Your job contains 1 sequence.
>psy2892
MLVPFNTENKKFRVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHI
IKLINSSHPADVITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGIL
RKLITVTDEISSQAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKR
INKLHNRGTNDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAI
ENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLY
IDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGL
AKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADK
GIAEIIVSKQRNGPIGNIRLTFSGQYTKFNNF
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy2892
(452 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TIGR_CMR|CBU_0868 - symbol:CBU_0868 "replicative DNA heli... 1029 3.4e-126 2
TIGR_CMR|SO_3917 - symbol:SO_3917 "replicative DNA helica... 1190 5.8e-121 1
UNIPROTKB|P0ACB0 - symbol:dnaB "DnaB" species:83333 "Esch... 1168 1.3e-118 1
UNIPROTKB|Q9KUY7 - symbol:VC_0371 "Replicative DNA helica... 1157 1.8e-117 1
TIGR_CMR|VC_0371 - symbol:VC_0371 "replicative DNA helica... 1157 1.8e-117 1
TIGR_CMR|GSU_0998 - symbol:GSU_0998 "replicative DNA heli... 1092 1.4e-110 1
UNIPROTKB|Q9X4C9 - symbol:dnaB "Replicative helicase" spe... 1061 2.7e-107 1
UNIPROTKB|P37469 - symbol:dnaC "Replicative DNA helicase"... 1043 2.2e-105 1
TIGR_CMR|BA_5717 - symbol:BA_5717 "replicative DNA helica... 1038 7.5e-105 1
TIGR_CMR|CHY_0041 - symbol:CHY_0041 "replicative DNA heli... 994 3.4e-100 1
UNIPROTKB|P71715 - symbol:dnaB "Replicative DNA helicase"... 742 4.5e-82 2
TIGR_CMR|DET_0540 - symbol:DET_0540 "replicative DNA heli... 746 6.5e-74 1
TIGR_CMR|ECH_0451 - symbol:ECH_0451 "replicative DNA heli... 652 3.7e-72 2
UNIPROTKB|O83097 - symbol:dnaB "Replicative DNA helicase"... 719 4.8e-71 1
TIGR_CMR|SPO_2655 - symbol:SPO_2655 "replicative DNA heli... 710 4.3e-70 1
TIGR_CMR|APH_0323 - symbol:APH_0323 "replicative DNA heli... 629 9.8e-70 2
TIGR_CMR|NSE_0553 - symbol:NSE_0553 "replicative DNA heli... 635 2.9e-68 2
TIGR_CMR|BA_0934 - symbol:BA_0934 "replicative DNA helica... 691 4.4e-68 1
TIGR_CMR|CJE_0667 - symbol:CJE_0667 "replicative DNA heli... 624 1.8e-66 2
UNIPROTKB|Q2HJ51 - symbol:RAD51D "DNA repair protein RAD5... 122 0.00012 1
MGI|MGI:1261809 - symbol:Rad51d "RAD51 homolog D" species... 118 0.00034 1
TAIR|locus:2204584 - symbol:AT1G30680 species:3702 "Arabi... 120 0.00067 1
>TIGR_CMR|CBU_0868 [details] [associations]
symbol:CBU_0868 "replicative DNA helicase,
intein-containing" species:227377 "Coxiella burnetii RSA 493"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] InterPro:IPR003593
InterPro:IPR006141 InterPro:IPR007692 InterPro:IPR007693
InterPro:IPR007694 Pfam:PF00772 Pfam:PF03796 PROSITE:PS50817
PROSITE:PS50818 PROSITE:PS51199 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0003678 GO:GO:0032508 InterPro:IPR003586 InterPro:IPR003587
SMART:SM00305 SMART:SM00306 GO:GO:0016539 HOGENOM:HOG000113196
KO:K02314 Gene3D:1.10.860.10 InterPro:IPR016136 SUPFAM:SSF48024
TIGRFAMs:TIGR00665 TIGRFAMs:TIGR01443 TIGRFAMs:TIGR01445
HSSP:P03005 RefSeq:NP_819887.1 ProteinModelPortal:Q83D72 SMR:Q83D72
PRIDE:Q83D72 GeneID:1208761 KEGG:cbu:CBU_0868 PATRIC:17930433
OMA:VEERSVF ProtClustDB:CLSK914374
BioCyc:CBUR227377:GJ7S-862-MONOMER Uniprot:Q83D72
Length = 610
Score = 1029 (367.3 bits), Expect = 3.4e-126, Sum P(2) = 3.4e-126
Identities = 204/381 (53%), Positives = 278/381 (72%)
Query: 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADV 72
+VPPHS E+EQSVLG L+LDN AWD+IAD ++ FYR DH+LIF+ + +L++ P DV
Sbjct: 13 KVPPHSQEAEQSVLGALMLDNRAWDRIADRISIQDFYRSDHQLIFETMSRLVDQHKPLDV 72
Query: 73 ITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISS 132
+T+ ++L GG YL LA+N PSAANI YA+IVR+R ILR+LI +I+
Sbjct: 73 LTIAEALKAREQLSAAGGEPYLYELAKNTPSAANIVAYADIVRERAILRQLIEAGTDITH 132
Query: 133 QAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTNDN 192
F G+++K++LD AE ++F IAE + G I PLL + RI+KL + +
Sbjct: 133 DGFNPDGRDIKELLDTAEQRVFHIAESRVR-GSGPIAIGPLLTKATDRIDKLFH---SKQ 188
Query: 193 DVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252
+TG+S+GF +LDK+TSGLQ GDLI+VAGRPSMGKT F++NI E AI+ +PV +FSME
Sbjct: 189 AITGLSSGFTDLDKLTSGLQDGDLIVVAGRPSMGKTVFAINIAEVAAIKGNIPVLVFSME 248
Query: 253 MSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIEL 312
M L MRML S+G +DQHK+RTG+L DDWPRI +I+ +++++L+ID+TP+L E+
Sbjct: 249 MPAESLVMRMLSSLGSIDQHKVRTGQLKDDDWPRITHAIEMLSETKLFIDDTPALTPSEI 308
Query: 313 RANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALS 372
R+ +RRL+R+ G +G+I+IDYLQLM ENR+TEISEISR+LK LAKE+N P++ALS
Sbjct: 309 RSRARRLAREHGGLGLIVIDYLQLMHVPGTKENRSTEISEISRSLKALAKELNVPVVALS 368
Query: 373 QLNRSLEQRQNKRPIMSDLRE 393
QLNRSLE R +KRP+MSDLRE
Sbjct: 369 QLNRSLEARVDKRPVMSDLRE 389
Score = 231 (86.4 bits), Expect = 3.4e-126, Sum P(2) = 3.4e-126
Identities = 43/59 (72%), Positives = 52/59 (88%)
Query: 394 SGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452
SGAIEQDAD+I FIYRDEVY+++S DKG AEII++K RNGPIG + LTF GQYT+F+NF
Sbjct: 536 SGAIEQDADLIAFIYRDEVYHEDSPDKGKAEIIIAKHRNGPIGKVILTFRGQYTRFDNF 594
>TIGR_CMR|SO_3917 [details] [associations]
symbol:SO_3917 "replicative DNA helicase" species:211586
"Shewanella oneidensis MR-1" [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] InterPro:IPR003593 InterPro:IPR007692
InterPro:IPR007693 InterPro:IPR007694 Pfam:PF00772 Pfam:PF03796
PROSITE:PS51199 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003678
GO:GO:0032508 HOGENOM:HOG000113196 KO:K02314 OMA:YRTALML
Gene3D:1.10.860.10 InterPro:IPR016136 SUPFAM:SSF48024
TIGRFAMs:TIGR00665 HSSP:P03005 RefSeq:NP_719448.1
ProteinModelPortal:Q8EAI5 GeneID:1171557 KEGG:son:SO_3917
PATRIC:23527514 ProtClustDB:CLSK907407 Uniprot:Q8EAI5
Length = 468
Score = 1190 (424.0 bits), Expect = 5.8e-121, P = 5.8e-121
Identities = 227/450 (50%), Positives = 324/450 (72%)
Query: 4 PFNTENKKFRVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKL 63
P + + ++PPHSIE+EQSVLGGL+LD AWDK+A+ + + FY HR+IF + +L
Sbjct: 13 PRDLQVDSLKLPPHSIEAEQSVLGGLMLDADAWDKVAETVVKEDFYSRSHRMIFAAMHRL 72
Query: 64 INSSHPADVITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKL 123
+ + P D+ITV + L EE GG +YL +A+N PSA NI YAEIVR+R ++R++
Sbjct: 73 VETGQPIDLITVSEQLELENQLEEAGGFAYLGEIAKNTPSAGNIVSYAEIVRERAVVREM 132
Query: 124 ITVTDEISSQAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINK 183
I V EI+ + G++ +LD AESK+F IAE+ N+G + I+ +L + + +I +
Sbjct: 133 IRVAHEIADAGYNPEGRDSSALLDLAESKVFKIAEQRTNANEGPEGIKTILEKTVDKIEQ 192
Query: 184 LHNRGTNDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENK 243
L+N N VTG+S+GF +LDK+T+G Q GDLIIVA RPSMGKT F++N+ E A+
Sbjct: 193 LYNNP--HNGVTGVSSGFSDLDKMTAGFQSGDLIIVAARPSMGKTTFAMNLCEQAAMNED 250
Query: 244 LPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIK-KINKSQLYID 302
PV IFS+EM Q+ MRML S+G++DQ K+RTG+L +DW R++ ++ + + ++YID
Sbjct: 251 KPVLIFSLEMPSEQIMMRMLASLGRVDQTKIRTGQLDDEDWARVSSTMGIMLEQGKMYID 310
Query: 303 ETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAK 362
+ L E+R+ +RR++R+ G + +I++DYLQLM + +NR EI+EISR+LK LAK
Sbjct: 311 DGSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMQVPALSDNRTLEIAEISRSLKALAK 370
Query: 363 EINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGI 422
