Query psy2894
Match_columns 515
No_of_seqs 267 out of 2127
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 20:20:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2894.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2894hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oaa_A ATP synthase subunit al 100.0 4E-141 1E-145 1129.8 49.9 511 1-511 1-511 (513)
2 2r9v_A ATP synthase subunit al 100.0 8E-136 3E-140 1092.1 50.0 500 2-512 14-514 (515)
3 2ck3_A ATP synthase subunit al 100.0 2E-135 6E-140 1090.6 50.2 500 2-512 2-509 (510)
4 1fx0_A ATP synthase alpha chai 100.0 9E-136 3E-140 1092.2 44.6 501 1-512 2-502 (507)
5 2qe7_A ATP synthase subunit al 100.0 1E-135 5E-140 1089.9 44.3 500 1-513 1-500 (502)
6 3vr4_D V-type sodium ATPase su 100.0 6E-117 2E-121 937.6 39.1 432 26-475 10-460 (465)
7 3gqb_B V-type ATP synthase bet 100.0 6E-116 2E-120 929.4 37.9 431 25-474 5-461 (464)
8 2c61_A A-type ATP synthase non 100.0 4E-116 1E-120 935.8 36.2 437 22-476 8-462 (469)
9 2ck3_D ATP synthase subunit be 100.0 3E-108 1E-112 875.3 46.1 425 24-463 10-460 (482)
10 1fx0_B ATP synthase beta chain 100.0 1E-108 4E-113 881.5 40.8 422 27-463 19-473 (498)
11 3vr4_A V-type sodium ATPase ca 100.0 6E-108 2E-112 883.5 34.5 441 28-479 10-567 (600)
12 3mfy_A V-type ATP synthase alp 100.0 3E-109 9E-114 891.2 17.2 440 27-479 3-560 (588)
13 3gqb_A V-type ATP synthase alp 100.0 2E-107 8E-112 876.1 25.6 435 28-477 3-550 (578)
14 1sky_E F1-ATPase, F1-ATP synth 100.0 2E-102 8E-107 831.5 41.9 421 28-463 3-452 (473)
15 3l0o_A Transcription terminati 100.0 1.5E-77 5E-82 622.9 18.4 303 80-410 96-404 (427)
16 2dpy_A FLII, flagellum-specifi 100.0 4.8E-75 1.7E-79 620.4 32.0 413 24-452 6-435 (438)
17 3ice_A Transcription terminati 100.0 1.4E-73 4.7E-78 594.1 17.8 257 135-413 143-406 (422)
18 2obl_A ESCN; ATPase, hydrolase 100.0 1.4E-70 4.7E-75 570.0 25.3 340 94-451 2-345 (347)
19 2zts_A Putative uncharacterize 98.0 4.2E-05 1.4E-09 72.8 11.6 64 145-208 11-77 (251)
20 3io5_A Recombination and repai 97.9 1.1E-05 3.8E-10 82.5 6.4 110 144-267 5-124 (333)
21 2zr9_A Protein RECA, recombina 97.7 5.1E-05 1.7E-09 78.2 7.6 111 143-267 39-152 (349)
22 3hr8_A Protein RECA; alpha and 97.7 5.5E-05 1.9E-09 78.3 7.0 110 144-267 40-152 (356)
23 2z43_A DNA repair and recombin 97.6 7.4E-05 2.5E-09 75.8 6.8 117 143-269 86-218 (324)
24 1u94_A RECA protein, recombina 97.6 9.8E-05 3.4E-09 76.4 7.6 110 143-267 41-154 (356)
25 4a74_A DNA repair and recombin 97.6 0.0002 6.7E-09 67.4 9.1 41 144-185 5-47 (231)
26 2cvh_A DNA repair and recombin 97.6 4.5E-05 1.5E-09 71.4 4.4 52 146-200 2-55 (220)
27 1xp8_A RECA protein, recombina 97.5 0.00013 4.3E-09 75.8 7.5 111 143-267 52-165 (366)
28 1v5w_A DMC1, meiotic recombina 97.5 0.00038 1.3E-08 71.2 10.8 120 143-269 101-234 (343)
29 1n0w_A DNA repair protein RAD5 97.4 0.00026 8.7E-09 67.2 7.9 115 144-268 4-133 (243)
30 2i1q_A DNA repair and recombin 97.4 0.00025 8.4E-09 71.5 7.9 120 143-269 77-219 (322)
31 2dr3_A UPF0273 protein PH0284; 97.3 0.00015 5.1E-09 68.9 4.7 65 144-208 3-69 (247)
32 2w0m_A SSO2452; RECA, SSPF, un 97.3 0.00016 5.5E-09 67.7 4.5 65 144-209 3-70 (235)
33 3bh0_A DNAB-like replicative h 97.1 0.0019 6.5E-08 65.2 10.7 64 144-207 49-113 (315)
34 3lda_A DNA repair protein RAD5 97.1 0.0015 5.3E-08 68.5 9.8 57 143-199 157-221 (400)
35 2ehv_A Hypothetical protein PH 97.1 0.00038 1.3E-08 66.2 4.5 63 144-207 10-76 (251)
36 3cmw_A Protein RECA, recombina 97.0 0.00048 1.7E-08 83.7 6.1 114 142-270 11-128 (1706)
37 3cmu_A Protein RECA, recombina 97.0 0.0008 2.7E-08 82.8 7.2 115 141-270 10-128 (2050)
38 1pzn_A RAD51, DNA repair and r 96.9 0.0015 5.2E-08 67.0 7.4 120 143-269 110-246 (349)
39 3bs4_A Uncharacterized protein 96.8 0.0012 4.1E-08 65.4 5.6 66 146-211 3-70 (260)
40 3cmw_A Protein RECA, recombina 96.8 0.0013 4.4E-08 80.0 6.7 110 143-267 361-474 (1706)
41 3cmu_A Protein RECA, recombina 96.7 0.0018 6.3E-08 79.7 7.4 110 143-267 361-474 (2050)
42 2r6a_A DNAB helicase, replicat 96.7 0.0081 2.8E-07 63.6 11.3 63 144-206 184-248 (454)
43 1q57_A DNA primase/helicase; d 96.6 0.005 1.7E-07 65.9 9.2 64 144-207 222-288 (503)
44 1cr0_A DNA primase/helicase; R 96.6 0.0071 2.4E-07 59.7 9.5 57 145-201 16-75 (296)
45 2q6t_A DNAB replication FORK h 96.5 0.0098 3.4E-07 62.7 10.2 63 144-206 181-245 (444)
46 4a1f_A DNAB helicase, replicat 96.4 0.011 3.8E-07 60.6 9.7 63 144-206 27-90 (338)
47 2v1u_A Cell division control p 96.3 0.0069 2.4E-07 60.9 7.4 95 159-269 41-145 (387)
48 1nlf_A Regulatory protein REPA 96.1 0.0059 2E-07 59.9 5.6 44 142-185 9-53 (279)
49 1w5s_A Origin recognition comp 96.0 0.0099 3.4E-07 60.6 7.1 93 161-267 49-151 (412)
50 1fnn_A CDC6P, cell division co 95.9 0.022 7.4E-07 57.5 8.8 93 160-266 40-137 (389)
51 2qby_A CDC6 homolog 1, cell di 95.8 0.0092 3.1E-07 59.9 5.6 95 160-267 43-141 (386)
52 3bgw_A DNAB-like replicative h 95.7 0.006 2E-07 64.7 3.9 64 144-207 178-242 (444)
53 3bos_A Putative DNA replicatio 95.6 0.0034 1.2E-07 58.7 1.4 48 151-199 41-89 (242)
54 2vhj_A Ntpase P4, P4; non- hyd 95.4 0.022 7.5E-07 58.2 6.6 54 142-198 102-156 (331)
55 1zp6_A Hypothetical protein AT 95.2 0.01 3.5E-07 54.1 3.5 34 156-190 3-36 (191)
56 1c9k_A COBU, adenosylcobinamid 95.1 0.0069 2.3E-07 56.8 1.7 86 165-270 2-89 (180)
57 1jbk_A CLPB protein; beta barr 95.0 0.029 9.9E-07 49.8 5.7 26 160-186 41-66 (195)
58 3ec2_A DNA replication protein 94.8 0.012 4.1E-07 53.5 2.5 39 158-197 34-74 (180)
59 4gp7_A Metallophosphoesterase; 94.8 0.025 8.4E-07 51.5 4.6 24 157-181 4-27 (171)
60 1l8q_A Chromosomal replication 94.7 0.026 9.1E-07 56.2 5.1 38 161-199 36-74 (324)
61 1tf7_A KAIC; homohexamer, hexa 94.5 0.02 6.8E-07 61.7 3.8 55 144-201 19-78 (525)
62 3te6_A Regulatory protein SIR3 94.5 0.028 9.6E-07 57.1 4.6 89 159-267 42-145 (318)
63 1zu4_A FTSY; GTPase, signal re 94.3 0.28 9.4E-06 49.6 11.5 46 157-203 100-146 (320)
64 1njg_A DNA polymerase III subu 94.1 0.054 1.9E-06 49.7 5.5 23 164-187 47-69 (250)
65 1znw_A Guanylate kinase, GMP k 94.1 0.022 7.5E-07 53.2 2.8 29 158-187 16-44 (207)
66 4eun_A Thermoresistant glucoki 94.0 0.026 8.8E-07 52.4 2.9 41 146-187 13-53 (200)
67 2p65_A Hypothetical protein PF 93.9 0.06 2.1E-06 47.8 5.2 26 160-186 41-66 (187)
68 1z6g_A Guanylate kinase; struc 93.9 0.025 8.6E-07 53.6 2.8 30 157-187 18-47 (218)
69 2p5t_B PEZT; postsegregational 93.9 0.34 1.2E-05 46.6 10.8 31 157-188 27-57 (253)
70 3dm5_A SRP54, signal recogniti 93.8 0.25 8.4E-06 52.4 10.4 52 160-212 98-150 (443)
71 1tf7_A KAIC; homohexamer, hexa 93.8 0.04 1.4E-06 59.3 4.4 60 144-204 261-323 (525)
72 3tr0_A Guanylate kinase, GMP k 93.8 0.029 1E-06 51.5 2.9 27 159-186 4-30 (205)
73 2kjq_A DNAA-related protein; s 93.8 0.046 1.6E-06 48.9 4.0 25 161-186 35-59 (149)
74 3pfi_A Holliday junction ATP-d 93.7 0.062 2.1E-06 53.6 5.2 28 163-191 56-83 (338)
75 2z4s_A Chromosomal replication 93.6 0.099 3.4E-06 55.0 6.9 37 162-199 130-169 (440)
76 3uk6_A RUVB-like 2; hexameric 93.6 0.23 7.8E-06 49.9 9.4 35 162-197 70-104 (368)
77 2qby_B CDC6 homolog 3, cell di 93.6 0.067 2.3E-06 53.9 5.4 40 160-200 43-91 (384)
78 3kl4_A SRP54, signal recogniti 93.4 0.51 1.7E-05 49.8 12.0 52 160-212 95-147 (433)
79 2cbz_A Multidrug resistance-as 93.3 0.03 1E-06 54.2 2.0 29 157-186 26-54 (237)
80 3tif_A Uncharacterized ABC tra 93.2 0.029 1E-06 54.1 1.9 36 151-187 19-55 (235)
81 1pui_A ENGB, probable GTP-bind 93.1 0.024 8.2E-07 52.1 1.1 33 151-185 16-48 (210)
82 1htw_A HI0065; nucleotide-bind 93.1 0.042 1.4E-06 49.9 2.7 29 157-186 28-56 (158)
83 3c8u_A Fructokinase; YP_612366 93.0 0.046 1.6E-06 51.0 2.9 27 159-186 19-45 (208)
84 2j41_A Guanylate kinase; GMP, 93.0 0.048 1.6E-06 50.0 2.9 29 158-187 2-30 (207)
85 2x8a_A Nuclear valosin-contain 93.0 0.055 1.9E-06 53.3 3.5 30 158-190 42-71 (274)
86 4g1u_C Hemin import ATP-bindin 92.9 0.034 1.1E-06 54.8 1.9 35 151-186 25-60 (266)
87 1b0u_A Histidine permease; ABC 92.9 0.036 1.2E-06 54.4 2.0 30 157-187 27-56 (262)
88 2qen_A Walker-type ATPase; unk 92.9 0.12 4.1E-06 50.9 5.9 33 162-199 31-63 (350)
89 1j8m_F SRP54, signal recogniti 92.8 0.41 1.4E-05 47.8 9.7 46 160-206 96-142 (297)
90 2pcj_A ABC transporter, lipopr 92.8 0.033 1.1E-06 53.3 1.6 30 157-187 25-54 (224)
91 2v9p_A Replication protein E1; 92.8 0.04 1.4E-06 55.6 2.2 32 155-187 119-150 (305)
92 1lvg_A Guanylate kinase, GMP k 92.8 0.047 1.6E-06 50.8 2.6 25 161-186 3-27 (198)
93 3pvs_A Replication-associated 92.8 0.15 5.1E-06 53.9 6.8 31 160-191 48-78 (447)
94 1vpl_A ABC transporter, ATP-bi 92.7 0.039 1.3E-06 54.1 2.0 30 157-187 36-65 (256)
95 3gfo_A Cobalt import ATP-bindi 92.7 0.036 1.2E-06 55.0 1.8 34 152-186 23-57 (275)
96 2olj_A Amino acid ABC transpor 92.7 0.039 1.3E-06 54.4 2.0 31 156-187 44-74 (263)
97 1mv5_A LMRA, multidrug resista 92.7 0.036 1.2E-06 53.6 1.8 29 157-186 23-51 (243)
98 2ghi_A Transport protein; mult 92.7 0.039 1.3E-06 54.1 2.0 29 157-186 41-69 (260)
99 1ixz_A ATP-dependent metallopr 92.7 0.075 2.6E-06 50.8 4.0 31 158-191 47-77 (254)
100 4b4t_J 26S protease regulatory 92.6 0.094 3.2E-06 55.0 4.9 27 165-192 185-211 (405)
101 3h4m_A Proteasome-activating n 92.6 0.38 1.3E-05 46.5 9.0 35 160-197 49-83 (285)
102 3lnc_A Guanylate kinase, GMP k 92.6 0.045 1.5E-06 51.8 2.2 26 158-184 23-48 (231)
103 4b4t_K 26S protease regulatory 92.6 0.092 3.1E-06 55.5 4.7 27 165-192 209-235 (428)
104 1g6h_A High-affinity branched- 92.5 0.042 1.5E-06 53.6 2.0 30 157-187 28-57 (257)
105 2d2e_A SUFC protein; ABC-ATPas 92.5 0.047 1.6E-06 53.1 2.2 29 157-186 24-52 (250)
106 2ff7_A Alpha-hemolysin translo 92.4 0.068 2.3E-06 51.9 3.3 30 157-187 30-59 (247)
107 2yz2_A Putative ABC transporte 92.4 0.044 1.5E-06 53.8 2.0 30 157-187 28-57 (266)
108 2zu0_C Probable ATP-dependent 92.4 0.05 1.7E-06 53.5 2.4 29 157-186 41-69 (267)
109 2pze_A Cystic fibrosis transme 92.4 0.071 2.4E-06 51.1 3.3 30 157-187 29-58 (229)
110 1sgw_A Putative ABC transporte 92.3 0.074 2.5E-06 50.7 3.3 31 157-188 30-60 (214)
111 2nq2_C Hypothetical ABC transp 92.3 0.043 1.5E-06 53.6 1.8 30 157-187 26-55 (253)
112 1kgd_A CASK, peripheral plasma 92.3 0.065 2.2E-06 48.9 2.8 26 161-187 4-29 (180)
113 1ji0_A ABC transporter; ATP bi 92.2 0.046 1.6E-06 52.8 1.7 30 157-187 27-56 (240)
114 2ihy_A ABC transporter, ATP-bi 92.1 0.046 1.6E-06 54.3 1.7 30 157-187 42-71 (279)
115 2qi9_C Vitamin B12 import ATP- 92.1 0.047 1.6E-06 53.3 1.7 30 157-187 21-50 (249)
116 2orw_A Thymidine kinase; TMTK, 92.0 0.1 3.5E-06 48.3 3.9 35 161-195 2-36 (184)
117 3b85_A Phosphate starvation-in 92.0 0.064 2.2E-06 50.9 2.5 27 159-186 19-45 (208)
118 1vma_A Cell division protein F 92.0 0.37 1.3E-05 48.4 8.2 44 158-202 100-144 (306)
119 1z6t_A APAF-1, apoptotic prote 91.9 0.21 7.3E-06 53.7 6.8 40 160-201 145-190 (591)
120 2eyu_A Twitching motility prot 91.9 0.064 2.2E-06 52.6 2.4 33 152-186 16-48 (261)
121 1iy2_A ATP-dependent metallopr 91.9 0.1 3.6E-06 50.8 4.0 31 158-191 71-101 (278)
122 2jeo_A Uridine-cytidine kinase 91.9 0.072 2.5E-06 51.1 2.7 29 157-186 20-48 (245)
123 4b4t_L 26S protease subunit RP 91.8 0.14 4.9E-06 54.2 5.1 27 164-191 217-243 (437)
124 3fvq_A Fe(3+) IONS import ATP- 91.8 0.061 2.1E-06 55.5 2.2 35 151-186 18-53 (359)
125 1y63_A LMAJ004144AAA protein; 91.8 0.09 3.1E-06 48.0 3.2 28 158-186 6-33 (184)
126 2i3b_A HCR-ntpase, human cance 91.8 0.079 2.7E-06 49.5 2.7 24 162-186 1-24 (189)
127 1d2n_A N-ethylmaleimide-sensit 91.7 0.15 5E-06 49.4 4.8 29 161-190 63-91 (272)
128 2chg_A Replication factor C sm 91.7 0.59 2E-05 42.2 8.6 25 161-186 37-61 (226)
129 1xwi_A SKD1 protein; VPS4B, AA 91.6 0.29 1E-05 49.1 7.0 24 163-187 46-69 (322)
130 3asz_A Uridine kinase; cytidin 91.6 0.075 2.6E-06 49.2 2.4 27 159-186 3-29 (211)
131 2ixe_A Antigen peptide transpo 91.5 0.1 3.4E-06 51.5 3.4 30 157-187 40-69 (271)
132 2yhs_A FTSY, cell division pro 91.5 0.16 5.6E-06 54.6 5.3 29 157-186 288-316 (503)
133 2yyz_A Sugar ABC transporter, 91.5 0.073 2.5E-06 54.9 2.4 33 154-187 21-53 (359)
134 1t9h_A YLOQ, probable GTPase E 91.5 0.036 1.2E-06 56.0 0.0 32 153-185 164-195 (307)
135 2qp9_X Vacuolar protein sortin 91.4 0.26 9E-06 50.1 6.5 28 163-191 85-112 (355)
136 1z47_A CYSA, putative ABC-tran 91.4 0.071 2.4E-06 54.9 2.2 33 154-187 33-65 (355)
137 4b4t_M 26S protease regulatory 91.4 0.14 4.7E-06 54.2 4.5 28 164-192 217-244 (434)
138 2it1_A 362AA long hypothetical 91.4 0.076 2.6E-06 54.8 2.4 32 155-187 22-53 (362)
139 2bbs_A Cystic fibrosis transme 91.4 0.066 2.2E-06 53.5 1.8 29 157-186 59-87 (290)
140 1v43_A Sugar-binding transport 91.3 0.077 2.6E-06 55.0 2.4 32 155-187 30-61 (372)
141 3rlf_A Maltose/maltodextrin im 91.3 0.078 2.7E-06 55.2 2.4 35 151-186 17-52 (381)
142 4b4t_I 26S protease regulatory 91.3 0.16 5.5E-06 53.7 4.8 27 165-192 219-245 (437)
143 2b8t_A Thymidine kinase; deoxy 91.2 0.1 3.4E-06 50.3 3.0 126 160-305 10-147 (223)
144 3pqc_A Probable GTP-binding pr 91.2 1.1 3.8E-05 39.7 9.8 23 164-187 25-47 (195)
145 1g29_1 MALK, maltose transport 91.1 0.08 2.7E-06 54.8 2.2 33 154-187 21-53 (372)
146 1s96_A Guanylate kinase, GMP k 91.0 0.11 3.6E-06 49.7 2.8 29 159-188 13-41 (219)
147 2ffh_A Protein (FFH); SRP54, s 91.0 0.99 3.4E-05 47.5 10.5 46 161-207 97-143 (425)
148 2pjz_A Hypothetical protein ST 91.0 0.078 2.7E-06 52.2 1.9 29 157-187 26-54 (263)
149 2a5y_B CED-4; apoptosis; HET: 91.0 0.29 9.8E-06 52.7 6.5 48 162-211 152-206 (549)
150 3ney_A 55 kDa erythrocyte memb 90.9 0.12 4E-06 48.9 3.0 29 157-186 14-42 (197)
151 1lv7_A FTSH; alpha/beta domain 90.9 0.32 1.1E-05 46.5 6.2 25 165-190 48-72 (257)
152 3tui_C Methionine import ATP-b 90.9 0.091 3.1E-06 54.4 2.4 37 150-187 41-78 (366)
153 3vaa_A Shikimate kinase, SK; s 90.8 0.12 4E-06 47.8 2.9 29 158-187 21-49 (199)
154 3gd7_A Fusion complex of cysti 90.8 0.089 3E-06 54.9 2.2 35 151-186 35-70 (390)
155 1in4_A RUVB, holliday junction 90.8 0.17 5.9E-06 50.9 4.3 28 163-191 52-79 (334)
156 3n70_A Transport activator; si 90.7 0.41 1.4E-05 41.9 6.3 26 161-187 23-48 (145)
157 3a00_A Guanylate kinase, GMP k 90.7 0.11 3.9E-06 47.4 2.7 24 162-186 1-24 (186)
158 3d31_A Sulfate/molybdate ABC t 90.6 0.067 2.3E-06 54.9 1.1 31 156-187 20-50 (348)
159 2qt1_A Nicotinamide riboside k 90.5 0.12 4.1E-06 47.8 2.6 30 156-186 15-44 (207)
160 3cf0_A Transitional endoplasmi 90.5 0.25 8.7E-06 48.8 5.2 30 160-190 47-76 (301)
161 2yv5_A YJEQ protein; hydrolase 90.5 0.077 2.6E-06 53.0 1.4 33 153-187 156-188 (302)
162 2ce7_A Cell division protein F 90.4 0.53 1.8E-05 50.3 7.9 25 165-190 52-76 (476)
163 2qm8_A GTPase/ATPase; G protei 90.4 0.12 4E-06 52.6 2.7 35 151-186 43-78 (337)
164 3aez_A Pantothenate kinase; tr 90.3 0.13 4.3E-06 51.9 2.9 27 158-185 86-112 (312)
165 1ye8_A Protein THEP1, hypothet 90.3 0.12 4.2E-06 47.5 2.5 23 164-187 2-24 (178)
166 4b4t_H 26S protease regulatory 90.3 0.24 8.1E-06 52.9 5.0 28 164-192 245-272 (467)
167 1ls1_A Signal recognition part 90.1 1.2 4E-05 44.3 9.7 43 161-204 97-140 (295)
168 1kag_A SKI, shikimate kinase I 90.1 0.15 5E-06 45.5 2.8 25 161-186 3-27 (173)
169 3b9p_A CG5977-PA, isoform A; A 90.0 0.37 1.3E-05 46.9 5.9 29 161-190 53-81 (297)
170 1oxx_K GLCV, glucose, ABC tran 89.8 0.068 2.3E-06 55.0 0.4 31 156-187 25-55 (353)
171 2gza_A Type IV secretion syste 89.8 0.14 4.6E-06 52.6 2.6 33 157-190 170-202 (361)
172 2gj8_A MNME, tRNA modification 89.8 0.12 4.1E-06 46.3 2.0 26 161-187 3-28 (172)
173 3nh6_A ATP-binding cassette SU 89.8 0.12 4E-06 52.2 2.0 30 157-187 75-104 (306)
174 3tau_A Guanylate kinase, GMP k 89.7 0.16 5.3E-06 47.5 2.8 27 160-187 6-32 (208)
175 3e1s_A Exodeoxyribonuclease V, 89.7 0.24 8.2E-06 54.1 4.6 24 161-185 203-226 (574)
176 2npi_A Protein CLP1; CLP1-PCF1 89.7 0.13 4.5E-06 54.7 2.5 29 157-186 133-161 (460)
177 1knq_A Gluconate kinase; ALFA/ 89.7 0.16 5.5E-06 45.5 2.7 26 160-186 6-31 (175)
178 3t15_A Ribulose bisphosphate c 89.6 0.19 6.3E-06 49.8 3.4 32 165-199 39-70 (293)
179 4b3f_X DNA-binding protein smu 89.6 0.3 1E-05 53.8 5.4 51 164-216 207-257 (646)
180 3u61_B DNA polymerase accessor 89.6 0.36 1.2E-05 47.7 5.5 28 160-188 45-73 (324)
181 2qor_A Guanylate kinase; phosp 89.5 0.19 6.3E-06 46.6 3.1 28 159-187 9-36 (204)
182 1sq5_A Pantothenate kinase; P- 89.5 0.15 5.1E-06 50.9 2.6 28 158-186 76-103 (308)
183 1g5t_A COB(I)alamin adenosyltr 89.5 0.29 1E-05 46.3 4.4 106 155-265 22-131 (196)
184 1yqt_A RNAse L inhibitor; ATP- 89.3 0.17 5.9E-06 54.7 3.1 33 152-185 37-69 (538)
185 2w58_A DNAI, primosome compone 89.2 0.25 8.6E-06 45.2 3.8 35 163-198 55-90 (202)
186 3kta_A Chromosome segregation 89.1 0.2 6.8E-06 45.1 2.9 34 149-184 11-47 (182)
187 1u0l_A Probable GTPase ENGC; p 89.1 0.095 3.2E-06 52.2 0.8 35 153-188 160-194 (301)
188 1qhx_A CPT, protein (chloramph 89.0 0.31 1E-05 43.5 4.1 28 162-190 3-30 (178)
189 3cm0_A Adenylate kinase; ATP-b 89.0 0.16 5.5E-06 45.7 2.2 25 161-186 3-27 (186)
190 2j37_W Signal recognition part 88.9 1 3.6E-05 48.4 8.8 48 160-208 99-147 (504)
191 2onk_A Molybdate/tungstate ABC 88.9 0.16 5.6E-06 49.1 2.3 30 156-187 19-48 (240)
192 1lw7_A Transcriptional regulat 88.9 0.15 5E-06 52.1 2.0 30 158-188 164-195 (365)
193 2xxa_A Signal recognition part 88.9 0.92 3.1E-05 47.8 8.2 45 161-205 99-144 (433)
194 2rcn_A Probable GTPase ENGC; Y 88.8 0.11 3.8E-06 53.6 1.1 34 153-187 206-239 (358)
195 2bbw_A Adenylate kinase 4, AK4 88.8 0.19 6.5E-06 48.0 2.6 25 161-186 26-50 (246)
196 1tev_A UMP-CMP kinase; ploop, 88.6 1.8 6.1E-05 38.6 9.0 24 162-186 3-26 (196)
197 1hqc_A RUVB; extended AAA-ATPa 88.6 0.52 1.8E-05 46.2 5.8 28 162-190 38-65 (324)
198 2chq_A Replication factor C sm 88.6 0.27 9.1E-06 47.9 3.6 26 160-186 36-61 (319)
199 3b9q_A Chloroplast SRP recepto 88.5 0.22 7.6E-06 49.8 3.0 28 158-186 96-123 (302)
200 3j16_B RLI1P; ribosome recycli 88.3 0.22 7.6E-06 54.8 3.1 34 152-186 93-126 (608)
201 2bdt_A BH3686; alpha-beta prot 88.3 0.18 6.2E-06 45.8 2.1 23 162-185 2-24 (189)
202 3vfd_A Spastin; ATPase, microt 88.3 0.55 1.9E-05 48.1 6.0 35 162-199 148-182 (389)
203 3eie_A Vacuolar protein sortin 88.3 0.24 8.2E-06 49.4 3.1 27 163-190 52-78 (322)
204 3uie_A Adenylyl-sulfate kinase 88.3 0.22 7.4E-06 46.0 2.6 25 160-185 23-47 (200)
205 3e70_C DPA, signal recognition 88.2 1.9 6.6E-05 43.5 9.8 28 158-186 125-152 (328)
206 3sfz_A APAF-1, apoptotic pepti 88.1 0.29 9.9E-06 56.7 4.1 37 163-201 148-190 (1249)
207 1vt4_I APAF-1 related killer D 88.0 0.89 3E-05 53.4 7.9 48 162-211 150-201 (1221)
208 1cke_A CK, MSSA, protein (cyti 87.9 0.25 8.6E-06 45.9 2.9 24 162-186 5-28 (227)
209 1rj9_A FTSY, signal recognitio 87.9 0.25 8.6E-06 49.5 2.9 26 160-186 100-125 (304)
210 1jr3_A DNA polymerase III subu 87.8 0.85 2.9E-05 45.5 6.9 22 164-186 40-61 (373)
211 1rz3_A Hypothetical protein rb 87.6 0.26 8.9E-06 45.6 2.7 27 158-185 18-44 (201)
212 3bk7_A ABC transporter ATP-bin 87.6 0.23 7.7E-06 54.7 2.6 33 152-185 107-139 (607)
213 2zan_A Vacuolar protein sortin 87.5 0.5 1.7E-05 49.6 5.2 25 162-187 167-191 (444)
214 2pt7_A CAG-ALFA; ATPase, prote 87.4 0.19 6.3E-06 51.0 1.7 32 157-189 166-197 (330)
215 1zuh_A Shikimate kinase; alpha 87.4 0.34 1.2E-05 43.0 3.2 25 163-188 8-32 (168)
216 3hu3_A Transitional endoplasmi 87.4 1.1 3.9E-05 47.8 7.9 35 162-199 238-272 (489)
217 2qag_B Septin-6, protein NEDD5 87.3 0.26 9E-06 52.0 2.8 29 157-186 35-65 (427)
218 2qz4_A Paraplegin; AAA+, SPG7, 87.3 0.43 1.5E-05 45.2 4.1 28 162-190 39-66 (262)
219 3upu_A ATP-dependent DNA helic 87.2 0.45 1.5E-05 50.1 4.6 21 164-185 47-67 (459)
220 2oap_1 GSPE-2, type II secreti 87.2 0.27 9.3E-06 53.0 2.9 32 158-190 256-287 (511)
221 2bjv_A PSP operon transcriptio 87.1 0.55 1.9E-05 45.0 4.8 42 162-204 29-71 (265)
222 4e22_A Cytidylate kinase; P-lo 87.0 0.28 9.6E-06 47.3 2.6 26 160-186 25-50 (252)
223 2qgz_A Helicase loader, putati 87.0 0.38 1.3E-05 48.1 3.6 45 161-213 151-197 (308)
224 2f9l_A RAB11B, member RAS onco 86.9 0.28 9.4E-06 44.8 2.4 23 164-187 7-29 (199)
225 1oix_A RAS-related protein RAB 86.9 0.26 8.9E-06 44.9 2.2 23 164-187 31-53 (191)
226 1sxj_A Activator 1 95 kDa subu 86.8 0.73 2.5E-05 49.3 6.0 35 162-199 77-111 (516)
227 1kao_A RAP2A; GTP-binding prot 86.8 0.29 1E-05 42.1 2.4 23 164-187 5-27 (167)
228 2p67_A LAO/AO transport system 86.7 2.2 7.6E-05 42.9 9.3 28 157-185 51-78 (341)
229 1z2a_A RAS-related protein RAB 86.7 0.3 1E-05 42.3 2.4 23 164-187 7-29 (168)
230 3b5x_A Lipid A export ATP-bind 86.6 0.29 9.9E-06 53.3 2.8 30 157-187 364-393 (582)
231 2dyk_A GTP-binding protein; GT 86.6 0.3 1E-05 42.1 2.4 23 164-187 3-25 (161)
232 2og2_A Putative signal recogni 86.5 0.34 1.2E-05 49.9 3.1 29 157-186 152-180 (359)
233 1ek0_A Protein (GTP-binding pr 86.5 0.32 1.1E-05 42.2 2.5 23 164-187 5-27 (170)
234 1yqt_A RNAse L inhibitor; ATP- 86.4 0.27 9.1E-06 53.3 2.3 28 158-186 308-335 (538)
235 1c1y_A RAS-related protein RAP 86.3 0.32 1.1E-05 42.1 2.4 23 164-187 5-27 (167)
236 3f9v_A Minichromosome maintena 86.3 0.67 2.3E-05 50.8 5.4 29 71-99 207-236 (595)
237 3dl0_A Adenylate kinase; phosp 86.3 0.46 1.6E-05 44.0 3.6 23 164-187 2-24 (216)
238 3sop_A Neuronal-specific septi 86.3 0.29 9.8E-06 48.2 2.3 24 164-188 4-27 (270)
239 3d8b_A Fidgetin-like protein 1 86.2 0.67 2.3E-05 47.0 5.1 35 161-198 116-150 (357)
240 1u8z_A RAS-related protein RAL 86.1 0.34 1.2E-05 41.8 2.5 23 164-187 6-28 (168)
241 1z08_A RAS-related protein RAB 86.1 0.34 1.2E-05 42.2 2.5 23 164-187 8-30 (170)
242 1g16_A RAS-related protein SEC 86.1 0.32 1.1E-05 42.3 2.3 23 164-187 5-27 (170)
243 1iqp_A RFCS; clamp loader, ext 86.0 0.7 2.4E-05 45.0 5.0 26 160-186 44-69 (327)
244 2px0_A Flagellar biosynthesis 86.0 0.9 3.1E-05 45.2 5.8 52 159-211 102-155 (296)
245 2ewv_A Twitching motility prot 86.0 0.34 1.2E-05 49.9 2.7 27 159-186 133-159 (372)
246 2wji_A Ferrous iron transport 86.0 0.28 9.7E-06 43.3 1.9 22 164-186 5-26 (165)
247 1r8s_A ADP-ribosylation factor 86.0 0.36 1.2E-05 41.8 2.6 23 164-187 2-24 (164)
248 1gvn_B Zeta; postsegregational 85.9 0.57 1.9E-05 46.3 4.3 30 157-187 28-57 (287)
249 3iij_A Coilin-interacting nucl 85.9 0.43 1.5E-05 42.9 3.1 26 160-186 9-34 (180)
250 2dhr_A FTSH; AAA+ protein, hex 85.9 0.47 1.6E-05 51.0 3.9 29 159-190 63-91 (499)
251 2ce2_X GTPase HRAS; signaling 85.9 0.33 1.1E-05 41.6 2.3 23 164-187 5-27 (166)
252 1z0j_A RAB-22, RAS-related pro 85.8 0.35 1.2E-05 41.9 2.4 23 164-187 8-30 (170)
253 1wms_A RAB-9, RAB9, RAS-relate 85.8 0.35 1.2E-05 42.4 2.4 23 164-187 9-31 (177)
254 1ni3_A YCHF GTPase, YCHF GTP-b 85.8 0.39 1.3E-05 50.1 3.1 30 156-186 14-43 (392)
255 3fb4_A Adenylate kinase; psych 85.8 0.47 1.6E-05 43.8 3.4 23 164-187 2-24 (216)
256 2c9o_A RUVB-like 1; hexameric 85.7 0.48 1.6E-05 49.8 3.8 35 162-197 63-97 (456)
257 2wwf_A Thymidilate kinase, put 85.7 0.42 1.4E-05 43.9 3.0 27 159-186 7-33 (212)
258 3bc1_A RAS-related protein RAB 85.7 0.36 1.2E-05 42.8 2.5 23 164-187 13-35 (195)
259 4akg_A Glutathione S-transfera 85.7 0.69 2.3E-05 59.0 5.7 27 160-186 1265-1291(2695)
260 2vli_A Antibiotic resistance p 85.6 0.51 1.7E-05 42.2 3.4 27 161-188 4-30 (183)
261 2yl4_A ATP-binding cassette SU 85.6 0.46 1.6E-05 51.8 3.7 32 156-188 364-395 (595)
262 2r62_A Cell division protease 85.6 0.29 9.8E-06 47.0 1.8 25 165-190 47-71 (268)
263 2nzj_A GTP-binding protein REM 85.5 0.3 1E-05 42.7 1.9 22 164-186 6-27 (175)
264 2r44_A Uncharacterized protein 85.5 0.41 1.4E-05 47.5 3.0 32 162-194 46-77 (331)
265 1ofh_A ATP-dependent HSL prote 85.5 0.57 1.9E-05 45.4 4.0 36 161-199 49-84 (310)
266 2v54_A DTMP kinase, thymidylat 85.5 0.97 3.3E-05 41.0 5.4 25 161-186 3-27 (204)
267 3trf_A Shikimate kinase, SK; a 85.4 0.51 1.8E-05 42.4 3.4 25 162-187 5-29 (185)
268 1r2q_A RAS-related protein RAB 85.4 0.39 1.3E-05 41.6 2.5 22 164-186 8-29 (170)
269 3hws_A ATP-dependent CLP prote 85.3 0.58 2E-05 47.3 4.1 29 162-191 51-79 (363)
270 2r8r_A Sensor protein; KDPD, P 85.3 0.52 1.8E-05 45.6 3.5 52 161-212 4-57 (228)
271 3bk7_A ABC transporter ATP-bin 85.2 0.33 1.1E-05 53.4 2.3 28 158-186 378-405 (607)
272 4dkx_A RAS-related protein RAB 85.2 2.3 7.9E-05 40.0 8.0 22 164-186 15-36 (216)
273 4dsu_A GTPase KRAS, isoform 2B 85.2 0.39 1.3E-05 42.6 2.4 23 164-187 6-28 (189)
274 3syl_A Protein CBBX; photosynt 85.2 0.46 1.6E-05 46.4 3.1 25 161-186 66-90 (309)
275 3zvl_A Bifunctional polynucleo 85.2 2.8 9.5E-05 43.5 9.3 95 161-271 257-353 (416)
276 2erx_A GTP-binding protein DI- 85.1 0.35 1.2E-05 41.9 2.1 22 164-186 5-26 (172)
277 3ozx_A RNAse L inhibitor; ATP 85.1 0.29 9.9E-06 53.1 1.8 28 158-186 290-317 (538)
278 1sxj_B Activator 1 37 kDa subu 85.1 1.5 5.2E-05 42.5 6.9 26 160-186 40-65 (323)
279 2wjg_A FEOB, ferrous iron tran 85.1 0.37 1.3E-05 42.9 2.2 23 163-186 8-30 (188)
280 3qf4_B Uncharacterized ABC tra 85.0 0.55 1.9E-05 51.3 4.0 31 157-188 376-406 (598)
281 2iw3_A Elongation factor 3A; a 85.0 0.34 1.1E-05 56.2 2.4 29 156-185 455-483 (986)
282 1ky3_A GTP-binding protein YPT 85.0 0.41 1.4E-05 42.1 2.4 23 164-187 10-32 (182)
283 1svm_A Large T antigen; AAA+ f 85.0 0.41 1.4E-05 49.5 2.8 29 157-186 164-192 (377)
284 2pez_A Bifunctional 3'-phospho 85.0 0.42 1.4E-05 43.0 2.6 25 161-186 4-28 (179)
285 3b60_A Lipid A export ATP-bind 84.9 0.45 1.6E-05 51.7 3.3 32 156-188 363-394 (582)
286 2vp4_A Deoxynucleoside kinase; 84.9 0.42 1.4E-05 45.2 2.7 28 158-186 16-43 (230)
287 2c95_A Adenylate kinase 1; tra 84.8 0.44 1.5E-05 43.0 2.7 26 160-186 7-32 (196)
288 2hxs_A RAB-26, RAS-related pro 84.8 0.43 1.5E-05 41.9 2.5 22 164-186 8-29 (178)
289 1upt_A ARL1, ADP-ribosylation 84.8 0.42 1.5E-05 41.6 2.5 26 161-187 6-31 (171)
290 3jvv_A Twitching mobility prot 84.8 0.41 1.4E-05 49.1 2.7 27 159-186 120-146 (356)
291 1z0f_A RAB14, member RAS oncog 84.8 0.43 1.5E-05 41.8 2.5 23 164-187 17-39 (179)
292 1kht_A Adenylate kinase; phosp 84.7 0.47 1.6E-05 42.5 2.8 25 161-186 2-26 (192)
293 2fn4_A P23, RAS-related protei 84.7 0.4 1.4E-05 42.1 2.2 22 164-186 11-32 (181)
294 3lw7_A Adenylate kinase relate 84.6 0.33 1.1E-05 42.5 1.6 19 164-183 3-21 (179)
295 2y8e_A RAB-protein 6, GH09086P 84.6 0.41 1.4E-05 41.9 2.3 22 164-186 16-37 (179)
296 1zd8_A GTP:AMP phosphotransfer 84.5 0.43 1.5E-05 44.8 2.5 27 159-186 4-30 (227)
297 2iyv_A Shikimate kinase, SK; t 84.5 0.6 2.1E-05 42.0 3.4 23 163-186 3-25 (184)
298 2ged_A SR-beta, signal recogni 84.5 0.44 1.5E-05 42.8 2.4 24 163-187 49-72 (193)
299 1nn5_A Similar to deoxythymidy 84.5 0.48 1.6E-05 43.4 2.8 27 159-186 6-32 (215)
300 1qvr_A CLPB protein; coiled co 84.4 0.93 3.2E-05 51.6 5.7 26 160-186 189-214 (854)
301 3tqf_A HPR(Ser) kinase; transf 84.4 0.59 2E-05 43.6 3.3 25 161-185 15-39 (181)
302 3q85_A GTP-binding protein REM 84.4 0.37 1.3E-05 42.0 1.9 21 164-185 4-24 (169)
303 3kb2_A SPBC2 prophage-derived 84.3 0.45 1.5E-05 41.8 2.5 22 164-186 3-24 (173)
304 2oil_A CATX-8, RAS-related pro 84.3 0.45 1.6E-05 42.7 2.5 23 164-187 27-49 (193)
305 2qmh_A HPR kinase/phosphorylas 84.3 0.46 1.6E-05 45.2 2.6 24 161-184 33-56 (205)
306 3p32_A Probable GTPase RV1496/ 84.2 2.7 9.1E-05 42.6 8.5 25 160-185 77-101 (355)
307 3clv_A RAB5 protein, putative; 84.1 0.46 1.6E-05 42.3 2.4 22 164-186 9-30 (208)
308 1aky_A Adenylate kinase; ATP:A 84.0 0.52 1.8E-05 43.9 2.8 25 161-186 3-27 (220)
309 3ihw_A Centg3; RAS, centaurin, 83.9 0.48 1.7E-05 42.8 2.5 23 164-187 22-44 (184)
310 2g6b_A RAS-related protein RAB 83.9 0.49 1.7E-05 41.6 2.5 23 164-187 12-34 (180)
311 4a82_A Cystic fibrosis transme 83.9 0.25 8.7E-06 53.7 0.7 30 157-187 362-391 (578)
312 2zej_A Dardarin, leucine-rich 83.8 0.38 1.3E-05 43.2 1.8 21 164-185 4-24 (184)
313 3be4_A Adenylate kinase; malar 83.7 0.5 1.7E-05 44.1 2.6 26 161-187 4-29 (217)
314 3kkq_A RAS-related protein M-R 83.7 0.5 1.7E-05 41.9 2.5 22 164-186 20-41 (183)
315 2a9k_A RAS-related protein RAL 83.7 0.5 1.7E-05 41.6 2.5 23 164-187 20-42 (187)
316 2bme_A RAB4A, RAS-related prot 83.7 0.47 1.6E-05 42.1 2.3 23 164-187 12-34 (186)
317 2efe_B Small GTP-binding prote 83.7 0.5 1.7E-05 41.6 2.5 22 164-186 14-35 (181)
318 3bwd_D RAC-like GTP-binding pr 83.6 0.51 1.7E-05 41.6 2.5 24 163-187 9-32 (182)
319 2lkc_A Translation initiation 83.6 0.48 1.6E-05 41.6 2.3 25 161-186 7-31 (178)
320 2cxx_A Probable GTP-binding pr 83.6 0.39 1.3E-05 42.7 1.7 22 164-186 3-24 (190)
321 3con_A GTPase NRAS; structural 83.5 0.51 1.7E-05 42.2 2.5 23 164-187 23-45 (190)
322 3tkl_A RAS-related protein RAB 83.5 0.51 1.7E-05 42.2 2.5 23 164-187 18-40 (196)
323 1ega_A Protein (GTP-binding pr 83.5 0.35 1.2E-05 48.0 1.5 26 161-187 7-32 (301)
324 2if2_A Dephospho-COA kinase; a 83.5 0.47 1.6E-05 43.4 2.3 21 164-185 3-23 (204)
325 1via_A Shikimate kinase; struc 83.4 0.54 1.8E-05 42.1 2.6 22 164-186 6-27 (175)
326 1mh1_A RAC1; GTP-binding, GTPa 83.4 0.52 1.8E-05 41.6 2.5 22 164-186 7-28 (186)
327 2gf9_A RAS-related protein RAB 83.4 0.52 1.8E-05 42.3 2.5 23 164-187 24-46 (189)
328 1svi_A GTP-binding protein YSX 83.4 0.41 1.4E-05 42.9 1.8 24 162-186 23-46 (195)
329 2bwj_A Adenylate kinase 5; pho 83.3 0.48 1.6E-05 42.9 2.2 25 161-186 11-35 (199)
330 3c5c_A RAS-like protein 12; GD 83.3 0.52 1.8E-05 42.5 2.4 23 164-187 23-45 (187)
331 2cdn_A Adenylate kinase; phosp 83.2 0.6 2.1E-05 42.8 2.9 26 160-186 18-43 (201)
332 4eaq_A DTMP kinase, thymidylat 83.2 1.2 4E-05 42.4 5.0 28 158-186 22-49 (229)
333 3dz8_A RAS-related protein RAB 83.2 0.52 1.8E-05 42.4 2.4 23 164-187 25-47 (191)
334 1ojl_A Transcriptional regulat 83.1 0.81 2.8E-05 45.5 4.0 43 161-204 24-67 (304)
335 3tw8_B RAS-related protein RAB 83.1 0.36 1.2E-05 42.4 1.2 22 164-186 11-32 (181)
336 3nwj_A ATSK2; P loop, shikimat 83.1 0.39 1.3E-05 46.8 1.6 36 151-187 33-72 (250)
337 3pxg_A Negative regulator of g 83.1 1.3 4.6E-05 46.7 5.9 26 160-186 199-224 (468)
338 2iwr_A Centaurin gamma 1; ANK 83.0 0.41 1.4E-05 42.2 1.6 23 164-187 9-31 (178)
339 3lxx_A GTPase IMAP family memb 83.0 0.48 1.6E-05 44.8 2.1 23 164-187 31-53 (239)
340 2fg5_A RAB-22B, RAS-related pr 82.9 0.51 1.8E-05 42.6 2.2 23 164-187 25-47 (192)
341 1m7b_A RND3/RHOE small GTP-bin 82.8 0.53 1.8E-05 42.1 2.3 23 164-187 9-31 (184)
342 1m2o_B GTP-binding protein SAR 82.8 0.55 1.9E-05 42.5 2.4 26 161-187 22-47 (190)
343 2plr_A DTMP kinase, probable t 82.8 0.58 2E-05 42.6 2.6 25 161-186 3-27 (213)
344 2bov_A RAla, RAS-related prote 82.8 0.56 1.9E-05 42.3 2.5 23 164-187 16-38 (206)
345 3q72_A GTP-binding protein RAD 82.8 0.49 1.7E-05 41.1 2.0 21 164-185 4-24 (166)
346 1z06_A RAS-related protein RAB 82.8 0.56 1.9E-05 42.0 2.4 23 164-187 22-44 (189)
347 1vg8_A RAS-related protein RAB 82.8 0.56 1.9E-05 42.4 2.4 23 164-187 10-32 (207)
348 1ly1_A Polynucleotide kinase; 82.8 0.57 1.9E-05 41.5 2.4 21 164-185 4-24 (181)
349 1uf9_A TT1252 protein; P-loop, 82.7 0.68 2.3E-05 42.0 3.0 25 161-186 7-31 (203)
350 1zd9_A ADP-ribosylation factor 82.7 0.57 2E-05 42.1 2.5 23 164-187 24-46 (188)
351 2fna_A Conserved hypothetical 82.7 1.1 3.7E-05 44.0 4.7 34 163-199 31-64 (357)
352 3t5g_A GTP-binding protein RHE 82.6 0.55 1.9E-05 41.5 2.3 22 164-186 8-29 (181)
353 1ukz_A Uridylate kinase; trans 82.6 0.69 2.4E-05 42.3 3.0 26 161-187 14-39 (203)
354 3m6a_A ATP-dependent protease 82.6 0.53 1.8E-05 50.9 2.6 30 160-190 106-135 (543)
355 1um8_A ATP-dependent CLP prote 82.5 0.9 3.1E-05 46.1 4.1 28 162-190 72-99 (376)
356 1tq4_A IIGP1, interferon-induc 82.5 0.42 1.4E-05 50.2 1.6 22 164-186 71-92 (413)
357 2z0h_A DTMP kinase, thymidylat 82.5 1.2 4E-05 40.2 4.5 21 165-186 3-23 (197)
358 2yvu_A Probable adenylyl-sulfa 82.5 0.69 2.4E-05 41.8 3.0 28 158-186 9-36 (186)
359 3reg_A RHO-like small GTPase; 82.4 0.6 2E-05 42.0 2.5 23 164-187 25-47 (194)
360 3co5_A Putative two-component 82.4 0.43 1.5E-05 41.7 1.4 25 161-186 26-50 (143)
361 1x3s_A RAS-related protein RAB 82.2 0.61 2.1E-05 41.6 2.5 23 164-187 17-39 (195)
362 3v9p_A DTMP kinase, thymidylat 82.2 4.4 0.00015 38.7 8.7 94 160-271 23-128 (227)
363 2atv_A RERG, RAS-like estrogen 82.2 0.61 2.1E-05 42.2 2.4 40 146-187 13-52 (196)
364 2a5j_A RAS-related protein RAB 82.2 0.62 2.1E-05 41.9 2.5 23 164-187 23-45 (191)
365 3nbx_X ATPase RAVA; AAA+ ATPas 82.2 0.69 2.3E-05 49.7 3.2 38 160-198 39-76 (500)
366 2rhm_A Putative kinase; P-loop 82.1 0.89 3E-05 40.8 3.5 27 160-187 3-29 (193)
367 4f4c_A Multidrug resistance pr 82.0 0.42 1.4E-05 57.2 1.6 30 157-187 1100-1129(1321)
368 1jjv_A Dephospho-COA kinase; P 82.0 0.6 2.1E-05 42.9 2.4 21 164-185 4-24 (206)
369 3qf4_A ABC transporter, ATP-bi 82.0 0.53 1.8E-05 51.3 2.3 36 152-188 358-394 (587)
370 3oes_A GTPase rhebl1; small GT 81.9 0.6 2E-05 42.5 2.3 24 163-187 25-48 (201)
371 2p5s_A RAS and EF-hand domain 81.9 0.63 2.2E-05 42.2 2.4 23 164-187 30-52 (199)
372 3cf2_A TER ATPase, transitiona 81.8 0.96 3.3E-05 51.4 4.4 58 164-227 240-305 (806)
373 2cjw_A GTP-binding protein GEM 81.8 0.72 2.5E-05 42.0 2.8 22 164-186 8-29 (192)
374 1zbd_A Rabphilin-3A; G protein 81.8 0.58 2E-05 42.4 2.1 23 164-187 10-32 (203)
375 1ak2_A Adenylate kinase isoenz 81.7 0.74 2.5E-05 43.5 2.9 26 161-187 15-40 (233)
376 1a5t_A Delta prime, HOLB; zinc 81.7 2.8 9.7E-05 41.8 7.4 104 165-282 27-137 (334)
377 1nrj_B SR-beta, signal recogni 81.6 0.65 2.2E-05 42.6 2.5 24 163-187 13-36 (218)
378 1p9r_A General secretion pathw 81.5 0.71 2.4E-05 48.4 2.9 34 152-187 158-191 (418)
379 2gf0_A GTP-binding protein DI- 81.3 0.74 2.5E-05 41.2 2.7 24 163-187 9-32 (199)
380 3ozx_A RNAse L inhibitor; ATP 81.3 0.6 2E-05 50.6 2.4 27 158-185 21-47 (538)
381 1zak_A Adenylate kinase; ATP:A 81.3 0.74 2.5E-05 42.9 2.7 25 161-186 4-28 (222)
382 3t1o_A Gliding protein MGLA; G 81.2 0.71 2.4E-05 41.0 2.5 22 164-186 16-37 (198)
383 1ksh_A ARF-like protein 2; sma 81.2 0.53 1.8E-05 41.9 1.6 26 161-187 17-42 (186)
384 2fu5_C RAS-related protein RAB 81.2 0.49 1.7E-05 41.9 1.4 22 164-186 10-31 (183)
385 3lxw_A GTPase IMAP family memb 81.1 0.61 2.1E-05 44.7 2.2 24 163-187 22-45 (247)
386 3cf2_A TER ATPase, transitiona 81.1 1 3.5E-05 51.2 4.2 29 162-191 511-539 (806)
387 2r2a_A Uncharacterized protein 81.1 0.79 2.7E-05 43.0 2.8 22 165-186 8-29 (199)
388 2bcg_Y Protein YP2, GTP-bindin 81.0 0.66 2.3E-05 42.2 2.3 23 164-187 10-32 (206)
389 3thx_A DNA mismatch repair pro 81.0 2.8 9.6E-05 48.4 7.9 30 153-183 653-682 (934)
390 2h17_A ADP-ribosylation factor 80.9 0.55 1.9E-05 41.8 1.7 23 164-187 23-45 (181)
391 1odf_A YGR205W, hypothetical 3 80.9 0.73 2.5E-05 45.8 2.7 25 159-184 28-52 (290)
392 1zj6_A ADP-ribosylation factor 80.8 0.64 2.2E-05 41.6 2.1 24 162-186 16-39 (187)
393 2o52_A RAS-related protein RAB 80.8 0.58 2E-05 42.7 1.8 22 164-186 27-48 (200)
394 3cph_A RAS-related protein SEC 80.6 0.74 2.5E-05 41.8 2.4 23 164-187 22-44 (213)
395 2jaq_A Deoxyguanosine kinase; 80.6 0.8 2.7E-05 41.4 2.7 23 164-187 2-24 (205)
396 1nks_A Adenylate kinase; therm 80.6 0.91 3.1E-05 40.5 3.0 32 164-196 3-35 (194)
397 2ew1_A RAS-related protein RAB 80.6 0.7 2.4E-05 42.6 2.3 23 164-187 28-50 (201)
398 2pt5_A Shikimate kinase, SK; a 80.6 0.99 3.4E-05 39.7 3.2 22 164-186 2-23 (168)
399 3sr0_A Adenylate kinase; phosp 80.6 0.75 2.6E-05 43.3 2.5 32 164-200 2-33 (206)
400 2fh5_B SR-beta, signal recogni 80.6 0.75 2.6E-05 42.1 2.5 23 164-187 9-31 (214)
401 4edh_A DTMP kinase, thymidylat 80.5 5.9 0.0002 37.2 8.8 52 161-215 5-58 (213)
402 2pbr_A DTMP kinase, thymidylat 80.5 0.79 2.7E-05 41.1 2.6 22 164-186 2-23 (195)
403 3tlx_A Adenylate kinase 2; str 80.4 0.77 2.6E-05 43.9 2.6 25 161-186 28-52 (243)
404 4bas_A ADP-ribosylation factor 80.4 0.51 1.8E-05 42.3 1.2 22 164-186 19-40 (199)
405 2ohf_A Protein OLA1, GTP-bindi 80.3 0.71 2.4E-05 48.2 2.4 28 158-186 18-45 (396)
406 1tue_A Replication protein E1; 80.2 0.66 2.2E-05 44.4 1.9 26 159-185 55-80 (212)
407 1e6c_A Shikimate kinase; phosp 80.2 0.82 2.8E-05 40.4 2.5 23 163-186 3-25 (173)
408 1q3t_A Cytidylate kinase; nucl 80.2 0.86 2.9E-05 43.1 2.8 26 160-186 14-39 (236)
409 1ypw_A Transitional endoplasmi 80.2 1 3.4E-05 51.2 3.8 31 159-190 235-265 (806)
410 1xx6_A Thymidine kinase; NESG, 80.1 1.1 3.6E-05 41.9 3.4 43 159-201 5-49 (191)
411 3ux8_A Excinuclease ABC, A sub 80.1 0.56 1.9E-05 51.9 1.6 28 152-179 337-365 (670)
412 1e4v_A Adenylate kinase; trans 80.0 1 3.5E-05 41.7 3.2 23 164-187 2-24 (214)
413 4fcw_A Chaperone protein CLPB; 80.0 0.93 3.2E-05 44.1 3.1 37 163-200 48-85 (311)
414 3ux8_A Excinuclease ABC, A sub 79.9 0.54 1.8E-05 52.0 1.5 23 157-179 39-61 (670)
415 2f7s_A C25KG, RAS-related prot 79.9 0.68 2.3E-05 42.5 1.9 23 164-187 27-49 (217)
416 2q3h_A RAS homolog gene family 79.8 0.69 2.4E-05 41.8 1.9 23 163-186 21-43 (201)
417 3tqc_A Pantothenate kinase; bi 79.7 1.1 3.8E-05 45.3 3.6 21 164-185 94-114 (321)
418 2www_A Methylmalonic aciduria 79.7 0.8 2.7E-05 46.6 2.6 24 162-186 74-97 (349)
419 2ze6_A Isopentenyl transferase 79.7 1 3.4E-05 43.5 3.1 22 165-187 4-25 (253)
420 1sxj_E Activator 1 40 kDa subu 79.6 0.7 2.4E-05 46.0 2.1 27 158-185 32-58 (354)
421 2fv8_A H6, RHO-related GTP-bin 79.6 0.79 2.7E-05 41.9 2.3 23 164-187 27-49 (207)
422 3t61_A Gluconokinase; PSI-biol 79.5 1 3.4E-05 41.2 3.0 23 163-186 19-41 (202)
423 2atx_A Small GTP binding prote 79.4 0.8 2.8E-05 41.1 2.2 23 164-187 20-42 (194)
424 2gk6_A Regulator of nonsense t 79.3 2.1 7.1E-05 46.9 5.9 53 162-216 195-248 (624)
425 1m7g_A Adenylylsulfate kinase; 79.3 0.98 3.3E-05 41.8 2.8 27 159-186 22-48 (211)
426 2xtp_A GTPase IMAP family memb 79.2 0.73 2.5E-05 44.0 2.0 24 163-187 23-46 (260)
427 2aka_B Dynamin-1; fusion prote 79.2 0.66 2.3E-05 45.0 1.7 24 163-187 27-50 (299)
428 2gno_A DNA polymerase III, gam 79.2 3.7 0.00013 40.9 7.2 25 161-186 17-41 (305)
429 1ex7_A Guanylate kinase; subst 79.1 1.2 4.3E-05 41.3 3.5 22 165-187 4-25 (186)
430 2iw3_A Elongation factor 3A; a 79.0 0.42 1.4E-05 55.4 0.2 30 156-186 693-722 (986)
431 1gwn_A RHO-related GTP-binding 79.0 0.85 2.9E-05 42.1 2.3 23 164-187 30-52 (205)
432 3cr8_A Sulfate adenylyltranfer 79.0 0.52 1.8E-05 51.3 0.9 28 158-186 365-392 (552)
433 2gco_A H9, RHO-related GTP-bin 78.9 0.86 2.9E-05 41.5 2.3 23 164-187 27-49 (201)
434 2hup_A RAS-related protein RAB 78.9 0.85 2.9E-05 41.6 2.3 23 164-187 31-53 (201)
435 2f1r_A Molybdopterin-guanine d 78.9 0.45 1.5E-05 43.6 0.4 23 163-186 3-25 (171)
436 2h57_A ADP-ribosylation factor 78.7 0.53 1.8E-05 42.2 0.8 23 164-187 23-45 (190)
437 3q3j_B RHO-related GTP-binding 78.6 0.94 3.2E-05 41.9 2.5 23 164-187 29-51 (214)
438 3j16_B RLI1P; ribosome recycli 78.6 0.88 3E-05 50.0 2.6 25 161-186 377-401 (608)
439 2il1_A RAB12; G-protein, GDP, 78.5 0.62 2.1E-05 42.1 1.2 22 164-186 28-49 (192)
440 3a4m_A L-seryl-tRNA(SEC) kinas 78.5 1.5 5E-05 42.4 3.9 26 160-186 2-27 (260)
441 1wrb_A DJVLGB; RNA helicase, D 78.5 9.1 0.00031 35.9 9.5 31 151-184 52-82 (253)
442 1fzq_A ADP-ribosylation factor 78.4 0.83 2.8E-05 40.9 2.0 23 163-186 17-39 (181)
443 2j0v_A RAC-like GTP-binding pr 78.4 0.91 3.1E-05 41.4 2.3 23 164-187 11-33 (212)
444 4gzl_A RAS-related C3 botulinu 78.3 0.92 3.1E-05 41.5 2.3 24 162-186 30-53 (204)
445 1moz_A ARL1, ADP-ribosylation 78.2 0.62 2.1E-05 41.2 1.0 24 161-185 17-40 (183)
446 2grj_A Dephospho-COA kinase; T 78.2 1 3.4E-05 41.9 2.5 23 163-186 13-35 (192)
447 1qf9_A UMP/CMP kinase, protein 78.1 0.96 3.3E-05 40.4 2.3 23 163-186 7-29 (194)
448 2qu8_A Putative nucleolar GTP- 78.1 0.77 2.6E-05 42.8 1.7 23 163-186 30-52 (228)
449 1g41_A Heat shock protein HSLU 78.1 1.5 5.2E-05 46.4 4.1 28 163-191 51-78 (444)
450 3k53_A Ferrous iron transport 77.9 0.84 2.9E-05 44.2 2.0 22 164-186 5-26 (271)
451 1uj2_A Uridine-cytidine kinase 77.7 1 3.5E-05 43.1 2.5 21 164-185 24-44 (252)
452 2j1l_A RHO-related GTP-binding 77.6 0.82 2.8E-05 42.2 1.7 22 164-186 36-57 (214)
453 2b6h_A ADP-ribosylation factor 77.5 0.66 2.3E-05 42.1 1.1 24 162-186 29-52 (192)
454 3euj_A Chromosome partition pr 77.5 0.97 3.3E-05 48.4 2.5 28 157-186 25-52 (483)
455 3llu_A RAS-related GTP-binding 77.5 0.84 2.9E-05 41.3 1.8 22 164-186 22-43 (196)
456 3gmt_A Adenylate kinase; ssgci 77.4 1.1 3.7E-05 43.3 2.5 23 163-186 9-31 (230)
457 3cpj_B GTP-binding protein YPT 77.1 1.1 3.7E-05 41.6 2.4 23 164-187 15-37 (223)
458 3cbq_A GTP-binding protein REM 76.8 0.86 2.9E-05 41.5 1.6 20 164-184 25-44 (195)
459 3g5u_A MCG1178, multidrug resi 76.8 0.98 3.4E-05 53.9 2.5 35 152-187 1048-1083(1284)
460 3r20_A Cytidylate kinase; stru 76.7 1.1 3.9E-05 43.1 2.5 38 163-205 10-47 (233)
461 2hf9_A Probable hydrogenase ni 76.7 1.8 6E-05 40.0 3.8 23 163-186 39-61 (226)
462 2qnr_A Septin-2, protein NEDD5 76.7 0.87 3E-05 45.2 1.7 22 164-186 20-41 (301)
463 1f6b_A SAR1; gtpases, N-termin 76.5 0.87 3E-05 41.5 1.6 22 163-185 26-47 (198)
464 1sxj_D Activator 1 41 kDa subu 76.4 1.3 4.5E-05 43.7 3.0 23 163-186 59-81 (353)
465 2yc2_C IFT27, small RAB-relate 76.4 0.64 2.2E-05 41.9 0.6 22 164-186 22-43 (208)
466 3umf_A Adenylate kinase; rossm 76.4 1.2 4.2E-05 42.4 2.6 31 164-199 31-61 (217)
467 3lv8_A DTMP kinase, thymidylat 76.3 8.1 0.00028 37.1 8.5 52 161-213 26-78 (236)
468 3ake_A Cytidylate kinase; CMP 75.9 1.3 4.3E-05 40.3 2.5 24 164-188 4-27 (208)
469 2dy1_A Elongation factor G; tr 75.8 23 0.00077 39.1 13.0 27 158-185 5-31 (665)
470 1g8p_A Magnesium-chelatase 38 75.7 1.1 3.7E-05 44.4 2.1 25 162-187 45-69 (350)
471 2xb4_A Adenylate kinase; ATP-b 75.7 1.3 4.4E-05 41.6 2.5 22 164-186 2-23 (223)
472 3pxi_A Negative regulator of g 75.5 2.5 8.4E-05 47.3 5.2 26 160-186 199-224 (758)
473 4aby_A DNA repair protein RECN 75.4 0.41 1.4E-05 49.1 -1.1 35 148-184 46-81 (415)
474 1ko7_A HPR kinase/phosphatase; 75.2 1.1 3.9E-05 45.2 2.1 25 161-185 143-167 (314)
475 3szr_A Interferon-induced GTP- 75.1 0.72 2.5E-05 50.6 0.7 35 151-186 29-68 (608)
476 1f2t_A RAD50 ABC-ATPase; DNA d 75.1 1.2 4.2E-05 39.4 2.1 20 164-184 25-44 (149)
477 1sxj_C Activator 1 40 kDa subu 74.4 1.5 5.2E-05 43.7 2.8 21 165-186 49-69 (340)
478 2g3y_A GTP-binding protein GEM 74.4 1.3 4.6E-05 41.4 2.3 21 164-185 39-59 (211)
479 2j9r_A Thymidine kinase; TK1, 74.4 2 6.7E-05 41.1 3.4 125 159-305 25-159 (214)
480 3k1j_A LON protease, ATP-depen 74.1 1.4 5E-05 47.9 2.8 28 158-186 56-83 (604)
481 1wf3_A GTP-binding protein; GT 73.6 1.2 4.2E-05 44.2 1.9 25 162-187 7-31 (301)
482 2qtf_A Protein HFLX, GTP-bindi 73.5 12 0.00041 38.1 9.4 24 162-186 178-202 (364)
483 3a1s_A Iron(II) transport prot 73.5 1.4 4.8E-05 42.6 2.2 22 164-186 7-28 (258)
484 3th5_A RAS-related C3 botulinu 75.7 0.69 2.4E-05 42.0 0.0 24 161-185 29-52 (204)
485 1np6_A Molybdopterin-guanine d 73.3 1.6 5.6E-05 39.9 2.5 22 163-185 7-28 (174)
486 3oiy_A Reverse gyrase helicase 73.3 19 0.00065 36.3 10.9 52 161-214 35-86 (414)
487 1jal_A YCHF protein; nucleotid 73.0 1.7 5.7E-05 44.8 2.8 24 162-186 2-25 (363)
488 3i8s_A Ferrous iron transport 72.9 1.4 4.7E-05 43.0 2.0 22 164-186 5-26 (274)
489 1ypw_A Transitional endoplasmi 72.9 1.2 4.3E-05 50.4 1.9 33 158-191 507-539 (806)
490 1knx_A Probable HPR(Ser) kinas 72.8 1.4 4.8E-05 44.5 2.1 24 162-185 147-170 (312)
491 1vht_A Dephospho-COA kinase; s 72.8 1.8 6.1E-05 40.1 2.7 23 162-185 4-26 (218)
492 2x77_A ADP-ribosylation factor 72.8 1 3.6E-05 40.1 1.0 23 162-185 22-44 (189)
493 2wjy_A Regulator of nonsense t 72.8 4.5 0.00015 45.9 6.4 53 162-216 371-424 (800)
494 3g5u_A MCG1178, multidrug resi 72.6 1.6 5.4E-05 52.1 2.8 30 157-187 411-440 (1284)
495 3iev_A GTP-binding protein ERA 72.6 1.4 4.8E-05 43.7 2.0 24 163-187 11-34 (308)
496 2x2e_A Dynamin-1; nitration, h 72.5 0.68 2.3E-05 46.9 -0.3 23 164-187 33-55 (353)
497 1a7j_A Phosphoribulokinase; tr 72.0 1.7 6E-05 42.9 2.6 23 162-185 5-27 (290)
498 1xjc_A MOBB protein homolog; s 72.0 2.5 8.6E-05 38.7 3.5 21 164-185 6-26 (169)
499 1jwy_B Dynamin A GTPase domain 71.9 1.4 4.9E-05 43.0 1.9 23 164-187 26-48 (315)
500 2wsm_A Hydrogenase expression/ 71.8 1.7 6E-05 39.8 2.4 25 161-186 29-53 (221)
No 1
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=100.00 E-value=3.7e-141 Score=1129.83 Aligned_cols=511 Identities=62% Similarity=1.023 Sum_probs=477.1
Q ss_pred CCCChHHHHHHHHHHHHcccCccCccceeEEEEEECcEEEEEecCCCcccCEEEEcCCceEEEEEEeCCeEEEEEeCCCC
Q psy2894 1 MKINASEISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVFGLALNLERDSIGAVILGKYE 80 (515)
Q Consensus 1 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~~~~~g~V~~l~~~~v~~~~~~~~~ 80 (515)
|+++++|++++|++++++|+.....+++|+|++|.|++++|+|++++++||+|+|.++..|+|++++++.+++++|+++.
