BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2894
(515 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OAA|A Chain A, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|B Chain B, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|C Chain C, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|I Chain I, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|J Chain J, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|K Chain K, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Q Chain Q, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|R Chain R, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|S Chain S, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Y Chain Y, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Z Chain Z, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|AA Chain a, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 513
Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/510 (62%), Positives = 416/510 (81%)
Query: 1 MKINASEISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVF 60
M++N++EIS +I+++I FN +E +N+G ++SV DG+ +I+GL++ MQGEM+ PGN +
Sbjct: 1 MQLNSTEISELIKQRIAQFNVVSEAHNEGTIVSVSDGVIRIHGLADCMQGEMISLPGNRY 60
Query: 61 GLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGP 120
+ALNLERDS+GAV++G Y + EG VKCTGRILEVP+G L GRV+N LG PIDGKGP
Sbjct: 61 AIALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRGLLGRVVNTLGAPIDGKGP 120
Query: 121 IKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAI 180
+ + +E +APGVI RQSV +P+QTG KA+DS++PIG+GQRELIIGDRQTGK+++AI
Sbjct: 121 LDHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAI 180
Query: 181 DIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAY 240
D IINQ++ + CIYVAIGQK S+I LE++GA+ TI+V ATAS+SA++Q+++ Y
Sbjct: 181 DAIINQRDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPY 240
Query: 241 SGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLER 300
+GC +GEYFRD G+DAL++YDDLSKQAVAYRQISLLL+RPPGREA+PGD+FYLHSRLLER
Sbjct: 241 AGCAMGEYFRDRGEDALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLER 300
Query: 301 SARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLF 360
+ARVN +YVE +T G+V GKTGSLTA+PIIETQAGD+SAFVPTNVISITDGQIFL+++LF
Sbjct: 301 AARVNAEYVEAFTKGEVKGKTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETNLF 360
Query: 361 NSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSSDLDLVTRKQ 420
N+GIRPA+N GISVSRVGGAAQ K +KKLS IRT LAQYRELAAFSQF+SDLD TRKQ
Sbjct: 361 NAGIRPAVNPGISVSRVGGAAQTKIMKKLSGGIRTALAQYRELAAFSQFASDLDDATRKQ 420
Query: 421 LDRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFMKTCQN 480
LD G +VTELLKQKQY+P+ V+ +++LFA +G+L D+E+ KI +FE++L ++
Sbjct: 421 LDHGQKVTELLKQKQYAPMSVAQQSLVLFAAERGYLADVELSKIGSFEAALLAYVDRDHA 480
Query: 481 SILEKIKNVNEFNADIEDSLTTILINFKKS 510
++++I +N +IE L IL +FK +
Sbjct: 481 PLMQEINQTGGYNDEIEGKLKGILDSFKAT 510
>pdb|2QE7|A Chain A, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|B Chain B, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|C Chain C, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 502
Score = 596 bits (1537), Expect = e-171, Method: Compositional matrix adjust.
Identities = 288/511 (56%), Positives = 374/511 (73%), Gaps = 13/511 (2%)
Query: 1 MKINASEISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVF 60
M I EIS +I++QI+N+ E+ G VI V DGI +++GL M GE+LEF V
Sbjct: 1 MSIRPEEISALIKKQIENYEADLEVVEVGTVIQVGDGIARVHGLEKVMAGELLEFENGVM 60
Query: 61 GLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGP 120
G+A NLE D++G VILG Y I EG VK TGRI+EVP+G L GRV+N LG P+DG+GP
Sbjct: 61 GMAQNLEEDNVGVVILGPYTEIREGTQVKRTGRIMEVPVGEALLGRVVNPLGQPLDGRGP 120
Query: 121 IKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAI 180
I+T PIE APGV+ R+SV EPLQTGIKAIDS++PIG+GQRELIIGDRQTGK++IAI
Sbjct: 121 IETAEYRPIESPAPGVMDRKSVHEPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTTIAI 180
Query: 181 DIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAY 240
D IINQK ++V CIYVAIGQK S++ L ++ A+ YTI+V A+AS+ A + +++ Y
Sbjct: 181 DTIINQKGQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAPY 240
Query: 241 SGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLER 300
+GC +GEYF GK ALVVYDDLSKQA AYR++SLLL+RPPGREAYPGD+FYLHSRLLER
Sbjct: 241 AGCAMGEYFMYKGKHALVVYDDLSKQAAAYRELSLLLRRPPGREAYPGDVFYLHSRLLER 300
Query: 301 SARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLF 360
+A+++ + G GSLTA+P IETQAGD+SA++PTNVISITDGQIFL+S LF
Sbjct: 301 AAKLS-----DEKGG------GSLTALPFIETQAGDVSAYIPTNVISITDGQIFLESDLF 349
Query: 361 NSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSSDLDLVTRKQ 420
SG+RPA+N GISVSRVGGAAQIK +KK++ +R DLAQYREL AF+QF SDLD T+ +
Sbjct: 350 YSGVRPAVNVGISVSRVGGAAQIKAMKKVAGTLRLDLAQYRELQAFAQFGSDLDKATQAK 409
Query: 421 LDRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFMKTCQN 480
L+RG R E+LKQ ++ P+PV + ++A+ GF+DDI ++ + FE L FM+ ++
Sbjct: 410 LNRGERTVEILKQDEHKPMPVEEQVISIYAVTNGFMDDIPVEDVRRFEEELLSFMRANKD 469
Query: 481 SILEKIKNVNEFNADIEDSLTTILINFKKSY 511
S+L+ I+ E E L + FKK +
Sbjct: 470 SLLDHIRQTGELPDTKE--LDAAIEEFKKGF 498
>pdb|1SKY|B Chain B, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 502
Score = 590 bits (1520), Expect = e-169, Method: Compositional matrix adjust.
Identities = 290/511 (56%), Positives = 372/511 (72%), Gaps = 13/511 (2%)
Query: 1 MKINASEISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVF 60
M I A EIS +I++QI+N+ + ++ + G VI V DGI + +GL N M GE +EF V
Sbjct: 1 MSIRAEEISALIKQQIENYESQIQVSDVGTVIQVGDGIARAHGLDNVMSGEAVEFANAVM 60
Query: 61 GLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGP 120
G+ALNLE +++G VILG Y I EGD V+ TGRI+EVP+G L GRV+N LG P+DG GP
Sbjct: 61 GMALNLEENNVGIVILGPYTGIKEGDEVRRTGRIMEVPVGETLIGRVVNPLGQPVDGLGP 120
Query: 121 IKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAI 180
++T T PIE APGV+ R+SV EPLQTGIKAID++VPIG+GQRELIIGDRQTGK+S+AI
Sbjct: 121 VETTETRPIESRAPGVMDRRSVHEPLQTGIKAIDALVPIGRGQRELIIGDRQTGKTSVAI 180
Query: 181 DIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAY 240
D IINQK++N+ CIYVAIGQK S++ L K+GA YTI+V A+AS A + F++ Y
Sbjct: 181 DTIINQKDQNMICIYVAIGQKESTVATVVETLAKHGAPDYTIVVTASASQPAPLLFLAPY 240
Query: 241 SGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLER 300
+G +GEYF GK LVV DDLSKQA AYRQ+SLLL+RPPGREAYPGDIFYLHSRLLER
Sbjct: 241 AGVAMGEYFMIMGKHVLVVIDDLSKQAAAYRQLSLLLRRPPGREAYPGDIFYLHSRLLER 300
Query: 301 SARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLF 360
+A+++ + G GSLTA+P +ETQAGDISA++PTNVISITDGQIFL S LF
Sbjct: 301 AAKLS-----DAKGG------GSLTALPFVETQAGDISAYIPTNVISITDGQIFLQSDLF 349
Query: 361 NSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSSDLDLVTRKQ 420
SG+RPAINAG+SVSRVGGAAQIK +KK++ +R DLA YREL AF+QF SDLD T+
Sbjct: 350 FSGVRPAINAGLSVSRVGGAAQIKAMKKVAGTLRLDLAAYRELEAFAQFGSDLDKATQAN 409
Query: 421 LDRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFMKTCQN 480
+ RGAR E+LKQ + P+PV +I++A+ +GFLDDI ++ + FE Y ++
Sbjct: 410 VARGARTVEVLKQDLHQPIPVEKQVLIIYALTRGFLDDIPVEDVRRFEKEFYLWLDQNGQ 469
Query: 481 SILEKIKNVNEFNADIEDSLTTILINFKKSY 511
+LE I+ + ED L + FKK++
Sbjct: 470 HLLEHIRTTKDLPN--EDDLNQAIEAFKKTF 498
>pdb|2R9V|A Chain A, Crystal Structure Of Atp Synthase Subunit Alpha (Tm1612)
From Thermotoga Maritima At 2.10 A Resolution
Length = 515
Score = 582 bits (1499), Expect = e-166, Method: Compositional matrix adjust.
Identities = 288/512 (56%), Positives = 373/512 (72%), Gaps = 12/512 (2%)
Query: 1 MKINASEISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEF-PGNV 59
++IN EI+ +++E+IK+F ++ + GKVI V DGI + YGL+ E++EF V
Sbjct: 13 LRINPGEITKVLEEKIKSFEEKIDLEDTGKVIQVGDGIARAYGLNKVXVSELVEFVETGV 72
Query: 60 FGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKG 119
G+A NLE D++G +ILG+Y+ I EG V+ RI+EVP+G EL GRV+N LG+P+DGKG
Sbjct: 73 KGVAFNLEEDNVGIIILGEYKDIKEGHTVRRLKRIIEVPVGEELLGRVVNPLGEPLDGKG 132
Query: 120 PIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIA 179
PI K PIE APGVI R+ V PLQTGIKAIDS +PIG+GQRELIIGDRQTGK++IA
Sbjct: 133 PINAKNFRPIEIKAPGVIYRKPVDTPLQTGIKAIDSXIPIGRGQRELIIGDRQTGKTAIA 192
Query: 180 IDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISA 239
ID IINQK + V CIYVAIGQK S+I + + L +YGA YT +V A+ASD AS+Q+I+
Sbjct: 193 IDTIINQKGQGVYCIYVAIGQKKSAIARIIDKLRQYGAXEYTTVVVASASDPASLQYIAP 252
Query: 240 YSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLE 299
Y+GC GEYF G+DALVVYDDLSK AVAYRQ+SLL +RPPGREAYPGDIFYLHSRLLE
Sbjct: 253 YAGCAXGEYFAYSGRDALVVYDDLSKHAVAYRQLSLLXRRPPGREAYPGDIFYLHSRLLE 312
Query: 300 RSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSL 359
R+ R+ N K+ G GSLTA+PI+ETQA DISA++PTNVISITDGQI+L+ L
Sbjct: 313 RAVRL---------NDKLGG--GSLTALPIVETQANDISAYIPTNVISITDGQIYLEPGL 361
Query: 360 FNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSSDLDLVTRK 419
F +G RPAIN G+SVSRVGG+AQIK K+++ +R DLAQYREL F+QF+++LD TR
Sbjct: 362 FYAGQRPAINVGLSVSRVGGSAQIKAXKQVAGXLRIDLAQYRELETFAQFATELDPATRA 421
Query: 420 QLDRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFMKTCQ 479
Q+ RG R+ ELLKQ+QYSP PV V+LFA +G+LDD+ ++++ FE +F
Sbjct: 422 QIIRGQRLXELLKQEQYSPXPVEEQVVVLFAGVRGYLDDLPVEEVRRFEKEFLRFXHEKH 481
Query: 480 NSILEKIKNVNEFNADIEDSLTTILINFKKSY 511
IL+ IK E ++ E+ L + FK ++
Sbjct: 482 QDILDDIKTKKELTSETEEKLKKAIEEFKTTF 513
>pdb|2W6E|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 553
Score = 571 bits (1472), Expect = e-163, Method: Compositional matrix adjust.
Identities = 277/520 (53%), Positives = 381/520 (73%), Gaps = 19/520 (3%)
Query: 2 KINASEISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVFG 61
K +E+S+I++E+I + + ++ G+V+S+ DGI +++GL N EM+EF + G
Sbjct: 45 KTGTAEVSSILEERILGADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKG 104
Query: 62 LALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPI 121
++LNLE D++G V+ G + I EGDIVK TG I++VP+G EL GRV++ALG+ IDGKGPI
Sbjct: 105 MSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPI 164
Query: 122 KTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAID 181
+K + APG+I R SV EP+QTGIKA+DS+VPIG+GQRELIIGDRQTGK+SIAID
Sbjct: 165 GSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAID 224
Query: 182 IIINQKN--------KNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSAS 233
IINQK K + CIYVAIGQK S++ + L AM YTI+V+ATASD+A
Sbjct: 225 TIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAP 284
Query: 234 MQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYL 293
+Q+++ YSGC++GEYFRD+GK AL++YDDLSKQAVAYRQ+SLLL+RPPGREAYPGD+FYL
Sbjct: 285 LQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYL 344
Query: 294 HSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQI 353
HSRLLER+A++N + GSLTA+P+IETQAGD+SA++PTNVISITDGQI
Sbjct: 345 HSRLLERAAKMNDAF-----------GGGSLTALPVIETQAGDVSAYIPTNVISITDGQI 393
Query: 354 FLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSSDL 413
FL++ LF GIRPAIN G+SVSRVG AAQ + +K+++ ++ +LAQYRE+AAF+QF SDL
Sbjct: 394 FLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDL 453
Query: 414 DLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYK 473
D T++ L RG R+TELLKQ QYSP+ + +++A +G+LD +E KI FE++
Sbjct: 454 DAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLS 513
Query: 474 FMKTCQNSILEKIKNVNEFNADIEDSLTTILINFKKSYDA 513
+ + ++L KI+ + + + + L I+ NF ++A
Sbjct: 514 HVISQHQALLSKIRTDGKISEESDAKLKEIVTNFLAGFEA 553
>pdb|2JIZ|A Chain A, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|B Chain B, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|C Chain C, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|H Chain H, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|I Chain I, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|J Chain J, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|A Chain A, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|B Chain B, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|C Chain C, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|H Chain H, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|I Chain I, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|J Chain J, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|A Chain A, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|B Chain B, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|C Chain C, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|H Chain H, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|I Chain I, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|J Chain J, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|A Chain A, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|B Chain B, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|C Chain C, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1
Length = 510
Score = 571 bits (1471), Expect = e-163, Method: Compositional matrix adjust.
Identities = 277/520 (53%), Positives = 381/520 (73%), Gaps = 19/520 (3%)
Query: 2 KINASEISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVFG 61
K +E+S+I++E+I + + ++ G+V+S+ DGI +++GL N EM+EF + G
Sbjct: 2 KTGTAEVSSILEERILGADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKG 61
Query: 62 LALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPI 121
++LNLE D++G V+ G + I EGDIVK TG I++VP+G EL GRV++ALG+ IDGKGPI
Sbjct: 62 MSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPI 121
Query: 122 KTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAID 181
+K + APG+I R SV EP+QTGIKA+DS+VPIG+GQRELIIGDRQTGK+SIAID
Sbjct: 122 GSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAID 181
Query: 182 IIINQKN--------KNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSAS 233
IINQK K + CIYVAIGQK S++ + L AM YTI+V+ATASD+A
Sbjct: 182 TIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAP 241
Query: 234 MQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYL 293
+Q+++ YSGC++GEYFRD+GK AL++YDDLSKQAVAYRQ+SLLL+RPPGREAYPGD+FYL
Sbjct: 242 LQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYL 301
Query: 294 HSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQI 353
HSRLLER+A++N + GSLTA+P+IETQAGD+SA++PTNVISITDGQI
Sbjct: 302 HSRLLERAAKMNDAF-----------GGGSLTALPVIETQAGDVSAYIPTNVISITDGQI 350
Query: 354 FLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSSDL 413
FL++ LF GIRPAIN G+SVSRVG AAQ + +K+++ ++ +LAQYRE+AAF+QF SDL
Sbjct: 351 FLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDL 410
Query: 414 DLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYK 473
D T++ L RG R+TELLKQ QYSP+ + +++A +G+LD +E KI FE++
Sbjct: 411 DAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLS 470
Query: 474 FMKTCQNSILEKIKNVNEFNADIEDSLTTILINFKKSYDA 513
+ + ++L KI+ + + + + L I+ NF ++A
Sbjct: 471 HVISQHQALLSKIRTDGKISEESDAKLKEIVTNFLAGFEA 510
>pdb|1COW|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
Length = 510
Score = 570 bits (1469), Expect = e-163, Method: Compositional matrix adjust.