E+ P++ALSQLNRSLEQR +KRP+ SDLRESG+IEQDAD+I+FIYRDEVYN +S DKG
Sbjct: 371 ELEIPVIALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYNNDSPDKGT 430
Query: 423 AEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452
AEII+ KQRNGPIG +RLTF GQ+++F+N+
Sbjct: 431 AEIIIGKQRNGPIGRVRLTFQGQFSRFDNY 460
>UNIPROTKB|P0ACB0 [details] [associations]
symbol:dnaB "DnaB" species:83333 "Escherichia coli K-12"
[GO:0005658 "alpha DNA polymerase:primase complex" evidence=IEA]
[GO:0006268 "DNA unwinding involved in replication" evidence=IDA]
[GO:0006269 "DNA replication, synthesis of RNA primer"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IDA] [GO:0003678 "DNA helicase activity"
evidence=IEA;IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR003593
InterPro:IPR007692 InterPro:IPR007693 InterPro:IPR007694
Pfam:PF00772 Pfam:PF03796 PROSITE:PS51199 SMART:SM00382
GO:GO:0005524 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 EMBL:U00006 EMBL:K01174
GO:GO:0003678 EMBL:L02312 PIR:C65213 RefSeq:NP_418476.1
RefSeq:YP_492195.1 PDB:1B79 PDB:1JWE PDBsum:1B79 PDBsum:1JWE
ProteinModelPortal:P0ACB0 SMR:P0ACB0 DIP:DIP-35913N IntAct:P0ACB0
MINT:MINT-584605 SWISS-2DPAGE:P0ACB0 PRIDE:P0ACB0
EnsemblBacteria:EBESCT00000002743 EnsemblBacteria:EBESCT00000016057
GeneID:12932658 GeneID:948555 KEGG:ecj:Y75_p3939 KEGG:eco:b4052
PATRIC:32123643 EchoBASE:EB0232 EcoGene:EG10236 eggNOG:COG0305
HOGENOM:HOG000113196 KO:K02314 OMA:YRTALML ProtClustDB:PRK08006
BioCyc:EcoCyc:EG10236-MONOMER BioCyc:ECOL316407:JW4012-MONOMER
BioCyc:MetaCyc:EG10236-MONOMER EvolutionaryTrace:P0ACB0
Genevestigator:P0ACB0 GO:GO:0030894 GO:GO:0006269 GO:GO:0006268
Gene3D:1.10.860.10 InterPro:IPR016136 SUPFAM:SSF48024
TIGRFAMs:TIGR00665 Uniprot:P0ACB0
Length = 471
Score = 1168 (416.2 bits), Expect = 1.3e-118, P = 1.3e-118
Identities = 229/441 (51%), Positives = 326/441 (73%)
Query: 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADV 72
+VPPHSIE+EQSVLGGL+LDN WD +A+ + +D FY HR IF + +L S P D+
Sbjct: 25 KVPPHSIEAEQSVLGGLMLDNERWDDVAERVVADDFYTRPHRHIFTEMARLQESGSPIDL 84
Query: 73 ITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISS 132
IT+ +SL G + +GG +YL L++N PSAANI YA+IVR+R ++R++I+V +EI+
Sbjct: 85 ITLAESLERQGQLDSVGGFAYLAELSKNTPSAANISAYADIVRERAVVREMISVANEIAE 144
Query: 133 QAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTNDN 192
F +G+ + +LD AES++F IAE ++G + I +L+ + RI +L + +D
Sbjct: 145 AGFDPQGRTSEDLLDLAESRVFKIAESRANKDEGPKNIADVLDATVARIEQLFQQ-PHDG 203
Query: 193 DVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252
VTG++TG+ +L+K T+GLQP DLIIVA RPSMGKT F++N+ E+ A+ PV IFS+E
Sbjct: 204 -VTGVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLVENAAMLQDKPVLIFSLE 262
Query: 253 MSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIK-KINKSQLYIDETPSLNVIE 311
M Q+ MR L S+ ++DQ K+RTG+L +DW RI+ ++ + K +YID++ L E
Sbjct: 263 MPSEQIMMRSLASLSRVDQTKIRTGQLDDEDWARISGTMGILLEKRNIYIDDSSGLTPTE 322
Query: 312 LRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILAL 371
+R+ +RR++R+ G IG+I+IDYLQLM + +NR EI+EISR+LK LAKE+N P++AL
Sbjct: 323 VRSRARRIAREHGGIGLIMIDYLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPVVAL 382
Query: 372 SQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQR 431
SQLNRSLEQR +KRP+ SDLRESG+IEQDAD+I+FIYRDEVY++NS KGIAEII+ KQR
Sbjct: 383 SQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIIIGKQR 442
Query: 432 NGPIGNIRLTFSGQYTKFNNF 452
NGPIG +RLTF+GQ+++F+N+
Sbjct: 443 NGPIGTVRLTFNGQWSRFDNY 463
>UNIPROTKB|Q9KUY7 [details] [associations]
symbol:VC_0371 "Replicative DNA helicase" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0006270 "DNA replication initiation"
evidence=ISS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=ISS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISS] [GO:0032508 "DNA duplex unwinding"
evidence=ISS] InterPro:IPR003593 InterPro:IPR007692
InterPro:IPR007693 InterPro:IPR007694 Pfam:PF00772 Pfam:PF03796
PROSITE:PS51199 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006270 GO:GO:0003678
GO:GO:0008094 GO:GO:0006271 KO:K02314 OMA:YRTALML
Gene3D:1.10.860.10 InterPro:IPR016136 SUPFAM:SSF48024
TIGRFAMs:TIGR00665 HSSP:P03005 PIR:G82329 RefSeq:NP_230025.1
ProteinModelPortal:Q9KUY7 SMR:Q9KUY7 DNASU:2615050 GeneID:2615050
KEGG:vch:VC0371 PATRIC:20079813 ProtClustDB:PRK08840 Uniprot:Q9KUY7
Length = 468
Score = 1157 (412.3 bits), Expect = 1.8e-117, P = 1.8e-117
Identities = 224/441 (50%), Positives = 320/441 (72%)
Query: 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADV 72
+VPPHS+E+EQSV+GGLLLDN WD +++ + + FY HRLIF + ++ + P D+
Sbjct: 22 KVPPHSLEAEQSVIGGLLLDNERWDTVSEHVMTQDFYSRPHRLIFDGVKSILEAGKPLDL 81
Query: 73 ITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISS 132
IT+ + L E++GG +YL LA+N PSAANI YAEIV +R ++R LI V +EI+
Sbjct: 82 ITLSEYLEQREQLEDVGGFAYLADLAKNTPSAANINAYAEIVAERALVRNLIGVANEIAD 141
Query: 133 QAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTNDN 192
+ +G+ + +LD AESK+F+IAE N+G + + +L R ++RI L+ T +
Sbjct: 142 AGYDPQGRNAEDLLDLAESKVFAIAEARTSENEGPKNVDSILERTLERIELLYK--TPQD 199
Query: 193 DVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252
VTG++TGF +L+K T+GLQ DLIIVA RPSMGKT F++N+ E+ A+E PV IFS+E
Sbjct: 200 GVTGVNTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMEQDKPVLIFSLE 259
Query: 253 MSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKI-NKSQLYIDETPSLNVIE 311
M Q+ MRML S+ ++DQ K+RTG+L +DW RI+ ++ + K +YID++ L E
Sbjct: 260 MPAEQIMMRMLASLSRVDQTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTE 319
Query: 312 LRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILAL 371
+R+ +RR++R+ G + +I++DYLQLM + +NR EI+EISR+LK LAKE+N P++AL
Sbjct: 320 VRSRARRIAREHGGLSLIMVDYLQLMRVPALTDNRTLEIAEISRSLKALAKELNVPVVAL 379
Query: 372 SQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQR 431
SQLNRSLEQR +KRP+ SDLRESG+IEQDAD+I+FIYRDEVY+ +S KG AEII+ KQR
Sbjct: 380 SQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHPDSPLKGTAEIIIGKQR 439
Query: 432 NGPIGNIRLTFSGQYTKFNNF 452
NGPIG++RLTF G Y++F+N+
Sbjct: 440 NGPIGSVRLTFQGHYSRFDNY 460
>TIGR_CMR|VC_0371 [details] [associations]
symbol:VC_0371 "replicative DNA helicase" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003678 "DNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0006270 "DNA replication initiation" evidence=ISS] [GO:0006271
"DNA strand elongation involved in DNA replication" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
InterPro:IPR003593 InterPro:IPR007692 InterPro:IPR007693
InterPro:IPR007694 Pfam:PF00772 Pfam:PF03796 PROSITE:PS51199
SMART:SM00382 GO:GO:0005524 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006270 GO:GO:0003678 GO:GO:0008094
GO:GO:0006271 KO:K02314 OMA:YRTALML Gene3D:1.10.860.10
InterPro:IPR016136 SUPFAM:SSF48024 TIGRFAMs:TIGR00665 HSSP:P03005
PIR:G82329 RefSeq:NP_230025.1 ProteinModelPortal:Q9KUY7 SMR:Q9KUY7
DNASU:2615050 GeneID:2615050 KEGG:vch:VC0371 PATRIC:20079813
ProtClustDB:PRK08840 Uniprot:Q9KUY7
Length = 468
Score = 1157 (412.3 bits), Expect = 1.8e-117, P = 1.8e-117
Identities = 224/441 (50%), Positives = 320/441 (72%)
Query: 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADV 72
+VPPHS+E+EQSV+GGLLLDN WD +++ + + FY HRLIF + ++ + P D+