T Consensus 1 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~G~V~~v~g~i~~v~Gl~~~~~gElv~~~~~~~g~v~~l~~d~v~~~~~~~~~ 80 (513)
T 3oaa_A 1 MQLNSTEISELIKQRIAQFNVVSEAHNEGTIVSVSDGVIRIHGLADCMQGEMISLPGNRYAIALNLERDSVGAVVMGPYA 80 (513)
T ss_dssp -----------------------CCTTEEEEEEEETTEEEEEECTTCBTTCEEEETTTEEEEEEEECSSCEEEEESSCCS
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCceeEEEEEEEECcEEEEECCccCCcCCEEEECCCCEEEEEEeeCCEEEEEEeCCcc
Confidence 78899999999999999999888899999999999999999999999999999999889999999999999999999999
Q ss_pred CCCCCCEEEEcCCccccccCccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCcccccccccccccccccc
Q psy2894 81 HITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIG 160 (515)
Q Consensus 81 gi~~G~~V~~tg~~~~vpvg~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pig 160 (515)
||++|++|++||++++||||++|||||+|++|+|||+++++....++|++..||++++|.++++||+||||+||+|+|||
T Consensus 81 gi~~G~~V~~tg~~~~VpvG~~lLGRV~d~lG~PiDg~g~i~~~~~~pi~~~ap~~~~R~~v~epl~TGikaID~l~Pig 160 (513)
T 3oaa_A 81 DLAEGMKVKCTGRILEVPVGRGLLGRVVNTLGAPIDGKGPLDHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIG 160 (513)
T ss_dssp SCCTTCEEECCSCSSEEECSGGGTTCEEETTSCBTTCSCSCCCSCEEESSCCCCCSSSCCCCCCBCCCSCHHHHHHSCCB
T ss_pred CCCCCCEEEEcCCCCeEeeCHHHhccchhhcCcCccCCCCCCccceeecccCCCCccccCCcCcccccceeeeccccccc
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHh
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAY 240 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~ 240 (515)
||||++|||++|||||+|++++|+||++.|++|||++||||++||++|+++++++|+|+||++|++|+|+||.+|+++||
T Consensus 161 rGQR~~Ifg~~g~GKT~l~l~~I~n~~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a~~ 240 (513)
T 3oaa_A 161 RGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPY 240 (513)
T ss_dssp TTCBCEEEESSSSSHHHHHHHHHHTTSSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHHHH
T ss_pred cCCEEEeecCCCCCcchHHHHHHHhhccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCC
Q psy2894 241 SGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGK 320 (515)
Q Consensus 241 ~a~~iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~ 320 (515)
+|||+||||||+|+|||++|||+||||+||||||+++||||+++|||||+||+||||+||||++++.+++++.+|+..|+
T Consensus 241 ~a~tiAEyfrd~G~dVLli~Dsltr~A~A~REisl~lgepP~r~gYP~~vf~~~srLlERAg~~~~~~~~~~~~~~~~g~ 320 (513)
T 3oaa_A 241 AGCAMGEYFRDRGEDALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLERAARVNAEYVEAFTKGEVKGK 320 (513)
T ss_dssp HHHHHHHHHHHTTCEEEEEEETHHHHHHHHHHHHHHTTCCBCTTSCBTTHHHHHHHHHTTCSEECHHHHHHHHTTSCCSC
T ss_pred HHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHHhcCCCCcccCCCchhhhhcchHHHHHhhcccccchhccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998766777766553345
Q ss_pred CCceeeeeEEeecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHHHhh
Q psy2894 321 TGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQY 400 (515)
Q Consensus 321 ~GSiT~l~~v~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~la~y 400 (515)
+||||++|+|+|++||++||||||++|||||||||||+||++||||||||+.|+||+|++++.++|+++|+++|+.|++|
T Consensus 321 ~GSITal~~V~~~~dD~s~pIp~~~~si~DGqIvLsr~La~~giyPAIdvl~SvSRv~~~~~~~~~~~va~~lr~~la~y 400 (513)
T 3oaa_A 321 TGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETNLFNAGIRPAVNPGISVSRVGGAAQTKIMKKLSGGIRTALAQY 400 (513)
T ss_dssp CEEEEECCEEECGGGCCSSHHHHHHHHHSSEEEEECHHHHTTSCCSCBCTTTCEESSGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEEEEEcCCCCccCcchHhhhccCCeEEEEehhHHhCCCCCccCccccccccCcccccHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCHHHHHHHHhhHHHhhcccccccCCCCHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHHhhch
Q psy2894 401 RELAAFSQFSSDLDLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFMKTCQN 480 (515)
Q Consensus 401 ~el~~~~~~g~~ld~~~~~~l~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~~~G~ld~v~~~~v~~f~~~l~~~l~~~~~ 480 (515)
+|+++|++||+++|++++.+++++++|++||+|++++++++++|+..||++.|||||++|++++.+|++.+++|++..++
T Consensus 401 ~el~~~~~~g~~ld~~~~~~l~~~~~i~~fL~Q~~~~~~~~~e~~~~l~a~~~g~ld~~~~~~~~~~~~~~~~~~~~~~~ 480 (513)
T 3oaa_A 401 RELAAFSQFASDLDDATRKQLDHGQKVTELLKQKQYAPMSVAQQSLVLFAAERGYLADVELSKIGSFEAALLAYVDRDHA 480 (513)
T ss_dssp HHHHHHHTTCCSCCHHHHHHHHHHHHHHHHTCCCSSCCCCTTHHHHHHHHHHSCTTTTTCCHHHHHHHHHHHHHHTGGGC
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcCCCccCCHHHHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHhhh
Q psy2894 481 SILEKIKNVNEFNADIEDSLTTILINFKKSY 511 (515)
Q Consensus 481 ei~~~i~~~~~l~~e~~~~l~~~~~~f~~~f 511 (515)
++++.|.+++++++++++.|++++++|++..
T Consensus 481 ~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~ 511 (513)
T 3oaa_A 481 PLMQEINQTGGYNDEIEGKLKGILDSFKATQ 511 (513)
T ss_dssp HHHHHHHHHCCCCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999998763
No 2
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=100.00 E-value=7.6e-136 Score=1092.13 Aligned_cols=500 Identities=58% Similarity=0.967 Sum_probs=475.7
Q ss_pred CCChHHHHHHHHHHHHcccCccCccceeEEEEEECcEEEEEecCCCcccCEEEE-cCCceEEEEEEeCCeEEEEEeCCCC
Q psy2894 2 KINASEISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEF-PGNVFGLALNLERDSIGAVILGKYE 80 (515)
Q Consensus 2 ~~~~~~~~~~l~~~i~~~~~~~~~~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~-~~~~~g~V~~l~~~~v~~~~~~~~~ 80 (515)
.++++|++++|++++++|+.......+|+|++|.|++++|+|++++++||+|+| .++..|+|++++++.+.+++|+++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~V~~V~g~iv~v~gl~~~~~gEl~~i~~~g~~g~v~~l~~~~v~~~~~~~~~ 93 (515)
T 2r9v_A 14 RINPGEITKVLEEKIKSFEEKIDLEDTGKVIQVGDGIARAYGLNKVMVSELVEFVETGVKGVAFNLEEDNVGIIILGEYK 93 (515)
T ss_dssp ---------------CTTCCCSCTTTEEEEEEEETTEEEEEECTTCCTTEEEEETTTCCEEEEEECCTTCEEEEEESCCT
T ss_pred ccCHHHHHHHHHHHHHhcCCCCcceeeeEEEEEECcEEEEecCCCCCCCCEEEEecCCeEEEEEEecCCeEEEEEecCcc
Confidence 478999999999999999998888999999999999999999999999999999 5677899999999999999999999
Q ss_pred CCCCCCEEEEcCCccccccCccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCcccccccccccccccccc
Q psy2894 81 HITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIG 160 (515)
Q Consensus 81 gi~~G~~V~~tg~~~~vpvg~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pig 160 (515)
||++|++|++||++++||||++|||||+|++|+|||+++++...++||++..+|++++|.++++||+||||+||+|+|||
T Consensus 94 gi~~G~~V~~tg~~~~vpvG~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~P~~~~R~~v~epl~TGiraID~l~Pig 173 (515)
T 2r9v_A 94 DIKEGHTVRRLKRIIEVPVGEELLGRVVNPLGEPLDGKGPINAKNFRPIEIKAPGVIYRKPVDTPLQTGIKAIDSMIPIG 173 (515)
T ss_dssp TCCTTCEEEEEEEECEEEESGGGTTCEECTTSCBCSSSCCCCCSEEEESCCCCCCGGGBCCCCSEECCSCHHHHHHSCEE
T ss_pred cccCCCEEEEeCCcceeecCccceeeEEcCCCCCcCCCCCCCccceeecccCCCCcccccCCCcchhcCccccccccccc
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHh
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAY 240 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~ 240 (515)
||||++|||++|+|||+|++++|+||+++|++|||++||||++||++|+++++++|+|+||+||++|+|+||.+|+++||
T Consensus 174 rGQR~~I~g~~g~GKT~Lal~~I~~~~~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~ 253 (515)
T 2r9v_A 174 RGQRELIIGDRQTGKTAIAIDTIINQKGQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAPY 253 (515)
T ss_dssp TTCBEEEEEETTSSHHHHHHHHHHTTTTTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCC
Q psy2894 241 SGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGK 320 (515)
Q Consensus 241 ~a~~iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~ 320 (515)
+|||+||||||+|+|||++|||+||||+||||||+++||||+++|||||+||+|+||+||||++++. .|
T Consensus 254 ~a~tiAEyfrd~G~dVLli~DslTr~A~A~REisl~lgepP~r~gYp~~vf~~~~rLlERAg~~~~~----------~~- 322 (515)
T 2r9v_A 254 AGCAMGEYFAYSGRDALVVYDDLSKHAVAYRQLSLLMRRPPGREAYPGDIFYLHSRLLERAVRLNDK----------LG- 322 (515)
T ss_dssp HHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHTSCCCTTCCCCCCCHHHHHHHHHTTCEEBCTT----------TT-
T ss_pred HHHHHHHHHHHcCCcEEEEeccHHHHHHHHHHHhhhcCCCCCcccCChhHHHHhHHHHHHHhhcccc----------CC-
Confidence 9999999999999999999999999999999999999999999999999999999999999998652 24
Q ss_pred CCceeeeeEEeecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHHHhh
Q psy2894 321 TGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQY 400 (515)
Q Consensus 321 ~GSiT~l~~v~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~la~y 400 (515)
+||||+||+|++++||++||||||++|||||||||||+||++||||||||+.|+||+|+.++.++|+++++++|+.|++|
T Consensus 323 ~GSITal~~v~~~~~D~s~pI~~~~~si~DGqI~Lsr~La~~g~yPAIdvl~SvSRv~~~~~~~~~~~~a~~lr~~la~y 402 (515)
T 2r9v_A 323 GGSLTALPIVETQANDISAYIPTNVISITDGQIYLEPGLFYAGQRPAINVGLSVSRVGGSAQIKAMKQVAGMLRIDLAQY 402 (515)
T ss_dssp SCEEEEEEEEEESTTCTTSHHHHHHHHTSSEEEEBCHHHHHHTCSSCBCTTTCEEGGGTTTSCHHHHHHHHHHHHHHHHH
T ss_pred CcceEEeeeeeccCCCccccchhhhccccceEEEEchHHHhCCCCCeeccccccccCCcccCCHHHHHHHHHHHHHHhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCHHHHHHHHhhHHHhhcccccccCCCCHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHHhhch
Q psy2894 401 RELAAFSQFSSDLDLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFMKTCQN 480 (515)
Q Consensus 401 ~el~~~~~~g~~ld~~~~~~l~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~~~G~ld~v~~~~v~~f~~~l~~~l~~~~~ 480 (515)
+|+++|+++|+++|++++.+++++++|++||+|++++++++++|+..+|++.+|+||++|++++.+|++.++++++..++
T Consensus 403 ~el~~~~~~G~~l~~~~~~~l~~~~~i~~fL~Q~~~~~~~~~e~~~~l~~~~~g~ld~i~~~~i~~~~~~~~~~~~~~~~ 482 (515)
T 2r9v_A 403 RELETFAQFATELDPATRAQIIRGQRLMELLKQEQYSPMPVEEQVVVLFAGVRGYLDDLPVEEVRRFEKEFLRFMHEKHQ 482 (515)
T ss_dssp HHHHTTGGGCSCCCHHHHHHHHHHHHHHHHTCCCTTCCCCHHHHHHHHHHHHTTTTTTSCGGGHHHHHHHHHHHHHHHCH
T ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHhhhh
Q psy2894 481 SILEKIKNVNEFNADIEDSLTTILINFKKSYD 512 (515)
Q Consensus 481 ei~~~i~~~~~l~~e~~~~l~~~~~~f~~~f~ 512 (515)
++++.|.++++|++++++.|++++++|++.|.
T Consensus 483 ~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~ 514 (515)
T 2r9v_A 483 DILDDIKTKKELTSETEEKLKKAIEEFKTTFR 514 (515)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999998874
No 3
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=100.00 E-value=1.8e-135 Score=1090.64 Aligned_cols=500 Identities=55% Similarity=0.916 Sum_probs=468.9
Q ss_pred CCChHHHHHHHHHHHHcccCccCccceeEEEEEECcEEEEEecCCCcccCEEEEcCCceEEEEEEeCCeEEEEEeCCCCC
Q psy2894 2 KINASEISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVFGLALNLERDSIGAVILGKYEH 81 (515)
Q Consensus 2 ~~~~~~~~~~l~~~i~~~~~~~~~~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~~~~~g~V~~l~~~~v~~~~~~~~~g 81 (515)
+++++|++++|++++++|+.......+|+|++|.|++++|+|++++++||+|+|.++..|+|++++++.+.+++|+++.|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~V~~v~g~iv~v~gl~~~~~ge~~~i~~g~~g~v~~l~~~~v~~~~~~~~~g 81 (510)
T 2ck3_A 2 KTGTAEVSSILEERILGADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKL 81 (510)
T ss_dssp ----------------------CCSSEEEEEEEETTEEEEEECTTCBTTCEEEETTSCEEEEEEECSSCEEEEESSCGGG
T ss_pred CCCHHHHHHHHHHHHHhcCCCcceeEEeEEEEEECcEEEEeeCCCCCCCCEEEECCCCeEEEEeccCCeEEEEEECCccc
Confidence 46889999999999999999888899999999999999999999999999999987788999999999999999999999
Q ss_pred CCCCCEEEEcCCccccccCccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccC
Q psy2894 82 ITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGK 161 (515)
Q Consensus 82 i~~G~~V~~tg~~~~vpvg~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigr 161 (515)
|++|++|++||++++||||++|||||+|++|+|||+++++...+++|++..+|++++|.++++||+||||+||+|+||||
T Consensus 82 i~~G~~V~~tg~~~~vpvg~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~Pigr 161 (510)
T 2ck3_A 82 IKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGR 161 (510)
T ss_dssp CCTTCEEEECCCCCEEEESGGGTTCEECTTSCBCSSSCCCCCSEEEESSCCCCCSTTBCCCCSBCCCSCHHHHHHSCCBT
T ss_pred ccCCCEEEEeCCcceeecCccceeeEEccCCcCcCCCCCCCccceeecccCCCCcccccccCccccccceeecccccccc
Confidence 99999999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred CcceeeecCCCCCccHHHHHHHHHhcC--------CCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHH
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQKN--------KNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSAS 233 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~~~--------~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~ 233 (515)
|||++|||++|+|||+|++++|+||+. +|++|||++||||++||++|+++++++|+|+||+||++|+|+||.
T Consensus 162 GQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~ 241 (510)
T 2ck3_A 162 GQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAP 241 (510)
T ss_dssp TCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHH
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHH
Confidence 999999999999999999999999976 889999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhccc
Q psy2894 234 MQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYT 313 (515)
Q Consensus 234 ~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~ 313 (515)
+|+++||+|||+||||||+|+|||++|||+||||+||||||+++||||+++|||||+||+|+||+||||++++.
T Consensus 242 ~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A~A~REisl~lgepP~r~gYpg~vf~~~~rLlERAg~~~~~------ 315 (510)
T 2ck3_A 242 LQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDA------ 315 (510)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHHTTCCCCGGGCCTTHHHHHHHHHTTCEEBCGG------
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHHHHHHHHHHHHhcCCCCccCCcCchHHHhhHHHHHhhhccccc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998653
Q ss_pred CCcccCCCCceeeeeEEeecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHH
Q psy2894 314 NGKVTGKTGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNI 393 (515)
Q Consensus 314 ~~~~~g~~GSiT~l~~v~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~l 393 (515)
.+ +||||++|+|++++||++||||||++|||||||||||+||++||||||||+.|+||+|+.++.++|+++++++
T Consensus 316 ----~~-~GSITal~~v~~~~dD~s~pI~~~~~si~DgqI~Lsr~La~~gi~PAIdvl~SvSRv~~~~~~~~~~~~a~~l 390 (510)
T 2ck3_A 316 ----FG-GGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTM 390 (510)
T ss_dssp ----GT-SCEEEEEEEEECSTTCTTSHHHHHHHHHSSEEEEBCHHHHHHTCSSCBCTTTCEESSGGGGSCHHHHHHHHHH
T ss_pred ----CC-CcceeEeeeeccCCCCccccchHhhhcccceEEEEehhHhhCCCCCcccchhcccccccccCCHHHHHHHHHH
Confidence 34 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHhccCCCHHHHHHHHhhHHHhhcccccccCCCCHHHHHHHHHHHhcCcccccchhHHHHHHHHHHH
Q psy2894 394 RTDLAQYRELAAFSQFSSDLDLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYK 473 (515)
Q Consensus 394 r~~la~y~el~~~~~~g~~ld~~~~~~l~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~~~G~ld~v~~~~v~~f~~~l~~ 473 (515)
|+.|++|+|+++|+++|+++|++++.+++++++|++||+|++++++++++|+..||++.+|++|++|++++.+|++.+++
T Consensus 391 r~~la~y~el~~~~~~G~~l~~~~~~~l~~~~~i~~fL~Q~~~~~~~~~~~~~~l~~~~~g~l~~i~~~~i~~~~~~~~~ 470 (510)
T 2ck3_A 391 KLELAQYREVAAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLS 470 (510)
T ss_dssp HHHHHHHHHHGGGSSSCSSSCHHHHHHHHHHHHHHHTTCCCSSCCCCHHHHHHHHHHHHTTSSTTSCGGGHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhchHHHHHHHhccCCCHHHHHHHHHHHHHHHhhhh
Q psy2894 474 FMKTCQNSILEKIKNVNEFNADIEDSLTTILINFKKSYD 512 (515)
Q Consensus 474 ~l~~~~~ei~~~i~~~~~l~~e~~~~l~~~~~~f~~~f~ 512 (515)
|++..++++++.|.++++|++++++.|++++++|++.|.
T Consensus 471 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~ 509 (510)
T 2ck3_A 471 HVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAGFE 509 (510)
T ss_dssp HHHHHCHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999874
No 4
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=100.00 E-value=9.5e-136 Score=1092.23 Aligned_cols=501 Identities=51% Similarity=0.851 Sum_probs=469.3
Q ss_pred CCCChHHHHHHHHHHHHcccCccCccceeEEEEEECcEEEEEecCCCcccCEEEEcCCceEEEEEEeCCeEEEEEeCCCC
Q psy2894 1 MKINASEISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVFGLALNLERDSIGAVILGKYE 80 (515)
Q Consensus 1 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~~~~~g~V~~l~~~~v~~~~~~~~~ 80 (515)
|+++++|++++|++++++|+.......+|+|++|.|++++|+|++++++||+|+|.++..|+|++++++.+.+++|+++.
T Consensus 2 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~G~V~~v~g~iv~v~gl~~~~~ge~~~i~~g~~g~v~~l~~~~v~~~~~~~~~ 81 (507)
T 1fx0_A 2 ATIRADEISKIIRERIEGYNREVKVVNTGTVLQVGDGIARIHGLDEVMAGELVEFEEGTIGIALNLESNNVGVVLMGDGL 81 (507)
T ss_dssp -----------------------CTTTEEEECCCCSSEEEEEECTTCCTTCCEEETTCCEEEEEEECSSEEEEEECSCGG
T ss_pred CCCCHHHHHHHHHHHHHhccCCcceeEEEEEEEEeCCEEEEEECCCccCCCEEEECCCceEEEEeccCCeEEEEEecCcc
Confidence 57899999999999999999988889999999999999999999999999999998778899999999999999999999
Q ss_pred CCCCCCEEEEcCCccccccCccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCcccccccccccccccccc
Q psy2894 81 HITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIG 160 (515)
Q Consensus 81 gi~~G~~V~~tg~~~~vpvg~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pig 160 (515)
||++|++|++||++++||||++|||||+|++|+|||+++++...+++|++..+|++++|.++++||+||||+||+|+|||
T Consensus 82 gi~~G~~V~~tg~~~~vpvG~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~Pig 161 (507)
T 1fx0_A 82 MIQEGSSVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEITASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAMIPVG 161 (507)
T ss_dssp GCCTTCEEECCCCCCEEEESSSCSSCCCCSSSCCSSSSCCCCCSEEEESSCCCCCSSSBCCCCSBCCCSCTTTTTTSCCB
T ss_pred CCcCCCEEEEeCCcceeecCccceeEEEccCCcCCCCCCCCCCCceeeccCCCCCcccccccCCcccccceecccccccc
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHh
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAY 240 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~ 240 (515)
||||++|||++|+|||+|++++|+||+++|++|||++||||++||++|+++++++|+|+||+||++|+|+||.+|+++||
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~ 241 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPY 241 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHHH
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCC
Q psy2894 241 SGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGK 320 (515)
Q Consensus 241 ~a~~iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~ 320 (515)
+|||+||||||+|+|||++|||+||||+||||||+++||||+++||||++||+|+||+||||++++. .|
T Consensus 242 ~a~tiAEyfrd~G~dVLli~Dsltr~A~A~REisl~lge~P~~~gYp~~vf~~~srLlERAg~~~~~----------~~- 310 (507)
T 1fx0_A 242 TGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSL----------LG- 310 (507)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECHHHHHHHHHHHHHHTTCCCCGGGCCSCSSTTTTTTGGGCCBBCTT----------TT-
T ss_pred HHHHHHHHHHHcCCcEEEEEecHHHHHHHHHHHHHhcCCCCccccCCchHhhhhHHHHHhhhhcccc----------CC-
Confidence 9999999999999999999999999999999999999999999999999999999999999998652 24
Q ss_pred CCceeeeeEEeecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHHHhh
Q psy2894 321 TGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQY 400 (515)
Q Consensus 321 ~GSiT~l~~v~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~la~y 400 (515)
+||||++|+|++++||++||||||++|||||||||||+||++||||||||+.|+||+|+.++.++|+++++++|+.|++|
T Consensus 311 ~GSITal~~v~~~~~D~s~pI~~~~~si~DgqIvLsr~La~~g~yPAIdvl~S~SR~~~~~~~~~~~~~a~~lr~~la~y 390 (507)
T 1fx0_A 311 EGSMTALPIVETQAGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKKVAGKLKLELAQF 390 (507)
T ss_dssp SCEEEECCEEECSTTCTTSHHHHHHHTTSSCBCCCCSSSSSSSCSSCCCTTTCCCTTGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CcceeeeeeeeccCCCcccchHHHHHhhcCcEEEEehhHhhCCCCCccchhhhhccccccCCCHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCHHHHHHHHhhHHHhhcccccccCCCCHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHHhhch
Q psy2894 401 RELAAFSQFSSDLDLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFMKTCQN 480 (515)
Q Consensus 401 ~el~~~~~~g~~ld~~~~~~l~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~~~G~ld~v~~~~v~~f~~~l~~~l~~~~~ 480 (515)
+|+++|+++|+++|++++.+++++++|++||+|++++++++++|+..+|++.+|++|++|++++.+|++.+++|++..++
T Consensus 391 ~el~~~~~~G~~l~~~~~~~l~~~~~i~~fL~Q~~~~~~~~~e~~~~l~~~~~g~l~~i~~~~i~~~~~~~~~~~~~~~~ 470 (507)
T 1fx0_A 391 AELEAFAQFASDLDKATQNQLARGQRLRELLKQPQSAPLTVEEQVMTIYTGTNGYLDSLELDQVRKYLVELRTYVKTNKP 470 (507)
T ss_dssp HHHTTTGGGCSSCCHHHHHHHHHHHHHHHHHCCCTTCCCCHHHHHHHHHHHHTTSSSSSCHHHHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHhccCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhhchhcCCCHHHHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHhhhh
Q psy2894 481 SILEKIKNVNEFNADIEDSLTTILINFKKSYD 512 (515)
Q Consensus 481 ei~~~i~~~~~l~~e~~~~l~~~~~~f~~~f~ 512 (515)
++++.|.++++|+++++++|++++++|++.|.
T Consensus 471 ~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~ 502 (507)
T 1fx0_A 471 EFQEIISSTKTFTEEAEALLKEAIQEQMERFL 502 (507)
T ss_dssp HHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999883
No 5
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=100.00 E-value=1.4e-135 Score=1089.86 Aligned_cols=500 Identities=57% Similarity=0.958 Sum_probs=464.8
Q ss_pred CCCChHHHHHHHHHHHHcccCccCccceeEEEEEECcEEEEEecCCCcccCEEEEcCCceEEEEEEeCCeEEEEEeCCCC
Q psy2894 1 MKINASEISTIIQEQIKNFNNTTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPGNVFGLALNLERDSIGAVILGKYE 80 (515)
Q Consensus 1 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~~~~~g~V~~l~~~~v~~~~~~~~~ 80 (515)
|+++++|++++|++++++|+.......+|+|++|.|++++|+|++++++||+|+|.++..|+|++++++.+.+++|+++.
T Consensus 1 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~G~V~~v~g~iv~v~gl~~~~~ge~~~i~~g~~g~v~~l~~~~v~~~~~~~~~ 80 (502)
T 2qe7_A 1 MSIRPEEISALIKKQIENYEADLEVVEVGTVIQVGDGIARVHGLEKVMAGELLEFENGVMGMAQNLEEDNVGVVILGPYT 80 (502)
T ss_dssp --------------------------CEEEEEEEETTEEEEECCTTCBTTEEEEETTSCEEEEEEEETTEEEEEECSCCS
T ss_pred CCCCHHHHHHHHHHHHHhcCCCcceeEEEEEEEecCcEEEEEECCCCCCCCEEEECCCCEEEEEEecCCeEEEEEecCcc
Confidence 67899999999999999999988889999999999999999999999999999998777899999999999999999999
Q ss_pred CCCCCCEEEEcCCccccccCccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCcccccccccccccccccc
Q psy2894 81 HITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIG 160 (515)
Q Consensus 81 gi~~G~~V~~tg~~~~vpvg~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pig 160 (515)
||++|++|++||++++||||++|||||+|++|+|||+++++...+++|++..+|++++|.++++||+||||+||+|+|||
T Consensus 81 gi~~G~~V~~tg~~~~vpvG~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~Pig 160 (502)
T 2qe7_A 81 EIREGTQVKRTGRIMEVPVGEALLGRVVNPLGQPLDGRGPIETAEYRPIESPAPGVMDRKSVHEPLQTGIKAIDSMIPIG 160 (502)
T ss_dssp SCCTTCEEEEEEEESEEECSGGGTTCEECTTCCBSSCSCCCCCCCEEESSCCCCCTTSBCCCCSBCCCSCHHHHHSSCCB
T ss_pred CCcCCCEEEEeCCcceEEcccccceEEEccCCCCCCCCCCCCCCceeeccCCCCCcccccCCCCccccceeecccccccc
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHh
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAY 240 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~ 240 (515)
||||++|||++|+|||+|++++|+||+++|++|||++||||++||++|+++++++|+|+||+||++|+|+||.+|+++||
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~~ 240 (502)
T 2qe7_A 161 RGQRELIIGDRQTGKTTIAIDTIINQKGQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAPY 240 (502)
T ss_dssp TTCBCEEEECSSSCHHHHHHHHHHGGGSCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHHHH
T ss_pred cCCEEEEECCCCCCchHHHHHHHHHhhcCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCC
Q psy2894 241 SGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGK 320 (515)
Q Consensus 241 ~a~~iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~ 320 (515)
+|||+||||||+|+|||++|||+||||+||||||+++||||+++|||||+||+|+||+||||++++. .+
T Consensus 241 ~a~tiAEyfrd~G~dVLl~~Dsltr~A~A~REisl~lgepP~~~gYpg~vf~~~~rL~ERAg~~~~~----------~~- 309 (502)
T 2qe7_A 241 AGCAMGEYFMYKGKHALVVYDDLSKQAAAYRELSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDE----------KG- 309 (502)
T ss_dssp HHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHTTTTCCCCSTTSCTTHHHHHHHHHTSCCBBCTT----------TT-
T ss_pred HHHHHHHHHHHcCCcEEEEEecHHHHHHHHHHHHHhcCCCCccCCCCchHHHHHHHHHHhhhccccc----------CC-
Confidence 9999999999999999999999999999999999999999999999999999999999999998652 24
Q ss_pred CCceeeeeEEeecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHHHhh
Q psy2894 321 TGSLTAIPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQY 400 (515)
Q Consensus 321 ~GSiT~l~~v~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~la~y 400 (515)
+||||++|+|++++||++||||||++|||||||||||+||++||||||||+.|+||+|+.++.++|+++++++|+.|++|
T Consensus 310 ~GSITal~~v~~~~dD~s~pI~~~~~si~DgqI~Lsr~La~~g~~PAIdvl~S~SRv~~~~~~~~~~~~a~~lr~~la~y 389 (502)
T 2qe7_A 310 GGSLTALPFIETQAGDVSAYIPTNVISITDGQIFLESDLFYSGVRPAVNVGISVSRVGGAAQIKAMKKVAGTLRLDLAQY 389 (502)
T ss_dssp CCEEEEEEEEECSTTCCSSHHHHHHHTTSSEEEEECHHHHTTTCSSCBCTTTCEESSGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CcceeEEEEEEccCCCcccchhHHHhhhcCcEEEEehhHhhCCCCceeCcccccccCCCccCCHHHHHHHHHHHHHHhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCHHHHHHHHhhHHHhhcccccccCCCCHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHHhhch
Q psy2894 401 RELAAFSQFSSDLDLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFMKTCQN 480 (515)
Q Consensus 401 ~el~~~~~~g~~ld~~~~~~l~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~~~G~ld~v~~~~v~~f~~~l~~~l~~~~~ 480 (515)
+|+++|+++|+++|++++.+++++++|++||+|++++++++++|+..+|++.+|++|++|++++.+|++.+++|++..++
T Consensus 390 ~el~~~~~~G~~l~~~~~~~l~~~~~i~~fL~Q~~~~~~~~~~~~~~l~~~~~g~l~~i~~~~i~~~~~~~~~~~~~~~~ 469 (502)
T 2qe7_A 390 RELQAFAQFGSDLDKATQAKLNRGERTVEILKQDEHKPMPVEEQVISIYAVTNGFMDDIPVEDVRRFEEELLSFMRANKD 469 (502)
T ss_dssp HHGGGSTTCCCCTTTTTTTTHHHHHHHHHHHCCCTTCCCCHHHHHHHHHHHHTTTTTSSCSTTHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHhhhhh
Q psy2894 481 SILEKIKNVNEFNADIEDSLTTILINFKKSYDA 513 (515)
Q Consensus 481 ei~~~i~~~~~l~~e~~~~l~~~~~~f~~~f~~ 513 (515)
++++.|.++++|+++ ++|++++++|++.|..
T Consensus 470 ~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~ 500 (502)
T 2qe7_A 470 SLLDHIRQTGELPDT--KELDAAIEEFKKGFTP 500 (502)
T ss_dssp HHHHHHHSSCCCCCT--THHHHHHHTTCSCSCC
T ss_pred HHHHHHHhcCCCCHH--HHHHHHHHHHHHhhcc
Confidence 999999999999999 9999999999988753
No 6
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=100.00 E-value=5.6e-117 Score=937.63 Aligned_cols=432 Identities=23% Similarity=0.309 Sum_probs=411.6
Q ss_pred cceeEEEEEECcEEEEEecCCCcccCEEEEc--CC--ceEEEEEEeCCeEEEEEeCCCCCCC-CCCEEEEcCCccccccC
Q psy2894 26 YNQGKVISVFDGICQIYGLSNAMQGEMLEFP--GN--VFGLALNLERDSIGAVILGKYEHIT-EGDIVKCTGRILEVPIG 100 (515)
Q Consensus 26 ~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~--~~--~~g~V~~l~~~~v~~~~~~~~~gi~-~G~~V~~tg~~~~vpvg 100 (515)
.++|+|++|.|++++++|++++++||+|+|. ++ +.|+|++++++.+.+++|+++.||+ .|++|++||++++||||
T Consensus 10 ~~~g~v~~v~g~~v~v~gl~~~~~ge~v~i~~~~g~~~~geVv~~~~~~~~~~~~~~~~gl~~~g~~V~~tg~~~~vpvg 89 (465)
T 3vr4_D 10 KEYRTIKEVVGPLMAVEKVSGVKYEELIEVRMQNGEIRRGQVLEVQEDKAMVQIFEGTSGINLKNSSVRFLGHPLQLGVS 89 (465)
T ss_dssp -CBCCEEEEETTEEEEESCCSCCTTCEEEEECTTSCEEEEEEEEEESSEEEEEETTCCTTCCTTTCEEEECSSCCEEEEC
T ss_pred ceEEEEEEEECCEEEEecCCCCCcCCEEEEEcCCCCEEEEEEEEEeCCeEEEEEecCccccccCCCEEEECCCcceeecc
Confidence 5789999999999999999999999999994 44 4899999999999999999999999 89999999999999999
Q ss_pred ccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCccHHHH
Q psy2894 101 PELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAI 180 (515)
Q Consensus 101 ~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GKt~l~~ 180 (515)
++|||||+|++|+|||+++++....++|++..||+|++|.++++||+||||+||+|+|||||||++|||++|+|||+| +
T Consensus 90 ~~lLGRV~d~lG~PiD~~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~TGiraID~l~pigrGQr~~Ifgg~G~GKt~L-~ 168 (465)
T 3vr4_D 90 EDMIGRVFDGLGRPKDNGPEILPEKYLDINGEVINPIARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHKEL-A 168 (465)
T ss_dssp GGGTTEEEETTSCBCSCCCCCCCSEEEESSCCCBCTTTEECCCCBCBCSCHHHHTTSCCBTTCBCCEEECTTSCHHHH-H
T ss_pred hhhccceeccCCcccCCCCCCcccceeeccCcccCchhccCcccccccCceEEecccccccCCEEEEeCCCCcChHHH-H
Confidence 999999999999999999999888899999999999999999999999999999999999999999999999999999 5
Q ss_pred HHHHHhcC-----CCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHH-cCC
Q psy2894 181 DIIINQKN-----KNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRD-HGK 254 (515)
Q Consensus 181 ~~i~~~~~-----~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd-~G~ 254 (515)
.+|+||+. .+++|||++||||++||++|++++.++|+|+||++|++|+|+||.+|+++||+|+|+|||||| +|+
T Consensus 169 ~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~ 248 (465)
T 3vr4_D 169 AQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATPRMALTAAEYLAYEKGM 248 (465)
T ss_dssp HHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 78999863 457899999999999999999999999999999999999999999999999999999999999 699
Q ss_pred cEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEeecC
Q psy2894 255 DALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQA 334 (515)
Q Consensus 255 ~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~~~ 334 (515)
|||++|||+||||+|+||||+++||||+++||||++|+.|++||||||+++. ++||||+||+|++++
T Consensus 249 ~VLl~~DslTr~A~A~REisl~lge~P~~~GYp~~vf~~l~~l~ERAg~~~~-------------~~GSIT~i~tv~~~~ 315 (465)
T 3vr4_D 249 HVLVIMTDMTNYAEALREISAARREVPGRRGYPGYLYTNLATLFERAGRIRG-------------LKGSVTQIPILTMPE 315 (465)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHTTCCCCGGGSCTTHHHHHHHHHTSCEEETT-------------CSCEEEEEEEEECGG
T ss_pred eEEEEEcChHHHHHHHHHHHhhcCCCCccccCCchHHHHhHHHHHhhhccCC-------------CCCcEEEEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999832 389999999999999
Q ss_pred CCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccch-----HHHHHHHHHHHHHHHhhHHHHHHHHh
Q psy2894 335 GDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQI-----KFIKKLSSNIRTDLAQYRELAAFSQF 409 (515)
Q Consensus 335 ~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~-----~~~~~~a~~lr~~la~y~el~~~~~~ 409 (515)
||++||||++++|||||||+|||+||++||||||||+.|+||+|..... ++|++++++++..|++|+|+++|+++
T Consensus 316 dD~~~pI~~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~m~~~ig~~~~~~~h~~~a~~l~~~~~~~~el~~i~~~ 395 (465)
T 3vr4_D 316 DDKTHPIPDLTGYITEGQIILTRELYKSGIQPPIDVLPSLSRLKDKGTGAGKTREDHAATMNQLFAAYAQGKQAKELAVV 395 (465)
T ss_dssp GCTTSHHHHHHHHHSSEEEEBCHHHHHTTCSSCBCTTTCEETTGGGSCSTTTSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccchhHHHhhhcCeEEEEcHHHHhCCCCCCCCccccchhcchhhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999876544 89999999999999999999999997
Q ss_pred c--cCCCHHHHHHHHhhHHH-hhcccccccCCCCHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHH
Q psy2894 410 S--SDLDLVTRKQLDRGARV-TELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFM 475 (515)
Q Consensus 410 g--~~ld~~~~~~l~~~~~i-~~~L~Q~~~~~~~~~~~~~~l~~~~~G~ld~v~~~~v~~f~~~l~~~l 475 (515)
. ++|+++++..+.+++++ ++||+|++++++++++++..+| .+|+.+|.+++++|.+++++..
T Consensus 396 ~G~d~L~~~d~~~~~~~~~~~~~fL~Q~~~e~~~~~~~~~~l~----~~l~~~p~~~~~~~~~~~~~~~ 460 (465)
T 3vr4_D 396 LGESALSDIDKIYAKFAERFENEYVNQGFYTNRTITETLDLGW----ELLAMLPRTELKRIKDDLLDKY 460 (465)
T ss_dssp HCTTSCCHHHHHHHHHHHHHHHHTTCCCTTCCCCHHHHHHHHH----HHHTTSCTTTCTTSCHHHHHHH
T ss_pred cCCCCCCHHHHHHHHhhHHHHHHHhCCCCCCCCCHHHHHHHHH----HHHhhCCHHHHHHHHHHHHHHh
Confidence 4 68999999999999998 5899999999999999999998 4788899999999999998764
No 7
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=100.00 E-value=6.3e-116 Score=929.37 Aligned_cols=431 Identities=20% Similarity=0.286 Sum_probs=408.8
Q ss_pred ccceeEEEEEECcEEEEEecCCCcccCEEEEc--CC--ceEEEEEEeCCeEEEEEeCCCCCCC-CCCEEEEcCCcccccc
Q psy2894 25 IYNQGKVISVFDGICQIYGLSNAMQGEMLEFP--GN--VFGLALNLERDSIGAVILGKYEHIT-EGDIVKCTGRILEVPI 99 (515)
Q Consensus 25 ~~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~--~~--~~g~V~~l~~~~v~~~~~~~~~gi~-~G~~V~~tg~~~~vpv 99 (515)
..++|+|++|.|++++++|++++++||+|+|. ++ ..|+|++++++.+.+++|+++.||+ .|++|++||++++|||
T Consensus 5 ~~~~g~V~~v~g~~v~v~gl~~~~~ge~v~i~~~~g~~~~geVv~~~~~~~~~~~~~~~~gl~~~g~~V~~tg~~~~vpv 84 (464)
T 3gqb_B 5 KKEYTGITYISGPLLFVENAKDLAYGAIVDIKDGTGRVRGGQVIEVSEEYAVIQVFEETTGLDLATTSVSLVEDVARLGV 84 (464)
T ss_dssp CCCBCCEEEEETTEEEEESCTTSCTTCEEEEECTTSCEEEEEEEEEESSEEEEEESSCCTTCCSSSCEEEEEESSCEEEE
T ss_pred cceeeEEEEEECCEEEEecCCCCCcCCEEEEEcCCCCEEEEEEEEEeCCeEEEEEecCccccccCCCEEEECCCCcEEEe
Confidence 45789999999999999999999999999993 44 4899999999999999999999999 8999999999999999
Q ss_pred CccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCccHHH
Q psy2894 100 GPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIA 179 (515)
Q Consensus 100 g~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GKt~l~ 179 (515)
|++|||||+|++|+|||+++++....++|++..||+|++|.++++||+||||+||+|+|||||||++|||++|+|||+|
T Consensus 85 g~~lLGRV~d~lG~PiD~~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~TGiraID~l~pigrGQr~~Ifgg~G~GKt~L- 163 (464)
T 3gqb_B 85 SKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNTLVRGQKLPIFSGSGLPANEI- 163 (464)
T ss_dssp CSTTTTEEEETTCCBCSSSCCCCCSEEEETTCCCBCGGGBCCCCCBCBCSCHHHHTTSCCBTTCBCCEEEETTSCHHHH-
T ss_pred ChHhcCCEeccCCcccCCCccccCcceeeccCCCCChhhccCccccccCcceeeecccccccCCEEEEecCCCCCchHH-
Confidence 9999999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcC------------CCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHH
Q psy2894 180 IDIIINQKN------------KNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGE 247 (515)
Q Consensus 180 ~~~i~~~~~------------~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE 247 (515)
+.+|+||+. .+++|||++||||++||++|++++.++|+|+||++|++|+|+||.+|+++||+|||+||
T Consensus 164 ~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p~~~r~~~~~~a~tiAE 243 (464)
T 3gqb_B 164 AAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTIERILTPRMALTVAE 243 (464)
T ss_dssp HHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 588999864 35689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH-cCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceee
Q psy2894 248 YFRD-HGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTA 326 (515)
Q Consensus 248 ~frd-~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~ 326 (515)
|||| +|+|||++|||+||||+|+||||+++||||+++||||++|+.|++||||||+++. ++||||+
T Consensus 244 yfrd~~G~~VLl~~DdlTr~A~A~REisl~lge~P~~~GYp~~~f~~l~~l~ERag~~~~-------------~~GSIT~ 310 (464)
T 3gqb_B 244 YLAFEHDYHVLVILTDMTNYSEALREIGAAREEIPGRRGYPGYMYTDLATIYERAGVVEG-------------KKGSVTQ 310 (464)
T ss_dssp HHHHTTCCEEEEEEETHHHHHHHHHHHHHTTTCCBCGGGSBTTHHHHHHHHHTSCBCBTT-------------CSCEEEE
T ss_pred HHHHhcCCeEEEEEcChHHHHHHHHHHHHhcCCCCccccCCchHHHHhHHHHHhhcccCC-------------CCCcEEE
Confidence 9998 6999999999999999999999999999999999999999999999999999832 3899999
Q ss_pred eeEEeecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccch-----HHHHHHHHHHHHHHHhhH
Q psy2894 327 IPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQI-----KFIKKLSSNIRTDLAQYR 401 (515)
Q Consensus 327 l~~v~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~-----~~~~~~a~~lr~~la~y~ 401 (515)
+|+|++++||++||||++++|||||||+|||+||++||||||||+.|+||+|..... ++|+++|++++..|++|+
T Consensus 311 l~~v~~~~dD~~~pi~~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~m~~~ig~~~~~~~h~~~a~~l~~~~~~~~ 390 (464)
T 3gqb_B 311 IPILSMPDDDRTHPIPDLTGYITEGQIQLSRELHRKGIYPPIDPLPSLSRLMNNGVGKGKTREDHKQVSDQLYSAYANGV 390 (464)
T ss_dssp EEEEEETTSCTTSHHHHHHHHHSSEEEEBCHHHHHTTCSSCBCTTTCEETTGGGTSSTTTSCTTHHHHHHHHHHHHHHHH
T ss_pred EEEEEccCCCccCchhHHHhhhcCeEEEEcHHHHhCCCCCCcCcccchhhcchhhcCcccCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999877644 899999999999999999
Q ss_pred HHHHHHHhc--cCCCHHHHHHHHhhHHHh-hcccccccCCCCHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHH
Q psy2894 402 ELAAFSQFS--SDLDLVTRKQLDRGARVT-ELLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKF 474 (515)
Q Consensus 402 el~~~~~~g--~~ld~~~~~~l~~~~~i~-~~L~Q~~~~~~~~~~~~~~l~~~~~G~ld~v~~~~v~~f~~~l~~~ 474 (515)
|+++|+++. ++++++++..+.++++++ +||+|+ ++++++++++..+|. +|..+|.++++++.+++++.
T Consensus 391 el~~i~~~~G~d~L~~~d~~~~~~~~~~~~~fL~Q~-~e~~~~~~s~~~l~~----ll~~~p~~~~~~~~~~~~~~ 461 (464)
T 3gqb_B 391 DIRKLVAIIGEDALTENDRRYLQFADAFERFFINQG-QQNRSIEESLQIAWA----LLSMLPQGELKRISKDHIGK 461 (464)
T ss_dssp HHHHHTSSSCSCCCCSHHHHTTHHHHHHHHTTTCCT-TCCCCHHHHHHHHHH----HHTTSCGGGCTTSCHHHHHH
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHhhHHHHHHhcCCC-CCCCCHHHHHHHHHH----HHHhCCHHHHhcCCHHHHHH
Confidence 999999975 689999999999999985 899999 999999999999995 66778888888888888765
No 8
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=100.00 E-value=4.1e-116 Score=935.77 Aligned_cols=437 Identities=22% Similarity=0.291 Sum_probs=392.9
Q ss_pred ccCccceeEEEEEECcEEEEEecCCCcccCEEEEc--CC--ceEEEEEEeCCeEEEEEeCCCCCCCCCCEEEEcCCcccc
Q psy2894 22 TTEIYNQGKVISVFDGICQIYGLSNAMQGEMLEFP--GN--VFGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEV 97 (515)
Q Consensus 22 ~~~~~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~--~~--~~g~V~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~v 97 (515)
++-.+.+|+|++|.|++++|+|++++++||+|+|. ++ ..|+|++++++.+.+++|+++.||++|++|++||++++|
T Consensus 8 ~~~~~~~g~V~~V~g~vv~v~g~~~~~~ge~v~i~~~~g~~~~geV~~~~~~~v~~~~~~~t~gl~~G~~V~~tg~~l~v 87 (469)
T 2c61_A 8 HPMVKEYKTITQIAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGGLDKDCGVIFTGETLKL 87 (469)
T ss_dssp --------------CCEEEEECCSCCCTTCEEEEECTTSCEEEEEEEEECSSEEEEEEC-------------CEEEBCEE
T ss_pred CcccccccEEEEEECcEEEEeeCCCCCcCCEEEEEeCCCCEEEEEEEEEeCCEEEEEEeCCCcCCCCCCEEEEcCCCcEE
Confidence 45578899999999999999999899999999994 44 469999999999999999999999999999999999999
Q ss_pred ccCccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCccH
Q psy2894 98 PIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSS 177 (515)
Q Consensus 98 pvg~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GKt~ 177 (515)
|||++|||||+|++|+|||+++++....++|++..||+|++|.++++||+||||+||+|+|||||||++|||++|+|||+
T Consensus 88 pvg~~lLGRV~d~lG~PiDg~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~TGir~ID~l~pigrGQr~~Ifgg~G~GKt~ 167 (469)
T 2c61_A 88 PASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNE 167 (469)
T ss_dssp EECGGGTTCEEETTSCBSSSCCCCCCSEEEESSSCSSCCBCSCCCCSBCBCSCHHHHTTSCCBTTCBCCEEECTTSCHHH
T ss_pred EccccceeeEEcccCCCCCCCCCCCccccccccCccCCcccccccccccceeeEeeeeeeccccCCEEEEECCCCCCHHH
Confidence 99999999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-----CeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHH-H
Q psy2894 178 IAIDIIINQKNK-----NVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFR-D 251 (515)
Q Consensus 178 l~~~~i~~~~~~-----~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~fr-d 251 (515)
| +.+|+++... +++|||++||||++||++|++++.+.|+|+||++|++|+|+||.+|+++||+|+|+||||| |
T Consensus 168 L-l~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~~~~a~tiAEyfrdd 246 (469)
T 2c61_A 168 I-ALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYLAYE 246 (469)
T ss_dssp H-HHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9 6899987654 5789999999999999999999999999999999999999999999999999999999999 5
Q ss_pred cCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEe
Q psy2894 252 HGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIE 331 (515)
Q Consensus 252 ~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~ 331 (515)
+|+|||+++||+||||+|+||||+++||||+++||||++|+.|++||||||+++. ++||||++|+|+
T Consensus 247 ~G~dVLl~~DsltR~A~A~rEis~~lge~P~~~Gyp~~l~~~l~~l~ERAg~~~~-------------~~GSIT~i~~v~ 313 (469)
T 2c61_A 247 HGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVKG-------------AKGSVTQIPILS 313 (469)
T ss_dssp HCCEEEEEEECHHHHHHHHTTSGGGTTCCTTSTTCCTHHHHHHHHHHTSCEEBTT-------------SSCEEEEEEEEE
T ss_pred cCCeEEEEEeCHHHHHHHHHHHHHhcCCCCcccCcCchhhhhhhhHHhhccccCC-------------CCCceeeeeeee
Confidence 9999999999999999999999999999999999999999999999999999842 379999999999
Q ss_pred ecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCcccccccc-----chHHHHHHHHHHHHHHHhhHHHHHH
Q psy2894 332 TQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAA-----QIKFIKKLSSNIRTDLAQYRELAAF 406 (515)
Q Consensus 332 ~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~-----~~~~~~~~a~~lr~~la~y~el~~~ 406 (515)
+++||++||||++++|||||||+|||+||++||||||||+.|+||+|+.+ +.++|++++.+++..|++|+||++|
T Consensus 314 ~~~dD~~dPI~~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~~~~~ig~~~~~~~~~~~a~~l~~~l~~~~eL~~i 393 (469)
T 2c61_A 314 MPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAGKTREDHKAVSDQMYAGYAEGRDLRGL 393 (469)
T ss_dssp CCSCTTTSCCCCCGGGGTTEEEEBCHHHHHTTCSSCBCTTTCEETTGGGSCSTTTSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcCcchHHHHhhccCcEEEEcHHHHhCCCCCccCccccccccchhhcccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998 8899999999999999999999999
Q ss_pred HHhc--cCCCHHHHHHHHhhHHHhh-cccccccCCCCHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHH
Q psy2894 407 SQFS--SDLDLVTRKQLDRGARVTE-LLKQKQYSPLPVSLIAVILFAINKGFLDDIEIKKILNFESSLYKFMK 476 (515)
Q Consensus 407 ~~~g--~~ld~~~~~~l~~~~~i~~-~L~Q~~~~~~~~~~~~~~l~~~~~G~ld~v~~~~v~~f~~~l~~~l~ 476 (515)
.++. ++++++++..++++++|++ ||+|++++++++++++..+|+ +|+.+|.+++.+|..++++++.
