Query psy2894
Match_columns 515
No_of_seqs 267 out of 2127
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 20:19:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2894.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2894hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0056 AtpA F0F1-type ATP syn 100.0 5E-150 1E-154 1156.1 48.2 502 1-513 1-502 (504)
2 PRK13343 F0F1 ATP synthase sub 100.0 1E-138 2E-143 1112.6 55.6 502 1-513 1-502 (502)
3 TIGR03324 alt_F1F0_F1_al alter 100.0 9E-138 2E-142 1101.9 54.9 493 4-507 4-496 (497)
4 CHL00059 atpA ATP synthase CF1 100.0 1E-136 3E-141 1088.4 52.1 479 25-514 4-482 (485)
5 TIGR00962 atpA proton transloc 100.0 6E-136 1E-140 1096.5 55.0 500 3-513 2-501 (501)
6 PRK09281 F0F1 ATP synthase sub 100.0 1E-135 2E-140 1094.7 56.0 501 1-512 1-501 (502)
7 PRK07165 F0F1 ATP synthase sub 100.0 2E-131 5E-136 1051.9 50.8 466 29-511 3-477 (507)
8 PTZ00185 ATPase alpha subunit; 100.0 8E-129 2E-133 1025.2 45.8 475 25-515 37-551 (574)
9 PRK04196 V-type ATP synthase s 100.0 4E-117 8E-122 944.4 46.5 435 26-478 2-455 (460)
10 TIGR01041 ATP_syn_B_arch ATP s 100.0 2E-116 5E-121 935.8 45.2 432 27-476 1-451 (458)
11 COG1157 FliI Flagellar biosynt 100.0 2E-115 4E-120 899.4 40.8 423 12-452 9-439 (441)
12 PRK06936 type III secretion sy 100.0 8E-113 2E-117 901.8 46.0 428 3-451 2-437 (439)
13 CHL00060 atpB ATP synthase CF1 100.0 4E-112 1E-116 902.8 45.1 425 25-465 13-471 (494)
14 PRK09280 F0F1 ATP synthase sub 100.0 1E-111 2E-116 897.5 45.0 422 27-464 2-446 (463)
15 PRK08972 fliI flagellum-specif 100.0 3E-111 7E-116 887.5 46.3 430 6-452 5-440 (444)
16 TIGR01039 atpD ATP synthase, F 100.0 2E-111 5E-116 892.2 44.0 422 28-465 2-446 (461)
17 TIGR01040 V-ATPase_V1_B V-type 100.0 2E-111 5E-116 889.7 41.1 430 27-475 1-459 (466)
18 PRK12597 F0F1 ATP synthase sub 100.0 6E-111 1E-115 894.3 43.4 421 28-464 3-445 (461)
19 TIGR03305 alt_F1F0_F1_bet alte 100.0 8E-110 2E-114 881.0 44.1 421 29-464 1-440 (449)
20 PRK08927 fliI flagellum-specif 100.0 4E-109 8E-114 874.7 44.7 418 22-454 12-438 (442)
21 PRK05688 fliI flagellum-specif 100.0 1E-108 2E-113 872.8 45.7 419 18-452 18-446 (451)
22 PRK06820 type III secretion sy 100.0 1E-108 3E-113 871.5 46.4 427 6-451 7-438 (440)
23 TIGR01043 ATP_syn_A_arch ATP s 100.0 3E-108 6E-113 884.5 47.2 428 28-466 1-544 (578)
24 PRK09099 type III secretion sy 100.0 6E-108 1E-112 867.9 45.9 412 22-451 19-438 (441)
25 TIGR03498 FliI_clade3 flagella 100.0 6E-108 1E-112 864.2 42.5 408 29-451 1-417 (418)
26 PRK07594 type III secretion sy 100.0 3E-107 7E-112 859.8 43.4 416 17-451 11-430 (433)
27 TIGR03496 FliI_clade1 flagella 100.0 9E-107 2E-111 855.2 42.5 404 29-448 1-411 (411)
28 PRK02118 V-type ATP synthase s 100.0 2E-106 4E-111 851.1 42.2 419 26-475 3-429 (436)
29 TIGR01042 V-ATPase_V1_A V-type 100.0 2E-106 5E-111 866.3 43.1 414 27-451 1-527 (591)
30 PRK08472 fliI flagellum-specif 100.0 4E-106 8E-111 852.0 44.0 412 22-451 13-432 (434)
31 PRK04192 V-type ATP synthase s 100.0 3E-106 7E-111 869.9 43.4 410 27-449 3-523 (586)
32 PRK08149 ATP synthase SpaL; Va 100.0 6E-105 1E-109 841.2 42.5 409 25-451 4-426 (428)
33 TIGR03497 FliI_clade2 flagella 100.0 1E-104 3E-109 839.6 43.0 405 29-451 1-412 (413)
34 PRK05922 type III secretion sy 100.0 3E-104 7E-109 836.3 44.9 411 22-452 14-431 (434)
35 PRK06002 fliI flagellum-specif 100.0 8E-104 2E-108 834.5 44.4 434 4-455 2-444 (450)
36 PRK07196 fliI flagellum-specif 100.0 7E-104 2E-108 834.4 42.8 423 12-451 2-431 (434)
37 PRK07960 fliI flagellum-specif 100.0 2E-103 4E-108 830.8 44.7 417 19-451 19-452 (455)
38 TIGR02546 III_secr_ATP type II 100.0 8E-103 2E-107 829.4 43.1 410 25-452 3-421 (422)
39 TIGR01026 fliI_yscN ATPase Fli 100.0 1E-100 2E-105 815.6 45.3 426 8-451 4-438 (440)
40 PRK06793 fliI flagellum-specif 100.0 4.5E-99 1E-103 797.6 42.2 411 22-451 16-431 (432)
41 PRK06315 type III secretion sy 100.0 1.6E-97 3E-102 787.7 41.3 428 7-452 3-441 (442)
42 PRK07721 fliI flagellum-specif 100.0 8.5E-97 2E-101 784.9 43.2 412 23-452 14-434 (438)
43 cd01135 V_A-ATPase_B V/A-type 100.0 1.2E-94 2.5E-99 722.6 24.3 270 94-377 1-276 (276)
44 cd01132 F1_ATPase_alpha F1 ATP 100.0 5.9E-94 1.3E-98 717.6 25.7 273 95-378 2-274 (274)
45 PRK14698 V-type ATP synthase s 100.0 1.6E-89 3.5E-94 783.3 41.2 270 188-466 681-978 (1017)
46 cd01136 ATPase_flagellum-secre 100.0 2.5E-90 5.4E-95 709.6 30.3 323 94-433 1-326 (326)
47 cd01133 F1-ATPase_beta F1 ATP 100.0 3.5E-90 7.5E-95 691.7 25.7 271 94-379 1-273 (274)
48 COG0055 AtpD F0F1-type ATP syn 100.0 9.8E-83 2.1E-87 644.9 31.7 422 27-463 2-448 (468)
49 COG1156 NtpB Archaeal/vacuolar 100.0 1.5E-79 3.2E-84 626.9 29.3 433 25-475 4-455 (463)
50 cd01134 V_A-ATPase_A V/A-type 100.0 6.7E-80 1.5E-84 630.9 23.7 246 121-377 117-369 (369)
51 COG1155 NtpA Archaeal/vacuolar 100.0 7.1E-75 1.5E-79 607.0 26.0 411 28-449 2-522 (588)
52 KOG1353|consensus 100.0 1.8E-75 4E-80 564.8 12.7 331 8-450 1-339 (340)
53 KOG1351|consensus 100.0 9.5E-72 2.1E-76 549.2 29.3 441 16-475 13-481 (489)
54 KOG1352|consensus 100.0 1.3E-72 2.9E-77 571.3 21.0 415 23-448 16-543 (618)
55 KOG1350|consensus 100.0 4.8E-72 1E-76 556.0 23.1 422 25-461 49-496 (521)
56 PRK12608 transcription termina 100.0 1.8E-71 3.8E-76 575.4 25.6 301 79-409 56-361 (380)
57 PF00006 ATP-synt_ab: ATP synt 100.0 1.3E-70 2.7E-75 535.6 17.0 215 148-375 1-215 (215)
58 PRK12678 transcription termina 100.0 9.2E-64 2E-68 534.1 24.7 293 80-408 331-643 (672)
59 PRK09376 rho transcription ter 100.0 3.1E-63 6.7E-68 514.9 26.3 300 80-409 89-397 (416)
60 TIGR00767 rho transcription te 100.0 1.2E-56 2.6E-61 467.6 23.1 243 144-409 150-396 (415)
61 cd01128 rho_factor Transcripti 100.0 5.8E-53 1.3E-57 420.2 21.4 239 149-410 3-245 (249)
62 COG1158 Rho Transcription term 100.0 5.8E-39 1.3E-43 322.3 19.8 296 81-406 93-398 (422)
63 PF00306 ATP-synt_ab_C: ATP sy 99.4 3.5E-12 7.5E-17 112.7 12.5 88 387-474 1-98 (113)
64 cd01120 RecA-like_NTPases RecA 99.2 1.6E-09 3.5E-14 98.1 17.1 160 165-357 2-165 (165)
65 PF02874 ATP-synt_ab_N: ATP sy 98.6 2.6E-07 5.7E-12 74.1 7.7 62 31-92 1-69 (69)
66 COG0467 RAD55 RecA-superfamily 98.5 2.1E-06 4.5E-11 86.2 13.9 183 144-364 3-200 (260)
67 PF06745 KaiC: KaiC; InterPro 98.4 9.8E-07 2.1E-11 86.4 9.8 173 147-358 2-186 (226)
68 PRK09302 circadian clock prote 98.2 1.5E-05 3.2E-10 87.8 14.3 188 142-372 251-449 (509)
69 cd01394 radB RadB. The archaea 98.2 1.1E-05 2.4E-10 78.4 10.5 116 146-270 1-119 (218)
70 TIGR03878 thermo_KaiC_2 KaiC d 98.1 9.7E-05 2.1E-09 74.5 15.8 59 146-204 4-78 (259)
71 PRK06067 flagellar accessory p 98.0 3.3E-05 7.1E-10 76.2 10.1 65 143-207 4-70 (234)
72 TIGR02655 circ_KaiC circadian 98.0 9.1E-05 2E-09 81.2 14.5 191 141-373 240-440 (484)
73 TIGR03877 thermo_KaiC_1 KaiC d 98.0 2.6E-05 5.7E-10 77.3 9.1 66 146-211 3-70 (237)
74 cd01123 Rad51_DMC1_radA Rad51_ 97.9 3.8E-05 8.3E-10 75.2 9.5 117 146-268 1-129 (235)
75 TIGR02012 tigrfam_recA protein 97.9 2.3E-05 4.9E-10 81.5 8.2 111 144-268 34-147 (321)
76 PRK04328 hypothetical protein; 97.9 4.3E-05 9.4E-10 76.5 9.8 67 145-211 4-72 (249)
77 PRK09354 recA recombinase A; P 97.9 2.5E-05 5.5E-10 81.9 8.2 111 143-268 38-152 (349)
78 PRK09361 radB DNA repair and r 97.9 6.4E-05 1.4E-09 73.5 10.2 117 143-269 2-122 (225)
79 TIGR03881 KaiC_arch_4 KaiC dom 97.9 0.00012 2.5E-09 71.8 12.0 63 146-208 2-66 (229)
80 PRK08533 flagellar accessory p 97.9 0.00022 4.8E-09 70.7 13.9 65 146-210 6-72 (230)
81 smart00382 AAA ATPases associa 97.9 4.5E-05 9.8E-10 65.9 7.9 99 161-276 1-100 (148)
82 cd00983 recA RecA is a bacter 97.9 2.7E-05 5.8E-10 81.1 7.2 110 144-268 34-147 (325)
83 cd01393 recA_like RecA is a b 97.9 7E-05 1.5E-09 72.9 9.8 117 146-269 1-129 (226)
84 TIGR02236 recomb_radA DNA repa 97.9 5.9E-05 1.3E-09 77.7 9.6 120 144-269 75-207 (310)
85 TIGR03880 KaiC_arch_3 KaiC dom 97.7 0.00072 1.6E-08 66.1 13.4 63 149-211 1-65 (224)
86 TIGR02238 recomb_DMC1 meiotic 97.7 0.00019 4.1E-09 74.5 9.4 121 142-269 74-206 (313)
87 PRK09302 circadian clock prote 97.7 0.00028 6.1E-09 77.7 11.2 69 144-212 11-82 (509)
88 TIGR02655 circ_KaiC circadian 97.6 0.0003 6.5E-09 77.2 11.3 68 145-212 2-72 (484)
89 PLN03187 meiotic recombination 97.6 0.0003 6.6E-09 73.9 10.4 121 142-269 104-236 (344)
90 TIGR02237 recomb_radB DNA repa 97.6 0.00038 8.3E-09 67.1 9.8 103 159-269 9-112 (209)
91 cd01124 KaiC KaiC is a circadi 97.5 0.0017 3.7E-08 60.9 13.0 48 165-212 2-49 (187)
92 TIGR00416 sms DNA repair prote 97.5 0.0012 2.6E-08 71.9 13.2 107 144-266 74-182 (454)
93 PRK09519 recA DNA recombinatio 97.5 0.0003 6.4E-09 80.7 8.8 109 144-267 39-151 (790)
94 PRK04301 radA DNA repair and r 97.5 0.00048 1E-08 71.4 9.6 120 144-269 82-213 (317)
95 cd01122 GP4d_helicase GP4d_hel 97.4 0.0014 3E-08 65.8 11.8 67 145-211 12-80 (271)
96 PTZ00035 Rad51 protein; Provis 97.3 0.0006 1.3E-08 71.5 8.4 123 139-268 93-227 (337)
97 PLN03186 DNA repair protein RA 97.3 0.0011 2.4E-08 69.7 10.1 120 143-269 102-233 (342)
98 PF00154 RecA: recA bacterial 97.3 0.00042 9.2E-09 72.1 6.7 109 144-267 32-144 (322)
99 PRK11823 DNA repair protein Ra 97.2 0.0017 3.6E-08 70.7 10.5 106 145-267 61-169 (446)
100 TIGR02239 recomb_RAD51 DNA rep 97.2 0.0015 3.3E-08 67.9 9.5 119 143-268 75-205 (316)
101 cd01121 Sms Sms (bacterial rad 97.2 0.0018 3.8E-08 68.9 10.1 108 144-267 62-171 (372)
102 PF08423 Rad51: Rad51; InterP 96.9 0.0034 7.4E-08 63.3 8.3 121 143-270 17-149 (256)
103 PF05496 RuvB_N: Holliday junc 96.9 0.0018 3.9E-08 64.2 6.0 28 164-192 52-79 (233)
104 PF13481 AAA_25: AAA domain; P 96.7 0.0047 1E-07 58.4 7.6 68 146-213 14-93 (193)
105 PF07088 GvpD: GvpD gas vesicl 96.7 0.0068 1.5E-07 64.3 9.3 105 156-263 4-115 (484)
106 PRK05973 replicative DNA helic 96.7 0.0086 1.9E-07 59.9 9.1 53 158-210 60-112 (237)
107 cd00009 AAA The AAA+ (ATPases 96.5 0.017 3.6E-07 50.3 8.7 39 161-200 18-57 (151)
108 COG2256 MGS1 ATPase related to 96.4 0.0083 1.8E-07 63.8 7.6 77 163-275 49-125 (436)
109 PF13173 AAA_14: AAA domain 96.4 0.013 2.8E-07 52.4 7.5 84 162-280 2-87 (128)
110 cd00544 CobU Adenosylcobinamid 96.4 0.012 2.6E-07 55.8 7.7 87 165-271 2-90 (169)
111 PF13401 AAA_22: AAA domain; P 96.3 0.0056 1.2E-07 53.9 4.5 90 162-267 4-100 (131)
112 PF05729 NACHT: NACHT domain 96.1 0.022 4.9E-07 51.6 8.1 88 164-271 2-98 (166)
113 cd03115 SRP The signal recogni 96.1 0.078 1.7E-06 49.5 11.6 47 165-211 3-49 (173)
114 PF04665 Pox_A32: Poxvirus A32 96.0 0.02 4.3E-07 57.5 7.6 45 164-209 15-59 (241)
115 COG0468 RecA RecA/RadA recombi 95.9 0.03 6.6E-07 57.3 8.7 113 143-270 39-157 (279)
116 PF01637 Arch_ATPase: Archaeal 95.8 0.0042 9.2E-08 59.5 1.8 101 160-267 18-131 (234)
117 PRK05800 cobU adenosylcobinami 95.8 0.018 3.8E-07 54.7 5.9 38 164-204 3-40 (170)
118 PRK08181 transposase; Validate 95.7 0.027 5.9E-07 57.3 7.1 46 160-213 104-150 (269)
119 PRK09183 transposase/IS protei 95.6 0.024 5.3E-07 57.2 6.4 32 153-185 93-124 (259)
120 PRK00411 cdc6 cell division co 95.6 0.043 9.2E-07 58.0 8.3 118 133-267 29-151 (394)
121 COG1066 Sms Predicted ATP-depe 95.5 0.028 6.1E-07 60.0 6.8 104 145-265 74-179 (456)
122 PRK04296 thymidine kinase; Pro 95.5 0.051 1.1E-06 52.2 7.8 35 162-196 2-36 (190)
123 cd01125 repA Hexameric Replica 95.5 0.09 1.9E-06 52.0 9.8 51 162-212 1-63 (239)
124 TIGR02688 conserved hypothetic 95.5 0.059 1.3E-06 58.2 8.9 185 160-423 207-406 (449)
125 PF00004 AAA: ATPase family as 95.3 0.063 1.4E-06 46.9 7.2 32 165-199 1-32 (132)
126 TIGR00635 ruvB Holliday juncti 95.3 0.044 9.4E-07 55.9 7.0 30 162-192 30-59 (305)
127 PRK14974 cell division protein 95.2 0.14 3.1E-06 53.8 10.6 104 160-275 138-246 (336)
128 cd00984 DnaB_C DnaB helicase C 95.2 0.024 5.2E-07 55.7 4.5 54 154-207 4-59 (242)
129 PRK06526 transposase; Provisio 95.1 0.039 8.4E-07 55.7 6.0 45 161-213 97-142 (254)
130 PRK10416 signal recognition pa 95.0 0.17 3.6E-06 52.8 10.6 39 160-199 112-151 (318)
131 PF00931 NB-ARC: NB-ARC domain 95.0 0.045 9.8E-07 54.9 6.1 44 160-204 17-63 (287)
132 PF03796 DnaB_C: DnaB-like hel 94.9 0.027 5.9E-07 56.3 4.1 61 146-206 2-64 (259)
133 COG1116 TauB ABC-type nitrate/ 94.8 0.018 4E-07 57.7 2.6 35 150-185 16-51 (248)
134 cd04168 TetM_like Tet(M)-like 94.7 0.6 1.3E-05 46.5 13.2 70 245-314 108-187 (237)
135 TIGR02928 orc1/cdc6 family rep 94.7 0.096 2.1E-06 54.7 7.8 95 160-267 38-142 (365)
136 PRK13342 recombination factor 94.6 0.11 2.4E-06 55.8 8.4 31 161-192 35-65 (413)
137 PRK12377 putative replication 94.5 0.089 1.9E-06 53.0 6.8 35 162-197 101-136 (248)
138 PRK00080 ruvB Holliday junctio 94.5 0.094 2E-06 54.5 7.2 29 162-191 51-79 (328)
139 TIGR00665 DnaB replicative DNA 94.5 0.049 1.1E-06 58.8 5.1 63 144-206 176-240 (434)
140 COG2255 RuvB Holliday junction 94.5 0.033 7.1E-07 57.0 3.5 134 164-361 54-188 (332)
141 TIGR02881 spore_V_K stage V sp 94.4 0.099 2.1E-06 52.5 6.9 27 158-185 38-64 (261)
142 TIGR00064 ftsY signal recognit 94.3 0.42 9.1E-06 48.8 11.3 50 159-208 69-119 (272)
143 PTZ00454 26S protease regulato 94.3 0.14 3.1E-06 55.0 8.2 29 162-191 179-207 (398)
144 PF13191 AAA_16: AAA ATPase do 94.3 0.13 2.7E-06 47.8 6.9 45 156-201 18-63 (185)
145 PRK07261 topology modulation p 94.3 0.087 1.9E-06 49.7 5.8 23 163-186 1-23 (171)
146 PF00308 Bac_DnaA: Bacterial d 94.3 0.16 3.4E-06 50.0 7.8 37 162-199 34-73 (219)
147 PRK08727 hypothetical protein; 94.2 0.18 4E-06 49.9 8.1 39 163-202 42-81 (233)
148 cd03222 ABC_RNaseL_inhibitor T 94.1 0.033 7.1E-07 53.2 2.5 34 152-186 15-48 (177)
149 TIGR03015 pepcterm_ATPase puta 94.1 0.45 9.7E-06 47.3 10.8 25 163-188 44-68 (269)
150 PF13671 AAA_33: AAA domain; P 94.1 0.24 5.2E-06 44.2 7.9 23 165-188 2-24 (143)
151 TIGR03600 phage_DnaB phage rep 94.1 0.065 1.4E-06 57.7 5.0 62 144-205 175-238 (421)
152 TIGR02211 LolD_lipo_ex lipopro 94.0 0.033 7.2E-07 54.0 2.5 29 157-186 26-54 (221)
153 cd03229 ABC_Class3 This class 94.0 0.035 7.5E-07 52.4 2.5 29 157-186 21-49 (178)
154 COG1124 DppF ABC-type dipeptid 94.0 0.047 1E-06 54.7 3.4 34 151-185 21-55 (252)
155 PRK05748 replicative DNA helic 93.9 0.076 1.7E-06 57.7 5.3 63 144-206 184-248 (448)
156 PRK10867 signal recognition pa 93.9 0.3 6.6E-06 53.1 9.8 94 162-266 100-195 (433)
157 COG0194 Gmk Guanylate kinase [ 93.9 0.36 7.7E-06 46.7 9.1 87 161-261 3-101 (191)
158 PF13521 AAA_28: AAA domain; P 93.9 0.051 1.1E-06 50.3 3.4 34 164-205 1-34 (163)
159 TIGR03608 L_ocin_972_ABC putat 93.9 0.036 7.8E-07 53.1 2.4 29 157-186 19-47 (206)
160 PRK12724 flagellar biosynthesi 93.9 0.19 4.1E-06 54.4 8.0 41 160-200 221-262 (432)
161 cd03260 ABC_PstB_phosphate_tra 93.9 0.037 8E-07 54.0 2.5 30 157-187 21-50 (227)
162 cd03269 ABC_putative_ATPase Th 93.9 0.038 8.3E-07 53.3 2.5 30 156-186 20-49 (210)
163 TIGR02315 ABC_phnC phosphonate 93.8 0.039 8.4E-07 54.4 2.5 29 157-186 23-51 (243)
164 cd03238 ABC_UvrA The excision 93.8 0.041 8.9E-07 52.5 2.5 27 157-184 16-42 (176)
165 TIGR01166 cbiO cobalt transpor 93.8 0.059 1.3E-06 51.2 3.6 29 157-186 13-41 (190)
166 TIGR00750 lao LAO/AO transport 93.8 0.27 5.9E-06 50.6 8.8 41 158-199 30-71 (300)
167 cd03292 ABC_FtsE_transporter F 93.8 0.04 8.7E-07 53.2 2.5 29 157-186 22-50 (214)
168 cd03254 ABCC_Glucan_exporter_l 93.7 0.041 8.9E-07 53.7 2.5 30 157-187 24-53 (229)
169 PLN00020 ribulose bisphosphate 93.7 0.14 3.1E-06 54.5 6.6 73 165-266 151-224 (413)
170 TIGR00960 3a0501s02 Type II (G 93.7 0.041 8.8E-07 53.3 2.5 29 157-186 24-52 (216)
171 cd03224 ABC_TM1139_LivF_branch 93.7 0.04 8.6E-07 53.5 2.3 29 157-186 21-49 (222)
172 PF13086 AAA_11: AAA domain; P 93.7 0.12 2.7E-06 49.3 5.6 49 164-214 19-75 (236)
173 PHA02542 41 41 helicase; Provi 93.6 0.083 1.8E-06 58.1 4.9 64 144-207 170-235 (473)
174 COG2874 FlaH Predicted ATPases 93.6 0.81 1.8E-05 45.3 11.1 158 162-359 28-192 (235)
175 PRK13539 cytochrome c biogenes 93.6 0.044 9.5E-07 53.0 2.5 29 157-186 23-51 (207)
176 PRK11124 artP arginine transpo 93.6 0.044 9.6E-07 54.1 2.5 29 157-186 23-51 (242)
177 PF00005 ABC_tran: ABC transpo 93.6 0.035 7.7E-07 49.4 1.7 30 157-187 6-35 (137)
178 cd00820 PEPCK_HprK Phosphoenol 93.6 0.044 9.5E-07 48.3 2.2 27 157-184 10-36 (107)
179 cd03262 ABC_HisP_GlnQ_permease 93.6 0.045 9.9E-07 52.7 2.5 29 157-186 21-49 (213)
180 cd03258 ABC_MetN_methionine_tr 93.6 0.045 9.7E-07 53.7 2.5 29 157-186 26-54 (233)
181 PF01695 IstB_IS21: IstB-like 93.6 0.064 1.4E-06 51.1 3.5 49 159-214 44-92 (178)
182 PF13245 AAA_19: Part of AAA d 93.6 0.17 3.8E-06 41.6 5.6 49 162-212 9-62 (76)
183 cd03256 ABC_PhnC_transporter A 93.6 0.046 9.9E-07 53.7 2.5 29 157-186 22-50 (241)
184 cd03225 ABC_cobalt_CbiO_domain 93.5 0.046 1E-06 52.7 2.4 29 157-186 22-50 (211)
185 PRK14247 phosphate ABC transpo 93.5 0.047 1E-06 54.2 2.5 29 157-186 24-52 (250)
186 cd03259 ABC_Carb_Solutes_like 93.5 0.047 1E-06 52.7 2.5 29 157-186 21-49 (213)
187 PRK06921 hypothetical protein; 93.5 0.16 3.6E-06 51.5 6.5 46 152-198 105-154 (266)
188 cd03226 ABC_cobalt_CbiO_domain 93.5 0.047 1E-06 52.5 2.4 29 157-186 21-49 (205)
189 cd00227 CPT Chloramphenicol (C 93.5 0.31 6.7E-06 45.8 7.9 26 161-187 1-26 (175)
190 cd03296 ABC_CysA_sulfate_impor 93.5 0.048 1E-06 53.8 2.5 29 157-186 23-51 (239)
191 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.4 0.049 1.1E-06 52.8 2.4 29 157-186 25-53 (218)
192 cd03218 ABC_YhbG The ABC trans 93.4 0.05 1.1E-06 53.2 2.5 29 157-186 21-49 (232)
193 PRK08084 DNA replication initi 93.4 0.067 1.5E-06 53.1 3.4 38 160-198 43-81 (235)
194 PF09848 DUF2075: Uncharacteri 93.4 0.33 7.2E-06 51.0 8.8 23 164-186 3-25 (352)
195 cd03216 ABC_Carb_Monos_I This 93.4 0.052 1.1E-06 50.6 2.4 30 157-187 21-50 (163)
196 TIGR02673 FtsE cell division A 93.4 0.052 1.1E-06 52.4 2.5 29 157-186 23-51 (214)
197 cd03230 ABC_DR_subfamily_A Thi 93.4 0.052 1.1E-06 51.0 2.4 29 157-186 21-49 (173)
198 PRK09165 replicative DNA helic 93.4 0.096 2.1E-06 57.9 4.9 43 144-186 198-241 (497)
199 TIGR03864 PQQ_ABC_ATP ABC tran 93.3 0.052 1.1E-06 53.5 2.5 29 157-186 22-50 (236)
200 COG1155 NtpA Archaeal/vacuolar 93.3 1.2 2.5E-05 49.3 12.8 197 228-448 291-490 (588)
201 TIGR03410 urea_trans_UrtE urea 93.3 0.053 1.1E-06 53.1 2.5 30 156-186 20-49 (230)
202 cd03293 ABC_NrtD_SsuB_transpor 93.3 0.051 1.1E-06 52.8 2.3 29 157-186 25-53 (220)
203 PRK10895 lipopolysaccharide AB 93.3 0.053 1.2E-06 53.5 2.5 29 157-186 24-52 (241)
204 cd03219 ABC_Mj1267_LivG_branch 93.3 0.05 1.1E-06 53.4 2.3 29 157-186 21-49 (236)
205 cd03301 ABC_MalK_N The N-termi 93.3 0.055 1.2E-06 52.2 2.5 29 157-186 21-49 (213)
206 cd03287 ABC_MSH3_euk MutS3 hom 93.3 0.65 1.4E-05 46.0 10.1 35 150-185 19-53 (222)
207 PRK14267 phosphate ABC transpo 93.3 0.055 1.2E-06 53.8 2.5 29 157-186 25-53 (253)
208 PRK14255 phosphate ABC transpo 93.2 0.055 1.2E-06 53.8 2.5 28 157-185 26-53 (252)
209 PRK13540 cytochrome c biogenes 93.2 0.085 1.8E-06 50.6 3.7 29 157-186 22-50 (200)
210 PRK13543 cytochrome c biogenes 93.2 0.055 1.2E-06 52.6 2.4 29 157-186 32-60 (214)
211 cd03298 ABC_ThiQ_thiamine_tran 93.2 0.056 1.2E-06 52.1 2.5 32 154-186 16-47 (211)
212 cd03265 ABC_DrrA DrrA is the A 93.2 0.058 1.3E-06 52.5 2.6 31 155-186 19-49 (220)
213 cd03235 ABC_Metallic_Cations A 93.2 0.052 1.1E-06 52.5 2.2 29 157-186 20-48 (213)
214 PRK13541 cytochrome c biogenes 93.2 0.057 1.2E-06 51.6 2.5 33 153-186 17-49 (195)
215 PRK11248 tauB taurine transpor 93.2 0.056 1.2E-06 54.2 2.5 29 157-186 22-50 (255)
216 cd03257 ABC_NikE_OppD_transpor 93.2 0.059 1.3E-06 52.4 2.6 29 157-186 26-54 (228)
217 cd03215 ABC_Carb_Monos_II This 93.1 0.057 1.2E-06 51.1 2.4 29 157-186 21-49 (182)
218 PRK09435 membrane ATPase/prote 93.1 0.4 8.7E-06 50.4 8.8 47 153-200 46-94 (332)
219 cd01853 Toc34_like Toc34-like 93.1 1.9 4.1E-05 43.5 13.3 25 162-187 31-55 (249)
220 cd03295 ABC_OpuCA_Osmoprotecti 93.1 0.06 1.3E-06 53.2 2.5 29 157-186 22-50 (242)
221 cd03261 ABC_Org_Solvent_Resist 93.1 0.059 1.3E-06 53.0 2.4 29 157-186 21-49 (235)
222 cd03250 ABCC_MRP_domain1 Domai 93.1 0.065 1.4E-06 51.5 2.7 29 157-186 26-54 (204)
223 COG4619 ABC-type uncharacteriz 93.1 0.088 1.9E-06 50.4 3.4 33 157-190 24-56 (223)
224 cd03266 ABC_NatA_sodium_export 93.1 0.06 1.3E-06 52.1 2.5 29 157-186 26-54 (218)
225 cd03246 ABCC_Protease_Secretio 93.1 0.064 1.4E-06 50.3 2.5 29 157-186 23-51 (173)
226 cd03270 ABC_UvrA_I The excisio 93.0 0.065 1.4E-06 52.8 2.7 27 157-183 16-42 (226)
227 TIGR01978 sufC FeS assembly AT 93.0 0.064 1.4E-06 52.8 2.6 30 156-186 20-49 (243)
228 PRK08506 replicative DNA helic 93.0 0.13 2.7E-06 56.6 5.2 62 145-206 174-236 (472)
229 COG1474 CDC6 Cdc6-related prot 93.0 0.37 7.9E-06 51.3 8.4 89 164-267 44-136 (366)
230 TIGR03005 ectoine_ehuA ectoine 93.0 0.061 1.3E-06 53.5 2.5 29 157-186 21-49 (252)
231 PRK08118 topology modulation p 93.0 0.08 1.7E-06 49.8 3.1 24 163-187 2-25 (167)
232 cd03263 ABC_subfamily_A The AB 93.0 0.063 1.4E-06 52.1 2.5 29 157-186 23-51 (220)
233 cd03268 ABC_BcrA_bacitracin_re 93.0 0.063 1.4E-06 51.7 2.4 29 157-186 21-49 (208)
234 PRK14262 phosphate ABC transpo 93.0 0.063 1.4E-06 53.3 2.5 29 157-186 24-52 (250)
235 PRK06893 DNA replication initi 93.0 0.29 6.2E-06 48.4 7.1 21 165-186 42-62 (229)
236 TIGR00968 3a0106s01 sulfate AB 93.0 0.064 1.4E-06 53.0 2.5 29 157-186 21-49 (237)
237 cd03217 ABC_FeS_Assembly ABC-t 93.0 0.068 1.5E-06 51.4 2.6 30 156-186 20-49 (200)
238 cd03236 ABC_RNaseL_inhibitor_d 92.9 0.075 1.6E-06 53.5 3.0 34 153-187 17-50 (255)
239 cd03290 ABCC_SUR1_N The SUR do 92.9 0.065 1.4E-06 52.1 2.5 29 157-186 22-50 (218)
240 PRK10771 thiQ thiamine transpo 92.9 0.063 1.4E-06 52.7 2.4 32 154-186 17-48 (232)
241 TIGR00959 ffh signal recogniti 92.9 0.69 1.5E-05 50.3 10.5 94 163-266 100-194 (428)
242 PRK11629 lolD lipoprotein tran 92.9 0.065 1.4E-06 52.7 2.5 29 157-186 30-58 (233)
243 cd03251 ABCC_MsbA MsbA is an e 92.9 0.065 1.4E-06 52.5 2.5 29 157-186 23-51 (234)
244 cd03245 ABCC_bacteriocin_expor 92.9 0.065 1.4E-06 52.0 2.5 29 157-186 25-53 (220)
245 PRK14241 phosphate transporter 92.9 0.063 1.4E-06 53.7 2.4 29 157-186 25-53 (258)
246 PRK10908 cell division protein 92.9 0.067 1.5E-06 52.1 2.5 29 157-186 23-51 (222)
247 PRK14240 phosphate transporter 92.9 0.067 1.4E-06 53.1 2.5 32 154-186 21-52 (250)
248 PRK15177 Vi polysaccharide exp 92.9 0.068 1.5E-06 52.1 2.5 29 157-186 8-36 (213)
249 cd03231 ABC_CcmA_heme_exporter 92.9 0.07 1.5E-06 51.3 2.5 31 156-187 20-50 (201)
250 PRK14242 phosphate transporter 92.9 0.066 1.4E-06 53.2 2.4 29 157-186 27-55 (253)
251 PRK11701 phnK phosphonate C-P 92.9 0.065 1.4E-06 53.6 2.4 31 155-186 25-55 (258)
252 cd00561 CobA_CobO_BtuR ATP:cor 92.8 0.81 1.8E-05 43.1 9.5 96 164-266 4-107 (159)
253 PRK14274 phosphate ABC transpo 92.8 0.067 1.5E-06 53.5 2.4 29 157-186 33-61 (259)
254 TIGR01425 SRP54_euk signal rec 92.8 0.64 1.4E-05 50.5 10.0 49 162-211 100-149 (429)
255 COG2087 CobU Adenosyl cobinami 92.8 0.35 7.6E-06 45.9 7.0 88 164-270 2-91 (175)
256 TIGR03411 urea_trans_UrtD urea 92.8 0.068 1.5E-06 52.7 2.4 29 157-186 23-51 (242)
257 PRK14239 phosphate transporter 92.8 0.068 1.5E-06 53.0 2.4 28 157-185 26-53 (252)
258 TIGR03420 DnaA_homol_Hda DnaA 92.8 0.073 1.6E-06 51.6 2.6 45 153-198 29-74 (226)
259 TIGR01184 ntrCD nitrate transp 92.8 0.07 1.5E-06 52.5 2.5 29 157-186 6-34 (230)
260 PRK14248 phosphate ABC transpo 92.8 0.069 1.5E-06 53.8 2.5 29 157-186 42-70 (268)
261 cd03248 ABCC_TAP TAP, the Tran 92.8 0.071 1.5E-06 52.0 2.5 29 157-186 35-63 (226)
262 PRK08939 primosomal protein Dn 92.8 0.21 4.5E-06 51.9 6.0 55 151-213 145-200 (306)
263 cd03249 ABC_MTABC3_MDL1_MDL2 M 92.8 0.069 1.5E-06 52.5 2.4 30 156-186 23-52 (238)
264 TIGR02770 nickel_nikD nickel i 92.7 0.071 1.5E-06 52.3 2.5 30 157-187 7-36 (230)
265 COG1126 GlnQ ABC-type polar am 92.7 0.073 1.6E-06 52.6 2.5 28 157-185 23-50 (240)
266 PRK11264 putative amino-acid A 92.7 0.075 1.6E-06 52.7 2.6 29 157-186 24-52 (250)
267 CHL00181 cbbX CbbX; Provisiona 92.7 0.29 6.4E-06 50.2 7.0 28 157-185 54-81 (287)
268 PRK09493 glnQ glutamine ABC tr 92.7 0.072 1.6E-06 52.5 2.5 29 157-186 22-50 (240)
269 PTZ00361 26 proteosome regulat 92.7 0.92 2E-05 49.5 11.1 29 162-191 217-245 (438)
270 PRK10253 iron-enterobactin tra 92.7 0.067 1.5E-06 53.8 2.3 29 157-186 28-56 (265)
271 cd03213 ABCG_EPDR ABCG transpo 92.7 0.075 1.6E-06 50.9 2.5 30 157-187 30-59 (194)
272 PRK10584 putative ABC transpor 92.7 0.075 1.6E-06 51.9 2.5 30 157-187 31-60 (228)
273 COG1222 RPT1 ATP-dependent 26S 92.7 0.18 3.9E-06 53.2 5.4 59 164-226 187-251 (406)
274 COG3840 ThiQ ABC-type thiamine 92.7 0.079 1.7E-06 51.3 2.5 30 156-186 19-48 (231)
275 TIGR01242 26Sp45 26S proteasom 92.6 0.35 7.5E-06 51.1 7.7 28 163-191 157-184 (364)
276 PRK14237 phosphate transporter 92.6 0.075 1.6E-06 53.6 2.5 29 157-186 41-69 (267)
277 cd03252 ABCC_Hemolysin The ABC 92.6 0.075 1.6E-06 52.2 2.5 30 156-186 22-51 (237)
278 PRK14250 phosphate ABC transpo 92.6 0.076 1.6E-06 52.6 2.5 31 155-186 22-52 (241)
279 PRK09087 hypothetical protein; 92.6 0.31 6.7E-06 48.3 6.8 25 162-187 44-68 (226)
280 TIGR03740 galliderm_ABC gallid 92.6 0.077 1.7E-06 51.7 2.5 29 157-186 21-49 (223)
281 PRK13632 cbiO cobalt transport 92.6 0.074 1.6E-06 53.7 2.4 29 157-186 30-58 (271)
282 KOG0057|consensus 92.6 0.11 2.4E-06 57.3 3.8 35 152-187 367-402 (591)
283 PRK10247 putative ABC transpor 92.6 0.08 1.7E-06 51.9 2.6 29 157-186 28-56 (225)
284 PF13207 AAA_17: AAA domain; P 92.6 0.081 1.7E-06 46.0 2.3 23 164-187 1-23 (121)
285 PRK14270 phosphate ABC transpo 92.6 0.078 1.7E-06 52.7 2.5 29 157-186 25-53 (251)
286 PRK14722 flhF flagellar biosyn 92.6 0.91 2E-05 48.5 10.7 42 143-185 117-159 (374)
287 cd03223 ABCD_peroxisomal_ALDP 92.6 0.084 1.8E-06 49.4 2.6 29 157-186 22-50 (166)
288 PRK14957 DNA polymerase III su 92.6 0.55 1.2E-05 52.6 9.4 110 160-282 35-148 (546)
289 TIGR00972 3a0107s01c2 phosphat 92.6 0.078 1.7E-06 52.6 2.5 30 156-186 21-50 (247)
290 PRK14253 phosphate ABC transpo 92.5 0.081 1.8E-06 52.5 2.5 29 157-186 24-52 (249)
291 cd03247 ABCC_cytochrome_bd The 92.5 0.08 1.7E-06 49.8 2.4 31 156-187 22-52 (178)
292 PRK14256 phosphate ABC transpo 92.5 0.08 1.7E-06 52.6 2.5 29 157-186 25-53 (252)
293 PRK10418 nikD nickel transport 92.5 0.079 1.7E-06 52.9 2.5 30 156-186 23-52 (254)
294 PRK10575 iron-hydroxamate tran 92.5 0.074 1.6E-06 53.5 2.3 29 157-186 32-60 (265)
295 PRK14272 phosphate ABC transpo 92.5 0.082 1.8E-06 52.5 2.5 29 157-186 25-53 (252)
296 PRK14960 DNA polymerase III su 92.5 0.52 1.1E-05 53.8 9.0 107 163-282 38-147 (702)
297 TIGR01189 ccmA heme ABC export 92.5 0.083 1.8E-06 50.6 2.5 30 156-186 20-49 (198)
298 PRK14273 phosphate ABC transpo 92.5 0.085 1.8E-06 52.5 2.6 29 157-186 28-56 (254)
299 CHL00195 ycf46 Ycf46; Provisio 92.4 0.46 1E-05 52.5 8.5 60 164-227 261-326 (489)
300 PF14516 AAA_35: AAA-like doma 92.4 0.17 3.6E-06 53.0 4.9 146 128-303 5-162 (331)
301 PRK14244 phosphate ABC transpo 92.4 0.084 1.8E-06 52.5 2.5 29 157-186 26-54 (251)
302 COG0444 DppD ABC-type dipeptid 92.4 0.085 1.8E-06 54.7 2.6 35 150-185 18-53 (316)
303 PRK11831 putative ABC transpor 92.4 0.08 1.7E-06 53.4 2.3 31 155-186 26-56 (269)
304 PRK13645 cbiO cobalt transport 92.4 0.08 1.7E-06 54.0 2.3 29 157-186 32-60 (289)
305 TIGR01288 nodI ATP-binding ABC 92.4 0.083 1.8E-06 54.3 2.5 29 157-186 25-53 (303)
306 PRK09544 znuC high-affinity zi 92.4 0.084 1.8E-06 52.9 2.5 29 157-186 25-53 (251)
307 PRK14238 phosphate transporter 92.4 0.085 1.8E-06 53.3 2.5 29 157-186 45-73 (271)
308 PRK11300 livG leucine/isoleuci 92.4 0.08 1.7E-06 52.6 2.3 29 157-186 26-54 (255)
309 TIGR02324 CP_lyasePhnL phospho 92.3 0.089 1.9E-06 51.2 2.6 29 157-186 29-57 (224)
310 PRK11614 livF leucine/isoleuci 92.3 0.078 1.7E-06 52.2 2.2 29 157-186 26-54 (237)
311 PF00448 SRP54: SRP54-type pro 92.3 0.67 1.5E-05 44.9 8.6 44 164-207 3-47 (196)
312 PRK14266 phosphate ABC transpo 92.3 0.086 1.9E-06 52.3 2.5 30 156-186 23-52 (250)
313 PRK13649 cbiO cobalt transport 92.3 0.082 1.8E-06 53.5 2.4 29 157-186 28-56 (280)
314 TIGR03771 anch_rpt_ABC anchore 92.3 0.095 2.1E-06 51.3 2.7 28 158-186 2-29 (223)
315 cd03233 ABC_PDR_domain1 The pl 92.3 0.077 1.7E-06 51.2 2.1 29 157-186 28-56 (202)
316 TIGR02323 CP_lyasePhnK phospho 92.3 0.088 1.9E-06 52.3 2.5 29 157-186 24-52 (253)
317 PRK15056 manganese/iron transp 92.3 0.085 1.8E-06 53.3 2.4 31 155-186 26-56 (272)
318 PRK14251 phosphate ABC transpo 92.3 0.09 2E-06 52.2 2.5 29 157-186 25-53 (251)
319 PRK11247 ssuB aliphatic sulfon 92.2 0.089 1.9E-06 53.0 2.5 30 156-186 32-61 (257)
320 cd03267 ABC_NatA_like Similar 92.2 0.09 1.9E-06 51.9 2.4 29 157-186 42-70 (236)
321 PRK14268 phosphate ABC transpo 92.2 0.09 2E-06 52.6 2.5 29 157-186 33-61 (258)
322 CHL00131 ycf16 sulfate ABC tra 92.2 0.084 1.8E-06 52.4 2.2 29 157-186 28-56 (252)
323 cd03214 ABC_Iron-Siderophores_ 92.2 0.13 2.9E-06 48.5 3.5 29 157-186 20-48 (180)
324 PF12775 AAA_7: P-loop contain 92.2 0.24 5.1E-06 50.5 5.5 27 160-187 31-57 (272)
325 COG1134 TagH ABC-type polysacc 92.2 0.094 2E-06 52.6 2.5 32 154-186 45-76 (249)
326 PRK09984 phosphonate/organopho 92.2 0.091 2E-06 52.6 2.4 30 157-187 25-54 (262)
327 TIGR03598 GTPase_YsxC ribosome 92.2 1.3 2.8E-05 41.4 10.1 24 162-186 18-41 (179)
328 cd03294 ABC_Pro_Gly_Bertaine T 92.2 0.093 2E-06 53.0 2.5 29 157-186 45-73 (269)
329 PRK14269 phosphate ABC transpo 92.2 0.092 2E-06 52.1 2.4 30 156-186 22-51 (246)
330 PRK05703 flhF flagellar biosyn 92.2 0.89 1.9E-05 49.3 10.2 42 159-200 218-261 (424)
331 cd03228 ABCC_MRP_Like The MRP 92.1 0.1 2.2E-06 48.9 2.5 29 157-186 23-51 (171)
332 PRK14243 phosphate transporter 92.1 0.098 2.1E-06 52.6 2.6 29 156-185 30-58 (264)
333 PRK10619 histidine/lysine/argi 92.1 0.095 2.1E-06 52.3 2.5 29 157-186 26-54 (257)
334 PRK13546 teichoic acids export 92.1 0.092 2E-06 53.1 2.4 32 154-186 42-73 (264)
335 TIGR01188 drrA daunorubicin re 92.1 0.094 2E-06 53.9 2.5 29 157-186 14-42 (302)
336 PRK13538 cytochrome c biogenes 92.1 0.1 2.2E-06 50.3 2.5 32 154-186 19-50 (204)
337 PRK14249 phosphate ABC transpo 92.1 0.097 2.1E-06 52.0 2.5 29 157-186 25-53 (251)
338 cd03283 ABC_MutS-like MutS-lik 92.1 0.87 1.9E-05 44.1 9.1 23 161-184 24-46 (199)
339 PRK13548 hmuV hemin importer A 92.1 0.094 2E-06 52.6 2.4 29 157-186 23-51 (258)
340 PRK13638 cbiO cobalt transport 92.0 0.091 2E-06 53.0 2.3 29 157-186 22-50 (271)
341 TIGR02769 nickel_nikE nickel i 92.0 0.1 2.2E-06 52.5 2.6 31 155-186 30-60 (265)
342 TIGR00362 DnaA chromosomal rep 92.0 0.24 5.3E-06 53.0 5.7 35 162-197 136-173 (405)
343 PRK14260 phosphate ABC transpo 92.0 0.098 2.1E-06 52.4 2.5 29 157-186 28-56 (259)
344 cd03253 ABCC_ATM1_transporter 92.0 0.099 2.1E-06 51.3 2.4 30 156-186 21-50 (236)
345 cd03237 ABC_RNaseL_inhibitor_d 92.0 0.11 2.3E-06 52.1 2.7 28 158-186 21-48 (246)
346 PRK14265 phosphate ABC transpo 92.0 0.1 2.2E-06 52.9 2.5 28 157-185 41-68 (274)
347 PF01583 APS_kinase: Adenylyls 92.0 0.31 6.6E-06 45.8 5.6 86 161-266 1-87 (156)
348 COG1136 SalX ABC-type antimicr 92.0 0.1 2.2E-06 51.9 2.5 35 150-185 18-53 (226)
349 PRK14235 phosphate transporter 92.0 0.1 2.2E-06 52.6 2.6 29 157-186 40-68 (267)
350 cd03232 ABC_PDR_domain2 The pl 92.0 0.099 2.1E-06 50.0 2.3 28 157-185 28-55 (192)
351 PF08477 Miro: Miro-like prote 92.0 0.11 2.4E-06 44.7 2.5 24 164-188 1-24 (119)
352 PRK05642 DNA replication initi 92.0 0.15 3.2E-06 50.7 3.6 34 164-198 47-81 (234)
353 PRK13641 cbiO cobalt transport 91.9 0.096 2.1E-06 53.4 2.3 29 157-186 28-56 (287)
354 PRK05595 replicative DNA helic 91.9 0.21 4.5E-06 54.4 5.1 61 145-205 183-245 (444)
355 PRK10419 nikE nickel transport 91.9 0.1 2.2E-06 52.7 2.5 30 156-186 32-61 (268)
356 PRK14261 phosphate ABC transpo 91.9 0.1 2.2E-06 52.0 2.4 28 157-185 27-54 (253)
357 cd03369 ABCC_NFT1 Domain 2 of 91.9 0.11 2.4E-06 50.1 2.6 29 157-186 29-57 (207)
358 PRK10744 pstB phosphate transp 91.9 0.1 2.2E-06 52.2 2.5 29 157-186 34-62 (260)
359 PRK14245 phosphate ABC transpo 91.9 0.1 2.2E-06 51.8 2.4 29 156-185 23-51 (250)
360 TIGR01313 therm_gnt_kin carboh 91.9 0.85 1.8E-05 42.0 8.4 22 165-187 1-22 (163)
361 COG0552 FtsY Signal recognitio 91.9 0.43 9.2E-06 50.0 6.9 87 162-259 139-227 (340)
362 PRK08903 DnaA regulatory inact 91.9 0.65 1.4E-05 45.3 8.0 40 160-200 40-80 (227)
363 TIGR03689 pup_AAA proteasome A 91.9 2.7 5.9E-05 46.8 13.6 23 164-187 218-240 (512)
364 cd03300 ABC_PotA_N PotA is an 91.9 0.17 3.7E-06 49.7 3.9 30 157-187 21-50 (232)
365 PRK10851 sulfate/thiosulfate t 91.8 0.1 2.2E-06 55.2 2.4 35 152-187 17-52 (353)
366 TIGR01277 thiQ thiamine ABC tr 91.8 0.1 2.3E-06 50.5 2.4 32 154-186 16-47 (213)
367 PRK15093 antimicrobial peptide 91.8 0.11 2.3E-06 54.4 2.5 36 150-186 20-56 (330)
368 PF01926 MMR_HSR1: 50S ribosom 91.8 0.099 2.1E-06 45.3 2.0 22 164-186 1-22 (116)
369 cd00267 ABC_ATPase ABC (ATP-bi 91.8 0.11 2.4E-06 47.7 2.4 33 154-187 17-49 (157)
370 PRK14271 phosphate ABC transpo 91.8 0.11 2.3E-06 52.8 2.5 32 154-186 39-70 (276)
371 PRK14264 phosphate ABC transpo 91.8 0.11 2.3E-06 53.6 2.5 30 156-186 65-94 (305)
372 PRK11231 fecE iron-dicitrate t 91.8 0.11 2.3E-06 51.9 2.4 29 157-186 23-51 (255)
373 PRK14087 dnaA chromosomal repl 91.8 0.42 9.1E-06 52.2 7.1 35 164-199 143-180 (450)
374 PRK13643 cbiO cobalt transport 91.7 0.1 2.2E-06 53.3 2.3 32 154-186 24-55 (288)
375 COG3842 PotA ABC-type spermidi 91.7 0.11 2.5E-06 54.8 2.6 36 149-185 17-53 (352)
376 TIGR02982 heterocyst_DevA ABC 91.7 0.11 2.5E-06 50.5 2.5 29 157-186 26-54 (220)
377 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 91.7 0.11 2.3E-06 51.0 2.3 29 157-186 43-71 (224)
378 TIGR02880 cbbX_cfxQ probable R 91.7 1.7 3.6E-05 44.5 11.1 18 162-179 58-75 (284)
379 cd03244 ABCC_MRP_domain2 Domai 91.7 0.12 2.5E-06 50.2 2.5 29 157-186 25-53 (221)
380 PF13555 AAA_29: P-loop contai 91.7 0.15 3.2E-06 40.6 2.6 22 162-184 23-44 (62)
381 PRK13547 hmuV hemin importer A 91.7 0.11 2.5E-06 52.7 2.5 29 157-186 22-50 (272)
382 PRK15112 antimicrobial peptide 91.7 0.11 2.5E-06 52.2 2.5 31 155-186 32-62 (267)
383 PRK11432 fbpC ferric transport 91.6 0.11 2.4E-06 54.9 2.4 31 155-186 25-55 (351)
384 cd03264 ABC_drug_resistance_li 91.6 0.12 2.5E-06 49.9 2.4 28 157-186 21-48 (211)
385 PRK13639 cbiO cobalt transport 91.6 0.11 2.4E-06 52.6 2.4 29 157-186 23-51 (275)
386 TIGR03499 FlhF flagellar biosy 91.6 0.35 7.7E-06 49.4 6.1 41 160-200 192-234 (282)
387 PRK14956 DNA polymerase III su 91.6 0.8 1.7E-05 50.4 9.1 110 163-283 41-151 (484)
388 PRK13341 recombination factor 91.6 0.42 9.1E-06 55.3 7.3 30 160-190 50-79 (725)
389 PRK14246 phosphate ABC transpo 91.6 0.11 2.5E-06 52.0 2.5 29 157-186 31-59 (257)
390 PRK05986 cob(I)alamin adenolsy 91.6 1.4 3.1E-05 42.8 9.8 138 161-304 21-169 (191)
391 PRK11650 ugpC glycerol-3-phosp 91.6 0.11 2.4E-06 54.9 2.4 31 155-186 23-53 (356)
392 cd03234 ABCG_White The White s 91.6 0.12 2.5E-06 50.6 2.4 30 156-186 27-56 (226)
393 KOG2028|consensus 91.6 0.43 9.3E-06 50.7 6.6 104 164-304 164-276 (554)
394 cd03299 ABC_ModC_like Archeal 91.6 0.17 3.8E-06 49.8 3.7 29 157-186 20-48 (235)
395 PRK13647 cbiO cobalt transport 91.6 0.11 2.5E-06 52.5 2.4 29 157-186 26-54 (274)
396 PRK14254 phosphate ABC transpo 91.5 0.12 2.6E-06 52.8 2.5 29 157-186 60-88 (285)
397 COG4608 AppF ABC-type oligopep 91.5 0.12 2.5E-06 52.6 2.4 36 150-186 26-62 (268)
398 COG3839 MalK ABC-type sugar tr 91.5 0.12 2.6E-06 54.3 2.6 29 156-185 23-51 (338)
399 cd03221 ABCF_EF-3 ABCF_EF-3 E 91.5 0.19 4E-06 46.0 3.5 30 157-187 21-50 (144)
400 PRK14275 phosphate ABC transpo 91.5 0.12 2.6E-06 52.8 2.4 31 155-186 58-88 (286)
401 PRK14263 phosphate ABC transpo 91.5 0.12 2.7E-06 51.9 2.5 30 156-186 28-57 (261)
402 PRK09580 sufC cysteine desulfu 91.5 0.11 2.5E-06 51.2 2.2 29 157-186 22-50 (248)
403 PRK13640 cbiO cobalt transport 91.4 0.12 2.6E-06 52.6 2.4 29 157-186 28-56 (282)
404 PRK14236 phosphate transporter 91.4 0.12 2.7E-06 52.1 2.5 29 157-186 46-74 (272)
405 PRK13651 cobalt transporter AT 91.4 0.12 2.5E-06 53.5 2.3 34 152-186 22-56 (305)
406 PRK13648 cbiO cobalt transport 91.4 0.18 4E-06 50.7 3.7 32 154-186 27-58 (269)
407 TIGR03873 F420-0_ABC_ATP propo 91.4 0.12 2.6E-06 51.6 2.3 29 157-186 22-50 (256)
408 PRK13652 cbiO cobalt transport 91.4 0.13 2.7E-06 52.3 2.4 29 157-186 25-53 (277)
409 COG4172 ABC-type uncharacteriz 91.3 0.21 4.6E-06 53.6 4.1 36 150-186 300-336 (534)
410 PRK13635 cbiO cobalt transport 91.3 0.13 2.7E-06 52.4 2.4 29 157-186 28-56 (279)
411 PRK14252 phosphate ABC transpo 91.3 0.13 2.8E-06 51.7 2.5 32 154-186 34-65 (265)
412 TIGR03265 PhnT2 putative 2-ami 91.3 0.12 2.7E-06 54.5 2.4 32 155-187 23-54 (353)
413 cd03291 ABCC_CFTR1 The CFTR su 91.3 0.13 2.8E-06 52.7 2.5 32 154-186 55-86 (282)
414 PRK09473 oppD oligopeptide tra 91.3 0.12 2.5E-06 54.2 2.2 36 150-186 29-65 (330)
415 PF02283 CobU: Cobinamide kina 91.3 0.65 1.4E-05 44.0 7.0 87 165-270 1-88 (167)
416 KOG0651|consensus 91.3 0.39 8.5E-06 49.9 5.9 48 165-213 169-222 (388)
417 PRK08760 replicative DNA helic 91.3 0.26 5.6E-06 54.2 5.0 61 145-205 211-273 (476)
418 PRK13646 cbiO cobalt transport 91.3 0.13 2.7E-06 52.6 2.4 29 157-186 28-56 (286)
419 PRK11308 dppF dipeptide transp 91.3 0.13 2.8E-06 53.8 2.5 35 151-186 29-64 (327)
420 PRK14964 DNA polymerase III su 91.3 0.63 1.4E-05 51.4 7.9 21 163-184 36-56 (491)
421 PF05673 DUF815: Protein of un 91.3 0.53 1.1E-05 47.5 6.7 35 161-196 51-86 (249)
422 PRK07004 replicative DNA helic 91.3 0.32 7E-06 53.2 5.7 42 145-186 195-237 (460)
423 PRK14259 phosphate ABC transpo 91.2 0.13 2.9E-06 51.8 2.5 29 157-186 34-62 (269)
424 COG0411 LivG ABC-type branched 91.2 0.06 1.3E-06 53.9 -0.1 38 148-186 15-53 (250)
425 TIGR02314 ABC_MetN D-methionin 91.2 0.13 2.8E-06 54.2 2.4 34 152-186 20-54 (343)
426 PRK11144 modC molybdate transp 91.2 0.13 2.9E-06 54.1 2.5 33 153-186 15-47 (352)
427 PRK03695 vitamin B12-transport 91.2 0.12 2.7E-06 51.4 2.1 30 156-186 16-45 (248)
428 cd03288 ABCC_SUR2 The SUR doma 91.1 0.14 3E-06 51.2 2.5 29 157-186 42-70 (257)
429 PRK09452 potA putrescine/sperm 91.1 0.13 2.8E-06 54.8 2.4 31 155-186 33-63 (375)
430 PRK03992 proteasome-activating 91.1 0.43 9.4E-06 51.0 6.3 27 164-191 167-193 (389)
431 PRK13642 cbiO cobalt transport 91.1 0.14 3E-06 51.9 2.4 34 152-186 22-56 (277)
432 PRK13650 cbiO cobalt transport 91.0 0.14 3E-06 52.1 2.3 32 154-186 25-56 (279)
433 PRK13637 cbiO cobalt transport 91.0 0.14 3E-06 52.4 2.3 34 152-186 22-56 (287)
434 KOG0743|consensus 91.0 0.35 7.5E-06 52.4 5.4 59 165-230 238-297 (457)
435 PRK13631 cbiO cobalt transport 90.9 0.14 3.1E-06 53.2 2.5 34 152-186 41-75 (320)
436 PRK15079 oligopeptide ABC tran 90.9 0.14 3E-06 53.6 2.4 35 151-186 35-70 (331)
437 PRK12339 2-phosphoglycerate ki 90.9 1.1 2.4E-05 43.5 8.4 24 163-187 4-27 (197)
438 PRK05541 adenylylsulfate kinas 90.9 1.1 2.4E-05 41.9 8.2 28 158-186 3-30 (176)
439 PRK14257 phosphate ABC transpo 90.9 0.14 3.1E-06 53.5 2.3 30 157-187 103-132 (329)
440 cd03282 ABC_MSH4_euk MutS4 hom 90.9 1.6 3.5E-05 42.5 9.6 32 152-184 19-50 (204)
441 PRK14258 phosphate ABC transpo 90.8 0.16 3.4E-06 51.0 2.5 29 157-186 28-56 (261)
442 COG4525 TauB ABC-type taurine 90.8 0.18 3.9E-06 49.4 2.7 31 154-185 23-53 (259)
443 PRK13644 cbiO cobalt transport 90.8 0.15 3.3E-06 51.6 2.3 30 156-186 22-51 (274)
444 TIGR03522 GldA_ABC_ATP gliding 90.7 0.14 3.1E-06 52.5 2.2 29 157-186 23-51 (301)
445 COG1120 FepC ABC-type cobalami 90.7 0.16 3.4E-06 51.6 2.4 29 157-186 23-51 (258)
446 COG1484 DnaC DNA replication p 90.7 0.26 5.6E-06 49.8 4.0 46 161-214 104-150 (254)
447 PRK14962 DNA polymerase III su 90.7 1.5 3.2E-05 48.4 10.1 21 165-186 39-59 (472)
448 PRK13536 nodulation factor exp 90.7 0.16 3.4E-06 53.4 2.5 35 151-186 55-90 (340)
449 PRK13634 cbiO cobalt transport 90.7 0.16 3.4E-06 52.0 2.4 29 157-186 28-56 (290)
450 PRK13633 cobalt transporter AT 90.7 0.22 4.9E-06 50.5 3.5 29 157-186 31-59 (280)
451 PHA02544 44 clamp loader, smal 90.6 0.97 2.1E-05 46.3 8.2 27 164-191 44-71 (316)
452 COG1127 Ttg2A ABC-type transpo 90.6 0.19 4E-06 50.5 2.7 32 157-189 29-60 (263)
453 TIGR00708 cobA cob(I)alamin ad 90.6 1.6 3.4E-05 41.8 8.9 135 164-304 7-151 (173)
454 TIGR02142 modC_ABC molybdenum 90.5 0.17 3.6E-06 53.4 2.5 32 154-186 15-46 (354)
455 cd00046 DEXDc DEAD-like helica 90.5 1 2.2E-05 38.4 7.1 23 164-186 2-24 (144)
456 COG4181 Predicted ABC-type tra 90.5 0.19 4E-06 48.4 2.5 27 157-184 31-57 (228)
457 COG4167 SapF ABC-type antimicr 90.5 0.18 3.9E-06 48.9 2.4 28 157-185 34-61 (267)
458 cd03297 ABC_ModC_molybdenum_tr 90.4 0.18 3.8E-06 48.9 2.4 31 154-186 16-46 (214)
459 PRK07773 replicative DNA helic 90.4 0.42 9.1E-06 56.5 6.0 63 144-206 198-262 (886)
460 PRK11000 maltose/maltodextrin 90.4 0.16 3.6E-06 53.9 2.4 30 156-186 23-52 (369)
461 TIGR03238 dnd_assoc_3 dnd syst 90.4 0.12 2.5E-06 56.8 1.2 39 141-179 9-49 (504)
462 COG0563 Adk Adenylate kinase a 90.4 0.2 4.2E-06 48.0 2.6 22 164-186 2-23 (178)
463 PRK11022 dppD dipeptide transp 90.3 0.17 3.7E-06 52.8 2.3 36 150-186 20-56 (326)
464 TIGR02868 CydC thiol reductant 90.3 0.19 4E-06 55.6 2.7 30 156-186 355-384 (529)
465 cd03289 ABCC_CFTR2 The CFTR su 90.2 0.19 4.1E-06 51.3 2.5 30 157-187 25-54 (275)
466 PRK11607 potG putrescine trans 90.2 0.18 3.9E-06 53.8 2.4 32 155-187 38-69 (377)
467 PRK07994 DNA polymerase III su 90.1 0.88 1.9E-05 51.9 8.0 108 165-283 41-149 (647)
468 PRK14961 DNA polymerase III su 90.1 1.1 2.4E-05 47.3 8.4 21 165-186 41-61 (363)
469 PRK04841 transcriptional regul 90.1 0.95 2.1E-05 52.9 8.5 49 160-212 30-78 (903)
470 PRK10636 putative ABC transpor 90.1 0.18 4E-06 57.3 2.5 31 155-186 20-50 (638)
471 cd01130 VirB11-like_ATPase Typ 90.1 0.3 6.4E-06 46.5 3.6 31 159-190 22-52 (186)
472 PRK13636 cbiO cobalt transport 90.0 0.2 4.3E-06 51.0 2.4 30 156-186 26-55 (283)
473 cd04160 Arfrp1 Arfrp1 subfamil 90.0 3.2 7E-05 37.6 10.3 22 164-186 1-22 (167)
474 PHA00729 NTP-binding motif con 89.9 0.14 3E-06 51.0 1.2 33 151-185 7-39 (226)
475 COG4987 CydC ABC-type transpor 89.9 0.25 5.4E-06 54.6 3.2 35 151-186 352-387 (573)
476 PLN03073 ABC transporter F fam 89.8 0.19 4E-06 58.1 2.3 31 154-185 195-225 (718)
477 KOG0727|consensus 89.8 0.5 1.1E-05 47.9 5.0 34 161-195 188-221 (408)
478 PRK13537 nodulation ABC transp 89.7 0.32 6.9E-06 50.3 3.8 30 157-187 28-57 (306)
479 TIGR03258 PhnT 2-aminoethylpho 89.7 0.21 4.5E-06 53.0 2.5 30 156-186 25-54 (362)
480 TIGR02640 gas_vesic_GvpN gas v 89.7 0.4 8.7E-06 48.4 4.4 32 159-191 18-49 (262)
481 cd02027 APSK Adenosine 5'-phos 89.7 1.5 3.4E-05 40.2 7.9 20 165-185 2-21 (149)
482 PRK10078 ribose 1,5-bisphospho 89.7 0.28 6.2E-06 46.6 3.1 26 162-188 2-27 (186)
483 PRK00149 dnaA chromosomal repl 89.7 0.59 1.3E-05 50.9 5.9 36 163-199 149-187 (450)
484 PF13604 AAA_30: AAA domain; P 89.6 0.25 5.3E-06 47.7 2.6 23 162-185 17-40 (196)
485 PRK11147 ABC transporter ATPas 89.5 0.2 4.4E-06 56.9 2.4 31 155-186 22-52 (635)
486 PF07728 AAA_5: AAA domain (dy 89.5 0.31 6.7E-06 43.6 3.1 33 165-200 2-34 (139)
487 PRK09536 btuD corrinoid ABC tr 89.5 0.21 4.5E-06 53.8 2.3 29 157-186 24-52 (402)
488 PRK11819 putative ABC transpor 89.4 0.23 5E-06 55.5 2.6 34 152-186 22-56 (556)
489 PRK14531 adenylate kinase; Pro 89.4 0.32 7E-06 46.1 3.3 33 163-200 3-35 (183)
490 COG0488 Uup ATPase components 89.4 0.26 5.6E-06 55.0 3.0 36 154-190 340-375 (530)
491 PRK06645 DNA polymerase III su 89.4 1.3 2.8E-05 49.2 8.4 22 163-185 44-65 (507)
492 cd00881 GTP_translation_factor 89.4 3.6 7.9E-05 37.7 10.3 23 164-187 1-23 (189)
493 PRK06620 hypothetical protein; 89.4 0.91 2E-05 44.6 6.5 24 163-187 45-68 (214)
494 TIGR03269 met_CoM_red_A2 methy 89.4 0.22 4.9E-06 54.9 2.5 31 155-186 19-49 (520)
495 PRK15064 ABC transporter ATP-b 89.4 0.23 5.1E-06 55.0 2.6 34 152-186 16-50 (530)
496 KOG0060|consensus 89.4 0.27 5.8E-06 54.7 3.0 47 137-185 436-483 (659)
497 TIGR01186 proV glycine betaine 89.3 0.22 4.8E-06 52.9 2.2 29 157-186 14-42 (363)
498 cd01878 HflX HflX subfamily. 89.2 2.7 5.8E-05 39.9 9.5 22 164-186 43-64 (204)
499 PRK14949 DNA polymerase III su 89.2 1.3 2.8E-05 52.2 8.5 33 251-283 116-149 (944)
500 COG4136 ABC-type uncharacteriz 89.2 0.35 7.5E-06 45.6 3.1 34 156-190 22-55 (213)
No 1
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=4.6e-150 Score=1156.10 Aligned_cols=502 Identities=63% Similarity=1.021 Sum_probs=497.2
Q ss_pred CCCChHHHHHHHHHHHHcccCccCccceeEEEEEECcEEEEEecCCCcccCEEEEcCCceEEEEEEeCCeEEEEEeCCCC
Q psy2894 1 MKINASEISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVFGLALNLERDSIGAVILGKYE 80 (515)
Q Consensus 1 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~~~~~g~V~~l~~~~v~~~~~~~~~ 80 (515)
|.++++|+++.|++++++|+......+.|+|++|.|++++|+||.+++.||+++|+++++|+++++++|.|+++++|+..
T Consensus 1 ~~~~~~ei~~~i~~~i~~~~~~~~~~~~g~V~sv~DgIa~v~Gl~~~~~~E~~ef~~~v~G~alnle~d~VG~vi~g~~~ 80 (504)
T COG0056 1 MQLNPTEISSLIKQQIENFDVEAEVKEVGTVISVGDGIARVSGLENVMAGELVEFPGGVKGMALNLEEDSVGAVILGDYS 80 (504)
T ss_pred CCCcHHHHHHHHHHHHHhcchhhhhhccceEEEEecceEEEecCchhhcCceEEecCCcEEEEEeccccceeEEEecCCc
Confidence 78999999999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcCCccccccCccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCcccccccccccccccccc
Q psy2894 81 HITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIG 160 (515)
Q Consensus 81 gi~~G~~V~~tg~~~~vpvg~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pig 160 (515)
.|++||+|++||+.++||||++|+|||+|++|+|+||++++....+.|++..+|++++|++++|||+|||++||+|+|||
T Consensus 81 ~i~eG~~v~~Tg~i~~Vpvg~~llGRVVn~lG~pidgkg~i~~~~~~~~e~~Apgv~~RksV~ePlqTGikaIDamiPIG 160 (504)
T COG0056 81 DIKEGDEVKRTGRILEVPVGEELLGRVVDALGNPIDGKGPIDATKTRPVEKKAPGVMDRKSVNEPLQTGIKAIDALIPIG 160 (504)
T ss_pred cccCCcEEEeeCceEEEecchhhcceeecCCCCccCCCCCccccccCccccccCceecccccCchhhhhhHHHhhhcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHh
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAY 240 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~ 240 (515)
||||++|+||+|||||++|+|+|+||++.|++||||+|||+.++|++++++|+++|+|+||+||+|++++|+.+||+|||
T Consensus 161 RGQRELIIGDRQTGKTaIAidtIiNQk~~~v~CIYVAIGQK~stva~vv~tL~e~gAmdyTiVV~AsASd~a~lqYLaPy 240 (504)
T COG0056 161 RGQRELIIGDRQTGKTAIAIDTIINQKGSGVKCIYVAIGQKRSTVANVVRTLEEHGAMDYTIVVAASASDSAPLQYLAPY 240 (504)
T ss_pred CCceEEEeccCcCCcchhhHHHHHhcccCCcEEEEEEcccchHHHHHHHHHHHHcCCccceEEEEecCCcchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCC
Q psy2894 241 SGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGK 320 (515)
Q Consensus 241 ~a~~iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~ 320 (515)
+|||||||||++|+|||+||||||+||.|||||||+++||||||+|||||||+||||||||+|++++ .|
T Consensus 241 ~g~a~aE~f~~~G~dvLIVyDDLsKhA~AYReiSLLlrRPPGREAyPGDVFYlHSrLLERAakl~~e----------~g- 309 (504)
T COG0056 241 AGCAMAEYFRDNGKDVLIVYDDLSKHAVAYREISLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDE----------LG- 309 (504)
T ss_pred hhhHHHHHHHhcCCeEEEEecCchHHHHHHHHHHHHhcCCCCccCCCCceeehhHHHHHHHHhhccc----------cC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999987 77
Q ss_pred CCceeeeeEEeecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHHHhh
Q psy2894 321 TGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQY 400 (515)
Q Consensus 321 ~GSiT~l~~v~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~la~y 400 (515)
|||||++|+++|++||+|+|||||++|||||||||+.+||++|++||||++.||||+|+++|.+.++++|+.+|+.|+||
T Consensus 310 ~GSiTALPIIETqagDvSAyIpTNVISITDGQIfl~t~LFn~G~rPAInvGlSVSRvGssAQ~kamkkvag~lrl~laqY 389 (504)
T COG0056 310 GGSITALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNAGIRPAINVGLSVSRVGSAAQIKAMKKVAGSLRLILAQY 389 (504)
T ss_pred CCceEeeeeEEeccCceeeecccceEEecCCcEEeehhhhhcCCCccccCCceeeccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCHHHHHHHHhhHHHhhcccccccCCCCHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHHhhch
Q psy2894 401 RELAAFSQFSSDLDLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFMKTCQN 480 (515)
Q Consensus 401 ~el~~~~~~g~~ld~~~~~~l~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~~~G~ld~v~~~~v~~f~~~l~~~l~~~~~ 480 (515)
+|++.|++||++||+++++.+++|+++.++|+|++|+|+|+++|+..+|++.|||||++|++++.+|+..++.+++..++
T Consensus 390 rel~afsqf~sdLd~~T~~~l~~G~r~~ellkQ~~~~p~sv~~qv~ilya~~~G~ld~v~v~~v~~fe~~l~~~~~~~~~ 469 (504)
T COG0056 390 RELEAFSQFGSDLDKATRKQLERGKRLTELLKQPQYSPLSVEEQVLILYAGTNGYLDDVPVEKVADFEKELLAYLRSDHK 469 (504)
T ss_pred HHHHHHHhhcchhCHHHHHHHHccHHHHHHhcCCCCCCccHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHhhhhh
Q psy2894 481 SILEKIKNVNEFNADIEDSLTTILINFKKSYDA 513 (515)
Q Consensus 481 ei~~~i~~~~~l~~e~~~~l~~~~~~f~~~f~~ 513 (515)
++++.|.++++|+++++++|+.++++|+++|..
T Consensus 470 ~~~~~I~~~~~l~~~~e~~l~~~i~~f~~~f~~ 502 (504)
T COG0056 470 ELLEEIRTTKELDDEIEAKLKAAIKEFKKTFAL 502 (504)
T ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999965
No 2
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=100.00 E-value=1.1e-138 Score=1112.58 Aligned_cols=502 Identities=51% Similarity=0.841 Sum_probs=492.2
Q ss_pred CCCChHHHHHHHHHHHHcccCccCccceeEEEEEECcEEEEEecCCCcccCEEEEcCCceEEEEEEeCCeEEEEEeCCCC
Q psy2894 1 MKINASEISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVFGLALNLERDSIGAVILGKYE 80 (515)
Q Consensus 1 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~~~~~g~V~~l~~~~v~~~~~~~~~ 80 (515)
|+++++++.+.+++++++|+.....+.+|+|++|.|++++|+|++++++||+|+|.++..|+|++++++.+.+++|+++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~V~~v~g~i~~v~gl~~~~~ge~~~i~~~~~g~V~~l~~~~v~~~~l~~~~ 80 (502)
T PRK13343 1 MKSNADEWLARIRQRIARYEPQPDAREIGRVESVGDGIAFVSGLPDAALDELLRFEGGSRGFAFNLEEELVGAVLLDDTA 80 (502)
T ss_pred CCCCHHHHHHHHHHHHhcCCCcceeEEeeEEEEEeCCEEEEeCCCCCCCCCEEEECCCcEEEEEEecCCeEEEEEeeCCC
Confidence 57899999999999999999888889999999999999999999999999999998789999999999999999999999
Q ss_pred CCCCCCEEEEcCCccccccCccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCcccccccccccccccccc
Q psy2894 81 HITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIG 160 (515)
Q Consensus 81 gi~~G~~V~~tg~~~~vpvg~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pig 160 (515)
+|++|+.|++||++++||||++|||||+|++|+|||+++++...+++|++..+|++++|+++++||+||||+||+|+|||
T Consensus 81 gi~~G~~V~~tg~~~~vpvg~~llGRVid~lG~piDg~~~i~~~~~~~i~~~ap~~~~R~~v~epl~TGIkaID~l~pig 160 (502)
T PRK13343 81 DILAGTEVRRTGRVLEVPVGDGLLGRVIDPLGRPLDGGGPLQATARRPLERPAPAIIERDFVTEPLQTGIKVVDALIPIG 160 (502)
T ss_pred CCCCCCEeEecCCcceeecCHHhcCCEECCCCCcccCCCCCCCCceecccCCCcChhhcCCCCcccccCCceeccccccc
Confidence 99999999999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHh
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAY 240 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~ 240 (515)
||||++|||++|+|||+||++||+||+++|++|||++||||++||++|++++.++++|+||+||++|+|+||++||+|||
T Consensus 161 rGQR~~I~g~~g~GKt~Lal~~i~~~~~~dv~~V~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atsd~~~~~r~~ap~ 240 (502)
T PRK13343 161 RGQRELIIGDRQTGKTAIAIDAIINQKDSDVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQYLAPF 240 (502)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHhhcCCCEEEEEEEeccChHHHHHHHHHHHhcCccceeEEEEecccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCC
Q psy2894 241 SGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGK 320 (515)
Q Consensus 241 ~a~~iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~ 320 (515)
+|||+||||||+|+|||++||||||||+|||||||++||||+++|||||+||+||||+||||+++.+ .|
T Consensus 241 ~a~aiAEyfrd~G~~VLlv~DdlTr~A~A~REisL~l~epPgr~gYP~~vf~~~srLlERAg~~~~~----------~~- 309 (502)
T PRK13343 241 AGCAIAEYFRDQGQDALIVYDDLSKHAAAYRELSLLLRRPPGREAYPGDIFYLHSRLLERAAKLSPE----------LG- 309 (502)
T ss_pred HHHHHHHHHHhCCCCEEEEecchHHHHHHHHHHHHhcCCCCCcCCcCcchHhhhHHHHHhhccCCCC----------CC-
Confidence 9999999999999999999999999999999999999999999999999999999999999998653 45
Q ss_pred CCceeeeeEEeecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHHHhh
Q psy2894 321 TGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQY 400 (515)
Q Consensus 321 ~GSiT~l~~v~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~la~y 400 (515)
+||||+||+|+|++||++||||||++|||||||||||+||++||||||||+.|+||+|+++|.++|+++|+++|++|++|
T Consensus 310 gGSITal~~V~~~~dD~s~pI~~~v~sItDGqIvLsr~La~~G~~PAIDv~~SvSRv~~~~~~~~~~~~a~~lr~~la~y 389 (502)
T PRK13343 310 GGSLTALPIIETLAGELSAYIPTNLISITDGQIYLDSDLFAAGQRPAVDVGLSVSRVGGKAQHPAIRKESGRLRLDYAQF 389 (502)
T ss_pred CcceEEEEEEEcCCCCCCCcchhhhhcccceEEEECHHHHhCCCCCccCCccchhccCccccCHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCHHHHHHHHhhHHHhhcccccccCCCCHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHHhhch
Q psy2894 401 RELAAFSQFSSDLDLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFMKTCQN 480 (515)
Q Consensus 401 ~el~~~~~~g~~ld~~~~~~l~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~~~G~ld~v~~~~v~~f~~~l~~~l~~~~~ 480 (515)
+|+++|++||+.+|++++++++++++|++||+|++++++++++|+..|+++.||+||++|++++++|++.+++|++.+++
T Consensus 390 ~e~e~~~~~G~~ld~~~~~~i~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~ 469 (502)
T PRK13343 390 LELEAFTRFGGLLDAGTQKQITRGRRLRELLKQPRFSPLSVEEQIALLYALNEGLLDAVPLANIQAFEERLLEKLDARFA 469 (502)
T ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHhhhhh
Q psy2894 481 SILEKIKNVNEFNADIEDSLTTILINFKKSYDA 513 (515)
Q Consensus 481 ei~~~i~~~~~l~~e~~~~l~~~~~~f~~~f~~ 513 (515)
++++.|++++.|+++.++.|++++++|.+.|.+
T Consensus 470 ~~~~~i~~~~~l~~~~~~~l~~~~~~~~~~~~~ 502 (502)
T PRK13343 470 ALSLALESPRELDEAWLAALEEILREAGERFAA 502 (502)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999998863
No 3
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=100.00 E-value=8.6e-138 Score=1101.92 Aligned_cols=493 Identities=45% Similarity=0.795 Sum_probs=481.7
Q ss_pred ChHHHHHHHHHHHHcccCccCccceeEEEEEECcEEEEEecCCCcccCEEEEcCCceEEEEEEeCCeEEEEEeCCCCCCC
Q psy2894 4 NASEISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVFGLALNLERDSIGAVILGKYEHIT 83 (515)
Q Consensus 4 ~~~~~~~~l~~~i~~~~~~~~~~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~~~~~g~V~~l~~~~v~~~~~~~~~gi~ 83 (515)
-+++|++.+++++++|+.....+.+|+|++|.|++++++|++++++||+|+|.++..|+|++++++.+.+++|+++.||+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~G~V~~v~g~ii~v~gl~~~~~gEl~~i~~~~~g~Vi~l~~~~v~~~~l~~~~gi~ 83 (497)
T TIGR03324 4 VLDKAFQQLDQARESFQPQLTVQEVGTVESVSTGIARVHGLPGVGFEELLRFPGGLLGIAFNVDEDEVGVVLLGEYSHLQ 83 (497)
T ss_pred CHHHHHHHHHHHHHhcCCCcceeEEEEEEEEeceEEEEEccCCCCcCCEEEECCCcEEEEEEEcCCeEEEEEecCCcCCc
Confidence 46899999999999999988899999999999999999999999999999998779999999999999999999999999
Q ss_pred CCCEEEEcCCccccccCccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCc
Q psy2894 84 EGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQ 163 (515)
Q Consensus 84 ~G~~V~~tg~~~~vpvg~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGq 163 (515)
.|++|.+||++++||||++|||||+|++|+|||+++++...+++|++.++|++++|.++++||+||||+||+|+||||||
T Consensus 84 ~G~~V~~tg~~~~vpvg~~llGRVvd~lG~PiDg~~~~~~~~~~~i~~~~p~~~~R~~v~epl~TGI~aID~l~pigrGQ 163 (497)
T TIGR03324 84 AGDEVERTGRVMDVPVGDGLLGRVVDPLGRPLDGGGPLASSPRLPIERPAPPIMDRAPVTVPLQTGLKVIDALIPIGRGQ 163 (497)
T ss_pred CCCEEEECCCCCeEECCHhhCcCEECCCCCCcCCCCCCCCCceeehhccCcCccccCCCCchhhcCCEEEeccCCcccCC
Confidence 99999999999999999999999999999999999998877889999999999999999999999999999999999999
Q ss_pred ceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGC 243 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~ 243 (515)
|+||||++|||||+|+++||+||+++|++|||++||||++||++|++++.++|+|+||++|++|+|+||++|++|||+||
T Consensus 164 R~~Ifg~~g~GKT~Lal~~I~~q~~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~ap~~a~ 243 (497)
T TIGR03324 164 RELILGDRQTGKTAIAIDTILNQKGRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIAPYAAT 243 (497)
T ss_pred EEEeecCCCCCHHHHHHHHHHHhcCCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCc
Q psy2894 244 TIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGS 323 (515)
Q Consensus 244 ~iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GS 323 (515)
||||||||+|+|||++||||||||+||||||+++||||+++|||||+||+||||+||||+++.. .+ +||
T Consensus 244 aiAEyfrd~G~~VLlv~DdlTr~A~A~REisL~lgepPgr~gYPg~vF~~~srLlERag~~~~~----------~~-~GS 312 (497)
T TIGR03324 244 SIGEHFMEQGRDVLIVYDDLTQHARAYRELSLLLRRPPGREAFPGDIFYVHSRLLERSTHLNEE----------LG-GGS 312 (497)
T ss_pred HHHHHHHhCCCCEEEEEcChhHHHHHHHHHHhhccCCCccCcCCccHHHHhHHHHHhhhhccCC----------CC-Ccc
Confidence 9999999999999999999999999999999999999999999999999999999999998542 35 899
Q ss_pred eeeeeEEeecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHHHhhHHH
Q psy2894 324 LTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYREL 403 (515)
Q Consensus 324 iT~l~~v~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~la~y~el 403 (515)
||+||+|+|++||++||||||++|||||||||||+||++||||||||+.|+||+|+++|.++|+++|+++|+.|++|+|+
T Consensus 313 ITal~~V~~~~dD~s~pI~d~v~sItDGqIvLsr~La~~G~~PAIDv~~SvSRv~~~~~~~~~~~~a~~lr~~la~y~e~ 392 (497)
T TIGR03324 313 LTALPIIETEAQNISAYIPTNLISITDGQIYLSPTLFELGVLPAVDVGKSVSRVGGKAQLAAYRAVAGDLKLAYAQFEEL 392 (497)
T ss_pred eeEEEEEEcCCCCCCCcchHhheeccceEEEEcHHHHhCCCCCcCCCccccccCCccccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCHHHHHHHHhhHHHhhcccccccCCCCHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHHhhchHHH
Q psy2894 404 AAFSQFSSDLDLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFMKTCQNSIL 483 (515)
Q Consensus 404 ~~~~~~g~~ld~~~~~~l~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~~~G~ld~v~~~~v~~f~~~l~~~l~~~~~ei~ 483 (515)
++|++||+++|++++++++++++|++||+|++++++++++|+..|+++.||+||++|++++++|+..+++|++..++++.
T Consensus 393 e~~~~~G~~ld~~~~~~i~~~~~i~~fL~Q~~~~~~~~~~~~~~l~~~~~g~~d~~~~~~v~~~~~~~~~~~~~~~~~~~ 472 (497)
T TIGR03324 393 ETFARFGARLDENTRKTIEHGRRIRACLKQTQSSPLTVPQQIAILLALTNGLFDGVDLDAMPEAESAIRAAVTSLPADLR 472 (497)
T ss_pred HHHHHhhhhcCHHHHHHHHhHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHH
Q psy2894 484 EKIKNVNEFNADIEDSLTTILINF 507 (515)
Q Consensus 484 ~~i~~~~~l~~e~~~~l~~~~~~f 507 (515)
+.|++++++++++++.|++++++.