Sbjct: 22 KVPPHSLEAEQSVIGGLLLDNERWDTVSEHVMTQDFYSRPHRLIFDGVKSILEAGKPLDL 81
Query: 73 ITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISS 132
IT+ + L E++GG +YL LA+N PSAANI YAEIV +R ++R LI V +EI+
Sbjct: 82 ITLSEYLEQREQLEDVGGFAYLADLAKNTPSAANINAYAEIVAERALVRNLIGVANEIAD 141
Query: 133 QAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTNDN 192
+ +G+ + +LD AESK+F+IAE N+G + + +L R ++RI L+ T +
Sbjct: 142 AGYDPQGRNAEDLLDLAESKVFAIAEARTSENEGPKNVDSILERTLERIELLYK--TPQD 199
Query: 193 DVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252
VTG++TGF +L+K T+GLQ DLIIVA RPSMGKT F++N+ E+ A+E PV IFS+E
Sbjct: 200 GVTGVNTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMEQDKPVLIFSLE 259
Query: 253 MSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKI-NKSQLYIDETPSLNVIE 311
M Q+ MRML S+ ++DQ K+RTG+L +DW RI+ ++ + K +YID++ L E
Sbjct: 260 MPAEQIMMRMLASLSRVDQTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTE 319
Query: 312 LRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILAL 371
+R+ +RR++R+ G + +I++DYLQLM + +NR EI+EISR+LK LAKE+N P++AL
Sbjct: 320 VRSRARRIAREHGGLSLIMVDYLQLMRVPALTDNRTLEIAEISRSLKALAKELNVPVVAL 379
Query: 372 SQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQR 431
SQLNRSLEQR +KRP+ SDLRESG+IEQDAD+I+FIYRDEVY+ +S KG AEII+ KQR
Sbjct: 380 SQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHPDSPLKGTAEIIIGKQR 439
Query: 432 NGPIGNIRLTFSGQYTKFNNF 452
NGPIG++RLTF G Y++F+N+
Sbjct: 440 NGPIGSVRLTFQGHYSRFDNY 460
>TIGR_CMR|GSU_0998 [details] [associations]
symbol:GSU_0998 "replicative DNA helicase" species:243231
"Geobacter sulfurreducens PCA" [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] InterPro:IPR003593 InterPro:IPR007692
InterPro:IPR007693 InterPro:IPR007694 Pfam:PF00772 Pfam:PF03796
PROSITE:PS51199 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003678
GO:GO:0032508 KO:K02314 OMA:YRTALML Gene3D:1.10.860.10
InterPro:IPR016136 SUPFAM:SSF48024 TIGRFAMs:TIGR00665
HOGENOM:HOG000113195 RefSeq:NP_952052.1 HSSP:P03005
ProteinModelPortal:Q74EG4 SMR:Q74EG4 GeneID:2685644
KEGG:gsu:GSU0998 PATRIC:22024766 ProtClustDB:CLSK828127
BioCyc:GSUL243231:GH27-978-MONOMER Uniprot:Q74EG4
Length = 456
Score = 1092 (389.5 bits), Expect = 1.4e-110, P = 1.4e-110
Identities = 225/450 (50%), Positives = 313/450 (69%)
Query: 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADV 72
+VPP SIE+E S+LGG+LLDN A ++ + + +D FYR HR IF+ +I L N S P D+
Sbjct: 8 KVPPQSIEAEMSILGGVLLDNEAINRCLELIEADDFYRESHRKIFRAMIDLSNRSEPCDL 67
Query: 73 ITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISS 132
IT+ D L G EE+GG +YL +L +P+AANI Y IV+++ + R+LIT +I +
Sbjct: 68 ITLTDMLKRKGELEEVGGGAYLATLVDYVPTAANIAYYCRIVKEKSVTRRLITAATDIVT 127
Query: 133 QAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTNDN 192
+ + V ++LD A+ IF I+E ++ F + +L KRI L+ + +
Sbjct: 128 RGY-DEETTVDELLDGAQKTIFEISENKL--RPAFTPVGTILKDTFKRIETLYEKKEH-- 182
Query: 193 DVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAI--ENKLPVAIFS 250
VTG+ TGF++LDK+T+G QPGDLII+AGRPSMGKTAFSLNI ++ A + LPVA+FS
Sbjct: 183 -VTGVPTGFYDLDKMTAGFQPGDLIIIAGRPSMGKTAFSLNIAQYAAAHADPPLPVAVFS 241
Query: 251 MEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVI 310
+EMS L MR+L S ++D +LRTG L DW ++ K++K++LYID+TP++ V+
Sbjct: 242 LEMSKESLVMRLLCSESRVDASRLRTGHLVDTDWHKLTHGADKLSKARLYIDDTPAIPVL 301
Query: 311 ELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILA 370
E+RA +RRL + G +G+I++DYLQLM +S+ E+R EISEISR+LK LAKE++ P++A
Sbjct: 302 EMRAKARRLKAENG-LGMIVVDYLQLMRGSSQ-ESRQQEISEISRSLKALAKELDVPVVA 359
Query: 371 LSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVY------NQNSADKGI-- 422
LSQLNRSLE R +KRP+MSDLRESGAIEQDADVI+F+YRD VY S KG
Sbjct: 360 LSQLNRSLESRTDKRPMMSDLRESGAIEQDADVIMFVYRDAVYCDDCKKRDGSCTKGHEK 419
Query: 423 -AEIIVSKQRNGPIGNIRLTFSGQYTKFNN 451
AEII+ KQRNGPIG++ L F+G++TKF N
Sbjct: 420 DAEIIIGKQRNGPIGSVNLLFNGEFTKFEN 449
>UNIPROTKB|Q9X4C9 [details] [associations]
symbol:dnaB "Replicative helicase" species:1422
"Geobacillus stearothermophilus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0042802 "identical protein binding" evidence=IPI]
InterPro:IPR003593 InterPro:IPR007692 InterPro:IPR007693
InterPro:IPR007694 Pfam:PF00772 Pfam:PF03796 PROSITE:PS51199
SMART:SM00382 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0003678 GO:GO:0032508 Gene3D:1.10.860.10 InterPro:IPR016136
SUPFAM:SSF48024 TIGRFAMs:TIGR00665 PDB:2R6A PDB:2R6C PDBsum:2R6A
PDBsum:2R6C EMBL:AF106032 PDB:2R6D PDB:2R6E PDB:4ESV PDBsum:2R6D
PDBsum:2R6E PDBsum:4ESV ProteinModelPortal:Q9X4C9 SMR:Q9X4C9
DIP:DIP-48437N EvolutionaryTrace:Q9X4C9 Uniprot:Q9X4C9
Length = 454
Score = 1061 (378.5 bits), Expect = 2.7e-107, P = 2.7e-107
Identities = 208/440 (47%), Positives = 311/440 (70%)
Query: 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADV 72
R+PP SIE+EQ+VLG + LD A ++ L + FYR H+ IF ++++ + P D+
Sbjct: 8 RIPPQSIEAEQAVLGAVFLDPAALVPASEILIPEDFYRAAHQKIFHAMLRVADRGEPVDL 67
Query: 73 ITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISS 132
+TV L+ + EEIGG+SYL+ LA +P+AAN+ YA IV ++ +LR+LI I+
Sbjct: 68 VTVTAELAASEQLEEIGGVSYLSELADAVPTAANVEYYARIVEEKSVLRRLIRTATSIAQ 127
Query: 133 QAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTNDN 192
+ +R E+ +LDEA+ KI +++++ + F+ I+ +L + I LHNR D
Sbjct: 128 DGY-TREDEIDVLLDEADRKIMEVSQRKH--SGAFKNIKDILVQTYDNIEMLHNR---DG 181
Query: 193 DVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252
++TGI TGF ELD++TSG Q DLIIVA RPS+GKTAF+LNI +++A + VAIFS+E
Sbjct: 182 EITGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241
Query: 253 MSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIEL 312
MS QL MRML + G ++ LRTG+L+ +DW ++ ++ ++ + +YID+TPS+ V ++
Sbjct: 242 MSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDI 301
Query: 313 RANSRRLSRQCGKIGVIIIDYLQLMSANSRG-ENRATEISEISRNLKGLAKEINCPILAL 371
RA RRL ++ G +G+I+IDYLQL+ + R ENR E+SEISR+LK LA+E+ P++AL
Sbjct: 302 RAKCRRLKQESG-LGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIAL 360
Query: 372 SQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQR 431
SQL+RS+EQRQ+KRP+MSD+RESG+IEQDAD++ F+YRD+ YN++S +K I EII++KQR
Sbjct: 361 SQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYYNKDSENKNIIEIIIAKQR 420
Query: 432 NGPIGNIRLTFSGQYTKFNN 451
NGP+G ++L F +Y KF N
Sbjct: 421 NGPVGTVQLAFIKEYNKFVN 440
>UNIPROTKB|P37469 [details] [associations]
symbol:dnaC "Replicative DNA helicase" species:224308
"Bacillus subtilis subsp. subtilis str. 168" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR003593 InterPro:IPR007692
InterPro:IPR007693 InterPro:IPR007694 Pfam:PF00772 Pfam:PF03796
PROSITE:PS51199 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0003678 GO:GO:0032508
EMBL:D26185 eggNOG:COG0305 KO:K02314 GO:GO:0030894 GO:GO:0006269
Gene3D:1.10.860.10 InterPro:IPR016136 SUPFAM:SSF48024
TIGRFAMs:TIGR00665 HOGENOM:HOG000113195 EMBL:M83690 PIR:S65970
RefSeq:NP_391924.2 ProteinModelPortal:P37469 SMR:P37469
IntAct:P37469 EnsemblBacteria:EBBACT00000002275 GeneID:937810
KEGG:bsu:BSU40440 PATRIC:18980174 GenoList:BSU40440
ProtClustDB:PRK05748 BioCyc:BSUB:BSU40440-MONOMER Uniprot:P37469
Length = 454
Score = 1043 (372.2 bits), Expect = 2.2e-105, P = 2.2e-105