T Consensus 394 ~~~~G~~~l~d~~~~~l~~~~~i~~~fL~Q~~~~~~~~~et~~~l~~----~l~~~~~~~~~~~~~~~~~~~~ 462 (469)
T 2c61_A 394 VAIVGKEALSERDTKFLEFADLFEDKFVRQGRNENRTIEDTLEIGWQ----ILTHLPENQLGRIDNKYIQKYH 462 (469)
T ss_dssp HHHHCGGGSCHHHHHHHHHHHHHHHHTTCCCTTCCCCHHHHHHHHHH----HHTTSCGGGCTTSCHHHHHHHS
T ss_pred HhhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH----HHHhCCHHHHHHHHHHHHHHHh
Confidence 9974 6899999999999999997 999999999999999999996 5789999999999999999875
No 9
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=100.00 E-value=2.8e-108 Score=875.31 Aligned_cols=425 Identities=23% Similarity=0.345 Sum_probs=396.2
Q ss_pred CccceeEEEEEECcEEEEEec-CCCcccCEEEEc---CCceEEEEE-EeCCeEEEEEeCCCCCCCCCCEEEEcCCccccc
Q psy2894 24 EIYNQGKVISVFDGICQIYGL-SNAMQGEMLEFP---GNVFGLALN-LERDSIGAVILGKYEHITEGDIVKCTGRILEVP 98 (515)
Q Consensus 24 ~~~~~G~V~~I~g~iv~v~Gl-~~~~~gElv~~~---~~~~g~V~~-l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vp 98 (515)
....+|+|++|.|++++|+|. ..+.+++.|.+. .+..++|+. ++++.+.+++|+++.||++|++|++||++++||
T Consensus 10 ~~~~~G~v~~v~G~vv~v~~~~~~~~i~~~~~i~~~~~~~~~eV~~~~~~~~v~~~~~~~t~Gl~~G~~V~~tg~~~~vp 89 (482)
T 2ck3_D 10 AGATTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIP 89 (482)
T ss_dssp ---CEEEEEEEETTEEEEEESSCCCCTTCEEEESSCSSCCEEEEEEEEETTEEEEEESSCCTTCBTTCEEEECSSSCEEE
T ss_pred cCCcceEEEEEEccEEEEEecCccCcccceEEEeeCCCcEEEEEeEEecCCeEEEEeccCccCCCCCCEEEEcCCcceee
Confidence 345679999999999999984 358899999985 246788887 999999999999999999999999999999999
Q ss_pred cCccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCccHH
Q psy2894 99 IGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSI 178 (515)
Q Consensus 99 vg~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GKt~l 178 (515)
||++|||||+|++|+|||+++++...++||++..+|++++|.++++||+||||+||+|+|||||||++|||++|+|||+|
T Consensus 90 vG~~lLGRV~d~lG~PiDg~~~~~~~~~~pi~~~~P~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~Ifgg~G~GKT~L 169 (482)
T 2ck3_D 90 VGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVL 169 (482)
T ss_dssp CSGGGBTCEECTTSCBCSSSCSCCCCCEEESCCCCCCGGGCCCCCCEECCSCHHHHHHSCEETTCEEEEEECTTSSHHHH
T ss_pred ccccccCCEEcccCcCcCCcCCCCccccccccccCCchHHhcccCcCCccceEEEecccccccCCeeeeecCCCCChHHH
Confidence 99999999999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC-CCeEEEEEEecCChHHHHHHHHHHhhcCCCC------cEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHH
Q psy2894 179 AIDIIINQKN-KNVTCIYVAIGQKISSIKKTANLLEKYGAMP------YTIIVAATASDSASMQFISAYSGCTIGEYFRD 251 (515)
Q Consensus 179 ~~~~i~~~~~-~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~------~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd 251 (515)
+.+++.|++. .+.+|||++||||++||++|++++.+.++|+ ||++|++|+|+||.+|+++||+|+|+||||||
T Consensus 170 ~~~i~~~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~~~r~~~~~~a~tiAEyfrd 249 (482)
T 2ck3_D 170 IMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRD 249 (482)
T ss_dssp HHHHHHHTTTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6555555532 2345899999999999999999999999998 99999999999999999999999999999999
Q ss_pred -cCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEE
Q psy2894 252 -HGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPII 330 (515)
Q Consensus 252 -~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v 330 (515)
+|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+|||++. .+||||++|+|
T Consensus 250 ~~G~dVLll~DsitR~A~A~rEis~~lge~P~~~GYpp~l~~~l~~l~ERag~~---------------~~GSIT~i~tv 314 (482)
T 2ck3_D 250 QEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT---------------KKGSITSVQAI 314 (482)
T ss_dssp TTCSCEEEEEECTHHHHHHHHHHHGGGTCCCCGGGCCTTHHHHHHHHHTTSSCC---------------SSCCEEEEEEE
T ss_pred hcCCcEEEEeccHHHHHHHHHHhhhhcCCCCccccCchhHHHHhHHHHHhhcCC---------------CCCceeeeEEE
Confidence 99999999999999999999999999999999999999999999999999863 38999999999
Q ss_pred eecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccc-cchHHHHHHHHHHHHHHHhhHHHHHHHH-
Q psy2894 331 ETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGA-AQIKFIKKLSSNIRTDLAQYRELAAFSQ- 408 (515)
Q Consensus 331 ~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~-~~~~~~~~~a~~lr~~la~y~el~~~~~- 408 (515)
++++||++|||||++++|+||||+|||+||++||||||||+.|+||+|+. ...++|++++.++|+.|++|+|+++|++
T Consensus 315 ~v~~dD~tdPi~d~~~~i~dG~ivLsr~La~~giyPAIDvl~S~SR~~~~~i~~~~~~~~a~~lr~~la~y~el~~li~i 394 (482)
T 2ck3_D 315 YVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAI 394 (482)
T ss_dssp ECGGGCTTSHHHHHHGGGCSEEEEBCHHHHTTTCSSCBCTTSCEETTCSHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCCCccHHHHHHhcCeEEEEcHHHHhCCCCCccCcccccccCCCcccCCHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999955 6679999999999999999999999987
Q ss_pred hcc-CCCHHHHHHHHhhHHHhhccccccc----------CCCCHHHHHHHHHHHhcCcccccchhH
Q psy2894 409 FSS-DLDLVTRKQLDRGARVTELLKQKQY----------SPLPVSLIAVILFAINKGFLDDIEIKK 463 (515)
Q Consensus 409 ~g~-~ld~~~~~~l~~~~~i~~~L~Q~~~----------~~~~~~~~~~~l~~~~~G~ld~v~~~~ 463 (515)
+|+ +++++++.+++++++|++||+|+++ +.+++++++..+..+..|-+|++|.+.
T Consensus 395 ~G~~~l~~~d~~~l~~~~~i~~fL~Q~~~v~~~f~~~~g~~~~~~~t~~~l~~il~g~~d~~pe~~ 460 (482)
T 2ck3_D 395 LGMDELSEEDKLTVSRARKIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQA 460 (482)
T ss_dssp HCGGGSCHHHHHHHHHHHHHHHHTCCCCGGGHHHHSSCCCCCCHHHHHHHHHHHHTTTTTTSCGGG
T ss_pred hCCCcCCHHHHHHHHHHHHHHHHHcCCchHHHHhhcCccccCCHHHHHHHHHHHhcccccCCCHHH
Confidence 564 6999999999999999999999976 889999999999999999999998763
No 10
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=100.00 E-value=1.1e-108 Score=881.53 Aligned_cols=422 Identities=22% Similarity=0.329 Sum_probs=395.9
Q ss_pred ceeEEEEEECcEEEEEecC--CCcccCEEEEc--C------CceEEEEE-EeCCeEEEEEeCCCCCCCCCCEEEEcCCcc
Q psy2894 27 NQGKVISVFDGICQIYGLS--NAMQGEMLEFP--G------NVFGLALN-LERDSIGAVILGKYEHITEGDIVKCTGRIL 95 (515)
Q Consensus 27 ~~G~V~~I~g~iv~v~Gl~--~~~~gElv~~~--~------~~~g~V~~-l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~ 95 (515)
.+|+|++|.|++++|+|+. ...+|+.|++. + +..++|+. ++++.+.+++|+++.||++|++|++||+++
T Consensus 19 ~~G~v~~V~G~vv~v~~~~~~~~~i~~~~~i~~~~~~g~~~~~~~eV~~~~~~~~v~~~~~~~t~Gl~~G~~V~~tg~~~ 98 (498)
T 1fx0_B 19 NLGRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPL 98 (498)
T ss_dssp CCEEEEEEETTEEEEECCSSCCCCTTCEEEECCCSSSSCCCCCEEEEEECCSSSCEEEEESSCCTTCCTTCEEEECSSSC
T ss_pred CCceEEEEEccEEEEEeCCCCccccccEEEEEeCCCCCcccceEEEEEEEecCCeEEEEEecCccCCCCCCEEEecCCcc
Confidence 3699999999999999974 37889999995 2 35788887 999999999999999999999999999999
Q ss_pred ccccCccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCc
Q psy2894 96 EVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGK 175 (515)
Q Consensus 96 ~vpvg~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GK 175 (515)
+||||++|||||+|++|+|||+++++...++||++..+|++++|.++++||+||||+||+|+|||||||++|||++|+||
T Consensus 99 ~vpvG~~lLGRV~d~lG~PiD~~~~i~~~~~~pi~~~~p~~~~r~~~~e~l~TGirvID~l~pigkGqr~gIfgg~GvGK 178 (498)
T 1fx0_B 99 SVPVGGPTLGRIFNVLGEPVDNLRPVDTRTTSPIHRSAPAFTQLDTKLSIFETGIKVVNLLAPYRRGGKIGLFGGAGVGK 178 (498)
T ss_dssp EEEESSTTTTCEECTTSCBCSSSSCCCCSEEEESCCCCCCGGGCCCCCCCCCCSCTTHHHHSCCCTTCCEEEEECSSSSH
T ss_pred eEecCccceeeEEcccccCCCCcCCcCCCceeccccCCCchhhhcccccccccceeEeeeecccccCCeEEeecCCCCCc
Confidence 99999999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcC-CCeEEEEEEecCChHHHHHHHHHHhhcCCCC-------cEEEEEeCCCCCHHhhHHHHhhhhhhHH
Q psy2894 176 SSIAIDIIINQKN-KNVTCIYVAIGQKISSIKKTANLLEKYGAMP-------YTIIVAATASDSASMQFISAYSGCTIGE 247 (515)
Q Consensus 176 t~l~~~~i~~~~~-~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~-------~t~vv~~t~~~~~~~r~~a~~~a~~iAE 247 (515)
|+|+.+++.|++. .+.+|||++||||++|+++|++++.+.|+|+ ||++|++|+|+||.+|+++||+|+|+||
T Consensus 179 T~L~~~l~~~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~~~R~~~~~~altiAE 258 (498)
T 1fx0_B 179 TVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLTALTMAE 258 (498)
T ss_dssp HHHHHHHHHHTTTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCHHHHTTHHHHHHHTHH
T ss_pred hHHHHHHHHHHHhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 9996555665542 2346899999999999999999999999998 9999999999999999999999999999
Q ss_pred HHHH-cCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceee
Q psy2894 248 YFRD-HGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTA 326 (515)
Q Consensus 248 ~frd-~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~ 326 (515)
|||| +|+|||+++||+||||+|+||||+++||||+++||||++|+.|++|||||++. .+||||+
T Consensus 259 yfrd~~G~dVLl~~DsitR~A~A~rEvs~~lge~Ps~~GYpp~l~~~l~~L~ERag~~---------------~~GSIT~ 323 (498)
T 1fx0_B 259 YFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITST---------------KEGSITS 323 (498)
T ss_dssp HHTTTSCCEEEEEEECSHHHHHHHHHHHHHHTCCCCGGGCCTTHHHHHHHTSSSSSCC---------------TTCEECC
T ss_pred HHHHhcCCcEEEEeccHHHHHHHHHHHHhhcCCCCccccCCchhhhHHHHHHHhccCC---------------CCCceee
Confidence 9999 99999999999999999999999999999999999999999999999999863 3899999
Q ss_pred eeEEeecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCcccccccc-chHHHHHHHHHHHHHHHhhHHHHH
Q psy2894 327 IPIIETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAA-QIKFIKKLSSNIRTDLAQYRELAA 405 (515)
Q Consensus 327 l~~v~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~-~~~~~~~~a~~lr~~la~y~el~~ 405 (515)
+|+|++++||++||||+++++|+||||+|||+||++||||||||+.|+||+|+.. ..++|++++.++|+.|++|+|+++
T Consensus 324 i~tV~v~~dD~tdPi~d~~~~ilDG~ivLsR~La~~giyPAID~l~S~SR~~~~~i~~~~h~~~a~~lr~~la~y~el~~ 403 (498)
T 1fx0_B 324 IQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYEIAQRVKETLQRYKELQD 403 (498)
T ss_dssp EEEEECGGGCSSSHHHHHHHTTCSEEEEBCSTTTTTTCSSCBCSSSCCBTTCSTTTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEccCCCcCCcchHHHHHhhCceEEehhhHHhCCCCceeccccccccCCCcccCCHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999764 459999999999999999999999
Q ss_pred HHH-hcc-CCCHHHHHHHHhhHHHhhccccccc----------CCCCHHHHHHHHHHHhcCcccccchhH
Q psy2894 406 FSQ-FSS-DLDLVTRKQLDRGARVTELLKQKQY----------SPLPVSLIAVILFAINKGFLDDIEIKK 463 (515)
Q Consensus 406 ~~~-~g~-~ld~~~~~~l~~~~~i~~~L~Q~~~----------~~~~~~~~~~~l~~~~~G~ld~v~~~~ 463 (515)
|++ +|+ +++++++.+++++++|++||+|+++ +.+++++++..+..+..|-+|++|.+.
T Consensus 404 li~i~G~d~ls~~d~~~l~~~~~i~~fL~Q~~~v~e~ft~~~g~~v~~~~t~~~l~~il~g~~d~~pe~~ 473 (498)
T 1fx0_B 404 IIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELDSLPEQA 473 (498)
T ss_dssp HHHHHCSTTSCTTTHHHHHHHHHHHHHTCCCCSSCTTTSCSCCCCCCHHHHHHHHHTTTTTTTSSSCGGG
T ss_pred HHHHhCCCcCCHHHHHHHHHHHHHHHHHcCCchHHHHhhcCCCcccCHHHHHHHHHHHhcCcccCCCHHH
Confidence 987 575 5999999999999999999999976 889999999999999999999998753
No 11
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=100.00 E-value=6.1e-108 Score=883.53 Aligned_cols=441 Identities=23% Similarity=0.306 Sum_probs=397.0
Q ss_pred eeEEEEEECcEEEEEecCCCcccCEEEEc-CCceEEEEEEeCCeEEEEEeCCCCCCCCCCEEEEcCCccccccCccccce
Q psy2894 28 QGKVISVFDGICQIYGLSNAMQGEMLEFP-GNVFGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGR 106 (515)
Q Consensus 28 ~G~V~~I~g~iv~v~Gl~~~~~gElv~~~-~~~~g~V~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvg~~lLGr 106 (515)
.|+|++|.|++++++|+.++++||+|+|. +++.|+|+++++|.+.+++|+++.||++|++|++||++++||||++||||
T Consensus 10 ~G~V~~V~G~vv~v~g~~~~~~gE~v~v~~~~l~gEVi~~~~d~a~i~v~e~t~Gl~~G~~V~~tG~~lsV~vG~~lLGr 89 (600)
T 3vr4_A 10 IGKIIKVSGPLVMAENMSEASIQDMCLVGDLGVIGEIIEMRQDVASIQVYEETSGIGPGEPVRSTGEALSVELGPGIISQ 89 (600)
T ss_dssp CEEEEEEETTEEEEESCTTSCTTCEEEETTTTEEEEEEEEETTEEEEEESSCCTTCCTTCEEEECSSSSEEEESTTCTTC
T ss_pred ceEEEEEECcEEEEEcCCCCccCCEEEECCCcEEEEEEEEcCCcEEEEEccCCCCCCCCCEEEECCCCCEEEeCHHHHhh
Confidence 69999999999999999899999999996 45899999999999999999999999999999999999999999999999
Q ss_pred EecccCCcCCCC----C-----------CCCcc-----------------------------------------------
Q psy2894 107 VINALGDPIDGK----G-----------PIKTK----------------------------------------------- 124 (515)
Q Consensus 107 ViD~lG~pid~~----~-----------~~~~~----------------------------------------------- 124 (515)
|+|++|+|||+. + ++...
T Consensus 90 V~DglGrPlD~~~~~~g~~~~~~g~~~~~l~~~~~w~f~p~~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i 169 (600)
T 3vr4_A 90 MFDGIQRPLDTFMEVTQSNFLGRGVQLPALDHEKQWWFEATIEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGTVQKI 169 (600)
T ss_dssp EECTTCCBHHHHHHHHCSSBCCTTCCCCSSCSSCCEEEEECSCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEE
T ss_pred hhCcCCCcccccccccCccccccCCcCCCCCcccccccCcccccCCEecCCceEEEEecCCceeeeeecCCCCCceEEEe
Confidence 999999999986 4 22211
Q ss_pred --------------------------cccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCccHH
Q psy2894 125 --------------------------LTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSI 178 (515)
Q Consensus 125 --------------------------~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GKt~l 178 (515)
++||+.. ||++++|.++++||+||||+||+|+|||||||++|||++|+|||+|
T Consensus 170 ~~g~~~v~~~v~~i~~~~g~~~i~~~~~wpv~~-~~p~~~R~~~~epl~TGirvID~l~PigrGqr~~Ifgg~g~GKT~L 248 (600)
T 3vr4_A 170 ESGSFTIDDPICVIETEQGLKELTMMQKWPVRR-GRPIKQKLNPDVPMITGQRVIDTFFPVTKGGAAAVPGPFGAGKTVV 248 (600)
T ss_dssp CCEEECTTSCCEEEEETTEEEEECSCEEEETTS-CCCCSEEECCCSBCCCCCHHHHHHSCCBTTCEEEEECCTTSCHHHH
T ss_pred cCCcceeceeEEEEeccCCcccccccccccccC-CCchhhccCCCceecccchhhhccCCccCCCEEeeecCCCccHHHH
Confidence 1233333 4557799999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhh-------cCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHH
Q psy2894 179 AIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEK-------YGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRD 251 (515)
Q Consensus 179 ~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~-------~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd 251 (515)
+.+|+||++.++ |||++||||++||++|++++.+ +++|+||++|++|+|+||.+|+++||+|+|+||||||
T Consensus 249 -~~~ia~~~~~~v-~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~m~rtvvV~~tsd~p~~~R~~~~~~altiAEyfrd 326 (600)
T 3vr4_A 249 -QHQIAKWSDVDL-VVYVGCGERGNEMTDVVNEFPELIDPNTGESLMERTVLIANTSNMPVAAREASIYTGITIAEYFRD 326 (600)
T ss_dssp -HHHHHHHSSCSE-EEEEEEEECHHHHHHHHHHTTTCBCTTTCSBGGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHhccCCCE-EEEEEecccHHHHHHHHHHHHhhcccccccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 478999998885 9999999999999999999875 5789999999999999999999999999999999999
Q ss_pred cCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEe
Q psy2894 252 HGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIE 331 (515)
Q Consensus 252 ~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~ 331 (515)
+|+|||+++||+||||+|+||||+++||||+++||||++|+.+++||||||++.+. + + .+++||||++|+|+
T Consensus 327 ~G~dVLl~~Ds~tR~A~A~rEiS~~lge~P~~~GYp~~l~s~L~~l~ERAg~~~~~-----~-~--~~~~GSIT~i~~v~ 398 (600)
T 3vr4_A 327 MGYDVAIMADSTSRWAEALREMSGRLEEMPGDEGYPAYLGSRLAEYYERSGRVIAL-----G-S--DQREGSITAISAVS 398 (600)
T ss_dssp TTCEEEEEEECHHHHHHHHHHHHHHTTCCBCGGGCBTTHHHHHHHHHTTSEEEECS-----S-T--TCCEEEEEEEEEEC
T ss_pred cCCCEEEEecchHHHHHHHHHHHhccCCCCccccCCchhhhHHHHHHHhhcccccc-----C-C--CCCCcceEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999997421 0 0 12389999999999
Q ss_pred ecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCcccccccc-------chHHHHHHHHHHHHHHHhhHHHH
Q psy2894 332 TQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAA-------QIKFIKKLSSNIRTDLAQYRELA 404 (515)
Q Consensus 332 ~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~-------~~~~~~~~a~~lr~~la~y~el~ 404 (515)
+++||++||||+++++|+||||+|||+||++||||||||+.|+||++..+ ..++|.+++.+++.+|++|+|++
T Consensus 399 ~~gdD~tdPi~~~t~~i~dg~ivLsr~La~~giyPAId~l~S~SR~~~~l~~~~~~~~~~~h~~~a~~~~~~la~~~el~ 478 (600)
T 3vr4_A 399 PSGGDISEPVTQNTLRVVKVFWGLDSSLAQKRHFPSINWIQSYSLYSTEVGRYMDQILQQDWSDMVTEGMRILQEEEQLN 478 (600)
T ss_dssp CSSSCTTSHHHHHHHTTCCEECCBCHHHHTTTCSSCBCTTTCEETTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcchhhhhhhccEEEEEhhhHHhCCCCCccCcccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999854 35789999999999999999999
Q ss_pred HHHH-hcc-CCCHHHHHHHHhhHHHh-hcccccccCC----CCHHHHHHHHHHH------hcCcc-cccchhHHHHHHHH
Q psy2894 405 AFSQ-FSS-DLDLVTRKQLDRGARVT-ELLKQKQYSP----LPVSLIAVILFAI------NKGFL-DDIEIKKILNFESS 470 (515)
Q Consensus 405 ~~~~-~g~-~ld~~~~~~l~~~~~i~-~~L~Q~~~~~----~~~~~~~~~l~~~------~~G~l-d~v~~~~v~~f~~~ 470 (515)
++++ +|. +|+++++..++++++++ .||+|++|++ +|+++|+..|..+ ...++ .++++++++++...
T Consensus 479 ~ii~i~G~d~Ls~~dk~~l~~a~~i~e~fL~Q~~f~~~d~~~~~~kq~~~l~~i~~~~~~~~~~~~~~~~~~~i~~~~~~ 558 (600)
T 3vr4_A 479 EIVRLVGIDSLSDNDRLTLEVAKSIREDYLQQNAFDDVDTFTSREKQFNMLKVILTFGKEARKALSLGAYFNEIMEGTVA 558 (600)
T ss_dssp HHHHHTCGGGSCHHHHHHHHHHHHHHHHTTCCCTTSTTTTCCCHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHCHH
T ss_pred HHHhccCCccCCHHHHHHHHHHHHHHHHhCCCCCcCCccccCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHH
Confidence 9999 585 59999999999999998 5999999876 7999999888554 23344 36789999887666
Q ss_pred HHHHHHhhc
Q psy2894 471 LYKFMKTCQ 479 (515)
Q Consensus 471 l~~~l~~~~ 479 (515)
++..+.+.+
T Consensus 559 ~~~~~~~~k 567 (600)
T 3vr4_A 559 VRERISRSK 567 (600)
T ss_dssp HHHHHHTGG
T ss_pred HHHHHHHhc
Confidence 777766654
No 12
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=100.00 E-value=2.6e-109 Score=891.15 Aligned_cols=440 Identities=23% Similarity=0.285 Sum_probs=323.8
Q ss_pred ceeEEEEEECcEEEEEecCCCcccCEEEEc-CCceEEEEEEeCCeEEEEEeCCCCCCCCCCEEEEcCCccccccCccccc
Q psy2894 27 NQGKVISVFDGICQIYGLSNAMQGEMLEFP-GNVFGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCG 105 (515)
Q Consensus 27 ~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~-~~~~g~V~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvg~~lLG 105 (515)
..|+|++|.|++++++|++++++||+|+|. +++.|+|+++++|.+.+++|+++.||++|++|++||++++||||++|||
T Consensus 3 ~~G~V~~V~G~iv~~~g~~~~~~gElv~v~~~~l~geVi~l~~d~~~i~v~e~t~Gi~~G~~V~~tg~~lsV~vG~gLLG 82 (588)
T 3mfy_A 3 AKGRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEPVVGTGASLSVELGPRLLT 82 (588)
T ss_dssp ----------------------------------------------------------CCCCCSSSSSCCEEEESTTCTT
T ss_pred ceeEEEEEECCEEEEEcCCCCccCCEEEEcCCceEEEEEEecCCeEEEEEccCCCCCCCCCEEEEcCCCCEEEeCHHHHh
Confidence 569999999999999999999999999996 4589999999999999999999999999999999999999999999999
Q ss_pred eEecccCCcCCCCCCC--------------Cc------------------------------------------------
Q psy2894 106 RVINALGDPIDGKGPI--------------KT------------------------------------------------ 123 (515)
Q Consensus 106 rViD~lG~pid~~~~~--------------~~------------------------------------------------ 123 (515)
||+|++|+|||+.+++ ..
T Consensus 83 rV~DglgrPLd~~~~~~g~~~~~g~~~~~l~~~~~w~f~p~~~~gd~v~~G~i~g~v~e~~~~~~~imvpp~~~g~v~~i 162 (588)
T 3mfy_A 83 SIYDGIQRPLEVIREKTGDFIARGVTAPALPRDKKWHFIPKAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEI 162 (588)
T ss_dssp CEEETTCCSSSSCCCCCSSSCCCCCCCCSSCSSCCEEEEECCCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEE
T ss_pred hccCCCCCcccCcccccccccccccccCccccccccccccccccCcccccCceEEEEecccceeeeeecCCCCCceEEEe
Confidence 9999999999997532 10
Q ss_pred ---------------------------ccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCcc
Q psy2894 124 ---------------------------KLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKS 176 (515)
Q Consensus 124 ---------------------------~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GKt 176 (515)
.++||+.. ++++++|.++++||+||||+||+|+|||||||++|||++|+|||
T Consensus 163 ~~~g~~~v~~~i~~i~~~~g~~~~i~~~~~wpv~~-~~p~~~R~~~~epl~TGirvID~l~PigkGqr~~I~g~~g~GKT 241 (588)
T 3mfy_A 163 AEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRV-KRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPAGSGKT 241 (588)
T ss_dssp CCSEEECTTSEEEEEECTTCCEEEEESCEEEETTS-CCCCSEEECSCSEECCSCHHHHHHSCEETTCEEEECSCCSHHHH
T ss_pred ccCCcccccceEEEEecCCCccccccccccccccC-CCchhhhccCCcccccCcchhhccCCcccCCeEEeecCCCCCHH
Confidence 01233333 34468899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhh-------cCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHH
Q psy2894 177 SIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEK-------YGAMPYTIIVAATASDSASMQFISAYSGCTIGEYF 249 (515)
Q Consensus 177 ~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~-------~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~f 249 (515)
+| +.+|+++++.+ +|||++||||++||++|++++.+ +++|+||++|++|+|+||.+|+++||+|+|+||||
T Consensus 242 ~L-~~~ia~~~~~~-~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~rtvvV~~tsd~p~~~r~~~~~~a~tiAEyf 319 (588)
T 3mfy_A 242 VT-QHQLAKWSDAQ-VVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYF 319 (588)
T ss_dssp HH-HHHHHHHSSCS-EEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGGEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHhccCCC-EEEEEEecccHHHHHHHHHHHHHhcccccccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 99 57899998888 59999999999999999999876 67899999999999999999999999999999999
Q ss_pred HHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeE
Q psy2894 250 RDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPI 329 (515)
Q Consensus 250 rd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~ 329 (515)
||+|+|||+++||+||||+|+||||+++||||+++||||++|+.+++||||||++.+. ++ .+++||||++|+
T Consensus 320 rd~G~dVLl~~DsltR~A~A~rEis~~lge~P~~~GYp~~l~s~L~~l~ERAg~~~~~------~~--~~~~GSIT~i~~ 391 (588)
T 3mfy_A 320 RDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTL------GS--DYRVGSVSVIGA 391 (588)
T ss_dssp HHTTCEEEEEEECTTTCCCCC----------------CCHHHHHHHHHHTTCEEEECS------SS--SCCEEEEEEEEE
T ss_pred HHcCCCEEEeecchHHHHHHHHHHHHhccCCCccccCCchhhhhhhHHHhcccccccc------CC--CCCCcceEEEEE
Confidence 9999999999999999999999999999999999999999999999999999997421 00 113899999999
Q ss_pred EeecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCcccccccc-------chHHHHHHHHHHHHHHHhhHH
Q psy2894 330 IETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAA-------QIKFIKKLSSNIRTDLAQYRE 402 (515)
Q Consensus 330 v~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~-------~~~~~~~~a~~lr~~la~y~e 402 (515)
|++++||++||||++++||+||||+|||+||++||||||||+.|+||+++.+ ..++|++++.+++++|++|+|
T Consensus 392 v~~~gdD~sdpi~~~~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~i~~~~~~~~~~~h~~~a~~~~~~La~~~e 471 (588)
T 3mfy_A 392 VSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESE 471 (588)
T ss_dssp CCCTTSCSSCSHHHHHHHHCSEECCBCHHHHHTTCSSCBCTTTCEETTHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCCCcchHHHHHhccCeeecCHHHHhCCCCCCcCcccchhhhcccccchhhccCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999874 358899999999999999999
Q ss_pred HHHHHH-hcc-CCCHHHHHHHHhhHHHh-hcccccccCCC----CHHHHHHHHHHH------hcCcc-cccchhHHHHHH
Q psy2894 403 LAAFSQ-FSS-DLDLVTRKQLDRGARVT-ELLKQKQYSPL----PVSLIAVILFAI------NKGFL-DDIEIKKILNFE 468 (515)
Q Consensus 403 l~~~~~-~g~-~ld~~~~~~l~~~~~i~-~~L~Q~~~~~~----~~~~~~~~l~~~------~~G~l-d~v~~~~v~~f~ 468 (515)
++++++ +|. +|+++++..++++++++ .||+|++|+++ |+++|+..|..+ ...++ .+++++++++
T Consensus 472 l~~ii~i~G~d~Ls~~dk~~l~~ar~i~e~fL~Q~~f~~~d~~~~~~k~~~~l~~i~~~~~~~~~~~~~~~~~~~i~~-- 549 (588)
T 3mfy_A 472 LQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFYDKTMEAINRGVPLEEIAK-- 549 (588)
T ss_dssp HHHHHHHHCSTTCCHHHHHHHHHHHHHHHHTTCCCTTSTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHT--
T ss_pred HHHHHHhcCCccCCHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhc--
Confidence 999999 685 59999999999999997 59999998887 999999888554 22333 3578888876
Q ss_pred HHHHHHHHhhc
Q psy2894 469 SSLYKFMKTCQ 479 (515)
Q Consensus 469 ~~l~~~l~~~~ 479 (515)
..++..+.+.+
T Consensus 550 ~~~~~~~~~~k 560 (588)
T 3mfy_A 550 LPVREEIGRMK 560 (588)
T ss_dssp CHHHHHHTTGG
T ss_pred CcHHHHHHHhc
Confidence 24666554443
No 13
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=100.00 E-value=2.2e-107 Score=876.11 Aligned_cols=435 Identities=23% Similarity=0.312 Sum_probs=389.6
Q ss_pred eeEEEEEECcEEEEEecCCCcccCEEEEc-CCceEEEEEEeCCeEEEEEeCCCCCCCCCCEEEEcCCccccccCccccce
Q psy2894 28 QGKVISVFDGICQIYGLSNAMQGEMLEFP-GNVFGLALNLERDSIGAVILGKYEHITEGDIVKCTGRILEVPIGPELCGR 106 (515)
Q Consensus 28 ~G~V~~I~g~iv~v~Gl~~~~~gElv~~~-~~~~g~V~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvg~~lLGr 106 (515)
.|+|++|.|++++|+|+.++++||+|++. +++.|+|+++++|.+.+++|+++.||++|++|++||++++||||++||||
T Consensus 3 ~G~V~~V~G~vv~v~g~~~~~~gE~v~v~~~~l~gEVi~~~~d~~~i~v~e~t~Gl~~G~~V~~tg~~l~V~vG~~lLGr 82 (578)
T 3gqb_A 3 QGVIQKIAGPAVIAKGMLGARMYDISKVGEEGLVGEIIRLDGDTAFVQVYEDTSGLKVGEPVVSTGLPLAVELGPGMLNG 82 (578)
T ss_dssp EEEEEEEETTEEEEESCTTCCTTEEEEETTTTEEEEEEEEETTEEEEEESSCCTTCCTTCEEEEEEEESEEEESTTCTTC
T ss_pred eeEEEEEECCEEEEEcCCCCccCCEEEECCCcEEEEEEEEcCCcEEEEEcCCCCCCCCCCEEEECCCCCEEEeCHHHhhh
Confidence 59999999999999999899999999996 45899999999999999999999999999999999999999999999999
Q ss_pred EecccCCcCCCC----CC----------CCcc------------------------------------------------
Q psy2894 107 VINALGDPIDGK----GP----------IKTK------------------------------------------------ 124 (515)
Q Consensus 107 ViD~lG~pid~~----~~----------~~~~------------------------------------------------ 124 (515)
|+|++|+|||+. ++ +...
T Consensus 83 V~DglG~PlD~~~~~~g~~~~~g~~~~~l~~~~~w~f~p~~~~g~~v~~G~i~g~v~e~~~ih~i~~pp~~~g~v~~i~~ 162 (578)
T 3gqb_A 83 IYDGIQRPLERIREKTGIYITRGVVVHALDREKKWAWTPMVKPGDEVRGGMVLGTVPEFGFTHKILVPPDVRGRVKEVKP 162 (578)
T ss_dssp EECTTSCBHHHHHHHHCSBCCTTCCCCSSCSSSCEEEEECCCTTCEECTTCEEEEEEETTEEEEEECCTTCCEEEEEECC
T ss_pred hhCcCCCcccccccccCccccccccCCCcCcccccccccccccCccccccceeeeecccccceecccCCCcCceeEEecc
Confidence 999999999987 32 2111
Q ss_pred ----------------------cccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCCCccHHHHHH
Q psy2894 125 ----------------------LTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDI 182 (515)
Q Consensus 125 ----------------------~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~GKt~l~~~~ 182 (515)
++||+..+ +++++|.++++||+||||+||+|+|||||||++|||++|+|||+|+ .+
T Consensus 163 ~G~~~v~~~i~~~~~g~~i~~~~~wPv~~~-~p~~~R~~~~epl~TGirvID~l~PigrGqr~~Ifg~~g~GKT~l~-~~ 240 (578)
T 3gqb_A 163 AGEYTVEEPVVVLEDGTELKMYHTWPVRRA-RPVQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGSGKSVTQ-QS 240 (578)
T ss_dssp SEEECTTSCSEEETTCCEECSCEEEETTSC-CCCSEEECSCSEECCSCHHHHTTSCEETTCEEEECCCTTSCHHHHH-HH
T ss_pred CCcccccceeEEeecCccccccccccccCC-CChHHhccCCCcccccchhhhhcccccCCCEEeeeCCCCccHHHHH-HH
Confidence 12333332 4577999999999999999999999999999999999999999994 78
Q ss_pred HHHhcCCCeEEEEEEecCChHHHHHHHHHHhh-------cCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCc
Q psy2894 183 IINQKNKNVTCIYVAIGQKISSIKKTANLLEK-------YGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKD 255 (515)
Q Consensus 183 i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~-------~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~ 255 (515)
|+||++.++ |||++||||++||++|++++.+ .++|+||++|++|+|+||.+|+++||+|+|+||||||+|+|
T Consensus 241 ia~~~~~~v-~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~~~rtvvv~~tsd~p~~~R~~~~~~altiAEyfrd~G~d 319 (578)
T 3gqb_A 241 LAKWSNADV-VVYVGSGERGNEMTDVLVEFPELTDPKTGGPLMHRTVLIANTSNMPVAAREASIYVGVTIAEYFRDQGFS 319 (578)
T ss_dssp HHHHSSCSE-EEEEEEEECHHHHHHHHTTGGGCBCTTTSSBSGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHhccCCCE-EEEEEecccHHHHHHHHHHHHhhcccccccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999998885 9999999999999999999876 57899999999999999999999999999999999999999
Q ss_pred EEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEeecCC
Q psy2894 256 ALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQAG 335 (515)
Q Consensus 256 Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~~~~ 335 (515)
||+++||+||||+|+||||+++||||+++||||++|+.+++||||||++.+. .+++||||++|+|++++|
T Consensus 320 VLl~~Ds~tR~A~A~rEis~~lge~P~~~GYp~~l~s~l~~l~ERAg~~~~~----------~~~~GSIT~i~~v~~~gd 389 (578)
T 3gqb_A 320 VALMADSTSRWAEALREISSRLEEMPAEEGYPPYLAARLAAFYERAGKVITL----------GGEEGAVTIVGAVSPPGG 389 (578)
T ss_dssp EEECCSCHHHHHHHHHHHHHHTTCCCCSSSSCTTHHHHHHHHHTTCEEEECT----------TSCEEEEEEEEECCCTTT
T ss_pred EEEEecChHHHHHHHHHHHHhccCCCccccCCchhhhHHHHHHHhhcCcccC----------CCCCcceEEEEEEEcCCC
Confidence 9999999999999999999999999999999999999999999999998531 123899999999999999
Q ss_pred CCCCcccccccccCCeEEEecchhhcCCCcCccccCCCcccccccc-------chHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy2894 336 DISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAA-------QIKFIKKLSSNIRTDLAQYRELAAFSQ 408 (515)
Q Consensus 336 D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~-------~~~~~~~~a~~lr~~la~y~el~~~~~ 408 (515)
|++||||+++++|+||||+|||+||++||||||||+.|+||+++.+ ..++|.+++.++++.|++|+|++++++
T Consensus 390 D~tdPi~~~t~~i~dg~ivLsr~La~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~h~~~a~~~~~~l~~~~el~~ii~ 469 (578)
T 3gqb_A 390 DMSEPVTQSTLRIVGAFWRLDASLAFRRHFPAINWNGSYSLFTSALDPWYRENVAEDYPELRDAISELLQREAGLQEIVQ 469 (578)
T ss_dssp CTTSHHHHHHHTTCSEECCBCHHHHHHTCSSCBCTTTCEESSHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHTTTTTTT
T ss_pred CCCCcchHHHhhhcCceEEECHHHHhCCCCCCcCcccchhhccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999753 458899999999999999999999999
Q ss_pred -hcc-CCCHHHHHHHHhhHHHh-hcccccccCC----CCHHHHHHHHHHH------hcCcc-cccchhHHHHHHHHHHHH
Q psy2894 409 -FSS-DLDLVTRKQLDRGARVT-ELLKQKQYSP----LPVSLIAVILFAI------NKGFL-DDIEIKKILNFESSLYKF 474 (515)
Q Consensus 409 -~g~-~ld~~~~~~l~~~~~i~-~~L~Q~~~~~----~~~~~~~~~l~~~------~~G~l-d~v~~~~v~~f~~~l~~~ 474 (515)
+|. +|+++++..++++++++ .||+|++|++ +|+++|+..|..+ ...++ .+++++++++ ..++..
T Consensus 470 i~G~d~Ls~~dk~~l~~a~~i~~~fL~Q~~f~~~d~~~~~~kq~~~l~~i~~~~~~~~~~~~~~~~~~~i~~--~~~~~~ 547 (578)
T 3gqb_A 470 LVGPDALQDAERLVIEVGRIIREDFLQQNAYHEVDAYSSMKKAYGIMKMILAFYKEAEAAIKRGVSIDEILQ--LPVLER 547 (578)
T ss_dssp TTTGGGCCHHHHHHHHHHHHHHHHHTCCCSSSTTTTCCCHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHTT--CTTHHH
T ss_pred hcCCccCCHHHHHHHHHHHHHHHHhCCCCCCCCceecCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhc--CcHHHH
Confidence 675 59999999999999998 5999999876 7999999888554 22233 3467777665 234444
Q ss_pred HHh
Q psy2894 475 MKT 477 (515)
Q Consensus 475 l~~ 477 (515)
+.+
T Consensus 548 ~~~ 550 (578)
T 3gqb_A 548 IGR 550 (578)
T ss_dssp HHT
T ss_pred HHH
Confidence 433
No 14
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=100.00 E-value=2.4e-102 Score=831.45 Aligned_cols=421 Identities=25% Similarity=0.345 Sum_probs=394.7
Q ss_pred eeEEEEEECcEEEEEecC--CCcccCEEEEcC----------CceEEEEE-EeCCeEEEEEeCCCCCCCCCCEEEEcCCc
Q psy2894 28 QGKVISVFDGICQIYGLS--NAMQGEMLEFPG----------NVFGLALN-LERDSIGAVILGKYEHITEGDIVKCTGRI 94 (515)
Q Consensus 28 ~G~V~~I~g~iv~v~Gl~--~~~~gElv~~~~----------~~~g~V~~-l~~~~v~~~~~~~~~gi~~G~~V~~tg~~ 94 (515)
+|+|++|.|++++|+|+. .+.+||+|++.. ...++|+. ++++.+.+++|+++.||++|++|++||++
T Consensus 3 ~G~v~~v~G~vv~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~ev~~~~~~~~v~~~~~~~t~gl~~G~~V~~tg~~ 82 (473)
T 1sky_E 3 RGRVIQVMGPVVDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVRTIAMASTDGLIRGMEVIDTGAP 82 (473)
T ss_dssp EEEEEEEETTEEEEEESTTCCCCTTEEEEEEECCSSTTCCCEEEEEEEEEEEETTEEEEEESSCCTTCCTTCEEEEEEEE
T ss_pred ceEEEEEECcEEEEEecCCcccccCCEEEEEecCCCCCccccceEEEEeEEecCCcEEEEEecCccCCCCCCEEEEcCCc
Confidence 699999999999999973 479999999952 24678886 99999999999999999999999999999
Q ss_pred cccccCccccceEecccCCcCCCCCCCCcc-cccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCCC
Q psy2894 95 LEVPIGPELCGRVINALGDPIDGKGPIKTK-LTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQT 173 (515)
Q Consensus 95 ~~vpvg~~lLGrViD~lG~pid~~~~~~~~-~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g~ 173 (515)
++||||++|||||+|++|+|||+++++... ++||++..+|++++|.++++||+||||+||.|.|++||||++|||++|+
T Consensus 83 ~~vpvg~~llGrv~d~lG~piD~~g~i~~~~~~~pi~~~~p~~~~r~~~~e~l~TGir~ID~L~pi~kGq~~~i~G~sGv 162 (473)
T 1sky_E 83 ISVPVGQVTLGRVFNVLGEPIDLEGDIPADARRDPIHRPAPKFEELATEVEILETGIKVVDLLAPYIKGGKIGLFGGAGV 162 (473)
T ss_dssp CEEECSGGGTTCEECTTSCBCSSSCCCCTTSCEEESCCCCCCGGGBCCSCCEECCSCHHHHHHSCEETTCEEEEECCSSS
T ss_pred ceeeccccceeeEEeecCCccCcccccCCCceeecccccCcchhhhcccCccccccchHHHHHhhhccCCEEEEECCCCC
Confidence 999999999999999999999999998876 7899999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHhc-CCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHH-
Q psy2894 174 GKSSIAIDIIINQK-NKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRD- 251 (515)
Q Consensus 174 GKt~l~~~~i~~~~-~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd- 251 (515)
|||+|+..++.+++ +...+|||++||||.+|+++|++++.+.|+|+||++|++++++||+.|++++++|+++||||||
T Consensus 163 GKTtL~~~l~~~~~~~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~~ltiAEyFrd~ 242 (473)
T 1sky_E 163 GKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALTGLTMAEYFRDE 242 (473)
T ss_dssp CHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHhhhhhccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999644444443 2345689999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEe
Q psy2894 252 HGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIE 331 (515)
Q Consensus 252 ~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~ 331 (515)
+|+|||+++||+||||+||||+|+++||||+++||||++|+.|++|+|||++. .+||||++|+|+
T Consensus 243 ~G~~VLl~~D~itR~a~A~reis~~~ge~P~~~GYp~~~~~~l~~l~ERa~~~---------------~~GSIT~i~tv~ 307 (473)
T 1sky_E 243 QGQDGLLFIDNIFRFTQAGSEVSALLGRMPSAIGYQPTLATEMGQLQERITST---------------AKGSITSIQAIY 307 (473)
T ss_dssp SCCEEEEEEECTHHHHHHHHHHHHHHTCCCCGGGCCTTHHHHHHHHHTTSSCB---------------SSCEEEEEEECC
T ss_pred cCCcEEEEeccHHHHHHHHHHHHhhcCCCCccccCCchhhhHHHHHHHHhcCC---------------CCCceEEEEEEE
Confidence 89999999999999999999999999999999999999999999999999863 389999999999
Q ss_pred ecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCcccccccc-chHHHHHHHHHHHHHHHhhHHHHHHHHh-
Q psy2894 332 TQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAA-QIKFIKKLSSNIRTDLAQYRELAAFSQF- 409 (515)
Q Consensus 332 ~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~-~~~~~~~~a~~lr~~la~y~el~~~~~~- 409 (515)
+++||++|||||++++|+||||+|||+||++||||||||+.|+||+|+.. ..++|++++.++|+.|++|+|+++++++
T Consensus 308 ~~~dD~~dpi~~~~~~i~dg~ivLsr~La~~g~yPAId~l~S~SR~~~~~~~~~~~~~~a~~lr~~la~y~e~~~li~i~ 387 (473)
T 1sky_E 308 VPADDYTDPAPATTFSHLDATTNLERKLAEMGIYPAVDPLVSTSRALAPEIVGEEHYQVARKVQQTLERYKELQDIIAIL 387 (473)
T ss_dssp CSTTCSSSHHHHHHHTTCSEEEEBCTTHHHHTCSSCBCTTTCCBTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCCCcchHHHHhhcCceEEecHHHHhCCCCCccccccccccccchhcCCHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999775 4599999999999999999999998775
Q ss_pred c-cCCCHHHHHHHHhhHHHhhccccccc----------CCCCHHHHHHHHHHHhcCcccccchhH
Q psy2894 410 S-SDLDLVTRKQLDRGARVTELLKQKQY----------SPLPVSLIAVILFAINKGFLDDIEIKK 463 (515)
Q Consensus 410 g-~~ld~~~~~~l~~~~~i~~~L~Q~~~----------~~~~~~~~~~~l~~~~~G~ld~v~~~~ 463 (515)
| ++++++++.+++++++|++||+|+++ +.+++++++..++.+..|-+|.+|.+.
T Consensus 388 g~~~ls~~d~~~l~~~~~i~~fL~Q~~~~~~~~~~~~~~~~~~~~t~~~l~~i~~~~~~~~~~~~ 452 (473)
T 1sky_E 388 GMDELSDEDKLVVHRARRIQFFLSQNFHVAEQFTGQPGSYVPVKETVRGFKEILEGKYDHLPEDR 452 (473)
T ss_dssp CSTTCTTHHHHHHHHHHHHHHHTCBCCTTTHHHHSCCCCCCCHHHHHHHHHHHHTTTTTTSCGGG
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCchHhhhhhccCCccCCHHHHHHHHHHHhcccccCCCHHH
Confidence 6 48999999999999999999999976 678999999999999999999998764
No 15
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=100.00 E-value=1.5e-77 Score=622.93 Aligned_cols=303 Identities=18% Similarity=0.192 Sum_probs=273.7
Q ss_pred CCCCCCCEEEEcCCccccccCccccceEecccCCcCCCCCCCCcccccccccCCC-CccccCCCc-cccccccccccccc
Q psy2894 80 EHITEGDIVKCTGRILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAP-GVISRQSVS-EPLQTGIKAIDSIV 157 (515)
Q Consensus 80 ~gi~~G~~V~~tg~~~~vpvg~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p-~~~~R~~~~-epl~TGik~ID~l~ 157 (515)
-+|+.||.|...-++.+-.--..-|+||-+..|.+.+. ...+.+++..+| +|++|.++. +|++||+|+||+|+
T Consensus 96 ~~lr~gd~v~g~~r~~~~~e~~~~l~~v~~vng~~p~~-----~~~r~~fe~l~Pi~P~~R~~le~e~~~tGiraID~l~ 170 (427)
T 3l0o_A 96 FNLNTGDIISGVIRKPKEGEKYFAMIKIEAINYRPVEA-----VNDRVNFDNLTPDYPRERFILETDPKIYSTRLIDLFA 170 (427)
T ss_dssp TTCCTTCEEEEEEECCCSSSCSEEEEEEEEETTEEC---------CCCCGGGSCEECCCSBCCCCCSTTCHHHHHHHHHS
T ss_pred cCCCCCCEEEEEEeCCCCCcccccceEEEecCCCChHH-----hccccccccCCCCCchhhccccccchhccchhhhhcc
Confidence 47899999987765554322223567887777765543 344556666666 799999999 99999999999999
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHHh---cCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHh
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIINQ---KNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASM 234 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~~---~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~ 234 (515)
|||||||++||||+|+|||+|+ .+|+|+ ++.++.|||++||||++||++|++++. | +||++|+|+||.+
T Consensus 171 PigrGQR~lIfg~~g~GKT~Ll-~~Ia~~i~~~~~dv~~V~~lIGER~~EV~d~~~~~~--G-----~VV~atadep~~~ 242 (427)
T 3l0o_A 171 PIGKGQRGMIVAPPKAGKTTIL-KEIANGIAENHPDTIRIILLIDERPEEVTDIRESTN--A-----IVIAAPFDMPPDK 242 (427)
T ss_dssp CCBTTCEEEEEECTTCCHHHHH-HHHHHHHHHHCTTSEEEEEECSCCHHHHSSSSSSCC--S-----EEEECCTTSCHHH
T ss_pred cccCCceEEEecCCCCChhHHH-HHHHHHHhhcCCCeEEEEEEeccCcchHHHHHHHhC--C-----eEEEECCCCCHHH
Confidence 9999999999999999999995 888875 578999999999999999999999886 2 8999999999999
Q ss_pred hHHHHhhhhhhHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccC
Q psy2894 235 QFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTN 314 (515)
Q Consensus 235 r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~ 314 (515)
|+++||+|+++||||||+|+||||++||+||||+||||+|+++||||+ .||||++|+.+++++|||+++
T Consensus 243 r~~~a~~altiAEyfrd~G~dVLil~DslTR~A~A~rEvs~~~Ge~~s-~Gypp~~~~~~~~~~erA~~i---------- 311 (427)
T 3l0o_A 243 QVKVAELTLEMAKRLVEFNYDVVILLDSLTRLARVYNIVVPPSGKLLT-GGVDPAALYKPKRFFGAARNT---------- 311 (427)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEECHHHHHHHHHHHSCCCSCCCS-SSCCSSCSHHHHHHHHTCEEE----------
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEecccchHHHHHHHHHHHhcCCCCC-CCcCchhhcchHHHHHhhccc----------
Confidence 999999999999999999999999999999999999999999999999 599999999999999999997
Q ss_pred CcccCCCCceeeeeEEeec-CCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHH
Q psy2894 315 GKVTGKTGSLTAIPIIETQ-AGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNI 393 (515)
Q Consensus 315 ~~~~g~~GSiT~l~~v~~~-~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~l 393 (515)
.+ +||||++|||+++ +||++||||+++++|+||||+|||+||++||||||||+.|+||+++.++.++|++++.++
T Consensus 312 ---e~-~GSIT~i~tvlvetgdd~~dpI~d~~~~i~dg~IvLsR~La~~giyPAIDvl~S~SR~~~~l~~~~h~~~a~~l 387 (427)
T 3l0o_A 312 ---RE-GGSLTIIATALVETGSKMDEVIFEEFKGTGNMELVLSRQLANKRIFPAINLLLSGTRREELLLDEETLKKVWLL 387 (427)
T ss_dssp ---SS-SCEEEEEEEEECSSSCSHHHHHHHHTTTCCSEEEEBCHHHHTTTCSSCBCSTTCEETTGGGTSCHHHHHHHHHH
T ss_pred ---CC-CcceeEEEEEEecCCCCcCCcchHHhcccCCceEEEeHHHHhCCCCCccCccccccccccccCCHHHHHHHHHH
Confidence 44 8999999999999 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHhc
Q psy2894 394 RTDLAQYRELAAFSQFS 410 (515)
Q Consensus 394 r~~la~y~el~~~~~~g 410 (515)
|+.|++|++++++.++.
T Consensus 388 r~~la~y~e~e~l~~ll 404 (427)
T 3l0o_A 388 RRMLSAMTEEEGLTLIL 404 (427)
T ss_dssp HHHHTTSCHHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHH
Confidence 99999999999998875
No 16
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=100.00 E-value=4.8e-75 Score=620.44 Aligned_cols=413 Identities=23% Similarity=0.307 Sum_probs=386.3
Q ss_pred CccceeEEEEEECcEEEEEecCCCcccCEEEEcC-------CceEEEEEEeCCeEEEEEeCCCCCCCCCCEEEEcCC---
Q psy2894 24 EIYNQGKVISVFDGICQIYGLSNAMQGEMLEFPG-------NVFGLALNLERDSIGAVILGKYEHITEGDIVKCTGR--- 93 (515)
Q Consensus 24 ~~~~~G~V~~I~g~iv~v~Gl~~~~~gElv~~~~-------~~~g~V~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~--- 93 (515)
..+.+|+|++|.|++++|+|+ ++++||+|+|.+ ...|+|++++++.+.+++|+++.||++|++|.+||+
T Consensus 6 ~~~~~g~v~~v~g~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~~~gl~~g~~v~~~~~~~~ 84 (438)
T 2dpy_A 6 AVRRYGRLTRATGLVLEATGL-QLPLGATCIIERQDGPETKEVESEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGD 84 (438)
T ss_dssp -CCCCEEEEECSSSSEEEESC-CCCSSCEEEEEECSTTSCEEEEEEEEECCTTCEEEEESSCCTTCCTTEEEEEC-----
T ss_pred ccceeeEEEEEECcEEEEEeC-CCCCCCEEEEecCCCCccccEEEEEEEEcCCEEEEEEccCCCCCCCCCEEEECCCccc
Confidence 456789999999999999997 899999999963 267999999999999999999999999999999999
Q ss_pred ----ccccccCccccceEecccCCcCCCCCCCCcccccccccCCCCccccCCCccccccccccccccccccCCcceeeec
Q psy2894 94 ----ILEVPIGPELCGRVINALGDPIDGKGPIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIG 169 (515)
Q Consensus 94 ----~~~vpvg~~lLGrViD~lG~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g 169 (515)
++++|+|+++||||+|++|+|+|+.+++....++|++..+|++++|..++.++.||+++||.++||++||+++|+|
T Consensus 85 ~~~~~~~v~~g~~~lgrv~~~lg~p~d~~~~~~~~~~~~i~~~~~~~l~~~~v~~~~~tg~~vld~vl~i~~Gq~~~IvG 164 (438)
T 2dpy_A 85 GLQSGKQLPLGPALLGRVLDGGGKPLDGLPAPDTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFA 164 (438)
T ss_dssp -----CEEECSGGGTTEEECTTCCBSSSSCCCCCSCEEESCCCCCCTTTSCCCCSBCCCSCHHHHHHSCCBTTCEEEEEE
T ss_pred cccccEEEEcchhhhhhhhhccCCccCCCCCccccccccccCCCCCceEEeccceecCCCceEEeeeEEecCCCEEEEEC
Confidence 9999999999999999999999999988777788999999999999999999999999999999999999999999
Q ss_pred CCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHH
Q psy2894 170 DRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYF 249 (515)
Q Consensus 170 ~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~f 249 (515)
++|+||||| +.+|+++...+. .+|.++|+|++|+.++.+.+.+.+.+++++.+++++++++..++.+++.++++||||
T Consensus 165 ~sGsGKSTL-l~~Iag~~~~~~-G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~ 242 (438)
T 2dpy_A 165 GSGVGKSVL-LGMMARYTRADV-IVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDF 242 (438)
T ss_dssp CTTSSHHHH-HHHHHHHSCCSE-EEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHH-HHHHhcccCCCe-EEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999 799999988885 578899999999999987655555677999999999999999999999999999999
Q ss_pred HHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeE
Q psy2894 250 RDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPI 329 (515)
Q Consensus 250 rd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~ 329 (515)
++++++|+.++|++++|+.++|++++++++||...|||++.++.+.+++||+++. .+.+||||++++
T Consensus 243 ~~~~~~v~~~ld~l~~lS~g~qrvslAl~~p~~t~glD~~~~~~l~~ll~r~~~~-------------~~~~GsiT~~~t 309 (438)
T 2dpy_A 243 RDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNG-------------IHGGGSITAFYT 309 (438)
T ss_dssp HTTTCEEEEEEECHHHHHHHHHHHHHHTTCCCCSSSCCTTHHHHHHHHHTTCSCC-------------STTSCEEEEEEE
T ss_pred HhCCCCHHHHHHhHHHHHHHHHHHHHHhCCCcccccCCHHHHHHHHHHHHHHHhc-------------cCCCCcccceeE
Confidence 9999999999999999999999999999999999999999999999999999863 112599999999
Q ss_pred EeecCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHHHhhHHHHHHHHh
Q psy2894 330 IETQAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQF 409 (515)
Q Consensus 330 v~~~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~la~y~el~~~~~~ 409 (515)
|.+.++|+++|++|+++++.||+|++++++++.++|||||++.|+||++..++.++|++++.++|+.|++|+++++|+++
T Consensus 310 Vlv~tHdl~~~iad~v~~l~dG~Ivl~~~~~~~~~~Paidv~~s~sR~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 389 (438)
T 2dpy_A 310 VLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALITEQHYARVRLFKQLLSSFQRNRDLVSV 389 (438)
T ss_dssp EECSSSCSCCHHHHHHHHHSSEEEEECHHHHHTTCSSCEEEEEEEETTHHHHSCHHHHHHHHHHHHHHHHHHHGGGTSSS
T ss_pred EEEeCCCccchhhceEEEEeCcEEEEeCCHHHccCCCCcCCcccccccccccCCHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc---CCCHHHHHHHHhhHHHhhcccccccCCCCHHHHHHHHHHHh
Q psy2894 410 SS---DLDLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAIN 452 (515)
Q Consensus 410 g~---~ld~~~~~~l~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~~ 452 (515)
|. +.|+++++++.++++|++||+|++++++++++++..+|.+.