Identities = 277/520 (53%), Positives = 381/520 (73%), Gaps = 19/520 (3%)
Query: 2 KINASEISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVFG 61
K +E+S+I++E+I + + ++ G+V+S+ DGI +++GL N EM+EF + G
Sbjct: 2 KTGTAEVSSILEERILGADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKG 61
Query: 62 LALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPI 121
++LNLE D++G V+ G + I EGDIVK TG I++VP+G EL GRV++ALG+ IDGKGPI
Sbjct: 62 MSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPI 121
Query: 122 KTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAID 181
+K + APG+I R SV EP+QTGIKA+DS+VPIG+GQRELIIGDRQTGK+SIAID
Sbjct: 122 GSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAID 181
Query: 182 IIINQKN--------KNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSAS 233
IINQK K + CIYVAIGQK S++ + L AM YTI+V+ATASD+A
Sbjct: 182 TIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAP 241
Query: 234 MQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYL 293
+Q+++ YSGC++GEYFRD+GK AL++YDDLSKQAVAYRQ+SLLL+RPPGREAYPGD+FYL
Sbjct: 242 LQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYL 301
Query: 294 HSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQI 353
HSRLLER+A++N + GSLTA+P+IETQAGD+SA++PTNVISITDGQI
Sbjct: 302 HSRLLERAAKMNDAF-----------GGGSLTALPVIETQAGDVSAYIPTNVISITDGQI 350
Query: 354 FLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSSDL 413
FL++ LF GIRPAIN G+SVSRVG AAQ + +K+++ ++ +LAQYRE+AAF+QF SDL
Sbjct: 351 FLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDL 410
Query: 414 DLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYK 473
D T++ L RG R+TELLKQ QYSP+ + +++A +G+LD +E KI FE++
Sbjct: 411 DAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLS 470
Query: 474 FMKTCQNSILEKIKNVNEFNADIEDSLTTILINFKKSYDA 513
+ + ++L KI+ + + + + L I+ NF ++A
Sbjct: 471 HVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGFEA 510
>pdb|1BMF|A Chain A, Bovine Mitochondrial F1-Atpase
pdb|1BMF|B Chain B, Bovine Mitochondrial F1-Atpase
pdb|1BMF|C Chain C, Bovine Mitochondrial F1-Atpase
pdb|1NBM|A Chain A, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|B Chain B, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|C Chain C, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1QO1|A Chain A, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|B Chain B, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|C Chain C, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|A Chain A, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|B Chain B, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|C Chain C, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|A Chain A, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|B Chain B, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|C Chain C, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|A Chain A, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|B Chain B, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|C Chain C, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|A Chain A, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|B Chain B, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|C Chain C, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|A Chain A, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|B Chain B, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|C Chain C, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|A Chain A, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|B Chain B, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|C Chain C, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|A Chain A, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|B Chain B, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|C Chain C, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2WSS|A Chain A, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|B Chain B, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|C Chain C, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|J Chain J, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|K Chain K, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|L Chain L, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|4ASU|A Chain A, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|B Chain B, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|C Chain C, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 510
Score = 570 bits (1468), Expect = e-163, Method: Compositional matrix adjust.
Identities = 277/520 (53%), Positives = 381/520 (73%), Gaps = 19/520 (3%)
Query: 2 KINASEISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVFG 61
K +E+S+I++E+I + + ++ G+V+S+ DGI +++GL N EM+EF + G
Sbjct: 2 KTGTAEVSSILEERILGADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKG 61
Query: 62 LALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPI 121
++LNLE D++G V+ G + I EGDIVK TG I++VP+G EL GRV++ALG+ IDGKGPI
Sbjct: 62 MSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPI 121
Query: 122 KTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAID 181
+K + APG+I R SV EP+QTGIKA+DS+VPIG+GQRELIIGDRQTGK+SIAID
Sbjct: 122 GSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAID 181
Query: 182 IIINQKN--------KNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSAS 233
IINQK K + CIYVAIGQK S++ + L AM YTI+V+ATASD+A
Sbjct: 182 TIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAP 241
Query: 234 MQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYL 293
+Q+++ YSGC++GEYFRD+GK AL++YDDLSKQAVAYRQ+SLLL+RPPGREAYPGD+FYL
Sbjct: 242 LQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYL 301
Query: 294 HSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQI 353
HSRLLER+A++N + GSLTA+P+IETQAGD+SA++PTNVISITDGQI
Sbjct: 302 HSRLLERAAKMNDAF-----------GGGSLTALPVIETQAGDVSAYIPTNVISITDGQI 350
Query: 354 FLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSSDL 413
FL++ LF GIRPAIN G+SVSRVG AAQ + +K+++ ++ +LAQYRE+AAF+QF SDL
Sbjct: 351 FLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDL 410
Query: 414 DLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYK 473
D T++ L RG R+TELLKQ QYSP+ + +++A +G+LD +E KI FE++
Sbjct: 411 DAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLS 470
Query: 474 FMKTCQNSILEKIKNVNEFNADIEDSLTTILINFKKSYDA 513
+ + ++L KI+ + + + + L I+ NF ++A
Sbjct: 471 HVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGFEA 510
>pdb|2F43|A Chain A, Rat Liver F1-atpase
Length = 510
Score = 568 bits (1465), Expect = e-162, Method: Compositional matrix adjust.
Identities = 276/519 (53%), Positives = 380/519 (73%), Gaps = 19/519 (3%)
Query: 2 KINASEISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVFG 61
K +E+S+I++E+I + + ++ G+V+S+ DGI +++GL N EM+EF + G
Sbjct: 2 KTGTAEMSSILEERILGADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKG 61
Query: 62 LALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPI 121
++LNLE D++G V+ G + I EGDIVK TG I++VP+G EL GRV++ALG+ IDGKGP+
Sbjct: 62 MSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGDELLGRVVDALGNAIDGKGPV 121
Query: 122 KTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAID 181
+K+ + APG+I R SV EP+QTGIKA+DS+VPIG+GQRELIIGDRQTGK+SIAID
Sbjct: 122 GSKIRRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAID 181
Query: 182 IIINQKN--------KNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSAS 233
IINQK K + CIYVAIGQK S++ + L AM YTI+V+ATASD+A
Sbjct: 182 TIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAP 241
Query: 234 MQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYL 293
+Q+++ YSGC++GEYFRD+GK AL++YDDLSKQAVAYRQ+SLLL+RPPGREAYPGD+FYL
Sbjct: 242 LQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYL 301
Query: 294 HSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQI 353
HSRLLER+A++N + GSLTA+P+IETQAGD+SA++PTNVISITDGQI
Sbjct: 302 HSRLLERAAKMNDSF-----------GGGSLTALPVIETQAGDVSAYIPTNVISITDGQI 350
Query: 354 FLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSSDL 413
FL++ LF GIRPAIN G+SVSRVG AAQ + +K+++ ++ +LAQYRE+AAF+QF SDL
Sbjct: 351 FLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDL 410
Query: 414 DLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYK 473
D T++ L RG R+TELLKQ QYSP+ + +++A +G+LD +E KI FES+
Sbjct: 411 DAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFESAFLS 470
Query: 474 FMKTCQNSILEKIKNVNEFNADIEDSLTTILINFKKSYD 512
+ + S+L I++ + + + L I+ NF ++
Sbjct: 471 HVVSQHQSLLGNIRSDGKISEQSDAKLKEIVTNFLAGFE 509
>pdb|1MAB|A Chain A, Rat Liver F1-Atpase
Length = 510
Score = 568 bits (1465), Expect = e-162, Method: Compositional matrix adjust.
Identities = 276/519 (53%), Positives = 379/519 (73%), Gaps = 19/519 (3%)
Query: 2 KINASEISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVFG 61
K +E+S+I++E+I + + ++ G+V+S+ DGI +++GL N EM+EF + G
Sbjct: 2 KTGTAEMSSILEERILGADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKG 61
Query: 62 LALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPI 121
++LNLE D++G V+ G + I EGDIVK TG I++VP+G EL GRV++ALG+ IDGKGP+
Sbjct: 62 MSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGDELLGRVVDALGNAIDGKGPV 121
Query: 122 KTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAID 181
+K+ + APG+I R SV EP+QTGIKA+DS+VPIG+GQRELIIGDRQTGK+SIAID
Sbjct: 122 GSKIRRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAID 181
Query: 182 IIINQKN--------KNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSAS 233
IINQK K + CIYVAIGQK S++ + L AM YTI+V+ATASD+A
Sbjct: 182 TIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAP 241
Query: 234 MQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYL 293
+Q+++ YSGC++GEYFRD+GK AL++YDDLSKQAVAYRQ+SLLL+RPPGREAYPGD+FYL
Sbjct: 242 LQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYL 301
Query: 294 HSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQI 353
HSRLLER+A++N + GSLTA+P+IETQAGD+SA++PTNVISITDGQI
Sbjct: 302 HSRLLERAAKMNDSF-----------GGGSLTALPVIETQAGDVSAYIPTNVISITDGQI 350
Query: 354 FLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSSDL 413
FL++ LF GIRPAIN G+SVSRVG AAQ + +K+++ ++ +LAQYRE+AAF+QF SDL
Sbjct: 351 FLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDL 410
Query: 414 DLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYK 473
D T++ L RG R+TELLKQ QYSP+ + +++A +G+LD +E KI FES+
Sbjct: 411 DAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFESAFLS 470
Query: 474 FMKTCQNSILEKIKNVNEFNADIEDSLTTILINFKKSYD 512
+ + S+L I+ + + + L I+ NF ++
Sbjct: 471 HVVSQHQSLLGNIRTDGKISEQSDAKLKEIVTNFLAGFE 509
>pdb|2XOK|A Chain A, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|B Chain B, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|C Chain C, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 545
Score = 558 bits (1439), Expect = e-159, Method: Compositional matrix adjust.
Identities = 266/518 (51%), Positives = 382/518 (73%), Gaps = 19/518 (3%)
Query: 2 KINASEISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVFG 61
K +E+S+I++E+IK ++ + G+V++V DGI +++GL+N E++EF V G
Sbjct: 39 KAQPTEVSSILEERIKGVSDEANLNETGRVLAVGDGIARVFGLNNIQAEELVEFSSGVKG 98
Query: 62 LALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPI 121
+ALNLE +G V+ G + EG++VK TG I++VP+GP L GRV++ALG+PIDGKGPI
Sbjct: 99 MALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPI 158
Query: 122 KTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAID 181
+ + APG++ R+SV EP+QTG+KA+D++VPIG+GQRELIIGDRQTGK+++A+D
Sbjct: 159 DAAGRSRAQVKAPGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALD 218
Query: 182 IIINQK--------NKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSAS 233
I+NQK +K + C+YVA+GQK S++ + LE++ AM Y+IIVAATAS++A
Sbjct: 219 TILNQKRWNNGSDESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAP 278
Query: 234 MQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYL 293
+Q+++ ++ +IGE+FRD+GK AL+VYDDLSKQAVAYRQ+SLLL+RPPGREAYPGD+FYL
Sbjct: 279 LQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYL 338
Query: 294 HSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQI 353
HSRLLER+A+++ K +GSLTA+P+IETQ GD+SA++PTNVISITDGQI
Sbjct: 339 HSRLLERAAKLSEKE-----------GSGSLTALPVIETQGGDVSAYIPTNVISITDGQI 387
Query: 354 FLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSSDL 413
FL++ LF GIRPAIN G+SVSRVG AAQ+K +K+++ +++ LAQYRE+AAF+QF SDL
Sbjct: 388 FLEAELFYKGIRPAINVGLSVSRVGSAAQVKALKQVAGSLKLFLAQYREVAAFAQFGSDL 447
Query: 414 DLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYK 473
D T++ L RG R+T+LLKQ QYSPL +++A G LD IE+ +I FESS
Sbjct: 448 DASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLS 507
Query: 474 FMKTCQNSILEKIKNVNEFNADIEDSLTTILINFKKSY 511
++K+ N +L +I+ E + ++ SL + +F ++
Sbjct: 508 YLKSNHNELLTEIREKGELSKELLASLKSATESFVATF 545
>pdb|2HLD|A Chain A, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|B Chain B, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|C Chain C, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|J Chain J, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|K Chain K, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|L Chain L, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|S Chain S, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|T Chain T, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|U Chain U, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|3FKS|A Chain A, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|B Chain B, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|C Chain C, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|J Chain J, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|K Chain K, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|L Chain L, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|S Chain S, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|T Chain T, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|U Chain U, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|2WPD|A Chain A, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|B Chain B, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|C Chain C, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3OE7|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEH|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3ZRY|A Chain A, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|B Chain B, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|C Chain C, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|A Chain A, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|B Chain B, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|C Chain C, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|K Chain K, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|L Chain L, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|M Chain M, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 510
Score = 558 bits (1437), Expect = e-159, Method: Compositional matrix adjust.
Identities = 266/518 (51%), Positives = 382/518 (73%), Gaps = 19/518 (3%)
Query: 2 KINASEISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVFG 61
K +E+S+I++E+IK ++ + G+V++V DGI +++GL+N E++EF V G
Sbjct: 4 KAQPTEVSSILEERIKGVSDEANLNETGRVLAVGDGIARVFGLNNIQAEELVEFSSGVKG 63
Query: 62 LALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPI 121
+ALNLE +G V+ G + EG++VK TG I++VP+GP L GRV++ALG+PIDGKGPI
Sbjct: 64 MALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPI 123
Query: 122 KTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAID 181
+ + APG++ R+SV EP+QTG+KA+D++VPIG+GQRELIIGDRQTGK+++A+D
Sbjct: 124 DAAGRSRAQVKAPGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALD 183
Query: 182 IIINQK--------NKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSAS 233
I+NQK +K + C+YVA+GQK S++ + LE++ AM Y+IIVAATAS++A
Sbjct: 184 TILNQKRWNNGSDESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAP 243
Query: 234 MQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYL 293
+Q+++ ++ +IGE+FRD+GK AL+VYDDLSKQAVAYRQ+SLLL+RPPGREAYPGD+FYL
Sbjct: 244 LQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYL 303
Query: 294 HSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQI 353
HSRLLER+A+++ K +GSLTA+P+IETQ GD+SA++PTNVISITDGQI
Sbjct: 304 HSRLLERAAKLSEKE-----------GSGSLTALPVIETQGGDVSAYIPTNVISITDGQI 352
Query: 354 FLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSSDL 413
FL++ LF GIRPAIN G+SVSRVG AAQ+K +K+++ +++ LAQYRE+AAF+QF SDL
Sbjct: 353 FLEAELFYKGIRPAINVGLSVSRVGSAAQVKALKQVAGSLKLFLAQYREVAAFAQFGSDL 412
Query: 414 DLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYK 473
D T++ L RG R+T+LLKQ QYSPL +++A G LD IE+ +I FESS
Sbjct: 413 DASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLS 472
Query: 474 FMKTCQNSILEKIKNVNEFNADIEDSLTTILINFKKSY 511
++K+ N +L +I+ E + ++ SL + +F ++
Sbjct: 473 YLKSNHNELLTEIREKGELSKELLASLKSATESFVATF 510
>pdb|2XND|A Chain A, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|B Chain B, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|C Chain C, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 492
Score = 557 bits (1436), Expect = e-159, Method: Compositional matrix adjust.