Identities = 205/440 (46%), Positives = 303/440 (68%)
Query: 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADV 72
R+PP +IE+EQ+VLG + L +A ++ L D FYR H+ I+ ++ L + P D+
Sbjct: 8 RLPPQNIEAEQAVLGAIFLQPSALTLASEVLIPDDFYRMSHQKIYNAMLVLGDRGEPVDL 67
Query: 73 ITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISS 132
+TV L+NT EE+GG+SYL +A ++P+AANI YA+IV ++ ILR+LI I+
Sbjct: 68 VTVTSELANTDLLEEVGGISYLTDIANSVPTAANIEYYAKIVEEKSILRRLIRTATTIAQ 127
Query: 133 QAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTNDN 192
+ +R EV+ +L EAE I +A+++ FQ I+ +L + I +LHNR
Sbjct: 128 DGY-TREDEVEDLLSEAEKTIMEVAQRKN--TSAFQNIKDVLVQTYDNIEQLHNR---KG 181
Query: 193 DVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252
D+TGI TGF ELD++T+G Q DLIIVA RPS+GKTAF+LNI +++A + VAIFS+E
Sbjct: 182 DITGIPTGFTELDRMTAGFQRNDLIIVAARPSVGKTAFALNIAQNVATKTDESVAIFSLE 241
Query: 253 MSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIEL 312
M QL MRML + G ++ LRTG L+ +DW ++ ++ ++ S +YID+TP + V E+
Sbjct: 242 MGAEQLVMRMLCAEGNINAQNLRTGNLTEEDWGKLTMAMGSLSNSGIYIDDTPGIRVSEI 301
Query: 313 RANSRRLSRQCGKIGVIIIDYLQLMSANSRG-ENRATEISEISRNLKGLAKEINCPILAL 371
RA RRL ++ G +G+I+IDYLQL+ + R +NR E+SEISR LK +A+E+ P++AL
Sbjct: 302 RAKCRRLKQESG-LGMILIDYLQLIQGSGRSKDNRQQEVSEISRELKSIARELQVPVIAL 360
Query: 372 SQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQR 431
SQL+R +EQRQ+KRP+MSD+RESG+IEQDAD++ F+YRD+ Y++ + +K I EII++KQR
Sbjct: 361 SQLSRGVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYYDKETENKNIIEIIIAKQR 420
Query: 432 NGPIGNIRLTFSGQYTKFNN 451
NGP+G + L F +Y KF N
Sbjct: 421 NGPVGTVSLAFVKEYNKFVN 440
>TIGR_CMR|BA_5717 [details] [associations]
symbol:BA_5717 "replicative DNA helicase" species:198094
"Bacillus anthracis str. Ames" [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] InterPro:IPR007692 InterPro:IPR007693
InterPro:IPR007694 Pfam:PF00772 Pfam:PF03796 PROSITE:PS51199
GO:GO:0005524 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006260 GO:GO:0003678
GO:GO:0032508 KO:K02314 OMA:YRTALML Gene3D:1.10.860.10
InterPro:IPR016136 SUPFAM:SSF48024 TIGRFAMs:TIGR00665
HOGENOM:HOG000113195 ProtClustDB:PRK05748 HSSP:P03005
RefSeq:NP_847863.1 RefSeq:YP_022403.1 RefSeq:YP_031558.1
ProteinModelPortal:Q81JI8 SMR:Q81JI8 IntAct:Q81JI8 DNASU:1085482
EnsemblBacteria:EBBACT00000013227 EnsemblBacteria:EBBACT00000018717
EnsemblBacteria:EBBACT00000022860 GeneID:1085482 GeneID:2816039
GeneID:2851125 KEGG:ban:BA_5717 KEGG:bar:GBAA_5717 KEGG:bat:BAS5321
BioCyc:BANT260799:GJAJ-5398-MONOMER
BioCyc:BANT261594:GJ7F-5574-MONOMER Uniprot:Q81JI8
Length = 453
Score = 1038 (370.5 bits), Expect = 7.5e-105, P = 7.5e-105
Identities = 204/440 (46%), Positives = 305/440 (69%)
Query: 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADV 72
R PPH+IE+EQ+VLG +L+D A ++ L D FYR H+ IF+ ++ L + P D+
Sbjct: 8 RTPPHNIEAEQAVLGAILIDQDALTSASELLVPDSFYRTKHQKIFEVMLGLSDKGEPIDL 67
Query: 73 ITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISS 132
+ + ++++ G EE+GG+SYL LA+ +P+AAN+ YA I+ ++ +LR+LI I S
Sbjct: 68 VMMTSAMADQGLLEEVGGVSYLAELAEVVPTAANVEYYARIIAEKALLRRLIRTATHIVS 127
Query: 133 QAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTNDN 192
+ R +V +L+EAE KI ++ + K FQ I+ +L +I LHN+
Sbjct: 128 DGY-EREDDVDGLLNEAEKKILEVSHQTNA--KAFQNIKDVLVDAYDKIELLHNQ---KG 181
Query: 193 DVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252
+VTGI TGF ELDK+T+G Q DLIIVA RPS+GKTAFSLNI +++A + VAIFS+E
Sbjct: 182 EVTGIPTGFTELDKMTAGFQRNDLIIVAARPSVGKTAFSLNIAQNVATKTDENVAIFSLE 241
Query: 253 MSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIEL 312
M QL MRML + G +D +LRTG L+SDDW ++ ++ ++ + +YID+TP + V E+
Sbjct: 242 MGADQLVMRMLCAEGNIDAQRLRTGSLTSDDWAKLTMAMGSLSNAGIYIDDTPGIKVNEI 301
Query: 313 RANSRRLSRQCGKIGVIIIDYLQLMSANSR-GENRATEISEISRNLKGLAKEINCPILAL 371
RA RRL ++ G +G+I+IDYLQL+ + + GENR E+SEISR LKG+A+E+ P++AL
Sbjct: 302 RAKCRRLKQEQG-LGMILIDYLQLIQGSGKSGENRQQEVSEISRTLKGIARELQVPVIAL 360
Query: 372 SQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQR 431
SQL+R +E RQ+KRP+MSD+RESG+IEQDAD++ F+YR++ Y++ + +K EII++KQR
Sbjct: 361 SQLSRGVESRQDKRPMMSDIRESGSIEQDADIVAFLYREDYYDRETENKNTIEIIIAKQR 420
Query: 432 NGPIGNIRLTFSGQYTKFNN 451
NGP+G++ L F ++ KF N
Sbjct: 421 NGPVGSVELAFVKEFNKFVN 440
>TIGR_CMR|CHY_0041 [details] [associations]
symbol:CHY_0041 "replicative DNA helicase" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] InterPro:IPR003593
InterPro:IPR007692 InterPro:IPR007693 InterPro:IPR007694
Pfam:PF00772 Pfam:PF03796 PROSITE:PS51199 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006260 GO:GO:0003678 GO:GO:0032508 eggNOG:COG0305 KO:K02314
OMA:YRTALML Gene3D:1.10.860.10 InterPro:IPR016136 SUPFAM:SSF48024
TIGRFAMs:TIGR00665 HOGENOM:HOG000113195 RefSeq:YP_358913.1
ProteinModelPortal:Q3AG21 SMR:Q3AG21 STRING:Q3AG21 GeneID:3728619
KEGG:chy:CHY_0041 PATRIC:21273279 BioCyc:CHYD246194:GJCN-41-MONOMER
Uniprot:Q3AG21
Length = 443
Score = 994 (355.0 bits), Expect = 3.4e-100, P = 3.4e-100
Identities = 200/445 (44%), Positives = 309/445 (69%)
Query: 9 NKKFRVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSH 68
N+ +PPH+I++EQ+VLG +L + + K+ + L + FYR H+L+++ +++L
Sbjct: 2 NELLMLPPHNIDAEQAVLGTILSNGESLYKVIEILKPEDFYRESHKLLYQVMLELNEKGE 61
Query: 69 PADVITVFDSLSNTGNAEEIGGLSYLNSL-AQNIPSAANIRRYAEIVRDRGILRKLITVT 127
P ++TV ++L G+ E GG+SY+ SL A +P A + +AEI+ ++ +LR LI ++
Sbjct: 62 PITILTVTEALKQKGDLERAGGVSYIASLLAMAVPEAT-LESHAEIIEEKAVLRHLIDLS 120
Query: 128 DEISSQAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLH-N 186
++I ++ K+ + IL+EAE + + K + + ++ ++ I+RI L+ N
Sbjct: 121 EKIKRLSYTE--KDAESILEEAERLVLEVGMKRN--QQSYTAVREIVYDAIERIEFLYQN 176
Query: 187 RGTNDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPV 246
RG ++TGI T F++LD++ +GLQ DLIIVA RP+MGKT+F LN+ ++ AI++ +PV
Sbjct: 177 RG----NITGIPTHFYDLDRMLNGLQKSDLIIVAARPAMGKTSFCLNVAQNAAIKSGVPV 232
Query: 247 AIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPS 306
A+FS+EMS QL RML S +DQH++R G LS +DW R+ + + K+ +YID+TP
Sbjct: 233 AVFSLEMSKEQLVTRMLTSEAMVDQHRVRAGELSDEDWLRLTEVAGILAKAPIYIDDTPG 292
Query: 307 LNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINC 366
L + ELRA +RRL ++ IG+IIIDYLQL++ + R E+R EISEISR LKGLAKE++
Sbjct: 293 LTIRELRARARRLKQE-KNIGLIIIDYLQLLNGSRRAESRQQEISEISRALKGLAKELDL 351
Query: 367 PILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEII 426
P++ALSQL+R++E RQ+KRPIMSDLRESG++EQDAD+++FIYR+E Y ++ K IAEII
Sbjct: 352 PVVALSQLSRAVEARQDKRPIMSDLRESGSLEQDADIVMFIYREEYYKPDTEKKSIAEII 411
Query: 427 VSKQRNGPIGNIRLTFSGQYTKFNN 451
++KQRNGP G + L F ++TKF N
Sbjct: 412 IAKQRNGPTGIVELGFLKEFTKFVN 436
>UNIPROTKB|P71715 [details] [associations]
symbol:dnaB "Replicative DNA helicase" species:1773
"Mycobacterium tuberculosis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005618 "cell wall" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEP] [GO:0040007 "growth" evidence=IMP]
InterPro:IPR003593 InterPro:IPR004042 InterPro:IPR006141
InterPro:IPR006142 InterPro:IPR007692 InterPro:IPR007693
InterPro:IPR007694 Pfam:PF00772 Pfam:PF03796 PRINTS:PR00379
PROSITE:PS50817 PROSITE:PS50818 PROSITE:PS50819 PROSITE:PS51199
SMART:SM00382 GO:GO:0005829 GO:GO:0005524 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 EMBL:BX842572 GO:GO:0006974