T Consensus 390 ~~~~~~~d~~~~~~i~~~~~~~~fl~Q~~~~~~~~~~~~~~~~~~~ 435 (438)
T 2dpy_A 390 GAYAKGSDPMLDKAITLWPQLEAFLQQGIFERADWEDSLQALDLIF 435 (438)
T ss_dssp SCCCTTSCHHHHHHHTTHHHHHHHHCCCTTCCCCHHHHHHHHHHHS
T ss_pred cCCcCCCCHHHHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence 84 78999999999999999999999999999999999999763
No 17
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=100.00 E-value=1.4e-73 Score=594.14 Aligned_cols=257 Identities=18% Similarity=0.218 Sum_probs=241.8
Q ss_pred CccccCCCc----cccccccccccccccccCCcceeeecCCCCCccHHH--HHHHHHhcCCCeEEEEEEecCChHHHHHH
Q psy2894 135 GVISRQSVS----EPLQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIA--IDIIINQKNKNVTCIYVAIGQKISSIKKT 208 (515)
Q Consensus 135 ~~~~R~~~~----epl~TGik~ID~l~pigrGqr~~I~g~~g~GKt~l~--~~~i~~~~~~~~~~V~~~iGer~~ev~~~ 208 (515)
.|.+|..+. +|++||||+||.++|||+|||++|||++|+|||+|+ +...+++++.++.|||++||||++||++|
T Consensus 143 yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~ 222 (422)
T 3ice_A 143 HANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 222 (422)
T ss_dssp SCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHH
T ss_pred CCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHH
Confidence 345666666 799999999999999999999999999999999996 33344567889999999999999999999
Q ss_pred HHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCC
Q psy2894 209 ANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPG 288 (515)
Q Consensus 209 ~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg 288 (515)
++++ +++||++|+|+||.+|++++++|+++||||||+|+||||++||+||||+||||+|+++||||+ +||||
T Consensus 223 ~~~~-------~~~vV~atadep~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~A~A~revs~~~Ge~ps-~Gyp~ 294 (422)
T 3ice_A 223 QRLV-------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDA 294 (422)
T ss_dssp HTTC-------SSEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHHHHHHHHHSCCSSCBCS-SSCBH
T ss_pred HHHh-------CeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHHHHHHHHHHHhcCCCCC-CCcCH
Confidence 9877 479999999999999999999999999999999999999999999999999999999999998 99999
Q ss_pred chhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEeec-CCCCCCcccccccccCCeEEEecchhhcCCCcCc
Q psy2894 289 DIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIETQ-AGDISAFVPTNVISITDGQIFLDSSLFNSGIRPA 367 (515)
Q Consensus 289 ~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~~-~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PA 367 (515)
++|+.++||+|||+++ .+ +||||++|+|+++ +||++||||+++++|+||||+|||+||++|||||
T Consensus 295 ~~~~~~~rl~erA~~~-------------~~-~GSIT~i~tvlv~tgdd~~dpI~d~~~~i~dg~ivLsR~La~~giyPA 360 (422)
T 3ice_A 295 NALHRPKRFFGAARNV-------------EE-GGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPA 360 (422)
T ss_dssp HHHHHHHHHHTTCEEE-------------SS-SCEEEEEEEECCSSSCHHHHHHHHHHHHHCSEEEEBCHHHHHTTCSSC
T ss_pred HHHhhhHHHHHhcccc-------------CC-CcceeEEEEEEecCCCcccchHHHHhcccCCceEEEcHHHHhcCCCCc
Confidence 9999999999999997 44 8999999999999 8999999999999999999999999999999999
Q ss_pred cccCCCccccccccchHHHHHHHHHHHHHHHhhHHHHHHHHhccCC
Q psy2894 368 INAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSSDL 413 (515)
Q Consensus 368 Idv~~S~SRv~~~~~~~~~~~~a~~lr~~la~y~el~~~~~~g~~l 413 (515)
|||+.|+||+++.++.++|++++.++|+.|++|++++++.++...+
T Consensus 361 IDvl~S~SR~~~~~~~~~~~~~a~~lr~~la~~~e~~~~~~ll~~~ 406 (422)
T 3ice_A 361 IDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKL 406 (422)
T ss_dssp BCTTTCEESSGGGSSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHTT
T ss_pred cCccccccccchhhCCHHHHHHHHHHHHHHHhCchHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999876554
No 18
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=100.00 E-value=1.4e-70 Score=570.02 Aligned_cols=340 Identities=24% Similarity=0.396 Sum_probs=324.5
Q ss_pred ccccccCccccceEecccCCcCCCCC-CCCcccccccccCCCCccccCCCccccccccccccccccccCCcceeeecCCC
Q psy2894 94 ILEVPIGPELCGRVINALGDPIDGKG-PIKTKLTAPIEKVAPGVISRQSVSEPLQTGIKAIDSIVPIGKGQRELIIGDRQ 172 (515)
Q Consensus 94 ~~~vpvg~~lLGrViD~lG~pid~~~-~~~~~~~~~i~~~~p~~~~R~~~~epl~TGik~ID~l~pigrGqr~~I~g~~g 172 (515)
+++||||++|||||+|++|+|||+++ ++...+++|++..+|++++|..+++++.||+++||.++||++||+++|+|++|
T Consensus 2 ~~~~~vg~~~lGrv~~~~g~p~d~~~~~~~~~~~~~i~~~~~~~i~~~~l~~~~~tg~~ald~ll~i~~Gq~~gIiG~nG 81 (347)
T 2obl_A 2 SHKIRVGDALLGRLIDGIGRPMESNIVAPYLPFERSLYAEPPDPLLRQVIDQPFILGVRAIDGLLTCGIGQRIGIFAGSG 81 (347)
T ss_dssp CCEEEECGGGTTCEECTTSCBCSCCSSCCCCCEEEESCCCCSCSTTCCCCCSEECCSCHHHHHHSCEETTCEEEEEECTT
T ss_pred CceeecCccccCCEECCCCCcCCCCCCCCCCCCcccccCCCCCCeeecccceecCCCCEEEEeeeeecCCCEEEEECCCC
Confidence 67999999999999999999999999 88877889999999999999999999999999999999999999999999999
Q ss_pred CCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHc
Q psy2894 173 TGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDH 252 (515)
Q Consensus 173 ~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~ 252 (515)
+||||| +.+|+++...+. ++|+++|++.+|+.+++.. .+.+.+++++++++++++|+..|+.+++.++++||||+++
T Consensus 82 aGKTTL-l~~I~g~~~~~~-g~i~~~G~~~~ev~~~i~~-~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~ 158 (347)
T 2obl_A 82 VGKSTL-LGMICNGASADI-IVLALIGERGREVNEFLAL-LPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQ 158 (347)
T ss_dssp SSHHHH-HHHHHHHSCCSE-EEEEEESCCHHHHHHHHTT-SCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHH-HHHHhcCCCCCE-EEEEEecccHHHHHHHHHh-hhhhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 999999 799999988885 6889999999999998876 3334678999999999999999999999999999999999
Q ss_pred CCcEEEEEechhHHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHHHHHhhccchhhhhcccCCcccCCCCceeeeeEEee
Q psy2894 253 GKDALVVYDDLSKQAVAYRQISLLLKRPPGREAYPGDIFYLHSRLLERSARVNIKYVENYTNGKVTGKTGSLTAIPIIET 332 (515)
Q Consensus 253 G~~Vlli~Dsltr~a~A~reisl~l~~pp~~~gypg~vf~~~~rl~ERag~~~~~~~~~~~~~~~~g~~GSiT~l~~v~~ 332 (515)
|+||++++|++++|+.++|++++++++||.+.||||++|+.+.+|+||+++. ++||||++++|++
T Consensus 159 ~~~vl~~ld~~~~lS~g~r~v~lal~~p~~t~Gldp~~~~~l~~ller~~~~---------------~~GsiT~~~tVl~ 223 (347)
T 2obl_A 159 GKNVLLMMDSVTRYARAARDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPA---------------PKGSITAIYTVLL 223 (347)
T ss_dssp TCEEEEEEETHHHHHHHHHHHHHHTTCCCCBTTBCHHHHHHHHHHHTTCEEC---------------SSSEEEEEEEEEC
T ss_pred cccHHHHHhhHHHHHHHHHHHHHHcCCCCcccCCCHHHHHHHHHHHHHHhCC---------------CCCCeeeEEEEEE
Confidence 9999999999999999999999999999999999999999999999999762 2699999999999
Q ss_pred cCCCCCCcccccccccCCeEEEecchhhcCCCcCccccCCCccccccccchHHHHHHHHHHHHHHHhhHHHHHHHHhcc-
Q psy2894 333 QAGDISAFVPTNVISITDGQIFLDSSLFNSGIRPAINAGISVSRVGGAAQIKFIKKLSSNIRTDLAQYRELAAFSQFSS- 411 (515)
Q Consensus 333 ~~~D~s~pI~~~~~si~Dg~i~L~r~La~~g~~PAIdv~~S~SRv~~~~~~~~~~~~a~~lr~~la~y~el~~~~~~g~- 411 (515)
+++|+++|++|++++++||||+|++++++.++|||||++.|+||+++.++.++|++++.++|+.|++|+|+++++++|.
T Consensus 224 ~thdl~~~i~d~v~~i~dG~Ivl~~~l~~~~~~Paid~~~S~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 303 (347)
T 2obl_A 224 ESDNVNDPIGDEVRSILDGHIVLTRELAEENHFPAIDIGLSASRVMHNVVTSEHLRAAAECKKLIATYKNPELLIRIGEY 303 (347)
T ss_dssp CSSCCCCHHHHHHHHHCSEEEEBCHHHHTTTCSSCBCGGGCEETTHHHHSCHHHHHHHHHHHHHHHHCCCTHHHHTTTCC
T ss_pred eCCCCCChhhhheEEeeCcEEEEeCCHHHcCCCCCcCccccccccccccCCHHHHHHHHHHHHHHHccHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred --CCCHHHHHHHHhhHHHhhcccccccCCCCHHHHHHHHHHH
Q psy2894 412 --DLDLVTRKQLDRGARVTELLKQKQYSPLPVSLIAVILFAI 451 (515)
Q Consensus 412 --~ld~~~~~~l~~~~~i~~~L~Q~~~~~~~~~~~~~~l~~~ 451 (515)
+.|++++.++++++++++||+|++++++++++|+..++.+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~fl~Q~~~~~~~~~~~~~~~~~~ 345 (347)
T 2obl_A 304 TMGQDPEADKAIKNRKLIQNFIQQSTKDISSYEKTIESLFKV 345 (347)
T ss_dssp CCCSCHHHHHHHHTHHHHHHHHCCCTTCCCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999876
No 19
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.97 E-value=4.2e-05 Score=72.81 Aligned_cols=64 Identities=19% Similarity=0.460 Sum_probs=52.6
Q ss_pred cccccccccccccc--ccCCcceeeecCCCCCccHHHHHHHHHh-cCCCeEEEEEEecCChHHHHHH
Q psy2894 145 PLQTGIKAIDSIVP--IGKGQRELIIGDRQTGKSSIAIDIIINQ-KNKNVTCIYVAIGQKISSIKKT 208 (515)
Q Consensus 145 pl~TGik~ID~l~p--igrGqr~~I~g~~g~GKt~l~~~~i~~~-~~~~~~~V~~~iGer~~ev~~~ 208 (515)
-+.||+..+|-++. +-+|+-..|.|+||+|||+++++.+.|. ...+-.|+|+...+..+++.+-
T Consensus 11 ri~TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~ 77 (251)
T 2zts_A 11 RVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRRE 77 (251)
T ss_dssp EECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHH
T ss_pred eecCCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHH
Confidence 48899999999997 8899999999999999999998887763 3334457888888887766544
No 20
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.91 E-value=1.1e-05 Score=82.45 Aligned_cols=110 Identities=16% Similarity=0.299 Sum_probs=73.9
Q ss_pred ccccccccccccccc------ccCCcceeeecCCCCCccHHHHHHHHHhcC--CCeEEEEEEecCChHHHHHHHHHHhhc
Q psy2894 144 EPLQTGIKAIDSIVP------IGKGQRELIIGDRQTGKSSIAIDIIINQKN--KNVTCIYVAIGQKISSIKKTANLLEKY 215 (515)
Q Consensus 144 epl~TGik~ID~l~p------igrGqr~~I~g~~g~GKt~l~~~~i~~~~~--~~~~~V~~~iGer~~ev~~~~~~l~~~ 215 (515)
+.+.||+..+|.++. +-+| ++.|+|++|+|||+|+++.+++... .+-.|+|+-.-+..+.. ....-
T Consensus 5 ~risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~l 78 (333)
T 3io5_A 5 DVVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSM 78 (333)
T ss_dssp -CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHT
T ss_pred CEecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHh
Confidence 457899999999998 7789 9999999999999999998887433 36679998766655432 13333
Q ss_pred CCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHH--HHcCCcEEEEEechhHHH
Q psy2894 216 GAMPYTIIVAATASDSASMQFISAYSGCTIGEYF--RDHGKDALVVYDDLSKQA 267 (515)
Q Consensus 216 ~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~f--rd~G~~Vlli~Dsltr~a 267 (515)
|.--..++++.+. . .++. ++.+++.+ ...+.-.|||+||++-+.
T Consensus 79 Gvd~d~llv~~~~-~--~E~~-----~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 79 GVDPERVIHTPVQ-S--LEQL-----RIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp TCCGGGEEEEECS-B--HHHH-----HHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred CCCHHHeEEEcCC-C--HHHH-----HHHHHHHHHHhhccCceEEEEecccccc
Confidence 4322234444332 1 2332 12234443 245778999999999775
No 21
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.70 E-value=5.1e-05 Score=78.20 Aligned_cols=111 Identities=16% Similarity=0.284 Sum_probs=73.7
Q ss_pred cccccccccccccccc---ccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCC
Q psy2894 143 SEPLQTGIKAIDSIVP---IGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMP 219 (515)
Q Consensus 143 ~epl~TGik~ID~l~p---igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~ 219 (515)
.+.+.||+..+|.++. +-+|.-++|.|++|+|||+|++..+.+....+-.|+|+...+..+.. . ....|.-.
T Consensus 39 ~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~--~---a~~lG~~~ 113 (349)
T 2zr9_A 39 ISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPE--Y---AKKLGVDT 113 (349)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH--H---HHHTTCCG
T ss_pred CCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHH--H---HHHcCCCH
Confidence 3578999999999987 55999999999999999999887776654444567888776554432 1 22233322
Q ss_pred cEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHH
Q psy2894 220 YTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQA 267 (515)
Q Consensus 220 ~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a 267 (515)
..+.+..+ + ...+. +.+++.+...+.--+||+|+++.+.
T Consensus 114 ~~l~i~~~-~--~~e~~------l~~~~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 114 DSLLVSQP-D--TGEQA------LEIADMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp GGCEEECC-S--SHHHH------HHHHHHHHTTTCCSEEEEECGGGCC
T ss_pred HHeEEecC-C--CHHHH------HHHHHHHHhcCCCCEEEEcChHhhc
Confidence 22333322 1 13332 3456666655666689999999765
No 22
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.66 E-value=5.5e-05 Score=78.31 Aligned_cols=110 Identities=20% Similarity=0.303 Sum_probs=70.4
Q ss_pred ccccccccccccccc---ccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCc
Q psy2894 144 EPLQTGIKAIDSIVP---IGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPY 220 (515)
Q Consensus 144 epl~TGik~ID~l~p---igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~ 220 (515)
+.+.||+..+|.++. +-+|.-+.|+|++|+|||||++..+.+....+-.|+|+..-+..+.. ..+.+ |....
T Consensus 40 ~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~--ra~rl---gv~~~ 114 (356)
T 3hr8_A 40 EVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV--YAKNL---GVDLK 114 (356)
T ss_dssp CEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH--HHHHH---TCCGG
T ss_pred ceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH--HHHHc---CCchh
Confidence 468999999999998 67999999999999999999877766644344457787654433332 22333 32222
Q ss_pred EEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHH
Q psy2894 221 TIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQA 267 (515)
Q Consensus 221 t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a 267 (515)
.+.+... .. ..+ .+.+++.+...+..-++|+||++.+.
T Consensus 115 ~l~i~~~-~~--~e~------~l~~~~~l~~~~~~dlvVIDSi~~l~ 152 (356)
T 3hr8_A 115 SLLISQP-DH--GEQ------ALEIVDELVRSGVVDLIVVDSVAALV 152 (356)
T ss_dssp GCEEECC-SS--HHH------HHHHHHHHHHTSCCSEEEEECTTTCC
T ss_pred hhhhhhc-cC--HHH------HHHHHHHHhhhcCCCeEEehHhhhhc
Confidence 2333322 11 222 23445665555555678889998765
No 23
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.60 E-value=7.4e-05 Score=75.77 Aligned_cols=117 Identities=18% Similarity=0.225 Sum_probs=75.0
Q ss_pred ccccccccccccccc--cccCCcceeeecCCCCCccHHHHHHHHHhcCC------CeEEEEEEecCC--hHHHHHHHHHH
Q psy2894 143 SEPLQTGIKAIDSIV--PIGKGQRELIIGDRQTGKSSIAIDIIINQKNK------NVTCIYVAIGQK--ISSIKKTANLL 212 (515)
Q Consensus 143 ~epl~TGik~ID~l~--pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~~------~~~~V~~~iGer--~~ev~~~~~~l 212 (515)
...+.||+..+|.++ -+-+|+-+.|.|++|+|||++++..+.+.... +-.|+|+..-+. .+.+.+..+.+
T Consensus 86 ~~~i~TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 86 VKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp CCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CCcccCCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999998 57899999999999999999987777663222 456888876654 55555554432
Q ss_pred hhcCC-----CCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHc-CCcEEEEEechhHHHHH
Q psy2894 213 EKYGA-----MPYTIIVAATASDSASMQFISAYSGCTIGEYFRDH-GKDALVVYDDLSKQAVA 269 (515)
Q Consensus 213 ~~~~~-----~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~-G~~Vlli~Dsltr~a~A 269 (515)
|. +++ +.+... .. ..+.. ..+..++.+..+ +.--+||+|+++.+..+
T Consensus 166 ---g~~~~~~~~~-l~~~~~-~~--~~~~~---~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 166 ---GLDIDNVMNN-IYYIRA-IN--TDHQI---AIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp ---TCCHHHHHHT-EEEEEC-CS--HHHHH---HHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred ---CCCHHHHhcc-EEEEeC-CC--HHHHH---HHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 21 122 333322 21 11111 112233333333 56678999999998754
No 24
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.58 E-value=9.8e-05 Score=76.36 Aligned_cols=110 Identities=18% Similarity=0.360 Sum_probs=71.7
Q ss_pred cccccccccccccccc---ccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCC-C
Q psy2894 143 SEPLQTGIKAIDSIVP---IGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGA-M 218 (515)
Q Consensus 143 ~epl~TGik~ID~l~p---igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~-~ 218 (515)
.+.+.||+..+|.++. +-+|.-+.|.|++|+|||+||+..+.+....+-.|+|+..-+..+... .+. .|. .
T Consensus 41 ~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~--a~~---~g~~~ 115 (356)
T 1u94_A 41 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY--ARK---LGVDI 115 (356)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH--HHH---TTCCG
T ss_pred CCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHH--HHH---cCCCh
Confidence 3578999999999987 669999999999999999999887776444444578887755443321 122 232 2
Q ss_pred CcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHH
Q psy2894 219 PYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQA 267 (515)
Q Consensus 219 ~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a 267 (515)
++ +.+..+ + ...+ ...+++.+...+.--+||+|+++.+.
T Consensus 116 ~~-l~i~~~-~--~~e~------~~~~~~~l~~~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 116 DN-LLCSQP-D--TGEQ------ALEICDALARSGAVDVIVVDSVAALT 154 (356)
T ss_dssp GG-CEEECC-S--SHHH------HHHHHHHHHHHTCCSEEEEECGGGCC
T ss_pred hh-eeeeCC-C--CHHH------HHHHHHHHHhccCCCEEEEcCHHHhc
Confidence 22 233322 1 1222 23455656554555588999999765
No 25
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.58 E-value=0.0002 Score=67.37 Aligned_cols=41 Identities=22% Similarity=0.386 Sum_probs=35.9
Q ss_pred cccccccccccccc--cccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 144 EPLQTGIKAIDSIV--PIGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 144 epl~TGik~ID~l~--pigrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
+.+.||+..+|.++ -+-+|+..+|+|++|+|||||+ .+|+.
T Consensus 5 ~~i~tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll-~~l~g 47 (231)
T 4a74_A 5 GRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLA-HTLAV 47 (231)
T ss_dssp CEECCSCHHHHHHTTSSEESSEEEEEEESTTSSHHHHH-HHHHH
T ss_pred CccCCCChhHHhHhcCCCCCCcEEEEECCCCCCHHHHH-HHHHH
Confidence 46889999999887 6889999999999999999995 66654
No 26
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.57 E-value=4.5e-05 Score=71.41 Aligned_cols=52 Identities=25% Similarity=0.374 Sum_probs=41.4
Q ss_pred ccccccccccccc--ccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecC
Q psy2894 146 LQTGIKAIDSIVP--IGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQ 200 (515)
Q Consensus 146 l~TGik~ID~l~p--igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGe 200 (515)
+.||+..+|.++. +-+|+-.+|.|++|+|||+++.. ++.. .+-.++|+..-+
T Consensus 2 i~tG~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~-l~~~--~~~~v~~i~~~~ 55 (220)
T 2cvh_A 2 LSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQ-TGLL--SGKKVAYVDTEG 55 (220)
T ss_dssp BCCSCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHH-HHHH--HCSEEEEEESSC
T ss_pred cccCcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHH-HHHH--cCCcEEEEECCC
Confidence 5799999999996 99999999999999999999744 4432 233567777655
No 27
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.52 E-value=0.00013 Score=75.83 Aligned_cols=111 Identities=20% Similarity=0.333 Sum_probs=73.7
Q ss_pred cccccccccccccccc---ccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCC
Q psy2894 143 SEPLQTGIKAIDSIVP---IGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMP 219 (515)
Q Consensus 143 ~epl~TGik~ID~l~p---igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~ 219 (515)
.+.+.||+..+|.++. +-+|.-+.|.|++|+|||+|++..+.+....+-.|+|+..-+..+... ....|.-.
T Consensus 52 ~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~-----a~~~g~d~ 126 (366)
T 1xp8_A 52 VQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVY-----ARALGVNT 126 (366)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH-----HHHTTCCG
T ss_pred CceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHH-----HHHcCCCH
Confidence 3578999999999997 568999999999999999999888776543444678888776555431 12223211
Q ss_pred cEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHH
Q psy2894 220 YTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQA 267 (515)
Q Consensus 220 ~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a 267 (515)
.-+.+..+ + ...+ .+.+++.+...+.--+||+|+++.+.
T Consensus 127 ~~l~i~~~-~--~~e~------~l~~l~~l~~~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 127 DELLVSQP-D--NGEQ------ALEIMELLVRSGAIDVVVVDSVAALT 165 (366)
T ss_dssp GGCEEECC-S--SHHH------HHHHHHHHHTTTCCSEEEEECTTTCC
T ss_pred HHceeecC-C--cHHH------HHHHHHHHHhcCCCCEEEEeChHHhc
Confidence 22333322 2 1222 23455666655556688999999753
No 28
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.51 E-value=0.00038 Score=71.22 Aligned_cols=120 Identities=13% Similarity=0.167 Sum_probs=73.4
Q ss_pred ccccccccccccccc--cccCCcceeeecCCCCCccHHHHHHHHHh-cC-----CCeEEEEEEecCC--hHHHHHHHHHH
Q psy2894 143 SEPLQTGIKAIDSIV--PIGKGQRELIIGDRQTGKSSIAIDIIINQ-KN-----KNVTCIYVAIGQK--ISSIKKTANLL 212 (515)
Q Consensus 143 ~epl~TGik~ID~l~--pigrGqr~~I~g~~g~GKt~l~~~~i~~~-~~-----~~~~~V~~~iGer--~~ev~~~~~~l 212 (515)
.+.+.||+..+|.++ -+-+|+-+.|+|++|+|||++++....+. .. .+-.|+|+..-.. ...+.+..+.+
T Consensus 101 ~~~i~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 101 VFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp CCCBCCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred cceeecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 456899999999998 58899999999999999999987777762 21 3456788876653 44555544332
Q ss_pred hhc--CCCCcEEEEEeCCCCCHHhhHHHHhhhhhhH-HHHHHc-CCcEEEEEechhHHHHH
Q psy2894 213 EKY--GAMPYTIIVAATASDSASMQFISAYSGCTIG-EYFRDH-GKDALVVYDDLSKQAVA 269 (515)
Q Consensus 213 ~~~--~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iA-E~frd~-G~~Vlli~Dsltr~a~A 269 (515)
.-. ..+++ +.+....+- .+... .+..+ +.++.. +.--+||+|+++.+..+
T Consensus 181 g~~~~~~l~~-l~~~~~~~~---e~~~~---ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 181 NVDHDAVLDN-VLYARAYTS---EHQME---LLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp TCCHHHHHHT-EEEEECCST---THHHH---HHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred CCCHHHHHhc-eeEeecCCH---HHHHH---HHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 100 01123 233322111 11111 11122 333342 55668999999998754
No 29
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.44 E-value=0.00026 Score=67.22 Aligned_cols=115 Identities=18% Similarity=0.216 Sum_probs=66.5
Q ss_pred cccccccccccccc--cccCCcceeeecCCCCCccHHHHHHHHH-hcC-----CCeEEEEEEecCC--hHHHHHHHHHHh
Q psy2894 144 EPLQTGIKAIDSIV--PIGKGQRELIIGDRQTGKSSIAIDIIIN-QKN-----KNVTCIYVAIGQK--ISSIKKTANLLE 213 (515)
Q Consensus 144 epl~TGik~ID~l~--pigrGqr~~I~g~~g~GKt~l~~~~i~~-~~~-----~~~~~V~~~iGer--~~ev~~~~~~l~ 213 (515)
+.+.||+..+|-++ .+-+|+-.+|.|++|+|||+|+.....+ ... .+-.++|+..-+. ...+.+..+.
T Consensus 4 ~~i~tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~-- 81 (243)
T 1n0w_A 4 IQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAER-- 81 (243)
T ss_dssp CEECCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHH--
T ss_pred eEecCCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHH--
Confidence 46899999999999 5889999999999999999996444443 121 1345677765442 3344444332
Q ss_pred hcCCC-----CcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHHH
Q psy2894 214 KYGAM-----PYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAV 268 (515)
Q Consensus 214 ~~~~~-----~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~ 268 (515)
.+.. ++ +.+.... ........ +...+.+.....--+|++|+++.+..
T Consensus 82 -~g~~~~~~~~~-~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 82 -YGLSGSDVLDN-VAYARAF--NTDHQTQL----LYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp -TTCCHHHHHHT-EEEEECC--SHHHHHHH----HHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred -cCCCHHHHhhC-eEEEecC--CHHHHHHH----HHHHHHHHhcCCceEEEEeCchHHHH
Confidence 2322 23 2222221 11111111 11222233335566889999997643
No 30
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.42 E-value=0.00025 Score=71.46 Aligned_cols=120 Identities=18% Similarity=0.121 Sum_probs=75.3
Q ss_pred ccccccccccccccc--cccCCcceeeecCCCCCccHHHHHHHHHh-c-----------CCC----eEEEEEEecCC--h
Q psy2894 143 SEPLQTGIKAIDSIV--PIGKGQRELIIGDRQTGKSSIAIDIIINQ-K-----------NKN----VTCIYVAIGQK--I 202 (515)
Q Consensus 143 ~epl~TGik~ID~l~--pigrGqr~~I~g~~g~GKt~l~~~~i~~~-~-----------~~~----~~~V~~~iGer--~ 202 (515)
...+.||+..+|.++ -+-+|+-+.|.|++|+|||+++++...+. . ..+ -.|+|+..-+. .
T Consensus 77 ~~~i~TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~ 156 (322)
T 2i1q_A 77 VWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRP 156 (322)
T ss_dssp CCEECCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCH
T ss_pred CCeecCCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCH
Confidence 457899999999998 57789999999999999999998777662 1 112 57888887765 5
Q ss_pred HHHHHHHHHHhhc--CCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHc-CCcEEEEEechhHHHHH
Q psy2894 203 SSIKKTANLLEKY--GAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDH-GKDALVVYDDLSKQAVA 269 (515)
Q Consensus 203 ~ev~~~~~~l~~~--~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~-G~~Vlli~Dsltr~a~A 269 (515)
+.+.+..+.+.-. ..+++ +.+... .. ..+.. ..+...+.+..+ +.--+||+|+++.+..+
T Consensus 157 ~~l~~~~~~~g~~~~~~~~~-l~~~~~-~~--~~~~~---~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 219 (322)
T 2i1q_A 157 ERIMQMAEHAGIDGQTVLDN-TFVARA-YN--SDMQM---LFAEKIEDLIQEGNNIKLVVIDSLTSTFRN 219 (322)
T ss_dssp HHHHHHHHHHTCCHHHHHHT-EEEEEC-SS--HHHHH---HHHHTHHHHHHTTCEEEEEEEECSSHHHHH
T ss_pred HHHHHHHHHcCCCHHHHhcC-EEEEeC-CC--HHHHH---HHHHHHHHHHhhccCccEEEEECcHHHHHH
Confidence 6666655444210 00123 233322 11 12111 112223333333 55668999999998754
No 31
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.33 E-value=0.00015 Score=68.92 Aligned_cols=65 Identities=25% Similarity=0.387 Sum_probs=50.0
Q ss_pred cccccccccccccc--cccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHH
Q psy2894 144 EPLQTGIKAIDSIV--PIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKT 208 (515)
Q Consensus 144 epl~TGik~ID~l~--pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~ 208 (515)
+.+.||++.+|-++ -+-+|+-.+|.|++|+|||++++..+.+....+-.++|+..-+...++.+.
T Consensus 3 ~~i~tG~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~ 69 (247)
T 2dr3_A 3 RRVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQN 69 (247)
T ss_dssp CEECCCCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHH
T ss_pred ccccCCchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHH
Confidence 35789999999986 477899999999999999999877766654444457888876665554443
No 32
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.29 E-value=0.00016 Score=67.74 Aligned_cols=65 Identities=29% Similarity=0.412 Sum_probs=46.9
Q ss_pred ccccccccccccccc--ccCCcceeeecCCCCCccHHHHHHHH-HhcCCCeEEEEEEecCChHHHHHHH
Q psy2894 144 EPLQTGIKAIDSIVP--IGKGQRELIIGDRQTGKSSIAIDIII-NQKNKNVTCIYVAIGQKISSIKKTA 209 (515)
Q Consensus 144 epl~TGik~ID~l~p--igrGqr~~I~g~~g~GKt~l~~~~i~-~~~~~~~~~V~~~iGer~~ev~~~~ 209 (515)
+.+.||++.+|.++. +-+|+-++|.|++|+|||||+ ..++ .....+-.++|+.......++.+..
T Consensus 3 ~~i~tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~-~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~ 70 (235)
T 2w0m_A 3 SRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFS-LHFIAKGLRDGDPCIYVTTEESRDSIIRQA 70 (235)
T ss_dssp CEECCSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHH-HHHHHHHHHHTCCEEEEESSSCHHHHHHHH
T ss_pred ccccCCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHH-HHHHHHHHHCCCeEEEEEcccCHHHHHHHH
Confidence 357899999999985 889999999999999999996 4444 3222223457777666555544433
No 33
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.13 E-value=0.0019 Score=65.15 Aligned_cols=64 Identities=14% Similarity=0.156 Sum_probs=50.7
Q ss_pred ccccccccccccccc-ccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHH
Q psy2894 144 EPLQTGIKAIDSIVP-IGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKK 207 (515)
Q Consensus 144 epl~TGik~ID~l~p-igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~ 207 (515)
..+.||+..+|.++- +-+|+-+.|.|+||+|||+++++...+....+..|+|+..-+..+++.+
T Consensus 49 ~~i~TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~~~l~~ 113 (315)
T 3bh0_A 49 TGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIK 113 (315)
T ss_dssp CSBCCSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCHHHHHH
T ss_pred CCccCChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHH
Confidence 468899999999873 7799999999999999999998777665544456777777666665443
No 34
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.08 E-value=0.0015 Score=68.46 Aligned_cols=57 Identities=23% Similarity=0.419 Sum_probs=44.5
Q ss_pred ccccccccccccccc--cccCCcceeeecCCCCCccHHHHHHHHHhcC------CCeEEEEEEec
Q psy2894 143 SEPLQTGIKAIDSIV--PIGKGQRELIIGDRQTGKSSIAIDIIINQKN------KNVTCIYVAIG 199 (515)
Q Consensus 143 ~epl~TGik~ID~l~--pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~------~~~~~V~~~iG 199 (515)
...+.||+..+|.++ -|-+|+-+.|+|++|+|||||+...+++... .+-.++|+..-
T Consensus 157 ~~~i~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 157 LICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp SCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CCccccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 467899999999998 6889999999999999999997655555321 23456776543
No 35
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.06 E-value=0.00038 Score=66.21 Aligned_cols=63 Identities=19% Similarity=0.449 Sum_probs=44.8
Q ss_pred cccccccccccccc--cccCCcceeeecCCCCCccHHHHHHHHH--hcCCCeEEEEEEecCChHHHHH
Q psy2894 144 EPLQTGIKAIDSIV--PIGKGQRELIIGDRQTGKSSIAIDIIIN--QKNKNVTCIYVAIGQKISSIKK 207 (515)
Q Consensus 144 epl~TGik~ID~l~--pigrGqr~~I~g~~g~GKt~l~~~~i~~--~~~~~~~~V~~~iGer~~ev~~ 207 (515)
+.+.||+..+|.++ -+-+|+-++|+|++|+|||||+ .+|+. ....+-.++|+.-.+...++.+
T Consensus 10 ~~i~tg~~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (251)
T 2ehv_A 10 RRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFA-AQFIYKGAEEYGEPGVFVTLEERARDLRR 76 (251)
T ss_dssp CEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHH-HHHHHHHHHHHCCCEEEEESSSCHHHHHH
T ss_pred ceeecCCHhHHHHhcCCCCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhCCCeEEEEEccCCHHHHHH
Confidence 45899999999998 6999999999999999999995 65552 2012223455655554444433
No 36
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.04 E-value=0.00048 Score=83.65 Aligned_cols=114 Identities=18% Similarity=0.325 Sum_probs=79.7
Q ss_pred Ccccccccccccccccc---ccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCC-
Q psy2894 142 VSEPLQTGIKAIDSIVP---IGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGA- 217 (515)
Q Consensus 142 ~~epl~TGik~ID~l~p---igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~- 217 (515)
-.+.+.||+..+|.++. +-+|+-+.|+|++|+|||+||+....+....+-.|+|+...+..++.. .+.+ +.
T Consensus 11 ~~~~isTGi~~LD~lL~~GGi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~--~~~l---g~d 85 (1706)
T 3cmw_A 11 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY--ARKL---GVD 85 (1706)
T ss_dssp -CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH--HHHT---TCC
T ss_pred cCcccccCcHHHHHHhhcCCcCCCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHH--HHhh---ccC
Confidence 34678999999999975 889999999999999999999888777555566789999998877764 2222 21
Q ss_pred CCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHHHHH
Q psy2894 218 MPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAY 270 (515)
Q Consensus 218 ~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~A~ 270 (515)
+++- .+..+ + ...+ ...+.+.+...++.-+||+||++-+....
T Consensus 86 l~~i-~i~~p-~--t~e~------l~~ll~~L~~~~~~~LVVIDSLt~L~~~~ 128 (1706)
T 3cmw_A 86 IDNL-LCSQP-D--TGEQ------ALEICDALARSGAVDVIVVDSVAALTPKA 128 (1706)
T ss_dssp GGGC-EEECC-S--SHHH------HHHHHHHHHHHTCCSEEEESCSTTCCCHH
T ss_pred ccce-eeecc-C--cHHH------HHHHHHHHHhccCCCEEEEcchhhhcccc
Confidence 2222 23322 1 1222 23445566655777899999999876543
No 37
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.97 E-value=0.0008 Score=82.80 Aligned_cols=115 Identities=18% Similarity=0.319 Sum_probs=82.6
Q ss_pred CCcccccccccccccccc---ccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCC
Q psy2894 141 SVSEPLQTGIKAIDSIVP---IGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGA 217 (515)
Q Consensus 141 ~~~epl~TGik~ID~l~p---igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~ 217 (515)
+-.+.+.||+..+|.++. +-+|.-..|.|++|+|||+++++.+.+....+-.|+|+..-+..++.. .+.+ |.
T Consensus 10 ~~~~~i~TGi~~LD~lLg~GGip~G~vtlI~G~pGsGKT~lalq~a~~~~~~Ge~vlYI~tEes~~~~r--a~~l---G~ 84 (2050)
T 3cmu_A 10 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY--ARKL---GV 84 (2050)
T ss_dssp --CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH--HHHT---TC
T ss_pred cCCCeeccCcHHHHHHHhcCCCcCCEEEEEEeCCCCCHHHHHHHHHHHhhccCCceEEEEccCcchhhH--Hhhh---cc
Confidence 344678999999999874 779999999999999999999998888766666799999998887765 2222 22
Q ss_pred -CCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHHHHH
Q psy2894 218 -MPYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVAY 270 (515)
Q Consensus 218 -~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~A~ 270 (515)
+++-. +..+ + ...+ ...+.+++...+.--+||+||+|-+....
T Consensus 85 dl~~i~-v~~p-~--~~e~------ll~il~~L~~~~~~~lVVIDSISaL~~~~ 128 (2050)
T 3cmu_A 85 DIDNLL-CSQP-D--TGEQ------ALEICDALARSGAVDVIVVDSVAALTPKA 128 (2050)
T ss_dssp CTTTCE-EECC-S--SHHH------HHHHHHHHHHHTCCSEEEESCGGGCCCHH
T ss_pred Ccccce-ecCC-C--cHHH------HHHHHHHHHhccCCcEEEEcChHHhhhhc
Confidence 34433 3322 2 1222 23456667666778899999999876543
No 38
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.88 E-value=0.0015 Score=67.03 Aligned_cols=120 Identities=18% Similarity=0.187 Sum_probs=69.7
Q ss_pred ccccccccccccccc--cccCCcceeeecCCCCCccHHHHHHHHHhc-C--C---CeEEEEEEecCC--hHHHHHHHHHH
Q psy2894 143 SEPLQTGIKAIDSIV--PIGKGQRELIIGDRQTGKSSIAIDIIINQK-N--K---NVTCIYVAIGQK--ISSIKKTANLL 212 (515)
Q Consensus 143 ~epl~TGik~ID~l~--pigrGqr~~I~g~~g~GKt~l~~~~i~~~~-~--~---~~~~V~~~iGer--~~ev~~~~~~l 212 (515)
.+.+.||+..+|.++ -+-+|+-.+|+|++|+|||||+.....+.. . . +-.|||+.--+. .+.+..+.+.+
T Consensus 110 ~~~isTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~ 189 (349)
T 1pzn_A 110 IGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNR 189 (349)
T ss_dssp CCEECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTT
T ss_pred CCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHc
Confidence 457889999999995 577999999999999999999744444321 1 1 235777754332 24444433321
Q ss_pred h--hcCCCCcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHc-----CCcEEEEEechhHHHHH
Q psy2894 213 E--KYGAMPYTIIVAATASDSASMQFISAYSGCTIGEYFRDH-----GKDALVVYDDLSKQAVA 269 (515)
Q Consensus 213 ~--~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~-----G~~Vlli~Dsltr~a~A 269 (515)
. ...++++-. +... ..+ ..+. ..+..+..+..+ +.--+||+|++|..-++
T Consensus 190 ~~~~~~v~~ni~-~~~~-~~~-~~~~----~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~ 246 (349)
T 1pzn_A 190 GLDPDEVLKHIY-VARA-FNS-NHQM----LLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRS 246 (349)
T ss_dssp TCCHHHHGGGEE-EEEC-CSH-HHHH----HHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHH
T ss_pred CCCHHHHhhCEE-EEec-CCh-HHHH----HHHHHHHHHHHHhccccCCCCEEEEeCchHhhhh
Confidence 0 001223322 3322 111 1111 122344444443 56779999999987654
No 39
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=96.80 E-value=0.0012 Score=65.44 Aligned_cols=66 Identities=12% Similarity=0.052 Sum_probs=56.6
Q ss_pred ccccccccccccc--ccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHH
Q psy2894 146 LQTGIKAIDSIVP--IGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANL 211 (515)
Q Consensus 146 l~TGik~ID~l~p--igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~ 211 (515)
+.|||.-+|.++. +-+|--.+|.|+||+|||+++++.+.+....+-.|+|+...|...++.+-.+.
T Consensus 3 i~tGi~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e~~~~l~~~~~~ 70 (260)
T 3bs4_A 3 LSWEIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISYPLQLIIRILSR 70 (260)
T ss_dssp BCCSSHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHH
T ss_pred CccCcHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHH
Confidence 5799999999984 55899999999999999999989888877777789999999999887665544
No 40
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.78 E-value=0.0013 Score=80.04 Aligned_cols=110 Identities=18% Similarity=0.356 Sum_probs=77.1
Q ss_pred cccccccccccccccc---ccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCC-C
Q psy2894 143 SEPLQTGIKAIDSIVP---IGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGA-M 218 (515)
Q Consensus 143 ~epl~TGik~ID~l~p---igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~-~ 218 (515)
.+.+.||+..+|.++. +-+|.-+.|.|+||+|||+|+++.+.+....+-.|+|+..-+..+.+. ....|. +
T Consensus 361 ~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~ 435 (1706)
T 3cmw_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-----ARKLGVDI 435 (1706)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH-----HHHTTCCG
T ss_pred CceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHHHH-----HHHcCCCH
Confidence 4578999999999997 779999999999999999999998888655555789988877776652 223333 2
Q ss_pred CcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHH
Q psy2894 219 PYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQA 267 (515)
Q Consensus 219 ~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a 267 (515)
++ +.+..+ + ...+. +.+++.+..++.--+||+||++-+.
T Consensus 436 ~~-L~i~~~-~--~~e~~------l~~l~~lv~~~~~~lVVIDSL~al~ 474 (1706)
T 3cmw_A 436 DN-LLCSQP-D--TGEQA------LEICDALARSGAVDVIVVDSVAALT 474 (1706)
T ss_dssp GG-CEEECC-S--SHHHH------HHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred HH-eEEcCC-C--CHHHH------HHHHHHHHHhcCCCEEEECCHHHhh
Confidence 33 333222 2 23333 2345555555555689999999654
No 41
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.70 E-value=0.0018 Score=79.67 Aligned_cols=110 Identities=18% Similarity=0.365 Sum_probs=77.2
Q ss_pred cccccccccccccccc---ccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCC-C
Q psy2894 143 SEPLQTGIKAIDSIVP---IGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGA-M 218 (515)
Q Consensus 143 ~epl~TGik~ID~l~p---igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~-~ 218 (515)
.+.+.||+..+|-++. +-+|.=+.|.|+||+|||+|+++.+.+....+-.|+|+..-+..+.+. ....|. +
T Consensus 361 ~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~~~-----a~~lGvd~ 435 (2050)
T 3cmu_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-----ARKLGVDI 435 (2050)
T ss_dssp CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH-----HHHTTCCT
T ss_pred CceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHHHH-----HHHcCCCH
Confidence 4569999999999997 889999999999999999999888887655555688887766665542 222333 2
Q ss_pred CcEEEEEeCCCCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHH
Q psy2894 219 PYTIIVAATASDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQA 267 (515)
Q Consensus 219 ~~t~vv~~t~~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a 267 (515)
++ +.|..+ + ...+ .+.+++.+...+.--+||+|+++-+.
T Consensus 436 ~~-L~I~~~-~--~~e~------il~~~~~lv~~~~~~lIVIDSL~al~ 474 (2050)
T 3cmu_A 436 DN-LLCSQP-D--TGEQ------ALEICDALARSGAVDVIVVDSVAALT 474 (2050)
T ss_dssp TT-CEEECC-S--SHHH------HHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred HH-eEEeCC-C--CHHH------HHHHHHHHHHhcCCcEEEECCHHHhh
Confidence 33 333332 2 2233 34556666655556689999999765
No 42
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.67 E-value=0.0081 Score=63.56 Aligned_cols=63 Identities=14% Similarity=0.274 Sum_probs=47.7
Q ss_pred cccccccccccccc-cccCCcceeeecCCCCCccHHHHHHHHHhcC-CCeEEEEEEecCChHHHH
Q psy2894 144 EPLQTGIKAIDSIV-PIGKGQRELIIGDRQTGKSSIAIDIIINQKN-KNVTCIYVAIGQKISSIK 206 (515)
Q Consensus 144 epl~TGik~ID~l~-pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~-~~~~~V~~~iGer~~ev~ 206 (515)
.-+.||+..+|-++ -+-+|+-+.|.|++|+|||++++....+... .+..|+|...-+...++.
T Consensus 184 ~~i~tG~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~ 248 (454)
T 2r6a_A 184 TGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLV 248 (454)
T ss_dssp CSBCCSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHH
T ss_pred CCCCCCcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHH
Confidence 46889999999988 4779999999999999999998777665432 343466766655555443
No 43
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.60 E-value=0.005 Score=65.87 Aligned_cols=64 Identities=8% Similarity=0.037 Sum_probs=50.8
Q ss_pred ccccc-cccccccccc-ccCCcceeeecCCCCCccHHHHHHHHHhcCC-CeEEEEEEecCChHHHHH
Q psy2894 144 EPLQT-GIKAIDSIVP-IGKGQRELIIGDRQTGKSSIAIDIIINQKNK-NVTCIYVAIGQKISSIKK 207 (515)
Q Consensus 144 epl~T-Gik~ID~l~p-igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~-~~~~V~~~iGer~~ev~~ 207 (515)
..+.| |+..+|.++- +-+|+=+.|.|+||+|||+++++...+.... +..|+|+..-+..+++.+
T Consensus 222 ~~i~t~G~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l~~ 288 (503)
T 1q57_A 222 VGLLFSGCTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEETAE 288 (503)
T ss_dssp TCSCCSSCTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHHHH
T ss_pred CCccccchhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHH
Confidence 35778 9999999874 6689999999999999999998887776543 556788887777665543
No 44
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.58 E-value=0.0071 Score=59.71 Aligned_cols=57 Identities=12% Similarity=0.109 Sum_probs=39.5
Q ss_pred cccc-ccccccccc-cccCCcceeeecCCCCCccHHHHHHHHHhc-CCCeEEEEEEecCC
Q psy2894 145 PLQT-GIKAIDSIV-PIGKGQRELIIGDRQTGKSSIAIDIIINQK-NKNVTCIYVAIGQK 201 (515)
Q Consensus 145 pl~T-Gik~ID~l~-pigrGqr~~I~g~~g~GKt~l~~~~i~~~~-~~~~~~V~~~iGer 201 (515)
-+.| |+.++|.+. .+-+|+-++|.|++|+|||||+.....+.. ..+..++|...-..
T Consensus 16 ~i~t~g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~ 75 (296)
T 1cr0_A 16 GLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES 75 (296)
T ss_dssp CBCCCSCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC
T ss_pred CcccCCHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCC
Confidence 4678 999999765 688999999999999999999644333322 22323455544333
No 45
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.46 E-value=0.0098 Score=62.71 Aligned_cols=63 Identities=21% Similarity=0.392 Sum_probs=47.5
Q ss_pred cccccccccccccc-cccCCcceeeecCCCCCccHHHHHHHHHhc-CCCeEEEEEEecCChHHHH
Q psy2894 144 EPLQTGIKAIDSIV-PIGKGQRELIIGDRQTGKSSIAIDIIINQK-NKNVTCIYVAIGQKISSIK 206 (515)
Q Consensus 144 epl~TGik~ID~l~-pigrGqr~~I~g~~g~GKt~l~~~~i~~~~-~~~~~~V~~~iGer~~ev~ 206 (515)
..+.||+..+|.++ .+-+|+-+.|.|+||+|||+++++...+.. ..+..|+|+..-+...++.
T Consensus 181 ~~i~tG~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~ 245 (444)
T 2q6t_A 181 AGVRTGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLT 245 (444)
T ss_dssp --CCCSCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHH
T ss_pred CcccCCCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHH
Confidence 46789999999988 367999999999999999999988777654 2354567776665555443
No 46
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.38 E-value=0.011 Score=60.62 Aligned_cols=63 Identities=16% Similarity=0.302 Sum_probs=49.6
Q ss_pred cccccccccccccc-cccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHH
Q psy2894 144 EPLQTGIKAIDSIV-PIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIK 206 (515)
Q Consensus 144 epl~TGik~ID~l~-pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~ 206 (515)
..+.||+..+|-++ -+-+|+=+.|.|+||+|||+++++...+....+..+.|...-+..+++.
T Consensus 27 ~gi~TG~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~ 90 (338)
T 4a1f_A 27 TGIPTGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLA 90 (338)
T ss_dssp CSBCCSCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHH
T ss_pred CcccCCChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHH
Confidence 46889999999987 4889999999999999999999777766554555566666665555543
No 47
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.26 E-value=0.0069 Score=60.90 Aligned_cols=95 Identities=16% Similarity=0.152 Sum_probs=54.7
Q ss_pred ccCCcceeeecCCCCCccHHHHHHHHHhc-------CCCeEEEEEEecCChHH---HHHHHHHHhhcCCCCcEEEEEeCC
Q psy2894 159 IGKGQRELIIGDRQTGKSSIAIDIIINQK-------NKNVTCIYVAIGQKISS---IKKTANLLEKYGAMPYTIIVAATA 228 (515)
Q Consensus 159 igrGqr~~I~g~~g~GKt~l~~~~i~~~~-------~~~~~~V~~~iGer~~e---v~~~~~~l~~~~~~~~t~vv~~t~ 228 (515)
-+.+..++|.|++|+|||+++ ..+++.. +.+..++++-+...... ..++.+.+... ....
T Consensus 41 ~~~~~~vll~G~~G~GKT~l~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~---------~~~~ 110 (387)
T 2v1u_A 41 GEKPSNALLYGLTGTGKTAVA-RLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVR---------VPFT 110 (387)
T ss_dssp SCCCCCEEECBCTTSSHHHHH-HHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCC---------CCSS
T ss_pred CCCCCcEEEECCCCCCHHHHH-HHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCC---------CCCC
Confidence 367889999999999999995 6666643 22666777776543322 22333333110 0001
Q ss_pred CCCHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHHHH
Q psy2894 229 SDSASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQAVA 269 (515)
Q Consensus 229 ~~~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a~A 269 (515)
..+...-+ -.+.+++...|+.++|++|++..+...
T Consensus 111 ~~~~~~~~------~~l~~~l~~~~~~~vlilDEi~~l~~~ 145 (387)
T 2v1u_A 111 GLSVGEVY------ERLVKRLSRLRGIYIIVLDEIDFLPKR 145 (387)
T ss_dssp CCCHHHHH------HHHHHHHTTSCSEEEEEEETTTHHHHS
T ss_pred CCCHHHHH------HHHHHHHhccCCeEEEEEccHhhhccc
Confidence 11111111 112334445678999999999987653
No 48
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.06 E-value=0.0059 Score=59.88 Aligned_cols=44 Identities=18% Similarity=0.380 Sum_probs=35.9
Q ss_pred Ccccccccccccccccc-ccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 142 VSEPLQTGIKAIDSIVP-IGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 142 ~~epl~TGik~ID~l~p-igrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
..+.+.||+..+|.+++ +-+|+-++|+|++|+|||||++..+..
T Consensus 9 ~~~~i~tg~~~ld~~lggl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 9 ILEAFAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp HHHHHHSCCCCCCEEETTEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHhcCCCCChheeECCccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 45678999999998874 458999999999999999997555433
No 49
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.99 E-value=0.0099 Score=60.61 Aligned_cols=93 Identities=15% Similarity=0.161 Sum_probs=53.0
Q ss_pred CCcceee--ecCCCCCccHHHHHHHHHhcC-------CCeEEEEEEecCChHHHHHHHHHHhh-cCCCCcEEEEEeCCCC
Q psy2894 161 KGQRELI--IGDRQTGKSSIAIDIIINQKN-------KNVTCIYVAIGQKISSIKKTANLLEK-YGAMPYTIIVAATASD 230 (515)
Q Consensus 161 rGqr~~I--~g~~g~GKt~l~~~~i~~~~~-------~~~~~V~~~iGer~~ev~~~~~~l~~-~~~~~~t~vv~~t~~~ 230 (515)
.++.+.| .|++|+|||+|+ ..+++... .+..++|+-+.+.. ...+++..+.. -+.- ......
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~------~~~~~~ 120 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLA-KFTVKRVSEAAAKEGLTVKQAYVNAFNAP-NLYTILSLIVRQTGYP------IQVRGA 120 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHH-HHHHHHHHHHHHHTTCCEEEEEEEGGGCC-SHHHHHHHHHHHHTCC------CCCTTC
T ss_pred CCCEEEEeCcCcCCCCHHHHH-HHHHHHHHHHHhccCCceeEEEEECCCCC-CHHHHHHHHHHHhCCC------CCCCCC
Confidence 5667888 899999999995 66665432 25667888775432 33444444322 1110 000011
Q ss_pred CHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhHHH
Q psy2894 231 SASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSKQA 267 (515)
Q Consensus 231 ~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a 267 (515)
+.. . ..-.+.+++...++.++|++|++-.+.
T Consensus 121 ~~~-~-----~~~~l~~~l~~~~~~~llvlDe~~~l~ 151 (412)
T 1w5s_A 121 PAL-D-----ILKALVDNLYVENHYLLVILDEFQSML 151 (412)
T ss_dssp CHH-H-----HHHHHHHHHHHHTCEEEEEEESTHHHH
T ss_pred CHH-H-----HHHHHHHHHHhcCCeEEEEEeCHHHHh
Confidence 111 1 112234455556889999999998764
No 50
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.85 E-value=0.022 Score=57.49 Aligned_cols=93 Identities=14% Similarity=0.141 Sum_probs=52.6
Q ss_pred cCCc--ceeeecCCCCCccHHHHHHHHHhcCC--CeEEEEEEecCChHHHHHHHHHHhh-cCCCCcEEEEEeCCCCCHHh
Q psy2894 160 GKGQ--RELIIGDRQTGKSSIAIDIIINQKNK--NVTCIYVAIGQKISSIKKTANLLEK-YGAMPYTIIVAATASDSASM 234 (515)
Q Consensus 160 grGq--r~~I~g~~g~GKt~l~~~~i~~~~~~--~~~~V~~~iGer~~ev~~~~~~l~~-~~~~~~t~vv~~t~~~~~~~ 234 (515)
..|. .++|.|++|+|||+++ ..+++.... +..++|+-+.... ...+++..+.. -+. . ......+...
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~-~~l~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~~l~~---~---~~~~~~~~~~ 111 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTL-RKLWELYKDKTTARFVYINGFIYR-NFTAIIGEIARSLNI---P---FPRRGLSRDE 111 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHH-HHHHHHHTTSCCCEEEEEETTTCC-SHHHHHHHHHHHTTC---C---CCSSCCCHHH
T ss_pred CCCCCCeEEEECCCCCCHHHHH-HHHHHHHhhhcCeeEEEEeCccCC-CHHHHHHHHHHHhCc---c---CCCCCCCHHH
Confidence 3445 7999999999999995 777765433 4567777765433 23344444322 111 0 0001111111
Q ss_pred hHHHHhhhhhhHHHHHHcCCcEEEEEechhHH
Q psy2894 235 QFISAYSGCTIGEYFRDHGKDALVVYDDLSKQ 266 (515)
Q Consensus 235 r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~ 266 (515)
.. -.+.+++...+..++|++|++...
T Consensus 112 -~~-----~~l~~~l~~~~~~~vlilDE~~~l 137 (389)
T 1fnn_A 112 -FL-----ALLVEHLRERDLYMFLVLDDAFNL 137 (389)
T ss_dssp -HH-----HHHHHHHHHTTCCEEEEEETGGGS
T ss_pred -HH-----HHHHHHHhhcCCeEEEEEECcccc
Confidence 11 123344555788999999998875
No 51
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.76 E-value=0.0092 Score=59.86 Aligned_cols=95 Identities=17% Similarity=0.235 Sum_probs=54.0
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHhcCC----CeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhh
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQKNK----NVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQ 235 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~~~~----~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r 235 (515)
+.++.++|.|++|+|||+|+ ..+++.... +..++|+-+.+.. ...+++..+... +... ......+....
T Consensus 43 ~~~~~vli~G~~G~GKTtl~-~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~i~~~--l~~~---~~~~~~~~~~~ 115 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVV-KFVLSKLHKKFLGKFKHVYINTRQID-TPYRVLADLLES--LDVK---VPFTGLSIAEL 115 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHH-HHHHHHHHHHTCSSCEEEEEEHHHHC-SHHHHHHHHTTT--TSCC---CCSSSCCHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH-HHHHHHHHHHhcCCceEEEEECCCCC-CHHHHHHHHHHH--hCCC---CCCCCCCHHHH
Confidence 66889999999999999995 666664311 5566777765433 333444444321 1100 00001111111
Q ss_pred HHHHhhhhhhHHHHHHcCCcEEEEEechhHHH
Q psy2894 236 FISAYSGCTIGEYFRDHGKDALVVYDDLSKQA 267 (515)
Q Consensus 236 ~~a~~~a~~iAE~frd~G~~Vlli~Dsltr~a 267 (515)
+ -.+.+++...|+.++|++|++....
T Consensus 116 ~------~~l~~~l~~~~~~~vlilDE~~~l~ 141 (386)
T 2qby_A 116 Y------RRLVKAVRDYGSQVVIVLDEIDAFV 141 (386)
T ss_dssp H------HHHHHHHHTCCSCEEEEEETHHHHH
T ss_pred H------HHHHHHHhccCCeEEEEEcChhhhh
Confidence 1 1223445556779999999998765
No 52
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.65 E-value=0.006 Score=64.70 Aligned_cols=64 Identities=14% Similarity=0.156 Sum_probs=51.5
Q ss_pred ccccccccccccccc-ccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHH
Q psy2894 144 EPLQTGIKAIDSIVP-IGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKK 207 (515)
Q Consensus 144 epl~TGik~ID~l~p-igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~ 207 (515)
.-+.||+..+|-++. +-+|+-+.|.|+||+|||+++++...+....+..|+|+..-+..+++..
T Consensus 178 ~gi~TG~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ql~~ 242 (444)
T 3bgw_A 178 TGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIK 242 (444)
T ss_dssp CSBCCSCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTHHHH
T ss_pred CCcCCCcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHH
Confidence 468899999999884 7799999999999999999998887776544666788877766665543
No 53
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.56 E-value=0.0034 Score=58.73 Aligned_cols=48 Identities=15% Similarity=0.247 Sum_probs=31.5
Q ss_pred ccccccccccCCcceeeecCCCCCccHHHHHHHHHhc-CCCeEEEEEEec
Q psy2894 151 KAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQK-NKNVTCIYVAIG 199 (515)
Q Consensus 151 k~ID~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~-~~~~~~V~~~iG 199 (515)
+.+..+...++++.++|.|++|+|||+++ ..+++.. ..+..++|+-+.
T Consensus 41 ~~l~~~~~~~~~~~~ll~G~~G~GKT~la-~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 41 GALKSAASGDGVQAIYLWGPVKSGRTHLI-HAACARANELERRSFYIPLG 89 (242)
T ss_dssp HHHHHHHHTCSCSEEEEECSTTSSHHHHH-HHHHHHHHHTTCCEEEEEGG
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHH-HHHHHHHHHcCCeEEEEEHH
Confidence 33444444457899999999999999995 6666542 223344555543
No 54
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.36 E-value=0.022 Score=58.23 Aligned_cols=54 Identities=9% Similarity=0.078 Sum_probs=39.2
Q ss_pred Cccccccccccccccc-cccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEe
Q psy2894 142 VSEPLQTGIKAIDSIV-PIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAI 198 (515)
Q Consensus 142 ~~epl~TGik~ID~l~-pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~i 198 (515)
+...+.||+..+|-++ -+-+|.-++|.|+||+|||+|++....+ .+. .|+|+..
T Consensus 102 i~~~i~TGi~~LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~~-~G~--~VlyIs~ 156 (331)
T 2vhj_A 102 LTGELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEA-LGG--KDKYATV 156 (331)
T ss_dssp SSTTCCSBCCEEEEETTEEEESEEEEEECSCSSSHHHHHHHHHHH-HHT--TSCCEEE
T ss_pred hhhccccCcHHHHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHHh-CCC--CEEEEEe
Confidence 4455779999999987 3336777899999999999998665444 222 3456665
No 55
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.23 E-value=0.01 Score=54.06 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=25.7
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHhcCCC
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKN 190 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~ 190 (515)
|.++.+|+.++|+|++|+||||| +..++...+.+
T Consensus 3 m~~i~~g~~i~l~G~~GsGKSTl-~~~La~~~~~g 36 (191)
T 1zp6_A 3 MTDDLGGNILLLSGHPGSGKSTI-AEALANLPGVP 36 (191)
T ss_dssp ---CCTTEEEEEEECTTSCHHHH-HHHHHTCSSSC
T ss_pred ccCCCCCeEEEEECCCCCCHHHH-HHHHHhccCCC
Confidence 56788999999999999999999 47777653333
No 56
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.06 E-value=0.0069 Score=56.75 Aligned_cols=86 Identities=13% Similarity=0.207 Sum_probs=46.1
Q ss_pred eeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCC-hHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHHHhhhh
Q psy2894 165 ELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQK-ISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFISAYSGC 243 (515)
Q Consensus 165 ~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer-~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a~~~a~ 243 (515)
++|+|++|+|||++| ..++.. +..++|++.++. ..|..+-+...+..-.-...+ +-.+.