Identities = 271/502 (53%), Positives = 369/502 (73%), Gaps = 19/502 (3%)
Query: 20 NNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVFGLALNLERDSIGAVILGKY 79
+ + ++ G+V+S+ DGI +++GL N EM+EF + G++LNLE D++G V+ G
Sbjct: 2 DTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGND 61
Query: 80 EHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISR 139
+ I EGDIVK TG I++VP+G EL GRV++ALG+ IDGKGPI +K + APG+I R
Sbjct: 62 KLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPR 121
Query: 140 QSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKN--------KNV 191
SV EP+QTGIKA+DS+VPIG+GQRELIIGDRQTGK+SIAID IINQK K +
Sbjct: 122 ISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKL 181
Query: 192 TCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRD 251
CIYVAIGQK S++ + L AM YTI+V+ATASD+A +Q+++ YSGC++GEYFRD
Sbjct: 182 YCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRD 241
Query: 252 HGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVEN 311
+GK AL++YDDLSKQAVAYRQ+SLLL+RPPGREAYPGD+FYLHSRLLER+A++N +
Sbjct: 242 NGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAF--- 298
Query: 312 YTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAG 371
GSLTA+P+IETQAGD+SA++PTNVISITDGQIFL++ LF GIRPAIN G
Sbjct: 299 --------GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVG 350
Query: 372 ISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSSDLDLVTRKQLDRGARVTELL 431
+SVSRVG AAQ + +K+++ ++ +LAQYRE+AAF+QF SDLD T++ L RG R+TELL
Sbjct: 351 LSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELL 410
Query: 432 KQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFMKTCQNSILEKIKNVNE 491
KQ QYSP+ + +++A +G+LD +E KI FE++ + + ++L KI+ +
Sbjct: 411 KQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGK 470
Query: 492 FNADIEDSLTTILINFKKSYDA 513
+ + + L I+ NF ++A
Sbjct: 471 ISEESDAKLKEIVTNFLAGFEA 492
>pdb|3OEE|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
Length = 510
Score = 554 bits (1428), Expect = e-158, Method: Compositional matrix adjust.
Identities = 265/518 (51%), Positives = 381/518 (73%), Gaps = 19/518 (3%)
Query: 2 KINASEISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVFG 61
K +E+S+I++E+IK ++ + G+V++V DGI +++GL+N E++EF V G
Sbjct: 4 KAQPTEVSSILEERIKGVSDEANLNETGRVLAVGDGIARVFGLNNIQAEELVEFSSGVKG 63
Query: 62 LALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPI 121
+ALNLE +G V+ G + EG++VK TG I++VP+GP L GRV++ALG+PIDGKGPI
Sbjct: 64 MALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPI 123
Query: 122 KTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAID 181
+ + APG++ R+SV EP+QTG+KA+D++VPIG+GQRELIIGDRQTGK+++A+D
Sbjct: 124 DAAGRSRAQVKAPGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALD 183
Query: 182 IIINQK--------NKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSAS 233
I+NQK +K + C+YVA+GQK S++ + LE++ AM Y+IIVAATAS++A
Sbjct: 184 TILNQKRWNNGSDESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAP 243
Query: 234 MQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYL 293
+Q+++ ++ +IGE+FRD+GK AL+VYDDLSKQAVAYRQ+SLLL+RPPGREAYPGD+FYL
Sbjct: 244 LQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYL 303
Query: 294 HSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQI 353
HSRLLER+A+++ K +GSLTA+P+IETQ GD+SA++PTNVISITDGQI
Sbjct: 304 HSRLLERAAKLSEKE-----------GSGSLTALPVIETQGGDVSAYIPTNVISITDGQI 352
Query: 354 FLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSSDL 413
FL++ LF GIRPAIN G+SVSRVG AAQ+K +K+++ +++ LAQYRE+AA +QF SDL
Sbjct: 353 FLEAELFYKGIRPAINVGLSVSRVGSAAQVKALKQVAGSLKLFLAQYREVAASAQFGSDL 412
Query: 414 DLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYK 473
D T++ L RG R+T+LLKQ QYSPL +++A G LD IE+ +I FESS
Sbjct: 413 DASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLS 472
Query: 474 FMKTCQNSILEKIKNVNEFNADIEDSLTTILINFKKSY 511
++K+ N +L +I+ E + ++ SL + +F ++
Sbjct: 473 YLKSNHNELLTEIREKGELSKELLASLKSATESFVATF 510
>pdb|3OFN|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 510
Score = 554 bits (1428), Expect = e-158, Method: Compositional matrix adjust.
Identities = 265/518 (51%), Positives = 381/518 (73%), Gaps = 19/518 (3%)
Query: 2 KINASEISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVFG 61
K +E+S+I++E+IK ++ + G+V++V DGI +++GL+N E++EF V G
Sbjct: 4 KAQPTEVSSILEERIKGVSDEANLNETGRVLAVGDGIARVFGLNNIQAEELVEFSSGVKG 63
Query: 62 LALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPI 121
+AL LE +G V+ G + EG++VK TG I++VP+GP L GRV++ALG+PIDGKGPI
Sbjct: 64 MALILEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPI 123
Query: 122 KTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAID 181
+ + APG++ R+SV EP+QTG+KA+D++VPIG+GQRELIIGDRQTGK+++A+D
Sbjct: 124 DAAGRSRAQVKAPGILPRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALD 183
Query: 182 IIINQK--------NKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSAS 233
I+NQK +K + C+YVA+GQK S++ + LE++ AM Y+IIVAATAS++A
Sbjct: 184 TILNQKRWNNGSDESKKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAP 243
Query: 234 MQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYL 293
+Q+++ ++ +IGE+FRD+GK AL+VYDDLSKQAVAYRQ+SLLL+RPPGREAYPGD+FYL
Sbjct: 244 LQYLAPFTAASIGEWFRDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYL 303
Query: 294 HSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQI 353
HSRLLER+A+++ K +GSLTA+P+IETQ GD+SA++PTNVISITDGQI
Sbjct: 304 HSRLLERAAKLSEKE-----------GSGSLTALPVIETQGGDVSAYIPTNVISITDGQI 352
Query: 354 FLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSSDL 413
FL++ LF GIRPAIN G+SVSRVG AAQ+K +K+++ +++ LAQYRE+AAF+QF SDL
Sbjct: 353 FLEAELFYKGIRPAINVGLSVSRVGSAAQVKALKQVAGSLKLFLAQYREVAAFAQFGSDL 412
Query: 414 DLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYK 473
D T++ L RG R+T+LLKQ QYSPL +++A G LD IE+ +I FESS
Sbjct: 413 DASTKQTLVRGERLTQLLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLS 472
Query: 474 FMKTCQNSILEKIKNVNEFNADIEDSLTTILINFKKSY 511
++K+ N +L +I+ E + ++ SL + +F ++
Sbjct: 473 YLKSNHNELLTEIREKGELSKELLASLKSATESFVATF 510
>pdb|4B2Q|B Chain B, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|BB Chain b, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 486
Score = 543 bits (1398), Expect = e-154, Method: Compositional matrix adjust.
Identities = 262/502 (52%), Positives = 369/502 (73%), Gaps = 25/502 (4%)
Query: 18 NFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVFGLALNLERDSIGAVILG 77
N N T G+V++V DGI +++GL+N E++EF V G+ALNLE +G V+ G
Sbjct: 2 NLNET------GRVLAVGDGIARVFGLNNIQAEELVEFSSGVKGMALNLEPGQVGIVLFG 55
Query: 78 KYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVI 137
+ EG++VK TG I++VP+GP L GRV++ALG+PIDGKGPI + + APG++
Sbjct: 56 SDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGIL 115
Query: 138 SRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQK--------NK 189
R+SV EP+QTG+KA+D++VPIG+GQRELIIGDRQTGK+++A+D I+NQK +K
Sbjct: 116 PRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESK 175
Query: 190 NVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYF 249
+ C+YVA+GQK S++ + LE++ AM Y+IIVAATAS++A +Q+++ ++ +IGE+F
Sbjct: 176 KLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEWF 235
Query: 250 RDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYV 309
RD+GK AL+VYDDLSKQAVAYRQ+SLLL+RPPGREAYPGD+FYLHSRLLER+A+++ K
Sbjct: 236 RDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSEKE- 294
Query: 310 ENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAIN 369
+GSLTA+P+IETQ GD+SA++PTNVISITDGQIFL++ LF GIRPAIN
Sbjct: 295 ----------GSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAIN 344
Query: 370 AGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSSDLDLVTRKQLDRGARVTE 429
G+SVSRVG AAQ+K +K+++ +++ LAQYRE+AAF+QF SDLD T++ L RG R+T+
Sbjct: 345 VGLSVSRVGSAAQVKALKQVAGSLKLFLAQYREVAAFAQFGSDLDASTKQTLVRGERLTQ 404
Query: 430 LLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFMKTCQNSILEKIKNV 489
LLKQ QYSPL +++A G LD IE+ +I FESS ++K+ N +L +I+
Sbjct: 405 LLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSNHNELLTEIREK 464
Query: 490 NEFNADIEDSLTTILINFKKSY 511
E + ++ SL + +F ++
Sbjct: 465 GELSKELLASLKSATESFVATF 486
>pdb|4B2Q|A Chain A, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|C Chain C, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|AA Chain a, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|CC Chain c, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 485
Score = 542 bits (1397), Expect = e-154, Method: Compositional matrix adjust.
Identities = 262/502 (52%), Positives = 369/502 (73%), Gaps = 25/502 (4%)
Query: 18 NFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVFGLALNLERDSIGAVILG 77
N N T G+V++V DGI +++GL+N E++EF V G+ALNLE +G V+ G
Sbjct: 1 NLNET------GRVLAVGDGIARVFGLNNIQAEELVEFSSGVKGMALNLEPGQVGIVLFG 54
Query: 78 KYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVI 137
+ EG++VK TG I++VP+GP L GRV++ALG+PIDGKGPI + + APG++
Sbjct: 55 SDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGIL 114
Query: 138 SRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQK--------NK 189
R+SV EP+QTG+KA+D++VPIG+GQRELIIGDRQTGK+++A+D I+NQK +K
Sbjct: 115 PRRSVHEPVQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQKRWNNGSDESK 174
Query: 190 NVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYF 249
+ C+YVA+GQK S++ + LE++ AM Y+IIVAATAS++A +Q+++ ++ +IGE+F
Sbjct: 175 KLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEWF 234
Query: 250 RDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYV 309
RD+GK AL+VYDDLSKQAVAYRQ+SLLL+RPPGREAYPGD+FYLHSRLLER+A+++ K
Sbjct: 235 RDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSEKE- 293
Query: 310 ENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAIN 369
+GSLTA+P+IETQ GD+SA++PTNVISITDGQIFL++ LF GIRPAIN
Sbjct: 294 ----------GSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAIN 343
Query: 370 AGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSSDLDLVTRKQLDRGARVTE 429
G+SVSRVG AAQ+K +K+++ +++ LAQYRE+AAF+QF SDLD T++ L RG R+T+
Sbjct: 344 VGLSVSRVGSAAQVKALKQVAGSLKLFLAQYREVAAFAQFGSDLDASTKQTLVRGERLTQ 403
Query: 430 LLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFMKTCQNSILEKIKNV 489
LLKQ QYSPL +++A G LD IE+ +I FESS ++K+ N +L +I+
Sbjct: 404 LLKQNQYSPLATEEQVPLIYAGVNGHLDGIELSRIGEFESSFLSYLKSNHNELLTEIREK 463
Query: 490 NEFNADIEDSLTTILINFKKSY 511
E + ++ SL + +F ++
Sbjct: 464 GELSKELLASLKSATESFVATF 485
>pdb|1OHH|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
Length = 487
Score = 535 bits (1378), Expect = e-152, Method: Compositional matrix adjust.
Identities = 265/498 (53%), Positives = 360/498 (72%), Gaps = 27/498 (5%)
Query: 24 EIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVFGLALNLERDSIGAVILGKYEHIT 83
++ G+V+S+ DGI +++GL N EM+EF + G++LNLE D++G V+ G + I
Sbjct: 1 DLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIK 60
Query: 84 EGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVS 143
EGDIVK TG I++VP+G EL GRV++ALG+ IDGKGPI +K + APG+I R SV
Sbjct: 61 EGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVR 120
Query: 144 EPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKN--------KNVTCIY 195
EP+QTGIKA+DS+VPIG+GQRELIIGDRQTGK+SIAID IINQK K + CIY
Sbjct: 121 EPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIY 180
Query: 196 VAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKD 255
VAIGQK S++ + L AM YTI+V+ATASD+A +Q+++ YSGC++GEYFRD+GK
Sbjct: 181 VAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKH 240
Query: 256 ALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNG 315
AL++YDDLSKQAVAYRQ+SLLL+RPPGREAYPGD+FYLHSRLLER+A++N +
Sbjct: 241 ALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAF------- 293
Query: 316 KVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVS 375
GSLTA+P+IETQAGD+SA++PTNVISITDGQIFL++ LF GIRPAIN G+SVS
Sbjct: 294 ----GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVS 349
Query: 376 RVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSSDLDLVTRKQLDRGARVTELLKQKQ 435
RVG AAQ + +K+++ ++ +LAQYRE+A LD T++ L RG R+TELLKQ Q
Sbjct: 350 RVGSAAQTRAMKQVAGTMKLELAQYREVA--------LDAATQQLLSRGVRLTELLKQGQ 401
Query: 436 YSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFMKTCQNSILEKIKNVNEFNAD 495
YSP+ + +++A +G+LD +E KI FE++ + + ++L KI+ + + +
Sbjct: 402 YSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGKISEE 461
Query: 496 IEDSLTTILINFKKSYDA 513
+ L I+ NF ++A
Sbjct: 462 SDAKLKEIVTNFLAGFEA 479
>pdb|1FX0|A Chain A, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|A Chain A, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 507
Score = 533 bits (1374), Expect = e-152, Method: Compositional matrix adjust.