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~ 496 (497)
T TIGR03324 473 ERLQSGKKLSDEDREQILDIARGA 496 (497)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999988764
No 4
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=100.00 E-value=1.4e-136 Score=1088.36 Aligned_cols=479 Identities=53% Similarity=0.876 Sum_probs=469.0
Q ss_pred ccceeEEEEEECcEEEEEecCCCcccCEEEEcCCceEEEEEEeCCeEEEEEeCCCCCCCCCCEEEEcCCccccccCcccc
Q psy2894 25 IYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVFGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELC 104 (515)
Q Consensus 25 ~~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~~~~~g~V~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvg~~lL 104 (515)
...+|+|++|.|++++|+|++++++||+|.|.++..|+|++++++.+.+++|+++.+|++|++|++||+.++||||++||
T Consensus 4 ~~~~G~V~~v~~~ii~v~Gl~~~~~ge~~~i~~~~~g~vi~~~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~ll 83 (485)
T CHL00059 4 IVNTGTVLQVGDGIARIYGLDEVMAGELVEFEDGTIGIALNLESNNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAYL 83 (485)
T ss_pred eeeeEEEEEEeccEEEEeccccCCcCCEEEECCCCEEEEEEEcCCEEEEEEeeCCCCCCCCCEEEECCCcceEEcCHhhc
Confidence 46789999999999999999899999999998889999999999999999999999999999999999999999999999
Q ss_pred ceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCccHHHHHHHH
Q psy2894 105 GRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIII 184 (515)
Q Consensus 105 GrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GKt~l~~~~i~ 184 (515)
|||+|++|+|||+++++...+++|++.++|++++|+++++||+||||+||+|+|||||||+||||++|+|||+||++||+
T Consensus 84 GRVvd~lG~piDg~~~~~~~~~~~i~~~ap~~~~R~~v~epl~TGI~aID~l~pigrGQR~~I~g~~g~GKt~Lal~~I~ 163 (485)
T CHL00059 84 GRVVNALAKPIDGKGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTIL 163 (485)
T ss_pred CCEECCCCCeeCCCCCcCCCccccccCCCCCchhccCCCcccccCceeeccccccccCCEEEeecCCCCCHHHHHHHHHH
Confidence 99999999999999988777788999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechh
Q psy2894 185 NQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLS 264 (515)
Q Consensus 185 ~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dslt 264 (515)
||+++|++|||++||||++||++|+++++++|+|+||++|++|+|+||.+||+|||+||||||||||+|+|||++|||||
T Consensus 164 ~q~~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ap~~a~aiAEyfr~~G~~VLlv~DdlT 243 (485)
T CHL00059 164 NQKGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRGRHTLIIYDDLS 243 (485)
T ss_pred hcccCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHHHHHHHhhHHHHHHHcCCCEEEEEcChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEeecCCCCCCccccc
Q psy2894 265 KQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTN 344 (515)
Q Consensus 265 r~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~~~~D~s~pI~~~ 344 (515)
|||+||||||+++||||+++|||||+||+||||+||||+++.+ .| +||||+||+|+|++||+++|||||
T Consensus 244 r~A~A~REisl~l~epPgr~gYP~~vF~~~srLlERag~~~~~----------~~-~GSITal~~V~~~~dD~s~pI~~~ 312 (485)
T CHL00059 244 KQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQ----------LG-EGSMTALPIVETQAGDVSAYIPTN 312 (485)
T ss_pred HHHHHHHHHHHhcCCCCCcCCcCchHHHHhHHHHHhhhcccCC----------CC-CcceEEEEEEEccCCCCCCcchHh
Confidence 9999999999999999999999999999999999999998653 45 899999999999999999999999
Q ss_pred ccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCHHHHHHHHhh
Q psy2894 345 VISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSSDLDLVTRKQLDRG 424 (515)
Q Consensus 345 ~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~la~y~el~~~~~~g~~ld~~~~~~l~~~ 424 (515)
++|||||||||||+||++||||||||+.|+||+|+++|.++|+++|+++|++|++|+|+++|++|++++|++++.+++++
T Consensus 313 v~sItDGqIvLsr~La~~G~~PAIDv~~SvSRvg~~aq~~~~~~~a~~lr~~la~y~e~e~~~~~~~~~d~~~~~~i~~~ 392 (485)
T CHL00059 313 VISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARG 392 (485)
T ss_pred hhhhcceEEEEcHHHHhCCCCCCcCcccchhcCCchhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccccCCCCHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHHhhchHHHHHHHhccCCCHHHHHHHHHHH
Q psy2894 425 ARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFMKTCQNSILEKIKNVNEFNADIEDSLTTIL 504 (515)
Q Consensus 425 ~~i~~~L~Q~~~~~~~~~~~~~~l~~~~~G~ld~v~~~~v~~f~~~l~~~l~~~~~ei~~~i~~~~~l~~e~~~~l~~~~ 504 (515)
++|++||+|++++++++++|+..+|++.||+||+++++++++|++.+++|++..++++++.|++++.|+++.++.|++++
T Consensus 393 ~~i~~~L~Q~~~~~~~~~e~~~~l~a~~~g~l~~~~~~~v~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~ 472 (485)
T CHL00059 393 QRLRELLKQSQSAPLTVEEQVATIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEALLKEAI 472 (485)
T ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHhccCCcCccCHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhc
Q psy2894 505 INFKKSYDAK 514 (515)
Q Consensus 505 ~~f~~~f~~~ 514 (515)
++|.+.|.++
T Consensus 473 ~~~~~~~~~~ 482 (485)
T CHL00059 473 QEQLELFLLQ 482 (485)
T ss_pred HHHHHHHHHh
Confidence 9999998643
No 5
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=100.00 E-value=5.6e-136 Score=1096.55 Aligned_cols=500 Identities=63% Similarity=1.028 Sum_probs=488.8
Q ss_pred CChHHHHHHHHHHHHcccCccCccceeEEEEEECcEEEEEecCCCcccCEEEEcCCceEEEEEEeCCeEEEEEeCCCCCC
Q psy2894 3 INASEISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVFGLALNLERDSIGAVILGKYEHI 82 (515)
Q Consensus 3 ~~~~~~~~~l~~~i~~~~~~~~~~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~~~~~g~V~~l~~~~v~~~~~~~~~gi 82 (515)
++++++++.+++++++|+.....+.+|+|++|.|++++++|+.++++||+|+|.++..|+|++++++.+.+++|+++.||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~G~V~~v~g~ii~v~g~~~~~~ge~~~i~~~~~g~Vi~~~~~~~~~~~~~~~~gi 81 (501)
T TIGR00962 2 LKLEEISELIKQEIKNFEKDIEMEEVGTVVSVGDGIARVYGLENVMSGELIEFEGGVQGIALNLEEDSVGAVIMGDYSNI 81 (501)
T ss_pred CChHHHHHHHHHHHHhcCCcceeEEEEEEEEEeCCEEEEECCcCCCCCCEEEECCCeEEEEEEecCCeEEEEEecCCcCC
Confidence 57889999999999999998889999999999999999999989999999999878999999999999999999999999
Q ss_pred CCCCEEEEcCCccccccCccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCC
Q psy2894 83 TEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKG 162 (515)
Q Consensus 83 ~~G~~V~~tg~~~~vpvg~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrG 162 (515)
+.|++|.+||++++||||++|||||+|++|+|||+++++....++|++..+|++++|.++++||+||||+||+|+|||||
T Consensus 82 ~~G~~V~~tg~~~~v~vg~~llGRV~d~~G~pld~~~~~~~~~~~~i~~~~p~~~~R~~i~~pl~TGi~aID~l~pigrG 161 (501)
T TIGR00962 82 REGSTVKRTGRILKVPVGDGLLGRVVNALGQPIDGKGPIDSDEFRPIEKIAPGVMERKSVHEPLQTGIKAIDAMIPIGRG 161 (501)
T ss_pred CCCCeeEecCCccEEecChHhcCCEeCCCCCeeCCCCCcCCCCceeeecCCCChhhcCCcCceeccCCceeeccCCcccC
Confidence 99999999999999999999999999999999999998877778899999999999999999999999999999999999
Q ss_pred cceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhh
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSG 242 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a 242 (515)
||+||||++|||||+|+++||+||+++|++|||++||||++||++|++++.+.++|+||++|++|+|+||.+|++|||+|
T Consensus 162 Qr~~I~g~~g~GKt~Lal~~i~~~~~~dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~~a~~~a 241 (501)
T TIGR00962 162 QRELIIGDRQTGKTAVAIDTIINQKDSDVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQYLAPYTG 241 (501)
T ss_pred CEEEeecCCCCCccHHHHHHHHhhcCCCeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCC
Q psy2894 243 CTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTG 322 (515)
Q Consensus 243 ~~iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~G 322 (515)
||+||||||+|+|||++|||+||||+||||||+++||||+++|||||+||+||||+||||+++++ .| +|
T Consensus 242 ~aiAEyfrd~G~~VLlv~Ddltr~A~A~REisl~lgepP~~~gYP~~vf~~~srLlERag~~~~~----------~g-~G 310 (501)
T TIGR00962 242 CTMAEYFRDNGKHALIIYDDLSKHAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDE----------KG-GG 310 (501)
T ss_pred HHHHHHHHHcCCCEEEEecchHHHHHHHHHHHHhcCCCCcccCcCchHHHHHHHHHHHHhhccCC----------CC-Cc
Confidence 99999999999999999999999999999999999999999999999999999999999998643 44 89
Q ss_pred ceeeeeEEeecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHHHhhHH
Q psy2894 323 SLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRE 402 (515)
Q Consensus 323 SiT~l~~v~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~la~y~e 402 (515)
|||++|+|+|++||++||||||++|||||||||||+||++||||||||+.|+||+|+++|.++|+++|+++|.+|++|+|
T Consensus 311 SITal~~V~~~~dD~s~pI~~~~~sItDGqIvLsr~La~~G~~PAIdv~~SvSRv~~~~~~~~~~~~a~~lr~~la~y~e 390 (501)
T TIGR00962 311 SLTALPIIETQAGDVSAYIPTNVISITDGQIFLESDLFNSGIRPAINVGLSVSRVGGAAQIKAMKQVAGSLRLELAQYRE 390 (501)
T ss_pred ceEEEEEEECCCCCCCCcchHhhhhhcceEEEEcHhHHhCCCCCccCCccchhccCccccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCHHHHHHHHhhHHHhhcccccccCCCCHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHHhhchHH
Q psy2894 403 LAAFSQFSSDLDLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFMKTCQNSI 482 (515)
Q Consensus 403 l~~~~~~g~~ld~~~~~~l~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~~~G~ld~v~~~~v~~f~~~l~~~l~~~~~ei 482 (515)
+++|++||+++|++++.+++++++|++||+|+.++++++++|+..+|++.||+||++++++++.|+..+++|++++++++
T Consensus 391 ~~~l~~~g~~ld~~~~~~l~~~~~i~~fL~Q~~~~~~~~~~q~~~l~a~~~G~l~~v~~~~i~~~~~~l~~~l~~~~~~~ 470 (501)
T TIGR00962 391 LEAFSQFASDLDEATKAQLERGKRLVELLKQPQYKPLPVEEQVVILYAGTKGYLDDIPVDKVRKFEQELLDYLDANHPDI 470 (501)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHhhhhh
Q psy2894 483 LEKIKNVNEFNADIEDSLTTILINFKKSYDA 513 (515)
Q Consensus 483 ~~~i~~~~~l~~e~~~~l~~~~~~f~~~f~~ 513 (515)
++.|++++.|++++++.|++++++|.+.|.+
T Consensus 471 ~~~i~~~~~l~~~~~~~L~~~i~~~~~~f~~ 501 (501)
T TIGR00962 471 LEEINTKKKLTEELEDKLKEALKNFKKTFAA 501 (501)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999998853
No 6
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=1e-135 Score=1094.75 Aligned_cols=501 Identities=65% Similarity=1.053 Sum_probs=490.6
Q ss_pred CCCChHHHHHHHHHHHHcccCccCccceeEEEEEECcEEEEEecCCCcccCEEEEcCCceEEEEEEeCCeEEEEEeCCCC
Q psy2894 1 MKINASEISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVFGLALNLERDSIGAVILGKYE 80 (515)
Q Consensus 1 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~~~~~g~V~~l~~~~v~~~~~~~~~ 80 (515)
|+++++++.+++++++++|+.......+|+|++|.|++++++|++++++||+|+|.++..|+|++++++.+.+++|+++.
T Consensus 1 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~G~V~~v~g~~v~v~g~~~~~~ge~~~i~~~~~g~Vi~~~~~~~~~~~~~~~~ 80 (502)
T PRK09281 1 MQINPEEISAIIKQQIENFDAEAEVEEVGTVISVGDGIARVYGLDNVMAGELLEFPGGVYGIALNLEEDNVGAVILGDYE 80 (502)
T ss_pred CCCCHHHHHHHHHHHHHhcCCcceeEEEEEEEEEeCCEEEEECccccccCCEEEECCCcEEEEEEEcCCeEEEEEecCcc
Confidence 67788999999999999999988899999999999999999999899999999998789999999999999999999999
Q ss_pred CCCCCCEEEEcCCccccccCccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCcccccccccccccccccc
Q psy2894 81 HITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIG 160 (515)
Q Consensus 81 gi~~G~~V~~tg~~~~vpvg~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pig 160 (515)
||+.|++|.+||++++||||++|||||+|++|+|||+++++...+++|++..||++++|.++++||+||||+||+|+|||
T Consensus 81 gi~~g~~V~~~~~~~~v~vg~~llGrv~d~~G~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~~~l~TGi~~ID~l~pig 160 (502)
T PRK09281 81 DIKEGDTVKRTGRILEVPVGEALLGRVVNPLGQPIDGKGPIEATETRPVERKAPGVIDRKSVHEPLQTGIKAIDAMIPIG 160 (502)
T ss_pred cccCCCeeeecCCceEEecCHHhcCCEEccCCCCcCCCCCCCCCceecccCCCcCccccCCccceeecCCeeeecccccc
Confidence 99999999999999999999999999999999999999998888889999999999999999999999999999999999
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHh
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAY 240 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~ 240 (515)
||||++|||++|+|||+||++||+||+++|++|||++||||++||++|++++++.++|+||++|++|+|+||.+|++|||
T Consensus 161 rGQr~~Ifg~~g~GKt~lal~~i~~~~~~dv~~V~~~IGer~~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r~~a~~ 240 (502)
T PRK09281 161 RGQRELIIGDRQTGKTAIAIDTIINQKGKDVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQYLAPY 240 (502)
T ss_pred cCcEEEeecCCCCCchHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCccceEEEEeCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCC
Q psy2894 241 SGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGK 320 (515)
Q Consensus 241 ~a~~iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~ 320 (515)
+|||+||||||+|+|||++|||+||||+||||||+++||||+++|||||+||+||||+||||+++.. .+
T Consensus 241 ~a~tiAEyfrd~G~~VLli~DdlTr~A~A~REisl~~gepPgr~gyP~~vf~~~s~LlERag~~~~~----------~~- 309 (502)
T PRK09281 241 AGCAMGEYFMDNGKDALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDE----------LG- 309 (502)
T ss_pred HHHHHHHHHHHcCCCEEEEecCchHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHHhhhccCC----------CC-
Confidence 9999999999999999999999999999999999999999999999999999999999999998542 34
Q ss_pred CCceeeeeEEeecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHHHhh
Q psy2894 321 TGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQY 400 (515)
Q Consensus 321 ~GSiT~l~~v~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~la~y 400 (515)
+||||+||+|+|++||++||||||++|||||||||||+||++||||||||+.|+||+|++++.++|+++|+++|+.|++|
T Consensus 310 ~GSITal~~V~~~~dD~s~pI~d~~~sItDGqIvLsr~La~~G~~PAIdv~~SvSRv~~~~~~~~~~~~a~~lr~~la~y 389 (502)
T PRK09281 310 GGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESDLFNAGIRPAINVGISVSRVGGAAQIKAMKKVAGTLRLDLAQY 389 (502)
T ss_pred CccEEEEEEEECCCCCCCCcchHhhhcccceEEEEcHHHHhCCCCCccCCcccccccCCccCCHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCHHHHHHHHhhHHHhhcccccccCCCCHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHHhhch
Q psy2894 401 RELAAFSQFSSDLDLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFMKTCQN 480 (515)
Q Consensus 401 ~el~~~~~~g~~ld~~~~~~l~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~~~G~ld~v~~~~v~~f~~~l~~~l~~~~~ 480 (515)
+|+++|+++|+++|++++.+++++++|++||+|++++++++++|+..+|++.||+|+++|.+++++|++.+++++++.++
T Consensus 390 ~e~~~l~~~g~~l~~~~~~~l~~~~~i~~fL~Q~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~i~~~~~~~~~~l~~~~~ 469 (502)
T PRK09281 390 RELEAFAQFGSDLDEATRAQLERGQRLVELLKQPQYSPLPVEEQVVILYAGTNGYLDDVPVEKVRRFEAELLAYLRSNHA 469 (502)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHhhhh
Q psy2894 481 SILEKIKNVNEFNADIEDSLTTILINFKKSYD 512 (515)
Q Consensus 481 ei~~~i~~~~~l~~e~~~~l~~~~~~f~~~f~ 512 (515)
++++.|++++.|+++.++.|++++++|.+.|.
T Consensus 470 ~~~~~I~~~~~l~~~~~~~L~~~i~~~~~~f~ 501 (502)
T PRK09281 470 DLLEEIRETKDLSDEIEAKLKAAIEEFKKTFA 501 (502)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999885
No 7
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=2.2e-131 Score=1051.92 Aligned_cols=466 Identities=35% Similarity=0.540 Sum_probs=454.2
Q ss_pred eEEEEEECcEEEEEecCCCcccCEEEEcCC--ceEEEEEEeCCeEEEEEeCCCCCCCCCCEEEEcCCccccccCccccce
Q psy2894 29 GKVISVFDGICQIYGLSNAMQGEMLEFPGN--VFGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGR 106 (515)
Q Consensus 29 G~V~~I~g~iv~v~Gl~~~~~gElv~~~~~--~~g~V~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvg~~lLGr 106 (515)
-+|++|.|++++|+|++++++||+|+|.++ ..|+|++++++.+++++|+++.+|+.|++|++||++++||||++||||
T Consensus 3 ~~V~~v~~~i~~v~Gl~~~~~ge~~~~~~~~~~~g~V~~~~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~lLGR 82 (507)
T PRK07165 3 PKIKSIFDYIVEVKGEYDYQQNQFFTLKNNPNVKAFVISATEDKAYLLINNEKGKIKINDELIELNNTNKVKTSKEYFGK 82 (507)
T ss_pred CEEEEEeceEEEEEcccCCCcCCEEEECCCCeEEEEEEEEeCCeEEEEEccCccCCCCCCEEEECCCccEEECCccccCC
Confidence 489999999999999989999999999866 899999999999999999999999999999999999999999999999
Q ss_pred EecccCCcCCCCCCCCc-----ccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCccHHHHH
Q psy2894 107 VINALGDPIDGKGPIKT-----KLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAID 181 (515)
Q Consensus 107 ViD~lG~pid~~~~~~~-----~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GKt~l~~~ 181 (515)
|+|++|+|||+++++.. ...+|++.+||++++|+++++||+||||+||+|+|||||||++||||+|||||+|+++
T Consensus 83 Vvd~lG~piDg~g~i~~~~~~~~~~~~i~~~ap~~~~R~~v~epL~TGIkaID~l~pigrGQR~~Ifg~~gtGKT~lal~ 162 (507)
T PRK07165 83 IIDIDGNIIYPEAQNPLSKKFLPNTSSIFNLAHGLMTVKTLNEQLYTGIIAIDLLIPIGKGQRELIIGDRQTGKTHIALN 162 (507)
T ss_pred EECCCCcccCCCCCCCcccccccccccccCCCCCchhhCCCCceeecCchhhhhcCCcccCCEEEeecCCCCCccHHHHH
Confidence 99999999999997765 4567999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEe
Q psy2894 182 IIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYD 261 (515)
Q Consensus 182 ~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~D 261 (515)
||+||+++|++|||++||||++||++|+++++++|+|+||++|++|+ +||++||+|||+|||+|||||++ +|||+|||
T Consensus 163 ~I~~q~~~dv~~V~~~IGer~~ev~~~~~~l~~~gal~~tvvV~ats-d~~~~r~~ap~~a~tiAEyfrd~-~dVLlv~D 240 (507)
T PRK07165 163 TIINQKNTNVKCIYVAIGQKRENLSRIYETLKEHDALKNTIIIDAPS-TSPYEQYLAPYVAMAHAENISYN-DDVLIVFD 240 (507)
T ss_pred HHHHhcCCCeEEEEEEccCChHHHHHHHHHhhhcCceeeeEEEEeCC-CCHHHHHHHHHHHHHHHHHHHhc-CceEEEEc
Confidence 99999999999999999999999999999999999999999999998 59999999999999999999999 99999999
Q ss_pred chhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEeecCCCCCCcc
Q psy2894 262 DLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFV 341 (515)
Q Consensus 262 sltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~~~~D~s~pI 341 (515)
||||||+||||||+++||||||+|||||+||.|||||||||++ .| +||||++|+|+|++||++|||
T Consensus 241 dLTr~A~A~REisLllgepPgregYPg~vF~~~srLlERAg~~-------------~g-~GSITalpiV~t~~dDis~pI 306 (507)
T PRK07165 241 DLTKHANIYREIALLTNKPVGKEAFPGDMFFAHSKLLERAGKF-------------KN-RKTITALPILQTVDNDITSLI 306 (507)
T ss_pred ChHHHHHHHHHHHhhccCCCCccCCCchHHHHhHHHHHhccCC-------------CC-CCceEEEEEEECCCCCCCCcc
Confidence 9999999999999999999999999999999999999999998 44 799999999999999999999
Q ss_pred cccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCHHHHHHH
Q psy2894 342 PTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSSDLDLVTRKQL 421 (515)
Q Consensus 342 ~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~la~y~el~~~~~~g~~ld~~~~~~l 421 (515)
|||++|||||||||||+||++||||||||+.|+||+|+++|.+.|+++|+.+|.+|++|+|+++|++|++++|+++++++
T Consensus 307 pdnv~sItDGqIvLsr~L~~~G~~PAIDvl~SvSRv~~~~q~~~~~~~a~~~r~~la~Y~e~e~~~~~~~~ld~~~~~~l 386 (507)
T PRK07165 307 SSNIISITDGQIVTSSDLFASGKLPAIDIDLSVSRTGSSVQSKTITKVAGEISKIYRAYKRQLKLSMLDYDLNKETSDLL 386 (507)
T ss_pred hhhhccccCeEEEEcHHHHhCCCCCCcCCccchhhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHhhcccccccCCCCHHHHHHHHHHHhcCcccccch-hHHHHHHHHHHHHHHhhchHHHHHHHhccCCCHHHH-HH
Q psy2894 422 DRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEI-KKILNFESSLYKFMKTCQNSILEKIKNVNEFNADIE-DS 499 (515)
Q Consensus 422 ~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~~~G~ld~v~~-~~v~~f~~~l~~~l~~~~~ei~~~i~~~~~l~~e~~-~~ 499 (515)
+++++|++||+|++++|++.++|+..++++.||+|+++|+ +++.+|++.++++ +..++++++.|.+++.+++++. ++
T Consensus 387 ~~g~~i~~~L~Q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~ 465 (507)
T PRK07165 387 FKGKMIEKMFNQKGFSLYSYRFVLLISKLISWGLLKDVKDEQKALDFIDYLIEN-DPDAKKIFNKIKNNEDVDDELMKNY 465 (507)
T ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhhhhhhCCcHHHHHHHHHHHHHh-hhhhHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999997 9999999999999 9999999999999999999998 99
Q ss_pred HHHHHHHHHhhh
Q psy2894 500 LTTILINFKKSY 511 (515)
Q Consensus 500 l~~~~~~f~~~f 511 (515)
|..++++|++..
T Consensus 466 ~~~~~~~~~~~~ 477 (507)
T PRK07165 466 FAFLLNQYSDYV 477 (507)
T ss_pred HHHHHHHHHHhc
Confidence 999999998854
No 8
>PTZ00185 ATPase alpha subunit; Provisional
Probab=100.00 E-value=8.5e-129 Score=1025.20 Aligned_cols=475 Identities=44% Similarity=0.703 Sum_probs=440.3
Q ss_pred ccceeEEEEEECcEEEE---EecCCCcccCEEEE---cCC-ceEEEEEEeCC-eEEEEEeCCCCCCCCCCEEEEcCCccc
Q psy2894 25 IYNQGKVISVFDGICQI---YGLSNAMQGEMLEF---PGN-VFGLALNLERD-SIGAVILGKYEHITEGDIVKCTGRILE 96 (515)
Q Consensus 25 ~~~~G~V~~I~g~iv~v---~Gl~~~~~gElv~~---~~~-~~g~V~~l~~~-~v~~~~~~~~~gi~~G~~V~~tg~~~~ 96 (515)
..+.|+|.+|.|+|++| +|++++++||+++| .++ ..|+|+++++| .+.+++|+++.+|++|++|++||++++
T Consensus 37 ~~~~G~V~~v~~gia~v~~v~Gl~~~~~gElv~f~~~~~~~~~G~vlnl~~d~~v~~v~lg~~~gI~~G~~V~~tg~~~~ 116 (574)
T PTZ00185 37 TEMIGYVHSIDGTIATLIPAPGNPGVAYNTIIMIQVSPTTFAAGLVFNLEKDGRIGIILMDNITEVQSGQKVMATGKLLY 116 (574)
T ss_pred heeeEEEEEEcCeEEEEeecCCCcccccCceEEEEcCCCCeEEEEEEEecCCCeEEEEEecCccCCCCCCEEEECCCccE
Confidence 46789999998889996 89999999999999 333 58999999999 699999999999999999999999999
Q ss_pred cccCccccceEecccCCcCCCC------CCCCcc-cccccccCCCCccccCCCccccccccccccccccccCCcceeeec
Q psy2894 97 VPIGPELCGRVINALGDPIDGK------GPIKTK-LTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIG 169 (515)
Q Consensus 97 vpvg~~lLGrViD~lG~pid~~------~~~~~~-~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g 169 (515)
||||++|||||+|++|+|||++ +++... .++|++..||++++|+++++||+||||+||+|+|||||||++|||
T Consensus 117 VpVG~~lLGRVvD~lG~PIDg~~~~~~~g~i~~~~~~~pIe~~ap~~~~R~~v~epL~TGIkaID~LiPIGRGQR~lIfG 196 (574)
T PTZ00185 117 IPVGAGVLGKVVNPLGHEVPVGLLTRSRALLESEQTLGKVDAGAPNIVSRSPVNYNLLTGFKAVDTMIPIGRGQRELIVG 196 (574)
T ss_pred EECCcccccCEECCCCcccCCCCccccCCCCCcccccccccCCCcChhhcCCCCCcCcCCceeeeccccccCCCEEEeec
Confidence 9999999999999999999988 455544 467999999999999999999999999999999999999999999
Q ss_pred CCCCCccHHHHHHHHHhc--------CCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhh
Q psy2894 170 DRQTGKSSIAIDIIINQK--------NKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYS 241 (515)
Q Consensus 170 ~~g~GKt~l~~~~i~~~~--------~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~ 241 (515)
|+|||||+||+++|+||+ +.+++|||++||||++||++++++|+++|+|+||++|++++|+||++||++||+
T Consensus 197 d~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~r~~Apy~ 276 (574)
T PTZ00185 197 DRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGLQYLAPYS 276 (574)
T ss_pred CCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHHHHHHHHH
Confidence 999999999999999997 345789999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCC
Q psy2894 242 GCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKT 321 (515)
Q Consensus 242 a~~iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~ 321 (515)
|||+||||||+|+|||++||||||||+||||||+++||||+|+|||||+||+||||+||||+++.. .| +
T Consensus 277 a~tiAEYFrd~GkdVLiv~DDLTr~A~A~REISLllgrpPgRegYPgdVF~lhsrLlERAg~l~~~----------~G-~ 345 (574)
T PTZ00185 277 GVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAAMLSPG----------KG-G 345 (574)
T ss_pred HHHHHHHHHHcCCCEEEEEcCchHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHhcccccCC----------CC-C
Confidence 999999999999999999999999999999999999999999999999999999999999998653 45 8
Q ss_pred CceeeeeEEeecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHHHhhH
Q psy2894 322 GSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYR 401 (515)
Q Consensus 322 GSiT~l~~v~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~la~y~ 401 (515)
||||+||+|+|++||++||||||++|||||||||||+||++|+||||||+.|+||+|+++|.+.|+++|+++|+.|++|+
T Consensus 346 GSITAlpiV~t~adDis~pIptnviSItDGqIvLsr~Lf~~GiyPAIDVl~SvSRvg~~aq~~~~k~vAg~lr~~LaqY~ 425 (574)
T PTZ00185 346 GSVTALPIVETLSNDVTAYIVTNVISITDGQIYLDTKLFTGGQRPAVNIGLSVSRVGSSAQNVAMKAVAGKLKGILAEYR 425 (574)
T ss_pred cceEEEEEEEccCCCCCCcchHhhhhhcCeEEEEcHHHHhCCCCCCcCCcccccccCCccCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCHHHHHHHHhhHHHhhcccccccCCCCHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHH------
Q psy2894 402 ELAAFSQFSSDLDLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFM------ 475 (515)
Q Consensus 402 el~~~~~~g~~ld~~~~~~l~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~~~G~ld~v~~~~v~~f~~~l~~~l------ 475 (515)
|++.|++||+++|+ ..|+||++++++|+|++ |+++++|+..+|++.+|+||++|++++..++..+.+.=
T Consensus 426 El~~fa~fgsdld~---~~l~rG~r~~ellkQ~~--p~~~~~qv~~l~a~~~g~ld~~~~~~i~~~~~~~~~~~~~~~~~ 500 (574)
T PTZ00185 426 KLAADSVGGSQVQT---VPMIRGARFVALFNQKN--PSFFMNALVSLYACLNGYLDDVKVNYAKLYEYLLVNKDLSVMYG 500 (574)
T ss_pred HHHHHHhhcchhhH---HHHHhhHHHHHHHCCCC--CCCHHHHHHHHHHHhcCCcccCcHHHHHHHHHhccCCcceeeee
Confidence 99999999999999 78999999999999999 99999999999999999999999999998887776520
Q ss_pred H-hhch--HHHHHH--------HhccCCCHHHHHHHHHHHHHHHhhhhhcC
Q psy2894 476 K-TCQN--SILEKI--------KNVNEFNADIEDSLTTILINFKKSYDAKI 515 (515)
Q Consensus 476 ~-~~~~--ei~~~i--------~~~~~l~~e~~~~l~~~~~~f~~~f~~~~ 515 (515)
. .++. .+.+++ .+..-|+.|.++.|++..--|.++|..||
T Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (574)
T PTZ00185 501 TATNKFFYMYVQQLNYVIRFFTLNHPILNAEVEEMLKQHTHLFLQHYQSKM 551 (574)
T ss_pred cccchhHHHHHHhhhheeeEeecCChhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 0111 111222 23557889999999999999999997765
No 9
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=3.6e-117 Score=944.41 Aligned_cols=435 Identities=23% Similarity=0.336 Sum_probs=412.7
Q ss_pred cceeEEEEEECcEEEEEecCCCcccCEEEEc--CC--ceEEEEEEeCCeEEEEEeCCCCCCC-CCCEEEEcCCccccccC
Q psy2894 26 YNQGKVISVFDGICQIYGLSNAMQGEMLEFP--GN--VFGLALNLERDSIGAVILGKYEHIT-EGDIVKCTGRILEVPIG 100 (515)
Q Consensus 26 ~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~--~~--~~g~V~~l~~~~v~~~~~~~~~gi~-~G~~V~~tg~~~~vpvg 100 (515)
..||+|++|.|++++++|++++.+||+|+|. ++ ..|+|++++++.+.+++|+++.||+ .|++|.+||++++||||
T Consensus 2 ~~yg~V~~i~g~~v~v~g~~~~~~ge~~~i~~~~~~~~~geVi~~~~~~~~l~~~~~t~gl~i~G~~V~~tg~~~~V~vg 81 (460)
T PRK04196 2 KEYRTVSEIKGPLLFVEGVEGVAYGEIVEIELPNGEKRRGQVLEVSEDKAVVQVFEGTTGLDLKDTKVRFTGEPLKLPVS 81 (460)
T ss_pred ceeEEEEEEECcEEEEeccCCCCCCCEEEEEcCCCCEEEEEEEEEeCCeEEEEEccCCCCCCCCCCEEEeCCCccEEEcC
Confidence 4689999999999999998899999999995 34 5899999999999999999999999 89999999999999999
Q ss_pred ccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCccHHHH
Q psy2894 101 PELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAI 180 (515)
Q Consensus 101 ~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GKt~l~~ 180 (515)
++|||||+|++|+|||+++++....++|++..+|+|++|+++++||+||||+||+|+|||||||+||||++|+|||+| +
T Consensus 82 ~~lLGRVvD~~G~PlD~~~~i~~~~~~~i~~~ap~~l~R~~i~epl~TGi~~ID~l~pig~GQR~gIfgg~G~GKs~L-~ 160 (460)
T PRK04196 82 EDMLGRIFDGLGRPIDGGPEIIPEKRLDINGAPINPVAREYPEEFIQTGISAIDGLNTLVRGQKLPIFSGSGLPHNEL-A 160 (460)
T ss_pred cccccCEECccCCCccCCCCCCCCccCcccCCCCChhhcCCCCccccCCeEEEeccCcccCCCEEEeeCCCCCCccHH-H
Confidence 999999999999999999988777788999999999999999999999999999999999999999999999999999 5
Q ss_pred HHHHHhcCC-----CeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHH-HcCC
Q psy2894 181 DIIINQKNK-----NVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFR-DHGK 254 (515)
Q Consensus 181 ~~i~~~~~~-----~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~fr-d~G~ 254 (515)
.+|+++++. +++|||++||||++||++|++++.+.++|+||++|++|+|+||.+|+++||+||||||||| |+|+
T Consensus 161 ~~ia~~~~~d~~~~~~v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~tiAEyfr~d~G~ 240 (460)
T PRK04196 161 AQIARQAKVLGEEENFAVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERILTPRMALTAAEYLAFEKGM 240 (460)
T ss_pred HHHHHhhhhccCCCceEEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 789988644 4679999999999999999999999999999999999999999999999999999999999 7999
Q ss_pred cEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEeecC
Q psy2894 255 DALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQA 334 (515)
Q Consensus 255 ~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~~~ 334 (515)
|||+++||+||||+|+||||+++||||+++|||||+|+.||+|+||||+++. ++||||+||+|++++
T Consensus 241 ~VLli~DslTR~A~A~REIsl~~gepP~~~gYP~~vf~~l~~LlERaG~~~~-------------~~GSITai~~V~~~g 307 (460)
T PRK04196 241 HVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIKG-------------KKGSITQIPILTMPD 307 (460)
T ss_pred cEEEEEcChHHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHHhhcCCC-------------CCeeeEEEEEEEcCC
Confidence 9999999999999999999999999999999999999999999999999742 389999999999999
Q ss_pred CCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCcccccccc-----chHHHHHHHHHHHHHHHhhHHHHHHHHh
Q psy2894 335 GDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAA-----QIKFIKKLSSNIRTDLAQYRELAAFSQF 409 (515)
Q Consensus 335 ~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~-----~~~~~~~~a~~lr~~la~y~el~~~~~~ 409 (515)
||++||||||++|||||||+|||+||++||||||||+.|+||+|+++ |.+.|++++.+++..|++|+++++|.++
T Consensus 308 dD~~dpI~d~~~sI~DG~ivLsr~La~~g~~PAIDvl~SvSR~~~~~~~~~~~~~~~~~~a~~l~~~y~~~~~l~~~~~~ 387 (460)
T PRK04196 308 DDITHPIPDLTGYITEGQIVLSRELHRKGIYPPIDVLPSLSRLMKDGIGEGKTREDHKDVANQLYAAYARGKDLRELAAI 387 (460)
T ss_pred CCCCCchhhhhhhhcceEEEEcHHHHhCCCCCccCCccchhhhccccCCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999997654 4499999999999999999999999998
Q ss_pred -c-cCCCHHHHHHHHhhHHHh-hcccccccCCCCHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHHhh
Q psy2894 410 -S-SDLDLVTRKQLDRGARVT-ELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFMKTC 478 (515)
Q Consensus 410 -g-~~ld~~~~~~l~~~~~i~-~~L~Q~~~~~~~~~~~~~~l~~~~~G~ld~v~~~~v~~f~~~l~~~l~~~ 478 (515)
| ++++++++..+.+++++. +||+|++++++++++++..+| ++|+++|.+++.+|...+++.+...
T Consensus 388 ~G~~~l~d~~~~~~~~~~~~~~~fL~Q~~~~~~~~~~~~~~l~----~~l~~~~~~~l~~~~~~l~~~~~~~ 455 (460)
T PRK04196 388 VGEEALSERDRKYLKFADAFEREFVNQGFDENRSIEETLDLGW----ELLSILPESELKRIKDEYIEKYHPK 455 (460)
T ss_pred cCCCcCCHHHHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHH----HHHhhCCHHHHHHHHHHHHHHhccc
Confidence 6 689999999999999996 799999999999999999988 7889999999999999998865443
No 10
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=2.4e-116 Score=935.78 Aligned_cols=432 Identities=23% Similarity=0.326 Sum_probs=410.8
Q ss_pred ceeEEEEEECcEEEEEecCCCcccCEEEEc--CC--ceEEEEEEeCCeEEEEEeCCCCCCCCCCE-EEEcCCccccccCc
Q psy2894 27 NQGKVISVFDGICQIYGLSNAMQGEMLEFP--GN--VFGLALNLERDSIGAVILGKYEHITEGDI-VKCTGRILEVPIGP 101 (515)
Q Consensus 27 ~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~--~~--~~g~V~~l~~~~v~~~~~~~~~gi~~G~~-V~~tg~~~~vpvg~ 101 (515)
+|++|++|.|++++++|++++++||+|+|. ++ ..|+|++++++.+.+++|+++.||+.|+. |.+||++++||||+
T Consensus 1 ~y~~v~~i~g~iv~v~g~~~~~~ge~~~i~~~~~~~~~geVv~~~~~~~~l~~~~~t~gi~~g~~~V~~tg~~~~v~vg~ 80 (458)
T TIGR01041 1 EYSTITEIAGPLVFVEGVEPVAYNEIVEIETPDGEKRRGQVLDSSEGLAVVQVFEGTTGLDPTGTKVRFTGETLKLPVSE 80 (458)
T ss_pred CccEEEEEEccEEEEEccCCCCcCCEEEEEcCCCcEEEEEEEEEECCEEEEEEecCCcCcCCCCcEEEECCCceEEEcCh
Confidence 479999999999999998899999999994 34 57999999999999999999999999986 99999999999999
Q ss_pred cccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCccHHHHH
Q psy2894 102 ELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAID 181 (515)
Q Consensus 102 ~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GKt~l~~~ 181 (515)
+|||||+|++|+|||+++++....++|++..+|+|++|.++++||+||||+||+|+|||||||+||||++|+|||+| +.
T Consensus 81 ~lLGRViD~~G~plD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~~ID~l~pig~GQR~gIfgg~G~GKs~L-~~ 159 (458)
T TIGR01041 81 DMLGRILNGSGEPIDGGPEIVPDERRDINGAPINPYAREYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNEL-AA 159 (458)
T ss_pred hhccCEEccCCcccCCCCCCCccceeeccCCCCChhhcCCCCCcCCCCeEEEEccCccccCCEEEeeCCCCCCHHHH-HH
Confidence 99999999999999999888777789999999999999999999999999999999999999999999999999999 57
Q ss_pred HHHHhcCCC-----eEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHH-HcCCc
Q psy2894 182 IIINQKNKN-----VTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFR-DHGKD 255 (515)
Q Consensus 182 ~i~~~~~~~-----~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~fr-d~G~~ 255 (515)
+|++|++.| ++|||++||||++||++|++++.+.++|+|||+|++|+|+||.+|+++||+|+|+||||| |+|+|
T Consensus 160 ~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiAEyfr~d~G~~ 239 (458)
T TIGR01041 160 QIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAFEKDMH 239 (458)
T ss_pred HHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 899987544 579999999999999999999999999999999999999999999999999999999999 69999
Q ss_pred EEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEeecCC
Q psy2894 256 ALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAG 335 (515)
Q Consensus 256 Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~~~~ 335 (515)
||+++||+||||+|+||||+++||||+++|||||+|+.||+|+||||+++. ++||||+||+|++++|
T Consensus 240 VLli~DslTR~A~A~REIsl~~gepP~~~GYP~svfs~l~~LlERaG~~~~-------------~~GSITai~tV~~~gd 306 (458)
T TIGR01041 240 VLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVKG-------------KKGSITQMPILTMPGD 306 (458)
T ss_pred EEEEEcChhHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHhcccCCC-------------CCcceEEEEEEEcCCC
Confidence 999999999999999999999999999999999999999999999999732 3899999999999999
Q ss_pred CCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccc-----cchHHHHHHHHHHHHHHHhhHHHHHHHHh-
Q psy2894 336 DISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGA-----AQIKFIKKLSSNIRTDLAQYRELAAFSQF- 409 (515)
Q Consensus 336 D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~-----~~~~~~~~~a~~lr~~la~y~el~~~~~~- 409 (515)
|++|||||+++|||||||+|||+||++||||||||+.|+||+|+. ++.++|++++++++..|+++++|+++.++
T Consensus 307 D~~dPI~d~~~sIlDGhivLsr~La~~G~yPAIDvl~SvSR~~~~~ig~~~~~~~~~~~a~~l~~~y~~~~~L~~i~~~~ 386 (458)
T TIGR01041 307 DITHPIPDLTGYITEGQIVLSRELHRKGIYPPINVLPSLSRLMKDGIGEGKTREDHKDVSDQLYAAYAEGRDLRGLVAIV 386 (458)
T ss_pred CCCCchHHhhhhhcceEEEEcHHHHhCCCCCccCCccchhhcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999876 78899999999999999999999999998
Q ss_pred cc-CCCHHHHHHHHhhHHH-hhcccccccCCCCHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHH
Q psy2894 410 SS-DLDLVTRKQLDRGARV-TELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFMK 476 (515)
Q Consensus 410 g~-~ld~~~~~~l~~~~~i-~~~L~Q~~~~~~~~~~~~~~l~~~~~G~ld~v~~~~v~~f~~~l~~~l~ 476 (515)
|+ +++++++..+.++++| ++||+|+.++++++++++..+| ++++.+|.+++.+|.+.+++.+.
T Consensus 387 G~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~~~~~l~----~~l~~~~~~~~~~~~~~~~~~~~ 451 (458)
T TIGR01041 387 GEEALSERDRKYLKFADLFERRFVRQGRNENRSIEETLDIGW----ELLSILPESELKRIDEEYIEKYH 451 (458)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHH----HHHhhCCHHHHHHHHHHHHHHhc
Confidence 84 8999999999999995 7899999999999999999997 77889999999999999987653
No 11
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=100.00 E-value=1.6e-115 Score=899.39 Aligned_cols=423 Identities=29% Similarity=0.431 Sum_probs=403.0
Q ss_pred HHHHHHcccCccCccceeEEEEEECcEEEEEecCCCcccCEEEEcCC-----ceEEEEEEeCCeEEEEEeCCCCCCCCCC
Q psy2894 12 IQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGN-----VFGLALNLERDSIGAVILGKYEHITEGD 86 (515)
Q Consensus 12 l~~~i~~~~~~~~~~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~~~-----~~g~V~~l~~~~v~~~~~~~~~gi~~G~ 86 (515)
+.+....+.....+..+|+|++|.|.++++.| +++.+||+|.+... ..+||++|+++.+.++||++..|+.+|+
T Consensus 9 l~~~~~~~~~~~~~~~~G~v~~v~G~~lea~g-~~~~iGelc~i~~~~~~~~~~aEVvgf~~~~~~L~p~~~~~gv~~g~ 87 (441)
T COG1157 9 LDSLELALRNTDPYKRRGRLTRVTGLLLEAVG-PQARIGELCKIERSRGSEKVLAEVVGFNEERVLLMPFEPVEGVSPGA 87 (441)
T ss_pred hhhhhhhhccCCcceEEEEEEEEeeeEEEEec-CCCcccceEEEEecCCCCceeEEEEEEcCCeEEEeccCccccCCCCC
Confidence 33334455555778889999999999999999 68999999999631 2899999999999999999999999999
Q ss_pred EEEEcCCccccccCccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCccee
Q psy2894 87 IVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQREL 166 (515)
Q Consensus 87 ~V~~tg~~~~vpvg~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~ 166 (515)
+|.++|+.+++|+|++|||||+|++|+||||++.+....++|+...||+|+.|.++++||.||||+||+|+|||+|||+|
T Consensus 88 ~V~~~~~~~~v~~g~~lLGRVld~~G~plDg~~~~~~~~~~~l~~~pp~pm~R~~I~~~l~tGVRaIDgllT~G~GQRiG 167 (441)
T COG1157 88 EVVPTGRPLSVPVGDALLGRVLDGLGRPLDGGGLPDGTERRPLDAPPPNPLKRRPIEEPLDTGVRAIDGLLTCGKGQRIG 167 (441)
T ss_pred EEEecCCccccccChhhhhhhhccCCCcCcCCCCCCCcccccccCCCCCchhcccccccccccceeeecccccccCceeE
Confidence 99999999999999999999999999999998888888889999999999999999999999999999999999999999
Q ss_pred eecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhH
Q psy2894 167 IIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIG 246 (515)
Q Consensus 167 I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iA 246 (515)
||+++|+||||| |.||+++..+|+ +|+++||||+|||.||++.......|+|||+|+||||+||.+|..++++|++||
T Consensus 168 IFAgsGVGKStL-LgMiar~t~aDv-~ViaLIGERGREVrEFIE~~Lg~egl~rsViVvATSD~s~l~R~~aa~~At~IA 245 (441)
T COG1157 168 IFAGSGVGKSTL-LGMIARNTEADV-NVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESALMRLKAAFTATTIA 245 (441)
T ss_pred EEecCCCcHHHH-HHHHhccccCCE-EEEEEeeccchhHHHHHHHhcchhhccceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 999999999999 799999999997 588999999999999999888888899999999999999999999999999999
Q ss_pred HHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceee
Q psy2894 247 EYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTA 326 (515)
Q Consensus 247 E~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~ 326 (515)
|||||||+|||++|||+||||+|+|||+|++||||.++||||+||+.++||+||||+. ..||||+
T Consensus 246 EyFRDqG~~VLL~mDSlTRfA~AqREI~LA~GEpP~~kGYppSVF~~LP~LlERaG~~---------------~~GsITa 310 (441)
T COG1157 246 EYFRDQGKRVLLIMDSLTRFAMAQREIGLAAGEPPATKGYPPSVFSELPRLLERAGNG---------------DKGSITA 310 (441)
T ss_pred HHHHhCCCeEEEEeecHHHHHHHHHHHHHhcCCCCccCCCCchHHHHhHHHHhhcCCC---------------CCCcEEE
Confidence 9999999999999999999999999999999999999999999999999999999984 3799999
Q ss_pred eeEEeecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHHHhhHHHHHH
Q psy2894 327 IPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAF 406 (515)
Q Consensus 327 l~~v~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~la~y~el~~~ 406 (515)
||||+++|||++|||+|+++||+||||||||+||++||||||||+.|+||+|+.+.+++|++.|.++|.+|+.|+|.++|
T Consensus 311 fYTVLveGDD~~dPiaD~~RsILDGHIvLsR~LA~~ghyPaIdvl~SiSRvm~~i~~~~h~~~a~~~r~lls~y~e~edL 390 (441)
T COG1157 311 FYTVLVEGDDMNDPIADEVRSILDGHIVLSRALAEAGHYPAIDVLASISRVMPQIVSEEHRKAARRLRQLLSRYEENEDL 390 (441)
T ss_pred EEEEEeecCCCCCchhhhhhhhccceEEeeHhHHhcCCCCCcchHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhc---cCCCHHHHHHHHhhHHHhhcccccccCCCCHHHHHHHHHHHh
Q psy2894 407 SQFS---SDLDLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAIN 452 (515)
Q Consensus 407 ~~~g---~~ld~~~~~~l~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~~ 452 (515)
+++| .+-|++.++++++.+.|++||+|+..+..++++++..|..+.
T Consensus 391 i~iGaY~~G~D~~~D~Ai~~~p~i~~fL~Q~~~e~~~~~~t~~~L~~~~ 439 (441)
T COG1157 391 IRIGAYQKGSDPELDKAIKLYPKIEQFLKQGIDEKSSFEETLEQLEAIL 439 (441)
T ss_pred HHhcCccCCCCHHHHHHHHhhHHHHHHHcCCccccCCHHHHHHHHHHHh
Confidence 9999 489999999999999999999999999999999999887553
No 12
>PRK06936 type III secretion system ATPase; Provisional
Probab=100.00 E-value=8.2e-113 Score=901.78 Aligned_cols=428 Identities=26% Similarity=0.371 Sum_probs=409.8
Q ss_pred CChHHHHHHHHHHHHcccCccCccceeEEEEEECcEEEEEecCCCcccCEEEEcC-----CceEEEEEEeCCeEEEEEeC
Q psy2894 3 INASEISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPG-----NVFGLALNLERDSIGAVILG 77 (515)
Q Consensus 3 ~~~~~~~~~l~~~i~~~~~~~~~~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~~-----~~~g~V~~l~~~~v~~~~~~ 77 (515)
++.+++.+.+.+.++.. ...+.+|+|++|.|+++++.| +++.+||+|+|.. ...|+|++++++++.+++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~---~~~~~~G~V~~v~g~~v~~~~-~~~~~ge~~~i~~~~~~~~~~~eVv~~~~~~~~l~~~~ 77 (439)
T PRK06936 2 LSLDYIPHHLRHAIVGS---RLIQIRGRVTQVTGTILKAVV-PGVRIGELCYLRNPDNSLSLQAEVIGFAQHQALLTPLG 77 (439)
T ss_pred ccHHHHHHHHHHHHhcC---CccceeeEEEEEECcEEEEEe-CCCCCCCEEEEecCCCCcceEEEEEEEECCeEEEEecC
Confidence 57889999998888775 447889999999999999986 7999999999952 36899999999999999999
Q ss_pred CCCCCCCCCEEEEcCCccccccCccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccc
Q psy2894 78 KYEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIV 157 (515)
Q Consensus 78 ~~~gi~~G~~V~~tg~~~~vpvg~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~ 157 (515)
+++||+.|++|.+||++++||||++|||||+|++|+|||+++++....++|++..+|+|++|+++++||+|||++||.++
T Consensus 78 ~~~gi~~g~~V~~tg~~~~v~vg~~lLGRV~d~~G~plD~~~~~~~~~~~pi~~~~p~p~~R~~i~~~l~TGi~vid~l~ 157 (439)
T PRK06936 78 EMYGISSNTEVSPTGTMHQVGVGEHLLGRVLDGLGQPFDGGHPPEPAAWYPVYADAPAPMSRRLIETPLSLGVRVIDGLL 157 (439)
T ss_pred CCCCCCCCCEEEeCCCceEEEeCccccCCEECCCCCccCCCCCCCccceeeccCCCCChHHccccCCCCcCCcceeeeeE
Confidence 99999999999999999999999999999999999999999888777788999999999999999999999999999999
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHH
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFI 237 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~ 237 (515)
|+++|||++|||++|+||||| +.+|+++..+++ |||++||||+|||+||+++..+.+.|+||++|++|+|+||.+|++
T Consensus 158 ~i~~Gq~~~I~G~sG~GKStL-l~~Ia~~~~~dv-~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 158 TCGEGQRMGIFAAAGGGKSTL-LASLIRSAEVDV-TVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred EecCCCEEEEECCCCCChHHH-HHHHhcCCCCCE-EEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 999999999999999999999 799999999996 899999999999999998866667799999999999999999999
Q ss_pred HHhhhhhhHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcc
Q psy2894 238 SAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKV 317 (515)
Q Consensus 238 a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~ 317 (515)
+||+|+|+||||||+|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+.
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~DslTR~A~A~REisl~~gepP~~~gyp~svfs~l~~l~ERaG~~------------- 302 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQS------------- 302 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHHHHhcCCCCccccCCccHHHHHHHHHHhhccC-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999999973
Q ss_pred cCCCCceeeeeEEeecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHH
Q psy2894 318 TGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDL 397 (515)
Q Consensus 318 ~g~~GSiT~l~~v~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~l 397 (515)
++||||+||+|++++||++|||||+++||+||||+|||+||++||||||||+.|+||+|+.++.++|++++.++|++|
T Consensus 303 --~~GSIT~i~tVl~~gdD~~dpI~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~~~~~~~~~a~~~r~~l 380 (439)
T PRK06936 303 --DKGSITALYTVLVEGDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHKTWAGRLRELL 380 (439)
T ss_pred --CCcceeeeEEEEccCCCCCcchHHHhhhhcceEEEECHHHHhCCCCCccCCcccccccchhhCCHHHHHHHHHHHHHH
Confidence 389999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHhcc---CCCHHHHHHHHhhHHHhhcccccccCCCCHHHHHHHHHHH
Q psy2894 398 AQYRELAAFSQFSS---DLDLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAI 451 (515)
Q Consensus 398 a~y~el~~~~~~g~---~ld~~~~~~l~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~ 451 (515)
++|+|+++|+++|+ +.|++.++++.++++|++||+|+.++++++++++..|+.+
T Consensus 381 a~y~e~e~li~iG~y~~g~d~~~d~ai~~~~~i~~fL~Q~~~~~~~~~~~~~~l~~~ 437 (439)
T PRK06936 381 AKYEEVELLLQIGEYQKGQDKEADQAIERIGAIRGFLRQGTHELSHFNETLNLLETL 437 (439)
T ss_pred HcchHHHHHHHhcCccCCCCHHHHHHHHhHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 99999999999995 8999999999999999999999999999999999999865
No 13
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=100.00 E-value=4.4e-112 Score=902.83 Aligned_cols=425 Identities=23% Similarity=0.324 Sum_probs=398.1
Q ss_pred ccceeEEEEEECcEEEEEecCCCcc---cCEEEEc--C--C----ceEEEEEEeC-CeEEEEEeCCCCCCCCCCEEEEcC
Q psy2894 25 IYNQGKVISVFDGICQIYGLSNAMQ---GEMLEFP--G--N----VFGLALNLER-DSIGAVILGKYEHITEGDIVKCTG 92 (515)
Q Consensus 25 ~~~~G~V~~I~g~iv~v~Gl~~~~~---gElv~~~--~--~----~~g~V~~l~~-~~v~~~~~~~~~gi~~G~~V~~tg 92 (515)
.+.+|+|++|.|.+++|.|. .+.+ ||+|.+. + + +.+||+++.+ +.+.+++|+++.||+.|++|..||
T Consensus 13 ~~~~G~V~~v~G~viev~~~-~~~iP~ig~~~~i~~~~~~~~~~~~~~EVvg~~~~~~v~~~~l~~~~gi~~G~~V~~tg 91 (494)
T CHL00060 13 EKNLGRITQIIGPVLDVAFP-PGKMPNIYNALVVKGRDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTG 91 (494)
T ss_pred cccceEEEEEEccEEEEEec-CCCcCCcCCEEEEccCCCCCccceEEEEEEEEeCCCeEEEEeccCccCCCCCCEEEeCC
Confidence 45679999999999999994 5667 9999994 2 2 5889999999 999999999999999999999999
Q ss_pred CccccccCccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCC
Q psy2894 93 RILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQ 172 (515)
Q Consensus 93 ~~~~vpvg~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g 172 (515)
++++||||++|||||+|++|+|||+++++...+++|++..+|++++|.++++||+||||+||+|+|||||||+||||++|
T Consensus 92 ~~~~vpvg~~lLGRVid~~G~piDg~~~~~~~~~~pi~~~~p~~~~R~~i~e~L~TGIraID~l~pigkGQR~gIfgg~G 171 (494)
T CHL00060 92 APLSVPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAG 171 (494)
T ss_pred CcceeecchhhcCCEEeecCcccCCCCCCCCCccccccCCCcCchhcccccceeecCceeeeccCCcccCCEEeeecCCC
Confidence 99999999999999999999999999888777788999999999999999999999999999999999999999999999
Q ss_pred CCccHHHHHHHHHhcCC-CeEEEEEEecCChHHHHHHHHHHhhcCC-------CCcEEEEEeCCCCCHHhhHHHHhhhhh
Q psy2894 173 TGKSSIAIDIIINQKNK-NVTCIYVAIGQKISSIKKTANLLEKYGA-------MPYTIIVAATASDSASMQFISAYSGCT 244 (515)
Q Consensus 173 ~GKt~l~~~~i~~~~~~-~~~~V~~~iGer~~ev~~~~~~l~~~~~-------~~~t~vv~~t~~~~~~~r~~a~~~a~~ 244 (515)
+|||+|+.+++.|++.. +.+|||++||||+|||++|++++.+.++ ++||++|++|+|+||.+|+++||+|+|
T Consensus 172 vGKs~L~~~~~~~~~~~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~~~R~~a~~~A~t 251 (494)
T CHL00060 172 VGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLTALT 251 (494)
T ss_pred CChhHHHHHHHHHHHHhcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCCHHHHHHHHHHHHH
Confidence 99999976666675533 4569999999999999999999998665 458899999999999999999999999
Q ss_pred hHHHHHHcCC-cEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCc
Q psy2894 245 IGEYFRDHGK-DALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGS 323 (515)
Q Consensus 245 iAE~frd~G~-~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GS 323 (515)
+||||||+|+ ||||++||+||||+|+||||+++||||+++|||||+|+.||+|+||||+. .+||
T Consensus 252 iAEyfrd~g~~~VLll~DslTR~A~A~REIsl~~gepP~~~GYPpsvfs~l~~LlERaG~~---------------~~GS 316 (494)
T CHL00060 252 MAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITST---------------KEGS 316 (494)
T ss_pred HHHHHHHcCCCCEEEEcccchHHHHHHHHHHHhcCCCCCCCCcCCCHHHHhHHHHHhccCC---------------CCCC
Confidence 9999999986 99999999999999999999999999999999999999999999999985 3799
Q ss_pred eeeeeEEeecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCcccc-ccccchHHHHHHHHHHHHHHHhhHH
Q psy2894 324 LTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRV-GGAAQIKFIKKLSSNIRTDLAQYRE 402 (515)
Q Consensus 324 iT~l~~v~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv-~~~~~~~~~~~~a~~lr~~la~y~e 402 (515)
||+||+|++++||++|||||+++|||||||+|||+||++||||||||+.|+||+ ++....++|+++|.++|++|++|+|
T Consensus 317 ITai~tVl~~gdD~tdPI~d~~~silDGhIvLsr~La~~G~yPAIDvl~SvSR~~~~~~v~~~h~~~a~~~r~~la~y~e 396 (494)
T CHL00060 317 ITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKE 396 (494)
T ss_pred eeEEEEEECCCCCCCCcchHhhhhhcceEEEEcHHHHhCCCCCCcCCccchhhhcccccCCHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999999999999999999999999999999 7777889999999999999999999
Q ss_pred HHHHHHhc--cCCCHHHHHHHHhhHHHhhccccccc----------CCCCHHHHHHHHHHHhcCcccccchhHHH
Q psy2894 403 LAAFSQFS--SDLDLVTRKQLDRGARVTELLKQKQY----------SPLPVSLIAVILFAINKGFLDDIEIKKIL 465 (515)
Q Consensus 403 l~~~~~~g--~~ld~~~~~~l~~~~~i~~~L~Q~~~----------~~~~~~~~~~~l~~~~~G~ld~v~~~~v~ 465 (515)
+++|++++ .+++++++++++++++|++||+|++| +.+++++++..+..+.+|.+|+++.++..
T Consensus 397 ~e~li~~~g~~~ls~~~~~~i~~~~~i~~fL~Q~~f~~e~ft~~~~~~~~~~~~~~~l~~i~~g~~~~~~~~~~~ 471 (494)
T CHL00060 397 LQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDGLPEQAFY 471 (494)
T ss_pred HHHHHHHhCcccCCHHHHHHHHhHHHHHHHhcCCcchhhcccCCCCcccCHHHHHHHHHHHhCCCccCCCHHHhh
Confidence 99998865 48999999999999999999999955 89999999999999999999999887543
No 14
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=100.00 E-value=1e-111 Score=897.49 Aligned_cols=422 Identities=24% Similarity=0.360 Sum_probs=397.8
Q ss_pred ceeEEEEEECcEEEEEecCCC---cccCEEEEc---C-CceEEEEE-EeCCeEEEEEeCCCCCCCCCCEEEEcCCccccc
Q psy2894 27 NQGKVISVFDGICQIYGLSNA---MQGEMLEFP---G-NVFGLALN-LERDSIGAVILGKYEHITEGDIVKCTGRILEVP 98 (515)
Q Consensus 27 ~~G~V~~I~g~iv~v~Gl~~~---~~gElv~~~---~-~~~g~V~~-l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vp 98 (515)
++|+|++|.|.++++.|+ ++ .+||+|.+. + +..|+|++ ++++.+.+++|+++.||+.|++|.+||++++||
T Consensus 2 ~~G~V~~i~g~~v~~~~~-~~~~~~ige~~~i~~~~~~~~~~EVv~~~~~~~~~~~~~~~~~gi~~G~~V~~tg~~~~v~ 80 (463)
T PRK09280 2 NTGKIVQVIGPVVDVEFP-RGELPKIYNALEVEKGDGKKLVLEVAQHLGDGVVRTIAMGSTDGLVRGMEVIDTGAPISVP 80 (463)
T ss_pred CccEEEEEEccEEEEEeC-CCCCccccCEEEEEeCCCCeEEEEeeEEecCCeEEEEEecCccCCCCCCEEEeCCCceEEE
Confidence 469999999999999995 44 999999992 2 37899998 999999999999999999999999999999999
Q ss_pred cCccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCccHH
Q psy2894 99 IGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSI 178 (515)
Q Consensus 99 vg~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GKt~l 178 (515)
||++|||||+|++|+|||+.+++...++||++.++|++++|.++++||.||||+||+|+|||||||+||||++|+|||+|
T Consensus 81 vg~~lLGRViD~~G~pld~~~~~~~~~~~pi~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGQR~gIfa~~GvGKt~L 160 (463)
T PRK09280 81 VGKATLGRIFNVLGEPIDEKGPIGAEERWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVL 160 (463)
T ss_pred cChhhcCCEEeeeccccCCCCCcCccceecccCCCCChHHhCCccceeccCCeeecccCCcccCCEEEeecCCCCChhHH
Confidence 99999999999999999999888777789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc-CCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHH-cCCcE
Q psy2894 179 AIDIIINQK-NKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRD-HGKDA 256 (515)
Q Consensus 179 ~~~~i~~~~-~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd-~G~~V 256 (515)
+..++.|++ +.+.+|||++||||++||++|++++.+.++|+||++|++|+|+||.+|+++||+|+|+|||||| +|+||
T Consensus 161 l~~i~~~~~~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~~V 240 (463)
T PRK09280 161 IQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALTGLTMAEYFRDVEGQDV 240 (463)
T ss_pred HHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCce
Confidence 544444442 3345689999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred EEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEeecCCC
Q psy2894 257 LVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGD 336 (515)
Q Consensus 257 lli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~~~~D 336 (515)
|+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+. .+||||+||+|++++||
T Consensus 241 Lll~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~L~ERag~~---------------~~GSITai~tVl~~gdD 305 (463)
T PRK09280 241 LLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITST---------------KKGSITSVQAVYVPADD 305 (463)
T ss_pred EEEecchHHHHHHHHHHHHhcCCCCcccCcCchHHHHHHHHHHHhcCC---------------CCCceeEEEEEECcCCC
Confidence 999999999999999999999999999999999999999999999973 38999999999999999
Q ss_pred CCCcccccccccCCeEEEecchhhcCCCcCccccCCCcccccc-ccchHHHHHHHHHHHHHHHhhHHHHHHHHhc--cCC
Q psy2894 337 ISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGG-AAQIKFIKKLSSNIRTDLAQYRELAAFSQFS--SDL 413 (515)
Q Consensus 337 ~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~-~~~~~~~~~~a~~lr~~la~y~el~~~~~~g--~~l 413 (515)
++|||||+++|||||||+|||+||++||||||||+.|+||+|+ ..+.++|++++.++|++|++|+|++++++++ .++
T Consensus 306 ~~dPI~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~~~~~~~~~~a~~~r~~la~y~e~e~li~i~gy~~~ 385 (463)
T PRK09280 306 LTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRILDPLIVGEEHYDVAREVQQILQRYKELQDIIAILGMDEL 385 (463)
T ss_pred CCCcchHhhhhhcceEEEEcHHHHhCCCCCccCCccccccccccccCCHHHHHHHHHHHHHHHHhHHHHHHHHhhCCccC
Confidence 9999999999999999999999999999999999999999994 5567999999999999999999999999865 478
Q ss_pred CHHHHHHHHhhHHHhhcccccc----------cCCCCHHHHHHHHHHHhcCcccccchhHH
Q psy2894 414 DLVTRKQLDRGARVTELLKQKQ----------YSPLPVSLIAVILFAINKGFLDDIEIKKI 464 (515)
Q Consensus 414 d~~~~~~l~~~~~i~~~L~Q~~----------~~~~~~~~~~~~l~~~~~G~ld~v~~~~v 464 (515)
++.++++++++++|++||+|++ .+++++++++..|..+..|-+|++|.++.
T Consensus 386 sd~~d~ai~~~~~i~~fL~Q~~~~~~~ft~~~~~~~~~~~~~~~l~~i~~g~~~~~~~~~~ 446 (463)
T PRK09280 386 SEEDKLTVARARKIQRFLSQPFFVAEQFTGSPGKYVPLKDTIRGFKEILEGEYDHLPEQAF 446 (463)
T ss_pred CHHHHHHHHhhHHHHHhccCCcchhhcccCCCCcccCHHHHHHHHHHHhCCCccCCCHHHH
Confidence 8889999999999999999999 89999999999999999999999998764
No 15
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=3.3e-111 Score=887.49 Aligned_cols=430 Identities=24% Similarity=0.375 Sum_probs=405.5
Q ss_pred HHHHHHHHHHHHcccCccCccceeEEEEEECcEEEEEecCCCcccCEEEEc---CCceEEEEEEeCCeEEEEEeCCCCCC
Q psy2894 6 SEISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFP---GNVFGLALNLERDSIGAVILGKYEHI 82 (515)
Q Consensus 6 ~~~~~~l~~~i~~~~~~~~~~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~---~~~~g~V~~l~~~~v~~~~~~~~~gi 82 (515)
..|.+.|++.-+... ....+.+|+|++|.|.++++.|+ .+++||+|.++ ++..|||++++++.+.+++|+++.||
T Consensus 5 ~~~~~~~~~~~~~~~-~~~~~~~G~v~~v~g~~i~~~g~-~~~ige~~~i~~~~~~~~~EVv~~~~~~~~l~~~~~~~gi 82 (444)
T PRK08972 5 HQLLNRLKQYKVKVP-PFRAVASGKLVRVVGLTLEATGC-RAPVGSLCSIETMAGELEAEVVGFDGDLLYLMPIEELRGV 82 (444)
T ss_pred HHHHHHHHHHhhccC-CCCcceeeEEEEEEcCEEEEeeC-CCCCCCEEEEecCCCcEEEEEEEecCCEEEEEECCCcCCC
Confidence 356666665544444 34568889999999999999995 69999999994 24789999999999999999999999
Q ss_pred CCCCEEEEcCCccccccCccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCC
Q psy2894 83 TEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKG 162 (515)
Q Consensus 83 ~~G~~V~~tg~~~~vpvg~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrG 162 (515)
+.|++|.+||++++||||++|||||+|++|+|||+++++...+++|++.++|+|++|.++++||+|||++||.++||++|
T Consensus 83 ~~g~~V~~tg~~~~v~vg~~llGRVid~~G~plD~~~~~~~~~~~~i~~~~~~p~~R~~i~e~l~TGi~aID~ll~i~~G 162 (444)
T PRK08972 83 LPGARVTPLGEQSGLPVGMSLLGRVIDGVGNPLDGLGPIYTDQRASRHSPPINPLSRRPITEPLDVGVRAINAMLTVGKG 162 (444)
T ss_pred CCCCEEEECCCccEEEcChhhcCCeECCCCCCcCCCCCCCCCccccccCCCCChhhcCCCCCcccccceeecceEEEcCC
Confidence 99999999999999999999999999999999999998877778999999999999999999999999999999999999
Q ss_pred cceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhh
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSG 242 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a 242 (515)
||++|||++|+||||| +.+|+++...+++ |+++||||++||++|++++.+.+.|+||++|++|+|+||.+|+++||+|
T Consensus 163 qrigI~G~sG~GKSTL-L~~I~~~~~~dv~-Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~A 240 (444)
T PRK08972 163 QRMGLFAGSGVGKSVL-LGMMTRGTTADVI-VVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCETA 240 (444)
T ss_pred CEEEEECCCCCChhHH-HHHhccCCCCCEE-EEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHHHH
Confidence 9999999999999999 6999988888875 5699999999999999998888899999999999999999999999999
Q ss_pred hhhHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCC
Q psy2894 243 CTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTG 322 (515)
Q Consensus 243 ~~iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~G 322 (515)
+|+||||||+|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+.. . ++|
T Consensus 241 ~tiAEyfrd~G~~VLl~~DslTR~A~A~REIsl~~gepP~~~GYPpsvfs~l~~L~ERAg~~~------------~-~~G 307 (444)
T PRK08972 241 TTIAEYFRDQGLNVLLLMDSLTRYAQAQREIALAVGEPPATKGYPPSVFAKLPALVERAGNGG------------P-GQG 307 (444)
T ss_pred HHHHHHHHHcCCCEEEEEcChHHHHHHHHHHHHhcCCCCccccCCchHHHHhHHHHHHhcCCC------------C-CCc
Confidence 999999999999999999999999999999999999999999999999999999999999862 2 279
Q ss_pred ceeeeeEEeecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHHHhhHH
Q psy2894 323 SLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRE 402 (515)
Q Consensus 323 SiT~l~~v~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~la~y~e 402 (515)
|||+||+|++++||++|||||+++|||||||+|||+||++||||||||+.|+||+|+.++.++|+++|.++|++|++|++
T Consensus 308 SITai~tVl~~gdD~~dpI~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~i~~~~h~~~a~~~r~~ls~y~~ 387 (444)
T PRK08972 308 SITAFYTVLTEGDDLQDPIADASRAILDGHIVLSRELADSGHYPAIDIEASISRVMPMVISEEHLEAMRRVKQVYSLYQQ 387 (444)
T ss_pred eeeeEEEEEEeCCCCCcchHHhhhhhcceEEEEcHHHHhCCCCCeeCCccccccCchhcCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc---cCCCHHHHHHHHhhHHHhhcccccccCCCCHHHHHHHHHHHh
Q psy2894 403 LAAFSQFS---SDLDLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAIN 452 (515)
Q Consensus 403 l~~~~~~g---~~ld~~~~~~l~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~~ 452 (515)
+++++++| .+.|++++++++++++|++||+|+.+++.++++++..|..+.
T Consensus 388 ~e~li~~g~y~~g~d~~~d~ai~~~~~i~~fl~Q~~~~~~~~~~~~~~l~~~~ 440 (444)
T PRK08972 388 NRDLISIGAYKQGSDPRIDNAIRLQPAMNAFLQQTMKEAVPYDMSVNMLKQLA 440 (444)
T ss_pred HHHHHHHhCccCCCCHHHHHHHHhhHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 99999987 599999999999999999999999999999999999998664
No 16
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=100.00 E-value=2.3e-111 Score=892.22 Aligned_cols=422 Identities=25% Similarity=0.368 Sum_probs=398.5
Q ss_pred eeEEEEEECcEEEEEecCCCcccCEE---EE-c-CC--ceEEEEE-EeCCeEEEEEeCCCCCCCCCCEEEEcCCcccccc
Q psy2894 28 QGKVISVFDGICQIYGLSNAMQGEML---EF-P-GN--VFGLALN-LERDSIGAVILGKYEHITEGDIVKCTGRILEVPI 99 (515)
Q Consensus 28 ~G~V~~I~g~iv~v~Gl~~~~~gElv---~~-~-~~--~~g~V~~-l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpv 99 (515)
+|+|++|.|.++++.| +.+.+|++| .+ . ++ ..++|++ ++++.+.+++|+++.||+.|++|.+|+++++|||
T Consensus 2 ~G~v~~v~g~~ie~~~-~~~~ig~~~~~l~i~~~~~~~~~~eVv~~~~~~~v~l~~l~~~~gi~~G~~V~~t~~~~~i~v 80 (461)
T TIGR01039 2 KGKVVQVIGPVVDVEF-EQGELPRIYNALKVQNRAESELTLEVAQHLGDDTVRTIAMGSTDGLVRGLEVIDTGAPISVPV 80 (461)
T ss_pred ccEEEEEEeeEEEEEE-CCCCCcchheEEEEecCCCceEEEEeeeeeCCCeEEEEEccCcccCCCCCEEEeCCCceEEEc
Confidence 5999999999999999 578999999 88 3 33 7889999 9999999999999999999999999999999999
Q ss_pred CccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCccHHH
Q psy2894 100 GPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIA 179 (515)
Q Consensus 100 g~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GKt~l~ 179 (515)
|++|||||+|++|+|||+++++....+||++..+|++++|.++++||+||||+||+|+|||||||+||||++|+|||+|+
T Consensus 81 g~~lLGRViD~~G~pid~~~~~~~~~~~pi~~~~p~~~~R~~~~e~l~TGiraID~l~pig~GQr~~If~~~G~GKt~L~ 160 (461)
T TIGR01039 81 GKETLGRIFNVLGEPIDEKGPIPAKERWPIHRKAPSFEEQSTKVEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLI 160 (461)
T ss_pred ChhhcCCEEccCCcccCCCCCCCCCcccccccCCCChhHcCCcccccccCceeecccCCcccCCEEEeecCCCCChHHHH
Confidence 99999999999999999998877767899999999999999999999999999999999999999999999999999996
Q ss_pred HHHHHHhc-CCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHH-cCCcEE
Q psy2894 180 IDIIINQK-NKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRD-HGKDAL 257 (515)
Q Consensus 180 ~~~i~~~~-~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd-~G~~Vl 257 (515)
..++.|++ +.+.+|||++||||+|||.||++++.+.++|+||++|++|+|+||.+|+++||+|+|+|||||| +|+|||
T Consensus 161 ~~~~~~~~~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~tiAEyfrd~~G~~VL 240 (461)
T TIGR01039 161 QELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVALTGLTMAEYFRDEQGQDVL 240 (461)
T ss_pred HHHHHHHHhcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeeE
Confidence 44444442 3345689999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred EEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEeecCCCC
Q psy2894 258 VVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDI 337 (515)
Q Consensus 258 li~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~~~~D~ 337 (515)
+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+. .+||||+||+|++++||+
T Consensus 241 ll~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~L~ERag~~---------------~~GSITai~tVl~~gdD~ 305 (461)
T TIGR01039 241 LFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGELQERITST---------------KTGSITSVQAVYVPADDL 305 (461)
T ss_pred EEecchhHHHHHHHHHHHhcCCCCCCCCcCCcHHHHHHHHHHhcCCC---------------CCCceeEEEEEEccCCCC
Confidence 99999999999999999999999999999999999999999999973 389999999999999999
Q ss_pred CCcccccccccCCeEEEecchhhcCCCcCccccCCCccccc-cccchHHHHHHHHHHHHHHHhhHHHHHHHHhc--cCCC
Q psy2894 338 SAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVG-GAAQIKFIKKLSSNIRTDLAQYRELAAFSQFS--SDLD 414 (515)
Q Consensus 338 s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~-~~~~~~~~~~~a~~lr~~la~y~el~~~~~~g--~~ld 414 (515)
+|||||+++|||||||+|||+||++||||||||+.|+||+| +..+.+.|+++|.++|.+|++|+|++++++++ .+++
T Consensus 306 ~dPi~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~~~~~~h~~~a~~~r~~la~y~e~~~li~i~g~~~ls 385 (461)
T TIGR01039 306 TDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDSTSRLLDPSVVGEEHYDVARGVQQILQRYKELQDIIAILGMDELS 385 (461)
T ss_pred CCccHHHHHHhcceEEEECHHHHhCCCCCCcCCccccccccCCccCCHHHHHHHHHHHHHHHhhhHHHHHHHHhCCccCC
Confidence 99999999999999999999999999999999999999999 66778999999999999999999999999875 4788
Q ss_pred HHHHHHHHhhHHHhhcccccc----------cCCCCHHHHHHHHHHHhcCcccccchhHHH
Q psy2894 415 LVTRKQLDRGARVTELLKQKQ----------YSPLPVSLIAVILFAINKGFLDDIEIKKIL 465 (515)
Q Consensus 415 ~~~~~~l~~~~~i~~~L~Q~~----------~~~~~~~~~~~~l~~~~~G~ld~v~~~~v~ 465 (515)
+.++++++++++|++||+|++ .+++++++++..|.++..|-+|++|.++..
T Consensus 386 d~~~~~l~~~~~i~~fL~Q~~~~~~~~t~~~~~~~~~~~~~~~l~~i~~g~~~~~~~~~~~ 446 (461)
T TIGR01039 386 EEDKLTVERARRIQRFLSQPFFVAEVFTGQPGKYVPLKDTIRGFKEILEGKYDHLPEQAFY 446 (461)
T ss_pred HHHHHHHHhHHHHHHHhCCCCchhccccCCCCcccCHHHHHHHHHHHhCCCccCCCHHHHh
Confidence 889999999999999999999 899999999999999999999999987643
No 17
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=2.2e-111 Score=889.70 Aligned_cols=430 Identities=24% Similarity=0.308 Sum_probs=389.9
Q ss_pred ceeEEEEEECcEEEEEecCCCcccCEEEE--cCC--ceEEEEEEeCCeEEEEEeCCCCCCCC-CCEEEEcCCccccccCc
Q psy2894 27 NQGKVISVFDGICQIYGLSNAMQGEMLEF--PGN--VFGLALNLERDSIGAVILGKYEHITE-GDIVKCTGRILEVPIGP 101 (515)
Q Consensus 27 ~~G~V~~I~g~iv~v~Gl~~~~~gElv~~--~~~--~~g~V~~l~~~~v~~~~~~~~~gi~~-G~~V~~tg~~~~vpvg~ 101 (515)
+|++|++|.|++++++|++++++||+|+| .++ ..|+|++++++.+.+++|++++||+. |+.|.+|+++++||||+
T Consensus 1 ~y~~v~~i~G~~i~~~g~~~~~~Ge~~~i~~~~~~~~~geVi~~~~~~~~l~~~~~~~gi~~~g~~V~~t~~~~~v~vg~ 80 (466)
T TIGR01040 1 EYRTVSGVNGPLVILDNVKFPRFAEIVNLTLPDGTVRSGQVLEVSGNKAVVQVFEGTSGIDAKKTTCEFTGDILRTPVSE 80 (466)
T ss_pred CCccceEEEccEEEEECCCCCCcCCEEEEEeCCCCEEEEEEEEEeCCeEEEEEcCCCCCcccCCCEEEECCCccEEEcCc
Confidence 47899999999999999889999999999 444 47999999999999999999999997 99999999999999999
Q ss_pred cccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCccHHHHH
Q psy2894 102 ELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAID 181 (515)
Q Consensus 102 ~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GKt~l~~~ 181 (515)
+|||||+|++|+|||+++++....++|++.++|+|++|.++++||+||||+||+|+|||||||+||||++|+|||+| +.
T Consensus 81 ~lLGRVid~~G~piD~~~~~~~~~~~~i~~~~~~~~~R~~i~e~l~TGI~aID~l~~ig~GQRigIfagsGvGKs~L-~~ 159 (466)
T TIGR01040 81 DMLGRVFNGSGKPIDKGPPVLAEDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEI-AA 159 (466)
T ss_pred ccccCEECccccccCCCCCCCCCceeeccCCCCChhHcCCCCCeeecCcEEEeccCccccCCeeeeecCCCCCHHHH-HH
Confidence 99999999999999999888777778999999999999999999999999999999999999999999999999999 58
Q ss_pred HHHHhcC--------------CCeEEEEEEecCChHHHHHHHH-HHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhH
Q psy2894 182 IIINQKN--------------KNVTCIYVAIGQKISSIKKTAN-LLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIG 246 (515)
Q Consensus 182 ~i~~~~~--------------~~~~~V~~~iGer~~ev~~~~~-~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iA 246 (515)
+|++|++ .+++|||++|||| +|+.+|++ +|.++|+|+||++|++|+|+||.+|+++||+|||+|
T Consensus 160 ~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGer-re~~efi~~~l~~~g~l~rtvvv~atsd~p~~~R~~a~~~a~tiA 238 (466)
T TIGR01040 160 QICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVN-METARFFKQDFEENGSMERVCLFLNLANDPTIERIITPRLALTTA 238 (466)
T ss_pred HHHHhhccccccccccccccCCceEEEEEEeeee-hHHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHHHhhhHHHH
Confidence 8998865 3457999999999 77777666 688889999999999999999999999999999999
Q ss_pred HHHH-HcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCcee
Q psy2894 247 EYFR-DHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLT 325 (515)
Q Consensus 247 E~fr-d~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT 325 (515)
|||| ++|+|||+++||+||||+|+||||+++||||+++|||||+|+.||+|+||||++.. + +||||
T Consensus 239 Eyfr~~~G~~VLl~~DslTr~A~A~REisl~~gepP~~~GYP~svfs~l~~L~ERaG~~~~------------~-~GSIT 305 (466)
T TIGR01040 239 EYLAYQCEKHVLVILTDMSSYADALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEG------------R-NGSIT 305 (466)
T ss_pred HHHHHhcCCcEEEeccChHHHHHHHHHHHHhcCCCCCCcCcCchHHHHHHHHhhccccCCC------------C-CcceE
Confidence 9999 69999999999999999999999999999999999999999999999999999721 2 79999
Q ss_pred eeeEEeecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccch-----HHHHHHHHHHHHHHHhh
Q psy2894 326 AIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQI-----KFIKKLSSNIRTDLAQY 400 (515)
Q Consensus 326 ~l~~v~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~-----~~~~~~a~~lr~~la~y 400 (515)
+||+|++++||++|||||+++|||||||||||+||++||||||||+.|+||+|+.++. ++|++++.++...|+++
T Consensus 306 ai~tV~~~~dD~~~pI~d~~~sIlDGhIvLsr~La~~g~yPAIDvl~SvSRl~~~v~~~~~~~~~h~~~a~~l~~~y~~~ 385 (466)
T TIGR01040 306 QIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYACYAIG 385 (466)
T ss_pred EEEEEECCCCCCCCcchhhhhhhcceEEEECHHHHhCCCCCccCCccchhhccccccccCcCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999887 79999998854444444
Q ss_pred HHHHHHHHh-cc-CCCHHHHHHHHhhHHH-hhcccccccCCCCHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHH
Q psy2894 401 RELAAFSQF-SS-DLDLVTRKQLDRGARV-TELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFM 475 (515)
Q Consensus 401 ~el~~~~~~-g~-~ld~~~~~~l~~~~~i-~~~L~Q~~~~~~~~~~~~~~l~~~~~G~ld~v~~~~v~~f~~~l~~~l 475 (515)
+++.++... |+ .+.+++...+.+++.| ++||+|+.+++.++++++..-| ++|+.+|.+.+++..+++++..
T Consensus 386 ~~L~~ig~y~G~d~l~d~a~~~l~~~~~i~~~FL~Q~~~~~~~~~~~l~~~w----~ll~~~~~~~~~r~~~~~~~~~ 459 (466)
T TIGR01040 386 KDVQAMKAVVGEEALSSEDLLYLEFLDKFEKNFIAQGPYENRTIFESLDIAW----QLLRIFPKEMLKRIPAKILEEF 459 (466)
T ss_pred HHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHhccCcCCCcCHHHHHHHHH----HHHHhCCHHHhccCCHHHHHHh
Confidence 444444332 32 6777788888899999 6799999999999998877777 6777888888877777777654
No 18
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=100.00 E-value=5.7e-111 Score=894.34 Aligned_cols=421 Identities=23% Similarity=0.348 Sum_probs=398.9
Q ss_pred eeEEEEEECcEEEEEecCC--CcccCEEEEcC---CceEEEEEE-eCCeEEEEEeCCCCCCCCCCEEEEcCCccccccCc
Q psy2894 28 QGKVISVFDGICQIYGLSN--AMQGEMLEFPG---NVFGLALNL-ERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGP 101 (515)
Q Consensus 28 ~G~V~~I~g~iv~v~Gl~~--~~~gElv~~~~---~~~g~V~~l-~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvg~ 101 (515)
.|+|++|.|++++++|+.+ +++||+|.+.+ ...++|+++ +++.+.+++|+++.||+.|++|..||++++||||+
T Consensus 3 ~G~V~~i~g~vi~v~g~~~~~~~ige~~~i~~~~~~~~~eVv~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg~ 82 (461)
T PRK12597 3 IGRIIKIRGDVVDVEFEEGALPPINQALTVHDDGGPTLLEVKQHLDETTVRAIALGSTSGLARGDEVRNTGGPIEVPVGE 82 (461)
T ss_pred ccEEEEEECcEEEEEECCCCCcCccCEEEEecCCCcEEEEEEEEcCCCeEEEEEecCccCCCCCCEEEeCCCceEEEcCh
Confidence 5999999999999999766 99999999953 367999999 99999999999999999999999999999999999
Q ss_pred cccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCccHHHHH
Q psy2894 102 ELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAID 181 (515)
Q Consensus 102 ~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GKt~l~~~ 181 (515)
+|||||+|++|+|||+.+++....++|++..+|++++|.++++||+||||+||+|+|||||||+||||++|+|||+|+ .
T Consensus 83 ~llGRVid~~G~plD~~~~~~~~~~~~i~~~~p~~~~R~~~~e~l~TGir~ID~l~pigkGQR~gIfa~~G~GKt~Ll-~ 161 (461)
T PRK12597 83 AVLGRLLDVLGEPLDGGPPLPAEERRPIHSTIPPLAEQDTSTEILETGIKVIDLLCPIAKGGKTGLFGGAGVGKTVLM-M 161 (461)
T ss_pred hhcCCEEeeccccccCCCCCCCcceeeccCCCcChhhcCCcCcceecCCeeecccCccccCCEEEeecCCCCChhHHH-H
Confidence 999999999999999998887777899999999999999999999999999999999999999999999999999995 5
Q ss_pred HHHHhcC--CCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHc-CCcEEE
Q psy2894 182 IIINQKN--KNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDH-GKDALV 258 (515)
Q Consensus 182 ~i~~~~~--~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~-G~~Vll 258 (515)
+|+++.. ...+|||++||||+|||.+|++++.+.++|+||++|++|+|+||.+|+++||+|+|+||||||+ |+|||+
T Consensus 162 ~~~~~~~~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~~a~tiAEyfrd~~G~~VLl 241 (461)
T PRK12597 162 ELIFNISKQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLTGLTIAEYLRDEEKEDVLL 241 (461)
T ss_pred HHHHHHHhhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHHHHHHHHHHHHHhcCCceEE
Confidence 5555432 2345899999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred EEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEeecCCCCC
Q psy2894 259 VYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDIS 338 (515)
Q Consensus 259 i~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~~~~D~s 338 (515)
++||+||||+|+||||+++||||+++||||++|+.+++|+|||++. .+||||+||+|++++||++
T Consensus 242 ~~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~l~ERag~~---------------~~GSIT~i~tVl~~~dD~~ 306 (461)
T PRK12597 242 FIDNIFRFVQAGSEVSGLLGRMPSRVGYQPTLASEVAELQERIAST---------------KNGSITSIQAVYVPADDLT 306 (461)
T ss_pred EeccchHHHHHHHHHHHhcCCCCCcCCcCchhHHHHHHHHHhhcCC---------------CCccccEEEEEEecCCCCC
Confidence 9999999999999999999999999999999999999999999863 3899999999999999999
Q ss_pred CcccccccccCCeEEEecchhhcCCCcCccccCCCccccc-cccchHHHHHHHHHHHHHHHhhHHHHHHHHhc--cCCCH
Q psy2894 339 AFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVG-GAAQIKFIKKLSSNIRTDLAQYRELAAFSQFS--SDLDL 415 (515)
Q Consensus 339 ~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~-~~~~~~~~~~~a~~lr~~la~y~el~~~~~~g--~~ld~ 415 (515)
|||||+++|||||||+|||+||++||||||||+.|+||++ +.+..++|++++.++|++|++|+|++++++++ .++|+
T Consensus 307 dPI~d~~~~ilDG~IvLsr~La~~g~yPAIDvl~S~SR~~~~~i~~~~h~~~a~~~r~~la~y~e~e~li~i~gy~~l~~ 386 (461)
T PRK12597 307 DPAAVAIFSHLDSTVVLSRAQAAKGIYPAIDPLASSSNLLDPLVVGERHYDAAIEVKRILQRYKELEDVIAILGIDELSA 386 (461)
T ss_pred CccHHHHHhhcceEEEEcHHHHhCCCCCccCCccccccccccccCCHHHHHHHHHHHHHHHhhhhHHHHHHHcCCccCCH
Confidence 9999999999999999999999999999999999999999 66778999999999999999999999999965 47999
Q ss_pred HHHHHHHhhHHHhhcccccc----------cCCCCHHHHHHHHHHHhcCcccccchhHH
Q psy2894 416 VTRKQLDRGARVTELLKQKQ----------YSPLPVSLIAVILFAINKGFLDDIEIKKI 464 (515)
Q Consensus 416 ~~~~~l~~~~~i~~~L~Q~~----------~~~~~~~~~~~~l~~~~~G~ld~v~~~~v 464 (515)
+++.+++++++|++||+|++ .+++++++++..++.+..|.+|++|.++.
T Consensus 387 ~~d~~i~~~~~i~~fL~Q~~~~~~~~t~~~~~~~~~~~~~~~l~~i~~g~~~~~~~~~~ 445 (461)
T PRK12597 387 EDKIIVKRARQLQRFLTQPFFVTEAFTGEPGVSVPLEETLDSCERILNGEYDDWSEESF 445 (461)
T ss_pred HHHHHHHhHHHHHHHhCCCcchhhcccCCCCcccCHHHHHHHHHHHhCCCccCCCHHHH
Confidence 99999999999999999999 78999999999999999999999998754
No 19
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=100.00 E-value=8.4e-110 Score=880.99 Aligned_cols=421 Identities=23% Similarity=0.329 Sum_probs=396.0
Q ss_pred eEEEEEECcEEEEEec-CCCcccCEEEEcC--CceEEEEE-EeCCeEEEEEeCCCCCCCCCCEEEEcCCccccccCcccc
Q psy2894 29 GKVISVFDGICQIYGL-SNAMQGEMLEFPG--NVFGLALN-LERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELC 104 (515)
Q Consensus 29 G~V~~I~g~iv~v~Gl-~~~~~gElv~~~~--~~~g~V~~-l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvg~~lL 104 (515)
|+|++|.|+++.|+.- ..+.+++.+.+.+ .+.++|+. ++++.+.+++|+++.||+.|++|..||++++||||++||
T Consensus 1 G~i~~i~g~vvdv~f~~~~p~i~~~l~~~~~~~~~~EVv~~l~~~~v~l~~l~~t~Gi~~G~~V~~tg~~~~VpVg~~lL 80 (449)
T TIGR03305 1 GHVVAVRGSIVDVRFDGELPAIHSVLRAGREGEVVVEVLSQLDAHHVRGIALTPTQGLARGMPVRDSGGPLKAPVGKPTL 80 (449)
T ss_pred CeEEEEEcCEEEEEeCCCCcchhheEEecCCCcEEEeeeeEecCCeEEEEEccCcccCCCCCEEEecCCceEEEcChhhc
Confidence 8999999999999973 2477888888874 47889997 999999999999999999999999999999999999999
Q ss_pred ceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCccHHHHHHHH
Q psy2894 105 GRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIII 184 (515)
Q Consensus 105 GrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GKt~l~~~~i~ 184 (515)
|||+|++|+|||+++++...+++|++.+||++++|.++++||+||||+||+|+|||||||++|||++|+|||+|+.+++.
