TPYKGIT 197
Query: 196 GISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSG 255
GI+TG+ +L+ TSGLQP DLII+A RPSMGKT F++NI E+IA+ K PV IFS+EMSG
Sbjct: 198 GINTGYQDLNNKTSGLQPSDLIIIAARPSMGKTTFAMNICENIAMTYKKPVLIFSLEMSG 257
Query: 256 IQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIK-KINKSQLYIDETPSLNVIELRA 314
Q+ MRML S+ +++Q KLRTG+L+ +DW RI+ +I + K +YID++ +L E+R+
Sbjct: 258 EQIMMRMLSSLSRVNQEKLRTGQLNDEDWARISSTINILLKKKNMYIDDSSTLTPSEMRS 317
Query: 315 NSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQL 374
SR++ R+ + +I++DYLQL+ S NR EI+EISR LK LAKE+ PI+ALSQL
Sbjct: 318 RSRKIYRENNGLSLIMVDYLQLIKVPSLIGNRTLEIAEISRMLKSLAKELKIPIIALSQL 377
Query: 375 NRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQRNGP 434
NRSLEQR++KRPI SDLRESG++EQDAD+I+FIYRDE+Y++++ KGIAEII+ KQRNGP
Sbjct: 378 NRSLEQRRDKRPINSDLRESGSLEQDADLIMFIYRDELYHEHTDLKGIAEIIIGKQRNGP 437
Query: 435 IGNIRLTFSGQYTKFNNF 452
IG I+LTF+G +++F+N+
Sbjct: 438 IGTIKLTFNGHWSRFDNY 455
>sp|P37469|DNAC_BACSU Replicative DNA helicase OS=Bacillus subtilis (strain 168) GN=dnaC
PE=1 SV=2
Length = 454
Score = 407 bits (1045), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/441 (46%), Positives = 303/441 (68%), Gaps = 8/441 (1%)
Query: 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADV 72
R+PP +IE+EQ+VLG + L +A ++ L D FYR H+ I+ ++ L + P D+
Sbjct: 8 RLPPQNIEAEQAVLGAIFLQPSALTLASEVLIPDDFYRMSHQKIYNAMLVLGDRGEPVDL 67
Query: 73 ITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISS 132
+TV L+NT EE+GG+SYL +A ++P+AANI YA+IV ++ ILR+LI I+
Sbjct: 68 VTVTSELANTDLLEEVGGISYLTDIANSVPTAANIEYYAKIVEEKSILRRLIRTATTIAQ 127
Query: 133 QAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTNDN 192
+ +R EV+ +L EAE I +A+++ FQ I+ +L + I +LHNR
Sbjct: 128 DGY-TREDEVEDLLSEAEKTIMEVAQRKNT--SAFQNIKDVLVQTYDNIEQLHNR---KG 181
Query: 193 DVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252
D+TGI TGF ELD++T+G Q DLIIVA RPS+GKTAF+LNI +++A + VAIFS+E
Sbjct: 182 DITGIPTGFTELDRMTAGFQRNDLIIVAARPSVGKTAFALNIAQNVATKTDESVAIFSLE 241
Query: 253 MSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIEL 312
M QL MRML + G ++ LRTG L+ +DW ++ ++ ++ S +YID+TP + V E+
Sbjct: 242 MGAEQLVMRMLCAEGNINAQNLRTGNLTEEDWGKLTMAMGSLSNSGIYIDDTPGIRVSEI 301
Query: 313 RANSRRLSRQCGKIGVIIIDYLQLMSANSRG-ENRATEISEISRNLKGLAKEINCPILAL 371
RA RRL ++ G +G+I+IDYLQL+ + R +NR E+SEISR LK +A+E+ P++AL
Sbjct: 302 RAKCRRLKQESG-LGMILIDYLQLIQGSGRSKDNRQQEVSEISRELKSIARELQVPVIAL 360
Query: 372 SQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQR 431
SQL+R +EQRQ+KRP+MSD+RESG+IEQDAD++ F+YRD+ Y++ + +K I EII++KQR
Sbjct: 361 SQLSRGVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYYDKETENKNIIEIIIAKQR 420
Query: 432 NGPIGNIRLTFSGQYTKFNNF 452
NGP+G + L F +Y KF N
Sbjct: 421 NGPVGTVSLAFVKEYNKFVNL 441
>sp|Q6ABX1|DNAB_LEIXX Replicative DNA helicase OS=Leifsonia xyli subsp. xyli (strain
CTCB07) GN=dnaB PE=3 SV=1
Length = 457
Score = 352 bits (902), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 174/443 (39%), Positives = 276/443 (62%), Gaps = 13/443 (2%)
Query: 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADV 72
R PPH + +EQS LGG+LL A + + + FY H +++ I+ L + P DV
Sbjct: 22 RTPPHDLLAEQSALGGMLLSKDAVADVVEVVRGTDFYIPKHEIVYDAILSLYSHGEPTDV 81
Query: 73 ITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISS 132
ITV D L+ G GG YL++L +P+AAN YA IV ++ +LR+L+ I+
Sbjct: 82 ITVTDELTKLGELSRAGGAEYLHTLTSLVPTAANAGYYANIVAEKALLRRLVEAGTRITQ 141
Query: 133 QAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQ---PLLNRVIKRINKLHNRGT 189
+ + G EV +++ A+++I+S+ G Q+++ PL V I+++
Sbjct: 142 MGYKAEG-EVLDLVNNAQAEIYSVT--------GTQEVEDYVPLTEAVTVAIDEIEASKH 192
Query: 190 NDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIF 249
D +TG+ TGF ELD++T+GL PG +IIVA RP++GK+ +L+ AI++ LP F
Sbjct: 193 KDGSMTGVPTGFTELDELTNGLHPGQMIIVAARPALGKSTLALDFARAAAIKHDLPTIFF 252
Query: 250 SMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNV 309
S+EM ++AMR+L + + +R G + + DW I + +IN + LYID++P++ +
Sbjct: 253 SLEMGRSEIAMRLLSAEATVPLQHMRKGTVDNRDWTTIAATRGRINDAPLYIDDSPNMTL 312
Query: 310 IELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPIL 369
+E+RA RRL ++ G + ++IIDYLQLM++ R E+R E+SE SR LK LAKE+ P++
Sbjct: 313 VEIRAKCRRLKQRVG-LKMVIIDYLQLMTSGKRVESRQQEVSEFSRALKLLAKELQVPVI 371
Query: 370 ALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSK 429
ALSQLNR EQR +K P +SDLRESG+IEQDADV++ ++R+ Y +++ G A++IV+K
Sbjct: 372 ALSQLNRGPEQRADKLPALSDLRESGSIEQDADVVVLLHRESAYEKDNPRAGEADLIVAK 431
Query: 430 QRNGPIGNIRLTFSGQYTKFNNF 452
RNGP +++ F G Y++F +
Sbjct: 432 HRNGPTKTVKVAFQGMYSRFADM 454
>sp|P49519|DNAB_ODOSI Probable replicative DNA helicase OS=Odontella sinensis GN=dnaB
PE=3 SV=1
Length = 455
Score = 326 bits (836), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 174/441 (39%), Positives = 277/441 (62%), Gaps = 11/441 (2%)
Query: 16 PHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITV 75
PH+ +E+ VL LL+ + A + L D FY +HR I+K I+ + + P D++T+
Sbjct: 18 PHNFLAEKIVLSSLLISSEAIETCLRSLTIDAFYFKNHREIYKAILIMYKKNTPIDIVTL 77
Query: 76 FDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQAF 135
L N G +IGG+ L L +P+ + Y I++D+ + R LI + E + +
Sbjct: 78 NTFLQNQGLLPKIGGIKVLIELVNQLPNLVYLEEYIRIIQDKYVRRSLIKLGYEAINSGY 137
Query: 136 ISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTNDNDVT 195
I+ +++IL E ++FS+ EI F + L ++++ + ++ +
Sbjct: 138 IT-NISLEEILISLEKQMFSLTN-EIKNQDVFSSVD-LFSQILLELKYKSSKPV----LA 190
Query: 196 GISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSG 255
G+S+GF++LD +T G Q DLII+AGRPSMGKTAF LNI +I + KLP+ FS+EMS
Sbjct: 191 GLSSGFYDLDSLTQGFQKSDLIIIAGRPSMGKTAFCLNIATNIVKKYKLPILFFSLEMSK 250
Query: 256 IQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRAN 315
QLA R+L + ++ +LR G L+ DW +++ IK ++ +ID+TP+L++ +R+
Sbjct: 251 EQLAYRLLSAEALINPMRLRNGHLNKKDWLKLHRIIKNLSSLPFFIDDTPNLSIQAIRSK 310
Query: 316 SRRLSRQCGKIGVIIIDYLQLM-SANSRGENRATEISEISRNLKGLAKEINCPILALSQL 374
++L + IG+++IDYLQLM S+ + NR E+S+I+R+LK +A+E N P++ALSQL
Sbjct: 311 VKKLLFEQNTIGLVVIDYLQLMQSSTLKSSNRVQELSQITRSLKNIAREFNVPVIALSQL 370
Query: 375 NRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADK---GIAEIIVSKQR 431
+R++E R KRPI+SDLRESG+IEQDAD++L +YRD+ YN N+ + I E+I++KQR
Sbjct: 371 SRNVENRIIKRPILSDLRESGSIEQDADLVLMLYRDQYYNSNNENDEQLDITELILAKQR 430
Query: 432 NGPIGNIRLTFSGQYTKFNNF 452
NGPIG I+L F YTKF ++
Sbjct: 431 NGPIGTIQLKFDANYTKFFDY 451
>sp|Q55418|DNAB_SYNY3 Replicative DNA helicase OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=dnaB PE=1 SV=1
Length = 872
Score = 308 bits (788), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 167/389 (42%), Positives = 247/389 (63%), Gaps = 10/389 (2%)
Query: 14 VPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVI 73
+PP +IE+E+ +LGG+LLD A +I D L D FY HRLI++ ++ L S P D++
Sbjct: 7 LPPQNIEAEECILGGILLDPEAMGRIIDLLVVDAFYVKAHRLIYEAMLSLHGQSQPTDLM 66
Query: 74 TVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQ 133
+V L + + E IGG+ L L SA NI R+A ++ D+ + R+LI +I
Sbjct: 67 SVSSWLQDHHHFEAIGGMVKLTQLLDRTISAVNIDRFAALIMDKYLRRQLIAAGHDIVDL 126
Query: 134 AFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTNDND 193
+ KE++ I DE+E KIF + + G + L ++KLH + ++
Sbjct: 127 GY-ETSKELETIFDESEQKIFRLTQSRP--QAGLVPLSETLVNTFIELDKLHEKLSS--- 180
Query: 194 VTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM 253