T Consensus 2 ilV~Gg~~SGKS~~A-~~la~~---~~~~~yiaT~~~~d~e~~~rI~~h~~~R~~~w~t-iE~p~--------------- 61 (180)
T 1c9k_A 2 ILVTGGARSGKSRHA-EALIGD---APQVLYIATSQILDDEMAARIQHHKDGRPAHWRT-AECWR--------------- 61 (180)
T ss_dssp EEEEECTTSSHHHHH-HHHHCS---CSSEEEEECCCC------CHHHHHHHTSCTTEEE-ECCSS---------------
T ss_pred EEEECCCCCcHHHHH-HHHHhc---CCCeEEEecCCCCCHHHHHHHHHHHhcCCCCcEE-EEcHh---------------
Confidence 689999999999997 444433 334799999886 344444444433221112211 21111
Q ss_pred hhHHHHHHc-CCcEEEEEechhHHHHHH
Q psy2894 244 TIGEYFRDH-GKDALVVYDDLSKQAVAY 270 (515)
Q Consensus 244 ~iAE~frd~-G~~Vlli~Dsltr~a~A~ 270 (515)
.+++.+.+. ...-++++|++|-|....
T Consensus 62 ~l~~~l~~~~~~~~~VLvDclt~wl~n~ 89 (180)
T 1c9k_A 62 HLDTLITADLAPDDAILLECITTMVTNL 89 (180)
T ss_dssp CGGGTSCTTSCTTCEEEEECHHHHHHHH
T ss_pred hHHHHHHhhcccCCeEEEcCHHHHHHHH
Confidence 122222221 111379999999998654
No 57
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.01 E-value=0.029 Score=49.83 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=21.1
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+..++|.|++|+|||+++ ..+++.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~-~~~~~~ 66 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIV-EGLAQR 66 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHH-HHHHHH
T ss_pred CCCCceEEECCCCCCHHHHH-HHHHHH
Confidence 55678999999999999995 666654
No 58
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.80 E-value=0.012 Score=53.49 Aligned_cols=39 Identities=15% Similarity=0.275 Sum_probs=27.7
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHHhc--CCCeEEEEEE
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIINQK--NKNVTCIYVA 197 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~~~--~~~~~~V~~~ 197 (515)
.+.+|+.++|+|++|+|||||+ ..|++.. ..+..++|+-
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~-~~i~~~~~~~~g~~~~~~~ 74 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLA-VATLKAIYEKKGIRGYFFD 74 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHH-HHHHHHHHHHSCCCCCEEE
T ss_pred cccCCCEEEEECCCCCCHHHHH-HHHHHHHHHHcCCeEEEEE
Confidence 4567999999999999999995 6666643 3343345543
No 59
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.77 E-value=0.025 Score=51.47 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.6
Q ss_pred ccccCCcceeeecCCCCCccHHHHH
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAID 181 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~ 181 (515)
+.+.+|+.++|+|++|+|||||+ .
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~-~ 27 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFA-K 27 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHH-H
T ss_pred ccCCCCEEEEEECCCCCCHHHHH-H
Confidence 46789999999999999999995 5
No 60
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.74 E-value=0.026 Score=56.20 Aligned_cols=38 Identities=21% Similarity=0.259 Sum_probs=27.3
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHhc-CCCeEEEEEEec
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQK-NKNVTCIYVAIG 199 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~~-~~~~~~V~~~iG 199 (515)
.+.-++|.|++|||||+|+ ..+++.. ..+..++|+-+.
T Consensus 36 ~~~~lll~G~~GtGKT~la-~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLL-QAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp SCSSEEEECSSSSSHHHHH-HHHHHHHHHTTCCEEEEEHH
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHHHCCCEEEEEEHH
Confidence 5678999999999999995 7777653 113345666543
No 61
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.49 E-value=0.02 Score=61.69 Aligned_cols=55 Identities=24% Similarity=0.404 Sum_probs=40.0
Q ss_pred cccccccccccccc--cccCCcceeeecCCCCCccHHHHHHHHHh-c--CCCeEEEEEEecCC
Q psy2894 144 EPLQTGIKAIDSIV--PIGKGQRELIIGDRQTGKSSIAIDIIINQ-K--NKNVTCIYVAIGQK 201 (515)
Q Consensus 144 epl~TGik~ID~l~--pigrGqr~~I~g~~g~GKt~l~~~~i~~~-~--~~~~~~V~~~iGer 201 (515)
+.+.||+.++|.+. .+-+|+..+|+|++|+|||||+...+++. . +.+ +||+. |+.
T Consensus 19 ~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g--~i~v~-g~~ 78 (525)
T 1tf7_A 19 AKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEP--GVFVT-FEE 78 (525)
T ss_dssp CEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCC--EEEEE-SSS
T ss_pred ccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCC--EEEEE-EeC
Confidence 56789999998764 68899999999999999999963322332 1 333 56665 544
No 62
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.46 E-value=0.028 Score=57.10 Aligned_cols=89 Identities=8% Similarity=0.035 Sum_probs=55.0
Q ss_pred ccCCcceeeecCCCCCccHHHHHHHHHhcC--------CCeEEEEEEecC---ChHHHHHHHHHHhhcCCCCcEEEEEeC
Q psy2894 159 IGKGQRELIIGDRQTGKSSIAIDIIINQKN--------KNVTCIYVAIGQ---KISSIKKTANLLEKYGAMPYTIIVAAT 227 (515)
Q Consensus 159 igrGqr~~I~g~~g~GKt~l~~~~i~~~~~--------~~~~~V~~~iGe---r~~ev~~~~~~l~~~~~~~~t~vv~~t 227 (515)
-++|..+.|.|+||||||+++ ..++++-. .++.+|++-|=. .......+++.+.... . +
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v-~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~---~------~ 111 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLV-NDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKEN---L------C 111 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHH-HHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC-----------
T ss_pred CCCCCeEEEECCCCCCHHHHH-HHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCC---C------C
Confidence 478999999999999999994 66666421 145667766433 2234555566664321 0 1
Q ss_pred CCCCHHhhHHHHhhhhhhHHHHHH----cCCcEEEEEechhHHH
Q psy2894 228 ASDSASMQFISAYSGCTIGEYFRD----HGKDALVVYDDLSKQA 267 (515)
Q Consensus 228 ~~~~~~~r~~a~~~a~~iAE~frd----~G~~Vlli~Dsltr~a 267 (515)
... + .-.+-++|.. .+..+++++|.+-++.
T Consensus 112 ~~~-~---------~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 112 GDI-S---------LEALNFYITNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp CCC-C---------HHHHHHHHHHSCGGGSCEEEEEEECCSSSC
T ss_pred chH-H---------HHHHHHHHHHhhhccCCceEEEEecHHHhh
Confidence 111 1 1233455653 4778999999998876
No 63
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.27 E-value=0.28 Score=49.61 Aligned_cols=46 Identities=13% Similarity=0.092 Sum_probs=30.1
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh-cCCCeEEEEEEecCChH
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ-KNKNVTCIYVAIGQKIS 203 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~-~~~~~~~V~~~iGer~~ 203 (515)
+.+.+|+.++|+|+.|+||||++ ..++.. +..+-.+.++.+.-+..
T Consensus 100 ~~~~~~~vI~ivG~~G~GKTT~~-~~LA~~l~~~g~kVllid~D~~r~ 146 (320)
T 1zu4_A 100 FKENRLNIFMLVGVNGTGKTTSL-AKMANYYAELGYKVLIAAADTFRA 146 (320)
T ss_dssp CCTTSCEEEEEESSTTSSHHHHH-HHHHHHHHHTTCCEEEEECCCSCH
T ss_pred ccCCCCeEEEEECCCCCCHHHHH-HHHHHHHHHCCCeEEEEeCCCcch
Confidence 35688999999999999999996 444332 22233345566655443
No 64
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.14 E-value=0.054 Score=49.72 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=19.0
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
-++|.|++|+|||+++ ..+++..
T Consensus 47 ~~ll~G~~G~GKT~l~-~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA-RLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHh
Confidence 5899999999999995 6776653
No 65
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.14 E-value=0.022 Score=53.22 Aligned_cols=29 Identities=21% Similarity=0.428 Sum_probs=23.1
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
++-+|+.++|+|++|+||||| +.+|....
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL-l~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV-VRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH-HHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHH-HHHHHhhC
Confidence 789999999999999999999 68877653
No 66
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.97 E-value=0.026 Score=52.38 Aligned_cols=41 Identities=20% Similarity=0.261 Sum_probs=22.4
Q ss_pred cccccccccccccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 146 LQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 146 l~TGik~ID~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
++|+--..+.|++..+|+.++|+|++|+||||++ ..++..-
T Consensus 13 ~~~~~~~~~~~m~~~~g~~i~l~G~~GsGKSTl~-~~L~~~~ 53 (200)
T 4eun_A 13 LGTENLYFQSMMTGEPTRHVVVMGVSGSGKTTIA-HGVADET 53 (200)
T ss_dssp ---------------CCCEEEEECCTTSCHHHHH-HHHHHHH
T ss_pred cCchhhHHHhhhcCCCCcEEEEECCCCCCHHHHH-HHHHHhh
Confidence 5566667777888889999999999999999994 7776544
No 67
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.94 E-value=0.06 Score=47.80 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=20.9
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+..++|.|++|+|||+++ ..+++.
T Consensus 41 ~~~~~vll~G~~G~GKT~la-~~~~~~ 66 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIV-EGLAIK 66 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHH-HHHHHH
T ss_pred CCCCceEEECCCCCCHHHHH-HHHHHH
Confidence 45677999999999999995 566654
No 68
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.94 E-value=0.025 Score=53.59 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=23.3
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.+-+|+.++|+|++|+||||| +.+|....
T Consensus 18 l~i~~G~~~~lvGpsGsGKSTL-l~~L~g~~ 47 (218)
T 1z6g_A 18 GSMNNIYPLVICGPSGVGKGTL-IKKLLNEF 47 (218)
T ss_dssp ----CCCCEEEECSTTSSHHHH-HHHHHHHS
T ss_pred eecCCCCEEEEECCCCCCHHHH-HHHHHhhC
Confidence 4677999999999999999999 68887654
No 69
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.87 E-value=0.34 Score=46.62 Aligned_cols=31 Identities=19% Similarity=0.167 Sum_probs=24.5
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhcC
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQKN 188 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~ 188 (515)
.+..+|..+.|.|++|+||||++ ..+...-+
T Consensus 27 ~~~~~~~~i~l~G~~GsGKSTla-~~L~~~l~ 57 (253)
T 2p5t_B 27 KSSKQPIAILLGGQSGAGKTTIH-RIKQKEFQ 57 (253)
T ss_dssp CCCSSCEEEEEESCGGGTTHHHH-HHHHHHTT
T ss_pred CcccCCeEEEEECCCCCCHHHHH-HHHHHhcC
Confidence 46677889999999999999995 66665433
No 70
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.83 E-value=0.25 Score=52.44 Aligned_cols=52 Identities=13% Similarity=0.097 Sum_probs=32.7
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHH-hcCCCeEEEEEEecCChHHHHHHHHHH
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIIN-QKNKNVTCIYVAIGQKISSIKKTANLL 212 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~-~~~~~~~~V~~~iGer~~ev~~~~~~l 212 (515)
+++..+++.|++|+||||++ ..+++ -+..+..+.++.++-......+-+..+
T Consensus 98 ~~p~vIlivG~~G~GKTTt~-~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~ 150 (443)
T 3dm5_A 98 EKPTILLMVGIQGSGKTTTV-AKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQL 150 (443)
T ss_dssp SSSEEEEEECCTTSSHHHHH-HHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHH
T ss_pred CCCeEEEEECcCCCCHHHHH-HHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHH
Confidence 35778999999999999996 34433 233344455666665544444444443
No 71
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.82 E-value=0.04 Score=59.31 Aligned_cols=60 Identities=17% Similarity=0.217 Sum_probs=42.4
Q ss_pred cccccccccccccc--cccCCcceeeecCCCCCccHHHHHHHHH-hcCCCeEEEEEEecCChHH
Q psy2894 144 EPLQTGIKAIDSIV--PIGKGQRELIIGDRQTGKSSIAIDIIIN-QKNKNVTCIYVAIGQKISS 204 (515)
Q Consensus 144 epl~TGik~ID~l~--pigrGqr~~I~g~~g~GKt~l~~~~i~~-~~~~~~~~V~~~iGer~~e 204 (515)
+.+.||+.-+|.++ .+-+|+.++|.|++|+|||||+ .+++. ....+-.|+|+.-.+....
T Consensus 261 ~~l~~g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl-~~l~g~~~~~G~~vi~~~~ee~~~~ 323 (525)
T 1tf7_A 261 VRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLV-SRFVENACANKERAILFAYEESRAQ 323 (525)
T ss_dssp CEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHH-HHHHHHHHTTTCCEEEEESSSCHHH
T ss_pred ceeecChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHH-HHHHHHHHhCCCCEEEEEEeCCHHH
Confidence 45678988888664 7889999999999999999996 44443 2323334666665555443
No 72
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.79 E-value=0.029 Score=51.50 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=22.9
Q ss_pred ccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 159 IGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 159 igrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+-+|+.++|+|++|+||||| +.++...
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl-~~~L~~~ 30 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSL-VRALVKA 30 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHH-HHHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHH-HHHHHhh
Confidence 45799999999999999999 5777765
No 73
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.75 E-value=0.046 Score=48.92 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.2
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+|+.++|+|++|+|||+| +..+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL-~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL-LQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHH-HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHHH
Confidence 899999999999999999 5777764
No 74
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.65 E-value=0.062 Score=53.58 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=22.4
Q ss_pred cceeeecCCCCCccHHHHHHHHHhcCCCe
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQKNKNV 191 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~~~~~~ 191 (515)
..++|.|++|||||++| ..+++..+..+
T Consensus 56 ~~vll~G~~GtGKT~la-~~ia~~~~~~~ 83 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA-NIISYEMSANI 83 (338)
T ss_dssp CCEEEECSTTSSHHHHH-HHHHHHTTCCE
T ss_pred CeEEEECcCCCCHHHHH-HHHHHHhCCCe
Confidence 46999999999999995 77777655554
No 75
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.60 E-value=0.099 Score=55.04 Aligned_cols=37 Identities=19% Similarity=0.253 Sum_probs=27.2
Q ss_pred CcceeeecCCCCCccHHHHHHHHHhc---CCCeEEEEEEec
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQK---NKNVTCIYVAIG 199 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~~---~~~~~~V~~~iG 199 (515)
+.-++|.|++|+|||+|+ ..|++.. ..+..++|+-+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa-~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL-QSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp SCCEEEECSSSSSHHHHH-HHHHHHHHHHCCSSCEEEEEHH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHHhCCCCeEEEeeHH
Confidence 678999999999999995 7777643 335555666544
No 76
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.58 E-value=0.23 Score=49.85 Aligned_cols=35 Identities=29% Similarity=0.347 Sum_probs=25.8
Q ss_pred CcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEE
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVA 197 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~ 197 (515)
|.-++|.|++|||||+++ ..+++....+...+.+.
T Consensus 70 ~~~vLl~GppGtGKT~la-~~la~~l~~~~~~~~~~ 104 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIA-MGMAQALGPDTPFTAIA 104 (368)
T ss_dssp TCEEEEEESTTSSHHHHH-HHHHHHHCSSCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHH-HHHHHHhcccCCccccc
Confidence 578999999999999995 77777655543334444
No 77
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.57 E-value=0.067 Score=53.90 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=28.8
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHhc--------CC-CeEEEEEEecC
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQK--------NK-NVTCIYVAIGQ 200 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~~--------~~-~~~~V~~~iGe 200 (515)
+.+..++|.|++|+|||+++ ..++++. +. +..++++-+.+
T Consensus 43 ~~~~~vll~G~~G~GKT~la-~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVS-KYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHH-HHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCCCcEEEECCCCCCHHHHH-HHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 44667999999999999995 6666642 11 55667777654
No 78
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.44 E-value=0.51 Score=49.83 Aligned_cols=52 Identities=15% Similarity=0.075 Sum_probs=32.1
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHH-hcCCCeEEEEEEecCChHHHHHHHHHH
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIIN-QKNKNVTCIYVAIGQKISSIKKTANLL 212 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~-~~~~~~~~V~~~iGer~~ev~~~~~~l 212 (515)
+++..+++.|++|+||||++ ..++. -+..+..+.++.+.-......+-+..+
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~-~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~ 147 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTA-GKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQL 147 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHH-HHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH-HHHHHHHHHcCCeEEEEecCccchhHHHHHHHH
Confidence 46888999999999999996 44433 222333455566665444444444443
No 79
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.25 E-value=0.03 Score=54.16 Aligned_cols=29 Identities=24% Similarity=0.483 Sum_probs=25.9
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+-+|+.++|+|++|+||||| +..|+..
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 54 (237)
T 2cbz_A 26 FSIPEGALVAVVGQVGCGKSSL-LSALLAE 54 (237)
T ss_dssp EEECTTCEEEEECSTTSSHHHH-HHHHTTC
T ss_pred EEECCCCEEEEECCCCCCHHHH-HHHHhcC
Confidence 5788999999999999999999 6888764
No 80
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.20 E-value=0.029 Score=54.12 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=28.9
Q ss_pred cccccc-ccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 151 KAIDSI-VPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 151 k~ID~l-~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
.+++.+ +.+.+|+.++|+|++|+||||| +.+|...-
T Consensus 19 ~~L~~isl~i~~Ge~~~iiG~nGsGKSTL-l~~l~Gl~ 55 (235)
T 3tif_A 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTM-LNIIGCLD 55 (235)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHH-HHHHTTSS
T ss_pred eeEEeeeEEEcCCCEEEEECCCCCcHHHH-HHHHhcCC
Confidence 344433 5889999999999999999999 68877643
No 81
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.14 E-value=0.024 Score=52.12 Aligned_cols=33 Identities=27% Similarity=0.443 Sum_probs=27.5
Q ss_pred ccccccccccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 151 KAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 151 k~ID~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
.+++. +|+.+|.+++|+|++|+||||| +..+..
T Consensus 16 ~~l~~-~~~~~~~~v~lvG~~g~GKSTL-l~~l~g 48 (210)
T 1pui_A 16 PDIRH-LPSDTGIEVAFAGRSNAGKSSA-LNTLTN 48 (210)
T ss_dssp SSGGG-SSCSCSEEEEEEECTTSSHHHH-HTTTCC
T ss_pred CCHhH-CCCCCCcEEEEECCCCCCHHHH-HHHHhC
Confidence 45666 8999999999999999999999 465543
No 82
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.10 E-value=0.042 Score=49.91 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=25.2
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+.++|+|+.|+||||| +..|+..
T Consensus 28 l~i~~Ge~v~L~G~nGaGKTTL-lr~l~g~ 56 (158)
T 1htw_A 28 LHTEKAIMVYLNGDLGAGKTTL-TRGMLQG 56 (158)
T ss_dssp HCCSSCEEEEEECSTTSSHHHH-HHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHH-HHHHHHh
Confidence 4678999999999999999999 5777764
No 83
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.02 E-value=0.046 Score=51.01 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=22.7
Q ss_pred ccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 159 IGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 159 igrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
..+|+.++|+|++|+|||||+ ..|...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~-~~l~~~ 45 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLS-NPLAAA 45 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHH-HHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH-HHHHHH
Confidence 478999999999999999994 666543
No 84
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.99 E-value=0.048 Score=50.04 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=23.2
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
.+.+|..++|+|++|+||||+ +..+...-
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl-~~~L~~~~ 30 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTV-RKRIFEDP 30 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHH-HHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHH-HHHHHHhh
Confidence 356899999999999999999 47777653
No 85
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=92.97 E-value=0.055 Score=53.27 Aligned_cols=30 Identities=23% Similarity=0.343 Sum_probs=24.0
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHHhcCCC
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIINQKNKN 190 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~ 190 (515)
.+.+| ++++|++|||||+| +..|++..+.+
T Consensus 42 ~~~~G--vlL~Gp~GtGKTtL-akala~~~~~~ 71 (274)
T 2x8a_A 42 VTPAG--VLLAGPPGCGKTLL-AKAVANESGLN 71 (274)
T ss_dssp CCCSE--EEEESSTTSCHHHH-HHHHHHHTTCE
T ss_pred CCCCe--EEEECCCCCcHHHH-HHHHHHHcCCC
Confidence 44566 99999999999999 58888765554
No 86
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.91 E-value=0.034 Score=54.84 Aligned_cols=35 Identities=26% Similarity=0.508 Sum_probs=28.6
Q ss_pred cccccc-ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 151 KAIDSI-VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 151 k~ID~l-~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.+++.+ +.+.+|+.++|+|++|+||||| +.+|+..
T Consensus 25 ~vL~~vsl~i~~Ge~~~liG~nGsGKSTL-l~~l~Gl 60 (266)
T 4g1u_C 25 ALINDVSLHIASGEMVAIIGPNGAGKSTL-LRLLTGY 60 (266)
T ss_dssp EEEEEEEEEEETTCEEEEECCTTSCHHHH-HHHHTSS
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHH-HHHHhcC
Confidence 345443 5889999999999999999999 6887764
No 87
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.86 E-value=0.036 Score=54.42 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=26.2
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.+.+|+..+|+|++|+||||| +.+|+..-
T Consensus 27 l~i~~Ge~~~liG~nGsGKSTL-lk~l~Gl~ 56 (262)
T 1b0u_A 27 LQARAGDVISIIGSSGSGKSTF-LRCINFLE 56 (262)
T ss_dssp EEECTTCEEEEECCTTSSHHHH-HHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhcCC
Confidence 5788999999999999999999 68877643
No 88
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=92.86 E-value=0.12 Score=50.90 Aligned_cols=33 Identities=27% Similarity=0.452 Sum_probs=25.5
Q ss_pred CcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEec
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIG 199 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iG 199 (515)
|+-+.|.|++|+|||+| +..+.++.+ ++|+-+.
T Consensus 31 ~~~v~i~G~~G~GKT~L-l~~~~~~~~----~~~~~~~ 63 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSL-LRAFLNERP----GILIDCR 63 (350)
T ss_dssp CSEEEEECCTTSSHHHH-HHHHHHHSS----EEEEEHH
T ss_pred CCeEEEECCCcCCHHHH-HHHHHHHcC----cEEEEee
Confidence 57899999999999999 477776642 5666654
No 89
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.81 E-value=0.41 Score=47.78 Aligned_cols=46 Identities=17% Similarity=0.103 Sum_probs=28.6
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHh-cCCCeEEEEEEecCChHHHH
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQ-KNKNVTCIYVAIGQKISSIK 206 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~-~~~~~~~V~~~iGer~~ev~ 206 (515)
.+|..+++.|++|+||||++ ..++.. +..+-.+.++...-+.....
T Consensus 96 ~~~~vi~i~G~~G~GKTT~~-~~la~~~~~~g~~v~l~~~D~~r~~a~ 142 (297)
T 1j8m_F 96 KIPYVIMLVGVQGTGKTTTA-GKLAYFYKKKGFKVGLVGADVYRPAAL 142 (297)
T ss_dssp SSSEEEEEECSSCSSTTHHH-HHHHHHHHHTTCCEEEEECCCSSSHHH
T ss_pred CCCeEEEEECCCCCCHHHHH-HHHHHHHHHCCCeEEEEecCCCCHHHH
Confidence 35889999999999999996 444332 22233345566654443333
No 90
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.78 E-value=0.033 Score=53.31 Aligned_cols=30 Identities=30% Similarity=0.419 Sum_probs=26.2
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.+-+|+..+|+|++|+||||| +.+|+..-
T Consensus 25 l~i~~Ge~~~iiG~nGsGKSTL-l~~l~Gl~ 54 (224)
T 2pcj_A 25 LSVKKGEFVSIIGASGSGKSTL-LYILGLLD 54 (224)
T ss_dssp EEEETTCEEEEEECTTSCHHHH-HHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhcCC
Confidence 5788999999999999999999 68877643
No 91
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.77 E-value=0.04 Score=55.64 Aligned_cols=32 Identities=28% Similarity=0.256 Sum_probs=27.0
Q ss_pred ccccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 155 SIVPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 155 ~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
.-+.|-+|++++|+|++|+||||| +..|...-
T Consensus 119 vsl~i~~Ge~vaIvGpsGsGKSTL-l~lL~gl~ 150 (305)
T 2v9p_A 119 WLKGIPKKNCLAFIGPPNTGKSML-CNSLIHFL 150 (305)
T ss_dssp HHHTCTTCSEEEEECSSSSSHHHH-HHHHHHHH
T ss_pred ceEEecCCCEEEEECCCCCcHHHH-HHHHhhhc
Confidence 346889999999999999999999 57777654
No 92
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.77 E-value=0.047 Score=50.84 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=20.6
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+|+.++|+|++|+||||| +..+...
T Consensus 3 ~g~~i~lvGpsGaGKSTL-l~~L~~~ 27 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL-LKKLFQE 27 (198)
T ss_dssp --CCEEEECCTTSSHHHH-HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHhh
Confidence 689999999999999999 6877764
No 93
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=92.76 E-value=0.15 Score=53.94 Aligned_cols=31 Identities=29% Similarity=0.499 Sum_probs=23.9
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHhcCCCe
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQKNKNV 191 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~ 191 (515)
++...++|.|++|||||+++ ..|++..+..+
T Consensus 48 ~~~~~vLL~GppGtGKTtlA-r~ia~~~~~~f 78 (447)
T 3pvs_A 48 GHLHSMILWGPPGTGKTTLA-EVIARYANADV 78 (447)
T ss_dssp TCCCEEEEECSTTSSHHHHH-HHHHHHTTCEE
T ss_pred CCCcEEEEECCCCCcHHHHH-HHHHHHhCCCe
Confidence 44456899999999999995 77887665443
No 94
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.73 E-value=0.039 Score=54.14 Aligned_cols=30 Identities=27% Similarity=0.356 Sum_probs=26.5
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.+.+|+..+|+|++|+||||| +.+|+...
T Consensus 36 l~i~~Gei~~l~G~NGsGKSTL-lk~l~Gl~ 65 (256)
T 1vpl_A 36 FEIEEGEIFGLIGPNGAGKTTT-LRIISTLI 65 (256)
T ss_dssp EEECTTCEEEEECCTTSSHHHH-HHHHTTSS
T ss_pred EEEcCCcEEEEECCCCCCHHHH-HHHHhcCC
Confidence 5789999999999999999999 68887653
No 95
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.72 E-value=0.036 Score=54.97 Aligned_cols=34 Identities=26% Similarity=0.455 Sum_probs=27.9
Q ss_pred ccccc-ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 152 AIDSI-VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 152 ~ID~l-~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+++.+ +.+.+|+.++|+|++|+||||| +.+|...
T Consensus 23 ~L~~isl~i~~Ge~~~iiGpnGsGKSTL-l~~l~Gl 57 (275)
T 3gfo_A 23 ALKGINMNIKRGEVTAILGGNGVGKSTL-FQNFNGI 57 (275)
T ss_dssp EEEEEEEEEETTSEEEEECCTTSSHHHH-HHHHTTS
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHH-HHHHHcC
Confidence 44433 5889999999999999999999 6877764
No 96
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.70 E-value=0.039 Score=54.36 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=26.6
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
=+.+.+|+.++|+|++|+||||| +.+|...-
T Consensus 44 sl~i~~Gei~~liG~NGsGKSTL-lk~l~Gl~ 74 (263)
T 2olj_A 44 NVHIREGEVVVVIGPSGSGKSTF-LRCLNLLE 74 (263)
T ss_dssp EEEECTTCEEEEECCTTSSHHHH-HHHHTTSS
T ss_pred EEEEcCCCEEEEEcCCCCcHHHH-HHHHHcCC
Confidence 35788999999999999999999 68877643
No 97
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.70 E-value=0.036 Score=53.61 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=25.8
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+-+|+.++|+|++|+||||| +..|...
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 51 (243)
T 1mv5_A 23 FEAQPNSIIAFAGPSGGGKSTI-FSLLERF 51 (243)
T ss_dssp EEECTTEEEEEECCTTSSHHHH-HHHHTTS
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhcC
Confidence 5788999999999999999999 6887764
No 98
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.70 E-value=0.039 Score=54.07 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=25.8
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+-+|+.++|+|++|+||||| +.+|...
T Consensus 41 l~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl 69 (260)
T 2ghi_A 41 FFIPSGTTCALVGHTGSGKSTI-AKLLYRF 69 (260)
T ss_dssp EEECTTCEEEEECSTTSSHHHH-HHHHTTS
T ss_pred EEECCCCEEEEECCCCCCHHHH-HHHHhcc
Confidence 5788999999999999999999 6887764
No 99
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.68 E-value=0.075 Score=50.85 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=24.4
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHHhcCCCe
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNV 191 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~ 191 (515)
.+.+| ++|+|++|||||+| +..|++......
T Consensus 47 ~~~~g--~ll~G~~G~GKTtl-~~~i~~~~~~~~ 77 (254)
T 1ixz_A 47 RIPKG--VLLVGPPGVGKTHL-ARAVAGEARVPF 77 (254)
T ss_dssp CCCSE--EEEECCTTSSHHHH-HHHHHHHTTCCE
T ss_pred CCCCe--EEEECCCCCCHHHH-HHHHHHHhCCCE
Confidence 44566 99999999999999 588887665443
No 100
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.62 E-value=0.094 Score=55.00 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=23.3
Q ss_pred eeeecCCCCCccHHHHHHHHHhcCCCeE
Q psy2894 165 ELIIGDRQTGKSSIAIDIIINQKNKNVT 192 (515)
Q Consensus 165 ~~I~g~~g~GKt~l~~~~i~~~~~~~~~ 192 (515)
+++.||||||||.|| ..+++..+..++
T Consensus 185 vLL~GPPGTGKTllA-kAiA~e~~~~f~ 211 (405)
T 4b4t_J 185 VILYGPPGTGKTLLA-RAVAHHTDCKFI 211 (405)
T ss_dssp EEEESCSSSSHHHHH-HHHHHHHTCEEE
T ss_pred eEEeCCCCCCHHHHH-HHHHHhhCCCce
Confidence 899999999999995 889988776653
No 101
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.61 E-value=0.38 Score=46.47 Aligned_cols=35 Identities=26% Similarity=0.334 Sum_probs=25.8
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEE
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVA 197 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~ 197 (515)
..+..++|.|++|||||+++ ..+++..+.. ++++.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la-~~la~~~~~~--~~~v~ 83 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLA-KAVATETNAT--FIRVV 83 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHH-HHHHHHTTCE--EEEEE
T ss_pred CCCCeEEEECCCCCcHHHHH-HHHHHHhCCC--EEEEe
Confidence 34566999999999999995 7888765544 34444
No 102
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.57 E-value=0.045 Score=51.81 Aligned_cols=26 Identities=12% Similarity=0.204 Sum_probs=18.9
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHH
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIII 184 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~ 184 (515)
.+-+|+.++|+|++|+||||| +.++.
T Consensus 23 ~v~~G~ii~l~Gp~GsGKSTl-~~~L~ 48 (231)
T 3lnc_A 23 LKSVGVILVLSSPSGCGKTTV-ANKLL 48 (231)
T ss_dssp CEECCCEEEEECSCC----CH-HHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHH-HHHHH
Confidence 466899999999999999999 57777
No 103
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.56 E-value=0.092 Score=55.46 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=23.2
Q ss_pred eeeecCCCCCccHHHHHHHHHhcCCCeE
Q psy2894 165 ELIIGDRQTGKSSIAIDIIINQKNKNVT 192 (515)
Q Consensus 165 ~~I~g~~g~GKt~l~~~~i~~~~~~~~~ 192 (515)
+++.||||||||.|| ..+++..+..++
T Consensus 209 iLL~GPPGtGKT~la-kAiA~~~~~~~~ 235 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLV-KAVANSTKAAFI 235 (428)
T ss_dssp EEEESCTTTTHHHHH-HHHHHHHTCEEE
T ss_pred EEEECCCCCCHHHHH-HHHHHHhCCCeE
Confidence 899999999999995 889988776653
No 104
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.52 E-value=0.042 Score=53.65 Aligned_cols=30 Identities=37% Similarity=0.656 Sum_probs=26.4
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.+-+|+..+|+|++|+||||| +.+|+..-
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTL-lk~l~Gl~ 57 (257)
T 1g6h_A 28 ISVNKGDVTLIIGPNGSGKSTL-INVITGFL 57 (257)
T ss_dssp CEEETTCEEEEECSTTSSHHHH-HHHHTTSS
T ss_pred EEEeCCCEEEEECCCCCCHHHH-HHHHhCCC
Confidence 5788999999999999999999 68887643
No 105
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.49 E-value=0.047 Score=53.13 Aligned_cols=29 Identities=24% Similarity=0.471 Sum_probs=26.1
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+.++|+|++|+||||| +..|+..
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTL-lk~l~Gl 52 (250)
T 2d2e_A 24 LVVPKGEVHALMGPNGAGKSTL-GKILAGD 52 (250)
T ss_dssp EEEETTCEEEEECSTTSSHHHH-HHHHHTC
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 5789999999999999999999 6888763
No 106
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.45 E-value=0.068 Score=51.94 Aligned_cols=30 Identities=27% Similarity=0.403 Sum_probs=26.4
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.+-+|+.++|+|++|+||||| +.+|....
T Consensus 30 l~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~ 59 (247)
T 2ff7_A 30 LSIKQGEVIGIVGRSGSGKSTL-TKLIQRFY 59 (247)
T ss_dssp EEEETTCEEEEECSTTSSHHHH-HHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhcCC
Confidence 5788999999999999999999 68887653
No 107
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.44 E-value=0.044 Score=53.82 Aligned_cols=30 Identities=27% Similarity=0.526 Sum_probs=26.4
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.+.+|+.++|+|++|+||||| +.+|+...
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTL-l~~i~Gl~ 57 (266)
T 2yz2_A 28 LVINEGECLLVAGNTGSGKSTL-LQIVAGLI 57 (266)
T ss_dssp EEECTTCEEEEECSTTSSHHHH-HHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCcHHHH-HHHHhCCC
Confidence 5889999999999999999999 68877643
No 108
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.41 E-value=0.05 Score=53.50 Aligned_cols=29 Identities=21% Similarity=0.442 Sum_probs=26.0
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+-+|+.++|+|++|+||||| +.+|+..
T Consensus 41 l~i~~Ge~~~l~G~NGsGKSTL-lk~l~Gl 69 (267)
T 2zu0_C 41 LDVHPGEVHAIMGPNGSGKSTL-SATLAGR 69 (267)
T ss_dssp EEECTTCEEEEECCTTSSHHHH-HHHHHTC
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 5789999999999999999999 6888764
No 109
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.36 E-value=0.071 Score=51.11 Aligned_cols=30 Identities=27% Similarity=0.472 Sum_probs=26.4
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.+-+|+.++|+|++|+||||| +..|+..-
T Consensus 29 l~i~~Ge~~~i~G~nGsGKSTL-l~~l~Gl~ 58 (229)
T 2pze_A 29 FKIERGQLLAVAGSTGAGKTSL-LMMIMGEL 58 (229)
T ss_dssp EEEETTCEEEEECCTTSSHHHH-HHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhCCC
Confidence 5788999999999999999999 68887653
No 110
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.33 E-value=0.074 Score=50.74 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=26.6
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhcC
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQKN 188 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~ 188 (515)
+.+-+|+.++|+|++|+||||| +.+|.....
T Consensus 30 l~i~~Ge~~~iiG~NGsGKSTL-lk~l~Gl~~ 60 (214)
T 1sgw_A 30 MTIEKGNVVNFHGPNGIGKTTL-LKTISTYLK 60 (214)
T ss_dssp EEEETTCCEEEECCTTSSHHHH-HHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhcCCC
Confidence 4788999999999999999999 688876543
No 111
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.33 E-value=0.043 Score=53.60 Aligned_cols=30 Identities=23% Similarity=0.561 Sum_probs=26.3
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.+.+|+.++|+|++|+||||| +..|+..-
T Consensus 26 l~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~ 55 (253)
T 2nq2_C 26 FDLNKGDILAVLGQNGCGKSTL-LDLLLGIH 55 (253)
T ss_dssp EEEETTCEEEEECCSSSSHHHH-HHHHTTSS
T ss_pred EEECCCCEEEEECCCCCCHHHH-HHHHhCCC
Confidence 5788999999999999999999 68887643
No 112
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.26 E-value=0.065 Score=48.88 Aligned_cols=26 Identities=15% Similarity=0.401 Sum_probs=22.2
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+|.-++|+|++|+||||| +..+....
T Consensus 4 ~g~~i~i~GpsGsGKSTL-~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI-KNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHH-HHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHhhC
Confidence 588999999999999999 57777643
No 113
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.15 E-value=0.046 Score=52.82 Aligned_cols=30 Identities=23% Similarity=0.413 Sum_probs=26.2
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.+-+|+.++|+|++|+||||| +..|+...
T Consensus 27 l~i~~Ge~~~l~G~nGsGKSTL-l~~l~Gl~ 56 (240)
T 1ji0_A 27 LKVPRGQIVTLIGANGAGKTTT-LSAIAGLV 56 (240)
T ss_dssp EEEETTCEEEEECSTTSSHHHH-HHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhCCC
Confidence 5788999999999999999999 68877643
No 114
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.11 E-value=0.046 Score=54.25 Aligned_cols=30 Identities=23% Similarity=0.468 Sum_probs=26.4
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.+.+|+..+|+|++|+||||| +.+|+..-
T Consensus 42 l~i~~Ge~~~liG~NGsGKSTL-lk~l~Gl~ 71 (279)
T 2ihy_A 42 WQIAKGDKWILYGLNGAGKTTL-LNILNAYE 71 (279)
T ss_dssp EEEETTCEEEEECCTTSSHHHH-HHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCcHHHH-HHHHhCCC
Confidence 5788999999999999999999 68887643
No 115
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.06 E-value=0.047 Score=53.26 Aligned_cols=30 Identities=17% Similarity=0.317 Sum_probs=26.2
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.+.+|+.++|+|++|+||||| +.+|+...
T Consensus 21 l~i~~Ge~~~liG~NGsGKSTL-lk~l~Gl~ 50 (249)
T 2qi9_C 21 GEVRAGEILHLVGPNGAGKSTL-LARMAGMT 50 (249)
T ss_dssp EEEETTCEEEEECCTTSSHHHH-HHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCcHHHH-HHHHhCCC
Confidence 5788999999999999999999 68877643
No 116
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.05 E-value=0.1 Score=48.30 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=26.2
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEE
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIY 195 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~ 195 (515)
+|+-..|.|++|+||||+++..+.+....+..+++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~ 36 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAV 36 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 47788999999999999988887775444433333
No 117
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.02 E-value=0.064 Score=50.86 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=23.1
Q ss_pred ccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 159 IGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 159 igrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+-+|+.++|+|++|+||||| +.+|+..
T Consensus 19 i~~Ge~~~liG~nGsGKSTL-l~~l~Gl 45 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYL-AMAKAVQ 45 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHH-HHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH-HHHHhcC
Confidence 37899999999999999999 5776653
No 118
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.99 E-value=0.37 Score=48.41 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=29.1
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHHh-cCCCeEEEEEEecCCh
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIINQ-KNKNVTCIYVAIGQKI 202 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~~-~~~~~~~V~~~iGer~ 202 (515)
...+|..++|+|++|+||||++ ..++.. +..+-.+.++...-+.
T Consensus 100 ~~~~~~vi~ivG~~GsGKTTl~-~~LA~~l~~~g~kV~lv~~D~~r 144 (306)
T 1vma_A 100 PPEPPFVIMVVGVNGTGKTTSC-GKLAKMFVDEGKSVVLAAADTFR 144 (306)
T ss_dssp CSSSCEEEEEECCTTSSHHHHH-HHHHHHHHHTTCCEEEEEECTTC
T ss_pred cCCCCeEEEEEcCCCChHHHHH-HHHHHHHHhcCCEEEEEcccccc
Confidence 3578899999999999999995 444432 2223334555665443
No 119
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=91.94 E-value=0.21 Score=53.67 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=26.1
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHh------cCCCeEEEEEEecCC
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQ------KNKNVTCIYVAIGQK 201 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~------~~~~~~~V~~~iGer 201 (515)
+.+.-++|.|++|+|||+|| ..+++. .-.+. ++++.+++.
T Consensus 145 ~~~~~v~I~G~~GiGKTtLa-~~~~~~~~~~~~~f~~~-v~wv~~~~~ 190 (591)
T 1z6t_A 145 GEPGWVTIHGMAGCGKSVLA-AEAVRDHSLLEGCFPGG-VHWVSVGKQ 190 (591)
T ss_dssp TSCEEEEEECCTTSSHHHHH-HHHHCCHHHHHHHCTTC-EEEEEEESC
T ss_pred CCCceEEEEcCCCCCHHHHH-HHHHhchhHHHhhCCCc-eEEEECCCC
Confidence 34567899999999999997 444432 11232 456666655
No 120
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.92 E-value=0.064 Score=52.64 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=27.1
Q ss_pred cccccccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 152 AIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 152 ~ID~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+++.+. +-+|+.++|+|++|+||||+ +..|+..
T Consensus 16 vl~~i~-i~~g~~v~i~Gp~GsGKSTl-l~~l~g~ 48 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVTGPTGSGKSTT-IASMIDY 48 (261)
T ss_dssp HHHHGG-GCSSEEEEEECSTTCSHHHH-HHHHHHH
T ss_pred HHHHHh-hCCCCEEEEECCCCccHHHH-HHHHHHh
Confidence 444455 88999999999999999999 5777764
No 121
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=91.90 E-value=0.1 Score=50.77 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=24.3
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHHhcCCCe
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNV 191 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~ 191 (515)
.+.+| ++|+|++|||||+| +..|++......
T Consensus 71 ~~~~g--vll~Gp~GtGKTtl-~~~i~~~~~~~~ 101 (278)
T 1iy2_A 71 RIPKG--VLLVGPPGVGKTHL-ARAVAGEARVPF 101 (278)
T ss_dssp CCCCE--EEEECCTTSSHHHH-HHHHHHHTTCCE
T ss_pred CCCCe--EEEECCCcChHHHH-HHHHHHHcCCCE
Confidence 44566 99999999999999 588887665443
No 122
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.86 E-value=0.072 Score=51.07 Aligned_cols=29 Identities=17% Similarity=0.190 Sum_probs=22.8
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|..++|.|++|+|||||+ .+|...
T Consensus 20 l~i~~g~iigI~G~~GsGKSTl~-k~L~~~ 48 (245)
T 2jeo_A 20 FQSMRPFLIGVSGGTASGKSTVC-EKIMEL 48 (245)
T ss_dssp ---CCSEEEEEECSTTSSHHHHH-HHHHHH
T ss_pred ccCCCCEEEEEECCCCCCHHHHH-HHHHHH
Confidence 47889999999999999999994 776653
No 123
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.84 E-value=0.14 Score=54.16 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=23.1
Q ss_pred ceeeecCCCCCccHHHHHHHHHhcCCCe
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQKNKNV 191 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~~~~~ 191 (515)
-+++.||||||||.|| ..+++..+..+
T Consensus 217 GvLL~GPPGtGKTllA-kAiA~e~~~~~ 243 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLA-KAVAATIGANF 243 (437)
T ss_dssp EEEEESCTTSSHHHHH-HHHHHHHTCEE
T ss_pred eEEEECCCCCcHHHHH-HHHHHHhCCCE
Confidence 4899999999999995 88998877664
No 124
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.80 E-value=0.061 Score=55.54 Aligned_cols=35 Identities=20% Similarity=0.405 Sum_probs=29.1
Q ss_pred ccc-cccccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 151 KAI-DSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 151 k~I-D~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.++ |.=+.+.+|+..+|+|++|+||||| +.+|+..
T Consensus 18 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTL-Lr~iaGl 53 (359)
T 3fvq_A 18 PVLNDISLSLDPGEILFIIGASGCGKTTL-LRCLAGF 53 (359)
T ss_dssp EEEEEEEEEECTTCEEEEEESTTSSHHHH-HHHHHTS
T ss_pred EEEEeeEEEEcCCCEEEEECCCCchHHHH-HHHHhcC
Confidence 445 3445899999999999999999999 6888864
No 125
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.79 E-value=0.09 Score=48.02 Aligned_cols=28 Identities=39% Similarity=0.528 Sum_probs=23.0
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+..+|.+++|+|++|+||||++ ..++..
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~-~~La~~ 33 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMA-EMIAAE 33 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHH-HHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH-HHHHHh
Confidence 4567899999999999999995 666654
No 126
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.75 E-value=0.079 Score=49.46 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=20.8
Q ss_pred CcceeeecCCCCCccHHHHHHHHHh
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
|++++|+|++|+||||| +..|+..
T Consensus 1 G~~i~i~G~nG~GKTTl-l~~l~g~ 24 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTL-IHKASEV 24 (189)
T ss_dssp CCCEEEESCCSSCHHHH-HHHHHHH
T ss_pred CCEEEEECCCCChHHHH-HHHHHhh
Confidence 78999999999999999 5777653
No 127
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.72 E-value=0.15 Score=49.38 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=23.0
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHhcCCC
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQKNKN 190 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~~~~~ 190 (515)
....++|.|++|||||++| ..+++..+..
T Consensus 63 ~~~~vLl~G~~GtGKT~la-~~ia~~~~~~ 91 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALA-AKIAEESNFP 91 (272)
T ss_dssp SEEEEEEECSTTSSHHHHH-HHHHHHHTCS
T ss_pred CCeEEEEECCCCCcHHHHH-HHHHHHhCCC
Confidence 4457999999999999995 7777765444
No 128
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.71 E-value=0.59 Score=42.16 Aligned_cols=25 Identities=24% Similarity=0.221 Sum_probs=19.7
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+...++|.|++|+|||+++ ..+++.
T Consensus 37 ~~~~~ll~G~~G~GKT~l~-~~l~~~ 61 (226)
T 2chg_A 37 NIPHLLFSGPPGTGKTATA-IALARD 61 (226)
T ss_dssp CCCCEEEECSTTSSHHHHH-HHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH-HHHHHH
Confidence 3445999999999999995 666653
No 129
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=91.62 E-value=0.29 Score=49.06 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=20.5
Q ss_pred cceeeecCCCCCccHHHHHHHHHhc
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
.-+++.|++|||||+|| ..+++..
T Consensus 46 ~~iLL~GppGtGKT~la-~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLA-KAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHH-HHHHHHT
T ss_pred ceEEEECCCCccHHHHH-HHHHHHc
Confidence 56899999999999995 7787765
No 130
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.57 E-value=0.075 Score=49.20 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=21.8
Q ss_pred ccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 159 IGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 159 igrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
..+|..++|.|++|+||||| +..|...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl-~~~l~~~ 29 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTL-AQALART 29 (211)
T ss_dssp --CCEEEEEEESTTSSHHHH-HHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHH-HHHHHHH
Confidence 46789999999999999999 4777654
No 131
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.54 E-value=0.1 Score=51.49 Aligned_cols=30 Identities=20% Similarity=0.391 Sum_probs=26.5
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.+.+|+.++|+|++|+||||| +.+|....
T Consensus 40 l~i~~Ge~~~i~G~nGsGKSTL-lk~l~Gl~ 69 (271)
T 2ixe_A 40 FTLYPGKVTALVGPNGSGKSTV-AALLQNLY 69 (271)
T ss_dssp EEECTTCEEEEECSTTSSHHHH-HHHHTTSS
T ss_pred EEECCCCEEEEECCCCCCHHHH-HHHHhcCC
Confidence 5789999999999999999999 68887653
No 132
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.52 E-value=0.16 Score=54.58 Aligned_cols=29 Identities=24% Similarity=0.229 Sum_probs=24.9
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+.++|+|++|+||||| +..|+..
T Consensus 288 l~i~~GeVI~LVGpNGSGKTTL-l~~LAgl 316 (503)
T 2yhs_A 288 VEGKAPFVILMVGVNGVGKTTT-IGKLARQ 316 (503)
T ss_dssp CCSCTTEEEEEECCTTSSHHHH-HHHHHHH
T ss_pred eeccCCeEEEEECCCcccHHHH-HHHHHHH
Confidence 4688999999999999999999 5666653
No 133
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.47 E-value=0.073 Score=54.89 Aligned_cols=33 Identities=12% Similarity=0.235 Sum_probs=27.9
Q ss_pred cccccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 154 DSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 154 D~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
|.=+.+.+|+..+|+|++|+||||| +.+|+.--
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTL-Lr~iaGl~ 53 (359)
T 2yyz_A 21 GVSFEVKDGEFVALLGPSGCGKTTT-LLMLAGIY 53 (359)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHH-HHHHHTSS
T ss_pred eeEEEEcCCCEEEEEcCCCchHHHH-HHHHHCCC
Confidence 3445888999999999999999999 68888643
No 134
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=91.47 E-value=0.036 Score=56.03 Aligned_cols=32 Identities=25% Similarity=0.458 Sum_probs=28.5
Q ss_pred ccccccccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 153 IDSIVPIGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 153 ID~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
+|.|.++-+|+..+|+|++|+||||| +..|..
T Consensus 164 ~~~L~~~~~G~~~~lvG~sG~GKSTL-ln~L~g 195 (307)
T 1t9h_A 164 LADIIPHFQDKTTVFAGQSGVGKSSL-LNAISP 195 (307)
T ss_dssp CTTTGGGGTTSEEEEEESHHHHHHHH-HHHHCC
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHH-HHHhcc
Confidence 57788999999999999999999999 677764
No 135
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=91.43 E-value=0.26 Score=50.11 Aligned_cols=28 Identities=29% Similarity=0.390 Sum_probs=22.5
Q ss_pred cceeeecCCCCCccHHHHHHHHHhcCCCe
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQKNKNV 191 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~~~~~~ 191 (515)
..++|.|++|||||+|| ..+++..+..+
T Consensus 85 ~~iLL~GppGtGKT~la-~ala~~~~~~~ 112 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLA-KAVATEANSTF 112 (355)
T ss_dssp CCEEEECSTTSCHHHHH-HHHHHHHTCEE
T ss_pred ceEEEECCCCCcHHHHH-HHHHHHhCCCE
Confidence 45899999999999995 78887765443
No 136
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.42 E-value=0.071 Score=54.94 Aligned_cols=33 Identities=21% Similarity=0.393 Sum_probs=27.9
Q ss_pred cccccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 154 DSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 154 D~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
|.=+.+.+|+..+|+|++|+||||| +.+|+..-
T Consensus 33 ~vsl~i~~Ge~~~llGpnGsGKSTL-Lr~iaGl~ 65 (355)
T 1z47_A 33 GVSFQIREGEMVGLLGPSGSGKTTI-LRLIAGLE 65 (355)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHH-HHHHHTSS
T ss_pred eeEEEECCCCEEEEECCCCCcHHHH-HHHHhCCC
Confidence 3445788999999999999999999 68888643
No 137
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.41 E-value=0.14 Score=54.24 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=23.6
Q ss_pred ceeeecCCCCCccHHHHHHHHHhcCCCeE
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQKNKNVT 192 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~~~~~~ 192 (515)
.+++.||||||||.|| ..+++..+..+.
T Consensus 217 GvLLyGPPGTGKTllA-kAiA~e~~~~f~ 244 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLA-RACAAQTNATFL 244 (434)
T ss_dssp EEEEESCTTSSHHHHH-HHHHHHHTCEEE
T ss_pred eeEEECcCCCCHHHHH-HHHHHHhCCCEE
Confidence 4899999999999995 889988776643
No 138
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.35 E-value=0.076 Score=54.83 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=27.5
Q ss_pred ccccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 155 SIVPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 155 ~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
.=+.+.+|+..+|+|++|+||||| +.+|+..-
T Consensus 22 vsl~i~~Ge~~~llGpnGsGKSTL-Lr~iaGl~ 53 (362)
T 2it1_A 22 INLKIKDGEFMALLGPSGSGKSTL-LYTIAGIY 53 (362)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHH-HHHHHTSS
T ss_pred eEEEECCCCEEEEECCCCchHHHH-HHHHhcCC
Confidence 335788999999999999999999 68888653
No 139
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.35 E-value=0.066 Score=53.52 Aligned_cols=29 Identities=28% Similarity=0.512 Sum_probs=25.9
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+.++|+|++|+||||| +.+|...
T Consensus 59 l~i~~Ge~~~i~G~NGsGKSTL-lk~l~Gl 87 (290)
T 2bbs_A 59 FKIERGQLLAVAGSTGAGKTSL-LMMIMGE 87 (290)
T ss_dssp EEECTTCEEEEEESTTSSHHHH-HHHHTTS
T ss_pred EEEcCCCEEEEECCCCCcHHHH-HHHHhcC
Confidence 5788999999999999999999 6888764
No 140
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.33 E-value=0.077 Score=55.01 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=27.5
Q ss_pred ccccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 155 SIVPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 155 ~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
.=+.+.+|+..+|+|++|+||||| +.+|+.--
T Consensus 30 vsl~i~~Ge~~~llGpnGsGKSTL-Lr~iaGl~ 61 (372)
T 1v43_A 30 LNLTIKDGEFLVLLGPSGCGKTTT-LRMIAGLE 61 (372)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHH-HHHHHTSS
T ss_pred eEEEECCCCEEEEECCCCChHHHH-HHHHHcCC
Confidence 345889999999999999999999 68888643
No 141
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.27 E-value=0.078 Score=55.17 Aligned_cols=35 Identities=20% Similarity=0.347 Sum_probs=28.8
Q ss_pred ccccc-cccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 151 KAIDS-IVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 151 k~ID~-l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.++|. =+.+.+|+..+|+|++|+||||| +.+|+.-
T Consensus 17 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTL-Lr~iaGl 52 (381)
T 3rlf_A 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTL-LRMIAGL 52 (381)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHH-HHHHHTS
T ss_pred EEEeeeEEEECCCCEEEEEcCCCchHHHH-HHHHHcC
Confidence 44443 35889999999999999999999 6888864
No 142
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.26 E-value=0.16 Score=53.71 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=23.4
Q ss_pred eeeecCCCCCccHHHHHHHHHhcCCCeE
Q psy2894 165 ELIIGDRQTGKSSIAIDIIINQKNKNVT 192 (515)
Q Consensus 165 ~~I~g~~g~GKt~l~~~~i~~~~~~~~~ 192 (515)
+++.||||||||.|| ..+++..+..++
T Consensus 219 vLLyGPPGTGKTlLA-kAiA~e~~~~fi 245 (437)
T 4b4t_I 219 VILYGAPGTGKTLLA-KAVANQTSATFL 245 (437)
T ss_dssp EEEESSTTTTHHHHH-HHHHHHHTCEEE
T ss_pred CceECCCCchHHHHH-HHHHHHhCCCEE
Confidence 999999999999995 889988776653
No 143
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=91.25 E-value=0.1 Score=50.27 Aligned_cols=126 Identities=16% Similarity=0.217 Sum_probs=68.5
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEE--EecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHH
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYV--AIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFI 237 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~--~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~ 237 (515)
.+|+-+.|.|++|+||||+++..+.+....+..++|+ ..+.| .+ ..+. ..-|.--..+-+ .+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r-~~-~~i~---srlG~~~~~~~~-~~---------- 73 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR-SI-RNIQ---SRTGTSLPSVEV-ES---------- 73 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG-GC-SSCC---CCCCCSSCCEEE-SS----------
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch-HH-HHHH---HhcCCCcccccc-CC----------
Confidence 4688889999999999999999888876555444444 45444 21 1111 111211111111 11
Q ss_pred HHhhhhhhHHHHHH---cCCcEEEEEechhHHH-HHHHHHHHhcCC-CC----CC-CCCCCchhhhhhHHHHHhhccc
Q psy2894 238 SAYSGCTIGEYFRD---HGKDALVVYDDLSKQA-VAYRQISLLLKR-PP----GR-EAYPGDIFYLHSRLLERSARVN 305 (515)
Q Consensus 238 a~~~a~~iAE~frd---~G~~Vlli~Dsltr~a-~A~reisl~l~~-pp----~~-~gypg~vf~~~~rl~ERag~~~ 305 (515)
...+-+++++ .+.--+|++|++--+- +..+++..+..+ .| |+ ..|-+..|.-.++|++.|-.+.
T Consensus 74 ----~~~i~~~i~~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~ 147 (223)
T 2b8t_A 74 ----APEILNYIMSNSFNDETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKIT 147 (223)
T ss_dssp ----THHHHHHHHSTTSCTTCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEE
T ss_pred ----HHHHHHHHHHHhhCCCCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEe
Confidence 1223344443 2445588889976432 222333332221 11 22 3577777888899999887663
No 144
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.17 E-value=1.1 Score=39.72 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=20.0
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
|++++|++|+|||+| +..+.+..
T Consensus 25 ~i~v~G~~~~GKSsl-i~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSL-LNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHH-HHHHHTSC
T ss_pred EEEEECCCCCCHHHH-HHHHHcCc
Confidence 799999999999999 68887653
No 145
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.07 E-value=0.08 Score=54.82 Aligned_cols=33 Identities=15% Similarity=0.399 Sum_probs=28.0
Q ss_pred cccccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 154 DSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 154 D~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
|.=+.+.+|+..+|+|++|+||||| +.+|+.--
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTL-Lr~iaGl~ 53 (372)
T 1g29_1 21 EMSLEVKDGEFMILLGPSGCGKTTT-LRMIAGLE 53 (372)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHH-HHHHHTSS
T ss_pred eeEEEEcCCCEEEEECCCCcHHHHH-HHHHHcCC
Confidence 3446888999999999999999999 68888643
No 146
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.98 E-value=0.11 Score=49.68 Aligned_cols=29 Identities=21% Similarity=0.433 Sum_probs=23.2
Q ss_pred ccCCcceeeecCCCCCccHHHHHHHHHhcC
Q psy2894 159 IGKGQRELIIGDRQTGKSSIAIDIIINQKN 188 (515)
Q Consensus 159 igrGqr~~I~g~~g~GKt~l~~~~i~~~~~ 188 (515)
+-+|+-++|+||+|+||||| +..+.....
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL-lk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL-IQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH-HHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHH-HHHHhccCC
Confidence 45799999999999999999 688776543
No 147
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=90.97 E-value=0.99 Score=47.47 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=29.4
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHh-cCCCeEEEEEEecCChHHHHH
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQ-KNKNVTCIYVAIGQKISSIKK 207 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~-~~~~~~~V~~~iGer~~ev~~ 207 (515)
+|+.+++.|+.|+||||++ ..++.. +..+-.+.++.+.-...-..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~-~~LA~~l~~~g~~Vllvd~D~~r~aa~~ 143 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTA-AKLALYYKGKGRRPLLVAADTQRPAARE 143 (425)
T ss_dssp SSEEEEEECCTTSSHHHHH-HHHHHHHHTTTCCEEEEECCSSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHHHHcCCeEEEeeccccCchhHH
Confidence 7889999999999999996 444432 222333455566554443333
No 148
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.96 E-value=0.078 Score=52.17 Aligned_cols=29 Identities=21% Similarity=0.534 Sum_probs=25.2
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.+. |+.++|+|++|+||||| +.+|+...
T Consensus 26 l~i~-Ge~~~i~G~NGsGKSTL-lk~l~Gl~ 54 (263)
T 2pjz_A 26 LEVN-GEKVIILGPNGSGKTTL-LRAISGLL 54 (263)
T ss_dssp EEEC-SSEEEEECCTTSSHHHH-HHHHTTSS
T ss_pred EEEC-CEEEEEECCCCCCHHHH-HHHHhCCC
Confidence 4677 99999999999999999 68887654
No 149
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=90.95 E-value=0.29 Score=52.74 Aligned_cols=48 Identities=19% Similarity=0.122 Sum_probs=30.6
Q ss_pred CcceeeecCCCCCccHHHHHHHHH---hc---CCCeEEEEEEecCCh-HHHHHHHHH
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIIN---QK---NKNVTCIYVAIGQKI-SSIKKTANL 211 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~---~~---~~~~~~V~~~iGer~-~ev~~~~~~ 211 (515)
..-++|.|..|+|||||| ..+.| .. .-+. ++++.+.+.. ..+.++...