GO:GO:0090305 GO:GO:0004519 GO:GO:0006314 GO:GO:0003678
GO:GO:0032508 InterPro:IPR003586 InterPro:IPR003587 SMART:SM00305
SMART:SM00306 GO:GO:0016539 eggNOG:COG0305 KO:K02314 GO:GO:0030894
GO:GO:0006269 Gene3D:1.10.860.10 InterPro:IPR016136 SUPFAM:SSF48024
TIGRFAMs:TIGR00665 PIR:B70914 RefSeq:NP_214572.1 RefSeq:NP_334472.1
RefSeq:YP_006513372.1 PDB:2R5U PDBsum:2R5U
ProteinModelPortal:P71715 SMR:P71715 MEROPS:N10.002
EnsemblBacteria:EBMYCT00000001038 EnsemblBacteria:EBMYCT00000070820
GeneID:13316036 GeneID:887009 GeneID:922737 KEGG:mtc:MT0064
KEGG:mtu:Rv0058 KEGG:mtv:RVBD_0058 PATRIC:18121861
TubercuList:Rv0058 HOGENOM:HOG000113195 OMA:LPRHAIQ
ProtClustDB:PRK07773 ChEMBL:CHEMBL1741192 EvolutionaryTrace:P71715
TIGRFAMs:TIGR01443 TIGRFAMs:TIGR01445 Uniprot:P71715
Length = 874
Score = 742 (266.3 bits), Expect = 4.5e-82, Sum P(2) = 4.5e-82
Identities = 146/393 (37%), Positives = 247/393 (62%)
Query: 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADV 72
R PP + +EQSVLGG+LL A + + L FYR H+ ++ I+ L PAD
Sbjct: 22 RQPPQDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYDAILDLYGRGEPADA 81
Query: 73 ITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISS 132
+TV L G IGG YL++L +P+AAN YA IV ++ +LR+L+ +
Sbjct: 82 VTVAAELDRRGLLRRIGGAPYLHTLISTVPTAANAGYYASIVAEKALLRRLVEAGTRVVQ 141
Query: 133 QAFI-SRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTND 191
+ + G +V +++D A+++I+ +A++ + ++ F ++ LL + I+ + + G
Sbjct: 142 YGYAGAEGADVAEVVDRAQAEIYDVADRRL--SEDFVALEDLLQPTMDEIDAIASSG--- 196
Query: 192 NDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251
G++TGF ELD++T+GL PG ++IVA RP +GK+ L+ +I +++ IFS+
Sbjct: 197 GLARGVATGFTELDEVTNGLHPGQMVIVAARPGVGKSTLGLDFMRSCSIRHRMASVIFSL 256
Query: 252 EMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIE 311
EMS ++ MR+L + K+ +R+GR+S DDW R+ + +I+++ L+ID++P+L ++E
Sbjct: 257 EMSKSEIVMRLLSAEAKIKLSDMRSGRMSDDDWTRLARRMSEISEAPLFIDDSPNLTMME 316
Query: 312 LRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILAL 371
+RA +RRL RQ + +I++DYLQLM++ + E+R E+SE SR+LK LAKE+ P++A+
Sbjct: 317 IRAKARRL-RQKANLKLIVVDYLQLMTSGKKYESRQVEVSEFSRHLKLLAKELEVPVVAI 375
Query: 372 SQLNRSLEQRQNKRPIMSDLRESGAIEQDADVI 404
SQLNR EQR +K+P+++DLRESG + ++
Sbjct: 376 SQLNRGPEQRTDKKPMLADLRESGCLTASTRIL 408
Score = 100 (40.3 bits), Expect = 4.5e-82, Sum P(2) = 4.5e-82
Identities = 17/56 (30%), Positives = 35/56 (62%)
Query: 396 AIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQRNGPIGNIRLTFSGQYTKFNN 451
++EQDADV++ ++R + ++++ G A+ I++K RNGP + + ++F N
Sbjct: 816 SLEQDADVVILLHRPDAFDRDDPRGGEADFILAKHRNGPTKTVTVAHQLHLSRFAN 871
>TIGR_CMR|DET_0540 [details] [associations]
symbol:DET_0540 "replicative DNA helicase" species:243164
"Dehalococcoides ethenogenes 195" [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] InterPro:IPR003593 InterPro:IPR007692
InterPro:IPR007693 InterPro:IPR007694 Pfam:PF00772 Pfam:PF03796
PROSITE:PS51199 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0003678
GO:GO:0032508 eggNOG:COG0305 KO:K02314 Gene3D:1.10.860.10
InterPro:IPR016136 SUPFAM:SSF48024 TIGRFAMs:TIGR00665
HOGENOM:HOG000113195 RefSeq:YP_181284.1 ProteinModelPortal:Q3Z915
STRING:Q3Z915 GeneID:3230142 KEGG:det:DET0540 PATRIC:21608147
OMA:LGKLERC ProtClustDB:CLSK837425
BioCyc:DETH243164:GJNF-540-MONOMER Uniprot:Q3Z915
Length = 458
Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
Identities = 168/450 (37%), Positives = 263/450 (58%)
Query: 13 RVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADV 72
++PP+ +++E+SV G LL+D A I L F+ +RLIF+ + L S +
Sbjct: 5 KMPPYDVDAEESVSGSLLIDGQAIFDIIPILKPQDFFTESNRLIFEACMSLYGRSEAINQ 64
Query: 73 ITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISS 132
+TV L G E GG +YL+ + +P++ +I YA IV ++R+LI +IS
Sbjct: 65 VTVAQELERLGKLERCGGSAYLSHVVTVVPTSLDIEHYARIVYRLSVMRQLIEAGQKISE 124
Query: 133 QAFISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTNDN 192
F +V L +AE +F + + + GF I+ +L++ + + + G
Sbjct: 125 LGF-KADPDVSDSLGKAEDLLFRLRHERSSL--GFTHIKNILDKYFEPVPIPGSEGYQA- 180
Query: 193 DVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSME 252
+ + TG +D GLQ DLII+AGRPSMGKT+ +LNI + A+E + AIFS+E
Sbjct: 181 -IPHVLTGLTGMDTFLGGLQRSDLIIMAGRPSMGKTSLALNIARNAAVEQRACTAIFSLE 239
Query: 253 MSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIEL 312
MS L R+L + ++ +R S D+ +I D+I ++++ ++ID++P + V E+
Sbjct: 240 MSRESLVQRLLSNEAAVNSRSIRLNESSPDEERKIMDAIGVLSEAPIFIDDSPQIRVAEI 299
Query: 313 RANSRRLSRQCGKIGVIIIDYLQLMSANSRG-ENRATEISEISRNLKGLAKEINCPILAL 371
R+ + RL R I +II+DYLQL+ G ENR EIS ISR+LKG+A+E+N P++A+
Sbjct: 300 RSKALRL-RYEQNIDLIIVDYLQLIQGEGSGKENRVQEISYISRSLKGIARELNVPVIAI 358
Query: 372 SQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSA------D----KG 421
SQL+R+ E R + +P +SDLRESG+IEQDAD+++FIYRDE Y + D +
Sbjct: 359 SQLSRAPEFRSSHQPQLSDLRESGSIEQDADIVVFIYRDEFYYKEDEWANLHPDQEYPRE 418
Query: 422 IAEIIVSKQRNGPIGNIRLTFSGQYTKFNN 451
IA+II++K RNGPIG ++ F T+F N
Sbjct: 419 IADIIIAKHRNGPIGTVKCRFRHDLTRFEN 448
>TIGR_CMR|ECH_0451 [details] [associations]
symbol:ECH_0451 "replicative DNA helicase" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] InterPro:IPR007692 InterPro:IPR007693
InterPro:IPR007694 Pfam:PF00772 Pfam:PF03796 PROSITE:PS51199
GO:GO:0005524 GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0006260 GO:GO:0003678 GO:GO:0032508 eggNOG:COG0305 KO:K02314
Gene3D:1.10.860.10 InterPro:IPR016136 SUPFAM:SSF48024
TIGRFAMs:TIGR00665 HOGENOM:HOG000113195 RefSeq:YP_507269.1
ProteinModelPortal:Q2GH14 STRING:Q2GH14 GeneID:3927987
KEGG:ech:ECH_0451 PATRIC:20576376 OMA:RKQRMGP ProtClustDB:PRK09165
BioCyc:ECHA205920:GJNR-452-MONOMER Uniprot:Q2GH14
Length = 488
Score = 652 (234.6 bits), Expect = 3.7e-72, Sum P(2) = 3.7e-72
Identities = 154/435 (35%), Positives = 251/435 (57%)
Query: 16 PHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITV 75
P +IE+EQ +LG +L DN D + D + SD F+ HR IF+ I+K+ A+ +++
Sbjct: 19 PCNIEAEQILLGSMLRDNRICDAVEDIITSDVFFDSLHRRIFEQIVKINKRGLVANEVSL 78
Query: 76 FDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQAF 135
N + E GG+ YL +A +I+ A IV D + R LI+ ++ S A+
Sbjct: 79 KMFFDNDEDLIESGGVDYLAKIAAKASIIFDIKNVANIVVDTYLRRCLISFGQDLISGAY 138
Query: 136 ISR--GKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTNDND 193
V QI + A K+F + + +K + Q L+ + KRI N N+
Sbjct: 139 NYDVDNSAVYQI-ESAAQKLFLLGNQGKS-DKTYHQFALLVANIKKRIEFAKN---NEGT 193
Query: 194 VTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIA--IENKLP-----V 246
+ G+S GF +LD++ +GLQ DL+I+A RPSMGKTA +LN+ + + N +
Sbjct: 194 LQGVSVGFRDLDQLLNGLQKSDLLILAARPSMGKTALALNMALNACKILSNSSQYNGQHI 253
Query: 247 AIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPS 306
FS+EMS QLA R++ + +K +G++S ++ ++ D+ K+ L ID++ S
Sbjct: 254 GFFSLEMSAEQLASRVIAIESDVSSYKALSGKISGEELKKVLDASTKVCNLPLIIDDSSS 313
Query: 307 LNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSR--GENRATEISEISRNLKGLAKEI 364
+++ LR RR+ Q + + IDYLQL+ ++ GENR E+SE+++ LK +AKE+
Sbjct: 314 ISISSLRTRIRRM-HQLYNLEAVFIDYLQLVKGTTKRSGENRVQEVSEVTQGLKAIAKEL 372
Query: 365 NCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYN-QNSADKGIA 423
N P++ALSQL+R +EQR +K+P +SDLR+SG+IEQDADV++F+YR+E Y + +G A