G+ T F++LD +T GLQ DLII+AGRPSMGKTAF L I +IA LPVAIFS+EM
Sbjct: 181 -PGVETQFYDLDAMTGGLQRADLIILAGRPSMGKTAFGLGIAANIAKNQNLPVAIFSLEM 239
Query: 254 SGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELR 313
S QLA+R++ S +D ++LRTG S ++ + ++ ++ +YID+T S++V ++R
Sbjct: 240 SKEQLALRLVASESLIDSNRLRTGHFSQAEFEPLTAAMGTLSSLPIYIDDTASISVTQMR 299
Query: 314 ANSRRL-SRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALS 372
+ RRL S Q G +G+++IDYLQLM S +NR E+S+I+R+LKGLA+EIN P++ALS
Sbjct: 300 SQVRRLQSEQKGPLGMVLIDYLQLMEGGS--DNRVQELSKITRSLKGLAREINAPVIALS 357
Query: 373 QLNRSLEQRQNKRPIMSDLRESGAIEQDA 401
QL+R++E R NKRP+MSDLRESG I D+
Sbjct: 358 QLSRAVESRTNKRPMMSDLRESGCISGDS 386
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 47/66 (71%)
Query: 387 IMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQRNGPIGNIRLTFSGQY 446
+ +D+ +IEQDAD+I+ IYRDE YN ++ D G+AE+++ K RNGP G ++L F ++
Sbjct: 801 VANDIIVHNSIEQDADLIMMIYRDEYYNPDTPDPGVAELLIVKHRNGPTGVVKLLFKPEF 860
Query: 447 TKFNNF 452
T+F N
Sbjct: 861 TQFLNL 866
>sp|Q68WJ2|DNAB_RICTY Replicative DNA helicase OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=dnaB PE=3 SV=1
Length = 497
Score = 303 bits (775), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 175/468 (37%), Positives = 273/468 (58%), Gaps = 33/468 (7%)
Query: 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADV 72
RV P +I++EQ +LG ++ +N +++ L +++F+ H+ I+ I K+I A
Sbjct: 24 RVLPSNIQAEQMLLGAIITNNELLSYVSEFLRNEHFFEPIHQKIYDAIEKIIEKGLIATP 83
Query: 73 ITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISS 132
IT+ L+ +EI G+ YL L N Y +I+ D I R LI + +E+ +
Sbjct: 84 ITLRSMLTQDALFQEIEGVEYLAKLITMSMMVINPIDYGKIIYDLAIKRNLINIGEEVVN 143
Query: 133 QAF-ISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTND 191
A+ S K+ ++ AE+K++ +A +E K F Q+ + + INK N+
Sbjct: 144 NAYNASLAVAAKEQIEHAEAKLYDLA-REGLNEKSFTQVGISIAESLASINKAMK---NN 199
Query: 192 NDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKL------- 244
+ V GISTG +LD G DLII+AGRPSMGKTAF++N+ + +L
Sbjct: 200 DHVIGISTGLLDLDNKLFGFHNSDLIILAGRPSMGKTAFAINLALNTCNNMRLKNIRDNQ 259
Query: 245 ---PVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYI 301
V FS+EMS QL R+L ++D LRTG LS + + R+ +++ Q +I
Sbjct: 260 EIKSVGFFSLEMSSEQLTTRLLSLCAEIDSTSLRTGMLSEEKYNRLRKEANTLSELQFFI 319
Query: 302 DETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLA 361
D+TP+L++ +R +RR+ R+ +G++ IDYLQL+ S+ ENR EISEI++ LK +A
Sbjct: 320 DDTPALSISAIRTRARRMKRKHN-LGILFIDYLQLIRGVSKSENRVNEISEITQGLKAIA 378
Query: 362 KEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVY-------- 413
KE+N P++ALSQL+R++E R++K+P++SDLRESG IEQDAD+++FIYR+E Y
Sbjct: 379 KELNIPVIALSQLSRAVELREDKKPMLSDLRESGTIEQDADIVMFIYREEYYLTRKEPAA 438
Query: 414 ----NQNSADK-----GIAEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452
+ DK IA+II++K RNGP+GNI L + Q++KF N
Sbjct: 439 GDAKHAEWLDKLNKVYNIADIIIAKHRNGPVGNISLYYDSQFSKFGNL 486
>sp|Q92HG8|DNAB_RICCN Replicative DNA helicase OS=Rickettsia conorii (strain ATCC VR-613
/ Malish 7) GN=dnaB PE=3 SV=1
Length = 494
Score = 299 bits (766), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 174/469 (37%), Positives = 278/469 (59%), Gaps = 35/469 (7%)
Query: 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADV 72
RV P ++++EQ +LG +L +N + +++ L ++F+ H+ I+K I K+ A
Sbjct: 24 RVLPSNVQAEQMLLGAILTNNELLNYVSEFLRDEHFFEPIHQKIYKAIEKITEKGLTATP 83
Query: 73 ITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISS 132
IT+ L+ +E+ G YL L N Y +I+ D I R LI + +E+ +
Sbjct: 84 ITLRSMLTQDELFQEVEGAEYLAKLITMSMMVINPLDYGKIIYDLAIKRNLINIGEEVVN 143
Query: 133 QAFISRGK-EVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTND 191
A+ S + E K+ ++ AE+K++ +A + + K F +I ++ + IN R +
Sbjct: 144 NAYNSSLEVEAKEQIEHAEAKLYDLASEGLN-EKSFTKIGISISESLASIN----RAMKN 198
Query: 192 ND-VTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKL------ 244
ND + GISTG +LD G DLII+AGRPSMGKTAF++N+ + +L
Sbjct: 199 NDHIIGISTGLIDLDNKLCGFHNSDLIILAGRPSMGKTAFAINLALNACNNMRLKNIRDN 258
Query: 245 ----PVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLY 300
V FS+EMS QL R+L ++D LRTG L + + R+ +++ Q +
Sbjct: 259 QEIQSVGFFSLEMSSEQLTTRLLSMCAEIDSTSLRTGILGEEKYNRLRKEANTLSELQFF 318
Query: 301 IDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGL 360
ID+TP+L++ +R +RR+ R+ +G++ IDYLQL+ S+ ENR +EISEI++ LK +
Sbjct: 319 IDDTPALSISAIRTRARRMKRK-HNLGILFIDYLQLIRGVSKSENRVSEISEITQGLKAI 377
Query: 361 AKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVY------- 413
AKE+N P++ALSQL+R++E R++K+P++SDLRESG IEQDAD+++FIYR+E Y
Sbjct: 378 AKELNIPVIALSQLSRAVELREDKKPMLSDLRESGTIEQDADIVMFIYREEYYLTRKEPA 437
Query: 414 ---NQNSA--DK-----GIAEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452
+++A DK IA+IIV+K RNGP+GN+ L + Q++KF N
Sbjct: 438 AGDAKHAAWLDKLNKVYNIADIIVAKHRNGPVGNVPLYYDSQFSKFGNL 486
>sp|Q9ZD08|DNAB_RICPR Replicative DNA helicase OS=Rickettsia prowazekii (strain Madrid E)
GN=dnaB PE=3 SV=1
Length = 486
Score = 298 bits (764), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 175/469 (37%), Positives = 272/469 (57%), Gaps = 35/469 (7%)
Query: 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADV 72
RV P +I++EQ +LG ++ +N +++ L +++F+ H+ I+ I K+I A
Sbjct: 16 RVLPSNIQAEQMLLGAIITNNALLSYVSEFLRNEHFFEPIHQKIYDAIEKIIEKGLIATP 75
Query: 73 ITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISS 132
IT+ L+ +EI G YL L N Y +I+ D I R LI + +E+ +
Sbjct: 76 ITLRSMLTQDALFKEIEGEGYLAKLITMSMMVINPIDYGKIIYDLAIKRNLINIGEEVVN 135
Query: 133 QAF-ISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTND 191
A+ S K+ ++ AE+K++ + KE K F ++ ++ + IN R +
Sbjct: 136 NAYNSSLAVAAKEQIEYAEAKLYDLT-KEGLNEKSFTKVGISISESLASIN----RAMKN 190
Query: 192 ND-VTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKL------ 244
ND V GISTG +LD G DLII+AGRPSMGKTAF++N+ + +L
Sbjct: 191 NDHVIGISTGLLDLDNKLFGFHNSDLIILAGRPSMGKTAFAINLALNTCNNMRLKNIRDN 250
Query: 245 ----PVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLY 300
V FS+EMS QL R+L ++D LRTG LS D + R+ +++ Q +
Sbjct: 251 QEIKSVGFFSLEMSSEQLTTRLLSLCAEIDSTALRTGMLSEDKYNRLRKEANTLSELQFF 310
Query: 301 IDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGL 360
ID+TP+L++ +R +RR+ R+ +G++ IDYLQL+ S+ ENR EISEI++ LK +
Sbjct: 311 IDDTPALSISAIRTRARRMKRKHN-LGILFIDYLQLIRGVSKSENRVNEISEITQGLKAI 369
Query: 361 AKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVY------- 413
AKE+N P++ALSQL+R++E R++K+P++SDLRESG IEQDAD+++FIYR+E Y
Sbjct: 370 AKELNIPVIALSQLSRAVELREDKKPMLSDLRESGTIEQDADIVMFIYREEYYLTRKEPV 429
Query: 414 -----NQNSADK-----GIAEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452
+ DK IA+II++K RNGP+GN+ L + Q++KF N
Sbjct: 430 AGDAKHAEWLDKLNKVYNIADIIIAKHRNGPVGNVSLYYDSQFSKFGNL 478
>sp|Q4UL62|DNAB_RICFE Replicative DNA helicase OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=dnaB PE=3 SV=1
Length = 494
Score = 297 bits (760), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 173/469 (36%), Positives = 274/469 (58%), Gaps = 35/469 (7%)
Query: 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADV 72
RV P ++++EQ +LG +L +N +++ L S++F+ H+ I+ I K+ A
Sbjct: 24 RVLPSNVQAEQMLLGAILTNNELLSYVSEFLRSEHFFEPIHQKIYNAIEKITEKGLIATP 83
Query: 73 ITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISS 132
IT+ L+ +EI G YL L N Y +I+ D I R LI + +E+ +