T Consensus 81 GRVlD~~G~PiD~~~~~~~~~~~~i~~~ap~~~~R~~i~e~L~TGIr~ID~l~pigkGQr~~Ifg~~G~GKt~l~~~~~~ 160 (449)
T TIGR03305 81 SRMFDVFGNTIDRREPPKDVEWRSVHQAPPTLTRRSSKSEVFETGIKAIDVLVPLERGGKAGLFGGAGVGKTVLLTEMIH 160 (449)
T ss_pred CCEEccCccccCCCCCCCCccccchhcCCCCchhcccCCcccccCceeeccccccccCCEEEeecCCCCChhHHHHHHHH
Confidence 99999999999999888777788999999999999999999999999999999999999999999999999999766666
Q ss_pred Hhc-CCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHH-cCCcEEEEEec
Q psy2894 185 NQK-NKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRD-HGKDALVVYDD 262 (515)
Q Consensus 185 ~~~-~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd-~G~~Vlli~Ds 262 (515)
|++ ....+|||++||||++||.+|++++.+.++|+||++|++|+|+||.+|+++||+|+|+|||||| +|+|||+++||
T Consensus 161 ~~~~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ds 240 (449)
T TIGR03305 161 NMVGQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHTALTMAEYFRDDEKQDVLLLIDN 240 (449)
T ss_pred HHHhcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCceEEEecC
Confidence 654 2234689999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEeecCCCCCCccc
Q psy2894 263 LSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVP 342 (515)
Q Consensus 263 ltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~~~~D~s~pI~ 342 (515)
+||||+|+||||+++||||+++||||++|+.|++|+||||+. .+||||+||+|++++||++||||
T Consensus 241 lTR~A~A~REisl~~ge~P~~~GYP~~vfs~l~~L~ERag~~---------------~~GSIT~i~~V~~~~dD~~dPi~ 305 (449)
T TIGR03305 241 IFRFIQAGSEVSGLLGQMPSRLGYQPTLGTELAELEERIATT---------------SDGAITSIQAVYVPADDFTDPAA 305 (449)
T ss_pred hHHHHHHHHHHHHHcCCCCCccCcCchHHHHhHHHHHhhcCC---------------CCcCeeEEEEEEccCCCCCCchh
Confidence 999999999999999999999999999999999999999974 38999999999999999999999
Q ss_pred ccccccCCeEEEecchhhcCCCcCccccCCCcccccc-ccchHHHHHHHHHHHHHHHhhHHHHHHHHh-c-cCCCHHHHH
Q psy2894 343 TNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGG-AAQIKFIKKLSSNIRTDLAQYRELAAFSQF-S-SDLDLVTRK 419 (515)
Q Consensus 343 ~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~-~~~~~~~~~~a~~lr~~la~y~el~~~~~~-g-~~ld~~~~~ 419 (515)
|+++|||||||+|||+||++||||||||+.|+||+|+ ..+.+.|++++.++|+.|++|+|+++++++ | .++++.+++
T Consensus 306 d~~~silDG~IvLsr~La~~g~yPAIDvl~S~SR~~~~~i~~~~h~~~a~~~~~~l~~y~e~~~li~~~g~~~l~~~~~~ 385 (449)
T TIGR03305 306 VHTFSHLSASLVLSRKRASEGLYPAIDPLQSTSKMATPGIVGERHYDLAREVRQTLAQYEELKDIIAMLGLEQLSREDRR 385 (449)
T ss_pred HhhhhhcceEEEEcHHHHhCCCCCccCCCcchhhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCHHHHH
Confidence 9999999999999999999999999999999999995 555699999999999999999999999886 4 489999999
Q ss_pred HHHhhHHHhhcccccccCC----------CCHHHHHHHHHHHhcCcccccchhHH
Q psy2894 420 QLDRGARVTELLKQKQYSP----------LPVSLIAVILFAINKGFLDDIEIKKI 464 (515)
Q Consensus 420 ~l~~~~~i~~~L~Q~~~~~----------~~~~~~~~~l~~~~~G~ld~v~~~~v 464 (515)
+++++++|++||+|++++. +++++++...|.+..|.+|++|.+.+
T Consensus 386 ~i~~~~~i~~fL~Q~~~~~e~~t~~~g~~v~l~~tl~~~~~il~g~~~~~~~~~~ 440 (449)
T TIGR03305 386 VVNRARRLERFLTQPFFTTEQFTGMKGKTVSLEDALDGCERILNDEFQDYPERDL 440 (449)
T ss_pred HHHHHHHHHHHhCCCCcccccccCCCCceeEHHHHHHHHHHHhcCCcccCCHHHh
Confidence 9999999999999999888 89999999999999999999987654
No 20
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=3.6e-109 Score=874.70 Aligned_cols=418 Identities=25% Similarity=0.354 Sum_probs=397.4
Q ss_pred ccCccceeEEEEEECcEEEEEecC-CCcccCEEEEcC--C--ceEEEEEEeCCeEEEEEeCCCCCCCCCCEEEEcCCccc
Q psy2894 22 TTEIYNQGKVISVFDGICQIYGLS-NAMQGEMLEFPG--N--VFGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILE 96 (515)
Q Consensus 22 ~~~~~~~G~V~~I~g~iv~v~Gl~-~~~~gElv~~~~--~--~~g~V~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~ 96 (515)
....+.+|+|++|.|++++|+|+. .+.+||+|++.. + ..|+|++++++.+.+++|+++.|++.|++|.+||++++
T Consensus 12 ~~~~~~~g~v~~i~g~~i~v~g~~~~~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g~~V~~tg~~~~ 91 (442)
T PRK08927 12 IDTLVIYGRVVAVRGLLVEVAGPIHALSVGARIVVETRGGRPVPCEVVGFRGDRALLMPFGPLEGVRRGCRAVIANAAAA 91 (442)
T ss_pred CCcceeeeEEEEEEccEEEEEecCCCCCcCCEEEEEcCCCCEEEEEEEEEcCCeEEEEEccCccCCCCCCEEEeCCCccE
Confidence 356788999999999999999974 799999999953 3 68999999999999999999999999999999999999
Q ss_pred cccCccccceEecccCCcCCCCCCCCcc-cccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCc
Q psy2894 97 VPIGPELCGRVINALGDPIDGKGPIKTK-LTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGK 175 (515)
Q Consensus 97 vpvg~~lLGrViD~lG~pid~~~~~~~~-~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GK 175 (515)
||||++|||||+|++|+|||+++++... .++|++..+|++++|.++++||+||||+||+|+|+++|||++|||++|+||
T Consensus 92 v~vg~~llGRVid~~G~piDg~~~~~~~~~~~~i~~~~p~~~~R~~~~~~l~TGir~ID~l~~i~~Gqri~I~G~sG~GK 171 (442)
T PRK08927 92 VRPSRAWLGRVVNALGEPIDGKGPLPQGPVPYPLRAPPPPAHSRARVGEPLDLGVRALNTFLTCCRGQRMGIFAGSGVGK 171 (442)
T ss_pred EECChhhCCCEEccCCCCccCCCCCCCCcccccccCCCcChHHcCCcccccccceEEEeeeeEEcCCCEEEEECCCCCCH
Confidence 9999999999999999999999887664 578999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCc
Q psy2894 176 SSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKD 255 (515)
Q Consensus 176 t~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~ 255 (515)
|+| +.+|+++...+++ ||++||||++||.+|+++..+...|+||++|++|+|+||.+|+++||+|+|+||||||+|+|
T Consensus 172 TtL-L~~I~~~~~~d~~-v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~~a~tiAEyfrd~G~~ 249 (442)
T PRK08927 172 SVL-LSMLARNADADVS-VIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAYLTLAIAEYFRDQGKD 249 (442)
T ss_pred HHH-HHHHHhccCCCEE-EEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 999 6999999888874 68999999999999998665555699999999999999999999999999999999999999
Q ss_pred EEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEeecCC
Q psy2894 256 ALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAG 335 (515)
Q Consensus 256 Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~~~~ 335 (515)
||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+.. . ++||||+||+|++++|
T Consensus 250 Vll~~DslTr~A~A~REisl~~ge~P~~~Gyp~~~f~~l~~l~ERaG~~~------------~-~~GSIT~i~tVlv~gd 316 (442)
T PRK08927 250 VLCLMDSVTRFAMAQREIGLSAGEPPTTKGYTPTVFAELPRLLERAGPGP------------I-GEGTITGLFTVLVDGD 316 (442)
T ss_pred EEEEEeCcHHHHhhhhHHHHhcCCCCcccCCCcchHHHhhHHHHHhcCCC------------C-CCeeeeeeeeeEccCC
Confidence 99999999999999999999999999999999999999999999999862 2 3899999999999999
Q ss_pred CCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHHHhhHHHHHHHHhcc---C
Q psy2894 336 DISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSS---D 412 (515)
Q Consensus 336 D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~la~y~el~~~~~~g~---~ 412 (515)
|++|||||+++|||||||+|||+||++||||||||+.|+||+|++++.+.|++++..+|++|++|+|+++++++|. +
T Consensus 317 D~~dpi~d~~~~i~Dg~ivLsr~La~~g~~PAIDvl~S~SR~~~~~~~~~~~~~a~~~r~~l~~y~e~edli~lg~y~~g 396 (442)
T PRK08927 317 DHNEPVADAVRGILDGHIVMERAIAERGRYPAINVLKSVSRTMPGCNDPEENPLVRRARQLMATYADMEELIRLGAYRAG 396 (442)
T ss_pred CCCCchhhhhhccccEEEEEcHHHHhCCCCCccCCcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999995 8
Q ss_pred CCHHHHHHHHhhHHHhhcccccccCCCCHHHHHHHHHHHhcC
Q psy2894 413 LDLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAINKG 454 (515)
Q Consensus 413 ld~~~~~~l~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~~~G 454 (515)
.|++++++++++++|++||+|+.++++++++++..||.+..|
T Consensus 397 ~d~~~d~ai~~~~~i~~fL~Q~~~e~~~~~~~~~~l~~l~~~ 438 (442)
T PRK08927 397 SDPEVDEAIRLNPALEAFLRQGKDEATSLAEGYARLAQILGG 438 (442)
T ss_pred CCHHHHHHHHccHHHHHhcCCCCCCCCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999977654
No 21
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1.1e-108 Score=872.78 Aligned_cols=419 Identities=24% Similarity=0.372 Sum_probs=398.9
Q ss_pred cccCccCccceeEEEEEECcEEEEEecCCCcccCEEEEcC-------CceEEEEEEeCCeEEEEEeCCCCCCCCCCEEEE
Q psy2894 18 NFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPG-------NVFGLALNLERDSIGAVILGKYEHITEGDIVKC 90 (515)
Q Consensus 18 ~~~~~~~~~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~~-------~~~g~V~~l~~~~v~~~~~~~~~gi~~G~~V~~ 90 (515)
.++.....+.+|+|++|.|.++++.|+ .+.+||+|.+.+ ...|+|++++++.+.+++|+++.||+.|++|++
T Consensus 18 ~~~~~~~~~~~g~v~~v~g~~~~~~g~-~~~~ge~c~i~~~~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g~~V~~ 96 (451)
T PRK05688 18 AISLPAQPVVEGRLLRMVGLTLEAEGL-RAAVGSRCLVINDDSYHPVQVEAEVMGFSGDKVFLMPVGSVAGIAPGARVVP 96 (451)
T ss_pred HHhcCCccceeeEEEEEEecEEEEecC-CCCCCCEEEEecCCCccccceEEEEEEEcCCEEEEEEccCccCCCCCCEEEE
Confidence 333346678899999999999999995 699999999942 378999999999999999999999999999999
Q ss_pred cCCccccccCccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCcceeeecC
Q psy2894 91 TGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGD 170 (515)
Q Consensus 91 tg~~~~vpvg~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~ 170 (515)
||++++||||++|||||+|++|+|||+++++...+++|++..+|+|++|.++++||+|||++||.|+||++|||++|||+
T Consensus 97 tg~~~~v~vg~~llGRV~d~~G~plD~~~~~~~~~~~~i~~~~~~p~~R~~i~~~l~TGi~aID~l~~I~~GqrigI~G~ 176 (451)
T PRK05688 97 LADTGRLPMGMSMLGRVLDGAGRALDGKGPMKAEDWVPMDGPTINPLNRHPISEPLDVGIRSINGLLTVGRGQRLGLFAG 176 (451)
T ss_pred CCCccEEEecccccCCEEeccCceecCCCCCCccceecccCCCCCHHHcccccCCcccceeeecceEEecCCcEEEEECC
Confidence 99999999999999999999999999998887777789999999999999999999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHH
Q psy2894 171 RQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFR 250 (515)
Q Consensus 171 ~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~fr 250 (515)
+|+|||+| +.+|.++...++ +|+++||+|++|+.+|++.+.+.+.|+||++|++|+|+||.+|+++||+|+|+|||||
T Consensus 177 sG~GKSTL-l~~I~g~~~~dv-~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~~~a~aiAEyfr 254 (451)
T PRK05688 177 TGVGKSVL-LGMMTRFTEADI-IVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYCTRIAEYFR 254 (451)
T ss_pred CCCCHHHH-HHHHhCCCCCCE-EEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999 699988877775 5889999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEE
Q psy2894 251 DHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPII 330 (515)
Q Consensus 251 d~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v 330 (515)
|+|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+.. .+ +||||+||+|
T Consensus 255 d~G~~VLl~~DslTR~A~A~REisl~~gepP~~~GYp~svfs~l~~l~ERag~~~------------~~-~GSITai~tV 321 (451)
T PRK05688 255 DKGKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAE------------PG-GGSITAFYTV 321 (451)
T ss_pred HCCCCEEEEecchhHHHHHHHHHHHhcCCCCcccCCCchHHHHhHHHHHHhcCCC------------CC-CceeeEEEEE
Confidence 9999999999999999999999999999999999999999999999999999861 22 8999999999
Q ss_pred eecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHHHhhHHHHHHHHhc
Q psy2894 331 ETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFS 410 (515)
Q Consensus 331 ~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~la~y~el~~~~~~g 410 (515)
++++||++|||||+++|||||||||||+||++||||||||+.|+||+|++++.++|+++|.++|++|++|+++++++++|
T Consensus 322 l~~gdD~~dpI~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~~~~~~~~~a~~~r~~la~y~~~~dli~~g 401 (451)
T PRK05688 322 LSEGDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPQVVDPEHLRRAQRFKQLWSRYQQSRDLISVG 401 (451)
T ss_pred EecCCCCCCchHHHHHhhccEEEEEcHHHHhCCCCCccCCccccCccchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ---cCCCHHHHHHHHhhHHHhhcccccccCCCCHHHHHHHHHHHh
Q psy2894 411 ---SDLDLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAIN 452 (515)
Q Consensus 411 ---~~ld~~~~~~l~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~~ 452 (515)
.+.|+++++++.++++|++||+|+.+++.++++++..|..+.
T Consensus 402 ~y~~g~d~~~d~ai~~~~~i~~fL~Q~~~e~~~~~~~~~~l~~~~ 446 (451)
T PRK05688 402 AYVAGGDPETDLAIARFPHLVQFLRQGLRENVSLAQSREQLAAIF 446 (451)
T ss_pred CccCCCCHHHHHHHHhhHHHHHHhCCCCCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999999999999999999998663
No 22
>PRK06820 type III secretion system ATPase; Validated
Probab=100.00 E-value=1.5e-108 Score=871.47 Aligned_cols=427 Identities=26% Similarity=0.398 Sum_probs=410.3
Q ss_pred HHHHHHHHHHHHcccCcc-CccceeEEEEEECcEEEEEecCCCcccCEEEEc-CCceEEEEEEeCCeEEEEEeCCCCCCC
Q psy2894 6 SEISTIIQEQIKNFNNTT-EIYNQGKVISVFDGICQIYGLSNAMQGEMLEFP-GNVFGLALNLERDSIGAVILGKYEHIT 83 (515)
Q Consensus 6 ~~~~~~l~~~i~~~~~~~-~~~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~-~~~~g~V~~l~~~~v~~~~~~~~~gi~ 83 (515)
..++..++++++.|+... ..+.+|+|++|.|+++++.+ +++++||+|.++ ++..|+|++++++.+.+++|+++.||+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~G~v~~v~g~~~~~~~-~~~~~ge~~~i~~~~~~~eVv~~~~~~~~l~~~~~~~gi~ 85 (440)
T PRK06820 7 ARLTPRLQQQLTRPSAPPEGLRYRGPIVEIGPTLLRASL-PGVAQGELCRIEPQGMLAEVVSIEQEMALLSPFASSDGLR 85 (440)
T ss_pred HHHHHHHHHHHHhcCCCCCceeEeeEEEEEECcEEEEEE-CCCCcCCEEEEecCCeEEEEEEEeCCeEEEEEccCccCCC
Confidence 356688999999998776 78889999999999999996 789999999995 568999999999999999999999999
Q ss_pred CCCEEEEcCCccccccCccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCc
Q psy2894 84 EGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQ 163 (515)
Q Consensus 84 ~G~~V~~tg~~~~vpvg~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGq 163 (515)
.|++|.+||++++||||++|||||+|++|+|||+++++ ..+++|++..+|+|++|+++++|+.|||++||.|+|+++||
T Consensus 86 ~g~~v~~tg~~~~v~vg~~llGrv~d~~G~pld~~~~~-~~~~~~i~~~~p~p~~R~~~~~~l~TGi~aID~l~~i~~Gq 164 (440)
T PRK06820 86 CGQWVTPLGHMHQVQVGADLAGRILDGLGAPIDGGPPL-TGQWRELDCPPPSPLTRQPIEQMLTTGIRAIDGILSCGEGQ 164 (440)
T ss_pred CCCEEEECCCCcEEEechhhcCCEECccCCccCCCCCC-CcccccccCCCCChhhcCCchhhccCCCceecceEEecCCC
Confidence 99999999999999999999999999999999998876 45677999999999999999999999999999999999999
Q ss_pred ceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGC 243 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~ 243 (515)
|++|||++|+|||+| +.+|+++.+.++ +||++||||++|+.+|++.+...+.++||++|++++|+||.+|+++||+|+
T Consensus 165 ri~I~G~sG~GKStL-l~~I~~~~~~dv-~V~~~iGergrEv~ef~e~~l~~~~~~rtvvv~atsd~p~~~r~~a~~~a~ 242 (440)
T PRK06820 165 RIGIFAAAGVGKSTL-LGMLCADSAADV-MVLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALERLKGLSTAT 242 (440)
T ss_pred EEEEECCCCCChHHH-HHHHhccCCCCE-EEEEEEccChHHHHHHHHHhhccCCceeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 999999999999999 689999988886 588999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCc
Q psy2894 244 TIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGS 323 (515)
Q Consensus 244 ~iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GS 323 (515)
|+||||||+|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+. .+||
T Consensus 243 tiAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~gepP~~~GYP~~vf~~l~~L~ERag~~---------------~~GS 307 (440)
T PRK06820 243 TIAEYFRDRGKKVLLMADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNS---------------DRGS 307 (440)
T ss_pred HHHHHHHHcCCCEEEEccchhHHHHHHHHHHHhcCCCCccccCCccHHHHHHHHHHhhccC---------------CCcc
Confidence 9999999999999999999999999999999999999999999999999999999999984 3899
Q ss_pred eeeeeEEeecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHHHhhHHH
Q psy2894 324 LTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYREL 403 (515)
Q Consensus 324 iT~l~~v~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~la~y~el 403 (515)
||+||+|++++||++|||||+++|||||||+|||+||++||||||||+.|+||+|+.++.++|++++..+|++|++|+|+
T Consensus 308 IT~i~tVl~~gdD~~dpI~d~~~~ilDg~ivLsr~La~~g~yPAIDvl~S~SR~~~~~~~~~~~~~a~~~r~~l~~y~e~ 387 (440)
T PRK06820 308 ITAFYTVLVEGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVSAGQLAMAQKLRRMLACYQEI 387 (440)
T ss_pred eeEEEEEEccCCCCCCcchhhhccccceEEEECHHHHhCCCCCccCCcccccccchhhCCHHHHHHHHHHHHHHHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcc---CCCHHHHHHHHhhHHHhhcccccccCCCCHHHHHHHHHHH
Q psy2894 404 AAFSQFSS---DLDLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAI 451 (515)
Q Consensus 404 ~~~~~~g~---~ld~~~~~~l~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~ 451 (515)
++|+++|+ ++|+++++++.++++|++||+|+.++++++++++..||.+
T Consensus 388 ~~li~~G~y~~g~d~~~d~~i~~~~~i~~fL~Q~~~e~~~~~~~~~~l~~~ 438 (440)
T PRK06820 388 ELLVRVGEYQAGEDLQADEALQRYPAICAFLQQDHSETAHLETTLEHLAQV 438 (440)
T ss_pred HHHHHhhCccCCCCHHHHHHHHhhHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 99999995 8999999999999999999999999999999999999865
No 23
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=2.9e-108 Score=884.51 Aligned_cols=428 Identities=25% Similarity=0.338 Sum_probs=391.1
Q ss_pred eeEEEEEECcEEEEEecCCCcccCEEEEc-CCceEEEEEEeCCeEEEEEeCCCCCCCCCCEEEEcCCccccccCccccce
Q psy2894 28 QGKVISVFDGICQIYGLSNAMQGEMLEFP-GNVFGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGR 106 (515)
Q Consensus 28 ~G~V~~I~g~iv~v~Gl~~~~~gElv~~~-~~~~g~V~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvg~~lLGr 106 (515)
.|+|.+|.|++++++|+.++.+||+|++. +++.|||++++++.+.+++|++++||++|++|.+||++++|++|++||||
T Consensus 1 ~G~I~~V~Gpvv~a~g~~~~~~gE~v~v~~~~l~gEVi~~~~d~a~iqvye~t~Gl~~G~~V~~tg~plsV~lGpglLGr 80 (578)
T TIGR01043 1 KGRIIRVSGPLVVADGMKGAQMYEVVKVGEEGLIGEIIRIEGDKAFIQVYEETSGIKPGEPVVGTGAPLSVELGPGLLGS 80 (578)
T ss_pred CCEEEEEECCEEEEecCCCCCcCCEEEECCCcEEEEEEEEcCCeEEEEECCCCCCCCCCCEEEECCCccEEEcCHHHhcc
Confidence 38999999999999999889999999996 45899999999999999999999999999999999999999999999999
Q ss_pred EecccCCcCCCCC----CC----------Cc-------------------------------------------------
Q psy2894 107 VINALGDPIDGKG----PI----------KT------------------------------------------------- 123 (515)
Q Consensus 107 ViD~lG~pid~~~----~~----------~~------------------------------------------------- 123 (515)
|+|++|+|||+.+ ++ ..
T Consensus 81 V~DgigrPLd~~~~~~g~~i~rg~~~~~l~~~~~w~f~p~~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i~ 160 (578)
T TIGR01043 81 IYDGVQRPLDVLKEKTGDFIARGVDAPGLDRDKKWHFKPTVKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVEIA 160 (578)
T ss_pred eeccCCccccCcccccccccccCccCCCcCcccccccccccccCccccCCceEEEEecccceeeeeecCCCCcceEEEec
Confidence 9999999999863 11 11
Q ss_pred ------------------------ccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCccHHH
Q psy2894 124 ------------------------KLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIA 179 (515)
Q Consensus 124 ------------------------~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GKt~l~ 179 (515)
.++||+.. +|++++|.++++||.||+|+||+|+|||||||++|||++|||||+|
T Consensus 161 ~~g~~~~~~~v~~~~~~g~~~~~~~~~wPvr~-p~p~~~R~~~~~pL~TGiRvID~l~Pi~kGqr~~I~gg~G~GKT~l- 238 (578)
T TIGR01043 161 EEGDYTVEDTIAVVDTDGDEEIKMYQKWPVRI-PRPYKEKLPPEVPLITGQRILDTFFPIAKGGTAAIPGPFGSGKTVT- 238 (578)
T ss_pred cCCCceeeeeEEEEecCCceeeeeeeeccccc-CCCchhcCCCCcchhccchhhhccccccCCCEEEEecCCCCCHHHH-
Confidence 12578877 7889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhh-------cCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHc
Q psy2894 180 IDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEK-------YGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDH 252 (515)
Q Consensus 180 ~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~-------~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~ 252 (515)
+.+++++.++|+ |||++||||++|+++|++++.+ .++|+|||+|+||||+|+++|++++|+|+||||||||+
T Consensus 239 ~~~lak~~~adi-vVyvg~GERG~E~~e~le~f~~l~dp~~g~~~m~RTvlVanTSn~p~~aR~~s~ytg~TiAEYfRD~ 317 (578)
T TIGR01043 239 QHQLAKWSDADI-VVYIGCGERGNEMTDVLEEFPELKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDM 317 (578)
T ss_pred HHHHHhcCCCCE-EEEEEeccChHHHHHHHHHhHhhcccccccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 799999888885 8999999999999999999943 67999999999999999999999999999999999999
Q ss_pred CCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEee
Q psy2894 253 GKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIET 332 (515)
Q Consensus 253 G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~ 332 (515)
|+|||+++||+||||+|+||||+++||||+++||||++|+.+++||||||++.+. ++ .+++||||++|+|++
T Consensus 318 G~~Vllm~DS~sR~AeAlREIs~~lgE~P~~eGYP~yl~SrLa~~yERAG~~~~~------~~--~~r~GSIT~i~aVs~ 389 (578)
T TIGR01043 318 GYDVALMADSTSRWAEAMREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTL------GG--EERVGSVTVIGAVSP 389 (578)
T ss_pred CCCEEEEecChhHHHHHHHHHHHhcCCCCCCCCcCccHHHHHHHHHHhhcccccc------CC--CCCCccEeEEEEEEC
Confidence 9999999999999999999999999999999999999999999999999998542 00 012699999999999
Q ss_pred cCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCcccccccc-------chHHHHHHHHHHHHHHHhhHHHHH
Q psy2894 333 QAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAA-------QIKFIKKLSSNIRTDLAQYRELAA 405 (515)
Q Consensus 333 ~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~-------~~~~~~~~a~~lr~~la~y~el~~ 405 (515)
++||++||||+|+++|+||||+|||+||++||||||||+.|+||+++.+ ..+.|++++.+++.+|++|+|+++
T Consensus 390 ~ggD~sdPVt~~t~~i~dg~i~Ldr~LA~~ghyPAId~l~S~Sr~~~~~~~~~~~~v~~~~~~~~~~~~~lL~~~~el~~ 469 (578)
T TIGR01043 390 PGGDFSEPVTQNTLRIVKVFWALDADLAQRRHFPAINWLQSYSLYVDLVQDWWHENVDPDWREMRDEAMDLLQKESELQE 469 (578)
T ss_pred CCCCCCccHHHHHHHHhCcEEEeCHHHHhcCCCCCcCcccchhhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987 678999999999999999999999
Q ss_pred HHHh-ccC-CCHHHHHHHHhhHHHh-hcccccccCCC----CHHHHHHHHHHHh------cCcc-cccchhHHHH
Q psy2894 406 FSQF-SSD-LDLVTRKQLDRGARVT-ELLKQKQYSPL----PVSLIAVILFAIN------KGFL-DDIEIKKILN 466 (515)
Q Consensus 406 ~~~~-g~~-ld~~~~~~l~~~~~i~-~~L~Q~~~~~~----~~~~~~~~l~~~~------~G~l-d~v~~~~v~~ 466 (515)
|+++ |++ |++.++..+++++.++ .||+|+.|+++ |+++|+..|..+. ...+ .+++++++.+
T Consensus 470 iv~lvG~d~L~~~d~~il~~a~~i~e~FLqQ~~~~~~d~~~~~~k~~~~L~~i~~~~~~~~~~~~~~~~~~~i~~ 544 (578)
T TIGR01043 470 IVQLVGPDALPERQKLILEVARMIREAFLQQNAFDPVDTYCPPQKQYRILRAIMNFYDEAMEALERGVPVEEILK 544 (578)
T ss_pred HHhccCCCCCCHHHHHHHHHhHHHHHhhCCCCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhc
Confidence 9998 865 9999999999999997 59999997777 9999999987653 1222 3455666554
No 24
>PRK09099 type III secretion system ATPase; Provisional
Probab=100.00 E-value=6e-108 Score=867.93 Aligned_cols=412 Identities=28% Similarity=0.438 Sum_probs=396.4
Q ss_pred ccCccceeEEEEEECcEEEEEecCCCcccCEEEEc--CC---ceEEEEEEeCCeEEEEEeCCCCCCCCCCEEEEcCCccc
Q psy2894 22 TTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFP--GN---VFGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILE 96 (515)
Q Consensus 22 ~~~~~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~--~~---~~g~V~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~ 96 (515)
....+.+|+|++|.|++++++|+ .+.+||+|+|. ++ ..|+|++++++.+.+++|+++.||+.|++|.+||++++
T Consensus 19 ~~~~~~~G~V~~v~g~~i~~~g~-~~~~ge~~~i~~~~g~~~~~~eVv~~~~~~~~l~~~~~t~gi~~g~~V~~tg~~~~ 97 (441)
T PRK09099 19 LPAVRRTGKVVEVIGTLLRVSGL-DVTLGELCELRQRDGTLLQRAEVVGFSRDVALLSPFGELGGLSRGTRVIGLGRPLS 97 (441)
T ss_pred CCcceEeeEEEEEECCEEEEecc-CCCCCCEEEEecCCCCeeeEEEEEEEECCEEEEEEccCCcCCCCCCEEEeCCCccE
Confidence 46778899999999999999997 59999999994 33 57999999999999999999999999999999999999
Q ss_pred cccCccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCcc
Q psy2894 97 VPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKS 176 (515)
Q Consensus 97 vpvg~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GKt 176 (515)
||||++|||||+|++|+|||+.+++...+++|++..||+|++|+++++||+||+++||.++|+++|||++|+|++|+|||
T Consensus 98 v~vg~~lLGrV~d~~G~piD~~~~~~~~~~~~i~~~~p~p~~R~~i~e~l~TGi~~ID~l~~i~~Gq~~~I~G~sG~GKT 177 (441)
T PRK09099 98 VPVGPALLGRVIDGLGEPIDGGGPLDCDELVPVIAAPPDPMSRRMVEAPLPTGVRIVDGLMTLGEGQRMGIFAPAGVGKS 177 (441)
T ss_pred EEeccccccCEEcccCCccCCCCCCccccccccccCCCChhhcCCcccccCCCceeccceeeecCCCEEEEECCCCCCHH
Confidence 99999999999999999999998887777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcE
Q psy2894 177 SIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDA 256 (515)
Q Consensus 177 ~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~V 256 (515)
+| +.+|+.+...+. ++|++||||++|+.+|++.+.+.+.|+||++|++|+|+||.+|+++||+|+|+||||||+|+||
T Consensus 178 tL-l~~ia~~~~~d~-~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~~a~tiAEyfrd~G~~V 255 (441)
T PRK09099 178 TL-MGMFARGTQCDV-NVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYVATAIAEYFRDRGLRV 255 (441)
T ss_pred HH-HHHHhCCCCCCe-EEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 99 688988877775 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEeecCCC
Q psy2894 257 LVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGD 336 (515)
Q Consensus 257 lli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~~~~D 336 (515)
|+++||+||||+|+||||+++||||+++||||++|+.|+||+||||.. ++||||+||+|++++||
T Consensus 256 Ll~~DslTr~A~A~REisl~~gepP~~~gyP~~vf~~l~~l~ERag~~---------------~~GSIT~i~tVl~~~dd 320 (441)
T PRK09099 256 LLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAELPRLLERAGMG---------------ETGSITALYTVLAEDES 320 (441)
T ss_pred EEeccchhHHHHHHHHHHHhcCCCCccccCCccHHHHhHHHHHhhcCC---------------CCcchheeEEEEecCCC
Confidence 999999999999999999999999999999999999999999999953 38999999999999999
Q ss_pred CCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHHHhhHHHHHHHHhc---cCC
Q psy2894 337 ISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFS---SDL 413 (515)
Q Consensus 337 ~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~la~y~el~~~~~~g---~~l 413 (515)
++|||||+++|||||||+|||+||++||||||||+.|+||+|+.++.++|++++.++|+.|++|+|+++|+++| .+.
T Consensus 321 ~~dpI~d~~~~i~DG~ivLsr~La~~g~yPAIDvl~S~SR~~~~~~~~~~~~~a~~lr~~la~y~e~e~li~iG~y~~g~ 400 (441)
T PRK09099 321 GSDPIAEEVRGILDGHMILSREIAARNQYPAIDVLGSLSRVMPQVVPREHVQAAGRLRQLLAKHREVETLLQVGEYRAGS 400 (441)
T ss_pred cCCcchhhhheecceEEEEcHHHHhCCCCCccCCccccCccchhcCCHHHHHHHHHHHHHHHhhHHHHHHHHhcCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 589
Q ss_pred CHHHHHHHHhhHHHhhcccccccCCCCHHHHHHHHHHH
Q psy2894 414 DLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAI 451 (515)
Q Consensus 414 d~~~~~~l~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~ 451 (515)
|+.++++++++++|++||+|+.++++++++++..|..+
T Consensus 401 d~~~d~~i~~~~~i~~fL~Q~~~~~~~~~~t~~~l~~~ 438 (441)
T PRK09099 401 DPVADEAIAKIDAIRDFLSQRTDEYSDPDATLAALAEL 438 (441)
T ss_pred ChhHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999998765
No 25
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=6.4e-108 Score=864.22 Aligned_cols=408 Identities=30% Similarity=0.436 Sum_probs=389.2
Q ss_pred eEEEEEECcEEEEEecCCC-cccCEEEEc--CC--ceEEEEEEeCCeEEEEEeCCCCCCCCCCEEEEcCCccccccCccc
Q psy2894 29 GKVISVFDGICQIYGLSNA-MQGEMLEFP--GN--VFGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPEL 103 (515)
Q Consensus 29 G~V~~I~g~iv~v~Gl~~~-~~gElv~~~--~~--~~g~V~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvg~~l 103 (515)
|+|++|.|++++++|+..+ ++||+|+|. ++ ..|+|++++++.+.+++|+++.||+.|++|..||++++||||++|
T Consensus 1 G~v~~v~g~~~~v~g~~~~~~~ge~~~i~~~~~~~~~~eVv~~~~~~v~l~~~~~~~gi~~G~~V~~tg~~~~i~vg~~l 80 (418)
T TIGR03498 1 GRVTAVTGLLIEVRGLSRAVRLGDRCAIRARDGRPVLAEVVGFNGDRVLLMPFEPLEGVGLGCAVFAREGPLAVRPHPSW 80 (418)
T ss_pred CEEEEEECcEEEEEcCCCccCCCCEEEEEcCCCCEEEEEEEEEcCCeEEEEEccCCcCCCCCCEEEECCCccEEEeChhh
Confidence 8999999999999998764 999999996 34 589999999999999999999999999999999999999999999
Q ss_pred cceEecccCCcCCCCCCCCcc-cccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCccHHHHHH
Q psy2894 104 CGRVINALGDPIDGKGPIKTK-LTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDI 182 (515)
Q Consensus 104 LGrViD~lG~pid~~~~~~~~-~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GKt~l~~~~ 182 (515)
||||+|++|+|||+++++... .++|++..||++++|.++++||+||+++||.++|+++|||++|+|++|+|||+| +.+
T Consensus 81 LGRViD~lG~plD~~~~~~~~~~~~~i~~~~p~~~~R~~i~~~l~tGi~aiD~~~~i~~Gq~i~I~G~sG~GKTtL-l~~ 159 (418)
T TIGR03498 81 LGRVINALGEPIDGKGPLPQGERRYPLRASPPPAMSRARVGEPLDTGVRVIDTFLPLCRGQRLGIFAGSGVGKSTL-LSM 159 (418)
T ss_pred cCCEECCCCCccCCCCCCCCCcceechhhcCCChhhccCcccccCCccEEEeeeccccCCcEEEEECCCCCChHHH-HHH
Confidence 999999999999999887655 458999999999999999999999999999999999999999999999999999 688
Q ss_pred HHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEec
Q psy2894 183 IINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDD 262 (515)
Q Consensus 183 i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Ds 262 (515)
|+++...+. .+|+++|||++||++|+++..+.+.|+||++|++|+|+||.+|+++||+|||+||||||+|+|||+++||
T Consensus 160 I~~~~~~~~-gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~a~~iAEyfrd~G~~Vll~~Ds 238 (418)
T TIGR03498 160 LARNTDADV-VVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTATAIAEYFRDQGKDVLLLMDS 238 (418)
T ss_pred HhCCCCCCE-EEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccc
Confidence 888877775 5889999999999999998767777999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEeecCCCCCCccc
Q psy2894 263 LSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVP 342 (515)
Q Consensus 263 ltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~~~~D~s~pI~ 342 (515)
+||||+|+||||+++||||+++||||++|+.|+||+||||+.. .+ +||||+||+|++++||++||||
T Consensus 239 lTr~A~A~REisl~~gepP~~~gyp~~vf~~l~~L~ERag~~~------------~~-~GSIT~~~tVl~~gdd~~dpi~ 305 (418)
T TIGR03498 239 VTRFAMAQREIGLAAGEPPVARGYTPSVFSELPRLLERAGPGA------------EG-KGSITGIFTVLVDGDDHNEPVA 305 (418)
T ss_pred hhHHHHHHHHHHHhcCCCCccccCCchhhhhhhHHHHHhccCC------------CC-CcceeeeEEEeccCCCCCCcch
Confidence 9999999999999999999999999999999999999999852 33 8999999999999999999999
Q ss_pred ccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHHHhhHHHHHHHHhcc---CCCHHHHH
Q psy2894 343 TNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSS---DLDLVTRK 419 (515)
Q Consensus 343 ~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~la~y~el~~~~~~g~---~ld~~~~~ 419 (515)
|+++|||||||+|||+||++||||||||+.|+||+|+.++.+.|+++|.++|++|++|+|+++|+++|. +.|+++++
T Consensus 306 d~~~si~DG~ivLsr~la~~g~~PAIDv~~S~SR~~~~~~~~~~~~~a~~~r~~l~~y~e~~~~~~~g~y~~g~d~~~d~ 385 (418)
T TIGR03498 306 DAVRGILDGHIVLDRAIAERGRYPAINVLASVSRLAPRVWSPEERKLVRRLRALLARYEETEDLIRLGAYRKGSDPELDE 385 (418)
T ss_pred hhhheeeeeEEEECHHHHhCCCCCccCCcccccccchhhcCHHHHHHHHHHHHHHHhhHHHHHHHHhhCCcCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999994 79999999
Q ss_pred HHHhhHHHhhcccccccCCCCHHHHHHHHHHH
Q psy2894 420 QLDRGARVTELLKQKQYSPLPVSLIAVILFAI 451 (515)
Q Consensus 420 ~l~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~ 451 (515)
+++++++|++||+|+.++++++++++..|..+
T Consensus 386 ai~~~~~i~~fl~Q~~~~~~~~~~~~~~l~~~ 417 (418)
T TIGR03498 386 AIRLVPKIYEFLTQGPDEPTSLQDPFADLAAI 417 (418)
T ss_pred HHHhHHHHHHHhCCCCCCCCCHHHHHHHHHhh
Confidence 99999999999999999999999999998754
No 26
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=100.00 E-value=3.2e-107 Score=859.77 Aligned_cols=416 Identities=26% Similarity=0.377 Sum_probs=399.9
Q ss_pred HcccCccCccceeEEEEEECcEEEEEecCCCcccCEEEE-cCCceEEEEEEeCCeEEEEEeCCCCCCCCCCEEEEcCCcc
Q psy2894 17 KNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEF-PGNVFGLALNLERDSIGAVILGKYEHITEGDIVKCTGRIL 95 (515)
Q Consensus 17 ~~~~~~~~~~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~-~~~~~g~V~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~ 95 (515)
-.|.+....+.+|+|++|.|+++++.+ +++++||+|.+ .++..|+|++++++.+.+++|+++.||+.|++|.+||+++
T Consensus 11 ~~~~~~~~~~~~G~v~~v~g~~~~~~~-~~~~~ge~~~i~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g~~V~~tg~~~ 89 (433)
T PRK07594 11 LKYPPPDGYCRWGRIQDVSATLLNAWL-PGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTIGLHCGQQVMALRRRH 89 (433)
T ss_pred cCCCCCCccceeeEEEEEECCEEEEEE-CCcCCCCEEEEecCCeEEEEEEEcCCeEEEEEccCCcCCCCCCEEEeCCCcc
Confidence 467777788899999999999999996 79999999999 4568999999999999999999999999999999999999
Q ss_pred ccccCccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCc
Q psy2894 96 EVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGK 175 (515)
Q Consensus 96 ~vpvg~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GK 175 (515)
+||||++|||||+|++|+|||++++. ...+++++..+|++++|.++++|+.||+++||.++|+++|||++|+|++|+||
T Consensus 90 ~v~vg~~llGrVid~~G~pld~~~~~-~~~~~~i~~~~p~~~~r~~v~~~l~tGi~aID~ll~i~~GqrigI~G~sG~GK 168 (433)
T PRK07594 90 QVPVGEALLGRVIDGFGRPLDGRELP-DVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGK 168 (433)
T ss_pred EEEeChhhccCEEcccCCCcCCCCCC-cccccccccCCCCceeccCHhheeCCCceeeeeeeecCCCCEEEEECCCCCCc
Confidence 99999999999999999999998774 44567999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCc
Q psy2894 176 SSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKD 255 (515)
Q Consensus 176 t~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~ 255 (515)
|+| +.+|.++...+. +||++||||++|+.+|++.+.+.+.++||++|++++|+|+.+|+++||+|+|+||||||+|+|
T Consensus 169 STL-L~~I~~~~~~d~-~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~~~a~tiAEyfrd~G~~ 246 (433)
T PRK07594 169 STL-LAMLCNAPDADS-NVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR 246 (433)
T ss_pred cHH-HHHhcCCCCCCE-EEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 999 699999888886 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEeecCC
Q psy2894 256 ALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAG 335 (515)
Q Consensus 256 Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~~~~ 335 (515)
||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||.. .+||||+||+|++++|
T Consensus 247 VLl~~Dsltr~A~A~REisl~~ge~P~~~Gyp~svf~~l~~l~ERag~~---------------~~GSIT~~~tVl~~gd 311 (433)
T PRK07594 247 VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG---------------EKGSITAFYTVLVEGD 311 (433)
T ss_pred EEEEEeCHHHHHHHHHHHHHhcCCCCCCCCcCchhHHHhHHHHHhhcCC---------------CCcchheeeeeeecCC
Confidence 9999999999999999999999999999999999999999999999952 3899999999999999
Q ss_pred CCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHHHhhHHHHHHHHhcc---C
Q psy2894 336 DISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSS---D 412 (515)
Q Consensus 336 D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~la~y~el~~~~~~g~---~ 412 (515)
|++|||||+++|||||||+|||+||++||||||||+.|+||+|+.++.++|+++|.++|+.|++|+|+|+|+++|+ +
T Consensus 312 D~~dpi~d~~~~ilDG~IvLsr~la~~g~yPAIDvl~S~SR~~~~~~~~~h~~~a~~~r~~la~y~e~e~li~~G~y~~g 391 (433)
T PRK07594 312 DMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALYQEVELLIRIGEYQRG 391 (433)
T ss_pred CCCCchHHHhhhhcceEEEEcHHHHhCCCCCccCCcccccccchhhCCHHHHHHHHHHHHHHHcchHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999996 9
Q ss_pred CCHHHHHHHHhhHHHhhcccccccCCCCHHHHHHHHHHH
Q psy2894 413 LDLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAI 451 (515)
Q Consensus 413 ld~~~~~~l~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~ 451 (515)
.|++++++++++++|++||+|+..+++++++++..|..+
T Consensus 392 ~d~~~d~ai~~~~~i~~fl~Q~~~~~~~~~~~~~~l~~~ 430 (433)
T PRK07594 392 VDTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQI 430 (433)
T ss_pred CCHHHHHHHHhhHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999998765
No 27
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=9.2e-107 Score=855.18 Aligned_cols=404 Identities=27% Similarity=0.415 Sum_probs=389.5
Q ss_pred eEEEEEECcEEEEEecCCCcccCEEEEc--CC--ceEEEEEEeCCeEEEEEeCCCCCCCCCCEEEEcCCccccccCcccc
Q psy2894 29 GKVISVFDGICQIYGLSNAMQGEMLEFP--GN--VFGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELC 104 (515)
Q Consensus 29 G~V~~I~g~iv~v~Gl~~~~~gElv~~~--~~--~~g~V~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvg~~lL 104 (515)
|+|++|.|++++|+|+ ++.+||+|++. ++ ..|+|++++++.+.+++|+++.||+.|+.|.+||++++||||++||
T Consensus 1 G~v~~v~g~~v~v~g~-~~~~ge~~~i~~~~~~~~~~eVv~~~~~~v~l~~~~~t~gl~~G~~V~~tg~~~~v~vg~~ll 79 (411)
T TIGR03496 1 GRVTRVVGLVLEAVGL-RAPVGSRCEIESSDGDPIEAEVVGFRGDRVLLMPLEDVEGLRPGARVFPLEGPLRLPVGDSLL 79 (411)
T ss_pred CEEEEEECcEEEEEeC-CCCcCCEEEEEcCCCCeEEEEEEEecCCEEEEEEccCccCCCCCCEEEECCCccEEEcchhhc
Confidence 7999999999999997 89999999994 44 5899999999999999999999999999999999999999999999
Q ss_pred ceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCccHHHHHHHH
Q psy2894 105 GRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIII 184 (515)
Q Consensus 105 GrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GKt~l~~~~i~ 184 (515)
|||+|++|+|||+.+++....+||++..+|+|++|.++++|+.||+++||.++|+++|||++|+|++|+|||+| +++|+
T Consensus 80 GrVid~~G~pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~~~tGi~~id~l~~i~~Gq~~~I~G~sG~GKTtL-l~~I~ 158 (411)
T TIGR03496 80 GRVIDGLGRPLDGKGPLDAGERVPLYAPPINPLKRAPIDEPLDVGVRAINGLLTVGRGQRMGIFAGSGVGKSTL-LGMMA 158 (411)
T ss_pred CCEECCCCCCcCCCCCCCcccccccccCCCCHHhccCcceEeeeeEEeecceEEEecCcEEEEECCCCCCHHHH-HHHHh
Confidence 99999999999999888777789999999999999999999999999999999999999999999999999999 69999
Q ss_pred HhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechh
Q psy2894 185 NQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLS 264 (515)
Q Consensus 185 ~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dslt 264 (515)
++...++ +||++||||++|+.+|++++.+.++|+||++|++|+|+||.+|+++||+|+|+||||||+|+|||+++||+|
T Consensus 159 ~~~~~~~-~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~~~a~tiAEyfr~~G~~Vll~~Dslt 237 (411)
T TIGR03496 159 RYTEADV-VVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAAFYATAIAEYFRDQGKDVLLLMDSLT 237 (411)
T ss_pred cCCCCCE-EEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeChH
Confidence 8888886 568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEeecCCCCCCccccc
Q psy2894 265 KQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTN 344 (515)
Q Consensus 265 r~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~~~~D~s~pI~~~ 344 (515)
|||+|+||||+++||||+++||||++|+.|++|+||||++. . ++||||+||+|++++||++|||||+
T Consensus 238 r~A~A~REisl~~ge~P~~~gyp~~~f~~l~~l~ERag~~~------------~-~~GSIT~~~tv~~~~dd~~dpi~~~ 304 (411)
T TIGR03496 238 RFAMAQREIALAIGEPPATKGYPPSVFAKLPQLVERAGNGE------------E-GKGSITAFYTVLVEGDDQQDPIADA 304 (411)
T ss_pred HHHHHHHHHHHhcCCCCCccCcCHHHHHHhHHHHHHhcccC------------C-CCcceeEEEEEEccCCCCCCcchhh
Confidence 99999999999999999999999999999999999999973 2 3899999999999999999999999
Q ss_pred ccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHHHhhHHHHHHHHhc---cCCCHHHHHHH
Q psy2894 345 VISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFS---SDLDLVTRKQL 421 (515)
Q Consensus 345 ~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~la~y~el~~~~~~g---~~ld~~~~~~l 421 (515)
++|||||||+|||+||++||||||||+.|+||+++.++.+.|++++.++|++|++|+|+++|+++| .+.|+++++++
T Consensus 305 ~~~i~dg~ivLsr~la~~g~~PAId~~~S~SR~~~~~~~~~~~~~a~~~r~~l~~y~e~~~l~~~g~y~~g~d~~~d~~i 384 (411)
T TIGR03496 305 ARAILDGHIVLSRELAEQGHYPAIDILASISRVMPDVVSPEHRQAARRFKQLLSRYQENRDLISIGAYQAGSDPELDQAI 384 (411)
T ss_pred hcccccEEEEEchhHHhCCCCCccCCCcccccchhhhCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 58999999999
Q ss_pred HhhHHHhhcccccccCCCCHHHHHHHH
Q psy2894 422 DRGARVTELLKQKQYSPLPVSLIAVIL 448 (515)
Q Consensus 422 ~~~~~i~~~L~Q~~~~~~~~~~~~~~l 448 (515)
+++++|++||+|+.++++++++++..|
T Consensus 385 ~~~~~i~~fl~Q~~~~~~~~~~~~~~l 411 (411)
T TIGR03496 385 ALYPRIEAFLQQGMRERASFEESLEAL 411 (411)
T ss_pred HHHHHHHHHhCCCCCCCCCHHHHHhhC
Confidence 999999999999999999999988653
No 28
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=1.7e-106 Score=851.08 Aligned_cols=419 Identities=21% Similarity=0.253 Sum_probs=394.4
Q ss_pred cceeEEEEEECcEEEEEecCCCcccCEEEEc--CC-ceEEEEEEeCCeEEEEEeCCCCCCCCCCEEEEcCCccccccCcc
Q psy2894 26 YNQGKVISVFDGICQIYGLSNAMQGEMLEFP--GN-VFGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPE 102 (515)
Q Consensus 26 ~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~--~~-~~g~V~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvg~~ 102 (515)
..+|+|++|.|++++|++ +++.+||+|++. ++ ..|+|++++++.+.+++|+++.||+.|++|.+||++++||||++
T Consensus 3 ~~~g~v~~i~G~~v~v~~-~~~~~ge~~~i~~~~~~~~geVi~~~~~~v~~~~~~~t~Gl~~g~~V~~tg~~~~vpvg~~ 81 (436)
T PRK02118 3 KIYTKITDITGNVITVEA-EGVGYGELATVERKDGSSLAQVIRLDGDKVTLQVFGGTRGISTGDEVVFLGRPMQVTYSES 81 (436)
T ss_pred ceeEEEEEEECcEEEEEe-CCCCCCCEEEEEcCCCCEEEEEEEEcCCEEEEEEecCCcCCCCCCEEEeCCCceEEEcCcc
Confidence 468999999999999999 789999999995 33 68999999999999999999999999999999999999999999
Q ss_pred ccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCccHHHHHH
Q psy2894 103 LCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDI 182 (515)
Q Consensus 103 lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GKt~l~~~~ 182 (515)
|||||+|++|+|||+++++.. +.+|++.++|+|++|.++++||+||||+||+|+|||||||++|||++|+|||+| +.+
T Consensus 82 lLGRV~d~~G~PiD~~~~~~~-~~~~i~~~~~~p~~R~~~~e~l~TGIkaID~l~pl~rGQkigIF~gaGvgk~~L-~~~ 159 (436)
T PRK02118 82 LLGRRFNGSGKPIDGGPELEG-EPIEIGGPSVNPVKRIVPREMIRTGIPMIDVFNTLVESQKIPIFSVSGEPYNAL-LAR 159 (436)
T ss_pred ccCCEEccCCcccCCCCCCCc-ceeecCCCCCChHHcCCcccccccCcEEeecccccccCCEEEEEeCCCCCHHHH-HHH
Confidence 999999999999999887754 458999999999999999999999999999999999999999999999999999 799
Q ss_pred HHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcC-CcEEEEEe
Q psy2894 183 IINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHG-KDALVVYD 261 (515)
Q Consensus 183 i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G-~~Vlli~D 261 (515)
|++|++.|+ +||++||||.+|+.+|++++++.|+|+||++|++++|+||++|+++||+|+|+||||||+| +|||+++|
T Consensus 160 ia~~~~~~v-~Vfa~iGeR~rE~~ef~~~~~~~~~l~rtvlv~~~adep~~~R~~~~~~AltiAEyfrd~g~~~VLli~D 238 (436)
T PRK02118 160 IALQAEADI-IILGGMGLTFDDYLFFKDTFENAGALDRTVMFIHTASDPPVECLLVPDMALAVAEKFALEGKKKVLVLLT 238 (436)
T ss_pred HHHhhCCCe-EEEEEeccchhHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHhcCCCCEEEecc
Confidence 999999997 6999999999999999999999999999999999999999999999999999999999997 99999999
Q ss_pred chhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEeecCCCCCCcc
Q psy2894 262 DLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFV 341 (515)
Q Consensus 262 sltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~~~~D~s~pI 341 (515)
|+||||+|+||||+++||||+++||||++|+.+++|+||||++ .| +||||++|+|++|+||++|||
T Consensus 239 dlTr~a~A~REIsl~~ge~P~r~GYpp~lfs~L~~l~ERag~~-------------~~-~GSITai~~V~~p~DD~tdPi 304 (436)
T PRK02118 239 DMTNFADALKEISITMDQIPSNRGYPGSLYSDLASRYEKAVDF-------------ED-GGSITIIAVTTMPGDDVTHPV 304 (436)
T ss_pred CchHHHHHHHHHHHhcCCCCCCCCcCCcHHHHHHHHHHhcCCC-------------CC-CeeEEEEEEEEcCCCCcCccH
Confidence 9999999999999999999999999999999999999999986 45 899999999999999999999
Q ss_pred cccccccCCeEEEecchhhcCCCcCccccCCCccccccccch----HHHHHHHHHHHHHHHhhHHHHHHHHhccCCCHHH
Q psy2894 342 PTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQI----KFIKKLSSNIRTDLAQYRELAAFSQFSSDLDLVT 417 (515)
Q Consensus 342 ~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~----~~~~~~a~~lr~~la~y~el~~~~~~g~~ld~~~ 417 (515)
||+++|||||||||||+| |||+.|+||+|+.++. ++|+++|+++|+.|++|+|+++++++|.+|++++
T Consensus 305 ~d~~~silDGqIvLsR~l--------ID~l~S~SRl~~~v~g~~t~~~h~~~a~~l~~~~a~y~e~~dli~iG~eLs~~d 376 (436)
T PRK02118 305 PDNTGYITEGQFYLRRGR--------IDPFGSLSRLKQLVIGKKTREDHGDLMNAMIRLYADSREAKEKMAMGFKLSNWD 376 (436)
T ss_pred HHHHHHhcCcEEEecccc--------ccCccccccccccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCHHH
Confidence 999999999999999999 9999999999988877 6999999999999999999999999999999999
Q ss_pred HHHHHhhHHHhhcccccccCCCCHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHH
Q psy2894 418 RKQLDRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFM 475 (515)
Q Consensus 418 ~~~l~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~~~G~ld~v~~~~v~~f~~~l~~~l 475 (515)
+..+.+++++++||-|.. +.++++|++...| .+|+..|.+++++..+++++..
T Consensus 377 ~~~l~~~~~~e~~~~~~g-~~~~~~etl~~~~----~~l~~~~~~~~~~~~~~~~~~~ 429 (436)
T PRK02118 377 EKLLKFSELFESRLMDLE-VNIPLEEALDLGW----KILAQCFHPEEVGIKEQLIDKY 429 (436)
T ss_pred HHHHHHHHHHHHHhhcCC-CcccHHHHHHHHH----HHHHHCCHHHHhcCCHHHHHHh
Confidence 999999999998665533 8899999999988 5566667777777767776644
No 29
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=2.1e-106 Score=866.30 Aligned_cols=414 Identities=23% Similarity=0.300 Sum_probs=381.7
Q ss_pred ceeEEEEEECcEEEEEecCCCcccCEEEEcC-CceEEEEEEeCCeEEEEEeCCCCCCCCCCEEEEcCCccccccCccccc
Q psy2894 27 NQGKVISVFDGICQIYGLSNAMQGEMLEFPG-NVFGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCG 105 (515)
Q Consensus 27 ~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~~-~~~g~V~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvg~~lLG 105 (515)
++|+|.+|.|++++++|++++.+||+|++.+ ++.|||++++++.+.+++|++++||++|++|.+||++++|++|++|||
T Consensus 1 ~~G~V~~v~G~vV~a~g~~~~~~gE~v~v~~~~l~gEVI~l~~d~a~iq~ye~t~Gl~~G~~V~~tg~~lsv~lGpglLG 80 (591)
T TIGR01042 1 EYGYIYKVSGPVVVAENMAGAAMYELVRVGHDELVGEIIRLEGDKATIQVYEETSGLTVGDPVLRTGKPLSVELGPGILG 80 (591)
T ss_pred CceEEEEEECCEEEEecCCCCCcCCEEEECCCceEEEEEEEcCCeEEEEEccCccCCCCCCEEEeCCCccEEEcCHHHhh
Confidence 4799999999999999998999999999975 489999999999999999999999999999999999999999999999
Q ss_pred eEecccCCcCCCCC----C-----------CCc-----------------------------------------------
Q psy2894 106 RVINALGDPIDGKG----P-----------IKT----------------------------------------------- 123 (515)
Q Consensus 106 rViD~lG~pid~~~----~-----------~~~----------------------------------------------- 123 (515)
||+|++|||||+.+ + +..
T Consensus 81 ~V~DgigrPLd~~~~~~~~~fi~rG~~~~~ld~~~~w~f~p~~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~ 160 (591)
T TIGR01042 81 NIFDGIQRPLKAIAEQSQSIYIPRGVNVPALDRDKKWEFTPKKLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTIT 160 (591)
T ss_pred cccCcCCCchHHHHhhccCccccCCCCCCCCCccccceeeccccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEE
Confidence 99999999999753 1 110
Q ss_pred ----------------------------ccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCc
Q psy2894 124 ----------------------------KLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGK 175 (515)
Q Consensus 124 ----------------------------~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GK 175 (515)
.++||+.. ||++++|.++++||.||+|+||+|+|||||||++|||++||||
T Consensus 161 ~i~~~g~ytv~~~i~~~~~~g~~~~~~m~~~wPvr~-p~p~~~R~~~~~PL~TG~RvID~lfPi~kGqr~~I~gg~G~GK 239 (591)
T TIGR01042 161 YIAPAGNYTVDDTVLEVEFQGVKKKFSMLQTWPVRS-PRPVTEKLPANTPLLTGQRVLDALFPCVQGGTTAIPGAFGCGK 239 (591)
T ss_pred EEccCCCceeeeEEEEEeeCCceeeeccceeeeccc-CCChhhccCCCCccccchhhhhhccchhcCCeEEEEcCCCcCH
Confidence 12689998 8889999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHH---------hhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhH
Q psy2894 176 SSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLL---------EKYGAMPYTIIVAATASDSASMQFISAYSGCTIG 246 (515)
Q Consensus 176 t~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l---------~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iA 246 (515)
|+| +.+|+++.++|+ |||++||||++||+||++++ ++.+.|+||++|++|+|+|+++|++++|+|+|||
T Consensus 240 T~l-~~~lak~s~aDv-iVyvg~GERG~Em~evle~fp~l~dp~~g~~~~~m~rtvlVa~tsd~p~~~R~~s~ytg~tiA 317 (591)
T TIGR01042 240 TVI-SQSLSKYSNSDA-IVYVGCGERGNEMAEVLMDFPELTMEVDGREESIMKRTTLVANTSNMPVAAREASIYTGITLA 317 (591)
T ss_pred HHH-HHHHHhccCcCE-EEEEEEeechHHHHHHHHHhHhhcccccccccccccceEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 999 588999999997 89999999999999999997 3457899999999999999999999999999999
Q ss_pred HHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceee
Q psy2894 247 EYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTA 326 (515)
Q Consensus 247 E~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~ 326 (515)
|||||+|+|||+++||+||||+|+||||+++||||+++|||+++|+.+++||||||++.+. ++. .+ +||||+
T Consensus 318 EYfRD~G~~Vll~~DS~tR~AeAlREIsl~lgE~P~~eGYPayl~SrLa~l~ERAG~~~~~-----~~~--~~-~GSIT~ 389 (591)
T TIGR01042 318 EYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCL-----GSP--ER-EGSVSI 389 (591)
T ss_pred HHHHhcCCCEEEEecChHHHHHHHHHHHhccCCCCCCCCcCccHHHHHHHHHHhccCCccC-----CCC--CC-CccEEE
Confidence 9999999999999999999999999999999999999999999999999999999997431 111 22 799999
Q ss_pred eeEEeecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccc------hHHHHHHHHHHHHHHHhh
Q psy2894 327 IPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQ------IKFIKKLSSNIRTDLAQY 400 (515)
Q Consensus 327 l~~v~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~------~~~~~~~a~~lr~~la~y 400 (515)
+++|++++||++|||++|+++|+||||+|||+||++||||||||+.|+||++..+. .++|.+++.++|.+|++|
T Consensus 390 i~aVs~~ggD~sePVt~~t~~i~~~f~~Ldr~LA~~ghyPAId~l~S~Sr~~~~l~~~~~~~~~~~~~~~~~~~~lL~~~ 469 (591)
T TIGR01042 390 VGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMRALEEFYEKFYPEFVPLRTKAKEILQEE 469 (591)
T ss_pred EEEEECCCCCCCCchHHHHHHHhcceeeeCHHHHhCCCCCCcCCchhhhhhhhhcccccccCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887 899999999999999999
Q ss_pred HHHHHHHHhc--cCCCHHHHHHHHhhHHHh-hccccc----ccCCCCHHHHHHHHHHH
Q psy2894 401 RELAAFSQFS--SDLDLVTRKQLDRGARVT-ELLKQK----QYSPLPVSLIAVILFAI 451 (515)
Q Consensus 401 ~el~~~~~~g--~~ld~~~~~~l~~~~~i~-~~L~Q~----~~~~~~~~~~~~~l~~~ 451 (515)
+|++++++++ ..+++.++..+.+++.++ .||+|+ ..+.+++++|+..|..+
T Consensus 470 ~el~eiv~l~g~~~l~~~d~~i~~~a~~i~e~FLqQ~a~~~~d~~~~~~kt~~~L~~i 527 (591)
T TIGR01042 470 EDLNEIVQLVGKDALAETDKITLEVAKLIKEDFLQQNGYTPYDRFCPFYKTVGMMRNM 527 (591)
T ss_pred HHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHH
Confidence 9999999987 467777777777777776 699999 55667999999888544
No 30
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=3.6e-106 Score=852.03 Aligned_cols=412 Identities=27% Similarity=0.410 Sum_probs=394.6
Q ss_pred ccCccceeEEEEEECcEEEEEecCCCcccCEEEEcC-----CceEEEEEEeCCeEEEEEeCCCCCCCCCCEEEEcCCccc
Q psy2894 22 TTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPG-----NVFGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILE 96 (515)
Q Consensus 22 ~~~~~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~~-----~~~g~V~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~ 96 (515)
....+.+|+|++|.|++++++|+. +++||+|.|.+ ...|+|++++++++.+++|+++.||+.|++|.+||++++
T Consensus 13 ~~~~~~~G~v~~v~g~~v~~~g~~-~~~ge~~~i~~~~~~~~~~~eVv~~~~~~~~l~~~~~t~gl~~G~~V~~tg~~~~ 91 (434)
T PRK08472 13 FNLSPRFGSITKISPTIIEADGLN-PSVGDIVKIESSDNGKECLGMVVVIEKEQFGISPFSFIEGFKIGDKVFISKEGLN 91 (434)
T ss_pred CCcceeeeEEEEEEccEEEEEecC-CCCCCEEEEecCCCCCceEEEEEEEeCCeEEEEEccCCCCCCCCCEEEeCCCceE
Confidence 366789999999999999999975 99999999953 278999999999999999999999999999999999999
Q ss_pred cccCccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCcc
Q psy2894 97 VPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKS 176 (515)
Q Consensus 97 vpvg~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GKt 176 (515)
||||++|||||+|++|+|||+++++...+++|++.++|+|++|.++++++.||+++||.++|+++|||.+|+|++|+|||
T Consensus 92 v~vg~~llGRViD~~G~plD~~g~~~~~~~~~i~~~~~~~~~R~~i~~~l~tgi~aid~l~~i~~Gq~~~i~G~sG~GKS 171 (434)
T PRK08472 92 IPVGRNLLGRVVDPLGRPIDGKGAIDYERYAPIMKAPIAAMKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKS 171 (434)
T ss_pred EEcChhhcCCEECCCCCcccCCCCCCcccccccccCCCCHHHcCCcceeccchhHHhhhcceecCCCEEEEECCCCCCHH
Confidence 99999999999999999999999887677789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcE
Q psy2894 177 SIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDA 256 (515)
Q Consensus 177 ~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~V 256 (515)
+| +.+|+++.+.++ +||++||+|++|+.+|++... .+.|++|++|++|+|+||++|++++|+|+++||||||+|+||
T Consensus 172 tL-l~~i~~~~~~~v-~vi~~iGergrev~e~~~~~l-~~~l~~tvvV~atsddsp~~R~~~~~~a~~iAEyFrd~G~~V 248 (434)
T PRK08472 172 TL-MGMIVKGCLAPI-KVVALIGERGREIPEFIEKNL-GGDLENTVIVVATSDDSPLMRKYGAFCAMSVAEYFKNQGLDV 248 (434)
T ss_pred HH-HHHHhhccCCCE-EEEEeeCccchhHHHHHHHHh-cCcccceEEEEECCCCCHHHhhHHHHHHHHHHHHHHHcCCCE
Confidence 99 699998887775 789999999999999998655 455999999999999999999999999999999999999999
Q ss_pred EEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEeecCCC
Q psy2894 257 LVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGD 336 (515)
Q Consensus 257 lli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~~~~D 336 (515)
|+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+. .| +||||+||+|++++||
T Consensus 249 ll~~DslTr~A~A~REi~l~~ge~P~~~Gyp~~vf~~l~~l~ERag~~-------------~g-~GSIT~~~tVlv~gdD 314 (434)
T PRK08472 249 LFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLSLLPQLMERAGKE-------------EG-KGSITAFFTVLVEGDD 314 (434)
T ss_pred EEecccchHHHHHHHHHHHhcCCCCCccCcCchHHHHHHHHHHHhccC-------------CC-CceeeEeEEEEecCCC
Confidence 999999999999999999999999999999999999999999999996 55 8999999999999999
Q ss_pred CCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHHHhhHHHHHHHHhcc---CC
Q psy2894 337 ISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSS---DL 413 (515)
Q Consensus 337 ~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~la~y~el~~~~~~g~---~l 413 (515)
++|||||+++||+||||+|||+||++||||||||+.|+||+|+.++.++|+++|.++|++|++|+|+++|+++|+ +.
T Consensus 315 ~~dpi~d~~~~i~Dg~ivLsr~la~~g~~PAIDvl~S~SR~~~~~~~~~~~~~a~~~r~~l~~y~e~e~li~~G~y~~g~ 394 (434)
T PRK08472 315 MSDPIADQSRSILDGHIVLSRELTDFGIYPPINILNSASRVMNDIISPEHKLAARKFKRLYSLLKENEVLIRIGAYQKGN 394 (434)
T ss_pred CCCCchHHhhhhcceEEEEcHHHHhCCCCCccCCccccCccchhcCCHHHHHHHHHHHHHHHhchhHHHHHHhhCccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999995 89
Q ss_pred CHHHHHHHHhhHHHhhcccccccCCCCHHHHHHHHHHH
Q psy2894 414 DLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAI 451 (515)
Q Consensus 414 d~~~~~~l~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~ 451 (515)
|++++++++++++|++||+|+.++++++++++..|..+
T Consensus 395 d~~~d~ai~~~~~i~~fL~Q~~~~~~~~~~~~~~l~~~ 432 (434)
T PRK08472 395 DKELDEAISKKEFMEQFLKQNPNELFPFEQTFEQLEEI 432 (434)
T ss_pred CHHHHHHHHhHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999998765
No 31
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=3.1e-106 Score=869.91 Aligned_cols=410 Identities=26% Similarity=0.365 Sum_probs=384.2
Q ss_pred ceeEEEEEECcEEEEEecCCCcccCEEEEc-CCceEEEEEEeCCeEEEEEeCCCCCCCCCCEEEEcCCccccccCccccc
Q psy2894 27 NQGKVISVFDGICQIYGLSNAMQGEMLEFP-GNVFGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCG 105 (515)
Q Consensus 27 ~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~-~~~~g~V~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvg~~lLG 105 (515)
..|+|++|.|++++++|+.++.+||+|.+. +++.|+|++++++.+.+++|++++||++|++|.+||++++|++|++|||
T Consensus 3 ~~G~I~~V~Gpvv~~~~~~~~~~~E~v~v~~~~l~gEVi~~~~d~a~iqv~e~T~Gl~~G~~V~~tg~plsv~lGpglLG 82 (586)
T PRK04192 3 TKGKIVRVSGPLVVAEGMGGARMYEVVRVGEEGLIGEIIRIEGDKATIQVYEETSGIKPGEPVEFTGEPLSVELGPGLLG 82 (586)
T ss_pred ceeEEEEEECcEEEEEeCCCCCccCEEEECCCcEEEEEEEEeCCceEEEEecCCcCCCCCCEEEeCCCccEEEcCHHhcC
Confidence 579999999999999999889999999997 3489999999999999999999999999999999999999999999999
Q ss_pred eEecccCCcCCCCCC----C----------C-------------------------------------------------
Q psy2894 106 RVINALGDPIDGKGP----I----------K------------------------------------------------- 122 (515)
Q Consensus 106 rViD~lG~pid~~~~----~----------~------------------------------------------------- 122 (515)
||+|++|+|||+.+. + .
T Consensus 83 rv~Dg~grPLd~~~~~~~~~i~rG~~~~~l~~~~~w~f~p~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~~~~i 162 (586)
T PRK04192 83 SIFDGIQRPLDELAEKSGDFLERGVYVPALDREKKWEFTPTVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVKEI 162 (586)
T ss_pred CeecCCCCcccccchhcccccccCCCCCCCCcccccceecccccCCEecCCceEEEEecCCceeeeeecCCCCceEEEEE
Confidence 999999999997641 1 1
Q ss_pred --------------------------cccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCcc
Q psy2894 123 --------------------------TKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKS 176 (515)
Q Consensus 123 --------------------------~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GKt 176 (515)
..++||+..++|. .+|.++++||.||+|+||+|+||+||||++|+|++|+|||
T Consensus 163 ~~~G~ytv~~~i~~~~~~~G~~~~~~~~~~wPvr~~~p~-~~R~~~~~pL~TGirvID~l~Pi~kGq~~~Ipg~~G~GKT 241 (586)
T PRK04192 163 VSEGDYTVDDTIAVLEDEDGEGVELTMMQKWPVRRPRPY-KEKLPPVEPLITGQRVIDTFFPVAKGGTAAIPGPFGSGKT 241 (586)
T ss_pred ccCCCceeeeEEEEEEccCCceeeeccccccccccCCcc-cccCCCCCccccCchhhhcccccccCCeEEEecCCCCCHH
Confidence 1145899999887 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhh-------cCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHH
Q psy2894 177 SIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEK-------YGAMPYTIIVAATASDSASMQFISAYSGCTIGEYF 249 (515)
Q Consensus 177 ~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~-------~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~f 249 (515)
+| +.+|+++.++|+ |||++||||++|+++|++++.+ .++|+|||+|+||||+|+++|++++|+|+|+||||
T Consensus 242 vl-~~~iak~a~adi-vVyvg~GERg~E~~e~l~ef~~l~dp~~g~~~m~RTvlVanTSn~Pv~aR~~s~ytgiTiAEYf 319 (586)
T PRK04192 242 VT-QHQLAKWADADI-VIYVGCGERGNEMTEVLEEFPELIDPKTGRPLMERTVLIANTSNMPVAAREASIYTGITIAEYY 319 (586)
T ss_pred HH-HHHHHhcCCCCE-EEEEEcCcChHHHHHHHHHHHhhcccccccccceeEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 99 699999999985 8999999999999999999865 56899999999999999999999999999999999
Q ss_pred HHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeE
Q psy2894 250 RDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPI 329 (515)
Q Consensus 250 rd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~ 329 (515)
||+|+|||+++||+||||+|+||||++++|||+++||||++|+.+++||||||++.+. .|.+||||++++
T Consensus 320 Rd~G~~Vllm~DStSR~AeAlREIS~~l~E~P~~eGYP~yL~S~La~~yERAG~v~~~----------~~~~GSIT~i~a 389 (586)
T PRK04192 320 RDMGYDVLLMADSTSRWAEALREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTL----------GGEEGSVTIIGA 389 (586)
T ss_pred HHCCCCEEEEecChHHHHHHHHHHHHhcCCCCccCCcCccHHHHHHHHHHhhcccccC----------CCCCcceEEEEE
Confidence 9999999999999999999999999999999999999999999999999999998542 223799999999
Q ss_pred EeecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccch-------HHHHHHHHHHHHHHHhhHH
Q psy2894 330 IETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQI-------KFIKKLSSNIRTDLAQYRE 402 (515)
Q Consensus 330 v~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~-------~~~~~~a~~lr~~la~y~e 402 (515)
|++++||++||||+++++|+||||+|||+||++||||||||+.|+||++..+.. +.|.+++.+++.+|++|+|
T Consensus 390 Vs~pggD~sePVt~~t~~i~dg~i~Ldr~LA~~ghyPAId~l~S~Sr~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~~e 469 (586)
T PRK04192 390 VSPPGGDFSEPVTQNTLRIVKVFWALDAELADRRHFPAINWLTSYSLYLDQVAPWWEENVDPDWRELRDEAMDLLQREAE 469 (586)
T ss_pred EECCCCCCCcchHHHHHHHhCceEEEcHHHHhCCcCCccCCccchhhhhhcccchhhcccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998865 8999999999999999999
Q ss_pred HHHHHHh-cc-CCCHHHHHHHHhhHHHhh-cccccccCCC----CHHHHHHHHH
Q psy2894 403 LAAFSQF-SS-DLDLVTRKQLDRGARVTE-LLKQKQYSPL----PVSLIAVILF 449 (515)
Q Consensus 403 l~~~~~~-g~-~ld~~~~~~l~~~~~i~~-~L~Q~~~~~~----~~~~~~~~l~ 449 (515)
+++++++ |. +|+++++..+.+++.|++ ||+|++|+++ |+++|...|.
T Consensus 470 l~eiv~lvG~d~Ls~~d~~~l~~a~~i~~~fL~Q~~f~~~d~~~~l~k~~~~l~ 523 (586)
T PRK04192 470 LQEIVRLVGPDALPEEDRLILEVARLIREDFLQQNAFDPVDTYCPPEKQYEMLK 523 (586)
T ss_pred HHHHHHHhCcccCCHHHHHHHHHHHHHHHhhcCCCCCCCccccccHHHHHHHHH
Confidence 9999996 85 699999999999999995 9999999887 8888877664
No 32
>PRK08149 ATP synthase SpaL; Validated
Probab=100.00 E-value=6.4e-105 Score=841.24 Aligned_cols=409 Identities=25% Similarity=0.367 Sum_probs=390.6
Q ss_pred ccceeEEEEEECcEEEEEecCCCcccCEEEEc-----CCce--EEEEEEeCCeEEEEEeCCCCCCCCCCEEEEcCCcccc
Q psy2894 25 IYNQGKVISVFDGICQIYGLSNAMQGEMLEFP-----GNVF--GLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEV 97 (515)
Q Consensus 25 ~~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~-----~~~~--g~V~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~v 97 (515)
.+.+|+|++|.|.+++++| +++++||+|+|. +.+. ++|++++++.+.+++|+++.|++.|++|..+|++++|
T Consensus 4 ~~~~g~v~~i~g~~i~~~~-~~~~~ge~~~i~~~~~~~~~~~~~evv~~~~~~~~l~~~~~~~gi~~g~~v~~~~~~~~v 82 (428)
T PRK08149 4 LQRLAHPLRIQGPIIEAEL-PDVAIGEICEIRAGWHSNEVIARAQVVGFQRERTILSLIGNAQGLSRQVVLKPTGKPLSV 82 (428)
T ss_pred eeeeeEEEEEEeeEEEEEE-CCCCcCCEEEEeecCCCCceeeEEEEEEeeCcEEEEEECCCccCCCCCCEEEEcCCcCEE
Confidence 4678999999999999997 799999999993 1245 8999999999999999999999999999999999999
Q ss_pred ccCccccceEecccCCcCCCCC--CCC--cccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCC
Q psy2894 98 PIGPELCGRVINALGDPIDGKG--PIK--TKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQT 173 (515)
Q Consensus 98 pvg~~lLGrViD~lG~pid~~~--~~~--~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~ 173 (515)
|||++|||||+|++|+|||+.+ +.. ...++|++..||++++|.++++|+.||+++||.++|+++|||++|||++|+
T Consensus 83 ~vg~~llGrv~d~~G~piD~~~~~~~~~~~~~~~~i~~~~~~~~~R~~i~e~l~tGi~aid~ll~i~~Gq~i~I~G~sG~ 162 (428)
T PRK08149 83 WVGEALLGAVLDPTGKIVERFDAPPTVGPISEERVIDVAPPSYAERRPIREPLITGVRAIDGLLTCGVGQRMGIFASAGC 162 (428)
T ss_pred EeChhhcCCeeCCCCCCcCCCCCCcccccccceeehhccCCcchhccCccccccCCcEEEeeeeeEecCCEEEEECCCCC
Confidence 9999999999999999999986 332 245689999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcC
Q psy2894 174 GKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHG 253 (515)
Q Consensus 174 GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G 253 (515)
||||| +++|+++.+.++ +||++||+|++|+.+|++++.+.+.++|+++|++|+|+||.+|+++||+|+|+||||||+|
T Consensus 163 GKTTL-l~~i~~~~~~dv-~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~~a~tiAE~fr~~G 240 (428)
T PRK08149 163 GKTSL-MNMLIEHSEADV-FVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAALVATTVAEYFRDQG 240 (428)
T ss_pred ChhHH-HHHHhcCCCCCe-EEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHHHHHHHHHHHHHcC
Confidence 99999 799999998887 4689999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEeec
Q psy2894 254 KDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQ 333 (515)
Q Consensus 254 ~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~~ 333 (515)
+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||++ ++||||+||+|+++
T Consensus 241 ~~Vll~~DslTr~A~A~rEi~l~~ge~P~~~Gyp~~vfs~l~~l~ERag~~---------------~~GSIT~~~tVl~~ 305 (428)
T PRK08149 241 KRVVLFIDSMTRYARALRDVALAAGELPARRGYPASVFDSLPRLLERPGAT---------------LAGSITAFYTVLLE 305 (428)
T ss_pred CCEEEEccchHHHHHHHHHhHhhcCCCCcccccCccHHHHHHHHHHhccCC---------------CCCCceEEEEEEec
Confidence 999999999999999999999999999999999999999999999999986 37999999999999
Q ss_pred CCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHHHhhHHHHHHHHhcc--
Q psy2894 334 AGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSS-- 411 (515)
Q Consensus 334 ~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~la~y~el~~~~~~g~-- 411 (515)
+||++|||||+++|||||||+|||+||++||||||||+.|+||+|++++.+.|+++|.++|++|++|+|+++|+++|+
T Consensus 306 ~dD~~dpi~d~~~~ilDg~ivLsr~La~~g~yPAIDvl~S~SR~~~~~~~~~~~~~a~~~r~~l~~y~e~e~li~~G~y~ 385 (428)
T PRK08149 306 SEEEPDPIGDEIRSILDGHIYLSRKLAAKGHYPAIDVLKSVSRVFGQVTDPKHRQLAAAFRKLLTRLEELQLFIDLGEYR 385 (428)
T ss_pred CCCCCCCchhhhheeccEEEEEcHHHHhCCCCCcccCccccccchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred -CCCHHHHHHHHhhHHHhhcccccccCCCCHHHHHHHHHHH
Q psy2894 412 -DLDLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAI 451 (515)
Q Consensus 412 -~ld~~~~~~l~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~ 451 (515)
+-|++.+.++.++++|++||+|+.++++++++++..|..+
T Consensus 386 ~g~~~~~d~ai~~~~~i~~fl~Q~~~~~~~~~~~~~~l~~~ 426 (428)
T PRK08149 386 RGENADNDRAMDKRPALEAFLKQDVAEKSSFSDTLERLNEF 426 (428)
T ss_pred CCCCHHHHHHHHhHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 5699999999999999999999999999999999998754
No 33
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=1.2e-104 Score=839.62 Aligned_cols=405 Identities=30% Similarity=0.471 Sum_probs=388.2
Q ss_pred eEEEEEECcEEEEEecCCCcccCEEEEc--CC--ceEEEEEEeCCeEEEEEeCCCCCCCCCCEEEEcCCccccccCcccc
Q psy2894 29 GKVISVFDGICQIYGLSNAMQGEMLEFP--GN--VFGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELC 104 (515)
Q Consensus 29 G~V~~I~g~iv~v~Gl~~~~~gElv~~~--~~--~~g~V~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvg~~lL 104 (515)
|+|++|.|.+++|+|. ++.+||+|.+. ++ ..|+|++++++.+.+++|+++.||+.|++|.+||++++||||++||
T Consensus 1 G~V~~i~G~~i~v~~~-~~~ige~~~i~~~~~~~~~~eVi~~~~~~v~l~~~~~t~gl~~G~~V~~tg~~~~vpvg~~lL 79 (413)
T TIGR03497 1 GKVTRVIGLTIESKGP-KAKIGELCSILTKGGKPVLAEVVGFKEENVLLMPLGEVEGIGPGSLVIATGRPLAIKVGKGLL 79 (413)
T ss_pred CeEEEEECCEEEEEeC-CCCcCCEEEEEeCCCCeEEEEEEEEcCCeEEEEEccCccCCCCCCEEEEcCCeeEEEcchhhc
Confidence 8999999999999995 89999999994 23 6899999999999999999999999999999999999999999999
Q ss_pred ceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCccHHHHHHHH
Q psy2894 105 GRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIII 184 (515)
Q Consensus 105 GrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GKt~l~~~~i~ 184 (515)
|||+|++|+|||+++++...+++|++..+|++++|.++++|+.||+++||.++|+++|||++|||++|+|||+| +++|+
T Consensus 80 GRVid~~G~plD~~~~~~~~~~~~i~~~~p~~~~R~~~~~~~~tGi~~iD~l~~i~~Gqri~I~G~sG~GKTtL-l~~i~ 158 (413)
T TIGR03497 80 GRVLDGLGRPLDGEGPIIGEEPYPLDNPPPNPLKRPRIRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTL-LGMIA 158 (413)
T ss_pred CCEEcCCCCcccCCCCCCCCccccccCCCcChHHccchhhhccccceeeeeEEEEcCCCEEEEECCCCCCHHHH-HHHHh
Confidence 99999999999999888777789999999999999999999999999999999999999999999999999999 69999
Q ss_pred HhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechh
Q psy2894 185 NQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLS 264 (515)
Q Consensus 185 ~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dslt 264 (515)
++...+. ++++++|||++|+++|+++..+...|+||++|++|+|+||.+|+++||+|+|+||||||+|+|||+++||+|
T Consensus 159 ~~~~~~~-gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~~~~a~tiAEyfr~~G~~Vll~~Dslt 237 (413)
T TIGR03497 159 RNAKADI-NVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKAAFTATAIAEYFRDQGKDVLLMMDSVT 237 (413)
T ss_pred CCCCCCe-EEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEcCcH
Confidence 9888776 688999999999999999866666699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEeecCCCCCCccccc
Q psy2894 265 KQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTN 344 (515)
Q Consensus 265 r~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~~~~D~s~pI~~~ 344 (515)
|||+|+||||+++||||+++||||++|+.|++|+||||+. .+||||+||+|++++||++|||||+
T Consensus 238 r~A~A~rEisl~~ge~P~~~gyp~~~f~~l~~l~ERag~~---------------~~GSIT~~~tVl~~gdD~~dpi~~~ 302 (413)
T TIGR03497 238 RFAMAQREIGLAVGEPPTTRGYTPSVFSLLPKLLERSGNS---------------QKGSITGFYTVLVDGDDMNEPIADA 302 (413)
T ss_pred HHHHHHHHHHHhcCCCCCCCCcCchHHHHhHHHHHHhcCC---------------CCcceeEEEEEEccCCCCCCcchhh
Confidence 9999999999999999999999999999999999999983 3899999999999999999999999
Q ss_pred ccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHHHhhHHHHHHHHhc---cCCCHHHHHHH
Q psy2894 345 VISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFS---SDLDLVTRKQL 421 (515)
Q Consensus 345 ~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~la~y~el~~~~~~g---~~ld~~~~~~l 421 (515)
++|||||||+|||+||++||||||||+.|+||+++.++.+.|+++|.++|++|++|+|+++++++| .+.|+++++++
T Consensus 303 ~~si~dg~ivLsr~la~~g~~PAId~~~S~SR~~~~~~~~~~~~~a~~~r~~l~~y~e~~~li~~g~~~~g~d~~~~~~i 382 (413)
T TIGR03497 303 VRGILDGHIVLSRELAAKNHYPAIDVLASVSRVMNEIVSEEHKELAGKLRELLAVYKEAEDLINIGAYKRGSNPKIDEAI 382 (413)
T ss_pred ccccccEEEEECHHHHhCCCCCccCCccccccCccccCCHHHHHHHHHHHHHHHhhHHHHHHHHhcCcccCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998 36799999999
Q ss_pred HhhHHHhhcccccccCCCCHHHHHHHHHHH
Q psy2894 422 DRGARVTELLKQKQYSPLPVSLIAVILFAI 451 (515)
Q Consensus 422 ~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~ 451 (515)
.++++|++||+|+.++++++++++..|..+
T Consensus 383 ~~~~~i~~fl~Q~~~~~~~~~~~~~~l~~~ 412 (413)
T TIGR03497 383 RYIEKINSFLKQGIDEKFTFEETVQLLKTL 412 (413)
T ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHhh
Confidence 999999999999999999999999998754
No 34
>PRK05922 type III secretion system ATPase; Validated
Probab=100.00 E-value=3.2e-104 Score=836.34 Aligned_cols=411 Identities=24% Similarity=0.324 Sum_probs=392.3
Q ss_pred ccCccceeEEEEEECcEEEEEecCCCcccCEEEEcC----CceEEEEEEeCCeEEEEEeCCCCCCCCCCEEEEcCCcccc
Q psy2894 22 TTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPG----NVFGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEV 97 (515)
Q Consensus 22 ~~~~~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~~----~~~g~V~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~v 97 (515)
....+.+|+|++|.|++++++|+ .+.+||+|.|.. +..|+|++++++.+.+++|+++.||+.|++|.+++++++|
T Consensus 14 ~~~~~~~g~v~~v~g~~i~~~g~-~~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~G~~V~~~~~~~~v 92 (434)
T PRK05922 14 WQPYRECGLLSRVSGNLLEAQGL-SACLGELCQISLSKSPPILAEVIGFHNRTTLLMSLSPIHYVALGAEVLPLRRPPSL 92 (434)
T ss_pred CCcceeeeEEEEEEccEEEEEeC-CCCCCCEEEEecCCCCeeEEEEEEEeCCeEEEEEccCCCCCCCCCEEEeCCCCcEE
Confidence 35677899999999999999996 588999999941 3789999999999999999999999999999999999999
Q ss_pred ccCccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCccH
Q psy2894 98 PIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSS 177 (515)
Q Consensus 98 pvg~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GKt~ 177 (515)
|+|++|||||+|++|+|||+++++....++|++..+|++++|.++++||+||||+||.++|+++|||++|||++|+|||+
T Consensus 93 ~vg~~llGrv~d~~G~pld~~~~~~~~~~~pi~~~~~~~~~R~~i~e~l~TGIr~ID~ll~I~~GqrigI~G~nG~GKST 172 (434)
T PRK05922 93 HLSDHLLGRVLDGFGNPLDGKEQLPKTHLKPLFSSPPSPMSRQPIQEIFPTGIKAIDAFLTLGKGQRIGVFSEPGSGKSS 172 (434)
T ss_pred EcChhhcCCEeCCCCCccCCCCCCCccceeecccCCCChhhcCCcceecCCCceeecceEEEcCCcEEEEECCCCCChHH
Confidence 99999999999999999999988877677899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEE
Q psy2894 178 IAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDAL 257 (515)
Q Consensus 178 l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vl 257 (515)
| +.+|+++...+. ++|++||+|++|+.+|++.+.+...+++|++|++|+|+||.+|+++||+|+|+||||||+|+|||
T Consensus 173 L-L~~Ia~~~~~d~-gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~~a~tiAEyfrd~G~~VL 250 (434)
T PRK05922 173 L-LSTIAKGSKSTI-NVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRAAMTIAEYFRDQGHRVL 250 (434)
T ss_pred H-HHHHhccCCCCc-eEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 9 799999887775 89999999999999999998888899999999999999999999999999999999999999999
Q ss_pred EEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEeecCCCC
Q psy2894 258 VVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDI 337 (515)
Q Consensus 258 li~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~~~~D~ 337 (515)
+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+. .+||||+||+|++++| .
T Consensus 251 l~~DslTR~A~A~REisl~~ge~P~~~gyp~svfs~l~~l~ERag~~---------------~~GSIT~~~tVl~~~~-~ 314 (434)
T PRK05922 251 FIMDSLSRWIAALQEVALARGETLSAHHYAASVFHHVSEFTERAGNN---------------DKGSITALYAILHYPN-H 314 (434)
T ss_pred EeccchhHHHHHHHHHHHhcCCCCCcCCcCchHHHHhHHHHHhhcCC---------------CCcceeEEEEEEecCC-C
Confidence 99999999999999999999999999999999999999999999983 3899999999999998 7
Q ss_pred CCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHHHhhHHHHHHHHhc---cCCC
Q psy2894 338 SAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFS---SDLD 414 (515)
Q Consensus 338 s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~la~y~el~~~~~~g---~~ld 414 (515)
.|||+|+++|||||||||||+|+++| ||||||+.|+||+|++++.++|+++|.++|++|++|+|+|+|+++| .+.|
T Consensus 315 ~dpi~d~~rsilDGhIvLsr~la~~~-~PAIDvl~S~SR~~~~~~~~~~~~~a~~~r~~l~~y~e~edli~~G~y~~g~d 393 (434)
T PRK05922 315 PDIFTDYLKSLLDGHFFLTPQGKALA-SPPIDILTSLSRSARQLALPHHYAAAEELRSLLKAYHEALDIIQLGAYVPGQD 393 (434)
T ss_pred CCccccchhhhcCcEEEEcHHHHhCC-CCCcCCccccccCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC
Confidence 89999999999999999999998887 9999999999999999999999999999999999999999999999 4789
Q ss_pred HHHHHHHHhhHHHhhcccccccCCCCHHHHHHHHHHHh
Q psy2894 415 LVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAIN 452 (515)
Q Consensus 415 ~~~~~~l~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~~ 452 (515)
++.+++++..+.|++||+|+..++.++++++..|..+.
T Consensus 394 ~~~d~a~~~~~~i~~fl~Q~~~~~~~~~~~~~~l~~~~ 431 (434)
T PRK05922 394 AHLDRAVKLLPSIKQFLSQPLSSYCALHNTLKQLEALL 431 (434)
T ss_pred HHHHHHHHhHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987653
No 35
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=8.3e-104 Score=834.50 Aligned_cols=434 Identities=26% Similarity=0.376 Sum_probs=407.0
Q ss_pred ChHHHHHHHHHHHHccc-CccCccceeEEEEEECcEEEEEecC-CCcccCEEEEcC--C-ceEEEEEEeCCeEEEEEeCC
Q psy2894 4 NASEISTIIQEQIKNFN-NTTEIYNQGKVISVFDGICQIYGLS-NAMQGEMLEFPG--N-VFGLALNLERDSIGAVILGK 78 (515)
Q Consensus 4 ~~~~~~~~l~~~i~~~~-~~~~~~~~G~V~~I~g~iv~v~Gl~-~~~~gElv~~~~--~-~~g~V~~l~~~~v~~~~~~~ 78 (515)
.++.....++++++.|. .....+.+|+|++|.|+++++.|++ ++++||+|+|.+ + ..|+|++|+++.+.+++|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~v~~v~g~~~~~~g~~~~~~iGe~~~i~~~~~~~~~eVv~~~~~~~~l~~~~~ 81 (450)
T PRK06002 2 TPDNALARLAALVERYAAPEPLVRIGGTVSEVTASHYRVRGLSRFVRLGDFVAIRADGGTHLGEVVRVDPDGVTVKPFEP 81 (450)
T ss_pred CcccHHHHHHHHHHhcccccCccceeEEEEEEeceEEEEEcCccCCCCCCEEEEECCCCcEEEEEEEEeCCeEEEEEccC
Confidence 56777888999999998 7788899999999999999999975 799999999953 2 68999999999999999999
Q ss_pred CCCCCCCCEEEEcCCccccccCccccceEecccCCcCCCCCCCCccc-ccccccCCCCccccCCCccccccccccccccc
Q psy2894 79 YEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKL-TAPIEKVAPGVISRQSVSEPLQTGIKAIDSIV 157 (515)
Q Consensus 79 ~~gi~~G~~V~~tg~~~~vpvg~~lLGrViD~lG~pid~~~~~~~~~-~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~ 157 (515)
+.||++|++|.. ++.+++|+|++|||||+|++|+|||+.+++...+ ++|++..+|++++|..+++++.||+++||.+.