Identities = 257/495 (51%), Positives = 353/495 (71%), Gaps = 11/495 (2%)
Query: 3 INASEISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVFGL 62
I A EIS II+E+I+ +N ++ N G V+ V DGI +I+GL M GE++EF G+
Sbjct: 4 IRADEISKIIRERIEGYNREVKVVNTGTVLQVGDGIARIHGLDEVMAGELVEFEEGTIGI 63
Query: 63 ALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIK 122
ALNLE +++G V++G I EG VK TGRI ++P+ GRVINAL PIDG+G I
Sbjct: 64 ALNLESNNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEIT 123
Query: 123 TKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDI 182
+ IE APG++SR+SV EPLQTG+ AID+++P+G+GQRELIIGDRQTGK+++A D
Sbjct: 124 ASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAMIPVGRGQRELIIGDRQTGKTAVATDT 183
Query: 183 IINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSG 242
I+NQ+ +NV C+YVAIGQK SS+ + ++ GAM YTI+VA TA A++Q+++ Y+G
Sbjct: 184 ILNQQGQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYTG 243
Query: 243 CTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSA 302
+ EYF + L++YDDLSKQA AYRQ+SLLL+RPPGREAYPGD+FYLHSRLLER+A
Sbjct: 244 AALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAA 303
Query: 303 RVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNS 362
+++ + G+ GS+TA+PI+ETQAGD+SA++PTNVISITDGQIFL + LFN+
Sbjct: 304 KLS----------SLLGE-GSMTALPIVETQAGDVSAYIPTNVISITDGQIFLSADLFNA 352
Query: 363 GIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSSDLDLVTRKQLD 422
GIRPAIN GISVSRVG AAQIK +KK++ ++ +LAQ+ EL AF+QF+SDLD T+ QL
Sbjct: 353 GIRPAINVGISVSRVGSAAQIKAMKKVAGKLKLELAQFAELEAFAQFASDLDKATQNQLA 412
Query: 423 RGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFMKTCQNSI 482
RG R+ ELLKQ Q +PL V + ++ G+LD +E+ ++ + L ++KT +
Sbjct: 413 RGQRLRELLKQPQSAPLTVEEQVMTIYTGTNGYLDSLELDQVRKYLVELRTYVKTNKPEF 472
Query: 483 LEKIKNVNEFNADIE 497
E I + F + E
Sbjct: 473 QEIISSTKTFTEEAE 487
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
pdb|2F43|B Chain B, Rat Liver F1-atpase
Length = 479
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 149/327 (45%), Gaps = 23/327 (7%)
Query: 59 VFGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGK 118
V +A +L ++ + + E + G V +G +++P+GPE GR++N +G+PID +
Sbjct: 46 VLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDER 105
Query: 119 GPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSI 178
GPIKTK API AP I E L TGIK +D + P KG + + G GK+ +
Sbjct: 106 GPIKTKQFAPIHAEAPEFIEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVL 165
Query: 179 AIDIIIN-QKNKNVTCIYVAIGQKISSIKKTANLLEKYG------AMPYTIIVAATASDS 231
+++I N K ++ +G++ + + + G A +V ++
Sbjct: 166 IMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEP 225
Query: 232 ASMQFISAYSGCTIGEYFRDH-GKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDI 290
+ A +G T+ EYFRD G+D L+ D++ + A ++S LL R P Y +
Sbjct: 226 PGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTL 285
Query: 291 FYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITD 350
+ ER T K GS+T++ I A D++ P + D
Sbjct: 286 ATDMGTMQERI---------------TTTKKGSITSVQAIYVPADDLTDPAPATTFAHLD 330
Query: 351 GQIFLDSSLFNSGIRPAINAGISVSRV 377
L ++ GI PA++ S SR+
Sbjct: 331 ATTVLSRAIAELGIYPAVDPLDSTSRI 357
>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|E Chain E, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|F Chain F, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 511
Score = 115 bits (289), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 108/422 (25%), Positives = 189/422 (44%), Gaps = 43/422 (10%)
Query: 2 KINASEISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIY-------GLSNAM-----Q 49
K +A +ST + + + +T I GKV +V I ++ + NA+ Q
Sbjct: 19 KQSAPLLSTSWKRCMASAAQSTPI--TGKVTAVIGAIVDVHFEQSELPAILNALEIKTPQ 76
Query: 50 GEMLEFPGNVFGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVIN 109
G++ V +A +L +++ + + E + G+ V TG + VP+G E GR+IN
Sbjct: 77 GKL------VLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPVGRETLGRIIN 130
Query: 110 ALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIG 169
+G+PID +GPIK+KL PI P + + +E L+TGIK +D + P +G + + G
Sbjct: 131 VIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDLLAPYARGGKIGLFG 190
Query: 170 DRQTGKSSIAIDIIIN-QKNKNVTCIYVAIGQKISSIKKTANLLEKYGAM-----PYTII 223
GK+ ++I N K ++ +G++ +++ G + +
Sbjct: 191 GAGVGKTVFIQELINNIAKAHGGFSVFTGVGERTREGNDLYREMKETGVINLEGESKVAL 250
Query: 224 VAATASDSASMQFISAYSGCTIGEYFRD-HGKDALVVYDDLSKQAVAYRQISLLLKRPPG 282
V ++ + A +G TI EYFRD G+D L+ D++ + A ++S LL R P
Sbjct: 251 VFGQMNEPPGARARVALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPS 310
Query: 283 REAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVP 342
Y + L ER T K GS+T++ + A D++ P
Sbjct: 311 AVGYQPTLATDMGLLQERI---------------TTTKKGSVTSVQAVYVPADDLTDPAP 355
Query: 343 TNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQI-KFIKKLSSNIRTDLAQYR 401
+ D L + GI PA++ S SR+ AA + + ++S ++ L Y+
Sbjct: 356 ATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAVVGQEHYDVASKVQETLQTYK 415
Query: 402 EL 403
L
Sbjct: 416 SL 417
>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|E Chain E, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|F Chain F, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|M Chain M, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|N Chain N, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|O Chain O, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|V Chain V, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|W Chain W, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|X Chain X, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3OE7|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEE|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OFN|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 484
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 102/395 (25%), Positives = 177/395 (44%), Gaps = 41/395 (10%)
Query: 29 GKVISVFDGICQIY-------GLSNAM-----QGEMLEFPGNVFGLALNLERDSIGAVIL 76
GKV +V I ++ + NA+ QG++ V +A +L +++ + +
Sbjct: 17 GKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKL------VLEVAQHLGENTVRTIAM 70
Query: 77 GKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGV 136
E + G+ V TG + VP+G E GR+IN +G+PID +GPIK+KL PI P
Sbjct: 71 DGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSF 130
Query: 137 ISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIIN-QKNKNVTCIY 195
+ + +E L+TGIK +D + P +G + + G GK+ ++I N K ++
Sbjct: 131 AEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVF 190
Query: 196 VAIGQKISSIKKTANLLEKYGAM-----PYTIIVAATASDSASMQFISAYSGCTIGEYFR 250
+G++ +++ G + +V ++ + A +G TI EYFR
Sbjct: 191 TGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFR 250
Query: 251 D-HGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYV 309
D G+D L+ D++ + A ++S LL R P Y + L ER
Sbjct: 251 DEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERI-------- 302
Query: 310 ENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAIN 369
T K GS+T++ + A D++ P + D L + GI PA++
Sbjct: 303 -------TTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVD 355
Query: 370 AGISVSRVGGAAQI-KFIKKLSSNIRTDLAQYREL 403
S SR+ AA + + ++S ++ L Y+ L
Sbjct: 356 PLDSKSRLLDAAVVGQEHYDVASKVQETLQTYKSL 390
>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|E Chain E, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|F Chain F, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|M Chain M, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|N Chain N, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|O Chain O, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|V Chain V, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|W Chain W, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|X Chain X, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2WPD|D Chain D, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|E Chain E, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|F Chain F, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3ZRY|D Chain D, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|E Chain E, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|F Chain F, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|D Chain D, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|E Chain E, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|F Chain F, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|N Chain N, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|O Chain O, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|P Chain P, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 478
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 102/395 (25%), Positives = 177/395 (44%), Gaps = 41/395 (10%)
Query: 29 GKVISVFDGICQIY-------GLSNAM-----QGEMLEFPGNVFGLALNLERDSIGAVIL 76
GKV +V I ++ + NA+ QG++ V +A +L +++ + +
Sbjct: 11 GKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKL------VLEVAQHLGENTVRTIAM 64
Query: 77 GKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGV 136
E + G+ V TG + VP+G E GR+IN +G+PID +GPIK+KL PI P
Sbjct: 65 DGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSF 124
Query: 137 ISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIIN-QKNKNVTCIY 195
+ + +E L+TGIK +D + P +G + + G GK+ ++I N K ++
Sbjct: 125 AEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVF 184
Query: 196 VAIGQKISSIKKTANLLEKYGAM-----PYTIIVAATASDSASMQFISAYSGCTIGEYFR 250
+G++ +++ G + +V ++ + A +G TI EYFR
Sbjct: 185 TGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFR 244
Query: 251 D-HGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYV 309
D G+D L+ D++ + A ++S LL R P Y + L ER
Sbjct: 245 DEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERI-------- 296
Query: 310 ENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAIN 369
T K GS+T++ + A D++ P + D L + GI PA++
Sbjct: 297 -------TTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVD 349
Query: 370 AGISVSRVGGAAQI-KFIKKLSSNIRTDLAQYREL 403
S SR+ AA + + ++S ++ L Y+ L
Sbjct: 350 PLDSKSRLLDAAVVGQEHYDVASKVQETLQTYKSL 384
>pdb|4B2Q|D Chain D, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|DD Chain d, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 470
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 102/395 (25%), Positives = 177/395 (44%), Gaps = 41/395 (10%)
Query: 29 GKVISVFDGICQIY-------GLSNAM-----QGEMLEFPGNVFGLALNLERDSIGAVIL 76
GKV +V I ++ + NA+ QG++ V +A +L +++ + +
Sbjct: 6 GKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKL------VLEVAQHLGENTVRTIAM 59
Query: 77 GKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGV 136
E + G+ V TG + VP+G E GR+IN +G+PID +GPIK+KL PI P
Sbjct: 60 DGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSF 119
Query: 137 ISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIIN-QKNKNVTCIY 195
+ + +E L+TGIK +D + P +G + + G GK+ ++I N K ++
Sbjct: 120 AEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVF 179
Query: 196 VAIGQKISSIKKTANLLEKYGAM-----PYTIIVAATASDSASMQFISAYSGCTIGEYFR 250
+G++ +++ G + +V ++ + A +G TI EYFR
Sbjct: 180 TGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFR 239
Query: 251 D-HGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYV 309
D G+D L+ D++ + A ++S LL R P Y + L ER
Sbjct: 240 DEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERI-------- 291
Query: 310 ENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAIN 369
T K GS+T++ + A D++ P + D L + GI PA++
Sbjct: 292 -------TTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVD 344
Query: 370 AGISVSRVGGAAQI-KFIKKLSSNIRTDLAQYREL 403
S SR+ AA + + ++S ++ L Y+ L
Sbjct: 345 PLDSKSRLLDAAVVGQEHYDVASKVQETLQTYKSL 379
>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
Length = 484
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 102/395 (25%), Positives = 177/395 (44%), Gaps = 41/395 (10%)
Query: 29 GKVISVFDGICQIY-------GLSNAM-----QGEMLEFPGNVFGLALNLERDSIGAVIL 76
GKV +V I ++ + NA+ QG++ V +A +L +++ + +
Sbjct: 17 GKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKL------VLEVAQHLGENTVRTIAM 70
Query: 77 GKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGV 136
E + G+ V TG + VP+G E GR+IN +G+PID +GPIK+KL PI P
Sbjct: 71 DGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSF 130
Query: 137 ISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIIN-QKNKNVTCIY 195
+ + +E L+TGIK +D + P +G + + G GK+ ++I N K ++
Sbjct: 131 AEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVF 190
Query: 196 VAIGQKISSIKKTANLLEKYGAM-----PYTIIVAATASDSASMQFISAYSGCTIGEYFR 250
+G++ +++ G + +V ++ + A +G TI EYFR
Sbjct: 191 TGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFR 250
Query: 251 D-HGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYV 309
D G+D L+ D++ + A ++S LL R P Y + L ER
Sbjct: 251 DEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAFGYQPTLATDMGLLQERI-------- 302
Query: 310 ENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAIN 369
T K GS+T++ + A D++ P + D L + GI PA++
Sbjct: 303 -------TTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVD 355
Query: 370 AGISVSRVGGAAQI-KFIKKLSSNIRTDLAQYREL 403
S SR+ AA + + ++S ++ L Y+ L
Sbjct: 356 PLDSKSRLLDAAVVGQEHYDVASKVQETLQTYKSL 390
>pdb|4B2Q|E Chain E, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|F Chain F, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|EE Chain e, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|FF Chain f, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 473
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 102/395 (25%), Positives = 177/395 (44%), Gaps = 41/395 (10%)
Query: 29 GKVISVFDGICQIY-------GLSNAM-----QGEMLEFPGNVFGLALNLERDSIGAVIL 76
GKV +V I ++ + NA+ QG++ V +A +L +++ + +
Sbjct: 6 GKVTAVIGAIVDVHFEQSELPAILNALEIKTPQGKL------VLEVAQHLGENTVRTIAM 59
Query: 77 GKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGV 136
E + G+ V TG + VP+G E GR+IN +G+PID +GPIK+KL PI P
Sbjct: 60 DGTEGLVRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSF 119
Query: 137 ISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIIN-QKNKNVTCIY 195
+ + +E L+TGIK +D + P +G + + G GK+ ++I N K ++
Sbjct: 120 AEQSTSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVF 179
Query: 196 VAIGQKISSIKKTANLLEKYGAM-----PYTIIVAATASDSASMQFISAYSGCTIGEYFR 250
+G++ +++ G + +V ++ + A +G TI EYFR
Sbjct: 180 TGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFR 239
Query: 251 D-HGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYV 309
D G+D L+ D++ + A ++S LL R P Y + L ER
Sbjct: 240 DEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERI-------- 291
Query: 310 ENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAIN 369
T K GS+T++ + A D++ P + D L + GI PA++
Sbjct: 292 -------TTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVD 344
Query: 370 AGISVSRVGGAAQI-KFIKKLSSNIRTDLAQYREL 403
S SR+ AA + + ++S ++ L Y+ L
Sbjct: 345 PLDSKSRLLDAAVVGQEHYDVASKVQETLQTYKSL 379
>pdb|2DPY|A Chain A, Crystal Structure Of The Flagellar Type Iii Atpase Flii
pdb|2DPY|B Chain B, Crystal Structure Of The Flagellar Type Iii Atpase Flii
Length = 438
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 93/346 (26%), Positives = 166/346 (47%), Gaps = 28/346 (8%)
Query: 96 EVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDS 155
++P+GP L GRV++ G P+DG T T + + R + L TG++AI++
Sbjct: 91 QLPLGPALLGRVLDGGGKPLDGLPAPDTLETGALITPPFNPLQRTPIEHVLDTGVRAINA 150
Query: 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKK-TANLLEK 214
++ +G+GQR + GKS + + ++ +V + + IG++ +K N+L
Sbjct: 151 LLTVGRGQRMGLFAGSGVGKS-VLLGMMARYTRADVIVVGL-IGERGREVKDFIENILGP 208
Query: 215 YGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQIS 274
G ++++AA A S ++ A I E FRD G+ L++ D L++ A+A R+I+
Sbjct: 209 DGRA-RSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIA 267
Query: 275 LLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQA 334
L + PP + YP +F L+ER+ NG G GS+TA + T+
Sbjct: 268 LAIGEPPATKGYPPSVFAKLPALVERAG-----------NGIHGG--GSITAFYTVLTEG 314
Query: 335 GDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGA-------AQIKFIK 387
D + + +I DG I L L +G PAI+ S+SR A A+++ K
Sbjct: 315 DDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALITEQHYARVRLFK 374