Sbjct: 84 ITLRSMLTQDELFQEIEGAEYLAKLITMSMMVINPVDYGKIIYDLAIKRNLINIGEEVVN 143
Query: 133 QAFISRGK-EVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTND 191
A+ S + E ++ ++ AE+K++ +A + + K F +I ++ + IN R +
Sbjct: 144 DAYNSSLEIEAREQIEHAEAKLYDLASESLN-EKSFTRIGIPISESLASIN----RAMKN 198
Query: 192 ND-VTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKL------ 244
ND V GISTG +LD G DL+I+AGRPSMGKTAF++N+ + +L
Sbjct: 199 NDHVIGISTGLLDLDNKLFGFHNSDLLILAGRPSMGKTAFAINLALNACNNMRLKNIRDN 258
Query: 245 ----PVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLY 300
V FS+EMS QL R+L ++D LRTG L + + R+ +++ Q +
Sbjct: 259 QEIQSVGFFSLEMSSEQLTTRLLSMCAEIDSTSLRTGILGEEKYNRLRKEANTLSELQFF 318
Query: 301 IDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGL 360
ID+TP+L++ +R +RR+ R+ +G++ IDYLQL+ S+ ENR +EISEI++ LK +
Sbjct: 319 IDDTPALSISAIRTRARRMKRKHN-LGILFIDYLQLIRGVSKSENRVSEISEITQGLKAI 377
Query: 361 AKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVY------- 413
AKE+N P++ALSQL+R++E R++K+P++SDLRESG IEQDAD+++FIYR+E Y
Sbjct: 378 AKELNIPVIALSQLSRAVELREDKKPMLSDLRESGTIEQDADIVMFIYREEYYLTRKEPA 437
Query: 414 -----NQNSADK-----GIAEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452
+ DK IA+IIV+K RNGP+GN+ L + Q++KF N
Sbjct: 438 AGDAKHAEWLDKLNKVYNIADIIVAKHRNGPVGNVPLYYDSQFSKFGNL 486
>sp|P59966|DNAB_MYCBO Replicative DNA helicase OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=dnaB PE=3 SV=1
Length = 874
Score = 296 bits (759), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 146/386 (37%), Positives = 245/386 (63%), Gaps = 7/386 (1%)
Query: 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADV 72
R PP + +EQSVLGG+LL A + + L FYR H+ ++ I+ L PAD
Sbjct: 22 RQPPQDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYDAILDLYGRGEPADA 81
Query: 73 ITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISS 132
+TV L G IGG YL++L +P+AAN YA IV ++ +LR+L+ +
Sbjct: 82 VTVAAELDRRGLLRRIGGAPYLHTLISTVPTAANAGYYASIVAEKALLRRLVEAGTRVVQ 141
Query: 133 QAFI-SRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTND 191
+ + G +V +++D A+++I+ +A++ + ++ F ++ LL + I+ + + G
Sbjct: 142 YGYAGAEGADVAEVVDRAQAEIYDVADRRL--SEDFVALEDLLQPTMDEIDAIASSG--- 196
Query: 192 NDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251
G++TGF ELD++T+GL PG ++IVA RP +GK+ L+ +I +++ IFS+
Sbjct: 197 GLARGVATGFTELDEVTNGLHPGQMVIVAARPGVGKSTLGLDFMRSCSIRHRMASVIFSL 256
Query: 252 EMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIE 311
EMS ++ MR+L + K+ +R+GR+S DDW R+ + +I+++ L+ID++P+L ++E
Sbjct: 257 EMSKSEIVMRLLSAEAKIKLSDMRSGRMSDDDWTRLARRMSEISEAPLFIDDSPNLTMME 316
Query: 312 LRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILAL 371
+RA +RRL RQ + +I++DYLQLM++ + E+R E+SE SR+LK LAKE+ P++A+
Sbjct: 317 IRAKARRL-RQKANLKLIVVDYLQLMTSGKKYESRQVEVSEFSRHLKLLAKELEVPVVAI 375
Query: 372 SQLNRSLEQRQNKRPIMSDLRESGAI 397
SQLNR EQR +K+P+++DLRESG +
Sbjct: 376 SQLNRGPEQRTDKKPMLADLRESGCL 401
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 35/57 (61%)
Query: 396 AIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452
++EQDADV++ ++R + ++++ G A+ I++K RNGP + + ++F N
Sbjct: 816 SLEQDADVVILLHRPDAFDRDDPRGGEADFILAKHRNGPTKTVTVAHQLHLSRFANM 872
>sp|P71715|DNAB_MYCTU Replicative DNA helicase OS=Mycobacterium tuberculosis GN=dnaB PE=1
SV=2
Length = 874
Score = 296 bits (759), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/386 (37%), Positives = 245/386 (63%), Gaps = 7/386 (1%)
Query: 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADV 72
R PP + +EQSVLGG+LL A + + L FYR H+ ++ I+ L PAD
Sbjct: 22 RQPPQDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYDAILDLYGRGEPADA 81
Query: 73 ITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISS 132
+TV L G IGG YL++L +P+AAN YA IV ++ +LR+L+ +
Sbjct: 82 VTVAAELDRRGLLRRIGGAPYLHTLISTVPTAANAGYYASIVAEKALLRRLVEAGTRVVQ 141
Query: 133 QAFI-SRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTND 191
+ + G +V +++D A+++I+ +A++ + ++ F ++ LL + I+ + + G
Sbjct: 142 YGYAGAEGADVAEVVDRAQAEIYDVADRRL--SEDFVALEDLLQPTMDEIDAIASSG--- 196
Query: 192 NDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251
G++TGF ELD++T+GL PG ++IVA RP +GK+ L+ +I +++ IFS+
Sbjct: 197 GLARGVATGFTELDEVTNGLHPGQMVIVAARPGVGKSTLGLDFMRSCSIRHRMASVIFSL 256
Query: 252 EMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIE 311
EMS ++ MR+L + K+ +R+GR+S DDW R+ + +I+++ L+ID++P+L ++E
Sbjct: 257 EMSKSEIVMRLLSAEAKIKLSDMRSGRMSDDDWTRLARRMSEISEAPLFIDDSPNLTMME 316
Query: 312 LRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILAL 371
+RA +RRL RQ + +I++DYLQLM++ + E+R E+SE SR+LK LAKE+ P++A+
Sbjct: 317 IRAKARRL-RQKANLKLIVVDYLQLMTSGKKYESRQVEVSEFSRHLKLLAKELEVPVVAI 375
Query: 372 SQLNRSLEQRQNKRPIMSDLRESGAI 397
SQLNR EQR +K+P+++DLRESG +
Sbjct: 376 SQLNRGPEQRTDKKPMLADLRESGCL 401
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 35/57 (61%)
Query: 396 AIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452
++EQDADV++ ++R + ++++ G A+ I++K RNGP + + ++F N
Sbjct: 816 SLEQDADVVILLHRPDAFDRDDPRGGEADFILAKHRNGPTKTVTVAHQLHLSRFANM 872
>sp|Q8YZA1|DNAB_NOSS1 Replicative DNA helicase OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=dnaB PE=3 SV=1
Length = 879
Score = 295 bits (756), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 162/394 (41%), Positives = 253/394 (64%), Gaps = 10/394 (2%)
Query: 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADV 72
R+PP +IE+E+++LGG+LLD A ++++ L ++ FY HR I++ ++L P D+
Sbjct: 14 RLPPQNIEAEEAILGGILLDPEAIGRVSEVLITEAFYISAHRDIYQAALRLHAQGKPTDL 73
Query: 73 ITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISS 132
++V L++ IGG + L +L SA NI A +V ++ + R+LI +EI
Sbjct: 74 LSVTSWLTDNELLTRIGGRNKLATLVDRTVSAVNIDALAGLVMEKYLRRQLIKAGNEIVH 133
Query: 133 QAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTNDN 192
+ + KE+ +LD+AE K+F + ++ G I L + I + N+G
Sbjct: 134 LGYETE-KELPIVLDQAEQKVFGVTQERP--QSGLVHIADTLINNFQEIEE-RNQGIA-- 187
Query: 193 DVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252
+ GI GF++LD +TSG Q DLIIVAGRPSMGKTAF LN+ +IA KLPVA+FS+E
Sbjct: 188 -LPGIPCGFYDLDAMTSGFQRSDLIIVAGRPSMGKTAFCLNLANNIAATMKLPVAVFSLE 246
Query: 253 MSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIEL 312
MS QL R+L S +++ LR+GRLS W ++ +I +++ ++ID+TP++ V ++
Sbjct: 247 MSKEQLVQRLLASEAQIESGYLRSGRLSQTQWEPLSRAISMLSEMPIFIDDTPNITVTQM 306
Query: 313 RANSRRLSRQCG-KIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILAL 371
R+ +RRL + G ++G+I+IDYLQLM G+NR E+S+I+R+LKGLA+E++ P++AL
Sbjct: 307 RSQARRLQAEQGVELGLIVIDYLQLMEGG--GDNRVQELSKITRSLKGLARELSVPVIAL 364
Query: 372 SQLNRSLEQRQNKRPIMSDLRESGAIEQDADVIL 405
SQL+R +E R NKRP++SDLRESG + D+ V L
Sbjct: 365 SQLSRGVEARTNKRPMLSDLRESGCLTGDSLVTL 398
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 45/57 (78%)
Query: 396 AIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452
+IEQDAD+++ +YRD+ YN ++ D+G+AE+IV+K RNGP G ++L F Q+TKF N
Sbjct: 818 SIEQDADLVIMLYRDDYYNSDTPDRGLAEVIVAKHRNGPTGTVKLLFDPQFTKFKNL 874
>sp|Q1RI04|DNAB_RICBR Replicative DNA helicase OS=Rickettsia bellii (strain RML369-C)
GN=dnaB PE=3 SV=1
Length = 498
Score = 291 bits (744), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 171/473 (36%), Positives = 274/473 (57%), Gaps = 39/473 (8%)
Query: 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADV 72
RV P ++++EQ +LG +L +N + +++ L S++F+ H+ I+ I + A