Sbjct: 373 NIPVVALSQLSRLVEQRDDKKPQLSDLRDSGSIEQDADVVMFLYREEYYELRKQPSEGTA 432
Query: 424 EIIVSKQRNGPIGNI 438
+ + ++R I N+
Sbjct: 433 KHVEWQERMNSISNV 447
Score = 96 (38.9 bits), Expect = 3.7e-72, Sum P(2) = 3.7e-72
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 422 IAEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452
+A+I++SKQRNGPIGNI+L F + +F ++
Sbjct: 447 VADILISKQRNGPIGNIKLFFEAEKGRFRDY 477
>UNIPROTKB|O83097 [details] [associations]
symbol:dnaB "Replicative DNA helicase" species:243276
"Treponema pallidum subsp. pallidum str. Nichols" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR007692
InterPro:IPR007693 InterPro:IPR007694 Pfam:PF00772 Pfam:PF03796
PROSITE:PS51199 GO:GO:0005524 GO:GO:0003677 GO:GO:0003678
GO:GO:0032508 EMBL:AE000520 GenomeReviews:AE000520_GR
eggNOG:COG0305 KO:K02314 GO:GO:0030894 GO:GO:0006269
Gene3D:1.10.860.10 InterPro:IPR016136 SUPFAM:SSF48024
TIGRFAMs:TIGR00665 PIR:B71370 RefSeq:NP_218498.1
ProteinModelPortal:O83097 IntAct:O83097 GeneID:2611409
KEGG:tpa:TP0058 PATRIC:20530053 OMA:QNMERIV ProtClustDB:CLSK218497
Uniprot:O83097
Length = 438
Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
Identities = 157/448 (35%), Positives = 269/448 (60%)
Query: 3 VPFNTENKKFRVPPHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIK 62
+P T+ K ++PPH++E+E++VLG +LLD++A + L++ FY H+ IF+ +++
Sbjct: 4 MPNPTQELKGKIPPHNLEAERAVLGAVLLDDSALSTATEQLSASSFYSAAHQRIFQALVE 63
Query: 63 LINSSHPADVITVFDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRK 122
L + D++ + + L + + +GG +Y+ SL +PSAAN+ Y IV D + R
Sbjct: 64 LSDLGQRPDILVLSEHLRSCEALDFVGGSAYVASLTDAVPSAANVEYYTRIVCDAAMRRS 123
Query: 123 LITVTDEISSQAFISRGKEVKQILDEAESKIFSIAE-KEICINKGFQQIQPLLNRVIKRI 181
L+ V I+++AF + +L+ A+ +I+ + + + K + + P L +
Sbjct: 124 LLKVARIITAEAF-NDTVSGNIVLETAQREIYDLTNARRVATFKLLKNLIPDL------V 176
Query: 182 NKLHNRGTNDNDVTGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIE 241
N + R N +D+ GI+TG LD +T G Q +LI++ RPSMGKTA ++ + +IAI
Sbjct: 177 NTIETRYRNQSDLVGIATGLTALDNLTGGFQNSELIVIGARPSMGKTALAMTMASNIAIR 236
Query: 242 NKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYI 301
++P A FS+EMS + L R++ + + LR G L D+ RI ++ ++ + LYI
Sbjct: 237 QRIPTAFFSLEMSNLLLMQRLIAAESGVSATNLRKGLLQLSDFGRIQNAAGEMYDAPLYI 296
Query: 302 DETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLA 361
+ P++ +++LRA +RRL Q KI +I +DYL L+ A++ R + + IS++LK LA
Sbjct: 297 VDVPNMKLLDLRAVARRLCVQ-EKIQIIFVDYLGLIVADNPFAPRYEQFAAISQSLKSLA 355
Query: 362 KEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKG 421
+E++ PI+ALSQ+ R E P ++D+R SGAIEQDADV++F++RD +N +
Sbjct: 356 RELDIPIVALSQVGRPAE---GSAPNLADIRGSGAIEQDADVVMFLHRD----RNETE-- 406
Query: 422 IAEIIVSKQRNGPIGNIRLTFSGQYTKF 449
++I++KQRNGPIG + L F +T+F
Sbjct: 407 -TQLILAKQRNGPIGTVELEFQASFTRF 433
>TIGR_CMR|SPO_2655 [details] [associations]
symbol:SPO_2655 "replicative DNA helicase" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR003593 InterPro:IPR007692 InterPro:IPR007693
InterPro:IPR007694 Pfam:PF00772 Pfam:PF03796 PROSITE:PS51199
SMART:SM00382 GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003677 GO:GO:0006260 GO:GO:0003678 GO:GO:0032508 KO:K02314
Gene3D:1.10.860.10 InterPro:IPR016136 SUPFAM:SSF48024
TIGRFAMs:TIGR00665 HOGENOM:HOG000113195 ProtClustDB:PRK09165
RefSeq:YP_167865.1 ProteinModelPortal:Q5LQ41 GeneID:3194228
KEGG:sil:SPO2655 PATRIC:23378721 OMA:VTERRTN Uniprot:Q5LQ41
Length = 496
Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
Identities = 159/415 (38%), Positives = 249/415 (60%)
Query: 16 PHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITV 75
PHS+E+EQ +LG +L +N +D++A + ++FY H I++ I + A +T+
Sbjct: 21 PHSVEAEQQLLGAILTNNDLYDRVAQIIGPEHFYDPVHARIWEVAAARIAKNTLASPVTL 80
Query: 76 FDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQAF 135
++ E+GG +YL +LA SA +R YA+++ D I R+LI + +IS +A
Sbjct: 81 KSFMAEDAGLAELGGAAYLVNLAGASISAFAVRDYAQMIYDLAIRRELIRLGRDISDKAA 140
Query: 136 -ISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTNDNDV 194
+ E K+ + EAE K++ ++E+ + GF+ + + N+ + RG +
Sbjct: 141 RVDVASEPKEQIVEAEQKLYKLSEQGQT-DSGFKSFLKAVTEAVNVTNQAYQRG---GGM 196
Query: 195 TGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNI----------GE-HIAIENK 243
GISTG +LDK GL P DLII+AGRPSMGKT+ + NI G+ H E
Sbjct: 197 AGISTGLNDLDKQLGGLHPSDLIILAGRPSMGKTSLATNIAFNVAKAYKRGQRHDGTEGA 256
Query: 244 LP---VAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLY 300
+ V FS+EMS QLA R+L ++ HK+R G ++ D++ R ++ K + L+
Sbjct: 257 IDGGVVGFFSLEMSAEQLAGRVLAEASEISSHKIRQGDMTEDEFRRFVNAAKDLEACPLF 316
Query: 301 IDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGL 360
ID+TP+L + +L A +RRL R G + +++IDYLQL +NR EI+EIS +K +
Sbjct: 317 IDDTPALPISQLAARARRLKRTHG-LDLLVIDYLQL--CRGMADNRVNEIAEISMGMKAI 373
Query: 361 AKEINCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQ 415
AKE+N P++ALSQL+R +E R +KRP +SDLRESG+IEQDADV++F++R+E Y +
Sbjct: 374 AKELNIPVIALSQLSRQVENRDDKRPQLSDLRESGSIEQDADVVMFVFREEYYKE 428
Score = 253 (94.1 bits), Expect = 5.7e-19, P = 5.7e-19
Identities = 78/235 (33%), Positives = 127/235 (54%)
Query: 235 GEHIAIENKLPVAIFSMEMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKI 294
G AI+ + V FS+EMS QLA R+L ++ HK+R G ++ D++ R ++ K +
Sbjct: 252 GTEGAIDGGV-VGFFSLEMSAEQLAGRVLAEASEISSHKIRQGDMTEDEFRRFVNAAKDL 310
Query: 295 NKSQLYIDETPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMS--ANSRGENRATEIS- 351
L+ID+TP+L + +L A +RRL R G + +++IDYLQL A++R N EIS
Sbjct: 311 EACPLFIDDTPALPISQLAARARRLKRTHG-LDLLVIDYLQLCRGMADNR-VNEIAEISM 368
Query: 352 ---EISRNLK-------GLAKEI---NCPILALSQLNRSLEQRQNKRPIMSDLRESGAIE 398
I++ L L++++ + LS L S Q+ +M RE E
Sbjct: 369 GMKAIAKELNIPVIALSQLSRQVENRDDKRPQLSDLRESGSIEQDADVVMFVFREEYYKE 428
Query: 399 QDADVILFIYRDEVYNQNSADK--GIAEIIVSKQRNGPIGNIRLTFSGQYTKFNN 451
++ + R E + + + ++ G AE+IV KQR+GPIG + L+F Q+T+F N
Sbjct: 429 REKPGDHELDRMEEW-KTAMERLHGKAEVIVGKQRHGPIGTVELSFEAQFTRFGN 482
>TIGR_CMR|APH_0323 [details] [associations]
symbol:APH_0323 "replicative DNA helicase" species:212042
"Anaplasma phagocytophilum HZ" [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] InterPro:IPR007692 InterPro:IPR007693
InterPro:IPR007694 Pfam:PF00772 Pfam:PF03796 PROSITE:PS51199
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0003678 GO:GO:0032508
eggNOG:COG0305 KO:K02314 Gene3D:1.10.860.10 InterPro:IPR016136
SUPFAM:SSF48024 TIGRFAMs:TIGR00665 HOGENOM:HOG000113195
ProtClustDB:PRK09165 RefSeq:YP_504933.1 ProteinModelPortal:Q2GL18
STRING:Q2GL18 GeneID:3930207 KEGG:aph:APH_0323 PATRIC:20949228
OMA:HRTIFET BioCyc:APHA212042:GHPM-353-MONOMER Uniprot:Q2GL18
Length = 485
Score = 629 (226.5 bits), Expect = 9.8e-70, Sum P(2) = 9.8e-70
Identities = 144/404 (35%), Positives = 237/404 (58%)
Query: 16 PHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITV 75
P+++E+EQ ++G +L DN D + D ++S+ FY H IF ++K+ A+ I++
Sbjct: 21 PNNVEAEQMLIGAMLRDNRICDALEDMISSEVFYDPLHGRIFDQVVKINKRGLSANEISL 80
Query: 76 FDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQAF 135
N E GG YL +A +IR A +V D + R LI++ +I +A+
Sbjct: 81 KMFFDNDEALLECGGGEYLAKIAAKASVVFDIRSVARVVFDAHLRRCLISLGSDIVGKAY 140
Query: 136 -ISRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTNDNDV 194