Query: 388 KLSSNIRTDLAQYRELAAFSQFSSDLDLVTRKQLDRGARVTELLKQ 433
+L S+ + + R+L + ++ D + K + ++ L+Q
Sbjct: 375 QLLSSFQRN----RDLVSVGAYAKGSDPMLDKAITLWPQLEAFLQQ 416
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 147/327 (44%), Gaps = 23/327 (7%)
Query: 59 VFGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGK 118
V +A +L ++ + + E + G V +G + +P+GPE GR++N +G+PID +
Sbjct: 50 VLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDER 109
Query: 119 GPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSI 178
GPIKTK A I AP + E L TGIK +D + P KG + + G GK+ +
Sbjct: 110 GPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVL 169
Query: 179 AIDIIIN-QKNKNVTCIYVAIGQKISSIKKTANLLEKYG------AMPYTIIVAATASDS 231
+++I N K ++ +G++ + + + G A +V ++
Sbjct: 170 IMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEP 229
Query: 232 ASMQFISAYSGCTIGEYFRDH-GKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDI 290
+ A +G T+ EYFRD G+D L+ D++ + A ++S LL R P Y +
Sbjct: 230 PGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTL 289
Query: 291 FYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITD 350
+ ER T K GS+T++ I A D++ P + D
Sbjct: 290 ATDMGTMQERI---------------TTTKKGSITSVQAIXVPADDLTDPAPATTFAHLD 334
Query: 351 GQIFLDSSLFNSGIRPAINAGISVSRV 377
L ++ GI PA++ S SR+
Sbjct: 335 ATTVLSRAIAELGIYPAVDPLDSTSRI 361
>pdb|2XND|D Chain D, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|E Chain E, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|F Chain F, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 467
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 147/327 (44%), Gaps = 23/327 (7%)
Query: 59 VFGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGK 118
V +A +L ++ + + E + G V +G + +P+GPE GR++N +G+PID +
Sbjct: 38 VLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDER 97
Query: 119 GPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSI 178
GPIKTK A I AP + E L TGIK +D + P KG + + G GK+ +
Sbjct: 98 GPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVL 157
Query: 179 AIDIIIN-QKNKNVTCIYVAIGQKISSIKKTANLLEKYG------AMPYTIIVAATASDS 231
+++I N K ++ +G++ + + + G A +V ++
Sbjct: 158 IMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEP 217
Query: 232 ASMQFISAYSGCTIGEYFRDH-GKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDI 290
+ A +G T+ EYFRD G+D L+ D++ + A ++S LL R P Y +
Sbjct: 218 PGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTL 277
Query: 291 FYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITD 350
+ ER T K GS+T++ I A D++ P + D
Sbjct: 278 ATDMGTMQERI---------------TTTKKGSITSVQAIYVPADDLTDPAPATTFAHLD 322
Query: 351 GQIFLDSSLFNSGIRPAINAGISVSRV 377
L ++ GI PA++ S SR+
Sbjct: 323 ATTVLSRAIAELGIYPAVDPLDSTSRI 349
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 147/327 (44%), Gaps = 23/327 (7%)
Query: 59 VFGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGK 118
V +A +L ++ + + E + G V +G + +P+GPE GR++N +G+PID +
Sbjct: 50 VLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDER 109
Query: 119 GPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSI 178
GPIKTK A I AP + E L TGIK +D + P KG + + G GK+ +
Sbjct: 110 GPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVL 169
Query: 179 AIDIIIN-QKNKNVTCIYVAIGQKISSIKKTANLLEKYG------AMPYTIIVAATASDS 231
+++I N K ++ +G++ + + + G A +V ++
Sbjct: 170 IMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEP 229
Query: 232 ASMQFISAYSGCTIGEYFRDH-GKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDI 290
+ A +G T+ EYFRD G+D L+ D++ + A ++S LL R P Y +
Sbjct: 230 PGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTL 289
Query: 291 FYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITD 350
+ ER T K GS+T++ I A D++ P + D
Sbjct: 290 ATDMGTMQERI---------------TTTKKGSITSVQAIYVPADDLTDPAPATTFAHLD 334
Query: 351 GQIFLDSSLFNSGIRPAINAGISVSRV 377
L ++ GI PA++ S SR+
Sbjct: 335 ATTVLSRAIAELGIYPAVDPLDSTSRI 361
>pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|D Chain D, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|E Chain E, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|F Chain F, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|D Chain D, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|E Chain E, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|F Chain F, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JIZ|D Chain D, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|E Chain E, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|F Chain F, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|K Chain K, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|L Chain L, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|M Chain M, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|D Chain D, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|E Chain E, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|F Chain F, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|K Chain K, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|L Chain L, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|M Chain M, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|D Chain D, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|E Chain E, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|F Chain F, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|K Chain K, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|L Chain L, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|M Chain M, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|D Chain D, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|E Chain E, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|F Chain F, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|D Chain D, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|E Chain E, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|F Chain F, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|M Chain M, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|N Chain N, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|O Chain O, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 147/327 (44%), Gaps = 23/327 (7%)
Query: 59 VFGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGK 118
V +A +L ++ + + E + G V +G + +P+GPE GR++N +G+PID +
Sbjct: 50 VLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDER 109
Query: 119 GPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSI 178
GPIKTK A I AP + E L TGIK +D + P KG + + G GK+ +
Sbjct: 110 GPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVL 169
Query: 179 AIDIIIN-QKNKNVTCIYVAIGQKISSIKKTANLLEKYG------AMPYTIIVAATASDS 231
+++I N K ++ +G++ + + + G A +V ++
Sbjct: 170 IMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEP 229
Query: 232 ASMQFISAYSGCTIGEYFRDH-GKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDI 290
+ A +G T+ EYFRD G+D L+ D++ + A ++S LL R P Y +
Sbjct: 230 PGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTL 289
Query: 291 FYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITD 350
+ ER T K GS+T++ I A D++ P + D
Sbjct: 290 ATDMGTMQERI---------------TTTKKGSITSVQAIYVPADDLTDPAPATTFAHLD 334
Query: 351 GQIFLDSSLFNSGIRPAINAGISVSRV 377
L ++ GI PA++ S SR+
Sbjct: 335 ATTVLSRAIAELGIYPAVDPLDSTSRI 361
>pdb|4ASU|D Chain D, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|E Chain E, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|F Chain F, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 480
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 147/327 (44%), Gaps = 23/327 (7%)
Query: 59 VFGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGK 118
V +A +L ++ + + E + G V +G + +P+GPE GR++N +G+PID +
Sbjct: 48 VLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDER 107
Query: 119 GPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSI 178
GPIKTK A I AP + E L TGIK +D + P KG + + G GK+ +
Sbjct: 108 GPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVL 167
Query: 179 AIDIIIN-QKNKNVTCIYVAIGQKISSIKKTANLLEKYG------AMPYTIIVAATASDS 231
+++I N K ++ +G++ + + + G A +V ++
Sbjct: 168 IMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEP 227
Query: 232 ASMQFISAYSGCTIGEYFRDH-GKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDI 290
+ A +G T+ EYFRD G+D L+ D++ + A ++S LL R P Y +
Sbjct: 228 PGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTL 287
Query: 291 FYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITD 350
+ ER T K GS+T++ I A D++ P + D
Sbjct: 288 ATDMGTMQERI---------------TTTKKGSITSVQAIYVPADDLTDPAPATTFAHLD 332
Query: 351 GQIFLDSSLFNSGIRPAINAGISVSRV 377
L ++ GI PA++ S SR+
Sbjct: 333 ATTVLSRAIAELGIYPAVDPLDSTSRI 359
>pdb|2W6E|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 528
Score = 112 bits (280), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 147/327 (44%), Gaps = 23/327 (7%)
Query: 59 VFGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGK 118
V +A +L ++ + + E + G V +G + +P+GPE GR++N +G+PID +
Sbjct: 96 VLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDER 155
Query: 119 GPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSI 178
GPIKTK A I AP + E L TGIK +D + P KG + + G GK+ +
Sbjct: 156 GPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVL 215
Query: 179 AIDIIIN-QKNKNVTCIYVAIGQKISSIKKTANLLEKYG------AMPYTIIVAATASDS 231
+++I N K ++ +G++ + + + G A +V ++
Sbjct: 216 IMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEP 275
Query: 232 ASMQFISAYSGCTIGEYFRDH-GKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDI 290
+ A +G T+ EYFRD G+D L+ D++ + A ++S LL R P Y +
Sbjct: 276 PGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTL 335
Query: 291 FYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITD 350
+ ER T K GS+T++ I A D++ P + D
Sbjct: 336 ATDMGTMQERI---------------TTTKKGSITSVQAIYVPADDLTDPAPATTFAHLD 380
Query: 351 GQIFLDSSLFNSGIRPAINAGISVSRV 377
L ++ GI PA++ S SR+
Sbjct: 381 ATTVLSRAIAELGIYPAVDPLDSTSRI 407
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 111 bits (278), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 95/370 (25%), Positives = 162/370 (43%), Gaps = 44/370 (11%)
Query: 27 NQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVFGLALNLERDSIGAVILGKYEHITEGD 86
N+G++I V + I Q E + P +++ A+ +ER G + + H+ + +
Sbjct: 2 NKGRIIQVMGPVVDI-------QFESGQLP-DIYN-AITIERPQGGTLTVEAAVHLGD-N 51
Query: 87 IVKC-----------------TGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPI 129
+V+C TG + VP+G GRV N LG+PID +G + + PI
Sbjct: 52 VVRCVAMASTDGLVRGLEAVDTGAPISVPVGKATLGRVFNVLGEPIDEQGEVNAEERHPI 111
Query: 130 EKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIIN-QKN 188
+ AP + E L+TGIK ID + P KG + + G GK+ + ++I N +
Sbjct: 112 HRPAPEFEELSTADEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAQE 171
Query: 189 KNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEY 248
++ +G++ + ++ G + T +V ++ + A +G T+ EY
Sbjct: 172 HGGLSVFAGVGERTREGNDLYHEMKDSGVISKTSMVFGQMNEPPGARLRVALTGLTMAEY 231
Query: 249 FRD-HGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIK 307
FRD G+D L+ D++ + A ++S LL R P Y + +L ER
Sbjct: 232 FRDREGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERI------ 285
Query: 308 YVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPA 367
+ K GS+T+I I A D + P + D L+ L GI PA
Sbjct: 286 ---------TSTKKGSITSIQAIYVPADDYTDPAPATTFAHLDATTNLERKLAEMGIYPA 336
Query: 368 INAGISVSRV 377
++ S SR+
Sbjct: 337 VDPLASTSRI 346
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 104/405 (25%), Positives = 178/405 (43%), Gaps = 44/405 (10%)
Query: 62 LALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPI 121
+AL+L D++ + + + + G V TG + VP+G GRV N LG+PID +G I
Sbjct: 50 VALHLGDDTVRTIAMASTDGLIRGMEVIDTGAPISVPVGQVTLGRVFNVLGEPIDLEGDI 109
Query: 122 KTKLTA-PIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAI 180
PI + AP + E L+TGIK +D + P KG + + G GK+ +
Sbjct: 110 PADARRDPIHRPAPKFEELATEVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQ 169
Query: 181 DIIIN--QKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFIS 238
++I N Q++ ++ ++ +G++ + ++ G + T +V ++ +
Sbjct: 170 ELIHNIAQEHGGIS-VFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRV 228
Query: 239 AYSGCTIGEYFRD-HGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRL 297
A +G T+ EYFRD G+D L+ D++ + A ++S LL R P Y + +L
Sbjct: 229 ALTGLTMAEYFRDEQGQDGLLFIDNIFRFTQAGSEVSALLGRMPSAIGYQPTLATEMGQL 288
Query: 298 LERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDS 357
ER + GS+T+I I A D + P S D L+
Sbjct: 289 QERI---------------TSTAKGSITSIQAIYVPADDYTDPAPATTFSHLDATTNLER 333
Query: 358 SLFNSGIRPAINAGISVSR-----VGGAAQIKFIKKLSSNIRTDLAQYRELA------AF 406
L GI PA++ +S SR + G + +K ++ L +Y+EL
Sbjct: 334 KLAEMGIYPAVDPLVSTSRALAPEIVGEEHYQVARK----VQQTLERYKELQDIIAILGM 389
Query: 407 SQFSSDLDLVTRKQLDRGARVTELLKQ-----KQYSPLPVSLIAV 446
+ S + LV + R R+ L Q +Q++ P S + V
Sbjct: 390 DELSDEDKLV----VHRARRIQFFLSQNFHVAEQFTGQPGSYVPV 430
>pdb|2OBL|A Chain A, Structural And Biochemical Analysis Of A Prototypical
Atpase From The Type Iii Secretion System Of Pathogenic
Bacteria
pdb|2OBM|A Chain A, Structural And Biochemical Analysis Of A Prototypical
Atpase From The Type Iii Secretion System Of Pathogenic
Bacteria
Length = 347
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 137/284 (48%), Gaps = 27/284 (9%)
Query: 99 IGPELCGRVINALGDPIDGK-----GPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAI 153
+G L GR+I+ +G P++ P + L A P + RQ + +P G++AI
Sbjct: 7 VGDALLGRLIDGIGRPMESNIVAPYLPFERSLYAE----PPDPLLRQVIDQPFILGVRAI 62
Query: 154 DSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLE 213
D ++ G GQR I GKS++ + +I N + ++ + + IG++ + + LL
Sbjct: 63 DGLLTCGIGQRIGIFAGSGVGKSTL-LGMICNGASADIIVLAL-IGERGREVNEFLALLP 120
Query: 214 KYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQI 273
+ + ++V T+ A + +A++ TI EYFRD GK+ L++ D +++ A A R +
Sbjct: 121 Q-STLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDV 179
Query: 274 SLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQ 333
L P R +P +F +LLER+ GS+TAI + +
Sbjct: 180 GLASGEPDVRGGFPPSVFSSLPKLLERAG---------------PAPKGSITAIYTVLLE 224
Query: 334 AGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRV 377
+ +++ + V SI DG I L L PAI+ G+S SRV
Sbjct: 225 SDNVNDPIGDEVRSILDGHIVLTRELAEENHFPAIDIGLSASRV 268
>pdb|3TIV|A Chain A, Crystal Structure Of Subunit B Mutant N157a Of The A1ao
Atp Synthase
pdb|3TIV|B Chain B, Crystal Structure Of Subunit B Mutant N157a Of The A1ao
Atp Synthase
Length = 460
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 89/323 (27%), Positives = 138/323 (42%), Gaps = 23/323 (7%)
Query: 91 TGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGI 150
TG L++P +L GR+++ G+P DG I I A +R + +QTGI
Sbjct: 72 TGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGI 131
Query: 151 KAIDSIVPIGKGQRELIIGDRQTGKSSIAIDII----INQKNKNVTCIYVAIGQKISSIK 206
ID + +GQ+ I + IA+ I + ++ A+G +
Sbjct: 132 STIDGTNTLVRGQKLPIFSASGLPHAEIALQIARQASVPGSESAFAVVFAAMGITNEEAQ 191
Query: 207 KTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFR-DHGKDALVVYDDLSK 265
+ EK GA+ ++ A D A + ++ T EY +HG LV+ D++
Sbjct: 192 YFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITN 251
Query: 266 QAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLT 325
A A RQ+ PGR YPG ++ + L ER+ G V G GS+T
Sbjct: 252 YAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERA-------------GIVKGAKGSVT 298
Query: 326 AIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSR-----VGGA 380
IPI+ DI+ +P IT+GQI + L GI P IN S+SR +G
Sbjct: 299 QIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAG 358
Query: 381 AQIKFIKKLSSNIRTDLAQYREL 403
+ K +S + A+ R+L
Sbjct: 359 KTREDHKAVSDQMYAGYAEGRDL 381
>pdb|3SSA|A Chain A, Crystal Structure Of Subunit B Mutant N157t Of The A1ao
Atp Synthase
pdb|3SSA|B Chain B, Crystal Structure Of Subunit B Mutant N157t Of The A1ao
Atp Synthase
Length = 460
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 89/323 (27%), Positives = 138/323 (42%), Gaps = 23/323 (7%)
Query: 91 TGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGI 150
TG L++P +L GR+++ G+P DG I I A +R + +QTGI