Sbjct: 23 RVLPSNVQAEQMLLGAILTNNELLNYVSEFLRSEHFFEPIHQKIYNGIEVITEKGLIATP 82
Query: 73 ITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISS 132
IT+ L+N E+ G YL L N Y +I+ D I R LI + +E+ +
Sbjct: 83 ITLRSMLANDELFHEMEGAEYLAKLVTMSMMVINPIDYGKIIYDLAIKRYLINIGEEVVN 142
Query: 133 QAFISRGK-EVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTND 191
A+ S + E K+ ++ AESK++ +A + I K F +I ++ I IN R +
Sbjct: 143 DAYNSSLEFEAKEQIERAESKLYDLASEGIN-EKSFTKIAIPISESIASIN----RAMKN 197
Query: 192 ND-VTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIG----EHIAIENK--- 243
ND V GISTG +LD G DL+I+AGRP+MGKTAF+LN+ ++ I+NK
Sbjct: 198 NDHVIGISTGLIDLDSKLFGFHNSDLVILAGRPAMGKTAFALNLALNACNNMLIKNKRDN 257
Query: 244 ---LPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLY 300
V FS+EMS QL R+L +D LRTG ++ ++ R+ +++ +
Sbjct: 258 EEVQSVGFFSLEMSSEQLTTRLLSMSAGIDSTTLRTGMINEANYNRLRKEAIALSELSFF 317
Query: 301 IDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGL 360
ID+TP+L + +R +RR+ R+ +G++ +DYLQL+ S+ +NR E+SEI++ LK +
Sbjct: 318 IDDTPALTISAIRTRARRMKRKHN-LGILFVDYLQLIRGVSKSDNRVNEVSEITQGLKAI 376
Query: 361 AKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVY------- 413
AKE+N P++ALSQL+R++E R++KRP++SDLRESG+IEQDAD+++FIYR+E Y
Sbjct: 377 AKELNIPVIALSQLSRAVELREDKRPMLSDLRESGSIEQDADIVMFIYREEYYLSRKEPA 436
Query: 414 --------------NQNSADKGIAEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452
+ S I +II++K R+GP+GN++L + QY+KF N
Sbjct: 437 ASDPKHAEKYAEWQDNMSKAHNITDIIIAKHRSGPVGNVQLFYDSQYSKFVNL 489
>sp|O83097|DNAB_TREPA Replicative DNA helicase OS=Treponema pallidum (strain Nichols)
GN=dnaB PE=1 SV=1
Length = 438
Score = 288 bits (737), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 157/448 (35%), Positives = 269/448 (60%), Gaps = 19/448 (4%)
Query: 3 VPFNTENKKFRVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIK 62
+P T+ K ++PPH++E+E++VLG +LLD++A + L++ FY H+ IF+ +++
Sbjct: 4 MPNPTQELKGKIPPHNLEAERAVLGAVLLDDSALSTATEQLSASSFYSAAHQRIFQALVE 63
Query: 63 LINSSHPADVITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRK 122
L + D++ + + L + + +GG +Y+ SL +PSAAN+ Y IV D + R
Sbjct: 64 LSDLGQRPDILVLSEHLRSCEALDFVGGSAYVASLTDAVPSAANVEYYTRIVCDAAMRRS 123
Query: 123 LITVTDEISSQAFISRGKEVKQILDEAESKIFSIA-EKEICINKGFQQIQPLLNRVIKRI 181
L+ V I+++AF + +L+ A+ +I+ + + + K + + P L +
Sbjct: 124 LLKVARIITAEAF-NDTVSGNIVLETAQREIYDLTNARRVATFKLLKNLIPDL------V 176
Query: 182 NKLHNRGTNDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE 241
N + R N +D+ GI+TG LD +T G Q +LI++ RPSMGKTA ++ + +IAI
Sbjct: 177 NTIETRYRNQSDLVGIATGLTALDNLTGGFQNSELIVIGARPSMGKTALAMTMASNIAIR 236
Query: 242 NKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYI 301
++P A FS+EMS + L R++ + + LR G L D+ RI ++ ++ + LYI
Sbjct: 237 QRIPTAFFSLEMSNLLLMQRLIAAESGVSATNLRKGLLQLSDFGRIQNAAGEMYDAPLYI 296
Query: 302 DETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLA 361
+ P++ +++LRA +RRL Q KI +I +DYL L+ A++ R + + IS++LK LA
Sbjct: 297 VDVPNMKLLDLRAVARRLCVQ-EKIQIIFVDYLGLIVADNPFAPRYEQFAAISQSLKSLA 355
Query: 362 KEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKG 421
+E++ PI+ALSQ+ R E P ++D+R SGAIEQDADV++F++RD +N +
Sbjct: 356 RELDIPIVALSQVGRPAE---GSAPNLADIRGSGAIEQDADVVMFLHRD----RNETET- 407
Query: 422 IAEIIVSKQRNGPIGNIRLTFSGQYTKF 449
++I++KQRNGPIG + L F +T+F
Sbjct: 408 --QLILAKQRNGPIGTVELEFQASFTRF 433
>sp|O30477|DNAB_RHOMR Replicative DNA helicase OS=Rhodothermus marinus GN=dnaB PE=3 SV=1
Length = 941
Score = 264 bits (674), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 157/406 (38%), Positives = 243/406 (59%), Gaps = 31/406 (7%)
Query: 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADV 72
RVPP ++E EQ+VLG +L++ A + + L + FY H+ IF+ I++L + D+
Sbjct: 44 RVPPQAVELEQAVLGAMLIEPEAIPRALEILTPEAFYDGRHQRIFRAIVRLFEQNRGVDL 103
Query: 73 ITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISS 132
+TV + L TG E+ G YL+ L + SAAN+ +A I+ ++ +LR++I V +
Sbjct: 104 LTVTEELRRTGELEQAGDTIYLSELTTRVASAANVEYHARIIAEK-LLRRMIEVMTLLVG 162
Query: 133 QAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTNDN 192
+A+ + ++LDE E++IF ++ ++ + K + + ++ ++R+ +H R
Sbjct: 163 RAY-DPAADAFELLDEVEAEIFRLS--DVHLRKAARSMNEVVKETLERLEAIHGR---PG 216
Query: 193 DVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSL---NIGEHIAIENKLPVAIF 249
+TG+ +GF +LD +T G Q GDLII+A RPSMGKTAF+L N H VAIF
Sbjct: 217 GITGVPSGFHQLDALTGGWQRGDLIIIAARPSMGKTAFALSCRNAALHPHYGTG--VAIF 274
Query: 250 SMEMSGIQLAMRMLGSVG-------KLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYID 302
S+EM QLA R+L + D RTG WP + + ++ + ++ID
Sbjct: 275 SLEMGAEQLAQRLLTAEAASMPRRPAPDGCATRTG----VSWP----ARRPLSDAPIFID 326
Query: 303 ETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSAN--SRGENRATEISEISRNLKGL 360
+TPSL V+ELRA RRL + IG++I+DYLQLM A+ R NR EI++ISR+LK L
Sbjct: 327 DTPSLGVLELRAKCRRLKAE-HDIGLVIVDYLQLMQASHMPRNANREQEIAQISRSLKAL 385
Query: 361 AKEINCPILALSQLNRSLEQR-QNKRPIMSDLRESGAIEQDADVIL 405
AKE+N P++ALSQL+R++E R +KRP +SDLRESG + D + L
Sbjct: 386 AKELNVPVVALSQLSRAVETRGGDKRPQLSDLRESGCLAGDTLITL 431
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 5/71 (7%)
Query: 387 IMSDLRESGAIEQDADVILFIYRDEVYN-----QNSADKGIAEIIVSKQRNGPIGNIRLT 441
+ +D+ +IEQDADV+LFIYR E Y + +GIAEII+ KQRNGP G +RL
Sbjct: 841 VANDIIAHNSIEQDADVVLFIYRPERYGITVDENGNPTEGIAEIIIGKQRNGPTGTVRLA 900
Query: 442 FSGQYTKFNNF 452
F QY +F N
Sbjct: 901 FINQYARFENL 911
>sp|Q9ZJM5|DNAB_HELPJ Replicative DNA helicase OS=Helicobacter pylori (strain J99)
GN=dnaB PE=3 SV=1
Length = 486
Score = 246 bits (629), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 154/465 (33%), Positives = 239/465 (51%), Gaps = 45/465 (9%)
Query: 22 EQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITVFDSLSN 81
E+ VL G++L N ++I L FY H L F+ +KL + P D + +
Sbjct: 14 ERIVLSGIVLANHKIEEIHSVLEPSDFYYPPHGLFFEIALKLHEVNCPIDENFIRQKMPK 73
Query: 82 TGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQAFISRGKE 141
E ++ + NI Y E +++ I RKL T+ + I QA S K
Sbjct: 74 DKQISEDDLVAIFAA-----SPIDNIEAYVEEIKNASIKRKLFTLANTIREQALESAQKS 128
Query: 142 VKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTNDNDVTGISTGF 201
IL+ E +++++ +GF+ I+ +L + I + +G+ VTGI TGF
Sbjct: 129 -SDILNAVEREVYALLNGSTI--EGFRGIKEVLESTMNLITENQRKGSLK--VTGIPTGF 183
Query: 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMR 261
+LD TSG G L+I+ RPSMGKT+ +N+ A+ + VA+FS+EMS QLA+R
Sbjct: 184 VQLDNYTSGFNQGSLVILGARPSMGKTSLMMNMVLS-ALNDDRGVAVFSLEMSAEQLALR 242
Query: 262 MLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSR 321
L + ++ H L + RL D W + +++ +L+ + + + ++R R+L
Sbjct: 243 ALSDLTSINMHDLESARLDDDQWENLAKCFDHLSQKKLFFYDKSYVRMDQIRLQLRKLKS 302
Query: 322 QCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQR 381
Q ++G+ IDYLQLMS N + R +I+EISR LK LA+E+ PI+AL QLNRSLE R
Sbjct: 303 QHKELGIAFIDYLQLMSGNKATKERHEQIAEISRELKTLARELEIPIIALVQLNRSLENR 362
Query: 382 QNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGI------------------- 422
+KRPI+SD+++SG IEQDAD++LF+YR +Y + D I
Sbjct: 363 DDKRPILSDIKDSGGIEQDADIVLFLYRGYIYQMRAEDNKIDKLKKEGKVEEAQELHLKV 422
Query: 423 ---------------AEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452
AEIIV+K RNG G + F+ +T++ +
Sbjct: 423 NEERRIHKQNGSIEEAEIIVAKNRNGATGTVYTRFNAPFTRYEDM 467
>sp|O25916|DNAB_HELPY Replicative DNA helicase OS=Helicobacter pylori (strain ATCC 700392
/ 26695) GN=dnaB PE=1 SV=1