+Q ++ A K+F + K ++ + L+ V K+I + N + +
Sbjct: 141 DYDSDNPAEQQIENAAQKLFLLGNKGKA-DRNYHTFATLIGDVRKKIESARH---NKDAL 196
Query: 195 TGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHI--AIENK-LPVAIFSM 251
GI+ G +LD + +GLQ DLII+A RPSMGKTA +LN+ +++ K V FS+
Sbjct: 197 QGITVGLKDLDLLLNGLQNSDLIILAARPSMGKTALALNMALSACKSLKEKGQSVGFFSL 256
Query: 252 EMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIE 311
EMS +A R++ ++ +K +G++SS D ++ + + I L ID++ +L++
Sbjct: 257 EMSAEHIASRLISIESEISSYKALSGKISSGDLQQVLRASENICDLPLVIDDSSALSISG 316
Query: 312 LRANSRRLSRQCGKIGVIIIDYLQLMSANSR--GENRATEISEISRNLKGLAKEINCPIL 369
LR RR+ Q +GVI IDYLQL+ ++ G+NR E+SE+++ LK +AKE+N P++
Sbjct: 317 LRTRIRRM-HQLHNVGVIFIDYLQLIKGTTKRSGDNRVQEVSEVTQGLKAIAKELNVPLV 375
Query: 370 ALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVY 413
ALSQL+R +EQR +K+P +SDLR+SG+IEQDADV++F+YR+E Y
Sbjct: 376 ALSQLSRLVEQRDDKKPQLSDLRDSGSIEQDADVVMFLYREEYY 419
Score = 96 (38.9 bits), Expect = 9.8e-70, Sum P(2) = 9.8e-70
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 422 IAEIIVSKQRNGPIGNIRLTFSGQYTKFNNF 452
+A++ VSKQRNGPIGN+RL F + KF ++
Sbjct: 445 LADVFVSKQRNGPIGNVRLFFEPEKGKFRDY 475
>TIGR_CMR|NSE_0553 [details] [associations]
symbol:NSE_0553 "replicative DNA helicase" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] InterPro:IPR007692 InterPro:IPR007693
InterPro:IPR007694 Pfam:PF00772 Pfam:PF03796 PROSITE:PS51199
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0003678
EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0032508
eggNOG:COG0305 KO:K02314 Gene3D:1.10.860.10 InterPro:IPR016136
SUPFAM:SSF48024 TIGRFAMs:TIGR00665 HOGENOM:HOG000113195
RefSeq:YP_506435.1 ProteinModelPortal:Q2GDL1 STRING:Q2GDL1
GeneID:3931610 KEGG:nse:NSE_0553 OMA:NDACDEI
ProtClustDB:CLSK2528199 BioCyc:NSEN222891:GHFU-571-MONOMER
Uniprot:Q2GDL1
Length = 494
Score = 635 (228.6 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 146/404 (36%), Positives = 242/404 (59%)
Query: 16 PHSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITV 75
P++IE+EQ +LG LL +N A D+I + ++S FY HR IF+ ++ L + A+ +T+
Sbjct: 34 PNNIEAEQLILGALLTNNDACDEIEEIISSSSFYAPVHRKIFEVLLHLRSKELVANPVTL 93
Query: 76 FDSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQAF 135
+ L ++ IGG YL ++ + ++ A ++++ I R+LI + ++ S A
Sbjct: 94 KNYLESSNELSAIGGQEYLLNIIEKASIVVDVSSLARVIQELYIRRQLIVLAQKMISGAT 153
Query: 136 ISRGK-EVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTNDNDV 194
+ ++EAE +F +A ++ I + ++R K+ +
Sbjct: 154 GEHSNITTSEQIEEAEHFLFQLASSGE-LDSSCLHISKPIEVAVERA-KITFKAKAPFQN 211
Query: 195 TGISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENK---LPVAIFSM 251
T STGF ++D + GLQ DL+I+AGRPSMGKT+ ++++ + E + + FS+
Sbjct: 212 T--STGFRDIDNLLGGLQNSDLLIIAGRPSMGKTSLAISMALRVTRELQKQGMSACFFSL 269
Query: 252 EMSGIQLAMRMLGSVGKLDQHKLRTGR-LSSDDWPRINDSIKKINKSQLYIDETPSLNVI 310
EMS Q+A RML +D +RTG+ S + ++ +S K +++ L+ID+T S+++
Sbjct: 270 EMSADQIASRMLSVHSGVDAFSIRTGKKFSEESLKKVIESSKALSELPLFIDDTASVSIS 329
Query: 311 ELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGE-NRATEISEISRNLKGLAKEINCPIL 369
LR RRL R+ K+G I IDYLQL+ + E NR E+SEI++ LK +AKE+N P++
Sbjct: 330 ALRTKLRRLHRKA-KLGAIFIDYLQLLRGSKGTEFNRVQEVSEITKGLKLIAKELNVPVI 388
Query: 370 ALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVY 413
ALSQL+R +EQR++KRP +SDLRESG+IEQDADV++F++R+ Y
Sbjct: 389 ALSQLSRLVEQREDKRPQLSDLRESGSIEQDADVVMFVFREAYY 432
Score = 76 (31.8 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 423 AEIIVSKQRNGPIGNIRLTFSGQYTKFNN 451
AEII++KQRNGP+G L F T F++
Sbjct: 459 AEIIIAKQRNGPVGTALLFFDQSTTVFDD 487
>TIGR_CMR|BA_0934 [details] [associations]
symbol:BA_0934 "replicative DNA helicase, putative"
species:198094 "Bacillus anthracis str. Ames" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR007692 InterPro:IPR007693 InterPro:IPR007694
Pfam:PF00772 Pfam:PF03796 PROSITE:PS51199 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 GenomeReviews:AE016879_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006260 GO:GO:0003678
GO:GO:0032508 HOGENOM:HOG000113196 KO:K02314 Gene3D:1.10.860.10
InterPro:IPR016136 SUPFAM:SSF48024 TIGRFAMs:TIGR00665 HSSP:P03005
RefSeq:NP_843440.1 RefSeq:YP_017568.2 ProteinModelPortal:Q81UE3
EnsemblBacteria:EBBACT00000009578 EnsemblBacteria:EBBACT00000015391
GeneID:1087670 GeneID:2816456 KEGG:ban:BA_0934 KEGG:bar:GBAA_0934
PATRIC:18779504 OMA:EIYDNAG ProtClustDB:PRK06749
BioCyc:BANT261594:GJ7F-998-MONOMER Uniprot:Q81UE3
Length = 428
Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
Identities = 160/437 (36%), Positives = 265/437 (60%)
Query: 18 SIESEQSVLGGLLLDNTAWDKIADC-LNSDYFYRYDHRLIFKHIIKLINSSHPADVITVF 76
++E+E++VLG LLLD + I +C L YF H+ IF+ + K+ P D++T F
Sbjct: 5 NVEAEKTVLGSLLLDG---ELIKECRLTEQYFSMPVHKSIFQLMRKMEGEGQPIDLVT-F 60
Query: 77 DSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQAFI 136
S + + IGG+ Y L +P+ +N Y +VR + + + ++ +
Sbjct: 61 TSRVDPNFLKGIGGMEYFIGLMDGVPTTSNFSYYEGLVRGAWKMYQAGVLGHKMGERLIA 120
Query: 137 SRGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTNDNDVTG 196
+ ++ I+ E + + + EK+ C+ + F L + ++ +LH + ++TG
Sbjct: 121 EKSEK---IIGETITALCELEEKD-CVCE-FD----LKDALVDLYEELHQ---DAKEITG 168
Query: 197 ISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSGI 256
I TG+ L+K+T GLQ GD +++ RPSMGKTAF+LN+G H A ++ V +FS+EMS
Sbjct: 169 IETGYTSLNKMTCGLQEGDFVVLGARPSMGKTAFALNVGLHAA-KSGAAVGLFSLEMSSK 227
Query: 257 QLAMRMLGSVGKLDQHKLRTG--RLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRA 314
QL RM VG++ +L+ R + +DW R++ + +I + L I + + V ++
Sbjct: 228 QLLKRMASCVGEVSGGRLKNPKHRFAIEDWERVSKAFAEIGELPLEIYDHAGVTVQDIWM 287
Query: 315 NSRRLSRQCG-KIGVIIIDYLQLMSANSRGE-NRATEISEISRNLKGLAKEINCPILALS 372
+R+L R+ G K +II+DYLQL++ + + + NR EISEISR LK LA+E+N ++ALS
Sbjct: 288 QTRKLKRKHGDKKILIIVDYLQLITGDPKHKGNRFQEISEISRKLKLLARELNVCVVALS 347
Query: 373 QLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIAEIIVSKQRN 432
QL+RS+E RQ+KRP++SDLRE+G IEQDADVI+ +YR++ Y++ + K + EI V+K RN
Sbjct: 348 QLSRSVESRQDKRPLLSDLRETGQIEQDADVIMLMYREDYYDKETMQKEMTEIHVAKHRN 407
Query: 433 GPIGNIRLTFSGQYTKF 449
GP+G+ +L F ++ +F
Sbjct: 408 GPVGSFKLRFMKEFGRF 424
>TIGR_CMR|CJE_0667 [details] [associations]
symbol:CJE_0667 "replicative DNA helicase" species:195099
"Campylobacter jejuni RM1221" [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] InterPro:IPR003593 InterPro:IPR007692
InterPro:IPR007693 InterPro:IPR007694 Pfam:PF00772 Pfam:PF03796
PROSITE:PS51199 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0003678
GO:GO:0032508 eggNOG:COG0305 KO:K02314 Gene3D:1.10.860.10
InterPro:IPR016136 SUPFAM:SSF48024 TIGRFAMs:TIGR00665
HOGENOM:HOG000113195 PIR:B81403 RefSeq:YP_178680.1
ProteinModelPortal:Q5HVK5 STRING:Q5HVK5 GeneID:3232011
KEGG:cjr:CJE0667 PATRIC:20043055 OMA:VVIYSLE ProtClustDB:PRK08506
BioCyc:CJEJ195099:GJC0-682-MONOMER Uniprot:Q5HVK5
Length = 458
Score = 624 (224.7 bits), Expect = 1.8e-66, Sum P(2) = 1.8e-66
Identities = 144/400 (36%), Positives = 230/400 (57%)
Query: 17 HSIESEQSVLGGLLLDNTAWDKIADCLNSDYFYRYDHRLIFKHIIKLINSSHPADVITVF 76
+ ++ E+++L ++ A+ IA ++ F H+ IFK +I N+ P
Sbjct: 6 YDLDLERAILSSCIMSEEAYASIAGDISPKDFSLKAHQDIFKAVIACSNNKEPI------ 59