Sbjct: 72 TGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGI 131
Query: 151 KAIDSIVPIGKGQRELIIGDRQTGKSSIAIDII----INQKNKNVTCIYVAIGQKISSIK 206
ID + +GQ+ I + IA+ I + ++ A+G +
Sbjct: 132 STIDGTNTLVRGQKLPIFSASGLPHTEIALQIARQASVPGSESAFAVVFAAMGITNEEAQ 191
Query: 207 KTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFR-DHGKDALVVYDDLSK 265
+ EK GA+ ++ A D A + ++ T EY +HG LV+ D++
Sbjct: 192 YFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITN 251
Query: 266 QAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLT 325
A A RQ+ PGR YPG ++ + L ER+ G V G GS+T
Sbjct: 252 YAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERA-------------GIVKGAKGSVT 298
Query: 326 AIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSR-----VGGA 380
IPI+ DI+ +P IT+GQI + L GI P IN S+SR +G
Sbjct: 299 QIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAG 358
Query: 381 AQIKFIKKLSSNIRTDLAQYREL 403
+ K +S + A+ R+L
Sbjct: 359 KTREDHKAVSDQMYAGYAEGRDL 381
>pdb|2RKW|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|2RKW|B Chain B, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3B2Q|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3B2Q|B Chain B, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3EIU|A Chain A, A Second Transient Position Of Atp On Its Trail To The
Nucleotide- Binding Site Of Subunit B Of The Motor
Protein A1ao Atp Synthase
pdb|3EIU|B Chain B, A Second Transient Position Of Atp On Its Trail To The
Nucleotide- Binding Site Of Subunit B Of The Motor
Protein A1ao Atp Synthase
Length = 469
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 89/323 (27%), Positives = 138/323 (42%), Gaps = 23/323 (7%)
Query: 91 TGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGI 150
TG L++P +L GR+++ G+P DG I I A +R + +QTGI
Sbjct: 81 TGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGI 140
Query: 151 KAIDSIVPIGKGQRELIIGDRQTGKSSIAIDII----INQKNKNVTCIYVAIGQKISSIK 206
ID + +GQ+ I + IA+ I + ++ A+G +
Sbjct: 141 STIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQ 200
Query: 207 KTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFR-DHGKDALVVYDDLSK 265
+ EK GA+ ++ A D A + ++ T EY +HG LV+ D++
Sbjct: 201 YFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITN 260
Query: 266 QAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLT 325
A A RQ+ PGR YPG ++ + L ER+ G V G GS+T
Sbjct: 261 YAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERA-------------GIVKGAKGSVT 307
Query: 326 AIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSR-----VGGA 380
IPI+ DI+ +P IT+GQI + L GI P IN S+SR +G
Sbjct: 308 QIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAG 367
Query: 381 AQIKFIKKLSSNIRTDLAQYREL 403
+ K +S + A+ R+L
Sbjct: 368 KTREDHKAVSDQMYAGYAEGRDL 390
>pdb|2C61|A Chain A, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type
Atpase From M. Mazei Go1
pdb|2C61|B Chain B, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type
Atpase From M. Mazei Go1
pdb|3DSR|A Chain A, Adp In Transition Binding Site In The Subunit B Of The
Energy Converter A1ao Atp Synthase
pdb|3DSR|B Chain B, Adp In Transition Binding Site In The Subunit B Of The
Energy Converter A1ao Atp Synthase
Length = 469
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 89/323 (27%), Positives = 138/323 (42%), Gaps = 23/323 (7%)
Query: 91 TGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGI 150
TG L++P +L GR+++ G+P DG I I A +R + +QTGI
Sbjct: 81 TGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGI 140
Query: 151 KAIDSIVPIGKGQRELIIGDRQTGKSSIAIDII----INQKNKNVTCIYVAIGQKISSIK 206
ID + +GQ+ I + IA+ I + ++ A+G +
Sbjct: 141 STIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQ 200
Query: 207 KTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFR-DHGKDALVVYDDLSK 265
+ EK GA+ ++ A D A + ++ T EY +HG LV+ D++
Sbjct: 201 YFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITN 260
Query: 266 QAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLT 325
A A RQ+ PGR YPG ++ + L ER+ G V G GS+T
Sbjct: 261 YAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERA-------------GIVKGAKGSVT 307
Query: 326 AIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSR-----VGGA 380
IPI+ DI+ +P IT+GQI + L GI P IN S+SR +G
Sbjct: 308 QIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAG 367
Query: 381 AQIKFIKKLSSNIRTDLAQYREL 403
+ K +S + A+ R+L
Sbjct: 368 KTREDHKAVSDQMYAGYAEGRDL 390
>pdb|3TGW|A Chain A, Crystal Structure Of Subunit B Mutant H156a Of The A1ao
Atp Synthase
pdb|3TGW|B Chain B, Crystal Structure Of Subunit B Mutant H156a Of The A1ao
Atp Synthase
Length = 460
Score = 105 bits (263), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 89/323 (27%), Positives = 138/323 (42%), Gaps = 23/323 (7%)
Query: 91 TGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGI 150
TG L++P +L GR+++ G+P DG I I A +R + +QTGI
Sbjct: 72 TGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGI 131
Query: 151 KAIDSIVPIGKGQRELIIGDRQTGKSSIAIDII----INQKNKNVTCIYVAIGQKISSIK 206
ID + +GQ+ I + IA+ I + ++ A+G +
Sbjct: 132 STIDGTNTLVRGQKLPIFSASGLPANEIALQIARQASVPGSESAFAVVFAAMGITNEEAQ 191
Query: 207 KTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFR-DHGKDALVVYDDLSK 265
+ EK GA+ ++ A D A + ++ T EY +HG LV+ D++
Sbjct: 192 YFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITN 251
Query: 266 QAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLT 325
A A RQ+ PGR YPG ++ + L ER+ G V G GS+T
Sbjct: 252 YAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERA-------------GIVKGAKGSVT 298
Query: 326 AIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSR-----VGGA 380
IPI+ DI+ +P IT+GQI + L GI P IN S+SR +G
Sbjct: 299 QIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAG 358
Query: 381 AQIKFIKKLSSNIRTDLAQYREL 403
+ K +S + A+ R+L
Sbjct: 359 KTREDHKAVSDQMYAGYAEGRDL 381
>pdb|3GQB|B Chain B, Crystal Structure Of The A3b3 Complex From V-atpase
pdb|3GQB|D Chain D, Crystal Structure Of The A3b3 Complex From V-atpase
Length = 464
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 127/288 (44%), Gaps = 25/288 (8%)
Query: 102 ELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGK 161
E+ GR N +G PIDG PI + PI + ++R+ + +QTGI ID + + +
Sbjct: 87 EMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNTLVR 146
Query: 162 GQRELIIGDRQTGKSSIAIDIIIN-----------QKNKNVTCIYVAIGQKISSIKKTAN 210
GQ+ I + IA I +K + ++ A+G +
Sbjct: 147 GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQ 206
Query: 211 LLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFR-DHGKDALVVYDDLSKQAVA 269
E+ GA+ +++ A D + ++ T+ EY +H LV+ D++ + A
Sbjct: 207 EFERTGALSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTNYSEA 266
Query: 270 YRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPI 329
R+I + PGR YPG ++ + + ER+ G V GK GS+T IPI
Sbjct: 267 LREIGAAREEIPGRRGYPGYMYTDLATIYERA-------------GVVEGKKGSVTQIPI 313
Query: 330 IETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRV 377
+ D + +P IT+GQI L L GI P I+ S+SR+
Sbjct: 314 LSMPDDDRTHPIPDLTGYITEGQIQLSRELHRKGIYPPIDPLPSLSRL 361
>pdb|3VR6|D Chain D, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|E Chain E, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|F Chain F, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
Length = 465
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 132/295 (44%), Gaps = 18/295 (6%)
Query: 88 VKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQ 147
V+ G L++ + ++ GRV + LG P D I + I I+R E +Q
Sbjct: 77 VRFLGHPLQLGVSEDMIGRVFDGLGRPKDNGPEILPEKYLDINGEVINPIARDYPDEFIQ 136
Query: 148 TGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDI----IINQKNKNVTCIYVAIGQKIS 203
TGI AID + + +GQ+ + +A I + + + ++ AIG
Sbjct: 137 TGISAIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFE 196
Query: 204 SIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFR-DHGKDALVVYDD 262
+ + GA+ +++ A+D A + + T EY + G LV+ D
Sbjct: 197 EAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTD 256
Query: 263 LSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTG 322
++ A A R+IS + PGR YPG ++ + L ER+ G++ G G
Sbjct: 257 MTNYAEALREISAARREVPGRRGYPGYLYTNLATLFERA-------------GRIRGLKG 303
Query: 323 SLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRV 377
S+T IPI+ D + +P IT+GQI L L+ SGI+P I+ S+SR+
Sbjct: 304 SVTQIPILTMPEDDKTHPIPDLTGYITEGQIILTRELYKSGIQPPIDVLPSLSRL 358
>pdb|3A5C|D Chain D, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|E Chain E, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|F Chain F, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|L Chain L, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|M Chain M, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|N Chain N, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|D Chain D, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|E Chain E, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|F Chain F, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|L Chain L, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|M Chain M, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|N Chain N, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|D Chain D, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|E Chain E, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|F Chain F, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 478
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 126/288 (43%), Gaps = 25/288 (8%)
Query: 102 ELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGK 161
E+ GR N +G PIDG PI + PI + ++R+ + +QTGI ID + + +
Sbjct: 87 EMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNTLVR 146
Query: 162 GQRELIIGDRQTGKSSIAIDIIIN-----------QKNKNVTCIYVAIGQKISSIKKTAN 210
GQ+ I + IA I +K + ++ A+G +
Sbjct: 147 GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQ 206
Query: 211 LLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFR-DHGKDALVVYDDLSKQAVA 269
E+ GA+ +++ A D + ++ T+ EY +H LV+ D++ A
Sbjct: 207 EFERTGALSRSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTNYCEA 266
Query: 270 YRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPI 329
R+I + PGR YPG ++ + + ER+ G V GK GS+T IPI
Sbjct: 267 LREIGAAREEIPGRRGYPGYMYTDLATIYERA-------------GVVEGKKGSVTQIPI 313
Query: 330 IETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRV 377
+ D + +P IT+GQI L L GI P I+ S+SR+
Sbjct: 314 LSMPDDDRTHPIPDLTGYITEGQIQLSRELHRKGIYPPIDPLPSLSRL 361
>pdb|3OAA|D Chain D, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|E Chain E, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|F Chain F, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|L Chain L, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|M Chain M, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|N Chain N, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|T Chain T, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|U Chain U, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|V Chain V, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|BB Chain b, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|CC Chain c, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|DD Chain d, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 459
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 135/304 (44%), Gaps = 16/304 (5%)
Query: 74 VILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVA 133
+ +G + + G VK +EVP+G GR++N LG+P+D KG I + I + A
Sbjct: 54 IAMGSSDGLRRGLDVKDLEHPIEVPVGEATLGRIMNVLGEPVDMKGEIGEEERWAIHRAA 113
Query: 134 PGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIIN-QKNKNVT 192
P + E L+TGIK ID + P KG + + G GK+ +++I N +
Sbjct: 114 PSYEELSNSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGY 173
Query: 193 CIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDH 252
++ +G++ + + + +V ++ + A +G T+ E FRD
Sbjct: 174 SVFAGVGERTREGNDFYHEMTDSNVIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDE 233
Query: 253 GKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENY 312
G+D L+ D++ + +A ++S LL R P Y + L ER
Sbjct: 234 GRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERIT---------- 283
Query: 313 TNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGI 372
+ KTGS+T++ + A D++ P + D + L + + GI PA++
Sbjct: 284 -----STKTGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLD 338
Query: 373 SVSR 376
S SR
Sbjct: 339 STSR 342
>pdb|3VR2|D Chain D, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|E Chain E, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|F Chain F, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR3|D Chain D, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|E Chain E, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|F Chain F, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR4|D Chain D, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|E Chain E, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|F Chain F, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR5|D Chain D, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|E Chain E, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|F Chain F, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
Length = 465
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 129/295 (43%), Gaps = 18/295 (6%)
Query: 88 VKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQ 147
V+ G L++ + + GRV + LG P D I + I I+R E +Q
Sbjct: 77 VRFLGHPLQLGVSEDXIGRVFDGLGRPKDNGPEILPEKYLDINGEVINPIARDYPDEFIQ 136
Query: 148 TGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDI----IINQKNKNVTCIYVAIGQKIS 203
TGI AID + + +GQ+ + +A I + + + ++ AIG
Sbjct: 137 TGISAIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFE 196
Query: 204 SIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFR-DHGKDALVVYDD 262
+ + GA+ ++ A+D A + + T EY + G LV+ D
Sbjct: 197 EAEFFXEDFRQTGAIDRSVXFXNLANDPAIERIATPRXALTAAEYLAYEKGXHVLVIXTD 256
Query: 263 LSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTG 322
+ A A R+IS + PGR YPG ++ + L ER+ G++ G G
Sbjct: 257 XTNYAEALREISAARREVPGRRGYPGYLYTNLATLFERA-------------GRIRGLKG 303
Query: 323 SLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRV 377
S+T IPI+ D + +P IT+GQI L L+ SGI+P I+ S+SR+
Sbjct: 304 SVTQIPILTXPEDDKTHPIPDLTGYITEGQIILTRELYKSGIQPPIDVLPSLSRL 358
>pdb|3VR6|A Chain A, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|B Chain B, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|C Chain C, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
Length = 600
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 118/267 (44%), Gaps = 40/267 (14%)
Query: 114 PIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQT 173
P+ PIK KL + P+ TG + ID+ P+ KG + G
Sbjct: 199 PVRRGRPIKQKLNPDV---------------PMITGQRVIDTFFPVTKGGAAAVPGPFGA 243
Query: 174 GKSSIAIDIIINQKNKNVT-CIYVAIGQKISSIKKTANLLEKY-------GAMPYTIIVA 225
GK+ + I K +V +YV G++ + + N + M T+++A
Sbjct: 244 GKTVVQHQI---AKWSDVDLVVYVGCGERGNEMTDVVNEFPELIDPNTGESLMERTVLIA 300
Query: 226 ATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREA 285
T++ + + S Y+G TI EYFRD G D ++ D S+ A A R++S L+ PG E
Sbjct: 301 NTSNMPVAAREASIYTGITIAEYFRDMGYDVAIMADSTSRWAEALREMSGRLEEMPGDEG 360
Query: 286 YPGDIFYLHSRL---LERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVP 342
YP YL SRL ERS RV + + GS+TAI + GDIS V
Sbjct: 361 YPA---YLGSRLAEYYERSGRVIALGSDQ--------REGSITAISAVSPSGGDISEPVT 409
Query: 343 TNVISITDGQIFLDSSLFNSGIRPAIN 369
N + + LDSSL P+IN
Sbjct: 410 QNTLRVVKVFWGLDSSLAQKRHFPSIN 436
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 29 GKVISVFDGICQIYGLSNA-MQGEMLEFPGNVFGLALNLERDSIGAVILGKYEHITEGDI 87
GK+I V + +S A +Q L V G + + +D + + I G+
Sbjct: 11 GKIIKVSGPLVMAENMSEASIQDMCLVGDLGVIGEIIEMRQDVASIQVYEETSGIGPGEP 70
Query: 88 VKCTGRILEVPIGPELCGRVINALGDPID 116
V+ TG L V +GP + ++ + + P+D
Sbjct: 71 VRSTGEALSVELGPGIISQMFDGIQRPLD 99
>pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|B Chain B, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 498
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/359 (23%), Positives = 152/359 (42%), Gaps = 47/359 (13%)
Query: 66 LERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKL 125