Length = 488
Score = 243 bits (619), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 151/465 (32%), Positives = 239/465 (51%), Gaps = 45/465 (9%)
Query: 22 EQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITVFDSLSN 81
E+ VL G++L N +++ L FY + L F+ +KL P D + +
Sbjct: 14 ERIVLSGIVLANHKIEEVHSVLEPSDFYYPPNGLFFEIALKLHEEDCPIDENFIRQKMPK 73
Query: 82 TGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQAFISRGKE 141
+E ++ + NI Y E +++ I RKL + + I QA S K
Sbjct: 74 DKQIKEEDLVAIFAA-----SPIDNIEAYVEEIKNASIKRKLFGLANTIREQALESAQKS 128
Query: 142 VKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTNDNDVTGISTGF 201
IL E +++++ +GF+ I+ +L + I + +G+ + VTGI TGF
Sbjct: 129 -SDILGAVEREVYALLNGSTI--EGFRNIKEVLESAMDLITENQRKGSLE--VTGIPTGF 183
Query: 202 FELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMR 261
+LD TSG G L+I+ RPSMGKT+ +N+ A+ + VA+FS+EMS QLA+R
Sbjct: 184 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLS-ALNDDRGVAVFSLEMSAEQLALR 242
Query: 262 MLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSR 321
L + ++ H L +GRL D W + +++ +L+ + + + ++R R+L
Sbjct: 243 ALSDLTSINMHDLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKS 302
Query: 322 QCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQR 381
Q ++G+ IDYLQLMS + + R +I+EISR LK LA+E+ PI+AL QLNRSLE R
Sbjct: 303 QHKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLARELEIPIIALVQLNRSLENR 362
Query: 382 QNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGI------------------- 422
+KRPI+SD+++SG IEQDAD++LF+YR +Y + D I
Sbjct: 363 DDKRPILSDIKDSGGIEQDADIVLFLYRGYIYQMRAEDNKIDKLKKEGKIEEAQELYLKV 422
Query: 423 ---------------AEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452
AEIIV+K RNG G + F+ +T++ +
Sbjct: 423 NEERRIHKQNGSIEEAEIIVAKNRNGATGTVYTRFNAPFTRYEDM 467
>sp|P51333|DNAB_PORPU Probable replicative DNA helicase OS=Porphyra purpurea GN=dnaB PE=3
SV=1
Length = 568
Score = 223 bits (568), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 133/367 (36%), Positives = 218/367 (59%), Gaps = 17/367 (4%)
Query: 43 LNSDYFYRYDHRLIFKHIIKLINSSHPADVITVFDSLSNTGNAEEIGGLSYLNSLAQNIP 102
L+ D+FY + L+++ I++ +N ++++ +L+ ++G L + L +N P
Sbjct: 16 LSPDFFYFKSNSLVYRAILETVNPIDKIALVSLLTALNTNNLIRQLGRLETIMKLIENSP 75
Query: 103 SAANIRRYAEIVRDRGILRKLITVTDEISSQAFISRGKEVKQILDEAESKIFSIAEK--- 159
++ I Y++++ D + R L+ D S IS K KQI +S I S+A +
Sbjct: 76 ASNIIYEYSKVILDNYVKRLLLKSGD---SLCLISCSK--KQI---TQSVITSVASQLTI 127
Query: 160 --EICINKGFQQIQPLLNRVIKRINKLHNRGTNDNDVTGISTGFFELDKITSGLQPGDLI 217
EI ++G + + ++ ++ N +GI +GF++LD IT+G Q DLI
Sbjct: 128 AYEILEDEGTYTLAEIFASLLVSLDTKKKISIN----SGIFSGFWQLDLITNGFQKSDLI 183
Query: 218 IVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTG 277
I+AGRPSMGKTAF++NI HI ++ V +FS+EMS QL R+L L+ K+++G
Sbjct: 184 IIAGRPSMGKTAFAINITRHIIKTSQYYVILFSLEMSTEQLLRRILAQECHLNSQKIQSG 243
Query: 278 RLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLM 337
+L++ +W RI + K + YID++ ++ ++ + L Q KI +IIIDYLQL+
Sbjct: 244 QLTNVEWQRIVEESKILANLNFYIDDSAEISCDIIKVKVKLLRLQGKKIKLIIIDYLQLL 303
Query: 338 SANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAI 397
+ + ENR+ E+S I+R+LK LA+E+N PIL LSQLNR+LE R NKRP++SDLRESG I
Sbjct: 304 QESKKSENRSQELSLITRSLKILARELNLPILVLSQLNRNLESRHNKRPLLSDLRESGCI 363
Query: 398 EQDADVI 404
+ + ++
Sbjct: 364 SKFSHIM 370
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 395 GAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQRNGPIGNIRLTFSGQYTKFNN 451
+IEQDAD+++ +YR+ YN+ + + EIIV+K RNGP+G +L F F N
Sbjct: 511 NSIEQDADLVIMLYRESYYNKEMEMEDMTEIIVAKHRNGPLGTFQLKFDANLANFLN 567
>sp|P03006|VG12_BPP22 Replicative DNA helicase OS=Enterobacteria phage P22 GN=12 PE=3
SV=1
Length = 458
Score = 206 bits (524), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 153/446 (34%), Positives = 239/446 (53%), Gaps = 43/446 (9%)
Query: 22 EQSVLGGLL---LDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITVFDS 78
E SV+GGLL L TA D +A L + F +R F+ I K + + D + V
Sbjct: 6 EASVIGGLLIGGLTPTASDVLA-TLEPEAFSIPLYRKAFEVIRKQARNRNLIDGLMV--- 61
Query: 79 LSNTGNAEEIGGLSYLNSL---AQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQAF 135
AEE G Y ++ A++ PSAAN++ YA +V D R+++ + DE+
Sbjct: 62 ------AEECGD-EYATAVMMTARSCPSAANLKGYAGMVADSYQRRQVLQLLDEMREP-- 112
Query: 136 ISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPL-LNRVI-KRINKLHNRGTNDND 193
IS G LD + + + ++ I K +++P+ L +I + L R N +
Sbjct: 113 ISNG-----TLDASGRAMDELVKRLSSIRKPRNEVKPVRLGEIINDYTDTLDRRLRNGEE 167
Query: 194 VTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLP-------V 246
+ TG ELD IT G+ DL+I+A RP MGKT +L I E +A +P V
Sbjct: 168 SDTLKTGIEELDAITGGMNAEDLVIIAARPGMGKTELALKIAEGVA-SRVIPGSGVRRGV 226
Query: 247 AIFSMEMSGIQLAMRMLGSVGKLDQHKLRT-GRLSSDDWPRINDSIKKINKSQLYIDETP 305
IFSMEMS IQ+ R + G + LR R+ + W R+ +K + + +++ +
Sbjct: 227 LIFSMEMSAIQVVERGIAGAGMMSVSVLRNPSRMDDEGWARVASGMKLLAELDVWVVDAS 286
Query: 306 SLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEIN 365
L+V E+R+ S R ++ + +I+ DYL L+ + E I+ IS +LK +AK++
Sbjct: 287 RLSVEEIRSISERHKQEHPNLSLIMADYLGLIE-KPKAERNDLAIAHISGSLKAMAKDLK 345
Query: 366 CPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEI 425
P+++LSQL+R +E+R NKRP +DLR+SG+IEQDAD I+ +YR+ VY++NS+ AEI
Sbjct: 346 TPVISLSQLSRDVEKRPNKRPTNADLRDSGSIEQDADSIIMLYREAVYDENSSAAPFAEI 405
Query: 426 IVSKQRNGPIGNIRLTFSGQYTKFNN 451
IV+K R G +G + Y +F N
Sbjct: 406 IVTKNRFGSLGTV-------YQRFCN 424
>sp|Q1XDF3|DNAB_PORYE Probable replicative DNA helicase OS=Porphyra yezoensis GN=dnaB
PE=3 SV=1
Length = 566
Score = 204 bits (520), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 139/409 (33%), Positives = 221/409 (54%), Gaps = 29/409 (7%)
Query: 46 DYFYRYDHRLIFKHIIKLINSSHPADVITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAA 105
D+FY L+++ ++ +N + V F +L N +++ L+ + SL + P +
Sbjct: 19 DFFYFTSTSLLYRAALENVNHAKTKSVRNFFINLKNEKMIQDLNELNEVFSLIEQAPLSD 78
Query: 106 NIRRYAEIVRDRGILRKLITVTDEISSQAFISRGKEVKQILDEAESKIFSIAEK-----E 160
I Y+ +V D I R L+ D S IS K++ + + I SI + E
Sbjct: 79 TISEYSAVVIDNYIKRLLLACGD---SLCLISCSKQLIE-----QKNITSIVSQLTKAYE 130
Query: 161 ICINKGFQQIQPLLNRVIKRINKLHNRGTNDNDVTGISTGFFELDKITSGLQPGDLIIVA 220
I K Q + +L ++ ++ N + I +GF ELD IT G + DLII+A
Sbjct: 131 ILDEKDTQTLATILANLLVHLDTRKKISIN----SSILSGFTELDSITQGFKKSDLIILA 186
Query: 221 GRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLS 280
GRPSMGKTAF++NI ++ + + V +FS+EMS QL R+L L+ K+++G+L+
Sbjct: 187 GRPSMGKTAFAINITRYVINQKRSYVILFSLEMSTEQLLRRILAQECNLNGQKIQSGQLN 246
Query: 281 SDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSAN 340
+D+W + K + LYID++ ++ ++ + Q I +IIIDYLQL+ +
Sbjct: 247 NDEWQYVIQKSKTLANLNLYIDDSAKISTDTIKTKVKFFKLQGKNIELIIIDYLQLLQES 306
Query: 341 SRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQD 400
+ +NR+ E+S I+R+LK LAK+++ PILALSQLNR+LE R +KRP++SDLRESG I +
Sbjct: 307 RQSDNRSQELSLITRSLKILAKDLSLPILALSQLNRNLETRSDKRPLLSDLRESGCISK- 365
Query: 401 ADVILFIY-RDEVYNQ-----NSADKGIAEIIVSKQRNGPIGNIRLTFS 443
F Y + +YNQ N K I I S Q+ I+ + S
Sbjct: 366 -----FNYLQTSLYNQLQILFNCYYKKIEVINFSAQKQQLFLAIKCSIS 409
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 38/57 (66%)
Query: 395 GAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQRNGPIGNIRLTFSGQYTKFNN 451
+IEQDAD+++ +YR+ Y Q + + E+I++K RNGP G +L F+ Q KF++