Query: 77 DSLSNTGNAEEIGGLSYLNSLAQNIPSAANIRRYAEIVRDRGILRKLITVTDEISSQAFI 136
S+S ++I LA PS ++ Y + ++ + R+L++ + ++ I
Sbjct: 60 -SVSFLRKHKKIDEQILAEILAT--PSMIDLPAYVNELHEKSVKRQLLSFAHLLPTR--I 114
Query: 137 SRGKEVKQILDEAESKIFSIAEKEICIN-KGFQQIQPLLNRVIKRINKLHNRGTNDNDVT 195
+ + V +I DE +IFSI + +N + + + +++ + + K + + +
Sbjct: 115 NEDRAVSEIADEIGKEIFSITNR---VNSRDIKDVDMVISELFEEFKK--QKTLENKGII 169
Query: 196 GISTGFFELDKITSGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSG 255
G+ TGF L+K+T G + G+LII+A RP MGKT LN + + + K VA+FS+EM
Sbjct: 170 GLDTGFEGLNKMTKGFKGGELIIIAARPGMGKTTLCLNFIDKV-LRQKKGVALFSLEMPA 228
Query: 256 IQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIELRAN 315
Q+ RML S + K+ T L+ D+W R+ D+ ++ +LYI ++ + ++RA
Sbjct: 229 TQIMQRMLSSKTSIPLQKILTADLNDDEWERLGDACNDYSQKKLYIYDSGYATIADVRAI 288
Query: 316 SRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKEINCPILALSQLN 375
RRL Q IG+ +IDY+ LM +NS +R ++SEISR LK LA+E++ PI+ALSQLN
Sbjct: 289 LRRLKSQDESIGLCVIDYIGLMMSNSNFNDRHLQVSEISRGLKLLARELDMPIIALSQLN 348
Query: 376 RSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQ 415
R LEQR NKRP+MSDLRESGAIEQDAD ILF+YRDEVY +
Sbjct: 349 RGLEQRANKRPLMSDLRESGAIEQDADAILFVYRDEVYRE 388
Score = 70 (29.7 bits), Expect = 1.8e-66, Sum P(2) = 1.8e-66
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 423 AEIIVSKQRNGPIGNIRLTF 442
AEIIV K RNGP+G I + F
Sbjct: 418 AEIIVGKNRNGPVGTIEVVF 437
>UNIPROTKB|Q2HJ51 [details] [associations]
symbol:RAD51D "DNA repair protein RAD51 homolog 4"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IEA] InterPro:IPR003593
InterPro:IPR020588 PROSITE:PS50162 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006281 GO:GO:0006310
GO:GO:0008094 eggNOG:COG0468 InterPro:IPR013632 InterPro:IPR016467
Pfam:PF08423 PIRSF:PIRSF005856 GeneTree:ENSGT00550000074609
KO:K10871 EMBL:BC113309 IPI:IPI00716231 RefSeq:NP_001039769.1
UniGene:Bt.59591 ProteinModelPortal:Q2HJ51 STRING:Q2HJ51
Ensembl:ENSBTAT00000025404 GeneID:529507 KEGG:bta:529507 CTD:5892
HOGENOM:HOG000049134 HOVERGEN:HBG057455 InParanoid:Q2HJ51
OMA:QARTQDE OrthoDB:EOG4K0QP3 NextBio:20875047 Uniprot:Q2HJ51
Length = 326
Score = 122 (48.0 bits), Expect = 0.00012, P = 0.00012
Identities = 48/194 (24%), Positives = 98/194 (50%)
Query: 197 ISTGFFELDKIT-SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSMEMSG 255
+STG LDK+ +GL G++ + G P GKT L + H+A + L + ++ +G
Sbjct: 82 LSTGIGSLDKLLDAGLYTGEVTEIVGAPGSGKTQVCLCVAAHVA--HGLQQNVLYIDSNG 139
Query: 256 IQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIE-LR- 313
A R+L +L R + D+ + ++++I + + D L+V++ LR
Sbjct: 140 GLTASRIL---------QLLQAR-TPDEEEQAG-ALQRIQVVRAF-DIFQMLDVLQDLRG 187
Query: 314 ANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEIS---EISRNLKGLAKEINCPILA 370
A S+++S G + V+++D + + A G + ++ +++R LK LA++++ +L
Sbjct: 188 AVSQQVSSSSGTLKVVVVDSVAAVVAPLLGGQQREGLALMMQLARELKTLARDLSVAVLV 247
Query: 371 LSQLNRSLEQRQNK 384
+ + R + Q K
Sbjct: 248 TNHMTRDRDSGQLK 261
>MGI|MGI:1261809 [details] [associations]
symbol:Rad51d "RAD51 homolog D" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006259 "DNA metabolic
process" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IEA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR020588 PROSITE:PS50162 SMART:SM00382
MGI:MGI:1261809 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006281 GO:GO:0006310 GO:GO:0008094 eggNOG:COG0468
InterPro:IPR013632 InterPro:IPR016467 Pfam:PF08423
PIRSF:PIRSF005856 KO:K10871 CTD:5892 HOGENOM:HOG000049134
HOVERGEN:HBG057455 OMA:QARTQDE OrthoDB:EOG4K0QP3 EMBL:AB007040
EMBL:AF034955 EMBL:Y15570 EMBL:AK017835 EMBL:BC049136
IPI:IPI00116701 RefSeq:NP_035365.1 UniGene:Mm.9286
ProteinModelPortal:O55230 SMR:O55230 MINT:MINT-415416 STRING:O55230
PhosphoSite:O55230 PRIDE:O55230 Ensembl:ENSMUST00000018985
GeneID:19364 KEGG:mmu:19364 InParanoid:O55230 NextBio:296433
Bgee:O55230 CleanEx:MM_RAD51L3 Genevestigator:O55230
GermOnline:ENSMUSG00000018841 Uniprot:O55230
Length = 329
Score = 118 (46.6 bits), Expect = 0.00034, P = 0.00034
Identities = 53/258 (20%), Positives = 121/258 (46%)
Query: 138 RGKEVKQILDEAESKIFSIAEKEICINKGFQQIQPLLNRVIKRINKLHNRGTN-----DN 192
RG+++K + D A + + +A+K C ++ + L ++ + + G +
Sbjct: 21 RGRKIKTVADLAAADLEEVAQK--C-GLSYKALVALRRVLLAQFSAFPLNGADLYEELKT 77
Query: 193 DVTGISTGFFELDKIT-SGLQPGDLIIVAGRPSMGKTAFSLNIGEHIAIENKLPVAIFSM 251
+STG LDK+ +GL G++ + G P GKT L + ++A + L + +
Sbjct: 78 STAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCVAANVA--HSLQQNVLYV 135
Query: 252 EMSGIQLAMRMLGSVGKLDQHKLRTGRLSSDDWPRINDSIKKINKSQLYIDETPSLNVIE 311
+ +G A R+L +L R ++ + ++++I + + D L++++
Sbjct: 136 DSNGGMTASRLL---------QLLQARTQDEE--KQASALQRIQVVRSF-DIFRMLDMLQ 183
Query: 312 -LRAN-SRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEIS---EISRNLKGLAKEINC 366
LR +++ + G + V+I+D + + A G + ++ +++R LK LA+++
Sbjct: 184 DLRGTIAQQEATSSGAVKVVIVDSVTAVVAPLLGGQQREGLALMMQLARELKILARDLGV 243
Query: 367 PILALSQLNRSLEQRQNK 384
++ + L R + R+ K
Sbjct: 244 AVVVTNHLTRDWDGRRFK 261
>TAIR|locus:2204584 [details] [associations]
symbol:AT1G30680 species:3702 "Arabidopsis thaliana"
[GO:0003678 "DNA helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR007694
PROSITE:PS51199 InterPro:IPR006171 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0006260 GO:GO:0003678
GO:GO:0032508 eggNOG:NOG29349 Pfam:PF13662 SMART:SM00493
EMBL:BT046201 IPI:IPI00546189 RefSeq:NP_849735.1 UniGene:At.47034
ProteinModelPortal:B5X582 SMR:B5X582 PaxDb:B5X582 PRIDE:B5X582
EnsemblPlants:AT1G30680.1 GeneID:839948 KEGG:ath:AT1G30680
TAIR:At1g30680 HOGENOM:HOG000030580 OMA:GKSEWID PhylomeDB:B5X582
ProtClustDB:CLSN2918302 Genevestigator:B5X582 Uniprot:B5X582
Length = 709
Score = 120 (47.3 bits), Expect = 0.00067, P = 0.00067
Identities = 64/270 (23%), Positives = 124/270 (45%)
Query: 196 GISTGFFELDKITSGLQPGDLIIVAGRPSMGKT----AFSLNIGEHIAIENKLPVAIFSM 251
G+STG+ LD + S + PG+L +V G P+ GK+ A N+ + + A+ SM
Sbjct: 436 GVSTGWKNLDNLYS-VVPGELTVVTGIPNSGKSEWIDAMLCNLNHSVGWK----FALCSM 490
Query: 252 EMSGIQLAMRMLGS-VGK--LDQHKLRT-GRLS---SDDWPR-INDSIKKINKSQLYIDE 303
E A ++L + K D R+ R+S D+ + +ND+ I + +D
Sbjct: 491 ENKVRDHARKLLEKHIKKPFFDADYGRSVQRMSVEEKDEGKKWLNDTFYPI---RCEMDS 547
Query: 304 TPSLNVIELRANSRRLSRQCGKIGVIIIDYLQLMSANSRGENRATEISEISRNLKGLAKE 363
PS++ + RA + L + G G++I Y +L + + +S++ +K ++
Sbjct: 548 LPSIDWVLERAKAAVL--RYGIRGLVIDPYNELDHQRTPRQTETEYVSQMLTKIKRFSQH 605
Query: 364 INCPILALSQLNRSLEQRQNKRPIMSDLRESGAIEQDADVILFIYRDEVYNQNSADKGIA 423
+C + ++ + L+ P + D+ S D + ++R+ ++N+ +
Sbjct: 606 HSCHVWFVAH-PKQLQHWDGGAPNLYDISGSAHFINKCDNGIIVHRNR--DENAGPLDLV 662
Query: 424 EIIVSKQRN---GPIGNIRLTF---SGQYT 447
+I V K RN G IG+ L + +G Y+
Sbjct: 663 QIGVRKVRNKVAGQIGDAYLCYDRTTGSYS 692
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.136 0.379 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 452 452 0.00093 118 3 11 22 0.40 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 22
No. of states in DFA: 617 (66 KB)
Total size of DFA: 236 KB (2129 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 41.30u 0.11s 41.41t Elapsed: 00:00:17
Total cpu time: 41.31u 0.11s 41.42t Elapsed: 00:00:18
Start: Thu Aug 15 15:21:19 2013 End: Thu Aug 15 15:21:37 2013