T Consensus 82 ~~gi~~g~~v~~-~~~~~v~vg~~llGRV~d~~G~piDg~~~~~~~~~~~~i~~~~p~~~~r~~v~~~l~TGi~aID~L~ 160 (450)
T PRK06002 82 RIEIGLGDAVFR-KGPLRIRPDPSWKGRVINALGEPIDGLGPLAPGTRPMSIDATAPPAMTRARVETGLRTGVRVIDIFT 160 (450)
T ss_pred CcCCCCCCEEEe-CCCceeecCcccccCEECCCCcCCCCCCCCCCCcceeeccCCCCCCeEeecceEEcCCCcEEeeeec
Confidence 999999999999 6689999999999999999999999998877644 57999999999999999999999999999999
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHH
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFI 237 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~ 237 (515)
||++|||++|+|++|+||||| +.+|......+. ++|+++|||++|+.+|.+..... .++|+++|++++|+||.+|++
T Consensus 161 ~I~~Gqri~I~G~SGsGKTTL-L~~Ia~l~~pd~-gvv~liGergrev~e~~~~~l~~-~r~rtI~vV~qsd~~~~~r~~ 237 (450)
T PRK06002 161 PLCAGQRIGIFAGSGVGKSTL-LAMLARADAFDT-VVIALVGERGREVREFLEDTLAD-NLKKAVAVVATSDESPMMRRL 237 (450)
T ss_pred eecCCcEEEEECCCCCCHHHH-HHHHhCCCCCCe-eeeeecccCCccHHHHhHHHHHH-hhCCeEEEEEcCCCCHHHHHH
Confidence 999999999999999999999 577776666664 68999999999999999865543 388999999999999999999
Q ss_pred HHhhhhhhHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcc
Q psy2894 238 SAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKV 317 (515)
Q Consensus 238 a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~ 317 (515)
+||+|+|+||||||+|+|||+++||+||||+|+||||+++||||+++||||++|+.||+|+||||+..
T Consensus 238 ~~~~a~~iAEyfrd~G~~Vll~~DslTr~A~A~rEisl~~ge~P~~~gyp~~vf~~l~~l~ERag~~~------------ 305 (450)
T PRK06002 238 APLTATAIAEYFRDRGENVLLIVDSVTRFAHAAREVALAAGEPPVARGYPPSVFSELPRLLERAGPGA------------ 305 (450)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchHHHHHHHHHHHHhcCCCCccccCCccHHHHhhHHHHHhccCC------------
Confidence 99999999999999999999999999999999999999999999999999999999999999999852
Q ss_pred cCCCCceeeeeEEeecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHH
Q psy2894 318 TGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDL 397 (515)
Q Consensus 318 ~g~~GSiT~l~~v~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~l 397 (515)
.+ +||||+||+|++++||++|||||+++|||||||+|||+||++||||||||+.|+||+|+.++.++|+++|.++|++|
T Consensus 306 ~~-~GSIT~~~tvl~~~dd~~dpI~d~~~~i~Dg~ivLsr~la~~g~~PAIDv~~S~SR~~~~~~~~~~~~~a~~~r~~l 384 (450)
T PRK06002 306 EG-GGSITGIFSVLVDGDDHNDPVADSIRGTLDGHIVLDRAIAEQGRYPAVDPLASISRLARHAWTPEQRKLVSRLKSMI 384 (450)
T ss_pred CC-CeeeeEEEEEEecCCCCCCccHHHHHhhcceEEEEcHHHHhCCCCCccCCccccCcccccccCHHHHHHHHHHHHHH
Confidence 23 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHhc---cCCCHHHHHHHHhhHHHhhcccccccCCCCHHHHHHHHHHHhcCc
Q psy2894 398 AQYRELAAFSQFS---SDLDLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAINKGF 455 (515)
Q Consensus 398 a~y~el~~~~~~g---~~ld~~~~~~l~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~~~G~ 455 (515)
++|+|+++|+++| .+-|++.+++++++++|++||+|+.+++++ ++++..|..+..|.
T Consensus 385 a~y~e~e~li~ig~y~~G~d~~~D~ai~~~~~i~~fL~Q~~~~~~~-~~~~~~l~~~~~~~ 444 (450)
T PRK06002 385 ARFEETRDLRLIGGYRAGSDPDLDQAVDLVPRIYEALRQSPGDPPS-DDAFADLAAALKGA 444 (450)
T ss_pred HHHHHHHHHHHhhccccCCChHHHHHHHhHHHHHHHhCCCCCCCCC-HHHHHHHHHHHhhH
Confidence 9999999999998 478999999999999999999999999999 99999999887764
No 36
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=7.4e-104 Score=834.42 Aligned_cols=423 Identities=25% Similarity=0.363 Sum_probs=400.6
Q ss_pred HHHHHHcccCccCccceeEEEEEECcEEEEEecCCCcccCEEEEc--CC--ceEEEEEEeCCeEEEEEeCCCCCCCCCCE
Q psy2894 12 IQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFP--GN--VFGLALNLERDSIGAVILGKYEHITEGDI 87 (515)
Q Consensus 12 l~~~i~~~~~~~~~~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~--~~--~~g~V~~l~~~~v~~~~~~~~~gi~~G~~ 87 (515)
+.+.++..+.....+.+|+|++|.|.++++.|+ .+.+||+|++. ++ ..|||++++++.+.+++|+++.|++.|++
T Consensus 2 ~~~~~~~~~~~~~~~~~G~v~~v~g~~~~~~~~-~~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g~~ 80 (434)
T PRK07196 2 LDHALKSIENIHLARVAGRLVRVTGLLLESVGC-RLAIGQRCRIESVDETFIEAQVVGFDRDITYLMPFKHPGGVLGGAR 80 (434)
T ss_pred hHHHHhhhccCCccceeeEEEEEEcCEEEEecC-CCCcCCEEEEEeCCCceEEEEEEEecCCEEEEEECCCccCCCCCCE
Confidence 345566666667788999999999999999995 79999999993 33 78999999999999999999999999999
Q ss_pred EEEcCCccccccCccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCcceee
Q psy2894 88 VKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELI 167 (515)
Q Consensus 88 V~~tg~~~~vpvg~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I 167 (515)
|.+||++++||||++|||||+|++|+|||+++++....+++++.++|+|++|.++++||+||+++||.++|+++|||++|
T Consensus 81 v~~~~~~~~v~vg~~llGrv~d~~G~pld~~~~~~~~~~~~~~~~~~~p~~R~~~~~~l~TGi~aID~ll~I~~GQ~igI 160 (434)
T PRK07196 81 VFPSEQDGELLIGDSWLGRVINGLGEPLDGKGQLGGSTPLQQQLPQIHPLQRRAVDTPLDVGVNAINGLLTIGKGQRVGL 160 (434)
T ss_pred EEECCCccEEEcCccccCCeeCcCCCCcCCCCCCCCCceeeccCCCCChHHhcccccccccceeeccceEeEecceEEEE
Confidence 99999999999999999999999999999998876666779999999999999999999999999999999999999999
Q ss_pred ecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHH
Q psy2894 168 IGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGE 247 (515)
Q Consensus 168 ~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE 247 (515)
||++|+||||| +++|.++...++ +|+++||+|++|+.+|+++......+.|++++++++|+|+.+|+.++++++++||
T Consensus 161 ~G~sGaGKSTL-l~~I~g~~~~dv-~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a~e~a~~iAE 238 (434)
T PRK07196 161 MAGSGVGKSVL-LGMITRYTQADV-VVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATELCHAIAT 238 (434)
T ss_pred ECCCCCCccHH-HHHHhcccCCCe-EEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHHHHHHHHHHH
Confidence 99999999999 699999888886 4679999999999999987555566999999999999999999999999999999
Q ss_pred HHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeee
Q psy2894 248 YFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAI 327 (515)
Q Consensus 248 ~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l 327 (515)
|||++|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+. .| +||||+|
T Consensus 239 yfr~~g~~Vll~~Dsltr~a~A~REisl~~ge~P~~~Gyp~svf~~l~~l~ERag~~-------------~~-~GSIT~~ 304 (434)
T PRK07196 239 YYRDKGHDVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNS-------------SG-NGTMTAI 304 (434)
T ss_pred HhhhccCCEEEeecchhHHHhhhhHHHHhcCCCCcccCcCHHHHHHhHHHHHHhhcC-------------CC-CEEeeee
Confidence 999999999999999999999999999999999999999999999999999999986 44 7999999
Q ss_pred eEEeecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHHHhhHHHHHHH
Q psy2894 328 PIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFS 407 (515)
Q Consensus 328 ~~v~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~la~y~el~~~~ 407 (515)
|+|++++||++|||||+++|||||||+|||+||++||||||||+.|+||+|+.++.++|+++|.++|++|++|+|+++|+
T Consensus 305 ~tVl~~~dD~~dpi~d~~~~ilDG~ivLsr~la~~g~yPAIDvl~S~SR~~~~~~~~~~~~~a~~~r~~~a~y~e~~~li 384 (434)
T PRK07196 305 YTVLAEGDDQQDPIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMSQVIGSQQAKAASLLKQCYADYMAIKPLI 384 (434)
T ss_pred eEEEccCCCCCCchhHhhhhhcceEEEEcHHHHhCCCCCccCCccccCccchhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhcc---CCCHHHHHHHHhhHHHhhcccccccCCCCHHHHHHHHHHH
Q psy2894 408 QFSS---DLDLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAI 451 (515)
Q Consensus 408 ~~g~---~ld~~~~~~l~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~ 451 (515)
++|. +.|+.++++++++++|++||+|+.++++++++++..|..+
T Consensus 385 ~~g~y~~g~d~~~d~ai~~~~~i~~fL~Q~~~e~~~~~~~~~~l~~~ 431 (434)
T PRK07196 385 PLGGYVAGADPMADQAVHYYPAITQFLRQEVGHPALFSASVEQLTGM 431 (434)
T ss_pred HhcCCCCCCCHHHHHHHHhHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 9995 8999999999999999999999999999999999999865
No 37
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1.8e-103 Score=830.81 Aligned_cols=417 Identities=22% Similarity=0.305 Sum_probs=397.4
Q ss_pred ccCccCccceeEEEEEECcEEEEEecCCCcccCEEEEc--CC-----ceEEEEEEeCCeEEEEEeCCCCCCCCCCEEEEc
Q psy2894 19 FNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFP--GN-----VFGLALNLERDSIGAVILGKYEHITEGDIVKCT 91 (515)
Q Consensus 19 ~~~~~~~~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~--~~-----~~g~V~~l~~~~v~~~~~~~~~gi~~G~~V~~t 91 (515)
++.....+.+|+|++|.|.++++.| +.+++||+|.+. ++ +.++|++++++.+.+++|+++.||+.|++|.++
T Consensus 19 ~~~~~~~~~~G~v~~v~g~~v~~~g-~~~~iG~~c~i~~~~~~~~~~~~~eVvg~~~~~~~l~~~~~~~gi~~g~~v~~~ 97 (455)
T PRK07960 19 MAQLPAVRRYGRLTRATGLVLEATG-LQLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVEGILPGARVYAR 97 (455)
T ss_pred HhcCCccccccEEEEEEEEEEEEeC-CCCCCCCEEEEEeCCCccccceeeeEEEecCCEEEEEECCCccCCCCCCEEEEC
Confidence 3334677889999999999999999 589999999983 33 678999999999999999999999999999999
Q ss_pred -------CCccccccCccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCcc
Q psy2894 92 -------GRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQR 164 (515)
Q Consensus 92 -------g~~~~vpvg~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr 164 (515)
|++++||||++|||||+|++|+|||+++++....++|++.+||+|++|.++++|++||||+||.|+|+++|||
T Consensus 98 ~~~~~~~~~~~~v~vg~~llGRvid~~G~piDg~~~~~~~~~~~i~~~~~~p~~R~~i~e~l~TGiraID~ll~I~~Gqr 177 (455)
T PRK07960 98 NISGEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPAPDTGETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQR 177 (455)
T ss_pred CcccccCCCceEEECCcccccCEECCCccccCCCCCCCCCccccccCCCcChHHhcccccchhccceeeeecccccCCcE
Confidence 9999999999999999999999999998887667789999999999999999999999999999999999999
Q ss_pred eeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhh
Q psy2894 165 ELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCT 244 (515)
Q Consensus 165 ~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~ 244 (515)
++|||++|+|||+| +.+|+++.+.++ +|+++||+|++|+.+|++++.+.+.+++++||++++|+||.+|++++|+|+|
T Consensus 178 i~I~G~sG~GKTTL-L~~Ia~~~~~d~-iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~ad~~~~~r~~~~~~a~t 255 (455)
T PRK07960 178 MGLFAGSGVGKSVL-LGMMARYTQADV-IVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATR 255 (455)
T ss_pred EEEECCCCCCccHH-HHHHhCCCCCCE-EEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECCCCCHHHHHHHHHHHHH
Confidence 99999999999999 699999988886 5778999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCce
Q psy2894 245 IGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSL 324 (515)
Q Consensus 245 iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSi 324 (515)
+||||||+|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||+... .+|||
T Consensus 256 iAEyfrd~G~~Vll~~DslTr~A~A~rEisl~~ge~P~~~gypp~~f~~l~~l~ERag~~~~-------------~~GSI 322 (455)
T PRK07960 256 IAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIS-------------GGGSI 322 (455)
T ss_pred HHHHHHHcCCCeEEEecchhHHHHHHHHHHHhcCCCCccccCCcchhhhhhHHHHHHhcCCC-------------CCeee
Confidence 99999999999999999999999999999999999999999999999999999999998521 38999
Q ss_pred eeeeEEeecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHHHhhHHHH
Q psy2894 325 TAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELA 404 (515)
Q Consensus 325 T~l~~v~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~la~y~el~ 404 (515)
|+||+|++++||++|||||+++||+||||+|||+||++||||||||+.|+||+++.+..+.|++.+..+|++|+.|++++
T Consensus 323 T~i~tVlv~~dD~~dpi~d~~~~i~dg~ivLsr~la~~g~yPAID~l~S~SR~~~~~~~~~~~~~~~~~r~~l~~Y~~~~ 402 (455)
T PRK07960 323 TAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALIDEQHYARVRQFKQLLSSFQRNR 402 (455)
T ss_pred eeEEEEEEcCCCCCcchHHHhhhhcceEEEECHHHHhCCCCCccCcCcccCcCccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc---cCCCHHHHHHHHhhHHHhhcccccccCCCCHHHHHHHHHHH
Q psy2894 405 AFSQFS---SDLDLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAI 451 (515)
Q Consensus 405 ~~~~~g---~~ld~~~~~~l~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~ 451 (515)
+++++| .+.|+..++++.+.++|++||+|+.++..++++++..|..+
T Consensus 403 dli~ig~y~~G~d~~~D~ai~~~~~i~~fl~Q~~~e~~~~~~~~~~l~~~ 452 (455)
T PRK07960 403 DLVSVGAYAKGSDPMLDKAIALWPQLEAFLQQGIFERADWEDSLQALERI 452 (455)
T ss_pred HHHHhcCccCCCCHHHHHHHHhHHHHHHHhCCCCCCCcCHHHHHHHHHHh
Confidence 999998 47899999999999999999999999999999999999765
No 38
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=100.00 E-value=8e-103 Score=829.38 Aligned_cols=410 Identities=28% Similarity=0.432 Sum_probs=394.9
Q ss_pred ccceeEEEEEECcEEEEEecCCCcccCEEEEcC----CceEEEEEEeCCeEEEEEeCCCCCCCCCCEEEEcCCccccccC
Q psy2894 25 IYNQGKVISVFDGICQIYGLSNAMQGEMLEFPG----NVFGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIG 100 (515)
Q Consensus 25 ~~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~~----~~~g~V~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvg 100 (515)
.+.+|+|++|.|++++|.+ +++.+||+|.|.+ ++.|+|++++++++.+++|+++.||+.|++|.+||++++||||
T Consensus 3 ~~~~G~V~~v~g~~v~v~~-~~~~~ge~~~i~~~~~~~~~~eVi~~~~~~~~l~~~~~~~gl~~G~~V~~tg~~~~v~vg 81 (422)
T TIGR02546 3 VRVRGRVTEVSGTLLKAVL-PGARVGELCLIRRRDPSQLLAEVVGFTGDEALLSPLGELHGISPGSEVIPTGRPLSIRVG 81 (422)
T ss_pred cceeEEEEEEECcEEEEEE-CCCCCCCEEEEeeCCCCeEEEEEEEEcCCcEEEEEccCccCCCCCCEEEECCCCceEEeC
Confidence 4678999999999999996 7899999999952 3789999999999999999999999999999999999999999
Q ss_pred ccccceEecccCCcCCCCCCCCccc--ccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCccHH
Q psy2894 101 PELCGRVINALGDPIDGKGPIKTKL--TAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSI 178 (515)
Q Consensus 101 ~~lLGrViD~lG~pid~~~~~~~~~--~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GKt~l 178 (515)
++|||||+|++|+|||+++++.... ++|++..||++++|.++++|+.||+++||.++|+++|||++|+|++|+|||+|
T Consensus 82 ~~lLGrViD~~G~plD~~~~~~~~~~~~~pi~~~~~~~~~R~~i~~~l~tG~~~id~l~~i~~Gq~~~I~G~sG~GKStL 161 (422)
T TIGR02546 82 EALLGRVLDGFGRPLDGKGELPAGEIETRPLDADPPPPMSRQPIDQPLPTGVRAIDGLLTCGEGQRIGIFAGAGVGKSTL 161 (422)
T ss_pred hhhccCEeCCCCCcccCCCCCCCCCceeeeccCCCcCHHHccCcccccCCCceeehhhccccCCCEEEEECCCCCChHHH
Confidence 9999999999999999998876653 68999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEE
Q psy2894 179 AIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALV 258 (515)
Q Consensus 179 ~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vll 258 (515)
+.+|+++...+. ++|++||+|++|+.+|++.....+++++|++|++++++|+..|+++||+|+++|||||++|+|||+
T Consensus 162 -l~~I~~~~~~~~-~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~~~~~a~~~AE~f~~~g~~Vl~ 239 (422)
T TIGR02546 162 -LGMIARGASADV-NVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKAAYTATAIAEYFRDQGKRVLL 239 (422)
T ss_pred -HHHHhCCCCCCE-EEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHHHHHHHHHHHHHHHHCCCcEEE
Confidence 799999888875 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEeecCCCCC
Q psy2894 259 VYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDIS 338 (515)
Q Consensus 259 i~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~~~~D~s 338 (515)
++||+||||+|+||||+++||||+++||||++|+.|++|+||||+. .+||||+||+|++++||++
T Consensus 240 ~~Dsltr~a~A~rei~l~~ge~P~~~gyp~~~f~~l~~l~ERag~~---------------~~GSIT~~~tv~~~~dd~~ 304 (422)
T TIGR02546 240 MMDSLTRFARALREIGLAAGEPPARGGYPPSVFSSLPRLLERAGNG---------------EKGSITALYTVLVEGDDMN 304 (422)
T ss_pred EEeCchHHHHHHHHHHHhcCCCCcccccChhHHHHhHHHHHHhcCC---------------CCCceeEEEEEeccCCCCC
Confidence 9999999999999999999999999999999999999999999973 3899999999999999999
Q ss_pred CcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHHHhhHHHHHHHHhcc---CCCH
Q psy2894 339 AFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSS---DLDL 415 (515)
Q Consensus 339 ~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~la~y~el~~~~~~g~---~ld~ 415 (515)
|||||+++|||||||+|||+||++||||||||+.|+||++++++.++|++++.++|++|++|+|+++|+++|+ +.|+
T Consensus 305 ~pi~~~~~~i~dg~i~Lsr~la~~g~yPAId~~~S~SR~~~~~~~~~~~~~a~~~~~~l~~y~e~~~li~~g~y~~g~d~ 384 (422)
T TIGR02546 305 DPIADEVRSILDGHIVLSRALAERNHYPAIDVLASLSRVMSQVVSTEHRRAAGKLRRLLATYKEVELLIRLGEYQPGSDP 384 (422)
T ss_pred CCchhhhhccccEEEEEcHHHHhCCCCCccCCccccccchhhhCCHHHHHHHHHHHHHHHhhHHHHHHHHhcCCcCCCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999995 8999
Q ss_pred HHHHHHHhhHHHhhcccccccCCCCHHHHHHHHHHHh
Q psy2894 416 VTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAIN 452 (515)
Q Consensus 416 ~~~~~l~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~~ 452 (515)
++++++.++++|++||+|++++++++++++..|+++.
T Consensus 385 ~~d~~i~~~~~i~~fl~Q~~~~~~~~~~~~~~l~~~~ 421 (422)
T TIGR02546 385 ETDDAIDKIDAIRAFLRQSTDEYSPYEETLEQLHALV 421 (422)
T ss_pred HHHHHHHhHHHHHHHhCCCCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999763
No 39
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=100.00 E-value=9.5e-101 Score=815.59 Aligned_cols=426 Identities=25% Similarity=0.380 Sum_probs=399.5
Q ss_pred HHHHHHHHHHcccCccCccceeEEEEEECcEEEEEecCCCcccCEEEEc----CC-ceEEEEEEeCCeEEEEEeCCCCCC
Q psy2894 8 ISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFP----GN-VFGLALNLERDSIGAVILGKYEHI 82 (515)
Q Consensus 8 ~~~~l~~~i~~~~~~~~~~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~----~~-~~g~V~~l~~~~v~~~~~~~~~gi 82 (515)
|...+....++.......+.+|+|++|.|.++++.| +.+.+||+|+|. ++ +.|+|++++++.+.+++|+++.||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~G~v~~i~G~~v~~~~-~~~~~ge~~~i~~~~~~~~~~~eVi~~~~~~v~l~~~~~t~gl 82 (440)
T TIGR01026 4 NLTTFYNRLCQEMDLRLVKRVGRVTKVKGLLIEAVG-PQASVGDLCLIERRGSEGRLVAEVVGFNGEFVFLMPYEEVEGV 82 (440)
T ss_pred hhhhHHHHHHhhhcCCccceeeEEEEEEeeEEEEEc-CCCCcCCEEEEeecCCCCcEEEEEEEecCCEEEEEEccCCcCC
Confidence 333344444444334667899999999999999998 689999999995 33 789999999999999999999999
Q ss_pred CCCCEEEEcCCccccccCccccceEecccCCcCCCCC-CCCcccccccccCCCCccccCCCccccccccccccccccccC
Q psy2894 83 TEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKG-PIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGK 161 (515)
Q Consensus 83 ~~G~~V~~tg~~~~vpvg~~lLGrViD~lG~pid~~~-~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigr 161 (515)
++|++|.+||++++||||++|||||+|++|+|||+.+ ++....++|++..||+|++|.++++|+.||+++||.++||++
T Consensus 83 ~~G~~V~~tg~~~~v~vg~~llGRVid~~G~plD~~~~~~~~~~~~~i~~~~~~p~~R~~~~e~l~TGi~~iD~l~~i~~ 162 (440)
T TIGR01026 83 RPGSKVLATGEGLSIKVGDGLLGRVLDGLGKPIDGKGKFLDNVETEGLITAPINPLKRAPIREILSTGVRSIDGLLTVGK 162 (440)
T ss_pred CCCCEEEeCCCccEEEcChhhhhceecCCCcccCCCCCCCCCccccccccCCCChHHccCccccccceeeeeeeccccCC
Confidence 9999999999999999999999999999999999988 665556679999999999999999999999999999999999
Q ss_pred CcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhh
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYS 241 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~ 241 (515)
|||++|+|++|+|||+| +.+|+++...++ .+|+++|+|++|+.+|++++...+.|+||++|++++|+||.+|+++||+
T Consensus 163 Gq~~~I~G~sG~GKStL-l~~I~~~~~~~~-~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~~p~~r~~~~~~ 240 (440)
T TIGR01026 163 GQRIGIFAGSGVGKSTL-LGMIARNTEADV-NVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLKGAYV 240 (440)
T ss_pred CcEEEEECCCCCCHHHH-HHHHhCCCCCCE-EEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHHHH
Confidence 99999999999999999 699999888886 5889999999999999999888888999999999999999999999999
Q ss_pred hhhhHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCC
Q psy2894 242 GCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKT 321 (515)
Q Consensus 242 a~~iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~ 321 (515)
|+|+||||||+|+|||+++||+||||+|+||||+++||||+++||||++|+.+++|+||||. .+ +
T Consensus 241 a~t~AE~frd~G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gypp~~~~~l~~l~ERag~--------------~~-~ 305 (440)
T TIGR01026 241 ATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSVFSTLPRLLERAGA--------------SG-K 305 (440)
T ss_pred HHHHHHHHHHCCCCEEEEEeChHHHHHHHHHHHHhcCCCCcccccChhHHHHHHHHHHHhcc--------------CC-C
Confidence 99999999999999999999999999999999999999999999999999999999999995 33 8
Q ss_pred CceeeeeEEeecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHHHhhH
Q psy2894 322 GSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYR 401 (515)
Q Consensus 322 GSiT~l~~v~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~la~y~ 401 (515)
||||+||+|+++++|++|||+|++++|+||||+|||+||++||||||||+.|+||+|+.++.+.|++++.++|+.|++|+
T Consensus 306 GSIT~i~tVl~~~~d~~dpi~d~~~~i~dG~ivLsr~la~~~~~PAId~~~S~SR~~~~~~~~~~~~~a~~~r~~l~~y~ 385 (440)
T TIGR01026 306 GSITAFYTVLVEGDDMNEPIADSVRGILDGHIVLSRALAQRGHYPAIDVLASISRLMTAIVSEEHRRAARKFRELLSKYK 385 (440)
T ss_pred CeeeEEEEEEccCcCCCcchhhhhccccceEEEEecchhhCCccCccCCCcccccCccccCCHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcc---CCCHHHHHHHHhhHHHhhcccccccCCCCHHHHHHHHHHH
Q psy2894 402 ELAAFSQFSS---DLDLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAI 451 (515)
Q Consensus 402 el~~~~~~g~---~ld~~~~~~l~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~ 451 (515)
|+++|+++|. +.|++.+.++.++++|++||+|+.++++++++++..|..+
T Consensus 386 e~~~li~ig~y~~g~d~~~d~~i~~~~~i~~fL~Q~~~~~~~~~~~~~~l~~~ 438 (440)
T TIGR01026 386 DNEDLIRIGAYQRGSDRELDFAIAKYPKLERFLKQGINEKVNFEESLQQLEEI 438 (440)
T ss_pred HHHHHHHhhccccCCCHHHHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHh
Confidence 9999999983 5689999999999999999999999999999999998765
No 40
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=4.5e-99 Score=797.60 Aligned_cols=411 Identities=24% Similarity=0.316 Sum_probs=389.8
Q ss_pred ccCccceeEEEEEECcEEEEEecCCCcccCEEEE-cCCceEEEEEEeCCeEEEEEeCCCCCCCCCCEEEEcCCccccccC
Q psy2894 22 TTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEF-PGNVFGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIG 100 (515)
Q Consensus 22 ~~~~~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~-~~~~~g~V~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvg 100 (515)
....+.+|+|++|.|.++++.| +++.+||+|+| .++..|+|++++++.+.+++|+++.||++|++|.+||++++||||
T Consensus 16 ~~~~~~~g~v~~~~g~~~~~~g-~~~~ige~~~i~~~~~~~eV~~~~~~~~~~~~~~~~~gi~~g~~v~~~~~~~~v~vg 94 (432)
T PRK06793 16 TPFYTKVGKVHSVQEQFFVAKG-PKAKIGDVCFVGEHNVLCEVIAIEKENNMLLPFEQTEKVCYGDSVTLIAEDVVIPRG 94 (432)
T ss_pred CCccceeeEEEEEEEEEEEEEc-CCCCcCCEEEECCCCEEEEEEEecCCcEEEEEccCccCCCCCCEEEECCCccEEEcC
Confidence 3567889999999999999999 69999999999 455889999999999999999999999999999999999999999
Q ss_pred ccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCccHHHH
Q psy2894 101 PELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAI 180 (515)
Q Consensus 101 ~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GKt~l~~ 180 (515)
++|||||+|++|+|+|+++++...+++|++.++|+|++|.++++|+.||+++||.++|+++|||++|||++|+|||+| +
T Consensus 95 ~~~lGrV~d~~G~piD~~~~~~~~~~~~i~~~~~~~~~r~~i~~~l~TGiraID~ll~I~~Gqri~I~G~sG~GKTtL-l 173 (432)
T PRK06793 95 NHLLGKVLSANGEVLNEEAENIPLQKIKLDAPPIHAFEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVGKSTL-L 173 (432)
T ss_pred HhhccCEECcCCccCCCCCCCCCcccccccCCCCCchheechhhccCCCCEEEeccceecCCcEEEEECCCCCChHHH-H
Confidence 999999999999999998776666678999999999999999999999999999999999999999999999999999 6
Q ss_pred HHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEE
Q psy2894 181 DIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVY 260 (515)
Q Consensus 181 ~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~ 260 (515)
.+|+.+...+. .+++++|||++||.+|++...+...|+||++|++|+|+||.+|+++||+|+++||||||+|+|||+++
T Consensus 174 ~~Ia~~~~~~~-gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlil 252 (432)
T PRK06793 174 GMIAKNAKADI-NVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMM 252 (432)
T ss_pred HHHhccCCCCe-EEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEe
Confidence 88888777765 47789999999999999865444459999999999999999999999999999999999999999999
Q ss_pred echhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEeecCCCCCCc
Q psy2894 261 DDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAF 340 (515)
Q Consensus 261 Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~~~~D~s~p 340 (515)
||+||||+|+|||+++++|||+. |||+++|+.|++|+||||++ .+||||++|+|++++||++||
T Consensus 253 DslTr~a~A~reisl~~~e~p~~-G~~~~~~s~l~~L~ERag~~---------------~~GSiT~~~tvlv~~dD~~dp 316 (432)
T PRK06793 253 DSVTRFADARRSVDIAVKELPIG-GKTLLMESYMKKLLERSGKT---------------QKGSITGIYTVLVDGDDLNGP 316 (432)
T ss_pred cchHHHHHHHHHHHHHhcCCCCC-CeeeeeeccchhHHHHhccC---------------CCcceEEEEEEEecCCCCCCc
Confidence 99999999999999999999986 99999999999999999985 389999999999999999999
Q ss_pred ccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHHHhhHHHHHHHHhc---cCCCHHH
Q psy2894 341 VPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFS---SDLDLVT 417 (515)
Q Consensus 341 I~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~la~y~el~~~~~~g---~~ld~~~ 417 (515)
|||+++|||||||||||+||++||||||||+.|+||+|+.++.+.|+++|..+|++|++|+|+++|+++| .+-|++.
T Consensus 317 I~d~~~si~DG~ivLsr~la~~g~~PAIDv~~S~SR~~~~~~~~~~~~~a~~~r~~la~y~e~e~~i~~g~y~~g~~~~~ 396 (432)
T PRK06793 317 VPDLARGILDGHIVLKRELATLSHYPAISVLDSVSRIMEEIVSPNHWQLANEMRKILSIYKENELYFKLGTIQENAENAY 396 (432)
T ss_pred chHHhhhhcceEEEEcHHHHhCCCCCccCCCcccCcCccccCCHHHHHHHHHHHHHHHhChHHHHHHHhCCccCCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 4789999
Q ss_pred HHHHH-hhHHHhhcccccccCCCCHHHHHHHHHHH
Q psy2894 418 RKQLD-RGARVTELLKQKQYSPLPVSLIAVILFAI 451 (515)
Q Consensus 418 ~~~l~-~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~ 451 (515)
+.++. ++++|++||+|+.++++++++++..|..+
T Consensus 397 d~ai~~~~~~i~~fl~Q~~~~~~~~~~~~~~l~~~ 431 (432)
T PRK06793 397 IFECKNKVEGINTFLKQGRSDSFQFDDIVEAMHHI 431 (432)
T ss_pred HHHHHHhHHHHHHHhCCCCCCCCCHHHHHHHHHhh
Confidence 99999 99999999999999999999999998754
No 41
>PRK06315 type III secretion system ATPase; Provisional
Probab=100.00 E-value=1.6e-97 Score=787.74 Aligned_cols=428 Identities=26% Similarity=0.378 Sum_probs=395.5
Q ss_pred HHHHHHHHHHHcccCccCccceeEEEEEECcEEEEEecCCCcccCEEEEc-CC---ceEEEEEEeCCeEEEEEeCCCCCC
Q psy2894 7 EISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFP-GN---VFGLALNLERDSIGAVILGKYEHI 82 (515)
Q Consensus 7 ~~~~~l~~~i~~~~~~~~~~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~-~~---~~g~V~~l~~~~v~~~~~~~~~gi 82 (515)
|+..-+......++.....+.+|+|++|.|.++++.| +.+.+||+|.+. ++ ..|||++++++.+.+++|+++.||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~G~v~~i~g~~~~~~~-~~~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi 81 (442)
T PRK06315 3 EITTDFDTLMSELPDVQLTTVVGRITEVVGMLIKAVV-PDVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGV 81 (442)
T ss_pred chHHHHHHHHHHHhcCCcceeccEEEEEECCEEEEEE-CCcccCCEEEEecCCCCEEEEEEEEEcCCeEEEEEccCCcCC
Confidence 4443333333334444677889999999999999998 579999999994 23 789999999999999999999999
Q ss_pred CCCCEEEEcCCccccccCccccceEecccCCcCCC--CCCCC-cccccccccCCCCccccCCCccccccccccccccccc
Q psy2894 83 TEGDIVKCTGRILEVPIGPELCGRVINALGDPIDG--KGPIK-TKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPI 159 (515)
Q Consensus 83 ~~G~~V~~tg~~~~vpvg~~lLGrViD~lG~pid~--~~~~~-~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pi 159 (515)
++|++|.+||++++||||++|||||+|++|+|||+ ++++. ..+++|++..||+|++|.++++||+||||+||.++|+
T Consensus 82 ~~g~~V~~~g~~~~v~vg~~llGrv~d~~G~pld~~~~~~~~~~~~~~~i~~~~~~~~~R~~~~e~l~TGi~aID~~l~i 161 (442)
T PRK06315 82 SPSSEVIPTGLPLHIRAGNGLLGRVLNGLGEPIDTETKGPLENVDETYPIFRAPPDPLHRAKLRTILSTGVRCIDGMLTV 161 (442)
T ss_pred CCCCEEEeCCCccEEEecccccCCEEeccCcccccccCCCcccccceeeeecCCCChHHcccccccccceEEEEeccccc
Confidence 99999999999999999999999999999999998 77765 4456899999999999999999999999999999999
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHhc-CCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHH
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQK-NKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFIS 238 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~~-~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a 238 (515)
++|||++|+|++|+|||+| +.+|+++. ..++ .|+++||||++|+.+|.+.......++++++|++|++++|..|+.+
T Consensus 162 ~~Gq~i~I~G~sG~GKStL-l~~I~~~~~~~~~-~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q~p~~rlnp 239 (442)
T PRK06315 162 ARGQRIGIFAGAGVGKSSL-LGMIARNAEEADV-NVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQSSQLRLNA 239 (442)
T ss_pred cCCcEEEEECCCCCCcchH-HHHhhcccccCCc-eEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCCCHHHHhhH
Confidence 9999999999999999999 58888654 4554 5789999999999999997444456999999999999999999999
Q ss_pred HhhhhhhHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCccc
Q psy2894 239 AYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVT 318 (515)
Q Consensus 239 ~~~a~~iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~ 318 (515)
+|+|+++|||||++|++||+++||+||||+|+|||++++|+||++++|||++|+.|++|+||||+.
T Consensus 240 ~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS~l~~llERag~~-------------- 305 (442)
T PRK06315 240 AYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERSGAS-------------- 305 (442)
T ss_pred HHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhhHhHHHHHHhcCC--------------
Confidence 999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred CCCCceeeeeEEeecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHHH
Q psy2894 319 GKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLA 398 (515)
Q Consensus 319 g~~GSiT~l~~v~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~la 398 (515)
.+||||+||+|++++||++|||||+++|||||||+|||+||++||||||||+.|+||+|++++.++|++++.++|++|+
T Consensus 306 -~~GSITai~tVl~~gdD~~dpi~d~~~~i~dg~ivLsr~la~~g~~Paidv~~S~SR~~~~~~~~~~~~~a~~~r~~l~ 384 (442)
T PRK06315 306 -DKGTITAFYTVLVAGDDMNEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVPEEQRRIIGKAREVLA 384 (442)
T ss_pred -CCcceeeeEEEEecCCCCCcccHHHhhhhcceEEEEeccHHHcCCCCCccchhhhcccchhcCCHHHHHHHHHHHHHHH
Confidence 3899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhcc---CCCHHHHHHHHhhHHHhhcccccccCCCCHHHHHHHHHHHh
Q psy2894 399 QYRELAAFSQFSS---DLDLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAIN 452 (515)
Q Consensus 399 ~y~el~~~~~~g~---~ld~~~~~~l~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~~ 452 (515)
+|+|+++|+++|. +.|++++++++++++|++||+|+.++++++++++..|..+.
T Consensus 385 ~y~e~e~li~~g~y~~g~d~~~d~ai~~~~~i~~fL~Q~~~e~~~~~~~~~~l~~~~ 441 (442)
T PRK06315 385 KYKANEMLIRIGEYRRGSDREVDFAIDHIDKLNRFLKQDIHEKTNYEEAAQQLRAIF 441 (442)
T ss_pred hhhhhHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHh
Confidence 9999999999995 89999999999999999999999999999999999987653
No 42
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=8.5e-97 Score=784.92 Aligned_cols=412 Identities=26% Similarity=0.408 Sum_probs=390.7
Q ss_pred cCccceeEEEEEECcEEEEEecCCCcccCEEEEc---C---CceEEEEEEeCCeEEEEEeCCCCCCCCCCEEEEcCCccc
Q psy2894 23 TEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFP---G---NVFGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILE 96 (515)
Q Consensus 23 ~~~~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~---~---~~~g~V~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~ 96 (515)
...+.+|+|++|.|.+++++| +.+.+||+|.+. + ...|||++++++++.+++|+++.||+.|++|.+||++++
T Consensus 14 ~~~~~~G~v~~i~G~~i~~~~-~~~~ige~~~i~~~~~~~~~~~~EVi~~~~~~~~l~~~~~~~gl~~g~~V~~tg~~~~ 92 (438)
T PRK07721 14 DPYKRYGKVSRVIGLMIESKG-PESSIGDVCYIHTKGGGDKAIKAEVVGFKDEHVLLMPYTEVAEIAPGCLVEATGKPLE 92 (438)
T ss_pred CccceecEEEEEECcEEEEEE-CCCCchheEEEEecCCCCceEEEEEEEEcCCEEEEEEccCccCCCCCCEEEECCCccE
Confidence 567889999999999999998 679999999993 2 278999999999999999999999999999999999999
Q ss_pred cccCccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCcc
Q psy2894 97 VPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKS 176 (515)
Q Consensus 97 vpvg~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GKt 176 (515)
||||++|||||+|++|+|||+.+......++|++..+|+|++|.++++|+.||+++||.++|+++||+++|+|++|+|||
T Consensus 93 v~vg~~llGRv~d~~G~plD~~~~~~~~~~~~i~~~~p~p~~R~~i~~~l~tg~~vid~l~~i~~Gq~i~I~G~sG~GKS 172 (438)
T PRK07721 93 VKVGSGLIGQVLDALGEPLDGSALPKGLAPVSTDQDPPNPLKRPPIREPMEVGVRAIDSLLTVGKGQRVGIFAGSGVGKS 172 (438)
T ss_pred EEechhhcCCEECcCCCccCCCCCCCccccCCccCCCCChhhccCcccccccchhhhheeeeecCCcEEEEECCCCCCHH
Confidence 99999999999999999999987544445679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcE
Q psy2894 177 SIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDA 256 (515)
Q Consensus 177 ~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~V 256 (515)
+| +.+|.++...+. .+++++|||++|+.+|+++......+.|+++|++|+|+||.+|+++||+|+|+||||||+|+||
T Consensus 173 tL-l~~I~~~~~~~~-gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~~~~a~~iAEyfr~~g~~V 250 (438)
T PRK07721 173 TL-MGMIARNTSADL-NVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGAYTATAIAEYFRDQGLNV 250 (438)
T ss_pred HH-HHHHhcccCCCe-EEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCcE
Confidence 99 689998877775 6889999999999999998666666999999999999999999999999999999999999999
Q ss_pred EEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEeecCCC
Q psy2894 257 LVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGD 336 (515)
Q Consensus 257 lli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~~~~D 336 (515)
|+++||+||||+|+||||+++||||+++||||++|+.+++|+||+++. .+||||+|+||+++++|
T Consensus 251 ll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~---------------~~GsIT~~~TVlv~~hd 315 (438)
T PRK07721 251 MLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTN---------------ASGSITAFYTVLVDGDD 315 (438)
T ss_pred EEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCC---------------CCCCeeeEEEEEEECCC
Confidence 999999999999999999999999999999999999999999999863 27999999999999999
Q ss_pred CCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHHHhhHHHHHHHHhcc---CC
Q psy2894 337 ISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSS---DL 413 (515)
Q Consensus 337 ~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~la~y~el~~~~~~g~---~l 413 (515)
+++||+|++++|+||||+||++|+++||||||||+.|+||+|+.++.++|+++|.++|++|++|+|+++|+++|. +-
T Consensus 316 m~e~i~d~v~~i~dG~Ivls~~la~~g~~PAIdv~~S~SR~~~~~~~~~~~~~a~~~r~~l~~y~e~~~li~~g~y~~g~ 395 (438)
T PRK07721 316 MNEPIADTVRGILDGHFVLDRQLANKGQYPAINVLKSVSRVMNHIVSPEHKEAANRFRELLSTYQNSEDLINIGAYKRGS 395 (438)
T ss_pred CCchhhhhEEEecCEEEEEeccHHHCCCCCccCCcccccccccccCCHHHHHHHHHHHHHHHHhHHHHHHHHhhCCcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999984 77
Q ss_pred CHHHHHHHHhhHHHhhcccccccCCCCHHHHHHHHHHHh
Q psy2894 414 DLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAIN 452 (515)
Q Consensus 414 d~~~~~~l~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~~ 452 (515)
|++.+.+++++++|++||+|+.+++.++++++..|+.+.
T Consensus 396 ~~~~d~a~~~~~~~~~fl~Q~~~~~~~~~~~~~~l~~~~ 434 (438)
T PRK07721 396 SREIDEAIQFYPQIISFLKQGTDEKATFEESIQALLSLF 434 (438)
T ss_pred CHHHHHHHHhHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999764
No 43
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=100.00 E-value=1.2e-94 Score=722.64 Aligned_cols=270 Identities=32% Similarity=0.487 Sum_probs=258.7
Q ss_pred ccccccCccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCC
Q psy2894 94 ILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQT 173 (515)
Q Consensus 94 ~~~vpvg~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~ 173 (515)
+++||||++|||||+|++|+|||+++++...+++|++.++|++++|.+++|||+||||+||+|+|||||||+||||++|+
T Consensus 1 ~~~Vpvg~~lLGRVvd~lG~piD~~~~~~~~~~~~i~~~ap~~~~R~~i~e~l~TGIkaID~l~pig~GQR~gIfgg~Gv 80 (276)
T cd01135 1 TLKVPVSEDMLGRIFNGSGKPIDGGPEILAEEYLDINGPPINPVARIYPEEMIQTGISAIDGMNTLVRGQKIPIFSGSGL 80 (276)
T ss_pred CcEEECChhhcCCEECCCCCCCCCCCCCCCCceeeccCCCcCchhcCCcccccccCcEeeecccccccCCEEEeecCCCC
Confidence 46899999999999999999999998887777889999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHhcC-----CCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHH
Q psy2894 174 GKSSIAIDIIINQKN-----KNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEY 248 (515)
Q Consensus 174 GKt~l~~~~i~~~~~-----~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~ 248 (515)
|||+| +.+|++|++ ...+|||++||||+|||++|++++.+.++|+||++|++|+|+||.+|+++||+|||+|||
T Consensus 81 GKt~L-~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a~~~a~aiAEy 159 (276)
T cd01135 81 PHNEL-AAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIITPRMALTTAEY 159 (276)
T ss_pred ChhHH-HHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 99999 567888865 245799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHc-CCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeee
Q psy2894 249 FRDH-GKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAI 327 (515)
Q Consensus 249 frd~-G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l 327 (515)
|||+ |+|||+++||+||||+|+||||+++||||+++|||||+|+.|++|+||||++ .+++||||+|
T Consensus 160 frd~~g~~VLl~~D~ltr~A~A~rEisl~~gepP~~~gyp~~vf~~~~~l~ERag~~-------------~~~~GSITa~ 226 (276)
T cd01135 160 LAYEKGKHVLVILTDMTNYAEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRV-------------EGRNGSITQI 226 (276)
T ss_pred HHhccCCeEEEEEcChhHHHHHHHHHHhccCCCCCccCcCccHHHHhhHHheecccC-------------CCCCeeEEEE
Confidence 9998 9999999999999999999999999999999999999999999999999997 2237999999
Q ss_pred eEEeecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCcccc
Q psy2894 328 PIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRV 377 (515)
Q Consensus 328 ~~v~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv 377 (515)
|+|++++||++||||||++|||||||||||+||++||||||||+.|+||+
T Consensus 227 ~~V~~~~dD~~dpi~~~~~si~DG~ivLsr~la~~g~~PAID~l~S~SR~ 276 (276)
T cd01135 227 PILTMPNDDITHPIPDLTGYITEGQIVLDRQLHNRGIYPPINVLPSLSRL 276 (276)
T ss_pred EEEEccCCCcCcchHHHHHhhcceEEEEcHHHHhCCCCCCcCCcccccCC
Confidence 99999999999999999999999999999999999999999999999996
No 44
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=100.00 E-value=5.9e-94 Score=717.61 Aligned_cols=273 Identities=72% Similarity=1.171 Sum_probs=265.8
Q ss_pred cccccCccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCC
Q psy2894 95 LEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTG 174 (515)
Q Consensus 95 ~~vpvg~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~G 174 (515)
++||||++|||||+|++|+|||+++++...++||++..+|++++|.++++||+||||+||+|+|||||||++|||++|+|
T Consensus 2 ~~vpvg~~lLGRvld~~G~piD~~~~~~~~~~~~i~~~~p~~~~R~~i~e~L~TGI~~ID~l~pigrGQr~~Ifg~~g~G 81 (274)
T cd01132 2 ADVPVGEALLGRVVDALGNPIDGKGPIETKERRPIESKAPGIIPRKSVNEPLQTGIKAIDAMIPIGRGQRELIIGDRQTG 81 (274)
T ss_pred eEEECCHhhCCCEEccCCCCccCCCCcCcCceeeccCCCCChhhcCCcccccccCCEEeeccCCcccCCEEEeeCCCCCC
Confidence 68999999999999999999999988877778999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCC
Q psy2894 175 KSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGK 254 (515)
Q Consensus 175 Kt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~ 254 (515)
||+|++++|+||++.|++|||++||||++||.+|++++++.++|+||++|++|+|+||.+|+++||+|||+||||||+|+
T Consensus 82 Kt~L~l~~i~~~~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~~~a~aiAE~fr~~G~ 161 (274)
T cd01132 82 KTAIAIDTIINQKGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYTGCAMGEYFMDNGK 161 (274)
T ss_pred ccHHHHHHHHHhcCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHHHHHHHHHHHHHHCCC
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEeecC
Q psy2894 255 DALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQA 334 (515)
Q Consensus 255 ~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~~~ 334 (515)
||||++||+||||+||||||+++||||+++||||++|+.|++|+||||+++.. .+ +||||+||+|++++
T Consensus 162 ~Vlvl~DslTr~A~A~rEisl~~ge~P~~~gYp~~~f~~~~~L~ERag~~~~~----------~~-~GSIT~i~~V~~~~ 230 (274)
T cd01132 162 HALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDE----------LG-GGSLTALPIIETQA 230 (274)
T ss_pred CEEEEEcChHHHHHHHHHHHHhcCCCCCCcCcCchHHHHhHHHHHHhhhccCC----------CC-CcceEEEEEEEcCC
Confidence 99999999999999999999999999999999999999999999999998542 34 89999999999999
Q ss_pred CCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccc
Q psy2894 335 GDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVG 378 (515)
Q Consensus 335 ~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~ 378 (515)
||++|||||+++|||||||+|||+||++||||||||+.|+||+|
T Consensus 231 dD~~~pi~~~~~~i~dg~ivLsr~la~~g~yPaId~l~S~SR~g 274 (274)
T cd01132 231 GDVSAYIPTNVISITDGQIFLETDLFNKGIRPAINVGLSVSRVG 274 (274)
T ss_pred CCcCcchHHHHHhhcCeEEEEcHHHHhCCCCCCcCCcccccCCC
Confidence 99999999999999999999999999999999999999999986
No 45
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=1.6e-89 Score=783.29 Aligned_cols=270 Identities=24% Similarity=0.284 Sum_probs=243.8
Q ss_pred CCCeEEEEEEecCChHHHHHHHHHHhh-------cCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEE
Q psy2894 188 NKNVTCIYVAIGQKISSIKKTANLLEK-------YGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVY 260 (515)
Q Consensus 188 ~~~~~~V~~~iGer~~ev~~~~~~l~~-------~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~ 260 (515)
++| +|||++||||++||+||++++.+ .++|+|||+|++|||+||++|+++||+|+||||||||+|+|||+++
T Consensus 681 ~ad-i~V~~~iGERg~Ev~e~l~~~~~l~~~~~g~~~m~rtvlv~~ts~~p~~~R~~s~y~a~tiAEyfrd~G~~Vll~~ 759 (1017)
T PRK14698 681 DAQ-VVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMA 759 (1017)
T ss_pred CCC-EEEEEeeccchHHHHHHHHHHHhhcccccCccccccEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 445 58999999999999999999954 7899999999999999999999999999999999999999999999
Q ss_pred echhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEeecCCCCCCc
Q psy2894 261 DDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAF 340 (515)
Q Consensus 261 Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~~~~D~s~p 340 (515)
||+||||+|+||||+++||||+++||||++|+.+++||||||++.+. +++ .+ +||||++|+|++++||++||
T Consensus 760 Ds~sR~A~A~REis~~l~e~P~~~gyP~~l~s~L~~~~ERaG~~~~l-----~~~--~~-~GSIT~i~~V~~~g~D~s~P 831 (1017)
T PRK14698 760 DSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTL-----GSD--YR-VGSVSVIGAVSPPGGDFSEP 831 (1017)
T ss_pred ccchHHHHHHHHHHHhcCCCCCCCCcCccHHHHHHHHHHhccCCccc-----CCC--CC-CcceEEEEEEECCCCCCCCc
Confidence 99999999999999999999999999999999999999999996321 111 23 79999999999999999999
Q ss_pred ccccccccCCeEEEecchhhcCCCcCccccCCCcccccccc-------chHHHHHHHHHHHHHHHhhHHHHHHHHh-cc-
Q psy2894 341 VPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAA-------QIKFIKKLSSNIRTDLAQYRELAAFSQF-SS- 411 (515)
Q Consensus 341 I~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~-------~~~~~~~~a~~lr~~la~y~el~~~~~~-g~- 411 (515)
||++++||+||||+|||+||++||||||||+.|+||+++.+ ..+.|++++.+++.+|++|+|+++|+++ |.
T Consensus 832 v~~~~~~i~dg~i~L~~~La~~g~~PAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~el~~~i~l~g~~ 911 (1017)
T PRK14698 832 VVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNVDPEWKAMRDKAMELLQKEAELQEIVRIVGPD 911 (1017)
T ss_pred HHHHHHHHhCcEEecCHHHHhCCCCCCcCcccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999877 5799999999999999999999999999 44
Q ss_pred CCCHHHHHHHHhhHHHh-hcccccccCC----CCHHHHHHHHHHHh------cCcc-cccchhHHHH
Q psy2894 412 DLDLVTRKQLDRGARVT-ELLKQKQYSP----LPVSLIAVILFAIN------KGFL-DDIEIKKILN 466 (515)
Q Consensus 412 ~ld~~~~~~l~~~~~i~-~~L~Q~~~~~----~~~~~~~~~l~~~~------~G~l-d~v~~~~v~~ 466 (515)
++++.++..+.+++.|+ .||+|+.|++ +++++|+..|+.+. ...+ .+++++++..
T Consensus 912 ~l~~~d~~~~~~~~~i~e~fL~Q~~~~~~d~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 978 (1017)
T PRK14698 912 ALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFYDKTMDAISRGVPLEEIAK 978 (1017)
T ss_pred CCCHHHHHHHHHhHHHHhccCCCCCCCccccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhc
Confidence 69999999999999997 5999999777 79999999987663 1222 4466777664
No 46
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=100.00 E-value=2.5e-90 Score=709.64 Aligned_cols=323 Identities=32% Similarity=0.538 Sum_probs=314.1
Q ss_pred ccccccCccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCC
Q psy2894 94 ILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQT 173 (515)
Q Consensus 94 ~~~vpvg~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~ 173 (515)
+++||||++|||||+|++|+|||+.+++...+++|++..+|++++|.++++|+.||+++||.++|+++|||++|+|++|+
T Consensus 1 ~~~v~vg~~~lGrv~d~~G~pid~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~tGi~aiD~l~~i~~Gqri~I~G~sG~ 80 (326)
T cd01136 1 PLSVPVGDALLGRVLDAFGEPLDGKGPLGKEVRYPLLRTPPNPLKRRPIDEVLPTGVRAIDGLLTVGKGQRLGIFAGSGV 80 (326)
T ss_pred CceeeCCcccccCEECCCCcccCCCCCCCCCccccccCCCcCHHHhccceeEcCCCcEEEeeeeEEcCCcEEEEECCCCC
Confidence 46899999999999999999999998877677889999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcC
Q psy2894 174 GKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHG 253 (515)
Q Consensus 174 GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G 253 (515)
|||+| +.+|+++...++ ++|++||+|++|+.+|++...+.++++||++|++|+|+||.+|+++||+|+++||||||+|
T Consensus 81 GKTtL-l~~Ia~~~~~~~-~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~~a~~~AEyfr~~g 158 (326)
T cd01136 81 GKSTL-LGMIARGTTADV-NVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAYTATAIAEYFRDQG 158 (326)
T ss_pred ChHHH-HHHHhCCCCCCE-EEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999 799999888886 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEeec
Q psy2894 254 KDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQ 333 (515)
Q Consensus 254 ~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~~ 333 (515)
+|||+++||+||||+|+||+++++||||+++||||++|+.|++|+||||++ .+||||+||+|+++
T Consensus 159 ~~Vll~~Dsltr~a~A~rei~~~~ge~p~~~gyp~~~~~~~~~l~ERag~~---------------~~GSIT~i~tv~~~ 223 (326)
T cd01136 159 KDVLLLMDSLTRFAMAQREIGLAAGEPPTTKGYPPSVFALLPRLLERAGNS---------------DKGSITAFYTVLVE 223 (326)
T ss_pred CCeEEEeccchHHHHHHHHHHHhcCCCCCcCCcChHHHHHhHHHHHHhcCC---------------CCCCeeeeeeeeec
Confidence 999999999999999999999999999999999999999999999999986 36999999999999
Q ss_pred CCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHHHhhHHHHHHHHhcc--
Q psy2894 334 AGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSS-- 411 (515)
Q Consensus 334 ~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~la~y~el~~~~~~g~-- 411 (515)
+||++||||++++||+||||+|||+||++|+||||||+.|+||+++.++.+.|++++.++|++|++|+|+++|+++|.
T Consensus 224 gdd~~dpi~~~~~~~~dg~ivL~r~la~~g~~PAid~~~S~SR~~~~~~~~~~~~~a~~~r~~l~~y~e~~~~i~~g~y~ 303 (326)
T cd01136 224 GDDLNEPIADAVRSILDGHIVLSRALAAAGHYPAIDVLKSISRLMNAVVTPEHKEAARKLRELLSAYQEVEDLIRIGAYK 303 (326)
T ss_pred CCCCCcchHHhhhhccceEEEEcCcHHHcCCCCCcccccccccCccccCCHHHHHHHHHHHHHHHHhHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -CCCHHHHHHHHhhHHHhhcccc
Q psy2894 412 -DLDLVTRKQLDRGARVTELLKQ 433 (515)
Q Consensus 412 -~ld~~~~~~l~~~~~i~~~L~Q 433 (515)
++|++++++++++++|++||+|
T Consensus 304 ~g~d~~~d~~i~~~~~i~~~l~Q 326 (326)
T cd01136 304 KGSDPEVDEAIKLLPKIEAFLKQ 326 (326)
T ss_pred CCCCHHHHHHHHhHHHHHHHhCC
Confidence 8999999999999999999998
No 47
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=100.00 E-value=3.5e-90 Score=691.72 Aligned_cols=271 Identities=30% Similarity=0.493 Sum_probs=257.8
Q ss_pred ccccccCccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCC
Q psy2894 94 ILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQT 173 (515)
Q Consensus 94 ~~~vpvg~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~ 173 (515)
+++||||++|||||+|++|+|||+++++...++||++.++|++++|.++++||+||||+||+|+|||||||++|||++|+
T Consensus 1 ~~~vpvg~~llGRv~d~~G~piD~~~~~~~~~~~~i~~~~p~~~~R~~~~e~L~TGIr~ID~l~pig~GQr~~If~~~G~ 80 (274)
T cd01133 1 PISVPVGPETLGRIFNVLGEPIDERGPIKTKKTWPIHREAPEFVEQSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGV 80 (274)
T ss_pred CcEEecChhhcCCEECCCCCccCCCCCCCccccccccCCCCCchhhcCcCcccccCceeeeccCCcccCCEEEEecCCCC
Confidence 46899999999999999999999998887777899999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHhc-CCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHc
Q psy2894 174 GKSSIAIDIIINQK-NKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDH 252 (515)
Q Consensus 174 GKt~l~~~~i~~~~-~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~ 252 (515)
|||+|+.+++.+++ +.+.+|||++||||++||++|++++.+.++|+||++|++|+|+||.+|+++||+|+++||||||+
T Consensus 81 GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~~a~~~AEyfr~~ 160 (274)
T cd01133 81 GKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVALTGLTMAEYFRDE 160 (274)
T ss_pred ChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999644444443 23446999999999999999999999999999999999999999999999999999999999998
Q ss_pred -CCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEe
Q psy2894 253 -GKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIE 331 (515)
Q Consensus 253 -G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~ 331 (515)
|+|||+++||+||||+|+||+|+++||||+++||||++|+.|++|+||||+. ++||||+||+|+
T Consensus 161 ~g~~Vl~~~Dsltr~a~A~reis~~~ge~p~~~gyp~~~f~~~~~l~ERag~~---------------~~GSiT~~~~v~ 225 (274)
T cd01133 161 EGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGALQERITST---------------KKGSITSVQAVY 225 (274)
T ss_pred cCCeEEEEEeChhHHHHHHHHHHHHcCCCCCCcCcCccHHHHHHHHHHHhcCC---------------CCcccceEEEEE
Confidence 9999999999999999999999999999999999999999999999999973 389999999999
Q ss_pred ecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCcccccc
Q psy2894 332 TQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGG 379 (515)
Q Consensus 332 ~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~ 379 (515)
+++||++|||||++++|+||||+|||+||++||||||||+.|+||+|.
T Consensus 226 ~~~dD~~dpi~~~~~~i~dg~ivLsr~la~~g~~PAId~~~S~SR~~~ 273 (274)
T cd01133 226 VPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRILD 273 (274)
T ss_pred ecCCCCCCchHHHHHHhcceEEEEcHHHHhCCCCCCcCCccchhcccC
Confidence 999999999999999999999999999999999999999999999985
No 48
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=9.8e-83 Score=644.92 Aligned_cols=422 Identities=25% Similarity=0.381 Sum_probs=389.6
Q ss_pred ceeEEEEEECcEEEEEecC---CCcccCEEEEcCC----c-eEEEEEEeCCeEEEEEeCCCCCCCCCCEEEEcCCccccc
Q psy2894 27 NQGKVISVFDGICQIYGLS---NAMQGEMLEFPGN----V-FGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVP 98 (515)
Q Consensus 27 ~~G~V~~I~g~iv~v~Gl~---~~~~gElv~~~~~----~-~g~V~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vp 98 (515)
..|+|++|.|+++.|+.-. -..++..+++.++ + +-....+.++.|..+.++.++|+..|+.|..||++.+||
T Consensus 2 ~~G~vvqv~g~VvdV~F~~~~~lP~I~naL~~~~~~~~~~~leV~q~lg~~~VR~Iam~~t~gl~rg~~v~dtg~pi~VP 81 (468)
T COG0055 2 NKGKVVQVIGPVVDVEFPEEDELPEIYNALEVQNGNQGTLVLEVAQHLGDNVVRTIAMGSTDGLVRGLEVIDTGKPISVP 81 (468)
T ss_pred CCceEEEEEeeEEEEEecCcccCchhhhhheeccCCcceEeeehHHHhCCCeEEEEEecCccCcccCcEEecCCCceEEe
Confidence 3699999999999998631 2457777777643 2 333456788899999999999999999999999999999
Q ss_pred cCccccceEecccCCcCCCCCCCCcc--cccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCcc
Q psy2894 99 IGPELCGRVINALGDPIDGKGPIKTK--LTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKS 176 (515)
Q Consensus 99 vg~~lLGrViD~lG~pid~~~~~~~~--~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GKt 176 (515)
||++.||||+|.+|+|||+.+|+... .+|++++.+|...+...-+|.|+||||+||.|+|+.||.++|+||++|+|||
T Consensus 82 VG~~~lgri~nvlG~~iD~~~~~~~~~~~~~~Ih~~~p~~~e~~~~~EIleTGIKVIDll~P~~kGgKiGLFGGAGVGKT 161 (468)
T COG0055 82 VGKGTLGRIFNVLGEPIDEKGPIKAEDFEKWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKT 161 (468)
T ss_pred cchhhcccchhccCCcccccCCCCccccceeeccCCCCchhhcccchhhhhhCceEEEEecccccCceeeeeccCCccce
Confidence 99999999999999999999999865 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-cCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHc-CC
Q psy2894 177 SIAIDIIINQ-KNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDH-GK 254 (515)
Q Consensus 177 ~l~~~~i~~~-~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~-G~ 254 (515)
++++++|.|- +..+.+.||+++|||.||-.++++++.+.|.+++|.+|...+|+||+.|++.+.+|+|+||||||+ |+
T Consensus 162 Vl~~ELI~Nia~~h~g~SVFaGvGERtREGndLy~Em~es~vl~ktalv~gQMNEpPGaR~RValtGlT~AEyfRD~~gq 241 (468)
T COG0055 162 VLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARMRVALTGLTMAEYFRDEEGQ 241 (468)
T ss_pred eeHHHHHHHHHHHcCCeEEEEeccccccchHHHHHHHHhcCCCCceeEEEeecCCCCcceeeehhhhhhHHHHhhcccCC
Confidence 9987777773 344556899999999999999999999999999999999999999999999999999999999995 99
Q ss_pred cEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEeecC
Q psy2894 255 DALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQA 334 (515)
Q Consensus 255 ~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~~~ 334 (515)
|||+++|++.||.+|.+|+|.+|||.|+..||.|.+-.....|.||-... +.||||.+.+|++|+
T Consensus 242 dVLlFIDNIfRftQAGsEVSalLGr~PSavGYQpTLatemg~lQERItst---------------k~GSITSiQavyvPa 306 (468)
T COG0055 242 DVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITST---------------KKGSITSVQAVYVPA 306 (468)
T ss_pred eEEEEehhhhHHhhcchHHHHHhccCccccccCchhHHHHHHHHHHHhcC---------------CCCceEEEEEEEecc
Confidence 99999999999999999999999999999999999999999999998764 379999999999999
Q ss_pred CCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccc-hHHHHHHHHHHHHHHHhhHHHHHHHH-hc-c
Q psy2894 335 GDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQ-IKFIKKLSSNIRTDLAQYRELAAFSQ-FS-S 411 (515)
Q Consensus 335 ~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~-~~~~~~~a~~lr~~la~y~el~~~~~-~g-~ 411 (515)
||++||-|-.+.+++|..++|||++|+.|+||||||+.|.||...... -++|+++|.+.+..|++|+||++++. +| .
T Consensus 307 DDlTDPapattFaHLDat~vLsR~ia~~GIyPAvDPL~StSr~l~p~ivGe~Hy~va~~vq~iLqrYkeLqDIIaILGmd 386 (468)
T COG0055 307 DDLTDPAPATTFAHLDATTVLSRQIAALGIYPAVDPLDSTSRALDPKIVGEEHYEVAREVQSILQRYKELQDIIAILGMD 386 (468)
T ss_pred ccCCCcchhhhhhhcccceeeeHhHHhcCCCcccCcccccccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 999999999999999999999999999999999999999999987654 59999999999999999999999988 57 6
Q ss_pred CCCHHHHHHHHhhHHHhhccccccc----------CCCCHHHHHHHHHHHhcCcccccchhH
Q psy2894 412 DLDLVTRKQLDRGARVTELLKQKQY----------SPLPVSLIAVILFAINKGFLDDIEIKK 463 (515)
Q Consensus 412 ~ld~~~~~~l~~~~~i~~~L~Q~~~----------~~~~~~~~~~~l~~~~~G~ld~v~~~~ 463 (515)
+|+++++..+.|+++|+.||.|+++ ..++++|++.....+..|-+|++|.+.
T Consensus 387 ELseedk~~V~rArki~~FlSQpF~vAE~FTg~pG~~V~l~dti~~fk~Il~G~yd~~pE~a 448 (468)
T COG0055 387 ELSEEDKLTVARARKIQRFLSQPFFVAEVFTGSPGKYVPLKDTIRGFKRILEGKYDHLPEQA 448 (468)
T ss_pred hcChhHHHHHHHHHHHHHHhcCcchhhheecCCCceeeeHHHHHHHHHHHhCCCcccCCHHH
Confidence 8999999999999999999999988 456899999999999999999998764
No 49
>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
Probab=100.00 E-value=1.5e-79 Score=626.92 Aligned_cols=433 Identities=24% Similarity=0.346 Sum_probs=408.4
Q ss_pred ccceeEEEEEECcEEEEEecCCCcccCEEEEc--CC--ceEEEEEEeCCeEEEEEeCCCCCCCCCCE-EEEcCCcccccc
Q psy2894 25 IYNQGKVISVFDGICQIYGLSNAMQGEMLEFP--GN--VFGLALNLERDSIGAVILGKYEHITEGDI-VKCTGRILEVPI 99 (515)
Q Consensus 25 ~~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~--~~--~~g~V~~l~~~~v~~~~~~~~~gi~~G~~-V~~tg~~~~vpv 99 (515)
..+|-+|++|.|+++.|++..++.+||+|++. +| ..|+|+.++.+.+.+++|+.++|+...+. |+++|+++.+||
T Consensus 4 ~~~Y~~i~~i~Gplv~ve~~eg~~y~E~v~i~~~~G~~r~gqVle~~~~~a~vQVfegT~Gl~~~~t~vrF~g~~l~i~v 83 (463)
T COG1156 4 VKEYTTISEIKGPLIIVEGVEGASYGELVEIETPDGEVRRGQVLEVRGDKAVVQVFEGTSGLDTKGTTVRFTGETLKIPV 83 (463)
T ss_pred cceeeeEEEeccceEEEecccCCCcceEEEEECCCCCeeeeeEeeccCceEEEEEeecccCCCCCCceEEEeCceEEEee
Confidence 46788999999999999999999999999996 44 58999999999999999999999997666 999999999999
Q ss_pred CccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCccHHH
Q psy2894 100 GPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIA 179 (515)
Q Consensus 100 g~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GKt~l~ 179 (515)
+++||||++|++|+|||+.+.+.++++.++...|.||..|..+.++++|||.+||+|+++.|||+..||.++|--...||
T Consensus 84 s~dllGRifnG~G~PiDggp~i~~e~~~dI~g~~~NP~aR~yP~efIqTgIsaIDg~NtLvrgQKlPIFSgSGlphN~La 163 (463)
T COG1156 84 SEDLLGRIFNGSGKPIDGGPEIVPEDRLDINGAPINPYARIYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNELA 163 (463)
T ss_pred cHHhhhhhhcCCCCcCCCCCcCCCCcccccCCCCCCchhhhChhhHhhcCccHHhhhhhhhcccccccccCCCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred HHHHHHhcC-----CCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHH-cC
Q psy2894 180 IDIIINQKN-----KNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRD-HG 253 (515)
Q Consensus 180 ~~~i~~~~~-----~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd-~G 253 (515)
..|++|+. .++-+||+++|-+.+|...|.+++++.|+++|++++.+.+|+|+.+|...|..|+|.||||+- ++
T Consensus 164 -aqIarQA~v~~~~e~favVfaamGit~eea~fF~~~fe~tGal~r~vlflnlA~dp~vEri~tPr~aLt~AEylA~e~~ 242 (463)
T COG1156 164 -AQIARQATVDGEEEEFAVVFAAMGITHEEALFFMDEFEETGALDRAVLFLNLADDPAVERIITPRMALTVAEYLAFEKD 242 (463)
T ss_pred -HHHHHhcccCCCccceeEEEeecCccHHHHHHHHHHHHhhhhhhhhHhhhhccCCCceeEecchhHHHHHHHHHhccCC
Confidence 88999964 345689999999999999999999999999999999999999999999999999999999995 69
Q ss_pred CcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEeec
Q psy2894 254 KDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQ 333 (515)
Q Consensus 254 ~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~~ 333 (515)
+|||+|+.|||.||+|.||||.+.++.||++||||++|+.++.+|||||++ .|++||||.+|+.++|
T Consensus 243 ~hVLVilTDMTnyceALREIsaareeVPgrRGYPGymYTdLatiYErAg~i-------------~g~~GSiTqipIlTMP 309 (463)
T COG1156 243 MHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRI-------------RGRKGSITQIPILTMP 309 (463)
T ss_pred ceEEEEEcchhHHHHHHHHHHhhhccCCCcCCCcchHHHHHHHHHHhhcee-------------ccCCCceEEEEeeecC
Confidence 999999999999999999999999999999999999999999999999998 5568999999999999
Q ss_pred CCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccc-----hHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy2894 334 AGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQ-----IKFIKKLSSNIRTDLAQYRELAAFSQ 408 (515)
Q Consensus 334 ~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~-----~~~~~~~a~~lr~~la~y~el~~~~~ 408 (515)
+||++|||||++..||.|||+|||+|.++|+||+||++.|.||+|.... -+.|+.++.++...||+.++++++..
T Consensus 310 ~DDITHPIPDlTGYITEGQivl~r~l~~~gIyPpi~vlpSLSRL~~~giG~g~TReDH~~~snql~a~YA~g~d~r~l~a 389 (463)
T COG1156 310 GDDITHPIPDLTGYITEGQIVLSRDLHRKGIYPPINVLPSLSRLMKDGIGEGKTREDHGDVSNQLYAAYAEGRDLRELVA 389 (463)
T ss_pred CCCcCCCCCcccceeccceEEEEhhcccCCcCCCccccccHHHHhhcccCCCccccccHHHHHHHHHHHhcchhHHHHHH
Confidence 9999999999999999999999999999999999999999999997653 37899999999999999999999988
Q ss_pred hc--cCCCHHHHHHHHhhHHHhh-cccccccCCCCHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHH
Q psy2894 409 FS--SDLDLVTRKQLDRGARVTE-LLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFM 475 (515)
Q Consensus 409 ~g--~~ld~~~~~~l~~~~~i~~-~L~Q~~~~~~~~~~~~~~l~~~~~G~ld~v~~~~v~~f~~~l~~~l 475 (515)
++ +.|++.+++.++.+..++. |++|..++..|+++++..-| .+|..+|.+++++...++++..
T Consensus 390 vvge~aLs~~D~~~l~F~d~FE~~fi~qg~~enrsieetLdlgW----~lL~~lp~~el~ri~~~~I~ky 455 (463)
T COG1156 390 VVGEEALSERDRKYLKFADLFEQRFIKQGRYENRSIEETLDLGW----ELLSILPESELTRIKPDLIDKY 455 (463)
T ss_pred HhhhhhcchhHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHhH----HHHHhCCHhHhccCCHHHHHHh
Confidence 75 6899999999999999985 99999999999999988877 7888888888888888887654
No 50
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=100.00 E-value=6.7e-80 Score=630.90 Aligned_cols=246 Identities=29% Similarity=0.382 Sum_probs=231.2
Q ss_pred CCcccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecC
Q psy2894 121 IKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQ 200 (515)
Q Consensus 121 ~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGe 200 (515)
+...+.||++.++|.+ +|.++++||.||||+||+|+||+||||++|||++|+|||+| +.+|++|++.|+ |||++|||
T Consensus 117 ~~~~~~~Pv~~~~P~~-~r~~~~~pL~TGirvID~l~Pi~kGqr~~I~G~~G~GKT~L-~~~Iak~~~~dv-vVyv~iGE 193 (369)
T cd01134 117 ITMVQKWPVRQPRPVK-EKLPPNEPLLTGQRVLDTLFPVVKGGTAAIPGPFGCGKTVI-QQSLSKYSNSDI-VIYVGCGE 193 (369)
T ss_pred cccceeeecccCCCcc-ccCCCCCchhccchhhhccccccCCCEEEEECCCCCChHHH-HHHHHhCCCCCE-EEEEEeCC
Confidence 3444568999999988 99999999999999999999999999999999999999999 589999999996 89999999
Q ss_pred ChHHHHHHHHHHh-------hcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHHHHHHHH
Q psy2894 201 KISSIKKTANLLE-------KYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQI 273 (515)
Q Consensus 201 r~~ev~~~~~~l~-------~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~A~rei 273 (515)
|++|+++|++++. +.++|+||++|++|+|+||.+|++++|+|+|+||||||+|+|||+++||+||||+|+|||
T Consensus 194 Rg~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts~~p~~~R~~s~yta~tiAEYfrd~G~dVll~~Ds~tR~A~A~REI 273 (369)
T cd01134 194 RGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYNVALMADSTSRWAEALREI 273 (369)
T ss_pred ChHHHHHHHHHHHhhccccccCCccceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcChhHHHHHHHHH
Confidence 9999999999976 468899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEeecCCCCCCcccccccccCCeEE
Q psy2894 274 SLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQI 353 (515)
Q Consensus 274 sl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~~~~D~s~pI~~~~~si~Dg~i 353 (515)
|++++|||+++||||++|+.+++||||||++.+. ++ . . ++||||++++|++++||++|||++++++|+||||
T Consensus 274 s~~l~E~P~~~GYP~yl~s~La~~yERAG~~~~~-----~~-~-~-~~GSIT~i~~V~~~g~D~sdPV~~~t~~i~dg~i 345 (369)
T cd01134 274 SGRLEEMPGEEGYPAYLGARLASFYERAGRVKCL-----GS-P-G-REGSVTIVGAVSPPGGDFSEPVTQATLRIVQVFW 345 (369)
T ss_pred HHhcCCCCCccCcCccHHHHHHHHHHhccccccc-----CC-C-C-CCccEEEEEEEEccCCCcCcchHHhhHhhcceEE
Confidence 9999999999999999999999999999998531 11 0 2 3799999999999999999999999999999999
Q ss_pred EecchhhcCCCcCccccCCCcccc
Q psy2894 354 FLDSSLFNSGIRPAINAGISVSRV 377 (515)
Q Consensus 354 ~L~r~La~~g~~PAIdv~~S~SRv 377 (515)
+|||+||++||||||||+.|+||+
T Consensus 346 ~Lsr~La~~g~yPAId~l~S~Sry 369 (369)
T cd01134 346 GLDKKLAQRRHFPSINWLISYSKY 369 (369)
T ss_pred EECHHHHhCCCCCCcCCcccccCC
Confidence 999999999999999999999996
No 51
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=100.00 E-value=7.1e-75 Score=607.04 Aligned_cols=411 Identities=25% Similarity=0.355 Sum_probs=371.9
Q ss_pred eeEEEEEECcEEEEEecCCCcccCEEEEc-CCceEEEEEEeCCeEEEEEeCCCCCCCCCCEEEEcCCccccccCccccce
Q psy2894 28 QGKVISVFDGICQIYGLSNAMQGEMLEFP-GNVFGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGR 106 (515)
Q Consensus 28 ~G~V~~I~g~iv~v~Gl~~~~~gElv~~~-~~~~g~V~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvg~~lLGr 106 (515)
.|+|.+|+|+++.++|+.++.+.|+|.++ .++.|||+.+++|++.+++|++|+||++|++|.+||++++|.+||+||+.
T Consensus 2 ~G~i~~isGp~V~a~gm~~~~my~~v~Vg~~~L~gEiI~i~gd~a~iQVyE~T~Gi~~Ge~V~~Tg~pLsvELGPGll~~ 81 (588)
T COG1155 2 MGKIIRISGPVVVAEGMEGAKMYDVVKVGEMGLIGEIIRIEGNRATIQVYEDTAGIRPGEKVENTGRPLSVELGPGLLKS 81 (588)
T ss_pred CceEEEEECCEEEEecCcCCceEEEEEEcCCceeEEEEEEeCCeEEEEEEeecCCCCCCCeeecCCCceEEEeCccHHhh
Confidence 59999999999999999999999999997 46999999999999999999999999999999999999999999999999
Q ss_pred EecccCCcCCCC--------------------------------------------------------------------
Q psy2894 107 VINALGDPIDGK-------------------------------------------------------------------- 118 (515)
Q Consensus 107 ViD~lG~pid~~-------------------------------------------------------------------- 118 (515)
|+|++.|||+..
T Consensus 82 IyDGiQrPL~~i~e~sg~Fi~RGv~~p~Ldr~~kW~F~P~~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~~i~ 161 (588)
T COG1155 82 IYDGIQRPLDVIKETSGDFIARGLNPPALDRKKKWDFVPAVKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVTWIA 161 (588)
T ss_pred hhhhccChHHHHHHHhhhHhhcCCCCCCCCcccccccccccccCCEeccCceEEEeccCCceEEEEeCCCCCceEEEEEe
Confidence 999999999610
Q ss_pred ------------------CC--CCcccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCccHH
Q psy2894 119 ------------------GP--IKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSI 178 (515)
Q Consensus 119 ------------------~~--~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GKt~l 178 (515)
+. +..-++||+..+.| ..++.++++||.||.|+||.|+|+.||+..+|.||+|+|||++
T Consensus 162 ~~G~ytv~d~ia~v~~~~g~~~~~m~~~WPVR~~rp-~~eKl~p~~Pl~TGqRviDt~FPvaKGGTaaiPGpFGsGKTV~ 240 (588)
T COG1155 162 EEGEYTVEDVIATVSTEGGEVDVQMMTTWPVRKARP-VKRKLPPEIPLVTGQRVIDTLFPVAKGGTAAVPGPFGSGKTVS 240 (588)
T ss_pred cCCCceeeEEEEEEecCCCeEEEEEEEeccccCCcc-ccccCCCCCcccccceeehhhcccccCccccccCCCCCCcEeh
Confidence 00 12234588877777 5899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhh-------cCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHH
Q psy2894 179 AIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEK-------YGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRD 251 (515)
Q Consensus 179 ~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~-------~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd 251 (515)
.++++...++|+ +||++||||++|++|++.++.+ ...|+||++|++|+++|.+.|+.+.|+|+|+||||||
T Consensus 241 -qh~laK~sdadi-VVyigCGERGNEmtevL~eFPeL~Dp~tg~~lm~RT~liaNTSnMPVAAREasIYtGiTiaEY~RD 318 (588)
T COG1155 241 -QHTLSKLADGDI-VIYVGCGERGNEMTEVLQEFPELKDPNTGQPLMDRTVLIANTSNMPVAAREASIYTGITIAEYYRD 318 (588)
T ss_pred -hhhhhhhccCCE-EEEEecCCccchHHHHHHhCccccCCCCCCcccceeeEeecCccchHHHhhhhhhhhhhHHHHHHh
Confidence 689999999996 6999999999999999999865 3579999999999999999999999999999999999
Q ss_pred cCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEe
Q psy2894 252 HGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIE 331 (515)
Q Consensus 252 ~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~ 331 (515)
+|+||+++.||.+|||+|.||||..++|+|+.+|||.++-+.++++|||||+..+. +++ . +.||+|++++|.
T Consensus 319 mGy~v~lmADSTSRWAEAlREisgRleEmPgeegyPaYL~srlA~fYERaG~v~~~-----~~~--~-r~GsvtV~gaVS 390 (588)
T COG1155 319 MGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGSRLAEFYERAGRVRLV-----SPE--E-RFGSITVIGAVS 390 (588)
T ss_pred hhhhhHHhhchHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHhcCeeeec-----CCC--c-ceEEEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999998542 111 1 259999999999
Q ss_pred ecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHH-------HHHHHHHHHHHhhHHHH
Q psy2894 332 TQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIK-------KLSSNIRTDLAQYRELA 404 (515)
Q Consensus 332 ~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~-------~~a~~lr~~la~y~el~ 404 (515)
.+|||||+|+..|+..|+--.|-||++||+++|||||||+.|+|.+-+....+..+ ++..+++..|.+-.+++
T Consensus 391 PpGGdfSEPVtq~Tlriv~vFw~Ld~~la~~rhfPaInwl~syS~Y~~~~~~~~~~~v~~~~~~~r~~a~~~Lq~e~elq 470 (588)
T COG1155 391 PPGGDFSEPVTQNTLRVVRVFWALDAALANRRHFPSINWLNSYSLYTEDLRSWYDENVSPEWGALRDQAMEILQRESELQ 470 (588)
T ss_pred CCCCCcCcccchheeeeeeeecccchhhhhcccCcccChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998766554443 44778888999999999
Q ss_pred HHHHh-c-cCCCHHHHHHHHhhHHHhh-cccccccCCC----CHHHHHHHHH
Q psy2894 405 AFSQF-S-SDLDLVTRKQLDRGARVTE-LLKQKQYSPL----PVSLIAVILF 449 (515)
Q Consensus 405 ~~~~~-g-~~ld~~~~~~l~~~~~i~~-~L~Q~~~~~~----~~~~~~~~l~ 449 (515)
.++++ | +++++.++.++..++.|++ ||+|+.|+++ ++..|..+|.
T Consensus 471 eiv~lVG~eal~e~~~~il~va~~ire~fLqQnafd~vD~~~~~~kq~~mm~ 522 (588)
T COG1155 471 EIVQLVGYDALPEKEKSILDVARIIREDFLQQNAFDEIDAYCSLRKQYLMLK 522 (588)
T ss_pred HHHHHhCccccchHHHHHHHHHHHHHHHHHhhcccCcccccCCHHHHHHHHH
Confidence 99996 5 6899999999999999986 9999999887 5566655553
No 52
>KOG1353|consensus
Probab=100.00 E-value=1.8e-75 Score=564.84 Aligned_cols=331 Identities=56% Similarity=0.878 Sum_probs=317.6
Q ss_pred HHHHHHHHHHcccCccCccceeEEEEEECcEEEEEecCCCcccCEEEEcCCceEEEEEEeCCeEEEEEeCCCCCCCCCCE
Q psy2894 8 ISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVFGLALNLERDSIGAVILGKYEHITEGDI 87 (515)
Q Consensus 8 ~~~~l~~~i~~~~~~~~~~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~~~~~g~V~~l~~~~v~~~~~~~~~gi~~G~~ 87 (515)
++++++++|..+.......+.|+|.+|+||+++|+||.+++.+|+++|.+|++|+.++++.+++++++|++..-+++|+.
T Consensus 1 ~SsI~EErI~~~~~~a~leEtgrVLsIGdGIArV~GL~nvQAeEmvEFssGlKgmalnle~~~vg~v~~g~d~~ikeg~~ 80 (340)
T KOG1353|consen 1 MSSIFEERIVGDNTSADLEETGRVLSIGDGIARVYGLTNVQAEEMVEFSSGLKGMALNLEGENVGVVVFGEDSLIKEGDT 80 (340)
T ss_pred CchHHHHHhhccccccchhhccceEEEcCceeeeecccccchHHHHhhhccccchhccccCCceEEEEEcCcceeccCce
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCccccccCccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCcceee
Q psy2894 88 VKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELI 167 (515)
Q Consensus 88 V~~tg~~~~vpvg~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I 167 (515)
|.+|+....||+|+.|+|||+|++|+||||+||+...+++ +..|.++.+|++||+|++|+++|||||||++|
T Consensus 81 VkrTgaIvDVpvg~~LlgrvvdAlGn~idgkG~i~~~~~~--------ii~r~Sv~epmqtg~KAvdslVpigRgqrELi 152 (340)
T KOG1353|consen 81 VKRTAAISDVPPLKALLGRVGCALGEPIDGNGKISAKERR--------IIPRASVDEPMQTGLKAVDSLVPIGRGQRELI 152 (340)
T ss_pred EEeeeeeeccCchHHHhhhhhhhhcCeecCCCCccccccc--------cccceeeechhhhhhhHhhceeeeccCceEEE
Confidence 9999999999999999999999999999999999876554 78899999999999999999999999999999
Q ss_pred ecCCCCCccHHHHHHHHHhcC--------CCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHH
Q psy2894 168 IGDRQTGKSSIAIDIIINQKN--------KNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISA 239 (515)
Q Consensus 168 ~g~~g~GKt~l~~~~i~~~~~--------~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~ 239 (515)
+|++++|||+|++++|+||+. ..++|||++||++.+.|+++++.|.++++|+||++|++|++
T Consensus 153 IgdRqTGkTsla~dTI~nqk~~N~~~~ekkKiyCvyvaigqkrStvaqlv~~l~~~~a~~y~ivv~atas---------- 222 (340)
T KOG1353|consen 153 IGDRQTGKTSLAIDTILNQKRGNECLDEKKKIYCVYVAIGQKRSTVAQLVQRLEEADAMEYSIVVAATAS---------- 222 (340)
T ss_pred eccccCCceeeeehhhhhhhhhcccccccceEEEEEEecccchhHHHHHHHHHHhcCCceEEEEEEeecc----------
Confidence 999999999999999999873 24899999999999999999999999999999999999976
Q ss_pred hhhhhhHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccC
Q psy2894 240 YSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTG 319 (515)
Q Consensus 240 ~~a~~iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g 319 (515)
T Consensus 223 -------------------------------------------------------------------------------- 222 (340)
T KOG1353|consen 223 -------------------------------------------------------------------------------- 222 (340)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCceeeeeEEeecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHHHh
Q psy2894 320 KTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQ 399 (515)
Q Consensus 320 ~~GSiT~l~~v~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~la~ 399 (515)
++||+++|||+|++|| ||||+|+.+||.+|++||||++.|+||+|+++|.++||++|+.+|+.|+|
T Consensus 223 -------------q~gdvsayiptnvisi-dgqi~l~t~lfy~girpainvg~svsrvgsaaq~kamkqvag~~klelaq 288 (340)
T KOG1353|consen 223 -------------QAGDVSAYIPTNVISI-DGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVAGSLKLELAQ 288 (340)
T ss_pred -------------cccceeeecccceeee-cchhHHHHHHHHhccchhheeeeEeeeccchHHHHHHHHHhhhhhhHHHH
Confidence 2347889999999999 99999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhccCCCHHHHHHHHhhHHHhhcccccccCCCCHHHHHHHHHH
Q psy2894 400 YRELAAFSQFSSDLDLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFA 450 (515)
Q Consensus 400 y~el~~~~~~g~~ld~~~~~~l~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~ 450 (515)
|+|++.|+|||+|||..+++.+.||.+++++|||++|.|+..|+|+..+|+
T Consensus 289 ~revaafaqfgsdlda~tq~~l~rg~rltellkq~qy~p~~~e~qv~~iy~ 339 (340)
T KOG1353|consen 289 YREVAAFAQFGSDLDAATQQLLNRGVRLTELLKQGQYAPLAIEEQVAVIYA 339 (340)
T ss_pred HHHHHHHHHhcccccHHHHHHHHhhhHHHHHHhcCCCCCcchhhheeeEec
Confidence 999999999999999999999999999999999999999999999987764
No 53
>KOG1351|consensus
Probab=100.00 E-value=9.5e-72 Score=549.21 Aligned_cols=441 Identities=24% Similarity=0.320 Sum_probs=403.5
Q ss_pred HHcccCccCccceeEEEEEECcEEEEEecCCCcccCEEEEc--CC--ceEEEEEEeCCeEEEEEeCCCCCCC-CCCEEEE
Q psy2894 16 IKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFP--GN--VFGLALNLERDSIGAVILGKYEHIT-EGDIVKC 90 (515)
Q Consensus 16 i~~~~~~~~~~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~--~~--~~g~V~~l~~~~v~~~~~~~~~gi~-~G~~V~~ 90 (515)
+++|... +.-.|-+|.+|.|+++.+......++.|+|.+. +| ..|+|+.+.++++.+++|+.++||. .-+.|.+
T Consensus 13 ~~~~~~~-prl~y~tv~gvngplvild~vkfp~y~eiv~ltlpdgt~r~gqvlev~g~kavvqvfegtsgid~k~t~~ef 91 (489)
T KOG1351|consen 13 IENYTTE-PRLTYRTVSGVNGPLVILDKVKFPKYAEIVNLTLPDGSVRSGQVLEVSGEKAVVQVFEGTSGIDAKKTTVEF 91 (489)
T ss_pred HhccccC-CceeEeeecccCCceEEEecccccchhhheEEecCCCCeecceEEEecCCeeEEEEeccccccccccceEEE
Confidence 4566543 345689999999999999988889999999874 66 4799999999999999999999998 5788999
Q ss_pred cCCccccccCccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCcceeeecC
Q psy2894 91 TGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGD 170 (515)
Q Consensus 91 tg~~~~vpvg~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~ 170 (515)
||+.+..||++++||||+|+.|+|||.++++.++++..+...|.||..|-.+.|+++|||.+||.|..|.|||++.||..
T Consensus 92 tg~~lr~pvsedmlgrifngsgkpid~gp~vl~edyldi~gqpinp~~riypeemiqtgis~idvmnsiargqkipifsa 171 (489)
T KOG1351|consen 92 TGEILRTPVSEDMLGRIFNGSGKPIDKGPPVLAEDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKIPIFSA 171 (489)
T ss_pred ecccccccccHHHhhhhhcCCCCccCCCCCcChHHhhccCCCcCCcccccChHHHHHhCchHHhhhhHHhccCccceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHhcC--------------CCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhH
Q psy2894 171 RQTGKSSIAIDIIINQKN--------------KNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQF 236 (515)
Q Consensus 171 ~g~GKt~l~~~~i~~~~~--------------~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~ 236 (515)
+|.....+| ..|.+|.+ .++-+||++.|-.-+..+.|.++++++|.|++++++.+-+++|..+|.