Sbjct: 509 NSIEQDADLVIMLYRESYYTQETRSRDFTEVIIAKHRNGPTGTFQLKFNAQIAKFSD 565
>sp|Q9F5P4|DNAB_MYCIT Replicative DNA helicase (Fragment) OS=Mycobacterium intracellulare
GN=dnaB PE=3 SV=1
Length = 576
Score = 195 bits (496), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 89/225 (39%), Positives = 153/225 (68%), Gaps = 1/225 (0%)
Query: 228 TAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRI 287
+ L+ +I++++ IFS+EMS ++ MR+L + K+ +R+GR+S +DW R+
Sbjct: 351 STLGLDFLRSCSIKHRMASVIFSLEMSKSEIVMRLLSAEAKIKLADMRSGRMSDEDWTRL 410
Query: 288 NDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRA 347
+ +I+++ LYID++P+L ++E+RA +RRL RQ + ++++DYLQLMS+ + E+R
Sbjct: 411 ARRMSEISEAPLYIDDSPNLTMMEIRAKARRL-RQKADLRLVVVDYLQLMSSGKKVESRQ 469
Query: 348 TEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFI 407
E+SE SR LK LAKE+ P++A+SQLNR EQR +K+P++SDLRESG++EQDAD+++ +
Sbjct: 470 LEVSEFSRQLKLLAKELEVPVVAISQLNRGPEQRTDKKPMLSDLRESGSLEQDADMVILL 529
Query: 408 YRDEVYNQNSADKGIAEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452
R + + ++ G A+ I++K RNGP + + ++F N
Sbjct: 530 NRPDAFERDDPRGGEADFILAKHRNGPTKTVTVAHQLHLSRFANM 574
>sp|O78411|DNAB_GUITH Probable replicative DNA helicase OS=Guillardia theta GN=dnaB PE=3
SV=1
Length = 599
Score = 193 bits (491), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 129/402 (32%), Positives = 225/402 (55%), Gaps = 21/402 (5%)
Query: 17 HSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITVF 76
+++++E+ ++ +L++ + +I +++ FY H+++++ I N H V+
Sbjct: 7 YNLKAEKHLIIQILVEKDFFLQIYTKIDTQVFYFQSHQILYRSI----NILHTKKVLINL 62
Query: 77 DSLSNTGNAEEIGG--LSYLNSLAQNIPS--AANIRRYAEIVRDRGILRKLITVTDEISS 132
+L + ++E + ++YL +L + + NI +++ D I R+L +I S
Sbjct: 63 PNLLSLLHSELVSETVINYLITLFNDRDNFRILNINDSLKVLLDNFIRRELQNSCAKIVS 122
Query: 133 QAFISRGKEVKQILDEAESKIFSIAEKEICINK--GFQQIQPLLNRVIKRINKLHNRGTN 190
F + V+ +L ++ I +I NK + I LL I I+K NR T+
Sbjct: 123 LTF-NFNLSVETLLQKSNLLISNIN----TYNKKVSLKSISQLLLETILEIDKKTNRSTH 177
Query: 191 DNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFS 250
+ TGFF+LD I GLQ DLII+AGRPSMGKTAF L++ ++A P+ IFS
Sbjct: 178 ------VLTGFFDLDHILVGLQKSDLIIIAGRPSMGKTAFMLSLVRNVADIQSFPIVIFS 231
Query: 251 MEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVI 310
+EMS QL R++ + + +LR G +S +W +N ++ ++ +Y+D+ +L+V+
Sbjct: 232 LEMSSKQLIYRLISNETNIATSRLREGNISISEWEILNRAMTILSNLNIYLDDENNLDVL 291
Query: 311 ELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILA 370
++++ L + G IG+I+IDYLQL+ + R E+S I+R LK +AK+ N P++
Sbjct: 292 DIQSKLASLQQIYGDIGLIVIDYLQLLQYKEKSSQRHIELSYITRYLKLIAKDFNLPLVV 351
Query: 371 LSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEV 412
LSQL+R++E R NKRPI+SDL+ESG + + F+ D V
Sbjct: 352 LSQLSRNVEFRLNKRPILSDLKESGCLSYATNQPYFLKSDNV 393
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 395 GAIEQDADVILFIYRDEVYNQNSADKGI--AEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452
+IEQDADV+LF+YRD Y N I E+IV+K R+G IG + L F+ F N
Sbjct: 536 NSIEQDADVVLFLYRDSYYQHNLKQSNIDMCEVIVAKHRHGTIGMVNLIFNPNTVSFMNL 595
>sp|P46394|DNAB_MYCLE Replicative DNA helicase OS=Mycobacterium leprae (strain TN)
GN=dnaB PE=3 SV=2
Length = 604
Score = 192 bits (487), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 97/239 (40%), Positives = 165/239 (69%), Gaps = 5/239 (2%)
Query: 217 IIVAGR---PSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHK 273
+ +AGR P+ T L+ +I+++L IFS+EMS ++ MR+L + K+
Sbjct: 366 LYLAGRGMVPTHNST-LGLDFMRSCSIKHRLASVIFSLEMSKSEIVMRLLSAEAKIKLAD 424
Query: 274 LRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDY 333
+R+GR++ DDW R+ + +I+++ LYID++P+L ++E+RA +RRL RQ + ++++DY
Sbjct: 425 MRSGRMTDDDWTRLARRMSEISEAPLYIDDSPNLTMMEIRAKARRL-RQKTNLKLVVVDY 483
Query: 334 LQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRE 393
LQLM++ R E+R E+SE SR+LK LAKE+ P++A+SQLNRS EQR +K+P++SDLRE
Sbjct: 484 LQLMTSGKRFESRQVEVSEFSRHLKLLAKELELPVVAISQLNRSPEQRTDKKPMLSDLRE 543
Query: 394 SGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452
SG++EQDADV++ ++R + ++++ G A++I++K RNGP + + ++F N
Sbjct: 544 SGSLEQDADVVILLHRPDAFDRDDPRGGEADLILAKHRNGPTKTVTVAHQLHLSRFTNM 602
Score = 143 bits (361), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 132/253 (52%), Gaps = 15/253 (5%)
Query: 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADV 72
R PP + +EQSVLGG+LL A + + L S FYR H+ ++ I+ L PAD
Sbjct: 23 RQPPQDLAAEQSVLGGMLLSKDAIADVLERLRSGDFYRPAHQNVYDAILDLYGRGEPADA 82
Query: 73 ITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISS 132
+TV L G IGG YL++L +P+AAN YA IV ++ +LR+L+ +
Sbjct: 83 VTVAAELDRRGLLRRIGGAPYLHTLISTVPTAANAGYYAGIVAEKALLRRLVEAGTRVVQ 142
Query: 133 QAFI-SRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTND 191
+ + G +V +++D A+++I+ +AE + N + ++ LL + ++ + +N
Sbjct: 143 YGYAGAEGADVAEVVDRAQAEIYDVAECRLSEN--YVPLEDLLQPTMDDLDAI---ASNG 197
Query: 192 NDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251
G TGF ELD++T+GL PG +IIVA RP +GK +A++ LP
Sbjct: 198 GISRGAPTGFTELDEVTNGLHPGQMIIVAARPGVGKA---------LALDTPLPTPTGWT 248
Query: 252 EMSGIQLAMRMLG 264
M + + +L
Sbjct: 249 AMGDVAVGDELLA 261
>sp|Q46259|GP1D_CHLPS Probable plasmid replicative DNA helicase OS=Chlamydophila psittaci
PE=3 SV=1
Length = 458
Score = 189 bits (479), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 101/256 (39%), Positives = 160/256 (62%), Gaps = 2/256 (0%)
Query: 194 VTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEM 253
V G+ TG+ +D+ + L G+ +++A RP+MGKTAF+++I ++ +E V S+EM
Sbjct: 198 VDGLPTGYSSIDEHSIILSRGNFVVIAARPAMGKTAFAIDIALNLVLEQGKAVGFISLEM 257
Query: 254 SGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELR 313
S Q+ R++ ++ + +L+ G S D +I K+ + +I + S ++ L
Sbjct: 258 SPNQIVERIISNLSETSCEQLKRGNFSRDVLSKIESIGTKLKGTHFFICDNKSTDLNTLI 317
Query: 314 ANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQ 373
+R L G I + IDYLQL+ ++ + ENR EI+EISR L+ LA E+ P++ LSQ
Sbjct: 318 DQARELRENQG-IDALFIDYLQLIGSSKKAENRQNEIAEISRQLRKLAVELQIPVVCLSQ 376
Query: 374 LNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQRNG 433
L+R +E R +KRP++SDLR+SG IEQDADVILF++R + Y+Q A KG++EIIV K R+G
Sbjct: 377 LSRKVEDRGDKRPMLSDLRDSGQIEQDADVILFLHRKDYYSQ-EATKGLSEIIVGKNRHG 435
Query: 434 PIGNIRLTFSGQYTKF 449
+ + L F+ KF
Sbjct: 436 SVFSTTLRFNSCTGKF 451
>sp|P0CE16|GP1D_CHLTH Probable plasmid replicative DNA helicase OS=Chlamydia trachomatis
PE=3 SV=1
Length = 451
Score = 182 bits (462), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 121/315 (38%), Positives = 185/315 (58%), Gaps = 17/315 (5%)
Query: 140 KEVKQILDEAESKIFSI-AEKEICINKGFQQIQ-PLLNRVIKRINKLHNRGTNDNDVTGI 197
+ +K LD A +K FSI + + I F Q + +L R+ KR + D
Sbjct: 144 ERIKGRLDSAIAKTFSIRSARGRSIYDIFSQSEIGVLARIKKRRATFSENQNSFFD--AF 201
Query: 198 STGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQ 257
TG+ ++D L G+ +I+A RPS+GKTA ++++ ++A+ + V S+EMS Q
Sbjct: 202 PTGYKDIDDKGVILAKGNFVIIAARPSIGKTALAIDMAINLAVTQQRRVGFLSLEMSAGQ 261
Query: 258 LAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYI--DETPSLNVIELRAN 315
+ R++ ++ + KL+ G LS ++ R+ ++ + + +S YI D LN+I AN
Sbjct: 262 IVERIIANLTGISGEKLQRGDLSKEELFRVEEAGETVRESHFYICSDSQYKLNLI---AN 318
Query: 316 SRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLN 375
RL R+ ++ VI IDYLQL+++ S GENR EI++ISR L+GLA E+N PI+ LSQL+
Sbjct: 319 QIRLLRKEDRVDVIFIDYLQLINS-SVGENRQNEIADISRTLRGLASELNIPIVCLSQLS 377