T Consensus 152 ~~vv~I~G~gGvGKTtLA-~~v~~~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIA-SQALSKSDQLIGINYDS-IVWLKDSGTAPKSTFDLFTD 206 (549)
T ss_dssp SEEEEEECSTTSSHHHHH-HHHHHHCSSTBTTTBSE-EEEEECCCCSTTHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHH-HHHHHhhhHHHhccCCc-EEEEEECCCCCCCHHHHHHH
Confidence 356899999999999997 56665 21 2233 4667777653 234444444
No 150
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=90.92 E-value=0.12 Score=48.90 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=23.4
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+|.-+|.-+.|.||+|+||||| +..++..
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL-~~~L~~~ 42 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHI-KNALLSQ 42 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHH-HHHHHHH
T ss_pred CCCCCCCEEEEECcCCCCHHHH-HHHHHhh
Confidence 4556899999999999999999 5777754
No 151
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=90.87 E-value=0.32 Score=46.45 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=20.9
Q ss_pred eeeecCCCCCccHHHHHHHHHhcCCC
Q psy2894 165 ELIIGDRQTGKSSIAIDIIINQKNKN 190 (515)
Q Consensus 165 ~~I~g~~g~GKt~l~~~~i~~~~~~~ 190 (515)
++|.|++|||||+++ ..+++..+..
T Consensus 48 vll~G~~GtGKT~la-~~la~~~~~~ 72 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLA-KAIAGEAKVP 72 (257)
T ss_dssp EEEECCTTSCHHHHH-HHHHHHHTCC
T ss_pred EEEECcCCCCHHHHH-HHHHHHcCCC
Confidence 999999999999995 7888765544
No 152
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.85 E-value=0.091 Score=54.39 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=30.0
Q ss_pred ccccccc-ccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 150 IKAIDSI-VPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 150 ik~ID~l-~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.++|.+ +.|.+|+..+|+|++|+||||| +.+|..--
T Consensus 41 ~~aL~~vsl~i~~Gei~~IiGpnGaGKSTL-lr~i~GL~ 78 (366)
T 3tui_C 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTL-IRCVNLLE 78 (366)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHH-HHHHHTSS
T ss_pred eEEEEeeEEEEcCCCEEEEEcCCCchHHHH-HHHHhcCC
Confidence 4456544 5899999999999999999999 68777643
No 153
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.79 E-value=0.12 Score=47.78 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=21.8
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
.+.+|..+.|+|++|+||||++ ..++..-
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~-~~La~~l 49 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLG-KAFARKL 49 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHH-HHHHHHH
T ss_pred ecCCCCEEEEEcCCCCCHHHHH-HHHHHHc
Confidence 4568999999999999999995 6665443
No 154
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.78 E-value=0.089 Score=54.88 Aligned_cols=35 Identities=26% Similarity=0.522 Sum_probs=28.6
Q ss_pred cccccc-ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 151 KAIDSI-VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 151 k~ID~l-~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.+++.+ +.|-+|+.++|+|++|+||||| +.+|+..
T Consensus 35 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTL-Lr~iaGl 70 (390)
T 3gd7_A 35 AILENISFSISPGQRVGLLGRTGSGKSTL-LSAFLRL 70 (390)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHH-HHHHHTC
T ss_pred EEeeceeEEEcCCCEEEEECCCCChHHHH-HHHHhCC
Confidence 344443 4899999999999999999999 6888753
No 155
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=90.75 E-value=0.17 Score=50.88 Aligned_cols=28 Identities=25% Similarity=0.464 Sum_probs=23.0
Q ss_pred cceeeecCCCCCccHHHHHHHHHhcCCCe
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQKNKNV 191 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~~~~~~ 191 (515)
..++|.|++|+||||| +..|++.-+..+
T Consensus 52 ~~~ll~Gp~G~GKTTL-a~~ia~~l~~~~ 79 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL-AHIIASELQTNI 79 (334)
T ss_dssp CCEEEESSTTSSHHHH-HHHHHHHHTCCE
T ss_pred CeEEEECCCCCcHHHH-HHHHHHHhCCCE
Confidence 6799999999999999 588887655543
No 156
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.74 E-value=0.41 Score=41.89 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=21.4
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
.+..++|.|++|||||++| ..|.+..
T Consensus 23 ~~~~vll~G~~GtGKt~lA-~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGA-RYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHH-HHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHH-HHHHHhC
Confidence 4567999999999999996 7777653
No 157
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=90.68 E-value=0.11 Score=47.40 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=20.3
Q ss_pred CcceeeecCCCCCccHHHHHHHHHh
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
|.-++|+||+|+||||| +.++...
T Consensus 1 ~~ii~l~GpsGaGKsTl-~~~L~~~ 24 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTL-LKKLFAE 24 (186)
T ss_dssp CCCEEEESSSSSSHHHH-HHHHHHH
T ss_pred CCEEEEECCCCCCHHHH-HHHHHhh
Confidence 45689999999999999 6888764
No 158
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.56 E-value=0.067 Score=54.94 Aligned_cols=31 Identities=19% Similarity=0.414 Sum_probs=27.0
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
=+.+.+|+..+|+|++|+||||| +.+|+..-
T Consensus 20 sl~i~~Ge~~~llGpnGsGKSTL-Lr~iaGl~ 50 (348)
T 3d31_A 20 SLKVESGEYFVILGPTGAGKTLF-LELIAGFH 50 (348)
T ss_dssp EEEECTTCEEEEECCCTHHHHHH-HHHHHTSS
T ss_pred EEEEcCCCEEEEECCCCccHHHH-HHHHHcCC
Confidence 35789999999999999999999 68888643
No 159
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.50 E-value=0.12 Score=47.83 Aligned_cols=30 Identities=20% Similarity=0.144 Sum_probs=24.4
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.-.+.+|..++|.|++|+||||++ ..+...
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~-~~L~~~ 44 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLA-KNLQKH 44 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHH-HHHHTT
T ss_pred cccCCCCeEEEEECCCCCCHHHHH-HHHHHh
Confidence 346778999999999999999995 666643
No 160
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=90.48 E-value=0.25 Score=48.83 Aligned_cols=30 Identities=27% Similarity=0.326 Sum_probs=24.3
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHhcCCC
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQKNKN 190 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~~~~~ 190 (515)
..+..++|.|++|||||+|| ..+++..+..
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la-~ala~~~~~~ 76 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLA-KAIANECQAN 76 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHH-HHHHHHTTCE
T ss_pred CCCceEEEECCCCcCHHHHH-HHHHHHhCCC
Confidence 35677999999999999995 8888776544
No 161
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.47 E-value=0.077 Score=53.02 Aligned_cols=33 Identities=30% Similarity=0.406 Sum_probs=29.4
Q ss_pred ccccccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 153 IDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 153 ID~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
||.+..+-+|+..+++|++|+||||| +.+|. ..
T Consensus 156 i~~L~~~l~G~i~~l~G~sG~GKSTL-ln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLEGFICILAGPSGVGKSSI-LSRLT-GE 188 (302)
T ss_dssp HHHHHHHTTTCEEEEECSTTSSHHHH-HHHHH-SC
T ss_pred HHHHHhhccCcEEEEECCCCCCHHHH-HHHHH-Hh
Confidence 67788888999999999999999999 68887 54
No 162
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=90.43 E-value=0.53 Score=50.28 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=20.6
Q ss_pred eeeecCCCCCccHHHHHHHHHhcCCC
Q psy2894 165 ELIIGDRQTGKSSIAIDIIINQKNKN 190 (515)
Q Consensus 165 ~~I~g~~g~GKt~l~~~~i~~~~~~~ 190 (515)
++|.|++|||||+|+ ..+++..+..
T Consensus 52 vLL~GppGtGKT~La-raia~~~~~~ 76 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLA-RAVAGEANVP 76 (476)
T ss_dssp EEEECCTTSSHHHHH-HHHHHHHTCC
T ss_pred EEEECCCCCCHHHHH-HHHHHHcCCC
Confidence 999999999999995 7787765443
No 163
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.38 E-value=0.12 Score=52.60 Aligned_cols=35 Identities=31% Similarity=0.378 Sum_probs=27.8
Q ss_pred cccccc-ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 151 KAIDSI-VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 151 k~ID~l-~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.+++.+ +.+.+|+.++|+|++|+||||| +..+...
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTL-l~~l~g~ 78 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTT-IDALGSL 78 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHH-HHHHHHH
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHH-HHHHHHh
Confidence 344433 5689999999999999999999 6777753
No 164
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.34 E-value=0.13 Score=51.89 Aligned_cols=27 Identities=19% Similarity=0.074 Sum_probs=23.4
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
.+.+|+.++|.|++|+|||||+ ..|..
T Consensus 86 ~~~~g~ivgI~G~sGsGKSTL~-~~L~g 112 (312)
T 3aez_A 86 DRPVPFIIGVAGSVAVGKSTTA-RVLQA 112 (312)
T ss_dssp SSCCCEEEEEECCTTSCHHHHH-HHHHH
T ss_pred CCCCCEEEEEECCCCchHHHHH-HHHHh
Confidence 4789999999999999999994 66654
No 165
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=90.30 E-value=0.12 Score=47.49 Aligned_cols=23 Identities=22% Similarity=0.553 Sum_probs=19.6
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++|+|++|+||||| +..|+..-
T Consensus 2 ~i~l~G~nGsGKTTL-l~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL-VKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHHHHh
Confidence 689999999999999 57777654
No 166
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.27 E-value=0.24 Score=52.88 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=23.6
Q ss_pred ceeeecCCCCCccHHHHHHHHHhcCCCeE
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQKNKNVT 192 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~~~~~~ 192 (515)
-+++.||||||||.|| ..|++..+..++
T Consensus 245 GILLyGPPGTGKTlLA-kAiA~e~~~~fi 272 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCA-RAVANRTDATFI 272 (467)
T ss_dssp EEEECSCTTSSHHHHH-HHHHHHHTCEEE
T ss_pred ceEeeCCCCCcHHHHH-HHHHhccCCCeE
Confidence 4899999999999995 889988776643
No 167
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.12 E-value=1.2 Score=44.30 Aligned_cols=43 Identities=19% Similarity=0.204 Sum_probs=27.4
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHh-cCCCeEEEEEEecCChHH
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQ-KNKNVTCIYVAIGQKISS 204 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~-~~~~~~~V~~~iGer~~e 204 (515)
+|+.++++|+.|+||||++ ..++.. +..+-.+.++...-+...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~-~~la~~~~~~~~~v~l~~~d~~~~~ 140 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTA-AKLALYYKGKGRRPLLVAADTQRPA 140 (295)
T ss_dssp SSEEEEEECCTTTTHHHHH-HHHHHHHHHTTCCEEEEECCSSCHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHHHHcCCeEEEecCCcccHh
Confidence 8999999999999999996 333331 222223444555544433
No 168
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=90.08 E-value=0.15 Score=45.45 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=20.7
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.|..++|.|++|+||||++ ..++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~-~~La~~ 27 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIG-RQLAQQ 27 (173)
T ss_dssp CCCCEEEECCTTSCHHHHH-HHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH-HHHHHH
Confidence 3678999999999999994 666654
No 169
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=90.03 E-value=0.37 Score=46.93 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=23.0
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHhcCCC
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQKNKN 190 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~~~~~ 190 (515)
.+..++|.|++|||||++| ..+++..+..
T Consensus 53 ~~~~vll~Gp~GtGKT~la-~~la~~~~~~ 81 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLA-RAVATECSAT 81 (297)
T ss_dssp CCSEEEEESSSSSCHHHHH-HHHHHHTTCE
T ss_pred CCCeEEEECcCCCCHHHHH-HHHHHHhCCC
Confidence 3567999999999999995 7777765433
No 170
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.84 E-value=0.068 Score=54.97 Aligned_cols=31 Identities=29% Similarity=0.460 Sum_probs=27.0
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
=+.+.+|+..+|+|++|+||||| +.+|+..-
T Consensus 25 sl~i~~Ge~~~llGpnGsGKSTL-Lr~iaGl~ 55 (353)
T 1oxx_K 25 NINIENGERFGILGPSGAGKTTF-MRIIAGLD 55 (353)
T ss_dssp EEEECTTCEEEEECSCHHHHHHH-HHHHHTSS
T ss_pred EEEECCCCEEEEECCCCCcHHHH-HHHHhCCC
Confidence 35788999999999999999999 68888643
No 171
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.83 E-value=0.14 Score=52.59 Aligned_cols=33 Identities=9% Similarity=0.298 Sum_probs=27.6
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhcCCC
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKN 190 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~ 190 (515)
+.+-+|+.++|.|++|+||||| +..|+..-..+
T Consensus 170 ~~i~~G~~i~ivG~sGsGKSTl-l~~l~~~~~~~ 202 (361)
T 2gza_A 170 RAVQLERVIVVAGETGSGKTTL-MKALMQEIPFD 202 (361)
T ss_dssp HHHHTTCCEEEEESSSSCHHHH-HHHHHTTSCTT
T ss_pred HHHhcCCEEEEECCCCCCHHHH-HHHHHhcCCCC
Confidence 3677999999999999999999 68888764433
No 172
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.80 E-value=0.12 Score=46.34 Aligned_cols=26 Identities=27% Similarity=0.578 Sum_probs=21.8
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+|.+++|+|++|+|||+| +..+....
T Consensus 3 ~~~ki~ivG~~g~GKStL-l~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSL-LNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHH-HHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHH-HHHHhCCC
Confidence 578999999999999999 68887653
No 173
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.79 E-value=0.12 Score=52.19 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=26.6
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.|-+|++++|+|++|+||||| +..|...-
T Consensus 75 l~i~~Ge~vaivG~sGsGKSTL-l~ll~gl~ 104 (306)
T 3nh6_A 75 FTVMPGQTLALVGPSGAGKSTI-LRLLFRFY 104 (306)
T ss_dssp EEECTTCEEEEESSSCHHHHHH-HHHHTTSS
T ss_pred EEEcCCCEEEEECCCCchHHHH-HHHHHcCC
Confidence 5889999999999999999999 68887753
No 174
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=89.74 E-value=0.16 Score=47.48 Aligned_cols=27 Identities=15% Similarity=0.359 Sum_probs=22.7
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
-+|.-++|.||+|+||||| +..++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl-~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTV-REAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHH-HHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHH-HHHHHhhC
Confidence 4688999999999999999 57777654
No 175
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=89.71 E-value=0.24 Score=54.10 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=19.6
Q ss_pred CCcceeeecCCCCCccHHHHHHHHH
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
.++-..|.|++|||||+++ ..++.
T Consensus 203 ~~~~~~I~G~pGTGKTt~i-~~l~~ 226 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTT-KAVAD 226 (574)
T ss_dssp TCSEEEEECCTTSCHHHHH-HHHHH
T ss_pred hCCEEEEEcCCCCCHHHHH-HHHHH
Confidence 4678999999999999995 55554
No 176
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.69 E-value=0.13 Score=54.69 Aligned_cols=29 Identities=31% Similarity=0.455 Sum_probs=25.4
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+-+|++++|+|++|+||||| +.+|++.
T Consensus 133 l~i~~Ge~v~IvGpnGsGKSTL-lr~L~Gl 161 (460)
T 2npi_A 133 MSNFEGPRVVIVGGSQTGKTSL-SRTLCSY 161 (460)
T ss_dssp HHSSSCCCEEEEESTTSSHHHH-HHHHHHT
T ss_pred eEeCCCCEEEEECCCCCCHHHH-HHHHhCc
Confidence 4566999999999999999999 6888875
No 177
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=89.66 E-value=0.16 Score=45.47 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=21.4
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
-+|..++|+|++|+||||++ ..+...
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~-~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVA-SEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHH-HHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHH-HHHHHh
Confidence 35889999999999999995 666554
No 178
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=89.64 E-value=0.19 Score=49.80 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=24.0
Q ss_pred eeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEec
Q psy2894 165 ELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIG 199 (515)
Q Consensus 165 ~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iG 199 (515)
+++.|+||||||+|| ..|++..+..+ +++.++
T Consensus 39 lLl~GppGtGKT~la-~aiA~~l~~~~--i~v~~~ 70 (293)
T 3t15_A 39 LGIWGGKGQGKSFQC-ELVFRKMGINP--IMMSAG 70 (293)
T ss_dssp EEEEECTTSCHHHHH-HHHHHHHTCCC--EEEEHH
T ss_pred EEEECCCCCCHHHHH-HHHHHHhCCCE--EEEeHH
Confidence 567799999999995 88888776554 445543
No 179
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=89.61 E-value=0.3 Score=53.77 Aligned_cols=51 Identities=16% Similarity=0.273 Sum_probs=36.2
Q ss_pred ceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcC
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYG 216 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~ 216 (515)
=.+|.||||||||+.+...|..-...+-.+ ..|.....-|.++.+.|...+
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~I--Lv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKV--LCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCE--EEEESSHHHHHHHHHHHHHTT
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeE--EEEcCchHHHHHHHHHHHhcC
Confidence 368999999999998655555432223222 567778888999999887654
No 180
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=89.61 E-value=0.36 Score=47.74 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=19.5
Q ss_pred cCCcceeeecC-CCCCccHHHHHHHHHhcC
Q psy2894 160 GKGQRELIIGD-RQTGKSSIAIDIIINQKN 188 (515)
Q Consensus 160 grGqr~~I~g~-~g~GKt~l~~~~i~~~~~ 188 (515)
|+-....+++| +|+|||+++ ..+++..+
T Consensus 45 ~~~~~~~L~~G~~G~GKT~la-~~la~~l~ 73 (324)
T 3u61_B 45 GKIPHIILHSPSPGTGKTTVA-KALCHDVN 73 (324)
T ss_dssp TCCCSEEEECSSTTSSHHHHH-HHHHHHTT
T ss_pred CCCCeEEEeeCcCCCCHHHHH-HHHHHHhC
Confidence 34445656655 999999995 77776654
No 181
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=89.52 E-value=0.19 Score=46.62 Aligned_cols=28 Identities=11% Similarity=0.277 Sum_probs=23.6
Q ss_pred ccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 159 IGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 159 igrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.+|.-+.|.|++|+|||||+ ..++...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~-~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI-KKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH-HHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHH-HHHHHhC
Confidence 578999999999999999994 7776654
No 182
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.49 E-value=0.15 Score=50.94 Aligned_cols=28 Identities=18% Similarity=0.061 Sum_probs=23.5
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+..+|..++|.|++|+||||| +.+|...
T Consensus 76 ~~~~g~iigI~G~~GsGKSTl-~~~L~~~ 103 (308)
T 1sq5_A 76 GQRIPYIISIAGSVAVGKSTT-ARVLQAL 103 (308)
T ss_dssp -CCCCEEEEEEECTTSSHHHH-HHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHH-HHHHHHH
Confidence 558999999999999999999 4777653
No 183
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=89.46 E-value=0.29 Score=46.25 Aligned_cols=106 Identities=10% Similarity=0.067 Sum_probs=56.2
Q ss_pred ccccccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEE--ec-CChHHHHHHHHHHh-hcCCCCcEEEEEeCCCC
Q psy2894 155 SIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVA--IG-QKISSIKKTANLLE-KYGAMPYTIIVAATASD 230 (515)
Q Consensus 155 ~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~--iG-er~~ev~~~~~~l~-~~~~~~~t~vv~~t~~~ 230 (515)
...+.-+ +.+.++++.|.||||.|+.+.++..+.+.+|.++- =| ....| .++++.|. +--.+..... . . .+
T Consensus 22 ~~~~~~~-g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE-~~~l~~L~v~~~~~g~gf~-~-~-~~ 96 (196)
T 1g5t_A 22 AQAQEER-GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGE-RNLLEPHGVEFQVMATGFT-W-E-TQ 96 (196)
T ss_dssp -----CC-CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHH-HHHHGGGTCEEEECCTTCC-C-C-GG
T ss_pred hhccccC-ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccH-HHHHHhCCcEEEEcccccc-c-C-CC
Confidence 3334434 58999999999999999999998877776554441 23 22233 23444441 0000000000 0 1 11
Q ss_pred CHHhhHHHHhhhhhhHHHHHHcCCcEEEEEechhH
Q psy2894 231 SASMQFISAYSGCTIGEYFRDHGKDALVVYDDLSK 265 (515)
Q Consensus 231 ~~~~r~~a~~~a~~iAE~frd~G~~Vlli~Dsltr 265 (515)
.......++..+...|......|.-=|||+|.++-
T Consensus 97 ~~~~~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~ 131 (196)
T 1g5t_A 97 NREADTAACMAVWQHGKRMLADPLLDMVVLDELTY 131 (196)
T ss_dssp GHHHHHHHHHHHHHHHHHHTTCTTCSEEEEETHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCc
Confidence 11223445555555555554457777888999875
No 184
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.34 E-value=0.17 Score=54.75 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=27.3
Q ss_pred cccccccccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 152 AIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 152 ~ID~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
+++.+..+.+|++.+|+|++|+||||| +.+|..
T Consensus 37 ~l~~vs~i~~Ge~~~LvG~NGaGKSTL-lk~l~G 69 (538)
T 1yqt_A 37 VLYRLPVVKEGMVVGIVGPNGTGKSTA-VKILAG 69 (538)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHH-HHHHHT
T ss_pred cccCcCcCCCCCEEEEECCCCCCHHHH-HHHHhC
Confidence 455554689999999999999999999 577765
No 185
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=89.24 E-value=0.25 Score=45.23 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=24.7
Q ss_pred cceeeecCCCCCccHHHHHHHHHhc-CCCeEEEEEEe
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQK-NKNVTCIYVAI 198 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~~-~~~~~~V~~~i 198 (515)
..++|.|++|||||+|+ ..+++.. ..+..++|+-+
T Consensus 55 ~~~~l~G~~GtGKT~la-~~i~~~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL-AAIANELAKRNVSSLIVYV 90 (202)
T ss_dssp CEEEEECSTTSSHHHHH-HHHHHHHHTTTCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHcCCeEEEEEh
Confidence 78999999999999995 6666643 23334455543
No 186
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.11 E-value=0.2 Score=45.15 Aligned_cols=34 Identities=38% Similarity=0.672 Sum_probs=25.7
Q ss_pred ccccc---cccccccCCcceeeecCCCCCccHHHHHHHH
Q psy2894 149 GIKAI---DSIVPIGKGQRELIIGDRQTGKSSIAIDIII 184 (515)
Q Consensus 149 Gik~I---D~l~pigrGqr~~I~g~~g~GKt~l~~~~i~ 184 (515)
+.+.+ +.-+.+.+| -.+|+|+.|+|||+| +++|.
T Consensus 11 nf~~~~~~~~~~~~~~g-~~~i~G~NGsGKStl-l~ai~ 47 (182)
T 3kta_A 11 GFKSYGNKKVVIPFSKG-FTAIVGANGSGKSNI-GDAIL 47 (182)
T ss_dssp SBGGGCSSCEEEECCSS-EEEEEECTTSSHHHH-HHHHH
T ss_pred CeEeecCccEEEecCCC-cEEEECCCCCCHHHH-HHHHH
Confidence 44555 344567777 889999999999999 57765
No 187
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=89.08 E-value=0.095 Score=52.24 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=29.7
Q ss_pred ccccccccCCcceeeecCCCCCccHHHHHHHHHhcC
Q psy2894 153 IDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQKN 188 (515)
Q Consensus 153 ID~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~ 188 (515)
||-++.+-+|+..+|+|++|+||||| +.+|.....
T Consensus 160 v~~lf~~l~geiv~l~G~sG~GKSTl-l~~l~g~~~ 194 (301)
T 1u0l_A 160 IEELKEYLKGKISTMAGLSGVGKSSL-LNAINPGLK 194 (301)
T ss_dssp HHHHHHHHSSSEEEEECSTTSSHHHH-HHHHSTTCC
T ss_pred HHHHHHHhcCCeEEEECCCCCcHHHH-HHHhccccc
Confidence 67778888999999999999999999 688876443
No 188
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=89.02 E-value=0.31 Score=43.54 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=21.5
Q ss_pred CcceeeecCCCCCccHHHHHHHHHhcCCC
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQKNKN 190 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~~~~~ 190 (515)
|.-+.|.|.+|+||||++ ..+...-+..
T Consensus 3 ~~~i~l~G~~GsGKST~a-~~La~~l~~~ 30 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV-RCLQSVLPEP 30 (178)
T ss_dssp CCEEEEECCTTSSHHHHH-HHHHHHSSSC
T ss_pred ceEEEEECCCCCCHHHHH-HHHHHhcCCC
Confidence 456899999999999995 6666654434
No 189
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=89.01 E-value=0.16 Score=45.74 Aligned_cols=25 Identities=24% Similarity=0.415 Sum_probs=20.8
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+|..+++.|++|+||||++ ..++..
T Consensus 3 ~g~~I~l~G~~GsGKST~~-~~La~~ 27 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQA-SRLAQE 27 (186)
T ss_dssp CEEEEEEECCTTSCHHHHH-HHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHH
Confidence 6788999999999999995 666543
No 190
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=88.91 E-value=1 Score=48.36 Aligned_cols=48 Identities=13% Similarity=0.160 Sum_probs=27.6
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHh-cCCCeEEEEEEecCChHHHHHH
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQ-KNKNVTCIYVAIGQKISSIKKT 208 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~-~~~~~~~V~~~iGer~~ev~~~ 208 (515)
.+...++|+|.+|+||||++ ..++.. +..+-.+.++.+.-......+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~-~kLA~~l~~~G~kVllVd~D~~r~aa~~q 147 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTC-SKLAYYYQRKGWKTCLICADTFRAGAFDQ 147 (504)
T ss_dssp S--EEEEEECSTTSSHHHHH-HHHHHHHHHTTCCEEEEEECCSSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH-HHHHHHHHhCCCeEEEEeccccchhHHHH
Confidence 45568999999999999996 554432 2223334455554433333333
No 191
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=88.89 E-value=0.16 Score=49.08 Aligned_cols=30 Identities=20% Similarity=0.409 Sum_probs=25.5
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
=+.+.+ +..+|+|++|+||||| +.+|+..-
T Consensus 19 sl~i~~-e~~~liG~nGsGKSTL-l~~l~Gl~ 48 (240)
T 2onk_A 19 DFEMGR-DYCVLLGPTGAGKSVF-LELIAGIV 48 (240)
T ss_dssp EEEECS-SEEEEECCTTSSHHHH-HHHHHTSS
T ss_pred EEEECC-EEEEEECCCCCCHHHH-HHHHhCCC
Confidence 357788 9999999999999999 68887653
No 192
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=88.89 E-value=0.15 Score=52.08 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=24.9
Q ss_pred cccC--CcceeeecCCCCCccHHHHHHHHHhcC
Q psy2894 158 PIGK--GQRELIIGDRQTGKSSIAIDIIINQKN 188 (515)
Q Consensus 158 pigr--Gqr~~I~g~~g~GKt~l~~~~i~~~~~ 188 (515)
++-+ |++.+|+|++|+||||| +..|+..-.
T Consensus 164 ~v~~~lg~k~~IvG~nGsGKSTL-lk~L~gl~~ 195 (365)
T 1lw7_A 164 EARPFFAKTVAILGGESSGKSVL-VNKLAAVFN 195 (365)
T ss_dssp TTGGGTCEEEEEECCTTSHHHHH-HHHHHHHTT
T ss_pred HHHHhhhCeEEEECCCCCCHHHH-HHHHHHHhC
Confidence 3466 99999999999999999 588776543
No 193
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=88.87 E-value=0.92 Score=47.75 Aligned_cols=45 Identities=13% Similarity=0.061 Sum_probs=28.3
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHhcCC-CeEEEEEEecCChHHH
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQKNK-NVTCIYVAIGQKISSI 205 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~~~~-~~~~V~~~iGer~~ev 205 (515)
+...+.++|..|+||||++......-+.. +-++.++.++-.....
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a 144 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAA 144 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccH
Confidence 34678899999999999974443332322 4445666776544333
No 194
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=88.81 E-value=0.11 Score=53.58 Aligned_cols=34 Identities=18% Similarity=0.406 Sum_probs=27.1
Q ss_pred ccccccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 153 IDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 153 ID~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
++.+...-+|+..+|+|++|+||||| +.+|....
T Consensus 206 l~~L~~~~~G~~~~lvG~sG~GKSTL-ln~L~g~~ 239 (358)
T 2rcn_A 206 LKPLEEALTGRISIFAGQSGVGKSSL-LNALLGLQ 239 (358)
T ss_dssp HHHHHHHHTTSEEEEECCTTSSHHHH-HHHHHCCS
T ss_pred HHHHHHhcCCCEEEEECCCCccHHHH-HHHHhccc
Confidence 34444556899999999999999999 68887543
No 195
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=88.75 E-value=0.19 Score=47.98 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=21.1
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
++..++|+|++|+||||+ +..|+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl-~k~La~~ 50 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTV-CQRIAQN 50 (246)
T ss_dssp CCCEEEEECCTTSSHHHH-HHHHHHH
T ss_pred CCcEEEEECCCCCCHHHH-HHHHHHH
Confidence 478999999999999999 4777743
No 196
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=88.64 E-value=1.8 Score=38.65 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=19.4
Q ss_pred CcceeeecCCCCCccHHHHHHHHHh
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+-.++|.|++|+||||++ ..++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a-~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC-ARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHH-HHHHHH
T ss_pred ceEEEEECCCCCCHHHHH-HHHHHH
Confidence 457899999999999996 556544
No 197
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=88.62 E-value=0.52 Score=46.20 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=22.4
Q ss_pred CcceeeecCCCCCccHHHHHHHHHhcCCC
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQKNKN 190 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~~~~~ 190 (515)
...++|.|++|||||++| ..+++..+..
T Consensus 38 ~~~vll~G~~GtGKT~la-~~i~~~~~~~ 65 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA-HVIAHELGVN 65 (324)
T ss_dssp CCCCEEECCTTCCCHHHH-HHHHHHHTCC
T ss_pred CCcEEEECCCCCCHHHHH-HHHHHHhCCC
Confidence 467999999999999995 7777765444
No 198
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=88.56 E-value=0.27 Score=47.89 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=20.4
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
++...++|.|++|+|||+++ ..+++.
T Consensus 36 ~~~~~~ll~G~~G~GKt~la-~~l~~~ 61 (319)
T 2chq_A 36 KNIPHLLFSGPPGTGKTATA-IALARD 61 (319)
T ss_dssp TCCCCEEEESSSSSSHHHHH-HHHHHH
T ss_pred CCCCeEEEECcCCcCHHHHH-HHHHHH
Confidence 44446999999999999995 666654
No 199
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=88.49 E-value=0.22 Score=49.84 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=24.2
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.+.+|+.++|+|+.|+||||+ +..|+..
T Consensus 96 ~~~~g~vi~lvG~nGsGKTTl-l~~Lag~ 123 (302)
T 3b9q_A 96 GFRKPAVIMIVGVNGGGKTTS-LGKLAHR 123 (302)
T ss_dssp CSSSCEEEEEECCTTSCHHHH-HHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHH-HHHHHHH
Confidence 578999999999999999999 5776653
No 200
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=88.33 E-value=0.22 Score=54.83 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=27.9
Q ss_pred cccccccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 152 AIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 152 ~ID~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.++.+..+.+|+..+|+|++|+||||| +.+|...
T Consensus 93 ~l~~l~~~~~Gei~~LvGpNGaGKSTL-LkiL~Gl 126 (608)
T 3j16_B 93 KLHRLPTPRPGQVLGLVGTNGIGKSTA-LKILAGK 126 (608)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHH-HHHHHTS
T ss_pred eecCCCCCCCCCEEEEECCCCChHHHH-HHHHhcC
Confidence 455555678999999999999999999 6877753
No 201
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=88.32 E-value=0.18 Score=45.77 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=19.5
Q ss_pred CcceeeecCCCCCccHHHHHHHHH
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
|+.++|+|++|+||||+ +..++.
T Consensus 2 g~ii~l~G~~GaGKSTl-~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTT-CKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHH-HHHHHH
T ss_pred CeEEEEECCCCCcHHHH-HHHHhc
Confidence 56789999999999999 477765
No 202
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=88.31 E-value=0.55 Score=48.07 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=25.8
Q ss_pred CcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEec
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIG 199 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iG 199 (515)
+..++|.|++|||||++| ..|++..+.. ++++-+.
T Consensus 148 ~~~vLL~GppGtGKT~la-~aia~~~~~~--~~~v~~~ 182 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA-KAVAAESNAT--FFNISAA 182 (389)
T ss_dssp CSEEEEESSTTSCHHHHH-HHHHHHTTCE--EEEECSC
T ss_pred CceEEEECCCCCCHHHHH-HHHHHhhcCc--EEEeeHH
Confidence 567999999999999995 7777765443 3445443
No 203
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=88.29 E-value=0.24 Score=49.45 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=22.1
Q ss_pred cceeeecCCCCCccHHHHHHHHHhcCCC
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQKNKN 190 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~~~~~ 190 (515)
..++|.|++|||||++| ..+++..+..
T Consensus 52 ~~vLl~GppGtGKT~la-~aia~~~~~~ 78 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLA-KAVATEANST 78 (322)
T ss_dssp CEEEEECSSSSCHHHHH-HHHHHHHTCE
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHCCC
Confidence 45899999999999995 7888776544
No 204
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=88.26 E-value=0.22 Score=46.01 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=21.4
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
.+|+.+.|.|++|+||||++ ..++.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~-~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLA-CALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHH-HHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH-HHHHH
Confidence 57999999999999999995 66654
No 205
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=88.18 E-value=1.9 Score=43.55 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=23.4
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.-.+|+.++|+|++|+||||+ +..|+..
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTl-l~~Lag~ 152 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTT-IAKLANW 152 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHH-HHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHH-HHHHHHH
Confidence 347899999999999999999 5776653
No 206
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=88.07 E-value=0.29 Score=56.70 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=24.7
Q ss_pred cceeeecCCCCCccHHHHHHHHHh----c--CCCeEEEEEEecCC
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQ----K--NKNVTCIYVAIGQK 201 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~----~--~~~~~~V~~~iGer 201 (515)
..++|.|..|+|||+||. .++++ . ..+ .++++-+++.
T Consensus 148 ~~v~i~G~gG~GKTtLa~-~~~~~~~~~~~~~~~-~~~~v~~~~~ 190 (1249)
T 3sfz_A 148 GWVTIYGMAGCGKSVLAA-EAVRDHSLLEGCFSG-GVHWVSIGKQ 190 (1249)
T ss_dssp EEEEEECSTTSSHHHHHH-HHTCCHHHHTTTSTT-CEEEEECCSC
T ss_pred CEEEEEeCCCCCHHHHHH-HHhcChhHHHhhCCC-eEEEEEECCc
Confidence 457899999999999973 34433 1 223 3567777763
No 207
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=87.97 E-value=0.89 Score=53.37 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=30.3
Q ss_pred CcceeeecCCCCCccHHHHHHHHHh----cCCCeEEEEEEecCChHHHHHHHHH
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQ----KNKNVTCIYVAIGQKISSIKKTANL 211 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~----~~~~~~~V~~~iGer~~ev~~~~~~ 211 (515)
..-++|.|+.|+|||||| ..+.+. ..-+..++++.+++... ...+...
T Consensus 150 ~RVV~IvGmGGIGKTTLA-k~Vy~d~rV~~~Fd~gV~WVsVs~~~d-~~~IL~~ 201 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVA-LDVCLSYKVQCKMDFKIFWLNLKNCNS-PETVLEM 201 (1221)
T ss_dssp SCEEEECCSTTSSHHHHH-HHHHHHCHHHHHHSSCEEEEECCCSSS-HHHHHHH
T ss_pred CeEEEEEcCCCccHHHHH-HHHHHhhHHHHhCCCcEEEEEeCCCCC-HHHHHHH
Confidence 456899999999999997 444432 11222357777887653 3344443
No 208
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=87.93 E-value=0.25 Score=45.95 Aligned_cols=24 Identities=17% Similarity=0.237 Sum_probs=20.2
Q ss_pred CcceeeecCCCCCccHHHHHHHHHh
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+++|.|++|+||||++ ..++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~-~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLC-KAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHH-HHHHHH
T ss_pred CeEEEEECCCCCCHHHHH-HHHHHH
Confidence 568999999999999995 766654
No 209
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=87.85 E-value=0.25 Score=49.54 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=22.2
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
++|+.++|+|++|+||||+ +..++..
T Consensus 100 ~~g~vi~lvG~nGsGKTTl-l~~Lagl 125 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTT-IAKLGRY 125 (304)
T ss_dssp CSSSEEEEECSTTSSHHHH-HHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHH-HHHHHHH
Confidence 5799999999999999999 5766653
No 210
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=87.78 E-value=0.85 Score=45.48 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=18.2
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
-++|.|++|+|||+++ ..+++.
T Consensus 40 ~~ll~G~~G~GKT~la-~~la~~ 61 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIA-RLLAKG 61 (373)
T ss_dssp EEEEESCTTSSHHHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHH
Confidence 3799999999999995 666664
No 211
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=87.59 E-value=0.26 Score=45.62 Aligned_cols=27 Identities=19% Similarity=0.150 Sum_probs=22.6
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
+..+|..++|.|++|+||||++ ..+..
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~-~~l~~ 44 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLA-NQLSQ 44 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHH-HHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHH-HHHHH
Confidence 4678999999999999999995 65554
No 212
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=87.58 E-value=0.23 Score=54.73 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=27.5
Q ss_pred cccccccccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 152 AIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 152 ~ID~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
+++.+..+.+|+..+|+|++|+||||| +.+|..
T Consensus 107 ~l~~vs~i~~Ge~~~LiG~NGsGKSTL-lkiL~G 139 (607)
T 3bk7_A 107 VLYRLPIVKDGMVVGIVGPNGTGKTTA-VKILAG 139 (607)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHH-HHHHTT
T ss_pred eeCCCCCCCCCCEEEEECCCCChHHHH-HHHHhC
Confidence 455555689999999999999999999 577764
No 213
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=87.51 E-value=0.5 Score=49.62 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.0
Q ss_pred CcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
...++|.|++|||||+|| ..+++..
T Consensus 167 ~~~vLL~GppGtGKT~lA-~aia~~~ 191 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLA-KAVATEA 191 (444)
T ss_dssp CSEEEEECSTTSSHHHHH-HHHHHHC
T ss_pred CceEEEECCCCCCHHHHH-HHHHHHc
Confidence 356899999999999995 7788765
No 214
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=87.40 E-value=0.19 Score=51.00 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=26.6
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhcCC
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQKNK 189 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~~ 189 (515)
+.+-+|+.++|.|++|+||||| +..|+..-..
T Consensus 166 ~~i~~g~~v~i~G~~GsGKTTl-l~~l~g~~~~ 197 (330)
T 2pt7_A 166 DGIAIGKNVIVCGGTGSGKTTY-IKSIMEFIPK 197 (330)
T ss_dssp HHHHHTCCEEEEESTTSCHHHH-HHHGGGGSCT
T ss_pred hhccCCCEEEEECCCCCCHHHH-HHHHhCCCcC
Confidence 3567899999999999999999 6888876433
No 215
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=87.38 E-value=0.34 Score=43.04 Aligned_cols=25 Identities=32% Similarity=0.287 Sum_probs=20.2
Q ss_pred cceeeecCCCCCccHHHHHHHHHhcC
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQKN 188 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~~~ 188 (515)
|.++|.|.+|+||||++ ..++..-+
T Consensus 8 ~~i~l~G~~GsGKSTva-~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA-QELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHH-HHHHHHHT
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHhC
Confidence 78999999999999995 66665433
No 216
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=87.37 E-value=1.1 Score=47.77 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=26.0
Q ss_pred CcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEec
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIG 199 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iG 199 (515)
...++|.|++|||||++| ..|++..+. .++++-++
T Consensus 238 ~~~vLL~GppGtGKT~lA-raia~~~~~--~fv~vn~~ 272 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIA-RAVANETGA--FFFLINGP 272 (489)
T ss_dssp CCEEEEECSTTSSHHHHH-HHHHHHCSS--EEEEEEHH
T ss_pred CCcEEEECcCCCCHHHHH-HHHHHHhCC--CEEEEEch
Confidence 445999999999999995 888876643 34566543
No 217
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=87.33 E-value=0.26 Score=51.97 Aligned_cols=29 Identities=28% Similarity=0.531 Sum_probs=24.7
Q ss_pred ccccCCcc--eeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQR--ELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr--~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+-+|+. ++|+|++|+||||| +.+|...
T Consensus 35 l~i~~Gei~~vaLvG~nGaGKSTL-ln~L~G~ 65 (427)
T 2qag_B 35 KSVSQGFCFNILCVGETGLGKSTL-MDTLFNT 65 (427)
T ss_dssp HSCC-CCEEEEEEECSTTSSSHHH-HHHHHTS
T ss_pred eEecCCCeeEEEEECCCCCCHHHH-HHHHhCc
Confidence 57789999 99999999999999 6888764
No 218
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=87.28 E-value=0.43 Score=45.19 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=22.2
Q ss_pred CcceeeecCCCCCccHHHHHHHHHhcCCC
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQKNKN 190 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~~~~~ 190 (515)
...++|.|++|||||+++ ..+++..+..
T Consensus 39 ~~~vll~G~~GtGKT~la-~~la~~~~~~ 66 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA-KAVATEAQVP 66 (262)
T ss_dssp CCEEEEESCTTSSHHHHH-HHHHHHHTCC
T ss_pred CceEEEECCCCCCHHHHH-HHHHHHhCCC
Confidence 345899999999999995 7787765544
No 219
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=87.24 E-value=0.45 Score=50.05 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=17.6
Q ss_pred ceeeecCCCCCccHHHHHHHHH
Q psy2894 164 RELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~ 185 (515)
-.+|.|++|||||+++ ..+++
T Consensus 47 ~~li~G~aGTGKT~ll-~~~~~ 67 (459)
T 3upu_A 47 HVTINGPAGTGATTLT-KFIIE 67 (459)
T ss_dssp EEEEECCTTSCHHHHH-HHHHH
T ss_pred EEEEEeCCCCCHHHHH-HHHHH
Confidence 8999999999999995 45444
No 220
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=87.23 E-value=0.27 Score=52.95 Aligned_cols=32 Identities=16% Similarity=0.379 Sum_probs=26.2
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHHhcCCC
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIINQKNKN 190 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~ 190 (515)
.+-+|+.++|.|+.|+||||+ +.+++..-..+
T Consensus 256 ~v~~g~~i~I~GptGSGKTTl-L~aL~~~i~~~ 287 (511)
T 2oap_1 256 AIEHKFSAIVVGETASGKTTT-LNAIMMFIPPD 287 (511)
T ss_dssp HHHTTCCEEEEESTTSSHHHH-HHHHGGGSCTT
T ss_pred HHhCCCEEEEECCCCCCHHHH-HHHHHhhCCCC
Confidence 456899999999999999999 68887764443
No 221
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=87.12 E-value=0.55 Score=45.00 Aligned_cols=42 Identities=26% Similarity=0.236 Sum_probs=30.4
Q ss_pred CcceeeecCCCCCccHHHHHHHHHhcC-CCeEEEEEEecCChHH
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQKN-KNVTCIYVAIGQKISS 204 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~~~-~~~~~V~~~iGer~~e 204 (515)
+.-++|.|++|||||++| ..|.+... .+..++++-|..-..+
T Consensus 29 ~~~vll~G~~GtGKt~la-~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIA-SRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp CSCEEEECCTTSCHHHHH-HHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred CCCEEEECCCCCcHHHHH-HHHHHhcCccCCCeEEEecCCCChh
Confidence 467999999999999995 77776543 2334677777765543
No 222
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=87.01 E-value=0.28 Score=47.34 Aligned_cols=26 Identities=12% Similarity=0.196 Sum_probs=21.9
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
-+|..++|.|++|+||||++ ..++..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~-k~La~~ 50 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLC-KALAES 50 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHH-HHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHH-HHHHHh
Confidence 47889999999999999994 777643
No 223
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=86.95 E-value=0.38 Score=48.11 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=30.3
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHhc--CCCeEEEEEEecCChHHHHHHHHHHh
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQK--NKNVTCIYVAIGQKISSIKKTANLLE 213 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~~--~~~~~~V~~~iGer~~ev~~~~~~l~ 213 (515)
.++.+.|.|++|||||+|+ ..|++.. ..+..++|+-+ .++++.+.
T Consensus 151 ~~~~lll~G~~GtGKT~La-~aia~~~~~~~g~~v~~~~~-------~~l~~~l~ 197 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLL-AAMAHELSEKKGVSTTLLHF-------PSFAIDVK 197 (308)
T ss_dssp SCCEEEEECSTTSSHHHHH-HHHHHHHHHHSCCCEEEEEH-------HHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHH-HHHHHHHHHhcCCcEEEEEH-------HHHHHHHH
Confidence 4789999999999999995 6666642 23333455443 35666665
No 224
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=86.94 E-value=0.28 Score=44.77 Aligned_cols=23 Identities=26% Similarity=0.561 Sum_probs=19.9
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++|+|++|+||||| +..+....
T Consensus 7 kv~lvG~~g~GKSTL-l~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNL-LSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHH-HHHHHHSC
T ss_pred EEEEECcCCCCHHHH-HHHHhcCC
Confidence 689999999999999 68887653
No 225
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=86.88 E-value=0.26 Score=44.86 Aligned_cols=23 Identities=26% Similarity=0.561 Sum_probs=20.2
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++|+|++|+||||| +..+....
T Consensus 31 kv~lvG~~g~GKSTL-l~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNL-LSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHH-HHHHHHSC
T ss_pred EEEEECcCCCCHHHH-HHHHhcCC
Confidence 789999999999999 68888754
No 226
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.83 E-value=0.73 Score=49.28 Aligned_cols=35 Identities=11% Similarity=0.195 Sum_probs=25.1
Q ss_pred CcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEec
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIG 199 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iG 199 (515)
..-++|.|++|||||++| ..+++..+ ..++++-+.
T Consensus 77 ~~~lLL~GppGtGKTtla-~~la~~l~--~~~i~in~s 111 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAA-HLVAQELG--YDILEQNAS 111 (516)
T ss_dssp CSEEEEECSTTSSHHHHH-HHHHHHTT--CEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHHcC--CCEEEEeCC
Confidence 467999999999999995 77777653 333444433
No 227
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=86.82 E-value=0.29 Score=42.13 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=19.7
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++++|++|+|||+| +..+.+..
T Consensus 5 ~i~v~G~~~~GKSsl-i~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSAL-TVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHSC
T ss_pred EEEEECCCCCCHHHH-HHHHHcCC
Confidence 789999999999999 67777653
No 228
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=86.73 E-value=2.2 Score=42.94 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=23.7
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
...++|..++|+|++|+||||+ +..++.
T Consensus 51 ~~~~~~~~i~i~G~~g~GKSTl-~~~l~~ 78 (341)
T 2p67_A 51 PYCGNTLRLGVTGTPGAGKSTF-LEAFGM 78 (341)
T ss_dssp GGCSCSEEEEEEECTTSCHHHH-HHHHHH
T ss_pred cccCCCEEEEEEcCCCCCHHHH-HHHHHH
Confidence 3578999999999999999999 466654
No 229
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=86.65 E-value=0.3 Score=42.30 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=19.7
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
|++++|++|+|||+| +..+.+..
T Consensus 7 ~i~v~G~~~~GKssl-~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSM-IQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHCC
T ss_pred EEEEECcCCCCHHHH-HHHHHcCC
Confidence 689999999999999 68877653
No 230
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=86.64 E-value=0.29 Score=53.28 Aligned_cols=30 Identities=23% Similarity=0.439 Sum_probs=26.4
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.+-+|+.++|+|++|+||||| +..|...-
T Consensus 364 l~i~~G~~~~ivG~sGsGKSTl-l~~l~g~~ 393 (582)
T 3b5x_A 364 FSIPQGKTVALVGRSGSGKSTI-ANLFTRFY 393 (582)
T ss_pred EEECCCCEEEEECCCCCCHHHH-HHHHhcCC
Confidence 5788999999999999999999 68887753
No 231
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=86.63 E-value=0.3 Score=42.08 Aligned_cols=23 Identities=26% Similarity=0.641 Sum_probs=19.5
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
|++++|++|+|||+| +..+.+..
T Consensus 3 ki~v~G~~~~GKSsl-i~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSL-FNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHCC
T ss_pred EEEEECCCCCCHHHH-HHHHhCCC
Confidence 689999999999999 67777643
No 232
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=86.48 E-value=0.34 Score=49.89 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=24.6
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+.++|+|+.|+||||+ +..|+..
T Consensus 152 l~~~~g~vi~lvG~nGsGKTTl-l~~Lag~ 180 (359)
T 2og2_A 152 LGFRKPAVIMIVGVNGGGKTTS-LGKLAHR 180 (359)
T ss_dssp CCSSSSEEEEEECCTTSCHHHH-HHHHHHH
T ss_pred eecCCCeEEEEEcCCCChHHHH-HHHHHhh
Confidence 3578999999999999999999 5777664
No 233
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.47 E-value=0.32 Score=42.16 Aligned_cols=23 Identities=26% Similarity=0.535 Sum_probs=19.8
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++++|++|+|||+| +..+.+..
T Consensus 5 ~i~v~G~~~~GKssl-i~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSI-VLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHSC
T ss_pred EEEEECCCCCCHHHH-HHHHhcCC
Confidence 689999999999999 68877654
No 234
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=86.45 E-value=0.27 Score=53.28 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=24.7
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.+-+|++++|+|+.|+||||| +.+|...
T Consensus 308 ~i~~Ge~~~i~G~NGsGKSTL-lk~l~Gl 335 (538)
T 1yqt_A 308 EIKKGEVIGIVGPNGIGKTTF-VKMLAGV 335 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHH-HHHHHTS
T ss_pred ccCCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 367999999999999999999 6888764
No 235
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=86.33 E-value=0.32 Score=42.08 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=19.9
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++++|++|+|||+| +..+.+..
T Consensus 5 ki~v~G~~~~GKssl-i~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSAL-TVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHCC
T ss_pred EEEEECCCCCCHHHH-HHHHHcCC
Confidence 689999999999999 68887753
No 236
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=86.27 E-value=0.67 Score=50.75 Aligned_cols=29 Identities=21% Similarity=0.202 Sum_probs=22.0
Q ss_pred EEEEEeCC-CCCCCCCCEEEEcCCcccccc
Q psy2894 71 IGAVILGK-YEHITEGDIVKCTGRILEVPI 99 (515)
Q Consensus 71 v~~~~~~~-~~gi~~G~~V~~tg~~~~vpv 99 (515)
+.+.+.++ ...+++||.|..||-....+.
T Consensus 207 ~~v~l~~dlv~~~~pGd~v~v~Gi~~~~~~ 236 (595)
T 3f9v_A 207 LEIILEDDLVDSARPGDRVKVTGILDIKQD 236 (595)
T ss_dssp EEEEEEGGGTTCSCSSCEEEEEEECCCCCS
T ss_pred EEEEEecccccccccCCEEEEEEEEEeccc
Confidence 55666665 678999999999996666654
No 237
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=86.26 E-value=0.46 Score=44.03 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=18.7
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++|.|++|+||||++ ..++..-
T Consensus 2 ~I~l~G~~GsGKsT~a-~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG-ERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHHHHh
Confidence 5899999999999995 6666543
No 238
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=86.25 E-value=0.29 Score=48.16 Aligned_cols=24 Identities=17% Similarity=0.510 Sum_probs=20.7
Q ss_pred ceeeecCCCCCccHHHHHHHHHhcC
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQKN 188 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~~ 188 (515)
+++|+|++|+||||| +.+|.....
T Consensus 4 ~v~lvG~nGaGKSTL-ln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTL-VNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHH-HHHHHHHHC
T ss_pred EEEEECCCCCCHHHH-HHHHhCCCC
Confidence 578999999999999 799887643
No 239
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=86.20 E-value=0.67 Score=47.03 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=25.4
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEe
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAI 198 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~i 198 (515)
....++|.|++|||||++| ..+++..+.. ++++-+
T Consensus 116 ~~~~vLl~GppGtGKT~la-~aia~~~~~~--~~~i~~ 150 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIG-KCIASQSGAT--FFSISA 150 (357)
T ss_dssp CCSEEEEESSTTSSHHHHH-HHHHHHTTCE--EEEEEG
T ss_pred CCceEEEECCCCCCHHHHH-HHHHHHcCCe--EEEEeh
Confidence 3556999999999999995 7787765443 344443
No 240
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=86.15 E-value=0.34 Score=41.79 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=19.7
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
|++++|++|+|||+| +..+.+..
T Consensus 6 ~i~v~G~~~~GKssl-~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSAL-TLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHSC
T ss_pred EEEEECCCCCCHHHH-HHHHHhCc
Confidence 789999999999999 67777653
No 241
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=86.12 E-value=0.34 Score=42.18 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=19.8
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
|++++|++|+|||+| +..+.+..
T Consensus 8 ~i~v~G~~~~GKssl-i~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSL-VLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHH-HHHHHHCC
T ss_pred EEEEECcCCCCHHHH-HHHHHcCC
Confidence 689999999999999 68877653
No 242
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=86.07 E-value=0.32 Score=42.26 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=19.7
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
|++++|++|+|||+| +..+.+..
T Consensus 5 ~i~v~G~~~~GKssl-i~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCL-LVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHCC
T ss_pred EEEEECcCCCCHHHH-HHHHHhCC
Confidence 689999999999999 68877654
No 243
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=86.01 E-value=0.7 Score=45.03 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=20.3
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
++...++|.|++|+|||+++ ..+++.
T Consensus 44 ~~~~~~ll~G~~G~GKT~la-~~l~~~ 69 (327)
T 1iqp_A 44 GSMPHLLFAGPPGVGKTTAA-LALARE 69 (327)
T ss_dssp TCCCEEEEESCTTSSHHHHH-HHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHH-HHHHHH
Confidence 44446999999999999995 666654
No 244
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=85.99 E-value=0.9 Score=45.21 Aligned_cols=52 Identities=8% Similarity=0.079 Sum_probs=32.9
Q ss_pred ccCCcceeeecCCCCCccHHHHHHHHHh-c-CCCeEEEEEEecCChHHHHHHHHH
Q psy2894 159 IGKGQRELIIGDRQTGKSSIAIDIIINQ-K-NKNVTCIYVAIGQKISSIKKTANL 211 (515)
Q Consensus 159 igrGqr~~I~g~~g~GKt~l~~~~i~~~-~-~~~~~~V~~~iGer~~ev~~~~~~ 211 (515)
..+|+.++++|+.|+||||++ ..++.. + ..+-.+.++...-....+.+.+..
T Consensus 102 ~~~g~vi~lvG~~GsGKTTl~-~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~ 155 (296)
T 2px0_A 102 PIHSKYIVLFGSTGAGKTTTL-AKLAAISMLEKHKKIAFITTDTYRIAAVEQLKT 155 (296)
T ss_dssp CCCSSEEEEEESTTSSHHHHH-HHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHH-HHHHHHHHHhcCCEEEEEecCcccchHHHHHHH
Confidence 357999999999999999995 555442 2 234344556655544444444444
No 245
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=85.98 E-value=0.34 Score=49.89 Aligned_cols=27 Identities=30% Similarity=0.311 Sum_probs=23.9
Q ss_pred ccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 159 IGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 159 igrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+-+|+.++|+|++|+||||+ +..|+..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTl-l~~l~~~ 159 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTT-IASMIDY 159 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHH-HHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHH-HHHHHhh
Confidence 67899999999999999999 6777764
No 246
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=85.97 E-value=0.28 Score=43.26 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=19.1
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+++|+|++|+|||+| +..+.+.
T Consensus 5 ~v~lvG~~gvGKStL-~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTI-FNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHH-HHHHHCC
T ss_pred EEEEECCCCCCHHHH-HHHHhCC
Confidence 689999999999999 6777754
No 247
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=85.97 E-value=0.36 Score=41.82 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=19.5
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
|++++|++|+|||+| +..+.+..
T Consensus 2 ki~~~G~~~~GKssl-~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTI-LYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHHC
T ss_pred EEEEECCCCCCHHHH-HHHHHcCC
Confidence 689999999999999 67777654
No 248
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=85.95 E-value=0.57 Score=46.30 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=23.1
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
.+-.+|.-+.|.|++|+||||++ ..++..-
T Consensus 28 ~~~~~~~livl~G~sGsGKSTla-~~L~~~~ 57 (287)
T 1gvn_B 28 KAVESPTAFLLGGQPGSGKTSLR-SAIFEET 57 (287)
T ss_dssp CCCSSCEEEEEECCTTSCTHHHH-HHHHHHT
T ss_pred cCCCCCeEEEEECCCCCCHHHHH-HHHHHHh
Confidence 34556778999999999999995 6666543
No 249
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=85.93 E-value=0.43 Score=42.88 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=21.2
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
-++..+.|.|++|+||||++ ..++..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~-~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLG-KELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHH-HHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHH-HHHHHH
Confidence 46788999999999999995 656544
No 250
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=85.92 E-value=0.47 Score=50.95 Aligned_cols=29 Identities=28% Similarity=0.473 Sum_probs=22.5
Q ss_pred ccCCcceeeecCCCCCccHHHHHHHHHhcCCC
Q psy2894 159 IGKGQRELIIGDRQTGKSSIAIDIIINQKNKN 190 (515)
Q Consensus 159 igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~ 190 (515)
+-+| ++|+|++|||||+|+ ..|++..+..
T Consensus 63 ip~G--vLL~GppGtGKTtLa-raIa~~~~~~ 91 (499)
T 2dhr_A 63 IPKG--VLLVGPPGVGKTHLA-RAVAGEARVP 91 (499)
T ss_dssp CCSE--EEEECSSSSSHHHHH-HHHHHHTTCC
T ss_pred CCce--EEEECCCCCCHHHHH-HHHHHHhCCC
Confidence 3455 999999999999994 7787765433
No 251
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=85.87 E-value=0.33 Score=41.62 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=19.7
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++++|++|+|||+| +..+.++.
T Consensus 5 ~i~v~G~~~~GKssl-~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSAL-TIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHSS
T ss_pred EEEEECCCCCCHHHH-HHHHHhCc
Confidence 689999999999999 67777653
No 252
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=85.82 E-value=0.35 Score=41.94 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.0
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++++|++|+|||+| +..+.+..
T Consensus 8 ~i~v~G~~~~GKSsl-i~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSI-MWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHSC
T ss_pred EEEEECcCCCCHHHH-HHHHHcCC
Confidence 689999999999999 68887754
No 253
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=85.79 E-value=0.35 Score=42.44 Aligned_cols=23 Identities=30% Similarity=0.647 Sum_probs=19.7
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++++|++|+|||+| +..+.+..
T Consensus 9 ~i~v~G~~~~GKSsl-i~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSL-MNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHSC
T ss_pred EEEEECCCCCCHHHH-HHHHHcCC
Confidence 689999999999999 68877653
No 254
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=85.77 E-value=0.39 Score=50.08 Aligned_cols=30 Identities=23% Similarity=0.281 Sum_probs=25.9
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
|-.+.+|.+++|+|++|+||||| +.++.+.
T Consensus 14 lg~v~~g~~vgiVG~pnaGKSTL-~n~Ltg~ 43 (392)
T 1ni3_A 14 WGRPGNNLKTGIVGMPNVGKSTF-FRAITKS 43 (392)
T ss_dssp CSSSSSCCEEEEEECSSSSHHHH-HHHHHHS
T ss_pred hccccCCCEEEEECCCCCCHHHH-HHHHHCC
Confidence 33567899999999999999999 7998874
No 255
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=85.76 E-value=0.47 Score=43.84 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=18.6
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++|.|++|+||||++ ..++..-
T Consensus 2 ~I~l~G~~GsGKsT~a-~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA-EQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHh
Confidence 5899999999999995 6665543
No 256
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=85.72 E-value=0.48 Score=49.85 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=25.6
Q ss_pred CcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEE
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVA 197 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~ 197 (515)
+..+++.|+||||||++| ..+++..+.++..+++.