T Consensus 172 aglphneia-aqicrqaglvk~~~k~~~d~~~dnfaivfaamgvnmetarffk~dfeengsm~~v~lflnlandptieri 250 (489)
T KOG1351|consen 172 AGLPHNEIA-AQICRQAGLVKRPEKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLANDPTIERI 250 (489)
T ss_pred CCCChhHHH-HHHHHhcCccccCCcccccccccceeeeehhhcccHHHHHHHHhhHHhcCCccceEEEEecCCCCchhhh
Confidence 999999996 78888741 357789999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHH-cCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCC
Q psy2894 237 ISAYSGCTIGEYFRD-HGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNG 315 (515)
Q Consensus 237 ~a~~~a~~iAE~frd-~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~ 315 (515)
..|..|+|.|||+++ .+||||+|+.|++.+|+|+||+|.+..|.|||+||||++|..++.+|||||++
T Consensus 251 itprlalt~aeflayq~ekhvlviltdmssya~alrevsaareevpgrrg~pgymytdlatiyeragrv----------- 319 (489)
T KOG1351|consen 251 ITPRLALTTAEFLAYQCEKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRV----------- 319 (489)
T ss_pred cchhhhHhHHHHHHHhhcCeEEEEEeccHHHHHHHHHHHHhhhhCCCcCCCCceehhhHHHHHHHhccc-----------
Confidence 999999999999997 49999999999999999999999999999999999999999999999999998
Q ss_pred cccCCCCceeeeeEEeecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCcccccccc-----chHHHHHHH
Q psy2894 316 KVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAA-----QIKFIKKLS 390 (515)
Q Consensus 316 ~~~g~~GSiT~l~~v~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~-----~~~~~~~~a 390 (515)
.|++||||.+|+..+|.||+++||||-+..||+||||.||+|+++.+||+||++.|+||+|.++ ..+.|-+++
T Consensus 320 --egr~gsitqipiltmpnddithpipdltgyitegqiyvdrqlhnr~iyppinvlpslsrlmksaigegmtr~dh~dvs 397 (489)
T KOG1351|consen 320 --EGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVS 397 (489)
T ss_pred --ccCCCceeeeeeEecCCcccCCCCCcccceeecceEEEehhhhcccCCCCcccchhHHHHHHHHhcCCcccccchhhH
Confidence 6679999999999999999999999999999999999999999999999999999999999765 348999999
Q ss_pred HHHHHHHHhhHHHHHHHH-hc-cCCCHHHHHHHHhhHHHhh-cccccccCCCCHHHHHHHHHHHhcCcccccchhHHHHH
Q psy2894 391 SNIRTDLAQYRELAAFSQ-FS-SDLDLVTRKQLDRGARVTE-LLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNF 467 (515)
Q Consensus 391 ~~lr~~la~y~el~~~~~-~g-~~ld~~~~~~l~~~~~i~~-~L~Q~~~~~~~~~~~~~~l~~~~~G~ld~v~~~~v~~f 467 (515)
.+|...|+--++.+++-. .| +.|+.++...++.-.++++ |+.|..|+..++.|++...| .+|.-.|.+-+++.
T Consensus 398 nqlya~yaigkdvqamkavvgeeals~ed~l~lefl~kfek~fi~qg~yenrtvfesldi~w----~llrifpreml~ri 473 (489)
T KOG1351|consen 398 NQLYACYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFEKNFISQGAYENRTVFESLDIAW----QLLRIFPREMLKRI 473 (489)
T ss_pred HHHHHHHHhcchHHHHHHHhcccccChhhhHHHHHHHHHHHHHHhcCCccchhHHHHHHHHH----HHHHHhHHHHHhhc
Confidence 999999999999999955 57 5799999999999999985 99999999999999888777 45555555555555
Q ss_pred HHHHHHHH
Q psy2894 468 ESSLYKFM 475 (515)
Q Consensus 468 ~~~l~~~l 475 (515)
....++.+
T Consensus 474 p~~~ld~~ 481 (489)
T KOG1351|consen 474 PAKTLDEF 481 (489)
T ss_pred cHHHHHHh
Confidence 55555443
No 54
>KOG1352|consensus
Probab=100.00 E-value=1.3e-72 Score=571.31 Aligned_cols=415 Identities=25% Similarity=0.341 Sum_probs=375.3
Q ss_pred cCccceeEEEEEECcEEEEEecCCCcccCEEEEc-CCceEEEEEEeCCeEEEEEeCCCCCCCCCCEEEEcCCccccccCc
Q psy2894 23 TEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFP-GNVFGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGP 101 (515)
Q Consensus 23 ~~~~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~-~~~~g~V~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvg~ 101 (515)
....++|+|.+|+|+++.+..+.++.+.|+|+++ +.+.|+++.+++|.+++++|++++|+.+||+|.+||++++|.+|+
T Consensus 16 ~~es~~G~v~~VSGPVV~a~~M~G~aMYELVrVGh~~LvGEiIrlegD~aTIQVYEeTsG~tVgDpvlrTgkPLsvELGP 95 (618)
T KOG1352|consen 16 EEESEYGRVYSVSGPVVVAENMAGCAMYELVRVGHDELVGEIIRLEGDMATIQVYEETSGLTVGDPVLRTGKPLSVELGP 95 (618)
T ss_pred hhhhccceEEeccCceEehhcccchHHHHHHHcchHhhhhheeEecCceeEEEEEeccCCcccCCchhhcCCcceEeeCc
Confidence 4457889999999999999999999999999997 568999999999999999999999999999999999999999999
Q ss_pred cccceEecccCCcCCCC----------------------------------------------------------CC---
Q psy2894 102 ELCGRVINALGDPIDGK----------------------------------------------------------GP--- 120 (515)
Q Consensus 102 ~lLGrViD~lG~pid~~----------------------------------------------------------~~--- 120 (515)
+++|.|+|+..+|+... +|
T Consensus 96 GimgsIfDGIQRPLk~I~~~s~siyiPkGv~~~aL~r~~~weF~p~k~~vg~hitGGDiyg~V~ENsli~hki~lpPr~~ 175 (618)
T KOG1352|consen 96 GIMGSIFDGIQRPLKDISELSQSIYIPKGVNTPALDREIKWEFTPGKLRVGDHITGGDIYGSVFENSLIKHKILLPPRAR 175 (618)
T ss_pred chhhhhhhhhhhhHHHHHHhcCcEeccCCCCccccCccceeecccceeeecceeecCceEEEeeccchhhceeecCCccC
Confidence 99999999999998410 00
Q ss_pred -----------------------------CCcccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCC
Q psy2894 121 -----------------------------IKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDR 171 (515)
Q Consensus 121 -----------------------------~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~ 171 (515)
...-+.||+..+.| +.+..+-+.||.||.|++|+|+|+..|+...|.|..
T Consensus 176 Gtvt~iAp~G~Y~~~d~vlE~Ef~g~k~~~tmlq~WPVR~pRP-v~ekl~an~PLltGQRvLDalfPcVqGGTtaIPGAF 254 (618)
T KOG1352|consen 176 GTVTYIAPAGNYTLDDVVLELEFDGEKTKFTMLQTWPVRQPRP-VTEKLPANHPLLTGQRVLDALFPCVQGGTTAIPGAF 254 (618)
T ss_pred ceEEEEecCCccccccEEEEEeecCceeeEEEEEecccCCCcc-hhhccCCCCcccccchHHHhhcchhcCCccccCccc
Confidence 01112367766665 788888999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhh---------cCCCCcEEEEEeCCCCCHHhhHHHHhhh
Q psy2894 172 QTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEK---------YGAMPYTIIVAATASDSASMQFISAYSG 242 (515)
Q Consensus 172 g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~---------~~~~~~t~vv~~t~~~~~~~r~~a~~~a 242 (515)
|+|||+| -+.+....++|+ +|||+||||++|+.|++.++.+ +..|+||.+|++|+++|.+.|.++.|+|
T Consensus 255 GCGKTVI-SQsLSKYSNSD~-iiYVGCGERGNEMsEVL~dFPeLt~ev~G~~esiMKRT~LVANTSNMPVAAREASIYTG 332 (618)
T KOG1352|consen 255 GCGKTVI-SQSLSKYSNSDA-IIYVGCGERGNEMSEVLMDFPELTMEVDGKTESIMKRTALVANTSNMPVAAREASIYTG 332 (618)
T ss_pred ccchHHH-HHHHhhccCCCe-EEEEcccccchhHHHHHHhChhhEEecCCcchhhhhhhhhhhcCCCCchhhhhhhhhhc
Confidence 9999999 477887889997 5999999999999999998866 4579999999999999999999999999
Q ss_pred hhhHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCC
Q psy2894 243 CTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTG 322 (515)
Q Consensus 243 ~~iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~G 322 (515)
+|+||||||+|+||-.+.||.+|||+|+||||..|.|+|+.-|||.++-..++.+|||||+..| +|++ . +.|
T Consensus 333 ITlsEYfRDmG~nVsMmADStSRWAEALREISGRLaEMPADsGyPAYLgArLAsFYERAG~vkc-----LGsP--~-ReG 404 (618)
T KOG1352|consen 333 ITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKC-----LGSP--D-REG 404 (618)
T ss_pred ccHHHHHHhcCcceeeeecchhHHHHHHHHhhhhhhcCcCcCCCcHHHHHHHHHHHHhcCceee-----cCCC--C-cCc
Confidence 9999999999999999999999999999999999999999999999999999999999999866 2333 3 489
Q ss_pred ceeeeeEEeecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccch------HHHHHHHHHHHHH
Q psy2894 323 SLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQI------KFIKKLSSNIRTD 396 (515)
Q Consensus 323 SiT~l~~v~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~------~~~~~~a~~lr~~ 396 (515)
|+|++++|.+||||++||+.+.+.+|+.-.|-||++||++.|||.|||+.|+|.++..... +++--+..+.|..
T Consensus 405 sVsIVgAVSPpGGDFsDPVTsATLgIvQVFWGLDKKLAQRKHFPSiNwliSYSkY~~aL~~~Ye~~~peF~~lRtk~kei 484 (618)
T KOG1352|consen 405 SVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDPFYEKNYPEFVVLRTKAKEI 484 (618)
T ss_pred eeEEEEeecCCCCCcCCcchhhhhheeeehhcccHHHHhhccCCccchhhhHHHHHHHHHHHHHhcCCCccchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987643 4455788899999
Q ss_pred HHhhHHHHHHHHh-c-cCCCHHHHHHHHhhHHHhh-cccccccCCC----CHHHHHHHH
Q psy2894 397 LAQYRELAAFSQF-S-SDLDLVTRKQLDRGARVTE-LLKQKQYSPL----PVSLIAVIL 448 (515)
Q Consensus 397 la~y~el~~~~~~-g-~~ld~~~~~~l~~~~~i~~-~L~Q~~~~~~----~~~~~~~~l 448 (515)
|++-++|..++|+ | +.|.+.++..++-+..|.+ ||+|+.|+++ ++.+++-.|
T Consensus 485 lq~eedl~eivQLVGK~aL~etdKitLevaklik~DfLqQN~ys~YD~~CPfyKt~~Ml 543 (618)
T KOG1352|consen 485 LQEEEDLSEIVQLVGKSALAETDKITLEVAKLIKDDFLQQNGYSPYDRFCPFYKTVGML 543 (618)
T ss_pred HhhhhhHHHHHHHhhhhhhhhcchhhHHHHHHHHHHHHhhcCCCchhhcCchHHHHHHH
Confidence 9999999999997 4 6899999999999999985 9999999886 677777655
No 55
>KOG1350|consensus
Probab=100.00 E-value=4.8e-72 Score=556.02 Aligned_cols=422 Identities=24% Similarity=0.386 Sum_probs=379.1
Q ss_pred ccceeEEEEEECcEEEEEecCC-CcccCEEEEcC--C-c-eEEEEEEeCCeEEEEEeCCCCCCCCCCEEEEcCCcccccc
Q psy2894 25 IYNQGKVISVFDGICQIYGLSN-AMQGEMLEFPG--N-V-FGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPI 99 (515)
Q Consensus 25 ~~~~G~V~~I~g~iv~v~Gl~~-~~~gElv~~~~--~-~-~g~V~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpv 99 (515)
....|+|+.|-|.++.|..-++ ..+-.-.++.. . + .....++-++.+.++.++.++|+..|+.|.-||.+.+|||
T Consensus 49 ~~~~G~i~avIGavvDv~F~~~~P~ilNaLev~~~~~~lvlEV~qhlG~n~VR~iAMdgTEGLvRG~~VlDtG~Pi~ipV 128 (521)
T KOG1350|consen 49 KKNKGRIVAVIGAVVDVQFEEGLPPILNALEVKGRDTRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLDTGYPISIPV 128 (521)
T ss_pred cccCCcEEEEEeeeEEEecCCCCcchhhceeecCCCceeeeHHHHHhCcCeEEEEEecCchhhhcCcccccCCCceeeec
Confidence 4568999999999999985433 22222233432 1 2 3334577889999999999999999999999999999999
Q ss_pred CccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCccHHH
Q psy2894 100 GPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIA 179 (515)
Q Consensus 100 g~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GKt~l~ 179 (515)
|++.||||+|..|+|||..+|+.+..+.||+..+|...+-..-.|.|.||||++|+|.|..||+++|+||++|+|||+|.
T Consensus 129 G~~tLGRI~NViGePiDerGpi~s~~~~~IHaeaP~f~e~s~~~eIl~TGIKVvDLLAPYakGGKIGLFGGAGVGKTVlI 208 (521)
T KOG1350|consen 129 GPETLGRIMNVIGEPIDERGPIKSKKYSPIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLI 208 (521)
T ss_pred CHHHHhhHHHhcCCcccccCCcccccccccccCChhHhhhcccHHHHhhcceeeeeecccccCCeeeeeccCCccceeeH
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999997
Q ss_pred HHHHHHh-cCCCeEEEEEEecCChHHHHHHHHHHhhcCCC------CcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHH-
Q psy2894 180 IDIIINQ-KNKNVTCIYVAIGQKISSIKKTANLLEKYGAM------PYTIIVAATASDSASMQFISAYSGCTIGEYFRD- 251 (515)
Q Consensus 180 ~~~i~~~-~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~------~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd- 251 (515)
|+.|-|- +..+-+.||+++|||.||-.++++++.+.|++ .+..+|...+++||+.|.+.+.+|+|+||||||
T Consensus 209 mELINNiAKaHGGySVF~GvGERTREGNDLY~EM~E~gVI~l~~~~SKvaLV~GQMNePPGARaRV~LTgLTvAEYFRD~ 288 (521)
T KOG1350|consen 209 MELINNIAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLEGETSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQ 288 (521)
T ss_pred HHHHHHHHHhcCCeEEeeccccccccccHHHHHHHhcCeeeccCCcceEEEEeeccCCCCCceeeeeeecccHHHHhhcc
Confidence 7777663 44455789999999999999999999997764 678899999999999999999999999999999
Q ss_pred cCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEe
Q psy2894 252 HGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIE 331 (515)
Q Consensus 252 ~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~ 331 (515)
.|+|||+++|++.||.+|..|+|.+|||.|+..||.|.+-.....+.||.... ..||||.+.+|+
T Consensus 289 egQDVLLFIDNIFRFtQAGSEVSALLGRiPSAVGYQPTLaTdMG~mQERITtT---------------kkGSiTSvQAvY 353 (521)
T KOG1350|consen 289 EGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT---------------KKGSITSVQAVY 353 (521)
T ss_pred ccceEEEeehhhhhhhccchHHHHHhccCccccccCcccccchhhhhHhhhcc---------------ccCceeEEEEEE
Confidence 59999999999999999999999999999999999999999999999998764 379999999999
Q ss_pred ecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccc-hHHHHHHHHHHHHHHHhhHHHHHHHH-h
Q psy2894 332 TQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQ-IKFIKKLSSNIRTDLAQYRELAAFSQ-F 409 (515)
Q Consensus 332 ~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~-~~~~~~~a~~lr~~la~y~el~~~~~-~ 409 (515)
+|+||++||.|..+.+++|..-+|||.+++.|+|||+||+.|.||+|.... -.+|+.+|+.+++.|+.|++|++++. +
T Consensus 354 VPADDLtDPaPattFaHLDAttVLSR~iaelgIYPAVDPLDStSrimdp~ivG~eHY~vA~~Vqk~LQ~YKsLQDIIAIL 433 (521)
T KOG1350|consen 354 VPADDLTDPAPATTFAHLDATTVLSRGIAELGIYPAVDPLDSTSRIMDPNIVGEEHYNVARGVQKTLQDYKSLQDIIAIL 433 (521)
T ss_pred eehhccCCCCccceeeccchhhhhhhhhHhcCCccccCCccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999997654 59999999999999999999999987 5
Q ss_pred c-cCCCHHHHHHHHhhHHHhhccccccc----------CCCCHHHHHHHHHHHhcCcccccch
Q psy2894 410 S-SDLDLVTRKQLDRGARVTELLKQKQY----------SPLPVSLIAVILFAINKGFLDDIEI 461 (515)
Q Consensus 410 g-~~ld~~~~~~l~~~~~i~~~L~Q~~~----------~~~~~~~~~~~l~~~~~G~ld~v~~ 461 (515)
| .+|+++++..+.|+++|+.||.||+. ..+++++++..+.++.+|-+|++|.
T Consensus 434 GmDELSEeDkLTV~RARKiqRFLSQPF~VAEvFTG~~GklV~l~~ti~gF~~iL~Ge~D~lPE 496 (521)
T KOG1350|consen 434 GMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHPGKLVPLEETIRGFKAILEGEYDHLPE 496 (521)
T ss_pred CchhhchhhhhhHHHHHHHHHHHcCchhhhhhhcCCCCceecHHHHHHHHHHHhcCcccCCch
Confidence 7 68999999999999999999999986 2347777777777777777777764
No 56
>PRK12608 transcription termination factor Rho; Provisional
Probab=100.00 E-value=1.8e-71 Score=575.43 Aligned_cols=301 Identities=18% Similarity=0.198 Sum_probs=280.3
Q ss_pred CCCCCCCCEEEEcCCccccccCccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCcccc-ccccccccccc
Q psy2894 79 YEHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPL-QTGIKAIDSIV 157 (515)
Q Consensus 79 ~~gi~~G~~V~~tg~~~~vpvg~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl-~TGik~ID~l~ 157 (515)
..+|+.||.|..++++ ++|+.+||||+|++|+|+|+.. .........+++|.+|.++.++. .+|+|+||+|+
T Consensus 56 ~~~l~~Gd~V~~~~r~---~~~~~~LgrV~~~~G~p~d~~~----~~~~~~~~~pi~p~~R~~ie~~~~~~~~RvID~l~ 128 (380)
T PRK12608 56 RFNLRTGDVVEGVARP---RERYRVLVRVDSVNGTDPEKLA----RRPHFDDLTPLHPRERLRLETGSDDLSMRVVDLVA 128 (380)
T ss_pred HhCCCCCCEEEeccCC---CCChhheEEEeccCCcCchhcc----cccCcCcCCCCCccccccccccCcchhHhhhhhee
Confidence 3589999999999988 9999999999999999999873 22346677888999999999999 99999999999
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHHh---cCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHh
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIINQ---KNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASM 234 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~~---~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~ 234 (515)
|||||||++|+|++|+|||+|+ .++++. ++.+++|+|++||||++||.+|++.+.. +|+++++|+|+..
T Consensus 129 PiGkGQR~LIvG~pGtGKTTLl-~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~-------~Vvast~de~~~~ 200 (380)
T PRK12608 129 PIGKGQRGLIVAPPRAGKTVLL-QQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKG-------EVYASTFDRPPDE 200 (380)
T ss_pred ecCCCceEEEECCCCCCHHHHH-HHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhh-------hEEeecCCCCHHH
Confidence 9999999999999999999995 666553 3558889999999999999999999863 6888999999999
Q ss_pred hHHHHhhhhhhHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccC
Q psy2894 235 QFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTN 314 (515)
Q Consensus 235 r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~ 314 (515)
+..+.++++++||||+++|+||+|++||+||||+||||+++..||||+ .|||+++|+.++||+||||+.
T Consensus 201 ~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~A~A~rei~~~~G~~~s-~G~~~s~~~~~~rl~~~A~~~---------- 269 (380)
T PRK12608 201 HIRVAELVLERAKRLVEQGKDVVILLDSLTRLARAYNNEVESSGRTLS-GGVDARALQRPKRLFGAARNI---------- 269 (380)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHHHHHHHhhhcccCCCCC-CCcChHHHhhhHHHHHhcCCC----------
Confidence 999999999999999999999999999999999999999999999999 899999999999999999986
Q ss_pred CcccCCCCceeeeeEEeec-CCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHH
Q psy2894 315 GKVTGKTGSLTAIPIIETQ-AGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNI 393 (515)
Q Consensus 315 ~~~~g~~GSiT~l~~v~~~-~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~l 393 (515)
.+ +||||+|+||+++ |+|++|||.++++|++||||+|||+||++|||||||+++|.||++..+..++|.+.+.++
T Consensus 270 ---~~-~GSiT~i~TvLvetg~~mdd~I~ee~kg~~dg~ivLsR~lA~~~~fPAIDi~~S~sR~~~~l~~~~~~~~~~~~ 345 (380)
T PRK12608 270 ---EE-GGSLTIIATALVDTGSRMDEVIFEEFKGTGNMEIVLDRELADKRVFPAIDIAKSGTRREELLLDSKELEKVRRL 345 (380)
T ss_pred ---CC-CcchhheEEEEEecCCCCCcchHHHhcccCCCeEEECHHHHhCCCCCccCcccccCcchhhcCCHHHHHHHHHH
Confidence 44 8999999999999 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHh
Q psy2894 394 RTDLAQYRELAAFSQF 409 (515)
Q Consensus 394 r~~la~y~el~~~~~~ 409 (515)
|+.|+.|++.+.+-.+
T Consensus 346 R~~l~~~~~~e~~~~~ 361 (380)
T PRK12608 346 RRALASRKPVEAMEAL 361 (380)
T ss_pred HHHHHccCHHHHHHHH
Confidence 9999999999987544
No 57
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=100.00 E-value=1.3e-70 Score=535.60 Aligned_cols=215 Identities=43% Similarity=0.693 Sum_probs=202.1
Q ss_pred cccccccccccccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeC
Q psy2894 148 TGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAAT 227 (515)
Q Consensus 148 TGik~ID~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t 227 (515)
||||+||+|+|||||||++|||++|+|||+| +.+|+++..+|.+ ||++||||++|+.+|++++++.++|+||++|++|
T Consensus 1 TGir~ID~l~Pig~Gqr~~I~g~~g~GKt~L-l~~i~~~~~~d~~-V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t 78 (215)
T PF00006_consen 1 TGIRAIDLLFPIGRGQRIGIFGGAGVGKTVL-LQEIANNQDADVV-VYALIGERGREVTEFIEELKGEGALERTVVVAAT 78 (215)
T ss_dssp -SHHHHHHHSCEETTSEEEEEESTTSSHHHH-HHHHHHHCTTTEE-EEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEE
T ss_pred CCCceeccccccccCCEEEEEcCcccccchh-hHHHHhcccccce-eeeeccccchhHHHHHHHHhhccccccccccccc
Confidence 8999999999999999999999999999999 5777777778865 9999999999999999999999999999999999
Q ss_pred CCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchh
Q psy2894 228 ASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIK 307 (515)
Q Consensus 228 ~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~ 307 (515)
+|+||.+|+++||+||++||||||+|+|||+++||+||||+|+||+++++||||+++|||+++|+.|++|+||||+++..
T Consensus 79 ~~~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dsltr~a~A~reis~~~g~~p~~~Gyp~~~~~~l~~l~ERag~~~~~ 158 (215)
T PF00006_consen 79 SDEPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSLTRWAQAYREISLLLGEPPGREGYPPSLFSDLASLYERAGKVNSE 158 (215)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETHHHHHHHHHHHHHHTTSSBBGGGSBTTHHHHHHHHHTTSEEBSTT
T ss_pred chhhHHHHhhhhccchhhhHHHhhcCCceeehhhhhHHHHHHHHhhhcccccccccccccchhccchhhHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998442
Q ss_pred hhhcccCCcccCCCCceeeeeEEeecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCcc
Q psy2894 308 YVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVS 375 (515)
Q Consensus 308 ~~~~~~~~~~~g~~GSiT~l~~v~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~S 375 (515)
.+ +||||++++|++++||++|||++++++|+||||+|||+||++||||||||+.|+|
T Consensus 159 ----------~~-~GSIT~~~~v~~~~~d~~~pi~~~~~~~~dg~i~L~r~la~~~~~PAId~~~S~S 215 (215)
T PF00006_consen 159 ----------EG-GGSITAIPTVLVPGDDITDPIPDNTKSILDGHIVLSRKLAERGIFPAIDVLKSVS 215 (215)
T ss_dssp ----------TT-SEEEEEEEEEEESTTBTTSHHHHHHHTTSSEEEEB-HHHHHTT-SS-BETTTEEE
T ss_pred ----------cC-CceeeeecccccccccccchHHHHHHhhcceEEEeCHHHHhCCCCCccCCccCCC
Confidence 33 9999999999999999999999999999999999999999999999999999997
No 58
>PRK12678 transcription termination factor Rho; Provisional
Probab=100.00 E-value=9.2e-64 Score=534.12 Aligned_cols=293 Identities=22% Similarity=0.285 Sum_probs=254.4
Q ss_pred CCCCCCCEEEEcCCcccccc-Cc--------cccceEecccCCcCCCCCCCCcccccccccC-CCCccccCCCc-ccccc
Q psy2894 80 EHITEGDIVKCTGRILEVPI-GP--------ELCGRVINALGDPIDGKGPIKTKLTAPIEKV-APGVISRQSVS-EPLQT 148 (515)
Q Consensus 80 ~gi~~G~~V~~tg~~~~vpv-g~--------~lLGrViD~lG~pid~~~~~~~~~~~~i~~~-~p~~~~R~~~~-epl~T 148 (515)
.+|+.||.|...- ..|- |+ .-|-||- .++|.+|-....+.+++.. |++|.+|.++. +|+.|
T Consensus 331 ~~Lr~Gd~v~G~v---r~p~~~e~~~~r~k~~~l~~v~-----~vNg~~~e~~~~r~~F~~Ltp~~P~~R~~le~e~~~~ 402 (672)
T PRK12678 331 NGLRKGDAVTGAV---RAPREGEQGNQRQKFNPLVRLD-----SVNGMSPEEAKKRPEFGKLTPLYPNERLRLETEPKKL 402 (672)
T ss_pred cCCCCCCEEEEee---cCCCCCccccccceeeeeeeEe-----eeCCCChHHhccCCCcccCCCCChHHhcccccCcccc
Confidence 3788888887432 2222 22 1233333 3444444444444555544 66789999998 99999
Q ss_pred ccccccccccccCCcceeeecCCCCCccHHHHHHHHHhc---CCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEE
Q psy2894 149 GIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQK---NKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVA 225 (515)
Q Consensus 149 Gik~ID~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~---~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~ 225 (515)
|+|+||+|+|||||||+|||||+|+|||+| |.+|+|+. +.+++|||++||||++||.+|.+.++ ..||+
T Consensus 403 giRvIDll~PIGkGQR~LIvgpp~aGKTtL-L~~IAn~i~~n~~~~~~ivvLIgERpeEVtdm~rsVk-------geVVa 474 (672)
T PRK12678 403 TTRVIDLIMPIGKGQRGLIVSPPKAGKTTI-LQNIANAITTNNPECHLMVVLVDERPEEVTDMQRSVK-------GEVIA 474 (672)
T ss_pred cceeeeeecccccCCEeEEeCCCCCCHHHH-HHHHHHHHhhcCCCeEEEEEEEeCchhhHHHHHHhcc-------ceEEE
Confidence 999999999999999999999999999999 58899975 78899999999999999999854331 23999
Q ss_pred eCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCC-----CCCCCCCCCchhhhhhHHHHH
Q psy2894 226 ATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKR-----PPGREAYPGDIFYLHSRLLER 300 (515)
Q Consensus 226 ~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~-----pp~~~gypg~vf~~~~rl~ER 300 (515)
+|+|+||..|++++|+||++||||+|+|+|||||+|||||||+||||+++..|+ ||+..+|||++|+.++|++|
T Consensus 475 sT~D~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSlTR~ArAyrev~~~sGr~lSGG~d~~a~ypP~~F~~~AR~iE- 553 (672)
T PRK12678 475 STFDRPPSDHTTVAELAIERAKRLVELGKDVVVLLDSITRLGRAYNLAAPASGRILSGGVDSTALYPPKRFFGAARNIE- 553 (672)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCchHHHHHHHHhhcCCCCccCCCCchhhccCccHHHHHHHhhc-
Confidence 999999999999999999999999999999999999999999999999999999 79999999999999999988
Q ss_pred hhccchhhhhcccCCcccCCCCceeeeeEEeec-CCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCcccccc
Q psy2894 301 SARVNIKYVENYTNGKVTGKTGSLTAIPIIETQ-AGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGG 379 (515)
Q Consensus 301 ag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~~-~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~ 379 (515)
++||||+||||+++ ++++++||.+++++++||||+|||+|+++||||||||+.|+||++.
T Consensus 554 -------------------~gGSLTii~TvLVETGS~mDd~Ifeefkgtgn~elvLsR~LAerrifPAIDv~~S~SR~ee 614 (672)
T PRK12678 554 -------------------NGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELKLDRKLADKRIFPAVDVNASGTRKEE 614 (672)
T ss_pred -------------------cCccceeeEEEEeccCCccCcchHHHHhhccCceeeECHHHHhCCCCCccCCCcCccccch
Confidence 37999999999999 7889999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy2894 380 AAQIKFIKKLSSNIRTDLAQYRELAAFSQ 408 (515)
Q Consensus 380 ~~~~~~~~~~a~~lr~~la~y~el~~~~~ 408 (515)
.+..++|.+.+.+||+.|+.|...+.+-.
T Consensus 615 ~l~~~~e~~~~~~lRr~l~~~~~~~a~e~ 643 (672)
T PRK12678 615 LLLSPDELAIVHKLRRVLSGLDSQQAIDL 643 (672)
T ss_pred hhCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999998887643
No 59
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=100.00 E-value=3.1e-63 Score=514.90 Aligned_cols=300 Identities=20% Similarity=0.223 Sum_probs=264.0
Q ss_pred CCCCCCCEEEEcCCccccccCcc--ccceEecccCCcCCCCCCCCccccccccc-CCCCccccCCCcc--cccccccccc
Q psy2894 80 EHITEGDIVKCTGRILEVPIGPE--LCGRVINALGDPIDGKGPIKTKLTAPIEK-VAPGVISRQSVSE--PLQTGIKAID 154 (515)
Q Consensus 80 ~gi~~G~~V~~tg~~~~vpvg~~--lLGrViD~lG~pid~~~~~~~~~~~~i~~-~~p~~~~R~~~~e--pl~TGik~ID 154 (515)
-+++.||.|...-++.. -|+. -|-+|-...|.+.+. ...+.+++. .|++|.+|.++.+ |+.||+|+||
T Consensus 89 ~~lr~gd~v~g~~r~~~--~~e~~~~l~~v~~vng~~~~~-----~~~r~~f~~l~p~~p~~R~~le~~~~~~~~~rvID 161 (416)
T PRK09376 89 FNLRTGDTVEGKIRPPK--EGERYFALLKVETVNGEDPEK-----ARNRPLFENLTPLYPNERLRLETGNPEDLSTRIID 161 (416)
T ss_pred cCCCCCCEEEEEeeCCC--CCCCccceEEEeeeCCCCHHH-----hcCCCCcccCCCCChhhcccccCCCCcccceeeee
Confidence 37888998876544321 1222 345666665655443 223334433 4678999999998 8999999999
Q ss_pred ccccccCCcceeeecCCCCCccHHHHHHHHHhc---CCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q psy2894 155 SIVPIGKGQRELIIGDRQTGKSSIAIDIIINQK---NKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDS 231 (515)
Q Consensus 155 ~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~---~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~ 231 (515)
+|+|||||||++|+||+|+|||||+ ..|+|+. +.|++|++++||||++||.++++.+. .+||++|+|+|
T Consensus 162 ~l~PIGkGQR~lIvgppGvGKTTLa-K~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIl-------g~vv~st~d~~ 233 (416)
T PRK09376 162 LIAPIGKGQRGLIVAPPKAGKTVLL-QNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVK-------GEVVASTFDEP 233 (416)
T ss_pred eecccccCceEEEeCCCCCChhHHH-HHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhc-------CcEEEECCCCC
Confidence 9999999999999999999999995 6777753 56899999999999999999999986 27999999999
Q ss_pred HHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhc
Q psy2894 232 ASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVEN 311 (515)
Q Consensus 232 ~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~ 311 (515)
|..|++++|.++++||||+++|+||||++||+||||+||||++++.||||+ .|||+++|+.++||+|||+++
T Consensus 234 ~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~arAqrev~~~sG~~~s-gG~~~~~~~~~~r~f~~Arn~------- 305 (416)
T PRK09376 234 AERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLS-GGVDANALHRPKRFFGAARNI------- 305 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHHHHHHHHhhhhccCCCCC-CCCChhHhhhhHHHHHhhcCC-------
Confidence 999999999999999999999999999999999999999999999999999 899999999999999999986
Q ss_pred ccCCcccCCCCceeeeeEEeec-CCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHH
Q psy2894 312 YTNGKVTGKTGSLTAIPIIETQ-AGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLS 390 (515)
Q Consensus 312 ~~~~~~~g~~GSiT~l~~v~~~-~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a 390 (515)
.. +||||+|+||+++ |++|+|||.+++++++||||+|||+||++||||||||+.|.||++..+..++|.+.+
T Consensus 306 ------e~-~GSlT~i~T~LvetGs~mdd~I~ee~kg~~n~~ivLdR~lA~~r~fPAIDi~~S~sR~~~~l~~~~~~~~~ 378 (416)
T PRK09376 306 ------EE-GGSLTIIATALIDTGSRMDEVIFEEFKGTGNMELHLDRKLAEKRIFPAIDINRSGTRKEELLLSPEELQKV 378 (416)
T ss_pred ------CC-CcceEEEEEEEecCCCCCCccHHHHHhhhcCceEeECHHHHhcCCCCccCccccccccccccCCHHHHHHH
Confidence 33 8999999999999 889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHh
Q psy2894 391 SNIRTDLAQYRELAAFSQF 409 (515)
Q Consensus 391 ~~lr~~la~y~el~~~~~~ 409 (515)
..+|+.|+.|++.+.+-.+
T Consensus 379 ~~lR~~l~~~~~~e~~e~~ 397 (416)
T PRK09376 379 WILRKILSPMDEVEAMEFL 397 (416)
T ss_pred HHHHHHHHccCcHHHHHHH
Confidence 9999999999998877544
No 60
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=100.00 E-value=1.2e-56 Score=467.61 Aligned_cols=243 Identities=19% Similarity=0.242 Sum_probs=228.9
Q ss_pred cccccccccccccccccCCcceeeecCCCCCccHHHHHHHHHh---cCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCc
Q psy2894 144 EPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ---KNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPY 220 (515)
Q Consensus 144 epl~TGik~ID~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~---~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~ 220 (515)
.|-..|+|+||.++|||+|||++|+|++|+|||+| +..|.+. ++.+++|++++||||++||.+|++.+.
T Consensus 150 ~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL-~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIl------- 221 (415)
T TIGR00767 150 STEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVL-LQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVK------- 221 (415)
T ss_pred CccccceeeeeeEEEeCCCCEEEEECCCCCChhHH-HHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhh-------
Confidence 46678999999999999999999999999999999 5777774 346778999999999999999999985
Q ss_pred EEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHH
Q psy2894 221 TIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLER 300 (515)
Q Consensus 221 t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ER 300 (515)
..||++|+|+||..|..+++.++++||||+++|+||+|++|++||||+||||+++++||||+ +|||+++|+.++||+||
T Consensus 222 g~Vvast~d~p~~~~~~va~~v~e~Ae~~~~~GkdVVLlIDEitR~arAqrei~~~~G~~~s-~G~~~~~~~~~~~~~~~ 300 (415)
T TIGR00767 222 GEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVTPASGKVLS-GGVDANALHRPKRFFGA 300 (415)
T ss_pred ceEEEecCCCChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEChhHHHHHHHHhHhhcCCCCC-CCcChhhhcccHHHHhh
Confidence 47999999999999999999999999999999999999999999999999999999999998 99999999999999999
Q ss_pred hhccchhhhhcccCCcccCCCCceeeeeEEeec-CCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCcccccc
Q psy2894 301 SARVNIKYVENYTNGKVTGKTGSLTAIPIIETQ-AGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGG 379 (515)
Q Consensus 301 ag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~~-~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~ 379 (515)
|++. .+ +||||+|+||+++ |++|+|||.++++|++||||+|||+||++|||||||++.|.||++.
T Consensus 301 a~~~-------------~~-~GSiT~~~TvLvetg~~mdd~i~~e~kg~~~~~ivL~r~la~~~~fPAidi~~S~sR~~~ 366 (415)
T TIGR00767 301 ARNI-------------EE-GGSLTIIATALIDTGSRMDEVIFEEFKGTGNMELHLDRKLADRRIFPAIDIKKSGTRKEE 366 (415)
T ss_pred cCCC-------------CC-CcchhheEEEEeccCCCCCcchHHHhccccCCeEEECHHHHhCCCCCCcCcccccccchh
Confidence 9986 33 8999999999999 8899999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHhhHHHHHHHHh
Q psy2894 380 AAQIKFIKKLSSNIRTDLAQYRELAAFSQF 409 (515)
Q Consensus 380 ~~~~~~~~~~a~~lr~~la~y~el~~~~~~ 409 (515)
.+..++|.+.+..+|+.|+.|.+.+.+-.+
T Consensus 367 ~l~~~~~~~~~~~~r~~l~~~~~~~~~~~~ 396 (415)
T TIGR00767 367 LLLTPEELQKIWVLRKIISPMDSIEAMEFL 396 (415)
T ss_pred hcCCHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 999999999999999999999998876443
No 61
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=100.00 E-value=5.8e-53 Score=420.22 Aligned_cols=239 Identities=19% Similarity=0.232 Sum_probs=224.4
Q ss_pred ccccccccccccCCcceeeecCCCCCccHHHHHHHHHhcC---CCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEE
Q psy2894 149 GIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKN---KNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVA 225 (515)
Q Consensus 149 Gik~ID~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~---~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~ 225 (515)
..|+||+|+|||+|||++|+|++|+||||| +.+|.|+.. .+++|+++.||+|++++.+|++.+ ++++|+
T Consensus 3 ~~~~id~~~~i~~Gqr~~I~G~~G~GKTTL-lr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I-------~~~~v~ 74 (249)
T cd01128 3 STRVVDLFAPIGKGQRGLIVAPPKAGKTTL-LQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSV-------KGEVIA 74 (249)
T ss_pred chhheeeecccCCCCEEEEECCCCCCHHHH-HHHHHhccccccCCeEEEEEEccCCCccHHHHHHHh-------ccEEEE
Confidence 359999999999999999999999999999 588888643 367888888999999999999998 689999
Q ss_pred eCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccc
Q psy2894 226 ATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVN 305 (515)
Q Consensus 226 ~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~ 305 (515)
+++++||..|+++++.++++||||+++|++|++++|+++|||+||||+++..|+|| ..|||+++|+.+++++|||+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~-sgG~~~~~~~~~~q~~~~Ar~~- 152 (249)
T cd01128 75 STFDEPPERHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKIL-SGGVDANALHKPKRFFGAARNI- 152 (249)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCC-CCCcChhhhhhhHHHHHHhcCC-
Confidence 99999999999999999999999999999999999999999999999999999999 7899999999999999999986
Q ss_pred hhhhhcccCCcccCCCCceeeeeEEeec-CCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchH
Q psy2894 306 IKYVENYTNGKVTGKTGSLTAIPIIETQ-AGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIK 384 (515)
Q Consensus 306 ~~~~~~~~~~~~~g~~GSiT~l~~v~~~-~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~ 384 (515)
.. +||||++||+.++ +++++||+.+++++++||||+||++|+..|+||||||+.|.||.+...+.+
T Consensus 153 ------------~~-~gsIt~l~T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr~~~ll~~~ 219 (249)
T cd01128 153 ------------EE-GGSLTIIATALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTRKEELLLDP 219 (249)
T ss_pred ------------CC-CCceEEeeeheecCCCcccchHHHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCccchhhCCH
Confidence 33 8999999999999 677788999999999999999999999999999999999999999888899
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhc
Q psy2894 385 FIKKLSSNIRTDLAQYRELAAFSQFS 410 (515)
Q Consensus 385 ~~~~~a~~lr~~la~y~el~~~~~~g 410 (515)
.|.+.+.++|..|+.|++++++..+-
T Consensus 220 ~~~~~~~~~r~~~~~~~~~~~~~~~~ 245 (249)
T cd01128 220 EELQRMWLLRRVLSDMDPIEAMEFLL 245 (249)
T ss_pred HHHHHHHHHHHHHHccChHHHHHHHH
Confidence 99999999999999999999987663
No 62
>COG1158 Rho Transcription termination factor [Transcription]
Probab=100.00 E-value=5.8e-39 Score=322.27 Aligned_cols=296 Identities=22% Similarity=0.262 Sum_probs=231.2
Q ss_pred CCCCCCEEEEcCCccccccCccccc--eEecccCCcCCCCCCCCcccccccccCCCCccccCCCcc--cc--cccccccc
Q psy2894 81 HITEGDIVKCTGRILEVPIGPELCG--RVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSE--PL--QTGIKAID 154 (515)
Q Consensus 81 gi~~G~~V~~tg~~~~vpvg~~lLG--rViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~e--pl--~TGik~ID 154 (515)
+++.||.|...=+.+ .-|+.+.+ ||--..|. +|-....+.+++..+|-..+++-.-| +- .-.-|+||
T Consensus 93 ~LrtGD~v~G~vR~P--ke~Ery~aLl~ve~vN~~-----~pe~~~~R~~F~~LTPlyP~erl~LE~~~~~~~ls~RviD 165 (422)
T COG1158 93 NLRTGDTVEGKVRPP--KEGERYFALLKVEAVNGD-----DPEKAKNRVLFENLTPLYPNERLKLERENGSTDLSTRVID 165 (422)
T ss_pred cCccCCEEeeeecCC--CcccceeeeEEEeecCCC-----CHHHhhccCCcccCCCCCCcceeeeecCCCcccchhHHHh
Confidence 566777665432221 12333222 33333333 33334445566666664332222211 11 13349999
Q ss_pred ccccccCCcceeeecCCCCCccHHHHHHHHHh---cCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCC
Q psy2894 155 SIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ---KNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDS 231 (515)
Q Consensus 155 ~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~---~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~ 231 (515)
++.|||||||.+|++||.+|||+| |+.|+|. ++.+++.|+++|+||++||+++.+..+ ..||++|.|+|
T Consensus 166 L~~PIGkGQR~LIVAPPkaGKT~l-Lq~IA~aIt~N~Pe~~LiVLLIDERPEEVTdmqrsV~-------geViaSTFDep 237 (422)
T COG1158 166 LISPIGKGQRGLIVAPPKAGKTTL-LQNIANAITTNHPECELIVLLIDERPEEVTDMQRSVK-------GEVVASTFDEP 237 (422)
T ss_pred hhcccCCCceeeEecCCCCCchHH-HHHHHHHHhcCCCceEEEEEEecCCchHHHHHHHhhc-------ceEEeecCCCc
Confidence 999999999999999999999999 6888884 788999999999999999999999885 56999999999
Q ss_pred HHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhc
Q psy2894 232 ASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVEN 311 (515)
Q Consensus 232 ~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~ 311 (515)
|..+...+...+..|.++.++|+||+|++||+||+|+||+-+.-..|+.-+ .|--+..++...|++..|.++
T Consensus 238 p~~HvqVAE~viEkAKRlVE~~kDVVILLDSITRLaRAYN~v~P~SGkvLs-GGvD~nAL~~PKrFFGAARNI------- 309 (422)
T COG1158 238 PSRHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLS-GGVDANALHRPKRFFGAARNI------- 309 (422)
T ss_pred chhhHHHHHHHHHHHHHHHHcCCcEEEEehhHHHHHHHhcccCCCCCCeec-CCcChhhhcCchhhhhhhhcc-------
Confidence 999999999999999999999999999999999999999998643333322 244444588888999977776
Q ss_pred ccCCcccCCCCceeeeeEEeecCC-CCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHH
Q psy2894 312 YTNGKVTGKTGSLTAIPIIETQAG-DISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLS 390 (515)
Q Consensus 312 ~~~~~~~g~~GSiT~l~~v~~~~~-D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a 390 (515)
.. |||+|+++|.+++.| -|++-|-.++.+..+..++|||+|+++++|||||+.+|.+|...-...+++.+-.
T Consensus 310 ------Ee-GGSLTIiATALVdTGSrMDeVIfEEFKGTGNmEl~LdR~laerRifPAIdi~kSGTRKEeLLl~~~~l~k~ 382 (422)
T COG1158 310 ------EE-GGSLTIIATALVDTGSRMDEVIFEEFKGTGNMELHLDRKLAERRIFPAIDINKSGTRKEELLLSPDELQKM 382 (422)
T ss_pred ------cc-CcchhhhhhhhhhcCCccchhhhhhhcCCCceEEEEhhhhhhcccccceecccCCcchHhhcCCHHHHHHH
Confidence 33 999999999999876 7889999999999999999999999999999999999999999888888877777
Q ss_pred HHHHHHHHhhHHHHHH
Q psy2894 391 SNIRTDLAQYRELAAF 406 (515)
Q Consensus 391 ~~lr~~la~y~el~~~ 406 (515)
-.+|+.|+.-.+.+.+
T Consensus 383 w~lRr~l~~md~~~a~ 398 (422)
T COG1158 383 WVLRRILSPMDEIDAI 398 (422)
T ss_pred HHHHHHhcCCChHHHH
Confidence 7888888766555544
No 63
>PF00306 ATP-synt_ab_C: ATP synthase alpha/beta chain, C terminal domain; InterPro: IPR000793 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the C-terminal domain, which forms a left-handed superhelix composed of 4-5 individual helices. The C-terminal domain can vary between the alpha and beta subunits, and between different ATPases []. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3OAA_U 2F43_B 1MAB_B 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B ....
Probab=99.40 E-value=3.5e-12 Score=112.74 Aligned_cols=88 Identities=34% Similarity=0.513 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHH-hcc-CCCHHHHHHHHhhHHHhhcccccccCCC-------C-HHHHHHHHHHHhcCcc
Q psy2894 387 KKLSSNIRTDLAQYRELAAFSQ-FSS-DLDLVTRKQLDRGARVTELLKQKQYSPL-------P-VSLIAVILFAINKGFL 456 (515)
Q Consensus 387 ~~~a~~lr~~la~y~el~~~~~-~g~-~ld~~~~~~l~~~~~i~~~L~Q~~~~~~-------~-~~~~~~~l~~~~~G~l 456 (515)
++++++++..|++|+||++|++ +|+ +||++++..+.+|++|++||+|++|+|+ + +++++..+|.+.+|++
T Consensus 1 k~v~~~l~~~Laq~~EL~~~~q~vG~d~L~~~~k~~l~~g~~i~e~LkQ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~ 80 (113)
T PF00306_consen 1 KKVAGQLKLILAQYRELEEFVQFVGSDALDDEDKLILERGRRIREFLKQNAFDPVPLEKQYVMILEETIDLFYAILRGKF 80 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTCSTHHHHHHHHHHHHHHHHT-BSTTTTTSSHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcCCCCCCCCcCcchhhhHHHHHHHHHHHHHhCCC
Confidence 5799999999999999999999 685 5999999999999999999999999999 6 6666667899999999
Q ss_pred cccchhHHHHHHHHHHHH
Q psy2894 457 DDIEIKKILNFESSLYKF 474 (515)
Q Consensus 457 d~v~~~~v~~f~~~l~~~ 474 (515)
+++|.+.+..|.....++
T Consensus 81 ~~~~~~~~~~~~~~~~~~ 98 (113)
T PF00306_consen 81 DDIPEEELEKIETKDIEK 98 (113)
T ss_dssp TTS-GGGHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhhHHHHH
Confidence 999999998887776663
No 64
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.17 E-value=1.6e-09 Score=98.12 Aligned_cols=160 Identities=31% Similarity=0.478 Sum_probs=118.3
Q ss_pred eeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhh
Q psy2894 165 ELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCT 244 (515)
Q Consensus 165 ~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~ 244 (515)
.+|+|++|+|||+++...+......+..++|+...+..+.+.+....+...+..++..++....+........ .
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 75 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLL------S 75 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHH------H
Confidence 5799999999999964443333445566789999988887766655555556666766766665554443332 5
Q ss_pred hHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCce
Q psy2894 245 IGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSL 324 (515)
Q Consensus 245 iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSi 324 (515)
++.++.......++|+|+++.++....+. ..+++..+...+.+|++++. ...+
T Consensus 76 ~~~~~~~~~~~~~lviDe~~~~~~~~~~~---------~~~~~~~~~~~l~~l~~~~~------------------~~~~ 128 (165)
T cd01120 76 KAERLRERGGDDLIILDELTRLVRALREI---------REGYPGELDEELRELLERAR------------------KGGV 128 (165)
T ss_pred HHHHHHhCCCCEEEEEEcHHHHHHHHHHH---------HhcCChHHHHHHHHHHHHHh------------------cCCc
Confidence 56777788888899999999999876653 34567766677778877653 3578
Q ss_pred eeeeEEeecCCCCCCc----ccccccccCCeEEEecc
Q psy2894 325 TAIPIIETQAGDISAF----VPTNVISITDGQIFLDS 357 (515)
Q Consensus 325 T~l~~v~~~~~D~s~p----I~~~~~si~Dg~i~L~r 357 (515)
|.+.+.....++...+ .+..+..+.|+-|+|+|
T Consensus 129 ~vv~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 165 (165)
T cd01120 129 TVIFTLQVPSGDKGDPRLTRGAQNLEDIADTVIVLSR 165 (165)
T ss_pred eEEEEEecCCccccCcccccCccceeeecceEEEEeC
Confidence 9998888888777777 88889999999999976
No 65
>PF02874 ATP-synt_ab_N: ATP synthase alpha/beta family, beta-barrel domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR004100 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the N-terminal domain, which forms a closed beta-barrel with Greek-key topology. ; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015992 proton transport, 0046034 ATP metabolic process, 0016469 proton-transporting two-sector ATPase complex; PDB: 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B 1E79_B 1E1R_C 2XND_C ....
Probab=98.55 E-value=2.6e-07 Score=74.12 Aligned_cols=62 Identities=23% Similarity=0.371 Sum_probs=47.7
Q ss_pred EEEEECcEEEEEecCC--CcccCEEEEc-----CCceEEEEEEeCCeEEEEEeCCCCCCCCCCEEEEcC
Q psy2894 31 VISVFDGICQIYGLSN--AMQGEMLEFP-----GNVFGLALNLERDSIGAVILGKYEHITEGDIVKCTG 92 (515)
Q Consensus 31 V~~I~g~iv~v~Gl~~--~~~gElv~~~-----~~~~g~V~~l~~~~v~~~~~~~~~gi~~G~~V~~tg 92 (515)
|++|.|+++++++.+. +.+++.+.++ +..+|+|++++++.+.+++|+++.||++|++|++||
T Consensus 1 V~~v~G~vv~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~Vv~~~~~~v~~~~~~~t~Gl~~G~~V~~tG 69 (69)
T PF02874_consen 1 VTQVVGPVVEVEFGPGVLPGIGEAVEVELVDFGNGVLGEVVGLDEDEVRLQVFGSTDGLSRGTEVRFTG 69 (69)
T ss_dssp EEEEECTEEEEECSEEEEEETTTEEEEEEEEETTEEEEEEEEEETTEEEEEESSSGTTSBTTCEEEEEE
T ss_pred CccccceEEEEEcCCCCCCCccEEEEEecccceeeeeeeecccCccEEEEEEecCCCCCCCCCEEEcCc
Confidence 4556666666644333 3445555544 458999999999999999999999999999999986
No 66
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=98.48 E-value=2.1e-06 Score=86.16 Aligned_cols=183 Identities=23% Similarity=0.268 Sum_probs=115.0
Q ss_pred ccccccccccccccc--ccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHH-------hh
Q psy2894 144 EPLQTGIKAIDSIVP--IGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLL-------EK 214 (515)
Q Consensus 144 epl~TGik~ID~l~p--igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l-------~~ 214 (515)
+.+.|||.-+|-++- +=+|..++|.|+||||||+++++.+.+....+-.|+|+..-|...++.+....+ .+
T Consensus 3 ~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~~ 82 (260)
T COG0467 3 ERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVYIE 82 (260)
T ss_pred ccccCCCcchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHHcCCCHHHHhh
Confidence 467899999999998 789999999999999999999999999888888899999999999998887643 22
Q ss_pred cCCCCcEEEEEeCCCCCHHhh------HHHHhhhhhhHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCC
Q psy2894 215 YGAMPYTIIVAATASDSASMQ------FISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPG 288 (515)
Q Consensus 215 ~~~~~~t~vv~~t~~~~~~~r------~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg 288 (515)
.+ +-.++-+.....+..+ .......-.+-+...+.+ ...+++||++.+...... |.
T Consensus 83 ~g---~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~-~~~~ViDsi~~~~~~~~~--------------~~ 144 (260)
T COG0467 83 KG---KLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEG-ADRVVIDSITELTLYLND--------------PA 144 (260)
T ss_pred cC---CEEEEEccccccccccccccCCccHHHHHHHHHHHHHHhC-CCEEEEeCCchHhhhcCc--------------hH
Confidence 22 1222222222222111 122234445556666666 677889999975533321 11
Q ss_pred chhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEeecCCCCCCcccccccccCCeEEEecchhhcCCC
Q psy2894 289 DIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGI 364 (515)
Q Consensus 289 ~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~ 364 (515)
.. .+++.+..++.. ..| .|++.+.....+..... ...-.+.||.|.|+......+.
T Consensus 145 ~~----r~~~~~l~~~~~-------------~~~-~t~~~~~~~~~~~~~~~--~~~~~~vdgvI~l~~~~~~~~~ 200 (260)
T COG0467 145 LV----RRILLLLKRFLK-------------KLG-VTSLLTTEAPVEERGES--GVEEYIVDGVIRLDLKEIEGGG 200 (260)
T ss_pred HH----HHHHHHHHHHHH-------------hCC-CEEEEEecccccCCCcc--ceEEEEEEEEEEEeeecccCce
Confidence 11 122222222221 144 78776555433222211 1233489999999997766433
No 67
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=98.43 E-value=9.8e-07 Score=86.37 Aligned_cols=173 Identities=22% Similarity=0.250 Sum_probs=100.7
Q ss_pred ccccccccccc--cccCCcceeeecCCCCCccHHHHHHHHHhcCC-CeEEEEEEecCChHHHHHHHHHHhhcCC------
Q psy2894 147 QTGIKAIDSIV--PIGKGQRELIIGDRQTGKSSIAIDIIINQKNK-NVTCIYVAIGQKISSIKKTANLLEKYGA------ 217 (515)
Q Consensus 147 ~TGik~ID~l~--pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~~-~~~~V~~~iGer~~ev~~~~~~l~~~~~------ 217 (515)
.|||.-+|.++ -+-+|.-++|.|++|+|||+++++.+.+.... +-.|+|+..-+..+++.+-.+.+ |.
T Consensus 2 ~TGI~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~---g~d~~~~~ 78 (226)
T PF06745_consen 2 PTGIPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSF---GWDLEEYE 78 (226)
T ss_dssp --SSTTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTT---TS-HHHHH
T ss_pred CCCchhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHc---CCcHHHHh
Confidence 69999999999 78899999999999999999998888887665 66799999999887766554432 21
Q ss_pred -CCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhH
Q psy2894 218 -MPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSR 296 (515)
Q Consensus 218 -~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~r 296 (515)
..+-.++-......-....-.-...-.+.+.+.+.+. ..+++||+|-+ .++.. |......+-.
T Consensus 79 ~~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~-~~vVIDsls~l-~~~~~--------------~~~~r~~l~~ 142 (226)
T PF06745_consen 79 DSGKLKIIDAFPERIGWSPNDLEELLSKIREAIEELKP-DRVVIDSLSAL-LLYDD--------------PEELRRFLRA 142 (226)
T ss_dssp HTTSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTS-SEEEEETHHHH-TTSSS--------------GGGHHHHHHH
T ss_pred hcCCEEEEecccccccccccCHHHHHHHHHHHHHhcCC-CEEEEECHHHH-hhcCC--------------HHHHHHHHHH
Confidence 1123344333221000001111122345555555555 68889999987 21110 1112223344
Q ss_pred HHHHhhccchhhhhcccCCcccCCCCceeeeeEEeecCCCCCCcccc-cccc-cCCeEEEecch
Q psy2894 297 LLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPT-NVIS-ITDGQIFLDSS 358 (515)
Q Consensus 297 l~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~~~~D~s~pI~~-~~~s-i~Dg~i~L~r~ 358 (515)
|+....+ .| +|++.+.+++.+. ++..+ .+.. +.||-|.|+..
T Consensus 143 l~~~l~~-----------------~~-~t~llt~~~~~~~--~~~~~~~i~~~l~D~vI~L~~~ 186 (226)
T PF06745_consen 143 LIKFLKS-----------------RG-VTTLLTSEMPSGS--EDDGTFGIEHYLADGVIELRYE 186 (226)
T ss_dssp HHHHHHH-----------------TT-EEEEEEEEESSSS--SSSSSTSHHHHHSSEEEEEEEE
T ss_pred HHHHHHH-----------------CC-CEEEEEEccccCc--ccccccchhhhcccEEEEEEEE
Confidence 4443322 22 4667677765432 22222 3334 89999999865
No 68
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.23 E-value=1.5e-05 Score=87.77 Aligned_cols=188 Identities=18% Similarity=0.158 Sum_probs=109.9
Q ss_pred Ccccccccccccccccc--ccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHh------
Q psy2894 142 VSEPLQTGIKAIDSIVP--IGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLE------ 213 (515)
Q Consensus 142 ~~epl~TGik~ID~l~p--igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~------ 213 (515)
..+.+.|||..+|.++. +-+|.-.+|.|++|+|||++++..+.+....+-.|+|+..-+..+++.+-.+.+.
T Consensus 251 ~~~~~~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~ 330 (509)
T PRK09302 251 SNERISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKM 330 (509)
T ss_pred ccccccCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHH
Confidence 45678999999999986 7899999999999999999987777776566667899999888776655443321
Q ss_pred -hcCCCCcEEEEEeCCC-CCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchh
Q psy2894 214 -KYGAMPYTIIVAATAS-DSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIF 291 (515)
Q Consensus 214 -~~~~~~~t~vv~~t~~-~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf 291 (515)
+.| +..++..... ...... ...+.+...+.+.+ ++|+||+|-+...... ..+-
T Consensus 331 ~~~g---~l~i~~~~~~~~~~~~~------~~~i~~~i~~~~~~-~vVIDslt~l~~~~~~---------------~~~~ 385 (509)
T PRK09302 331 EEKG---LLKIICARPESYGLEDH------LIIIKREIEEFKPS-RVAIDPLSALARGGSL---------------NEFR 385 (509)
T ss_pred hhcC---CceeecCCcccCCHHHH------HHHHHHHHHHcCCC-EEEEcCHHHHHHhCCH---------------HHHH
Confidence 111 1123322111 111111 11233333343444 7899999988643210 0111
Q ss_pred hhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEeecCCCCCCc-ccccccccCCeEEEecchhhcCCCcCcccc
Q psy2894 292 YLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAGDISAF-VPTNVISITDGQIFLDSSLFNSGIRPAINA 370 (515)
Q Consensus 292 ~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~~~~D~s~p-I~~~~~si~Dg~i~L~r~La~~g~~PAIdv 370 (515)
..+.+|...+.+ . .+|.+.|.++....-.+. -+..+.++.||-|.|+..--.....-.+.+
T Consensus 386 ~~l~~l~~~~k~-----------------~-~~t~l~t~~~~~~~g~~~~~~~~~~~l~D~vI~L~~~~~~~~~~R~l~I 447 (509)
T PRK09302 386 QFVIRLTDYLKS-----------------E-EITGLFTNLTPDFMGSHSITESHISSLTDTWILLQYVEINGEMNRALYV 447 (509)
T ss_pred HHHHHHHHHHHh-----------------C-CCeEEEEeccccccCCCCCCcCceEEeeeEEEEEEEeecCCeeEEEEEE
Confidence 122233322211 2 257777776655321122 234577899999999875433323334444
Q ss_pred CC
Q psy2894 371 GI 372 (515)
Q Consensus 371 ~~ 372 (515)
.+
T Consensus 448 ~K 449 (509)
T PRK09302 448 LK 449 (509)
T ss_pred EE
Confidence 43
No 69
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.18 E-value=1.1e-05 Score=78.45 Aligned_cols=116 Identities=24% Similarity=0.248 Sum_probs=70.5
Q ss_pred ccccccccccccc--ccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChH-HHHHHHHHHhhcCCCCcEE
Q psy2894 146 LQTGIKAIDSIVP--IGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKIS-SIKKTANLLEKYGAMPYTI 222 (515)
Q Consensus 146 l~TGik~ID~l~p--igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~-ev~~~~~~l~~~~~~~~t~ 222 (515)
+.|||..+|.++. +.+|.=..|.|++|+|||++++..+.+....+..|+|+...+... .+.++.+... .....+ +
T Consensus 1 i~TGi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~-~~~~~~-~ 78 (218)
T cd01394 1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRP-ERAASS-I 78 (218)
T ss_pred CCcchhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHCh-HhhhcC-E
Confidence 4699999999996 778888999999999999999888777655566788886543222 2222222110 112233 3
Q ss_pred EEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHHHHH
Q psy2894 223 IVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAY 270 (515)
Q Consensus 223 vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~A~ 270 (515)
++..+.+. .... ..+...+.+...+ --++|+||++.+.++.
T Consensus 79 ~~~~~~~~--~~~~----~~~~~~~~~~~~~-~~lvvIDsi~~l~~~~ 119 (218)
T cd01394 79 IVFEPMDF--NEQG----RAIQETETFADEK-VDLVVVDSATALYRLE 119 (218)
T ss_pred EEEeCCCH--HHHH----HHHHHHHHHHhcC-CcEEEEechHHhhhHH
Confidence 44443221 1111 1122222333333 5689999999986543
No 70
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=98.09 E-value=9.7e-05 Score=74.48 Aligned_cols=59 Identities=20% Similarity=0.313 Sum_probs=49.0
Q ss_pred cccccccccccc----------------cccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHH
Q psy2894 146 LQTGIKAIDSIV----------------PIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISS 204 (515)
Q Consensus 146 l~TGik~ID~l~----------------pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~e 204 (515)
+.|||+-+|.++ =+-+|.-.+|.|+||+|||+++++.+.+....+-.|+|+..-+..+.
T Consensus 4 ~~tGi~glD~~l~~~~~~~~~~~~~~~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~ 78 (259)
T TIGR03878 4 VPTGVEGLDELFFKVEIEEGKIVRKPLGGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANF 78 (259)
T ss_pred ccCCchhHHHhhccccccccccccccCCCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchH
Confidence 469999999997 35589999999999999999998888876555667899998765543
No 71
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.00 E-value=3.3e-05 Score=76.16 Aligned_cols=65 Identities=23% Similarity=0.244 Sum_probs=53.3
Q ss_pred cccccccccccccccc--ccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHH
Q psy2894 143 SEPLQTGIKAIDSIVP--IGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKK 207 (515)
Q Consensus 143 ~epl~TGik~ID~l~p--igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~ 207 (515)
.+.+.|||..+|.++. +-+|.-++|.|++|+|||+++...+.+....+-.|+|+..-+..+++.+
T Consensus 4 ~~~~~tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~ 70 (234)
T PRK06067 4 KEIISTGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLK 70 (234)
T ss_pred ceEEecCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHH
Confidence 4568999999999985 6689999999999999999987776665555667999999877665433
No 72
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.00 E-value=9.1e-05 Score=81.20 Aligned_cols=191 Identities=16% Similarity=0.112 Sum_probs=115.5
Q ss_pred CCccccccccccccccc--cccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhh--cC
Q psy2894 141 SVSEPLQTGIKAIDSIV--PIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEK--YG 216 (515)
Q Consensus 141 ~~~epl~TGik~ID~l~--pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~--~~ 216 (515)
...+.+.|||..+|.++ =+-+|.-++|.|+||+|||+|+++.+.+....+-.|+|+.--|..+++..=.+.+.= ..
T Consensus 240 ~~~~~~~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~ 319 (484)
T TIGR02655 240 SSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEE 319 (484)
T ss_pred ccccccCCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHH
Confidence 35678999999999998 378999999999999999999988888876666689999999888876655444310 00
Q ss_pred CCC--cEEEEEeCCC-CCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhh
Q psy2894 217 AMP--YTIIVAATAS-DSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYL 293 (515)
Q Consensus 217 ~~~--~t~vv~~t~~-~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~ 293 (515)
..+ +-.++..... ..+.. .+-.+-+...+.+.+ ++|+||++-+..+... + .+-..
T Consensus 320 ~~~~g~l~~~~~~p~~~~~~~------~~~~i~~~i~~~~~~-~vvIDsi~~~~~~~~~-----------~----~~r~~ 377 (484)
T TIGR02655 320 MEQQGLLKIICAYPESAGLED------HLQIIKSEIADFKPA-RIAIDSLSALARGVSN-----------N----AFRQF 377 (484)
T ss_pred HhhCCcEEEEEcccccCChHH------HHHHHHHHHHHcCCC-EEEEcCHHHHHHhcCH-----------H----HHHHH
Confidence 011 1223322111 11111 111222333334444 6789999987654311 0 01111
Q ss_pred hhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEeecC--CCCCCccc-ccccccCCeEEEecchhhcCCCcCcccc
Q psy2894 294 HSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQA--GDISAFVP-TNVISITDGQIFLDSSLFNSGIRPAINA 370 (515)
Q Consensus 294 ~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~~~--~D~s~pI~-~~~~si~Dg~i~L~r~La~~g~~PAIdv 370 (515)
+.+|..-+. .-.+|.+.+.++.+ +. .+++ .++-++.|+-|.|...-.+...+-+|-|
T Consensus 378 ~~~l~~~lk------------------~~~it~~~t~~~~~~~~~--~~~~~~~~s~l~D~ii~l~~~e~~g~~~r~i~V 437 (484)
T TIGR02655 378 VIGVTGYAK------------------QEEITGFFTNTSDQFMGS--HSITDSHISTITDTILMLQYVEIRGEMSRAINV 437 (484)
T ss_pred HHHHHHHHh------------------hCCCeEEEeecccccccC--CccCCCCeeEeeeEEEEEEEEecCCEEEEEEEE
Confidence 223332111 23467777777665 32 2333 3567899999999766665556666666
Q ss_pred CCC
Q psy2894 371 GIS 373 (515)
Q Consensus 371 ~~S 373 (515)
.++
T Consensus 438 ~K~ 440 (484)
T TIGR02655 438 FKM 440 (484)
T ss_pred EEc
Confidence 555
No 73
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.98 E-value=2.6e-05 Score=77.30 Aligned_cols=66 Identities=26% Similarity=0.380 Sum_probs=55.6
Q ss_pred ccccccccccccc--ccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHH
Q psy2894 146 LQTGIKAIDSIVP--IGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANL 211 (515)
Q Consensus 146 l~TGik~ID~l~p--igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~ 211 (515)
+.|||.-+|-++. +-+|.-++|.|+||+|||+++++.+.+....+-.|+|+...|...++.+-.+.
T Consensus 3 i~tGi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~ 70 (237)
T TIGR03877 3 VKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQ 70 (237)
T ss_pred cccCcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHH
Confidence 6799999999874 66999999999999999999988888765566779999999988876554443
No 74
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.95 E-value=3.8e-05 Score=75.24 Aligned_cols=117 Identities=16% Similarity=0.228 Sum_probs=72.2
Q ss_pred ccccccccccccc--ccCCcceeeecCCCCCccHHHHHHHHHhcCC------CeEEEEEEecCC--hHHHHHHHHHHh--
Q psy2894 146 LQTGIKAIDSIVP--IGKGQRELIIGDRQTGKSSIAIDIIINQKNK------NVTCIYVAIGQK--ISSIKKTANLLE-- 213 (515)
Q Consensus 146 l~TGik~ID~l~p--igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~------~~~~V~~~iGer--~~ev~~~~~~l~-- 213 (515)
+.||++.+|-++. +-+|....|.|++|+|||++++..+++.... +-.|+|+...+. .+.+.++.+.+.
T Consensus 1 ~~tG~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~ 80 (235)
T cd01123 1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLD 80 (235)
T ss_pred CCCCchhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccC
Confidence 4699999999986 8899999999999999999987777663221 246788876653 334444433221
Q ss_pred hcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHHH
Q psy2894 214 KYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAV 268 (515)
Q Consensus 214 ~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~ 268 (515)
....+++-.++.... ........ ..+-+.+.+.++--+||+||++.+.+
T Consensus 81 ~~~~~~~i~~~~~~~----~~~l~~~l--~~l~~~l~~~~~~~liVIDSis~~~~ 129 (235)
T cd01123 81 PEEVLDNIYVARAYN----SDHQLQLL--EELEAILIESSRIKLVIVDSVTALFR 129 (235)
T ss_pred hHhHhcCEEEEecCC----HHHHHHHH--HHHHHHHhhcCCeeEEEEeCcHHHHH
Confidence 123455544443221 11111111 11223334444777999999998764
No 75
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.95 E-value=2.3e-05 Score=81.50 Aligned_cols=111 Identities=19% Similarity=0.299 Sum_probs=77.7
Q ss_pred ccccccccccccccc---ccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCc
Q psy2894 144 EPLQTGIKAIDSIVP---IGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPY 220 (515)
Q Consensus 144 epl~TGik~ID~l~p---igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~ 220 (515)
+.+.||+..+|.++. +-+|.-..|+|++|+|||+|++..+.+....+-.|+|+..-+..+. +. ....|.--.
T Consensus 34 ~~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~--~~---a~~lGvd~~ 108 (321)
T TIGR02012 34 ETISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP--VY---ARKLGVDID 108 (321)
T ss_pred ceecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHH--HH---HHHcCCCHH
Confidence 468999999999998 5688999999999999999999988886656667888866554443 12 233333212
Q ss_pred EEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHHH
Q psy2894 221 TIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAV 268 (515)
Q Consensus 221 t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~ 268 (515)
-++++.+ +. .++ ++.+++.+...+.-.+||+||++-+..
T Consensus 109 ~l~v~~p-~~--~eq------~l~~~~~li~~~~~~lIVIDSv~al~~ 147 (321)
T TIGR02012 109 NLLVSQP-DT--GEQ------ALEIAETLVRSGAVDIIVVDSVAALVP 147 (321)
T ss_pred HeEEecC-CC--HHH------HHHHHHHHhhccCCcEEEEcchhhhcc
Confidence 2333332 22 333 345667776677778999999998764
No 76
>PRK04328 hypothetical protein; Provisional
Probab=97.94 E-value=4.3e-05 Score=76.52 Aligned_cols=67 Identities=24% Similarity=0.358 Sum_probs=56.7
Q ss_pred cccccccccccccc--ccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHH
Q psy2894 145 PLQTGIKAIDSIVP--IGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANL 211 (515)
Q Consensus 145 pl~TGik~ID~l~p--igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~ 211 (515)
.+.|||.-+|-++. +-+|.-++|.|+||+|||+++++.+.+....+-.|+|+...|.++++.+..+.
T Consensus 4 rv~tGi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~~~~~ 72 (249)
T PRK04328 4 RVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRNMRQ 72 (249)
T ss_pred eecCCchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHHHHH
Confidence 47899999999986 44899999999999999999988888865566679999999999886555443
No 77
>PRK09354 recA recombinase A; Provisional
Probab=97.93 E-value=2.5e-05 Score=81.93 Aligned_cols=111 Identities=21% Similarity=0.336 Sum_probs=80.3
Q ss_pred cccccccccccccccc---ccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCC-C
Q psy2894 143 SEPLQTGIKAIDSIVP---IGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGA-M 218 (515)
Q Consensus 143 ~epl~TGik~ID~l~p---igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~-~ 218 (515)
.+.+.||+..+|.++. +-+|.=..|+|++|+|||+|++..+.+....+-.|+|+..=+..+. +..+ ..|. +
T Consensus 38 ~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~--~~a~---~lGvdl 112 (349)
T PRK09354 38 VEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP--VYAK---KLGVDI 112 (349)
T ss_pred CceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHH--HHHH---HcCCCH
Confidence 3468999999999998 4467788899999999999999999887666778999988665553 2333 3333 3
Q ss_pred CcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHHH
Q psy2894 219 PYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAV 268 (515)
Q Consensus 219 ~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~ 268 (515)
++ ++++ ..+. .++ ++.+++.+...|.-.+||+||++-+..
T Consensus 113 d~-lli~-qp~~--~Eq------~l~i~~~li~s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 113 DN-LLVS-QPDT--GEQ------ALEIADTLVRSGAVDLIVVDSVAALVP 152 (349)
T ss_pred HH-eEEe-cCCC--HHH------HHHHHHHHhhcCCCCEEEEeChhhhcc
Confidence 33 3333 2222 333 356677777778888999999998764
No 78
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.91 E-value=6.4e-05 Score=73.48 Aligned_cols=117 Identities=20% Similarity=0.265 Sum_probs=72.0
Q ss_pred ccccccccccccccc--cccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEec-CChHHHHHHHHH-HhhcCCC
Q psy2894 143 SEPLQTGIKAIDSIV--PIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIG-QKISSIKKTANL-LEKYGAM 218 (515)
Q Consensus 143 ~epl~TGik~ID~l~--pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iG-er~~ev~~~~~~-l~~~~~~ 218 (515)
++.+.||+..+|-++ -+-+|.=..|.|++|+|||+++++...+....+-.|+|+..- ...+...++.+. + ...+
T Consensus 2 ~~~i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~--~~~~ 79 (225)
T PRK09361 2 DERLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDF--EELL 79 (225)
T ss_pred CccccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhCh--HhHh
Confidence 567899999999999 566899999999999999999988887765556678888775 112222222222 1 1223
Q ss_pred CcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHHHH
Q psy2894 219 PYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVA 269 (515)
Q Consensus 219 ~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~A 269 (515)
++ +++....+ ...+..... .++++.. .+--++|+||++.+...
T Consensus 80 ~~-~~~~~~~~--~~~~~~~i~---~~~~~~~--~~~~lvVIDsi~al~~~ 122 (225)
T PRK09361 80 SN-IIIFEPSS--FEEQSEAIR---KAEKLAK--ENVGLIVLDSATSLYRL 122 (225)
T ss_pred hC-eEEEeCCC--HHHHHHHHH---HHHHHHH--hcccEEEEeCcHHHhHH
Confidence 33 33333321 111111110 1222222 34558999999988654
No 79
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.91 E-value=0.00012 Score=71.78 Aligned_cols=63 Identities=24% Similarity=0.401 Sum_probs=50.8
Q ss_pred ccccccccccccc--ccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHH
Q psy2894 146 LQTGIKAIDSIVP--IGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKT 208 (515)
Q Consensus 146 l~TGik~ID~l~p--igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~ 208 (515)
+.|||..+|-++. +-+|.-++|.|++|+|||++++..+.+....+-.|+|+...+..+++.+.
T Consensus 2 i~tGi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~~ 66 (229)
T TIGR03881 2 LSTGVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIRQ 66 (229)
T ss_pred cCCChhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHH
Confidence 5799999999985 66999999999999999999877665544445568999988877665444
No 80
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.90 E-value=0.00022 Score=70.65 Aligned_cols=65 Identities=20% Similarity=0.234 Sum_probs=49.6
Q ss_pred ccccccccccccc--ccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHH
Q psy2894 146 LQTGIKAIDSIVP--IGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTAN 210 (515)
Q Consensus 146 l~TGik~ID~l~p--igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~ 210 (515)
+.+++.-+|-++. +-+|...+|.|++|+|||++++..+.+....+..|+|+...+...+..+...
T Consensus 6 ~~~~~~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~ 72 (230)
T PRK08533 6 IELSRDELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMM 72 (230)
T ss_pred EEEEEeeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHH
Confidence 3456666666664 6679999999999999999987777766455667899998888876655544
No 81
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.89 E-value=4.5e-05 Score=65.87 Aligned_cols=99 Identities=13% Similarity=0.225 Sum_probs=57.6
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHhcCCCe-EEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHH
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQKNKNV-TCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISA 239 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~-~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~ 239 (515)
+|+.++|+|++|+|||+++ ..++++..... .++|+.+............ ......+.....+...+
T Consensus 1 ~~~~~~l~G~~G~GKTtl~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~ 67 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLA-RALARELGPPGGGVIYIDGEDILEEVLDQLL------------LIIVGGKKASGSGELRL 67 (148)
T ss_pred CCCEEEEECCCCCcHHHHH-HHHHhccCCCCCCEEEECCEEccccCHHHHH------------hhhhhccCCCCCHHHHH
Confidence 4789999999999999995 66666543331 3455555433322211111 01111223333444445
Q ss_pred hhhhhhHHHHHHcCCcEEEEEechhHHHHHHHHHHHh
Q psy2894 240 YSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLL 276 (515)
Q Consensus 240 ~~a~~iAE~frd~G~~Vlli~Dsltr~a~A~reisl~ 276 (515)
....+.|++.. ..++++|++.++..........
T Consensus 68 ~~~~~~~~~~~----~~viiiDei~~~~~~~~~~~~~ 100 (148)
T smart00382 68 RLALALARKLK----PDVLILDEITSLLDAEQEALLL 100 (148)
T ss_pred HHHHHHHHhcC----CCEEEEECCcccCCHHHHHHHH
Confidence 55555555533 6899999999988776665443
No 82
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.88 E-value=2.7e-05 Score=81.09 Aligned_cols=110 Identities=20% Similarity=0.319 Sum_probs=78.0
Q ss_pred ccccccccccccccc---ccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCC-CC
Q psy2894 144 EPLQTGIKAIDSIVP---IGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGA-MP 219 (515)
Q Consensus 144 epl~TGik~ID~l~p---igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~-~~ 219 (515)
+.+.||+..+|.++. +-+|-=..|+|++|+|||+|++..+++....+-.|+|+..=+..+. +..+ ..|. ++
T Consensus 34 ~~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~--~~a~---~lGvd~~ 108 (325)
T cd00983 34 EVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDP--VYAK---KLGVDLD 108 (325)
T ss_pred ceecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHH--HHHH---HcCCCHH
Confidence 469999999999998 5578888899999999999999998886555667888886554442 2222 3333 23
Q ss_pred cEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHHH
Q psy2894 220 YTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAV 268 (515)
Q Consensus 220 ~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~ 268 (515)
+ ++++ ..+. .++ ++.+++.+...+.-.+||+||++-+..
T Consensus 109 ~-l~v~-~p~~--~eq------~l~i~~~li~s~~~~lIVIDSvaal~~ 147 (325)
T cd00983 109 N-LLIS-QPDT--GEQ------ALEIADSLVRSGAVDLIVVDSVAALVP 147 (325)
T ss_pred H-heec-CCCC--HHH------HHHHHHHHHhccCCCEEEEcchHhhcc
Confidence 3 3333 3222 232 355667777778888999999998764
No 83
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.88 E-value=7e-05 Score=72.93 Aligned_cols=117 Identities=16% Similarity=0.231 Sum_probs=70.2
Q ss_pred cccccccccccc--cccCCcceeeecCCCCCccHHHHHHHHHhcCCC------eEEEEEEecCC--hHHHHHHHHHHhh-
Q psy2894 146 LQTGIKAIDSIV--PIGKGQRELIIGDRQTGKSSIAIDIIINQKNKN------VTCIYVAIGQK--ISSIKKTANLLEK- 214 (515)
Q Consensus 146 l~TGik~ID~l~--pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~------~~~V~~~iGer--~~ev~~~~~~l~~- 214 (515)
+.||+..+|-++ -+-+|+-..|.|++|+|||++++..+.+....+ ..|+|+..... ...+.+..+.+..
T Consensus 1 i~tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~ 80 (226)
T cd01393 1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLD 80 (226)
T ss_pred CCCCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccc
Confidence 469999999988 488999999999999999999877766643333 66788886543 2233333222111
Q ss_pred -cCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHHHH
Q psy2894 215 -YGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVA 269 (515)
Q Consensus 215 -~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~A 269 (515)
...+++..++... ++ .+.... .-.+-++ ...+.--|||+|+++.+...
T Consensus 81 ~~~~~~~i~~~~~~--~~--~~~~~~--l~~~~~~-~~~~~~~lvVIDsis~l~~~ 129 (226)
T cd01393 81 PEEVLDNIYVARPY--NG--EQQLEI--VEELERI-MSSGRVDLVVVDSVAALFRK 129 (226)
T ss_pred hhhhhccEEEEeCC--CH--HHHHHH--HHHHHHH-hhcCCeeEEEEcCcchhhhh
Confidence 1234554444332 21 111111 1111111 22455568999999987654
No 84
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.87 E-value=5.9e-05 Score=77.69 Aligned_cols=120 Identities=17% Similarity=0.231 Sum_probs=77.8
Q ss_pred ccccccccccccccc--ccCCcceeeecCCCCCccHHHHHHHHHhcC------CCeEEEEEEecC--ChHHHHHHHHHHh
Q psy2894 144 EPLQTGIKAIDSIVP--IGKGQRELIIGDRQTGKSSIAIDIIINQKN------KNVTCIYVAIGQ--KISSIKKTANLLE 213 (515)
Q Consensus 144 epl~TGik~ID~l~p--igrGqr~~I~g~~g~GKt~l~~~~i~~~~~------~~~~~V~~~iGe--r~~ev~~~~~~l~ 213 (515)
..+.||+..+|.++. +-+|.-..|+|++|+|||+++++...+... .+-.|||+..-+ +.+.+.++.+.+.
T Consensus 75 ~~~~Tg~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~g 154 (310)
T TIGR02236 75 GKITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARG 154 (310)
T ss_pred CeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcC
Confidence 347799999999986 668999999999999999999888777321 233789999988 5666666555432
Q ss_pred h--cCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCC-cEEEEEechhHHHHH
Q psy2894 214 K--YGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGK-DALVVYDDLSKQAVA 269 (515)
Q Consensus 214 ~--~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~-~Vlli~Dsltr~a~A 269 (515)
- ...+++-.++.+...+ + +.. ..-.+.+++.+.+. --+||+||++-+-+.
T Consensus 155 l~~~~~~~~i~i~~~~~~~-~--~~~---lld~l~~~i~~~~~~~~lVVIDSisa~~r~ 207 (310)
T TIGR02236 155 LDPDEVLKNIYVARAYNSN-H--QML---LVEKAEDLIKELNNPVKLLIVDSLTSHFRA 207 (310)
T ss_pred CCHHHHhhceEEEecCCHH-H--HHH---HHHHHHHHHHhcCCCceEEEEecchHhhhH
Confidence 1 1124444444333222 1 111 11235566665443 349999999987543
No 85
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.68 E-value=0.00072 Score=66.10 Aligned_cols=63 Identities=19% Similarity=0.428 Sum_probs=50.7
Q ss_pred cccccccccc--ccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHH
Q psy2894 149 GIKAIDSIVP--IGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANL 211 (515)
Q Consensus 149 Gik~ID~l~p--igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~ 211 (515)
||+.+|-++. +-+|.-++|.|++|+|||+++++.+.+....+-.|+|+..-+..+++.+-.+.
T Consensus 1 Gi~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~ 65 (224)
T TIGR03880 1 GIPGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKS 65 (224)
T ss_pred CchhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHH
Confidence 6778888774 44899999999999999999988887765557678999999987766555444
No 86
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.66 E-value=0.00019 Score=74.54 Aligned_cols=121 Identities=17% Similarity=0.194 Sum_probs=77.6
Q ss_pred Ccccccccccccccccc--ccCCcceeeecCCCCCccHHHHHHHHHhc------CCCeEEEEEEecC--ChHHHHHHHHH
Q psy2894 142 VSEPLQTGIKAIDSIVP--IGKGQRELIIGDRQTGKSSIAIDIIINQK------NKNVTCIYVAIGQ--KISSIKKTANL 211 (515)
Q Consensus 142 ~~epl~TGik~ID~l~p--igrGqr~~I~g~~g~GKt~l~~~~i~~~~------~~~~~~V~~~iGe--r~~ev~~~~~~ 211 (515)
-...+.||++.+|.++- +-+|.=..|+|++|+|||++++...++.. ..+-.|+|+-.-+ +++.+.++.+.
T Consensus 74 ~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~ 153 (313)
T TIGR02238 74 KVLKITTGSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAER 153 (313)
T ss_pred cCceeCCCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 34579999999999985 77899999999999999999988776532 2345789999877 46666666655
Q ss_pred Hhh--cCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHHHH
Q psy2894 212 LEK--YGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVA 269 (515)
Q Consensus 212 l~~--~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~A 269 (515)
+.- ...+++ +.+ ..+.. .++.... -..+.+.+.+ +.--|||+||++-+.++
T Consensus 154 ~g~d~~~~l~~-i~~-~~~~~--~e~~~~~--l~~l~~~i~~-~~~~LvVIDSisal~r~ 206 (313)
T TIGR02238 154 FGVDPDAVLDN-ILY-ARAYT--SEHQMEL--LDYLAAKFSE-EPFRLLIVDSIMALFRV 206 (313)
T ss_pred cCCChHHhcCc-EEE-ecCCC--HHHHHHH--HHHHHHHhhc-cCCCEEEEEcchHhhhh
Confidence 421 123455 332 22222 1111111 1223334444 34557999999987543
No 87
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.65 E-value=0.00028 Score=77.72 Aligned_cols=69 Identities=26% Similarity=0.474 Sum_probs=58.4
Q ss_pred ccccccccccccccc--ccCCcceeeecCCCCCccHHHHHHHHHhcCC-CeEEEEEEecCChHHHHHHHHHH
Q psy2894 144 EPLQTGIKAIDSIVP--IGKGQRELIIGDRQTGKSSIAIDIIINQKNK-NVTCIYVAIGQKISSIKKTANLL 212 (515)
Q Consensus 144 epl~TGik~ID~l~p--igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~-~~~~V~~~iGer~~ev~~~~~~l 212 (515)
+.+.|||..+|.++. +-+|+-++|.|++|+|||+++++.+.+.... +-.|+|+..-|..+++.+-...+
T Consensus 11 ~ri~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~ 82 (509)
T PRK09302 11 EKLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASF 82 (509)
T ss_pred ccccCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHc
Confidence 467999999999974 8899999999999999999998887776544 66799999999998877666554
No 88
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.65 E-value=0.0003 Score=77.16 Aligned_cols=68 Identities=24% Similarity=0.361 Sum_probs=56.6
Q ss_pred cccccccccccccc--ccCCcceeeecCCCCCccHHHHHHHHHhcCC-CeEEEEEEecCChHHHHHHHHHH
Q psy2894 145 PLQTGIKAIDSIVP--IGKGQRELIIGDRQTGKSSIAIDIIINQKNK-NVTCIYVAIGQKISSIKKTANLL 212 (515)
Q Consensus 145 pl~TGik~ID~l~p--igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~-~~~~V~~~iGer~~ev~~~~~~l 212 (515)
.+.|||.-+|.++. +-+|.-.+|.|+||+|||+++++.+.+.... +-.|+|+...|..+++.+-.+.+
T Consensus 2 r~~TGI~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~ 72 (484)
T TIGR02655 2 KIRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSF 72 (484)
T ss_pred cCCCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHc
Confidence 47899999999987 7799999999999999999998888876433 55799999999888766555443
No 89
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.62 E-value=0.0003 Score=73.89 Aligned_cols=121 Identities=17% Similarity=0.175 Sum_probs=79.6
Q ss_pred Ccccccccccccccccc--ccCCcceeeecCCCCCccHHHHHHHHHhc------CCCeEEEEEEecC--ChHHHHHHHHH
Q psy2894 142 VSEPLQTGIKAIDSIVP--IGKGQRELIIGDRQTGKSSIAIDIIINQK------NKNVTCIYVAIGQ--KISSIKKTANL 211 (515)
Q Consensus 142 ~~epl~TGik~ID~l~p--igrGqr~~I~g~~g~GKt~l~~~~i~~~~------~~~~~~V~~~iGe--r~~ev~~~~~~ 211 (515)
-...+.||++.+|.++- |-+|.=..|+|++|+|||+|++...++.. +.+-.++|+-.-+ +++.+.++.+.
T Consensus 104 ~~~~isTG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~ 183 (344)
T PLN03187 104 SVVRITTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAER 183 (344)
T ss_pred cCceecCCcHhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 34579999999999986 66889999999999999999988776532 2345789999987 67777777665
Q ss_pred Hhh--cCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHHHH
Q psy2894 212 LEK--YGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVA 269 (515)
Q Consensus 212 l~~--~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~A 269 (515)
+.- ...+++ +. +....+ ...+.... -.+.+.+.+ +.--|||+||++-+.++
T Consensus 184 ~g~d~~~~l~~-I~-~~~~~~-~e~~~~~l---~~l~~~i~~-~~~~LvVIDSital~r~ 236 (344)
T PLN03187 184 FGMDADAVLDN-II-YARAYT-YEHQYNLL---LGLAAKMAE-EPFRLLIVDSVIALFRV 236 (344)
T ss_pred cCCChhhhcCe-EE-EecCCC-HHHHHHHH---HHHHHHHHh-cCCCEEEEeCcHHhhhc
Confidence 422 233555 22 233222 22222111 123334444 34558899999987543
No 90
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.58 E-value=0.00038 Score=67.11 Aligned_cols=103 Identities=17% Similarity=0.225 Sum_probs=62.4
Q ss_pred ccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecC-ChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHH
Q psy2894 159 IGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQ-KISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFI 237 (515)
Q Consensus 159 igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGe-r~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~ 237 (515)
+-+|+-..|.|++|+|||+++++...+....+..|+|+..-+ ....+.+..+... ...+++-+++ ... + +.....
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~-~~~~~~i~~~-~~~-~-~~~~~~ 84 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRP-ERALSNFIVF-EVF-D-FDEQGV 84 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCh-HHHhcCEEEE-ECC-C-HHHHHH
Confidence 457899999999999999999888877655566789999875 5555555443321 1123453333 221 1 111111
Q ss_pred HHhhhhhhHHHHHHcCCcEEEEEechhHHHHH
Q psy2894 238 SAYSGCTIGEYFRDHGKDALVVYDDLSKQAVA 269 (515)
Q Consensus 238 a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~A 269 (515)
.-..+.+.+.+. .--+||+||++.+.++
T Consensus 85 ---~~~~l~~~~~~~-~~~lvVIDSis~l~~~ 112 (209)
T TIGR02237 85 ---AIQKTSKFIDRD-SASLVVVDSFTALYRL 112 (209)
T ss_pred ---HHHHHHHHHhhc-CccEEEEeCcHHHhHH
Confidence 111233344333 3447889999998754
No 91
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.52 E-value=0.0017 Score=60.90 Aligned_cols=48 Identities=21% Similarity=0.380 Sum_probs=37.3
Q ss_pred eeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHH
Q psy2894 165 ELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLL 212 (515)
Q Consensus 165 ~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l 212 (515)
.+|.|+||+|||++++..+......+-.|+|+..-+..+++.+..+.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHc
Confidence 578999999999998777666655566689999988888776655443
No 92
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.49 E-value=0.0012 Score=71.92 Aligned_cols=107 Identities=17% Similarity=0.252 Sum_probs=68.8
Q ss_pred cccccccccccccc--cccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcE
Q psy2894 144 EPLQTGIKAIDSIV--PIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYT 221 (515)
Q Consensus 144 epl~TGik~ID~l~--pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t 221 (515)
+.+.|||.-+|-++ -+-+|+-++|.|++|+|||+|+++...+....+-.|+|+.--|..+ ++......-|.-...