Query: 376 RSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQRNGPI 435
R +E R NK P++SDLR+SG IEQDADVILFI R E + EI V K R+G +
Sbjct: 378 RKVEDRANKVPMLSDLRDSGQIEQDADVILFINRKESSSN-------CEITVGKNRHGSV 430
Query: 436 GNIRLTFSGQYTKFN 450
+ L F + +KF+
Sbjct: 431 FSSVLHFDPKISKFS 445
>sp|B0BCM3|GP1D_CHLT2 Probable plasmid replicative DNA helicase OS=Chlamydia trachomatis
serovar L2 (strain 434/Bu / ATCC VR-902B) GN=pL2-03 PE=3
SV=1
Length = 451
Score = 182 bits (462), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 121/315 (38%), Positives = 185/315 (58%), Gaps = 17/315 (5%)
Query: 140 KEVKQILDEAESKIFSI-AEKEICINKGFQQIQ-PLLNRVIKRINKLHNRGTNDNDVTGI 197
+ +K LD A +K FSI + + I F Q + +L R+ KR + D
Sbjct: 144 ERIKGRLDSAIAKTFSIRSARGRSIYDIFSQSEIGVLARIKKRRATFSENQNSFFD--AF 201
Query: 198 STGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGIQ 257
TG+ ++D L G+ +I+A RPS+GKTA ++++ ++A+ + V S+EMS Q
Sbjct: 202 PTGYKDIDDKGVILAKGNFVIIAARPSIGKTALAIDMAINLAVTQQRRVGFLSLEMSAGQ 261
Query: 258 LAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYI--DETPSLNVIELRAN 315
+ R++ ++ + KL+ G LS ++ R+ ++ + + +S YI D LN+I AN
Sbjct: 262 IVERIIANLTGISGEKLQRGDLSKEELFRVEEAGETVRESHFYICSDSQYKLNLI---AN 318
Query: 316 SRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLN 375
RL R+ ++ VI IDYLQL+++ S GENR EI++ISR L+GLA E+N PI+ LSQL+
Sbjct: 319 QIRLLRKEDRVDVIFIDYLQLINS-SVGENRQNEIADISRTLRGLASELNIPIVCLSQLS 377
Query: 376 RSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQRNGPI 435
R +E R NK P++SDLR+SG IEQDADVILFI R E + EI V K R+G +
Sbjct: 378 RKVEDRANKVPMLSDLRDSGQIEQDADVILFINRKESSSN-------CEITVGKNRHGSV 430
Query: 436 GNIRLTFSGQYTKFN 450
+ L F + +KF+
Sbjct: 431 FSSVLHFDPKISKFS 445
>sp|P47340|DNAB_MYCGE Replicative DNA helicase OS=Mycoplasma genitalium (strain ATCC
33530 / G-37 / NCTC 10195) GN=dnaB PE=3 SV=2
Length = 468
Score = 174 bits (441), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 124/375 (33%), Positives = 203/375 (54%), Gaps = 51/375 (13%)
Query: 102 PSAANIRRYAEIVRDRGILRKLITVTDEISSQAFISRGKEVK-----------QILDEAE 150
P+ I+ ++V+ I R+L + ++ F + + +I+ A
Sbjct: 105 PNQTEIKTLVDVVKKASIFRRLQQFAKRVYNEEFKLKEDRFEGYLQAIQDDFVKIIHSAF 164
Query: 151 SKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTNDNDVTGISTGFFELDKITSG 210
S IF+ + EI N+ I K+H RG + ++G+S+GF +LD++TSG
Sbjct: 165 SNIFAFSYDEIA------------NQEEALIKKVH-RG--ELIISGLSSGFLKLDQLTSG 209
Query: 211 LQPGDLIIVAGRPSMGKTAFSLNIGEHIA--IENKLPVAIF-SMEMSGIQLAMRMLGSVG 267
+PG+LI++A RP GKTA +N A I+ K V +F S+EM ++ R L
Sbjct: 210 WKPGELIVIAARPGRGKTALLINFMASAAKQIDPKTDVVLFFSLEMRNREIYQRHL---- 265
Query: 268 KLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETP-------SLNVIELRANSRRLS 320
H+ +T + + RIN+ +++ ++ I P SL + E+R +S
Sbjct: 266 ---MHESQTS-YTLTNRQRINNVFEELMEASSRIKNLPIKLFDYSSLTLQEIRNQITEVS 321
Query: 321 RQCGKIGVIIIDYLQLMSA--NSRGENRATEISEISRNLKGLAKEINCPILALSQLNRSL 378
+ + ++IIDYLQL++A N+ G R E++ IS++LK AKE N PI+A +QL+R +
Sbjct: 322 K-TSNVRLVIIDYLQLVNALKNNYGLTRQQEVTMISQSLKAFAKEFNTPIIAAAQLSRRI 380
Query: 379 EQRQNKRPIMSDLRESGAIEQDADVILFIYR--DEVYNQNSADKGI--AEIIVSKQRNGP 434
E+R++ RPI+SDLRESG+IEQDAD++LFI+R D+ Q + + E+I+ K RNGP
Sbjct: 381 EERKDSRPILSDLRESGSIEQDADMVLFIHRTNDDKKEQEEENTNLFEVELILEKNRNGP 440
Query: 435 IGNIRLTFSGQYTKF 449
G ++L F + F
Sbjct: 441 NGKVKLNFRSDTSSF 455
>sp|Q46437|GP1D_CHLMU Probable plasmid replicative DNA helicase OS=Chlamydia muridarum
(strain MoPn / Nigg) GN=TC_A03 PE=3 SV=1
Length = 451
Score = 171 bits (433), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 116/278 (41%), Positives = 168/278 (60%), Gaps = 15/278 (5%)
Query: 177 VIKRINKLHNRGTNDND--VTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNI 234
V+ RI K + +ND G+ TG+ ++D L G+ +I+A RPS+GKTA +++I
Sbjct: 179 VLARIKKRRAAYSENNDSFYDGLPTGYQDIDSKGVILANGNFVIIAARPSIGKTALAIDI 238
Query: 235 GEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKI 294
+IAI + V S+EMS Q+ R++ ++ + KL+ G LS ++ I ++ I
Sbjct: 239 AINIAIHQRRRVGFLSLEMSAGQIVERIISNLTGVSGEKLQRGSLSEEEIFCIEEAGNTI 298
Query: 295 NKSQLYI--DETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISE 352
S LYI D LN+I AN RL ++ ++ VI IDYLQL+++ S GENR EI++
Sbjct: 299 RDSHLYICSDNQYKLNLI---ANQIRLLKRDDRVDVIFIDYLQLINS-SVGENRQNEIAD 354
Query: 353 ISRNLKGLAKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEV 412
ISR L+GLA E+N PI+ LSQL+R +E R NK P++SDLR+SG IEQDADVILFI R E
Sbjct: 355 ISRTLRGLAAELNIPIVCLSQLSRKVEDRANKVPMLSDLRDSGQIEQDADVILFINRKET 414
Query: 413 YNQNSADKGIAEIIVSKQRNGPIGNIRLTFSGQYTKFN 450
EI V K R+G + + L F + +KF+
Sbjct: 415 SPN-------CEITVGKNRHGSVFSTVLQFDPKTSKFS 445
>sp|P75539|DNAB_MYCPN Replicative DNA helicase OS=Mycoplasma pneumoniae (strain ATCC
29342 / M129) GN=dnaB PE=3 SV=1
Length = 473
Score = 160 bits (405), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 120/394 (30%), Positives = 213/394 (54%), Gaps = 40/394 (10%)
Query: 80 SNTGNAEEIGGLSYLNSLAQNIPSAA-NIRRYAEIVRDRGILRKLITVTDEISSQAFISR 138
+++ EI GL + + L + +P +I+ + ++V+ I R+L ++ + F +
Sbjct: 85 TDSKTQREIEGL-FEDVLLKGLPFLERDIKVFVDVVKKASIFRQLKQFAKKVEKEEFKVK 143
Query: 139 GKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKR-----INKLHNRGTNDND 193
+ L ++ I I+ F I L I R I K++ RG +
Sbjct: 144 DDRFEGYLQAIQNDFTKI------IHSAFVSIPGLSYDEIVREEEELIPKVY-RG--ELT 194
Query: 194 VTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE------NKLPVA 247
V G+ +GF+ LD++TSG + G+LI+VA RP GKTA +N + + NK +
Sbjct: 195 VKGLKSGFYPLDQLTSGWKEGELIVVAARPGRGKTALLINFLQGAVNDSEKFDKNKDVLL 254
Query: 248 IFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSS--DDWPRINDSIKKINKSQLYIDETP 305
FS+EM ++ R L +++ RL++ DD + ++ ++ + + I +
Sbjct: 255 FFSLEMRNREIYQRHLMLESQVNYTLTSRQRLANVYDDLIKASEVLRDL---PIKIFDYS 311
Query: 306 SLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSA--NSRGENRATEISEISRNLKGLAKE 363
++ + E+RA +S+ + +++IDYLQL++A NS +R E++ IS++LK AKE
Sbjct: 312 TITLDEIRAQITEVSK-TNNVKLVVIDYLQLVNAFKNSYNISRQQEVTMISKSLKSFAKE 370
Query: 364 INCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGI- 422
N PI+A +QL+R +E+R++ RPI+SDLRESG+IEQDAD++LFI+R V +++S ++
Sbjct: 371 FNVPIIAAAQLSRRIEERKDSRPILSDLRESGSIEQDADMVLFIHR--VKDEDSENQEAI 428
Query: 423 -------AEIIVSKQRNGPIGNIRLTFSGQYTKF 449
E+I+ K R+GP G ++ F + F
Sbjct: 429 GHNNIFQVELILEKNRSGPTGKVQFDFQSDVSTF 462
>sp|O66827|RADA_AQUAE DNA repair protein RadA homolog OS=Aquifex aeolicus (strain VF5)
GN=radA PE=3 SV=1
Length = 444
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 77/187 (41%), Gaps = 49/187 (26%)
Query: 198 STGFFELD-KITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGI 256
+TGF LD + GL G +I++AG P +GK+ L I + +A N V S E SG
Sbjct: 67 TTGFESLDNALGGGLVKGQVILIAGEPGIGKSTLLLQISDRVA--NGKKVLYVSGEESGT 124
Query: 257 QLAMRMLGSVGKLDQHKLRTGRLSSDD-----WPRINDSIKKINKSQLYIDETPSLNVIE 311
Q+A LR RL ++ +P +N ++KI Q E PSL V++
Sbjct: 125 QIA--------------LRAKRLGINNENLLVYPEVN--LEKI--LQTLEKEKPSLLVLD 166
Query: 312 LRAN--SRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPIL 369
S RL G + +++ E++ + KE N P
Sbjct: 167 SVQTIFSERLESSAGSV---------------------SQVREVTYRITEFCKEKNVPAF 205
Query: 370 ALSQLNR 376
+ Q+ +
Sbjct: 206 IVGQITK 212
>sp|P74391|RADA_SYNY3 DNA repair protein RadA homolog OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=radA PE=3 SV=1
Length = 505