L + + AV + + +T G V TG L VP+G GR+ N LG+P+D P+ T+
Sbjct: 69 LGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGPTLGRIFNVLGEPVDNLRPVDTRT 128
Query: 126 TAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIIN 185
T+PI + AP + +TGIK ++ + P +G + + G GK+ + +++I N
Sbjct: 129 TSPIHRSAPAFTQLDTKLSIFETGIKVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINN 188
Query: 186 ---------------QKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASD 230
++ + +Y+ + K S + N+ E A+ Y ++
Sbjct: 189 IAKAHGGVSVFGGVGERTREGNDLYMEM--KESGVINEQNIAESKVALVY-----GQMNE 241
Query: 231 SASMQFISAYSGCTIGEYFRD-HGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGD 289
+ + T+ EYFRD + +D L+ D++ + A ++S LL R P Y
Sbjct: 242 PPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPT 301
Query: 290 IFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISIT 349
+ L ER + K GS+T+I + A D++ P +
Sbjct: 302 LSTEMGSLQERI---------------TSTKEGSITSIQAVYVPADDLTDPAPATTFAHL 346
Query: 350 DGQIFLDSSLFNSGIRPAINAGISVS-----RVGGAAQIKFIKKLSSNIRTDLAQYREL 403
D L L GI PA++ S S R+ G + ++ ++ L +Y+EL
Sbjct: 347 DATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYEIAQR----VKETLQRYKEL 401
>pdb|3VR2|A Chain A, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|B Chain B, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|C Chain C, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR3|A Chain A, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|B Chain B, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|C Chain C, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR4|A Chain A, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|B Chain B, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|C Chain C, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR5|A Chain A, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|B Chain B, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|C Chain C, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
Length = 600
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 113/267 (42%), Gaps = 40/267 (14%)
Query: 114 PIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQT 173
P+ PIK KL + P TG + ID+ P+ KG + G
Sbjct: 199 PVRRGRPIKQKLNPDV---------------PXITGQRVIDTFFPVTKGGAAAVPGPFGA 243
Query: 174 GKSSIAIDIIINQKNKNVT-CIYVAIGQKISSIKKTANLLEKY-------GAMPYTIIVA 225
GK+ + I K +V +YV G++ + N + T+++A
Sbjct: 244 GKTVVQHQIA---KWSDVDLVVYVGCGERGNEXTDVVNEFPELIDPNTGESLXERTVLIA 300
Query: 226 ATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREA 285
T++ + + S Y+G TI EYFRD G D + D S+ A A R+ S L+ PG E
Sbjct: 301 NTSNXPVAAREASIYTGITIAEYFRDXGYDVAIXADSTSRWAEALREXSGRLEEXPGDEG 360
Query: 286 YPGDIFYLHSRL---LERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVP 342
YP YL SRL ERS RV + + GS+TAI + GDIS V
Sbjct: 361 YPA---YLGSRLAEYYERSGRVIALGSDQ--------REGSITAISAVSPSGGDISEPVT 409
Query: 343 TNVISITDGQIFLDSSLFNSGIRPAIN 369
N + + LDSSL P+IN
Sbjct: 410 QNTLRVVKVFWGLDSSLAQKRHFPSIN 436
>pdb|3SDZ|A Chain A, Structural Characterization Of The Subunit A Mutant F427w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 131/288 (45%), Gaps = 34/288 (11%)
Query: 145 PLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISS 204
PL TG + ID+ P KG I G +GK+ + + + V IY+ G++ +
Sbjct: 210 PLITGQRVIDTFFPQAKGGTAAIPGPFGSGKT-VTQHQLAKWSDAQV-VIYIGCGERGNE 267
Query: 205 IKKTANLLEKYGA----------MPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGK 254
+ ++LE++ M T+++A T++ + + S Y+G TI EYFRD G
Sbjct: 268 M---TDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGY 324
Query: 255 DALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRL---LERSARVNIKYVEN 311
D ++ D S+ A A R+IS L+ PG E YP YL S+L ER+ RV + +
Sbjct: 325 DVALMADSTSRWAEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAGRV-VTLGSD 380
Query: 312 YTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAG 371
Y + GS++ I + GD S V N + + LD+ L PAIN
Sbjct: 381 Y-------RVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHWPAINWL 433
Query: 372 ISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELA-AFSQFSSDLDLVTR 418
S S A + + K NI + R+ A A Q S+L + R
Sbjct: 434 TSYSLYVDAVKDWWHK----NIDPEWKAMRDKAMALLQKESELQEIVR 477
>pdb|3QIA|A Chain A, Crystal Structure Of P-Loop G237a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 131/288 (45%), Gaps = 34/288 (11%)
Query: 145 PLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISS 204
PL TG + ID+ P KG I G +GK+ + + + V IY+ G++ +
Sbjct: 210 PLITGQRVIDTFFPQAKGGTAAIPGPFASGKT-VTQHQLAKWSDAQV-VIYIGCGERGNE 267
Query: 205 IKKTANLLEKYGA----------MPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGK 254
+ ++LE++ M T+++A T++ + + S Y+G TI EYFRD G
Sbjct: 268 M---TDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGY 324
Query: 255 DALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRL---LERSARVNIKYVEN 311
D ++ D S+ A A R+IS L+ PG E YP YL S+L ER+ RV + +
Sbjct: 325 DVALMADSTSRWAEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAGRV-VTLGSD 380
Query: 312 YTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAG 371
Y + GS++ I + GD S V N + + LD+ L PAIN
Sbjct: 381 Y-------RVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWL 433
Query: 372 ISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELA-AFSQFSSDLDLVTR 418
S S A + + K NI + R+ A A Q S+L + R
Sbjct: 434 TSYSLYVDAVKDWWHK----NIDPEWKAMRDKAMALLQKESELQEIVR 477
>pdb|3MFY|A Chain A, Structural Characterization Of The Subunit A Mutant F236a
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 131/288 (45%), Gaps = 34/288 (11%)
Query: 145 PLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISS 204
PL TG + ID+ P KG I G +GK+ + + + V IY+ G++ +
Sbjct: 210 PLITGQRVIDTFFPQAKGGTAAIPGPAGSGKT-VTQHQLAKWSDAQV-VIYIGCGERGNE 267
Query: 205 IKKTANLLEKYGA----------MPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGK 254
+ ++LE++ M T+++A T++ + + S Y+G TI EYFRD G
Sbjct: 268 M---TDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGY 324
Query: 255 DALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRL---LERSARVNIKYVEN 311
D ++ D S+ A A R+IS L+ PG E YP YL S+L ER+ RV + +
Sbjct: 325 DVALMADSTSRWAEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAGRV-VTLGSD 380
Query: 312 YTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAG 371
Y + GS++ I + GD S V N + + LD+ L PAIN
Sbjct: 381 Y-------RVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWL 433
Query: 372 ISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELA-AFSQFSSDLDLVTR 418
S S A + + K NI + R+ A A Q S+L + R
Sbjct: 434 TSYSLYVDAVKDWWHK----NIDPEWKAMRDKAMALLQKESELQEIVR 477
>pdb|1VDZ|A Chain A, Crystal Structure Of A-Type Atpase Catalytic Subunit A
From Pyrococcus Horikoshii Ot3
Length = 588
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 131/288 (45%), Gaps = 34/288 (11%)
Query: 145 PLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISS 204
PL TG + ID+ P KG I G +GK+ + + + V IY+ G++ +
Sbjct: 210 PLITGQRVIDTFFPQAKGGTAAIPGPFGSGKT-VTQHQLAKWSDAQV-VIYIGCGERGNE 267
Query: 205 IKKTANLLEKYGA----------MPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGK 254
+ ++LE++ M T+++A T++ + + S Y+G TI EYFRD G
Sbjct: 268 M---TDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGY 324
Query: 255 DALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRL---LERSARVNIKYVEN 311
D ++ D S+ A A R+IS L+ PG E YP YL S+L ER+ RV + +
Sbjct: 325 DVALMADSTSRWAEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAGRV-VTLGSD 380
Query: 312 YTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAG 371
Y + GS++ I + GD S V N + + LD+ L PAIN
Sbjct: 381 Y-------RVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWL 433
Query: 372 ISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELA-AFSQFSSDLDLVTR 418
S S A + + K NI + R+ A A Q S+L + R
Sbjct: 434 TSYSLYVDAVKDWWHK----NIDPEWKAMRDKAMALLQKESELQEIVR 477
>pdb|3I4L|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Amp-Pnp Of The A1ao Atp
Synthase
pdb|3I72|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With So4 Of The A1ao Atp Synthase
pdb|3I73|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Adp Of The A1ao Atp Synthase
pdb|3P20|A Chain A, Crystal Structure Of Vanadate Bound Subunit A Of The A1ao
Atp Synthase
Length = 588
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 131/288 (45%), Gaps = 34/288 (11%)
Query: 145 PLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISS 204
PL TG + ID+ P KG I G +GK+ + + + V IY+ G++ +
Sbjct: 210 PLITGQRVIDTFFPQAKGGTAAIPGPFGSGKT-VTQHQLAKWSDAQV-VIYIGCGERGNE 267
Query: 205 IKKTANLLEKYGA----------MPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGK 254
+ ++LE++ M T+++A T++ + + S Y+G TI EYFRD G
Sbjct: 268 M---TDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGY 324
Query: 255 DALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRL---LERSARVNIKYVEN 311
D ++ D S+ A A R+IS L+ PG E YP YL S+L ER+ RV + +
Sbjct: 325 DVALMADSTSRWAEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAGRV-VTLGSD 380
Query: 312 YTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAG 371
Y + GS++ I + GD S V N + + LD+ L PAIN
Sbjct: 381 Y-------RVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWL 433
Query: 372 ISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELA-AFSQFSSDLDLVTR 418
S S A + + K NI + R+ A A Q S+L + R
Sbjct: 434 TSYSLYVDAVKDWWHK----NIDPEWKAMRDKAMALLQKESELQEIVR 477
>pdb|3SE0|A Chain A, Structural Characterization Of The Subunit A Mutant F508w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 131/288 (45%), Gaps = 34/288 (11%)
Query: 145 PLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISS 204
PL TG + ID+ P KG I G +GK+ + + + V IY+ G++ +
Sbjct: 210 PLITGQRVIDTFFPQAKGGTAAIPGPFGSGKT-VTQHQLAKWSDAQV-VIYIGCGERGNE 267
Query: 205 IKKTANLLEKYGA----------MPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGK 254
+ ++LE++ M T+++A T++ + + S Y+G TI EYFRD G
Sbjct: 268 M---TDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGY 324
Query: 255 DALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRL---LERSARVNIKYVEN 311
D ++ D S+ A A R+IS L+ PG E YP YL S+L ER+ RV + +
Sbjct: 325 DVALMADSTSRWAEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAGRV-VTLGSD 380
Query: 312 YTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAG 371
Y + GS++ I + GD S V N + + LD+ L PAIN
Sbjct: 381 Y-------RVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWL 433
Query: 372 ISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELA-AFSQFSSDLDLVTR 418
S S A + + K NI + R+ A A Q S+L + R
Sbjct: 434 TSYSLYVDAVKDWWHK----NIDPEWKAMRDKAMALLQKESELQEIVR 477
>pdb|3ND9|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 131/288 (45%), Gaps = 34/288 (11%)
Query: 145 PLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISS 204
PL TG + ID+ P KG I G +GK+ + + + V IY+ G++ +
Sbjct: 210 PLITGQRVIDTFFPQAKGGTAAIPGPFGSGKA-VTQHQLAKWSDAQV-VIYIGCGERGNE 267
Query: 205 IKKTANLLEKYGA----------MPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGK 254
+ ++LE++ M T+++A T++ + + S Y+G TI EYFRD G
Sbjct: 268 M---TDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGY 324
Query: 255 DALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRL---LERSARVNIKYVEN 311
D ++ D S+ A A R+IS L+ PG E YP YL S+L ER+ RV + +
Sbjct: 325 DVALMADSTSRWAEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAGRV-VTLGSD 380
Query: 312 YTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAG 371
Y + GS++ I + GD S V N + + LD+ L PAIN
Sbjct: 381 Y-------RVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWL 433
Query: 372 ISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELA-AFSQFSSDLDLVTR 418
S S A + + K NI + R+ A A Q S+L + R
Sbjct: 434 TSYSLYVDAVKDWWHK----NIDPEWKAMRDKAMALLQKESELQEIVR 477
>pdb|3M4Y|A Chain A, Structural Characterization Of The Subunit A Mutant P235a
Of The A-Atp Synthase
Length = 588
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 131/288 (45%), Gaps = 34/288 (11%)
Query: 145 PLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISS 204
PL TG + ID+ P KG I G +GK+ + + + V IY+ G++ +
Sbjct: 210 PLITGQRVIDTFFPQAKGGTAAIPGAFGSGKT-VTQHQLAKWSDAQV-VIYIGCGERGNE 267
Query: 205 IKKTANLLEKYGA----------MPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGK 254
+ ++LE++ M T+++A T++ + + S Y+G TI EYFRD G
Sbjct: 268 M---TDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGY 324
Query: 255 DALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRL---LERSARVNIKYVEN 311
D ++ D S+ A A R+IS L+ PG E YP YL S+L ER+ RV + +
Sbjct: 325 DVALMADSTSRWAEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAGRV-VTLGSD 380
Query: 312 YTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAG 371
Y + GS++ I + GD S V N + + LD+ L PAIN
Sbjct: 381 Y-------RVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWL 433
Query: 372 ISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELA-AFSQFSSDLDLVTR 418
S S A + + K NI + R+ A A Q S+L + R
Sbjct: 434 TSYSLYVDAVKDWWHK----NIDPEWKAMRDKAMALLQKESELQEIVR 477
>pdb|3IKJ|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Mutant S238a Of The A1ao Atp
Synthase
Length = 588
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 130/288 (45%), Gaps = 34/288 (11%)
Query: 145 PLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISS 204
PL TG + ID+ P KG I G GK+ + + + V IY+ G++ +
Sbjct: 210 PLITGQRVIDTFFPQAKGGTAAIPGPFGAGKT-VTQHQLAKWSDAQV-VIYIGCGERGNE 267
Query: 205 IKKTANLLEKYGA----------MPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGK 254
+ ++LE++ M T+++A T++ + + S Y+G TI EYFRD G
Sbjct: 268 M---TDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGY 324
Query: 255 DALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRL---LERSARVNIKYVEN 311
D ++ D S+ A A R+IS L+ PG E YP YL S+L ER+ RV + +
Sbjct: 325 DVALMADSTSRWAEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAGRV-VTLGSD 380
Query: 312 YTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAG 371
Y + GS++ I + GD S V N + + LD+ L PAIN
Sbjct: 381 Y-------RVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWL 433
Query: 372 ISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELA-AFSQFSSDLDLVTR 418
S S A + + K NI + R+ A A Q S+L + R
Sbjct: 434 TSYSLYVDAVKDWWHK----NIDPEWKAMRDKAMALLQKESELQEIVR 477
>pdb|3ND8|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 131/288 (45%), Gaps = 34/288 (11%)
Query: 145 PLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISS 204
PL TG + ID+ P KG I G +G +++ + + V IY+ G++ +
Sbjct: 210 PLITGQRVIDTFFPQAKGGTAAIPGPFGSG-ATVTQHQLAKWSDAQV-VIYIGCGERGNE 267
Query: 205 IKKTANLLEKYGA----------MPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGK 254
+ ++LE++ M T+++A T++ + + S Y+G TI EYFRD G
Sbjct: 268 M---TDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGY 324
Query: 255 DALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRL---LERSARVNIKYVEN 311
D ++ D S+ A A R+IS L+ PG E YP YL S+L ER+ RV + +
Sbjct: 325 DVALMADSTSRWAEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAGRV-VTLGSD 380
Query: 312 YTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAG 371
Y + GS++ I + GD S V N + + LD+ L PAIN
Sbjct: 381 Y-------RVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWL 433
Query: 372 ISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELA-AFSQFSSDLDLVTR 418
S S A + + K NI + R+ A A Q S+L + R
Sbjct: 434 TSYSLYVDAVKDWWHK----NIDPEWKAMRDKAMALLQKESELQEIVR 477
>pdb|3QG1|A Chain A, Crystal Structure Of P-Loop G239a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 128/288 (44%), Gaps = 34/288 (11%)
Query: 145 PLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISS 204
PL TG + ID+ P KG I G G + + + + IY+ G++ +
Sbjct: 210 PLITGQRVIDTFFPQAKGGTAAIPG--PFGSAKTVTQHQLAKWSDAQVVIYIGCGERGNE 267
Query: 205 IKKTANLLEKYGA----------MPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGK 254
+ ++LE++ M T+++A T++ + + S Y+G TI EYFRD G
Sbjct: 268 M---TDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGY 324
Query: 255 DALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRL---LERSARVNIKYVEN 311
D ++ D S+ A A R+IS L+ PG E YP YL S+L ER+ RV + +
Sbjct: 325 DVALMADSTSRWAEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAGRV-VTLGSD 380