T Consensus 63 ~~~iLl~GppGtGKT~la-~ala~~l~~~~~~~~~~ 97 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALA-LAIAQELGSKVPFCPMV 97 (456)
T ss_dssp TCEEEEECCTTSSHHHHH-HHHHHHHCTTSCEEEEE
T ss_pred CCeEEEECCCcCCHHHHH-HHHHHHhCCCceEEEEe
Confidence 456999999999999996 77777665444344444
No 257
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=85.70 E-value=0.42 Score=43.85 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=22.0
Q ss_pred ccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 159 IGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 159 igrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.-+|-.+.|.|++|+||||++ ..+...
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~-~~L~~~ 33 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQS-KLLVEY 33 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHH-HHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHH-HHHHHH
Confidence 346889999999999999995 666653
No 258
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=85.68 E-value=0.36 Score=42.82 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.0
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
|++|+|++|+|||+| +..+.+..
T Consensus 13 ki~v~G~~~~GKSsl-i~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSV-LYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHSC
T ss_pred EEEEECCCCCCHHHH-HHHHhcCC
Confidence 789999999999999 68887653
No 259
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=85.68 E-value=0.69 Score=59.01 Aligned_cols=27 Identities=19% Similarity=0.291 Sum_probs=21.3
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
-.|..++++||+|||||+++-+.+.+.
T Consensus 1265 ~~~~~vLL~GPpGtGKT~la~~~l~~~ 1291 (2695)
T 4akg_A 1265 NSKRGIILCGPPGSGKTMIMNNALRNS 1291 (2695)
T ss_dssp HHTCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred HCCCeEEEECCCCCCHHHHHHHHHhcC
Confidence 357899999999999999964555443
No 260
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=85.63 E-value=0.51 Score=42.19 Aligned_cols=27 Identities=19% Similarity=0.159 Sum_probs=16.9
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHhcC
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQKN 188 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~~~ 188 (515)
++..+.|.|.+|+||||++ ..+...-+
T Consensus 4 ~~~~I~l~G~~GsGKST~a-~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTA-HTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHH-HHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHhcC
Confidence 6778999999999999995 66665433
No 261
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=85.61 E-value=0.46 Score=51.84 Aligned_cols=32 Identities=19% Similarity=0.476 Sum_probs=27.3
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHhcC
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQKN 188 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~ 188 (515)
=+.+-+|+.++|+|++|+||||| +..|...-.
T Consensus 364 sl~i~~G~~~~ivG~sGsGKSTL-l~~l~g~~~ 395 (595)
T 2yl4_A 364 SLSIPSGSVTALVGPSGSGKSTV-LSLLLRLYD 395 (595)
T ss_dssp EEEECTTCEEEEECCTTSSSTHH-HHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHH-HHHHhcCcC
Confidence 35788999999999999999999 688877543
No 262
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=85.57 E-value=0.29 Score=46.97 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=20.8
Q ss_pred eeeecCCCCCccHHHHHHHHHhcCCC
Q psy2894 165 ELIIGDRQTGKSSIAIDIIINQKNKN 190 (515)
Q Consensus 165 ~~I~g~~g~GKt~l~~~~i~~~~~~~ 190 (515)
++|.|++|||||++| ..+++..+..
T Consensus 47 vll~G~~GtGKT~la-~~la~~~~~~ 71 (268)
T 2r62_A 47 VLLVGPPGTGKTLLA-KAVAGEAHVP 71 (268)
T ss_dssp CCCBCSSCSSHHHHH-HHHHHHHTCC
T ss_pred EEEECCCCCcHHHHH-HHHHHHhCCC
Confidence 899999999999995 7788765544
No 263
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=85.52 E-value=0.3 Score=42.71 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=18.9
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+++|+|++|+|||+| +..+.+.
T Consensus 6 ki~i~G~~~vGKSsl-~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSL-ASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHH-HHHHHCC
T ss_pred EEEEECCCCccHHHH-HHHHhcC
Confidence 689999999999999 6777654
No 264
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=85.51 E-value=0.41 Score=47.50 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=25.3
Q ss_pred CcceeeecCCCCCccHHHHHHHHHhcCCCeEEE
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQKNKNVTCI 194 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V 194 (515)
|..+++.|++|||||+++ ..+++..+..+..|
T Consensus 46 ~~~vll~G~pGtGKT~la-~~la~~~~~~~~~i 77 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSV-NTLAKTMDLDFHRI 77 (331)
T ss_dssp TCCEEEESCCCHHHHHHH-HHHHHHTTCCEEEE
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHhCCCeEEE
Confidence 678999999999999995 77777665554433
No 265
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=85.48 E-value=0.57 Score=45.39 Aligned_cols=36 Identities=28% Similarity=0.315 Sum_probs=26.0
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEec
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIG 199 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iG 199 (515)
.+..++|.|++|||||+++ ..+++..+.. ++++-+.
T Consensus 49 ~~~~vll~G~~GtGKT~la-~~la~~l~~~--~~~i~~~ 84 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIA-RRLAKLANAP--FIKVEAT 84 (310)
T ss_dssp CCCCEEEECCTTSSHHHHH-HHHHHHHTCC--EEEEEGG
T ss_pred CCceEEEECCCCCCHHHHH-HHHHHHhCCC--EEEEcch
Confidence 3567999999999999995 7777765443 3444443
No 266
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=85.48 E-value=0.97 Score=41.04 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=21.2
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+|-.+.|.|++|+||||++ ..++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~-~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC-MNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH-HHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHH-HHHHHH
Confidence 6778999999999999995 666654
No 267
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=85.42 E-value=0.51 Score=42.39 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=19.8
Q ss_pred CcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+..+.|+|++|+||||++ ..++..-
T Consensus 5 ~~~i~l~G~~GsGKst~a-~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG-SQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHH-HHHHHHH
T ss_pred CCEEEEECCCCCCHHHHH-HHHHHHh
Confidence 557899999999999996 5565443
No 268
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=85.41 E-value=0.39 Score=41.60 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=19.2
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+++++|++|+|||+| +..+.+.
T Consensus 8 ~i~v~G~~~~GKssl-i~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSL-VLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHS
T ss_pred EEEEECCCCCCHHHH-HHHHHcC
Confidence 689999999999999 6777764
No 269
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=85.35 E-value=0.58 Score=47.29 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=23.2
Q ss_pred CcceeeecCCCCCccHHHHHHHHHhcCCCe
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQKNKNV 191 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~~~~~~ 191 (515)
+..+++.|++|||||++| ..|++..+..+
T Consensus 51 ~~~vll~GppGtGKT~la-~~ia~~~~~~~ 79 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA-ETLARLLDVPF 79 (363)
T ss_dssp CCCEEEECCTTSSHHHHH-HHHHHHTTCCE
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHcCCCE
Confidence 557999999999999995 77877665443
No 270
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=85.30 E-value=0.52 Score=45.58 Aligned_cols=52 Identities=13% Similarity=0.143 Sum_probs=30.3
Q ss_pred CCc-ceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecC-ChHHHHHHHHHH
Q psy2894 161 KGQ-RELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQ-KISSIKKTANLL 212 (515)
Q Consensus 161 rGq-r~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGe-r~~ev~~~~~~l 212 (515)
||. ++.+.|.+|+||||+++.........+..++++-+.. ...+...+++.+
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl 57 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGL 57 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTS
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCc
Confidence 443 4778899999999998666544333333334444543 344444444443
No 271
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=85.23 E-value=0.33 Score=53.42 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=24.7
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.+.+|+.++|+|+.|+||||| +.+|+..
T Consensus 378 ~v~~Gei~~i~G~NGsGKSTL-lk~l~Gl 405 (607)
T 3bk7_A 378 EIRKGEVIGIVGPNGIGKTTF-VKMLAGV 405 (607)
T ss_dssp EEETTCEEEEECCTTSSHHHH-HHHHHTS
T ss_pred ccCCCCEEEEECCCCCCHHHH-HHHHhcC
Confidence 367999999999999999999 6888764
No 272
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=85.23 E-value=2.3 Score=40.00 Aligned_cols=22 Identities=23% Similarity=0.567 Sum_probs=18.5
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
|+.|+|++|+|||+| +..+++.
T Consensus 15 KivlvGd~~VGKTsL-i~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSL-ITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHS
T ss_pred EEEEECcCCcCHHHH-HHHHHhC
Confidence 789999999999999 5666654
No 273
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=85.21 E-value=0.39 Score=42.57 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=19.9
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
|++++|++|+|||+| +..+.+..
T Consensus 6 ki~v~G~~~~GKSsl-i~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSAL-TIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHSS
T ss_pred EEEEECCCCCCHHHH-HHHHHhCC
Confidence 689999999999999 68887653
No 274
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=85.19 E-value=0.46 Score=46.38 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=19.6
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.+..++|.|++|||||++| ..+++.
T Consensus 66 ~~~~vll~G~~GtGKT~la-~~la~~ 90 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVA-LKMAGL 90 (309)
T ss_dssp CCCEEEEEECTTSSHHHHH-HHHHHH
T ss_pred CCceEEEECCCCCCHHHHH-HHHHHH
Confidence 3556999999999999996 555543
No 275
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=85.17 E-value=2.8 Score=43.52 Aligned_cols=95 Identities=11% Similarity=0.068 Sum_probs=48.6
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecC--ChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhHHH
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQ--KISSIKKTANLLEKYGAMPYTIIVAATASDSASMQFIS 238 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGe--r~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~~a 238 (515)
+..-+.|.|.+|+||||++ ..++... +. +++-.+. ..+...+.+......| +.+||.++.- ....|..
T Consensus 257 ~~~lIil~G~pGSGKSTla-~~L~~~~--~~--~~i~~D~~~~~~~~~~~~~~~l~~g---~~vIiD~~~~-~~~~r~~- 326 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFI-QEHLVSA--GY--VHVNRDTLGSWQRCVSSCQAALRQG---KRVVIDNTNP-DVPSRAR- 326 (416)
T ss_dssp SCCEEEEESCTTSSHHHHH-HHHTGGG--TC--EECCGGGSCSHHHHHHHHHHHHHTT---CCEEEESCCC-SHHHHHH-
T ss_pred CCEEEEEECCCCCCHHHHH-HHHHHhc--Cc--EEEccchHHHHHHHHHHHHHHHhcC---CcEEEeCCCC-CHHHHHH-
Confidence 4556788999999999996 5555432 21 2222222 1233333334333333 5666666643 2333221
Q ss_pred HhhhhhhHHHHHHcCCcEEEEEechhHHHHHHH
Q psy2894 239 AYSGCTIGEYFRDHGKDALVVYDDLSKQAVAYR 271 (515)
Q Consensus 239 ~~~a~~iAE~frd~G~~Vlli~Dsltr~a~A~r 271 (515)
+ .+.++..|..+.+|+=+.+.-.-..|
T Consensus 327 -~-----~~~~~~~~~~~~~v~l~~~~e~l~~R 353 (416)
T 3zvl_A 327 -Y-----IQCAKDAGVPCRCFNFCATIEQARHN 353 (416)
T ss_dssp -H-----HHHHHHHTCCEEEEEECCCHHHHHHH
T ss_pred -H-----HHHHHHcCCeEEEEEEeCCHHHHHHH
Confidence 1 12234557777777656554443344
No 276
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=85.15 E-value=0.35 Score=41.94 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.4
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+++++|++|+|||+| +..+.+.
T Consensus 5 ~i~v~G~~~~GKssl-i~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSL-VLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHH-HHHHHTC
T ss_pred EEEEECCCCCCHHHH-HHHHHcC
Confidence 789999999999999 6888764
No 277
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=85.14 E-value=0.29 Score=53.06 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=24.8
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.+.+|+.++|+|++|+||||| +.+|...
T Consensus 290 ~i~~Gei~~i~G~nGsGKSTL-l~~l~Gl 317 (538)
T 3ozx_A 290 EAKEGEIIGILGPNGIGKTTF-ARILVGE 317 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHH-HHHHTTS
T ss_pred eECCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 578999999999999999999 6888763
No 278
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.14 E-value=1.5 Score=42.46 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=19.9
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
++...++|.|++|+|||+++ ..+++.
T Consensus 40 ~~~~~~ll~G~~G~GKt~la-~~l~~~ 65 (323)
T 1sxj_B 40 GNMPHMIISGMPGIGKTTSV-HCLAHE 65 (323)
T ss_dssp CCCCCEEEECSTTSSHHHHH-HHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHH-HHHHHH
Confidence 34445999999999999995 666654
No 279
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=85.05 E-value=0.37 Score=42.95 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=19.6
Q ss_pred cceeeecCCCCCccHHHHHHHHHh
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
-+++++|++|+|||+| +..+.+.
T Consensus 8 ~~i~lvG~~gvGKStL-~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTI-FNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHH-HHHHHTT
T ss_pred CEEEEECCCCCCHHHH-HHHHhCC
Confidence 3789999999999999 6877753
No 280
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=85.01 E-value=0.55 Score=51.32 Aligned_cols=31 Identities=23% Similarity=0.542 Sum_probs=26.9
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhcC
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQKN 188 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~ 188 (515)
+.+-+|+.++|+|++|+||||| +..|...-.
T Consensus 376 l~i~~G~~~~ivG~sGsGKSTl-l~~l~g~~~ 406 (598)
T 3qf4_B 376 FHIKPGQKVALVGPTGSGKTTI-VNLLMRFYD 406 (598)
T ss_dssp EECCTTCEEEEECCTTSSTTHH-HHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCcHHHH-HHHHhcCcC
Confidence 5788999999999999999999 688876543
No 281
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=85.00 E-value=0.34 Score=56.24 Aligned_cols=29 Identities=28% Similarity=0.407 Sum_probs=25.9
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
=+.+.+|++.+|+|+.|+||||| +.+|..
T Consensus 455 sl~I~~Ge~v~LiGpNGsGKSTL-Lk~Lag 483 (986)
T 2iw3_A 455 QLRLKRARRYGICGPNGCGKSTL-MRAIAN 483 (986)
T ss_dssp EEEEETTCEEEEECSTTSSHHHH-HHHHHH
T ss_pred eEEEcCCCEEEEECCCCCCHHHH-HHHHhC
Confidence 35789999999999999999999 688875
No 282
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=84.98 E-value=0.41 Score=42.06 Aligned_cols=23 Identities=35% Similarity=0.690 Sum_probs=19.8
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++++|++|+|||+| +..+.+..
T Consensus 10 ~i~v~G~~~~GKSsl-i~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSL-MHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHSC
T ss_pred EEEEECCCCCCHHHH-HHHHHhCc
Confidence 789999999999999 67777653
No 283
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=84.98 E-value=0.41 Score=49.54 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=24.6
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+|+.++|.|++|+||||| +..++..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl-~~~l~~~ 192 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTL-AAALLEL 192 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHH-HHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHH-HHHHHhh
Confidence 4678899999999999999999 4766653
No 284
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=84.95 E-value=0.42 Score=42.98 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=20.8
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+|..++|.|++|+||||++ ..+...
T Consensus 4 ~g~~i~l~G~~GsGKST~~-~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS-MALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH-HHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHH
Confidence 6889999999999999995 666553
No 285
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=84.94 E-value=0.45 Score=51.71 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=27.1
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHhcC
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQKN 188 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~ 188 (515)
=+.+-+|+.++|+|++|+||||| +..|...-.
T Consensus 363 ~~~i~~G~~~~ivG~sGsGKSTL-l~~l~g~~~ 394 (582)
T 3b60_A 363 NLKIPAGKTVALVGRSGSGKSTI-ASLITRFYD 394 (582)
T ss_dssp EEEECTTCEEEEEECTTSSHHHH-HHHHTTTTC
T ss_pred eEEEcCCCEEEEECCCCCCHHHH-HHHHhhccC
Confidence 35788999999999999999999 688876543
No 286
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=84.93 E-value=0.42 Score=45.21 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=23.7
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.-+|.-++|.|+.|+||||+ +..+...
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl-~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTY-LNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHH-HHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHH-HHHHHhc
Confidence 556899999999999999999 5777655
No 287
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=84.83 E-value=0.44 Score=43.01 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=21.3
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.+|-.+.|.|++|+||||++ ..++..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~-~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQC-EKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHH-HHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH-HHHHHH
Confidence 46778999999999999995 666654
No 288
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=84.81 E-value=0.43 Score=41.91 Aligned_cols=22 Identities=23% Similarity=0.554 Sum_probs=18.9
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+++++|++|+|||+| +..+.+.
T Consensus 8 ki~v~G~~~~GKssl-~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSL-TTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHH-HHHHHGG
T ss_pred EEEEECcCCCCHHHH-HHHHHhC
Confidence 689999999999999 5777654
No 289
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=84.81 E-value=0.42 Score=41.57 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=21.1
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.=+++++|++|+|||+| +..+.+..
T Consensus 6 ~~~~i~v~G~~~~GKssl-~~~l~~~~ 31 (171)
T 1upt_A 6 REMRILILGLDGAGKTTI-LYRLQVGE 31 (171)
T ss_dssp SCEEEEEECSTTSSHHHH-HHHHHHSS
T ss_pred CccEEEEECCCCCCHHHH-HHHHhcCC
Confidence 345799999999999999 68877643
No 290
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=84.78 E-value=0.41 Score=49.13 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=22.8
Q ss_pred ccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 159 IGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 159 igrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.-+|+.++|.|++|+||||+ +..+++.
T Consensus 120 ~~~~g~i~I~GptGSGKTTl-L~~l~g~ 146 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTT-LAAMLDY 146 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHH-HHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHH-HHHHHhc
Confidence 45677999999999999999 5777664
No 291
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=84.78 E-value=0.43 Score=41.80 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=19.9
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++++|++|+|||+| +..+.+..
T Consensus 17 ~i~v~G~~~~GKSsl-i~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCL-LHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHSC
T ss_pred EEEEECCCCCCHHHH-HHHHHcCC
Confidence 789999999999999 68887654
No 292
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=84.71 E-value=0.47 Score=42.51 Aligned_cols=25 Identities=12% Similarity=0.329 Sum_probs=19.9
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+|..+.|.|++|+||||++ ..+...
T Consensus 2 ~~~~I~i~G~~GsGKsT~~-~~L~~~ 26 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSS-QLAMDN 26 (192)
T ss_dssp -CCEEEEECCTTSCHHHHH-HHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHH
Confidence 3668999999999999995 666653
No 293
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=84.67 E-value=0.4 Score=42.08 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.7
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+++++|++|+|||+| +..+.+.
T Consensus 11 ~i~v~G~~~~GKssl-i~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSAL-TIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHH-HHHHHHS
T ss_pred EEEEECCCCCCHHHH-HHHHHhC
Confidence 789999999999999 6888775
No 294
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=84.63 E-value=0.33 Score=42.47 Aligned_cols=19 Identities=37% Similarity=0.485 Sum_probs=16.2
Q ss_pred ceeeecCCCCCccHHHHHHH
Q psy2894 164 RELIIGDRQTGKSSIAIDII 183 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i 183 (515)
.++|.|++|+||||++ ..+
T Consensus 3 ~I~l~G~~GsGKsT~a-~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA-KLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHH-HHH
T ss_pred EEEEECCCCCCHHHHH-HHH
Confidence 3789999999999996 556
No 295
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=84.62 E-value=0.41 Score=41.91 Aligned_cols=22 Identities=23% Similarity=0.567 Sum_probs=19.5
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+++++|++|+|||+| +..+.+.
T Consensus 16 ~i~v~G~~~~GKssl-i~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSL-ITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHS
T ss_pred EEEEECCCCCCHHHH-HHHHHcC
Confidence 799999999999999 6887764
No 296
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=84.52 E-value=0.43 Score=44.76 Aligned_cols=27 Identities=22% Similarity=0.414 Sum_probs=20.3
Q ss_pred ccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 159 IGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 159 igrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.-++.++.|.|++|+||||++ ..++..
T Consensus 4 ~~~~~~I~l~G~~GsGKsT~a-~~La~~ 30 (227)
T 1zd8_A 4 SARLLRAVIMGAPGSGKGTVS-SRITTH 30 (227)
T ss_dssp ---CCEEEEEECTTSSHHHHH-HHHHHH
T ss_pred cccCcEEEEECCCCCCHHHHH-HHHHHH
Confidence 345678999999999999995 666654
No 297
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=84.48 E-value=0.6 Score=41.96 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=18.8
Q ss_pred cceeeecCCCCCccHHHHHHHHHh
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.+++|.|++|+||||++ ..++..
T Consensus 3 ~~I~l~G~~GsGKsT~a-~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG-RRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHH-HHHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHH
Confidence 46899999999999996 666554
No 298
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=84.48 E-value=0.44 Score=42.76 Aligned_cols=24 Identities=21% Similarity=0.530 Sum_probs=20.4
Q ss_pred cceeeecCCCCCccHHHHHHHHHhc
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
=+++++|++|+|||+| +..+.+..
T Consensus 49 ~~i~vvG~~g~GKSsl-l~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSL-LTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHH-HHHHHHSS
T ss_pred CEEEEECCCCCCHHHH-HHHHhcCC
Confidence 3799999999999999 68877654
No 299
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=84.46 E-value=0.48 Score=43.45 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=21.6
Q ss_pred ccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 159 IGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 159 igrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.-+|-.+.|.|++|+||||++ ..+...
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~-~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQS-RKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHH-HHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHH-HHHHHH
Confidence 456788999999999999995 666653
No 300
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=84.42 E-value=0.93 Score=51.56 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=20.7
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
++...++++|++|||||+++ ..+++.
T Consensus 189 ~~~~~vlL~G~pG~GKT~la-~~la~~ 214 (854)
T 1qvr_A 189 RTKNNPVLIGEPGVGKTAIV-EGLAQR 214 (854)
T ss_dssp SSCCCCEEEECTTSCHHHHH-HHHHHH
T ss_pred CCCCceEEEcCCCCCHHHHH-HHHHHH
Confidence 44557999999999999995 666654
No 301
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=84.38 E-value=0.59 Score=43.64 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=21.6
Q ss_pred CCcceeeecCCCCCccHHHHHHHHH
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
-|.-++|.|++|+||||+|+..+.+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4778999999999999998777764
No 302
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=84.37 E-value=0.37 Score=41.96 Aligned_cols=21 Identities=19% Similarity=0.469 Sum_probs=18.1
Q ss_pred ceeeecCCCCCccHHHHHHHHH
Q psy2894 164 RELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~ 185 (515)
|++++|++|+|||+| +..+.+
T Consensus 4 ki~ivG~~~~GKSsl-i~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTL-AGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHH-HHHHHC
T ss_pred EEEEECCCCCCHHHH-HHHHHh
Confidence 689999999999999 577754
No 303
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=84.35 E-value=0.45 Score=41.84 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=17.9
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.+.|.|++|+||||++ ..++..
T Consensus 3 ~i~l~G~~GsGKsT~~-~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA-AKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHH
Confidence 4789999999999995 666654
No 304
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=84.27 E-value=0.45 Score=42.72 Aligned_cols=23 Identities=17% Similarity=0.523 Sum_probs=19.9
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++|+|++|+|||+| +..+.+..
T Consensus 27 ki~v~G~~~~GKSsL-i~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNL-LSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHH-HHHHHHSC
T ss_pred EEEEECcCCCCHHHH-HHHHhcCC
Confidence 789999999999999 68887753
No 305
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=84.27 E-value=0.46 Score=45.22 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=20.0
Q ss_pred CCcceeeecCCCCCccHHHHHHHH
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIII 184 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~ 184 (515)
.|..++|.|++|+|||+|+++.+-
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 477899999999999999865543
No 306
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=84.17 E-value=2.7 Score=42.56 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=20.0
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
++.-+++|.|.+|+|||||+ ..++.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~-~~L~~ 101 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAI-EALGM 101 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHH-HHHHH
T ss_pred CCceEEEEECCCCCCHHHHH-HHHHH
Confidence 45668999999999999995 55443
No 307
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=84.13 E-value=0.46 Score=42.27 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=19.7
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
|++++|++|+|||+| +..+.+.
T Consensus 9 ki~v~G~~~~GKSsl-i~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSI-VLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHS
T ss_pred EEEEECCCCCCHHHH-HHHHHhC
Confidence 789999999999999 6888765
No 308
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=83.97 E-value=0.52 Score=43.90 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=20.6
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+|-++.|.|++|+||||++ ..++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a-~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQA-PNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHH-HHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHH
Confidence 5678999999999999995 666654
No 309
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=83.91 E-value=0.48 Score=42.76 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=19.7
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
|++|+|++|+|||+| +..+++..
T Consensus 22 ki~ivG~~~vGKSsL-~~~~~~~~ 44 (184)
T 3ihw_A 22 KVGIVGNLSSGKSAL-VHRYLTGT 44 (184)
T ss_dssp EEEEECCTTSCHHHH-HHHHHHSS
T ss_pred EEEEECCCCCCHHHH-HHHHhcCC
Confidence 789999999999999 67777653
No 310
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=83.87 E-value=0.49 Score=41.63 Aligned_cols=23 Identities=17% Similarity=0.450 Sum_probs=19.8
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++++|++|+|||+| +..+.+..
T Consensus 12 ~i~v~G~~~~GKssl-i~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCL-LVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHSC
T ss_pred EEEEECcCCCCHHHH-HHHHHhCC
Confidence 789999999999999 68777654
No 311
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=83.87 E-value=0.25 Score=53.71 Aligned_cols=30 Identities=30% Similarity=0.460 Sum_probs=26.2
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.+-+|+.++|+|++|+||||| +..|...-
T Consensus 362 l~i~~G~~~~ivG~sGsGKSTl-l~~l~g~~ 391 (578)
T 4a82_A 362 LSIEKGETVAFVGMSGGGKSTL-INLIPRFY 391 (578)
T ss_dssp EEECTTCEEEEECSTTSSHHHH-HTTTTTSS
T ss_pred EEECCCCEEEEECCCCChHHHH-HHHHhcCC
Confidence 5889999999999999999999 57777643
No 312
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=83.84 E-value=0.38 Score=43.20 Aligned_cols=21 Identities=19% Similarity=0.673 Sum_probs=18.3
Q ss_pred ceeeecCCCCCccHHHHHHHHH
Q psy2894 164 RELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~ 185 (515)
+++|+|++|+|||+| +..+..
T Consensus 4 kv~ivG~~gvGKStL-l~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTL-LQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHH-HHHHTC
T ss_pred EEEEECCCCCCHHHH-HHHHhc
Confidence 689999999999999 577765
No 313
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=83.74 E-value=0.5 Score=44.14 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=21.0
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+|-++.|.|++|+||||++ ..++..-
T Consensus 4 ~~~~I~l~G~~GsGKsT~a-~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQC-EFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHH-HHHHHHH
T ss_pred CceEEEEECCCCCCHHHHH-HHHHHHh
Confidence 5678999999999999995 6666543
No 314
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=83.70 E-value=0.5 Score=41.87 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=19.2
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
|++|+|++|+|||+| +..+.++
T Consensus 20 ki~v~G~~~~GKSsl-~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSAL-TIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHS
T ss_pred EEEEECCCCCCHHHH-HHHHHhC
Confidence 679999999999999 6777765
No 315
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=83.70 E-value=0.5 Score=41.65 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=19.8
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
|++++|++|+|||+| +..+.+..
T Consensus 20 ki~v~G~~~~GKSsl-i~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSAL-TLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHSC
T ss_pred EEEEECCCCCCHHHH-HHHHhhCC
Confidence 799999999999999 68877653
No 316
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=83.69 E-value=0.47 Score=42.08 Aligned_cols=23 Identities=39% Similarity=0.673 Sum_probs=19.9
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++++|++|+|||+| +..+.+..
T Consensus 12 ki~v~G~~~~GKSsl-i~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCL-LHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHSS
T ss_pred EEEEECCCCCCHHHH-HHHHHcCC
Confidence 789999999999999 68877653
No 317
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=83.67 E-value=0.5 Score=41.58 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=19.3
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
|++++|++|+|||+| +..+...
T Consensus 14 ki~v~G~~~~GKSsl-i~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSL-VLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHH-HHHHHHC
T ss_pred EEEEECcCCCCHHHH-HHHHHcC
Confidence 689999999999999 6777765
No 318
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=83.60 E-value=0.51 Score=41.59 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=20.1
Q ss_pred cceeeecCCCCCccHHHHHHHHHhc
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
=+++++|++|+|||+| +..+.+..
T Consensus 9 ~ki~v~G~~~~GKssl-~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCL-LISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHH-HHHHHHSC
T ss_pred EEEEEECCCCCCHHHH-HHHHhcCC
Confidence 3799999999999999 67777654
No 319
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=83.60 E-value=0.48 Score=41.62 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=21.0
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.-+++++|++|+|||+| +..+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl-~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTL-LDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHH-HHHHHTT
T ss_pred CCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 456899999999999999 6777764
No 320
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=83.55 E-value=0.39 Score=42.68 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.0
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+++++|++|+|||+| +..+.+.
T Consensus 3 ki~v~G~~~~GKSsl-i~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTL-IYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHH-HHHHHSC
T ss_pred EEEEECCCCCCHHHH-HHHHhCc
Confidence 689999999999999 6777754
No 321
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=83.53 E-value=0.51 Score=42.18 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=19.7
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++++|++|+|||+| +..+.+..
T Consensus 23 ki~vvG~~~~GKSsl-i~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSAL-TIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHSS
T ss_pred EEEEECcCCCCHHHH-HHHHHcCC
Confidence 789999999999999 67777653
No 322
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=83.51 E-value=0.51 Score=42.22 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.0
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
|++|+|++|+|||+| +..+.+..
T Consensus 18 ki~v~G~~~~GKSsl-i~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCL-LLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHSC
T ss_pred EEEEECcCCCCHHHH-HHHHHcCC
Confidence 799999999999999 68887753
No 323
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=83.50 E-value=0.35 Score=48.04 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=22.2
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
|+..++|+|++|+||||| ++.+..++
T Consensus 7 r~~~VaIvG~~nvGKSTL-ln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTL-LNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHH-HHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHCCC
Confidence 566899999999999999 68888653
No 324
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=83.49 E-value=0.47 Score=43.43 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.2
Q ss_pred ceeeecCCCCCccHHHHHHHHH
Q psy2894 164 RELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~ 185 (515)
+++|.|++|+||||++ ..++.
T Consensus 3 ~i~i~G~~GsGKSTl~-~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA-QMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCcCHHHHH-HHHHH
Confidence 6899999999999994 77765
No 325
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=83.44 E-value=0.54 Score=42.08 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=18.3
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
++.|.|++|+||||++ ..++..
T Consensus 6 ~i~i~G~~GsGKsTla-~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA-RALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHH-HHHHHH
T ss_pred EEEEEcCCCCCHHHHH-HHHHHH
Confidence 6899999999999996 666544
No 326
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=83.41 E-value=0.52 Score=41.59 Aligned_cols=22 Identities=18% Similarity=0.442 Sum_probs=19.1
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+++++|++|+|||+| +..+.+.
T Consensus 7 ~i~~~G~~~~GKssl-~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCL-LISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHS
T ss_pred EEEEECCCCCCHHHH-HHHHHcC
Confidence 789999999999999 5777754
No 327
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=83.39 E-value=0.52 Score=42.25 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.0
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++|+|++|+|||+| +..+.+..
T Consensus 24 ki~vvG~~~~GKSsl-i~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSF-LFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHSC
T ss_pred EEEEECCCCCCHHHH-HHHHHcCC
Confidence 789999999999999 68887654
No 328
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=83.38 E-value=0.41 Score=42.89 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=20.3
Q ss_pred CcceeeecCCCCCccHHHHHHHHHh
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
--+++++|++|+|||+| +..+.+.
T Consensus 23 ~~~i~v~G~~~~GKSsl-i~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSF-INSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHH-HHHHHTC
T ss_pred CCEEEEECCCCCCHHHH-HHHHhCC
Confidence 35799999999999999 6877754
No 329
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=83.31 E-value=0.48 Score=42.88 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=20.5
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
++..++|.|++|+||||++ ..++..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a-~~L~~~ 35 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC-EKLVEK 35 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH-HHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHHH
Confidence 4678999999999999995 666654
No 330
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=83.29 E-value=0.52 Score=42.50 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=19.8
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++++|++|+|||+| +..+.+..
T Consensus 23 ki~vvG~~~vGKTsL-i~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSAL-TVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHSS
T ss_pred EEEEECCCCCcHHHH-HHHHHhCC
Confidence 789999999999999 67777654
No 331
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=83.19 E-value=0.6 Score=42.76 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=20.5
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.++-.++|.|++|+||||++ ..++..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a-~~La~~ 43 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQA-VKLAEK 43 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHH-HHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH-HHHHHH
Confidence 34567999999999999995 666554
No 332
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=83.19 E-value=1.2 Score=42.44 Aligned_cols=28 Identities=11% Similarity=0.175 Sum_probs=23.6
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.+.+|..+.|.|++|+||||++ ..+...
T Consensus 22 ~~~~g~~i~i~G~~GsGKsT~~-~~l~~~ 49 (229)
T 4eaq_A 22 SNAMSAFITFEGPEGSGKTTVI-NEVYHR 49 (229)
T ss_dssp CCCCCEEEEEECCTTSCHHHHH-HHHHHH
T ss_pred ecCCCeEEEEEcCCCCCHHHHH-HHHHHH
Confidence 4668999999999999999994 766664
No 333
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=83.18 E-value=0.52 Score=42.43 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.0
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
|++|+|++|+|||+| +..+.+..
T Consensus 25 ki~v~G~~~~GKSsl-i~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSF-LFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHT
T ss_pred EEEEECCCCcCHHHH-HHHHhcCC
Confidence 789999999999999 68777654
No 334
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=83.14 E-value=0.81 Score=45.45 Aligned_cols=43 Identities=21% Similarity=0.197 Sum_probs=30.8
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHhc-CCCeEEEEEEecCChHH
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQK-NKNVTCIYVAIGQKISS 204 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~~-~~~~~~V~~~iGer~~e 204 (515)
.+..++|.|++|||||++| ..|.+.. ..+...|++-|+.-..+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA-r~i~~~~~~~~~~~v~v~~~~~~~~ 67 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA-RALHACSARSDRPLVTLNCAALNES 67 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH-HHHHHHSSCSSSCCCEEECSSCCHH
T ss_pred CCCcEEEECCCCchHHHHH-HHHHHhCcccCCCeEEEeCCCCChH
Confidence 3568999999999999995 7777753 22333466777776654
No 335
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=83.14 E-value=0.36 Score=42.39 Aligned_cols=22 Identities=41% Similarity=0.584 Sum_probs=18.9
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
|++++|++|+|||+| +..+.+.
T Consensus 11 ~i~v~G~~~~GKssl-~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSL-LLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHH-HHHHCSC
T ss_pred EEEEECCCCCCHHHH-HHHHhcC
Confidence 789999999999999 6777654
No 336
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=83.13 E-value=0.39 Score=46.82 Aligned_cols=36 Identities=14% Similarity=0.337 Sum_probs=26.7
Q ss_pred cccccc-ccccC---CcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 151 KAIDSI-VPIGK---GQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 151 k~ID~l-~pigr---Gqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
.+++-+ +.+.+ |.++.|+|++|+||||++ ..++..-
T Consensus 33 ~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~-~~La~~l 72 (250)
T 3nwj_A 33 QILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVG-KIMARSL 72 (250)
T ss_dssp HHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHH-HHHHHHH
T ss_pred hhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHH-HHHHHhc
Confidence 444433 35566 999999999999999994 6666543
No 337
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=83.08 E-value=1.3 Score=46.65 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=20.9
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.+...++|+|++|||||+++ ..+++.
T Consensus 199 ~~~~~~LL~G~pG~GKT~la-~~la~~ 224 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIA-EGLAQQ 224 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHH-HHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHH-HHHHHH
Confidence 44567899999999999995 666654
No 338
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=83.03 E-value=0.41 Score=42.25 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=19.9
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
|++++|++|+|||+| +..+.++.
T Consensus 9 ki~~vG~~~vGKTsl-i~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDARSGKSSL-IHRFLTGS 31 (178)
T ss_dssp EEEEECCGGGCHHHH-HHHHHHSC
T ss_pred EEEEECCCCCCHHHH-HHHHHhCC
Confidence 789999999999999 67777654
No 339
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=82.97 E-value=0.48 Score=44.77 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.2
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
|++|+|++|+|||+| +..+....
T Consensus 31 ~i~lvG~~g~GKStl-in~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSAT-GNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHH-HHHHHTSC
T ss_pred EEEEECCCCCCHHHH-HHHHcCCC
Confidence 789999999999999 68888654
No 340
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=82.91 E-value=0.51 Score=42.58 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=19.9
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
|++|+|++|+|||+| +..+.+..
T Consensus 25 ki~vvG~~~~GKSsl-i~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSI-VCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHH-HHHHHHCC
T ss_pred EEEEECcCCCCHHHH-HHHHhcCC
Confidence 789999999999999 68887654
No 341
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=82.85 E-value=0.53 Score=42.08 Aligned_cols=23 Identities=22% Similarity=0.608 Sum_probs=19.7
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
|++++|++|+|||+| +..+.+..
T Consensus 9 ki~v~G~~~vGKSsl-i~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTAL-LHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHSC
T ss_pred EEEEECCCCCCHHHH-HHHHhcCC
Confidence 689999999999999 67777653
No 342
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=82.82 E-value=0.55 Score=42.55 Aligned_cols=26 Identities=23% Similarity=0.533 Sum_probs=20.5
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.-+++++|++|+|||+| +..+.+..
T Consensus 22 ~~~ki~~vG~~~vGKSsl-i~~l~~~~ 47 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTL-LHMLKNDR 47 (190)
T ss_dssp --CEEEEEESTTSSHHHH-HHHHHHSC
T ss_pred CccEEEEECCCCCCHHHH-HHHHhcCC
Confidence 344899999999999999 67777643
No 343
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=82.81 E-value=0.58 Score=42.61 Aligned_cols=25 Identities=32% Similarity=0.284 Sum_probs=20.8
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+|..+.|.|++|+||||++ ..++..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~-~~L~~~ 27 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA-TLLKDW 27 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH-HHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH-HHHHHH
Confidence 4678999999999999995 666654
No 344
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=82.81 E-value=0.56 Score=42.30 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=19.6
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++|+|++|+|||+| +..+.+..
T Consensus 16 ki~v~G~~~~GKSsl-i~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSAL-TLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHSC
T ss_pred EEEEECCCCCCHHHH-HHHHHhCC
Confidence 689999999999999 67777643
No 345
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=82.80 E-value=0.49 Score=41.05 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=17.9
Q ss_pred ceeeecCCCCCccHHHHHHHHH
Q psy2894 164 RELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~ 185 (515)
|++++|++|+|||+| +..+.+
T Consensus 4 ki~~vG~~~~GKSsl-i~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSAL-ARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHH-HHHHCC
T ss_pred EEEEECCCCCCHHHH-HHHHcC
Confidence 689999999999999 566654
No 346
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=82.79 E-value=0.56 Score=42.03 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=19.8
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++++|++|+|||+| +..+.+..
T Consensus 22 ki~v~G~~~~GKSsl-i~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCL-TYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHSS
T ss_pred EEEEECCCCCCHHHH-HHHHHcCC
Confidence 789999999999999 68877653
No 347
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=82.79 E-value=0.56 Score=42.45 Aligned_cols=23 Identities=35% Similarity=0.732 Sum_probs=20.0
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++|+|++|+|||+| +..+.+..
T Consensus 10 ki~v~G~~~~GKSsl-i~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSL-MNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHSC
T ss_pred EEEEECcCCCCHHHH-HHHHHcCC
Confidence 789999999999999 68887654
No 348
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=82.78 E-value=0.57 Score=41.52 Aligned_cols=21 Identities=38% Similarity=0.336 Sum_probs=17.5
Q ss_pred ceeeecCCCCCccHHHHHHHHH
Q psy2894 164 RELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~ 185 (515)
.+.|.|++|+||||++ ..+..
T Consensus 4 ~I~i~G~~GsGKST~a-~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA-REFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHH-HHHHH
T ss_pred EEEEecCCCCCHHHHH-HHHHh
Confidence 4789999999999996 66665
No 349
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=82.74 E-value=0.68 Score=42.00 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=19.9
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+...++|.|++|+||||++ ..++..
T Consensus 7 ~~~~I~i~G~~GsGKST~~-~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVA-ALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHH-HHHHHT
T ss_pred CceEEEEECCCCCCHHHHH-HHHHHC
Confidence 3456899999999999995 666654
No 350
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=82.73 E-value=0.57 Score=42.10 Aligned_cols=23 Identities=17% Similarity=0.478 Sum_probs=19.9
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++++|++|+|||+| +..+.+..
T Consensus 24 ki~v~G~~~~GKSsl-i~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTF-VNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHSC
T ss_pred EEEEECCCCCCHHHH-HHHHHcCC
Confidence 689999999999999 68887654
No 351
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=82.72 E-value=1.1 Score=43.97 Aligned_cols=34 Identities=44% Similarity=0.576 Sum_probs=25.3
Q ss_pred cceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEec
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIG 199 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iG 199 (515)
+-+.|.|++|+|||+|+ ..+.+..... ++|+-+.
T Consensus 31 ~~v~i~G~~G~GKT~L~-~~~~~~~~~~--~~~~~~~ 64 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII-KIGINELNLP--YIYLDLR 64 (357)
T ss_dssp SEEEEEESTTSSHHHHH-HHHHHHHTCC--EEEEEGG
T ss_pred CcEEEECCCCCCHHHHH-HHHHHhcCCC--EEEEEch
Confidence 48899999999999994 6666654444 4666654
No 352
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=82.64 E-value=0.55 Score=41.52 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=19.1
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+++++|++|+|||+| +..+.+.
T Consensus 8 ki~~~G~~~~GKSsl-i~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSL-TIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHS
T ss_pred EEEEECcCCCCHHHH-HHHHHcC
Confidence 789999999999999 6777754
No 353
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=82.61 E-value=0.69 Score=42.26 Aligned_cols=26 Identities=12% Similarity=0.302 Sum_probs=20.2
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+...++|.|++|+||||++ ..++..-
T Consensus 14 ~~~~I~l~G~~GsGKsT~~-~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQC-EKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHH-HHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHHc
Confidence 3456899999999999995 6666543
No 354
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=82.58 E-value=0.53 Score=50.86 Aligned_cols=30 Identities=27% Similarity=0.312 Sum_probs=24.5
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHhcCCC
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQKNKN 190 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~~~~~ 190 (515)
.+|.-++++|++|||||+|+ ..|++..+..
T Consensus 106 ~~g~~vll~Gp~GtGKTtla-r~ia~~l~~~ 135 (543)
T 3m6a_A 106 LKGPILCLAGPPGVGKTSLA-KSIAKSLGRK 135 (543)
T ss_dssp CCSCEEEEESSSSSSHHHHH-HHHHHHHTCE
T ss_pred CCCCEEEEECCCCCCHHHHH-HHHHHhcCCC
Confidence 38999999999999999995 7777655433
No 355
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=82.54 E-value=0.9 Score=46.06 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=22.2
Q ss_pred CcceeeecCCCCCccHHHHHHHHHhcCCC
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQKNKN 190 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~~~~~ 190 (515)
...+++.|++|||||++| ..+++..+..
T Consensus 72 ~~~ill~Gp~GtGKT~la-~~la~~l~~~ 99 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA-QTLAKHLDIP 99 (376)
T ss_dssp CCCEEEECCTTSSHHHHH-HHHHHHTTCC
T ss_pred CCCEEEECCCCCCHHHHH-HHHHHHhCCC
Confidence 457999999999999995 7777765443
No 356
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=82.51 E-value=0.42 Score=50.16 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.2
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.++|+|++|+||||| +.+|...
T Consensus 71 ~valvG~nGaGKSTL-ln~L~Gl 92 (413)
T 1tq4_A 71 NVAVTGETGSGKSSF-INTLRGI 92 (413)
T ss_dssp EEEEEECTTSSHHHH-HHHHHTC
T ss_pred EEEEECCCCCcHHHH-HHHHhCC
Confidence 999999999999999 7888873
No 357
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=82.51 E-value=1.2 Score=40.16 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=17.4
Q ss_pred eeeecCCCCCccHHHHHHHHHh
Q psy2894 165 ELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 165 ~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
++|.|++|+||||++ ..+...
T Consensus 3 I~l~G~~GsGKsT~~-~~L~~~ 23 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI-QLLAQY 23 (197)
T ss_dssp EEEECSTTSSHHHHH-HHHHHH
T ss_pred EEEECCCCCCHHHHH-HHHHHH
Confidence 789999999999995 666654
No 358
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=82.49 E-value=0.69 Score=41.77 Aligned_cols=28 Identities=29% Similarity=0.325 Sum_probs=22.2
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
..-+|..+.|.|.+|+||||++ ..++..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~-~~L~~~ 36 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIA-TRLADL 36 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHH-HHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHH-HHHHHH
Confidence 3447888999999999999995 666553
No 359
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=82.43 E-value=0.6 Score=42.05 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=20.1
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
|++++|++|+|||+| +..+.+..
T Consensus 25 ki~~vG~~~~GKSsl-~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCL-LLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHSC
T ss_pred EEEEECcCCCCHHHH-HHHHhcCC
Confidence 799999999999999 68887754
No 360
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=82.37 E-value=0.43 Score=41.73 Aligned_cols=25 Identities=8% Similarity=0.189 Sum_probs=19.6
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.+..++|.|++|||||++| ..|.+.
T Consensus 26 ~~~~vll~G~~GtGKt~lA-~~i~~~ 50 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVA-RYFHKN 50 (143)
T ss_dssp CSSCEEEEEETTCCHHHHH-GGGCCT
T ss_pred CCCcEEEECCCCccHHHHH-HHHHHh
Confidence 3567999999999999996 555543
No 361
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=82.24 E-value=0.61 Score=41.55 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.0
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++++|++|+|||+| +..+.+..
T Consensus 17 ~i~v~G~~~~GKssl-i~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSL-LLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHSC
T ss_pred EEEEECCCCCCHHHH-HHHHHcCC
Confidence 789999999999999 68877653
No 362
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=82.23 E-value=4.4 Score=38.69 Aligned_cols=94 Identities=14% Similarity=0.110 Sum_probs=47.4
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHhc-CC----CeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHh
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQK-NK----NVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASM 234 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~~-~~----~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~ 234 (515)
-+|--+.|.|++|+||||++ ..+...- .. +..++ ..--.++.+..+.++.+...+. ..|
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~-~~l~~~l~~~~~~~g~~v~-~~rep~~t~~g~~ir~~l~~~~------------~~~-- 86 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHL-QWFCDRLQERLGPAGRHVV-VTREPGGTRLGETLREILLNQP------------MDL-- 86 (227)
T ss_dssp CCCCEEEEECCC---CHHHH-HHHHHHHHHHHGGGTCCEE-EEESSSSSHHHHHHHHHHHHSC------------CCH--
T ss_pred cCCeEEEEECCCCCCHHHHH-HHHHHHHHhhccccceeee-eecCCCCChHHHHHHHHHHcCC------------CCH--
Confidence 47889999999999999995 6665431 11 32222 2222234455565665543331 111
Q ss_pred hHHHHhhhhhhHHHHH-------HcCCcEEEEEechhHHHHHHH
Q psy2894 235 QFISAYSGCTIGEYFR-------DHGKDALVVYDDLSKQAVAYR 271 (515)
Q Consensus 235 r~~a~~~a~~iAE~fr-------d~G~~Vlli~Dsltr~a~A~r 271 (515)
+..+.+.+...++.+. .+|+ .||+|--..-..||.
T Consensus 87 ~~~~llf~a~R~~~~~~~i~p~l~~g~--~VI~DRy~~S~~ayq 128 (227)
T 3v9p_A 87 ETEALLMFAGRREHLALVIEPALARGD--WVVSDRFTDATFAYQ 128 (227)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHTTC--EEEEECCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC--EEEEeccHhHHHHHh
Confidence 1112222334444432 3465 667787766666665
No 363
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=82.23 E-value=0.61 Score=42.15 Aligned_cols=40 Identities=20% Similarity=0.250 Sum_probs=21.4
Q ss_pred cccccccccccccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 146 LQTGIKAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 146 l~TGik~ID~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.||-..+..|.+. +-=+++++|++|+|||+| +..+.+..
T Consensus 13 ~~~~~~~~~~~~~~-~~~ki~v~G~~~vGKSsl-i~~l~~~~ 52 (196)
T 2atv_A 13 LGTENLYFQSMAKS-AEVKLAIFGRAGVGKSAL-VVRFLTKR 52 (196)
T ss_dssp ---------------CCEEEEEECCTTSSHHHH-HHHHHHSC
T ss_pred CCccccchhccCCC-CceEEEEECCCCCCHHHH-HHHHHhCC
Confidence 33444445554432 345899999999999999 68887653
No 364
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=82.21 E-value=0.62 Score=41.92 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.0
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
|++|+|++|+|||+| +..+.+..
T Consensus 23 ki~v~G~~~~GKSsl-i~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCL-LLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHH-HHHHHHSC
T ss_pred EEEEECcCCCCHHHH-HHHHhcCC
Confidence 789999999999999 68877654
No 365
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=82.19 E-value=0.69 Score=49.69 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=26.6
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEe
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAI 198 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~i 198 (515)
-.|..++|.|+||||||+|| ..|++....+...++..+
T Consensus 39 ~~~~~VLL~GpPGtGKT~LA-raLa~~l~~~~~f~~~~~ 76 (500)
T 3nbx_X 39 LSGESVFLLGPPGIAKSLIA-RRLKFAFQNARAFEYLMT 76 (500)
T ss_dssp HHTCEEEEECCSSSSHHHHH-HHGGGGBSSCCEEEEECC
T ss_pred hcCCeeEeecCchHHHHHHH-HHHHHHHhhhhHHHHHHH
Confidence 34678999999999999995 777776544332333333
No 366
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=82.09 E-value=0.89 Score=40.82 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=21.4
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
.+|..+.|.|.+|+||||++ ..+...-
T Consensus 3 ~~~~~I~l~G~~GsGKST~~-~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLS-QALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHH-HHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH-HHHHHHc
Confidence 35678999999999999995 6666543
No 367
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=82.05 E-value=0.42 Score=57.23 Aligned_cols=30 Identities=20% Similarity=0.393 Sum_probs=26.6
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.|-+||+++|+|++|+||||| +..+.+--
T Consensus 1100 l~I~~Ge~vaIVG~SGsGKSTL-~~lL~rl~ 1129 (1321)
T 4f4c_A 1100 FSVEPGQTLALVGPSGCGKSTV-VALLERFY 1129 (1321)
T ss_dssp EEECTTCEEEEECSTTSSTTSH-HHHHTTSS
T ss_pred EEECCCCEEEEECCCCChHHHH-HHHHhcCc
Confidence 5889999999999999999999 68888753
No 368
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=81.98 E-value=0.6 Score=42.86 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=17.5
Q ss_pred ceeeecCCCCCccHHHHHHHHH
Q psy2894 164 RELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~ 185 (515)
.++|.|++|+||||++ ..++.
T Consensus 4 ~i~l~G~~GsGKST~~-~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA-NLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHH-HHHHT
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 4799999999999994 66654
No 369
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=81.96 E-value=0.53 Score=51.32 Aligned_cols=36 Identities=17% Similarity=0.462 Sum_probs=28.7
Q ss_pred ccccc-ccccCCcceeeecCCCCCccHHHHHHHHHhcC
Q psy2894 152 AIDSI-VPIGKGQRELIIGDRQTGKSSIAIDIIINQKN 188 (515)
Q Consensus 152 ~ID~l-~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~ 188 (515)
+++.+ +.+-+|+.++|+|++|+||||| +..|...-.
T Consensus 358 ~l~~isl~i~~Ge~~~ivG~sGsGKSTl-l~~l~g~~~ 394 (587)
T 3qf4_A 358 VLSGVNFSVKPGSLVAVLGETGSGKSTL-MNLIPRLID 394 (587)
T ss_dssp SEEEEEEEECTTCEEEEECSSSSSHHHH-HHTTTTSSC
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHH-HHHHhCCcc
Confidence 34333 5889999999999999999999 587776543
No 370
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=81.93 E-value=0.6 Score=42.47 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=20.7
Q ss_pred cceeeecCCCCCccHHHHHHHHHhc
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
=|++|+|++|+|||+| +..+.+..
T Consensus 25 ~ki~vvG~~~~GKSsl-i~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSL-AHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHH-HHHHHHSC
T ss_pred EEEEEECCCCcCHHHH-HHHHHhCC
Confidence 4899999999999999 68888754
No 371
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=81.91 E-value=0.63 Score=42.23 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=19.8
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++|+|++|+|||+| +..+.+..
T Consensus 30 ki~v~G~~~~GKSsl-i~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSF-LMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHH-HHHHHHCC
T ss_pred EEEEECcCCCCHHHH-HHHHHhCC
Confidence 789999999999999 67777654
No 372
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=81.83 E-value=0.96 Score=51.41 Aligned_cols=58 Identities=24% Similarity=0.261 Sum_probs=36.6
Q ss_pred ceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEe--------cCChHHHHHHHHHHhhcCCCCcEEEEEeC
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAI--------GQKISSIKKTANLLEKYGAMPYTIIVAAT 227 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~i--------Ger~~ev~~~~~~l~~~~~~~~t~vv~~t 227 (515)
-+++.||||||||+|| ..+++..+.. ++++-+ |+....++++.+... ....++++.--
T Consensus 240 GILL~GPPGTGKT~LA-raiA~elg~~--~~~v~~~~l~sk~~gese~~lr~lF~~A~---~~~PsIIfIDE 305 (806)
T 3cf2_A 240 GILLYGPPGTGKTLIA-RAVANETGAF--FFLINGPEIMSKLAGESESNLRKAFEEAE---KNAPAIIFIDE 305 (806)
T ss_dssp EEEEECCTTSCHHHHH-HHHHTTTTCE--EEEEEHHHHHSSCTTHHHHHHHHHHHHHT---TSCSEEEEEES
T ss_pred eEEEECCCCCCHHHHH-HHHHHHhCCe--EEEEEhHHhhcccchHHHHHHHHHHHHHH---HcCCeEEEEeh
Confidence 3899999999999995 8888766544 344432 444444444444433 34467777543
No 373
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=81.83 E-value=0.72 Score=41.95 Aligned_cols=22 Identities=32% Similarity=0.637 Sum_probs=18.6
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
++.|+|++|+|||+| +..+...
T Consensus 8 kv~lvG~~~vGKSsL-~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTL-ANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHhcC
Confidence 789999999999999 5676643
No 374
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=81.78 E-value=0.58 Score=42.40 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=19.8
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
|++|+|++|+|||+| +..+.+..
T Consensus 10 ki~v~G~~~~GKSsl-i~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSF-LFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHH-HHHHHTCC
T ss_pred EEEEECCCCCCHHHH-HHHHhcCC
Confidence 789999999999999 67777653
No 375
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=81.72 E-value=0.74 Score=43.47 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=20.7
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
++.++.|.|++|+||||++ ..++..-
T Consensus 15 ~~~~I~l~G~~GsGKsT~a-~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQA-PKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHH-HHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHh
Confidence 3567999999999999995 6666543
No 376
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=81.72 E-value=2.8 Score=41.83 Aligned_cols=104 Identities=14% Similarity=0.056 Sum_probs=50.2
Q ss_pred eeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCCCcEEEEEeCC---CCCHHhhHHHHhh
Q psy2894 165 ELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEKYGAMPYTIIVAATA---SDSASMQFISAYS 241 (515)
Q Consensus 165 ~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~---~~~~~~r~~a~~~ 241 (515)
.++.|++|+|||+++ ..+++.-......-...||+-.. ...+......+- ...... ++-...+.+..
T Consensus 27 ~L~~G~~G~GKt~~a-~~la~~l~~~~~~~~~~c~~c~~-----c~~~~~~~~~d~--~~~~~~~~~~~~~i~~ir~l-- 96 (334)
T 1a5t_A 27 LLIQALPGMGDDALI-YALSRYLLCQQPQGHKSCGHCRG-----CQLMQAGTHPDY--YTLAPEKGKNTLGVDAVREV-- 96 (334)
T ss_dssp EEEECCTTSCHHHHH-HHHHHHHTCSSCBTTBCCSCSHH-----HHHHHHTCCTTE--EEECCCTTCSSBCHHHHHHH--
T ss_pred EEEECCCCchHHHHH-HHHHHHHhCCCCCCCCCCCCCHH-----HHHHhcCCCCCE--EEEeccccCCCCCHHHHHHH--
Confidence 889999999999996 55555321100000123444332 222222222232 222221 22223333221
Q ss_pred hhhhHHHHH---HcCCcEEEEEechhHHH-HHHHHHHHhcCCCCC
Q psy2894 242 GCTIGEYFR---DHGKDALVVYDDLSKQA-VAYRQISLLLKRPPG 282 (515)
Q Consensus 242 a~~iAE~fr---d~G~~Vlli~Dsltr~a-~A~reisl~l~~pp~ 282 (515)
-+.+. ..|...++|+|+.-++. .|.+.+-..+.+||.
T Consensus 97 ----~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~ 137 (334)
T 1a5t_A 97 ----TEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPA 137 (334)
T ss_dssp ----HHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCT
T ss_pred ----HHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCC
Confidence 12221 24667778888766543 455556666888874
No 377
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=81.63 E-value=0.65 Score=42.62 Aligned_cols=24 Identities=21% Similarity=0.530 Sum_probs=20.3
Q ss_pred cceeeecCCCCCccHHHHHHHHHhc
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
-+++++|++|+|||+| +..+.+..
T Consensus 13 ~~i~~~G~~g~GKTsl-~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSL-LTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHH-HHHHHHSS
T ss_pred CEEEEECCCCCCHHHH-HHHHhcCC
Confidence 3789999999999999 67777654
No 378
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=81.48 E-value=0.71 Score=48.44 Aligned_cols=34 Identities=15% Similarity=0.181 Sum_probs=26.5
Q ss_pred cccccccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 152 AIDSIVPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 152 ~ID~l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++.++ .-+|+-++|+|+.|+||||+ +..|+..-
T Consensus 158 ~L~~l~-~~~ggii~I~GpnGSGKTTl-L~allg~l 191 (418)
T 1p9r_A 158 NFRRLI-KRPHGIILVTGPTGSGKSTT-LYAGLQEL 191 (418)
T ss_dssp HHHHHH-TSSSEEEEEECSTTSCHHHH-HHHHHHHH
T ss_pred HHHHHH-HhcCCeEEEECCCCCCHHHH-HHHHHhhc
Confidence 444443 36899999999999999999 67777653
No 379
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=81.33 E-value=0.74 Score=41.24 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=20.4
Q ss_pred cceeeecCCCCCccHHHHHHHHHhc
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
=+++++|++|+|||+| +..+.+..
T Consensus 9 ~ki~vvG~~~~GKSsl-i~~l~~~~ 32 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSL-VLRFVKGT 32 (199)
T ss_dssp EEEEEEECTTSSHHHH-HHHHHHSC
T ss_pred eEEEEECCCCCcHHHH-HHHHHcCC
Confidence 4899999999999999 68877643
No 380
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=81.33 E-value=0.6 Score=50.56 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=23.2
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
..-+|+..+|+|+.|+||||| +.+|..
T Consensus 21 ~~~~Gei~gLiGpNGaGKSTL-lkiL~G 47 (538)
T 3ozx_A 21 TPKNNTILGVLGKNGVGKTTV-LKILAG 47 (538)
T ss_dssp CCCTTEEEEEECCTTSSHHHH-HHHHTT
T ss_pred CCCCCCEEEEECCCCCcHHHH-HHHHhc
Confidence 345899999999999999999 677765
No 381
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=81.27 E-value=0.74 Score=42.91 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=20.3
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
++..+.|.|++|+||||++ ..++..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~-~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQC-ELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHH-HHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHH
Confidence 4568999999999999995 666654
No 382
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=81.24 E-value=0.71 Score=41.04 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=18.7
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
|++++|++|+|||+| +..+.+.
T Consensus 16 ki~vvG~~~~GKssL-~~~l~~~ 37 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTN-LKWIYSK 37 (198)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHT
T ss_pred EEEEECCCCCCHHHH-HHHHHhh
Confidence 789999999999999 4777654
No 383
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=81.20 E-value=0.53 Score=41.94 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=21.2
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.=+++++|++|+|||+| +..+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl-~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTI-LKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHH-HHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHH-HHHHhcCC
Confidence 345899999999999999 67777644
No 384
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=81.16 E-value=0.49 Score=41.93 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=9.5
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+++|+|++|+|||+| +..+.+.