T Consensus 74 ~ri~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~---qi~~ra~rlg~~~~~ 150 (454)
T TIGR00416 74 PRFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQ---QIKMRAIRLGLPEPN 150 (454)
T ss_pred CccccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHH---HHHHHHHHcCCChHH
Confidence 35899999999998 4899999999999999999998777666544444678886555443 344444333432222
Q ss_pred EEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHH
Q psy2894 222 IIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQ 266 (515)
Q Consensus 222 ~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~ 266 (515)
+.+....+ .. .+.+...+.+. -++|+||++-+
T Consensus 151 l~~~~e~~---~~---------~I~~~i~~~~~-~~vVIDSIq~l 182 (454)
T TIGR00416 151 LYVLSETN---WE---------QICANIEEENP-QACVIDSIQTL 182 (454)
T ss_pred eEEcCCCC---HH---------HHHHHHHhcCC-cEEEEecchhh
Confidence 33322211 11 22333333344 46999999874
No 93
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.49 E-value=0.0003 Score=80.74 Aligned_cols=109 Identities=18% Similarity=0.328 Sum_probs=78.4
Q ss_pred ccccccccccccccc---ccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCC-CC
Q psy2894 144 EPLQTGIKAIDSIVP---IGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGA-MP 219 (515)
Q Consensus 144 epl~TGik~ID~l~p---igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~-~~ 219 (515)
+.+.||+..+|.++. +-+|.-..|+|++|+|||+|++..+.+....+-.|+|+..-+..+. + ....-|. ++
T Consensus 39 ~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~--~---~A~~lGvDl~ 113 (790)
T PRK09519 39 SVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDP--D---YAKKLGVDTD 113 (790)
T ss_pred ceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhH--H---HHHHcCCChh
Confidence 378999999999998 5689999999999999999998888886666667899987776662 2 3333343 23
Q ss_pred cEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHH
Q psy2894 220 YTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQA 267 (515)
Q Consensus 220 ~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a 267 (515)
+ ++++.+ + +.++ ++.+++.+...+.--|||+||++-+.
T Consensus 114 ~-llv~~~-~--~~E~------~l~~i~~lv~~~~~~LVVIDSI~aL~ 151 (790)
T PRK09519 114 S-LLVSQP-D--TGEQ------ALEIADMLIRSGALDIVVIDSVAALV 151 (790)
T ss_pred H-eEEecC-C--CHHH------HHHHHHHHhhcCCCeEEEEcchhhhc
Confidence 3 333322 2 2233 34456666666788899999999666
No 94
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.49 E-value=0.00048 Score=71.39 Aligned_cols=120 Identities=18% Similarity=0.248 Sum_probs=76.0
Q ss_pred ccccccccccccccc--ccCCcceeeecCCCCCccHHHHHHHHHhcC------CCeEEEEEEecC--ChHHHHHHHHHHh
Q psy2894 144 EPLQTGIKAIDSIVP--IGKGQRELIIGDRQTGKSSIAIDIIINQKN------KNVTCIYVAIGQ--KISSIKKTANLLE 213 (515)
Q Consensus 144 epl~TGik~ID~l~p--igrGqr~~I~g~~g~GKt~l~~~~i~~~~~------~~~~~V~~~iGe--r~~ev~~~~~~l~ 213 (515)
..+.||+..+|-++. +-+|.-..|+|++|+|||+++++.+.+... .+..|+|+..-+ +.+.+.+..+.+.
T Consensus 82 ~~~~Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g 161 (317)
T PRK04301 82 GKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALG 161 (317)
T ss_pred CccCCCCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcC
Confidence 358899999999876 778999999999999999999888877321 234789999988 4666666555432
Q ss_pred h--cCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHHHH
Q psy2894 214 K--YGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVA 269 (515)
Q Consensus 214 ~--~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~A 269 (515)
. ...+++-.++-.. + ...+... --.+.+.+.+...--|||+||++-+-+.
T Consensus 162 ~~~~~~l~~i~~~~~~--~-~~~~~~~---~~~l~~~i~~~~~~~lvVIDSisa~~~~ 213 (317)
T PRK04301 162 LDPDEVLDNIHVARAY--N-SDHQMLL---AEKAEELIKEGENIKLVIVDSLTAHFRA 213 (317)
T ss_pred CChHhhhccEEEEeCC--C-HHHHHHH---HHHHHHHHhccCceeEEEEECchHHhhh
Confidence 1 2234553333322 1 1222111 1122233333133348999999987543
No 95
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.43 E-value=0.0014 Score=65.79 Aligned_cols=67 Identities=7% Similarity=0.137 Sum_probs=53.1
Q ss_pred ccccccccccccc-cccCCcceeeecCCCCCccHHHHHHHHHhcCC-CeEEEEEEecCChHHHHHHHHH
Q psy2894 145 PLQTGIKAIDSIV-PIGKGQRELIIGDRQTGKSSIAIDIIINQKNK-NVTCIYVAIGQKISSIKKTANL 211 (515)
Q Consensus 145 pl~TGik~ID~l~-pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~~-~~~~V~~~iGer~~ev~~~~~~ 211 (515)
-+.||+..+|-++ -+.+|.-.+|.|++|+|||+++++...+.... +..++|+..-+...++...+..
T Consensus 12 ~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~~ 80 (271)
T cd01122 12 EVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLLG 80 (271)
T ss_pred CCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHHH
Confidence 5679999999986 47789999999999999999987776665433 6667888888887777665543
No 96
>PTZ00035 Rad51 protein; Provisional
Probab=97.35 E-value=0.0006 Score=71.49 Aligned_cols=123 Identities=14% Similarity=0.174 Sum_probs=74.4
Q ss_pred cCCCcccccccccccccccc--ccCCcceeeecCCCCCccHHHHHHHHHhc------CCCeEEEEEEecC--ChHHHHHH
Q psy2894 139 RQSVSEPLQTGIKAIDSIVP--IGKGQRELIIGDRQTGKSSIAIDIIINQK------NKNVTCIYVAIGQ--KISSIKKT 208 (515)
Q Consensus 139 R~~~~epl~TGik~ID~l~p--igrGqr~~I~g~~g~GKt~l~~~~i~~~~------~~~~~~V~~~iGe--r~~ev~~~ 208 (515)
+..-...+.||++.+|.++- +-+|.-..|+|++|+|||++++....+.. ..+-.|+|+-.-+ +++.+.++
T Consensus 93 ~~~~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~i 172 (337)
T PTZ00035 93 ARKNIIRITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQI 172 (337)
T ss_pred hhccCccccCCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHH
Confidence 33445679999999999984 77899999999999999999865554432 1345678887654 34555555
Q ss_pred HHHHhh--cCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHHH
Q psy2894 209 ANLLEK--YGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAV 268 (515)
Q Consensus 209 ~~~l~~--~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~ 268 (515)
.+.+.- ..++++-.++ ...++ ..+.... ..+.+.+. +++--|||+||++-+.+
T Consensus 173 a~~~g~~~~~~l~nI~~~--~~~~~-e~~~~~l---~~~~~~l~-~~~~~lvVIDSital~r 227 (337)
T PTZ00035 173 AERFGLDPEDVLDNIAYA--RAYNH-EHQMQLL---SQAAAKMA-EERFALLIVDSATALFR 227 (337)
T ss_pred HHHhCCChHhHhhceEEE--ccCCH-HHHHHHH---HHHHHHhh-ccCccEEEEECcHHhhh
Confidence 544211 1234552222 22221 1221111 11223333 35667999999998754
No 97
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=97.33 E-value=0.0011 Score=69.71 Aligned_cols=120 Identities=15% Similarity=0.187 Sum_probs=77.1
Q ss_pred cccccccccccccccc--ccCCcceeeecCCCCCccHHHHHHHHHhc------CCCeEEEEEEecC--ChHHHHHHHHHH
Q psy2894 143 SEPLQTGIKAIDSIVP--IGKGQRELIIGDRQTGKSSIAIDIIINQK------NKNVTCIYVAIGQ--KISSIKKTANLL 212 (515)
Q Consensus 143 ~epl~TGik~ID~l~p--igrGqr~~I~g~~g~GKt~l~~~~i~~~~------~~~~~~V~~~iGe--r~~ev~~~~~~l 212 (515)
...+.||++.+|.++. +-+|.=..|+|++|+|||++++....+-. ..+-.|+|+-.-+ +++.+.++.+.+
T Consensus 102 ~~~i~tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~ 181 (342)
T PLN03186 102 IIQITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERF 181 (342)
T ss_pred cceeCCCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHc
Confidence 3469999999999875 66889999999999999999977765521 2334789999888 566677766654
Q ss_pred hh--cCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHHHH
Q psy2894 213 EK--YGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVA 269 (515)
Q Consensus 213 ~~--~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~A 269 (515)
.- ...+++-.++-+. + ...+..... .+++.+ ..++=-|||+||++-+.+.
T Consensus 182 ~~~~~~~l~~i~~~~~~-~--~e~~~~ll~---~~~~~~-~~~~~~LIVIDSI~alfr~ 233 (342)
T PLN03186 182 GLNGADVLENVAYARAY-N--TDHQSELLL---EAASMM-AETRFALMIVDSATALYRT 233 (342)
T ss_pred CCChhhhccceEEEecC-C--HHHHHHHHH---HHHHHh-hccCCCEEEEeCcHHHHHH
Confidence 21 2345553333322 1 222221111 222333 3345568999999988643
No 98
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=97.31 E-value=0.00042 Score=72.07 Aligned_cols=109 Identities=22% Similarity=0.330 Sum_probs=70.3
Q ss_pred cccccccccccccccc---cCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCC-CC
Q psy2894 144 EPLQTGIKAIDSIVPI---GKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGA-MP 219 (515)
Q Consensus 144 epl~TGik~ID~l~pi---grGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~-~~ 219 (515)
+.+.||+.++|..+++ -+|.=+=|+|++++|||+|++..+++....+..|+|+-+-- .-. .++.+. -|. ++
T Consensus 32 ~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~-~ld-~~~a~~---lGvdl~ 106 (322)
T PF00154_consen 32 EVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEH-ALD-PEYAES---LGVDLD 106 (322)
T ss_dssp -EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS-----HHHHHH---TT--GG
T ss_pred ceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcc-cch-hhHHHh---cCcccc
Confidence 5789999999999984 35777889999999999999999998666677888887632 211 122333 343 45
Q ss_pred cEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHH
Q psy2894 220 YTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQA 267 (515)
Q Consensus 220 ~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a 267 (515)
+- +|+-+ +. .+ -|+.++|.+...|.-.++|+||+...+
T Consensus 107 rl-lv~~P-~~--~E------~al~~~e~lirsg~~~lVVvDSv~al~ 144 (322)
T PF00154_consen 107 RL-LVVQP-DT--GE------QALWIAEQLIRSGAVDLVVVDSVAALV 144 (322)
T ss_dssp GE-EEEE--SS--HH------HHHHHHHHHHHTTSESEEEEE-CTT-B
T ss_pred ce-EEecC-Cc--HH------HHHHHHHHHhhcccccEEEEecCcccC
Confidence 53 34333 22 22 356788998888887789999987653
No 99
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.23 E-value=0.0017 Score=70.71 Aligned_cols=106 Identities=24% Similarity=0.294 Sum_probs=69.3
Q ss_pred cccccccccccccc--ccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCC-CCcE
Q psy2894 145 PLQTGIKAIDSIVP--IGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGA-MPYT 221 (515)
Q Consensus 145 pl~TGik~ID~l~p--igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~-~~~t 221 (515)
.+.|||.-+|-++. +-+|+-.+|.|++|+|||+|+++...+....+-.|+|+..-|..+.+ ......-|. .++
T Consensus 61 ri~TGi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi---~~ra~rlg~~~~~- 136 (446)
T PRK11823 61 RISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQI---KLRAERLGLPSDN- 136 (446)
T ss_pred cccCCcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHH---HHHHHHcCCChhc-
Confidence 58899999999985 77899999999999999999877766655445567888865555444 333333333 233
Q ss_pred EEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHH
Q psy2894 222 IIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQA 267 (515)
Q Consensus 222 ~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a 267 (515)
+.+....+ ..+ +-+.+ ++.+--++|+||++.+.
T Consensus 137 l~~~~e~~---l~~---------i~~~i-~~~~~~lVVIDSIq~l~ 169 (446)
T PRK11823 137 LYLLAETN---LEA---------ILATI-EEEKPDLVVIDSIQTMY 169 (446)
T ss_pred EEEeCCCC---HHH---------HHHHH-HhhCCCEEEEechhhhc
Confidence 33332211 111 12222 23455689999998764
No 100
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.21 E-value=0.0015 Score=67.90 Aligned_cols=119 Identities=17% Similarity=0.204 Sum_probs=70.8
Q ss_pred cccccccccccccccc--ccCCcceeeecCCCCCccHHHHHHHHH-hc-----CCCeEEEEEEecC--ChHHHHHHHHHH
Q psy2894 143 SEPLQTGIKAIDSIVP--IGKGQRELIIGDRQTGKSSIAIDIIIN-QK-----NKNVTCIYVAIGQ--KISSIKKTANLL 212 (515)
Q Consensus 143 ~epl~TGik~ID~l~p--igrGqr~~I~g~~g~GKt~l~~~~i~~-~~-----~~~~~~V~~~iGe--r~~ev~~~~~~l 212 (515)
...+.||++.+|.++. +-+|.=..|.|++|+|||++++....+ +. ..+-.|+|+-.-+ +.+.+.++.+.+
T Consensus 75 ~~~~~tg~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~ 154 (316)
T TIGR02239 75 VIQLTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERY 154 (316)
T ss_pred cceeCCCCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 3468999999999875 667999999999999999998766553 21 1224688888766 344444444432
Q ss_pred hh--cCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHHH
Q psy2894 213 EK--YGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAV 268 (515)
Q Consensus 213 ~~--~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~ 268 (515)
.- ...+++-.+..+.. +..+..... .+.+.+.+ ++--|||+||++-+.+
T Consensus 155 ~~~~~~~l~~i~~~~~~~---~~~~~~~l~---~~~~~~~~-~~~~LvVIDSI~al~r 205 (316)
T TIGR02239 155 GLNPEDVLDNVAYARAYN---TDHQLQLLQ---QAAAMMSE-SRFALLIVDSATALYR 205 (316)
T ss_pred CCChHHhhccEEEEecCC---hHHHHHHHH---HHHHhhcc-CCccEEEEECcHHHhh
Confidence 11 12344433332221 112211111 12233333 4556899999998753
No 101
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.21 E-value=0.0018 Score=68.92 Aligned_cols=108 Identities=20% Similarity=0.272 Sum_probs=68.2
Q ss_pred ccccccccccccccc--ccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcE
Q psy2894 144 EPLQTGIKAIDSIVP--IGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYT 221 (515)
Q Consensus 144 epl~TGik~ID~l~p--igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t 221 (515)
+.+.|||.-+|-++. +.+|+-++|.|++|+|||+|+++...+....+-.++|+.--|..+. +......-|.-...
T Consensus 62 ~ri~TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~q---i~~Ra~rlg~~~~~ 138 (372)
T cd01121 62 ERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQ---IKLRADRLGISTEN 138 (372)
T ss_pred CccccCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHH---HHHHHHHcCCCccc
Confidence 468999999999984 8899999999999999999987766665444456778765444433 33333333432222
Q ss_pred EEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHH
Q psy2894 222 IIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQA 267 (515)
Q Consensus 222 ~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a 267 (515)
+.+....+ ..+ +-+.+. ..+--+||+||++.+.
T Consensus 139 l~l~~e~~---le~---------I~~~i~-~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 139 LYLLAETN---LED---------ILASIE-ELKPDLVIIDSIQTVY 171 (372)
T ss_pred EEEEccCc---HHH---------HHHHHH-hcCCcEEEEcchHHhh
Confidence 33332211 111 222222 2345679999998763
No 102
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.89 E-value=0.0034 Score=63.31 Aligned_cols=121 Identities=14% Similarity=0.268 Sum_probs=73.7
Q ss_pred ccccccccccccccc--cccCCcceeeecCCCCCccHHHHHHHHHhc------CCCeEEEEEEecC--ChHHHHHHHHHH
Q psy2894 143 SEPLQTGIKAIDSIV--PIGKGQRELIIGDRQTGKSSIAIDIIINQK------NKNVTCIYVAIGQ--KISSIKKTANLL 212 (515)
Q Consensus 143 ~epl~TGik~ID~l~--pigrGqr~~I~g~~g~GKt~l~~~~i~~~~------~~~~~~V~~~iGe--r~~ev~~~~~~l 212 (515)
...+-||++.+|.++ -|-.|+=.=|+|++|+|||.|++...++.. +.+-.+||+-..- +.+.+.++.+..
T Consensus 17 ~~~i~Tg~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~ 96 (256)
T PF08423_consen 17 WSRISTGCKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERF 96 (256)
T ss_dssp S-EE--SSHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHT
T ss_pred CCeeCCCCHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhcc
Confidence 356899999999998 466788888999999999999988877631 3456789987665 334444444321
Q ss_pred --hhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHHHHH
Q psy2894 213 --EKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAY 270 (515)
Q Consensus 213 --~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~A~ 270 (515)
....++++-.+.-.. +- ..+. .... .+...+.+ .+=-|||+||++.+-+..
T Consensus 97 ~~~~~~~l~~I~v~~~~-~~--~~l~-~~L~--~l~~~l~~-~~ikLIVIDSIaalfr~e 149 (256)
T PF08423_consen 97 GLDPEEILDNIFVIRVF-DL--EELL-ELLE--QLPKLLSE-SKIKLIVIDSIAALFRSE 149 (256)
T ss_dssp TS-HHHHHHTEEEEE-S-SH--HHHH-HHHH--HHHHHHHH-SCEEEEEEETSSHHHHHH
T ss_pred ccccchhhhceeeeecC-CH--HHHH-HHHH--HHHhhccc-cceEEEEecchHHHHHHH
Confidence 112345664444332 21 2222 2211 22334443 456799999999987653
No 103
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.88 E-value=0.0018 Score=64.19 Aligned_cols=28 Identities=32% Similarity=0.437 Sum_probs=21.6
Q ss_pred ceeeecCCCCCccHHHHHHHHHhcCCCeE
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQKNKNVT 192 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~~~~~~ 192 (515)
-+++.||||+|||||| ..|++..+.+++
T Consensus 52 h~lf~GPPG~GKTTLA-~IIA~e~~~~~~ 79 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLA-RIIANELGVNFK 79 (233)
T ss_dssp EEEEESSTTSSHHHHH-HHHHHHCT--EE
T ss_pred eEEEECCCccchhHHH-HHHHhccCCCeE
Confidence 4789999999999996 778877776654
No 104
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.74 E-value=0.0047 Score=58.42 Aligned_cols=68 Identities=22% Similarity=0.436 Sum_probs=42.5
Q ss_pred ccccccccccccc--ccCCcceeeecCCCCCccHHHHHHHHHhcC----------CCeEEEEEEecCChHHHHHHHHHHh
Q psy2894 146 LQTGIKAIDSIVP--IGKGQRELIIGDRQTGKSSIAIDIIINQKN----------KNVTCIYVAIGQKISSIKKTANLLE 213 (515)
Q Consensus 146 l~TGik~ID~l~p--igrGqr~~I~g~~g~GKt~l~~~~i~~~~~----------~~~~~V~~~iGer~~ev~~~~~~l~ 213 (515)
+.|+++..|-+++ +.+|+-..|.|++|+|||+++++++..... ....++|+..-...+++.+-+..+.
T Consensus 14 ~~~~~~~~~~li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 14 LDTGFPPLDWLIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALL 93 (193)
T ss_dssp HHS------EEETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHH
T ss_pred ccCCCCCcceeECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHh
Confidence 4445555555553 237999999999999999999887776432 3456788887777777877776654
No 105
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=96.73 E-value=0.0068 Score=64.31 Aligned_cols=105 Identities=16% Similarity=0.260 Sum_probs=68.9
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHH-h
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSAS-M 234 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~-~ 234 (515)
|+....||..+|=|-||||||+++++.+-.-++.+- ++|+..=--...|.+.+ ...++.++++-++-++-|.--. .
T Consensus 4 FF~~~~G~TLLIKG~PGTGKTtfaLelL~~l~~~~~-v~YISTRVd~d~vy~~y--~~~~~~i~~~~vlDatQd~~~~~~ 80 (484)
T PF07088_consen 4 FFTQEPGQTLLIKGEPGTGKTTFALELLNSLKDHGN-VMYISTRVDQDTVYEMY--PWIEESIDPTNVLDATQDPFELPL 80 (484)
T ss_pred hhcCCCCcEEEEecCCCCCceeeehhhHHHHhccCC-eEEEEeccCHHHHHHhh--hhhccccChhhhhhhccchhhccc
Confidence 567789999999999999999999887766554442 47888766666666555 5556778888888666542110 0
Q ss_pred hHHHHh---hhhhhHHHHH--H-cCCcEEEEEech
Q psy2894 235 QFISAY---SGCTIGEYFR--D-HGKDALVVYDDL 263 (515)
Q Consensus 235 r~~a~~---~a~~iAE~fr--d-~G~~Vlli~Dsl 263 (515)
....|+ .--+.-++|- + .+++.+|++||-
T Consensus 81 ~~~vp~~~l~~ds~~~f~~~i~~~~k~~iI~~DSW 115 (484)
T PF07088_consen 81 DKDVPFERLDIDSFRDFVDKINEAGKKPIIAFDSW 115 (484)
T ss_pred cccCcccccCHHHHHHHHHHhhhcccCcEEEEecH
Confidence 111222 0112223332 2 589999999993
No 106
>PRK05973 replicative DNA helicase; Provisional
Probab=96.66 E-value=0.0086 Score=59.91 Aligned_cols=53 Identities=9% Similarity=0.249 Sum_probs=42.7
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHH
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTAN 210 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~ 210 (515)
-+-+|+=++|.|+||+|||+++++.+.+....+-.++|+..-|..+++.+=..
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R~~ 112 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDRLR 112 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHH
Confidence 45689999999999999999998888876555667899999888776655443
No 107
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.45 E-value=0.017 Score=50.32 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=26.9
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHhc-CCCeEEEEEEecC
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQK-NKNVTCIYVAIGQ 200 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~~-~~~~~~V~~~iGe 200 (515)
.+.-+.|.|++|+|||+++ ..++++. ..+..++|+.+.+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~-~~i~~~~~~~~~~v~~~~~~~ 57 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLA-RAIANELFRPGAPFLYLNASD 57 (151)
T ss_pred CCCeEEEECCCCCCHHHHH-HHHHHHhhcCCCCeEEEehhh
Confidence 4677999999999999994 7776653 2233345555544
No 108
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.43 E-value=0.0083 Score=63.75 Aligned_cols=77 Identities=19% Similarity=0.265 Sum_probs=52.0
Q ss_pred cceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhh
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSG 242 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a 242 (515)
--+-+.||||||||||| ..|+...+.++. .+---.+.|.|+.+ .
T Consensus 49 ~SmIl~GPPG~GKTTlA-~liA~~~~~~f~----~~sAv~~gvkdlr~-------------------------------i 92 (436)
T COG2256 49 HSMILWGPPGTGKTTLA-RLIAGTTNAAFE----ALSAVTSGVKDLRE-------------------------------I 92 (436)
T ss_pred ceeEEECCCCCCHHHHH-HHHHHhhCCceE----EeccccccHHHHHH-------------------------------H
Confidence 35678999999999996 666665555543 11111222222222 2
Q ss_pred hhhHHHHHHcCCcEEEEEechhHHHHHHHHHHH
Q psy2894 243 CTIGEYFRDHGKDALVVYDDLSKQAVAYRQISL 275 (515)
Q Consensus 243 ~~iAE~frd~G~~Vlli~Dsltr~a~A~reisl 275 (515)
+.-|+.++..|+.+++++|.+.||-.++.+.-|
T Consensus 93 ~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lL 125 (436)
T COG2256 93 IEEARKNRLLGRRTILFLDEIHRFNKAQQDALL 125 (436)
T ss_pred HHHHHHHHhcCCceEEEEehhhhcChhhhhhhh
Confidence 334667777899999999999999999998643
No 109
>PF13173 AAA_14: AAA domain
Probab=96.37 E-value=0.013 Score=52.40 Aligned_cols=84 Identities=13% Similarity=0.223 Sum_probs=50.4
Q ss_pred CcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhh
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYS 241 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~ 241 (515)
++-+.|.|++|+||||++ ..++......-.++|+- .+++...+...+.
T Consensus 2 ~~~~~l~G~R~vGKTtll-~~~~~~~~~~~~~~yi~------------------------------~~~~~~~~~~~~~- 49 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLL-KQLAKDLLPPENILYIN------------------------------FDDPRDRRLADPD- 49 (128)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHhcccccceeec------------------------------cCCHHHHHHhhhh-
Confidence 355789999999999995 44443221111122222 2333333322221
Q ss_pred hhhhHHHHHHc--CCcEEEEEechhHHHHHHHHHHHhcCCC
Q psy2894 242 GCTIGEYFRDH--GKDALVVYDDLSKQAVAYRQISLLLKRP 280 (515)
Q Consensus 242 a~~iAE~frd~--G~~Vlli~Dsltr~a~A~reisl~l~~p 280 (515)
+.+++++. .+..++++|++.+.......+-.+....
T Consensus 50 ---~~~~~~~~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~ 87 (128)
T PF13173_consen 50 ---LLEYFLELIKPGKKYIFIDEIQYLPDWEDALKFLVDNG 87 (128)
T ss_pred ---hHHHHHHhhccCCcEEEEehhhhhccHHHHHHHHHHhc
Confidence 55666654 4678899999999887777776666544
No 110
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.37 E-value=0.012 Score=55.80 Aligned_cols=87 Identities=16% Similarity=0.190 Sum_probs=56.4
Q ss_pred eeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCC-hHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhh
Q psy2894 165 ELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQK-ISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGC 243 (515)
Q Consensus 165 ~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer-~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~ 243 (515)
++|.|++|+|||++|.+.+.. .. -.++|++..+. ..|+.+-++..++.-..+-+++ + ...
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-~~--~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~------E----------~~~ 62 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-LG--GPVTYIATAEAFDDEMAERIARHRKRRPAHWRTI------E----------TPR 62 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-cC--CCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEe------e----------cHH
Confidence 579999999999998655443 22 25788898876 5667777776655432222221 1 123
Q ss_pred hhHHHHHHc-CCcEEEEEechhHHHHHHH
Q psy2894 244 TIGEYFRDH-GKDALVVYDDLSKQAVAYR 271 (515)
Q Consensus 244 ~iAE~frd~-G~~Vlli~Dsltr~a~A~r 271 (515)
.+++.+.+. +.+ .+++|++|-|.....
T Consensus 63 ~l~~~l~~~~~~~-~VLIDclt~~~~n~l 90 (169)
T cd00544 63 DLVSALKELDPGD-VVLIDCLTLWVTNLL 90 (169)
T ss_pred HHHHHHHhcCCCC-EEEEEcHhHHHHHhC
Confidence 345555543 444 799999999987765
No 111
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.25 E-value=0.0056 Score=53.89 Aligned_cols=90 Identities=18% Similarity=0.186 Sum_probs=49.4
Q ss_pred CcceeeecCCCCCccHHHHHHHHHhcCC------CeEEEEEEecCChHHHHHHHHHHhhc-CCCCcEEEEEeCCCCCHHh
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQKNK------NVTCIYVAIGQKISSIKKTANLLEKY-GAMPYTIIVAATASDSASM 234 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~~~~------~~~~V~~~iGer~~ev~~~~~~l~~~-~~~~~t~vv~~t~~~~~~~ 234 (515)
++-+.|.|++|+|||++ +..++++... +..++++-+.... ....+.+.+.+. +.-... .. ...
T Consensus 4 ~~~~~i~G~~G~GKT~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~~-------~~-~~~ 73 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTL-IKRLARQLNAEAEIKNHPDVIYVNCPSSR-TPRDFAQEILEALGLPLKS-------RQ-TSD 73 (131)
T ss_dssp ---EEEEE-TTSSHHHH-HHHHHHHHHHHHHHCCCEEEEEEEHHHHS-SHHHHHHHHHHHHT-SSSS-------TS--HH
T ss_pred CcccEEEcCCCCCHHHH-HHHHHHHhHHhhhccCCCcEEEEEeCCCC-CHHHHHHHHHHHhCccccc-------cC-CHH
Confidence 45578999999999999 5777765322 4556777777666 555666654331 111111 01 111
Q ss_pred hHHHHhhhhhhHHHHHHcCCcEEEEEechhHHH
Q psy2894 235 QFISAYSGCTIGEYFRDHGKDALVVYDDLSKQA 267 (515)
Q Consensus 235 r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a 267 (515)
.+ .-.+.+++...+. ++|++|+.-.+.
T Consensus 74 ~l-----~~~~~~~l~~~~~-~~lviDe~~~l~ 100 (131)
T PF13401_consen 74 EL-----RSLLIDALDRRRV-VLLVIDEADHLF 100 (131)
T ss_dssp HH-----HHHHHHHHHHCTE-EEEEEETTHHHH
T ss_pred HH-----HHHHHHHHHhcCC-eEEEEeChHhcC
Confidence 11 1233444444444 899999998864
No 112
>PF05729 NACHT: NACHT domain
Probab=96.15 E-value=0.022 Score=51.58 Aligned_cols=88 Identities=16% Similarity=0.154 Sum_probs=48.1
Q ss_pred ceeeecCCCCCccHHHHHHHHHh----cCCC---eEEEEEEecCChHHHH--HHHHHHhhcCCCCcEEEEEeCCCCCHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ----KNKN---VTCIYVAIGQKISSIK--KTANLLEKYGAMPYTIIVAATASDSASM 234 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~----~~~~---~~~V~~~iGer~~ev~--~~~~~l~~~~~~~~t~vv~~t~~~~~~~ 234 (515)
.+.|.|++|+|||+++ ..++.+ .... ...+|...++...... .+.+.+.... ..... ...
T Consensus 2 ~l~I~G~~G~GKStll-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---------~~~~~-~~~ 70 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL-RKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQL---------PESIA-PIE 70 (166)
T ss_pred EEEEECCCCCChHHHH-HHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhh---------ccchh-hhH
Confidence 3679999999999995 666653 1111 3456666665554322 1222221100 00000 000
Q ss_pred hHHHHhhhhhhHHHHHHcCCcEEEEEechhHHHHHHH
Q psy2894 235 QFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYR 271 (515)
Q Consensus 235 r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~A~r 271 (515)
. ....+.++..++++|+|.+--.....+
T Consensus 71 ~---------~~~~~~~~~~~~llilDglDE~~~~~~ 98 (166)
T PF05729_consen 71 E---------LLQELLEKNKRVLLILDGLDELEEQDQ 98 (166)
T ss_pred H---------HHHHHHHcCCceEEEEechHhcccchh
Confidence 0 233445678899999999887766443
No 113
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.09 E-value=0.078 Score=49.51 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=31.4
Q ss_pred eeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHH
Q psy2894 165 ELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANL 211 (515)
Q Consensus 165 ~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~ 211 (515)
+++.|++|+|||+++......-...+..++++.++-+..+..+.+..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~ 49 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRV 49 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHH
Confidence 57899999999999744433333345556778888766665554444
No 114
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.03 E-value=0.02 Score=57.46 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=30.7
Q ss_pred ceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHH
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTA 209 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~ 209 (515)
|+.|+|++|+|||++++..+.. ......+||+...+...+..+++
T Consensus 15 r~viIG~sGSGKT~li~~lL~~-~~~~f~~I~l~t~~~n~~~~~~i 59 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYY-LRHKFDHIFLITPEYNNEYYKYI 59 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHh-hcccCCEEEEEecCCchhhhhhc
Confidence 7899999999999997666554 33333466666666555554443
No 115
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.95 E-value=0.03 Score=57.32 Aligned_cols=113 Identities=19% Similarity=0.285 Sum_probs=72.6
Q ss_pred cccccccccccccccc--ccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEe-c-CChHHHHHHHHHHhhcCCC
Q psy2894 143 SEPLQTGIKAIDSIVP--IGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAI-G-QKISSIKKTANLLEKYGAM 218 (515)
Q Consensus 143 ~epl~TGik~ID~l~p--igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~i-G-er~~ev~~~~~~l~~~~~~ 218 (515)
.+.+.||.+.+|.++. +-+|.=.=|+|++|+|||++|++.+++-...+-.|+|+-. | -+++....+-... +
T Consensus 39 ~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~-----~ 113 (279)
T COG0468 39 IEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGVDL-----L 113 (279)
T ss_pred cccccccchhHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCHHHHHHHHHhh-----h
Confidence 6689999999999986 2356677899999999999999999985555545666543 2 2333333333332 2
Q ss_pred CcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCC--cEEEEEechhHHHHHH
Q psy2894 219 PYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGK--DALVVYDDLSKQAVAY 270 (515)
Q Consensus 219 ~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~--~Vlli~Dsltr~a~A~ 270 (515)
++ ++++..+..- -++.+++.+...+. ==|+|+||++-+-++.
T Consensus 114 d~--l~v~~~~~~e--------~q~~i~~~~~~~~~~~i~LvVVDSvaa~~r~~ 157 (279)
T COG0468 114 DN--LLVSQPDTGE--------QQLEIAEKLARSGAEKIDLLVVDSVAALVRAE 157 (279)
T ss_pred cc--eeEecCCCHH--------HHHHHHHHHHHhccCCCCEEEEecCcccchhh
Confidence 22 4444444422 23344455544444 6789999999776554
No 116
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=95.83 E-value=0.0042 Score=59.47 Aligned_cols=101 Identities=22% Similarity=0.297 Sum_probs=52.7
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHhc-CCCeEEEEEEecCChH--HHHHHHH----------HHhhcCCCCcEEEEEe
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQK-NKNVTCIYVAIGQKIS--SIKKTAN----------LLEKYGAMPYTIIVAA 226 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~~-~~~~~~V~~~iGer~~--ev~~~~~----------~l~~~~~~~~t~vv~~ 226 (515)
+.++.+.|.|++|+|||+| +..+++.. ..+..++|+...+... .+..++. .+.. ..-+.+..-..
T Consensus 18 ~~~~~~~l~G~rg~GKTsL-l~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~ 95 (234)
T PF01637_consen 18 GPSQHILLYGPRGSGKTSL-LKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGI-SIPSITLEKIS 95 (234)
T ss_dssp --SSEEEEEESTTSSHHHH-HHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHH-HCCTSTTEEEE
T ss_pred hcCcEEEEEcCCcCCHHHH-HHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhh-hcccccchhhh
Confidence 4578999999999999999 57777764 3343456665533332 2333311 1110 00000000000
Q ss_pred CCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHH
Q psy2894 227 TASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQA 267 (515)
Q Consensus 227 t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a 267 (515)
. ...-.+...-..+.+++...+++++|++|++..++
T Consensus 96 ~-----~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~ 131 (234)
T PF01637_consen 96 K-----DLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLA 131 (234)
T ss_dssp C-----TS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGG
T ss_pred h-----cchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHh
Confidence 0 01111222234455667777888999999999876
No 117
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.82 E-value=0.018 Score=54.65 Aligned_cols=38 Identities=26% Similarity=0.432 Sum_probs=27.9
Q ss_pred ceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHH
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISS 204 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~e 204 (515)
+++|.|++|+|||++| ..++...+. .++|++.|...++
T Consensus 3 ~ili~G~~~sGKS~~a-~~l~~~~~~--~~~~iat~~~~~~ 40 (170)
T PRK05800 3 LILVTGGARSGKSRFA-ERLAAQSGL--QVLYIATAQPFDD 40 (170)
T ss_pred EEEEECCCCccHHHHH-HHHHHHcCC--CcEeCcCCCCChH
Confidence 6899999999999997 444433333 3689999986544
No 118
>PRK08181 transposase; Validated
Probab=95.67 E-value=0.027 Score=57.34 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=31.4
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHhc-CCCeEEEEEEecCChHHHHHHHHHHh
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQK-NKNVTCIYVAIGQKISSIKKTANLLE 213 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~~-~~~~~~V~~~iGer~~ev~~~~~~l~ 213 (515)
.+|+.+.+.|++|||||+|+ ..|.++. ..+..++|.- +.++++.+.
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa-~Aia~~a~~~g~~v~f~~-------~~~L~~~l~ 150 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLA-AAIGLALIENGWRVLFTR-------TTDLVQKLQ 150 (269)
T ss_pred hcCceEEEEecCCCcHHHHH-HHHHHHHHHcCCceeeee-------HHHHHHHHH
Confidence 47889999999999999996 5555532 2343445553 355666664
No 119
>PRK09183 transposase/IS protein; Provisional
Probab=95.60 E-value=0.024 Score=57.24 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=24.6
Q ss_pred ccccccccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 153 IDSIVPIGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 153 ID~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
++.+.-+.+|+.++|+|++|+|||+|+ ..|.+
T Consensus 93 L~~~~~i~~~~~v~l~Gp~GtGKThLa-~al~~ 124 (259)
T PRK09183 93 LRSLSFIERNENIVLLGPSGVGKTHLA-IALGY 124 (259)
T ss_pred HhcCCchhcCCeEEEEeCCCCCHHHHH-HHHHH
Confidence 333333888999999999999999996 45544
No 120
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.56 E-value=0.043 Score=58.03 Aligned_cols=118 Identities=17% Similarity=0.208 Sum_probs=62.6
Q ss_pred CCCccccCCCccccccccc-cccccccccCCcceeeecCCCCCccHHHHHHHHHhc---CCCeEEEEEEecCChHHHHHH
Q psy2894 133 APGVISRQSVSEPLQTGIK-AIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQK---NKNVTCIYVAIGQKISSIKKT 208 (515)
Q Consensus 133 ~p~~~~R~~~~epl~TGik-~ID~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~---~~~~~~V~~~iGer~~ev~~~ 208 (515)
|+.+..|..--+-+.+-++ +++ =+++..+.|.|++|+|||+++ ..+.++. ..++.++|+-+-+... ...+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~----~~~~~~~lI~G~~GtGKT~l~-~~v~~~l~~~~~~~~~v~in~~~~~~-~~~~ 102 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALR----GSRPLNVLIYGPPGTGKTTTV-KKVFEELEEIAVKVVYVYINCQIDRT-RYAI 102 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhC----CCCCCeEEEECCCCCCHHHHH-HHHHHHHHHhcCCcEEEEEECCcCCC-HHHH
Confidence 3445555544444444332 122 245677999999999999994 6666542 2356778887765443 2333
Q ss_pred HHHHhhc-CCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHH
Q psy2894 209 ANLLEKY-GAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQA 267 (515)
Q Consensus 209 ~~~l~~~-~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a 267 (515)
+..+.+. +.-+ .+....+.... --.+.+++...++.++|++|++-.+.
T Consensus 103 ~~~i~~~l~~~~------~~~~~~~~~~~-----~~~~~~~l~~~~~~~viviDE~d~l~ 151 (394)
T PRK00411 103 FSEIARQLFGHP------PPSSGLSFDEL-----FDKIAEYLDERDRVLIVALDDINYLF 151 (394)
T ss_pred HHHHHHHhcCCC------CCCCCCCHHHH-----HHHHHHHHHhcCCEEEEEECCHhHhh
Confidence 3333211 1000 00000001111 11233455566888999999998765
No 121
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.028 Score=60.04 Aligned_cols=104 Identities=20% Similarity=0.321 Sum_probs=68.4
Q ss_pred ccccccccccccc--cccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEE
Q psy2894 145 PLQTGIKAIDSIV--PIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTI 222 (515)
Q Consensus 145 pl~TGik~ID~l~--pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~ 222 (515)
.+.||+.-.|-.+ =+.+|+=++|=|+||.|||||+|+...+.+... .|.||.==|.... +.-....-|.-...+
T Consensus 74 Ri~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Q---iklRA~RL~~~~~~l 149 (456)
T COG1066 74 RISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQ---IKLRADRLGLPTNNL 149 (456)
T ss_pred cccCChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHH---HHHHHHHhCCCccce
Confidence 5789999999887 568999999999999999999988877766555 7889874444433 333333334333334
Q ss_pred EEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhH
Q psy2894 223 IVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSK 265 (515)
Q Consensus 223 vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr 265 (515)
.+.+-.+..-.. .. .++-+--++|+||+--
T Consensus 150 ~l~aEt~~e~I~------------~~-l~~~~p~lvVIDSIQT 179 (456)
T COG1066 150 YLLAETNLEDII------------AE-LEQEKPDLVVIDSIQT 179 (456)
T ss_pred EEehhcCHHHHH------------HH-HHhcCCCEEEEeccce
Confidence 333332321111 11 2446778899999754
No 122
>PRK04296 thymidine kinase; Provisional
Probab=95.48 E-value=0.051 Score=52.20 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=27.6
Q ss_pred CcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEE
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYV 196 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~ 196 (515)
|.=.+|.|++|+||||+++..+.+....+-.|+++
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 55678999999999999998888876556555555
No 123
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.48 E-value=0.09 Score=52.04 Aligned_cols=51 Identities=16% Similarity=0.283 Sum_probs=34.8
Q ss_pred CcceeeecCCCCCccHHHHHHHHHhc------------CCCeEEEEEEecCChHHHHHHHHHH
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQK------------NKNVTCIYVAIGQKISSIKKTANLL 212 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~~------------~~~~~~V~~~iGer~~ev~~~~~~l 212 (515)
|.=.+|+|++|+|||+|+++..++-. .....++|+..-+...++.+=+..+
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i 63 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAI 63 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHH
Confidence 45568999999999999988866521 1345677877665566665544444
No 124
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=95.47 E-value=0.059 Score=58.23 Aligned_cols=185 Identities=15% Similarity=0.191 Sum_probs=94.1
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHH
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISA 239 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~ 239 (515)
-++..+.++||+|||||+|+.+ +..+. .|+ .| +.-.+++++..+..
T Consensus 207 e~~~Nli~lGp~GTGKThla~~-l~~~~----a~~---sG-~f~T~a~Lf~~L~~------------------------- 252 (449)
T TIGR02688 207 EPNYNLIELGPKGTGKSYIYNN-LSPYV----ILI---SG-GTITVAKLFYNIST------------------------- 252 (449)
T ss_pred hcCCcEEEECCCCCCHHHHHHH-HhHHH----HHH---cC-CcCcHHHHHHHHHH-------------------------
Confidence 4899999999999999999743 32220 010 12 45567777777652
Q ss_pred hhhhhhHHHHHHcCCcEEEEEechhHHHHH-HHHH-HHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcc
Q psy2894 240 YSGCTIGEYFRDHGKDALVVYDDLSKQAVA-YRQI-SLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKV 317 (515)
Q Consensus 240 ~~a~~iAE~frd~G~~Vlli~Dsltr~a~A-~rei-sl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~ 317 (515)
..+..-++-=||++|++..+.-- ..|+ +.+ -.|+-+.-++|.... .
T Consensus 253 -------~~lg~v~~~DlLI~DEvgylp~~~~~~~v~im-------------K~yMesg~fsRG~~~-~----------- 300 (449)
T TIGR02688 253 -------RQIGLVGRWDVVAFDEVATLKFAKPKELIGIL-------------KNYMESGSFTRGDET-K----------- 300 (449)
T ss_pred -------HHHhhhccCCEEEEEcCCCCcCCchHHHHHHH-------------HHHHHhCceecccee-e-----------
Confidence 11112255567889988763211 1111 111 124444444442221 0
Q ss_pred cCCCCceeeeeEEe------ecCCCCCCcccccccccCCeEEEecchhhcCCC--cC-----ccccCCCccccccccchH
Q psy2894 318 TGKTGSLTAIPIIE------TQAGDISAFVPTNVISITDGQIFLDSSLFNSGI--RP-----AINAGISVSRVGGAAQIK 384 (515)
Q Consensus 318 ~g~~GSiT~l~~v~------~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~--~P-----AIdv~~S~SRv~~~~~~~ 384 (515)
. ...|+--++=+. .+..++-+|.|...+ |+.+.+|=| -| -|.+-.=.+.+| ....
T Consensus 301 ~-a~as~vfvGNi~~~v~~~~~~~~Lf~~lP~~~~---------DsAflDRiH~yiPGWeipk~~~e~~t~~yG--l~~D 368 (449)
T TIGR02688 301 S-SDASFVFLGNVPLTSEHMVKNSDLFSPLPEFMR---------DSAFLDRIHGYLPGWEIPKIRKEMFSNGYG--FVVD 368 (449)
T ss_pred e-eeeEEEEEcccCCcchhhcCcccccccCChhhh---------hhHHHHhhhccCCCCcCccCCHHHcccCCc--chHH
Confidence 1 133333332221 224566667776432 444554434 33 333322223333 2334
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhccCCCHHHHHHHHh
Q psy2894 385 FIKKLSSNIRTDLAQYRELAAFSQFSSDLDLVTRKQLDR 423 (515)
Q Consensus 385 ~~~~~a~~lr~~la~y~el~~~~~~g~~ld~~~~~~l~~ 423 (515)
.+-++-..+|+ .+-...++....+|..++..+..++.+
T Consensus 369 ylsE~l~~lR~-~~~~~~~~~~~~l~~~~~~RD~~aV~k 406 (449)
T TIGR02688 369 YFAEALRELRE-REYADIVDRHFSLSPNLNTRDVIAVKK 406 (449)
T ss_pred HHHHHHHHHHh-hHHHHhhhhheecCCCcchhhHHHHHH
Confidence 44455556665 344455677778888888777665543
No 125
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.31 E-value=0.063 Score=46.85 Aligned_cols=32 Identities=19% Similarity=0.218 Sum_probs=23.4
Q ss_pred eeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEec
Q psy2894 165 ELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIG 199 (515)
Q Consensus 165 ~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iG 199 (515)
++|.|++|+|||++ ...++++-+ ..++.+-.+
T Consensus 1 ill~G~~G~GKT~l-~~~la~~l~--~~~~~i~~~ 32 (132)
T PF00004_consen 1 ILLHGPPGTGKTTL-ARALAQYLG--FPFIEIDGS 32 (132)
T ss_dssp EEEESSTTSSHHHH-HHHHHHHTT--SEEEEEETT
T ss_pred CEEECcCCCCeeHH-HHHHHhhcc--ccccccccc
Confidence 57999999999999 488887754 333445444
No 126
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.27 E-value=0.044 Score=55.94 Aligned_cols=30 Identities=30% Similarity=0.414 Sum_probs=23.6
Q ss_pred CcceeeecCCCCCccHHHHHHHHHhcCCCeE
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQKNKNVT 192 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~ 192 (515)
.+.+.+.|++|+|||+|+ ..++++.+.++.
T Consensus 30 ~~~~ll~Gp~G~GKT~la-~~ia~~~~~~~~ 59 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLA-HIIANEMGVNLK 59 (305)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHhCCCEE
Confidence 456899999999999995 777776655543
No 127
>PRK14974 cell division protein FtsY; Provisional
Probab=95.18 E-value=0.14 Score=53.84 Aligned_cols=104 Identities=21% Similarity=0.295 Sum_probs=54.8
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHh-cCCCeEEEEEEecC-ChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHH
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQ-KNKNVTCIYVAIGQ-KISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFI 237 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~-~~~~~~~V~~~iGe-r~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~ 237 (515)
+++..++++|++|+||||++ ..++.. ...+..++++.+.- |...+.++.......|+ -++-.....+|+..
T Consensus 138 ~~~~vi~~~G~~GvGKTTti-akLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv---~v~~~~~g~dp~~v--- 210 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTI-AKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGV---KVIKHKYGADPAAV--- 210 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHH-HHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCC---ceecccCCCCHHHH---
Confidence 56789999999999999984 555443 23344555666653 33333333222332231 11112222232211
Q ss_pred HHhhhhhhHHHHHHcCCcEEEEEechhHH---HHHHHHHHH
Q psy2894 238 SAYSGCTIGEYFRDHGKDALVVYDDLSKQ---AVAYRQISL 275 (515)
Q Consensus 238 a~~~a~~iAE~frd~G~~Vlli~Dsltr~---a~A~reisl 275 (515)
.+ ...++...+|+| +|++|.--|. +.-..|+..
T Consensus 211 -~~---~ai~~~~~~~~D-vVLIDTaGr~~~~~~lm~eL~~ 246 (336)
T PRK14974 211 -AY---DAIEHAKARGID-VVLIDTAGRMHTDANLMDELKK 246 (336)
T ss_pred -HH---HHHHHHHhCCCC-EEEEECCCccCCcHHHHHHHHH
Confidence 12 233445567888 8888986664 444444433
No 128
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.16 E-value=0.024 Score=55.71 Aligned_cols=54 Identities=17% Similarity=0.321 Sum_probs=42.4
Q ss_pred ccccc-ccCCcceeeecCCCCCccHHHHHHHHHhcCC-CeEEEEEEecCChHHHHH
Q psy2894 154 DSIVP-IGKGQRELIIGDRQTGKSSIAIDIIINQKNK-NVTCIYVAIGQKISSIKK 207 (515)
Q Consensus 154 D~l~p-igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~-~~~~V~~~iGer~~ev~~ 207 (515)
|.++. +-+|+-..|.|+||+|||+++++.+.+.... +-.++|+..-+..+++.+
T Consensus 4 D~~~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~ 59 (242)
T cd00984 4 DNLTGGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQ 59 (242)
T ss_pred hhhhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHH
Confidence 44433 6689999999999999999998877776443 666789998888887665
No 129
>PRK06526 transposase; Provisional
Probab=95.12 E-value=0.039 Score=55.73 Aligned_cols=45 Identities=13% Similarity=0.147 Sum_probs=29.5
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHh-cCCCeEEEEEEecCChHHHHHHHHHHh
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQ-KNKNVTCIYVAIGQKISSIKKTANLLE 213 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~-~~~~~~~V~~~iGer~~ev~~~~~~l~ 213 (515)
+++.+.|.|++|||||+|+ ..|.+. ...+..+.| -...++++.+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa-~al~~~a~~~g~~v~f-------~t~~~l~~~l~ 142 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLA-IGLGIRACQAGHRVLF-------ATAAQWVARLA 142 (254)
T ss_pred cCceEEEEeCCCCchHHHH-HHHHHHHHHCCCchhh-------hhHHHHHHHHH
Confidence 6889999999999999997 444443 223333333 23456666664
No 130
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.04 E-value=0.17 Score=52.84 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=26.9
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHh-cCCCeEEEEEEec
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQ-KNKNVTCIYVAIG 199 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~-~~~~~~~V~~~iG 199 (515)
.+|+.++++|++|+||||++ ..++.. +..+-.+.++.+.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~-~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTI-GKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCCeEEEEECCCCCcHHHHH-HHHHHHHHhcCCeEEEEecC
Confidence 57999999999999999996 444432 3333344445555
No 131
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=94.99 E-value=0.045 Score=54.88 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=28.5
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHH---hcCCCeEEEEEEecCChHH
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIIN---QKNKNVTCIYVAIGQKISS 204 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~---~~~~~~~~V~~~iGer~~e 204 (515)
...+.++|.|.+|+|||+||....-+ +..-+. ++++-.+.....
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~-v~wv~~~~~~~~ 63 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDG-VIWVSLSKNPSL 63 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTE-EEEEEEES-SCC
T ss_pred CCeEEEEEEcCCcCCcceeeeeccccccccccccc-cccccccccccc
Confidence 45677899999999999998554433 223344 456666655443
No 132
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.86 E-value=0.027 Score=56.34 Aligned_cols=61 Identities=20% Similarity=0.407 Sum_probs=45.8
Q ss_pred cccccccccccc-cccCCcceeeecCCCCCccHHHHHHHHHhcCC-CeEEEEEEecCChHHHH
Q psy2894 146 LQTGIKAIDSIV-PIGKGQRELIIGDRQTGKSSIAIDIIINQKNK-NVTCIYVAIGQKISSIK 206 (515)
Q Consensus 146 l~TGik~ID~l~-pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~~-~~~~V~~~iGer~~ev~ 206 (515)
+.||++.+|-++ -+.+|+=..|-|.||+|||+++++...+.... +..++|.......+++.
T Consensus 2 i~TG~~~LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~ 64 (259)
T PF03796_consen 2 IPTGFPALDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELA 64 (259)
T ss_dssp B-SSTHHHHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHH
T ss_pred CCCChHHHHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHH
Confidence 469999999987 67888999999999999999998887775443 46677887776666654
No 133
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.80 E-value=0.018 Score=57.69 Aligned_cols=35 Identities=26% Similarity=0.575 Sum_probs=29.0
Q ss_pred ccccccc-ccccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 150 IKAIDSI-VPIGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 150 ik~ID~l-~pigrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
.++++.+ +.+.+|+.+.|+|++||||||| +..|+-
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTL-LriiAG 51 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTL-LRLIAG 51 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHH-HHHHhC
Confidence 4555444 4899999999999999999999 688875
No 134
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=94.70 E-value=0.6 Score=46.48 Aligned_cols=70 Identities=13% Similarity=0.126 Sum_probs=51.6
Q ss_pred hHHHHHHcCCcEEEEEechh----HHHHHHHHHHHhcCCCCCCCCCCCchh------hhhhHHHHHhhccchhhhhcccC
Q psy2894 245 IGEYFRDHGKDALVVYDDLS----KQAVAYRQISLLLKRPPGREAYPGDIF------YLHSRLLERSARVNIKYVENYTN 314 (515)
Q Consensus 245 iAE~frd~G~~Vlli~Dslt----r~a~A~reisl~l~~pp~~~gypg~vf------~~~~rl~ERag~~~~~~~~~~~~ 314 (515)
+-+++...|..+++++--+- .+.+.+.++-..++..|..--+|+.++ ..+..|+|..+-..+++++++.+
T Consensus 108 ~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~ 187 (237)
T cd04168 108 LWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLE 187 (237)
T ss_pred HHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhC
Confidence 34445567888888876554 468899999988988777766776332 23468899999888888988883
No 135
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.67 E-value=0.096 Score=54.71 Aligned_cols=95 Identities=20% Similarity=0.314 Sum_probs=51.5
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHhc---CC----CeEEEEEEecCChH---HHHHHHHHHhhcCCCCcEEEEEeCCC
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQK---NK----NVTCIYVAIGQKIS---SIKKTANLLEKYGAMPYTIIVAATAS 229 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~~---~~----~~~~V~~~iGer~~---ev~~~~~~l~~~~~~~~t~vv~~t~~ 229 (515)
++++.+.|.|++|+|||+++ ..+.++- .. .+..+|+-|-+-.. -..++.+.+...|. + .....
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~-~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~-~-----~~~~~ 110 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVT-KYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGE-E-----VPTTG 110 (365)
T ss_pred CCCCcEEEECCCCCCHHHHH-HHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCC-C-----CCCCC
Confidence 45578999999999999995 6565531 11 15667777754322 22333344421110 0 00001
Q ss_pred CCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHH
Q psy2894 230 DSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQA 267 (515)
Q Consensus 230 ~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a 267 (515)
.+....+ -.+-+++...++.++|++|++-.+.
T Consensus 111 ~~~~~~~------~~l~~~l~~~~~~~vlvIDE~d~L~ 142 (365)
T TIGR02928 111 LSTSEVF------RRLYKELNERGDSLIIVLDEIDYLV 142 (365)
T ss_pred CCHHHHH------HHHHHHHHhcCCeEEEEECchhhhc
Confidence 1111111 1123344456889999999998875
No 136
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.65 E-value=0.11 Score=55.81 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=24.1
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHhcCCCeE
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQKNKNVT 192 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~ 192 (515)
+...++|.|++|||||++| ..|++..+.++.
T Consensus 35 ~~~~ilL~GppGtGKTtLA-~~ia~~~~~~~~ 65 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLA-RIIAGATDAPFE 65 (413)
T ss_pred CCceEEEECCCCCCHHHHH-HHHHHHhCCCEE
Confidence 3447899999999999995 777777666643
No 137
>PRK12377 putative replication protein; Provisional
Probab=94.53 E-value=0.089 Score=53.02 Aligned_cols=35 Identities=29% Similarity=0.288 Sum_probs=23.4
Q ss_pred CcceeeecCCCCCccHHHHHHHHHhc-CCCeEEEEEE
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQK-NKNVTCIYVA 197 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~~-~~~~~~V~~~ 197 (515)
.+-+.|.|++|||||+|| ..|++.- ..+..|+|+-
T Consensus 101 ~~~l~l~G~~GtGKThLa-~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLA-AAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHHcCCCeEEEE
Confidence 356889999999999996 6666642 2333344443
No 138
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=94.52 E-value=0.094 Score=54.49 Aligned_cols=29 Identities=31% Similarity=0.473 Sum_probs=22.8
Q ss_pred CcceeeecCCCCCccHHHHHHHHHhcCCCe
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQKNKNV 191 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~~~~~~ 191 (515)
...++|.|++|+|||++| ..+++..+.++
T Consensus 51 ~~~~ll~GppG~GKT~la-~~ia~~l~~~~ 79 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLA-NIIANEMGVNI 79 (328)
T ss_pred CCcEEEECCCCccHHHHH-HHHHHHhCCCe
Confidence 346899999999999995 67777665543
No 139
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=94.48 E-value=0.049 Score=58.80 Aligned_cols=63 Identities=13% Similarity=0.286 Sum_probs=50.1
Q ss_pred cccccccccccccc-cccCCcceeeecCCCCCccHHHHHHHHHhc-CCCeEEEEEEecCChHHHH
Q psy2894 144 EPLQTGIKAIDSIV-PIGKGQRELIIGDRQTGKSSIAIDIIINQK-NKNVTCIYVAIGQKISSIK 206 (515)
Q Consensus 144 epl~TGik~ID~l~-pigrGqr~~I~g~~g~GKt~l~~~~i~~~~-~~~~~~V~~~iGer~~ev~ 206 (515)
..+.||+..+|-++ -+-+|+=+.|-|.||+|||+++++.+.+.. ..+-.++|...-+...++.
T Consensus 176 ~gi~tG~~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~ 240 (434)
T TIGR00665 176 TGVPTGFTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLA 240 (434)
T ss_pred CcccCCchhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHH
Confidence 35889999999997 478999999999999999999988777643 2344467777777777664
No 140
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=94.47 E-value=0.033 Score=57.03 Aligned_cols=134 Identities=22% Similarity=0.242 Sum_probs=73.8
Q ss_pred ceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGC 243 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~ 243 (515)
-++++||||.|||||| ..|+|.-+.+.++.=+-.=||+.+.+-++..|+
T Consensus 54 HvLl~GPPGlGKTTLA-~IIA~Emgvn~k~tsGp~leK~gDlaaiLt~Le------------------------------ 102 (332)
T COG2255 54 HVLLFGPPGLGKTTLA-HIIANELGVNLKITSGPALEKPGDLAAILTNLE------------------------------ 102 (332)
T ss_pred eEEeeCCCCCcHHHHH-HHHHHHhcCCeEecccccccChhhHHHHHhcCC------------------------------
Confidence 4789999999999996 677776677765332222344444443333332
Q ss_pred hhHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhH-HHHHhhccchhhhhcccCCcccCCCC
Q psy2894 244 TIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSR-LLERSARVNIKYVENYTNGKVTGKTG 322 (515)
Q Consensus 244 ~iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~r-l~ERag~~~~~~~~~~~~~~~~g~~G 322 (515)
-.|| +++|.+.|...+-.|+- =|+-|-|-=|+- ..+ ---|+-++ .=-
T Consensus 103 ---------~~DV-LFIDEIHrl~~~vEE~L-----YpaMEDf~lDI~--IG~gp~Arsv~l---------------dLp 150 (332)
T COG2255 103 ---------EGDV-LFIDEIHRLSPAVEEVL-----YPAMEDFRLDII--IGKGPAARSIRL---------------DLP 150 (332)
T ss_pred ---------cCCe-EEEehhhhcChhHHHHh-----hhhhhheeEEEE--EccCCccceEec---------------cCC
Confidence 2244 45799999988888873 122222221110 000 00001111 011
Q ss_pred ceeeeeEEeecCCCCCCcccccccccCCeEEEecchhhc
Q psy2894 323 SLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFN 361 (515)
Q Consensus 323 SiT~l~~v~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~ 361 (515)
--|.++ .+|..|-++.|.-|.+.-+.--..|-..+|..
T Consensus 151 pFTLIG-ATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~ 188 (332)
T COG2255 151 PFTLIG-ATTRAGMLTNPLRDRFGIIQRLEFYTVEELEE 188 (332)
T ss_pred CeeEee-eccccccccchhHHhcCCeeeeecCCHHHHHH
Confidence 234443 46778888999888776666555565666653
No 141
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.42 E-value=0.099 Score=52.54 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=21.5
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
+...+..+++.|+||||||++| ..+++
T Consensus 38 ~~~~~~~vll~GppGtGKTtlA-~~ia~ 64 (261)
T TIGR02881 38 TSKQVLHMIFKGNPGTGKTTVA-RILGK 64 (261)
T ss_pred CCCCcceEEEEcCCCCCHHHHH-HHHHH
Confidence 4466678899999999999996 55554
No 142
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.35 E-value=0.42 Score=48.75 Aligned_cols=50 Identities=16% Similarity=0.198 Sum_probs=31.6
Q ss_pred ccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEec-CChHHHHHH
Q psy2894 159 IGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIG-QKISSIKKT 208 (515)
Q Consensus 159 igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iG-er~~ev~~~ 208 (515)
..+++.++++|++|+||||++..........+..+.++.+. .|...+.++
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql 119 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQL 119 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHH
Confidence 46678999999999999999744433333334445556666 344444333
No 143
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=94.32 E-value=0.14 Score=54.99 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=23.6
Q ss_pred CcceeeecCCCCCccHHHHHHHHHhcCCCe
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQKNKNV 191 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~~~~~~ 191 (515)
+..+++.|++|||||+++ ..+++..+..+
T Consensus 179 pkgvLL~GppGTGKT~LA-kalA~~l~~~f 207 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLA-KAVAHHTTATF 207 (398)
T ss_pred CceEEEECCCCCCHHHHH-HHHHHhcCCCE
Confidence 445999999999999995 88888766554
No 144
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=94.30 E-value=0.13 Score=47.78 Aligned_cols=45 Identities=16% Similarity=0.326 Sum_probs=22.9
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHh-cCCCeEEEEEEecCC
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQ-KNKNVTCIYVAIGQK 201 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~-~~~~~~~V~~~iGer 201 (515)
...-+.+.-+.|.|++|+|||+|+ ..+..+ ...+..++++-+-..
T Consensus 18 ~~~~~~~~~~ll~G~~G~GKT~ll-~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 18 AAQSGSPRNLLLTGESGSGKTSLL-RALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp GTSS-----EEE-B-TTSSHHHHH-HHHHHHHHHHT--EEEEEEETT
T ss_pred HHHcCCCcEEEEECCCCCCHHHHH-HHHHHHHHhcCCEEEEEEEecc
Confidence 466778889999999999999995 544432 222222455555544
No 145
>PRK07261 topology modulation protein; Provisional
Probab=94.29 E-value=0.087 Score=49.72 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=19.3
Q ss_pred cceeeecCCCCCccHHHHHHHHHh
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+|++|+|.+|+|||||+ ..+...
T Consensus 1 ~ri~i~G~~GsGKSTla-~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLA-RKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHH-HHHHHH
Confidence 58999999999999996 656554
No 146
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.26 E-value=0.16 Score=50.04 Aligned_cols=37 Identities=16% Similarity=0.351 Sum_probs=27.4
Q ss_pred CcceeeecCCCCCccHHHHHHHHHh---cCCCeEEEEEEec
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQ---KNKNVTCIYVAIG 199 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~---~~~~~~~V~~~iG 199 (515)
...+-|.|++|+|||+| +..|.|. ...+..|+|+-.-
T Consensus 34 ~~~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~~v~y~~~~ 73 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHL-LQAIANEAQKQHPGKRVVYLSAE 73 (219)
T ss_dssp SSEEEEEESTTSSHHHH-HHHHHHHHHHHCTTS-EEEEEHH
T ss_pred CCceEEECCCCCCHHHH-HHHHHHHHHhccccccceeecHH
Confidence 34689999999999999 6888774 3456777777543
No 147
>PRK08727 hypothetical protein; Validated
Probab=94.18 E-value=0.18 Score=49.90 Aligned_cols=39 Identities=15% Similarity=0.241 Sum_probs=26.6
Q ss_pred cceeeecCCCCCccHHHHHHHHHh-cCCCeEEEEEEecCCh
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQ-KNKNVTCIYVAIGQKI 202 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~-~~~~~~~V~~~iGer~ 202 (515)
+-+.|.|++|+|||+|+ ..+.++ ...+..++|+...+..
T Consensus 42 ~~l~l~G~~G~GKThL~-~a~~~~~~~~~~~~~y~~~~~~~ 81 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLA-LALCAAAEQAGRSSAYLPLQAAA 81 (233)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHcCCcEEEEeHHHhh
Confidence 34899999999999995 666554 2334455677654433
No 148
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.12 E-value=0.033 Score=53.20 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=28.6
Q ss_pred cccccccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 152 AIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 152 ~ID~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+++..+.+.+|+.++|+|++|+||||| +.+|...
T Consensus 15 ~l~~~~~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl 48 (177)
T cd03222 15 LLVELGVVKEGEVIGIVGPNGTGKTTA-VKILAGQ 48 (177)
T ss_pred EEccCcEECCCCEEEEECCCCChHHHH-HHHHHcC
Confidence 344456899999999999999999999 6888764
No 149
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.08 E-value=0.45 Score=47.32 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=19.9
Q ss_pred cceeeecCCCCCccHHHHHHHHHhcC
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQKN 188 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~~~ 188 (515)
+-++|.|++|+||||++ ..+.+.-.
T Consensus 44 ~~~~l~G~~G~GKTtl~-~~l~~~l~ 68 (269)
T TIGR03015 44 GFILITGEVGAGKTTLI-RNLLKRLD 68 (269)
T ss_pred CEEEEEcCCCCCHHHHH-HHHHHhcC
Confidence 36889999999999995 66776543
No 150
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.05 E-value=0.24 Score=44.19 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=18.1
Q ss_pred eeeecCCCCCccHHHHHHHHHhcC
Q psy2894 165 ELIIGDRQTGKSSIAIDIIINQKN 188 (515)
Q Consensus 165 ~~I~g~~g~GKt~l~~~~i~~~~~ 188 (515)
+.+.|++|+||||++ ..++....
T Consensus 2 ii~~G~pgsGKSt~a-~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA-KRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHH-HHHHHHST
T ss_pred EEEECCCCCCHHHHH-HHHHHHCC
Confidence 578999999999995 77765443
No 151
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.05 E-value=0.065 Score=57.67 Aligned_cols=62 Identities=19% Similarity=0.355 Sum_probs=47.8
Q ss_pred cccccccccccccc-cccCCcceeeecCCCCCccHHHHHHHHHhc-CCCeEEEEEEecCChHHH
Q psy2894 144 EPLQTGIKAIDSIV-PIGKGQRELIIGDRQTGKSSIAIDIIINQK-NKNVTCIYVAIGQKISSI 205 (515)
Q Consensus 144 epl~TGik~ID~l~-pigrGqr~~I~g~~g~GKt~l~~~~i~~~~-~~~~~~V~~~iGer~~ev 205 (515)
.-+.||+..+|-++ -+-+|+=+.|-|.||+|||+++++...+.. ..+..+.|........++
T Consensus 175 ~gi~tG~~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l 238 (421)
T TIGR03600 175 TGLSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQL 238 (421)
T ss_pred cceeCCChhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHH
Confidence 34799999999998 588999999999999999999987776654 334445666666555554
No 152
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.03 E-value=0.033 Score=54.05 Aligned_cols=29 Identities=31% Similarity=0.606 Sum_probs=26.1
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 26 l~i~~G~~~~i~G~nGsGKSTL-l~~i~G~ 54 (221)
T TIGR02211 26 LSIGKGEIVAIVGSSGSGKSTL-LHLLGGL 54 (221)
T ss_pred EEEcCCcEEEEECCCCCCHHHH-HHHHhCC
Confidence 5788999999999999999999 6888764
No 153
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.02 E-value=0.035 Score=52.41 Aligned_cols=29 Identities=24% Similarity=0.438 Sum_probs=26.0
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTL-l~~l~G~ 49 (178)
T cd03229 21 LNIEAGEIVALLGPSGSGKSTL-LRCIAGL 49 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 5788999999999999999999 6888754
No 154
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.98 E-value=0.047 Score=54.65 Aligned_cols=34 Identities=26% Similarity=0.593 Sum_probs=26.9
Q ss_pred cccccc-ccccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 151 KAIDSI-VPIGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 151 k~ID~l-~pigrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
++++.+ +.|.+|++.||+|++|+|||||+ ..++-
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~-r~l~G 55 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLA-RLLAG 55 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHH-HHHhc
Confidence 344443 58999999999999999999995 55554
No 155
>PRK05748 replicative DNA helicase; Provisional
Probab=93.93 E-value=0.076 Score=57.73 Aligned_cols=63 Identities=14% Similarity=0.265 Sum_probs=49.3
Q ss_pred cccccccccccccc-cccCCcceeeecCCCCCccHHHHHHHHHhc-CCCeEEEEEEecCChHHHH
Q psy2894 144 EPLQTGIKAIDSIV-PIGKGQRELIIGDRQTGKSSIAIDIIINQK-NKNVTCIYVAIGQKISSIK 206 (515)
Q Consensus 144 epl~TGik~ID~l~-pigrGqr~~I~g~~g~GKt~l~~~~i~~~~-~~~~~~V~~~iGer~~ev~ 206 (515)
.-+.||+..+|.++ -+-+|+=+.|-|.||+|||+++++.+.+.. ..+-.|+|...-+...++.
T Consensus 184 ~gi~TG~~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~ 248 (448)
T PRK05748 184 TGIPTGFTDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLV 248 (448)
T ss_pred CCccCChHHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHH
Confidence 45899999999997 477899999999999999999988776643 3344456777777666553
No 156
>PRK10867 signal recognition particle protein; Provisional
Probab=93.92 E-value=0.3 Score=53.09 Aligned_cols=94 Identities=16% Similarity=0.171 Sum_probs=49.9
Q ss_pred CcceeeecCCCCCccHHHHHHHHHhcCC-CeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEe-CCCCCHHhhHHHH
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQKNK-NVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAA-TASDSASMQFISA 239 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~~~~-~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~-t~~~~~~~r~~a~ 239 (515)
-..+.+.|++|+||||++.......+.. +..+.++.+.-......+-++.+.+.-.+ -++.. ...+|+....
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv---~v~~~~~~~dp~~i~~--- 173 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGV---PVFPSGDGQDPVDIAK--- 173 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCC---eEEecCCCCCHHHHHH---
Confidence 4568899999999999874433332333 44566778886655554444443322111 13332 2223322221
Q ss_pred hhhhhhHHHHHHcCCcEEEEEechhHH
Q psy2894 240 YSGCTIGEYFRDHGKDALVVYDDLSKQ 266 (515)
Q Consensus 240 ~~a~~iAE~frd~G~~Vlli~Dsltr~ 266 (515)
...++++..++|+ +|+|.--|+
T Consensus 174 ----~a~~~a~~~~~Dv-VIIDTaGrl 195 (433)
T PRK10867 174 ----AALEEAKENGYDV-VIVDTAGRL 195 (433)
T ss_pred ----HHHHHHHhcCCCE-EEEeCCCCc
Confidence 1224455566665 556776654
No 157
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.92 E-value=0.36 Score=46.70 Aligned_cols=87 Identities=16% Similarity=0.218 Sum_probs=55.2
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEec--CChH----------HHHHHHHHHhhcCCCCcEEEEEeCC
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIG--QKIS----------SIKKTANLLEKYGAMPYTIIVAATA 228 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iG--er~~----------ev~~~~~~l~~~~~~~~t~vv~~t~ 228 (515)
+|.=+.|.||+|+||||| +.++.... ++..-+-..- -|.. ...+|.+-+.....+++..++-+-
T Consensus 3 ~G~l~vlsgPSG~GKsTl-~k~L~~~~--~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gny- 78 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTL-VKALLEDD--KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNY- 78 (191)
T ss_pred CceEEEEECCCCCCHHHH-HHHHHhhc--CeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCc-
Confidence 788889999999999999 57777654 3221111111 1111 245777777777888888877422
Q ss_pred CCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEe
Q psy2894 229 SDSASMQFISAYSGCTIGEYFRDHGKDALVVYD 261 (515)
Q Consensus 229 ~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~D 261 (515)
|-.+ ..-.|--.++|+||++-+|
T Consensus 79 -------YGT~---~~~ve~~~~~G~~vildId 101 (191)
T COG0194 79 -------YGTS---REPVEQALAEGKDVILDID 101 (191)
T ss_pred -------ccCc---HHHHHHHHhcCCeEEEEEe
Confidence 2111 1223444568999999998
No 158
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.92 E-value=0.051 Score=50.30 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=21.2
Q ss_pred ceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHH
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSI 205 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev 205 (515)
|+.|.|+++|||||| +..+.++ ++.|| .|-++++
T Consensus 1 rI~i~G~~stGKTTL-~~~L~~~---g~~~v----~E~ar~~ 34 (163)
T PF13521_consen 1 RIVITGGPSTGKTTL-IEALAAR---GYPVV----PEYAREI 34 (163)
T ss_dssp -EEEE--TTSHHHHH-HHHHHHH---T-EEE------TTHHH
T ss_pred CEEEECCCCCCHHHH-HHHHHHc---CCeEE----eecHHHH
Confidence 789999999999999 4777766 55432 6666653
No 159
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=93.90 E-value=0.036 Score=53.13 Aligned_cols=29 Identities=38% Similarity=0.559 Sum_probs=25.7
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|++.+|+|++|+||||| +.+|+..
T Consensus 19 ~~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~ 47 (206)
T TIGR03608 19 LTIEKGKMYAIIGESGSGKSTL-LNIIGLL 47 (206)
T ss_pred EEEeCCcEEEEECCCCCCHHHH-HHHHhcC
Confidence 4778999999999999999999 6888764
No 160
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.90 E-value=0.19 Score=54.42 Aligned_cols=41 Identities=7% Similarity=0.139 Sum_probs=26.3
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHh-cCCCeEEEEEEecC
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQ-KNKNVTCIYVAIGQ 200 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~-~~~~~~~V~~~iGe 200 (515)
.++..++++|++|+||||++....... ...+..+.++.+..
T Consensus 221 ~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 221 NQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 356679999999999999974444333 23343444455554
No 161
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=93.89 E-value=0.037 Score=54.02 Aligned_cols=30 Identities=27% Similarity=0.483 Sum_probs=26.4
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.+.+|+..+|+|++|+||||| +.+|+...
T Consensus 21 l~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~ 50 (227)
T cd03260 21 LDIPKGEITALIGPSGCGKSTL-LRLLNRLN 50 (227)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHHhhc
Confidence 5788999999999999999999 68887643
No 162
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.85 E-value=0.038 Score=53.26 Aligned_cols=30 Identities=23% Similarity=0.411 Sum_probs=26.4
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
=+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTL-l~~l~G~ 49 (210)
T cd03269 20 SFSVEKGEIFGLLGPNGAGKTTT-IRMILGI 49 (210)
T ss_pred EEEEcCCcEEEEECCCCCCHHHH-HHHHhCC
Confidence 35788999999999999999999 6888764
No 163
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=93.82 E-value=0.039 Score=54.41 Aligned_cols=29 Identities=31% Similarity=0.433 Sum_probs=26.0
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl 51 (243)
T TIGR02315 23 LNINPGEFVAIIGPSGAGKSTL-LRCINRL 51 (243)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 5788999999999999999999 6888764
No 164
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.78 E-value=0.041 Score=52.48 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=24.5
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHH
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIII 184 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~ 184 (515)
+.+.+|++++|.|++|+||||| +.+++
T Consensus 16 l~i~~G~~~~l~G~nG~GKSTL-l~~il 42 (176)
T cd03238 16 VSIPLNVLVVVTGVSGSGKSTL-VNEGL 42 (176)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHh
Confidence 5889999999999999999999 67775
No 165
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.78 E-value=0.059 Score=51.18 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=25.9
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|...
T Consensus 13 l~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~ 41 (190)
T TIGR01166 13 FAAERGEVLALLGANGAGKSTL-LLHLNGL 41 (190)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 5788999999999999999999 6888764
No 166
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=93.78 E-value=0.27 Score=50.60 Aligned_cols=41 Identities=20% Similarity=0.317 Sum_probs=29.4
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHH-hcCCCeEEEEEEec
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIIN-QKNKNVTCIYVAIG 199 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~-~~~~~~~~V~~~iG 199 (515)
..+++..++|.|++|+||||++ ..+.. ....+..+.++.+.
T Consensus 30 ~~~~~~~i~i~G~~G~GKttl~-~~l~~~~~~~~~~v~~i~~D 71 (300)
T TIGR00750 30 YTGNAHRVGITGTPGAGKSTLL-EALGMELRRRGLKVAVIAVD 71 (300)
T ss_pred ccCCceEEEEECCCCCCHHHHH-HHHHHHHHHCCCeEEEEecC
Confidence 5678999999999999999995 55443 23345455555555
No 167
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=93.77 E-value=0.04 Score=53.16 Aligned_cols=29 Identities=24% Similarity=0.599 Sum_probs=26.1
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 22 l~i~~G~~~~i~G~nGsGKSTL-l~~l~G~ 50 (214)
T cd03292 22 ISISAGEFVFLVGPSGAGKSTL-LKLIYKE 50 (214)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhcC
Confidence 5788999999999999999999 6888765
No 168
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.74 E-value=0.041 Score=53.72 Aligned_cols=30 Identities=23% Similarity=0.509 Sum_probs=26.9
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.+.+||..+|+|++|+||||| +.+|+...
T Consensus 24 l~i~~G~~~~i~G~nGsGKSTL-l~~l~G~~ 53 (229)
T cd03254 24 FSIKPGETVAIVGPTGAGKTTL-INLLMRFY 53 (229)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhcCc
Confidence 5889999999999999999999 68888753
No 169
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=93.74 E-value=0.14 Score=54.48 Aligned_cols=73 Identities=21% Similarity=0.311 Sum_probs=44.0
Q ss_pred eeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhh
Q psy2894 165 ELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCT 244 (515)
Q Consensus 165 ~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~ 244 (515)
+||.||+|||||.++ ..|++..+..+ |.+..|| |. ..-.-+ +....+..| .
T Consensus 151 llL~GPPGcGKTllA-raiA~elg~~~--i~vsa~e-----------L~-----------sk~vGE-sEk~IR~~F---~ 201 (413)
T PLN00020 151 LGIWGGKGQGKSFQC-ELVFKKMGIEP--IVMSAGE-----------LE-----------SENAGE-PGKLIRQRY---R 201 (413)
T ss_pred EEeeCCCCCCHHHHH-HHHHHHcCCCe--EEEEHHH-----------hh-----------cCcCCc-HHHHHHHHH---H
Confidence 789999999999995 88998877664 3344331 11 111112 122223332 2
Q ss_pred hHHHH-HHcCCcEEEEEechhHH
Q psy2894 245 IGEYF-RDHGKDALVVYDDLSKQ 266 (515)
Q Consensus 245 iAE~f-rd~G~~Vlli~Dsltr~ 266 (515)
.|... +.+|+.++|++|++-..
T Consensus 202 ~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 202 EAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred HHHHHhhccCCCeEEEEehhhhc
Confidence 23332 35789999999998653
No 170
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=93.73 E-value=0.041 Score=53.32 Aligned_cols=29 Identities=28% Similarity=0.575 Sum_probs=26.1
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 24 l~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 52 (216)
T TIGR00960 24 FHITKGEMVFLVGHSGAGKSTF-LKLILGI 52 (216)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 5788999999999999999999 6888764
No 171
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=93.68 E-value=0.04 Score=53.49 Aligned_cols=29 Identities=17% Similarity=0.493 Sum_probs=25.6
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 49 (222)
T cd03224 21 LTVPEGEIVALLGRNGAGKTTL-LKTIMGL 49 (222)
T ss_pred EEEcCCeEEEEECCCCCCHHHH-HHHHhCC
Confidence 5788999999999999999999 6877754
No 172
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.67 E-value=0.12 Score=49.28 Aligned_cols=49 Identities=20% Similarity=0.299 Sum_probs=34.3
Q ss_pred ceeeecCCCCCccHHHHHHHHHh--------cCCCeEEEEEEecCChHHHHHHHHHHhh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ--------KNKNVTCIYVAIGQKISSIKKTANLLEK 214 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~--------~~~~~~~V~~~iGer~~ev~~~~~~l~~ 214 (515)
=.+|-||||||||+++...+..- ...+-.+ +.+......|.++++.+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~i--l~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKI--LVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-E--EEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccc--eeecCCchhHHHHHHHHHh
Confidence 36889999999998865555554 3334332 4567888899999999877
No 173
>PHA02542 41 41 helicase; Provisional
Probab=93.65 E-value=0.083 Score=58.07 Aligned_cols=64 Identities=11% Similarity=0.207 Sum_probs=49.9
Q ss_pred cccccccccccccc--cccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHH
Q psy2894 144 EPLQTGIKAIDSIV--PIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKK 207 (515)
Q Consensus 144 epl~TGik~ID~l~--pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~ 207 (515)
.-+.||+..+|.++ -+.+|+=+.|-|.||+|||+++++...+....+..++|...-++..++..
T Consensus 170 ~gi~TG~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql~~ 235 (473)
T PHA02542 170 NKIPFKLEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVIAK 235 (473)
T ss_pred CccCCCcHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHH
Confidence 45789999999998 48899999999999999999998777665444544566776666665533
No 174
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.64 E-value=0.81 Score=45.33 Aligned_cols=158 Identities=18% Similarity=0.165 Sum_probs=85.6
Q ss_pred CcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhh--cCC----CCcEEEEEeCCCCCHHhh
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEK--YGA----MPYTIIVAATASDSASMQ 235 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~--~~~----~~~t~vv~~t~~~~~~~r 235 (515)
|+=++|.|+.|||||.|+....--.-..+-.+-|+..-.. +.+|++.... .+. +.-...++...-+|.-.-
T Consensus 28 GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T---~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~~ 104 (235)
T COG2874 28 GSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELT---VREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNWG 104 (235)
T ss_pred CeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechh---HHHHHHHHHhcCCCchHHHhcceeEEEEecccccccC
Confidence 8999999999999999974443333344445567776654 4555555443 221 122223333211111110
Q ss_pred HHHHhhhh-hhHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccC
Q psy2894 236 FISAYSGC-TIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTN 314 (515)
Q Consensus 236 ~~a~~~a~-~iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~ 314 (515)
-.....=+ -+.|+-+-.-+|| +|+||+|-++.--.| ...-.+++...++.+
T Consensus 105 ~~~~~~~L~~l~~~~k~~~~dV-iIIDSls~~~~~~~~-------------------~~vl~fm~~~r~l~d-------- 156 (235)
T COG2874 105 RRSARKLLDLLLEFIKRWEKDV-IIIDSLSAFATYDSE-------------------DAVLNFMTFLRKLSD-------- 156 (235)
T ss_pred hHHHHHHHHHHHhhHHhhcCCE-EEEecccHHhhcccH-------------------HHHHHHHHHHHHHHh--------
Confidence 00000001 1233334334455 568999988743211 222345666677644
Q ss_pred CcccCCCCceeeeeEEeecCCCCCCcccccccccCCeEEEecchh
Q psy2894 315 GKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSL 359 (515)
Q Consensus 315 ~~~~g~~GSiT~l~~v~~~~~D~s~pI~~~~~si~Dg~i~L~r~L 359 (515)
.|- |++-| +-...+++-+-..++|+-|+++.|+..-
T Consensus 157 ------~gK-vIilT--vhp~~l~e~~~~rirs~~d~~l~L~~~~ 192 (235)
T COG2874 157 ------LGK-VIILT--VHPSALDEDVLTRIRSACDVYLRLRLEE 192 (235)
T ss_pred ------CCC-EEEEE--eChhhcCHHHHHHHHHhhheeEEEEhhh
Confidence 222 33333 3445677777888999999999998663
No 175
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.63 E-value=0.044 Score=52.98 Aligned_cols=29 Identities=17% Similarity=0.479 Sum_probs=26.3
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.|.+|+..+|+|++|+||||| +.+|...
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~ 51 (207)
T PRK13539 23 FTLAAGEALVLTGPNGSGKTTL-LRLIAGL 51 (207)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 4788999999999999999999 6888875
No 176
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=93.63 E-value=0.044 Score=54.10 Aligned_cols=29 Identities=21% Similarity=0.414 Sum_probs=26.1
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+.++|+|++|+||||| +.+|+..
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~ 51 (242)
T PRK11124 23 LDCPQGETLVLLGPSGAGKSSL-LRVLNLL 51 (242)
T ss_pred eEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 5788999999999999999999 6888764
No 177
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.61 E-value=0.035 Score=49.40 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=25.9
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.+.+|+..+|+|++|+||||| +.+|....
T Consensus 6 ~~i~~g~~~~i~G~nGsGKStL-l~~l~g~~ 35 (137)
T PF00005_consen 6 LEIKPGEIVAIVGPNGSGKSTL-LKALAGLL 35 (137)
T ss_dssp EEEETTSEEEEEESTTSSHHHH-HHHHTTSS
T ss_pred EEEcCCCEEEEEccCCCccccc-eeeecccc
Confidence 4678999999999999999999 68877654
No 178
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.61 E-value=0.044 Score=48.30 Aligned_cols=27 Identities=33% Similarity=0.358 Sum_probs=23.2
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHH
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIII 184 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~ 184 (515)
+.+..|+.++|+|++|+|||||+ .++.
T Consensus 10 l~i~~ge~v~I~GpSGsGKSTLl-~~l~ 36 (107)
T cd00820 10 VDVYGKVGVLITGDSGIGKTELA-LELI 36 (107)
T ss_pred EEEcCCEEEEEEcCCCCCHHHHH-HHhh
Confidence 46788999999999999999994 6655
No 179
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=93.61 E-value=0.045 Score=52.73 Aligned_cols=29 Identities=31% Similarity=0.481 Sum_probs=26.0
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 21 ~~i~~G~~~~l~G~nGsGKSTL-l~~l~G~ 49 (213)
T cd03262 21 LTVKKGEVVVIIGPSGSGKSTL-LRCINLL 49 (213)
T ss_pred EEECCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 4788999999999999999999 6888864
No 180
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.60 E-value=0.045 Score=53.68 Aligned_cols=29 Identities=34% Similarity=0.428 Sum_probs=26.2
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.|.+|+..+|+|++|+||||| +.+|+..
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~ 54 (233)
T cd03258 26 LSVPKGEIFGIIGRSGAGKSTL-IRCINGL 54 (233)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 5788999999999999999999 6888765
No 181
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.57 E-value=0.064 Score=51.14 Aligned_cols=49 Identities=20% Similarity=0.400 Sum_probs=31.2
Q ss_pred ccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhh
Q psy2894 159 IGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEK 214 (515)
Q Consensus 159 igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~ 214 (515)
+.+|+.+.|+|++|+|||+||..+...-...+..|.|+- +.++++.+..
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~-------~~~L~~~l~~ 92 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT-------ASDLLDELKQ 92 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE-------HHHHHHHHHC
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee-------cCceeccccc
Confidence 457899999999999999997444333334555566663 5677888763
No 182
>PF13245 AAA_19: Part of AAA domain
Probab=93.57 E-value=0.17 Score=41.56 Aligned_cols=49 Identities=14% Similarity=0.180 Sum_probs=29.3
Q ss_pred Cccee-eecCCCCCccHHHHHHHHHhcCC----CeEEEEEEecCChHHHHHHHHHH
Q psy2894 162 GQREL-IIGDRQTGKSSIAIDIIINQKNK----NVTCIYVAIGQKISSIKKTANLL 212 (515)
Q Consensus 162 Gqr~~-I~g~~g~GKt~l~~~~i~~~~~~----~~~~V~~~iGer~~ev~~~~~~l 212 (515)
|++.. |.|+||+|||+++++.+...... +-.++ .+.-..+-+.++.+.+
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vl--v~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVL--VLAPTRAAADELRERL 62 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEE--EECCCHHHHHHHHHHH
Confidence 44444 59999999998877776654311 22222 2344555666666665
No 183
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.55 E-value=0.046 Score=53.74 Aligned_cols=29 Identities=24% Similarity=0.422 Sum_probs=26.0
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 50 (241)
T cd03256 22 LSINPGEFVALIGPSGAGKSTL-LRCLNGL 50 (241)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 5788999999999999999999 6888764
No 184
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.53 E-value=0.046 Score=52.67 Aligned_cols=29 Identities=31% Similarity=0.568 Sum_probs=25.9
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|...
T Consensus 22 ~~i~~G~~~~l~G~nGsGKSTL-l~~l~G~ 50 (211)
T cd03225 22 LTIKKGEFVLIVGPNGSGKSTL-LRLLNGL 50 (211)
T ss_pred EEEcCCcEEEEECCCCCCHHHH-HHHHhcC
Confidence 4788999999999999999999 6888764
No 185
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.52 E-value=0.047 Score=54.21 Aligned_cols=29 Identities=17% Similarity=0.360 Sum_probs=25.9
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+-+|+..+|+|++|+||||| +.+|+..
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~ 52 (250)
T PRK14247 24 LEIPDNTITALMGPSGSGKSTL-LRVFNRL 52 (250)
T ss_pred eEEcCCCEEEEECCCCCCHHHH-HHHHhcc
Confidence 5788999999999999999999 6888765
No 186
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.52 E-value=0.047 Score=52.74 Aligned_cols=29 Identities=17% Similarity=0.431 Sum_probs=25.9
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|...
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~ 49 (213)
T cd03259 21 LTVEPGEFLALLGPSGCGKTTL-LRLIAGL 49 (213)
T ss_pred EEEcCCcEEEEECCCCCCHHHH-HHHHhCC
Confidence 5788999999999999999999 6888764
No 187
>PRK06921 hypothetical protein; Provisional
Probab=93.50 E-value=0.16 Score=51.51 Aligned_cols=46 Identities=17% Similarity=0.355 Sum_probs=31.0
Q ss_pred cccccccc--cCCcceeeecCCCCCccHHHHHHHHHhc-CC-CeEEEEEEe
Q psy2894 152 AIDSIVPI--GKGQRELIIGDRQTGKSSIAIDIIINQK-NK-NVTCIYVAI 198 (515)
Q Consensus 152 ~ID~l~pi--grGqr~~I~g~~g~GKt~l~~~~i~~~~-~~-~~~~V~~~i 198 (515)
.++.+-++ ..+.-+.+.|++|+|||+|+ ..|++.. .. +..++|+..