Query: 312 YTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAG 371
Y + GS++ I + GD S V N + + LD+ L PAIN
Sbjct: 381 Y-------RVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWL 433
Query: 372 ISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELA-AFSQFSSDLDLVTR 418
S S A + + K NI + R+ A A Q S+L + R
Sbjct: 434 TSYSLYVDAVKDWWHK----NIDPEWKAMRDKAMALLQKESELQEIVR 477
>pdb|3QJY|A Chain A, Crystal Structure Of P-Loop G234a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 130/288 (45%), Gaps = 34/288 (11%)
Query: 145 PLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISS 204
PL TG + ID+ P KG I +GK+ + + + V IY+ G++ +
Sbjct: 210 PLITGQRVIDTFFPQAKGGTAAIPAPFGSGKT-VTQHQLAKWSDAQV-VIYIGCGERGNE 267
Query: 205 IKKTANLLEKYGA----------MPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGK 254
+ ++LE++ M T+++A T++ + + S Y+G TI EYFRD G
Sbjct: 268 M---TDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGY 324
Query: 255 DALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRL---LERSARVNIKYVEN 311
D ++ D S+ A A R+IS L+ PG E YP YL S+L ER+ RV + +
Sbjct: 325 DVALMADSTSRWAEALREISGRLEEMPGEEGYPA---YLASKLAEFYERAGRV-VTLGSD 380
Query: 312 YTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAG 371
Y + GS++ I + GD S V N + + LD+ L PAIN
Sbjct: 381 Y-------RVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWL 433
Query: 372 ISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELA-AFSQFSSDLDLVTR 418
S S A + + K NI + R+ A A Q S+L + R
Sbjct: 434 TSYSLYVDAVKDWWHK----NIDPEWKAMRDKAMALLQKESELQEIVR 477
>pdb|3GQB|A Chain A, Crystal Structure Of The A3b3 Complex From V-atpase
pdb|3GQB|C Chain C, Crystal Structure Of The A3b3 Complex From V-atpase
Length = 578
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 144/326 (44%), Gaps = 44/326 (13%)
Query: 92 GRILEV-PIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGI 150
GR+ EV P G + L D + +K T P+ + P V + + P TG+
Sbjct: 155 GRVKEVKPAGEYTVEEPVVVLEDGTE----LKMYHTWPVRRARP-VQRKLDPNTPFLTGM 209
Query: 151 KAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTAN 210
+ +D + P+ G I G +GKS + + N +V +YV G++ + + T
Sbjct: 210 RILDVLFPVAMGGTAAIPGPFGSGKS-VTQQSLAKWSNADV-VVYVGSGERGNEM--TDV 265
Query: 211 LLE-------KYGA--MPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYD 261
L+E K G M T+++A T++ + + S Y G TI EYFRD G ++ D
Sbjct: 266 LVEFPELTDPKTGGPLMHRTVLIANTSNMPVAAREASIYVGVTIAEYFRDQGFSVALMAD 325
Query: 262 DLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRL---LERSARVNIKYVENYTNGKVT 318
S+ A A R+IS L+ P E YP YL +RL ER+ +V +
Sbjct: 326 STSRWAEALREISSRLEEMPAEEGYPP---YLAARLAAFYERAGKVI----------TLG 372
Query: 319 GKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVG 378
G+ G++T + + GD+S V + + I LD+SL PAIN S S
Sbjct: 373 GEEGAVTIVGAVSPPGGDMSEPVTQSTLRIVGAFWRLDASLAFRRHFPAINWNGSYS--- 429
Query: 379 GAAQIKFIKKLSSNIRTDLAQ-YREL 403
F L R ++A+ Y EL
Sbjct: 430 -----LFTSALDPWYRENVAEDYPEL 450
>pdb|3A5C|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|B Chain B, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|C Chain C, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|I Chain I, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|J Chain J, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|K Chain K, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|B Chain B, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|C Chain C, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|I Chain I, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|J Chain J, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|K Chain K, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|A Chain A, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|B Chain B, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|C Chain C, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 578
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 84/296 (28%), Positives = 133/296 (44%), Gaps = 39/296 (13%)
Query: 121 IKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAI 180
+K T P+ + P V + + P TG++ +D + P+ G I G +GK+ +
Sbjct: 181 LKMYHTWPVRRARP-VQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGSGKT-VTQ 238
Query: 181 DIIINQKNKNVTCIYVAIGQKISSIKKTANLLE-------KYGA--MPYTIIVAATASDS 231
+ N +V +YV G++ + + T L+E K G M T+++A T++
Sbjct: 239 QSLAKWSNADV-VVYVGCGERGNEM--TDVLVEFPELTDPKTGGPLMHRTVLIANTSNMP 295
Query: 232 ASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIF 291
+ + S Y G TI EYFRD G ++ D S+ A A R+IS L+ P E YP
Sbjct: 296 VAAREASIYVGVTIAEYFRDQGFSVALMADSTSRWAEALREISSRLEEMPAEEGYPP--- 352
Query: 292 YLHSRL---LERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISI 348
YL +RL ER+ +V + G+ G++T + + GD+S V + + I
Sbjct: 353 YLAARLAAFYERAGKVI----------TLGGEEGAVTIVGAVSPPGGDMSEPVTQSTLRI 402
Query: 349 TDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQ-YREL 403
LD+SL PAIN S S F L R ++A+ Y EL
Sbjct: 403 VGAFWRLDASLAFRRHFPAINWNGSYS--------LFTSALDPWYRENVAEDYPEL 450
>pdb|1PVO|A Chain A, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|B Chain B, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|C Chain C, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|D Chain D, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|E Chain E, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1PVO|F Chain F, X-Ray Crystal Structure Of Rho Transcription Termination
Factor In Complex With Ssrna Substrate And Anppnp
pdb|1XPR|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPR|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-formylbicyclomycin (fb)
pdb|1XPU|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPU|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
5a-(3-Formylphenylsulfanyl)- Dihydrobicyclomycin (Fpdb)
pdb|1XPO|A Chain A, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|B Chain B, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|C Chain C, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|D Chain D, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|E Chain E, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
pdb|1XPO|F Chain F, Structural Mechanism Of Inhibition Of The Rho
Transcription Termination Factor By The Antibiotic
Bicyclomycin
Length = 419
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 9/125 (7%)
Query: 151 KAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVA--IGQKISSIKKT 208
+ +D PIG+GQR LI+ + GK+ + +I + + C+ + I ++ + +
Sbjct: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219
Query: 209 ANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAV 268
L++ +VA+T + AS A + +H KD +++ D +++ A
Sbjct: 220 QRLVKGE-------VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLAR 272
Query: 269 AYRQI 273
AY +
Sbjct: 273 AYNTV 277
>pdb|1PV4|A Chain A, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|B Chain B, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|C Chain C, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|D Chain D, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|E Chain E, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|F Chain F, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
Length = 419
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 9/125 (7%)
Query: 151 KAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIY--VAIGQKISSIKKT 208
+ +D PIG+GQR LI+ + GK+ + +I + + C+ + I ++ + +
Sbjct: 160 RVLDLASPIGRGQRGLIVAPPKAGKTXLLQNIAQSIAYNHPDCVLXVLLIDERPEEVTEX 219
Query: 209 ANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAV 268
L++ +VA+T + AS A + +H KD +++ D +++ A
Sbjct: 220 QRLVKGE-------VVASTFDEPASRHVQVAEXVIEKAKRLVEHKKDVIILLDSITRLAR 272
Query: 269 AYRQI 273
AY +
Sbjct: 273 AYNTV 277
>pdb|3ICE|A Chain A, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|B Chain B, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|C Chain C, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|D Chain D, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|E Chain E, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|F Chain F, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
Length = 422
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 9/125 (7%)
Query: 151 KAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIY--VAIGQKISSIKKT 208
+ +D PIG+GQR LI+ + GK+ + +I + + C+ + I ++ + +
Sbjct: 163 RVLDLASPIGRGQRGLIVAPPKAGKTXLLQNIAQSIAYNHPDCVLXVLLIDERPEEVTEX 222
Query: 209 ANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAV 268
L++ +VA+T + AS A + +H KD +++ D +++ A
Sbjct: 223 QRLVKGE-------VVASTFDEPASRHVQVAEXVIEKAKRLVEHKKDVIILLDSITRLAR 275
Query: 269 AYRQI 273
AY +
Sbjct: 276 AYNTV 280
>pdb|2HT1|A Chain A, The Closed Ring Structure Of The Rho Transcription
Termination Factor In Complex With Nucleic Acid In The
Motor Domains
pdb|2HT1|B Chain B, The Closed Ring Structure Of The Rho Transcription
Termination Factor In Complex With Nucleic Acid In The
Motor Domains
Length = 433
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 9/125 (7%)
Query: 151 KAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVA--IGQKISSIKKT 208
+ +D PIG+GQR LI+ + GK+ + +I + + C+ + I ++ + +
Sbjct: 182 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 241
Query: 209 ANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAV 268
L++ +VA+T + AS A + +H KD +++ D +++ A
Sbjct: 242 QRLVKGE-------VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLAR 294
Query: 269 AYRQI 273
AY +
Sbjct: 295 AYNTV 299
>pdb|3L0O|A Chain A, Structure Of Rna-Free Rho Transcription Termination Factor
From Thermotoga Maritima
pdb|3L0O|B Chain B, Structure Of Rna-Free Rho Transcription Termination Factor
From Thermotoga Maritima
Length = 427
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 97/240 (40%), Gaps = 31/240 (12%)
Query: 143 SEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDII--INQKNKNVTCIYVAIGQ 200
++P + ID PIGKGQR +I+ + GK++I +I I + + + I + I +
Sbjct: 156 TDPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDE 215
Query: 201 K---ISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDAL 257
+ ++ I+++ N I++AA Q A + + + D +
Sbjct: 216 RPEEVTDIRESTN----------AIVIAAPFDMPPDKQVKVAELTLEMAKRLVEFNYDVV 265
Query: 258 VVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKV 317
++ D L++ A Y + PP + G + L + R + +
Sbjct: 266 ILLDSLTRLARVYNIVV-----PPSGKLLTGGV---DPAALYKPKRF-------FGAARN 310
Query: 318 TGKTGSLTAIPIIETQAGD-ISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSR 376
T + GSLT I + G + + + ++ L L N I PAIN +S +R
Sbjct: 311 TREGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELVLSRQLANKRIFPAINLLLSGTR 370
>pdb|4DK1|A Chain A, Crystal Structure Of Maca-Mexa Chimeric Protein,
Containing The Pseudomonas Aeruginosa Mexa Alpha-Hairpin
Domain.
pdb|4DK1|B Chain B, Crystal Structure Of Maca-Mexa Chimeric Protein,
Containing The Pseudomonas Aeruginosa Mexa Alpha-Hairpin
Domain.
pdb|4DK1|C Chain C, Crystal Structure Of Maca-Mexa Chimeric Protein,
Containing The Pseudomonas Aeruginosa Mexa Alpha-Hairpin
Domain.
pdb|4DK1|D Chain D, Crystal Structure Of Maca-Mexa Chimeric Protein,
Containing The Pseudomonas Aeruginosa Mexa Alpha-Hairpin
Domain
Length = 341
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 18/124 (14%)
Query: 264 SKQAVAYRQISLLLKRPPGREAYP-GDIFYLHSRLLERSARVNIKYVENYTNGKVTGK-T 321
S Q A R L+ + ++ Y + YL S+ AR+N++Y K+T
Sbjct: 81 STQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVEQARINLRYT------KITSPID 134
Query: 322 GSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAA 381
G++ + P+ E Q + + PT +I + D L I+P I+ G +++V
Sbjct: 135 GTVISTPVSEGQTVNSNQTTPT-IIKVAD--------LSKXRIKPEISEG-DITKVKAGQ 184
Query: 382 QIKF 385
+ F
Sbjct: 185 DVTF 188
>pdb|4EMB|A Chain A, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
pdb|4EMB|B Chain B, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
pdb|4EMB|C Chain C, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
pdb|4EMB|D Chain D, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
Length = 274
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 151 KAIDSIVPIGKGQRELIIGDRQTGKS-SIAIDIIINQKNKNVTCIYVAIGQKISSIKKTA 209
K ID V G L++ +Q G S IA ++++ N + I +GQ S+KKT
Sbjct: 57 KGIDEAVEAG-----LLL--KQEGYSFDIAFSSLLSRANDTLNIILRELGQSYISVKKTW 109
Query: 210 NLLEK-YGAM 218
L E+ YGA+
Sbjct: 110 RLNERHYGAL 119
>pdb|1WBD|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38q Mutant, In Complex With A G.T Mismatch
pdb|1WBD|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38q Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 107 VINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKA 152
+ +GDP KGP++ K+ + V PG IS +++ + Q + A
Sbjct: 92 ICEQIGDPATSKGPVERKV---VRIVTPGTISDEALLQERQDNLLA 134
>pdb|1WB9|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38t Mutant, In Complex With A G.T Mismatch
pdb|1WB9|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38t Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 107 VINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKA 152
+ +GDP KGP++ K+ + V PG IS +++ + Q + A
Sbjct: 92 ICEQIGDPATSKGPVERKV---VRIVTPGTISDEALLQERQDNLLA 134
>pdb|1OH5|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A C:a Mismatch
pdb|1OH5|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A C:a Mismatch
pdb|1OH6|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
An A:a Mismatch
pdb|1OH6|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
An A:a Mismatch
pdb|1OH7|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:g Mismatch
pdb|1OH7|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:g Mismatch
pdb|1OH8|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
An Unpaired Thymidine
pdb|1OH8|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
An Unpaired Thymidine
pdb|1W7A|A Chain A, Atp Bound Muts
pdb|1W7A|B Chain B, Atp Bound Muts
pdb|2WTU|A Chain A, Crystal Structure Of Escherichia Coli Muts In Complex With
A 16 Basepair Oligo Containing An A.A Mismatch.
pdb|2WTU|B Chain B, Crystal Structure Of Escherichia Coli Muts In Complex With
A 16 Basepair Oligo Containing An A.A Mismatch
Length = 800
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 107 VINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKA 152
+ +GDP KGP++ K+ + V PG IS +++ + Q + A
Sbjct: 92 ICEQIGDPATSKGPVERKV---VRIVTPGTISDEALLQERQDNLLA 134
>pdb|3K0S|A Chain A, Crystal Structure Of E.Coli Dna Mismatch Repair Protein
Muts, D693n Mutant, In Complex With Gt Mismatched Dna
pdb|3K0S|B Chain B, Crystal Structure Of E.Coli Dna Mismatch Repair Protein
Muts, D693n Mutant, In Complex With Gt Mismatched Dna
Length = 799
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 107 VINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKA 152
+ +GDP KGP++ K+ + V PG IS +++ + Q + A
Sbjct: 91 ICEQIGDPATSKGPVERKV---VRIVTPGTISDEALLQERQDNLLA 133
>pdb|1WBB|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38a Mutant, In Complex With A G.T Mismatch
pdb|1WBB|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38a Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 107 VINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKA 152
+ +GDP KGP++ K+ + V PG IS +++ + Q + A
Sbjct: 92 ICEQIGDPATSKGPVERKV---VRIVTPGTISDEALLQERQDNLLA 134
>pdb|1NG9|A Chain A, E.Coli Muts R697a: An Atpase-Asymmetry Mutant
pdb|1NG9|B Chain B, E.Coli Muts R697a: An Atpase-Asymmetry Mutant
Length = 800
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 107 VINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKA 152
+ +GDP KGP++ K+ + V PG IS +++ + Q + A
Sbjct: 92 ICEQIGDPATSKGPVERKV---VRIVTPGTISDEALLQERQDNLLA 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,998,902
Number of Sequences: 62578
Number of extensions: 573972
Number of successful extensions: 2125
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1911
Number of HSP's gapped (non-prelim): 100
length of query: 515
length of database: 14,973,337
effective HSP length: 103
effective length of query: 412
effective length of database: 8,527,803
effective search space: 3513454836
effective search space used: 3513454836
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)