T Consensus 10 ki~v~G~~~~GKssl-~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCV-LFRFSED 31 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHH-HHHHHhC
Confidence 789999999999999 5666543
No 385
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=81.12 E-value=0.61 Score=44.74 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=20.8
Q ss_pred cceeeecCCCCCccHHHHHHHHHhc
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
=|++++|.+|+|||+| ++.|..++
T Consensus 22 l~I~lvG~~g~GKSSl-in~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSAT-GNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHH-HHHHHTSC
T ss_pred eEEEEECCCCCcHHHH-HHHHhCCC
Confidence 3789999999999999 68888754
No 386
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=81.06 E-value=1 Score=51.22 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=23.8
Q ss_pred CcceeeecCCCCCccHHHHHHHHHhcCCCe
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQKNKNV 191 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~~~~~~ 191 (515)
...++++||||||||.+| ..+++..+.++
T Consensus 511 ~~gvLl~GPPGtGKT~lA-kaiA~e~~~~f 539 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLA-KAIANECQANF 539 (806)
T ss_dssp CSCCEEESSTTSSHHHHH-HHHHHTTTCEE
T ss_pred CceEEEecCCCCCchHHH-HHHHHHhCCce
Confidence 345899999999999995 88888776664
No 387
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=81.05 E-value=0.79 Score=43.04 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=18.6
Q ss_pred eeeecCCCCCccHHHHHHHHHh
Q psy2894 165 ELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 165 ~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.+|.|++|+|||++|+.++...
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 5799999999999998776554
No 388
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=81.01 E-value=0.66 Score=42.16 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=19.8
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++++|++|+|||+| +..+.+..
T Consensus 10 ki~v~G~~~~GKSsl-i~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCL-LLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHCC
T ss_pred EEEEECCCCCCHHHH-HHHHhcCC
Confidence 789999999999999 68877643
No 389
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=80.97 E-value=2.8 Score=48.40 Aligned_cols=30 Identities=27% Similarity=0.229 Sum_probs=25.6
Q ss_pred ccccccccCCcceeeecCCCCCccHHHHHHH
Q psy2894 153 IDSIVPIGKGQRELIIGDRQTGKSSIAIDII 183 (515)
Q Consensus 153 ID~l~pigrGqr~~I~g~~g~GKt~l~~~~i 183 (515)
-|.-+.+.+|+-.+|+||.|+||||+ |.++
T Consensus 653 ndisl~~~~g~i~~ItGpNGsGKSTl-Lr~i 682 (934)
T 3thx_A 653 NDVYFEKDKQMFHIITGPNMGGKSTY-IRQT 682 (934)
T ss_dssp EEEEEETTTBCEEEEECCTTSSHHHH-HHHH
T ss_pred ccceeecCCCeEEEEECCCCCCHHHH-HHHH
Confidence 36666788999999999999999999 5666
No 390
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=80.91 E-value=0.55 Score=41.84 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=19.6
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
|++++|++|+|||+| +..+.+..
T Consensus 23 ~i~v~G~~~~GKSsl-i~~l~~~~ 45 (181)
T 2h17_A 23 KVIIVGLDNAGKTTI-LYQFSMNE 45 (181)
T ss_dssp EEEEEEETTSSHHHH-HHHHHTTS
T ss_pred EEEEECCCCCCHHHH-HHHHhcCC
Confidence 789999999999999 67777643
No 391
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=80.85 E-value=0.73 Score=45.76 Aligned_cols=25 Identities=20% Similarity=0.011 Sum_probs=20.8
Q ss_pred ccCCcceeeecCCCCCccHHHHHHHH
Q psy2894 159 IGKGQRELIIGDRQTGKSSIAIDIII 184 (515)
Q Consensus 159 igrGqr~~I~g~~g~GKt~l~~~~i~ 184 (515)
-+++..++|.|++|+|||||+ ..|.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla-~~L~ 52 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTS-IQIY 52 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHH-HHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH-HHHH
Confidence 467889999999999999996 4444
No 392
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=80.85 E-value=0.64 Score=41.58 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=20.1
Q ss_pred CcceeeecCCCCCccHHHHHHHHHh
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
-=+++++|++|+|||+| +..+.+.
T Consensus 16 ~~~i~v~G~~~~GKssl-~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTI-LYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHH-HHHHHTT
T ss_pred ccEEEEECCCCCCHHHH-HHHHhcC
Confidence 34789999999999999 6777754
No 393
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=80.76 E-value=0.58 Score=42.67 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=18.7
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
|++|+|++|+|||+| +..+.+.
T Consensus 27 ki~v~G~~~~GKSsL-i~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCL-LHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHH-HHHHHC-
T ss_pred EEEEECcCCCCHHHH-HHHHHhC
Confidence 789999999999999 6777654
No 394
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=80.65 E-value=0.74 Score=41.82 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=19.7
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++|+|++|+|||+| +..+....
T Consensus 22 ~i~v~G~~~~GKSsl-i~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCL-LVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHCC
T ss_pred EEEEECCCCCCHHHH-HHHHHhCC
Confidence 789999999999999 67777643
No 395
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=80.64 E-value=0.8 Score=41.41 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=18.6
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
.+.|.|++|+||||++ ..++..-
T Consensus 2 ~I~i~G~~GsGKsT~~-~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS-AEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHH-HHHHHHH
T ss_pred EEEEECCCccCHHHHH-HHHHHhc
Confidence 5789999999999995 6666543
No 396
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=80.58 E-value=0.91 Score=40.53 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=21.6
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc-CCCeEEEEE
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK-NKNVTCIYV 196 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~-~~~~~~V~~ 196 (515)
.+.|.|++|+||||++ ..+...- ..+..+.++
T Consensus 3 ~I~i~G~~GsGKsT~~-~~L~~~l~~~g~~~~~~ 35 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL-AKVKEILDNQGINNKII 35 (194)
T ss_dssp EEEEEECTTSCHHHHH-HHHHHHHHTTTCCEEEE
T ss_pred EEEEECCCCCCHHHHH-HHHHHHHHhcCceEEEE
Confidence 4789999999999995 6665532 233334444
No 397
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=80.57 E-value=0.7 Score=42.56 Aligned_cols=23 Identities=17% Similarity=0.413 Sum_probs=19.8
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++|+|++|+|||+| +..+.+..
T Consensus 28 ki~lvG~~~vGKSsL-i~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCL-VRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHSS
T ss_pred EEEEECcCCCCHHHH-HHHHHhCC
Confidence 789999999999999 67777653
No 398
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=80.57 E-value=0.99 Score=39.69 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=18.1
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+++|.|.+|+||||++ ..+...
T Consensus 2 ~I~l~G~~GsGKsT~a-~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG-SLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHH-HHHHHH
T ss_pred eEEEECCCCCCHHHHH-HHHHHH
Confidence 5899999999999995 666554
No 399
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=80.57 E-value=0.75 Score=43.33 Aligned_cols=32 Identities=19% Similarity=0.362 Sum_probs=23.3
Q ss_pred ceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecC
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQ 200 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGe 200 (515)
++.|+||||+||+|.| ..|+..- + ++++.+|.
T Consensus 2 ~Iil~GpPGsGKgTqa-~~La~~~--g--~~~istGd 33 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQA-KRLAKEK--G--FVHISTGD 33 (206)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHHH--C--CEEEEHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHH--C--CeEEcHHH
Confidence 4789999999999996 5565432 2 46677774
No 400
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=80.55 E-value=0.75 Score=42.06 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=19.7
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++++|++|+|||+| +..+.+..
T Consensus 9 ki~vvG~~~~GKTsl-i~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLL-FVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHSC
T ss_pred EEEEECCCCCCHHHH-HHHHhCCC
Confidence 789999999999999 67777653
No 401
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=80.51 E-value=5.9 Score=37.23 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=31.3
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHh-cCCCeEEEEEEecC-ChHHHHHHHHHHhhc
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQ-KNKNVTCIYVAIGQ-KISSIKKTANLLEKY 215 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~-~~~~~~~V~~~iGe-r~~ev~~~~~~l~~~ 215 (515)
+|--+.|.|++|+||||++ ..+... ...+..++ ...+ .+.++.+.++.+...
T Consensus 5 ~g~~i~~eG~~gsGKsT~~-~~l~~~l~~~~~~v~--~~~~p~~~~~g~~i~~~l~~ 58 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNR-DYLAERLRERGIEVQ--LTREPGGTPLAERIRELLLA 58 (213)
T ss_dssp CCEEEEEECSTTSSHHHHH-HHHHHHHHTTTCCEE--EEESSCSSHHHHHHHHHHHS
T ss_pred CceEEEEEcCCCCCHHHHH-HHHHHHHHHcCCCcc--cccCCCCCHHHHHHHHHHhc
Confidence 5778899999999999995 666553 22333222 2222 234555556655433
No 402
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=80.47 E-value=0.79 Score=41.07 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=17.9
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.++|.|++|+||||++ ..+...
T Consensus 2 ~I~l~G~~GsGKsT~~-~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA-KKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHH
Confidence 4789999999999995 666653
No 403
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=80.45 E-value=0.77 Score=43.91 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=20.2
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
++=+++|+|++|+||||++ ..++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a-~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQS-LNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHH-HHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHH
Confidence 4568999999999999995 666543
No 404
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=80.39 E-value=0.51 Score=42.33 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=18.8
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
|++|+|++|+|||+| +..+.++
T Consensus 19 ki~v~G~~~~GKSsl-~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTI-INQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHH-HHHHSCC
T ss_pred EEEEECCCCCCHHHH-HHHHhcC
Confidence 689999999999999 5777654
No 405
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=80.33 E-value=0.71 Score=48.18 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=23.6
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
-+..|.+++|+|.+++||||| +..+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL-~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTF-FNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHH-HHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHH-HHHHHCC
Confidence 456789999999999999999 6888765
No 406
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=80.19 E-value=0.66 Score=44.41 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=19.4
Q ss_pred ccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 159 IGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 159 igrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
+.+.-.++|.||||||||+++ ..+++
T Consensus 55 iPkkn~ili~GPPGtGKTt~a-~ala~ 80 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFG-MSFIH 80 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHH-HHHHH
T ss_pred CCcccEEEEECCCCCCHHHHH-HHHHH
Confidence 334445999999999999997 44444
No 407
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=80.19 E-value=0.82 Score=40.36 Aligned_cols=23 Identities=13% Similarity=0.380 Sum_probs=18.5
Q ss_pred cceeeecCCCCCccHHHHHHHHHh
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
..++|.|++|+||||++ ..+...
T Consensus 3 ~~I~l~G~~GsGKsT~a-~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG-RELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHH-HHHHHH
T ss_pred ceEEEECCCCCCHHHHH-HHHHHH
Confidence 36899999999999995 666554
No 408
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=80.18 E-value=0.86 Score=43.09 Aligned_cols=26 Identities=35% Similarity=0.385 Sum_probs=21.4
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.+|.+++|.|++|+||||++ ..++..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~-~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVA-KIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHH-HHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHH-HHHHHH
Confidence 36789999999999999994 666653
No 409
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=80.18 E-value=1 Score=51.16 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=25.0
Q ss_pred ccCCcceeeecCCCCCccHHHHHHHHHhcCCC
Q psy2894 159 IGKGQRELIIGDRQTGKSSIAIDIIINQKNKN 190 (515)
Q Consensus 159 igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~ 190 (515)
+-.|..++|.|++|||||+|+ ..|++..+..
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLa-rala~~l~~~ 265 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIA-RAVANETGAF 265 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHH-HHHHHTTTCE
T ss_pred CCCCCeEEEECcCCCCHHHHH-HHHHHHcCCc
Confidence 567889999999999999995 7777665433
No 410
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=80.13 E-value=1.1 Score=41.88 Aligned_cols=43 Identities=26% Similarity=0.244 Sum_probs=28.7
Q ss_pred ccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEE--EecCC
Q psy2894 159 IGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYV--AIGQK 201 (515)
Q Consensus 159 igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~--~iGer 201 (515)
-.+|+=..+.|+.|+||||.++..+.|....+.+++++ +++.|
T Consensus 5 ~~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r 49 (191)
T 1xx6_A 5 KDHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNR 49 (191)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC----
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCcc
Confidence 35688889999999999999988888765444443333 34544
No 411
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=80.08 E-value=0.56 Score=51.88 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=23.6
Q ss_pred ccccc-ccccCCcceeeecCCCCCccHHH
Q psy2894 152 AIDSI-VPIGKGQRELIIGDRQTGKSSIA 179 (515)
Q Consensus 152 ~ID~l-~pigrGqr~~I~g~~g~GKt~l~ 179 (515)
+++.+ +.|.+|+.++|+|++|+|||||+
T Consensus 337 ~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl 365 (670)
T 3ux8_A 337 NLKNVSVKIPLGTFVAVTGVSGSGKSTLV 365 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred ccccceeEecCCCEEEEEeeCCCCHHHHH
Confidence 44433 58899999999999999999994
No 412
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=80.05 E-value=1 Score=41.74 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=18.8
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
++.|.|++|+||||++ ..++..-
T Consensus 2 ~I~l~G~~GsGKsT~a-~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA-QFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHh
Confidence 5889999999999995 6666543
No 413
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=80.03 E-value=0.93 Score=44.11 Aligned_cols=37 Identities=16% Similarity=0.296 Sum_probs=25.5
Q ss_pred cceeeecCCCCCccHHHHHHHHHhc-CCCeEEEEEEecC
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQK-NKNVTCIYVAIGQ 200 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~~-~~~~~~V~~~iGe 200 (515)
..++|.|++|||||++| ..+++.. ..+..++++-+..
T Consensus 48 ~~~ll~G~~GtGKt~la-~~la~~~~~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA-KTLAATLFDTEEAMIRIDMTE 85 (311)
T ss_dssp EEEEEESCSSSSHHHHH-HHHHHHHHSCGGGEEEEEGGG
T ss_pred eEEEEECCCCcCHHHHH-HHHHHHHcCCCcceEEeeccc
Confidence 46899999999999995 6676653 2232345566554
No 414
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=79.94 E-value=0.54 Score=51.99 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=21.5
Q ss_pred ccccCCcceeeecCCCCCccHHH
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIA 179 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~ 179 (515)
+.+-+|+.++|+|++|+|||||+
T Consensus 39 l~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 39 VEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEEETTSEEEEECSTTSSHHHHH
T ss_pred EEECCCCEEEEECCCCCCHHHHh
Confidence 58899999999999999999994
No 415
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=79.93 E-value=0.68 Score=42.48 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=19.9
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
|++|+|++|+|||+| +..+.+..
T Consensus 27 ki~vvG~~~~GKSsL-i~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTF-LYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHH-HHHHHCSC
T ss_pred EEEEECcCCCCHHHH-HHHHhcCC
Confidence 789999999999999 68877654
No 416
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=79.85 E-value=0.69 Score=41.78 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=18.9
Q ss_pred cceeeecCCCCCccHHHHHHHHHh
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
=+++++|++|+|||+| +..+.+.
T Consensus 21 ~ki~~~G~~~~GKssl-~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSL-VVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHH-HHHHHC-
T ss_pred eEEEEECCCCCCHHHH-HHHHHhC
Confidence 3789999999999999 5777654
No 417
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=79.74 E-value=1.1 Score=45.32 Aligned_cols=21 Identities=24% Similarity=0.252 Sum_probs=17.4
Q ss_pred ceeeecCCCCCccHHHHHHHHH
Q psy2894 164 RELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~ 185 (515)
-++|.|++|+||||++ ..|..
T Consensus 94 iigI~GpsGSGKSTl~-~~L~~ 114 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS-RVLKA 114 (321)
T ss_dssp EEEEECCTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 4899999999999995 55544
No 418
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=79.73 E-value=0.8 Score=46.55 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.1
Q ss_pred CcceeeecCCCCCccHHHHHHHHHh
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
|.+++|+|.+|+||||| ++.++..
T Consensus 74 ~~~v~lvG~pgaGKSTL-ln~L~~~ 97 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTF-IEYFGKM 97 (349)
T ss_dssp CEEEEEECCTTSSHHHH-HHHHHHH
T ss_pred ceEEEEEcCCCCCHHHH-HHHHHHH
Confidence 77899999999999999 6887763
No 419
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=79.70 E-value=1 Score=43.51 Aligned_cols=22 Identities=32% Similarity=0.444 Sum_probs=17.6
Q ss_pred eeeecCCCCCccHHHHHHHHHhc
Q psy2894 165 ELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 165 ~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.|.|++|+|||||+ ..++..-
T Consensus 4 i~I~G~~GSGKSTla-~~La~~~ 25 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMA-IQIAQET 25 (253)
T ss_dssp EEEECCTTSSHHHHH-HHHHHHH
T ss_pred EEEECCCCcCHHHHH-HHHHhcC
Confidence 689999999999996 5565543
No 420
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=79.63 E-value=0.7 Score=45.97 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=22.1
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
.-+++...+|.|++|+||||++ ..+++
T Consensus 32 ~~~~~~~~ll~Gp~G~GKTtl~-~~la~ 58 (354)
T 1sxj_E 32 QPRDLPHLLLYGPNGTGKKTRC-MALLE 58 (354)
T ss_dssp CTTCCCCEEEECSTTSSHHHHH-HTHHH
T ss_pred hCCCCCeEEEECCCCCCHHHHH-HHHHH
Confidence 4566667999999999999994 77766
No 421
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=79.59 E-value=0.79 Score=41.93 Aligned_cols=23 Identities=17% Similarity=0.521 Sum_probs=19.9
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
|++++|++|+|||+| +..+.+..
T Consensus 27 ki~vvG~~~~GKSsl-i~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCL-LIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHH-HHHHHHSS
T ss_pred EEEEECcCCCCHHHH-HHHHhcCC
Confidence 799999999999999 67777643
No 422
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=79.49 E-value=1 Score=41.24 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=18.7
Q ss_pred cceeeecCCCCCccHHHHHHHHHh
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
-.++|.|++|+||||++ ..+...
T Consensus 19 ~~I~l~G~~GsGKSTla-~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG-EAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHH-HHHHHH
T ss_pred eEEEEECCCCCCHHHHH-HHHHHH
Confidence 46899999999999995 666544
No 423
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=79.40 E-value=0.8 Score=41.08 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=19.9
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++++|++|+|||+| +..+.+..
T Consensus 20 ki~v~G~~~~GKssl-i~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCL-LMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHH-HHHHHHSS
T ss_pred EEEEECCCCCCHHHH-HHHHhcCC
Confidence 789999999999999 68877653
No 424
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=79.34 E-value=2.1 Score=46.91 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=35.2
Q ss_pred CcceeeecCCCCCccHHHHHHHHHhcC-CCeEEEEEEecCChHHHHHHHHHHhhcC
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQKN-KNVTCIYVAIGQKISSIKKTANLLEKYG 216 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~~~-~~~~~V~~~iGer~~ev~~~~~~l~~~~ 216 (515)
+.-.+|.||||||||+++...+..-.. .+-.+ +.+.-.+.-+.++.+.+.+.|
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~i--lv~a~tn~A~~~l~~~l~~~~ 248 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPV--LVCAPSNIAVDQLTEKIHQTG 248 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCE--EEEESSHHHHHHHHHHHHTTT
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeE--EEEeCcHHHHHHHHHHHHhcC
Confidence 456789999999999996444433211 22222 455567788888888887654
No 425
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=79.28 E-value=0.98 Score=41.84 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=22.1
Q ss_pred ccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 159 IGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 159 igrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+|..+.|.|.+|+||||++ ..+...
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~-~~l~~~ 48 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLA-VELEHQ 48 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHH-HHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHH-HHHHHH
Confidence 457889999999999999995 666543
No 426
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=79.24 E-value=0.73 Score=43.97 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=20.5
Q ss_pred cceeeecCCCCCccHHHHHHHHHhc
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
-+++|+|.+|+|||+| ++.++...
T Consensus 23 ~~I~lvG~~g~GKStl-~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAA-GNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHH-HHHHHTSC
T ss_pred eEEEEECCCCCCHHHH-HHHHhCCC
Confidence 4799999999999999 68887653
No 427
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=79.18 E-value=0.66 Score=44.99 Aligned_cols=24 Identities=21% Similarity=0.544 Sum_probs=21.0
Q ss_pred cceeeecCCCCCccHHHHHHHHHhc
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
-+++|+|++++|||+| ++.+....
T Consensus 27 ~~i~vvG~~~~GKSSL-ln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSV-LENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHH-HHHHHTSC
T ss_pred CeEEEEeCCCCCHHHH-HHHHHCCC
Confidence 4899999999999999 78888654
No 428
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=79.15 E-value=3.7 Score=40.88 Aligned_cols=25 Identities=16% Similarity=0.127 Sum_probs=19.5
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+..-.++.|++|+|||+++ ..+++.
T Consensus 17 ~~~~~Lf~Gp~G~GKtt~a-~~la~~ 41 (305)
T 2gno_A 17 EGISILINGEDLSYPREVS-LELPEY 41 (305)
T ss_dssp SSEEEEEECSSSSHHHHHH-HHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHh
Confidence 3446889999999999996 556654
No 429
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=79.11 E-value=1.2 Score=41.30 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=17.9
Q ss_pred eeeecCCCCCccHHHHHHHHHhc
Q psy2894 165 ELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 165 ~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.|.||+|+||||| +..+..+.
T Consensus 4 IVi~GPSG~GK~Tl-~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTL-LKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHH-HHHHHHHC
T ss_pred EEEECCCCCCHHHH-HHHHHHhC
Confidence 56899999999999 57776654
No 430
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=79.04 E-value=0.42 Score=55.43 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=26.2
Q ss_pred cccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 156 IVPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 156 l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
=+.+-+|++++|+|++|+||||| +.+|...
T Consensus 693 Sl~I~~GeivaIiGpNGSGKSTL-LklLaGl 722 (986)
T 2iw3_A 693 NFQCSLSSRIAVIGPNGAGKSTL-INVLTGE 722 (986)
T ss_dssp EEEEETTCEEEECSCCCHHHHHH-HHHHTTS
T ss_pred EEEEcCCCEEEEECCCCCCHHHH-HHHHhCC
Confidence 35789999999999999999999 6887754
No 431
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=78.98 E-value=0.85 Score=42.06 Aligned_cols=23 Identities=22% Similarity=0.608 Sum_probs=19.9
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
|++++|++|+|||+| +..+.+..
T Consensus 30 ki~vvG~~~vGKSsL-i~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTAL-LHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHSC
T ss_pred EEEEECCCCCCHHHH-HHHHhcCC
Confidence 799999999999999 67777653
No 432
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=78.97 E-value=0.52 Score=51.27 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=23.8
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.+-+|+.+.|+|.+|+|||||+ ..++..
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLa-r~La~~ 392 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLA-RALAAR 392 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHH-HHHHHH
T ss_pred ccccceEEEEECCCCChHHHHH-HHHHHh
Confidence 4678999999999999999994 666654
No 433
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=78.94 E-value=0.86 Score=41.46 Aligned_cols=23 Identities=22% Similarity=0.538 Sum_probs=19.7
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
|++++|++|+|||+| +..+.+..
T Consensus 27 ki~vvG~~~~GKSsl-i~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCL-LIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHSS
T ss_pred EEEEECCCCCCHHHH-HHHHHhCc
Confidence 789999999999999 67777643
No 434
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=78.93 E-value=0.85 Score=41.63 Aligned_cols=23 Identities=17% Similarity=0.473 Sum_probs=19.6
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++|+|++|+|||+| +..+.+..
T Consensus 31 ki~vvG~~~vGKSsl-i~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCV-VQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHH-HHHHHHSC
T ss_pred EEEEECcCCCCHHHH-HHHHhhCC
Confidence 789999999999999 67777643
No 435
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=78.90 E-value=0.45 Score=43.58 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=19.4
Q ss_pred cceeeecCCCCCccHHHHHHHHHh
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.++|+|++|+||||| +..|+..
T Consensus 3 ~~v~IvG~SGsGKSTL-~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTL-ITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHH-HHHHHHH
T ss_pred eEEEEECCCCCCHHHH-HHHHHHH
Confidence 5789999999999999 5777664
No 436
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=78.69 E-value=0.53 Score=42.23 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=19.6
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
|++++|++|+|||+| +..+.+..
T Consensus 23 ki~v~G~~~~GKSsl-i~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTI-INKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHH-HHHTSCGG
T ss_pred EEEEECCCCCCHHHH-HHHHhcCC
Confidence 799999999999999 67776554
No 437
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=78.63 E-value=0.94 Score=41.94 Aligned_cols=23 Identities=22% Similarity=0.605 Sum_probs=19.8
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
|+.|+|++++|||+| +..+.+..
T Consensus 29 ki~vvG~~~vGKSsL-~~~l~~~~ 51 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAM-LQVLAKDC 51 (214)
T ss_dssp EEEEECSTTSSHHHH-HHHHHHSC
T ss_pred EEEEECcCCCCHHHH-HHHHhcCC
Confidence 789999999999999 67777653
No 438
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=78.59 E-value=0.88 Score=50.03 Aligned_cols=25 Identities=20% Similarity=0.539 Sum_probs=21.3
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+|+.++|+|++|+||||| +.+|...
T Consensus 377 ~GEiv~iiG~NGsGKSTL-lk~l~Gl 401 (608)
T 3j16_B 377 DSEILVMMGENGTGKTTL-IKLLAGA 401 (608)
T ss_dssp TTCEEEEESCTTSSHHHH-HHHHHTS
T ss_pred cceEEEEECCCCCcHHHH-HHHHhcC
Confidence 348899999999999999 6888764
No 439
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=78.52 E-value=0.62 Score=42.09 Aligned_cols=22 Identities=32% Similarity=0.664 Sum_probs=18.3
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+++|+|++|+|||+| +..+.+.
T Consensus 28 ki~vvG~~~~GKSsL-i~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSL-MERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHH-HHHHCC-
T ss_pred EEEEECCCCCCHHHH-HHHHhcC
Confidence 789999999999999 5776643
No 440
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=78.47 E-value=1.5 Score=42.36 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=20.0
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.++..+.|.|.+|+||||++ ..+...
T Consensus 2 ~~~~lIvl~G~pGSGKSTla-~~La~~ 27 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFS-KNLAKI 27 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHH-HHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHH-HHHHHH
Confidence 34567899999999999996 555543
No 441
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=78.45 E-value=9.1 Score=35.92 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=21.9
Q ss_pred ccccccccccCCcceeeecCCCCCccHHHHHHHH
Q psy2894 151 KAIDSIVPIGKGQRELIIGDRQTGKSSIAIDIII 184 (515)
Q Consensus 151 k~ID~l~pigrGqr~~I~g~~g~GKt~l~~~~i~ 184 (515)
.+|+.+ -.|..+.+.++.|+|||...+-.++
T Consensus 52 ~~i~~i---~~~~~~l~~a~TGsGKT~~~~~~~l 82 (253)
T 1wrb_A 52 NAIPAI---LEHRDIMACAQTGSGKTAAFLIPII 82 (253)
T ss_dssp HHHHHH---HTTCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHH---hCCCCEEEECCCCChHHHHHHHHHH
Confidence 455543 3578899999999999986533333
No 442
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=78.40 E-value=0.83 Score=40.91 Aligned_cols=23 Identities=22% Similarity=0.512 Sum_probs=19.2
Q ss_pred cceeeecCCCCCccHHHHHHHHHh
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
=+++++|++|+|||+| +..+.+.
T Consensus 17 ~ki~ivG~~~vGKSsL-~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTL-LKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHH-HHHHCCS
T ss_pred eEEEEECCCCCCHHHH-HHHHhcC
Confidence 4799999999999999 5776654
No 443
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=78.37 E-value=0.91 Score=41.41 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=19.6
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++|+|++|+|||+| +..+.+..
T Consensus 11 ki~i~G~~~~GKTsl-i~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCM-LICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHSC
T ss_pred EEEEECCCCCCHHHH-HHHHhcCC
Confidence 789999999999999 67777643
No 444
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=78.35 E-value=0.92 Score=41.53 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=20.0
Q ss_pred CcceeeecCCCCCccHHHHHHHHHh
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.=|++++|++|+|||+| +..+.++
T Consensus 30 ~~ki~vvG~~~~GKSsL-i~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCL-LISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHH-HHHHHHS
T ss_pred eEEEEEECcCCCCHHHH-HHHHHhC
Confidence 34899999999999999 5777754
No 445
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=78.21 E-value=0.62 Score=41.16 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=19.7
Q ss_pred CCcceeeecCCCCCccHHHHHHHHH
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
+.=+++++|++|+|||+| +..+.+
T Consensus 17 ~~~~i~v~G~~~~GKssl-i~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTI-LYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHH-HHHTCC
T ss_pred CccEEEEECCCCCCHHHH-HHHHhc
Confidence 455899999999999999 566653
No 446
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=78.20 E-value=1 Score=41.94 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=18.3
Q ss_pred cceeeecCCCCCccHHHHHHHHHh
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
-.++|.|++|+||||++ ..+...
T Consensus 13 ~iIgltG~~GSGKSTva-~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVC-EILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHH-HHHHHH
T ss_pred eEEEEECCCCCCHHHHH-HHHHHh
Confidence 35899999999999995 555543
No 447
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=78.11 E-value=0.96 Score=40.37 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=18.6
Q ss_pred cceeeecCCCCCccHHHHHHHHHh
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
..++|.|++|+||||++ ..+...
T Consensus 7 ~~I~l~G~~GsGKsT~~-~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQC-ANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHH-HHHHHH
T ss_pred cEEEEECCCCCCHHHHH-HHHHHH
Confidence 46899999999999995 666543
No 448
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=78.10 E-value=0.77 Score=42.83 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=19.4
Q ss_pred cceeeecCCCCCccHHHHHHHHHh
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
=+++++|++|+|||+| +..+.++
T Consensus 30 ~kI~vvG~~~vGKSsL-in~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSF-MNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHH-HHHHTTT
T ss_pred CEEEEECCCCCCHHHH-HHHHhCC
Confidence 3789999999999999 6777654
No 449
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=78.08 E-value=1.5 Score=46.39 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=22.9
Q ss_pred cceeeecCCCCCccHHHHHHHHHhcCCCe
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQKNKNV 191 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~~~~~~ 191 (515)
..++++|++|||||+++ ..+++..+..+
T Consensus 51 ~~iLl~GppGtGKT~la-r~lA~~l~~~~ 78 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIA-RRLAKLANAPF 78 (444)
T ss_dssp CCEEEECCTTSSHHHHH-HHHHHHTTCCE
T ss_pred ceEEEEcCCCCCHHHHH-HHHHHHcCCCc
Confidence 46999999999999995 77887665554
No 450
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=77.87 E-value=0.84 Score=44.16 Aligned_cols=22 Identities=18% Similarity=0.477 Sum_probs=19.1
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+++++|++|+||||| +..+...
T Consensus 5 ~i~lvG~~g~GKTTL-~n~l~g~ 26 (271)
T 3k53_A 5 TVALVGNPNVGKTTI-FNALTGL 26 (271)
T ss_dssp EEEEEECSSSSHHHH-HHHHHTT
T ss_pred EEEEECCCCCCHHHH-HHHHhCC
Confidence 689999999999999 6877754
No 451
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=77.70 E-value=1 Score=43.09 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=17.6
Q ss_pred ceeeecCCCCCccHHHHHHHHH
Q psy2894 164 RELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~ 185 (515)
.++|.|++|+||||++ ..+..
T Consensus 24 iI~I~G~~GSGKST~a-~~L~~ 44 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVC-AKIVQ 44 (252)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 5899999999999996 55554
No 452
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=77.61 E-value=0.82 Score=42.19 Aligned_cols=22 Identities=23% Similarity=0.575 Sum_probs=18.5
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+++++|++|+|||+| +..+.+.
T Consensus 36 ki~vvG~~~vGKSsl-i~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSL-LMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHH-HHHHHC-
T ss_pred EEEEECcCCCCHHHH-HHHHHcC
Confidence 799999999999999 5777653
No 453
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=77.54 E-value=0.66 Score=42.06 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=19.6
Q ss_pred CcceeeecCCCCCccHHHHHHHHHh
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.=+++++|++|+|||+| +..+.+.
T Consensus 29 ~~ki~v~G~~~vGKSsL-i~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTI-LYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHH-HHHHCSS
T ss_pred ccEEEEECCCCCCHHHH-HHHHHhC
Confidence 44799999999999999 5776543
No 454
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=77.53 E-value=0.97 Score=48.37 Aligned_cols=28 Identities=14% Similarity=0.232 Sum_probs=23.8
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+.+.+ +.++|+|++|+||||| +.+|...
T Consensus 25 l~i~~-e~~~liG~nGsGKSTL-l~~l~Gl 52 (483)
T 3euj_A 25 FDFDE-LVTTLSGGNGAGKSTT-MAGFVTA 52 (483)
T ss_dssp EECCS-SEEEEECCTTSSHHHH-HHHHHHH
T ss_pred EEEcc-ceEEEECCCCCcHHHH-HHHHhcC
Confidence 46778 9999999999999999 6777653
No 455
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=77.49 E-value=0.84 Score=41.34 Aligned_cols=22 Identities=41% Similarity=0.732 Sum_probs=18.7
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
|+.++|++|+|||+| +..+.++
T Consensus 22 ki~~vG~~~vGKTsL-i~~l~~~ 43 (196)
T 3llu_A 22 RILLMGLRRSGKSSI-QKVVFHK 43 (196)
T ss_dssp EEEEEESTTSSHHHH-HHHHHSC
T ss_pred EEEEECCCCCCHHHH-HHHHHhc
Confidence 789999999999999 5766653
No 456
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=77.43 E-value=1.1 Score=43.34 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=18.9
Q ss_pred cceeeecCCCCCccHHHHHHHHHh
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
-|.||+|++|+||||++ ..++..
T Consensus 9 ~~~~~~G~pGsGKsT~a-~~L~~~ 31 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQA-NFIKEK 31 (230)
T ss_dssp CEEEEECCTTSCHHHHH-HHHHHH
T ss_pred cceeeECCCCCCHHHHH-HHHHHH
Confidence 48899999999999996 556553
No 457
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=77.15 E-value=1.1 Score=41.59 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=19.9
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++|+|++++|||+| +..+.+..
T Consensus 15 ki~v~G~~~vGKSsl-i~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNL-LSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHH-HHHHHHCC
T ss_pred EEEEECcCCCCHHHH-HHHHhcCC
Confidence 789999999999999 67777654
No 458
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=76.82 E-value=0.86 Score=41.53 Aligned_cols=20 Identities=20% Similarity=0.486 Sum_probs=17.5
Q ss_pred ceeeecCCCCCccHHHHHHHH
Q psy2894 164 RELIIGDRQTGKSSIAIDIII 184 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~ 184 (515)
+++++|++|+|||+| +..+.
T Consensus 25 ki~vvG~~~vGKSsL-i~~l~ 44 (195)
T 3cbq_A 25 KVMLVGESGVGKSTL-AGTFG 44 (195)
T ss_dssp EEEEECSTTSSHHHH-HHHTC
T ss_pred EEEEECCCCCCHHHH-HHHHH
Confidence 789999999999999 56664
No 459
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=76.81 E-value=0.98 Score=53.88 Aligned_cols=35 Identities=20% Similarity=0.424 Sum_probs=28.6
Q ss_pred cccc-cccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 152 AIDS-IVPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 152 ~ID~-l~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++. =+.|-+|++++|+|++|+||||| +..|...-
T Consensus 1048 ~l~~vsl~i~~Ge~v~ivG~sGsGKSTl-~~~l~g~~ 1083 (1284)
T 3g5u_A 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTV-VQLLERFY 1083 (1284)
T ss_dssp SBSSCCEEECSSSEEEEECSSSTTHHHH-HHHHTTSS
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHH-HHHHhcCc
Confidence 4433 35889999999999999999999 68888754
No 460
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=76.72 E-value=1.1 Score=43.15 Aligned_cols=38 Identities=21% Similarity=0.192 Sum_probs=25.4
Q ss_pred cceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHH
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSI 205 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev 205 (515)
-.+.|.|++|+||||++ ..++..-+ +.|+-.|.-.+.+
T Consensus 10 ~~i~i~G~~GsGKsTla-~~la~~lg----~~~~d~g~~~r~~ 47 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVS-RGLARALG----ARYLDTGAMYRIA 47 (233)
T ss_dssp CEEEEECCTTSSHHHHH-HHHHHHHT----CEEEEHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHH-HHHHHHhC----CCcccCCcHHHHH
Confidence 37999999999999995 66665432 2345555444443
No 461
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=76.71 E-value=1.8 Score=39.97 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=18.7
Q ss_pred cceeeecCCCCCccHHHHHHHHHh
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
-++.|+|++|+|||+|+ ..++..
T Consensus 39 ~~i~ivG~~gvGKTtl~-~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLI-EKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHH-HHHHHH
T ss_pred eEEEEEcCCCCCHHHHH-HHHHHH
Confidence 47899999999999994 555554
No 462
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=76.67 E-value=0.87 Score=45.24 Aligned_cols=22 Identities=23% Similarity=0.520 Sum_probs=17.7
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+++|+|++|+||||| +.+|...
T Consensus 20 ~I~lvG~nG~GKSTL-l~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTL-INSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHH-HHHHHC-
T ss_pred EEEEECCCCCCHHHH-HHHHhCC
Confidence 349999999999999 6877643
No 463
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=76.50 E-value=0.87 Score=41.53 Aligned_cols=22 Identities=14% Similarity=0.490 Sum_probs=18.7
Q ss_pred cceeeecCCCCCccHHHHHHHHH
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
-+++++|++|+|||+| +..+.+
T Consensus 26 ~ki~lvG~~~vGKSsL-i~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTL-LHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHH-HHHHSC
T ss_pred cEEEEECCCCCCHHHH-HHHHhc
Confidence 3799999999999999 576654
No 464
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=76.41 E-value=1.3 Score=43.71 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=18.8
Q ss_pred cceeeecCCCCCccHHHHHHHHHh
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
..++|.|++|+|||+++ ..+++.
T Consensus 59 ~~~ll~G~~G~GKT~la-~~la~~ 81 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI-LALTKE 81 (353)
T ss_dssp CCEEEECSTTSSHHHHH-HHHHHH
T ss_pred CEEEEECCCCCCHHHHH-HHHHHH
Confidence 45999999999999995 666654
No 465
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=76.36 E-value=0.64 Score=41.92 Aligned_cols=22 Identities=23% Similarity=0.610 Sum_probs=4.7
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+++++|++|+|||+| +..+.+.
T Consensus 22 ~i~v~G~~~~GKssl-i~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSAL-ISMFTSK 43 (208)
T ss_dssp EEEEC------------------
T ss_pred EEEEECCCCCCHHHH-HHHHHhC
Confidence 899999999999999 5666654
No 466
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=76.35 E-value=1.2 Score=42.39 Aligned_cols=31 Identities=13% Similarity=0.306 Sum_probs=21.8
Q ss_pred ceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEec
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIG 199 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iG 199 (515)
-+.|+|+||+||+|.| ..|+..- + +.++.+|
T Consensus 31 iI~llGpPGsGKgTqa-~~L~~~~--g--~~hIstG 61 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQC-EKLVQKF--H--FNHLSSG 61 (217)
T ss_dssp EEEEECCTTCCHHHHH-HHHHHHH--C--CEEECHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHH--C--CceEcHH
Confidence 4678999999999996 6666432 2 3456666
No 467
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=76.30 E-value=8.1 Score=37.06 Aligned_cols=52 Identities=13% Similarity=0.166 Sum_probs=31.0
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHh-cCCCeEEEEEEecCChHHHHHHHHHHh
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQ-KNKNVTCIYVAIGQKISSIKKTANLLE 213 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~-~~~~~~~V~~~iGer~~ev~~~~~~l~ 213 (515)
+|.-+.|.|++|+||||++ ..+... ...+..++...--..+.++.+.++.+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~-~~l~~~l~~~~~~~~~~~rep~~t~~g~~ir~~l 78 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAI-QVVVETLQQNGIDHITRTREPGGTLLAEKLRALV 78 (236)
T ss_dssp CCCEEEEEESTTSCHHHHH-HHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHHHhcCCCeeeeecCCCCCHHHHHHHHHH
Confidence 5788999999999999995 555543 222222122222223456666666543
No 468
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=75.94 E-value=1.3 Score=40.31 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=19.2
Q ss_pred ceeeecCCCCCccHHHHHHHHHhcC
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQKN 188 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~~ 188 (515)
.++|.|++|+||||++ ..++..-+
T Consensus 4 ~i~i~G~~GsGKst~~-~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVA-RRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHHHT
T ss_pred EEEEECCCCCCHHHHH-HHHHHhcC
Confidence 6899999999999995 66665433
No 469
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=75.81 E-value=23 Score=39.10 Aligned_cols=27 Identities=11% Similarity=0.256 Sum_probs=22.8
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHH
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
++-+|.+++|+|+.|+||||| ++.++.
T Consensus 5 ~~~~~~~i~IiG~~gaGKTTL-l~~L~~ 31 (665)
T 2dy1_A 5 GGAMIRTVALVGHAGSGKTTL-TEALLY 31 (665)
T ss_dssp -CCCEEEEEEEESTTSSHHHH-HHHHHH
T ss_pred ccCCCcEEEEECCCCChHHHH-HHHHHH
Confidence 466899999999999999999 577773
No 470
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=75.73 E-value=1.1 Score=44.38 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=20.3
Q ss_pred CcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+..++|.|++|||||++| ..+++..
T Consensus 45 ~~~vLl~G~~GtGKT~la-~~la~~~ 69 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV-RALAALL 69 (350)
T ss_dssp GCCEEEECCGGGCTTHHH-HHHHHHS
T ss_pred CceEEEECCCCccHHHHH-HHHHHhC
Confidence 345999999999999995 7777654
No 471
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=75.68 E-value=1.3 Score=41.57 Aligned_cols=22 Identities=23% Similarity=0.505 Sum_probs=18.0
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
++.|.|++|+||||++ ..++..
T Consensus 2 ~I~l~G~~GsGKsT~a-~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG-NLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHH
Confidence 5789999999999995 666654
No 472
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=75.54 E-value=2.5 Score=47.27 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=21.1
Q ss_pred cCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 160 GKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 160 grGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.+...+++.|+||||||+++ ..+++.
T Consensus 199 ~~~~~vLL~G~pGtGKT~la-~~la~~ 224 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIA-EGLAQQ 224 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHH-HHHHHH
T ss_pred CCCCCeEEECCCCCCHHHHH-HHHHHH
Confidence 45667999999999999996 666654
No 473
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=75.37 E-value=0.41 Score=49.09 Aligned_cols=35 Identities=26% Similarity=0.454 Sum_probs=27.9
Q ss_pred ccccccccc-ccccCCcceeeecCCCCCccHHHHHHHH
Q psy2894 148 TGIKAIDSI-VPIGKGQRELIIGDRQTGKSSIAIDIII 184 (515)
Q Consensus 148 TGik~ID~l-~pigrGqr~~I~g~~g~GKt~l~~~~i~ 184 (515)
.++++++.+ +.+.+| ..+|+|+.|+||||| ++.|.
T Consensus 46 ~nf~~l~~v~l~~~~G-~~~lvG~NGaGKStL-l~aI~ 81 (415)
T 4aby_A 46 RNLATITQLELELGGG-FCAFTGETGAGKSII-VDALG 81 (415)
T ss_dssp EEETTEEEEEEECCSS-EEEEEESHHHHHHHH-THHHH
T ss_pred ccccceeeEEEecCCC-cEEEECCCCCCHHHH-HHHHH
Confidence 355666543 588999 999999999999999 67763
No 474
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=75.19 E-value=1.1 Score=45.19 Aligned_cols=25 Identities=40% Similarity=0.554 Sum_probs=21.4
Q ss_pred CCcceeeecCCCCCccHHHHHHHHH
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
.|.-++|.|++|+|||++++..+-+
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 5788999999999999998666654
No 475
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=75.14 E-value=0.72 Score=50.58 Aligned_cols=35 Identities=34% Similarity=0.571 Sum_probs=25.5
Q ss_pred ccccccccccCCc-----ceeeecCCCCCccHHHHHHHHHh
Q psy2894 151 KAIDSIVPIGKGQ-----RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 151 k~ID~l~pigrGq-----r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
..||.+-.+|-+. .++|+|++|+||||| +.+|...
T Consensus 29 ~~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTL-L~~I~Gl 68 (608)
T 3szr_A 29 DLIDSLRALGVEQDLALPAIAVIGDQSSGKSSV-LEALSGV 68 (608)
T ss_dssp HHHHHHHHHSCCSSCCCCCEECCCCTTSCHHHH-HHHHHSC
T ss_pred HHHHHHHhCCCCCcccCCeEEEECCCCChHHHH-HHHHhCC
Confidence 3456555555442 489999999999999 6888754
No 476
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=75.06 E-value=1.2 Score=39.41 Aligned_cols=20 Identities=50% Similarity=0.821 Sum_probs=17.4
Q ss_pred ceeeecCCCCCccHHHHHHHH
Q psy2894 164 RELIIGDRQTGKSSIAIDIII 184 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~ 184 (515)
--+|+|+.|+|||+| ++.|.
T Consensus 25 ~~~I~G~NGsGKSti-l~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL-LDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHH-HHHHH
T ss_pred eEEEECCCCCCHHHH-HHHHH
Confidence 578999999999999 67765
No 477
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=74.38 E-value=1.5 Score=43.70 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=17.9
Q ss_pred eeeecCCCCCccHHHHHHHHHh
Q psy2894 165 ELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 165 ~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
.++.|++|+|||+++ ..+++.
T Consensus 49 ~ll~Gp~G~GKTtla-~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTI-VALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHH-HHHHHH
T ss_pred EEEECCCCCCHHHHH-HHHHHH
Confidence 899999999999995 666654
No 478
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=74.38 E-value=1.3 Score=41.41 Aligned_cols=21 Identities=33% Similarity=0.691 Sum_probs=18.1
Q ss_pred ceeeecCCCCCccHHHHHHHHH
Q psy2894 164 RELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~ 185 (515)
|+.|+|++|+|||+| +..+..
T Consensus 39 kVvlvG~~~vGKSSL-l~r~~~ 59 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTL-ANIFAG 59 (211)
T ss_dssp EEEEECCTTSSHHHH-HHHHHC
T ss_pred EEEEECCCCCCHHHH-HHHHHh
Confidence 799999999999999 566663
No 479
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=74.37 E-value=2 Score=41.09 Aligned_cols=125 Identities=18% Similarity=0.136 Sum_probs=61.6
Q ss_pred ccCCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEE--EecCChHHHHHHHHHHhhcCCCCcEEEEEeCCCCCHHhhH
Q psy2894 159 IGKGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYV--AIGQKISSIKKTANLLEKYGAMPYTIIVAATASDSASMQF 236 (515)
Q Consensus 159 igrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~--~iGer~~ev~~~~~~l~~~~~~~~t~vv~~t~~~~~~~r~ 236 (515)
-.+|+-..+.|+.|+||||.++..+.|....+-+++++ +++.|..+- .+...+ |.--.++.+ ++. .
T Consensus 25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~-~i~s~~---g~~~~a~~~----~~~--~-- 92 (214)
T 2j9r_A 25 NQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEE-DVVSHN---GLKVKAVPV----SAS--K-- 92 (214)
T ss_dssp CCSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC---------------------CCEEEC----SSG--G--
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHH-HHHhhc---CCeeEEeec----CCH--H--
Confidence 34577788999999999999999988876555443333 456554332 233332 111112221 111 0
Q ss_pred HHHhhhhhhHHHHHHcCCcEEEEEechhHH----HHHHHHHHHhcCCC---CCC-CCCCCchhhhhhHHHHHhhccc
Q psy2894 237 ISAYSGCTIGEYFRDHGKDALVVYDDLSKQ----AVAYRQISLLLKRP---PGR-EAYPGDIFYLHSRLLERSARVN 305 (515)
Q Consensus 237 ~a~~~a~~iAE~frd~G~~Vlli~Dsltr~----a~A~reisl~l~~p---p~~-~gypg~vf~~~~rl~ERag~~~ 305 (515)
.+-+++ .+.--+|++|..--+ .+..+++.-. |-+ .|+ --|-+..|.-.++|++.|-.+.
T Consensus 93 -------~~~~~~--~~~~dvViIDEaQF~~~~~V~~l~~l~~~-~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vt 159 (214)
T 2j9r_A 93 -------DIFKHI--TEEMDVIAIDEVQFFDGDIVEVVQVLANR-GYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVT 159 (214)
T ss_dssp -------GGGGGC--CSSCCEEEECCGGGSCTTHHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEE
T ss_pred -------HHHHHH--hcCCCEEEEECcccCCHHHHHHHHHHhhC-CCEEEEEecccccccCccccHHHHHHhcccEE
Confidence 011111 122236777875443 3334443321 221 122 2478888999999999988764
No 480
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=74.14 E-value=1.4 Score=47.94 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=23.4
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
-+-.|+.++|+|++|||||+|+ ..|++.
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtla-r~ia~~ 83 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLG-QAMAEL 83 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHH-HHHHHT
T ss_pred cccCCCEEEEEeCCCCCHHHHH-HHHhcc
Confidence 3456789999999999999995 777764
No 481
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=73.61 E-value=1.2 Score=44.24 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=21.1
Q ss_pred CcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
-.+++|+|.+|+||||| ++.+..++
T Consensus 7 ~g~V~ivG~~nvGKSTL-ln~l~g~~ 31 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTL-LNNLLGVK 31 (301)
T ss_dssp EEEEEEECSTTSSHHHH-HHHHHTSC
T ss_pred CCEEEEECCCCCCHHHH-HHHHhCCc
Confidence 34799999999999999 68888754
No 482
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=73.50 E-value=12 Score=38.14 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=19.3
Q ss_pred Ccc-eeeecCCCCCccHHHHHHHHHh
Q psy2894 162 GQR-ELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 162 Gqr-~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
|-+ ++|+|++|+||||| +..+.+.
T Consensus 178 ~~~~V~lvG~~naGKSTL-ln~L~~~ 202 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSL-FNSLTGL 202 (364)
T ss_dssp -CCEEEEECBTTSSHHHH-HHHHHCC
T ss_pred CCcEEEEECCCCCCHHHH-HHHHHCC
Confidence 444 88999999999999 6877754
No 483
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=73.49 E-value=1.4 Score=42.65 Aligned_cols=22 Identities=18% Similarity=0.397 Sum_probs=19.0
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+++++|++|+|||+| +..+...
T Consensus 7 kI~lvG~~nvGKTsL-~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSL-FNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHH-HHHHHTT
T ss_pred EEEEECCCCCCHHHH-HHHHHCC
Confidence 689999999999999 6777753
No 484
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=75.67 E-value=0.69 Score=42.04 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=19.3
Q ss_pred CCcceeeecCCCCCccHHHHHHHHH
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
+.=|++++|++|+|||+| +..+.+
T Consensus 29 ~~~ki~v~G~~~~GKSsl-i~~l~~ 52 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCL-LISYTT 52 (204)
Confidence 344899999999999999 566654
No 485
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=73.35 E-value=1.6 Score=39.94 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=17.8
Q ss_pred cceeeecCCCCCccHHHHHHHHH
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
..++|.|++|+||||| +..++.
T Consensus 7 ~~i~i~G~sGsGKTTl-~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTL-LKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHH-HHHHHH
T ss_pred eEEEEEeCCCCCHHHH-HHHHHH
Confidence 3678999999999999 466554
No 486
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=73.35 E-value=19 Score=36.27 Aligned_cols=52 Identities=17% Similarity=0.241 Sum_probs=32.8
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhh
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQKNKNVTCIYVAIGQKISSIKKTANLLEK 214 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~~~V~~~iGer~~ev~~~~~~l~~ 214 (515)
.|+.+.+.++.|+|||...+-.+......+..++|++- ...=+.+..+.+.+
T Consensus 35 ~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~P--t~~L~~q~~~~~~~ 86 (414)
T 3oiy_A 35 QGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFP--TVTLVKQTLERLQK 86 (414)
T ss_dssp TTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEES--SHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEEC--CHHHHHHHHHHHHH
Confidence 68899999999999999655444444344445555552 22334455555555
No 487
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=72.97 E-value=1.7 Score=44.81 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.0
Q ss_pred CcceeeecCCCCCccHHHHHHHHHh
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
|-+++|+|.+++||||| +..+.+.
T Consensus 2 ~~kI~IVG~pnvGKSTL-~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTL-FNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHH-HHHHHHT
T ss_pred CCEEEEECCCCCCHHHH-HHHHHCC
Confidence 56899999999999999 6888774
No 488
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=72.95 E-value=1.4 Score=42.99 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=19.3
Q ss_pred ceeeecCCCCCccHHHHHHHHHh
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+++++|.+|+|||+| ++.+..+
T Consensus 5 ~I~lvG~~n~GKSTL-in~l~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTL-FNQLTGS 26 (274)
T ss_dssp EEEEEECTTSSHHHH-HHHHHTT
T ss_pred EEEEECCCCCCHHHH-HHHHhCC
Confidence 689999999999999 6888765
No 489
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=72.91 E-value=1.2 Score=50.37 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=26.1
Q ss_pred cccCCcceeeecCCCCCccHHHHHHHHHhcCCCe
Q psy2894 158 PIGKGQRELIIGDRQTGKSSIAIDIIINQKNKNV 191 (515)
Q Consensus 158 pigrGqr~~I~g~~g~GKt~l~~~~i~~~~~~~~ 191 (515)
.+-+|..+++.|++|||||+|+ ..+++..+.++
T Consensus 507 ~~~~~~~vLL~GppGtGKT~La-kala~~~~~~~ 539 (806)
T 1ypw_A 507 GMTPSKGVLFYGPPGCGKTLLA-KAIANECQANF 539 (806)
T ss_dssp CCCCCCCCCCBCCTTSSHHHHH-HHHHHHHTCCC
T ss_pred CCCCCceeEEECCCCCCHHHHH-HHHHHHhCCCE
Confidence 3457888999999999999995 88887665543
No 490
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=72.82 E-value=1.4 Score=44.52 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=20.5
Q ss_pred CcceeeecCCCCCccHHHHHHHHH
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
|.-++|.|++|+|||++|++.+.+
T Consensus 147 g~gvli~G~sG~GKStlal~l~~~ 170 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLINK 170 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 666999999999999999776553
No 491
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=72.82 E-value=1.8 Score=40.06 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=18.6
Q ss_pred CcceeeecCCCCCccHHHHHHHHH
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
+-.++|.|++|+||||++ ..+..
T Consensus 4 ~~~I~i~G~~GSGKST~~-~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVA-NAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHH-HHHHH
T ss_pred ceEEEEECCCCCCHHHHH-HHHHH
Confidence 446899999999999995 66654
No 492
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=72.81 E-value=1 Score=40.14 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=18.8
Q ss_pred CcceeeecCCCCCccHHHHHHHHH
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
-=+++++|++|+|||+| +..+.+
T Consensus 22 ~~~i~v~G~~~~GKssl-i~~l~~ 44 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSI-LYRLHL 44 (189)
T ss_dssp CEEEEEEEETTSSHHHH-HHHTCC
T ss_pred ceEEEEECCCCCCHHHH-HHHHHc
Confidence 44899999999999999 566643
No 493
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=72.76 E-value=4.5 Score=45.87 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=34.6
Q ss_pred CcceeeecCCCCCccHHHHHHHHHhcC-CCeEEEEEEecCChHHHHHHHHHHhhcC
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIINQKN-KNVTCIYVAIGQKISSIKKTANLLEKYG 216 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~~~~-~~~~~V~~~iGer~~ev~~~~~~l~~~~ 216 (515)
+.-.+|.||||||||+++...+..-.. .+-.+ +.+.-.+.-+.++.+.+.+.|
T Consensus 371 ~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~i--lv~a~tn~A~~~l~~~l~~~g 424 (800)
T 2wjy_A 371 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPV--LVCAPSNIAVDQLTEKIHQTG 424 (800)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCE--EEEESSHHHHHHHHHHHHTTT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcE--EEEcCcHHHHHHHHHHHHHhC
Confidence 456799999999999996444333221 22222 345566777888888887655
No 494
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=72.63 E-value=1.6 Score=52.13 Aligned_cols=30 Identities=20% Similarity=0.437 Sum_probs=26.3
Q ss_pred ccccCCcceeeecCCCCCccHHHHHHHHHhc
Q psy2894 157 VPIGKGQRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 157 ~pigrGqr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.+-+|++++|+|++|+||||| +..|...-
T Consensus 411 l~i~~G~~~~ivG~sGsGKSTl-~~ll~g~~ 440 (1284)
T 3g5u_A 411 LKVKSGQTVALVGNSGCGKSTT-VQLMQRLY 440 (1284)
T ss_dssp EEECTTCEEEEECCSSSSHHHH-HHHTTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHH-HHHHhCCC
Confidence 5889999999999999999999 57777643
No 495
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=72.58 E-value=1.4 Score=43.75 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=20.6
Q ss_pred cceeeecCCCCCccHHHHHHHHHhc
Q psy2894 163 QRELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 163 qr~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+.++|+|.+++||||| ++.+..++
T Consensus 11 g~v~ivG~~nvGKSTL-in~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTL-LNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHH-HHHHHTSC
T ss_pred CEEEEECCCCCcHHHH-HHHHhCCC
Confidence 4789999999999999 68888754
No 496
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=72.48 E-value=0.68 Score=46.86 Aligned_cols=23 Identities=22% Similarity=0.570 Sum_probs=20.2
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++|+|++++|||+| ++.+...+
T Consensus 33 ~I~vvG~~~~GKSSL-ln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSV-LENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHH-HHTTTTSC
T ss_pred eEEEECCCCCCHHHH-HHHHhCCC
Confidence 899999999999999 68887653
No 497
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=72.00 E-value=1.7 Score=42.89 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=15.3
Q ss_pred CcceeeecCCCCCccHHHHHHHHH
Q psy2894 162 GQRELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 162 Gqr~~I~g~~g~GKt~l~~~~i~~ 185 (515)
+-.++|.|++|+||||++ ..+..
T Consensus 5 ~~iIgItG~sGSGKSTva-~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVK-HTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHH-HHHHH
T ss_pred ceEEEEECCCCCCHHHHH-HHHHH
Confidence 446899999999999996 55544
No 498
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=71.99 E-value=2.5 Score=38.69 Aligned_cols=21 Identities=14% Similarity=0.382 Sum_probs=16.9
Q ss_pred ceeeecCCCCCccHHHHHHHHH
Q psy2894 164 RELIIGDRQTGKSSIAIDIIIN 185 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~ 185 (515)
.++|.|++|+|||||+ ..++.
T Consensus 6 ~i~i~G~sGsGKTTl~-~~L~~ 26 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM-EKWVA 26 (169)
T ss_dssp EEEEECCTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 5789999999999995 55554
No 499
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=71.87 E-value=1.4 Score=43.04 Aligned_cols=23 Identities=26% Similarity=0.676 Sum_probs=20.5
Q ss_pred ceeeecCCCCCccHHHHHHHHHhc
Q psy2894 164 RELIIGDRQTGKSSIAIDIIINQK 187 (515)
Q Consensus 164 r~~I~g~~g~GKt~l~~~~i~~~~ 187 (515)
+++|+|.+++||||| ++.++...
T Consensus 26 ~I~vvG~~~~GKSTl-ln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSV-LENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHH-HHHHHTSC
T ss_pred eEEEEcCCCCCHHHH-HHHHHCCC
Confidence 799999999999999 78888754
No 500
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=71.82 E-value=1.7 Score=39.84 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=19.7
Q ss_pred CCcceeeecCCCCCccHHHHHHHHHh
Q psy2894 161 KGQRELIIGDRQTGKSSIAIDIIINQ 186 (515)
Q Consensus 161 rGqr~~I~g~~g~GKt~l~~~~i~~~ 186 (515)
+--++.|+|.+|+||||| +..++..
T Consensus 29 ~~~~i~i~G~~g~GKTTl-~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLL-IERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHH-HHHHHHH
T ss_pred CceEEEEEcCCCCCHHHH-HHHHHHH
Confidence 334789999999999999 4666654
Done!