T Consensus 105 ~~~~f~~~~~~~~~~l~l~G~~G~GKThLa-~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 105 YVKDFEKIQESRKNSIALLGQPGSGKTHLL-TAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred HHHHHHHhcccCCCeEEEECCCCCcHHHHH-HHHHHHHhhhcCceEEEEEH
Confidence 44544433 35778999999999999995 6777642 22 455566663
No 188
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.49 E-value=0.047 Score=52.52 Aligned_cols=29 Identities=17% Similarity=0.355 Sum_probs=25.9
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+-+|+..+|+|++|+||||| +.+|+..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 49 (205)
T cd03226 21 LDLYAGEIIALTGKNGAGKTTL-AKILAGL 49 (205)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhcC
Confidence 4788999999999999999999 6888875
No 189
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.48 E-value=0.31 Score=45.78 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=20.4
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+|.-+.+.|++|+||||++ ..+....
T Consensus 1 ~~~~i~l~G~~gsGKst~a-~~l~~~~ 26 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIA-RALQSVL 26 (175)
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHHhh
Confidence 3667889999999999996 5565543
No 190
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.48 E-value=0.048 Score=53.82 Aligned_cols=29 Identities=21% Similarity=0.476 Sum_probs=26.2
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 51 (239)
T cd03296 23 LDIPSGELVALLGPSGSGKTTL-LRLIAGL 51 (239)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 5788999999999999999999 6888765
No 191
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.43 E-value=0.049 Score=52.77 Aligned_cols=29 Identities=31% Similarity=0.533 Sum_probs=26.0
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+-+|+..+|+|++|+||||| +.+|+..
T Consensus 25 ~~i~~G~~~~l~G~nGsGKSTL-l~~i~Gl 53 (218)
T cd03255 25 LSIEKGEFVAIVGPSGSGKSTL-LNILGGL 53 (218)
T ss_pred EEEcCCCEEEEEcCCCCCHHHH-HHHHhCC
Confidence 5788999999999999999999 6888765
No 192
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=93.42 E-value=0.05 Score=53.22 Aligned_cols=29 Identities=17% Similarity=0.409 Sum_probs=26.1
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|++.+|+|++|+||||| +.+|+..
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl 49 (232)
T cd03218 21 LSVKQGEIVGLLGPNGAGKTTT-FYMIVGL 49 (232)
T ss_pred eEecCCcEEEEECCCCCCHHHH-HHHHhCC
Confidence 5788999999999999999999 6888764
No 193
>PRK08084 DNA replication initiation factor; Provisional
Probab=93.41 E-value=0.067 Score=53.10 Aligned_cols=38 Identities=11% Similarity=0.159 Sum_probs=26.2
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHhc-CCCeEEEEEEe
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQK-NKNVTCIYVAI 198 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~~-~~~~~~V~~~i 198 (515)
..+..+.|.|++|+|||+|+ ..+.++. ..+..++|.-.
T Consensus 43 ~~~~~l~l~Gp~G~GKThLl-~a~~~~~~~~~~~v~y~~~ 81 (235)
T PRK08084 43 EHSGYIYLWSREGAGRSHLL-HAACAELSQRGRAVGYVPL 81 (235)
T ss_pred CCCCeEEEECCCCCCHHHHH-HHHHHHHHhCCCeEEEEEH
Confidence 34567899999999999995 6666542 23445566654
No 194
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=93.39 E-value=0.33 Score=51.03 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=18.7
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
-+.|-|+||||||.||++....-
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 46899999999999987665544
No 195
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.38 E-value=0.052 Score=50.63 Aligned_cols=30 Identities=20% Similarity=0.537 Sum_probs=26.5
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.+-+|+.++|+|++|+||||| +.+|....
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTL-l~~i~G~~ 50 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTL-MKILSGLY 50 (163)
T ss_pred EEEeCCCEEEEECCCCCCHHHH-HHHHhCCC
Confidence 5788999999999999999999 68887653
No 196
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=93.37 E-value=0.052 Score=52.45 Aligned_cols=29 Identities=21% Similarity=0.492 Sum_probs=25.7
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+-+|+.++|+|++|+||||| +..|...
T Consensus 23 ~~i~~G~~~~l~G~nGsGKSTL-l~~i~Gl 51 (214)
T TIGR02673 23 LHIRKGEFLFLTGPSGAGKTTL-LKLLYGA 51 (214)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 5788999999999999999999 5877764
No 197
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.36 E-value=0.052 Score=50.95 Aligned_cols=29 Identities=28% Similarity=0.544 Sum_probs=25.9
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKStL-l~~l~G~ 49 (173)
T cd03230 21 LTVEKGEIYGLLGPNGAGKTTL-IKIILGL 49 (173)
T ss_pred EEEcCCcEEEEECCCCCCHHHH-HHHHhCC
Confidence 4778999999999999999999 6888764
No 198
>PRK09165 replicative DNA helicase; Provisional
Probab=93.36 E-value=0.096 Score=57.89 Aligned_cols=43 Identities=23% Similarity=0.448 Sum_probs=37.3
Q ss_pred cccccccccccccc-cccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 144 EPLQTGIKAIDSIV-PIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 144 epl~TGik~ID~l~-pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.-+.||+.-+|.++ -+.+|+=+.|-|.||+|||+++++...+.
T Consensus 198 ~gi~TG~~~LD~~~gG~~~g~livIaarpg~GKT~~al~ia~~~ 241 (497)
T PRK09165 198 SGISTGLRDLDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNA 241 (497)
T ss_pred CcccCChHHHhhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHH
Confidence 35789999999987 68889999999999999999998776553
No 199
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=93.34 E-value=0.052 Score=53.45 Aligned_cols=29 Identities=17% Similarity=0.422 Sum_probs=25.8
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~ 50 (236)
T TIGR03864 22 FTVRPGEFVALLGPNGAGKSTL-FSLLTRL 50 (236)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 5788999999999999999999 6888764
No 200
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=93.34 E-value=1.2 Score=49.26 Aligned_cols=197 Identities=12% Similarity=0.027 Sum_probs=136.6
Q ss_pred CCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchh
Q psy2894 228 ASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIK 307 (515)
Q Consensus 228 ~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~ 307 (515)
..++..+..+|-++.+.+++++++.++|+=.-++.+.+++..++|...-+..-+. ..||+- +..+.|-+|-+.
T Consensus 291 iaNTSnMPVAAREasIYtGiTiaEY~RDmGy~v~lmADSTSRWAEAlREisgRle--EmPgee-gyPaYL~srlA~---- 363 (588)
T COG1155 291 IANTSNMPVAAREASIYTGITIAEYYRDMGYDVALMADSTSRWAEALREISGRLE--EMPGEE-GYPAYLGSRLAE---- 363 (588)
T ss_pred eecCccchHHHhhhhhhhhhhHHHHHHhhhhhhHHhhchHHHHHHHHHHHhcccc--cCCccc-ccchHHHHHHHH----
Confidence 3445677899999999999999999999999999999999999997654443333 355543 234444444443
Q ss_pred hhhcccCCcccCCCCceeeeeEEeecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHH
Q psy2894 308 YVENYTNGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIK 387 (515)
Q Consensus 308 ~~~~~~~~~~~g~~GSiT~l~~v~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~ 387 (515)
|-++.+.....+ +++.|..-+|--..++...++.++|-+.|=..|-+.-.|.++.++|-..|..+.+-.-+
T Consensus 364 fYERaG~v~~~~-~~~r~GsvtV~gaVSPpGGdfSEPVtq~Tlriv~vFw~Ld~~la~~rhfPaInwl~syS-------- 434 (588)
T COG1155 364 FYERAGRVRLVS-PEERFGSITVIGAVSPPGGDFSEPVTQNTLRVVRVFWALDAALANRRHFPSINWLNSYS-------- 434 (588)
T ss_pred HHHhcCeeeecC-CCcceEEEEEecCCCCCCCCcCcccchheeeeeeeecccchhhhhcccCcccChHHHHH--------
Confidence 345566555555 88999988888888999999999999999999999999999999999999888763311
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhc---cCCCHHHHHHHHhhHHHhhcccccccCCCCHHHHHHHH
Q psy2894 388 KLSSNIRTDLAQYRELAAFSQFS---SDLDLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVIL 448 (515)
Q Consensus 388 ~~a~~lr~~la~y~el~~~~~~g---~~ld~~~~~~l~~~~~i~~~L~Q~~~~~~~~~~~~~~l 448 (515)
..+..+.+|-+- +.+ ..+-+..+..+++...+++..+--..+..+-.+.+...
T Consensus 435 ----~Y~~~~~~~~~~----~v~~~~~~~r~~a~~~Lq~e~elqeiv~lVG~eal~e~~~~il~ 490 (588)
T COG1155 435 ----LYTEDLRSWYDE----NVSPEWGALRDQAMEILQRESELQEIVQLVGYDALPEKEKSILD 490 (588)
T ss_pred ----HHHHHHHHHhhc----ccCchHHHHHHHHHHHHHHHHHHHHHHHHhCccccchHHHHHHH
Confidence 111112211110 001 11123344556777777776666666777766666544
No 201
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.31 E-value=0.053 Score=53.06 Aligned_cols=30 Identities=17% Similarity=0.476 Sum_probs=26.3
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
=+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~ 49 (230)
T TIGR03410 20 SLEVPKGEVTCVLGRNGVGKTTL-LKTLMGL 49 (230)
T ss_pred eeEECCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 45788999999999999999999 6887764
No 202
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.28 E-value=0.051 Score=52.83 Aligned_cols=29 Identities=24% Similarity=0.491 Sum_probs=26.0
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.|.+|+..+|+|++|+||||| +.+|...
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTL-l~~l~Gl 53 (220)
T cd03293 25 LSVEEGEFVALVGPSGCGKSTL-LRIIAGL 53 (220)
T ss_pred EEEeCCcEEEEECCCCCCHHHH-HHHHhCC
Confidence 5788999999999999999999 6888765
No 203
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=93.28 E-value=0.053 Score=53.49 Aligned_cols=29 Identities=14% Similarity=0.393 Sum_probs=26.4
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+.++|+|++|+||||| +.+|+..
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~ 52 (241)
T PRK10895 24 LTVNSGEIVGLLGPNGAGKTTT-FYMVVGI 52 (241)
T ss_pred EEEcCCcEEEEECCCCCCHHHH-HHHHhCC
Confidence 6788999999999999999999 6888875
No 204
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=93.28 E-value=0.05 Score=53.38 Aligned_cols=29 Identities=21% Similarity=0.439 Sum_probs=25.8
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 21 l~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl 49 (236)
T cd03219 21 FSVRPGEIHGLIGPNGAGKTTL-FNLISGF 49 (236)
T ss_pred EEecCCcEEEEECCCCCCHHHH-HHHHcCC
Confidence 5788999999999999999999 6888764
No 205
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=93.27 E-value=0.055 Score=52.24 Aligned_cols=29 Identities=21% Similarity=0.462 Sum_probs=25.9
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~ 49 (213)
T cd03301 21 LDIADGEFVVLLGPSGCGKTTT-LRMIAGL 49 (213)
T ss_pred EEEcCCcEEEEECCCCCCHHHH-HHHHhCC
Confidence 4688999999999999999999 6888865
No 206
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.27 E-value=0.65 Score=46.00 Aligned_cols=35 Identities=26% Similarity=0.252 Sum_probs=27.8
Q ss_pred cccccccccccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 150 IKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 150 ik~ID~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
...-|.-+.+..|++.+|.|+.+.|||++ +.+|..
T Consensus 19 ~v~n~i~~~~~~g~~~~itG~N~~GKStl-l~~i~~ 53 (222)
T cd03287 19 FVPNDIHLSAEGGYCQIITGPNMGGKSSY-IRQVAL 53 (222)
T ss_pred EEEEeEEEEecCCcEEEEECCCCCCHHHH-HHHHHH
Confidence 34556666778999999999999999999 566554
No 207
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.27 E-value=0.055 Score=53.81 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=26.0
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 25 ~~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~ 53 (253)
T PRK14267 25 LKIPQNGVFALMGPSGCGKSTL-LRTFNRL 53 (253)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhcc
Confidence 5789999999999999999999 6887764
No 208
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.24 E-value=0.055 Score=53.78 Aligned_cols=28 Identities=18% Similarity=0.339 Sum_probs=25.2
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
+.+.+|+..+|+|++|+||||| +.+|+.
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTL-l~~l~G 53 (252)
T PRK14255 26 LDFNQNEITALIGPSGCGKSTY-LRTLNR 53 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhc
Confidence 5788999999999999999999 688875
No 209
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.23 E-value=0.085 Score=50.63 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=26.1
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+.++|+|++|+||||| +.+|+..
T Consensus 22 ~~i~~Ge~~~l~G~nGsGKSTL-l~~i~G~ 50 (200)
T PRK13540 22 FHLPAGGLLHLKGSNGAGKTTL-LKLIAGL 50 (200)
T ss_pred EEECCCCEEEEECCCCCCHHHH-HHHHhcC
Confidence 5788999999999999999999 6888765
No 210
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.23 E-value=0.055 Score=52.59 Aligned_cols=29 Identities=21% Similarity=0.519 Sum_probs=25.7
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|++++|+|++|+||||| +.+|+..
T Consensus 32 ~~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~ 60 (214)
T PRK13543 32 FHVDAGEALLVQGDNGAGKTTL-LRVLAGL 60 (214)
T ss_pred EEECCCCEEEEEcCCCCCHHHH-HHHHhCC
Confidence 5788999999999999999999 6888753
No 211
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.21 E-value=0.056 Score=52.14 Aligned_cols=32 Identities=22% Similarity=0.435 Sum_probs=28.7
Q ss_pred cccccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 154 DSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 154 D~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
|.=+.+.+|++.+|+|+.|+||||| +.+|+..
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTL-l~~l~gl 47 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTL-LNLIAGF 47 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 6668899999999999999999999 6888864
No 212
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.20 E-value=0.058 Score=52.46 Aligned_cols=31 Identities=16% Similarity=0.329 Sum_probs=26.8
Q ss_pred ccccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 155 SIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 155 ~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.=+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~ 49 (220)
T cd03265 19 VSFRVRRGEIFGLLGPNGAGKTTT-IKMLTTL 49 (220)
T ss_pred eeEEECCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 346788999999999999999999 6888764
No 213
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=93.20 E-value=0.052 Score=52.46 Aligned_cols=29 Identities=24% Similarity=0.454 Sum_probs=25.6
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+.++|+|++|+||||| +.+|+..
T Consensus 20 l~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~ 48 (213)
T cd03235 20 FEVKPGEFLAIVGPNGAGKSTL-LKAILGL 48 (213)
T ss_pred eEEcCCCEEEEECCCCCCHHHH-HHHHcCC
Confidence 4788999999999999999999 6877764
No 214
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.20 E-value=0.057 Score=51.63 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=27.5
Q ss_pred ccccccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 153 IDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 153 ID~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.|.=+.+.+|++.+|+|++|+||||| +.+|+..
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~ 49 (195)
T PRK13541 17 FDLSITFLPSAITYIKGANGCGKSSL-LRMIAGI 49 (195)
T ss_pred EEEEEEEcCCcEEEEECCCCCCHHHH-HHHHhcC
Confidence 34335788999999999999999999 6888864
No 215
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=93.20 E-value=0.056 Score=54.21 Aligned_cols=29 Identities=17% Similarity=0.502 Sum_probs=26.0
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+.++|+|++|+||||| +.+|+..
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 50 (255)
T PRK11248 22 LTLESGELLVVLGPSGCGKTTL-LNLIAGF 50 (255)
T ss_pred EEECCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 5788999999999999999999 6888764
No 216
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=93.15 E-value=0.059 Score=52.41 Aligned_cols=29 Identities=28% Similarity=0.495 Sum_probs=25.9
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+-+|+.++|+|++|+||||| +.+|...
T Consensus 26 ~~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~ 54 (228)
T cd03257 26 FSIKKGETLGLVGESGSGKSTL-ARAILGL 54 (228)
T ss_pred eEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 5778999999999999999999 6888864
No 217
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.15 E-value=0.057 Score=51.12 Aligned_cols=29 Identities=14% Similarity=0.237 Sum_probs=26.1
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTL-l~~l~G~ 49 (182)
T cd03215 21 FEVRAGEIVGIAGLVGNGQTEL-AEALFGL 49 (182)
T ss_pred EEEcCCcEEEEECCCCCCHHHH-HHHHhCC
Confidence 5788999999999999999999 6888865
No 218
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.13 E-value=0.4 Score=50.38 Aligned_cols=47 Identities=23% Similarity=0.364 Sum_probs=30.7
Q ss_pred cccccc-ccCCcceeeecCCCCCccHHHHHHHHHh-cCCCeEEEEEEecC
Q psy2894 153 IDSIVP-IGKGQRELIIGDRQTGKSSIAIDIIINQ-KNKNVTCIYVAIGQ 200 (515)
Q Consensus 153 ID~l~p-igrGqr~~I~g~~g~GKt~l~~~~i~~~-~~~~~~~V~~~iGe 200 (515)
++.+.| -|+.-+++|.|++|+||||+ ++.++.. ...+..+.++++.-
T Consensus 46 ~~~~~~~~~~~~~igi~G~~GaGKSTl-~~~l~~~l~~~g~~v~vi~~Dp 94 (332)
T PRK09435 46 LDALLPHTGNALRIGITGVPGVGKSTF-IEALGMHLIEQGHKVAVLAVDP 94 (332)
T ss_pred HHHHhhcCCCcEEEEEECCCCCCHHHH-HHHHHHHHHHCCCeEEEEEeCC
Confidence 333443 46677999999999999999 4665543 33344445555553
No 219
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=93.11 E-value=1.9 Score=43.45 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=21.5
Q ss_pred CcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
--|++++|.+|+|||+| ++.|.+..
T Consensus 31 ~~~IllvG~tGvGKSSl-iNaLlg~~ 55 (249)
T cd01853 31 SLTILVLGKTGVGKSST-INSIFGER 55 (249)
T ss_pred CeEEEEECCCCCcHHHH-HHHHhCCC
Confidence 34899999999999999 79888754
No 220
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.10 E-value=0.06 Score=53.23 Aligned_cols=29 Identities=28% Similarity=0.503 Sum_probs=25.9
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|...
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~ 50 (242)
T cd03295 22 LEIAKGEFLVLIGPSGSGKTTT-MKMINRL 50 (242)
T ss_pred EEECCCCEEEEECCCCCCHHHH-HHHHhcC
Confidence 5788999999999999999999 6888764
No 221
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.09 E-value=0.059 Score=52.98 Aligned_cols=29 Identities=28% Similarity=0.570 Sum_probs=26.2
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~ 49 (235)
T cd03261 21 LDVRRGEILAIIGPSGSGKSTL-LRLIVGL 49 (235)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 5889999999999999999999 6888764
No 222
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.08 E-value=0.065 Score=51.47 Aligned_cols=29 Identities=28% Similarity=0.549 Sum_probs=26.2
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+-+|++.+|+|++|+||||| +.+|+..
T Consensus 26 ~~i~~G~~~~i~G~nG~GKSTL-l~~i~G~ 54 (204)
T cd03250 26 LEVPKGELVAIVGPVGSGKSSL-LSALLGE 54 (204)
T ss_pred EEECCCCEEEEECCCCCCHHHH-HHHHhCc
Confidence 5888999999999999999999 6888764
No 223
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=93.08 E-value=0.088 Score=50.37 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=27.8
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhcCCC
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKN 190 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~ 190 (515)
+.+-+|.+++|.||+|+||||| +.++++--..+
T Consensus 24 l~v~~Ge~iaitGPSG~GKStl-lk~va~Lisp~ 56 (223)
T COG4619 24 LSVRAGEFIAITGPSGCGKSTL-LKIVASLISPT 56 (223)
T ss_pred eeecCCceEEEeCCCCccHHHH-HHHHHhccCCC
Confidence 4678999999999999999999 68888764443
No 224
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=93.08 E-value=0.06 Score=52.14 Aligned_cols=29 Identities=14% Similarity=0.378 Sum_probs=25.8
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+.++|.|++|+||||| +.+|+..
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 54 (218)
T cd03266 26 FTVKPGEVTGLLGPNGAGKTTT-LRMLAGL 54 (218)
T ss_pred EEEcCCcEEEEECCCCCCHHHH-HHHHhCC
Confidence 5778999999999999999999 6888764
No 225
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=93.05 E-value=0.064 Score=50.33 Aligned_cols=29 Identities=31% Similarity=0.518 Sum_probs=26.0
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStL-l~~l~G~ 51 (173)
T cd03246 23 FSIEPGESLAIIGPSGSGKSTL-ARLILGL 51 (173)
T ss_pred EEECCCCEEEEECCCCCCHHHH-HHHHHhc
Confidence 5778999999999999999999 6888875
No 226
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.04 E-value=0.065 Score=52.77 Aligned_cols=27 Identities=41% Similarity=0.535 Sum_probs=23.8
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHH
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDII 183 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i 183 (515)
+.+.+|+.++|+|++|+|||||+...|
T Consensus 16 l~i~~Ge~~~l~G~sGsGKSTL~~~~i 42 (226)
T cd03270 16 VDIPRNKLVVITGVSGSGKSSLAFDTI 42 (226)
T ss_pred eecCCCcEEEEEcCCCCCHHHHHHHHH
Confidence 588999999999999999999964544
No 227
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=93.04 E-value=0.064 Score=52.76 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=26.4
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
=+.|.+|+.++|+|++|+||||| +.+|+..
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 49 (243)
T TIGR01978 20 NLTVKKGEIHAIMGPNGSGKSTL-SKTIAGH 49 (243)
T ss_pred ceEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 35788999999999999999999 6888764
No 228
>PRK08506 replicative DNA helicase; Provisional
Probab=93.03 E-value=0.13 Score=56.57 Aligned_cols=62 Identities=15% Similarity=0.353 Sum_probs=48.0
Q ss_pred ccccccccccccc-cccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHH
Q psy2894 145 PLQTGIKAIDSIV-PIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIK 206 (515)
Q Consensus 145 pl~TGik~ID~l~-pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~ 206 (515)
-+.||+..+|.++ -+-+|+=+.|-|.||+|||+++++...+....+-.++|...-....++.
T Consensus 174 Gi~TG~~~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~ 236 (472)
T PRK08506 174 GLDTGFVELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLM 236 (472)
T ss_pred cccCChHHHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHH
Confidence 4889999999996 4678999999999999999999887776544444456666666665554
No 229
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.02 E-value=0.37 Score=51.33 Aligned_cols=89 Identities=18% Similarity=0.260 Sum_probs=52.3
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc---CCCeEEEEEEecCChHHHHHHHHH-HhhcCCCCcEEEEEeCCCCCHHhhHHHH
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK---NKNVTCIYVAIGQKISSIKKTANL-LEKYGAMPYTIIVAATASDSASMQFISA 239 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~---~~~~~~V~~~iGer~~ev~~~~~~-l~~~~~~~~t~vv~~t~~~~~~~r~~a~ 239 (515)
.+.|-|++|||||++ +..+..+- ..+..++|+=|=+-... ..++.. +.+-+ ..|.......
T Consensus 44 n~~iyG~~GTGKT~~-~~~v~~~l~~~~~~~~~~yINc~~~~t~-~~i~~~i~~~~~-------------~~p~~g~~~~ 108 (366)
T COG1474 44 NIIIYGPTGTGKTAT-VKFVMEELEESSANVEVVYINCLELRTP-YQVLSKILNKLG-------------KVPLTGDSSL 108 (366)
T ss_pred cEEEECCCCCCHhHH-HHHHHHHHHhhhccCceEEEeeeeCCCH-HHHHHHHHHHcC-------------CCCCCCCchH
Confidence 488999999999999 46666652 23333677776544433 333333 22211 2222222222
Q ss_pred hhhhhhHHHHHHcCCcEEEEEechhHHH
Q psy2894 240 YSGCTIGEYFRDHGKDALVVYDDLSKQA 267 (515)
Q Consensus 240 ~~a~~iAE~frd~G~~Vlli~Dsltr~a 267 (515)
..=..+-+++..+++.++|++|++-.+.
T Consensus 109 ~~~~~l~~~~~~~~~~~IvvLDEid~L~ 136 (366)
T COG1474 109 EILKRLYDNLSKKGKTVIVILDEVDALV 136 (366)
T ss_pred HHHHHHHHHHHhcCCeEEEEEcchhhhc
Confidence 2223345566678999999999987754
No 230
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=93.01 E-value=0.061 Score=53.49 Aligned_cols=29 Identities=28% Similarity=0.607 Sum_probs=26.1
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.|.+|+..+|+|++|+||||| +.+|+..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~ 49 (252)
T TIGR03005 21 FSVAAGEKVALIGPSGSGKSTI-LRILMTL 49 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 5788999999999999999999 6888764
No 231
>PRK08118 topology modulation protein; Reviewed
Probab=93.01 E-value=0.08 Score=49.85 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=20.2
Q ss_pred cceeeecCCCCCccHHHHHHHHHhc
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+|+.|+|++|+||||+| ..+.+.-
T Consensus 2 ~rI~I~G~~GsGKSTla-k~L~~~l 25 (167)
T PRK08118 2 KKIILIGSGGSGKSTLA-RQLGEKL 25 (167)
T ss_pred cEEEEECCCCCCHHHHH-HHHHHHh
Confidence 68999999999999996 6666653
No 232
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.00 E-value=0.063 Score=52.09 Aligned_cols=29 Identities=17% Similarity=0.410 Sum_probs=26.1
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|...
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 51 (220)
T cd03263 23 LNVYKGEIFGLLGHNGAGKTTT-LKMLTGE 51 (220)
T ss_pred EEEcCCcEEEEECCCCCCHHHH-HHHHhCC
Confidence 5788999999999999999999 6888864
No 233
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=93.00 E-value=0.063 Score=51.69 Aligned_cols=29 Identities=24% Similarity=0.450 Sum_probs=25.9
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTL-l~~l~Gl 49 (208)
T cd03268 21 LHVKKGEIYGFLGPNGAGKTTT-MKIILGL 49 (208)
T ss_pred EEEcCCcEEEEECCCCCCHHHH-HHHHhCC
Confidence 4788999999999999999999 6888764
No 234
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.99 E-value=0.063 Score=53.25 Aligned_cols=29 Identities=31% Similarity=0.362 Sum_probs=25.7
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+.++|+|++|+||||| +.+|+..
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTL-l~~i~Gl 52 (250)
T PRK14262 24 MKIFKNQITAIIGPSGCGKTTL-LRSINRM 52 (250)
T ss_pred EeecCCCEEEEECCCCCCHHHH-HHHHhcc
Confidence 5778999999999999999999 6888753
No 235
>PRK06893 DNA replication initiation factor; Validated
Probab=92.97 E-value=0.29 Score=48.36 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=18.0
Q ss_pred eeeecCCCCCccHHHHHHHHHh
Q psy2894 165 ELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 165 ~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
..|.|++|+|||+| +..|+|.
T Consensus 42 l~l~G~~G~GKThL-~~ai~~~ 62 (229)
T PRK06893 42 FYIWGGKSSGKSHL-LKAVSNH 62 (229)
T ss_pred EEEECCCCCCHHHH-HHHHHHH
Confidence 68999999999999 4777765
No 236
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=92.96 E-value=0.064 Score=52.95 Aligned_cols=29 Identities=24% Similarity=0.472 Sum_probs=26.0
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|++.+|+|++|+||||| +.+|...
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTL-l~~i~G~ 49 (237)
T TIGR00968 21 LEVPTGSLVALLGPSGSGKSTL-LRIIAGL 49 (237)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhcC
Confidence 4789999999999999999999 6888864
No 237
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=92.96 E-value=0.068 Score=51.42 Aligned_cols=30 Identities=27% Similarity=0.514 Sum_probs=26.4
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
=+.+.+|++++|+|++|+||||| +.+|+..
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKStL-l~~l~G~ 49 (200)
T cd03217 20 NLTIKKGEVHALMGPNGSGKSTL-AKTIMGH 49 (200)
T ss_pred ceEECCCcEEEEECCCCCCHHHH-HHHHhCC
Confidence 35889999999999999999999 6888764
No 238
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.95 E-value=0.075 Score=53.52 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=27.5
Q ss_pred ccccccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 153 IDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 153 ID~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
++.+..+.+|++.+|+|++|+||||| +.+|...-
T Consensus 17 l~~i~~i~~Ge~~~IvG~nGsGKSTL-lk~l~Gl~ 50 (255)
T cd03236 17 LHRLPVPREGQVLGLVGPNGIGKSTA-LKILAGKL 50 (255)
T ss_pred hhcCCCCCCCCEEEEECCCCCCHHHH-HHHHhCCc
Confidence 33333489999999999999999999 68887653
No 239
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=92.95 E-value=0.065 Score=52.05 Aligned_cols=29 Identities=34% Similarity=0.570 Sum_probs=26.0
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.|.+|+..+|+|++|+||||| +.+|+..
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~ 50 (218)
T cd03290 22 IRIPTGQLTMIVGQVGCGKSSL-LLAILGE 50 (218)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhcc
Confidence 4788999999999999999999 6888864
No 240
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=92.94 E-value=0.063 Score=52.73 Aligned_cols=32 Identities=25% Similarity=0.492 Sum_probs=27.7
Q ss_pred cccccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 154 DSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 154 D~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
|.=+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl 48 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTL-LNLIAGF 48 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 5567889999999999999999999 6877653
No 241
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.93 E-value=0.69 Score=50.29 Aligned_cols=94 Identities=15% Similarity=0.195 Sum_probs=51.5
Q ss_pred cceeeecCCCCCccHHHHHHHHHhc-CCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhh
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQK-NKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYS 241 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~~-~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~ 241 (515)
.-+.+.|++|+||||++......-. ..+..+.++.++-+...+.+-++.+.+.-.. .+..+.+..+ |.. .
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gv--p~~~~~~~~~-P~~------i 170 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGV--PVFALGKGQS-PVE------I 170 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCC--ceEecCCCCC-HHH------H
Confidence 4688999999999999744433322 3455678889987766655544444322111 1222222223 321 1
Q ss_pred hhhhHHHHHHcCCcEEEEEechhHH
Q psy2894 242 GCTIGEYFRDHGKDALVVYDDLSKQ 266 (515)
Q Consensus 242 a~~iAE~frd~G~~Vlli~Dsltr~ 266 (515)
+-..-+++.+.++| +||+|.--|+
T Consensus 171 ~~~al~~~~~~~~D-vVIIDTaGr~ 194 (428)
T TIGR00959 171 ARRALEYAKENGFD-VVIVDTAGRL 194 (428)
T ss_pred HHHHHHHHHhcCCC-EEEEeCCCcc
Confidence 11223345566666 4567776654
No 242
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=92.93 E-value=0.065 Score=52.67 Aligned_cols=29 Identities=28% Similarity=0.571 Sum_probs=26.0
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+.++|+|++|+||||| +.+|+..
T Consensus 30 l~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl 58 (233)
T PRK11629 30 FSIGEGEMMAIVGSSGSGKSTL-LHLLGGL 58 (233)
T ss_pred EEEcCCcEEEEECCCCCCHHHH-HHHHhcC
Confidence 5788999999999999999999 6888764
No 243
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.93 E-value=0.065 Score=52.49 Aligned_cols=29 Identities=24% Similarity=0.503 Sum_probs=25.6
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 51 (234)
T cd03251 23 LDIPAGETVALVGPSGSGKSTL-VNLIPRF 51 (234)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhcc
Confidence 4788999999999999999999 6887754
No 244
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=92.93 E-value=0.065 Score=51.97 Aligned_cols=29 Identities=28% Similarity=0.557 Sum_probs=26.2
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|...
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTL-l~~i~G~ 53 (220)
T cd03245 25 LTIRAGEKVAIIGRVGSGKSTL-LKLLAGL 53 (220)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhcC
Confidence 5788999999999999999999 6888765
No 245
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=92.93 E-value=0.063 Score=53.65 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=26.0
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+.++|+|++|+||||| +.+|+..
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTL-l~~laGl 53 (258)
T PRK14241 25 LNIEPRSVTAFIGPSGCGKSTV-LRTLNRM 53 (258)
T ss_pred EEEcCCcEEEEECCCCCCHHHH-HHHHhcc
Confidence 5788999999999999999999 6888764
No 246
>PRK10908 cell division protein FtsE; Provisional
Probab=92.91 E-value=0.067 Score=52.09 Aligned_cols=29 Identities=21% Similarity=0.471 Sum_probs=26.0
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~ 51 (222)
T PRK10908 23 FHMRPGEMAFLTGHSGAGKSTL-LKLICGI 51 (222)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 5788999999999999999999 6888765
No 247
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=92.88 E-value=0.067 Score=53.08 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=27.4
Q ss_pred cccccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 154 DSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 154 D~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
|.=+.|.+|+..+|+|++|+||||| +.+|+..
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~ 52 (250)
T PRK14240 21 KINLDIEENQVTALIGPSGCGKSTF-LRTLNRM 52 (250)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHH-HHHHhcc
Confidence 4446788999999999999999999 6888753
No 248
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=92.88 E-value=0.068 Score=52.10 Aligned_cols=29 Identities=14% Similarity=0.274 Sum_probs=26.1
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 8 ~~i~~Ge~~~l~G~NGsGKSTL-lk~i~Gl 36 (213)
T PRK15177 8 FVMGYHEHIGILAAPGSGKTTL-TRLLCGL 36 (213)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 5789999999999999999999 6888864
No 249
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=92.86 E-value=0.07 Score=51.33 Aligned_cols=31 Identities=16% Similarity=0.397 Sum_probs=26.8
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
=+.+-+|++++|+|++|+||||| +..|....
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~~ 50 (201)
T cd03231 20 SFTLAAGEALQVTGPNGSGKTTL-LRILAGLS 50 (201)
T ss_pred eEEEcCCCEEEEECCCCCCHHHH-HHHHhCCC
Confidence 35788999999999999999999 68887653
No 250
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=92.86 E-value=0.066 Score=53.21 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=25.7
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 27 ~~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 55 (253)
T PRK14242 27 LEFEQNQVTALIGPSGCGKSTF-LRCLNRM 55 (253)
T ss_pred EEEeCCCEEEEECCCCCCHHHH-HHHHHhh
Confidence 4788999999999999999999 6888753
No 251
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=92.85 E-value=0.065 Score=53.57 Aligned_cols=31 Identities=16% Similarity=0.352 Sum_probs=27.1
Q ss_pred ccccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 155 SIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 155 ~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.=+.+.+|+.++|+|++|+||||| +.+|+..
T Consensus 25 is~~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 55 (258)
T PRK11701 25 VSFDLYPGEVLGIVGESGSGKTTL-LNALSAR 55 (258)
T ss_pred eeEEEeCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 345789999999999999999999 6888865
No 252
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=92.83 E-value=0.81 Score=43.13 Aligned_cols=96 Identities=15% Similarity=0.170 Sum_probs=61.0
Q ss_pred ceeeecCCCCCccHHHHHHHHHhcCCCeEEEE--EEec-CChHHHHHHHHHHhhcCCCCcEEEEE-eCC----CCCHHhh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQKNKNVTCIY--VAIG-QKISSIKKTANLLEKYGAMPYTIIVA-ATA----SDSASMQ 235 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~--~~iG-er~~ev~~~~~~l~~~~~~~~t~vv~-~t~----~~~~~~r 235 (515)
-+-|..++|.|||++|+.+.++....+..+.+ -.=| ....|.. +++.+. .-.++. ... .+.+...
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~-~l~~l~------~v~~~~~g~~~~~~~~~~~~~ 76 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELK-ALERLP------NIEIHRMGRGFFWTTENDEED 76 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHH-HHHhCC------CcEEEECCCCCccCCCChHHH
Confidence 46688899999999999888887666655433 2334 2334432 444442 111111 111 1335566
Q ss_pred HHHHhhhhhhHHHHHHcCCcEEEEEechhHH
Q psy2894 236 FISAYSGCTIGEYFRDHGKDALVVYDDLSKQ 266 (515)
Q Consensus 236 ~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~ 266 (515)
..++..+...|......|.-=|||+|.+..-
T Consensus 77 ~~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a 107 (159)
T cd00561 77 IAAAAEGWAFAKEAIASGEYDLVILDEINYA 107 (159)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEechHhH
Confidence 6777788888888877888888999998764
No 253
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.82 E-value=0.067 Score=53.49 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=25.7
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.|.+|+..+|+|++|+||||| +.+|+..
T Consensus 33 ~~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~ 61 (259)
T PRK14274 33 LSIPENEVTAIIGPSGCGKSTF-IKTLNLM 61 (259)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHHhh
Confidence 5788999999999999999999 6888754
No 254
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=92.82 E-value=0.64 Score=50.50 Aligned_cols=49 Identities=10% Similarity=0.076 Sum_probs=29.3
Q ss_pred CcceeeecCCCCCccHHHHHHHHHh-cCCCeEEEEEEecCChHHHHHHHHH
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQ-KNKNVTCIYVAIGQKISSIKKTANL 211 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~-~~~~~~~V~~~iGer~~ev~~~~~~ 211 (515)
-..++++|++|+||||++ ..++.. +..+..+.+++++--.....+..+.
T Consensus 100 ~~vi~lvG~~GvGKTTta-aKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~ 149 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTC-TKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQ 149 (429)
T ss_pred CeEEEEECCCCCCHHHHH-HHHHHHHHHCCCCEEEEcCcccchhHHHHHHH
Confidence 457899999999999996 444332 2233345556666433333343333
No 255
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=92.82 E-value=0.35 Score=45.94 Aligned_cols=88 Identities=18% Similarity=0.272 Sum_probs=58.4
Q ss_pred ceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCCh-HHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKI-SSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSG 242 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~-~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a 242 (515)
.++|.|++.+|||+.| +..+.+....+ +|++.|+-. .|+.+=++...+.- ... +.....-
T Consensus 2 ~ilvtGgaRSGKS~~A-E~la~~~~~~v--~YvAT~~a~D~Em~~RI~~Hr~rR--p~~--------------W~tvE~~ 62 (175)
T COG2087 2 MILVTGGARSGKSSFA-EALAGESGGQV--LYVATGRAFDDEMQERIAHHRARR--PEH--------------WRTVEAP 62 (175)
T ss_pred eEEEecCccCCchHHH-HHHHHhhCCce--EEEEecCCCCHHHHHHHHHHHhcC--CCc--------------ceEEecc
Confidence 4789999999999996 87777766664 899999988 66666666554311 111 1111222
Q ss_pred hhhHHHHHHcCC-cEEEEEechhHHHHHH
Q psy2894 243 CTIGEYFRDHGK-DALVVYDDLSKQAVAY 270 (515)
Q Consensus 243 ~~iAE~frd~G~-~Vlli~Dsltr~a~A~ 270 (515)
..+|+.+..... +-++++|.||-|-.-+
T Consensus 63 ~~l~~~L~~~~~~~~~VLvDcLt~wvtNl 91 (175)
T COG2087 63 LDLATLLEALIEPGDVVLVDCLTLWVTNL 91 (175)
T ss_pred ccHHHHHHhcccCCCEEEEEcHHHHHHHH
Confidence 445666664333 3667789999987544
No 256
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=92.81 E-value=0.068 Score=52.70 Aligned_cols=29 Identities=28% Similarity=0.625 Sum_probs=26.1
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~ 51 (242)
T TIGR03411 23 LYVDPGELRVIIGPNGAGKTTM-MDVITGK 51 (242)
T ss_pred EEEcCCcEEEEECCCCCCHHHH-HHHHhCC
Confidence 5788999999999999999999 6888764
No 257
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=92.81 E-value=0.068 Score=53.03 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=25.2
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
+.+.+|+.++|+|++|+||||| +.+|..
T Consensus 26 ~~i~~Ge~~~i~G~nGsGKSTL-l~~l~G 53 (252)
T PRK14239 26 LDFYPNEITALIGPSGSGKSTL-LRSINR 53 (252)
T ss_pred EEEcCCcEEEEECCCCCCHHHH-HHHHhc
Confidence 5788999999999999999999 688864
No 258
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=92.80 E-value=0.073 Score=51.57 Aligned_cols=45 Identities=13% Similarity=0.276 Sum_probs=29.9
Q ss_pred ccccccccCCcceeeecCCCCCccHHHHHHHHHhcC-CCeEEEEEEe
Q psy2894 153 IDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKN-KNVTCIYVAI 198 (515)
Q Consensus 153 ID~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~-~~~~~V~~~i 198 (515)
+..++....+.-+.|.|++|||||+++ ..++++.. .+..++|+-+
T Consensus 29 l~~~~~~~~~~~lll~G~~G~GKT~la-~~~~~~~~~~~~~~~~i~~ 74 (226)
T TIGR03420 29 LRQLAAGKGDRFLYLWGESGSGKSHLL-QAACAAAEERGKSAIYLPL 74 (226)
T ss_pred HHHHHhcCCCCeEEEECCCCCCHHHHH-HHHHHHHHhcCCcEEEEeH
Confidence 333333456778999999999999995 67776532 2334566554
No 259
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=92.80 E-value=0.07 Score=52.51 Aligned_cols=29 Identities=28% Similarity=0.505 Sum_probs=25.8
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|...
T Consensus 6 ~~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 34 (230)
T TIGR01184 6 LTIQQGEFISLIGHSGCGKSTL-LNLISGL 34 (230)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 5678999999999999999999 6888765
No 260
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.80 E-value=0.069 Score=53.75 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=25.7
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+-+|+..+|+|++|+||||| +.+|+..
T Consensus 42 l~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 70 (268)
T PRK14248 42 MDIEKHAVTALIGPSGCGKSTF-LRSINRM 70 (268)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHHhc
Confidence 5778999999999999999999 6888763
No 261
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=92.78 E-value=0.071 Score=52.01 Aligned_cols=29 Identities=21% Similarity=0.479 Sum_probs=25.8
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.|.+|+..+|+|+.|+||||| +.+|+..
T Consensus 35 ~~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 63 (226)
T cd03248 35 FTLHPGEVTALVGPSGSGKSTV-VALLENF 63 (226)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhcC
Confidence 5788999999999999999999 6888764
No 262
>PRK08939 primosomal protein DnaI; Reviewed
Probab=92.78 E-value=0.21 Score=51.88 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=33.8
Q ss_pred ccccccccccCCcceeeecCCCCCccHHHHHHHHHhc-CCCeEEEEEEecCChHHHHHHHHHHh
Q psy2894 151 KAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQK-NKNVTCIYVAIGQKISSIKKTANLLE 213 (515)
Q Consensus 151 k~ID~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~-~~~~~~V~~~iGer~~ev~~~~~~l~ 213 (515)
..++.+.+-..++-+.|.|++|||||+|+ ..|+|.. ..+..|.|+-. .+|++++.
T Consensus 145 ~fi~~~~~~~~~~gl~L~G~~G~GKThLa-~Aia~~l~~~g~~v~~~~~-------~~l~~~lk 200 (306)
T PRK08939 145 DFLEAYPPGEKVKGLYLYGDFGVGKSYLL-AAIANELAKKGVSSTLLHF-------PEFIRELK 200 (306)
T ss_pred HHHHHhhccCCCCeEEEECCCCCCHHHHH-HHHHHHHHHcCCCEEEEEH-------HHHHHHHH
Confidence 34444333124566889999999999995 7777753 33444455533 35566654
No 263
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=92.76 E-value=0.069 Score=52.50 Aligned_cols=30 Identities=20% Similarity=0.432 Sum_probs=26.7
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
=+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 23 ~~~i~~Ge~~~l~G~nGsGKSTL-l~~i~G~ 52 (238)
T cd03249 23 SLTIPPGKTVALVGSSGCGKSTV-VSLLERF 52 (238)
T ss_pred EEEecCCCEEEEEeCCCCCHHHH-HHHHhcc
Confidence 35788999999999999999999 6888875
No 264
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=92.74 E-value=0.071 Score=52.35 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=26.3
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.+-+|+..+|+|++|+||||| +.+|+...
T Consensus 7 ~~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~ 36 (230)
T TIGR02770 7 LSLKRGEVLALVGESGSGKSLT-CLAILGLL 36 (230)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhcCC
Confidence 5678999999999999999999 68888753
No 265
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.74 E-value=0.073 Score=52.64 Aligned_cols=28 Identities=29% Similarity=0.551 Sum_probs=24.1
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
+.+.+|+.+.|+||+|+||||| +..|..
T Consensus 23 l~v~~Gevv~iiGpSGSGKSTl-LRclN~ 50 (240)
T COG1126 23 LSVEKGEVVVIIGPSGSGKSTL-LRCLNG 50 (240)
T ss_pred eeEcCCCEEEEECCCCCCHHHH-HHHHHC
Confidence 4789999999999999999999 565544
No 266
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=92.73 E-value=0.075 Score=52.68 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=25.8
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~ 52 (250)
T PRK11264 24 LEVKPGEVVAIIGPSGSGKTTL-LRCINLL 52 (250)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhcC
Confidence 5788999999999999999999 6888764
No 267
>CHL00181 cbbX CbbX; Provisional
Probab=92.73 E-value=0.29 Score=50.24 Aligned_cols=28 Identities=21% Similarity=0.289 Sum_probs=21.3
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
.|..+|-.+++.|+||||||++| ..++.
T Consensus 54 ~~~~~~~~ill~G~pGtGKT~lA-r~la~ 81 (287)
T CHL00181 54 TSSNPGLHMSFTGSPGTGKTTVA-LKMAD 81 (287)
T ss_pred CCCCCCceEEEECCCCCCHHHHH-HHHHH
Confidence 34456778999999999999997 44443
No 268
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=92.72 E-value=0.072 Score=52.52 Aligned_cols=29 Identities=31% Similarity=0.518 Sum_probs=25.9
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|+.-
T Consensus 22 ~~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~ 50 (240)
T PRK09493 22 LNIDQGEVVVIIGPSGSGKSTL-LRCINKL 50 (240)
T ss_pred EEEcCCcEEEEECCCCCCHHHH-HHHHhCC
Confidence 5788999999999999999999 6888764
No 269
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=92.72 E-value=0.92 Score=49.48 Aligned_cols=29 Identities=21% Similarity=0.363 Sum_probs=23.3
Q ss_pred CcceeeecCCCCCccHHHHHHHHHhcCCCe
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQKNKNV 191 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~~~~~~ 191 (515)
+--+++.|++|||||+++ ..+++.....+
T Consensus 217 p~gVLL~GPPGTGKT~LA-raIA~el~~~f 245 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLA-KAVANETSATF 245 (438)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHhhCCCE
Confidence 334999999999999995 88888766554
No 270
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=92.69 E-value=0.067 Score=53.77 Aligned_cols=29 Identities=31% Similarity=0.457 Sum_probs=26.0
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|++.+|+|++|+||||| +.+|...
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~ 56 (265)
T PRK10253 28 VEIPDGHFTAIIGPNGCGKSTL-LRTLSRL 56 (265)
T ss_pred eEECCCCEEEEECCCCCCHHHH-HHHHcCC
Confidence 5788999999999999999999 6888764
No 271
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=92.69 E-value=0.075 Score=50.95 Aligned_cols=30 Identities=20% Similarity=0.416 Sum_probs=26.6
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.+.+|++.+|+|++|+||||| +.+|+...
T Consensus 30 ~~i~~Ge~~~l~G~nGsGKStL-l~~i~Gl~ 59 (194)
T cd03213 30 GKAKPGELTAIMGPSGAGKSTL-LNALAGRR 59 (194)
T ss_pred EEEcCCcEEEEECCCCCCHHHH-HHHHhCCC
Confidence 5788999999999999999999 68888643
No 272
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=92.68 E-value=0.075 Score=51.89 Aligned_cols=30 Identities=23% Similarity=0.550 Sum_probs=26.6
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.+.+|+.++|+|+.|+||||| +.+|+...
T Consensus 31 ~~i~~Ge~~~i~G~nGsGKSTL-l~~i~Gl~ 60 (228)
T PRK10584 31 LVVKRGETIALIGESGSGKSTL-LAILAGLD 60 (228)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHHcCC
Confidence 5788999999999999999999 68888753
No 273
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.67 E-value=0.18 Score=53.19 Aligned_cols=59 Identities=22% Similarity=0.299 Sum_probs=40.9
Q ss_pred ceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEE------ecCChHHHHHHHHHHhhcCCCCcEEEEEe
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVA------IGQKISSIKKTANLLEKYGAMPYTIIVAA 226 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~------iGer~~ev~~~~~~l~~~~~~~~t~vv~~ 226 (515)
-+++-||||||||-|| .+.+|+.++.++-|.+. |||-+|=|+++.+-.+++. =|++|.-
T Consensus 187 GVLLYGPPGTGKTLLA-kAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lAreka---PsIIFiD 251 (406)
T COG1222 187 GVLLYGPPGTGKTLLA-KAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKA---PSIIFID 251 (406)
T ss_pred ceEeeCCCCCcHHHHH-HHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcC---CeEEEEe
Confidence 3789999999999996 99999998887655432 5666666666655544432 3455543
No 274
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=92.66 E-value=0.079 Score=51.27 Aligned_cols=30 Identities=23% Similarity=0.437 Sum_probs=25.9
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
=+++-.|+++.|+|++|+||||| ++.|+-.
T Consensus 19 dl~v~~ge~vAi~GpSGaGKSTL-LnLIAGF 48 (231)
T COG3840 19 DLTVPAGEIVAILGPSGAGKSTL-LNLIAGF 48 (231)
T ss_pred EEeecCCcEEEEECCCCccHHHH-HHHHHhc
Confidence 34677899999999999999999 7888864
No 275
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=92.65 E-value=0.35 Score=51.06 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=23.0
Q ss_pred cceeeecCCCCCccHHHHHHHHHhcCCCe
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQKNKNV 191 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~~~~~~ 191 (515)
..+++.|++|||||+++ ..++++.+..+
T Consensus 157 ~gvLL~GppGtGKT~la-kaia~~l~~~~ 184 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLA-KAVAHETNATF 184 (364)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHhCCCCE
Confidence 34999999999999995 88888766554
No 276
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=92.64 E-value=0.075 Score=53.55 Aligned_cols=29 Identities=21% Similarity=0.332 Sum_probs=26.0
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 41 l~i~~Ge~~~I~G~nGsGKSTL-l~~l~Gl 69 (267)
T PRK14237 41 MQFEKNKITALIGPSGSGKSTY-LRSLNRM 69 (267)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHHhc
Confidence 5788999999999999999999 6888764
No 277
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=92.63 E-value=0.075 Score=52.24 Aligned_cols=30 Identities=27% Similarity=0.378 Sum_probs=26.3
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
=+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 51 (237)
T cd03252 22 SLRIKPGEVVGIVGRSGSGKSTL-TKLIQRF 51 (237)
T ss_pred EEEEcCCCEEEEECCCCCCHHHH-HHHHhcC
Confidence 35788999999999999999999 6888764
No 278
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.63 E-value=0.076 Score=52.58 Aligned_cols=31 Identities=29% Similarity=0.369 Sum_probs=26.8
Q ss_pred ccccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 155 SIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 155 ~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.=+.+.+|+.++|+|++|+||||| +.+|+..
T Consensus 22 vsl~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 52 (241)
T PRK14250 22 ISVKFEGGAIYTIVGPSGAGKSTL-IKLINRL 52 (241)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 346788999999999999999999 6888764
No 279
>PRK09087 hypothetical protein; Validated
Probab=92.63 E-value=0.31 Score=48.26 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=19.6
Q ss_pred CcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+..+.|.|++|+|||+| +..+.+..
T Consensus 44 ~~~l~l~G~~GsGKThL-l~~~~~~~ 68 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHL-ASIWREKS 68 (226)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHhc
Confidence 33489999999999999 47666543
No 280
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=92.62 E-value=0.077 Score=51.73 Aligned_cols=29 Identities=21% Similarity=0.386 Sum_probs=25.6
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+-+|+..+|+|++|+||||| +..|+..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~ 49 (223)
T TIGR03740 21 LTVPKNSVYGLLGPNGAGKSTL-LKMITGI 49 (223)
T ss_pred EEEcCCcEEEEECCCCCCHHHH-HHHHhCC
Confidence 5678999999999999999999 6887764
No 281
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.61 E-value=0.074 Score=53.70 Aligned_cols=29 Identities=31% Similarity=0.511 Sum_probs=26.1
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 30 l~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl 58 (271)
T PRK13632 30 FEINEGEYVAILGHNGSGKSTI-SKILTGL 58 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhcC
Confidence 5788999999999999999999 6888765
No 282
>KOG0057|consensus
Probab=92.59 E-value=0.11 Score=57.34 Aligned_cols=35 Identities=26% Similarity=0.557 Sum_probs=29.7
Q ss_pred ccccc-ccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 152 AIDSI-VPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 152 ~ID~l-~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++++ ++|.+|.+++|+|++|+||||+ +.++.+--
T Consensus 367 iL~gvsf~I~kGekVaIvG~nGsGKSTi-lr~LlrF~ 402 (591)
T KOG0057|consen 367 VLKGVSFTIPKGEKVAIVGSNGSGKSTI-LRLLLRFF 402 (591)
T ss_pred eecceeEEecCCCEEEEECCCCCCHHHH-HHHHHHHh
Confidence 44444 4899999999999999999999 79999854
No 283
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=92.58 E-value=0.08 Score=51.87 Aligned_cols=29 Identities=28% Similarity=0.518 Sum_probs=25.7
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +..|+..
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~ 56 (225)
T PRK10247 28 FSLRAGEFKLITGPSGCGKSTL-LKIVASL 56 (225)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhcc
Confidence 5788999999999999999999 6887764
No 284
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=92.58 E-value=0.081 Score=46.02 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=18.8
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++|.|++|+||||++ ..++.+-
T Consensus 1 vI~I~G~~gsGKST~a-~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA-KELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHH-HHHHHHH
T ss_pred CEEEECCCCCCHHHHH-HHHHHHH
Confidence 4789999999999996 6666543
No 285
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.58 E-value=0.078 Score=52.70 Aligned_cols=29 Identities=24% Similarity=0.403 Sum_probs=25.8
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~ 53 (251)
T PRK14270 25 LPIYENKITALIGPSGCGKSTF-LRCLNRM 53 (251)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHHhc
Confidence 5678999999999999999999 6888864
No 286
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.58 E-value=0.91 Score=48.50 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=31.6
Q ss_pred cccccccccccccc-ccccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 143 SEPLQTGIKAIDSI-VPIGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 143 ~epl~TGik~ID~l-~pigrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
.+.+..-+.+++.. ..+.+|+-++++|++|+||||++ ..++.
T Consensus 117 ~~~l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTti-akLA~ 159 (374)
T PRK14722 117 QSVLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTT-AKLAA 159 (374)
T ss_pred HHHHHhcchhhcCCCccccCCcEEEEECCCCCCHHHHH-HHHHH
Confidence 34566666777665 34778999999999999999995 55554
No 287
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=92.57 E-value=0.084 Score=49.36 Aligned_cols=29 Identities=38% Similarity=0.502 Sum_probs=26.0
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|++.+|+|++|+||||| +.+|...
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~ 50 (166)
T cd03223 22 FEIKPGDRLLITGPSGTGKSSL-FRALAGL 50 (166)
T ss_pred EEECCCCEEEEECCCCCCHHHH-HHHHhcC
Confidence 5788999999999999999999 6888765
No 288
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.57 E-value=0.55 Score=52.58 Aligned_cols=110 Identities=16% Similarity=0.255 Sum_probs=51.9
Q ss_pred cCCcc-eeeecCCCCCccHHHHHHHHHhcC--CCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhH
Q psy2894 160 GKGQR-ELIIGDRQTGKSSIAIDIIINQKN--KNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQF 236 (515)
Q Consensus 160 grGqr-~~I~g~~g~GKt~l~~~~i~~~~~--~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~ 236 (515)
++... .++.|++|+|||++| ..+++.-. .+..- -.||.- .....+......+ .+.+ ..++..-....
T Consensus 35 ~rl~ha~Lf~Gp~GvGKTTlA-r~lAk~L~c~~~~~~--~pCg~C-----~sC~~i~~~~~~d-liei-daas~~gvd~i 104 (546)
T PRK14957 35 QKVHHAYLFTGTRGVGKTTLG-RLLAKCLNCKTGVTA--EPCNKC-----ENCVAINNNSFID-LIEI-DAASRTGVEET 104 (546)
T ss_pred CCCCeEEEEECCCCCCHHHHH-HHHHHHhCCCCCCCC--CCCccc-----HHHHHHhcCCCCc-eEEe-ecccccCHHHH
Confidence 44444 578899999999996 55555321 11000 012211 1122222222222 2222 22122222333
Q ss_pred HHHhhhhhhHHHHHHcCCcEEEEEechhHHHH-HHHHHHHhcCCCCC
Q psy2894 237 ISAYSGCTIGEYFRDHGKDALVVYDDLSKQAV-AYRQISLLLKRPPG 282 (515)
Q Consensus 237 ~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~-A~reisl~l~~pp~ 282 (515)
+... .-+++....|+..++|+|+.-++.. |.+.+-..+.+||.
T Consensus 105 r~ii---~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~ 148 (546)
T PRK14957 105 KEIL---DNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPE 148 (546)
T ss_pred HHHH---HHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCC
Confidence 2222 1223333457788899998766654 44444445666653
No 289
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=92.57 E-value=0.078 Score=52.56 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=26.1
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
=+.|.+|+..+|+|++|+||||| +.+|+..
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~ 50 (247)
T TIGR00972 21 NLDIPKNQVTALIGPSGCGKSTL-LRSLNRM 50 (247)
T ss_pred eEEECCCCEEEEECCCCCCHHHH-HHHHhcc
Confidence 35788999999999999999999 6888754
No 290
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.51 E-value=0.081 Score=52.46 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=26.0
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.|.+|+..+|+|++|+||||| +.+|...
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 52 (249)
T PRK14253 24 LPIPARQVTALIGPSGCGKSTL-LRCLNRM 52 (249)
T ss_pred EEecCCCEEEEECCCCCCHHHH-HHHHHhh
Confidence 5788999999999999999999 6888764
No 291
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=92.50 E-value=0.08 Score=49.84 Aligned_cols=31 Identities=16% Similarity=0.498 Sum_probs=26.7
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
=+.+-+|+..+|+|+.|+||||| +.+|+...
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStL-l~~l~G~~ 52 (178)
T cd03247 22 SLELKQGEKIALLGRSGSGKSTL-LQLLTGDL 52 (178)
T ss_pred EEEEcCCCEEEEECCCCCCHHHH-HHHHhccC
Confidence 35777999999999999999999 68888753
No 292
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.50 E-value=0.08 Score=52.65 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=25.7
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.|-+|+..+|+|++|+||||| +.+|+.-
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 53 (252)
T PRK14256 25 MDFPENSVTAIIGPSGCGKSTV-LRSINRM 53 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHHhc
Confidence 4788999999999999999999 6888764
No 293
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=92.49 E-value=0.079 Score=52.86 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=26.3
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
=+.+.+|+..+|+|++|+||||| +.+|...
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl 52 (254)
T PRK10418 23 SLTLQRGRVLALVGGSGSGKSLT-CAAALGI 52 (254)
T ss_pred EEEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 36889999999999999999999 6887764
No 294
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=92.49 E-value=0.074 Score=53.46 Aligned_cols=29 Identities=21% Similarity=0.449 Sum_probs=25.7
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+.++|+|++|+||||| +.+|...
T Consensus 32 ~~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 60 (265)
T PRK10575 32 LTFPAGKVTGLIGHNGSGKSTL-LKMLGRH 60 (265)
T ss_pred eEEcCCCEEEEECCCCCCHHHH-HHHHcCC
Confidence 5788999999999999999999 6887764
No 295
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.48 E-value=0.082 Score=52.46 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=25.8
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.|.+|+..+|+|++|+||||| +.+|+..
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~ 53 (252)
T PRK14272 25 LDVQRGTVNALIGPSGCGKTTF-LRAINRM 53 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhcc
Confidence 5788999999999999999999 6888764
No 296
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.47 E-value=0.52 Score=53.77 Aligned_cols=107 Identities=20% Similarity=0.223 Sum_probs=52.5
Q ss_pred cceeeecCCCCCccHHHHHHHHHhcCC--CeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHh
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQKNK--NVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAY 240 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~~~~--~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~ 240 (515)
+-.++.|++|+|||++| ..+++.-+. .... ..||+- .....+......+ -+-+ ..++..-....+...
T Consensus 38 HAyLF~GPpGvGKTTlA-riLAK~LnC~~~~~~--~pCg~C-----~sC~~I~~g~hpD-viEI-DAAs~~~VddIReli 107 (702)
T PRK14960 38 HAYLFTGTRGVGKTTIA-RILAKCLNCETGVTS--TPCEVC-----ATCKAVNEGRFID-LIEI-DAASRTKVEDTRELL 107 (702)
T ss_pred eEEEEECCCCCCHHHHH-HHHHHHhCCCcCCCC--CCCccC-----HHHHHHhcCCCCc-eEEe-cccccCCHHHHHHHH
Confidence 34589999999999996 445543211 1000 122321 2233333322222 1222 222222233333221
Q ss_pred hhhhhHHHHHHcCCcEEEEEechhHHH-HHHHHHHHhcCCCCC
Q psy2894 241 SGCTIGEYFRDHGKDALVVYDDLSKQA-VAYRQISLLLKRPPG 282 (515)
Q Consensus 241 ~a~~iAE~frd~G~~Vlli~Dsltr~a-~A~reisl~l~~pp~ 282 (515)
.-+.|..-.|+.-++|+|+.-++- .+.+.+-..+.+||.
T Consensus 108 ---~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~ 147 (702)
T PRK14960 108 ---DNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPE 147 (702)
T ss_pred ---HHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 223333345777888899877763 455555556667664
No 297
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=92.47 E-value=0.083 Score=50.56 Aligned_cols=30 Identities=17% Similarity=0.385 Sum_probs=26.0
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
=+.+.+|+..+|+|+.|+||||| +.+|...
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~ 49 (198)
T TIGR01189 20 SFTLNAGEALQVTGPNGIGKTTL-LRILAGL 49 (198)
T ss_pred eEEEcCCcEEEEECCCCCCHHHH-HHHHhCC
Confidence 34788999999999999999999 6887764
No 298
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.46 E-value=0.085 Score=52.53 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=26.0
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.|.+|+..+|+|++|+||||| +.+|+..
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 56 (254)
T PRK14273 28 IKILKNSITALIGPSGCGKSTF-LRTLNRM 56 (254)
T ss_pred eEEcCCCEEEEECCCCCCHHHH-HHHHhcc
Confidence 5788999999999999999999 6888764
No 299
>CHL00195 ycf46 Ycf46; Provisional
Probab=92.42 E-value=0.46 Score=52.48 Aligned_cols=60 Identities=25% Similarity=0.295 Sum_probs=39.0
Q ss_pred ceeeecCCCCCccHHHHHHHHHhcCCCeEEEEE------EecCChHHHHHHHHHHhhcCCCCcEEEEEeC
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQKNKNVTCIYV------AIGQKISSIKKTANLLEKYGAMPYTIIVAAT 227 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~------~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t 227 (515)
-+++.|++|||||.+| ..|++..+..++.+-+ .+|+....+.++.+... .+..++++.--
T Consensus 261 GILL~GPpGTGKTllA-kaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~---~~~P~IL~IDE 326 (489)
T CHL00195 261 GLLLVGIQGTGKSLTA-KAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAE---ALSPCILWIDE 326 (489)
T ss_pred eEEEECCCCCcHHHHH-HHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHH---hcCCcEEEehh
Confidence 3899999999999996 8888877665433221 24665555655555433 34566665543
No 300
>PF14516 AAA_35: AAA-like domain
Probab=92.42 E-value=0.17 Score=52.99 Aligned_cols=146 Identities=18% Similarity=0.266 Sum_probs=81.3
Q ss_pred ccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChH----
Q psy2894 128 PIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKIS---- 203 (515)
Q Consensus 128 ~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~---- 203 (515)
++....|-..+|.++.+-+...|. -+|+-+.|.||+++|||+|+...+..-+..+..|||+-+-.-++
T Consensus 5 ~~~~~~~~Yi~R~~~e~~~~~~i~--------~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~ 76 (331)
T PF14516_consen 5 PLPLDSPFYIERPPAEQECYQEIV--------QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFS 76 (331)
T ss_pred CCCCCCCcccCchHHHHHHHHHHh--------cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccC
Confidence 344445666777766665555442 24999999999999999996444444445688899988776433
Q ss_pred HHHHHHHHHhhc--CCCCcEEEEEeCCCCCHHhhHH-HHhhhhh----hHHHHHH-cCCcEEEEEechhHHHHHHHHHHH
Q psy2894 204 SIKKTANLLEKY--GAMPYTIIVAATASDSASMQFI-SAYSGCT----IGEYFRD-HGKDALVVYDDLSKQAVAYRQISL 275 (515)
Q Consensus 204 ev~~~~~~l~~~--~~~~~t~vv~~t~~~~~~~r~~-a~~~a~~----iAE~frd-~G~~Vlli~Dsltr~a~A~reisl 275 (515)
...+|++.+-.. ..++- +......+. ..-.-.. +-|++-. ..+.+++++|.+-+.
T Consensus 77 ~~~~f~~~~~~~i~~~L~l--------~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l--------- 139 (331)
T PF14516_consen 77 DLEQFLRWFCEEISRQLKL--------DEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRL--------- 139 (331)
T ss_pred CHHHHHHHHHHHHHHHcCC--------ChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhh---------
Confidence 445555443210 00110 011111111 0001112 2233333 368999999986553
Q ss_pred hcCCCCCCCCCCCchhhhhhHHHHHhhc
Q psy2894 276 LLKRPPGREAYPGDIFYLHSRLLERSAR 303 (515)
Q Consensus 276 ~l~~pp~~~gypg~vf~~~~rl~ERag~ 303 (515)
++.| .+-.+.|.++..++|++..
T Consensus 140 -~~~~----~~~~dF~~~LR~~~~~~~~ 162 (331)
T PF14516_consen 140 -FEYP----QIADDFFGLLRSWYEQRKN 162 (331)
T ss_pred -ccCc----chHHHHHHHHHHHHHhccc
Confidence 2211 1124678888889986653
No 301
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.39 E-value=0.084 Score=52.45 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=25.7
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 26 ~~i~~Ge~~~I~G~nGsGKSTL-l~~i~G~ 54 (251)
T PRK14244 26 LDIYKREVTAFIGPSGCGKSTF-LRCFNRM 54 (251)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHHhh
Confidence 5788999999999999999999 6887754
No 302
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.39 E-value=0.085 Score=54.74 Aligned_cols=35 Identities=34% Similarity=0.587 Sum_probs=30.1
Q ss_pred cccccccc-cccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 150 IKAIDSIV-PIGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 150 ik~ID~l~-pigrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
+++||.+. .+.+|+..+|+|.+|+|||+++ .+|..
T Consensus 18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~-~aim~ 53 (316)
T COG0444 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLA-KAIMG 53 (316)
T ss_pred EEEEeceeEEEcCCcEEEEEcCCCCCHHHHH-HHHHh
Confidence 68888875 9999999999999999999996 44444
No 303
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=92.38 E-value=0.08 Score=53.41 Aligned_cols=31 Identities=23% Similarity=0.442 Sum_probs=27.1
Q ss_pred ccccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 155 SIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 155 ~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.=+.+.+|+.++|+|++|+||||| +.+|+..
T Consensus 26 vsl~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 56 (269)
T PRK11831 26 ISLTVPRGKITAIMGPSGIGKTTL-LRLIGGQ 56 (269)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 346889999999999999999999 6888865
No 304
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.37 E-value=0.08 Score=53.99 Aligned_cols=29 Identities=24% Similarity=0.420 Sum_probs=26.2
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 32 ~~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl 60 (289)
T PRK13645 32 LTFKKNKVTCVIGTTGSGKSTM-IQLTNGL 60 (289)
T ss_pred EEEeCCCEEEEECCCCCCHHHH-HHHHhcC
Confidence 5788999999999999999999 6888765
No 305
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=92.37 E-value=0.083 Score=54.34 Aligned_cols=29 Identities=24% Similarity=0.466 Sum_probs=26.1
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+-+|+..+|+|+.|+||||| +.+|...
T Consensus 25 l~i~~Ge~~~l~G~NGaGKSTL-l~~l~Gl 53 (303)
T TIGR01288 25 FTIARGECFGLLGPNGAGKSTI-ARMLLGM 53 (303)
T ss_pred EEEcCCcEEEEECCCCCCHHHH-HHHHhCC
Confidence 5788999999999999999999 6888764
No 306
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=92.36 E-value=0.084 Score=52.88 Aligned_cols=29 Identities=17% Similarity=0.487 Sum_probs=26.1
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.|.+|+..+|+|++|+||||| +.+|+..
T Consensus 25 ~~i~~Ge~~~I~G~NGsGKSTL-l~~i~Gl 53 (251)
T PRK09544 25 LELKPGKILTLLGPNGAGKSTL-VRVVLGL 53 (251)
T ss_pred EEEcCCcEEEEECCCCCCHHHH-HHHHhCC
Confidence 6788999999999999999999 6888864
No 307
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=92.36 E-value=0.085 Score=53.32 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=26.1
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.|.+|++++|+|++|+||||| +.+|+..
T Consensus 45 l~i~~Ge~~~I~G~nGsGKSTL-l~~i~Gl 73 (271)
T PRK14238 45 LDIHENEVTAIIGPSGCGKSTY-IKTLNRM 73 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHHhh
Confidence 5788999999999999999999 6888864
No 308
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=92.36 E-value=0.08 Score=52.62 Aligned_cols=29 Identities=14% Similarity=0.341 Sum_probs=25.9
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl 54 (255)
T PRK11300 26 LEVREQEIVSLIGPNGAGKTTV-FNCLTGF 54 (255)
T ss_pred eEEcCCeEEEEECCCCCCHHHH-HHHHhCC
Confidence 5788999999999999999999 6888764
No 309
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=92.34 E-value=0.089 Score=51.24 Aligned_cols=29 Identities=17% Similarity=0.399 Sum_probs=26.1
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|...
T Consensus 29 ~~i~~Ge~~~l~G~nGsGKSTL-l~~i~G~ 57 (224)
T TIGR02324 29 LTVNAGECVALSGPSGAGKSTL-LKSLYAN 57 (224)
T ss_pred EEECCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 6888999999999999999999 6888764
No 310
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=92.34 E-value=0.078 Score=52.17 Aligned_cols=29 Identities=21% Similarity=0.497 Sum_probs=25.9
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.|.+|+..+|+|++|+||||| +.+|+..
T Consensus 26 ~~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~ 54 (237)
T PRK11614 26 LHINQGEIVTLIGANGAGKTTL-LGTLCGD 54 (237)
T ss_pred EEEcCCcEEEEECCCCCCHHHH-HHHHcCC
Confidence 5788999999999999999999 6888764
No 311
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=92.33 E-value=0.67 Score=44.91 Aligned_cols=44 Identities=14% Similarity=0.251 Sum_probs=24.1
Q ss_pred ceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEec-CChHHHHH
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIG-QKISSIKK 207 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iG-er~~ev~~ 207 (515)
-+.++|+.|+||||.+...-+..+..+-.+-++.++ .|.--+.+
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQ 47 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQ 47 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHH
Confidence 367999999999999633322222124334445555 44444433
No 312
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.33 E-value=0.086 Score=52.28 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=26.2
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
=+.|.+|+..+|+|++|+||||| +.+|+..
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 52 (250)
T PRK14266 23 NLDIPKNSVTALIGPSGCGKSTF-IRTLNRM 52 (250)
T ss_pred EEEEcCCCEEEEECCCCCCHHHH-HHHHHhh
Confidence 35788999999999999999999 6888753
No 313
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.32 E-value=0.082 Score=53.53 Aligned_cols=29 Identities=28% Similarity=0.508 Sum_probs=25.9
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+-+|+..+|+|++|+||||| +.+|+..
T Consensus 28 ~~i~~Ge~~~l~G~nGsGKSTL-l~~i~Gl 56 (280)
T PRK13649 28 LTIEDGSYTAFIGHTGSGKSTI-MQLLNGL 56 (280)
T ss_pred EEEcCCcEEEEECCCCCCHHHH-HHHHhCC
Confidence 5788999999999999999999 6888764
No 314
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=92.31 E-value=0.095 Score=51.31 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=24.7
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.+-+|+.++|+|++|+||||| +.+|+..
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~ 29 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTL-LRAILGL 29 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHH-HHHHhCC
Confidence 467899999999999999999 6888764
No 315
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.31 E-value=0.077 Score=51.18 Aligned_cols=29 Identities=21% Similarity=0.425 Sum_probs=25.9
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+-+|+..+|+|++|+||||| +.+|...
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~ 56 (202)
T cd03233 28 GVVKPGEMVLVLGRPGSGCSTL-LKALANR 56 (202)
T ss_pred EEECCCcEEEEECCCCCCHHHH-HHHhccc
Confidence 5778999999999999999999 6888765
No 316
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=92.28 E-value=0.088 Score=52.32 Aligned_cols=29 Identities=21% Similarity=0.408 Sum_probs=25.9
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+-+|++.+|+|++|+||||| +.+|...
T Consensus 24 l~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~ 52 (253)
T TIGR02323 24 FDLYPGEVLGIVGESGSGKSTL-LGCLAGR 52 (253)
T ss_pred EEEeCCcEEEEECCCCCCHHHH-HHHHhCC
Confidence 6788999999999999999999 6887765
No 317
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=92.27 E-value=0.085 Score=53.31 Aligned_cols=31 Identities=16% Similarity=0.363 Sum_probs=27.0
Q ss_pred ccccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 155 SIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 155 ~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.=+.+.+|+.++|+|++|+||||| +.+|...
T Consensus 26 vsl~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl 56 (272)
T PRK15056 26 ASFTVPGGSIAALVGVNGSGKSTL-FKALMGF 56 (272)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 335888999999999999999999 6888765
No 318
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.25 E-value=0.09 Score=52.18 Aligned_cols=29 Identities=17% Similarity=0.298 Sum_probs=25.8
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.|.+|+.++|+|++|+||||| +..|...
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 53 (251)
T PRK14251 25 LDFEEKELTALIGPSGCGKSTF-LRCLNRM 53 (251)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhhc
Confidence 5788999999999999999999 6888764
No 319
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=92.23 E-value=0.089 Score=52.99 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=26.4
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
=+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 32 sl~i~~Ge~~~I~G~NGsGKSTL-lk~l~Gl 61 (257)
T PRK11247 32 DLHIPAGQFVAVVGRSGCGKSTL-LRLLAGL 61 (257)
T ss_pred EEEEcCCCEEEEECCCCCCHHHH-HHHHhcC
Confidence 35788999999999999999999 6888764
No 320
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=92.22 E-value=0.09 Score=51.94 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=26.0
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|+.|+||||| +.+|+..
T Consensus 42 ~~i~~Ge~~~i~G~NGsGKSTL-l~~i~Gl 70 (236)
T cd03267 42 FTIEKGEIVGFIGPNGAGKTTT-LKILSGL 70 (236)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 5778999999999999999999 6888864
No 321
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.21 E-value=0.09 Score=52.59 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=25.9
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.|-+|+.++|+|++|+||||| +.+|...
T Consensus 33 ~~i~~Ge~~~i~G~nGsGKSTL-l~~i~Gl 61 (258)
T PRK14268 33 MQIPKNSVTALIGPSGCGKSTF-IRCLNRM 61 (258)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhcC
Confidence 5788999999999999999999 6888764
No 322
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=92.21 E-value=0.084 Score=52.38 Aligned_cols=29 Identities=31% Similarity=0.587 Sum_probs=25.6
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTL-l~~i~Gl 56 (252)
T CHL00131 28 LSINKGEIHAIMGPNGSGKSTL-SKVIAGH 56 (252)
T ss_pred eEEcCCcEEEEECCCCCCHHHH-HHHHcCC
Confidence 5788999999999999999999 6887763
No 323
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=92.20 E-value=0.13 Score=48.48 Aligned_cols=29 Identities=24% Similarity=0.426 Sum_probs=25.7
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+-+|+..+|.|++|+||||| +.+|...
T Consensus 20 ~~i~~G~~~~l~G~nGsGKStL-l~~i~G~ 48 (180)
T cd03214 20 LSIEAGEIVGILGPNGAGKSTL-LKTLAGL 48 (180)
T ss_pred EEECCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 4678999999999999999999 6888764
No 324
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.20 E-value=0.24 Score=50.54 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=21.2
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
-.|+-+++.|++|+|||+++ ...++.-
T Consensus 31 ~~~~pvLl~G~~GtGKT~li-~~~l~~l 57 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKTSLI-QNFLSSL 57 (272)
T ss_dssp HCTEEEEEESSTTSSHHHHH-HHHHHCS
T ss_pred HcCCcEEEECCCCCchhHHH-HhhhccC
Confidence 45889999999999999995 4444443
No 325
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=92.20 E-value=0.094 Score=52.58 Aligned_cols=32 Identities=38% Similarity=0.517 Sum_probs=26.8
Q ss_pred cccccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 154 DSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 154 D~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
|.=+.+-+|+++||+|..|+||||| +..|+.-
T Consensus 45 disf~i~~Ge~vGiiG~NGaGKSTL-lkliaGi 76 (249)
T COG1134 45 DISFEIYKGERVGIIGHNGAGKSTL-LKLIAGI 76 (249)
T ss_pred CceEEEeCCCEEEEECCCCCcHHHH-HHHHhCc
Confidence 3346899999999999999999999 5777653
No 326
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=92.17 E-value=0.091 Score=52.64 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=26.0
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.+-+|+..+|+|++|+||||| +.+|+...
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~~ 54 (262)
T PRK09984 25 LNIHHGEMVALLGPSGSGKSTL-LRHLSGLI 54 (262)
T ss_pred EEEcCCcEEEEECCCCCCHHHH-HHHHhccC
Confidence 4678999999999999999999 68887643
No 327
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=92.17 E-value=1.3 Score=41.43 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=20.2
Q ss_pred CcceeeecCCCCCccHHHHHHHHHh
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
-=+++|+|++|+|||+| +..+.++
T Consensus 18 ~~~i~ivG~~~~GKStl-in~l~~~ 41 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSL-INALTNR 41 (179)
T ss_pred CCEEEEEcCCCCCHHHH-HHHHhCC
Confidence 34789999999999999 6887765
No 328
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.16 E-value=0.093 Score=52.99 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=25.9
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 45 ~~i~~Ge~~~l~G~nGsGKSTL-l~~L~Gl 73 (269)
T cd03294 45 LDVREGEIFVIMGLSGSGKSTL-LRCINRL 73 (269)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhcC
Confidence 5788999999999999999999 6888764
No 329
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.16 E-value=0.092 Score=52.08 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=26.4
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
=+.+.+|+.++|+|++|+||||| +.+|+..
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 51 (246)
T PRK14269 22 NMQIEQNKITALIGASGCGKSTF-LRCFNRM 51 (246)
T ss_pred EEEEcCCCEEEEECCCCCCHHHH-HHHHhcc
Confidence 36788999999999999999999 6888764
No 330
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.15 E-value=0.89 Score=49.34 Aligned_cols=42 Identities=10% Similarity=0.215 Sum_probs=28.1
Q ss_pred ccCCcceeeecCCCCCccHHHHHHHHHhc--CCCeEEEEEEecC
Q psy2894 159 IGKGQRELIIGDRQTGKSSIAIDIIINQK--NKNVTCIYVAIGQ 200 (515)
Q Consensus 159 igrGqr~~I~g~~g~GKt~l~~~~i~~~~--~~~~~~V~~~iGe 200 (515)
+.+|..++++|+.|+||||++........ ..+..+.++.+..
T Consensus 218 ~~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 218 LKQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 45688999999999999999644433332 3334455566554
No 331
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.14 E-value=0.1 Score=48.94 Aligned_cols=29 Identities=24% Similarity=0.599 Sum_probs=26.3
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+-+|+..+|+|++|+||||| +.+|+..
T Consensus 23 ~~i~~G~~~~l~G~nGsGKstL-l~~i~G~ 51 (171)
T cd03228 23 LTIKPGEKVAIVGPSGSGKSTL-LKLLLRL 51 (171)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHHcC
Confidence 5788999999999999999999 6888875
No 332
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=92.13 E-value=0.098 Score=52.60 Aligned_cols=29 Identities=31% Similarity=0.357 Sum_probs=25.7
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
=+.+.+|+.++|+|++|+||||| +.+|+.
T Consensus 30 sl~i~~Ge~~~i~G~nGsGKSTL-l~~l~G 58 (264)
T PRK14243 30 WLDIPKNQITAFIGPSGCGKSTI-LRCFNR 58 (264)
T ss_pred eEEEcCCCEEEEECCCCCCHHHH-HHHHHh
Confidence 36788999999999999999999 688875
No 333
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=92.12 E-value=0.095 Score=52.34 Aligned_cols=29 Identities=28% Similarity=0.338 Sum_probs=25.9
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+.++|+|++|+||||| +.+|+..
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTL-l~~i~G~ 54 (257)
T PRK10619 26 LQANAGDVISIIGSSGSGKSTF-LRCINFL 54 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 5778999999999999999999 6888765
No 334
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=92.12 E-value=0.092 Score=53.12 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=27.3
Q ss_pred cccccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 154 DSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 154 D~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
|.=+.|.+|++++|+|+.|+||||| +.+|+..
T Consensus 42 ~is~~i~~Ge~~~liG~NGsGKSTL-lk~L~Gl 73 (264)
T PRK13546 42 DISLKAYEGDVIGLVGINGSGKSTL-SNIIGGS 73 (264)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 3445788999999999999999999 6888764
No 335
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=92.10 E-value=0.094 Score=53.91 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=26.3
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|+.|+||||| +.+|...
T Consensus 14 ~~i~~Ge~~~l~G~NGaGKSTL-l~~l~Gl 42 (302)
T TIGR01188 14 FKVREGEVFGFLGPNGAGKTTT-IRMLTTL 42 (302)
T ss_pred EEEcCCcEEEEECCCCCCHHHH-HHHHhCC
Confidence 5888999999999999999999 6888864
No 336
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.08 E-value=0.1 Score=50.32 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=27.1
Q ss_pred cccccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 154 DSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 154 D~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
|.=+.+.+|+..+|+|+.|+||||| +.+|+..
T Consensus 19 ~vs~~i~~Ge~~~l~G~nGsGKSTL-l~~l~G~ 50 (204)
T PRK13538 19 GLSFTLNAGELVQIEGPNGAGKTSL-LRILAGL 50 (204)
T ss_pred cceEEECCCcEEEEECCCCCCHHHH-HHHHhCC
Confidence 3345788999999999999999999 6888764
No 337
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.08 E-value=0.097 Score=52.02 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=25.8
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.|-+|+..+|+|++|+||||| +..|+..
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTL-l~~l~Gl 53 (251)
T PRK14249 25 MDFPERQITAIIGPSGCGKSTL-LRALNRM 53 (251)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhcc
Confidence 4788999999999999999999 6888764
No 338
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=92.07 E-value=0.87 Score=44.12 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=19.3
Q ss_pred CCcceeeecCCCCCccHHHHHHHH
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIII 184 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~ 184 (515)
.|.-++|.|+.|+||||+ +.+|.
T Consensus 24 ~g~~~~ltGpNg~GKSTl-lr~i~ 46 (199)
T cd03283 24 KKNGILITGSNMSGKSTF-LRTIG 46 (199)
T ss_pred CCcEEEEECCCCCChHHH-HHHHH
Confidence 367889999999999999 56664
No 339
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=92.07 E-value=0.094 Score=52.56 Aligned_cols=29 Identities=21% Similarity=0.461 Sum_probs=25.9
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+-+|+..+|+|++|+||||| +.+|+..
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~ 51 (258)
T PRK13548 23 LTLRPGEVVAILGPNGAGKSTL-LRALSGE 51 (258)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 5788999999999999999999 6888764
No 340
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.05 E-value=0.091 Score=53.02 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=25.8
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 50 (271)
T PRK13638 22 LDFSLSPVTGLVGANGCGKSTL-FMNLSGL 50 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHcCC
Confidence 5788999999999999999999 6887764
No 341
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=92.03 E-value=0.1 Score=52.50 Aligned_cols=31 Identities=19% Similarity=0.412 Sum_probs=27.0
Q ss_pred ccccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 155 SIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 155 ~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.=+.+.+|+.++|+|++|+||||| +.+|+..
T Consensus 30 isl~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 60 (265)
T TIGR02769 30 VSLSIEEGETVGLLGRSGCGKSTL-ARLLLGL 60 (265)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 336889999999999999999999 6888765
No 342
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=92.03 E-value=0.24 Score=52.96 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=25.7
Q ss_pred CcceeeecCCCCCccHHHHHHHHHh---cCCCeEEEEEE
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQ---KNKNVTCIYVA 197 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~---~~~~~~~V~~~ 197 (515)
+..+.|.|++|+|||+|+ ..|.+. +..+..++|+-
T Consensus 136 ~n~l~l~G~~G~GKThL~-~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLL-HAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHHHHhCCCCcEEEEE
Confidence 446789999999999995 777764 23355667774
No 343
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.03 E-value=0.098 Score=52.37 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=26.2
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+-+|+.++|+|++|+||||| +.+|+..
T Consensus 28 l~i~~Ge~~~l~G~nGsGKSTL-lk~l~Gl 56 (259)
T PRK14260 28 MDIYRNKVTAIIGPSGCGKSTF-IKTLNRI 56 (259)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHHhh
Confidence 6788999999999999999999 6888864
No 344
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.01 E-value=0.099 Score=51.27 Aligned_cols=30 Identities=27% Similarity=0.509 Sum_probs=26.4
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
=+.|-+|+..+|+|+.|+||||| +.+|+..
T Consensus 21 ~~~i~~Ge~~~l~G~nGsGKSTL-l~~i~Gl 50 (236)
T cd03253 21 SFTIPAGKKVAIVGPSGSGKSTI-LRLLFRF 50 (236)
T ss_pred EEEEcCCCEEEEECCCCCCHHHH-HHHHhcc
Confidence 45788999999999999999999 6888865
No 345
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.00 E-value=0.11 Score=52.05 Aligned_cols=28 Identities=21% Similarity=0.383 Sum_probs=24.4
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.+.+|+.++|+|+.|+||||| +.+|+..
T Consensus 21 ~i~~Ge~~~i~G~NGsGKSTL-lk~L~G~ 48 (246)
T cd03237 21 SISESEVIGILGPNGIGKTTF-IKMLAGV 48 (246)
T ss_pred CcCCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 356899999999999999999 6888764
No 346
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.00 E-value=0.1 Score=52.94 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=25.2
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
+.+.+|+..+|+|++|+||||| +.+|+.
T Consensus 41 ~~i~~Ge~~~IiG~nGsGKSTL-l~~l~G 68 (274)
T PRK14265 41 LKIPAKKIIAFIGPSGCGKSTL-LRCFNR 68 (274)
T ss_pred eEEcCCCEEEEECCCCCCHHHH-HHHHhc
Confidence 5788999999999999999999 688774
No 347
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=92.00 E-value=0.31 Score=45.83 Aligned_cols=86 Identities=17% Similarity=0.224 Sum_probs=50.4
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHh-cCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHH
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQ-KNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISA 239 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~-~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~ 239 (515)
||--+-|.|-+|+|||||| ..+... ...+. -+|++=|. .+.. + +. +.-.-+...|....
T Consensus 1 ~g~vIwltGlsGsGKtTlA-~~L~~~L~~~g~-~~~~LDgD----------~lR~-~-l~------~dl~fs~~dR~e~~ 60 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLA-RALERRLFARGI-KVYLLDGD----------NLRH-G-LN------ADLGFSKEDREENI 60 (156)
T ss_dssp S-EEEEEESSTTSSHHHHH-HHHHHHHHHTTS--EEEEEHH----------HHCT-T-TT------TT--SSHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH-HHHHHHHHHcCC-cEEEecCc----------chhh-c-cC------CCCCCCHHHHHHHH
Confidence 4667889999999999997 333322 23333 35566662 2221 1 11 11123445677777
Q ss_pred hhhhhhHHHHHHcCCcEEEEEechhHH
Q psy2894 240 YSGCTIGEYFRDHGKDALVVYDDLSKQ 266 (515)
Q Consensus 240 ~~a~~iAE~frd~G~~Vlli~Dsltr~ 266 (515)
.....+|..|.++|..|++=.-+.++-
T Consensus 61 rr~~~~A~ll~~~G~ivIva~isp~~~ 87 (156)
T PF01583_consen 61 RRIAEVAKLLADQGIIVIVAFISPYRE 87 (156)
T ss_dssp HHHHHHHHHHHHTTSEEEEE----SHH
T ss_pred HHHHHHHHHHHhCCCeEEEeeccCchH
Confidence 777888999999999888887777753
No 348
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=91.99 E-value=0.1 Score=51.93 Aligned_cols=35 Identities=26% Similarity=0.502 Sum_probs=28.0
Q ss_pred cccc-cccccccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 150 IKAI-DSIVPIGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 150 ik~I-D~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
+.++ |.=+.|-+|.-+.|.||+|+||||| |..|..
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTL-Lniig~ 53 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTL-LNLLGG 53 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHH-HHHHhc
Confidence 3455 3345899999999999999999999 577654
No 349
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=91.98 E-value=0.1 Score=52.58 Aligned_cols=29 Identities=21% Similarity=0.286 Sum_probs=25.8
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.|-+|+..+|+|++|+||||| +.+|...
T Consensus 40 l~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 68 (267)
T PRK14235 40 LDIPEKTVTAFIGPSGCGKSTF-LRCLNRM 68 (267)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHHhh
Confidence 5778999999999999999999 6888764
No 350
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.98 E-value=0.099 Score=49.98 Aligned_cols=28 Identities=18% Similarity=0.485 Sum_probs=25.2
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
+.+-+|+.++|+|++|+||||| +.+|..
T Consensus 28 ~~i~~Ge~~~l~G~nGsGKSTL-l~~l~G 55 (192)
T cd03232 28 GYVKPGTLTALMGESGAGKTTL-LDVLAG 55 (192)
T ss_pred EEEeCCcEEEEECCCCCCHHHH-HHHHhC
Confidence 4788999999999999999999 688875
No 351
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=91.97 E-value=0.11 Score=44.73 Aligned_cols=24 Identities=25% Similarity=0.482 Sum_probs=20.1
Q ss_pred ceeeecCCCCCccHHHHHHHHHhcC
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQKN 188 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~~ 188 (515)
|+.|+|++|+|||+| +..+.+...
T Consensus 1 kI~V~G~~g~GKTsL-i~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSL-IRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHSS-
T ss_pred CEEEECcCCCCHHHH-HHHHhcCCC
Confidence 689999999999999 688886543
No 352
>PRK05642 DNA replication initiation factor; Validated
Probab=91.96 E-value=0.15 Score=50.68 Aligned_cols=34 Identities=12% Similarity=0.301 Sum_probs=23.4
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc-CCCeEEEEEEe
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK-NKNVTCIYVAI 198 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~-~~~~~~V~~~i 198 (515)
.+.|.|++|+|||+| +..+.++. ..+..|+|+-.