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 199 TGFFELDKITSG-LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIF-SMEMSGI 256
+G+ ELD++ G + PG LI++ G P +GK+ L + +A +LP ++ S E SG
Sbjct: 84 SGYGELDRVLGGGIVPGALILIGGDPGIGKSTLLLQVAFQLA--TRLPRILYVSAEESGQ 141
Query: 257 QLAMR 261
Q+ +R
Sbjct: 142 QIKLR 146
>sp|O55230|RA51D_MOUSE DNA repair protein RAD51 homolog 4 OS=Mus musculus GN=Rad51d PE=2
SV=1
Length = 329
Score = 39.7 bits (91), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 53/258 (20%), Positives = 121/258 (46%), Gaps = 28/258 (10%)
Query: 138 RGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTN-----DN 192
RG+++K + D A + + +A+K ++ + L ++ + + G +
Sbjct: 21 RGRKIKTVADLAAADLEEVAQK---CGLSYKALVALRRVLLAQFSAFPLNGADLYEELKT 77
Query: 193 DVTGISTGFFELDKIT-SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251
+STG LDK+ +GL G++ + G P GKT L + ++A + L + +
Sbjct: 78 STAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCVAANVA--HSLQQNVLYV 135
Query: 252 EMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIE 311
+ +G A R+L +L Q + + D + ++++I + + D L++++
Sbjct: 136 DSNGGMTASRLL----QLLQAR-------TQDEEKQASALQRIQVVRSF-DIFRMLDMLQ 183
Query: 312 -LRAN-SRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEIS---EISRNLKGLAKEINC 366
LR +++ + G + V+I+D + + A G + ++ +++R LK LA+++
Sbjct: 184 DLRGTIAQQEATSSGAVKVVIVDSVTAVVAPLLGGQQREGLALMMQLARELKILARDLGV 243
Query: 367 PILALSQLNRSLEQRQNK 384
++ + L R + R+ K
Sbjct: 244 AVVVTNHLTRDWDGRRFK 261
>sp|P20315|PRIM_BPT3 DNA primase/helicase OS=Enterobacteria phage T3 GN=4 PE=3 SV=1
Length = 566
Score = 39.3 bits (90), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 104/241 (43%), Gaps = 32/241 (13%)
Query: 189 TNDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAF----SLNIGEHIAIENKL 244
T+++ V + G L+ T G + G++++V MGK+ F +L G+ + L
Sbjct: 279 TSEDAVGLLFDGCQGLNDRTLGARGGEVVMVTSGSGMGKSTFVRQQALAWGKRMGKRVGL 338
Query: 245 PVAIFSME-----MSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQL 299
+ S+E M G+ +R+ S ++ + GR D+W +L
Sbjct: 339 AMLEESVEDTIQDMMGLNNKVRLRQS-DEVKKAIAEDGRF--DEW-----------YDEL 384
Query: 300 YIDETPSLNVIELRANSRRL------SRQCGKIGVIIIDYLQLMSANSRGENRATEISEI 353
+ D+T L A + RL R VI++D++ ++ + S + I +
Sbjct: 385 FGDDTFHLYDSFAEAEADRLLAKLAYMRTGLGCDVIVLDHISIVVSASEESDERKMIDRL 444
Query: 354 SRNLKGLAKEINCPILALSQL---NRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRD 410
LKG AK ++ + L + + + ++DLR SGA+ Q +D I+ + R+
Sbjct: 445 MTKLKGFAKSTGVVLVVICHLKNPEKGKAHEEGRAVSITDLRGSGALRQLSDTIIALERN 504
Query: 411 E 411
+
Sbjct: 505 Q 505
>sp|P03692|PRIM_BPT7 DNA primase/helicase OS=Enterobacteria phage T7 GN=4 PE=1 SV=1
Length = 566
Score = 39.3 bits (90), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 106/235 (45%), Gaps = 40/235 (17%)
Query: 199 TGFFELDKITSGLQPGDLIIVAGRPSMGKTAF----SLNIGEHIAIENKLPVAIFSMEMS 254
+G ++ T G + G++I+V MGK+ F +L G A+ K+ +A+ +E S
Sbjct: 290 SGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG--TAMGKKVGLAM--LEES 345
Query: 255 GIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKI----NKSQLYIDETPSLNVI 310
+ A ++G ++ RL R +DS+K+ K + DE +
Sbjct: 346 VEETAEDLIGLHNRV--------RL------RQSDSLKREIIENGKFDQWFDELFGNDTF 391
Query: 311 EL-----RANSRRL------SRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKG 359
L A + RL R VII+D++ ++ + S + I + LKG
Sbjct: 392 HLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKG 451
Query: 360 LAKEINCPILALSQLNRSLEQRQNK--RPI-MSDLRESGAIEQDADVILFIYRDE 411
AK ++ + L + + ++ RP+ ++DLR SGA+ Q +D I+ + R++
Sbjct: 452 FAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQ 506
>sp|P56148|RADA_HELPY DNA repair protein RadA homolog OS=Helicobacter pylori (strain ATCC
700392 / 26695) GN=radA PE=3 SV=2
Length = 448
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 6/130 (4%)
Query: 193 DVTGISTGFFELDKITSG-LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251
+V S+ ELD + G + G L +V G P +GK+ L + +A +N+ V S
Sbjct: 67 EVIKFSSTQSELDIVLGGGIAKGGLYLVGGSPGVGKSTLLLKVASGLA-KNQQKVLYVSG 125
Query: 252 EMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIE 311
E S Q+ MR + +LD + L+ +WP I +I+ N ID +L E
Sbjct: 126 EESLSQIKMRAI----RLDCIEKELYLLNEINWPVIKANIESENYFACVIDSIQTLYSPE 181
Query: 312 LRANSRRLSR 321
+ + +S+
Sbjct: 182 ISSAPGSISQ 191
>sp|Q00042|TNPX_ECOLI Putative transposon gamma-delta 80.3 kDa protein OS=Escherichia
coli (strain K12) GN=tnpX PE=4 SV=1
Length = 698
Score = 37.4 bits (85), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 189 TNDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAI 248
T +ND +S F E + ++ D IV GR GK+A + + EH + K+ +
Sbjct: 16 TAENDKKMLSNAFIETADFRTLIETDDRTIVVGRRGTGKSALFIQLNEHWKKDKKILILS 75
Query: 249 FSMEMSGI 256
FS + S I
Sbjct: 76 FSPDDSQI 83
>sp|P45266|RADA_HAEIN DNA repair protein RadA homolog OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=radA PE=3 SV=1
Length = 458
Score = 36.2 bits (82), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 197 ISTGFFELDKITSG-LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSG 255
S+GF ELD++ G + PG I++ G P GK+ L + + + + E S
Sbjct: 75 FSSGFSELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQV--MCGLAKNMTALYVTGEESL 132
Query: 256 IQLAMR 261
Q+AMR
Sbjct: 133 QQVAMR 138
>sp|O70489|PPT2_RAT Lysosomal thioesterase PPT2 OS=Rattus norvegicus GN=Ppt2 PE=2 SV=1
Length = 302
Score = 36.2 bits (82), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 51 YDHRLIFKHIIKLINSSHPADVITVFDSLSNTGN----AEEIGGL-SYLNSLAQNIPSAA 105
+D F+H++ IN +HP V+TV D + E++ G + + + P
Sbjct: 46 FDSSYSFRHLLDYINETHPGTVVTVLDLFDGRESLRPLWEQVQGFREAVVPIMEKAPEGV 105
Query: 106 NIRRYAEIVRDRGILRKLITVTDEISSQAFIS 137
++ Y++ + R L++V DE + +FIS
Sbjct: 106 HLICYSQ---GGLVCRALLSVMDEHNVDSFIS 134
>sp|Q9ZMK9|RADA_HELPJ DNA repair protein RadA homolog OS=Helicobacter pylori (strain J99)
GN=radA PE=3 SV=1
Length = 448
Score = 36.2 bits (82), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 6/130 (4%)
Query: 193 DVTGISTGFFELDKITSG-LQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251
+V S+ ELD + G + G L +V G P +GK+ L + +A +N+ V S
Sbjct: 67 EVIKFSSTQSELDIVLGGGIAKGGLYLVGGSPGVGKSTLLLKVASGLA-KNQQKVLYVSG 125
Query: 252 EMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIE 311
E S Q+ MR +LD + L+ +WP I +++ N ID +L E
Sbjct: 126 EESLSQIKMR----ATRLDCIEEELYLLNEINWPVIKANMESENYFACVIDSIQTLYSPE 181
Query: 312 LRANSRRLSR 321
+ + +S+
Sbjct: 182 ISSAPGSISQ 191
>sp|P83571|RUVB2_DANRE RuvB-like 2 OS=Danio rerio GN=ruvbl2 PE=1 SV=1
Length = 463
Score = 35.4 bits (80), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 204 LDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPV----AIFSMEMS 254
L+ I G G +++AG+P GKTA ++ I + + + IFS+EMS
Sbjct: 60 LEMIKDGQIAGRAVLIAGQPGTGKTAIAMGIAQSLGPDTPFTALAGSEIFSLEMS 114
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 156,455,779
Number of Sequences: 539616
Number of extensions: 6473005
Number of successful extensions: 21032
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 20856
Number of HSP's gapped (non-prelim): 130
length of query: 452
length of database: 191,569,459
effective HSP length: 121
effective length of query: 331
effective length of database: 126,275,923
effective search space: 41797330513
effective search space used: 41797330513
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)