T Consensus 47 ~l~l~G~~G~GKTHL-l~a~~~~~~~~~~~v~y~~~ 81 (234)
T PRK05642 47 LIYLWGKDGVGRSHL-LQAACLRFEQRGEPAVYLPL 81 (234)
T ss_pred eEEEECCCCCCHHHH-HHHHHHHHHhCCCcEEEeeH
Confidence 457889999999999 46776642 22345666653
No 353
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.94 E-value=0.096 Score=53.43 Aligned_cols=29 Identities=17% Similarity=0.350 Sum_probs=26.5
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+.++|+|+.|+||||| +.+|+..
T Consensus 28 l~i~~Ge~~~iiG~NGaGKSTL-l~~l~Gl 56 (287)
T PRK13641 28 FELEEGSFVALVGHTGSGKSTL-MQHFNAL 56 (287)
T ss_pred EEEeCCCEEEEECCCCCCHHHH-HHHHhcC
Confidence 5788999999999999999999 6888875
No 354
>PRK05595 replicative DNA helicase; Provisional
Probab=91.94 E-value=0.21 Score=54.36 Aligned_cols=61 Identities=16% Similarity=0.299 Sum_probs=44.4
Q ss_pred cccccccccccccc-ccCCcceeeecCCCCCccHHHHHHHHHhc-CCCeEEEEEEecCChHHH
Q psy2894 145 PLQTGIKAIDSIVP-IGKGQRELIIGDRQTGKSSIAIDIIINQK-NKNVTCIYVAIGQKISSI 205 (515)
Q Consensus 145 pl~TGik~ID~l~p-igrGqr~~I~g~~g~GKt~l~~~~i~~~~-~~~~~~V~~~iGer~~ev 205 (515)
-+.||+..+|-++- +-+|+=+.|-|.||+|||+++++...+.. ..+-.+.|...-+..+++
T Consensus 183 gi~tg~~~ld~~~~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l 245 (444)
T PRK05595 183 GVASGFRELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQL 245 (444)
T ss_pred cccCChHHHHHhcCCCCCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHH
Confidence 47899999999873 77888888999999999999877766532 333334555555544443
No 355
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=91.94 E-value=0.1 Score=52.68 Aligned_cols=30 Identities=17% Similarity=0.447 Sum_probs=26.2
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
=+.+.+|++.+|+|++|+||||| +.+|+..
T Consensus 32 s~~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 61 (268)
T PRK10419 32 SLSLKSGETVALLGRSGCGKSTL-ARLLVGL 61 (268)
T ss_pred eEEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 36888999999999999999999 6887754
No 356
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.93 E-value=0.1 Score=51.95 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=25.4
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
+.+.+|+..+|+|++|+||||| +.+|+.
T Consensus 27 ~~i~~Ge~~~i~G~nGsGKSTL-l~~l~G 54 (253)
T PRK14261 27 ISIPKNRVTALIGPSGCGKSTL-LRCFNR 54 (253)
T ss_pred EEECCCcEEEEECCCCCCHHHH-HHHHhc
Confidence 5788999999999999999999 688875
No 357
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=91.93 E-value=0.11 Score=50.05 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=25.7
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+-+|+..+|+|++|+||||| +.+|+..
T Consensus 29 l~i~~G~~~~i~G~nGsGKSTL-l~~l~Gl 57 (207)
T cd03369 29 FKVKAGEKIGIVGRTGAGKSTL-ILALFRF 57 (207)
T ss_pred EEECCCCEEEEECCCCCCHHHH-HHHHhcc
Confidence 5778999999999999999999 6888764
No 358
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=91.90 E-value=0.1 Score=52.21 Aligned_cols=29 Identities=28% Similarity=0.386 Sum_probs=25.5
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.|-+|+..+|+|++|+||||| +.+|+..
T Consensus 34 l~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 62 (260)
T PRK10744 34 LDIAKNQVTAFIGPSGCGKSTL-LRTFNRM 62 (260)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhcc
Confidence 5788999999999999999999 6887754
No 359
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.89 E-value=0.1 Score=51.84 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=25.5
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
=+.+.+|+.++|+|++|+||||| +.+|+.
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTL-l~~i~G 51 (250)
T PRK14245 23 SMEIEEKSVVAFIGPSGCGKSTF-LRLFNR 51 (250)
T ss_pred eEEEeCCCEEEEECCCCCCHHHH-HHHHhh
Confidence 35788999999999999999999 688864
No 360
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=91.89 E-value=0.85 Score=41.96 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=17.2
Q ss_pred eeeecCCCCCccHHHHHHHHHhc
Q psy2894 165 ELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 165 ~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.++|++|+||||++ ..+.+.-
T Consensus 1 i~l~G~~GsGKSTla-~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIA-SALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHH-HHHHHhc
Confidence 468999999999995 6666553
No 361
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.86 E-value=0.43 Score=50.00 Aligned_cols=87 Identities=17% Similarity=0.258 Sum_probs=53.5
Q ss_pred CcceeeecCCCCCccHHHHHHHHHh-cCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEE-eCCCCCHHhhHHHH
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQ-KNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVA-ATASDSASMQFISA 239 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~-~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~-~t~~~~~~~r~~a~ 239 (515)
---++++|-.|+||||. +.-++++ +..+..|+++|+. ..|-.+ ++.|+..+-.-.+-+|. ....||+..-|-|.
T Consensus 139 p~Vil~vGVNG~GKTTT-IaKLA~~l~~~g~~VllaA~D-TFRAaA--iEQL~~w~er~gv~vI~~~~G~DpAaVafDAi 214 (340)
T COG0552 139 PFVILFVGVNGVGKTTT-IAKLAKYLKQQGKSVLLAAGD-TFRAAA--IEQLEVWGERLGVPVISGKEGADPAAVAFDAI 214 (340)
T ss_pred cEEEEEEecCCCchHhH-HHHHHHHHHHCCCeEEEEecc-hHHHHH--HHHHHHHHHHhCCeEEccCCCCCcHHHHHHHH
Confidence 34578999999999998 6777775 4555555555554 444322 23343333223345665 45778777544443
Q ss_pred hhhhhhHHHHHHcCCcEEEE
Q psy2894 240 YSGCTIGEYFRDHGKDALVV 259 (515)
Q Consensus 240 ~~a~~iAE~frd~G~~Vlli 259 (515)
++-..+|.||||+
T Consensus 215 -------~~Akar~~Dvvli 227 (340)
T COG0552 215 -------QAAKARGIDVVLI 227 (340)
T ss_pred -------HHHHHcCCCEEEE
Confidence 3446789999875
No 362
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=91.85 E-value=0.65 Score=45.33 Aligned_cols=40 Identities=10% Similarity=0.200 Sum_probs=28.4
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHhc-CCCeEEEEEEecC
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQK-NKNVTCIYVAIGQ 200 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~~-~~~~~~V~~~iGe 200 (515)
..+.-+.|.|++|||||+|+ ..+.++. ..+..++|+-+.+
T Consensus 40 ~~~~~~~l~G~~G~GKT~La-~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLL-QALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CCCCeEEEECCCCCCHHHHH-HHHHHHHHhCCCcEEEEehHH
Confidence 34567899999999999995 7777753 3344456666544
No 363
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=91.85 E-value=2.7 Score=46.76 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=19.5
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
.+++.||||||||+++ ..+++.-
T Consensus 218 GILLyGPPGTGKT~LA-KAlA~eL 240 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIA-KAVANSL 240 (512)
T ss_pred ceEEECCCCCcHHHHH-HHHHHhh
Confidence 4999999999999995 7777764
No 364
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.85 E-value=0.17 Score=49.69 Aligned_cols=30 Identities=20% Similarity=0.423 Sum_probs=26.7
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.+.+|++.+|+|+.|+||||| +.+|+...
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTL-l~~l~g~~ 50 (232)
T cd03300 21 LDIKEGEFFTLLGPSGCGKTTL-LRLIAGFE 50 (232)
T ss_pred EEECCCCEEEEECCCCCCHHHH-HHHHhcCC
Confidence 5788999999999999999999 68888753
No 365
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=91.84 E-value=0.1 Score=55.22 Aligned_cols=35 Identities=23% Similarity=0.446 Sum_probs=29.0
Q ss_pred ccc-ccccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 152 AID-SIVPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 152 ~ID-~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++ .=+.+.+|+..+|+|++|+||||| +.+|+...
T Consensus 17 ~l~~isl~i~~Ge~~~llGpsGsGKSTL-Lr~IaGl~ 52 (353)
T PRK10851 17 VLNDISLDIPSGQMVALLGPSGSGKTTL-LRIIAGLE 52 (353)
T ss_pred EEEEeEEEEcCCCEEEEECCCCCCHHHH-HHHHhCCC
Confidence 443 336788999999999999999999 79988753
No 366
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=91.83 E-value=0.1 Score=50.47 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=27.9
Q ss_pred cccccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 154 DSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 154 D~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
|.=+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 16 ~~s~~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~ 47 (213)
T TIGR01277 16 EFDLNVADGEIVAIMGPSGAGKSTL-LNLIAGF 47 (213)
T ss_pred eeEEEEeCCcEEEEECCCCCCHHHH-HHHHhcC
Confidence 5557889999999999999999999 6888764
No 367
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=91.82 E-value=0.11 Score=54.39 Aligned_cols=36 Identities=28% Similarity=0.519 Sum_probs=29.8
Q ss_pred ccccccc-ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 150 IKAIDSI-VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 150 ik~ID~l-~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.+++|.+ +.|.+|+..+|+|++|+||||| +.+|...
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL-l~~i~Gl 56 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLI-AKAICGV 56 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHH-HHHHHcc
Confidence 3466655 4899999999999999999999 5877764
No 368
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=91.82 E-value=0.099 Score=45.33 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=20.0
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
|++|+|.+|+||||| +..+.++
T Consensus 1 ~V~iiG~~~~GKSTl-in~l~~~ 22 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTL-INALTGK 22 (116)
T ss_dssp EEEEEESTTSSHHHH-HHHHHTS
T ss_pred CEEEECCCCCCHHHH-HHHHhcc
Confidence 689999999999999 7999874
No 369
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.79 E-value=0.11 Score=47.73 Aligned_cols=33 Identities=18% Similarity=0.364 Sum_probs=27.5
Q ss_pred cccccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 154 DSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 154 D~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
|.-+.+.+|+..+|+|+.|+||||| +.+|...-
T Consensus 17 ~~~~~i~~g~~~~i~G~nGsGKStl-l~~l~g~~ 49 (157)
T cd00267 17 NVSLTLKAGEIVALVGPNGSGKSTL-LRAIAGLL 49 (157)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHH-HHHHhCCC
Confidence 3345788999999999999999999 68887643
No 370
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.78 E-value=0.11 Score=52.79 Aligned_cols=32 Identities=9% Similarity=0.192 Sum_probs=27.6
Q ss_pred cccccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 154 DSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 154 D~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
|.=+.|.+|+.++|+|++|+||||| +.+|+..
T Consensus 39 ~vs~~i~~Ge~~~I~G~nGsGKSTL-l~~l~Gl 70 (276)
T PRK14271 39 QVSMGFPARAVTSLMGPTGSGKTTF-LRTLNRM 70 (276)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHH-HHHHhcc
Confidence 4446888999999999999999999 6888864
No 371
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.77 E-value=0.11 Score=53.62 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=26.3
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
=+.|.+|+..+|+|++|+||||| +.+|+..
T Consensus 65 s~~i~~Ge~~~IvG~nGsGKSTL-l~~L~Gl 94 (305)
T PRK14264 65 SMDIPEKSVTALIGPSGCGKSTF-LRCLNRM 94 (305)
T ss_pred EEEEcCCCEEEEECCCCCCHHHH-HHHHhcc
Confidence 35789999999999999999999 6888754
No 372
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=91.76 E-value=0.11 Score=51.87 Aligned_cols=29 Identities=21% Similarity=0.424 Sum_probs=25.6
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +..|...
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl 51 (255)
T PRK11231 23 LSLPTGKITALIGPNGCGKSTL-LKCFARL 51 (255)
T ss_pred eEEcCCcEEEEECCCCCCHHHH-HHHHhCC
Confidence 5788999999999999999999 6887753
No 373
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=91.76 E-value=0.42 Score=52.24 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=26.4
Q ss_pred ceeeecCCCCCccHHHHHHHHHh---cCCCeEEEEEEec
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ---KNKNVTCIYVAIG 199 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~---~~~~~~~V~~~iG 199 (515)
.+.|.|++|+|||+| +..|.+. ...+..++|+-..
T Consensus 143 pl~i~G~~G~GKTHL-l~Ai~~~l~~~~~~~~v~yv~~~ 180 (450)
T PRK14087 143 PLFIYGESGMGKTHL-LKAAKNYIESNFSDLKVSYMSGD 180 (450)
T ss_pred ceEEECCCCCcHHHH-HHHHHHHHHHhCCCCeEEEEEHH
Confidence 478999999999999 4778773 2456667776653
No 374
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.75 E-value=0.1 Score=53.30 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=27.2
Q ss_pred cccccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 154 DSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 154 D~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
|.=+.|.+|++++|+|++|+||||| +.+|...
T Consensus 24 ~vsl~i~~Ge~v~i~G~nGsGKSTL-l~~l~Gl 55 (288)
T PRK13643 24 DIDLEVKKGSYTALIGHTGSGKSTL-LQHLNGL 55 (288)
T ss_pred eeEEEEcCCCEEEEECCCCChHHHH-HHHHhcC
Confidence 4446889999999999999999999 5777754
No 375
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=91.74 E-value=0.11 Score=54.82 Aligned_cols=36 Identities=25% Similarity=0.472 Sum_probs=30.8
Q ss_pred cccccc-ccccccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 149 GIKAID-SIVPIGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 149 Gik~ID-~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
+..++| .=+.|.+|.-..+.||+||||||+ |.+|+-
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTl-LR~IAG 53 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTL-LRMIAG 53 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHH-HHHHhC
Confidence 566776 446999999999999999999999 788885
No 376
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=91.72 E-value=0.11 Score=50.46 Aligned_cols=29 Identities=21% Similarity=0.458 Sum_probs=26.0
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +..|...
T Consensus 26 ~~i~~G~~~~I~G~nGsGKStL-l~~l~G~ 54 (220)
T TIGR02982 26 LEINPGEIVILTGPSGSGKTTL-LTLIGGL 54 (220)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 5778999999999999999999 6888864
No 377
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=91.71 E-value=0.11 Score=50.99 Aligned_cols=29 Identities=24% Similarity=0.516 Sum_probs=26.1
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+-+|+..+|+|++|+||||| +.+|+..
T Consensus 43 ~~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~ 71 (224)
T cd03220 43 FEVPRGERIGLIGRNGAGKSTL-LRLLAGI 71 (224)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 5788999999999999999999 6888864
No 378
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=91.69 E-value=1.7 Score=44.53 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=16.0
Q ss_pred CcceeeecCCCCCccHHH
Q psy2894 162 GQRELIIGDRQTGKSSIA 179 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~ 179 (515)
|-.+++.|+||||||++|
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 446899999999999997
No 379
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=91.68 E-value=0.12 Score=50.21 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=25.7
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+-+|+..+|+|++|+||||| +.+|+..
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTL-l~~l~G~ 53 (221)
T cd03244 25 FSIKPGEKVGIVGRTGSGKSSL-LLALFRL 53 (221)
T ss_pred EEECCCCEEEEECCCCCCHHHH-HHHHHcC
Confidence 5788999999999999999999 6887754
No 380
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=91.67 E-value=0.15 Score=40.63 Aligned_cols=22 Identities=41% Similarity=0.676 Sum_probs=18.9
Q ss_pred CcceeeecCCCCCccHHHHHHHH
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIII 184 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~ 184 (515)
|--.+|.|+.|+||||| +|+|.
T Consensus 23 g~~tli~G~nGsGKSTl-lDAi~ 44 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTL-LDAIQ 44 (62)
T ss_pred CcEEEEECCCCCCHHHH-HHHHH
Confidence 34789999999999999 68875
No 381
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=91.66 E-value=0.11 Score=52.67 Aligned_cols=29 Identities=21% Similarity=0.486 Sum_probs=25.9
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.|.+|+..+|+|++|+||||| +.+|+..
T Consensus 22 l~i~~Ge~~~l~G~nGsGKSTL-l~~laG~ 50 (272)
T PRK13547 22 LRIEPGRVTALLGRNGAGKSTL-LKALAGD 50 (272)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 5788999999999999999999 6888764
No 382
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=91.66 E-value=0.11 Score=52.21 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=26.9
Q ss_pred ccccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 155 SIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 155 ~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.=+.+-+|+..+|+|++|+||||| +.+|...
T Consensus 32 vsl~i~~Ge~~~i~G~NGsGKSTL-l~~l~Gl 62 (267)
T PRK15112 32 LSFTLREGQTLAIIGENGSGKSTL-AKMLAGM 62 (267)
T ss_pred eeEEecCCCEEEEEcCCCCCHHHH-HHHHhCC
Confidence 346788999999999999999999 6888765
No 383
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=91.64 E-value=0.11 Score=54.88 Aligned_cols=31 Identities=16% Similarity=0.380 Sum_probs=27.1
Q ss_pred ccccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 155 SIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 155 ~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.=+.+-+|+..+|+|++|+||||| +.+|+..
T Consensus 25 isl~i~~Ge~~~llGpsGsGKSTL-Lr~IaGl 55 (351)
T PRK11432 25 LNLTIKQGTMVTLLGPSGCGKTTV-LRLVAGL 55 (351)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHH-HHHHHCC
Confidence 346788999999999999999999 6888864
No 384
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.64 E-value=0.12 Score=49.94 Aligned_cols=28 Identities=21% Similarity=0.508 Sum_probs=24.2
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+| +.+|+|++|+||||| +.+|...
T Consensus 21 ~~i~~g-~~~i~G~nGsGKSTL-l~~l~Gl 48 (211)
T cd03264 21 LTLGPG-MYGLLGPNGAGKTTL-MRILATL 48 (211)
T ss_pred EEEcCC-cEEEECCCCCCHHHH-HHHHhCC
Confidence 467789 999999999999999 6888764
No 385
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.63 E-value=0.11 Score=52.62 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=26.1
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.|.+|+.++|+|++|+||||| +.+|...
T Consensus 23 l~i~~Ge~~~l~G~nGsGKSTL-l~~i~Gl 51 (275)
T PRK13639 23 FKAEKGEMVALLGPNGAGKSTL-FLHFNGI 51 (275)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 6888999999999999999999 6888764
No 386
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=91.63 E-value=0.35 Score=49.42 Aligned_cols=41 Identities=12% Similarity=0.160 Sum_probs=26.8
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHhcC--CCeEEEEEEecC
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQKN--KNVTCIYVAIGQ 200 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~~~--~~~~~V~~~iGe 200 (515)
.+|+.++|+|+.|+||||++......... .+..+.++.+..
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 47889999999999999996433333221 223445556554
No 387
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.63 E-value=0.8 Score=50.45 Aligned_cols=110 Identities=16% Similarity=0.167 Sum_probs=54.1
Q ss_pred cceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhh
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSG 242 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a 242 (515)
+-.++.|++|+||||+| ..+++.-+..-..-.-.||+-.. ...+......+ ++-...++..-....+...
T Consensus 41 ha~Lf~GP~GtGKTTlA-riLAk~Lnce~~~~~~pCg~C~s-----C~~i~~g~~~d--viEIdaas~~gVd~IReL~-- 110 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIA-RILAKRLNCENPIGNEPCNECTS-----CLEITKGISSD--VLEIDAASNRGIENIRELR-- 110 (484)
T ss_pred eEEEEECCCCCCHHHHH-HHHHHhcCcccccCccccCCCcH-----HHHHHccCCcc--ceeechhhcccHHHHHHHH--
Confidence 44799999999999996 55555322110000124554443 12222221122 2222222221122222111
Q ss_pred hhhHHHHHHcCCcEEEEEechhHHHH-HHHHHHHhcCCCCCC
Q psy2894 243 CTIGEYFRDHGKDALVVYDDLSKQAV-AYRQISLLLKRPPGR 283 (515)
Q Consensus 243 ~~iAE~frd~G~~Vlli~Dsltr~a~-A~reisl~l~~pp~~ 283 (515)
.-+.|-...|+..++|+|..-++.. |.+.+-..+.+||..
T Consensus 111 -e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~ 151 (484)
T PRK14956 111 -DNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAH 151 (484)
T ss_pred -HHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCc
Confidence 1111222357788899999877765 555565567777753
No 388
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=91.63 E-value=0.42 Score=55.26 Aligned_cols=30 Identities=23% Similarity=0.396 Sum_probs=23.5
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHhcCCC
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQKNKN 190 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~~~~~ 190 (515)
++-..++|.|++||||||+| ..+++..+..
T Consensus 50 ~~~~slLL~GPpGtGKTTLA-~aIA~~~~~~ 79 (725)
T PRK13341 50 DRVGSLILYGPPGVGKTTLA-RIIANHTRAH 79 (725)
T ss_pred CCCceEEEECCCCCCHHHHH-HHHHHHhcCc
Confidence 55567899999999999995 7777765443
No 389
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.62 E-value=0.11 Score=52.01 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=26.2
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+.++|+|++|+||||| +.+|+..
T Consensus 31 ~~i~~Ge~~~i~G~nGsGKSTL-l~~iaG~ 59 (257)
T PRK14246 31 IKIPNNSIFGIMGPSGSGKSTL-LKVLNRL 59 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 5788999999999999999999 6888865
No 390
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=91.62 E-value=1.4 Score=42.75 Aligned_cols=138 Identities=16% Similarity=0.124 Sum_probs=80.3
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHhcCCC--eEEEEEEecC-ChHHHHHHHHHHhhcC--CCCcEEEEEeCCCCCHHhh
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQKNKN--VTCIYVAIGQ-KISSIKKTANLLEKYG--AMPYTIIVAATASDSASMQ 235 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~~~~~--~~~V~~~iGe-r~~ev~~~~~~l~~~~--~~~~t~vv~~t~~~~~~~r 235 (515)
....+.|++++|.||||.|+...++....+ |.+|--+=|. ...|.. +++.+..-. .+.....+. + +.+...
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~-~l~~l~~v~~~~~g~~~~~~-~--~~~~e~ 96 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERN-LLEFGGGVEFHVMGTGFTWE-T--QDRERD 96 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHH-HHhcCCCcEEEECCCCCccc-C--CCcHHH
Confidence 456899999999999999999988876555 4334444455 334432 223321000 001111111 1 334466
Q ss_pred HHHHhhhhhhHHHHHHcCCcEEEEEechhHHHH-----HHHHHHHhcCCCCCCCC-CCCchhhhhhHHHHHhhcc
Q psy2894 236 FISAYSGCTIGEYFRDHGKDALVVYDDLSKQAV-----AYRQISLLLKRPPGREA-YPGDIFYLHSRLLERSARV 304 (515)
Q Consensus 236 ~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~-----A~reisl~l~~pp~~~g-ypg~vf~~~~rl~ERag~~ 304 (515)
...+..+...|......|.-=|||+|.+..-.. ...=+.++-.+|+..+= .+| -+....|+|+|--+
T Consensus 97 ~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTG--R~~p~~Lie~ADlV 169 (191)
T PRK05986 97 IAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITG--RGAPRELIEAADLV 169 (191)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEEC--CCCCHHHHHhCchh
Confidence 677778888888877788888899999986444 22234555566765321 111 13345677766544
No 391
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=91.61 E-value=0.11 Score=54.92 Aligned_cols=31 Identities=16% Similarity=0.392 Sum_probs=27.5
Q ss_pred ccccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 155 SIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 155 ~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.=+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 23 vsl~i~~Ge~~~llG~sGsGKSTL-Lr~iaGl 53 (356)
T PRK11650 23 IDLDVADGEFIVLVGPSGCGKSTL-LRMVAGL 53 (356)
T ss_pred eeEEEcCCCEEEEECCCCCcHHHH-HHHHHCC
Confidence 446888999999999999999999 7888875
No 392
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=91.60 E-value=0.12 Score=50.59 Aligned_cols=30 Identities=27% Similarity=0.512 Sum_probs=26.4
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
-+.+-+|+..+|+|++|+||||| +.+|...
T Consensus 27 sl~i~~Ge~~~l~G~nGsGKSTL-lk~l~G~ 56 (226)
T cd03234 27 SLHVESGQVMAILGSSGSGKTTL-LDAISGR 56 (226)
T ss_pred eEEEcCCeEEEEECCCCCCHHHH-HHHHhCc
Confidence 45788999999999999999999 6888764
No 393
>KOG2028|consensus
Probab=91.60 E-value=0.43 Score=50.67 Aligned_cols=104 Identities=16% Similarity=0.260 Sum_probs=60.7
Q ss_pred ceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEec---CChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIG---QKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAY 240 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iG---er~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~ 240 (515)
-+.+.|++|||||+|| ..|++...... .-|+-+- .+..+|+++++.-++
T Consensus 164 SmIlWGppG~GKTtlA-rlia~tsk~~S-yrfvelSAt~a~t~dvR~ife~aq~-------------------------- 215 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLA-RLIASTSKKHS-YRFVELSATNAKTNDVRDIFEQAQN-------------------------- 215 (554)
T ss_pred ceEEecCCCCchHHHH-HHHHhhcCCCc-eEEEEEeccccchHHHHHHHHHHHH--------------------------
Confidence 4567899999999996 67776543332 1333333 334444444443322
Q ss_pred hhhhhHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCC------CCCCCCCCchhhhhhHHHHHhhcc
Q psy2894 241 SGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRP------PGREAYPGDIFYLHSRLLERSARV 304 (515)
Q Consensus 241 ~a~~iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~p------p~~~gypg~vf~~~~rl~ERag~~ 304 (515)
+...-+++.++++|.+.||-.++..+-|=.=|- -+.-.-|. |.+-+-|+-|+.-+
T Consensus 216 -------~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPS--Fqln~aLlSRC~Vf 276 (554)
T KOG2028|consen 216 -------EKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPS--FQLNAALLSRCRVF 276 (554)
T ss_pred -------HHhhhcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCc--cchhHHHHhcccee
Confidence 112236788899999999999999875411000 00001122 77777777777655
No 394
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.59 E-value=0.17 Score=49.81 Aligned_cols=29 Identities=24% Similarity=0.491 Sum_probs=26.0
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.|.+|++.+|+|++|+||||| +..|...
T Consensus 20 ~~i~~Ge~~~i~G~nG~GKStL-l~~l~G~ 48 (235)
T cd03299 20 LEVERGDYFVILGPTGSGKSVL-LETIAGF 48 (235)
T ss_pred EEEcCCcEEEEECCCCCCHHHH-HHHHhCC
Confidence 6788999999999999999999 6888765
No 395
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.59 E-value=0.11 Score=52.55 Aligned_cols=29 Identities=21% Similarity=0.424 Sum_probs=26.3
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.|-+|+.++|+|++|+||||| +.+|...
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 54 (274)
T PRK13647 26 LSIPEGSKTALLGPNGAGKSTL-LLHLNGI 54 (274)
T ss_pred EEEcCCCEEEEECCCCCcHHHH-HHHHhcC
Confidence 5888999999999999999999 6888864
No 396
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.55 E-value=0.12 Score=52.82 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=25.8
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.|.+|+..+|+|++|+||||| +.+|+..
T Consensus 60 ~~i~~Ge~~~I~G~nGsGKSTL-l~~l~Gl 88 (285)
T PRK14254 60 MDIPENQVTAMIGPSGCGKSTF-LRCINRM 88 (285)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhcc
Confidence 4788999999999999999999 6888754
No 397
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=91.55 E-value=0.12 Score=52.60 Aligned_cols=36 Identities=28% Similarity=0.592 Sum_probs=30.8
Q ss_pred ccccccc-ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 150 IKAIDSI-VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 150 ik~ID~l-~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
++|+|.. +.|.+|...|++|.+|+||||++ .+|+.-
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlg-r~i~~L 62 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLG-RLILGL 62 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHH-HHHHcC
Confidence 5788755 59999999999999999999996 777763
No 398
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=91.53 E-value=0.12 Score=54.34 Aligned_cols=29 Identities=24% Similarity=0.480 Sum_probs=26.2
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
=+.|..|.-+.++||+||||||+ |.+|+-
T Consensus 23 ~l~i~~Gef~vllGPSGcGKSTl-Lr~IAG 51 (338)
T COG3839 23 NLDIEDGEFVVLLGPSGCGKSTL-LRMIAG 51 (338)
T ss_pred eEEEcCCCEEEEECCCCCCHHHH-HHHHhC
Confidence 35889999999999999999999 799885
No 399
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=91.51 E-value=0.19 Score=46.02 Aligned_cols=30 Identities=27% Similarity=0.540 Sum_probs=26.0
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.+-+|+..+|+|++|+||||| +.+|....
T Consensus 21 ~~~~~Ge~~~i~G~nGsGKStL-l~~l~G~~ 50 (144)
T cd03221 21 LTINPGDRIGLVGRNGAGKSTL-LKLIAGEL 50 (144)
T ss_pred EEECCCCEEEEECCCCCCHHHH-HHHHcCCC
Confidence 4677999999999999999999 68887653
No 400
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.49 E-value=0.12 Score=52.81 Aligned_cols=31 Identities=26% Similarity=0.197 Sum_probs=27.0
Q ss_pred ccccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 155 SIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 155 ~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.=+.|.+|+..+|+|++|+||||| +.+|+..
T Consensus 58 vsl~i~~Ge~~~l~G~nGsGKSTL-l~~L~Gl 88 (286)
T PRK14275 58 VNADILSKYVTAIIGPSGCGKSTF-LRAINRM 88 (286)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHH-HHHHhcc
Confidence 345889999999999999999999 6888763
No 401
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.47 E-value=0.12 Score=51.92 Aligned_cols=30 Identities=30% Similarity=0.401 Sum_probs=25.7
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
=+.+.+|+.++|+|++|+||||| +..|...
T Consensus 28 s~~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 57 (261)
T PRK14263 28 HVPIRKNEITGFIGPSGCGKSTV-LRSLNRM 57 (261)
T ss_pred EEEEcCCCEEEEECCCCCCHHHH-HHHHHcc
Confidence 35788999999999999999999 6777643
No 402
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=91.46 E-value=0.11 Score=51.22 Aligned_cols=29 Identities=21% Similarity=0.449 Sum_probs=25.8
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.|-+|+.++|+|++|+||||| +.+|...
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 50 (248)
T PRK09580 22 LEVRPGEVHAIMGPNGSGKSTL-SATLAGR 50 (248)
T ss_pred eEEcCCCEEEEECCCCCCHHHH-HHHHcCC
Confidence 5678999999999999999999 6888765
No 403
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.45 E-value=0.12 Score=52.60 Aligned_cols=29 Identities=31% Similarity=0.496 Sum_probs=26.0
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.|.+|+.++|+|+.|+||||| +.+|+..
T Consensus 28 l~i~~Ge~~~I~G~nGaGKSTL-l~~l~G~ 56 (282)
T PRK13640 28 FSIPRGSWTALIGHNGSGKSTI-SKLINGL 56 (282)
T ss_pred EEEcCCCEEEEECCCCCcHHHH-HHHHhcc
Confidence 4788999999999999999999 6888865
No 404
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=91.43 E-value=0.12 Score=52.09 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=25.8
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 46 ~~i~~Ge~~~I~G~nGsGKSTL-l~~laGl 74 (272)
T PRK14236 46 MRIPKNRVTAFIGPSGCGKSTL-LRCFNRM 74 (272)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHHhc
Confidence 5778999999999999999999 6888755
No 405
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=91.43 E-value=0.12 Score=53.52 Aligned_cols=34 Identities=32% Similarity=0.484 Sum_probs=27.9
Q ss_pred ccc-ccccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 152 AID-SIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 152 ~ID-~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+++ .=+.|.+|+.++|+|++|+||||| +..|...
T Consensus 22 ~l~~vsl~i~~Ge~v~iiG~nGsGKSTL-l~~L~Gl 56 (305)
T PRK13651 22 ALDNVSVEINQGEFIAIIGQTGSGKTTF-IEHLNAL 56 (305)
T ss_pred ceeeeEEEEeCCCEEEEECCCCCcHHHH-HHHHhCC
Confidence 443 346889999999999999999999 5777754
No 406
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.40 E-value=0.18 Score=50.72 Aligned_cols=32 Identities=38% Similarity=0.544 Sum_probs=27.5
Q ss_pred cccccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 154 DSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 154 D~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
|.=+.+-+|+..+|+|++|+||||| +.+|+..
T Consensus 27 ~isl~i~~Ge~~~I~G~nGsGKSTL-l~~i~Gl 58 (269)
T PRK13648 27 DVSFNIPKGQWTSIVGHNGSGKSTI-AKLMIGI 58 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHH-HHHHhcC
Confidence 3346788999999999999999999 6888875
No 407
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=91.37 E-value=0.12 Score=51.58 Aligned_cols=29 Identities=21% Similarity=0.423 Sum_probs=25.8
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+-+|+.++|+|++|+||||| +..|+..
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTL-l~~i~G~ 50 (256)
T TIGR03873 22 VTAPPGSLTGLLGPNGSGKSTL-LRLLAGA 50 (256)
T ss_pred EEEcCCcEEEEECCCCCCHHHH-HHHHcCC
Confidence 4677999999999999999999 6888764
No 408
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.36 E-value=0.13 Score=52.27 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=26.3
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.|.+|+.++|+|++|+||||| +..|+..
T Consensus 25 l~i~~Ge~~~i~G~NGsGKSTL-l~~l~Gl 53 (277)
T PRK13652 25 FIAPRNSRIAVIGPNGAGKSTL-FRHFNGI 53 (277)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhcC
Confidence 5888999999999999999999 6888865
No 409
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=91.34 E-value=0.21 Score=53.57 Aligned_cols=36 Identities=25% Similarity=0.532 Sum_probs=30.3
Q ss_pred cccccccc-cccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 150 IKAIDSIV-PIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 150 ik~ID~l~-pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
++|+|.+. ++-+||.+||+|.+|+||||+. .++++-
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG-~allrL 336 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLG-LALLRL 336 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHH-HHHHhh
Confidence 68888875 9999999999999999999996 445543
No 410
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.34 E-value=0.13 Score=52.41 Aligned_cols=29 Identities=21% Similarity=0.425 Sum_probs=26.2
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.|-+|+..+|+|++|+||||| +.+|+..
T Consensus 28 l~i~~Ge~~~i~G~nGaGKSTL-l~~i~G~ 56 (279)
T PRK13635 28 FSVYEGEWVAIVGHNGSGKSTL-AKLLNGL 56 (279)
T ss_pred EEEcCCCEEEEECCCCCcHHHH-HHHHhcC
Confidence 6888999999999999999999 6888765
No 411
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.34 E-value=0.13 Score=51.70 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=26.9
Q ss_pred cccccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 154 DSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 154 D~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
|.=+.+-+|++.+|+|++|+||||| +.+|...
T Consensus 34 ~vs~~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 65 (265)
T PRK14252 34 NINMMVHEKQVTALIGPSGCGKSTF-LRCFNRM 65 (265)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHH-HHHHhcc
Confidence 3345688999999999999999999 6888754
No 412
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=91.33 E-value=0.12 Score=54.54 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=27.6
Q ss_pred ccccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 155 SIVPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 155 ~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
.=+.+..|+..+|+|++|+||||| +.+|+-.-
T Consensus 23 vs~~i~~Ge~~~l~GpsGsGKSTL-Lr~iaGl~ 54 (353)
T TIGR03265 23 ISLSVKKGEFVCLLGPSGCGKTTL-LRIIAGLE 54 (353)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHH-HHHHHCCC
Confidence 446788999999999999999999 79888753
No 413
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=91.33 E-value=0.13 Score=52.70 Aligned_cols=32 Identities=28% Similarity=0.484 Sum_probs=27.1
Q ss_pred cccccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 154 DSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 154 D~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
|.=+.+.+|++.+|+|++|+||||| +.+|+..
T Consensus 55 ~vs~~i~~Ge~~~liG~NGsGKSTL-l~~I~Gl 86 (282)
T cd03291 55 NINLKIEKGEMLAITGSTGSGKTSL-LMLILGE 86 (282)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 3345788999999999999999999 6888764
No 414
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=91.32 E-value=0.12 Score=54.17 Aligned_cols=36 Identities=19% Similarity=0.402 Sum_probs=29.4
Q ss_pred ccccccc-ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 150 IKAIDSI-VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 150 ik~ID~l-~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
++++|.+ +.|.+|+..+|+|++|+||||| +.+|+..
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL-~~~l~Gl 65 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQT-AFALMGL 65 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHH-HHHHHcC
Confidence 3455554 5889999999999999999999 5887764
No 415
>PF02283 CobU: Cobinamide kinase / cobinamide phosphate guanyltransferase; InterPro: IPR003203 This family is composed of a group of bifunctional cobalbumin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape [].; GO: 0000166 nucleotide binding, 0043752 adenosylcobinamide kinase activity, 0051188 cofactor biosynthetic process; PDB: 1CBU_C 1C9K_B.
Probab=91.30 E-value=0.65 Score=44.02 Aligned_cols=87 Identities=15% Similarity=0.222 Sum_probs=49.4
Q ss_pred eeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCCh-HHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhh
Q psy2894 165 ELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKI-SSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGC 243 (515)
Q Consensus 165 ~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~-~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~ 243 (515)
++|.|+..+|||..| +.++...+. ..+|+|.++.. .|+.+=++..++.-...-. .+-.+ .
T Consensus 1 ilv~GG~rSGKS~~A-e~la~~~~~--~~~YiAT~~~~D~em~~RI~~H~~~R~~~w~-tiE~~---------------~ 61 (167)
T PF02283_consen 1 ILVTGGARSGKSSFA-ERLALSFGG--PVTYIATARPFDEEMRERIARHRQRRPKGWI-TIEEP---------------R 61 (167)
T ss_dssp EEEEESTTSSHHHHH-HHHHTS--S--CEEEEESSHHHHHHHHHHHHHHHHHSSTCEE-EEE-S---------------S
T ss_pred CEEeCCCCcchHHHH-HHHHHhcCC--CcEEEeCCCCCCHHHHHHHHHHHHhCCCCcE-EEecc---------------h
Confidence 579999999999997 555533333 46999999877 3555555544443312222 22111 1
Q ss_pred hhHHHHHHcCCcEEEEEechhHHHHHH
Q psy2894 244 TIGEYFRDHGKDALVVYDDLSKQAVAY 270 (515)
Q Consensus 244 ~iAE~frd~G~~Vlli~Dsltr~a~A~ 270 (515)
.+++.+.....+-.+++|++|.|....
T Consensus 62 ~l~~~~~~~~~~~~vLlDclt~wl~n~ 88 (167)
T PF02283_consen 62 DLAEALEELSPGDVVLLDCLTLWLANL 88 (167)
T ss_dssp -GGGTS-TTS-T-EEEEE-HHHHHHHH
T ss_pred hHHHHHHHhccCCeEEEeCHHHHHHHH
Confidence 344444444336788899999997543
No 416
>KOG0651|consensus
Probab=91.30 E-value=0.39 Score=49.95 Aligned_cols=48 Identities=21% Similarity=0.239 Sum_probs=32.6
Q ss_pred eeeecCCCCCccHHHHHHHHHhcCCCeEEEEE------EecCChHHHHHHHHHHh
Q psy2894 165 ELIIGDRQTGKSSIAIDIIINQKNKNVTCIYV------AIGQKISSIKKTANLLE 213 (515)
Q Consensus 165 ~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~------~iGer~~ev~~~~~~l~ 213 (515)
+||.||+|+|||-+| ..++.+-+.+...|.. =|||.+|=+++..+...
T Consensus 169 ~ll~GppGtGKTlla-~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~ 222 (388)
T KOG0651|consen 169 LLLYGPPGTGKTLLA-RAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAR 222 (388)
T ss_pred eEEeCCCCCchhHHH-HHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHh
Confidence 689999999999996 8899888888643322 14555555554444433
No 417
>PRK08760 replicative DNA helicase; Provisional
Probab=91.29 E-value=0.26 Score=54.23 Aligned_cols=61 Identities=15% Similarity=0.227 Sum_probs=44.6
Q ss_pred ccccccccccccc-cccCCcceeeecCCCCCccHHHHHHHHHhc-CCCeEEEEEEecCChHHH
Q psy2894 145 PLQTGIKAIDSIV-PIGKGQRELIIGDRQTGKSSIAIDIIINQK-NKNVTCIYVAIGQKISSI 205 (515)
Q Consensus 145 pl~TGik~ID~l~-pigrGqr~~I~g~~g~GKt~l~~~~i~~~~-~~~~~~V~~~iGer~~ev 205 (515)
-+.||+..+|-++ -+-+|+=+.|-|.||+|||+++++...+.. ..+..++|...-+...++
T Consensus 211 Gi~TG~~~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql 273 (476)
T PRK08760 211 GLPTGYNDFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQL 273 (476)
T ss_pred cccCCcHHHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHH
Confidence 4789999999987 578899999999999999999877766543 223234455555544443
No 418
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.29 E-value=0.13 Score=52.57 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=26.0
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.|.+|+..+|+|++|+||||| +.+|...
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTL-l~~L~Gl 56 (286)
T PRK13646 28 TEFEQGKYYAIVGQTGSGKSTL-IQNINAL 56 (286)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhcC
Confidence 4788999999999999999999 6888765
No 419
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=91.26 E-value=0.13 Score=53.77 Aligned_cols=35 Identities=23% Similarity=0.481 Sum_probs=28.5
Q ss_pred ccccc-cccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 151 KAIDS-IVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 151 k~ID~-l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+++|. =+.|.+|+.++|+|++|+||||| +.+|...
T Consensus 29 ~~l~~vsl~i~~Ge~~~IvG~sGsGKSTL-l~~l~gl 64 (327)
T PRK11308 29 KALDGVSFTLERGKTLAVVGESGCGKSTL-ARLLTMI 64 (327)
T ss_pred eEEeeeEEEECCCCEEEEECCCCCcHHHH-HHHHHcC
Confidence 44444 35889999999999999999999 5777764
No 420
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.26 E-value=0.63 Score=51.43 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=16.9
Q ss_pred cceeeecCCCCCccHHHHHHHH
Q psy2894 163 QRELIIGDRQTGKSSIAIDIII 184 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~ 184 (515)
|-.++.|++|+||||+| ..++
T Consensus 36 ha~Lf~Gp~G~GKTT~A-rilA 56 (491)
T PRK14964 36 QSILLVGASGVGKTTCA-RIIS 56 (491)
T ss_pred ceEEEECCCCccHHHHH-HHHH
Confidence 46889999999999986 3444
No 421
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=91.26 E-value=0.53 Score=47.46 Aligned_cols=35 Identities=31% Similarity=0.501 Sum_probs=25.1
Q ss_pred CCcceeeecCCCCCccHHHHHHHHH-hcCCCeEEEEE
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIIN-QKNKNVTCIYV 196 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~-~~~~~~~~V~~ 196 (515)
.-..+++.|++|||||++ +.++++ ....+.++|-+
T Consensus 51 pannvLL~G~rGtGKSSl-Vkall~~y~~~GLRlIev 86 (249)
T PF05673_consen 51 PANNVLLWGARGTGKSSL-VKALLNEYADQGLRLIEV 86 (249)
T ss_pred CCcceEEecCCCCCHHHH-HHHHHHHHhhcCceEEEE
Confidence 346788999999999999 466665 45556665443
No 422
>PRK07004 replicative DNA helicase; Provisional
Probab=91.25 E-value=0.32 Score=53.25 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=36.5
Q ss_pred ccccccccccccc-cccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 145 PLQTGIKAIDSIV-PIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 145 pl~TGik~ID~l~-pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
-+.||+.-+|-++ -+-+|+=+.|-|.||+|||+++++...+.
T Consensus 195 gi~TG~~~LD~~t~G~~~g~liviaarpg~GKT~~al~ia~~~ 237 (460)
T PRK07004 195 GTPTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYV 237 (460)
T ss_pred CccCCcHHhcccccCCCCCceEEEEeCCCCCccHHHHHHHHHH
Confidence 4789999999997 58899999999999999999987766553
No 423
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.23 E-value=0.13 Score=51.85 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=25.9
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.|-+|+..+|+|++|+||||| +.+|+..
T Consensus 34 ~~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl 62 (269)
T PRK14259 34 CDIPRGKVTALIGPSGCGKSTV-LRSLNRM 62 (269)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhcc
Confidence 6888999999999999999999 6888754
No 424
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=91.22 E-value=0.06 Score=53.93 Aligned_cols=38 Identities=21% Similarity=0.481 Sum_probs=32.7
Q ss_pred cccccccccc-cccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 148 TGIKAIDSIV-PIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 148 TGik~ID~l~-pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
-|++|+|... .+-+|+..+++||.|+||||+ ++.|...
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTl-fNlitG~ 53 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTL-FNLITGF 53 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceee-eeeeccc
Confidence 5889998775 999999999999999999999 6766643
No 425
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=91.19 E-value=0.13 Score=54.21 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=28.1
Q ss_pred ccccc-ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 152 AIDSI-VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 152 ~ID~l-~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+++-+ +.|.+|+..+|+|++|+||||| +.+|..-
T Consensus 20 ~L~~vsl~i~~Gei~gIiG~sGaGKSTL-lr~I~gl 54 (343)
T TIGR02314 20 ALNNVSLHVPAGQIYGVIGASGAGKSTL-IRCVNLL 54 (343)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHH-HHHHhcC
Confidence 44443 5789999999999999999999 6888764
No 426
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=91.19 E-value=0.13 Score=54.12 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=29.1
Q ss_pred ccccccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 153 IDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 153 ID~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+|.=+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 15 ~~vsl~i~~Ge~~~l~G~nGsGKSTL-l~~iaGl 47 (352)
T PRK11144 15 LTVNLTLPAQGITAIFGRSGAGKTSL-INAISGL 47 (352)
T ss_pred EEEEEEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 47777889999999999999999999 6888764
No 427
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=91.17 E-value=0.12 Score=51.40 Aligned_cols=30 Identities=17% Similarity=0.327 Sum_probs=25.8
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
=+.+-+|+..+|+|++|+||||| +.+|+..
T Consensus 16 sl~i~~Gei~~l~G~nGsGKSTL-l~~l~Gl 45 (248)
T PRK03695 16 SAEVRAGEILHLVGPNGAGKSTL-LARMAGL 45 (248)
T ss_pred EEEEcCCCEEEEECCCCCCHHHH-HHHHcCC
Confidence 35788999999999999999999 6777653
No 428
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=91.12 E-value=0.14 Score=51.24 Aligned_cols=29 Identities=31% Similarity=0.303 Sum_probs=25.7
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 42 l~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 70 (257)
T cd03288 42 AYIKPGQKVGICGRTGSGKSSL-SLAFFRM 70 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHHcc
Confidence 5788999999999999999999 6888764
No 429
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=91.11 E-value=0.13 Score=54.84 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=27.4
Q ss_pred ccccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 155 SIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 155 ~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.=+.+.+|+..+|+|++|+||||| +.+|+-.
T Consensus 33 vsl~i~~Ge~~~LlGpsGsGKSTL-Lr~IaGl 63 (375)
T PRK09452 33 LDLTINNGEFLTLLGPSGCGKTTV-LRLIAGF 63 (375)
T ss_pred eEEEEeCCCEEEEECCCCCcHHHH-HHHHhCC
Confidence 446889999999999999999999 6888864
No 430
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=91.07 E-value=0.43 Score=51.04 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=22.2
Q ss_pred ceeeecCCCCCccHHHHHHHHHhcCCCe
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQKNKNV 191 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~~~~~ 191 (515)
.+++.|++|||||++| ..++++.+..+
T Consensus 167 gvLL~GppGtGKT~lA-kaia~~~~~~~ 193 (389)
T PRK03992 167 GVLLYGPPGTGKTLLA-KAVAHETNATF 193 (389)
T ss_pred ceEEECCCCCChHHHH-HHHHHHhCCCE
Confidence 3899999999999995 88887766553
No 431
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.05 E-value=0.14 Score=51.95 Aligned_cols=34 Identities=29% Similarity=0.467 Sum_probs=28.1
Q ss_pred ccccc-ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 152 AIDSI-VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 152 ~ID~l-~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+++.+ +.+-+|+.++|+|++|+||||| +.+|...
T Consensus 22 ~l~~v~l~i~~Ge~~~I~G~nGsGKSTL-l~~l~Gl 56 (277)
T PRK13642 22 QLNGVSFSITKGEWVSIIGQNGSGKSTT-ARLIDGL 56 (277)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHH-HHHHhcC
Confidence 44444 5788999999999999999999 6888764
No 432
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.01 E-value=0.14 Score=52.07 Aligned_cols=32 Identities=28% Similarity=0.413 Sum_probs=27.6
Q ss_pred cccccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 154 DSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 154 D~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
|.=+.|.+|+.++|+|++|+||||| +.+|...
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 56 (279)
T PRK13650 25 DVSFHVKQGEWLSIIGHNGSGKSTT-VRLIDGL 56 (279)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHH-HHHHhcC
Confidence 3346889999999999999999999 6888765
No 433
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.01 E-value=0.14 Score=52.37 Aligned_cols=34 Identities=29% Similarity=0.500 Sum_probs=28.5
Q ss_pred ccccc-ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 152 AIDSI-VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 152 ~ID~l-~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+++.+ +.|.+|+.++|+|++|+||||| +.+|...
T Consensus 22 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTL-l~~l~Gl 56 (287)
T PRK13637 22 ALDNVNIEIEDGEFVGLIGHTGSGKSTL-IQHLNGL 56 (287)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHH-HHHHhcC
Confidence 44433 6888999999999999999999 6888865
No 434
>KOG0743|consensus
Probab=91.00 E-value=0.35 Score=52.39 Aligned_cols=59 Identities=20% Similarity=0.135 Sum_probs=36.1
Q ss_pred eeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecC-ChHHHHHHHHHHhhcCCCCcEEEEEeCCCC
Q psy2894 165 ELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQ-KISSIKKTANLLEKYGAMPYTIIVAATASD 230 (515)
Q Consensus 165 ~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGe-r~~ev~~~~~~l~~~~~~~~t~vv~~t~~~ 230 (515)
-++.||||||||++ +.+|+|.-+-|+ |..=+..- ...|.+.++.. .-.++|+|.-.-|.
T Consensus 238 YLLYGPPGTGKSS~-IaAmAn~L~ydI-ydLeLt~v~~n~dLr~LL~~-----t~~kSIivIEDIDc 297 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSF-IAAMANYLNYDI-YDLELTEVKLDSDLRHLLLA-----TPNKSILLIEDIDC 297 (457)
T ss_pred ceeeCCCCCCHHHH-HHHHHhhcCCce-EEeeeccccCcHHHHHHHHh-----CCCCcEEEEeeccc
Confidence 47899999999999 899999887775 33322221 12223333322 23466776655444
No 435
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.95 E-value=0.14 Score=53.23 Aligned_cols=34 Identities=26% Similarity=0.440 Sum_probs=28.7
Q ss_pred ccccc-ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 152 AIDSI-VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 152 ~ID~l-~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+++.+ +.|.+|+.++|+|++|+||||| +.+|...
T Consensus 41 ~L~~vsl~i~~Ge~~~I~G~nGsGKSTL-l~~L~Gl 75 (320)
T PRK13631 41 ALNNISYTFEKNKIYFIIGNSGSGKSTL-VTHFNGL 75 (320)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 44444 5889999999999999999999 6888864
No 436
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=90.94 E-value=0.14 Score=53.59 Aligned_cols=35 Identities=29% Similarity=0.460 Sum_probs=28.9
Q ss_pred ccccc-cccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 151 KAIDS-IVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 151 k~ID~-l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
++++. =+.|.+|+.++|+|++|+||||| +.+|+..
T Consensus 35 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL-lk~i~Gl 70 (331)
T PRK15079 35 KAVDGVTLRLYEGETLGVVGESGCGKSTF-ARAIIGL 70 (331)
T ss_pred EEEeeEEEEEcCCCEEEEECCCCCCHHHH-HHHHHCC
Confidence 45544 45899999999999999999999 5887764
No 437
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=90.90 E-value=1.1 Score=43.53 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=18.7
Q ss_pred cceeeecCCCCCccHHHHHHHHHhc
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
-.++|.|.||+||||++ ..++...
T Consensus 4 ~~i~i~G~~G~GKst~a-~~l~~~~ 27 (197)
T PRK12339 4 TIHFIGGIPGVGKTSIS-GYIARHR 27 (197)
T ss_pred eEEEEECCCCCCHHHHH-HHHHHhc
Confidence 46788999999999996 5566553
No 438
>PRK05541 adenylylsulfate kinase; Provisional
Probab=90.89 E-value=1.1 Score=41.87 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=23.2
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.-+|.-+.|.|.+|+||||++ ..+.+.
T Consensus 3 ~~~~~~~I~i~G~~GsGKst~a-~~l~~~ 30 (176)
T PRK05541 3 MKPNGYVIWITGLAGSGKTTIA-KALYER 30 (176)
T ss_pred CCCCCCEEEEEcCCCCCHHHHH-HHHHHH
Confidence 5668889999999999999996 666653
No 439
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.89 E-value=0.14 Score=53.54 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=26.2
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.|-+|++++|+|+.|+||||| +.+|....
T Consensus 103 ~~I~~Ge~v~IvG~~GsGKSTL-l~~L~g~~ 132 (329)
T PRK14257 103 LDIKRNKVTAFIGPSGCGKSTF-LRNLNQLN 132 (329)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhccc
Confidence 5788999999999999999999 68887643
No 440
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=90.87 E-value=1.6 Score=42.48 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=24.8
Q ss_pred cccccccccCCcceeeecCCCCCccHHHHHHHH
Q psy2894 152 AIDSIVPIGKGQRELIIGDRQTGKSSIAIDIII 184 (515)
Q Consensus 152 ~ID~l~pigrGqr~~I~g~~g~GKt~l~~~~i~ 184 (515)
.-|.-+.+..|...+|.|+.|+||||+ +.+|.
T Consensus 19 ~~~~~~~~~~~~~~~l~G~n~~GKstl-l~~i~ 50 (204)
T cd03282 19 PNDIYLTRGSSRFHIITGPNMSGKSTY-LKQIA 50 (204)
T ss_pred EeeeEEeeCCCcEEEEECCCCCCHHHH-HHHHH
Confidence 344555667889999999999999999 45543
No 441
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.81 E-value=0.16 Score=51.01 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=26.2
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+-+|+.++|+|++|+||||| +.+|...
T Consensus 28 ~~i~~Ge~~~I~G~nGsGKSTL-l~~l~Gl 56 (261)
T PRK14258 28 MEIYQSKVTAIIGPSGCGKSTF-LKCLNRM 56 (261)
T ss_pred EEEcCCcEEEEECCCCCCHHHH-HHHHhcc
Confidence 5788999999999999999999 6888864
No 442
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.75 E-value=0.18 Score=49.37 Aligned_cols=31 Identities=23% Similarity=0.554 Sum_probs=26.4
Q ss_pred cccccccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 154 DSIVPIGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 154 D~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
|.-+.|..|+-+.+.|++||||||| ++.++-
T Consensus 23 ~vsL~ia~ge~vv~lGpSGcGKTTL-Lnl~AG 53 (259)
T COG4525 23 DVSLTIASGELVVVLGPSGCGKTTL-LNLIAG 53 (259)
T ss_pred ccceeecCCCEEEEEcCCCccHHHH-HHHHhc
Confidence 4456788999999999999999999 677764
No 443
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.75 E-value=0.15 Score=51.65 Aligned_cols=30 Identities=30% Similarity=0.298 Sum_probs=26.8
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
=+.|-+|+..+|+|+.|+||||| +.+|...
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 51 (274)
T PRK13644 22 NLVIKKGEYIGIIGKNGSGKSTL-ALHLNGL 51 (274)
T ss_pred EEEEeCCCEEEEECCCCCCHHHH-HHHHhcC
Confidence 36788999999999999999999 6888875
No 444
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=90.75 E-value=0.14 Score=52.54 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=26.2
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|+.|+||||| +.+|...
T Consensus 23 ~~i~~Gei~~l~G~NGaGKTTL-l~~l~Gl 51 (301)
T TIGR03522 23 FEAQKGRIVGFLGPNGAGKSTT-MKIITGY 51 (301)
T ss_pred EEEeCCeEEEEECCCCCCHHHH-HHHHhCC
Confidence 5788999999999999999999 6888864
No 445
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=90.74 E-value=0.16 Score=51.58 Aligned_cols=29 Identities=28% Similarity=0.464 Sum_probs=26.3
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+-+|+-.+|+||.|+||||| +..|.+-
T Consensus 23 ~~i~~G~i~~iiGpNG~GKSTL-Lk~l~g~ 51 (258)
T COG1120 23 FSIPKGEITGILGPNGSGKSTL-LKCLAGL 51 (258)
T ss_pred EEecCCcEEEEECCCCCCHHHH-HHHHhcc
Confidence 5888999999999999999999 7888873
No 446
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=90.73 E-value=0.26 Score=49.76 Aligned_cols=46 Identities=17% Similarity=0.376 Sum_probs=32.7
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHh-cCCCeEEEEEEecCChHHHHHHHHHHhh
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQ-KNKNVTCIYVAIGQKISSIKKTANLLEK 214 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~-~~~~~~~V~~~iGer~~ev~~~~~~l~~ 214 (515)
+|-.+.+.|++|||||+|| ..|.|. ...++.|.|+- +.+++.+|+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa-~Ai~~~l~~~g~sv~f~~-------~~el~~~Lk~ 150 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLA-IAIGNELLKAGISVLFIT-------APDLLSKLKA 150 (254)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHHHHcCCeEEEEE-------HHHHHHHHHH
Confidence 8999999999999999996 555554 33355555554 4466666653
No 447
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.71 E-value=1.5 Score=48.36 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=17.1
Q ss_pred eeeecCCCCCccHHHHHHHHHh
Q psy2894 165 ELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 165 ~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.++.||+||||||+| ..+++.
T Consensus 39 ~Lf~GPpGtGKTTlA-~~lA~~ 59 (472)
T PRK14962 39 YIFAGPRGTGKTTVA-RILAKS 59 (472)
T ss_pred EEEECCCCCCHHHHH-HHHHHH
Confidence 689999999999996 555553
No 448
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=90.67 E-value=0.16 Score=53.42 Aligned_cols=35 Identities=20% Similarity=0.443 Sum_probs=29.4
Q ss_pred cccccc-ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 151 KAIDSI-VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 151 k~ID~l-~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.++|.+ +.+.+|+..+|+|+.|+||||| +.+|...
T Consensus 55 ~~l~~is~~i~~Gei~gLlGpNGaGKSTL-l~~L~Gl 90 (340)
T PRK13536 55 AVVNGLSFTVASGECFGLLGPNGAGKSTI-ARMILGM 90 (340)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHH-HHHHHcC
Confidence 355444 5899999999999999999999 7988875
No 449
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.67 E-value=0.16 Score=52.03 Aligned_cols=29 Identities=31% Similarity=0.462 Sum_probs=25.9
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.|-+|+..+|+|++|+||||| +.+|...
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 56 (290)
T PRK13634 28 VSIPSGSYVAIIGHTGSGKSTL-LQHLNGL 56 (290)
T ss_pred EEEcCCCEEEEECCCCCcHHHH-HHHHhcC
Confidence 5888999999999999999999 6888764
No 450
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=90.66 E-value=0.22 Score=50.50 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=26.2
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.|.+|+..+|+|++|+||||| +.+|...
T Consensus 31 ~~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl 59 (280)
T PRK13633 31 LEVKKGEFLVILGRNGSGKSTI-AKHMNAL 59 (280)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 4788999999999999999999 6888865
No 451
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=90.61 E-value=0.97 Score=46.27 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=20.4
Q ss_pred ceee-ecCCCCCccHHHHHHHHHhcCCCe
Q psy2894 164 RELI-IGDRQTGKSSIAIDIIINQKNKNV 191 (515)
Q Consensus 164 r~~I-~g~~g~GKt~l~~~~i~~~~~~~~ 191 (515)
...+ .|++|+|||+++ ..++++.+.++
T Consensus 44 ~~lll~G~~G~GKT~la-~~l~~~~~~~~ 71 (316)
T PHA02544 44 NMLLHSPSPGTGKTTVA-KALCNEVGAEV 71 (316)
T ss_pred eEEEeeCcCCCCHHHHH-HHHHHHhCccc
Confidence 4555 699999999994 77777665554
No 452
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.57 E-value=0.19 Score=50.52 Aligned_cols=32 Identities=22% Similarity=0.478 Sum_probs=28.0
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhcCC
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQKNK 189 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~~ 189 (515)
+.+-||+=.+|+||+|+||||| +..|+-+...
T Consensus 29 l~V~~Gei~~iiGgSGsGKStl-Lr~I~Gll~P 60 (263)
T COG1127 29 LDVPRGEILAILGGSGSGKSTL-LRLILGLLRP 60 (263)
T ss_pred eeecCCcEEEEECCCCcCHHHH-HHHHhccCCC
Confidence 4788999999999999999999 7999887543
No 453
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=90.55 E-value=1.6 Score=41.80 Aligned_cols=135 Identities=14% Similarity=0.082 Sum_probs=72.9
Q ss_pred ceeeecCCCCCccHHHHHHHHHhcCCCeEEEEE--EecC-ChHHHHHHHHHHh-hcCCCCcEEEEEeCCCCCHHhhHHHH
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQKNKNVTCIYV--AIGQ-KISSIKKTANLLE-KYGAMPYTIIVAATASDSASMQFISA 239 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~--~iGe-r~~ev~~~~~~l~-~~~~~~~t~vv~~t~~~~~~~r~~a~ 239 (515)
-+-|++++|.||||.|+...++....+..|.++ +=|. ...|..-+ +.+. ..-.+.....+ .+ +++.....++
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l-~~~~~~~~~~g~g~~~-~~--~~~~~~~~~~ 82 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAF-EPHGVEFQVMGTGFTW-ET--QNREADTAIA 82 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHH-HhcCcEEEECCCCCee-cC--CCcHHHHHHH
Confidence 567888999999999999988877666554322 2233 23343222 2220 00001111111 11 2233445556
Q ss_pred hhhhhhHHHHHHcCCcEEEEEechhHHHHHH-----HHHHHhcCCCCCCCC-CCCchhhhhhHHHHHhhcc
Q psy2894 240 YSGCTIGEYFRDHGKDALVVYDDLSKQAVAY-----RQISLLLKRPPGREA-YPGDIFYLHSRLLERSARV 304 (515)
Q Consensus 240 ~~a~~iAE~frd~G~~Vlli~Dsltr~a~A~-----reisl~l~~pp~~~g-ypg~vf~~~~rl~ERag~~ 304 (515)
..+...|......|.-=|||+|.++.-.... .=+.++-.+|+..+= .+| -+....|+|+|--+
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTG--R~~p~~l~e~AD~V 151 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITG--RGCPQDLLELADLV 151 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEEC--CCCCHHHHHhCcee
Confidence 6777777777777887888999988533322 224445556665321 111 13345677766544
No 454
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=90.51 E-value=0.17 Score=53.42 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=28.3
Q ss_pred cccccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 154 DSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 154 D~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
|.=+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTL-l~~iaGl 46 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTL-IRLIAGL 46 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 6567889999999999999999999 6888764
No 455
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=90.49 E-value=1 Score=38.43 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=18.7
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
...|.|++|+|||++++..+...
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 46799999999999986666654
No 456
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.48 E-value=0.19 Score=48.38 Aligned_cols=27 Identities=22% Similarity=0.530 Sum_probs=22.2
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHH
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIII 184 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~ 184 (515)
+-+-+|++++|+|++|+|||||+ ..++
T Consensus 31 L~v~~Ge~vaiVG~SGSGKSTLl-~vlA 57 (228)
T COG4181 31 LVVKRGETVAIVGPSGSGKSTLL-AVLA 57 (228)
T ss_pred EEecCCceEEEEcCCCCcHHhHH-HHHh
Confidence 35678999999999999999994 4443
No 457
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=90.45 E-value=0.18 Score=48.93 Aligned_cols=28 Identities=32% Similarity=0.602 Sum_probs=24.5
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
+++-+||..+|+|..|+|||||+ .|++-
T Consensus 34 FtL~~~QTlaiIG~NGSGKSTLa-kMlaG 61 (267)
T COG4167 34 FTLREGQTLAIIGENGSGKSTLA-KMLAG 61 (267)
T ss_pred EEecCCcEEEEEccCCCcHhHHH-HHHhc
Confidence 57889999999999999999996 66653
No 458
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.45 E-value=0.18 Score=48.86 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=27.9
Q ss_pred cccccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 154 DSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 154 D~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
|.=+.+.+ +..+|+|++|+||||| +.+|...
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTL-l~~l~G~ 46 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTL-LRCIAGL 46 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHH-HHHHhCC
Confidence 77789999 9999999999999999 6888764
No 459
>PRK07773 replicative DNA helicase; Validated
Probab=90.44 E-value=0.42 Score=56.53 Aligned_cols=63 Identities=14% Similarity=0.286 Sum_probs=49.1
Q ss_pred cccccccccccccc-cccCCcceeeecCCCCCccHHHHHHHHHhc-CCCeEEEEEEecCChHHHH
Q psy2894 144 EPLQTGIKAIDSIV-PIGKGQRELIIGDRQTGKSSIAIDIIINQK-NKNVTCIYVAIGQKISSIK 206 (515)
Q Consensus 144 epl~TGik~ID~l~-pigrGqr~~I~g~~g~GKt~l~~~~i~~~~-~~~~~~V~~~iGer~~ev~ 206 (515)
..+.||+..+|.++ -+-+|+=+.|-|.||+|||+++++.+.|.. +.+..+.|...-+...++.
T Consensus 198 ~Gi~TG~~~LD~l~~Gl~~G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~ 262 (886)
T PRK07773 198 RGVPTGFTELDAMTNGLHPGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLV 262 (886)
T ss_pred CCccCChhHhccccCCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHH
Confidence 46899999999987 477899999999999999999988877753 2344456666666666543
No 460
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=90.43 E-value=0.16 Score=53.85 Aligned_cols=30 Identities=23% Similarity=0.431 Sum_probs=26.4
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
=+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTL-L~~iaGl 52 (369)
T PRK11000 23 NLDIHEGEFVVFVGPSGCGKSTL-LRMIAGL 52 (369)
T ss_pred EEEEcCCCEEEEECCCCCcHHHH-HHHHhCC
Confidence 35788999999999999999999 6888764
No 461
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=90.43 E-value=0.12 Score=56.78 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=31.0
Q ss_pred CCcccccccc-ccccc-cccccCCcceeeecCCCCCccHHH
Q psy2894 141 SVSEPLQTGI-KAIDS-IVPIGKGQRELIIGDRQTGKSSIA 179 (515)
Q Consensus 141 ~~~epl~TGi-k~ID~-l~pigrGqr~~I~g~~g~GKt~l~ 179 (515)
.+.+++++.. +++|. -+.+-+|+.++|+|++|+|||||+
T Consensus 9 hi~r~Ie~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLL 49 (504)
T TIGR03238 9 YVKRKIQTDLERILVKFNKELPSSSLLFLCGSSGDGKSEIL 49 (504)
T ss_pred eechHHHHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHH
Confidence 4556677765 45554 458999999999999999999995
No 462
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=90.35 E-value=0.2 Score=47.99 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=18.8
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
|+.|+|+||+||||+| ..|++.
T Consensus 2 riiilG~pGaGK~T~A-~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLA-KKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHH-HHHHHH
Confidence 7899999999999997 666654
No 463
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=90.35 E-value=0.17 Score=52.83 Aligned_cols=36 Identities=28% Similarity=0.419 Sum_probs=29.6
Q ss_pred ccccccc-ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 150 IKAIDSI-VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 150 ik~ID~l-~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.+++|.+ +.|.+|+..+|+|++|+||||| +.+|+..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL-~~~l~Gl 56 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVS-SLAIMGL 56 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHH-HHHHHcC
Confidence 3456554 5999999999999999999999 5777764
No 464
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=90.26 E-value=0.19 Score=55.56 Aligned_cols=30 Identities=23% Similarity=0.475 Sum_probs=26.5
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
=+.|-+|++++|+|++|+||||| +..+...
T Consensus 355 sl~i~~G~~vaIvG~SGsGKSTL-l~lL~g~ 384 (529)
T TIGR02868 355 SLDLPPGERVAILGPSGSGKSTL-LMLLTGL 384 (529)
T ss_pred eEEEcCCCEEEEECCCCCCHHHH-HHHHhcC
Confidence 35889999999999999999999 5888764
No 465
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=90.22 E-value=0.19 Score=51.26 Aligned_cols=30 Identities=27% Similarity=0.483 Sum_probs=26.5
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.|-+|++++|+|+.|+||||| +.+|....
T Consensus 25 l~I~~Ge~~~IvG~nGsGKSTL-l~~L~gl~ 54 (275)
T cd03289 25 FSISPGQRVGLLGRTGSGKSTL-LSAFLRLL 54 (275)
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhhhc
Confidence 5889999999999999999999 68877643
No 466
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=90.19 E-value=0.18 Score=53.82 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=27.5
Q ss_pred ccccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 155 SIVPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 155 ~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
.=+.+-+|+..+|+|++|+||||| +.+|+...
T Consensus 38 vsl~i~~Ge~~~llGpsGsGKSTL-Lr~IaGl~ 69 (377)
T PRK11607 38 VSLTIYKGEIFALLGASGCGKSTL-LRMLAGFE 69 (377)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHH-HHHHhCCC
Confidence 336788999999999999999999 68888653
No 467
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=90.15 E-value=0.88 Score=51.92 Aligned_cols=108 Identities=18% Similarity=0.228 Sum_probs=53.6
Q ss_pred eeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhh
Q psy2894 165 ELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCT 244 (515)
Q Consensus 165 ~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~ 244 (515)
.++.|++|+||||+| ..+++.-+.....---.||.- ..+..+......+- +.+ ..++..-...++...-
T Consensus 41 yLf~Gp~GvGKTTlA-r~lAk~L~c~~~~~~~pCg~C-----~~C~~i~~g~~~D~-iei-daas~~~VddiR~li~--- 109 (647)
T PRK07994 41 YLFSGTRGVGKTTIA-RLLAKGLNCETGITATPCGEC-----DNCREIEQGRFVDL-IEI-DAASRTKVEDTRELLD--- 109 (647)
T ss_pred EEEECCCCCCHHHHH-HHHHHhhhhccCCCCCCCCCC-----HHHHHHHcCCCCCc-eee-cccccCCHHHHHHHHH---
Confidence 378999999999996 444442111100000134433 23344433222221 222 2222222333332221
Q ss_pred hHHHHHHcCCcEEEEEechhHHHH-HHHHHHHhcCCCCCC
Q psy2894 245 IGEYFRDHGKDALVVYDDLSKQAV-AYRQISLLLKRPPGR 283 (515)
Q Consensus 245 iAE~frd~G~~Vlli~Dsltr~a~-A~reisl~l~~pp~~ 283 (515)
-+.|-..+|+.-++|+|+.-++.. +.+.+-..+.|||..
T Consensus 110 ~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~ 149 (647)
T PRK07994 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 149 (647)
T ss_pred HHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCC
Confidence 122222468888899998776654 566665567777653
No 468
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.14 E-value=1.1 Score=47.35 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=17.0
Q ss_pred eeeecCCCCCccHHHHHHHHHh
Q psy2894 165 ELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 165 ~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.++.|++|+||||+| ..+++.
T Consensus 41 ~L~~Gp~G~GKTtla-~~la~~ 61 (363)
T PRK14961 41 WLLSGTRGVGKTTIA-RLLAKS 61 (363)
T ss_pred EEEecCCCCCHHHHH-HHHHHH
Confidence 589999999999996 555553
No 469
>PRK04841 transcriptional regulator MalT; Provisional
Probab=90.08 E-value=0.95 Score=52.92 Aligned_cols=49 Identities=16% Similarity=0.166 Sum_probs=33.1
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHH
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLL 212 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l 212 (515)
....=.+|.||+|.||||++ .....+.. . |+...+.+..++...|...|
T Consensus 30 ~~~~~~~v~apaG~GKTtl~-~~~~~~~~-~--~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 30 NNYRLVLVTSPAGYGKTTLI-SQWAAGKN-N--LGWYSLDESDNQPERFASYL 78 (903)
T ss_pred cCCCeEEEECCCCCCHHHHH-HHHHHhCC-C--eEEEecCcccCCHHHHHHHH
Confidence 34556899999999999995 44444433 3 55667777766666665544
No 470
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=90.08 E-value=0.18 Score=57.30 Aligned_cols=31 Identities=26% Similarity=0.536 Sum_probs=27.0
Q ss_pred ccccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 155 SIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 155 ~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.=+.|.+|++++|+|+.|+||||| +.+|+..
T Consensus 20 vs~~i~~Ge~v~LvG~NGsGKSTL-LkiL~G~ 50 (638)
T PRK10636 20 ATATINPGQKVGLVGKNGCGKSTL-LALLKNE 50 (638)
T ss_pred cEEEECCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 335889999999999999999999 6888764
No 471
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=90.07 E-value=0.3 Score=46.55 Aligned_cols=31 Identities=16% Similarity=0.370 Sum_probs=24.8
Q ss_pred ccCCcceeeecCCCCCccHHHHHHHHHhcCCC
Q psy2894 159 IGKGQRELIIGDRQTGKSSIAIDIIINQKNKN 190 (515)
Q Consensus 159 igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~ 190 (515)
+-+|..++|.|+.|+||||+ +..+...-..+
T Consensus 22 v~~g~~i~I~G~tGSGKTTl-l~aL~~~i~~~ 52 (186)
T cd01130 22 VEARKNILISGGTGSGKTTL-LNALLAFIPPD 52 (186)
T ss_pred HhCCCEEEEECCCCCCHHHH-HHHHHhhcCCC
Confidence 45699999999999999999 57777654343
No 472
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.96 E-value=0.2 Score=51.03 Aligned_cols=30 Identities=27% Similarity=0.421 Sum_probs=26.6
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
=+.|-+|+..+|+|+.|+||||| +.+|...
T Consensus 26 s~~i~~Ge~~~i~G~nGaGKSTL-l~~i~Gl 55 (283)
T PRK13636 26 NINIKKGEVTAILGGNGAGKSTL-FQNLNGI 55 (283)
T ss_pred EEEEcCCCEEEEECCCCCCHHHH-HHHHhcC
Confidence 36788999999999999999999 6888865
No 473
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=89.96 E-value=3.2 Score=37.56 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=18.5
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+++++|++|+|||+| +..+.++
T Consensus 1 ~i~~vG~~~~GKstL-i~~l~~~ 22 (167)
T cd04160 1 SVLILGLDNAGKTTF-LEQLKTL 22 (167)
T ss_pred CEEEEecCCCCHHHH-HHHHhhh
Confidence 578999999999999 6777654
No 474
>PHA00729 NTP-binding motif containing protein
Probab=89.88 E-value=0.14 Score=50.95 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=23.6
Q ss_pred ccccccccccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 151 KAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 151 k~ID~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
+.+..|...+. .+++|+|+||||||||| ..+++
T Consensus 7 ~~~~~l~~~~f-~nIlItG~pGvGKT~LA-~aLa~ 39 (226)
T PHA00729 7 KIVSAYNNNGF-VSAVIFGKQGSGKTTYA-LKVAR 39 (226)
T ss_pred HHHHHHhcCCe-EEEEEECCCCCCHHHHH-HHHHH
Confidence 44555555544 48999999999999997 44444
No 475
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=89.86 E-value=0.25 Score=54.55 Aligned_cols=35 Identities=23% Similarity=0.608 Sum_probs=29.2
Q ss_pred cccccc-ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 151 KAIDSI-VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 151 k~ID~l-~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
++++.+ +.+-.|+|+.|+|.+|+||||+ ++.+...
T Consensus 352 ~~L~~~~l~l~~GEkvAIlG~SGsGKSTl-lqLl~~~ 387 (573)
T COG4987 352 KALKNFNLTLAQGEKVAILGRSGSGKSTL-LQLLAGA 387 (573)
T ss_pred chhhccceeecCCCeEEEECCCCCCHHHH-HHHHHhc
Confidence 355544 4899999999999999999999 6888864
No 476
>PLN03073 ABC transporter F family; Provisional
Probab=89.84 E-value=0.19 Score=58.12 Aligned_cols=31 Identities=23% Similarity=0.412 Sum_probs=27.0
Q ss_pred cccccccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 154 DSIVPIGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 154 D~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
|.=+.|..|+|++|+|+.|+||||| +.+|..
T Consensus 195 ~isl~i~~Ge~~gLvG~NGsGKSTL-Lr~l~g 225 (718)
T PLN03073 195 DASVTLAFGRHYGLVGRNGTGKTTF-LRYMAM 225 (718)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHH-HHHHcC
Confidence 4456899999999999999999999 688764
No 477
>KOG0727|consensus
Probab=89.77 E-value=0.5 Score=47.90 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=27.0
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEE
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIY 195 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~ 195 (515)
.-+-+++.||||||||.|+ ...+|...+.++-|.
T Consensus 188 pprgvllygppg~gktml~-kava~~t~a~firvv 221 (408)
T KOG0727|consen 188 PPRGVLLYGPPGTGKTMLA-KAVANHTTAAFIRVV 221 (408)
T ss_pred CCcceEEeCCCCCcHHHHH-HHHhhccchheeeec
Confidence 3456899999999999995 888888777765443
No 478
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=89.74 E-value=0.32 Score=50.25 Aligned_cols=30 Identities=13% Similarity=0.387 Sum_probs=26.8
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.|-+|+..+|+|+.|+||||| +.+|....
T Consensus 28 l~i~~Gei~gllGpNGaGKSTL-l~~l~Gl~ 57 (306)
T PRK13537 28 FHVQRGECFGLLGPNGAGKTTT-LRMLLGLT 57 (306)
T ss_pred EEEeCCcEEEEECCCCCCHHHH-HHHHhcCC
Confidence 5788999999999999999999 78888753
No 479
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=89.73 E-value=0.21 Score=53.03 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=26.5
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
=+.|.+|+..+|+|++|+||||| +.+|+-.
T Consensus 25 sl~i~~Ge~~~llGpsGsGKSTL-Lr~iaGl 54 (362)
T TIGR03258 25 SLEIEAGELLALIGKSGCGKTTL-LRAIAGF 54 (362)
T ss_pred EEEECCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 35788999999999999999999 7888864
No 480
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=89.71 E-value=0.4 Score=48.37 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=24.6
Q ss_pred ccCCcceeeecCCCCCccHHHHHHHHHhcCCCe
Q psy2894 159 IGKGQRELIIGDRQTGKSSIAIDIIINQKNKNV 191 (515)
Q Consensus 159 igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~ 191 (515)
+..|..+++.|++|||||++| ..+++..+..+
T Consensus 18 l~~g~~vLL~G~~GtGKT~lA-~~la~~lg~~~ 49 (262)
T TIGR02640 18 LKSGYPVHLRGPAGTGKTTLA-MHVARKRDRPV 49 (262)
T ss_pred HhcCCeEEEEcCCCCCHHHHH-HHHHHHhCCCE
Confidence 345889999999999999996 66666544444
No 481
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=89.68 E-value=1.5 Score=40.20 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=15.8
Q ss_pred eeeecCCCCCccHHHHHHHHH
Q psy2894 165 ELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 165 ~~I~g~~g~GKt~l~~~~i~~ 185 (515)
+.|.|.+|+||||++ ..+..
T Consensus 2 i~i~G~~GsGKSTla-~~L~~ 21 (149)
T cd02027 2 IWLTGLSGSGKSTIA-RALEE 21 (149)
T ss_pred EEEEcCCCCCHHHHH-HHHHH
Confidence 578999999999996 44443
No 482
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=89.67 E-value=0.28 Score=46.56 Aligned_cols=26 Identities=19% Similarity=0.456 Sum_probs=21.7
Q ss_pred CcceeeecCCCCCccHHHHHHHHHhcC
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQKN 188 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~~~ 188 (515)
|+.+.|+|++|+||||| +.+++....
T Consensus 2 g~~i~l~G~sGsGKsTl-~~~l~~~~~ 27 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSL-LAALRQREQ 27 (186)
T ss_pred CcEEEEECCCCCCHHHH-HHHHhccCC
Confidence 78899999999999999 577765543
No 483
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=89.65 E-value=0.59 Score=50.87 Aligned_cols=36 Identities=28% Similarity=0.372 Sum_probs=26.5
Q ss_pred cceeeecCCCCCccHHHHHHHHHhc---CCCeEEEEEEec
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQK---NKNVTCIYVAIG 199 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~~---~~~~~~V~~~iG 199 (515)
..+.|.|++|+|||+| +..|.+.. ..+..++|+-+.
T Consensus 149 ~~l~l~G~~G~GKThL-~~ai~~~~~~~~~~~~v~yi~~~ 187 (450)
T PRK00149 149 NPLFIYGGVGLGKTHL-LHAIGNYILEKNPNAKVVYVTSE 187 (450)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHHhCCCCeEEEEEHH
Confidence 4588999999999999 47777753 335666777554
No 484
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=89.58 E-value=0.25 Score=47.75 Aligned_cols=23 Identities=26% Similarity=0.622 Sum_probs=16.8
Q ss_pred Ccc-eeeecCCCCCccHHHHHHHHH
Q psy2894 162 GQR-ELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 162 Gqr-~~I~g~~g~GKt~l~~~~i~~ 185 (515)
+.| ..|.|++|||||++ +..+..
T Consensus 17 ~~~~~~l~G~aGtGKT~~-l~~~~~ 40 (196)
T PF13604_consen 17 GDRVSVLQGPAGTGKTTL-LKALAE 40 (196)
T ss_dssp TCSEEEEEESTTSTHHHH-HHHHHH
T ss_pred CCeEEEEEECCCCCHHHH-HHHHHH
Confidence 444 55669999999998 465554
No 485
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=89.54 E-value=0.2 Score=56.85 Aligned_cols=31 Identities=23% Similarity=0.471 Sum_probs=26.8
Q ss_pred ccccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 155 SIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 155 ~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.=+.|.+|++++|+|+.|+||||| +.+|+..
T Consensus 22 is~~i~~Ge~v~LvG~NGsGKSTL-LriiaG~ 52 (635)
T PRK11147 22 AELHIEDNERVCLVGRNGAGKSTL-MKILNGE 52 (635)
T ss_pred cEEEECCCCEEEEECCCCCCHHHH-HHHHcCC
Confidence 345788999999999999999999 6888764
No 486
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=89.52 E-value=0.31 Score=43.60 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=22.5
Q ss_pred eeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecC
Q psy2894 165 ELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQ 200 (515)
Q Consensus 165 ~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGe 200 (515)
+++.|++|+|||+|+ ..++...+..+ +.+.+..
T Consensus 2 vlL~G~~G~GKt~l~-~~la~~~~~~~--~~i~~~~ 34 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA-RELAALLGRPV--IRINCSS 34 (139)
T ss_dssp EEEEESSSSSHHHHH-HHHHHHHTCEE--EEEE-TT
T ss_pred EEEECCCCCCHHHHH-HHHHHHhhcce--EEEEecc
Confidence 689999999999995 77766554443 3444443
No 487
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=89.51 E-value=0.21 Score=53.81 Aligned_cols=29 Identities=17% Similarity=0.397 Sum_probs=26.1
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+..+|+|+.|+||||| +.+|...
T Consensus 24 ~~i~~Geiv~liGpNGaGKSTL-Lk~LaGl 52 (402)
T PRK09536 24 LSVREGSLVGLVGPNGAGKTTL-LRAINGT 52 (402)
T ss_pred EEECCCCEEEEECCCCchHHHH-HHHHhcC
Confidence 5788999999999999999999 7888864
No 488
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=89.45 E-value=0.23 Score=55.48 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=28.6
Q ss_pred ccccc-ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 152 AIDSI-VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 152 ~ID~l-~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+++.+ +.+..|++++|+|+.|+||||| +.+|+..
T Consensus 22 il~~vs~~i~~Ge~~~iiG~NGsGKSTL-lk~i~G~ 56 (556)
T PRK11819 22 ILKDISLSFFPGAKIGVLGLNGAGKSTL-LRIMAGV 56 (556)
T ss_pred eeeCceEEECCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 44444 5899999999999999999999 6888764
No 489
>PRK14531 adenylate kinase; Provisional
Probab=89.44 E-value=0.32 Score=46.12 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=24.0
Q ss_pred cceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecC
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQ 200 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGe 200 (515)
+|+.|+|+||+||||++ ..++..- + +.++.+|+
T Consensus 3 ~~i~i~G~pGsGKsT~~-~~la~~~--g--~~~is~gd 35 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQA-ARLCAAH--G--LRHLSTGD 35 (183)
T ss_pred cEEEEECCCCCCHHHHH-HHHHHHh--C--CCeEeccc
Confidence 68999999999999995 6666543 2 23456663
No 490
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=89.43 E-value=0.26 Score=54.98 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=0.0
Q ss_pred cccccccCCcceeeecCCCCCccHHHHHHHHHhcCCC
Q psy2894 154 DSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKN 190 (515)
Q Consensus 154 D~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~ 190 (515)
|.=+.|-+|+|++|+|+.|+||||| +.+|+.+....
T Consensus 340 ~~s~~i~~g~riaiiG~NG~GKSTL-lk~l~g~~~~~ 375 (530)
T COG0488 340 DLSFRIDRGDRIAIVGPNGAGKSTL-LKLLAGELGPL 375 (530)
T ss_pred CceEEecCCCEEEEECCCCCCHHHH-HHHHhhhcccC
No 491
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=89.43 E-value=1.3 Score=49.24 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=18.1
Q ss_pred cceeeecCCCCCccHHHHHHHHH
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
+-.++.|++|+|||++| ..+++
T Consensus 44 ~a~Lf~Gp~G~GKTT~A-rilAk 65 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSA-RIIAK 65 (507)
T ss_pred ceEEEECCCCCCHHHHH-HHHHH
Confidence 56899999999999996 55554
No 492
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=89.43 E-value=3.6 Score=37.73 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=19.7
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++|+|.+|+|||+| ++.+.+..
T Consensus 1 ~v~v~G~~~~GKStl-ln~l~~~~ 23 (189)
T cd00881 1 NVGIAGHVDHGKTTL-TERLLYVT 23 (189)
T ss_pred CEEEEeCCCCCHHHH-HHHHHHhc
Confidence 578999999999999 68887654
No 493
>PRK06620 hypothetical protein; Validated
Probab=89.41 E-value=0.91 Score=44.55 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=19.2
Q ss_pred cceeeecCCCCCccHHHHHHHHHhc
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
..+.|.|++|+|||+|+ ..+.+..
T Consensus 45 ~~l~l~Gp~G~GKThLl-~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLT-KIWQNLS 68 (214)
T ss_pred ceEEEECCCCCCHHHHH-HHHHhcc
Confidence 35899999999999994 6666554
No 494
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=89.41 E-value=0.22 Score=54.93 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=26.9
Q ss_pred ccccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 155 SIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 155 ~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.=+.+.+|++.+|+|++|+||||| +.+|+..
T Consensus 19 is~~i~~Ge~~~iiG~nGsGKSTL-l~~l~Gl 49 (520)
T TIGR03269 19 ISFTIEEGEVLGILGRSGAGKSVL-MHVLRGM 49 (520)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHH-HHHHhhc
Confidence 335888999999999999999999 6888775
No 495
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=89.40 E-value=0.23 Score=54.98 Aligned_cols=34 Identities=32% Similarity=0.536 Sum_probs=28.2
Q ss_pred ccccc-ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 152 AIDSI-VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 152 ~ID~l-~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+++.+ +.|.+|++++|+|+.|+||||| +.+|...
T Consensus 16 il~~vsl~i~~Ge~~~liG~NGsGKSTL-l~~l~Gl 50 (530)
T PRK15064 16 LFENISVKFGGGNRYGLIGANGCGKSTF-MKILGGD 50 (530)
T ss_pred eEeCCEEEECCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 44443 5899999999999999999999 6888764
No 496
>KOG0060|consensus
Probab=89.35 E-value=0.27 Score=54.73 Aligned_cols=47 Identities=28% Similarity=0.408 Sum_probs=37.4
Q ss_pred cccCCCcccccccccccc-ccccccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 137 ISRQSVSEPLQTGIKAID-SIVPIGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 137 ~~R~~~~epl~TGik~ID-~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
.++-++..|=. |...|+ +-+-+-.||..+|.||+|+|||+| +.++.-
T Consensus 436 ~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSL-lRvlgg 483 (659)
T KOG0060|consen 436 FEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSL-LRVLGG 483 (659)
T ss_pred eeeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHH-HHHHhc
Confidence 44555566655 889998 556899999999999999999999 566653
No 497
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=89.27 E-value=0.22 Score=52.89 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=26.0
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.|.+|+..+|+|++|+||||| +.+|..-
T Consensus 14 ~~i~~Gei~~l~G~sGsGKSTL-Lr~L~Gl 42 (363)
T TIGR01186 14 LAIAKGEIFVIMGLSGSGKSTT-VRMLNRL 42 (363)
T ss_pred EEEcCCCEEEEECCCCChHHHH-HHHHhCC
Confidence 5788999999999999999999 6888764
No 498
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=89.24 E-value=2.7 Score=39.94 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=19.6
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+++|+|++|+|||+| +..+.+.
T Consensus 43 ~I~iiG~~g~GKStL-l~~l~~~ 64 (204)
T cd01878 43 TVALVGYTNAGKSTL-FNALTGA 64 (204)
T ss_pred eEEEECCCCCCHHHH-HHHHhcc
Confidence 789999999999999 6887765
No 499
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.18 E-value=1.3 Score=52.16 Aligned_cols=33 Identities=15% Similarity=0.371 Sum_probs=25.0
Q ss_pred HcCCcEEEEEechhHHHH-HHHHHHHhcCCCCCC
Q psy2894 251 DHGKDALVVYDDLSKQAV-AYRQISLLLKRPPGR 283 (515)
Q Consensus 251 d~G~~Vlli~Dsltr~a~-A~reisl~l~~pp~~ 283 (515)
..|+..++|+|..-++.. |++.+=..+.+||+.
T Consensus 116 ~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~ 149 (944)
T PRK14949 116 SRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEH 149 (944)
T ss_pred hcCCcEEEEEechHhcCHHHHHHHHHHHhccCCC
Confidence 358899999999888854 666666678887764
No 500
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=89.16 E-value=0.35 Score=45.65 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=27.6
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHhcCCC
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKN 190 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~ 190 (515)
-++|.+|.-+-+.||+|+||||| +.-|+-.-..+
T Consensus 22 n~Tia~GeivtlMGPSGcGKSTL-ls~~~G~La~~ 55 (213)
T COG4136 22 NFTIAKGEIVTLMGPSGCGKSTL-LSWMIGALAGQ 55 (213)
T ss_pred eEEecCCcEEEEECCCCccHHHH-HHHHHhhcccC
Confidence 35899999999999999999999 57776543333
Done!